Query 014373
Match_columns 426
No_of_seqs 236 out of 2085
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 04:30:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014373.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014373hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00150 Cellulase: Cellulase 100.0 2.3E-29 5.1E-34 241.9 25.5 266 37-366 3-280 (281)
2 PRK10150 beta-D-glucuronidase; 100.0 2.3E-27 5E-32 251.5 31.6 305 8-382 246-579 (604)
3 COG3934 Endo-beta-mannanase [C 100.0 7.3E-30 1.6E-34 247.6 9.2 272 62-383 25-307 (587)
4 TIGR03356 BGL beta-galactosida 99.9 1.5E-22 3.2E-27 205.2 23.6 300 62-393 53-424 (427)
5 PF02836 Glyco_hydro_2_C: Glyc 99.9 5.9E-22 1.3E-26 192.7 23.7 158 28-235 1-158 (298)
6 PRK10340 ebgA cryptic beta-D-g 99.9 4.7E-22 1E-26 220.1 25.7 250 8-368 287-550 (1021)
7 PRK09593 arb 6-phospho-beta-gl 99.9 6.4E-22 1.4E-26 202.5 23.9 308 61-400 71-470 (478)
8 PRK09589 celA 6-phospho-beta-g 99.9 1.5E-21 3.2E-26 199.8 25.3 308 61-400 65-469 (476)
9 PRK09525 lacZ beta-D-galactosi 99.9 1.6E-21 3.6E-26 215.4 25.2 259 8-368 303-576 (1027)
10 TIGR01233 lacG 6-phospho-beta- 99.9 2.7E-21 5.9E-26 197.6 24.6 307 61-400 51-461 (467)
11 PLN02998 beta-glucosidase 99.9 1.9E-21 4.2E-26 199.3 23.2 309 61-401 80-486 (497)
12 PRK13511 6-phospho-beta-galact 99.9 3.2E-21 7E-26 197.5 24.1 307 61-400 52-463 (469)
13 PLN02814 beta-glucosidase 99.9 3.2E-21 6.9E-26 198.0 23.1 310 61-402 75-482 (504)
14 PRK15014 6-phospho-beta-glucos 99.9 6.1E-21 1.3E-25 195.1 24.7 307 62-400 68-470 (477)
15 PRK09852 cryptic 6-phospho-bet 99.9 5.7E-21 1.2E-25 195.0 23.7 307 62-400 70-466 (474)
16 PLN02849 beta-glucosidase 99.9 7.5E-21 1.6E-25 195.2 22.8 308 61-400 77-480 (503)
17 COG2723 BglB Beta-glucosidase/ 99.9 1.1E-20 2.4E-25 187.5 22.0 303 62-397 58-447 (460)
18 PF00232 Glyco_hydro_1: Glycos 99.9 3.5E-22 7.5E-27 204.8 11.1 306 62-399 57-449 (455)
19 PF02449 Glyco_hydro_42: Beta- 99.9 2.4E-20 5.2E-25 187.0 20.1 286 61-398 8-373 (374)
20 COG3250 LacZ Beta-galactosidas 99.7 1.5E-16 3.2E-21 170.2 17.1 172 6-237 252-435 (808)
21 PF03198 Glyco_hydro_72: Gluca 99.7 3.5E-15 7.5E-20 141.2 18.8 276 22-381 5-292 (314)
22 KOG0626 Beta-glucosidase, lact 99.7 1.6E-14 3.5E-19 144.8 22.5 308 62-401 90-507 (524)
23 PF07745 Glyco_hydro_53: Glyco 99.6 1E-13 2.2E-18 134.7 18.5 239 65-361 26-294 (332)
24 PF01301 Glyco_hydro_35: Glyco 99.6 2E-13 4.3E-18 133.4 18.3 168 34-228 1-173 (319)
25 smart00633 Glyco_10 Glycosyl h 99.5 2.7E-12 5.9E-17 121.9 21.3 221 90-373 3-234 (254)
26 PF13204 DUF4038: Protein of u 99.5 1.6E-12 3.4E-17 125.6 17.9 167 32-235 2-186 (289)
27 PLN03059 beta-galactosidase; P 99.5 3.3E-12 7.2E-17 135.6 19.1 181 27-230 29-217 (840)
28 COG2730 BglC Endoglucanase [Ca 99.4 7.2E-12 1.6E-16 126.8 14.9 114 65-202 75-193 (407)
29 PF12876 Cellulase-like: Sugar 99.4 1E-12 2.3E-17 103.9 6.4 75 185-279 5-88 (88)
30 PF01229 Glyco_hydro_39: Glyco 99.3 1.8E-10 3.9E-15 119.4 17.1 279 62-381 38-346 (486)
31 COG3867 Arabinogalactan endo-1 99.2 1.7E-09 3.6E-14 100.7 20.7 271 43-363 39-342 (403)
32 COG1874 LacA Beta-galactosidas 99.2 2.8E-10 6.2E-15 119.3 14.2 174 31-227 4-191 (673)
33 KOG0496 Beta-galactosidase [Ca 99.0 5.4E-09 1.2E-13 107.3 12.7 151 28-201 20-176 (649)
34 PF00331 Glyco_hydro_10: Glyco 98.9 3.2E-08 7E-13 97.1 15.7 246 69-373 27-293 (320)
35 KOG2230 Predicted beta-mannosi 98.7 5.3E-07 1.1E-11 90.7 16.5 143 10-202 288-447 (867)
36 COG3693 XynA Beta-1,4-xylanase 98.5 1.8E-05 3.8E-10 75.4 18.7 220 90-372 69-309 (345)
37 PF14488 DUF4434: Domain of un 98.5 6.8E-06 1.5E-10 72.7 14.9 140 60-234 17-160 (166)
38 COG5309 Exo-beta-1,3-glucanase 98.4 1.9E-05 4.2E-10 73.0 17.8 203 61-345 61-269 (305)
39 COG3934 Endo-beta-mannanase [C 98.4 1.3E-09 2.9E-14 107.3 -11.7 354 24-402 34-471 (587)
40 PF11790 Glyco_hydro_cc: Glyco 98.3 1.2E-05 2.6E-10 75.6 13.6 141 193-362 68-211 (239)
41 PF14587 Glyco_hydr_30_2: O-Gl 97.9 0.0032 7E-08 62.3 21.8 148 73-237 57-228 (384)
42 PF02638 DUF187: Glycosyl hydr 97.6 0.0045 9.8E-08 60.6 17.2 208 61-281 17-263 (311)
43 COG5520 O-Glycosyl hydrolase [ 97.5 0.0034 7.4E-08 60.7 15.0 224 74-365 77-311 (433)
44 PF03662 Glyco_hydro_79n: Glyc 97.2 0.00077 1.7E-08 65.5 6.3 23 105-127 108-130 (319)
45 PF02055 Glyco_hydro_30: O-Gly 97.0 0.017 3.8E-07 59.9 15.3 244 65-364 103-380 (496)
46 PF13200 DUF4015: Putative gly 97.0 0.15 3.4E-06 49.7 20.4 279 61-364 11-313 (316)
47 PRK10785 maltodextrin glucosid 96.7 0.024 5.3E-07 60.5 13.5 163 61-234 177-371 (598)
48 PRK05402 glycogen branching en 96.3 0.13 2.8E-06 56.3 16.0 157 62-234 264-456 (726)
49 TIGR02402 trehalose_TreZ malto 96.2 0.13 2.7E-06 54.4 15.2 155 60-234 108-279 (542)
50 PLN02705 beta-amylase 96.1 0.058 1.3E-06 56.0 11.5 130 61-224 266-402 (681)
51 PLN02161 beta-amylase 96.1 0.08 1.7E-06 54.0 12.2 131 61-224 115-251 (531)
52 PLN02905 beta-amylase 96.1 0.066 1.4E-06 55.7 11.7 130 61-224 284-420 (702)
53 cd06565 GH20_GcnA-like Glycosy 96.1 0.18 4E-06 49.1 14.4 158 60-228 14-180 (301)
54 TIGR01515 branching_enzym alph 95.9 0.21 4.6E-06 53.6 15.3 167 61-231 154-345 (613)
55 PRK12313 glycogen branching en 95.9 0.33 7.1E-06 52.4 16.9 165 62-234 169-360 (633)
56 PLN02803 beta-amylase 95.9 0.079 1.7E-06 54.3 11.3 130 61-224 105-241 (548)
57 PLN02801 beta-amylase 95.9 0.096 2.1E-06 53.4 11.7 130 61-224 35-171 (517)
58 COG3664 XynB Beta-xylosidase [ 95.9 0.12 2.7E-06 51.2 12.1 247 70-380 12-277 (428)
59 PLN00197 beta-amylase; Provisi 95.8 0.1 2.2E-06 53.8 11.5 130 61-224 125-261 (573)
60 PF14871 GHL6: Hypothetical gl 95.7 0.053 1.2E-06 46.0 8.0 106 66-176 3-122 (132)
61 PRK14705 glycogen branching en 95.7 0.54 1.2E-05 53.8 18.0 165 63-231 766-954 (1224)
62 smart00642 Aamy Alpha-amylase 95.7 0.044 9.6E-07 48.5 7.6 69 60-128 16-92 (166)
63 PRK14706 glycogen branching en 95.6 0.4 8.8E-06 51.6 15.9 161 64-234 169-356 (639)
64 COG3534 AbfA Alpha-L-arabinofu 95.6 0.27 6E-06 49.4 13.4 180 64-281 50-246 (501)
65 COG1649 Uncharacterized protei 95.2 0.21 4.6E-06 50.3 11.4 163 60-235 61-272 (418)
66 PLN02960 alpha-amylase 95.1 0.93 2E-05 49.9 16.6 162 64-232 418-608 (897)
67 cd02742 GH20_hexosaminidase Be 95.1 0.66 1.4E-05 45.2 14.2 146 61-226 14-184 (303)
68 cd06564 GH20_DspB_LnbB-like Gl 94.9 1.1 2.4E-05 44.1 15.6 146 61-226 15-193 (326)
69 PRK12568 glycogen branching en 94.8 1.5 3.3E-05 47.7 17.1 162 63-231 270-458 (730)
70 TIGR02104 pulA_typeI pullulana 94.8 0.42 9.1E-06 51.3 13.0 145 66-231 167-345 (605)
71 PF00128 Alpha-amylase: Alpha 94.7 0.047 1E-06 52.6 5.1 66 62-127 3-73 (316)
72 PLN02447 1,4-alpha-glucan-bran 94.6 1.1 2.5E-05 48.7 15.7 163 63-231 251-442 (758)
73 PF01120 Alpha_L_fucos: Alpha- 94.4 1.2 2.5E-05 44.4 14.2 146 62-233 90-243 (346)
74 COG0296 GlgB 1,4-alpha-glucan 93.9 0.78 1.7E-05 48.8 12.4 177 46-229 144-351 (628)
75 PF01373 Glyco_hydro_14: Glyco 93.0 0.15 3.2E-06 51.0 5.0 121 62-200 15-156 (402)
76 PLN02361 alpha-amylase 92.8 0.67 1.5E-05 47.0 9.6 86 37-127 8-97 (401)
77 PF12891 Glyco_hydro_44: Glyco 92.2 0.34 7.4E-06 45.1 5.9 58 167-232 107-176 (239)
78 TIGR02456 treS_nterm trehalose 91.6 0.65 1.4E-05 49.1 8.2 68 60-127 25-97 (539)
79 cd06562 GH20_HexA_HexB-like Be 91.5 11 0.00023 37.6 16.2 109 61-176 16-147 (348)
80 cd06563 GH20_chitobiase-like T 91.4 9.9 0.00022 37.9 16.0 109 61-176 16-163 (357)
81 PRK10933 trehalose-6-phosphate 91.3 0.84 1.8E-05 48.4 8.6 63 60-127 30-102 (551)
82 TIGR02403 trehalose_treC alpha 91.3 0.81 1.8E-05 48.4 8.5 68 60-127 24-96 (543)
83 TIGR02102 pullulan_Gpos pullul 91.2 5.4 0.00012 45.6 15.2 151 62-234 479-670 (1111)
84 PRK09936 hypothetical protein; 91.0 9.3 0.0002 36.7 14.3 59 60-128 35-94 (296)
85 TIGR02100 glgX_debranch glycog 90.9 1.6 3.5E-05 47.5 10.4 59 68-127 189-266 (688)
86 PRK03705 glycogen debranching 90.7 0.61 1.3E-05 50.4 7.0 108 68-176 184-327 (658)
87 cd06568 GH20_SpHex_like A subg 90.1 8.5 0.00018 38.0 14.0 144 61-226 16-188 (329)
88 PRK09505 malS alpha-amylase; R 90.1 1.3 2.9E-05 48.0 8.8 67 61-127 228-313 (683)
89 PRK09441 cytoplasmic alpha-amy 89.8 1 2.2E-05 46.9 7.6 66 62-127 21-102 (479)
90 PF07488 Glyco_hydro_67M: Glyc 89.8 1.5 3.3E-05 42.1 7.9 128 61-225 55-187 (328)
91 TIGR02103 pullul_strch alpha-1 89.6 5.7 0.00012 44.4 13.4 111 105-238 403-527 (898)
92 PLN02877 alpha-amylase/limit d 89.4 11 0.00024 42.4 15.3 119 105-238 465-598 (970)
93 PF00728 Glyco_hydro_20: Glyco 89.3 2 4.3E-05 42.5 9.0 148 61-228 16-211 (351)
94 TIGR01531 glyc_debranch glycog 89.0 1.5 3.3E-05 50.5 8.5 97 27-127 98-206 (1464)
95 PRK14511 maltooligosyl trehalo 88.7 2.8 6E-05 46.5 10.0 68 61-128 18-91 (879)
96 smart00812 Alpha_L_fucos Alpha 88.6 11 0.00023 38.1 13.6 133 63-229 81-226 (384)
97 PF00332 Glyco_hydro_17: Glyco 88.4 11 0.00024 36.8 13.2 114 64-234 14-129 (310)
98 PLN02784 alpha-amylase 88.2 3.1 6.7E-05 45.8 9.9 115 9-127 463-589 (894)
99 cd06570 GH20_chitobiase-like_1 88.2 12 0.00027 36.6 13.4 63 61-126 16-88 (311)
100 PF05089 NAGLU: Alpha-N-acetyl 87.9 2.9 6.2E-05 41.0 8.6 151 60-231 16-214 (333)
101 cd06545 GH18_3CO4_chitinase Th 87.7 11 0.00024 35.5 12.5 94 106-235 46-139 (253)
102 TIGR02401 trehalose_TreY malto 87.6 2.4 5.2E-05 46.7 8.8 67 61-127 14-86 (825)
103 PRK14507 putative bifunctional 86.6 4 8.6E-05 48.5 10.3 69 61-129 756-830 (1693)
104 TIGR01370 cysRS possible cyste 86.3 22 0.00048 34.8 13.8 70 158-232 141-210 (315)
105 cd06547 GH85_ENGase Endo-beta- 86.1 2.4 5.2E-05 42.0 7.2 95 110-232 50-145 (339)
106 PF02065 Melibiase: Melibiase; 86.1 19 0.00041 36.5 13.7 171 42-233 40-232 (394)
107 PLN00196 alpha-amylase; Provis 85.9 2.9 6.2E-05 42.9 7.9 67 61-127 42-113 (428)
108 PF07555 NAGidase: beta-N-acet 85.6 7.1 0.00015 38.1 10.0 93 58-176 10-103 (306)
109 cd06602 GH31_MGAM_SI_GAA This 85.2 12 0.00027 37.0 11.8 158 61-233 22-199 (339)
110 COG0366 AmyA Glycosidases [Car 84.0 3.1 6.8E-05 43.1 7.4 68 60-127 26-98 (505)
111 cd02875 GH18_chitobiase Chitob 83.9 8.9 0.00019 38.3 10.2 90 110-234 68-157 (358)
112 PF03659 Glyco_hydro_71: Glyco 83.6 4.9 0.00011 40.6 8.2 54 61-127 15-68 (386)
113 PRK14510 putative bifunctional 82.2 3.1 6.7E-05 48.3 6.9 60 67-127 191-268 (1221)
114 COG3589 Uncharacterized conser 82.1 4.2 9.2E-05 39.6 6.7 56 62-127 15-70 (360)
115 KOG2233 Alpha-N-acetylglucosam 82.0 5.4 0.00012 40.7 7.6 157 60-233 75-280 (666)
116 PRK09856 fructoselysine 3-epim 82.0 3.4 7.3E-05 39.3 6.2 61 63-127 90-150 (275)
117 PF05913 DUF871: Bacterial pro 81.6 3.2 6.8E-05 41.4 5.9 57 61-127 12-68 (357)
118 PRK14582 pgaB outer membrane N 81.6 41 0.0009 36.5 14.6 166 62-234 333-537 (671)
119 PF01261 AP_endonuc_2: Xylose 81.3 22 0.00048 31.6 11.1 130 63-229 27-158 (213)
120 PRK13210 putative L-xylulose 5 80.0 5 0.00011 38.2 6.7 61 63-127 94-154 (284)
121 COG1523 PulA Type II secretory 80.0 4.2 9.1E-05 44.1 6.6 59 69-128 206-287 (697)
122 PRK13398 3-deoxy-7-phosphohept 79.3 23 0.00049 33.9 10.7 77 38-129 25-101 (266)
123 cd06600 GH31_MGAM-like This fa 79.2 45 0.00097 32.7 13.1 159 61-233 22-195 (317)
124 TIGR00542 hxl6Piso_put hexulos 79.1 6.2 0.00013 37.7 7.0 61 63-127 94-154 (279)
125 TIGR03234 OH-pyruv-isom hydrox 78.9 5.7 0.00012 37.3 6.5 63 63-129 84-146 (254)
126 cd06542 GH18_EndoS-like Endo-b 77.9 43 0.00092 31.4 12.2 100 105-234 50-151 (255)
127 cd06593 GH31_xylosidase_YicI Y 77.7 43 0.00093 32.5 12.5 158 60-234 21-205 (308)
128 KOG3698 Hyaluronoglucosaminida 77.2 23 0.0005 37.1 10.4 83 37-127 11-95 (891)
129 PRK13209 L-xylulose 5-phosphat 76.9 6.5 0.00014 37.5 6.4 61 63-127 99-159 (283)
130 cd06603 GH31_GANC_GANAB_alpha 76.9 22 0.00047 35.2 10.3 128 61-202 22-165 (339)
131 PRK08673 3-deoxy-7-phosphohept 76.8 20 0.00042 35.5 9.7 77 38-129 91-167 (335)
132 cd06595 GH31_xylosidase_XylS-l 75.9 20 0.00043 34.6 9.5 130 61-203 23-163 (292)
133 PRK12595 bifunctional 3-deoxy- 75.7 21 0.00045 35.7 9.7 78 37-129 115-192 (360)
134 COG3623 SgaU Putative L-xylulo 75.1 73 0.0016 29.8 12.1 71 101-202 91-161 (287)
135 PRK13397 3-deoxy-7-phosphohept 74.9 12 0.00027 35.2 7.4 76 39-129 14-89 (250)
136 PF01261 AP_endonuc_2: Xylose 74.0 6.3 0.00014 35.2 5.2 65 62-128 70-134 (213)
137 PF14883 GHL13: Hypothetical g 73.8 88 0.0019 30.2 13.4 238 63-326 17-266 (294)
138 cd06592 GH31_glucosidase_KIAA1 73.6 25 0.00054 34.2 9.6 126 60-201 27-167 (303)
139 PRK09997 hydroxypyruvate isome 73.4 10 0.00022 35.7 6.7 63 63-129 85-147 (258)
140 cd06569 GH20_Sm-chitobiase-lik 73.0 14 0.0003 38.2 7.9 63 61-126 20-117 (445)
141 PLN03244 alpha-amylase; Provis 71.8 50 0.0011 36.4 11.8 127 105-234 440-584 (872)
142 PLN02763 hydrolase, hydrolyzin 71.1 1.1E+02 0.0024 34.8 14.7 126 61-202 199-339 (978)
143 PF04914 DltD_C: DltD C-termin 69.2 24 0.00052 29.8 7.2 55 103-176 33-87 (130)
144 PRK14042 pyruvate carboxylase 69.0 34 0.00074 36.6 9.9 64 42-126 80-143 (596)
145 cd00019 AP2Ec AP endonuclease 67.9 11 0.00023 36.0 5.6 61 62-127 84-144 (279)
146 PRK14565 triosephosphate isome 67.5 30 0.00064 32.5 8.1 119 69-235 78-196 (237)
147 cd02874 GH18_CFLE_spore_hydrol 67.3 52 0.0011 31.9 10.3 95 109-233 48-142 (313)
148 cd06604 GH31_glucosidase_II_Ma 67.1 34 0.00073 33.8 9.0 126 61-202 22-162 (339)
149 KOG0470 1,4-alpha-glucan branc 66.8 31 0.00066 37.4 8.9 113 62-176 254-393 (757)
150 PRK09997 hydroxypyruvate isome 66.8 1.1E+02 0.0024 28.5 13.4 91 103-229 82-172 (258)
151 TIGR00542 hxl6Piso_put hexulos 66.6 1.2E+02 0.0026 28.7 12.7 126 62-229 51-176 (279)
152 KOG1066 Glucosidase II catalyt 65.1 21 0.00045 38.4 7.2 38 157-204 477-515 (915)
153 smart00636 Glyco_18 Glycosyl h 64.9 53 0.0011 32.1 10.0 99 107-235 53-155 (334)
154 TIGR02455 TreS_stutzeri trehal 63.5 23 0.00051 38.0 7.3 62 66-128 77-152 (688)
155 COG2342 Predicted extracellula 62.7 1.3E+02 0.0027 28.9 11.2 150 63-233 30-190 (300)
156 PRK13396 3-deoxy-7-phosphohept 62.3 92 0.002 31.0 10.9 89 26-129 83-175 (352)
157 TIGR01361 DAHP_synth_Bsub phos 60.9 42 0.00091 31.9 8.0 78 37-129 22-99 (260)
158 PF10566 Glyco_hydro_97: Glyco 60.4 55 0.0012 31.4 8.6 109 61-176 30-149 (273)
159 PRK09856 fructoselysine 3-epim 60.1 1.5E+02 0.0033 27.8 12.2 132 63-233 47-180 (275)
160 cd02872 GH18_chitolectin_chito 59.7 1.1E+02 0.0023 30.4 11.2 104 106-235 56-160 (362)
161 cd07937 DRE_TIM_PC_TC_5S Pyruv 59.6 34 0.00074 32.7 7.3 48 63-126 91-138 (275)
162 cd06589 GH31 The enzymes of gl 59.0 1.6E+02 0.0035 27.8 12.9 64 60-126 21-86 (265)
163 cd06591 GH31_xylosidase_XylS X 58.8 61 0.0013 31.7 9.0 125 61-202 22-162 (319)
164 COG5016 Pyruvate/oxaloacetate 58.3 51 0.0011 33.3 8.1 50 62-127 97-146 (472)
165 cd06598 GH31_transferase_CtsZ 56.4 59 0.0013 31.8 8.5 124 61-202 22-167 (317)
166 cd00598 GH18_chitinase-like Th 56.3 1.5E+02 0.0032 26.4 11.4 93 110-234 53-147 (210)
167 PRK13209 L-xylulose 5-phosphat 55.2 1.9E+02 0.0041 27.3 12.5 120 62-227 56-179 (283)
168 PRK12677 xylose isomerase; Pro 54.6 27 0.0006 35.2 5.9 65 63-127 114-180 (384)
169 PRK12581 oxaloacetate decarbox 54.6 55 0.0012 33.9 8.1 50 62-127 104-153 (468)
170 COG3142 CutC Uncharacterized p 54.1 78 0.0017 29.4 8.1 85 42-148 58-142 (241)
171 PRK09989 hypothetical protein; 54.1 32 0.0007 32.3 6.1 61 63-127 85-145 (258)
172 PF07071 DUF1341: Protein of u 53.2 35 0.00076 31.0 5.6 46 63-122 135-180 (218)
173 PTZ00333 triosephosphate isome 52.8 1.5E+02 0.0034 28.0 10.3 48 70-127 83-130 (255)
174 COG3661 AguA Alpha-glucuronida 52.2 1.3E+02 0.0028 30.7 9.9 61 62-127 182-242 (684)
175 cd02871 GH18_chitinase_D-like 52.0 2.3E+02 0.0049 27.6 11.8 49 106-176 60-108 (312)
176 cd07948 DRE_TIM_HCS Saccharomy 51.7 25 0.00054 33.5 4.8 61 66-128 74-134 (262)
177 PF01055 Glyco_hydro_31: Glyco 51.1 1.5E+02 0.0033 30.3 10.9 126 61-202 41-183 (441)
178 PRK12331 oxaloacetate decarbox 50.8 43 0.00094 34.5 6.7 49 62-126 95-143 (448)
179 cd06601 GH31_lyase_GLase GLase 50.1 73 0.0016 31.5 8.0 116 61-203 22-137 (332)
180 PRK05692 hydroxymethylglutaryl 50.0 26 0.00056 33.8 4.7 61 65-127 81-141 (287)
181 cd07939 DRE_TIM_NifV Streptomy 49.2 28 0.00061 32.9 4.8 60 66-127 72-131 (259)
182 PRK12330 oxaloacetate decarbox 49.1 67 0.0015 33.6 7.8 49 62-126 96-144 (499)
183 PRK14040 oxaloacetate decarbox 49.0 65 0.0014 34.6 7.9 47 62-124 96-142 (593)
184 PF09370 TIM-br_sig_trns: TIM- 48.6 58 0.0012 31.0 6.6 57 63-126 95-157 (268)
185 PF06415 iPGM_N: BPG-independe 48.4 94 0.002 28.8 7.9 59 62-128 45-103 (223)
186 PRK14567 triosephosphate isome 48.1 2.2E+02 0.0048 27.0 10.5 48 70-127 79-126 (253)
187 PF10566 Glyco_hydro_97: Glyco 48.0 51 0.0011 31.6 6.3 51 65-129 108-158 (273)
188 PF02057 Glyco_hydro_59: Glyco 47.6 80 0.0017 34.1 8.1 145 110-323 116-262 (669)
189 PF14701 hDGE_amylase: glucano 47.4 62 0.0014 33.0 7.1 66 62-127 21-98 (423)
190 cd01299 Met_dep_hydrolase_A Me 47.2 91 0.002 30.4 8.3 61 61-126 118-180 (342)
191 PRK12858 tagatose 1,6-diphosph 47.0 36 0.00079 33.7 5.3 56 65-126 108-163 (340)
192 KOG0471 Alpha-amylase [Carbohy 46.4 40 0.00088 35.7 5.9 66 62-127 39-109 (545)
193 PF03644 Glyco_hydro_85: Glyco 46.2 56 0.0012 31.9 6.5 94 110-232 46-140 (311)
194 PF13380 CoA_binding_2: CoA bi 45.9 48 0.001 27.2 5.1 43 61-123 64-106 (116)
195 cd06548 GH18_chitinase The GH1 45.8 1.8E+02 0.0038 28.4 10.0 100 106-234 70-181 (322)
196 COG3622 Hfi Hydroxypyruvate is 44.8 70 0.0015 30.0 6.3 64 62-129 84-147 (260)
197 COG2876 AroA 3-deoxy-D-arabino 44.6 1.1E+02 0.0024 29.1 7.7 76 38-128 43-118 (286)
198 cd07944 DRE_TIM_HOA_like 4-hyd 44.4 56 0.0012 31.1 6.0 47 66-128 85-131 (266)
199 TIGR03849 arch_ComA phosphosul 44.1 86 0.0019 29.4 6.9 51 62-126 70-120 (237)
200 TIGR03581 EF_0839 conserved hy 43.2 49 0.0011 30.4 5.0 45 63-121 135-179 (236)
201 smart00481 POLIIIAc DNA polyme 42.0 66 0.0014 23.1 4.9 47 63-126 15-61 (67)
202 PRK08195 4-hyroxy-2-oxovalerat 41.8 62 0.0013 32.0 6.1 46 66-127 91-136 (337)
203 PRK14842 undecaprenyl pyrophos 41.8 38 0.00083 31.8 4.3 63 62-124 38-100 (241)
204 TIGR02090 LEU1_arch isopropylm 41.2 42 0.00091 33.6 4.8 62 65-128 73-134 (363)
205 cd00311 TIM Triosephosphate is 41.2 3.1E+02 0.0067 25.7 11.3 49 69-127 77-125 (242)
206 TIGR02660 nifV_homocitr homoci 41.2 37 0.00081 34.0 4.5 60 66-127 75-134 (365)
207 PF02679 ComA: (2R)-phospho-3- 41.2 68 0.0015 30.2 5.8 69 38-127 66-134 (244)
208 TIGR03217 4OH_2_O_val_ald 4-hy 41.1 69 0.0015 31.6 6.3 46 66-127 90-135 (333)
209 cd07945 DRE_TIM_CMS Leptospira 41.0 38 0.00083 32.5 4.4 61 66-128 77-137 (280)
210 COG0276 HemH Protoheme ferro-l 40.7 3.3E+02 0.0071 26.8 10.6 107 109-225 105-219 (320)
211 PRK12399 tagatose 1,6-diphosph 40.6 49 0.0011 32.4 4.9 54 69-128 111-164 (324)
212 COG3525 Chb N-acetyl-beta-hexo 40.4 98 0.0021 33.3 7.3 63 61-126 276-366 (732)
213 PLN02746 hydroxymethylglutaryl 40.1 43 0.00093 33.3 4.6 60 65-126 123-182 (347)
214 KOG2499 Beta-N-acetylhexosamin 40.0 88 0.0019 32.4 6.7 66 62-127 197-271 (542)
215 PRK14841 undecaprenyl pyrophos 39.8 42 0.0009 31.4 4.2 64 62-125 33-96 (233)
216 TIGR03234 OH-pyruv-isom hydrox 39.3 3.1E+02 0.0068 25.3 13.4 56 160-228 115-170 (254)
217 COG3280 TreY Maltooligosyl tre 38.6 82 0.0018 34.4 6.5 69 61-129 17-91 (889)
218 cd02877 GH18_hevamine_XipI_cla 38.2 3.7E+02 0.008 25.8 12.2 21 106-126 59-79 (280)
219 PRK14831 undecaprenyl pyrophos 37.7 47 0.001 31.4 4.3 64 62-125 50-113 (249)
220 PF00682 HMGL-like: HMGL-like 37.5 63 0.0014 29.9 5.1 65 61-127 65-129 (237)
221 PLN02429 triosephosphate isome 37.3 1.6E+02 0.0035 28.8 7.9 19 109-127 166-188 (315)
222 KOG0259 Tyrosine aminotransfer 37.1 1E+02 0.0022 31.0 6.5 71 62-140 182-253 (447)
223 cd07943 DRE_TIM_HOA 4-hydroxy- 36.9 86 0.0019 29.7 6.0 46 66-127 88-133 (263)
224 PRK14839 undecaprenyl pyrophos 36.8 52 0.0011 30.8 4.3 64 62-125 39-102 (239)
225 TIGR01108 oadA oxaloacetate de 36.8 95 0.0021 33.3 6.8 49 62-126 90-138 (582)
226 cd07941 DRE_TIM_LeuA3 Desulfob 36.7 57 0.0012 31.2 4.8 58 67-126 82-139 (273)
227 PRK01060 endonuclease IV; Prov 36.7 2.5E+02 0.0054 26.5 9.3 51 64-122 13-63 (281)
228 cd06549 GH18_trifunctional GH1 36.1 2.1E+02 0.0045 27.6 8.7 63 156-234 82-144 (298)
229 PRK14840 undecaprenyl pyrophos 36.0 54 0.0012 31.0 4.3 64 62-125 52-115 (250)
230 TIGR00055 uppS undecaprenyl di 35.8 56 0.0012 30.4 4.4 64 62-125 29-92 (226)
231 PRK09282 pyruvate carboxylase 35.8 89 0.0019 33.5 6.5 49 62-126 95-143 (592)
232 PRK11858 aksA trans-homoaconit 35.8 61 0.0013 32.6 5.0 60 66-127 78-137 (378)
233 COG3345 GalA Alpha-galactosida 35.7 91 0.002 32.9 6.1 75 43-124 292-373 (687)
234 PRK04161 tagatose 1,6-diphosph 35.7 66 0.0014 31.6 4.9 57 67-129 111-167 (329)
235 COG1501 Alpha-glucosidases, fa 35.6 3.1E+02 0.0067 30.5 10.7 154 61-234 278-462 (772)
236 smart00518 AP2Ec AP endonuclea 35.5 2.9E+02 0.0062 25.9 9.5 53 64-124 11-63 (273)
237 PRK13210 putative L-xylulose 5 35.4 3.8E+02 0.0082 25.1 13.3 104 62-197 51-154 (284)
238 PRK14837 undecaprenyl pyrophos 35.4 57 0.0012 30.4 4.3 64 62-125 36-99 (230)
239 PRK09989 hypothetical protein; 35.2 3.7E+02 0.0081 25.0 14.3 90 104-229 83-172 (258)
240 PLN02561 triosephosphate isome 35.2 4E+02 0.0086 25.3 12.5 49 69-127 81-129 (253)
241 TIGR01232 lacD tagatose 1,6-di 34.8 71 0.0015 31.3 5.0 56 68-129 111-166 (325)
242 PRK10426 alpha-glucosidase; Pr 34.5 6.3E+02 0.014 27.4 13.9 154 62-234 220-409 (635)
243 cd06599 GH31_glycosidase_Aec37 34.3 4.5E+02 0.0097 25.6 10.8 123 62-201 28-170 (317)
244 PRK10240 undecaprenyl pyrophos 34.0 64 0.0014 30.1 4.4 64 62-125 23-86 (229)
245 TIGR02631 xylA_Arthro xylose i 33.3 1.1E+02 0.0024 30.8 6.4 65 63-127 115-181 (382)
246 COG3623 SgaU Putative L-xylulo 33.3 1.2E+02 0.0026 28.4 5.9 63 62-128 95-157 (287)
247 cd00475 CIS_IPPS Cis (Z)-Isopr 32.9 66 0.0014 29.8 4.3 64 62-125 30-93 (221)
248 cd07938 DRE_TIM_HMGL 3-hydroxy 32.8 73 0.0016 30.5 4.8 61 66-128 76-136 (274)
249 KOG2331 Predicted glycosylhydr 32.7 1.4E+02 0.0031 30.4 6.7 89 113-232 118-208 (526)
250 COG1099 Predicted metal-depend 32.7 60 0.0013 30.1 3.9 56 64-127 12-71 (254)
251 PRK05434 phosphoglyceromutase; 32.0 1.7E+02 0.0037 30.8 7.6 58 62-127 127-184 (507)
252 COG1453 Predicted oxidoreducta 32.0 5.4E+02 0.012 25.9 13.0 46 262-320 159-204 (391)
253 PF10035 DUF2179: Uncharacteri 31.9 50 0.0011 22.9 2.7 20 215-234 29-48 (55)
254 PRK14581 hmsF outer membrane N 31.8 5.8E+02 0.013 27.9 11.8 239 63-324 334-612 (672)
255 COG0269 SgbH 3-hexulose-6-phos 31.8 1.6E+02 0.0034 27.2 6.4 47 68-131 72-118 (217)
256 PRK12457 2-dehydro-3-deoxyphos 31.5 4.5E+02 0.0098 25.3 9.7 79 38-129 13-97 (281)
257 cd07947 DRE_TIM_Re_CS Clostrid 31.2 72 0.0016 30.7 4.5 60 66-127 77-136 (279)
258 cd02879 GH18_plant_chitinase_c 31.1 4.3E+02 0.0093 25.4 10.0 56 157-225 87-142 (299)
259 PRK14833 undecaprenyl pyrophos 30.9 71 0.0015 29.9 4.2 64 62-125 34-97 (233)
260 TIGR01235 pyruv_carbox pyruvat 30.9 1.7E+02 0.0037 34.1 8.1 65 42-127 609-673 (1143)
261 PRK14834 undecaprenyl pyrophos 30.2 85 0.0018 29.7 4.7 60 62-125 44-107 (249)
262 cd03174 DRE_TIM_metallolyase D 30.0 82 0.0018 29.4 4.7 61 66-128 77-137 (265)
263 cd02878 GH18_zymocin_alpha Zym 30.0 4.5E+02 0.0098 25.9 10.1 65 159-234 88-157 (345)
264 COG3684 LacD Tagatose-1,6-bisp 29.7 1.4E+02 0.003 28.4 5.7 54 69-129 117-170 (306)
265 PRK14041 oxaloacetate decarbox 29.4 1.3E+02 0.0029 31.2 6.3 50 62-127 94-143 (467)
266 PRK14836 undecaprenyl pyrophos 29.3 72 0.0016 30.2 4.0 63 63-125 45-107 (253)
267 PLN02229 alpha-galactosidase 29.1 2.1E+02 0.0045 29.3 7.5 80 42-128 62-150 (427)
268 PRK10658 putative alpha-glucos 29.0 1.7E+02 0.0036 32.0 7.2 108 62-175 282-406 (665)
269 PF00704 Glyco_hydro_18: Glyco 28.7 2.5E+02 0.0053 27.2 8.0 103 102-234 58-164 (343)
270 KOG2566 Beta-glucocerebrosidas 28.7 2.8E+02 0.006 28.0 7.9 36 161-205 226-263 (518)
271 COG0084 TatD Mg-dependent DNas 28.6 5.1E+02 0.011 24.5 11.8 23 295-318 109-131 (256)
272 cd07940 DRE_TIM_IPMS 2-isoprop 28.1 89 0.0019 29.7 4.5 59 66-126 72-134 (268)
273 PLN03033 2-dehydro-3-deoxyphos 28.0 2.5E+02 0.0053 27.1 7.3 78 39-129 15-97 (290)
274 TIGR00419 tim triosephosphate 27.9 1.6E+02 0.0035 26.9 5.9 44 69-126 74-117 (205)
275 PF00121 TIM: Triosephosphate 27.6 5.2E+02 0.011 24.2 9.8 50 69-128 77-126 (244)
276 COG0469 PykF Pyruvate kinase [ 27.3 1.7E+02 0.0037 30.4 6.6 49 65-125 19-67 (477)
277 TIGR01307 pgm_bpd_ind 2,3-bisp 27.1 2.3E+02 0.005 29.7 7.6 58 62-127 123-180 (501)
278 COG1306 Uncharacterized conser 27.1 1.1E+02 0.0025 29.6 4.8 64 61-126 75-144 (400)
279 PRK14832 undecaprenyl pyrophos 27.1 90 0.002 29.6 4.2 60 62-124 48-110 (253)
280 TIGR03128 RuMP_HxlA 3-hexulose 27.1 1.9E+02 0.0041 25.9 6.4 44 68-128 68-111 (206)
281 PRK14829 undecaprenyl pyrophos 26.6 99 0.0022 29.1 4.4 64 62-125 44-107 (243)
282 TIGR02171 Fb_sc_TIGR02171 Fibr 26.3 5.5E+02 0.012 29.0 10.4 26 102-127 804-829 (912)
283 cd06597 GH31_transferase_CtsY 26.1 5E+02 0.011 25.6 9.6 67 61-127 22-106 (340)
284 PRK13125 trpA tryptophan synth 26.1 1.7E+02 0.0036 27.4 6.0 50 64-128 89-138 (244)
285 PF03749 SfsA: Sugar fermentat 25.7 1.8E+02 0.0038 26.8 5.8 57 64-125 144-200 (215)
286 COG2108 Uncharacterized conser 25.7 1.5E+02 0.0032 29.2 5.4 48 66-126 124-171 (353)
287 COG1082 IolE Sugar phosphate i 25.4 3.6E+02 0.0077 25.0 8.2 65 62-128 83-148 (274)
288 COG1489 SfsA DNA-binding prote 24.4 3.9E+02 0.0085 25.0 7.7 58 63-125 154-211 (235)
289 COG0320 LipA Lipoate synthase 24.3 6.5E+02 0.014 24.3 9.3 156 60-281 97-252 (306)
290 PRK14830 undecaprenyl pyrophos 24.3 1.1E+02 0.0024 28.9 4.3 64 62-125 52-115 (251)
291 PRK14827 undecaprenyl pyrophos 23.9 1.1E+02 0.0025 29.6 4.4 64 62-125 97-160 (296)
292 PRK01060 endonuclease IV; Prov 23.5 2.6E+02 0.0057 26.3 6.9 57 62-126 88-146 (281)
293 PF13199 Glyco_hydro_66: Glyco 23.4 2.1E+02 0.0045 30.5 6.5 62 61-125 116-189 (559)
294 PF13547 GTA_TIM: GTA TIM-barr 22.9 2.9E+02 0.0064 26.6 6.7 81 190-281 19-109 (299)
295 PF14386 DUF4417: Domain of un 22.4 1.6E+02 0.0034 26.9 4.8 97 67-177 65-166 (200)
296 PRK00042 tpiA triosephosphate 22.4 1.1E+02 0.0023 29.0 3.8 49 69-127 79-127 (250)
297 cd00958 DhnA Class I fructose- 22.4 1.8E+02 0.0039 26.8 5.4 55 63-127 76-130 (235)
298 COG2875 CobM Precorrin-4 methy 22.3 3.3E+02 0.0072 25.5 6.7 87 24-125 14-109 (254)
299 PTZ00349 dehydrodolichyl dipho 22.3 1.2E+02 0.0026 29.7 4.2 60 62-125 49-115 (322)
300 PF01791 DeoC: DeoC/LacD famil 22.2 78 0.0017 29.3 2.9 53 66-125 79-131 (236)
301 PRK09058 coproporphyrinogen II 22.1 1.7E+02 0.0036 30.2 5.5 59 65-127 162-221 (449)
302 COG2852 Very-short-patch-repai 21.9 1.7E+02 0.0037 24.5 4.4 13 71-83 89-101 (129)
303 PRK12822 phospho-2-dehydro-3-d 21.8 5.8E+02 0.013 25.4 8.8 83 38-129 51-147 (356)
304 PF07611 DUF1574: Protein of u 21.8 1.1E+02 0.0024 30.3 3.9 28 98-125 244-271 (345)
305 cd00019 AP2Ec AP endonuclease 21.5 6.7E+02 0.015 23.4 10.4 86 102-226 81-166 (279)
306 PF07287 DUF1446: Protein of u 21.4 96 0.0021 31.0 3.4 63 63-125 10-77 (362)
307 PRK09261 phospho-2-dehydro-3-d 21.2 5.9E+02 0.013 25.4 8.7 83 38-129 51-147 (349)
308 KOG1065 Maltase glucoamylase a 20.9 6E+02 0.013 28.3 9.4 64 61-127 309-372 (805)
309 PLN02495 oxidoreductase, actin 20.9 2.8E+02 0.006 28.1 6.6 57 210-282 96-152 (385)
310 PF06415 iPGM_N: BPG-independe 20.9 4.5E+02 0.0097 24.4 7.4 53 63-127 14-68 (223)
311 COG1015 DeoB Phosphopentomutas 20.7 8.8E+02 0.019 24.4 10.1 111 64-204 225-342 (397)
312 PF02896 PEP-utilizers_C: PEP- 20.5 1.5E+02 0.0033 28.7 4.5 61 100-170 229-289 (293)
313 PRK09389 (R)-citramalate synth 20.5 1.5E+02 0.0032 31.1 4.7 63 65-129 75-137 (488)
No 1
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.97 E-value=2.3e-29 Score=241.91 Aligned_cols=266 Identities=27% Similarity=0.439 Sum_probs=184.7
Q ss_pred ECCeEEEEEEeeccchhhhccCCCChHHHHHHHHHHHHCCCCEEEeccccCCCccccc-CCCC-CCChHHHHHHHHHHHH
Q 014373 37 VNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQ-TSPS-VYDEEVFKALDFVISE 114 (426)
Q Consensus 37 ~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~-~~~g-~~~e~~l~~lD~~l~~ 114 (426)
.+|+++.++|+|.+|... ...+++|+.|+++|+|+|||++. |..++ +.|+ .+++..|+.||++|++
T Consensus 3 ~~G~~v~~~G~n~~w~~~--------~~~~~~~~~~~~~G~n~VRi~v~----~~~~~~~~~~~~~~~~~~~~ld~~v~~ 70 (281)
T PF00150_consen 3 QNGKPVNWRGFNTHWYNP--------SITEADFDQLKALGFNTVRIPVG----WEAYQEPNPGYNYDETYLARLDRIVDA 70 (281)
T ss_dssp TTSEBEEEEEEEETTSGG--------GSHHHHHHHHHHTTESEEEEEEE----STSTSTTSTTTSBTHHHHHHHHHHHHH
T ss_pred CCCCeEEeeeeecccCCC--------CCHHHHHHHHHHCCCCEEEeCCC----HHHhcCCCCCccccHHHHHHHHHHHHH
Confidence 479999999999986532 27789999999999999999875 44444 4555 5899999999999999
Q ss_pred HHHcCCEEEEecCCCcCCCCChhhHHHhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEE
Q 014373 115 AKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAW 194 (426)
Q Consensus 115 a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~w 194 (426)
|+++||+|||++|... .|.. ....+...+...+.++++++.|++| |+++|.|++|
T Consensus 71 a~~~gi~vild~h~~~----------~w~~-------~~~~~~~~~~~~~~~~~~~~~la~~--------y~~~~~v~~~ 125 (281)
T PF00150_consen 71 AQAYGIYVILDLHNAP----------GWAN-------GGDGYGNNDTAQAWFKSFWRALAKR--------YKDNPPVVGW 125 (281)
T ss_dssp HHHTT-EEEEEEEEST----------TCSS-------STSTTTTHHHHHHHHHHHHHHHHHH--------HTTTTTTEEE
T ss_pred HHhCCCeEEEEeccCc----------cccc-------cccccccchhhHHHHHhhhhhhccc--------cCCCCcEEEE
Confidence 9999999999999751 1210 0112234456788899999999999 9999999999
Q ss_pred EeccCCCCCCCC------ChhHHHHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCCccCCCCcccccccchhhhh-cC
Q 014373 195 ELMNEPRCTSDP------SGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRN-HQ 267 (426)
Q Consensus 195 eL~NEp~~~~~~------~~~~~~~w~~~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~np~~y~~~~g~d~~~~-~~ 267 (426)
||+|||...... ..+.+.+|++++.++||+.+|+++|+++..++... +. ...... ..
T Consensus 126 el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~~~~~~~---------~~-------~~~~~~P~~ 189 (281)
T PF00150_consen 126 ELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHLIIVGGGGWGAD---------PD-------GAAADNPND 189 (281)
T ss_dssp ESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEEHHHHTB---------HH-------HHHHHSTTT
T ss_pred EecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcceeecCCCccccc---------cc-------hhhhcCccc
Confidence 999999986432 12668899999999999999999999986333211 00 000000 01
Q ss_pred CCCcceEEEeccCCCccCCCC---hhHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCCCCChHHHHHHHHHHHHH
Q 014373 268 TLGVDFASVHIYADSWISQTI---SDAHLQFTKSWMEAHIEDAEKYLRMPVLFTEFGVSAKDTGYNTSFRDTLISSVYKT 344 (426)
Q Consensus 268 ~~~iD~~s~H~Y~~~w~~~~~---~~~~~~~~~~~l~~~~~~a~~~~~kPv~v~EfG~~~~~~~~~~~~r~~~~~~~~~~ 344 (426)
....+++++|.|...-..... ...........+......+.+ .++||+|+|||....... ...++...+++.
T Consensus 190 ~~~~~~~~~H~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~pv~~gE~G~~~~~~~----~~~~~~~~~~~~ 264 (281)
T PF00150_consen 190 ADNNDVYSFHFYDPYDFSDQWNPGNWGDASALESSFRAALNWAKK-NGKPVVVGEFGWSNNDGN----GSTDYADAWLDY 264 (281)
T ss_dssp TTTSEEEEEEEETTTCHHTTTSTCSHHHHHHHHHHHHHHHHHHHH-TTSEEEEEEEESSTTTSC----HHHHHHHHHHHH
T ss_pred ccCceeEEeeEeCCCCcCCccccccchhhhHHHHHHHHHHHHHHH-cCCeEEEeCcCCcCCCCC----cCHHHHHHHHHH
Confidence 246679999999852111100 011122334555666666666 799999999999854321 223333333443
Q ss_pred HHhhhhcCCCcccccccccCCC
Q 014373 345 LLNSTKKGGSGAGSLLWQLFPD 366 (426)
Q Consensus 345 ~~~~~~~~~~~~G~~~W~~~~~ 366 (426)
+.+ . .+|+++|+|..+
T Consensus 265 ~~~----~--~~g~~~W~~~~~ 280 (281)
T PF00150_consen 265 LEQ----N--GIGWIYWSWKPN 280 (281)
T ss_dssp HHH----T--TCEEEECEESSS
T ss_pred HHH----C--CCeEEEEecCCC
Confidence 332 2 689999999765
No 2
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.96 E-value=2.3e-27 Score=251.53 Aligned_cols=305 Identities=16% Similarity=0.205 Sum_probs=204.2
Q ss_pred cCccchhcccccccC----------CCCCc--EEEeCCeEEECCeEEEEEEeeccchhhhccCCCChHHHHHHHHHHHHC
Q 014373 8 FPSLQRIYDLQVRED----------DDWQM--VQKQGNQFVVNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSA 75 (426)
Q Consensus 8 ~~~~~~~~~~~~~~~----------~~~~f--v~~~g~~f~~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~ 75 (426)
+|+.|.||++.+... ...|| |+++++.|.+||+|++++|+|.|........+.+.+.+++||+.||++
T Consensus 246 ~p~~P~LY~l~v~l~~~g~~~d~~~~~~GfR~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~ 325 (604)
T PRK10150 246 QPGEGYLYTLCVELAKSGTECDTYPLRFGIRSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWI 325 (604)
T ss_pred CCCCCceEEEEEEEeeCCeeEEEEEeeeEEEEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHC
Confidence 589999999876532 14677 777899999999999999999876543333345678899999999999
Q ss_pred CCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhHHHhhhh--cCCCCCC-
Q 014373 76 GLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKA--AGLNLTS- 152 (426)
Q Consensus 76 G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~--~g~~~~~- 152 (426)
|+|+||+.+. | . + .+++++|.++||.|+..+.. |.. . .|... .+.+...
T Consensus 326 G~N~vR~sh~-----p---~-----~-------~~~~~~cD~~GllV~~E~p~-~~~----~---~~~~~~~~~~~~~~~ 377 (604)
T PRK10150 326 GANSFRTSHY-----P---Y-----S-------EEMLDLADRHGIVVIDETPA-VGL----N---LSFGAGLEAGNKPKE 377 (604)
T ss_pred CCCEEEeccC-----C---C-----C-------HHHHHHHHhcCcEEEEeccc-ccc----c---ccccccccccccccc
Confidence 9999999532 1 0 1 26889999999999988642 210 0 00000 0000000
Q ss_pred -CCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCEE
Q 014373 153 -DDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLV 231 (426)
Q Consensus 153 -~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV 231 (426)
-.....+|+..+.+++.++.+|+| ++|||+|++|.++||+.... +....++++|.+.+|++||+|+|
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~mv~r--------~~NHPSIi~Ws~gNE~~~~~----~~~~~~~~~l~~~~k~~DptR~v 445 (604)
T PRK10150 378 TYSEEAVNGETQQAHLQAIRELIAR--------DKNHPSVVMWSIANEPASRE----QGAREYFAPLAELTRKLDPTRPV 445 (604)
T ss_pred cccccccchhHHHHHHHHHHHHHHh--------ccCCceEEEEeeccCCCccc----hhHHHHHHHHHHHHHhhCCCCce
Confidence 001123578889999999999999 99999999999999986532 34678999999999999999999
Q ss_pred EeccccccCCCCCCCccCCCCcccccccchhhhhcCCCCcceEEEeccCCCccCC-CChhHHHHHHHHHHHHHHHHHHHh
Q 014373 232 EIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDFASVHIYADSWISQ-TISDAHLQFTKSWMEAHIEDAEKY 310 (426)
Q Consensus 232 ~~g~~g~~~~~~~~~~~~np~~y~~~~g~d~~~~~~~~~iD~~s~H~Y~~~w~~~-~~~~~~~~~~~~~l~~~~~~a~~~ 310 (426)
+.+...+.. +. .....+.+|++++|.|+. |... .... ....++...+....+.
T Consensus 446 t~~~~~~~~----------~~-----------~~~~~~~~Dv~~~N~Y~~-wy~~~~~~~----~~~~~~~~~~~~~~~~ 499 (604)
T PRK10150 446 TCVNVMFAT----------PD-----------TDTVSDLVDVLCLNRYYG-WYVDSGDLE----TAEKVLEKELLAWQEK 499 (604)
T ss_pred EEEecccCC----------cc-----------cccccCcccEEEEcccce-ecCCCCCHH----HHHHHHHHHHHHHHHh
Confidence 987522100 10 001235689999999987 4321 1111 1122233222222221
Q ss_pred CCCcEEEEecCCCCCC-------CCCChHHHHHHHHHHHHHHHhhhhcCCCcccccccccCCC----CCC-CCCCCceEE
Q 014373 311 LRMPVLFTEFGVSAKD-------TGYNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPD----GTD-YMNDGYAIV 378 (426)
Q Consensus 311 ~~kPv~v~EfG~~~~~-------~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~----g~~-~~~dg~~i~ 378 (426)
.+||++++|||+.+.. ..++++.|..+++..+..+.+ ...++|.++|++.|. |.. .-++..|++
T Consensus 500 ~~kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~~----~p~~~G~~iW~~~D~~~~~g~~~~~g~~~Gl~ 575 (604)
T PRK10150 500 LHKPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFDR----VPAVVGEQVWNFADFATSQGILRVGGNKKGIF 575 (604)
T ss_pred cCCCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHhc----CCceEEEEEEeeeccCCCCCCcccCCCcceeE
Confidence 4899999999965431 124678888888876665443 356899999999983 321 123467777
Q ss_pred eCCC
Q 014373 379 LSKS 382 (426)
Q Consensus 379 ~~~~ 382 (426)
..+.
T Consensus 576 ~~dr 579 (604)
T PRK10150 576 TRDR 579 (604)
T ss_pred cCCC
Confidence 6553
No 3
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=99.96 E-value=7.3e-30 Score=247.63 Aligned_cols=272 Identities=23% Similarity=0.381 Sum_probs=203.9
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHH-HHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhHH
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEV-FKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYV 140 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~-l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~ 140 (426)
.+.++++|..++.+|++++|+|.+ |++ ......|..+... +.+++.+++.|...+|+|+++|.+.|.++||++++.
T Consensus 25 ~~ei~~dle~a~~vg~k~lR~fiL-DgE--dc~d~~G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~I 101 (587)
T COG3934 25 NREIKADLEPAGFVGVKDLRLFIL-DGE--DCRDKEGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRI 101 (587)
T ss_pred hhhhhcccccccCccceeEEEEEe-cCc--chhhhhceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEe
Confidence 468899999999999999999954 332 1223345555444 999999999999999999999999999999999999
Q ss_pred HhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCCCCCChhHHHHHHHHHHH
Q 014373 141 KWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAV 220 (426)
Q Consensus 141 ~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~ 220 (426)
.|++. +++++++-|++.+.-+++|++.+|+- ||.+|+|++|.|.|||.+....++..+..|..+|.+
T Consensus 102 pwag~-----~~pdn~iyD~k~~~~~kkyvedlVk~--------yk~~ptI~gw~l~Ne~lv~~p~s~N~f~~w~~emy~ 168 (587)
T COG3934 102 PWAGE-----QSPDNVIYDPKFRGPGKKYVEDLVKP--------YKLDPTIAGWALRNEPLVEAPISVNNFWDWSGEMYA 168 (587)
T ss_pred ecCCC-----CCccccccchhhcccHHHHHHHHhhh--------hccChHHHHHHhcCCccccccCChhHHHHHHHHHHH
Confidence 99632 35678889999999999999999998 999999999999999988776678899999999999
Q ss_pred HHHhcCCCCEEEeccccccCCCCCCCccCCCCcccccccchhhhhcCCCCcceEEEeccCCCccCCCChhHHHHHHHHHH
Q 014373 221 YVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDFASVHIYADSWISQTISDAHLQFTKSWM 300 (426)
Q Consensus 221 ~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~np~~y~~~~g~d~~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~l 300 (426)
+||.+||+|+|++|..++.- + .+-| | .....+|+.++|.|| .|.... ...+...|.
T Consensus 169 yiK~ldd~hlvsvGD~~sp~---~---~~~p--y-----------N~r~~vDya~~hLY~-hyd~sl----~~r~s~~yg 224 (587)
T COG3934 169 YIKWLDDGHLVSVGDPASPW---P---QYAP--Y-----------NARFYVDYAANHLYR-HYDTSL----VSRVSTVYG 224 (587)
T ss_pred HhhccCCCCeeecCCcCCcc---c---ccCC--c-----------ccceeeccccchhhh-hccCCh----hheeeeeec
Confidence 99999999999999866520 0 0112 1 122368999999998 454321 122334566
Q ss_pred HHHHHHHHHhCC-CcEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHhhhhcCCCcccccccccCCCCC---------CC
Q 014373 301 EAHIEDAEKYLR-MPVLFTEFGVSAKDTGYNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGT---------DY 370 (426)
Q Consensus 301 ~~~~~~a~~~~~-kPv~v~EfG~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~---------~~ 370 (426)
..+++.... .| +|++++|||.+...+......+-.|. ..++.. + +.|+++|++.+.+. .+
T Consensus 225 ~~~l~i~~~-~g~~pV~leefGfsta~g~e~s~ayfiw~----~lal~~----g-gdGaLiwclsdf~~gsdd~ey~w~p 294 (587)
T COG3934 225 KPYLDIPTI-MGWQPVNLEEFGFSTAFGQENSPAYFIWI----RLALDT----G-GDGALIWCLSDFHLGSDDSEYTWGP 294 (587)
T ss_pred chhhccchh-cccceeeccccCCcccccccccchhhhhh----hhHHhh----c-CCceEEEEecCCccCCCCCCCcccc
Confidence 667777776 57 99999999999875321111111222 222221 2 67999999987641 23
Q ss_pred CCCCceEEeCCCc
Q 014373 371 MNDGYAIVLSKSP 383 (426)
Q Consensus 371 ~~dg~~i~~~~~~ 383 (426)
..++|+|+..|.+
T Consensus 295 ~el~fgiIradgp 307 (587)
T COG3934 295 MELEFGIIRADGP 307 (587)
T ss_pred ccceeeeecCCCc
Confidence 4468999988765
No 4
>TIGR03356 BGL beta-galactosidase.
Probab=99.91 E-value=1.5e-22 Score=205.22 Aligned_cols=300 Identities=15% Similarity=0.211 Sum_probs=200.9
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCC-CCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhHH
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTS-PSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYV 140 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~-~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~ 140 (426)
..++++||+.|+++|+|++|+.+ .|++++|. +|.+|++.++.+|.+|++|+++||.+|++|+. |+ +|
T Consensus 53 y~~y~eDi~l~~~~G~~~~R~si----~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~H-fd----~P--- 120 (427)
T TIGR03356 53 YHRYEEDVALMKELGVDAYRFSI----AWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYH-WD----LP--- 120 (427)
T ss_pred HHhHHHHHHHHHHcCCCeEEccc----chhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeecc-CC----cc---
Confidence 57899999999999999999954 38899988 68899999999999999999999999999975 32 23
Q ss_pred HhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCCCC--------CC----h
Q 014373 141 KWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSD--------PS----G 208 (426)
Q Consensus 141 ~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~--------~~----~ 208 (426)
.|....|+ |.+++..+.|.+|++.+++| |++ .|-.|++.|||+.... .. .
T Consensus 121 ~~l~~~gG--------w~~~~~~~~f~~ya~~~~~~--------~~d--~v~~w~t~NEp~~~~~~~y~~G~~~P~~~~~ 182 (427)
T TIGR03356 121 QALEDRGG--------WLNRDTAEWFAEYAAVVAER--------LGD--RVKHWITLNEPWCSAFLGYGLGVHAPGLRDL 182 (427)
T ss_pred HHHHhcCC--------CCChHHHHHHHHHHHHHHHH--------hCC--cCCEEEEecCcceecccchhhccCCCCCccH
Confidence 35333343 78899999999999999999 998 4667999999985421 11 0
Q ss_pred h-HHH------HHHHHHHHHHHhcCCCCEEEecc--ccccCCCC-CCCc-----------c--CCCC---cccc----cc
Q 014373 209 D-TLQ------SWIQEMAVYVKSIDAKHLVEIGL--EGFYGPSA-PDRA-----------K--FNPN---SYAT----QV 258 (426)
Q Consensus 209 ~-~~~------~w~~~~~~~Ir~~dp~~lV~~g~--~g~~~~~~-~~~~-----------~--~np~---~y~~----~~ 258 (426)
. .++ .-..++.+++|+..|+..|.+-. ..+++.+. +... . .+|. .|.. ..
T Consensus 183 ~~~~~~~hnll~Aha~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l 262 (427)
T TIGR03356 183 RAALQAAHHLLLAHGLAVQALRANGPGAQVGIVLNLTPVYPASDSPEDVAAARRADGLLNRWFLDPLLKGRYPEDLLEYL 262 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeeeeCCCCHHHHHHHHHHHHHHhhhhhHHHhCCCCCHHHHHHh
Confidence 1 111 11234567788888887765532 22233211 1100 0 0110 0100 00
Q ss_pred cc--hhh---hhcCCCCcceEEEeccCCCccCCC------------C-hhH--HHHHHHHHHHHHHHHHHHhCCC-cEEE
Q 014373 259 GT--DFI---RNHQTLGVDFASVHIYADSWISQT------------I-SDA--HLQFTKSWMEAHIEDAEKYLRM-PVLF 317 (426)
Q Consensus 259 g~--d~~---~~~~~~~iD~~s~H~Y~~~w~~~~------------~-~~~--~~~~~~~~l~~~~~~a~~~~~k-Pv~v 317 (426)
+. .+. .......+||+++++|........ . ..+ ..+..+.-|+..+....+++++ ||+|
T Consensus 263 ~~~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~L~~~~~rY~~ppi~I 342 (427)
T TIGR03356 263 GDAPFVQDGDLETIAQPLDFLGINYYTRSVVAADPGTGAGFVEVPEGVPKTAMGWEVYPEGLYDLLLRLKEDYPGPPIYI 342 (427)
T ss_pred ccCCCCCHHHHHHhcCCCCEEEEeccccceeccCCCCCCCccccCCCCCcCCCCCeechHHHHHHHHHHHHhcCCCCEEE
Confidence 00 000 000124679999999965432110 0 000 0122344566666555555787 7999
Q ss_pred EecCCCCCC---CC-CChHHHHHHHHHHHHHHHhhhhcCCCcccccccccCCCCCCCCCC----CceEEeCCCccHHHHH
Q 014373 318 TEFGVSAKD---TG-YNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGTDYMND----GYAIVLSKSPSTSNII 389 (426)
Q Consensus 318 ~EfG~~~~~---~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~~~~~d----g~~i~~~~~~~~~~~~ 389 (426)
+|.|+...+ .+ ..++.|..|++.++.++.+++++|.++.|++.|++.|+ .+|.+ .||+++.|-.+..|++
T Consensus 343 TENG~~~~d~~~~g~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~Wsl~Dn--~ew~~gy~~rfGl~~VD~~~~~R~~ 420 (427)
T TIGR03356 343 TENGAAFDDEVTDGEVHDPERIAYLRDHLAALARAIEEGVDVRGYFVWSLLDN--FEWAEGYSKRFGLVHVDYETQKRTP 420 (427)
T ss_pred eCCCCCcCCCCcCCCcCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEecccccc--cchhcccccccceEEECCCCCcccc
Confidence 999997532 11 34678999999999999999999999999999999999 56643 6778887766666666
Q ss_pred HHHH
Q 014373 390 SLHS 393 (426)
Q Consensus 390 ~~~~ 393 (426)
|+++
T Consensus 421 K~S~ 424 (427)
T TIGR03356 421 KDSA 424 (427)
T ss_pred ccee
Confidence 6543
No 5
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.90 E-value=5.9e-22 Score=192.72 Aligned_cols=158 Identities=16% Similarity=0.275 Sum_probs=113.8
Q ss_pred EEEeCCeEEECCeEEEEEEeeccchhhhccCCCChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHH
Q 014373 28 VQKQGNQFVVNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKA 107 (426)
Q Consensus 28 v~~~g~~f~~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~ 107 (426)
|+|++++|.|||||++++|+|.+..........+.+.+++||..||++|+|+||+.+... +
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~-------------~------ 61 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPP-------------S------ 61 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS---------------S------
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccC-------------c------
Confidence 789999999999999999999764322222234688999999999999999999954311 1
Q ss_pred HHHHHHHHHHcCCEEEEecCCCcCCCCChhhHHHhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccC
Q 014373 108 LDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKN 187 (426)
Q Consensus 108 lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~ 187 (426)
.+++++|.++||.|+..+... ..+. |.. .+ .......+++..+.+++.++.+|+| ++|
T Consensus 62 -~~~~~~cD~~GilV~~e~~~~--~~~~------~~~-~~----~~~~~~~~~~~~~~~~~~~~~~v~~--------~~N 119 (298)
T PF02836_consen 62 -PRFYDLCDELGILVWQEIPLE--GHGS------WQD-FG----NCNYDADDPEFRENAEQELREMVRR--------DRN 119 (298)
T ss_dssp -HHHHHHHHHHT-EEEEE-S-B--SCTS------SSS-TS----CTSCTTTSGGHHHHHHHHHHHHHHH--------HTT
T ss_pred -HHHHHHHhhcCCEEEEecccc--ccCc------ccc-CC----ccccCCCCHHHHHHHHHHHHHHHHc--------CcC
Confidence 268899999999999887431 0010 100 00 0012345788999999999999999 999
Q ss_pred CCcEEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCEEEecc
Q 014373 188 DPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIGL 235 (426)
Q Consensus 188 ~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~g~ 235 (426)
||+|++|.++||+ ....+++++.+.+|++||+++|+.++
T Consensus 120 HPSIi~W~~gNE~---------~~~~~~~~l~~~~k~~DptRpv~~~~ 158 (298)
T PF02836_consen 120 HPSIIMWSLGNES---------DYREFLKELYDLVKKLDPTRPVTYAS 158 (298)
T ss_dssp -TTEEEEEEEESS---------HHHHHHHHHHHHHHHH-TTSEEEEET
T ss_pred cCchheeecCccC---------ccccchhHHHHHHHhcCCCCceeecc
Confidence 9999999999999 35677899999999999999998764
No 6
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=99.90 E-value=4.7e-22 Score=220.11 Aligned_cols=250 Identities=16% Similarity=0.203 Sum_probs=171.8
Q ss_pred cCccchhcccccccC-----------CCCCc--EEEeCCeEEECCeEEEEEEeeccchhhhccCCCChHHHHHHHHHHHH
Q 014373 8 FPSLQRIYDLQVRED-----------DDWQM--VQKQGNQFVVNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASS 74 (426)
Q Consensus 8 ~~~~~~~~~~~~~~~-----------~~~~f--v~~~g~~f~~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~ 74 (426)
+|+.|.||++.+... ...|| |++++++|.+||+|++++|+|.|..........+.+.+++||+.||+
T Consensus 287 s~e~P~LY~l~v~l~~~~g~~~d~~~~~~GfR~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~ 366 (1021)
T PRK10340 287 SAESPYLYHLVMTLKDANGNVLEVVPQRVGFRDIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQ 366 (1021)
T ss_pred CCCCCeeEEEEEEEEcCCCCEEEEEEeeeEEEEEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHH
Confidence 589999999877532 14577 77789999999999999999987432222223467899999999999
Q ss_pred CCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhHHHhhhhcCCCCCCCC
Q 014373 75 AGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDD 154 (426)
Q Consensus 75 ~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~g~~~~~~~ 154 (426)
+|+|+||+++.. +. .+++++|.++||+|+-... .+ . .|+.. .+ ...
T Consensus 367 ~g~NavR~sHyP--------~~------------~~fydlcDe~GllV~dE~~-~e-~-~g~~~-------~~----~~~ 412 (1021)
T PRK10340 367 HNINSVRTAHYP--------ND------------PRFYELCDIYGLFVMAETD-VE-S-HGFAN-------VG----DIS 412 (1021)
T ss_pred CCCCEEEecCCC--------CC------------HHHHHHHHHCCCEEEECCc-cc-c-cCccc-------cc----ccc
Confidence 999999996431 11 1678999999999988752 11 0 11100 00 001
Q ss_pred CcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCEEEec
Q 014373 155 EFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIG 234 (426)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~g 234 (426)
.+..+|...+.+.+.++.+|+| ++|||+|++|.++||.... .. +.+|.+.+|++||.++|+..
T Consensus 413 ~~~~~p~~~~~~~~~~~~mV~R--------drNHPSIi~WslGNE~~~g-----~~----~~~~~~~~k~~DptR~v~~~ 475 (1021)
T PRK10340 413 RITDDPQWEKVYVDRIVRHIHA--------QKNHPSIIIWSLGNESGYG-----CN----IRAMYHAAKALDDTRLVHYE 475 (1021)
T ss_pred cccCCHHHHHHHHHHHHHHHHh--------CCCCCEEEEEECccCcccc-----HH----HHHHHHHHHHhCCCceEEeC
Confidence 2345788889999999999999 9999999999999998542 22 37899999999999999754
Q ss_pred cccccCCCCCCCccCCCCcccccccchhhhhcCCCCcceEEEeccCCCccCCCChhHHHHHHHHHHHHHHHHHHHhCCCc
Q 014373 235 LEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDFASVHIYADSWISQTISDAHLQFTKSWMEAHIEDAEKYLRMP 314 (426)
Q Consensus 235 ~~g~~~~~~~~~~~~np~~y~~~~g~d~~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~l~~~~~~a~~~~~kP 314 (426)
... ....+|+++. +|+.. . .+..+ .....+||
T Consensus 476 ~~~-----------------------------~~~~~Dv~~~-~Y~~~-----------~----~~~~~---~~~~~~kP 507 (1021)
T PRK10340 476 EDR-----------------------------DAEVVDVIST-MYTRV-----------E----LMNEF---GEYPHPKP 507 (1021)
T ss_pred CCc-----------------------------Cccccceecc-ccCCH-----------H----HHHHH---HhCCCCCc
Confidence 210 1235688885 45531 1 12221 12214799
Q ss_pred EEEEecCCCCCC-CCCChHHHHHHHHHHHHHHHhhhhcCCCcccccccccCCCCC
Q 014373 315 VLFTEFGVSAKD-TGYNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGT 368 (426)
Q Consensus 315 v~v~EfG~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~ 368 (426)
+++.|++.+... +|. -.+| .+.+.+ ....+|.++|.|.|+|.
T Consensus 508 ~i~~Ey~hamgn~~g~----~~~y----w~~~~~----~p~l~GgfiW~~~D~~~ 550 (1021)
T PRK10340 508 RILCEYAHAMGNGPGG----LTEY----QNVFYK----HDCIQGHYVWEWCDHGI 550 (1021)
T ss_pred EEEEchHhccCCCCCC----HHHH----HHHHHh----CCceeEEeeeecCcccc
Confidence 999999876542 221 1232 233332 35689999999999754
No 7
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=99.90 E-value=6.4e-22 Score=202.54 Aligned_cols=308 Identities=16% Similarity=0.236 Sum_probs=208.4
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCC--CCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhh
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTS--PSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQ 138 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~--~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~ 138 (426)
..+++++|+++|+++|+|+.|+-+ .|++++|. +|.+|+++++.++++|+.+.++||.++|||+. |+. |+
T Consensus 71 ~Yhry~eDi~Lm~~lG~~aYRfSI----sWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H-~dl----P~ 141 (478)
T PRK09593 71 MYHHYKEDIALFAEMGFKTYRMSI----AWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITH-FDC----PM 141 (478)
T ss_pred hHHhhHHHHHHHHHcCCCEEEEec----chhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecc-cCC----CH
Confidence 357999999999999999999844 49999886 45689999999999999999999999999964 532 43
Q ss_pred HHHhhhhc-CCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCCCC----------CC
Q 014373 139 YVKWGKAA-GLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSD----------PS 207 (426)
Q Consensus 139 y~~W~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~----------~~ 207 (426)
|.... |+ |.++++.+.|.+|.+.+++| |++ .|-.|..+|||++... +.
T Consensus 142 ---~L~~~~GG--------W~n~~~v~~F~~YA~~~~~~--------fgd--rVk~WiT~NEP~~~~~~~~~~~g~~~~~ 200 (478)
T PRK09593 142 ---HLIEEYGG--------WRNRKMVGFYERLCRTLFTR--------YKG--LVKYWLTFNEINMILHAPFMGAGLYFEE 200 (478)
T ss_pred ---HHHhhcCC--------CCChHHHHHHHHHHHHHHHH--------hcC--cCCEEEeecchhhhhcccccccCcccCC
Confidence 54332 44 88999999999999999999 998 6778999999985321 11
Q ss_pred h----h-HHHHH------HHHHHHHHHhcCCCCEEEecccc--ccCCCC-CCCc------------cCCCC---cccc--
Q 014373 208 G----D-TLQSW------IQEMAVYVKSIDAKHLVEIGLEG--FYGPSA-PDRA------------KFNPN---SYAT-- 256 (426)
Q Consensus 208 ~----~-~~~~w------~~~~~~~Ir~~dp~~lV~~g~~g--~~~~~~-~~~~------------~~np~---~y~~-- 256 (426)
+ . .++.- ...+.+++|+..|+..|.+-... +++.+. ++.. -.+|. .|..
T Consensus 201 g~~~~~~~~~a~h~~llAHa~A~~~~~~~~~~g~VGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~fld~~~~G~YP~~~ 280 (478)
T PRK09593 201 GENKEQVKYQAAHHELVASAIATKIAHEVDPENKVGCMLAAGQYYPNTCHPEDVWAAMKEDRENYFFIDVQARGEYPNYA 280 (478)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeeEeCCCCHHHHHHHHHHHHHhhhhhhhhhCCCccHHH
Confidence 1 0 11111 12345678888887666553222 232211 1000 00110 0100
Q ss_pred -----cccc--hhhh----hcCCCCcceEEEeccCCCccCCC---------C-------h--h-H--HHHHHHHHHHHHH
Q 014373 257 -----QVGT--DFIR----NHQTLGVDFASVHIYADSWISQT---------I-------S--D-A--HLQFTKSWMEAHI 304 (426)
Q Consensus 257 -----~~g~--d~~~----~~~~~~iD~~s~H~Y~~~w~~~~---------~-------~--~-~--~~~~~~~~l~~~~ 304 (426)
..+. .|.. ......+||+++++|........ . + + . ..+..+..|+..+
T Consensus 281 ~~~~~~~~~~~~~~~~d~~~ik~g~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~gw~i~P~Gl~~~l 360 (478)
T PRK09593 281 KKRFEREGITIEMTEEDLELLKENTVDFISFSYYSSRVASGDPKVNEKTAGNIFASLKNPYLKASEWGWQIDPLGLRITL 360 (478)
T ss_pred HHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEecccCcccccCCCCCCCCCCCccccccCCCcccCCCCCEECHHHHHHHH
Confidence 0000 0100 01124679999999965432110 0 0 0 0 0123345566666
Q ss_pred HHHHHhCCCcEEEEecCCCCCCC----C-CChHHHHHHHHHHHHHHHhhhh-cCCCcccccccccCCCCCCCCCCC----
Q 014373 305 EDAEKYLRMPVLFTEFGVSAKDT----G-YNTSFRDTLISSVYKTLLNSTK-KGGSGAGSLLWQLFPDGTDYMNDG---- 374 (426)
Q Consensus 305 ~~a~~~~~kPv~v~EfG~~~~~~----~-~~~~~r~~~~~~~~~~~~~~~~-~~~~~~G~~~W~~~~~g~~~~~dg---- 374 (426)
....+++++||+|+|.|+...+. + ..+..|..|++.++.++.++++ .|.++.|++.|++.|+ .+|..|
T Consensus 361 ~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn--~EW~~G~y~~ 438 (478)
T PRK09593 361 NTIWDRYQKPMFIVENGLGAVDKPDENGYVEDDYRIDYLAAHIKAMRDAINEDGVELLGYTTWGCIDL--VSAGTGEMKK 438 (478)
T ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHh--hcccCCCccC
Confidence 55555588999999999985431 1 3477899999999999999995 8999999999999999 777666
Q ss_pred -ceEEeCCCc-----cHHHHHHHHHHHHhhcc
Q 014373 375 -YAIVLSKSP-----STSNIISLHSTRIATFN 400 (426)
Q Consensus 375 -~~i~~~~~~-----~~~~~~~~~~~~~~~~~ 400 (426)
||+++.|-. +..|++|+++.-.+.+.
T Consensus 439 RfGl~~VD~~~~~~~~~~R~pK~S~~wy~~ii 470 (478)
T PRK09593 439 RYGFIYVDRDNEGKGTLKRSKKKSFDWYKKVI 470 (478)
T ss_pred eeceEEECCCCCCCcccceecccHHHHHHHHH
Confidence 888887644 45788888887776654
No 8
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=99.89 E-value=1.5e-21 Score=199.80 Aligned_cols=308 Identities=15% Similarity=0.170 Sum_probs=207.4
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCC--CCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhh
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTS--PSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQ 138 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~--~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~ 138 (426)
..+++++|+++||++|+|+.|+-+ .|+++.|. .|.+|+++++.++++|+++.++||.++|||+. |+. |+
T Consensus 65 ~Yhry~eDi~Lm~~lG~~~yRfSI----sWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H-~dl----P~ 135 (476)
T PRK09589 65 FYHRYKEDIALFAEMGFKCFRTSI----AWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSH-FEM----PY 135 (476)
T ss_pred HHHhhHHHHHHHHHcCCCEEEecc----chhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecC-CCC----CH
Confidence 357899999999999999999854 49999886 45689999999999999999999999999964 532 43
Q ss_pred HHHhhhhc-CCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCCC-----------C-
Q 014373 139 YVKWGKAA-GLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTS-----------D- 205 (426)
Q Consensus 139 y~~W~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~-----------~- 205 (426)
|.... |+ |.++++.+.|.+|.+.++++ |++ .|--|...|||++.. .
T Consensus 136 ---~L~~~yGG--------W~n~~~i~~F~~YA~~~f~~--------fgd--rVk~WiT~NEp~~~~~~~~~~~~~~~~g 194 (476)
T PRK09589 136 ---HLVTEYGG--------WRNRKLIDFFVRFAEVVFTR--------YKD--KVKYWMTFNEINNQANFSEDFAPFTNSG 194 (476)
T ss_pred ---HHHHhcCC--------cCChHHHHHHHHHHHHHHHH--------hcC--CCCEEEEecchhhhhccccccCCccccc
Confidence 54332 44 88999999999999999999 998 677899999998531 0
Q ss_pred ---CCh----h-HHHHH------HHHHHHHHHhcCCCCEEEecc--ccccCCCC-CCCc------------cCCCC---c
Q 014373 206 ---PSG----D-TLQSW------IQEMAVYVKSIDAKHLVEIGL--EGFYGPSA-PDRA------------KFNPN---S 253 (426)
Q Consensus 206 ---~~~----~-~~~~w------~~~~~~~Ir~~dp~~lV~~g~--~g~~~~~~-~~~~------------~~np~---~ 253 (426)
..+ . .++.- ..++.+++|+..|+..|.+.. ..+++.+. ++.. -.+|. .
T Consensus 195 ~~~~pg~~~~~~~~~~~h~~llAha~A~~~~~~~~~~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~~~~f~d~~~~G~ 274 (476)
T PRK09589 195 ILYSPGEDREQIMYQAAHYELVASALAVKTGHEINPDFQIGCMIAMCPIYPLTCAPNDMMMATKAMHRRYWFTDVHVRGY 274 (476)
T ss_pred cccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEeCCeeeeCCCCHHHHHHHHHHHHhccceecceeCCC
Confidence 111 0 11111 123456788888876664432 22233211 1100 00111 0
Q ss_pred ccc-------cccc--hhhh----hcCCCCcceEEEeccCCCccCC--CC--------------h--h-H--HHHHHHHH
Q 014373 254 YAT-------QVGT--DFIR----NHQTLGVDFASVHIYADSWISQ--TI--------------S--D-A--HLQFTKSW 299 (426)
Q Consensus 254 y~~-------~~g~--d~~~----~~~~~~iD~~s~H~Y~~~w~~~--~~--------------~--~-~--~~~~~~~~ 299 (426)
|.. ..+. .|.. ......+||+++++|....... .. + + . ..+..+..
T Consensus 275 YP~~~~~~~~~~~~~~~~t~~d~~~l~~g~~DFlGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~G 354 (476)
T PRK09589 275 YPQHILNYFARKGFNLDITPEDNAILAEGCVDYIGFSYYMSFATKFHEDNPQLDYVETRDLVSNPYVKASEWGWQIDPAG 354 (476)
T ss_pred CcHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEecccCcccccCCCCCCCCcccccccccCCCcccCCCCCccCcHH
Confidence 100 0000 0100 0113467999999996543211 00 0 0 0 01233455
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCCCCCC----C-CChHHHHHHHHHHHHHHHhhh-hcCCCcccccccccCCCCCCCCCC
Q 014373 300 MEAHIEDAEKYLRMPVLFTEFGVSAKDT----G-YNTSFRDTLISSVYKTLLNST-KKGGSGAGSLLWQLFPDGTDYMND 373 (426)
Q Consensus 300 l~~~~~~a~~~~~kPv~v~EfG~~~~~~----~-~~~~~r~~~~~~~~~~~~~~~-~~~~~~~G~~~W~~~~~g~~~~~d 373 (426)
|+..+....+++++||+|+|.|+...+. + ..+..|..|++.++.++.+++ .+|.++.|++.|++.|+ .+|..
T Consensus 355 l~~~L~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~V~GY~~WSl~Dn--~Ew~~ 432 (476)
T PRK09589 355 LRYSLNWFWDHYQLPLFIVENGFGAIDQREADGTVNDHYRIDYLAAHIREMKKAVVEDGVDLMGYTPWGCIDL--VSAGT 432 (476)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeecccccc--ccccC
Confidence 6666665555589999999999985431 1 347789999999999999998 78999999999999999 66654
Q ss_pred -----CceEEeCCCc-----cHHHHHHHHHHHHhhcc
Q 014373 374 -----GYAIVLSKSP-----STSNIISLHSTRIATFN 400 (426)
Q Consensus 374 -----g~~i~~~~~~-----~~~~~~~~~~~~~~~~~ 400 (426)
+||+++.|-. +..|++|+++.-.+.+.
T Consensus 433 G~y~~RfGlv~VD~~~~~~~t~~R~pK~S~~wy~~~i 469 (476)
T PRK09589 433 GEMKKRYGFIYVDKDNEGKGTLERSRKKSFYWYRDVI 469 (476)
T ss_pred CccccceeeEEEcCCCCCCcccccccccHHHHHHHHH
Confidence 4788887654 45789999987776654
No 9
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=99.89 E-value=1.6e-21 Score=215.42 Aligned_cols=259 Identities=14% Similarity=0.162 Sum_probs=171.3
Q ss_pred cCccchhcccccccCC-----------CCCc--EEEeCCeEEECCeEEEEEEeeccchhhhccCCCChHHHHHHHHHHHH
Q 014373 8 FPSLQRIYDLQVREDD-----------DWQM--VQKQGNQFVVNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASS 74 (426)
Q Consensus 8 ~~~~~~~~~~~~~~~~-----------~~~f--v~~~g~~f~~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~ 74 (426)
+|+.|.||++.+.... +.|| |++++++|.+||+|++++|+|.|..........+++.+++||..||+
T Consensus 303 s~e~P~LY~l~v~l~~~~g~v~d~~~~~~GfR~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~ 382 (1027)
T PRK09525 303 SAETPNLYRAVVSLLDADGTLIEAEAYDVGFRKVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQ 382 (1027)
T ss_pred CCCCCeeEEEEEEEEeCCCcEEEEEEeeEEEEEEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHH
Confidence 5889999998875421 4677 77789999999999999999987432222234578999999999999
Q ss_pred CCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhHHHhhhhcCCCCCCCC
Q 014373 75 AGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDD 154 (426)
Q Consensus 75 ~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~g~~~~~~~ 154 (426)
+|+|+||+++.. +. .+++++|.++||+|+-...- + .. |+. ...
T Consensus 383 ~g~NaVR~sHyP--------~~------------p~fydlcDe~GilV~dE~~~-e-~h-g~~--------------~~~ 425 (1027)
T PRK09525 383 HNFNAVRCSHYP--------NH------------PLWYELCDRYGLYVVDEANI-E-TH-GMV--------------PMN 425 (1027)
T ss_pred CCCCEEEecCCC--------CC------------HHHHHHHHHcCCEEEEecCc-c-cc-CCc--------------ccc
Confidence 999999996431 11 26789999999999887521 1 11 110 001
Q ss_pred CcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCEEEec
Q 014373 155 EFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIG 234 (426)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~g 234 (426)
....+|+..+.+.+.++.+|.| ++|||+|++|.++||+... .. ..+|.+.+|++||.++|+..
T Consensus 426 ~~~~dp~~~~~~~~~~~~mV~R--------drNHPSIi~WSlgNE~~~g-----~~----~~~l~~~~k~~DptRpV~y~ 488 (1027)
T PRK09525 426 RLSDDPRWLPAMSERVTRMVQR--------DRNHPSIIIWSLGNESGHG-----AN----HDALYRWIKSNDPSRPVQYE 488 (1027)
T ss_pred CCCCCHHHHHHHHHHHHHHHHh--------CCCCCEEEEEeCccCCCcC-----hh----HHHHHHHHHhhCCCCcEEEC
Confidence 2345788899999999999999 9999999999999998642 12 36788999999999999764
Q ss_pred cccccCCCCCCCccCCCCcccccccchhhhhcCCCCcceEEEeccCCC-ccCCCChhHHHHHHHHHHHHHHHHHHH-hCC
Q 014373 235 LEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDFASVHIYADS-WISQTISDAHLQFTKSWMEAHIEDAEK-YLR 312 (426)
Q Consensus 235 ~~g~~~~~~~~~~~~np~~y~~~~g~d~~~~~~~~~iD~~s~H~Y~~~-w~~~~~~~~~~~~~~~~l~~~~~~a~~-~~~ 312 (426)
..+. . ....|+++. +|+.. +.. ...... ...+... +.. ..+
T Consensus 489 ~~~~-~---------------------------~~~~Dv~~~-my~~~~~~~--~~~~~~---~~~~~~~---~~~~~~~ 531 (1027)
T PRK09525 489 GGGA-D---------------------------TAATDIICP-MYARVDEDQ--PFPAVP---KWSIKKW---ISLPGET 531 (1027)
T ss_pred CCCC-C---------------------------CCccccccC-CCCCccccc--cccccc---hHHHHHH---HhcCCCC
Confidence 2110 0 112455553 33321 110 000000 0012221 111 136
Q ss_pred CcEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHhhhhcCCCcccccccccCCCCC
Q 014373 313 MPVLFTEFGVSAKDTGYNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGT 368 (426)
Q Consensus 313 kPv~v~EfG~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~ 368 (426)
||+++.|+|-+...+ ... ++..++.+.+ .....|.++|.|.|+|.
T Consensus 532 kP~i~cEY~Hamgn~---~g~----l~~yw~~~~~----~~~~~GgfIW~w~Dqg~ 576 (1027)
T PRK09525 532 RPLILCEYAHAMGNS---LGG----FAKYWQAFRQ----YPRLQGGFIWDWVDQGL 576 (1027)
T ss_pred CCEEEEechhcccCc---Ccc----HHHHHHHHhc----CCCeeEEeeEeccCcce
Confidence 999999999765432 111 3333443432 35589999999998865
No 10
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=99.89 E-value=2.7e-21 Score=197.60 Aligned_cols=307 Identities=14% Similarity=0.170 Sum_probs=209.0
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCC-CCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhH
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTS-PSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQY 139 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~-~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y 139 (426)
..+++++|+++|+++|+|+.|+-+ .|+++.|. +|.+|+++++.++++|+.+.++||.+||||++ |+ +|+
T Consensus 51 ~yhry~eDi~L~~~lG~~~yRfSI----sWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H-~d----lP~- 120 (467)
T TIGR01233 51 FYHKYPVDLELAEEYGVNGIRISI----AWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHH-FD----TPE- 120 (467)
T ss_pred hhhhHHHHHHHHHHcCCCEEEEec----chhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccC-CC----CcH-
Confidence 357999999999999999999944 49999885 57899999999999999999999999999974 53 244
Q ss_pred HHhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCCCC--------CCh---
Q 014373 140 VKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSD--------PSG--- 208 (426)
Q Consensus 140 ~~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~--------~~~--- 208 (426)
|....|+ |.++++.+.|.+|.+.++++ |++ |--|...|||++... +.+
T Consensus 121 --~L~~~GG--------W~n~~~v~~F~~YA~~~f~~--------fgd---Vk~WiT~NEP~~~~~~gy~~G~~~Pg~~~ 179 (467)
T TIGR01233 121 --ALHSNGD--------FLNRENIEHFIDYAAFCFEE--------FPE---VNYWTTFNEIGPIGDGQYLVGKFPPGIKY 179 (467)
T ss_pred --HHHHcCC--------CCCHHHHHHHHHHHHHHHHH--------hCC---CCEEEEecchhhhhhccchhcccCCCccc
Confidence 5544454 89999999999999999999 983 778999999986432 111
Q ss_pred ---hHHHHH------HHHHHHHHHhcCCCCEEEecccc--ccCCC--CCCCc-------------cCCCC---cccc---
Q 014373 209 ---DTLQSW------IQEMAVYVKSIDAKHLVEIGLEG--FYGPS--APDRA-------------KFNPN---SYAT--- 256 (426)
Q Consensus 209 ---~~~~~w------~~~~~~~Ir~~dp~~lV~~g~~g--~~~~~--~~~~~-------------~~np~---~y~~--- 256 (426)
..++.. ..++..++|+.+|+..|.+-... +++.+ .+... -.+|. .|..
T Consensus 180 ~~~~~~~a~hn~l~AHa~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~~D~~aA~~~~~~~~~~f~d~~~~G~Yp~~~~ 259 (467)
T TIGR01233 180 DLAKVFQSHHNMMVSHARAVKLYKDKGYKGEIGVVHALPTKYPYDPENPADVRAAELEDIIHNKFILDATYLGHYSDKTM 259 (467)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCceeEECCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHH
Confidence 111111 12445678888888777654322 23321 11100 00111 0100
Q ss_pred --c-----cc---chhhh----hcC--CCCcceEEEeccCCCccCC-----------C--------------------C-
Q 014373 257 --Q-----VG---TDFIR----NHQ--TLGVDFASVHIYADSWISQ-----------T--------------------I- 288 (426)
Q Consensus 257 --~-----~g---~d~~~----~~~--~~~iD~~s~H~Y~~~w~~~-----------~--------------------~- 288 (426)
. .+ ..+.. ... ...+||+++++|....... . .
T Consensus 260 ~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (467)
T TIGR01233 260 EGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSDWMQAFDGETEIIHNGKGEKGSSKYQIKGVGRRVAPDYV 339 (467)
T ss_pred HHHHhhhhccCCCCCCCHHHHHHHhccCCCCCEEEEccccceeeccCCCccccccCCccccCcccccCCCcccccCCCCC
Confidence 0 00 00000 000 2357999999995432110 0 0
Q ss_pred hhHH--HHHHHHHHHHHHHHHHHhCCC--cEEEEecCCCCCC---CC-CChHHHHHHHHHHHHHHHhhhhcCCCcccccc
Q 014373 289 SDAH--LQFTKSWMEAHIEDAEKYLRM--PVLFTEFGVSAKD---TG-YNTSFRDTLISSVYKTLLNSTKKGGSGAGSLL 360 (426)
Q Consensus 289 ~~~~--~~~~~~~l~~~~~~a~~~~~k--Pv~v~EfG~~~~~---~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~ 360 (426)
.... .+..+..|+..+....+++++ ||+|+|.|+...+ .+ ..+..|..|++.++.++.+++.+|.++.|++.
T Consensus 340 ~~t~~gw~i~P~Gl~~~L~~~~~~Y~~~ppi~ItENG~~~~d~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~v~GY~~ 419 (467)
T TIGR01233 340 PRTDWDWIIYPEGLYDQIMRVKNDYPNYKKIYITENGLGYKDEFVDNTVYDDGRIDYVKQHLEVLSDAIADGANVKGYFI 419 (467)
T ss_pred CcCCCCCeeChHHHHHHHHHHHHHcCCCCCEEEeCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEee
Confidence 0000 122345566666655555776 6999999998532 12 35788999999999999999999999999999
Q ss_pred cccCCCCCCCCCC----CceEEeCCCccHHHHHHHHHHHHhhcc
Q 014373 361 WQLFPDGTDYMND----GYAIVLSKSPSTSNIISLHSTRIATFN 400 (426)
Q Consensus 361 W~~~~~g~~~~~d----g~~i~~~~~~~~~~~~~~~~~~~~~~~ 400 (426)
|++.|+ .+|.. .||+++.|-++..|++|+++.-.+.+-
T Consensus 420 WSl~Dn--~Ew~~Gy~~RfGLv~VD~~t~~R~~K~S~~wy~~ii 461 (467)
T TIGR01233 420 WSLMDV--FSWSNGYEKRYGLFYVDFDTQERYPKKSAHWYKKLA 461 (467)
T ss_pred ccchhh--hchhccccCccceEEECCCCCccccccHHHHHHHHH
Confidence 999999 56643 688888887778899999887776554
No 11
>PLN02998 beta-glucosidase
Probab=99.89 E-value=1.9e-21 Score=199.32 Aligned_cols=309 Identities=16% Similarity=0.182 Sum_probs=205.7
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCC-CCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhH
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTS-PSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQY 139 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~-~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y 139 (426)
...++++|++.||++|+|+.|+-+ .|++++|. .|.+|+++++.++++|+++.++||.++|||+. |+. |+
T Consensus 80 ~Yhry~EDi~lmk~lG~~~YRfSI----sWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H-~dl----P~- 149 (497)
T PLN02998 80 QYHKYKEDVKLMADMGLEAYRFSI----SWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHH-FDL----PQ- 149 (497)
T ss_pred HHHhhHHHHHHHHHcCCCeEEeec----cHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecC-CCC----CH-
Confidence 357999999999999999999844 49999886 57799999999999999999999999999964 542 43
Q ss_pred HHhhhhc-CCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCCCCC--------Chh-
Q 014373 140 VKWGKAA-GLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDP--------SGD- 209 (426)
Q Consensus 140 ~~W~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~~--------~~~- 209 (426)
|.... |+ |.+++..+.|.+|.+.+++| |+| .|--|.+.|||++.... .+.
T Consensus 150 --~L~~~yGG--------W~n~~~v~~F~~YA~~~~~~--------fgd--rVk~WiT~NEP~~~~~~gy~~G~~~Pg~~ 209 (497)
T PLN02998 150 --ALEDEYGG--------WLSQEIVRDFTAYADTCFKE--------FGD--RVSHWTTINEVNVFALGGYDQGITPPARC 209 (497)
T ss_pred --HHHHhhCC--------cCCchHHHHHHHHHHHHHHH--------hcC--cCCEEEEccCcchhhhcchhhcccCCCcc
Confidence 54432 44 88999999999999999999 999 67789999999865321 110
Q ss_pred ----------------HHHHH------HHHHHHHHHhc---CCCCEEEecc--ccccCCCC-CCCc-------------c
Q 014373 210 ----------------TLQSW------IQEMAVYVKSI---DAKHLVEIGL--EGFYGPSA-PDRA-------------K 248 (426)
Q Consensus 210 ----------------~~~~w------~~~~~~~Ir~~---dp~~lV~~g~--~g~~~~~~-~~~~-------------~ 248 (426)
.++.- ..++.+.+|+. +++..|.+-. ..+++.+. ++.. -
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f 289 (497)
T PLN02998 210 SPPFGLNCTKGNSSIEPYIAVHNMLLAHASATILYKQQYKYKQHGSVGISVYTYGAVPLTNSVKDKQATARVNDFYIGWI 289 (497)
T ss_pred ccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEeCCeeecCCCCHHHHHHHHHHHHHHhhhh
Confidence 11111 12334556765 5665564432 22232211 1000 0
Q ss_pred CCCC---cccc-----c-cc-chhh---hhcCCCCcceEEEeccCCCccCC---C-Ch--h-------------------
Q 014373 249 FNPN---SYAT-----Q-VG-TDFI---RNHQTLGVDFASVHIYADSWISQ---T-IS--D------------------- 290 (426)
Q Consensus 249 ~np~---~y~~-----~-~g-~d~~---~~~~~~~iD~~s~H~Y~~~w~~~---~-~~--~------------------- 290 (426)
.+|. .|.. . .. ..|. .......+||+++++|....... . .. .
T Consensus 290 ~dp~~~G~YP~~~~~~l~~~lp~~t~~d~~~i~~~~DFlGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (497)
T PLN02998 290 LHPLVFGDYPETMKTNVGSRLPAFTEEESEQVKGAFDFVGVINYMALYVKDNSSSLKPNLQDFNTDIAVEMTLVGNTSIE 369 (497)
T ss_pred hhHHhCCCcCHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEchhcCcccccCCCcCCCCccccccccccccccCCCcCCC
Confidence 0110 0100 0 00 0000 00112467999999995433210 0 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCC-cEEEEecCCCCCCCC-CChHHHHHHHHHHHHHHHhhhhcCCCcccccccccCCCCC
Q 014373 291 AHLQFTKSWMEAHIEDAEKYLRM-PVLFTEFGVSAKDTG-YNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGT 368 (426)
Q Consensus 291 ~~~~~~~~~l~~~~~~a~~~~~k-Pv~v~EfG~~~~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~ 368 (426)
...+..+.-|+..+....+++++ ||+|+|.|+...+.+ ..+..|..|++.++.++.+++.+|.++.|++.|++.|+
T Consensus 370 ~~w~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~dGv~V~GY~~WSl~Dn-- 447 (497)
T PLN02998 370 NEYANTPWSLQQILLYVKETYGNPPVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSLRKGSDVKGYFQWSLMDV-- 447 (497)
T ss_pred CCCEEChHHHHHHHHHHHHHcCCCCEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhh--
Confidence 00112344466666555555777 699999999765322 45788999999999999999999999999999999999
Q ss_pred CCCCC----CceEEeCCCc--cHHHHHHHHHHHHhhccc
Q 014373 369 DYMND----GYAIVLSKSP--STSNIISLHSTRIATFNS 401 (426)
Q Consensus 369 ~~~~d----g~~i~~~~~~--~~~~~~~~~~~~~~~~~~ 401 (426)
.+|.. +||+++.|-. +..|++|+++.-.+.+-.
T Consensus 448 fEW~~Gy~~RfGLv~VD~~~~~~~R~pK~S~~wy~~ii~ 486 (497)
T PLN02998 448 FELFGGYERSFGLLYVDFKDPSLKRSPKLSAHWYSSFLK 486 (497)
T ss_pred hchhccccCccceEEECCCCCCcceecccHHHHHHHHHh
Confidence 66643 6788887654 357888888877766543
No 12
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=99.88 E-value=3.2e-21 Score=197.48 Aligned_cols=307 Identities=13% Similarity=0.180 Sum_probs=205.8
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCC-CCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhH
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTS-PSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQY 139 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~-~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y 139 (426)
...++++|+++|+++|+|+.|+-+ +|+++.|. .|.+|+++++.++++|+.+.++||.++|||+. |+. |+
T Consensus 52 ~Y~ry~eDi~L~~~lG~~~yRfSI----sWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H-~dl----P~- 121 (469)
T PRK13511 52 FYHRYPEDLKLAEEFGVNGIRISI----AWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHH-FDT----PE- 121 (469)
T ss_pred hhhhhHHHHHHHHHhCCCEEEeec----cHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecC-CCC----cH-
Confidence 357999999999999999999844 49999886 47799999999999999999999999999964 532 43
Q ss_pred HHhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCCCC--------CCh---
Q 014373 140 VKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSD--------PSG--- 208 (426)
Q Consensus 140 ~~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~--------~~~--- 208 (426)
|....|+ |.++++.+.|.+|.+.+++| |+| |--|...|||++... +.+
T Consensus 122 --~L~~~GG--------W~n~~~v~~F~~YA~~~~~~--------fgd---Vk~W~T~NEP~~~~~~gy~~G~~~Pg~~~ 180 (469)
T PRK13511 122 --ALHSNGD--------WLNRENIDHFVRYAEFCFEE--------FPE---VKYWTTFNEIGPIGDGQYLVGKFPPGIKY 180 (469)
T ss_pred --HHHHcCC--------CCCHHHHHHHHHHHHHHHHH--------hCC---CCEEEEccchhhhhhcchhhcccCCCCCc
Confidence 5544454 89999999999999999999 988 778999999986531 111
Q ss_pred ---hHHHHH------HHHHHHHHHhcCCCCEEEeccc--cccCCC--CCCCc-------------cCCCC---ccccc--
Q 014373 209 ---DTLQSW------IQEMAVYVKSIDAKHLVEIGLE--GFYGPS--APDRA-------------KFNPN---SYATQ-- 257 (426)
Q Consensus 209 ---~~~~~w------~~~~~~~Ir~~dp~~lV~~g~~--g~~~~~--~~~~~-------------~~np~---~y~~~-- 257 (426)
..++.- ..++.+++|+..++..|.+-.. .+++.+ .++.. -.+|. .|...
T Consensus 181 ~~~~~~~~~hn~llAHa~A~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~ 260 (469)
T PRK13511 181 DLAKVFQSHHNMMVAHARAVKLFKDKGYKGEIGVVHALPTKYPIDPDNPEDVRAAELEDIIHNKFILDATYLGYYSEETM 260 (469)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCceEeeCCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHH
Confidence 111111 1234567888777766654321 223221 11100 00111 01000
Q ss_pred ---------ccc--hhhh----hcCC--CCcceEEEeccCCCccCCC-------------------------------C-
Q 014373 258 ---------VGT--DFIR----NHQT--LGVDFASVHIYADSWISQT-------------------------------I- 288 (426)
Q Consensus 258 ---------~g~--d~~~----~~~~--~~iD~~s~H~Y~~~w~~~~-------------------------------~- 288 (426)
.|. .|.. .... ..+||+++++|........ .
T Consensus 261 ~~~~~~~~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (469)
T PRK13511 261 EGVNHILEANGGSLDIRDEDFEILKAAKDLNDFLGINYYMSDWMRAYDGETEIIHNGTGEKGSSKYQLKGVGERVKPPDV 340 (469)
T ss_pred HHHHHhhhhcCCCCCCCHHHHHHHhcCCCCCCEEEechhhcceeecCCCccccccCCCCccccccccccCccccccCCCC
Confidence 000 0100 0001 2479999999954332100 0
Q ss_pred hhHH--HHHHHHHHHHHHHHHHHhCCC--cEEEEecCCCCCCC-----CCChHHHHHHHHHHHHHHHhhhhcCCCccccc
Q 014373 289 SDAH--LQFTKSWMEAHIEDAEKYLRM--PVLFTEFGVSAKDT-----GYNTSFRDTLISSVYKTLLNSTKKGGSGAGSL 359 (426)
Q Consensus 289 ~~~~--~~~~~~~l~~~~~~a~~~~~k--Pv~v~EfG~~~~~~-----~~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~ 359 (426)
.... .+..+.-|+..+....+++++ ||+|+|.|+...+. ...+..|..|++.++.++.+++++|.++.|++
T Consensus 341 ~~~~~gw~i~P~Gl~~~l~~~~~~Y~~~~pi~ITENG~~~~d~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~ 420 (469)
T PRK13511 341 PTTDWDWIIYPQGLYDQLMRIKKDYPNYKKIYITENGLGYKDEFVDGKTVDDDKRIDYVKQHLEVISDAISDGANVKGYF 420 (469)
T ss_pred CcCCCCCeECcHHHHHHHHHHHHHcCCCCCEEEecCCcCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 0000 011233455555555444665 79999999974431 13467899999999999999999999999999
Q ss_pred ccccCCCCCCCCCC----CceEEeCCCccHHHHHHHHHHHHhhcc
Q 014373 360 LWQLFPDGTDYMND----GYAIVLSKSPSTSNIISLHSTRIATFN 400 (426)
Q Consensus 360 ~W~~~~~g~~~~~d----g~~i~~~~~~~~~~~~~~~~~~~~~~~ 400 (426)
.|++.|+ .+|.+ .||+++.|-++..|++|.++.-.+.+.
T Consensus 421 ~WSl~Dn--fEW~~Gy~~RfGl~~VD~~~~~R~pK~S~~wy~~~i 463 (469)
T PRK13511 421 IWSLMDV--FSWSNGYEKRYGLFYVDFETQERYPKKSAYWYKKLA 463 (469)
T ss_pred ecccccc--cchhcCccCccceEEECCCcCccccccHHHHHHHHH
Confidence 9999999 66654 577888887777888988887776654
No 13
>PLN02814 beta-glucosidase
Probab=99.88 E-value=3.2e-21 Score=198.03 Aligned_cols=310 Identities=15% Similarity=0.207 Sum_probs=206.6
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCC-CCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhH
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTS-PSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQY 139 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~-~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y 139 (426)
..+++++|+++||++|+|+.|+-+ .|++++|. +|.+|+++++.++++|+++.++||+++|||+. |+. |+
T Consensus 75 ~Yhry~EDI~L~k~lG~~ayRfSI----sWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H-~dl----P~- 144 (504)
T PLN02814 75 GYHKYKEDVKLMAEMGLESFRFSI----SWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYH-YDL----PQ- 144 (504)
T ss_pred HHHhhHHHHHHHHHcCCCEEEEec----cHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecC-CCC----CH-
Confidence 368999999999999999999844 49999885 57899999999999999999999999999964 543 33
Q ss_pred HHhhhhc-CCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCCCCC-------Ch---
Q 014373 140 VKWGKAA-GLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDP-------SG--- 208 (426)
Q Consensus 140 ~~W~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~~-------~~--- 208 (426)
|.... |+ |.+++..+.|.+|.+.+++| |++ .|-.|.+.|||++.... ++
T Consensus 145 --~L~~~yGG--------W~n~~~i~~F~~YA~~~f~~--------fgd--rVk~WiT~NEP~~~~~~gy~~G~~pg~~~ 204 (504)
T PLN02814 145 --SLEDEYGG--------WINRKIIEDFTAFADVCFRE--------FGE--DVKLWTTINEATIFAIGSYGQGIRYGHCS 204 (504)
T ss_pred --HHHHhcCC--------cCChhHHHHHHHHHHHHHHH--------hCC--cCCEEEeccccchhhhcccccCcCCCCCC
Confidence 55442 54 89999999999999999999 998 67789999999854210 00
Q ss_pred --------------hHHHHH------HHHHHHHHHhc---CCCCEEEecc--ccccCCCC-CCCc-------------cC
Q 014373 209 --------------DTLQSW------IQEMAVYVKSI---DAKHLVEIGL--EGFYGPSA-PDRA-------------KF 249 (426)
Q Consensus 209 --------------~~~~~w------~~~~~~~Ir~~---dp~~lV~~g~--~g~~~~~~-~~~~-------------~~ 249 (426)
+.++.- ..++.+++|+. .|+..|.+-. ..+++.+. ++.. -.
T Consensus 205 ~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~f~ 284 (504)
T PLN02814 205 PNKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFAFGLSPYTNSKDDEIATQRAKAFLYGWML 284 (504)
T ss_pred cccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCceeecCCCCHHHHHHHHHHHHHhhhhhh
Confidence 011111 12335567764 6665554432 12232211 1000 00
Q ss_pred CCC---cccc----ccc-c--hhh---hhcCCCCcceEEEeccCCCccCC---C--------Ch-------------hHH
Q 014373 250 NPN---SYAT----QVG-T--DFI---RNHQTLGVDFASVHIYADSWISQ---T--------IS-------------DAH 292 (426)
Q Consensus 250 np~---~y~~----~~g-~--d~~---~~~~~~~iD~~s~H~Y~~~w~~~---~--------~~-------------~~~ 292 (426)
+|. .|.. ..+ . .|. .......+||+++++|....... . .. .+.
T Consensus 285 dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (504)
T PLN02814 285 KPLVFGDYPDEMKRTLGSRLPVFSEEESEQVKGSSDFVGIIHYTTFYVTNRPAPSIFPSMNEGFFTDMGAYIISAGNSSF 364 (504)
T ss_pred HHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEcccccceeccCCCCCcccccCCCcccccccccCCCCCcCC
Confidence 110 0100 000 0 000 00012467999999995432210 0 00 000
Q ss_pred --HHHHHHHHHHHHHHHHHhCCC-cEEEEecCCCCCCCC-CChHHHHHHHHHHHHHHHhhhhcCCCcccccccccCCCCC
Q 014373 293 --LQFTKSWMEAHIEDAEKYLRM-PVLFTEFGVSAKDTG-YNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGT 368 (426)
Q Consensus 293 --~~~~~~~l~~~~~~a~~~~~k-Pv~v~EfG~~~~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~ 368 (426)
.+..+.-|+..+....+++++ ||+|+|.|+...+.+ ..+..|..|++.++.++.+++.+|.++.|++.|++.|+
T Consensus 365 ~gWei~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~dGv~V~GY~~WSllDn-- 442 (504)
T PLN02814 365 FEFDATPWGLEGILEHIKQSYNNPPIYILENGMPMKHDSTLQDTPRVEFIQAYIGAVLNAIKNGSDTRGYFVWSMIDL-- 442 (504)
T ss_pred CCCeECcHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhh--
Confidence 112344466656555544666 799999999755322 45789999999999999999999999999999999999
Q ss_pred CCCCC----CceEEeCCCc--cHHHHHHHHHHHHhhcccC
Q 014373 369 DYMND----GYAIVLSKSP--STSNIISLHSTRIATFNSL 402 (426)
Q Consensus 369 ~~~~d----g~~i~~~~~~--~~~~~~~~~~~~~~~~~~~ 402 (426)
.+|.. .||+++.|-. +..|++|+++.-.+.+-..
T Consensus 443 fEW~~Gy~~RfGLvyVD~~~~~~~R~pK~S~~wy~~~i~~ 482 (504)
T PLN02814 443 YELLGGYTTSFGMYYVNFSDPGRKRSPKLSASWYTGFLNG 482 (504)
T ss_pred hchhccccCccceEEECCCCCCcceeeecHHHHHHHHHhc
Confidence 66643 6778887655 3478999988877766544
No 14
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=99.88 E-value=6.1e-21 Score=195.14 Aligned_cols=307 Identities=16% Similarity=0.219 Sum_probs=205.8
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCC--CCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhH
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTS--PSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQY 139 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~--~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y 139 (426)
..++++|+++|+++|+|+.|+-+ .|+++.|. .+.+|+++++.++++|+++.++||.++|||+. |+ +|+
T Consensus 68 Yhry~EDI~Lm~elG~~~yRfSI----sWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H-~d----lP~- 137 (477)
T PRK15014 68 YGHYKEDIKLFAEMGFKCFRTSI----AWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSH-FE----MPL- 137 (477)
T ss_pred ccccHHHHHHHHHcCCCEEEecc----cceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeC-CC----CCH-
Confidence 57899999999999999999954 38999886 45689999999999999999999999999964 43 244
Q ss_pred HHhhhhc-CCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCC-----C-----C---
Q 014373 140 VKWGKAA-GLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCT-----S-----D--- 205 (426)
Q Consensus 140 ~~W~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~-----~-----~--- 205 (426)
|.... |+ |.++++.+.|.+|++.+++| |++ .|-.|...|||+.. . .
T Consensus 138 --~L~~~yGG--------W~n~~~~~~F~~Ya~~~f~~--------fgd--rVk~WiT~NEp~~~~~~~~~~~gy~~~g~ 197 (477)
T PRK15014 138 --HLVQQYGS--------WTNRKVVDFFVRFAEVVFER--------YKH--KVKYWMTFNEINNQRNWRAPLFGYCCSGV 197 (477)
T ss_pred --HHHHhcCC--------CCChHHHHHHHHHHHHHHHH--------hcC--cCCEEEEecCccccccccccccccccccc
Confidence 54332 44 88999999999999999999 999 47789999999743 1 0
Q ss_pred --CCh----h-HHHHH------HHHHHHHHHhcCCCCEEEeccc--cccCCCC-CCCc------------cCCCC---cc
Q 014373 206 --PSG----D-TLQSW------IQEMAVYVKSIDAKHLVEIGLE--GFYGPSA-PDRA------------KFNPN---SY 254 (426)
Q Consensus 206 --~~~----~-~~~~w------~~~~~~~Ir~~dp~~lV~~g~~--g~~~~~~-~~~~------------~~np~---~y 254 (426)
+.+ . .++.- ..++.+++|+..|+..|.+-.. .+++.+. ++.. -.+|. .|
T Consensus 198 ~~~~~~~~~~~~~~~~h~~llAHa~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~f~d~~~~G~Y 277 (477)
T PRK15014 198 VYTEHENPEETMYQVLHHQFVASALAVKAARRINPEMKVGCMLAMVPLYPYSCNPDDVMFAQESMRERYVFTDVQLRGYY 277 (477)
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCceeccCCCCHHHHHHHHHHHHhcccccccccCCCC
Confidence 111 0 11111 1234567888888766655322 2233211 1100 00111 01
Q ss_pred cc-------cccc--hhh----hhcCCCCcceEEEeccCCCccCC---------------CCh--h-H--HHHHHHHHHH
Q 014373 255 AT-------QVGT--DFI----RNHQTLGVDFASVHIYADSWISQ---------------TIS--D-A--HLQFTKSWME 301 (426)
Q Consensus 255 ~~-------~~g~--d~~----~~~~~~~iD~~s~H~Y~~~w~~~---------------~~~--~-~--~~~~~~~~l~ 301 (426)
.. ..+. .+. .......+||+++++|....... .++ . . ..+..+..|+
T Consensus 278 P~~~~~~~~~~~~~~~~~~~d~~~i~~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~ 357 (477)
T PRK15014 278 PSYVLNEWERRGFNIKMEDGDLDVLREGTCDYLGFSYYMTNAVKAEGGTGDAISGFEGSVPNPYVKASDWGWQIDPVGLR 357 (477)
T ss_pred CHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEcceeCeeeccCCCCCCCccccccccCCCCcccCCCCCccCcHHHH
Confidence 00 0000 000 00112467999999995432210 000 0 0 0123445566
Q ss_pred HHHHHHHHhCCCcEEEEecCCCCCCC----C-CChHHHHHHHHHHHHHHHhhhh-cCCCcccccccccCCCCCCCCCCC-
Q 014373 302 AHIEDAEKYLRMPVLFTEFGVSAKDT----G-YNTSFRDTLISSVYKTLLNSTK-KGGSGAGSLLWQLFPDGTDYMNDG- 374 (426)
Q Consensus 302 ~~~~~a~~~~~kPv~v~EfG~~~~~~----~-~~~~~r~~~~~~~~~~~~~~~~-~~~~~~G~~~W~~~~~g~~~~~dg- 374 (426)
..+....+++++||+|+|.|+...+. + ..+..|..|++.++.++.+++. .|.++.|++.|++.|+ .+|..|
T Consensus 358 ~~l~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~~dGv~v~GY~~WSl~Dn--fEw~~G~ 435 (477)
T PRK15014 358 YALCELYERYQKPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCIDC--VSFTTGQ 435 (477)
T ss_pred HHHHHHHHhcCCCEEEeCCCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhh--hcccCCC
Confidence 66655555589999999999985431 1 3478899999999999999995 8999999999999999 666544
Q ss_pred ----ceEEeCCCc-----cHHHHHHHHHHHHhhcc
Q 014373 375 ----YAIVLSKSP-----STSNIISLHSTRIATFN 400 (426)
Q Consensus 375 ----~~i~~~~~~-----~~~~~~~~~~~~~~~~~ 400 (426)
||+++.|-. +..|++|+++.-.+.+.
T Consensus 436 y~~RfGl~~VD~~~~~~~~~~R~pK~S~~wy~~ii 470 (477)
T PRK15014 436 YSKRYGFIYVNKHDDGTGDMSRSRKKSFNWYKEVI 470 (477)
T ss_pred ccCccceEEECCCCCCCcccceecccHHHHHHHHH
Confidence 888887543 45788998887766554
No 15
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=99.88 E-value=5.7e-21 Score=194.98 Aligned_cols=307 Identities=17% Similarity=0.227 Sum_probs=206.2
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCC--CCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhH
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTS--PSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQY 139 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~--~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y 139 (426)
..++++|+++|+++|+|+.|+-+ .|+++.|. ++.+|+++++.+|++|++++++||.+||+|+. |+ +|+
T Consensus 70 Yhry~eDi~l~~~lG~~~yR~si----~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H-~~----~P~- 139 (474)
T PRK09852 70 YHRYKEDIALMAEMGFKVFRTSI----AWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCH-FD----VPM- 139 (474)
T ss_pred hhhhHHHHHHHHHcCCCeEEeec----eeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeC-CC----CCH-
Confidence 57899999999999999999954 38888876 45689999999999999999999999999964 43 233
Q ss_pred HHhhhh-cCCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCCCC----------CCh
Q 014373 140 VKWGKA-AGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSD----------PSG 208 (426)
Q Consensus 140 ~~W~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~----------~~~ 208 (426)
|... .|+ |.++++.+.|.+|++.+++| |++ .|-.|...|||+.... ..+
T Consensus 140 --~l~~~~GG--------W~~~~~~~~F~~ya~~~~~~--------fgd--~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~ 199 (474)
T PRK09852 140 --HLVTEYGS--------WRNRKMVEFFSRYARTCFEA--------FDG--LVKYWLTFNEINIMLHSPFSGAGLVFEEG 199 (474)
T ss_pred --HHHHhcCC--------CCCHHHHHHHHHHHHHHHHH--------hcC--cCCeEEeecchhhhhccCccccCcccCCC
Confidence 4432 243 88999999999999999999 998 5678999999984421 111
Q ss_pred ----h-HHHHH------HHHHHHHHHhcCCCCEEEeccc--cccCCCC-CCCc------------cCCCC---cccc---
Q 014373 209 ----D-TLQSW------IQEMAVYVKSIDAKHLVEIGLE--GFYGPSA-PDRA------------KFNPN---SYAT--- 256 (426)
Q Consensus 209 ----~-~~~~w------~~~~~~~Ir~~dp~~lV~~g~~--g~~~~~~-~~~~------------~~np~---~y~~--- 256 (426)
. .++.- ..++.+++|+..|+..|.+-.. .+++.+. ++.. -.+|. .|..
T Consensus 200 ~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~AA~~~~~~~~~~~d~~~~G~YP~~~~ 279 (474)
T PRK09852 200 ENQDQVKYQAAHHELVASALATKIAHEVNPQNQVGCMLAGGNFYPYSCKPEDVWAALEKDRENLFFIDVQARGAYPAYSA 279 (474)
T ss_pred CCchHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeeeeCCCCHHHHHHHHHHHHHhhhhcchhhCCCccHHHH
Confidence 0 11111 1234566788888766655422 2233211 1100 00110 0100
Q ss_pred ----cccc--hhhh---hcCCCCcceEEEeccCCCccCCC---------C-------h--h-H--HHHHHHHHHHHHHHH
Q 014373 257 ----QVGT--DFIR---NHQTLGVDFASVHIYADSWISQT---------I-------S--D-A--HLQFTKSWMEAHIED 306 (426)
Q Consensus 257 ----~~g~--d~~~---~~~~~~iD~~s~H~Y~~~w~~~~---------~-------~--~-~--~~~~~~~~l~~~~~~ 306 (426)
..+. +|.. ......+||+++++|........ . + + . ..+..+.-|+..+..
T Consensus 280 ~~~~~~~~~p~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~gw~i~P~Gl~~~l~~ 359 (474)
T PRK09852 280 RVFREKGVTIDKAPGDDEILKNTVDFVSFSYYASRCASAEMNANNSSAANVVKSLRNPYLQVSDWGWGIDPLGLRITMNM 359 (474)
T ss_pred HHHHhcCCCCCCCHHHHHHhcCCCCEEEEccccCeecccCCCCCCCCcCCceecccCCCcccCCCCCeeChHHHHHHHHH
Confidence 0000 0000 00124679999999954332100 0 0 0 0 012334556666655
Q ss_pred HHHhCCCcEEEEecCCCCCCC----C-CChHHHHHHHHHHHHHHHhhhhcCCCcccccccccCCCCCCCCCCC-----ce
Q 014373 307 AEKYLRMPVLFTEFGVSAKDT----G-YNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGTDYMNDG-----YA 376 (426)
Q Consensus 307 a~~~~~kPv~v~EfG~~~~~~----~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~~~~~dg-----~~ 376 (426)
..+++++||+|+|.|+...+. + ..+..|..|++.++.++.+++.+|.++.|++.|++.|+ .+|..| ||
T Consensus 360 ~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn--~Ew~~G~y~~RfG 437 (474)
T PRK09852 360 MYDRYQKPLFLVENGLGAKDEIAANGEINDDYRISYLREHIRAMGEAIADGIPLMGYTTWGCIDL--VSASTGEMSKRYG 437 (474)
T ss_pred HHHhcCCCEEEeCCCCCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEeeccccc--ccccCCCccceee
Confidence 555589999999999985431 1 35778999999999999999999999999999999999 666544 88
Q ss_pred EEeCCCc-----cHHHHHHHHHHHHhhcc
Q 014373 377 IVLSKSP-----STSNIISLHSTRIATFN 400 (426)
Q Consensus 377 i~~~~~~-----~~~~~~~~~~~~~~~~~ 400 (426)
+++.|-+ +..|++|+++.-.+.+-
T Consensus 438 Lv~VD~~~~~~~t~~R~pK~S~~wy~~ii 466 (474)
T PRK09852 438 FVYVDRDDAGNGTLTRTRKKSFWWYKKVI 466 (474)
T ss_pred eEEECCCCCCCcccceecccHHHHHHHHH
Confidence 8887654 45788999887776654
No 16
>PLN02849 beta-glucosidase
Probab=99.87 E-value=7.5e-21 Score=195.24 Aligned_cols=308 Identities=16% Similarity=0.201 Sum_probs=204.4
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCC-CCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhH
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTS-PSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQY 139 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~-~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y 139 (426)
...++++|+++||++|+|+.|+-+ .|++++|. .|.+|+++++.++++|+++.++||.++|||+. |+. |+
T Consensus 77 ~YhrY~eDI~Lm~~lG~~aYRfSI----sWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H-~dl----P~- 146 (503)
T PLN02849 77 GYHKYKEDVKLMVETGLDAFRFSI----SWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFH-YDH----PQ- 146 (503)
T ss_pred HHHhHHHHHHHHHHcCCCeEEEec----cHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecC-CCC----cH-
Confidence 368999999999999999999844 49999886 36799999999999999999999999999964 543 33
Q ss_pred HHhhhhc-CCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCCCC--------CChh-
Q 014373 140 VKWGKAA-GLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSD--------PSGD- 209 (426)
Q Consensus 140 ~~W~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~--------~~~~- 209 (426)
|.... |+ |.++++.+.|.+|.+.+++| |+| .|--|...|||++... ..+.
T Consensus 147 --~L~~~yGG--------W~nr~~v~~F~~YA~~~f~~--------fgD--rVk~WiT~NEP~~~~~~gy~~G~~~Pg~~ 206 (503)
T PLN02849 147 --YLEDDYGG--------WINRRIIKDFTAYADVCFRE--------FGN--HVKFWTTINEANIFTIGGYNDGITPPGRC 206 (503)
T ss_pred --HHHHhcCC--------cCCchHHHHHHHHHHHHHHH--------hcC--cCCEEEEecchhhhhhchhhhccCCCCcc
Confidence 55442 54 89999999999999999999 998 6778999999985421 1110
Q ss_pred ---------------HHHHH------HHHHHHHHHhc---CCCCEEEecc--ccccCCCC-CCCc-------------cC
Q 014373 210 ---------------TLQSW------IQEMAVYVKSI---DAKHLVEIGL--EGFYGPSA-PDRA-------------KF 249 (426)
Q Consensus 210 ---------------~~~~w------~~~~~~~Ir~~---dp~~lV~~g~--~g~~~~~~-~~~~-------------~~ 249 (426)
.++.- ..++.+++|+. .|+..|.+-. ..+++.+. ++.. -.
T Consensus 207 ~~~~~~~~~~~~~~~~~~a~hn~llAHa~A~~~~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~D~~AA~~~~~~~~~~f~ 286 (503)
T PLN02849 207 SSPGRNCSSGNSSTEPYIVGHNLLLAHASVSRLYKQKYKDMQGGSIGFSLFALGFTPSTSSKDDDIATQRAKDFYLGWML 286 (503)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEECceeecCCCCHHHHHHHHHHHHHhhhhhh
Confidence 11111 12334567765 2666665432 12233211 1100 00
Q ss_pred CCC---ccccc----c-cc--hhh---hhcCCCCcceEEEeccCCCccCC---C-----C-----------hhH---HHH
Q 014373 250 NPN---SYATQ----V-GT--DFI---RNHQTLGVDFASVHIYADSWISQ---T-----I-----------SDA---HLQ 294 (426)
Q Consensus 250 np~---~y~~~----~-g~--d~~---~~~~~~~iD~~s~H~Y~~~w~~~---~-----~-----------~~~---~~~ 294 (426)
+|. .|... . +. .|. .......+||+++++|....... . . ... ..+
T Consensus 287 dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~ 366 (503)
T PLN02849 287 EPLIFGDYPDEMKRTIGSRLPVFSKEESEQVKGSSDFIGVIHYLAASVTNIKIKPSLSGNPDFYSDMGVSLGKFSAFEYA 366 (503)
T ss_pred HHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEeccchhhcccCCCCCCCCCCCccccccCCCCCccCCCCCe
Confidence 110 01000 0 00 000 00012467999999995432210 0 0 000 012
Q ss_pred HHHHHHHHHHHHHHHhCCC-cEEEEecCCCCCC--CC-CChHHHHHHHHHHHHHHHhhhhcCCCcccccccccCCCCCCC
Q 014373 295 FTKSWMEAHIEDAEKYLRM-PVLFTEFGVSAKD--TG-YNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGTDY 370 (426)
Q Consensus 295 ~~~~~l~~~~~~a~~~~~k-Pv~v~EfG~~~~~--~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~~~ 370 (426)
..+.-|+..+....+++++ ||+|+|.|+...+ .+ ..+..|..|++.++.++.+++.+|.++.|++.|++.|+ .+
T Consensus 367 i~P~Gl~~~L~~~~~rY~~pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~dGv~V~GY~~WSl~Dn--fE 444 (503)
T PLN02849 367 VAPWAMESVLEYIKQSYGNPPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVRNGSDTRGYFVWSFMDL--YE 444 (503)
T ss_pred EChHHHHHHHHHHHHhcCCCCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhh--hc
Confidence 2344456555555545777 7999999998543 11 35788999999999999999999999999999999999 66
Q ss_pred CCC----CceEEeCCCcc--HHHHHHHHHHHHhhcc
Q 014373 371 MND----GYAIVLSKSPS--TSNIISLHSTRIATFN 400 (426)
Q Consensus 371 ~~d----g~~i~~~~~~~--~~~~~~~~~~~~~~~~ 400 (426)
|.. .||+++.|-.+ ..|++|+++.-.+.+-
T Consensus 445 W~~Gy~~RfGLi~VD~~~~~~~R~pK~S~~wy~~ii 480 (503)
T PLN02849 445 LLKGYEFSFGLYSVNFSDPHRKRSPKLSAHWYSAFL 480 (503)
T ss_pred hhccccCccceEEECCCCCCcceecccHHHHHHHHH
Confidence 643 67888876543 4789999887766554
No 17
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.87 E-value=1.1e-20 Score=187.49 Aligned_cols=303 Identities=18% Similarity=0.259 Sum_probs=203.5
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCC--CCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhH
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPS--VYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQY 139 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g--~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y 139 (426)
.+++++|+++||+||+|+.|+-+ .|+++.|.++ ..|+++|+.+|++++.|.++||.++++|+. |+. |+
T Consensus 58 YhrYkeDi~L~~emG~~~~R~SI----~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~H-fd~----P~- 127 (460)
T COG2723 58 YHRYKEDIALAKEMGLNAFRTSI----EWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYH-FDL----PL- 127 (460)
T ss_pred hhhhHHHHHHHHHcCCCEEEeee----eEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecc-cCC----cH-
Confidence 57999999999999999999954 3888887654 599999999999999999999999999965 432 43
Q ss_pred HHhhhhc-CCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCCCCC---------C--
Q 014373 140 VKWGKAA-GLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDP---------S-- 207 (426)
Q Consensus 140 ~~W~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~~---------~-- 207 (426)
|.... |+ |.|.+++..|.+|.+.+++| |++ -|--|.++|||++.... .
T Consensus 128 --~L~~~ygG--------W~nR~~i~~F~~ya~~vf~~--------f~d--kVk~W~TFNE~n~~~~~~y~~~~~~p~~~ 187 (460)
T COG2723 128 --WLQKPYGG--------WENRETVDAFARYAATVFER--------FGD--KVKYWFTFNEPNVVVELGYLYGGHPPGIV 187 (460)
T ss_pred --HHhhccCC--------ccCHHHHHHHHHHHHHHHHH--------hcC--cceEEEEecchhhhhcccccccccCCCcc
Confidence 43333 33 89999999999999999999 998 68889999999976431 0
Q ss_pred -h-hHHHHHHH------HHHHHHHhcCCC-C-EEEeccccccCCCC-CCCc--------c-----CCCC---cccc----
Q 014373 208 -G-DTLQSWIQ------EMAVYVKSIDAK-H-LVEIGLEGFYGPSA-PDRA--------K-----FNPN---SYAT---- 256 (426)
Q Consensus 208 -~-~~~~~w~~------~~~~~Ir~~dp~-~-lV~~g~~g~~~~~~-~~~~--------~-----~np~---~y~~---- 256 (426)
. ..++.... .+.+.+|++.|+ . -+++.....|+.+. ++.. . .+|. .|..
T Consensus 188 ~~~~~~qa~hh~~lA~A~avk~~~~~~~~~kIG~~~~~~p~YP~s~~p~dv~aA~~~~~~~n~~FlD~~~~G~yp~~~~~ 267 (460)
T COG2723 188 DPKAAYQVAHHMLLAHALAVKAIKKINPKGKVGIILNLTPAYPLSDKPEDVKAAENADRFHNRFFLDAQVKGEYPEYLEK 267 (460)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhCCcCceEEEeccCcCCCCCCCHHHHHHHHHHHHHhhhhhcchhhcCcCCHHHHH
Confidence 1 11222222 335667888886 3 23333334454432 2110 0 0110 0100
Q ss_pred ---ccc-------chhhhhcCCCCcceEEEeccC-CCc-----------cCCCCh-----------hHHHHHHHHHHHHH
Q 014373 257 ---QVG-------TDFIRNHQTLGVDFASVHIYA-DSW-----------ISQTIS-----------DAHLQFTKSWMEAH 303 (426)
Q Consensus 257 ---~~g-------~d~~~~~~~~~iD~~s~H~Y~-~~w-----------~~~~~~-----------~~~~~~~~~~l~~~ 303 (426)
..| .|. ..+....+||+++++|. ... ...... +-..+..++-|+..
T Consensus 268 ~~~~~~~~~~~~~~Dl-~~lk~~~~DfiG~NYY~~s~v~~~~~~~~~~~~~~~~~~~~~~p~~~~sdwGWeI~P~GL~~~ 346 (460)
T COG2723 268 ELEENGILPEIEDGDL-EILKENTVDFIGLNYYTPSRVKAAEPRYVSGYGPGGFFTSVPNPGLEVSDWGWEIYPKGLYDI 346 (460)
T ss_pred HHHhcCCCcccCcchH-HHHhcCCCCeEEEeeeeeeeEeeccCCcCCcccccccccccCCCCCcccCCCceeChHHHHHH
Confidence 000 010 01122348999999996 211 100000 00123345556666
Q ss_pred HHHHHHhCCCcEEEEecCCCCCCC----CCChHHHHHHHHHHHHHHHhhhhcCCCcccccccccCCCCCCCC----CCCc
Q 014373 304 IEDAEKYLRMPVLFTEFGVSAKDT----GYNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGTDYM----NDGY 375 (426)
Q Consensus 304 ~~~a~~~~~kPv~v~EfG~~~~~~----~~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~~~~----~dg~ 375 (426)
+....+++++|++|+|.|+...+. +..++.|..|++.++.++.+++..|..+.|++.|++.|. ..| .-+|
T Consensus 347 l~~~~~rY~~p~fItENG~G~~d~~~~~~i~DdyRI~Yl~~Hl~~v~~AI~dGv~v~GY~~Ws~iD~--~sw~~gy~kRY 424 (460)
T COG2723 347 LEKLYERYGIPLFITENGLGVKDEVDFDGINDDYRIDYLKEHLKAVKKAIEDGVDVRGYFAWSLIDN--YSWANGYKKRY 424 (460)
T ss_pred HHHHHHHhCCCeEEecCCCCcccccccCCcCchHHHHHHHHHHHHHHHHHHcCCCcccceecccccc--cchhhcccccc
Confidence 666665589999999999775542 246789999999999999999999999999999999987 333 3478
Q ss_pred eEEeCCCcc-HHHHHHHHHHHHh
Q 014373 376 AIVLSKSPS-TSNIISLHSTRIA 397 (426)
Q Consensus 376 ~i~~~~~~~-~~~~~~~~~~~~~ 397 (426)
|+++.|-++ ..|++|.++.=.+
T Consensus 425 Gli~VD~~~~~~R~~KkS~~WyK 447 (460)
T COG2723 425 GLVYVDYDTDLERTPKKSFYWYK 447 (460)
T ss_pred ccEEEcccccceeeecCceeeeH
Confidence 888877665 4667666543333
No 18
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=99.87 E-value=3.5e-22 Score=204.77 Aligned_cols=306 Identities=16% Similarity=0.246 Sum_probs=197.5
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCC--CCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhH
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTS--PSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQY 139 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~--~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y 139 (426)
..++++||+.|+++|+|+.|+.+ +|++++|. .|.+|+++++.++++|+.++++||++||+|+. |+ .|
T Consensus 57 y~~y~eDi~l~~~lg~~~yRfsi----~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H-~~----~P-- 125 (455)
T PF00232_consen 57 YHRYKEDIALMKELGVNAYRFSI----SWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYH-FD----LP-- 125 (455)
T ss_dssp HHHHHHHHHHHHHHT-SEEEEE------HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEES-S------B--
T ss_pred hhhhhHHHHHHHhhccceeeeec----chhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeee-cc----cc--
Confidence 57899999999999999999954 39999998 59999999999999999999999999999975 42 23
Q ss_pred HHhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCCCC--------CC----
Q 014373 140 VKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSD--------PS---- 207 (426)
Q Consensus 140 ~~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~--------~~---- 207 (426)
.|....|+ |.+++..+.|.+|++.+++| |++ .|--|.+.|||+.... ++
T Consensus 126 -~~l~~~gg--------w~~~~~~~~F~~Ya~~~~~~--------~gd--~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~ 186 (455)
T PF00232_consen 126 -LWLEDYGG--------WLNRETVDWFARYAEFVFER--------FGD--RVKYWITFNEPNVFALLGYLYGGFPPGRDS 186 (455)
T ss_dssp -HHHHHHTG--------GGSTHHHHHHHHHHHHHHHH--------HTT--TBSEEEEEETHHHHHHHHHTSSSSTTCSST
T ss_pred -cceeeccc--------ccCHHHHHHHHHHHHHHHHH--------hCC--CcceEEeccccceeeccccccccccccccc
Confidence 46544454 88999999999999999999 998 5777999999985321 11
Q ss_pred hhHHH-------HHHHHHHHHHHhcCCCCEEEeccc--cccCCCC--CCC---c-----------------cCCCCc---
Q 014373 208 GDTLQ-------SWIQEMAVYVKSIDAKHLVEIGLE--GFYGPSA--PDR---A-----------------KFNPNS--- 253 (426)
Q Consensus 208 ~~~~~-------~w~~~~~~~Ir~~dp~~lV~~g~~--g~~~~~~--~~~---~-----------------~~np~~--- 253 (426)
..... .-..++.+.+|+..|+..|.+... .+++.+. ++. . ...|..
T Consensus 187 ~~~~~~~~h~~l~AHa~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~ 266 (455)
T PF00232_consen 187 LKAFYQAAHNLLLAHAKAVKAIKEKYPDGKIGIALNFSPFYPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKE 266 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCTSEEEEEEEEEEEEESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHH
T ss_pred cchhhHHHhhHHHHHHHHHHHHhhcccceEEeccccccccCCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhh
Confidence 11111 122355677888889888865421 1222211 000 0 001100
Q ss_pred cccccc--chhhh---hcCCCCcceEEEeccCCCccCCCC----------------------hhH--HHHHHHHHHHHHH
Q 014373 254 YATQVG--TDFIR---NHQTLGVDFASVHIYADSWISQTI----------------------SDA--HLQFTKSWMEAHI 304 (426)
Q Consensus 254 y~~~~g--~d~~~---~~~~~~iD~~s~H~Y~~~w~~~~~----------------------~~~--~~~~~~~~l~~~~ 304 (426)
+....| ..|.. ......+||+++++|......... ..+ ..+..+..|+..+
T Consensus 267 ~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P~Gl~~~L 346 (455)
T PF00232_consen 267 YLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRADPNPSSPPSYDSDAPFGQPYNPGGPTTDWGWEIYPEGLRDVL 346 (455)
T ss_dssp HHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEESSSSTSSTTHEEEESEEEECETSSEBCTTSTBBETHHHHHHH
T ss_pred ccccccccccccchhhhcccccchhhhhccccceeeccCccccccccccCCccccccccccccccccCcccccchHhhhh
Confidence 000000 00100 111357899999999543211000 000 0111244455555
Q ss_pred HHHHHhCC-CcEEEEecCCCCCCC----CCChHHHHHHHHHHHHHHHhhhhcCCCcccccccccCCCCCCCCCC----Cc
Q 014373 305 EDAEKYLR-MPVLFTEFGVSAKDT----GYNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGTDYMND----GY 375 (426)
Q Consensus 305 ~~a~~~~~-kPv~v~EfG~~~~~~----~~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~~~~~d----g~ 375 (426)
....++++ +||+|+|+|++..+. ...+..|..|++.++.++.+++++|.++.|+++|++.|+ .+|.+ .|
T Consensus 347 ~~l~~~Y~~~pI~ITENG~~~~~~~~~~~v~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn--~Ew~~Gy~~rf 424 (455)
T PF00232_consen 347 RYLKDRYGNPPIYITENGIGDPDEVDDGKVDDDYRIDYLQDHLNQVLKAIEDGVNVRGYFAWSLLDN--FEWAEGYKKRF 424 (455)
T ss_dssp HHHHHHHTSSEEEEEEE---EETTCTTSHBSHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEETSB-----BGGGGGGSE-
T ss_pred hhhccccCCCcEEEecccccccccccccCcCcHHHHHHHHHHHHHHHhhhccCCCeeeEeeeccccc--cccccCccCcc
Confidence 55544455 999999999987642 134789999999999999999999999999999999999 67754 57
Q ss_pred eEEeCC-CccHHHHHHHHHHHHhhc
Q 014373 376 AIVLSK-SPSTSNIISLHSTRIATF 399 (426)
Q Consensus 376 ~i~~~~-~~~~~~~~~~~~~~~~~~ 399 (426)
|+++.| .++..|++|.++.-.+.+
T Consensus 425 Gl~~VD~~~~~~R~pK~S~~~y~~~ 449 (455)
T PF00232_consen 425 GLVYVDFFDTLKRTPKKSAYWYKDF 449 (455)
T ss_dssp -SEEEETTTTTEEEEBHHHHHHHHH
T ss_pred CceEEcCCCCcCeeeccHHHHHHHH
Confidence 777777 777888888887766654
No 19
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.86 E-value=2.4e-20 Score=187.04 Aligned_cols=286 Identities=19% Similarity=0.253 Sum_probs=156.8
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhHH
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYV 140 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~ 140 (426)
.++.+++||+.|+++|+|+|||..|+ |..+||++|+|| |..||++|+.|+++||+|||.+... .. +
T Consensus 8 ~~e~~~~d~~~m~~~G~n~vri~~~~---W~~lEP~eG~yd---F~~lD~~l~~a~~~Gi~viL~~~~~-----~~---P 73 (374)
T PF02449_consen 8 PEEEWEEDLRLMKEAGFNTVRIGEFS---WSWLEPEEGQYD---FSWLDRVLDLAAKHGIKVILGTPTA-----AP---P 73 (374)
T ss_dssp -CCHHHHHHHHHHHHT-SEEEE-CCE---HHHH-SBTTB------HHHHHHHHHHHCTT-EEEEEECTT-----TS----
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEec---hhhccCCCCeee---cHHHHHHHHHHHhccCeEEEEeccc-----cc---c
Confidence 46899999999999999999996553 888999999998 8889999999999999999987432 11 2
Q ss_pred Hhhhh----------cCCCC---CCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCCCCCC
Q 014373 141 KWGKA----------AGLNL---TSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPS 207 (426)
Q Consensus 141 ~W~~~----------~g~~~---~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~~~ 207 (426)
.|... .|... ......+.+|..++.++++++.+++| |+++|+|++|+|.|||.+..+.+
T Consensus 74 ~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~--------y~~~p~vi~~~i~NE~~~~~~~~ 145 (374)
T PF02449_consen 74 AWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAER--------YGDHPAVIGWQIDNEPGYHRCYS 145 (374)
T ss_dssp HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHH--------HTTTTTEEEEEECCSTTCTS--S
T ss_pred cchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhh--------ccccceEEEEEeccccCcCcCCC
Confidence 35321 11100 01122366789999999999999999 99999999999999997732100
Q ss_pred --------------------------------------------------------------hhHHHHHHHHHHHHHHhc
Q 014373 208 --------------------------------------------------------------GDTLQSWIQEMAVYVKSI 225 (426)
Q Consensus 208 --------------------------------------------------------------~~~~~~w~~~~~~~Ir~~ 225 (426)
.+.+.+++..+++.||+.
T Consensus 146 ~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir~~ 225 (374)
T PF02449_consen 146 PACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIREY 225 (374)
T ss_dssp HHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 023445666778999999
Q ss_pred CCCCEEEeccccccCCCCCCCccCCCCcccccccchhhhhcCCCCcceEEEeccCCCc-cCCCChhHHHHHHHHHHHHHH
Q 014373 226 DAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDFASVHIYADSW-ISQTISDAHLQFTKSWMEAHI 304 (426)
Q Consensus 226 dp~~lV~~g~~g~~~~~~~~~~~~np~~y~~~~g~d~~~~~~~~~iD~~s~H~Y~~~w-~~~~~~~~~~~~~~~~l~~~~ 304 (426)
+|+++|++...+... .+.|... ....+|+++++.||... ............... ..
T Consensus 226 ~p~~~vt~n~~~~~~-----------------~~~d~~~--~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~d----l~ 282 (374)
T PF02449_consen 226 DPDHPVTTNFMGSWF-----------------NGIDYFK--WAKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHD----LM 282 (374)
T ss_dssp STT-EEE-EE-TT--------------------SS-HHH--HGGGSSSEEEEE-HHHHHTTTT--TTHHHHHHH----HH
T ss_pred CCCceEEeCcccccc-----------------CcCCHHH--HHhhCCcceeccccCcccCCCCCCHHHHHHHHH----HH
Confidence 999999875432100 1122222 24578999999998710 001110111112222 22
Q ss_pred HHHHHhCCCcEEEEecCCCCCCC-CCChHHHHHHHHHHHHHHHhhhhcCCCcccccccccCCCCCCCCCCCceEEeCCC-
Q 014373 305 EDAEKYLRMPVLFTEFGVSAKDT-GYNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGTDYMNDGYAIVLSKS- 382 (426)
Q Consensus 305 ~~a~~~~~kPv~v~EfG~~~~~~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~~~~~dg~~i~~~~~- 382 (426)
+.. + .+||++|.|.-.....- ......+...++.. .+.++..| ..|.++|+|.......-.-.++|+..++
T Consensus 283 R~~-~-~~kpf~v~E~~~g~~~~~~~~~~~~pg~~~~~---~~~~~A~G--a~~i~~~~wr~~~~g~E~~~~g~~~~dg~ 355 (374)
T PF02449_consen 283 RSL-A-KGKPFWVMEQQPGPVNWRPYNRPPRPGELRLW---SWQAIAHG--ADGILFWQWRQSRFGAEQFHGGLVDHDGR 355 (374)
T ss_dssp HHH-T-TT--EEEEEE--S--SSSSS-----TTHHHHH---HHHHHHTT---S-EEEC-SB--SSSTTTTS--SB-TTS-
T ss_pred Hhh-c-CCCceEeecCCCCCCCCccCCCCCCCCHHHHH---HHHHHHHh--CCeeEeeeccCCCCCchhhhcccCCccCC
Confidence 212 2 69999999995442210 01111222223322 22333334 6789999997653221122477777666
Q ss_pred cc--HHHHHHHHHHHHhh
Q 014373 383 PS--TSNIISLHSTRIAT 398 (426)
Q Consensus 383 ~~--~~~~~~~~~~~~~~ 398 (426)
.. +.+=+++.++.+++
T Consensus 356 ~~~~~~~e~~~~~~~l~~ 373 (374)
T PF02449_consen 356 EPTRRYREVAQLGRELKK 373 (374)
T ss_dssp -B-HHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHhc
Confidence 32 23334555555554
No 20
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=99.71 E-value=1.5e-16 Score=170.23 Aligned_cols=172 Identities=17% Similarity=0.221 Sum_probs=133.3
Q ss_pred cccCccchhcccccccCC----------CCCc--EEEeCCeEEECCeEEEEEEeeccchhhhccCCCChHHHHHHHHHHH
Q 014373 6 REFPSLQRIYDLQVREDD----------DWQM--VQKQGNQFVVNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQAS 73 (426)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~----------~~~f--v~~~g~~f~~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~ 73 (426)
.=+|+.|.||+|.+.... ..|| |++..+.|.+||||++++|+|.|.....-......+.+++||+.||
T Consensus 252 lWsp~~P~LY~l~~~L~~~~~~~d~~~~~iGfR~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk 331 (808)
T COG3250 252 LWSPEDPYLYRLVVTLKDANTLIDAEALRIGFRTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMK 331 (808)
T ss_pred cCCCCCCceEEEEEEEEeCCceeeEEEeeeccEEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHH
Confidence 347999999997765422 4788 7778889999999999999998754332222335667999999999
Q ss_pred HCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhHHHhhhhcCCCCCCC
Q 014373 74 SAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSD 153 (426)
Q Consensus 74 ~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~g~~~~~~ 153 (426)
++|+|+||+|++.. + ..++++|.++||.||-+....| .+.
T Consensus 332 ~~n~N~vRtsHyP~-------------~-------~~~ydLcDelGllV~~Ea~~~~---------------~~~----- 371 (808)
T COG3250 332 EANMNSVRTSHYPN-------------S-------EEFYDLCDELGLLVIDEAMIET---------------HGM----- 371 (808)
T ss_pred HcCCCEEEecCCCC-------------C-------HHHHHHHHHhCcEEEEecchhh---------------cCC-----
Confidence 99999999985421 1 2688999999999988863321 111
Q ss_pred CCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCEEEe
Q 014373 154 DEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEI 233 (426)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~ 233 (426)
..+++..+.....++.+|+| .||||+|+.|.++||...... ...+...+|+.||+++|..
T Consensus 372 ---~~~~~~~k~~~~~i~~mver--------~knHPSIiiWs~gNE~~~g~~---------~~~~~~~~k~~d~~r~~~~ 431 (808)
T COG3250 372 ---PDDPEWRKEVSEEVRRMVER--------DRNHPSIIIWSLGNESGHGSN---------HWALYRWFKASDPTRPVQY 431 (808)
T ss_pred ---CCCcchhHHHHHHHHHHHHh--------ccCCCcEEEEeccccccCccc---------cHHHHHHHhhcCCccceec
Confidence 25678888999999999999 999999999999999976431 2457778899999999987
Q ss_pred cccc
Q 014373 234 GLEG 237 (426)
Q Consensus 234 g~~g 237 (426)
+...
T Consensus 432 ~~~~ 435 (808)
T COG3250 432 EGRG 435 (808)
T ss_pred cCcc
Confidence 7544
No 21
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=99.67 E-value=3.5e-15 Score=141.23 Aligned_cols=276 Identities=16% Similarity=0.271 Sum_probs=133.6
Q ss_pred CCCCCcEEEeCCeEE--ECCeEEEEEEeeccchhhh--c--cCC-CChHHHHHHHHHHHHCCCCEEEeccccCCCccccc
Q 014373 22 DDDWQMVQKQGNQFV--VNDQPFYVNGFNTYWLMVF--A--ADQ-STRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQ 94 (426)
Q Consensus 22 ~~~~~fv~~~g~~f~--~~G~~~~~~G~N~~~~~~~--~--~~~-~~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~ 94 (426)
.+...-|+++|++|. .+|+.|+++|+.|.-.... . .+| .+.+...+|+..|+++|+|+||+......
T Consensus 5 ~~~~~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~------ 78 (314)
T PF03198_consen 5 AAAVPPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPS------ 78 (314)
T ss_dssp STTS--EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TT------
T ss_pred hccCCCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCC------
Confidence 445667999999998 7999999999997432221 0 133 25678999999999999999999764211
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhHHHhhhhcCCCCCCCCCcCCCH--HHHHHHHHHHHH
Q 014373 95 TSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHT--TLKSYYKAHVKT 172 (426)
Q Consensus 95 ~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~ 172 (426)
..-|.++.+..+.|||||++|... .+..+. .+| ..-..+.+....
T Consensus 79 -----------~nHd~CM~~~~~aGIYvi~Dl~~p---~~sI~r-------------------~~P~~sw~~~l~~~~~~ 125 (314)
T PF03198_consen 79 -----------KNHDECMSAFADAGIYVILDLNTP---NGSINR-------------------SDPAPSWNTDLLDRYFA 125 (314)
T ss_dssp -----------S--HHHHHHHHHTT-EEEEES-BT---TBS--T-------------------TS------HHHHHHHHH
T ss_pred -----------CCHHHHHHHHHhCCCEEEEecCCC---CccccC-------------------CCCcCCCCHHHHHHHHH
Confidence 023688899999999999999543 111111 112 233344555556
Q ss_pred HHhcccccccccccCCCcEEEEEeccCCCCCCCCC--hhHHHHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCCccCC
Q 014373 173 VLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPS--GDTLQSWIQEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFN 250 (426)
Q Consensus 173 iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~~~--~~~~~~w~~~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~n 250 (426)
++.- ++..|.++++-.+||........ ..-+++.++.|.++|++... +.|.+|-.. .+..+.. .
T Consensus 126 vid~--------fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~-R~IPVGYsa---aD~~~~r--~ 191 (314)
T PF03198_consen 126 VIDA--------FAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGY-RSIPVGYSA---ADDAEIR--Q 191 (314)
T ss_dssp HHHH--------HTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEEE------TTTH--H
T ss_pred HHHH--------hccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCC-CCCceeEEc---cCChhHH--H
Confidence 6666 78888999999999986543221 23477788899999998654 445555211 1111000 0
Q ss_pred C-CcccccccchhhhhcCCCCcceEEEeccCCCccCCCChhHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCCCC
Q 014373 251 P-NSYATQVGTDFIRNHQTLGVDFASVHIYADSWISQTISDAHLQFTKSWMEAHIEDAEKYLRMPVLFTEFGVSAKDTGY 329 (426)
Q Consensus 251 p-~~y~~~~g~d~~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~l~~~~~~a~~~~~kPv~v~EfG~~~~~~~~ 329 (426)
+ ..| ... ......+||++++.|. |-..++++. .-...+.+.... +..|++++|||.....+.
T Consensus 192 ~~a~Y--l~C-----g~~~~~iDf~g~N~Y~--WCg~Stf~~------SGy~~l~~~f~~-y~vPvffSEyGCn~~~pR- 254 (314)
T PF03198_consen 192 DLANY--LNC-----GDDDERIDFFGLNSYE--WCGDSTFET------SGYDRLTKEFSN-YSVPVFFSEYGCNTVTPR- 254 (314)
T ss_dssp HHHHH--TTB-----TT-----S-EEEEE------SS--HHH------HSHHHHHHHHTT--SS-EEEEEE---SSSS--
T ss_pred HHHHH--hcC-----CCcccccceeeeccce--ecCCCcccc------ccHHHHHHHhhC-CCCCeEEcccCCCCCCCc-
Confidence 0 001 000 0112489999999994 754443321 112233444555 799999999999765432
Q ss_pred ChHHHHHHHHHHHHHHHhhhhcCCCcccccccccCCCCCCCCCCCceEEeCC
Q 014373 330 NTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGTDYMNDGYAIVLSK 381 (426)
Q Consensus 330 ~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~~~~~dg~~i~~~~ 381 (426)
-+..+ .+++..--. ....|.+.-.|..+. .+||++--+
T Consensus 255 -------~f~ev-~aly~~~Mt-~v~SGGivYEy~~e~-----n~yGlV~~~ 292 (314)
T PF03198_consen 255 -------TFTEV-PALYSPEMT-DVWSGGIVYEYFQEA-----NNYGLVEIS 292 (314)
T ss_dssp ---------THH-HHHTSHHHH-TTEEEEEES-SB--S-----SS--SEEE-
T ss_pred -------cchHh-HHhhCccch-hheeceEEEEEeccC-----CceEEEEEc
Confidence 11121 223321112 237888888887652 357766643
No 22
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=99.66 E-value=1.6e-14 Score=144.82 Aligned_cols=308 Identities=14% Similarity=0.198 Sum_probs=193.2
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCC-C--CCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhh
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTS-P--SVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQ 138 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~-~--g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~ 138 (426)
..++.+|+++|+++|+++.|+-+ .|+++-|. + +.+|+++++.+..+|++..++||.++++|. +|+. ||
T Consensus 90 Yh~ykeDv~Lmk~lgv~afRFSI----sWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLf-HwDl----Pq 160 (524)
T KOG0626|consen 90 YHRYKEDVKLMKELGVDAFRFSI----SWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLF-HWDL----PQ 160 (524)
T ss_pred hhhhHHHHHHHHHcCCCeEEEEe----ehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEe-cCCC----CH
Confidence 56899999999999999999854 38877664 2 458999999999999999999999999996 4643 44
Q ss_pred HHHhhhh-cCCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCCCC------------
Q 014373 139 YVKWGKA-AGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSD------------ 205 (426)
Q Consensus 139 y~~W~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~------------ 205 (426)
+..+ .|+ |-++++++.|++|.+...++ |+| .|-.|...|||.....
T Consensus 161 ---~LeDeYgG--------wLn~~ivedF~~yA~~CF~~--------fGD--rVK~WiT~NEP~v~s~~gY~~G~~aPGr 219 (524)
T KOG0626|consen 161 ---ALEDEYGG--------WLNPEIVEDFRDYADLCFQE--------FGD--RVKHWITFNEPNVFSIGGYDTGTKAPGR 219 (524)
T ss_pred ---HHHHHhcc--------ccCHHHHHHHHHHHHHHHHH--------hcc--cceeeEEecccceeeeehhccCCCCCCC
Confidence 3222 233 77899999999999999999 999 6889999999984321
Q ss_pred C-----------Ch-hH--HHHH----HHHHHHHHHhc-C--CCCEEEecccc-ccCCCC--CCCc-cCC-----CCcc-
Q 014373 206 P-----------SG-DT--LQSW----IQEMAVYVKSI-D--AKHLVEIGLEG-FYGPSA--PDRA-KFN-----PNSY- 254 (426)
Q Consensus 206 ~-----------~~-~~--~~~w----~~~~~~~Ir~~-d--p~~lV~~g~~g-~~~~~~--~~~~-~~n-----p~~y- 254 (426)
| ++ +. +..+ ..++....|+- . -+-.|.+.... |+-+.. .+.. ..+ ...|
T Consensus 220 Cs~~~~~c~~g~s~~epYiv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi~~~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~ 299 (524)
T KOG0626|consen 220 CSKYVGNCSAGNSGTEPYIVAHNLLLAHAAAVDLYRKKYKKKQGGKIGIALSARWFEPYDDSKEDKEAAERALDFFLGWF 299 (524)
T ss_pred CCcccccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcCCeEeEEEeeeeeccCCCChHHHHHHHHHHHhhhhhh
Confidence 1 01 11 1111 11222233322 1 12244433211 211111 1100 000 0001
Q ss_pred cc-cccchhh---------------h---hcCCCCcceEEEeccCCCccCC----C-------Ch---------------
Q 014373 255 AT-QVGTDFI---------------R---NHQTLGVDFASVHIYADSWISQ----T-------IS--------------- 289 (426)
Q Consensus 255 ~~-~~g~d~~---------------~---~~~~~~iD~~s~H~Y~~~w~~~----~-------~~--------------- 289 (426)
.. ....|+. . .......||++++.|....... . ..
T Consensus 300 l~p~~~GdYP~~Mk~~vg~rLP~FT~ee~~~lKGS~DFvGiNyYts~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 379 (524)
T KOG0626|consen 300 LEPLTFGDYPDEMKERVGSRLPKFTEEESKLLKGSYDFVGINYYTSRYVKHLKPPPDPSQPGWSTDSGVDWTLEGNDLIG 379 (524)
T ss_pred hcccccCCcHHHHHHHhcccCCCCCHHHHHHhcCchhhceeehhhhhhhhccCCCCCCCCcccccccceeeeeccccccc
Confidence 00 0011111 0 1113467999999995422110 0 00
Q ss_pred ----hHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCCCCC-------CChHHHHHHHHHHHHHHHhhhh-cCCCcc
Q 014373 290 ----DAHLQFTKSWMEAHIEDAEKY-LRMPVLFTEFGVSAKDTG-------YNTSFRDTLISSVYKTLLNSTK-KGGSGA 356 (426)
Q Consensus 290 ----~~~~~~~~~~l~~~~~~a~~~-~~kPv~v~EfG~~~~~~~-------~~~~~r~~~~~~~~~~~~~~~~-~~~~~~ 356 (426)
...+...+.-++..++.++.+ .+.|++|+|.|......+ ..+..|..|++..+.++.++++ .+..+.
T Consensus 380 ~~~~~~~~~v~P~Glr~~L~yiK~~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~dgvnv~ 459 (524)
T KOG0626|consen 380 PKAGSDWLPVYPWGLRKLLNYIKDKYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKEDGVNVK 459 (524)
T ss_pred ccccccceeeccHHHHHHHHHHHhhcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHhcCCcee
Confidence 001112233456666666654 468899999999886421 3578899999999999999997 678899
Q ss_pred cccccccCCCCCCCCCC----CceEEeCCCc-cHHHHHHHHHHHHhhccc
Q 014373 357 GSLLWQLFPDGTDYMND----GYAIVLSKSP-STSNIISLHSTRIATFNS 401 (426)
Q Consensus 357 G~~~W~~~~~g~~~~~d----g~~i~~~~~~-~~~~~~~~~~~~~~~~~~ 401 (426)
|++.|++.|+ .+|.+ +||+++.|-. ...|..|.+++=.+.+-.
T Consensus 460 GYf~WSLmDn--fEw~~Gy~~RFGlyyVDf~d~l~R~pK~Sa~wy~~fl~ 507 (524)
T KOG0626|consen 460 GYFVWSLLDN--FEWLDGYKVRFGLYYVDFKDPLKRYPKLSAKWYKKFLK 507 (524)
T ss_pred eEEEeEcccc--hhhhcCcccccccEEEeCCCCCcCCchhHHHHHHHHHc
Confidence 9999999999 77766 4556665422 267788888777665543
No 23
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.58 E-value=1e-13 Score=134.72 Aligned_cols=239 Identities=19% Similarity=0.240 Sum_probs=139.4
Q ss_pred HHHHHHHHHHCCCCEEEeccccCCCcccccCC-CCCCChHHHHHHHHHHHHHHHcCCEEEEecCC--CcCCCCChhhHHH
Q 014373 65 VSELFHQASSAGLTVCRTWAFNDGQWRALQTS-PSVYDEEVFKALDFVISEAKKYKIRLILSLTN--NWDAYGGKAQYVK 141 (426)
Q Consensus 65 ~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~-~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~--~w~~~gg~~~y~~ 141 (426)
.++-|+.||+.|+|.||+=++.+ |. .|..+ ++..-.+...|+++||+|+|++|. .|.+-|....=..
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~-------P~~~g~~~---~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~a 95 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVN-------PYDGGYND---LEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAA 95 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS--------TTTTTTS---HHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TT
T ss_pred CCCHHHHHHhcCCCeEEEEeccC-------CcccccCC---HHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCcc
Confidence 45789999999999999954432 22 24444 666677888899999999999984 4544332110001
Q ss_pred hhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCC-CcEEEEEeccCCCCCCCC------ChhHHHHH
Q 014373 142 WGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKND-PTIFAWELMNEPRCTSDP------SGDTLQSW 214 (426)
Q Consensus 142 W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~-p~I~~weL~NEp~~~~~~------~~~~~~~w 214 (426)
|. . .+-.++.++..+|.+.+++. +++. -.+-.++++||.+..... .-+.+.+.
T Consensus 96 W~-----------~-~~~~~l~~~v~~yT~~vl~~--------l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~l 155 (332)
T PF07745_consen 96 WA-----------N-LSFDQLAKAVYDYTKDVLQA--------LKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKL 155 (332)
T ss_dssp CT-----------S-SSHHHHHHHHHHHHHHHHHH--------HHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHH
T ss_pred CC-----------C-CCHHHHHHHHHHHHHHHHHH--------HHHCCCCccEEEeCccccccccCcCCCccCHHHHHHH
Confidence 21 0 12367888888999999988 6655 234568999998865432 12567788
Q ss_pred HHHHHHHHHhcCCCCEEEeccccccCCCCCCCccCCCCcccccccchhhhh--cCCCCcceEEEeccCCCccCCCChhHH
Q 014373 215 IQEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRN--HQTLGVDFASVHIYADSWISQTISDAH 292 (426)
Q Consensus 215 ~~~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~np~~y~~~~g~d~~~~--~~~~~iD~~s~H~Y~~~w~~~~~~~~~ 292 (426)
++..+++||+.+|+..|.+..+.-... . . + ..|... ...-..|++++++||. |.. +
T Consensus 156 l~ag~~AVr~~~p~~kV~lH~~~~~~~--~------~--~-----~~~f~~l~~~g~d~DviGlSyYP~-w~~--~---- 213 (332)
T PF07745_consen 156 LNAGIKAVREVDPNIKVMLHLANGGDN--D------L--Y-----RWFFDNLKAAGVDFDVIGLSYYPF-WHG--T---- 213 (332)
T ss_dssp HHHHHHHHHTHSSTSEEEEEES-TTSH--H------H--H-----HHHHHHHHHTTGG-SEEEEEE-ST-TST-------
T ss_pred HHHHHHHHHhcCCCCcEEEEECCCCch--H------H--H-----HHHHHHHHhcCCCcceEEEecCCC-Ccc--h----
Confidence 889999999999999998875321000 0 0 0 001111 1234568999999997 532 1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCC----------------CC--CChHHHHHHHHHHHHHHHhhhhcCCC
Q 014373 293 LQFTKSWMEAHIEDAEKYLRMPVLFTEFGVSAKD----------------TG--YNTSFRDTLISSVYKTLLNSTKKGGS 354 (426)
Q Consensus 293 ~~~~~~~l~~~~~~a~~~~~kPv~v~EfG~~~~~----------------~~--~~~~~r~~~~~~~~~~~~~~~~~~~~ 354 (426)
+..+..-+. ..+.+ ++|||+|.|+|.+... .+ .+.+-|..|++.+.+.+.+ .-. +.
T Consensus 214 l~~l~~~l~---~l~~r-y~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~-~p~-~~ 287 (332)
T PF07745_consen 214 LEDLKNNLN---DLASR-YGKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKN-VPN-GG 287 (332)
T ss_dssp HHHHHHHHH---HHHHH-HT-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHT-S---TT
T ss_pred HHHHHHHHH---HHHHH-hCCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHH-hcc-CC
Confidence 222222222 12334 7999999999987651 01 1467788999888776543 211 34
Q ss_pred ccccccc
Q 014373 355 GAGSLLW 361 (426)
Q Consensus 355 ~~G~~~W 361 (426)
+.|.+||
T Consensus 288 g~GvfYW 294 (332)
T PF07745_consen 288 GLGVFYW 294 (332)
T ss_dssp EEEEEEE
T ss_pred eEEEEee
Confidence 8999999
No 24
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=99.55 E-value=2e-13 Score=133.41 Aligned_cols=168 Identities=15% Similarity=0.277 Sum_probs=113.1
Q ss_pred eEEECCeEEEEEEeeccchhhhccCCCChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHH
Q 014373 34 QFVVNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVIS 113 (426)
Q Consensus 34 ~f~~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~ 113 (426)
+|++||||+++.+..+|+...- ++.|++.|+.||++|+|+|-+.++ |..+++.+|+||-+....|+++|+
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p------~~~W~~~l~k~ka~G~n~v~~yv~----W~~he~~~g~~df~g~~dl~~f~~ 70 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIP------PEYWRDRLQKMKAAGLNTVSTYVP----WNLHEPEEGQFDFTGNRDLDRFLD 70 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-------GGGHHHHHHHHHHTT-SEEEEE------HHHHSSBTTB---SGGG-HHHHHH
T ss_pred CeEECCEEEEEEEeeeccccCC------hhHHHHHHHHHHhCCcceEEEecc----ccccCCCCCcccccchhhHHHHHH
Confidence 5899999999999998876432 589999999999999999999876 777899999999888889999999
Q ss_pred HHHHcCCEEEEec----CCCcCCCCChhhHHHhhhhc-CCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCC
Q 014373 114 EAKKYKIRLILSL----TNNWDAYGGKAQYVKWGKAA-GLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKND 188 (426)
Q Consensus 114 ~a~~~Gi~vil~l----~~~w~~~gg~~~y~~W~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~ 188 (426)
.|+++||+||+-+ +.-| .+||.| .|.... +... --+|+...+..+++++.|++.+-+ ..+.+.
T Consensus 71 ~a~~~gl~vilrpGpyi~aE~-~~gG~P---~Wl~~~~~~~~-----R~~~~~~~~~~~~~~~~~~~~~~~---~~~~~G 138 (319)
T PF01301_consen 71 LAQENGLYVILRPGPYICAEW-DNGGLP---AWLLRKPDIRL-----RTNDPPFLEAVERWYRALAKIIKP---LQYTNG 138 (319)
T ss_dssp HHHHTT-EEEEEEES---TTB-GGGG-----GGGGGSTTS-S-----SSS-HHHHHHHHHHHHHHHHHHGG---GBGGGT
T ss_pred HHHHcCcEEEecccceecccc-cchhhh---hhhhccccccc-----cccchhHHHHHHHHHHHHHHHHHh---hhhcCC
Confidence 9999999999985 3333 346765 475432 2111 124677888888888887776443 346666
Q ss_pred CcEEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 014373 189 PTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAK 228 (426)
Q Consensus 189 p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~ 228 (426)
..|++.++.||..... .-.+.++.+.+..++.-+.
T Consensus 139 GpII~vQvENEyg~~~-----~~~~Y~~~l~~~~~~~g~~ 173 (319)
T PF01301_consen 139 GPIIMVQVENEYGSYG-----TDRAYMEALKDAYRDWGID 173 (319)
T ss_dssp SSEEEEEESSSGGCTS-----S-HHHHHHHHHHHHHTT-S
T ss_pred CceehhhhhhhhCCCc-----ccHhHHHHHHHHHHHhhCc
Confidence 7799999999998322 2344555566666654444
No 25
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=99.51 E-value=2.7e-12 Score=121.94 Aligned_cols=221 Identities=21% Similarity=0.359 Sum_probs=141.9
Q ss_pred cccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhHHHhhhhcCCCCCCCCCcCCCHHHHHHHHHH
Q 014373 90 WRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAH 169 (426)
Q Consensus 90 ~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~g~~~~~~~~~~~~~~~~~~~~~~ 169 (426)
|..++|++|.+| ++.+|++++.|+++||++---.. -|.. +.+.|... ...++.++.+.+|
T Consensus 3 W~~~ep~~G~~n---~~~~D~~~~~a~~~gi~v~gH~l-~W~~-----~~P~W~~~-----------~~~~~~~~~~~~~ 62 (254)
T smart00633 3 WDSTEPSRGQFN---FSGADAIVNFAKENGIKVRGHTL-VWHS-----QTPDWVFN-----------LSKETLLARLENH 62 (254)
T ss_pred cccccCCCCccC---hHHHHHHHHHHHHCCCEEEEEEE-eecc-----cCCHhhhc-----------CCHHHHHHHHHHH
Confidence 667899999998 88899999999999999833211 1422 22356532 1145788999999
Q ss_pred HHHHHhcccccccccccCCCcEEEEEeccCCCCCCCC----Ch--hH-HHHHHHHHHHHHHhcCCCCEEEeccccccCCC
Q 014373 170 VKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDP----SG--DT-LQSWIQEMAVYVKSIDAKHLVEIGLEGFYGPS 242 (426)
Q Consensus 170 ~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~~----~~--~~-~~~w~~~~~~~Ir~~dp~~lV~~g~~g~~~~~ 242 (426)
++.+++| |++ .|..|++.|||...... +. +. -..|+....+.+|+.||+..+.+.. |+..
T Consensus 63 i~~v~~r--------y~g--~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Nd---y~~~ 129 (254)
T smart00633 63 IKTVVGR--------YKG--KIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYND---YNTE 129 (254)
T ss_pred HHHHHHH--------hCC--cceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEec---cCCc
Confidence 9999999 987 48889999999864310 00 00 1268889999999999998887753 2211
Q ss_pred CCCCccCCCCcccccccchhhhhc--CCCCcceEEE--eccCCCccCCCChhHHHHHHHHHHHHHHHHHHHhCCCcEEEE
Q 014373 243 APDRAKFNPNSYATQVGTDFIRNH--QTLGVDFASV--HIYADSWISQTISDAHLQFTKSWMEAHIEDAEKYLRMPVLFT 318 (426)
Q Consensus 243 ~~~~~~~np~~y~~~~g~d~~~~~--~~~~iD~~s~--H~Y~~~w~~~~~~~~~~~~~~~~l~~~~~~a~~~~~kPv~v~ 318 (426)
.+... ...+ ..++..+ ..-.||-+++ |.+... .+ . ..+.+.++...+ .|+||+|+
T Consensus 130 ~~~~k---~~~~-----~~~v~~l~~~g~~iDgiGlQ~H~~~~~----~~----~----~~~~~~l~~~~~-~g~pi~iT 188 (254)
T smart00633 130 EPNAK---RQAI-----YELVKKLKAKGVPIDGIGLQSHLSLGS----PN----I----AEIRAALDRFAS-LGLEIQIT 188 (254)
T ss_pred CccHH---HHHH-----HHHHHHHHHCCCccceeeeeeeecCCC----CC----H----HHHHHHHHHHHH-cCCceEEE
Confidence 10000 0001 1122111 1224787777 443211 11 1 124444444555 79999999
Q ss_pred ecCCCCCCCCCChHHHHHHHHHHHHHHHhhhhcCCCcccccccccCCCCCCCCCC
Q 014373 319 EFGVSAKDTGYNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGTDYMND 373 (426)
Q Consensus 319 EfG~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~~~~~d 373 (426)
|+++.... +.+.|.++++.++..+++. +.+.|.++|.+.+. ..|..
T Consensus 189 E~dv~~~~---~~~~qA~~~~~~l~~~~~~----p~v~gi~~Wg~~d~--~~W~~ 234 (254)
T smart00633 189 ELDISGYP---NPQAQAADYEEVFKACLAH----PAVTGVTVWGVTDK--YSWLD 234 (254)
T ss_pred EeecCCCC---cHHHHHHHHHHHHHHHHcC----CCeeEEEEeCCccC--CcccC
Confidence 99998753 2367888888888777653 35789999999876 44533
No 26
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=99.48 E-value=1.6e-12 Score=125.56 Aligned_cols=167 Identities=22% Similarity=0.342 Sum_probs=100.4
Q ss_pred CCeEE-ECCeEEEEEEeeccchhhhccCCCChHHHHHHHHHHHHCCCCEEEeccccCC-Cc------c--cc-cCCCC--
Q 014373 32 GNQFV-VNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDG-QW------R--AL-QTSPS-- 98 (426)
Q Consensus 32 g~~f~-~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~N~vRi~~~~~~-~~------~--~~-~~~~g-- 98 (426)
+.+|+ .||+||++.|...|-+.... +.++++..|+..++.|+|+||+-++... .. + .+ ...++
T Consensus 2 ~r~f~~~dG~Pff~lgdT~W~~~~~~----~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~ 77 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLGDTAWSLFHRL----TREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQF 77 (289)
T ss_dssp SSSEEETTS-B--EEEEE-TTHHHH------HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT----
T ss_pred CceEecCCCCEEeehhHHHHHHhhCC----CHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCcccc
Confidence 45787 79999999997765332221 3578999999999999999999665421 01 1 11 11122
Q ss_pred ---CCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhH--HHhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHH
Q 014373 99 ---VYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQY--VKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTV 173 (426)
Q Consensus 99 ---~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y--~~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i 173 (426)
.+|++.|+.+|++|+.|.++||.+.|.+. |.. .| ..|.. | ...+ ..+..+.|++.|
T Consensus 78 d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~--wg~-----~~~~~~Wg~--~------~~~m----~~e~~~~Y~~yv 138 (289)
T PF13204_consen 78 DFTRPNPAYFDHLDRRIEKANELGIEAALVPF--WGC-----PYVPGTWGF--G------PNIM----PPENAERYGRYV 138 (289)
T ss_dssp --TT----HHHHHHHHHHHHHHTT-EEEEESS---HH-----HHH---------------TTSS-----HHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEE--ECC-----ccccccccc--c------ccCC----CHHHHHHHHHHH
Confidence 37899999999999999999999976653 311 12 12421 0 0111 245678999999
Q ss_pred HhcccccccccccCCCcEEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCEEEecc
Q 014373 174 LNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIGL 235 (426)
Q Consensus 174 v~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~g~ 235 (426)
++| |+.-|+|+ |.|+||- ... ....+..++|++.||+.||.+|+|+..
T Consensus 139 ~~R--------y~~~~Nvi-W~l~gd~-~~~----~~~~~~w~~~~~~i~~~dp~~L~T~H~ 186 (289)
T PF13204_consen 139 VAR--------YGAYPNVI-WILGGDY-FDT----EKTRADWDAMARGIKENDPYQLITIHP 186 (289)
T ss_dssp HHH--------HTT-SSEE-EEEESSS---T----TSSHHHHHHHHHHHHHH--SS-EEEEE
T ss_pred HHH--------HhcCCCCE-EEecCcc-CCC----CcCHHHHHHHHHHHHhhCCCCcEEEeC
Confidence 999 99999988 9999999 211 223445589999999999999998864
No 27
>PLN03059 beta-galactosidase; Provisional
Probab=99.45 E-value=3.3e-12 Score=135.57 Aligned_cols=181 Identities=19% Similarity=0.294 Sum_probs=136.5
Q ss_pred cEEEeCCeEEECCeEEEEEEeeccchhhhccCCCChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHH
Q 014373 27 MVQKQGNQFVVNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFK 106 (426)
Q Consensus 27 fv~~~g~~f~~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~ 106 (426)
-|+.++..|.+||+|+.+.+..+||... .++.|++.|+.||++|+|+|=++++ |..+||.||+||-+...
T Consensus 29 ~v~~d~~~f~idG~p~~i~sG~iHY~R~------~p~~W~d~L~k~Ka~GlNtV~tYV~----Wn~HEp~~G~~dF~G~~ 98 (840)
T PLN03059 29 SVSYDHRAFIINGQRRILISGSIHYPRS------TPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEPSPGNYYFEDRY 98 (840)
T ss_pred EEEEeCCEEEECCEEEEEEEeCcccCcC------CHHHHHHHHHHHHHcCCCeEEEEec----ccccCCCCCeeeccchH
Confidence 3888999999999999999999987643 3689999999999999999999987 88889999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEec----CCCcCCCCChhhHHHhhhh-cCCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccc
Q 014373 107 ALDFVISEAKKYKIRLILSL----TNNWDAYGGKAQYVKWGKA-AGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFT 181 (426)
Q Consensus 107 ~lD~~l~~a~~~Gi~vil~l----~~~w~~~gg~~~y~~W~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~t 181 (426)
.|.++|++|++.||+||+-. +..| ++||.|. |... .+..+. -+|+...++.++|+++|+.++-. .
T Consensus 99 DL~~Fl~la~e~GLyvilRpGPYIcAEw-~~GGlP~---WL~~~~~i~~R-----s~d~~fl~~v~~~~~~l~~~l~~-~ 168 (840)
T PLN03059 99 DLVKFIKVVQAAGLYVHLRIGPYICAEW-NFGGFPV---WLKYVPGIEFR-----TDNGPFKAAMQKFTEKIVDMMKS-E 168 (840)
T ss_pred HHHHHHHHHHHcCCEEEecCCcceeeee-cCCCCch---hhhcCCCcccc-----cCCHHHHHHHHHHHHHHHHHHhh-c
Confidence 99999999999999999986 3445 4688865 6532 222111 24788888888888888887410 1
Q ss_pred cccccCCCcEEEEEeccCCCCCCC---CChhHHHHHHHHHHHHHHhcCCCCE
Q 014373 182 NLTYKNDPTIFAWELMNEPRCTSD---PSGDTLQSWIQEMAVYVKSIDAKHL 230 (426)
Q Consensus 182 g~~y~~~p~I~~weL~NEp~~~~~---~~~~~~~~w~~~~~~~Ir~~dp~~l 230 (426)
+..+.+-..|++.++.||-..... ..+..+.+|+++|+ ++..-+.+
T Consensus 169 ~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~---~~~Gi~VP 217 (840)
T PLN03059 169 KLFEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADMA---VKLGTGVP 217 (840)
T ss_pred ceeecCCCcEEEEEecccccceecccCcchHHHHHHHHHHH---HHcCCCcc
Confidence 222566667999999999876421 12345666666555 44444433
No 28
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=99.37 E-value=7.2e-12 Score=126.82 Aligned_cols=114 Identities=29% Similarity=0.318 Sum_probs=84.2
Q ss_pred HHHHHHHHHHCCCCEEEeccccCCCccccc----CCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhHH
Q 014373 65 VSELFHQASSAGLTVCRTWAFNDGQWRALQ----TSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYV 140 (426)
Q Consensus 65 ~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~----~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~ 140 (426)
.++++..|+++|+|+||+.... | .++ ..|.......+..||++|++|+++||+|+|++|..-....+.+.
T Consensus 75 ~~~~~~~ik~~G~n~VRiPi~~---~-~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~-- 148 (407)
T COG2730 75 TEEDFDQIKSAGFNAVRIPIGY---W-ALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEH-- 148 (407)
T ss_pred hhhHHHHHHHcCCcEEEcccch---h-hhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCc--
Confidence 4899999999999999996531 1 112 24444445666699999999999999999999875311111110
Q ss_pred HhhhhcCCCCCCCCCcCCC-HHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCC
Q 014373 141 KWGKAAGLNLTSDDEFFSH-TTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRC 202 (426)
Q Consensus 141 ~W~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~ 202 (426)
.| ....|.. .+.++.+.+.++.|+.| |++.++|+++++.|||+.
T Consensus 149 s~----------~~~~~~~~~~~~~~~~~~w~~ia~~--------f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 149 SG----------YTSDYKEENENVEATIDIWKFIANR--------FKNYDTVIGFELINEPNG 193 (407)
T ss_pred cc----------ccccccccchhHHHHHHHHHHHHHh--------ccCCCceeeeeeecCCcc
Confidence 01 1122333 56789999999999999 999999999999999996
No 29
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=99.37 E-value=1e-12 Score=103.90 Aligned_cols=75 Identities=31% Similarity=0.627 Sum_probs=47.2
Q ss_pred ccCCCcEEEEEeccC-CCCCC--------CCChhHHHHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCCccCCCCccc
Q 014373 185 YKNDPTIFAWELMNE-PRCTS--------DPSGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYA 255 (426)
Q Consensus 185 y~~~p~I~~weL~NE-p~~~~--------~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~np~~y~ 255 (426)
|+++|+|++|+|+|| |.... ....+.+.+|+++++++||++||+++||+|..+. . .
T Consensus 5 ~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~g~~~~---~-----------~- 69 (88)
T PF12876_consen 5 FGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTSGFWGG---D-----------W- 69 (88)
T ss_dssp TT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE--B--S---------------T-
T ss_pred hcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEeecccC---C-----------H-
Confidence 999999999999999 66221 0123678899999999999999999999885321 0 0
Q ss_pred ccccchhhhhcCCCCcceEEEecc
Q 014373 256 TQVGTDFIRNHQTLGVDFASVHIY 279 (426)
Q Consensus 256 ~~~g~d~~~~~~~~~iD~~s~H~Y 279 (426)
..+.. ...+.+||++||.|
T Consensus 70 ----~~~~~-~~~~~~DvisfH~Y 88 (88)
T PF12876_consen 70 ----EDLEQ-LQAENLDVISFHPY 88 (88)
T ss_dssp ----THHHH-S--TT-SSEEB-EE
T ss_pred ----HHHHH-hchhcCCEEeeecC
Confidence 11222 23578999999998
No 30
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=99.25 E-value=1.8e-10 Score=119.43 Aligned_cols=279 Identities=16% Similarity=0.248 Sum_probs=131.0
Q ss_pred hHHHHHHHHHHH-HCCCCEEEecc-ccCCCccccc-CCCCC--CChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCC--C
Q 014373 62 RGKVSELFHQAS-SAGLTVCRTWA-FNDGQWRALQ-TSPSV--YDEEVFKALDFVISEAKKYKIRLILSLTNNWDAY--G 134 (426)
Q Consensus 62 ~~~~~~dl~~~~-~~G~N~vRi~~-~~~~~~~~~~-~~~g~--~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~--g 134 (426)
+.++...|..++ ++|+..||+|. |+++.--..+ ...|. || |..+|+++|...++||+++|.|.--.... +
T Consensus 38 ~~~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Yn---f~~lD~i~D~l~~~g~~P~vel~f~p~~~~~~ 114 (486)
T PF01229_consen 38 RADWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYN---FTYLDQILDFLLENGLKPFVELGFMPMALASG 114 (486)
T ss_dssp BHHHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE-----HHHHHHHHHHHHCT-EEEEEE-SB-GGGBSS
T ss_pred hHHHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCC---hHHHHHHHHHHHHcCCEEEEEEEechhhhcCC
Confidence 567888888887 99999999974 5443211111 12221 56 99999999999999999999984211100 0
Q ss_pred ChhhHHHhhhhcCCCCCCCCCcCCCHHHHHHH----HHHHHHHHhcccccccccccCCC-cEEEEEeccCCCCCCCC---
Q 014373 135 GKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYY----KAHVKTVLNRVNTFTNLTYKNDP-TIFAWELMNEPRCTSDP--- 206 (426)
Q Consensus 135 g~~~y~~W~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~iv~r~n~~tg~~y~~~p-~I~~weL~NEp~~~~~~--- 206 (426)
....+ .| ....+.|+-.+.+ +.+++++++| |+.+. .--.||++|||+.....
T Consensus 115 ~~~~~-~~-----------~~~~~pp~~~~~W~~lv~~~~~h~~~R--------YG~~ev~~W~fEiWNEPd~~~f~~~~ 174 (486)
T PF01229_consen 115 YQTVF-WY-----------KGNISPPKDYEKWRDLVRAFARHYIDR--------YGIEEVSTWYFEIWNEPDLKDFWWDG 174 (486)
T ss_dssp --EET-TT-----------TEE-S-BS-HHHHHHHHHHHHHHHHHH--------HHHHHHTTSEEEESS-TTSTTTSGGG
T ss_pred CCccc-cc-----------cCCcCCcccHHHHHHHHHHHHHHHHhh--------cCCccccceeEEeCcCCCcccccCCC
Confidence 00000 00 0001123333444 4555555555 65321 11247999999986432
Q ss_pred ChhHHHHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCCccCCCCcccccccchhhhhcCCCCcceEEEeccCCCccCC
Q 014373 207 SGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDFASVHIYADSWISQ 286 (426)
Q Consensus 207 ~~~~~~~w~~~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~np~~y~~~~g~d~~~~~~~~~iD~~s~H~Y~~~w~~~ 286 (426)
..+.+.+.++.++.+||+.+|...|. | .++.. .. .. |- ....+|.... ...+||+|+|.|+......
T Consensus 175 ~~~ey~~ly~~~~~~iK~~~p~~~vG-G-p~~~~-~~-------~~-~~-~~~l~~~~~~-~~~~DfiS~H~y~~~~~~~ 241 (486)
T PF01229_consen 175 TPEEYFELYDATARAIKAVDPELKVG-G-PAFAW-AY-------DE-WC-EDFLEFCKGN-NCPLDFISFHSYGTDSAED 241 (486)
T ss_dssp -HHHHHHHHHHHHHHHHHH-TTSEEE-E-EEEET-T--------TH-HH-HHHHHHHHHC-T---SEEEEEEE-BESESE
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCccc-C-ccccc-cH-------HH-HH-HHHHHHHhcC-CCCCCEEEEEecccccccc
Confidence 23468888999999999999998873 2 11111 00 00 10 0112222222 2468999999998643211
Q ss_pred --CChhHHHHHHHHH---HHHHHHHHHH--hCCCcEEEEecCCCCCCCC--CChHHHHHHHHHHHHHHHhhhhcCCCccc
Q 014373 287 --TISDAHLQFTKSW---MEAHIEDAEK--YLRMPVLFTEFGVSAKDTG--YNTSFRDTLISSVYKTLLNSTKKGGSGAG 357 (426)
Q Consensus 287 --~~~~~~~~~~~~~---l~~~~~~a~~--~~~kPv~v~EfG~~~~~~~--~~~~~r~~~~~~~~~~~~~~~~~~~~~~G 357 (426)
......+...... +....+.... ..+.|+.++||+....... .....+.+|+-. .+++.. +....+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~~~~tE~n~~~~~~~~~~dt~~~aA~i~k---~lL~~~--~~~l~~ 316 (486)
T PF01229_consen 242 INENMYERIEDSRRLFPELKETRPIINDEADPNLPLYITEWNASISPRNPQHDTCFKAAYIAK---NLLSND--GAFLDS 316 (486)
T ss_dssp -SS-EEEEB--HHHHHHHHHHHHHHHHTSSSTT--EEEEEEES-SSTT-GGGGSHHHHHHHHH----HHHHG--GGT-SE
T ss_pred cchhHHhhhhhHHHHHHHHHHHHHHHhhccCCCCceeecccccccCCCcchhccccchhhHHH---HHHHhh--hhhhhh
Confidence 0000111111111 1122122222 1468899999987765311 112244444332 123322 122456
Q ss_pred ccccccCCC----C--CCCCCCCceEEeCC
Q 014373 358 SLLWQLFPD----G--TDYMNDGYAIVLSK 381 (426)
Q Consensus 358 ~~~W~~~~~----g--~~~~~dg~~i~~~~ 381 (426)
..+|++.+. + ..+...|||+....
T Consensus 317 ~sywt~sD~Fee~~~~~~pf~ggfGLlt~~ 346 (486)
T PF01229_consen 317 FSYWTFSDRFEENGTPRKPFHGGFGLLTKL 346 (486)
T ss_dssp EEES-SBS---TTSS-SSSSSS-S-SEECC
T ss_pred hhccchhhhhhccCCCCCceecchhhhhcc
Confidence 888999763 1 13445789987755
No 31
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.24 E-value=1.7e-09 Score=100.65 Aligned_cols=271 Identities=17% Similarity=0.239 Sum_probs=153.0
Q ss_pred EEEEeeccchhhhccCCC----ChHHHHHHHHHHHHCCCCEEEeccccCCCcccc-cCCCCCCChHHHHHHHHHHHHHHH
Q 014373 43 YVNGFNTYWLMVFAADQS----TRGKVSELFHQASSAGLTVCRTWAFNDGQWRAL-QTSPSVYDEEVFKALDFVISEAKK 117 (426)
Q Consensus 43 ~~~G~N~~~~~~~~~~~~----~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~-~~~~g~~~e~~l~~lD~~l~~a~~ 117 (426)
|+.|+..-++..+..... +.....+.|+.+|.+|+|.||+=++.+. +..- ++--|-.+ -++..-++-..|++
T Consensus 39 FikGaDis~l~~lE~~Gvkf~d~ng~~qD~~~iLK~~GvNyvRlRvwndP-~dsngn~yggGnn--D~~k~ieiakRAk~ 115 (403)
T COG3867 39 FIKGADISSLIELENSGVKFFDTNGVRQDALQILKNHGVNYVRLRVWNDP-YDSNGNGYGGGNN--DLKKAIEIAKRAKN 115 (403)
T ss_pred hhccccHHHHHHHHHcCceEEccCChHHHHHHHHHHcCcCeEEEEEecCC-ccCCCCccCCCcc--hHHHHHHHHHHHHh
Confidence 567777665544432111 2335566799999999999998544332 1100 11112222 24555567778999
Q ss_pred cCCEEEEecCC--CcCCCCChhhHHHhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCC-cEEEE
Q 014373 118 YKIRLILSLTN--NWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDP-TIFAW 194 (426)
Q Consensus 118 ~Gi~vil~l~~--~w~~~gg~~~y~~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p-~I~~w 194 (426)
.||||++++|. +|.+.+-...=..|.. .+-...+++.-.|.+..++. .++.. .+-+.
T Consensus 116 ~GmKVl~dFHYSDfwaDPakQ~kPkaW~~------------l~fe~lk~avy~yTk~~l~~--------m~~eGi~pdmV 175 (403)
T COG3867 116 LGMKVLLDFHYSDFWADPAKQKKPKAWEN------------LNFEQLKKAVYSYTKYVLTT--------MKKEGILPDMV 175 (403)
T ss_pred cCcEEEeeccchhhccChhhcCCcHHhhh------------cCHHHHHHHHHHHHHHHHHH--------HHHcCCCccce
Confidence 99999999984 4544221100001211 11134566666777777776 55552 34457
Q ss_pred EeccCCCCCCCC-C--h---hHHHHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCCccCCCCcccccccchhhhh-cC
Q 014373 195 ELMNEPRCTSDP-S--G---DTLQSWIQEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRN-HQ 267 (426)
Q Consensus 195 eL~NEp~~~~~~-~--~---~~~~~w~~~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~np~~y~~~~g~d~~~~-~~ 267 (426)
+++||-+....+ + + +.+.+.+++-+.+||+.+|+.+|.+.... +. ++.-|.. -|... ..
T Consensus 176 QVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~p~ikv~lHla~--g~--------~n~~y~~----~fd~ltk~ 241 (403)
T COG3867 176 QVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVSPTIKVALHLAE--GE--------NNSLYRW----IFDELTKR 241 (403)
T ss_pred EeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcCCCceEEEEecC--CC--------CCchhhH----HHHHHHHc
Confidence 999999876432 2 2 34556677888899999999999876321 11 1111200 01111 11
Q ss_pred CCCcceEEEeccCCCccCCCChhHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCC---CC-------------CC--
Q 014373 268 TLGVDFASVHIYADSWISQTISDAHLQFTKSWMEAHIEDAEKYLRMPVLFTEFGVSAK---DT-------------GY-- 329 (426)
Q Consensus 268 ~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~l~~~~~~a~~~~~kPv~v~EfG~~~~---~~-------------~~-- 329 (426)
.-..|+++.-+||. |... +..+..=+ -..|.+ ++|-|+|.|.+.... .. ++
T Consensus 242 nvdfDVig~SyYpy-Whgt------l~nL~~nl---~dia~r-Y~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypi 310 (403)
T COG3867 242 NVDFDVIGSSYYPY-WHGT------LNNLTTNL---NDIASR-YHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPI 310 (403)
T ss_pred CCCceEEeeecccc-ccCc------HHHHHhHH---HHHHHH-hcCeEEEEEecceeeeccCCCCCCcCCcccccCCCce
Confidence 23457789889987 6322 11111111 223444 899999999987322 10 11
Q ss_pred ChHHHHHHHHHHHHHHHhhhhcCCCccccccccc
Q 014373 330 NTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQL 363 (426)
Q Consensus 330 ~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~ 363 (426)
+.+-|..+++++.+.+..--+. .+.|.++|.=
T Consensus 311 tVQGQat~vrDvie~V~nvp~~--~GlGvFYWEp 342 (403)
T COG3867 311 TVQGQATFVRDVIEAVKNVPKS--NGLGVFYWEP 342 (403)
T ss_pred EEechhhHHHHHHHHHHhCCCC--CceEEEEecc
Confidence 3456788888888877643222 2678999963
No 32
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.18 E-value=2.8e-10 Score=119.28 Aligned_cols=174 Identities=17% Similarity=0.268 Sum_probs=124.9
Q ss_pred eCCeEEECCeEEEEEEeeccchhhhccCCCChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHH
Q 014373 31 QGNQFVVNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDF 110 (426)
Q Consensus 31 ~g~~f~~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~ 110 (426)
++..+.++|+++.+.|..++.... .++.+.++|+.||++|+|+||+-.| .|..++|+.|+|+-. .+|.
T Consensus 4 ~~~~~~~dg~~~~l~gG~y~p~~~------p~~~w~ddl~~mk~~G~N~V~ig~f---aW~~~eP~eG~fdf~---~~D~ 71 (673)
T COG1874 4 DGYSFIRDGRRILLYGGDYYPERW------PRETWMDDLRKMKALGLNTVRIGYF---AWNLHEPEEGKFDFT---WLDE 71 (673)
T ss_pred cccceeeCCceeEEeccccChHHC------CHHHHHHHHHHHHHhCCCeeEeeeE---EeeccCccccccCcc---cchH
Confidence 456788999999999998764332 3589999999999999999999444 288899999999944 5566
Q ss_pred H-HHHHHHcCCEEEEecCCCcCCCCChh-----hHHHhhhh--cCC---CCCCCCCcCCCHHHHHHHHHHHHHHHhcccc
Q 014373 111 V-ISEAKKYKIRLILSLTNNWDAYGGKA-----QYVKWGKA--AGL---NLTSDDEFFSHTTLKSYYKAHVKTVLNRVNT 179 (426)
Q Consensus 111 ~-l~~a~~~Gi~vil~l~~~w~~~gg~~-----~y~~W~~~--~g~---~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~ 179 (426)
. ++.|.+.||+||+..-. .|+.| .|+.|... .+. +...+.-.++++-.++....+++.|++|.
T Consensus 72 ~~l~~a~~~Gl~vil~t~P----~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~-- 145 (673)
T COG1874 72 IFLERAYKAGLYVILRTGP----TGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERL-- 145 (673)
T ss_pred HHHHHHHhcCceEEEecCC----CCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHH--
Confidence 6 99999999999998621 12221 12222211 110 11123345677877777788888888884
Q ss_pred cccccccCCCcEEEEEeccCCCCCC-CC--ChhHHHHHHHHHHHHHHhcCC
Q 014373 180 FTNLTYKNDPTIFAWELMNEPRCTS-DP--SGDTLQSWIQEMAVYVKSIDA 227 (426)
Q Consensus 180 ~tg~~y~~~p~I~~weL~NEp~~~~-~~--~~~~~~~w~~~~~~~Ir~~dp 227 (426)
|+++|+|++|.+-||-.+.. .+ +...++.|+++-...|+.++.
T Consensus 146 -----~~~~~~v~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~ 191 (673)
T COG1874 146 -----YGNGPAVITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNE 191 (673)
T ss_pred -----hccCCceeEEEccCccCCccccccccHHHHHHHHHhCcchHHhhhh
Confidence 99999999999999998732 22 235677798887766666543
No 33
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.97 E-value=5.4e-09 Score=107.34 Aligned_cols=151 Identities=21% Similarity=0.338 Sum_probs=122.6
Q ss_pred EEEeCCeEEECCeEEEEEEeeccchhhhccCCCChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHH
Q 014373 28 VQKQGNQFVVNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKA 107 (426)
Q Consensus 28 v~~~g~~f~~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~ 107 (426)
|.-++++|.+||+++.+.....||... .++.+++.++.+|+.|+|+|-+++| |+.++|.||+|+-+.--.
T Consensus 20 v~yd~~~~~idG~r~~~isGsIHY~R~------~pe~W~~~i~k~k~~Gln~IqtYVf----Wn~Hep~~g~y~FsG~~D 89 (649)
T KOG0496|consen 20 VTYDKRSLLIDGQRFILISGSIHYPRS------TPEMWPDLIKKAKAGGLNVIQTYVF----WNLHEPSPGKYDFSGRYD 89 (649)
T ss_pred EeccccceeecCCeeEEEEeccccccC------ChhhhHHHHHHHHhcCCceeeeeee----cccccCCCCcccccchhH
Confidence 666788999999999999999988754 3689999999999999999999988 777899999998888778
Q ss_pred HHHHHHHHHHcCCEEEEecC----CCcCCCCChhhHHHhhhhc-CCCCCCCCCc-CCCHHHHHHHHHHHHHHHhcccccc
Q 014373 108 LDFVISEAKKYKIRLILSLT----NNWDAYGGKAQYVKWGKAA-GLNLTSDDEF-FSHTTLKSYYKAHVKTVLNRVNTFT 181 (426)
Q Consensus 108 lD~~l~~a~~~Gi~vil~l~----~~w~~~gg~~~y~~W~~~~-g~~~~~~~~~-~~~~~~~~~~~~~~~~iv~r~n~~t 181 (426)
|-++|.+|++.|++|++.+- ..| ++||.|. |.... |+ .| -+|+..++.++++++.|+.+.+
T Consensus 90 lvkFikl~~~~GLyv~LRiGPyIcaEw-~~GG~P~---wL~~~pg~------~~Rt~nepfk~~~~~~~~~iv~~mk--- 156 (649)
T KOG0496|consen 90 LVKFIKLIHKAGLYVILRIGPYICAEW-NFGGLPW---WLRNVPGI------VFRTDNEPFKAEMERWTTKIVPMMK--- 156 (649)
T ss_pred HHHHHHHHHHCCeEEEecCCCeEEecc-cCCCcch---hhhhCCce------EEecCChHHHHHHHHHHHHHHHHHH---
Confidence 88899999999999999863 345 4688874 54321 21 12 2367889999999999999765
Q ss_pred cccccCCCcEEEEEeccCCC
Q 014373 182 NLTYKNDPTIFAWELMNEPR 201 (426)
Q Consensus 182 g~~y~~~p~I~~weL~NEp~ 201 (426)
..-+++-.-|++-++.||-.
T Consensus 157 ~L~~~qGGPIIl~QIENEYG 176 (649)
T KOG0496|consen 157 KLFASQGGPIILVQIENEYG 176 (649)
T ss_pred HHHhhcCCCEEEEEeechhh
Confidence 34466666788899999997
No 34
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=98.92 E-value=3.2e-08 Score=97.10 Aligned_cols=246 Identities=18% Similarity=0.308 Sum_probs=148.0
Q ss_pred HHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhHHHhhhhcCC
Q 014373 69 FHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGL 148 (426)
Q Consensus 69 l~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~g~ 148 (426)
...+-..-+|.+=.- +..-|..+++.+|+++ ++..|.+++.|+++||+|---.. -|.. +-+.|....
T Consensus 27 ~~~~~~~~Fn~~t~e--N~~Kw~~~e~~~g~~~---~~~~D~~~~~a~~~g~~vrGH~L-vW~~-----~~P~w~~~~-- 93 (320)
T PF00331_consen 27 YRELFAKHFNSVTPE--NEMKWGSIEPEPGRFN---FESADAILDWARENGIKVRGHTL-VWHS-----QTPDWVFNL-- 93 (320)
T ss_dssp HHHHHHHH-SEEEES--STTSHHHHESBTTBEE----HHHHHHHHHHHHTT-EEEEEEE-EESS-----SS-HHHHTS--
T ss_pred HHHHHHHhCCeeeec--cccchhhhcCCCCccC---ccchhHHHHHHHhcCcceeeeeE-EEcc-----cccceeeec--
Confidence 344444557766541 1123667889999998 88899999999999999953210 0322 224576432
Q ss_pred CCCCCCCcCCCH---HHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCCCCC------Ch--hHH-HHHHH
Q 014373 149 NLTSDDEFFSHT---TLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDP------SG--DTL-QSWIQ 216 (426)
Q Consensus 149 ~~~~~~~~~~~~---~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~~------~~--~~~-~~w~~ 216 (426)
.-++.. .+++..+++++.+++| |++.+.|.+|++.|||...... +. +.+ ..++.
T Consensus 94 ------~~~~~~~~~~~~~~l~~~I~~v~~~--------y~~~g~i~~WDVvNE~i~~~~~~~~~r~~~~~~~lG~~yi~ 159 (320)
T PF00331_consen 94 ------ANGSPDEKEELRARLENHIKTVVTR--------YKDKGRIYAWDVVNEAIDDDGNPGGLRDSPWYDALGPDYIA 159 (320)
T ss_dssp ------TTSSBHHHHHHHHHHHHHHHHHHHH--------TTTTTTESEEEEEES-B-TTSSSSSBCTSHHHHHHTTCHHH
T ss_pred ------cCCCcccHHHHHHHHHHHHHHHHhH--------hccccceEEEEEeeecccCCCccccccCChhhhcccHhHHH
Confidence 012223 3889999999999999 9987889999999999765420 00 111 24788
Q ss_pred HHHHHHHhcCCCCEEEeccccccCCCCCCCccCCCCcccccccchhhhhc--CCCCcceEEE--eccCCCccCCCChhHH
Q 014373 217 EMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNH--QTLGVDFASV--HIYADSWISQTISDAH 292 (426)
Q Consensus 217 ~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~np~~y~~~~g~d~~~~~--~~~~iD~~s~--H~Y~~~w~~~~~~~~~ 292 (426)
.+.+..|+.||+....+.. |+...+. . ...+ ...+..+ ..-.||-+++ |+-....
T Consensus 160 ~aF~~A~~~~P~a~L~~ND---y~~~~~~--k--~~~~-----~~lv~~l~~~gvpIdgIG~Q~H~~~~~~--------- 218 (320)
T PF00331_consen 160 DAFRAAREADPNAKLFYND---YNIESPA--K--RDAY-----LNLVKDLKARGVPIDGIGLQSHFDAGYP--------- 218 (320)
T ss_dssp HHHHHHHHHHTTSEEEEEE---SSTTSTH--H--HHHH-----HHHHHHHHHTTHCS-EEEEEEEEETTSS---------
T ss_pred HHHHHHHHhCCCcEEEecc---ccccchH--H--HHHH-----HHHHHHHHhCCCccceechhhccCCCCC---------
Confidence 8899999999998887753 2211100 0 0000 0111111 1224677666 5443321
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCCC---CChHHHHHHHHHHHHHHHhhhhcCC--CcccccccccCCCC
Q 014373 293 LQFTKSWMEAHIEDAEKYLRMPVLFTEFGVSAKDTG---YNTSFRDTLISSVYKTLLNSTKKGG--SGAGSLLWQLFPDG 367 (426)
Q Consensus 293 ~~~~~~~l~~~~~~a~~~~~kPv~v~EfG~~~~~~~---~~~~~r~~~~~~~~~~~~~~~~~~~--~~~G~~~W~~~~~g 367 (426)
...+...++.... +|.||.|+|+.+...... ..+..|..+++.++..+++. + .+.|..+|.+.+.
T Consensus 219 ----~~~i~~~l~~~~~-~Gl~i~ITElDv~~~~~~~~~~~~~~qA~~~~~~~~~~~~~----~~~~v~git~Wg~~D~- 288 (320)
T PF00331_consen 219 ----PEQIWNALDRFAS-LGLPIHITELDVRDDDNPPDAEEEEAQAEYYRDFLTACFSH----PPAAVEGITWWGFTDG- 288 (320)
T ss_dssp ----HHHHHHHHHHHHT-TTSEEEEEEEEEESSSTTSCHHHHHHHHHHHHHHHHHHHHT----THCTEEEEEESSSBTT-
T ss_pred ----HHHHHHHHHHHHH-cCCceEEEeeeecCCCCCcchHHHHHHHHHHHHHHHHHHhC----CccCCCEEEEECCCCC-
Confidence 1224444555555 899999999998876522 12556777777777766653 4 5899999999987
Q ss_pred CCCCCC
Q 014373 368 TDYMND 373 (426)
Q Consensus 368 ~~~~~d 373 (426)
..|..
T Consensus 289 -~sW~~ 293 (320)
T PF00331_consen 289 -YSWRP 293 (320)
T ss_dssp -GSTTG
T ss_pred -CcccC
Confidence 45543
No 35
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=98.71 E-value=5.3e-07 Score=90.68 Aligned_cols=143 Identities=20% Similarity=0.348 Sum_probs=97.2
Q ss_pred ccchhcccccccCC-----CCCcEEEe----------CCe--EEECCeEEEEEEeeccchhhhccCCCChHHHHHHHHHH
Q 014373 10 SLQRIYDLQVREDD-----DWQMVQKQ----------GNQ--FVVNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQA 72 (426)
Q Consensus 10 ~~~~~~~~~~~~~~-----~~~fv~~~----------g~~--f~~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~ 72 (426)
..+++|++++.-.. +.+|-++. |.. |.+||.|.++.|.|-+-...+. +..+.+.++--|+..
T Consensus 288 g~q~~y~~~v~~gg~~~ekki~frtvelv~~p~kp~~g~nfyfkin~~pvflkg~nwip~s~f~-dr~t~~~~~~LL~Sv 366 (867)
T KOG2230|consen 288 GEQKLYDVVVSMGGQVKEKKIGFKTVELVQDPKKPEKGRNFYFKINDEPVFLKGTNWIPVSMFR-DRENIAKTEFLLDSV 366 (867)
T ss_pred CcceeEEEEEecCceeeeeeeeeEEEEEeecCCCCCCCceeEEEEcCcEEEeecCCccChHHHH-hhHHHHHHHHHHHHH
Confidence 35677776654422 45663321 232 5589999999999943222222 333456778889999
Q ss_pred HHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhHHHhhhhcCCCCCC
Q 014373 73 SSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTS 152 (426)
Q Consensus 73 ~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~g~~~~~ 152 (426)
++.|+|++|+|.- |.|.. |++...|.+.||.|.=++.- +.
T Consensus 367 ~e~~MN~lRVWGG------------GvYEs------d~FY~lad~lGilVWQD~MF--------------AC-------- 406 (867)
T KOG2230|consen 367 AEVGMNMLRVWGG------------GVYES------DYFYQLADSLGILVWQDMMF--------------AC-------- 406 (867)
T ss_pred HHhCcceEEEecC------------ccccc------hhHHHHhhhccceehhhhHH--------------Hh--------
Confidence 9999999999863 22211 57889999999988444311 10
Q ss_pred CCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCC
Q 014373 153 DDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRC 202 (426)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~ 202 (426)
.-+-++.+.....+.-++.=+.| .+.||+|+.|.--||-..
T Consensus 407 -AlYPt~~eFl~sv~eEV~yn~~R--------ls~HpSviIfsgNNENEa 447 (867)
T KOG2230|consen 407 -ALYPTNDEFLSSVREEVRYNAMR--------LSHHPSVIIFSGNNENEA 447 (867)
T ss_pred -hcccCcHHHHHHHHHHHHHHHHh--------hccCCeEEEEeCCCccHH
Confidence 11235666777778888888899 999999999999999764
No 36
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=98.47 E-value=1.8e-05 Score=75.42 Aligned_cols=220 Identities=22% Similarity=0.334 Sum_probs=127.5
Q ss_pred cccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEe-cCCCcCCCCChhhHHHhhhhcCCCCCCCCCcCCCHHHHHHHHH
Q 014373 90 WRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILS-LTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKA 168 (426)
Q Consensus 90 ~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~-l~~~w~~~gg~~~y~~W~~~~g~~~~~~~~~~~~~~~~~~~~~ 168 (426)
|..+++++|.|+ |+.=|.+++-|+++||.+--- |. |.. +.++|.... + .+-+.....+++
T Consensus 69 we~i~p~~G~f~---Fe~AD~ia~FAr~h~m~lhGHtLv--W~~-----q~P~W~~~~--------e-~~~~~~~~~~e~ 129 (345)
T COG3693 69 WEAIEPERGRFN---FEAADAIANFARKHNMPLHGHTLV--WHS-----QVPDWLFGD--------E-LSKEALAKMVEE 129 (345)
T ss_pred cccccCCCCccC---ccchHHHHHHHHHcCCeeccceee--ecc-----cCCchhhcc--------c-cChHHHHHHHHH
Confidence 778899999998 777899999999999976221 11 211 334564211 1 344788999999
Q ss_pred HHHHHHhcccccccccccCCCcEEEEEeccCCCCCCCC-------ChhHHHHHHHHHHHHHHhcCCCCEEEeccccccCC
Q 014373 169 HVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDP-------SGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGFYGP 241 (426)
Q Consensus 169 ~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~~-------~~~~~~~w~~~~~~~Ir~~dp~~lV~~g~~g~~~~ 241 (426)
++..++.| |++. +.+|++.|||-..... ++-.-.+|++......|+.||...+.+.. |+.
T Consensus 130 hI~tV~~r--------Ykg~--~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~ND---Y~i 196 (345)
T COG3693 130 HIKTVVGR--------YKGS--VASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVIND---YSI 196 (345)
T ss_pred HHHHHHHh--------ccCc--eeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEeec---ccc
Confidence 99999999 9995 8999999999763210 01123356777788889999998765543 211
Q ss_pred CCCCCccCCCCcccccccchhhh------hcCCCCcceEEE--eccCCCccCCCChhHHHHHHHHHHHHHHHHHHHhCCC
Q 014373 242 SAPDRAKFNPNSYATQVGTDFIR------NHQTLGVDFASV--HIYADSWISQTISDAHLQFTKSWMEAHIEDAEKYLRM 313 (426)
Q Consensus 242 ~~~~~~~~np~~y~~~~g~d~~~------~~~~~~iD~~s~--H~Y~~~w~~~~~~~~~~~~~~~~l~~~~~~a~~~~~k 313 (426)
. .+|. -.++.. ......||=+++ |+=.. |.. .+.+..-+. ...+ .|.
T Consensus 197 e------~~~~------kr~~~~nlI~~LkekG~pIDgiG~QsH~~~~-~~~-------~~~~~~a~~----~~~k-~Gl 251 (345)
T COG3693 197 E------GNPA------KRNYVLNLIEELKEKGAPIDGIGIQSHFSGD-GPS-------IEKMRAALL----KFSK-LGL 251 (345)
T ss_pred c------CChH------HHHHHHHHHHHHHHCCCCccceeeeeeecCC-CCC-------HHHHHHHHH----HHhh-cCC
Confidence 1 1231 011111 112345676655 53222 211 111111122 2233 699
Q ss_pred cEEEEecCCCCCCCCCChHHHHHHHHH-----HHHHHHhhhhcCCCcccccccccCCCCCCCCC
Q 014373 314 PVLFTEFGVSAKDTGYNTSFRDTLISS-----VYKTLLNSTKKGGSGAGSLLWQLFPDGTDYMN 372 (426)
Q Consensus 314 Pv~v~EfG~~~~~~~~~~~~r~~~~~~-----~~~~~~~~~~~~~~~~G~~~W~~~~~g~~~~~ 372 (426)
|++|+|+-+....+. +...|+...++ .+...+. ....+.+..+|.+.|. .+|-
T Consensus 252 ~i~VTELD~~~~~P~-~~~p~~~~~~~~~~~~~f~~~~~---~~~~v~~it~WGi~D~--ySWl 309 (345)
T COG3693 252 PIYVTELDMSDYTPD-SGAPRLYLQKAASRAKAFLLLLL---NPNQVKAITFWGITDR--YSWL 309 (345)
T ss_pred CceEEEeeeeccCCC-CccHHHHHHHHHHHHHHHHHHHh---cccccceEEEeeeccC--cccc
Confidence 999999988874321 11222222221 1222222 1223678999999987 4443
No 37
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=98.46 E-value=6.8e-06 Score=72.73 Aligned_cols=140 Identities=16% Similarity=0.247 Sum_probs=96.5
Q ss_pred CChHHHHHHHHHHHHCCCCEEEe-ccc-cCCC-cccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCCh
Q 014373 60 STRGKVSELFHQASSAGLTVCRT-WAF-NDGQ-WRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGK 136 (426)
Q Consensus 60 ~~~~~~~~dl~~~~~~G~N~vRi-~~~-~~~~-~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~ 136 (426)
.+.++++++|+.|+++|+++|=+ |.- .... ++. +-.++.+....-+.|+.+|++|+++||+|++-|....
T Consensus 17 ~~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps-~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~------ 89 (166)
T PF14488_consen 17 WTPAQWREEFRAMKAIGIDTLILQWTGYGGFAFYPS-KLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDP------ 89 (166)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeecCCcccCCc-cccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCc------
Confidence 46789999999999999998855 221 1110 111 1012233334456889999999999999999984320
Q ss_pred hhHHHhhhhcCCCCCCCCCcCCCHH-HHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCCCCCChhHHHHHH
Q 014373 137 AQYVKWGKAAGLNLTSDDEFFSHTT-LKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWI 215 (426)
Q Consensus 137 ~~y~~W~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~~~~~~~~~w~ 215 (426)
.|... ++++ -.+.-+..++++.++ |++||++-||=|-.|+..... ...+.+
T Consensus 90 ----~~w~~------------~~~~~~~~~~~~v~~el~~~--------yg~h~sf~GWYip~E~~~~~~----~~~~~~ 141 (166)
T PF14488_consen 90 ----DYWDQ------------GDLDWEAERNKQVADELWQR--------YGHHPSFYGWYIPYEIDDYNW----NAPERF 141 (166)
T ss_pred ----hhhhc------------cCHHHHHHHHHHHHHHHHHH--------HcCCCCCceEEEecccCCccc----chHHHH
Confidence 12111 1222 222334577788888 999999999999999987642 235566
Q ss_pred HHHHHHHHhcCCCCEEEec
Q 014373 216 QEMAVYVKSIDAKHLVEIG 234 (426)
Q Consensus 216 ~~~~~~Ir~~dp~~lV~~g 234 (426)
+.+..++|++.|+.+|.+.
T Consensus 142 ~~l~~~lk~~s~~~Pv~IS 160 (166)
T PF14488_consen 142 ALLGKYLKQISPGKPVMIS 160 (166)
T ss_pred HHHHHHHHHhCCCCCeEEe
Confidence 8888999999999998875
No 38
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=98.45 E-value=1.9e-05 Score=73.01 Aligned_cols=203 Identities=18% Similarity=0.238 Sum_probs=124.9
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhHH
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYV 140 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~ 140 (426)
+-++++.||++++..+. .||++. .+ -..|..++.+|.+.|+++++-+ |
T Consensus 61 Sa~~~~sDLe~l~~~t~-~IR~Y~-sD-----------------Cn~le~v~pAa~~~g~kv~lGi---w---------- 108 (305)
T COG5309 61 SADQVASDLELLASYTH-SIRTYG-SD-----------------CNTLENVLPAAEASGFKVFLGI---W---------- 108 (305)
T ss_pred CHHHHHhHHHHhccCCc-eEEEee-cc-----------------chhhhhhHHHHHhcCceEEEEE---e----------
Confidence 56899999999999998 999965 21 1134578899999999999976 2
Q ss_pred HhhhhcCCCCCCCCCcCCCHHHHHHHH-HHHHHHHhcccccccccccCCCcEEEEEeccCCCCCCCCChhHHHHHHHHHH
Q 014373 141 KWGKAAGLNLTSDDEFFSHTTLKSYYK-AHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMA 219 (426)
Q Consensus 141 ~W~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~ 219 (426)
. +| +...... ..+.++.. +...+.|....++||.-...+.+...+.+.+..+.
T Consensus 109 --~--------------td-d~~~~~~~til~ay~~---------~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vr 162 (305)
T COG5309 109 --P--------------TD-DIHDAVEKTILSAYLP---------YNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVR 162 (305)
T ss_pred --e--------------cc-chhhhHHHHHHHHHhc---------cCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHH
Confidence 1 00 0111111 22222222 66778999999999997776667788999999999
Q ss_pred HHHHhcCCCCEEEeccccccCCCCCCCccCCCCcccccccchhhhhcCCCCcceEEEeccCCCccCCCChhHHHHHHHHH
Q 014373 220 VYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDFASVHIYADSWISQTISDAHLQFTKSW 299 (426)
Q Consensus 220 ~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~np~~y~~~~g~d~~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~ 299 (426)
.++++.+-+-+|+... .| .. ...||. .+...||+..|.-+. |.........-.+....
T Consensus 163 sav~~agy~gpV~T~d-sw-~~-----~~~np~--------------l~~~SDfia~N~~aY-wd~~~~a~~~~~f~~~q 220 (305)
T COG5309 163 SAVKEAGYDGPVTTVD-SW-NV-----VINNPE--------------LCQASDFIAANAHAY-WDGQTVANAAGTFLLEQ 220 (305)
T ss_pred HHHHhcCCCCceeecc-cc-ee-----eeCChH--------------Hhhhhhhhhcccchh-ccccchhhhhhHHHHHH
Confidence 9999888777776542 11 10 001332 234458887765543 53222111111222111
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCCCCCCC-----CChHHHHHHHHHHHHHH
Q 014373 300 MEAHIEDAEKYLRMPVLFTEFGVSAKDTG-----YNTSFRDTLISSVYKTL 345 (426)
Q Consensus 300 l~~~~~~a~~~~~kPv~v~EfG~~~~~~~-----~~~~~r~~~~~~~~~~~ 345 (426)
++ .++.+.. .+|+++|+|.|.+.++.. .+.+.+..+++.+...+
T Consensus 221 ~e-~vqsa~g-~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~ 269 (305)
T COG5309 221 LE-RVQSACG-TKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNAL 269 (305)
T ss_pred HH-HHHHhcC-CCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhh
Confidence 21 1222222 349999999999998632 25677777777655433
No 39
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=98.38 E-value=1.3e-09 Score=107.35 Aligned_cols=354 Identities=20% Similarity=0.305 Sum_probs=196.9
Q ss_pred CCCcEEEeCCeEE-ECCeE------EEEEEeeccchhhhccCCCChHHHHHHHHHHHHCCCCEEEecccc----CC----
Q 014373 24 DWQMVQKQGNQFV-VNDQP------FYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFN----DG---- 88 (426)
Q Consensus 24 ~~~fv~~~g~~f~-~~G~~------~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~N~vRi~~~~----~~---- 88 (426)
+.+||.++.-++. |||++ ...+|.|.+++ +.-++.++.+++.++++.+.. .+
T Consensus 34 ~a~~vg~k~lR~fiLDgEdc~d~~G~~na~s~~~y~-------------~~fla~a~~l~lkvlitlivg~~hmgg~Nw~ 100 (587)
T COG3934 34 PAGFVGVKDLRLFILDGEDCRDKEGYRNAGSNVWYA-------------AWFLAPAGYLDLKVLITLIVGLKHMGGTNWR 100 (587)
T ss_pred cccCccceeEEEEEecCcchhhhhceecccccHHHH-------------HHHhhhcccCcceEEEEEeecccccCcceeE
Confidence 5678888877655 99999 77777776543 444555556666666653311 00
Q ss_pred -Cccccc-C----------CCC-CCChHHHH--HHHHHHHHHHHcCCEE---EEecCCCcCCCCChhhHHHhhhh-----
Q 014373 89 -QWRALQ-T----------SPS-VYDEEVFK--ALDFVISEAKKYKIRL---ILSLTNNWDAYGGKAQYVKWGKA----- 145 (426)
Q Consensus 89 -~~~~~~-~----------~~g-~~~e~~l~--~lD~~l~~a~~~Gi~v---il~l~~~w~~~gg~~~y~~W~~~----- 145 (426)
.|..-| + .|+ .|.+..+. ++|-.|....-++.-+ .....+.|.+.++|+.|.+|...
T Consensus 101 Ipwag~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~p~s~N~f~~w~~emy~yiK~ldd~hlvs 180 (587)
T COG3934 101 IPWAGEQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLVEAPISVNNFWDWSGEMYAYIKWLDDGHLVS 180 (587)
T ss_pred eecCCCCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccccccCChhHHHHHHHHHHHHhhccCCCCeee
Confidence 011001 0 111 24444444 4455555555555522 23344567778899999998653
Q ss_pred cCCCCC-------CCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCCCCCC-----hhHHHH
Q 014373 146 AGLNLT-------SDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPS-----GDTLQS 213 (426)
Q Consensus 146 ~g~~~~-------~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~~~-----~~~~~~ 213 (426)
.|-+.. ....++.|-+.-..|..|...++.|+.+.+|.+|.+.|++++|.+.|+++...... ......
T Consensus 181 vGD~~sp~~~~~pyN~r~~vDya~~hLY~hyd~sl~~r~s~~yg~~~l~i~~~~g~~pV~leefGfsta~g~e~s~ayfi 260 (587)
T COG3934 181 VGDPASPWPQYAPYNARFYVDYAANHLYRHYDTSLVSRVSTVYGKPYLDIPTIMGWQPVNLEEFGFSTAFGQENSPAYFI 260 (587)
T ss_pred cCCcCCcccccCCcccceeeccccchhhhhccCChhheeeeeecchhhccchhcccceeeccccCCcccccccccchhhh
Confidence 121111 12234556666677778888888999999999999999999999999998765321 244566
Q ss_pred HHHHHHHHHHhcCCCCEEEecccccc-CCCCCCCccCCCCccccc-ccchhhhhcCCCCcceEEEeccCCCccC--C---
Q 014373 214 WIQEMAVYVKSIDAKHLVEIGLEGFY-GPSAPDRAKFNPNSYATQ-VGTDFIRNHQTLGVDFASVHIYADSWIS--Q--- 286 (426)
Q Consensus 214 w~~~~~~~Ir~~dp~~lV~~g~~g~~-~~~~~~~~~~np~~y~~~-~g~d~~~~~~~~~iD~~s~H~Y~~~w~~--~--- 286 (426)
|+.-+. ---.-..||-.=+ ++- ++..+ |..|... .+--.++....+.+|+-++|.++..|.. .
T Consensus 261 w~~lal---~~ggdGaLiwcls-df~~gsdd~------ey~w~p~el~fgiIradgpek~~a~~~~~fsn~~kdI~~~Sf 330 (587)
T COG3934 261 WIRLAL---DTGGDGALIWCLS-DFHLGSDDS------EYTWGPMELEFGIIRADGPEKIDAMTLHIFSNNWKDISMCSF 330 (587)
T ss_pred hhhhHH---hhcCCceEEEEec-CCccCCCCC------CCccccccceeeeecCCCchhhhHHHHHHhccccceeeeecc
Confidence 765511 1111122331100 111 11111 1111100 0001122233455666777777766531 1
Q ss_pred --CChhHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCC----CCCChHHHHHHHHHHHHHHHhhhhcCCCcccccc
Q 014373 287 --TISDAHLQFTKSWMEAHIEDAEKYLRMPVLFTEFGVSAKD----TGYNTSFRDTLISSVYKTLLNSTKKGGSGAGSLL 360 (426)
Q Consensus 287 --~~~~~~~~~~~~~l~~~~~~a~~~~~kPv~v~EfG~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~ 360 (426)
...+.......-+.++++..+.+ +.+|+++.+++..-.. ++.+...|+..++.+++.-..-+.-.++-+|...
T Consensus 331 q~p~~e~~eikp~~~va~~~fv~e~-~~~~Lf~rv~nl~f~~~~~~~gqpt~~rd~d~~~~l~d~kllmipsgpt~g~Tt 409 (587)
T COG3934 331 QPPTYEAGEIKPRDYVAQHIFVAER-LNKPLFIRVFNLIFDGRQFTPGQPTTYRDRDYKTMLDDAKLLMIPSGPTAGVTT 409 (587)
T ss_pred cCcccccceecchHhhhhceecHhh-hccchhhhcchhHhhhhhhcCCCceEEeccchhhcCCchhheeecCCcccchhH
Confidence 11111222233456777777777 8999999999977654 3445566777777655443333444567889999
Q ss_pred cccCCCCC---------------------CCCCCCceEEeCCCccHHHHHHHHHHHHhhcccC
Q 014373 361 WQLFPDGT---------------------DYMNDGYAIVLSKSPSTSNIISLHSTRIATFNSL 402 (426)
Q Consensus 361 W~~~~~g~---------------------~~~~dg~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (426)
|.+...+. ..|..-||+...+ .+..+.++.++..++.++..
T Consensus 410 w~~llk~vvn~v~~v~Fs~p~ts~h~s~th~wq~lFGv~di~-~~gs~g~~a~~~nVkllg~~ 471 (587)
T COG3934 410 WAWLLKGVVNQVPDVWFSKPDTSYHGSPTHEWQGLFGVFDID-ASGSAGIKAHAANVKLLGKS 471 (587)
T ss_pred HHHHhhhhhccccceeecCCceeecCCCchhhHHhhCCCCCc-cccccccccchhhhcccccc
Confidence 98853321 1233345544333 44555667888888877644
No 40
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=98.31 E-value=1.2e-05 Score=75.65 Aligned_cols=141 Identities=16% Similarity=0.160 Sum_probs=76.6
Q ss_pred EEEeccCCCCCCCC--ChhHHHHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCCccCCCCcccccccchhhhhcC-CC
Q 014373 193 AWELMNEPRCTSDP--SGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQ-TL 269 (426)
Q Consensus 193 ~weL~NEp~~~~~~--~~~~~~~w~~~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~np~~y~~~~g~d~~~~~~-~~ 269 (426)
.+..+|||+..... +.+.+.+...++.+.+|. ++..|......+-+...+. ...| -.+|...+. ..
T Consensus 68 ~ll~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~--~~~~l~sPa~~~~~~~~~~-----g~~W----l~~F~~~~~~~~ 136 (239)
T PF11790_consen 68 HLLGFNEPDLPGQSNMSPEEAAALWKQYMNPLRS--PGVKLGSPAVAFTNGGTPG-----GLDW----LSQFLSACARGC 136 (239)
T ss_pred ceeeecCCCCCCCCCCCHHHHHHHHHHHHhHhhc--CCcEEECCeecccCCCCCC-----ccHH----HHHHHHhcccCC
Confidence 35678999986522 334444444555556663 4443321111011100000 0002 134444444 45
Q ss_pred CcceEEEeccCCCccCCCChhHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHhhh
Q 014373 270 GVDFASVHIYADSWISQTISDAHLQFTKSWMEAHIEDAEKYLRMPVLFTEFGVSAKDTGYNTSFRDTLISSVYKTLLNST 349 (426)
Q Consensus 270 ~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~l~~~~~~a~~~~~kPv~v~EfG~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 349 (426)
.+||+++|.|... ... +..+++.+.+..+|||+|||||........+.+.+..|+++++..+.+
T Consensus 137 ~~D~iavH~Y~~~----------~~~----~~~~i~~~~~~~~kPIWITEf~~~~~~~~~~~~~~~~fl~~~~~~ld~-- 200 (239)
T PF11790_consen 137 RVDFIAVHWYGGD----------ADD----FKDYIDDLHNRYGKPIWITEFGCWNGGSQGSDEQQASFLRQALPWLDS-- 200 (239)
T ss_pred CccEEEEecCCcC----------HHH----HHHHHHHHHHHhCCCEEEEeecccCCCCCCCHHHHHHHHHHHHHHHhc--
Confidence 8999999999322 112 333444444447899999999987643334677888998887765543
Q ss_pred hcCCCcccccccc
Q 014373 350 KKGGSGAGSLLWQ 362 (426)
Q Consensus 350 ~~~~~~~G~~~W~ 362 (426)
...+.++.+..
T Consensus 201 --~~~VeryawF~ 211 (239)
T PF11790_consen 201 --QPYVERYAWFG 211 (239)
T ss_pred --CCCeeEEEecc
Confidence 34355566655
No 41
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=97.91 E-value=0.0032 Score=62.29 Aligned_cols=148 Identities=16% Similarity=0.198 Sum_probs=73.2
Q ss_pred HHCCCCEEEecccc---C-C-------Ccc---cccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhh
Q 014373 73 SSAGLTVCRTWAFN---D-G-------QWR---ALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQ 138 (426)
Q Consensus 73 ~~~G~N~vRi~~~~---~-~-------~~~---~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~ 138 (426)
+.+|+|.+|.-+-. + + .|+ .+.+..|.||-+.=..=..++.+|+++|+..++-+.+.. |
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aFSNSP------P- 129 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADGSYDWDADAGQRWFLKAAKERGVNIFEAFSNSP------P- 129 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS-B-TTSSHHHHHHHHHHHHTT---EEEE-SSS--------
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEeecCC------C-
Confidence 57999999995421 0 0 121 233445666532222334688999999999888664421 1
Q ss_pred HHHhhhhcCCCCCCCC-CcCCCHHHHHHHHHHHHHHHhcccccccccccCCC-cEEEEEeccCCCCCCC--------CCh
Q 014373 139 YVKWGKAAGLNLTSDD-EFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDP-TIFAWELMNEPRCTSD--------PSG 208 (426)
Q Consensus 139 y~~W~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p-~I~~weL~NEp~~~~~--------~~~ 208 (426)
-|....|....... .---.++..+.|.+|+..++++ |+.+. .|-..+.+|||...-. .+.
T Consensus 130 --~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~--------~~~~GI~f~~IsP~NEP~~~W~~~~QEG~~~~~ 199 (384)
T PF14587_consen 130 --WWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKH--------YKKWGINFDYISPFNEPQWNWAGGSQEGCHFTN 199 (384)
T ss_dssp --GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHH--------HHCTT--EEEEE--S-TTS-GG--SS-B----H
T ss_pred --HHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHH--------HHhcCCccceeCCcCCCCCCCCCCCcCCCCCCH
Confidence 12222221110000 0011356789999999999999 64442 4566889999986421 123
Q ss_pred hHHHHHHHHHHHHHHhcCCCCEEEecccc
Q 014373 209 DTLQSWIQEMAVYVKSIDAKHLVEIGLEG 237 (426)
Q Consensus 209 ~~~~~w~~~~~~~Ir~~dp~~lV~~g~~g 237 (426)
+...+.++.+.+.+++...+..|+++.++
T Consensus 200 ~e~a~vI~~L~~~L~~~GL~t~I~~~Ea~ 228 (384)
T PF14587_consen 200 EEQADVIRALDKALKKRGLSTKISACEAG 228 (384)
T ss_dssp HHHHHHHHHHHHHHHHHT-S-EEEEEEES
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEecchh
Confidence 56778888999999988888888887544
No 42
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.57 E-value=0.0045 Score=60.55 Aligned_cols=208 Identities=17% Similarity=0.282 Sum_probs=111.8
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCC--cc-cccCC----CCC-CChHHHHHHHHHHHHHHHcCCEEEEec--CCCc
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQ--WR-ALQTS----PSV-YDEEVFKALDFVISEAKKYKIRLILSL--TNNW 130 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~--~~-~~~~~----~g~-~~e~~l~~lD~~l~~a~~~Gi~vil~l--~~~w 130 (426)
+++.+++.|+.|+++|+|+|=+-+...+. |+ .+.|. .|. .....++-|..+|++|+++||.|.-=+ ....
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~ 96 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNA 96 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCC
Confidence 57899999999999999987663322221 11 11111 111 112247789999999999999996443 1000
Q ss_pred CCCCC-hhhHHHhhh--hcCCCCC----CCCCcCC---CHHHHHHHHHHHHHHHhcccccccccccCC---CcEEEEEe-
Q 014373 131 DAYGG-KAQYVKWGK--AAGLNLT----SDDEFFS---HTTLKSYYKAHVKTVLNRVNTFTNLTYKND---PTIFAWEL- 196 (426)
Q Consensus 131 ~~~gg-~~~y~~W~~--~~g~~~~----~~~~~~~---~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~---p~I~~weL- 196 (426)
...+. ....+.|.. ..|.... .....|- .|++++...+.+++||++-. +.|+++-+. |...+++.
T Consensus 97 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd-vDGIhlDdy~yp~~~~g~~~~ 175 (311)
T PF02638_consen 97 PDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD-VDGIHLDDYFYPPPSFGYDFP 175 (311)
T ss_pred CchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC-CCeEEecccccccccCCCCCc
Confidence 01010 012223421 1111000 1222233 47999999999999999942 344443321 11111100
Q ss_pred ---------ccCCCCC-CC-----CChhHHHHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCCccCCCCcccccccch
Q 014373 197 ---------MNEPRCT-SD-----PSGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTD 261 (426)
Q Consensus 197 ---------~NEp~~~-~~-----~~~~~~~~w~~~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~np~~y~~~~g~d 261 (426)
+..|... .+ .-.+.+..+++++.+.||+++|+..+++...|.++.+... .| +|
T Consensus 176 ~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~kP~v~~sisp~g~~~~~y~~-------~~-----qD 243 (311)
T PF02638_consen 176 DVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIKPWVKFSISPFGIWNSAYDD-------YY-----QD 243 (311)
T ss_pred cHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeecchhhhhhh-------ee-----cc
Confidence 0001000 00 0124577788899999999999999988765555211110 01 22
Q ss_pred hhhhcCCCCcceEEEeccCC
Q 014373 262 FIRNHQTLGVDFASVHIYAD 281 (426)
Q Consensus 262 ~~~~~~~~~iD~~s~H~Y~~ 281 (426)
+..=+...-||++..-.|-.
T Consensus 244 ~~~W~~~G~iD~i~Pq~Y~~ 263 (311)
T PF02638_consen 244 WRNWLKEGYIDYIVPQIYWS 263 (311)
T ss_pred HHHHHhcCCccEEEeeeccc
Confidence 22212346799999999943
No 43
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=97.53 E-value=0.0034 Score=60.67 Aligned_cols=224 Identities=18% Similarity=0.164 Sum_probs=113.1
Q ss_pred HCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhHHHhhhh----cCCC
Q 014373 74 SAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKA----AGLN 149 (426)
Q Consensus 74 ~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~----~g~~ 149 (426)
++|+..+|+.+-+..-| + .|.+|.. .+.|- .-.-+..+|++|+-+. |.... |-+. .|+.
T Consensus 77 ~lg~si~Rv~I~~ndfs--l---~g~~d~w-~kels-~Ak~~in~g~ivfASP---WspPa-------~Mktt~~~ngg~ 139 (433)
T COG5520 77 QLGFSILRVPIDSNDFS--L---GGSADNW-YKELS-TAKSAINPGMIVFASP---WSPPA-------SMKTTNNRNGGN 139 (433)
T ss_pred ccCceEEEEEecccccc--c---CCCcchh-hhhcc-cchhhcCCCcEEEecC---CCCch-------hhhhccCcCCcc
Confidence 68999999976322111 1 1222211 11111 1122678999998876 43311 2111 1110
Q ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCC-CcEEEEEeccCCCCCCC-----CChhHHHHHHHHHHHHHH
Q 014373 150 LTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKND-PTIFAWELMNEPRCTSD-----PSGDTLQSWIQEMAVYVK 223 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~-p~I~~weL~NEp~~~~~-----~~~~~~~~w~~~~~~~Ir 223 (426)
... --++.-..|.+++...|.. ++++ -.+-+..+.|||..... +..+...++ |.++++
T Consensus 140 ---~g~--Lk~e~Ya~yA~~l~~fv~~--------m~~nGvnlyalSVQNEPd~~p~~d~~~wtpQe~~rF---~~qyl~ 203 (433)
T COG5520 140 ---AGR--LKYEKYADYADYLNDFVLE--------MKNNGVNLYALSVQNEPDYAPTYDWCWWTPQEELRF---MRQYLA 203 (433)
T ss_pred ---ccc--cchhHhHHHHHHHHHHHHH--------HHhCCCceeEEeeccCCcccCCCCcccccHHHHHHH---HHHhhh
Confidence 000 0234556677777777777 7776 35778899999987632 123444444 445555
Q ss_pred hcCCCCEEEeccccccCCCCCCCccCCCCcccccccchhhhhcCCCCcceEEEeccCCCccCCCChhHHHHHHHHHHHHH
Q 014373 224 SIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDFASVHIYADSWISQTISDAHLQFTKSWMEAH 303 (426)
Q Consensus 224 ~~dp~~lV~~g~~g~~~~~~~~~~~~np~~y~~~~g~d~~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~l~~~ 303 (426)
++....-|.+-..-.+....+ .|. +.......++|++++|.|...-.. ....+
T Consensus 204 si~~~~rV~~pes~~~~~~~~-----dp~---------lnDp~a~a~~~ilg~H~Ygg~v~~----------~p~~l--- 256 (433)
T COG5520 204 SINAEMRVIIPESFKDLPNMS-----DPI---------LNDPKALANMDILGTHLYGGQVSD----------QPYPL--- 256 (433)
T ss_pred hhccccEEecchhcccccccc-----ccc---------ccCHhHhcccceeEeeeccccccc----------chhhH---
Confidence 555444443321111111111 110 001123568999999999764211 01111
Q ss_pred HHHHHH-hCCCcEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHhhhhcCCCcccccccccCC
Q 014373 304 IEDAEK-YLRMPVLFTEFGVSAKDTGYNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFP 365 (426)
Q Consensus 304 ~~~a~~-~~~kPv~v~EfG~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~ 365 (426)
++. -.+|-|+++|.-....++++. .| +... +...+...+..++ ..|+.+|-+..
T Consensus 257 ---ak~~~~gKdlwmte~y~~esd~~s~--dr-~~~~-~~~hi~~gm~~gg-~~ayv~W~i~~ 311 (433)
T COG5520 257 ---AKQKPAGKDLWMTECYPPESDPNSA--DR-EALH-VALHIHIGMTEGG-FQAYVWWNIRL 311 (433)
T ss_pred ---hhCCCcCCceEEeecccCCCCCCcc--hH-HHHH-HHHHHHhhccccC-ccEEEEEEEee
Confidence 222 148999999997776665432 23 2222 2233333344444 78899998853
No 44
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=97.17 E-value=0.00077 Score=65.48 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEecC
Q 014373 105 FKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 105 l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
+.+.|.+.+-|++-|++||+.|.
T Consensus 108 ~~rwd~l~~F~~~tG~~liFgLN 130 (319)
T PF03662_consen 108 MSRWDELNNFAQKTGLKLIFGLN 130 (319)
T ss_dssp ----HHHHHHHHHHT-EEEEEE-
T ss_pred hhHHHHHHHHHHHhCCEEEEEec
Confidence 45788999999999999999994
No 45
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=97.05 E-value=0.017 Score=59.92 Aligned_cols=244 Identities=17% Similarity=0.183 Sum_probs=119.9
Q ss_pred HHHHHHHHHHCCCCEEEecccc----CCCcccccCCCC-----CCC--hHHHHHHHHHHHHHHHc--CCEEEEecCCCcC
Q 014373 65 VSELFHQASSAGLTVCRTWAFN----DGQWRALQTSPS-----VYD--EEVFKALDFVISEAKKY--KIRLILSLTNNWD 131 (426)
Q Consensus 65 ~~~dl~~~~~~G~N~vRi~~~~----~~~~~~~~~~~g-----~~~--e~~l~~lD~~l~~a~~~--Gi~vil~l~~~w~ 131 (426)
++..|. =..+|++.+|+.+-+ ...|. +...|+ .|+ .+-.+.+--+|..|.+. +|+++.+. |.
T Consensus 103 l~~~F~-~~G~g~s~~R~pIgssDfs~~~Yt-y~d~~~D~~l~~Fs~~~~d~~~~ip~ik~a~~~~~~lki~aSp---WS 177 (496)
T PF02055_consen 103 LRSLFS-EDGIGYSLLRVPIGSSDFSTRPYT-YDDVPGDFNLSNFSIAREDKKYKIPLIKEALAINPNLKIFASP---WS 177 (496)
T ss_dssp HHHHHS-TTTT---EEEEEES--SSSSS----ST-STTHTTTTT---HHHHHTTHHHHHHHHHHHHTT-EEEEEE---S-
T ss_pred HHHHhh-cCCceEEEEEeeccCcCCcCCccc-ccCCCCCCccccCCccccchhhHHHHHHHHHHhCCCcEEEEec---CC
Confidence 444454 357999999997632 11121 111222 121 11111112345544443 48888875 53
Q ss_pred CCCChhhHHHhhhhcCCCCCCCCCcCC---CHHHHHHHHHHHHHHHhcccccccccccCCC-cEEEEEeccCCCCCC---
Q 014373 132 AYGGKAQYVKWGKAAGLNLTSDDEFFS---HTTLKSYYKAHVKTVLNRVNTFTNLTYKNDP-TIFAWELMNEPRCTS--- 204 (426)
Q Consensus 132 ~~gg~~~y~~W~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p-~I~~weL~NEp~~~~--- 204 (426)
. +.|.+..+.-. ...... .++..+.|.+|+.+.++. |+.+. .|-+..+.|||....
T Consensus 178 p-------P~WMKtn~~~~--g~g~l~g~~~~~y~~~yA~Y~vkfi~a--------Y~~~GI~i~aiT~QNEP~~~~~~~ 240 (496)
T PF02055_consen 178 P-------PAWMKTNGSMN--GGGSLKGSLGDEYYQAYADYFVKFIQA--------YKKEGIPIWAITPQNEPDNGSDPN 240 (496)
T ss_dssp ---------GGGBTTSSSC--SS-BBSCGTTSHHHHHHHHHHHHHHHH--------HHCTT--ESEEESSSSCCGGGSTT
T ss_pred C-------CHHHccCCcCc--CCCccCCCCCchhHHHHHHHHHHHHHH--------HHHCCCCeEEEeccCCCCCCCCCC
Confidence 3 24654432100 001111 246788899999999998 88773 578888999998521
Q ss_pred -C-----CChhHHHHHHHH-HHHHHHhcCC--CCEEEeccccccCCCCCCCccCCCCcccccccchhhhhcCCCCcceEE
Q 014373 205 -D-----PSGDTLQSWIQE-MAVYVKSIDA--KHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDFAS 275 (426)
Q Consensus 205 -~-----~~~~~~~~w~~~-~~~~Ir~~dp--~~lV~~g~~g~~~~~~~~~~~~np~~y~~~~g~d~~~~~~~~~iD~~s 275 (426)
. .+.+....|++. +...+++..+ +..|.+..+.... .|. |... -+....+.+.||-++
T Consensus 241 ~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~---------~~~-~~~~---il~d~~A~~yv~GiA 307 (496)
T PF02055_consen 241 YPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDN---------LPD-YADT---ILNDPEAAKYVDGIA 307 (496)
T ss_dssp -SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGG---------TTH-HHHH---HHTSHHHHTTEEEEE
T ss_pred CCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcc---------cch-hhhh---hhcChhhHhheeEEE
Confidence 1 135667888876 8889998776 4444443221110 111 2100 000011245799999
Q ss_pred EeccCCCccCCCChhHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCCC----CChHHHH-HHHHHHHHHHHhhhh
Q 014373 276 VHIYADSWISQTISDAHLQFTKSWMEAHIEDAEKYLRMPVLFTEFGVSAKDTG----YNTSFRD-TLISSVYKTLLNSTK 350 (426)
Q Consensus 276 ~H~Y~~~w~~~~~~~~~~~~~~~~l~~~~~~a~~~~~kPv~v~EfG~~~~~~~----~~~~~r~-~~~~~~~~~~~~~~~ 350 (426)
+|.|.+.-. . .-|.. ..++.++|.++.+|-.......+ ...-.|. .|... +...+.
T Consensus 308 ~HwY~g~~~-----~-------~~l~~---~h~~~P~k~l~~TE~~~g~~~~~~~~~~g~w~~~~~y~~~----ii~~ln 368 (496)
T PF02055_consen 308 FHWYGGDPS-----P-------QALDQ---VHNKFPDKFLLFTEACCGSWNWDTSVDLGSWDRAERYAHD----IIGDLN 368 (496)
T ss_dssp EEETTCS-H-----C-------HHHHH---HHHHSTTSEEEEEEEESS-STTS-SS-TTHHHHHHHHHHH----HHHHHH
T ss_pred EECCCCCch-----h-------hHHHH---HHHHCCCcEEEeeccccCCCCcccccccccHHHHHHHHHH----HHHHHH
Confidence 999965210 0 01111 11223799999999865443211 1111232 23322 333444
Q ss_pred cCCCcccccccccC
Q 014373 351 KGGSGAGSLLWQLF 364 (426)
Q Consensus 351 ~~~~~~G~~~W~~~ 364 (426)
.+ ..||+.|.+.
T Consensus 369 n~--~~gw~~WNl~ 380 (496)
T PF02055_consen 369 NW--VSGWIDWNLA 380 (496)
T ss_dssp TT--EEEEEEEESE
T ss_pred hh--ceeeeeeeee
Confidence 43 7899999985
No 46
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=97.00 E-value=0.15 Score=49.66 Aligned_cols=279 Identities=14% Similarity=0.163 Sum_probs=137.0
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCC---ccc---ccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCC
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQ---WRA---LQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYG 134 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~---~~~---~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~g 134 (426)
+.+.+++.|+.+++.|+|+|=|=+-.+.+ |+. .....|.. ......+..+++.++++||++|--+..+-+..-
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~-~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~l 89 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAV-KPYIKDLKALVKKLKEHGIYPIARIVVFKDPVL 89 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccc-cccccCHHHHHHHHHHCCCEEEEEEEEecChHH
Confidence 45789999999999999999884432221 110 00111211 112457889999999999999877643221110
Q ss_pred ChhhHHHhhh--hcCCCCC-CCCCcCCC---HHHHHHHHHHHHHHHhccccccccccc--CCCc--EEEEEeccCCCCCC
Q 014373 135 GKAQYVKWGK--AAGLNLT-SDDEFFSH---TTLKSYYKAHVKTVLNRVNTFTNLTYK--NDPT--IFAWELMNEPRCTS 204 (426)
Q Consensus 135 g~~~y~~W~~--~~g~~~~-~~~~~~~~---~~~~~~~~~~~~~iv~r~n~~tg~~y~--~~p~--I~~weL~NEp~~~~ 204 (426)
. ...+.|+- ..|.... ....-|.| +++++...+..+++++. .|..+.|- .-|+ ...--...++....
T Consensus 90 a-~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~--GFdEIqfDYIRFP~~~~~~~l~y~~~~~~~ 166 (316)
T PF13200_consen 90 A-EAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKL--GFDEIQFDYIRFPDEGRLSGLDYSENDTEE 166 (316)
T ss_pred h-hhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHc--CCCEEEeeeeecCCCCcccccccCCCCCcc
Confidence 0 01123322 1111111 11223555 46777777777777764 33332221 1122 00000001111100
Q ss_pred CCChhHHHHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCCccCCCCcccccccchhhhhcCCCCcceEEEeccCCCcc
Q 014373 205 DPSGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDFASVHIYADSWI 284 (426)
Q Consensus 205 ~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~np~~y~~~~g~d~~~~~~~~~iD~~s~H~Y~~~w~ 284 (426)
.-.+.+..+++.+.+.++..+ ..|++..-|.- .... +. ..-|+++... .+.+|+++.=.||.+|.
T Consensus 167 -~r~~aI~~Fl~~a~~~l~~~~--v~vSaDVfG~~-~~~~-----~~----~~iGQ~~~~~--a~~vD~IsPMiYPSh~~ 231 (316)
T PF13200_consen 167 -SRVDAITDFLAYAREELHPYG--VPVSADVFGYV-AWSP-----DD----MGIGQDFEKI--AEYVDYISPMIYPSHYG 231 (316)
T ss_pred -hHHHHHHHHHHHHHHHHhHcC--CCEEEEecccc-cccC-----CC----CCcCCCHHHH--hhhCCEEEecccccccC
Confidence 012568888888888888764 45655432211 1000 01 1246666553 67899999999999986
Q ss_pred CCCC-----hhHHHHHHHHHHHHHHHHHHHhCCCcE---EEEecCCCCCCCCCChHHHHHHHHHHHHHHHhhhhcCCCcc
Q 014373 285 SQTI-----SDAHLQFTKSWMEAHIEDAEKYLRMPV---LFTEFGVSAKDTGYNTSFRDTLISSVYKTLLNSTKKGGSGA 356 (426)
Q Consensus 285 ~~~~-----~~~~~~~~~~~l~~~~~~a~~~~~kPv---~v~EfG~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 356 (426)
.+.. .....+.....+....+......++++ +|.-|.+..... .-...-..+++....++. +.+ ..
T Consensus 232 ~g~~g~~~P~~~PY~~v~~~~~~~~~~~~~~~~~~~~RPWlQ~Ft~~~~~~-~~~~Yg~~ev~aQI~A~~----d~g-~~ 305 (316)
T PF13200_consen 232 PGFFGIDKPDLEPYEIVYRSLKRAKERLRGLEGPAIIRPWLQDFTASWLGK-NYKEYGPEEVRAQIQALK----DAG-IE 305 (316)
T ss_pred cccCCCCCcccChHHHHHHHHHHHHHHhhcCCCCCeEeccccccccccccc-CccccCHHHHHHHHHHHH----HcC-CC
Confidence 5311 122344444445443332222112343 466665553321 001111222333233333 333 78
Q ss_pred cccccccC
Q 014373 357 GSLLWQLF 364 (426)
Q Consensus 357 G~~~W~~~ 364 (426)
|+++|.-.
T Consensus 306 ~~llWna~ 313 (316)
T PF13200_consen 306 GWLLWNAS 313 (316)
T ss_pred eEEEECCC
Confidence 99999753
No 47
>PRK10785 maltodextrin glucosidase; Provisional
Probab=96.70 E-value=0.024 Score=60.55 Aligned_cols=163 Identities=15% Similarity=0.171 Sum_probs=84.9
Q ss_pred ChHHHHHHHHHHHHCCCCEEEec-cccCCCcccccCCC-CCCChH--HHHHHHHHHHHHHHcCCEEEEecCC-CcCCC--
Q 014373 61 TRGKVSELFHQASSAGLTVCRTW-AFNDGQWRALQTSP-SVYDEE--VFKALDFVISEAKKYKIRLILSLTN-NWDAY-- 133 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~-~~~~~~~~~~~~~~-g~~~e~--~l~~lD~~l~~a~~~Gi~vil~l~~-~w~~~-- 133 (426)
+-.-+.+.|+.|+++|+|+|=+- +|.....+.+.+.. -.+|+. ..+.|.+++++|+++||+||+++.- +-...
T Consensus 177 Dl~GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~~~~ 256 (598)
T PRK10785 177 DLDGISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGDSHP 256 (598)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCCCCH
Confidence 45778899999999999999883 23211111110000 011211 2567889999999999999999743 21110
Q ss_pred -------C--C-----hhhHHHhhhh--cCCC-----CCCCCCc-CCCHHHHHHHHHHHHHHHhcccccccccccCCC-c
Q 014373 134 -------G--G-----KAQYVKWGKA--AGLN-----LTSDDEF-FSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDP-T 190 (426)
Q Consensus 134 -------g--g-----~~~y~~W~~~--~g~~-----~~~~~~~-~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p-~ 190 (426)
| | .+.|.+|..- .|.. ...-.++ +.+|++++.+.+-...++++ |-+.| .
T Consensus 257 ~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~--------Wl~~~~g 328 (598)
T PRK10785 257 WFDRHNRGTGGACHHPDSPWRDWYSFSDDGRALDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRH--------WLKAPYN 328 (598)
T ss_pred HHHHhhccccccccCCCCCcceeeEECCCCCcCCcCCCCcCccccCCCHHHHHHHHhhhhHHHHH--------hhcCCCC
Confidence 0 0 0011122100 0000 0000111 45688877776543345554 33321 2
Q ss_pred EEEE--EeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCEEEec
Q 014373 191 IFAW--ELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIG 234 (426)
Q Consensus 191 I~~w--eL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~g 234 (426)
|=|| +..+|..-.. ....-..+++++.+.+|+..|+..+ +|
T Consensus 329 iDG~RlDva~~v~~~~--~~~~~~~f~~~~~~~vk~~~pd~~l-ig 371 (598)
T PRK10785 329 IDGWRLDVVHMLGEGG--GARNNLQHVAGITQAAKEENPEAYV-LG 371 (598)
T ss_pred CcEEEEecHhHhcccc--CccccHHHHHHHHHHHHhhCCCeEE-EE
Confidence 3333 4455542111 0112346788999999999998755 45
No 48
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.26 E-value=0.13 Score=56.33 Aligned_cols=157 Identities=12% Similarity=0.218 Sum_probs=83.4
Q ss_pred hHHHHHH-HHHHHHCCCCEEEeccccC----CCc--c---cccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCC-c
Q 014373 62 RGKVSEL-FHQASSAGLTVCRTWAFND----GQW--R---ALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNN-W 130 (426)
Q Consensus 62 ~~~~~~d-l~~~~~~G~N~vRi~~~~~----~~~--~---~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~-w 130 (426)
-..+.+. |+.++++|+|+|=+-...+ ..| . .+.+.| .|. ..+.|.++|++|+++||+||+++.-+ .
T Consensus 264 ~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~-~~G--t~~dfk~lV~~~H~~Gi~VilD~V~NH~ 340 (726)
T PRK05402 264 YRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTS-RFG--TPDDFRYFVDACHQAGIGVILDWVPAHF 340 (726)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCc-ccC--CHHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence 3445555 5999999999998843211 111 1 011111 111 15678899999999999999997432 2
Q ss_pred CC-------CCChhhHHHhhhh--cCC--CCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEe-cc
Q 014373 131 DA-------YGGKAQYVKWGKA--AGL--NLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWEL-MN 198 (426)
Q Consensus 131 ~~-------~gg~~~y~~W~~~--~g~--~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL-~N 198 (426)
.. +.|.+.|. ... .|. ......-=+.+|++++.+.+-++..+++ |+=+. +-++. .+
T Consensus 341 ~~~~~~~~~~~~~~~y~--~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e--------~~iDG--~R~D~v~~ 408 (726)
T PRK05402 341 PKDAHGLARFDGTALYE--HADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEE--------FHIDG--LRVDAVAS 408 (726)
T ss_pred CCCccchhccCCCccee--ccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHH--------hCCcE--EEECCHHH
Confidence 11 11111110 000 000 0000000155789999999999998886 43221 00111 11
Q ss_pred C-------------CCCCCCCChhHHHHHHHHHHHHHHhcCCCCEEEec
Q 014373 199 E-------------PRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIG 234 (426)
Q Consensus 199 E-------------p~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~g 234 (426)
. |+............+++++.+.||+..|+.++ +|
T Consensus 409 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~p~~~l-ia 456 (726)
T PRK05402 409 MLYLDYSRKEGEWIPNIYGGRENLEAIDFLRELNAVVHEEFPGALT-IA 456 (726)
T ss_pred hhhccccccccccccccccCcCCHHHHHHHHHHHHHHHHHCCCeEE-EE
Confidence 1 11111011123567889999999999998654 44
No 49
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=96.23 E-value=0.13 Score=54.45 Aligned_cols=155 Identities=15% Similarity=0.201 Sum_probs=85.6
Q ss_pred CChHHHHHHHHHHHHCCCCEEEeccccC----CCc--c---cccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCC-
Q 014373 60 STRGKVSELFHQASSAGLTVCRTWAFND----GQW--R---ALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNN- 129 (426)
Q Consensus 60 ~~~~~~~~dl~~~~~~G~N~vRi~~~~~----~~~--~---~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~- 129 (426)
++-..+.+.|+.++++|+|+|=+....+ ..| . .+.+.+ .|. ..+.|.++|++|+++||+||+++.-+
T Consensus 108 G~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~-~~G--~~~e~k~lV~~aH~~Gi~VilD~V~NH 184 (542)
T TIGR02402 108 GTFDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN-AYG--GPDDLKALVDAAHGLGLGVILDVVYNH 184 (542)
T ss_pred CCHHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc-ccC--CHHHHHHHHHHHHHCCCEEEEEEccCC
Confidence 4566777889999999999999843211 011 1 111111 121 25678899999999999999997433
Q ss_pred cCCCCC-hhhHHHhhhhc-CCCCCCCCCcCCCH---HHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCCC
Q 014373 130 WDAYGG-KAQYVKWGKAA-GLNLTSDDEFFSHT---TLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTS 204 (426)
Q Consensus 130 w~~~gg-~~~y~~W~~~~-g~~~~~~~~~~~~~---~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~ 204 (426)
-...+. .+.|..|.... ..+....-+ +.++ .+++.+.+.++..++. |+=+. +=+++.....-
T Consensus 185 ~~~~~~~~~~~~~y~~~~~~~~wg~~~n-~~~~~~~~vr~~i~~~~~~W~~e--------~~iDG--fR~D~~~~~~~-- 251 (542)
T TIGR02402 185 FGPEGNYLPRYAPYFTDRYSTPWGAAIN-FDGPGSDEVRRYILDNALYWLRE--------YHFDG--LRLDAVHAIAD-- 251 (542)
T ss_pred CCCccccccccCccccCCCCCCCCCccc-cCCCcHHHHHHHHHHHHHHHHHH--------hCCcE--EEEeCHHHhcc--
Confidence 111110 11111121100 000001111 3456 8888888888888876 54321 11232222211
Q ss_pred CCChhHHHHHHHHHHHHHHhcCCC--CEEEec
Q 014373 205 DPSGDTLQSWIQEMAVYVKSIDAK--HLVEIG 234 (426)
Q Consensus 205 ~~~~~~~~~w~~~~~~~Ir~~dp~--~lV~~g 234 (426)
.....+++++.+.+|++.|+ +.+.+|
T Consensus 252 ----~~~~~~l~~~~~~~~~~~p~~~~~~li~ 279 (542)
T TIGR02402 252 ----TSAKHILEELAREVHELAAELRPVHLIA 279 (542)
T ss_pred ----ccHHHHHHHHHHHHHHHCCCCceEEEEE
Confidence 11246889999999999887 244455
No 50
>PLN02705 beta-amylase
Probab=96.13 E-value=0.058 Score=55.96 Aligned_cols=130 Identities=15% Similarity=0.317 Sum_probs=84.4
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCCcccccC-CCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChh--
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQT-SPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKA-- 137 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~-~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~-- 137 (426)
..+.++..|..||++|+.-|=+-+. |-.+|. .|++|| |..+.++++++++.|||+.+.|.-+ -+||.-
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVW----WGiVE~~~P~~Yd---WsgY~~L~~mvr~~GLKlqvVmSFH--qCGGNVGD 336 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCW----WGIVEGWNPQKYV---WSGYRELFNIIREFKLKLQVVMAFH--EYGGNASG 336 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeee----eeEeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEee--ccCCCCCC
Confidence 4688999999999999999888433 444554 588998 8899999999999999986665322 233320
Q ss_pred ----hHHHhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCCCCCChhHHHH
Q 014373 138 ----QYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQS 213 (426)
Q Consensus 138 ----~y~~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~~~~~~~~~ 213 (426)
..+.|....|. .+.+-||+|..- .+|... ++|-.-++|-..+...-+.+.+
T Consensus 337 ~~~IPLP~WV~e~g~--~nPDifftDr~G----------------------~rn~Ey-LSlg~D~~pvl~GRTplq~Y~D 391 (681)
T PLN02705 337 NVMISLPQWVLEIGK--DNQDIFFTDREG----------------------RRNTEC-LSWSIDKERVLKGRTGIEVYFD 391 (681)
T ss_pred cccccCCHHHHHhcc--cCCCceeecCCC----------------------Ccccce-eeeecCcccccCCCCHHHHHHH
Confidence 13456554332 123457776432 223333 5699999997654433355666
Q ss_pred HHHHHHHHHHh
Q 014373 214 WIQEMAVYVKS 224 (426)
Q Consensus 214 w~~~~~~~Ir~ 224 (426)
|++........
T Consensus 392 FM~SFr~~F~~ 402 (681)
T PLN02705 392 FMRSFRSEFDD 402 (681)
T ss_pred HHHHHHHHHHH
Confidence 66655555554
No 51
>PLN02161 beta-amylase
Probab=96.10 E-value=0.08 Score=53.99 Aligned_cols=131 Identities=11% Similarity=0.253 Sum_probs=83.0
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCCcccccC-CCCCCChHHHHHHHHHHHHHHHcCCEEEEec--CCCcCCCC---
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQT-SPSVYDEEVFKALDFVISEAKKYKIRLILSL--TNNWDAYG--- 134 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~-~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l--~~~w~~~g--- 134 (426)
....++..|..+|.+|+.-|=+-+. |-.+|. .|++|| |..+.++++++++.|+|+.+.| |.--+..|
T Consensus 115 ~~~al~~~L~~LK~~GVdGVmvDVW----WGiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~ 187 (531)
T PLN02161 115 RLKALTVSLKALKLAGVHGIAVEVW----WGIVERFSPLEFK---WSLYEELFRLISEAGLKLHVALCFHSNMHLFGGKG 187 (531)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEee----eeeeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcc
Confidence 4578999999999999999888433 444554 688999 8899999999999999996665 43111111
Q ss_pred ChhhHHHhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCCCCCChhHHHHH
Q 014373 135 GKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSW 214 (426)
Q Consensus 135 g~~~y~~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~~~~~~~~~w 214 (426)
+.+ .+.|....|. .+.+-||+|..- .+|. --++|-+-|+|-..+...-+.+.+|
T Consensus 188 ~Ip-LP~WV~~~g~--~~pDi~ftDr~G----------------------~rn~-EyLSlg~D~~pvl~GRTplq~Y~Df 241 (531)
T PLN02161 188 GIS-LPLWIREIGD--VNKDIYYRDKNG----------------------FSNN-DYLTLGVDQLPLFGGRTAVQCYEDF 241 (531)
T ss_pred Ccc-CCHHHHhhhc--cCCCceEEcCCC----------------------Cccc-ceeeeecccchhcCCCCHHHHHHHH
Confidence 122 3456544332 123457776432 2222 3467889999987654323455556
Q ss_pred HHHHHHHHHh
Q 014373 215 IQEMAVYVKS 224 (426)
Q Consensus 215 ~~~~~~~Ir~ 224 (426)
++......+.
T Consensus 242 m~SFr~~F~~ 251 (531)
T PLN02161 242 MLSFSTKFEP 251 (531)
T ss_pred HHHHHHHHHH
Confidence 5554444443
No 52
>PLN02905 beta-amylase
Probab=96.08 E-value=0.066 Score=55.73 Aligned_cols=130 Identities=13% Similarity=0.314 Sum_probs=84.4
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCCcccccC-CCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChh--
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQT-SPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKA-- 137 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~-~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~-- 137 (426)
+...++..|..||++|+.-|=+-+. |-.++. .|++|| |..+.++++++++.|||+.+.|.-| -+||.-
T Consensus 284 ~~~al~a~L~aLK~aGVdGVmvDVW----WGiVE~~gP~~Yd---WsgY~~L~~mvr~~GLKlqvVMSFH--qCGGNVGD 354 (702)
T PLN02905 284 DPDGLLKQLRILKSINVDGVKVDCW----WGIVEAHAPQEYN---WNGYKRLFQMVRELKLKLQVVMSFH--ECGGNVGD 354 (702)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeee----eeeeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEec--ccCCCCCC
Confidence 4678999999999999999888433 444554 688998 8899999999999999997766322 234420
Q ss_pred ----hHHHhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCCCCCChhHHHH
Q 014373 138 ----QYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQS 213 (426)
Q Consensus 138 ----~y~~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~~~~~~~~~ 213 (426)
..+.|....|. .+.+-||+|..- .+|... ++|-.-|+|-..+...-+.+.+
T Consensus 355 ~~~IPLP~WV~e~g~--~nPDifftDrsG----------------------~rn~Ey-LSlg~D~~pvl~GRTplq~Y~D 409 (702)
T PLN02905 355 DVCIPLPHWVAEIGR--SNPDIFFTDREG----------------------RRNPEC-LSWGIDKERILRGRTALEVYFD 409 (702)
T ss_pred cccccCCHHHHHhhh--cCCCceEecCCC----------------------CccCce-eeeecccccccCCCCHHHHHHH
Confidence 13456543321 123456776432 223334 5599999997765443355666
Q ss_pred HHHHHHHHHHh
Q 014373 214 WIQEMAVYVKS 224 (426)
Q Consensus 214 w~~~~~~~Ir~ 224 (426)
|++........
T Consensus 410 FM~SFr~~F~~ 420 (702)
T PLN02905 410 YMRSFRVEFDE 420 (702)
T ss_pred HHHHHHHHHHH
Confidence 66655555554
No 53
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=96.06 E-value=0.18 Score=49.09 Aligned_cols=158 Identities=10% Similarity=0.066 Sum_probs=92.2
Q ss_pred CChHHHHHHHHHHHHCCCCEEEeccccC---CCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCCh
Q 014373 60 STRGKVSELFHQASSAGLTVCRTWAFND---GQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGK 136 (426)
Q Consensus 60 ~~~~~~~~dl~~~~~~G~N~vRi~~~~~---~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~ 136 (426)
.+.+.+.+.++.|+.+|+|.+-++.-.. ...+.+....|.|.. +.+.++++.|+++||.||..+.. .|.+
T Consensus 14 ~~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~---~ei~ei~~yA~~~gI~vIPeid~----pGH~ 86 (301)
T cd06565 14 PKVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTK---EEIREIDDYAAELGIEVIPLIQT----LGHL 86 (301)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCH---HHHHHHHHHHHHcCCEEEecCCC----HHHH
Confidence 3568999999999999999999854211 112223233566774 45567889999999999998732 2433
Q ss_pred hhHHHhhhhcCC---CCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCC---CCCChhH
Q 014373 137 AQYVKWGKAAGL---NLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCT---SDPSGDT 210 (426)
Q Consensus 137 ~~y~~W~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~---~~~~~~~ 210 (426)
.....|...... +.....---++|++.+..++.++++++-.. -.-.+.+.|.. ++++--+.+. .....+.
T Consensus 87 ~~~l~~~~~~~l~~~~~~~~~l~~~~~~t~~fi~~li~ev~~~f~-s~~~HIG~DE~---~~~g~~~~~~~~~~~~~~~l 162 (301)
T cd06565 87 EFILKHPEFRHLREVDDPPQTLCPGEPKTYDFIEEMIRQVLELHP-SKYIHIGMDEA---YDLGRGRSLRKHGNLGRGEL 162 (301)
T ss_pred HHHHhCcccccccccCCCCCccCCCChhHHHHHHHHHHHHHHhCC-CCeEEECCCcc---cccCCCHHHHHhcCCCHHHH
Confidence 332222110000 000011124578899999999999998621 11122333332 2222111110 0112356
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 014373 211 LQSWIQEMAVYVKSIDAK 228 (426)
Q Consensus 211 ~~~w~~~~~~~Ir~~dp~ 228 (426)
+..+++++.+.|++..+.
T Consensus 163 ~~~~~~~v~~~v~~~g~~ 180 (301)
T cd06565 163 YLEHLKKVLKIIKKRGPK 180 (301)
T ss_pred HHHHHHHHHHHHHHcCCE
Confidence 788999999999998873
No 54
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=95.92 E-value=0.21 Score=53.61 Aligned_cols=167 Identities=8% Similarity=0.109 Sum_probs=86.5
Q ss_pred ChHHHHHH-HHHHHHCCCCEEEec-cccC---CCc--c---cccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCc
Q 014373 61 TRGKVSEL-FHQASSAGLTVCRTW-AFND---GQW--R---ALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNW 130 (426)
Q Consensus 61 ~~~~~~~d-l~~~~~~G~N~vRi~-~~~~---~~~--~---~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w 130 (426)
+...+.+. ++.++++|+|+|=+- ++.. ..| . .+.+.+ .|. ..+.|.++|++|+++||+||+++.-+.
T Consensus 154 ~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~-~~G--t~~dlk~lV~~~H~~Gi~VilD~V~NH 230 (613)
T TIGR01515 154 SYRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTS-RFG--TPDDFMYFVDACHQAGIGVILDWVPGH 230 (613)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCccccc-ccC--CHHHHHHHHHHHHHCCCEEEEEecccC
Confidence 34455555 599999999999983 2211 111 1 011111 121 145788999999999999999975331
Q ss_pred CC--------CCChhhHHHhhhhcCC--CCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCC
Q 014373 131 DA--------YGGKAQYVKWGKAAGL--NLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEP 200 (426)
Q Consensus 131 ~~--------~gg~~~y~~W~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp 200 (426)
.. +.+.+.|..-....+. +.....-=+.+|++++.+.+.++..++.. .+-|.++---+.++.+.-.+++
T Consensus 231 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey-~iDG~R~D~v~~~~~~~~~~~~ 309 (613)
T TIGR01515 231 FPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFY-HIDGLRVDAVASMLYLDYSRDE 309 (613)
T ss_pred cCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHh-CCcEEEEcCHHHhhhhcccccc
Confidence 11 1111111000000000 00000011357899999999999999861 0112222111233333333333
Q ss_pred CC-----CCCCChhHHHHHHHHHHHHHHhcCCCCEE
Q 014373 201 RC-----TSDPSGDTLQSWIQEMAVYVKSIDAKHLV 231 (426)
Q Consensus 201 ~~-----~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV 231 (426)
.- ...........+++++.+.||+..|+.++
T Consensus 310 ~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~l 345 (613)
T TIGR01515 310 GEWSPNEDGGRENLEAVDFLRKLNQTVYEAFPGVVT 345 (613)
T ss_pred ccccccccCCcCChHHHHHHHHHHHHHHHHCCCeEE
Confidence 21 00000123567889999999999998654
No 55
>PRK12313 glycogen branching enzyme; Provisional
Probab=95.92 E-value=0.33 Score=52.40 Aligned_cols=165 Identities=11% Similarity=0.167 Sum_probs=83.1
Q ss_pred hHHHHHH-HHHHHHCCCCEEEeccc-cC---CCc--c-----cccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC-
Q 014373 62 RGKVSEL-FHQASSAGLTVCRTWAF-ND---GQW--R-----ALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN- 128 (426)
Q Consensus 62 ~~~~~~d-l~~~~~~G~N~vRi~~~-~~---~~~--~-----~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~- 128 (426)
-..+.+. |+.++++|+|+|=+-.. .. ..| . .+.+.-|. .+.|.++|++|+++||+||+++.-
T Consensus 169 ~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt-----~~d~k~lv~~~H~~Gi~VilD~V~n 243 (633)
T PRK12313 169 YRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGT-----PEDFMYLVDALHQNGIGVILDWVPG 243 (633)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCC-----HHHHHHHHHHHHHCCCEEEEEECCC
Confidence 3444444 69999999999988432 11 111 1 11222232 567889999999999999999743
Q ss_pred CcCC-------CCChhhHHHhhhh-cCCC--CCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEec-
Q 014373 129 NWDA-------YGGKAQYVKWGKA-AGLN--LTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELM- 197 (426)
Q Consensus 129 ~w~~-------~gg~~~y~~W~~~-~g~~--~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~- 197 (426)
+... +.|.+.|. +... .+.. .....-=|.+|++++.+.+.++..++... +.|.++---+.++..+-.
T Consensus 244 H~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~-iDG~R~D~~~~~~~~d~~~ 321 (633)
T PRK12313 244 HFPKDDDGLAYFDGTPLYE-YQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH-LDGLRVDAVSNMLYLDYDE 321 (633)
T ss_pred CCCCCcccccccCCCccee-ecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC-CcEEEEcChhhhhhccccc
Confidence 2211 11100110 0000 0000 00001114579999999999999887610 111111100111110000
Q ss_pred -c--CCCCCCCCChhHHHHHHHHHHHHHHhcCCCCEEEec
Q 014373 198 -N--EPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIG 234 (426)
Q Consensus 198 -N--Ep~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~g 234 (426)
. .|+............+++++.+.||+..|+. +++|
T Consensus 322 ~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~-~lia 360 (633)
T PRK12313 322 EGEWTPNKYGGRENLEAIYFLQKLNEVVYLEHPDV-LMIA 360 (633)
T ss_pred ccCcCCcccCCCCCcHHHHHHHHHHHHHHHHCCCe-EEEE
Confidence 0 0111100001134678899999999999985 4455
No 56
>PLN02803 beta-amylase
Probab=95.91 E-value=0.079 Score=54.30 Aligned_cols=130 Identities=12% Similarity=0.211 Sum_probs=82.6
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCCcccccC-CCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChh--
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQT-SPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKA-- 137 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~-~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~-- 137 (426)
....++..|..||++|+.-|=+-+. |-.+|. .|++|| |..+.++++++++.|||+.+.|.-| -+||.-
T Consensus 105 ~~~~l~~~L~~LK~~GVdGVmvDVW----WGiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFH--qCGGNVGD 175 (548)
T PLN02803 105 KPRAMNASLMALRSAGVEGVMVDAW----WGLVEKDGPMKYN---WEGYAELVQMVQKHGLKLQVVMSFH--QCGGNVGD 175 (548)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEee----eeeeccCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEec--ccCCCCCC
Confidence 4578999999999999999888433 444554 589999 8999999999999999997666322 234420
Q ss_pred ----hHHHhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCCCCCChhHHHH
Q 014373 138 ----QYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQS 213 (426)
Q Consensus 138 ----~y~~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~~~~~~~~~ 213 (426)
..+.|....|. .+.+-||+|..- .+|. --+++-+-|+|-..+...-+.+.+
T Consensus 176 ~~~IpLP~WV~e~~~--~~pDi~ftDr~G----------------------~rn~-EyLSlg~D~~pvl~GRTplq~Y~D 230 (548)
T PLN02803 176 SCSIPLPPWVLEEMS--KNPDLVYTDRSG----------------------RRNP-EYISLGCDSLPVLRGRTPIQVYSD 230 (548)
T ss_pred cccccCCHHHHHhhh--cCCCceEecCCC----------------------Cccc-ceeccccccchhccCCCHHHHHHH
Confidence 02456543321 123456766432 1222 235688889987755432355666
Q ss_pred HHHHHHHHHHh
Q 014373 214 WIQEMAVYVKS 224 (426)
Q Consensus 214 w~~~~~~~Ir~ 224 (426)
|++......+.
T Consensus 231 fm~SFr~~F~~ 241 (548)
T PLN02803 231 YMRSFRERFKD 241 (548)
T ss_pred HHHHHHHHHHH
Confidence 66555544444
No 57
>PLN02801 beta-amylase
Probab=95.89 E-value=0.096 Score=53.43 Aligned_cols=130 Identities=12% Similarity=0.306 Sum_probs=83.2
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCCcccccC-CCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChh--
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQT-SPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKA-- 137 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~-~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~-- 137 (426)
....++..|..+|++|+.-|=+-+. |-.+|. .|++|| |..+.++++.+++.|+|+.+.|.-| -+||.-
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVW----WGiVE~~~P~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFH--qCGGNVGD 105 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVW----WGIVESKGPKQYD---WSAYRSLFELVQSFGLKIQAIMSFH--QCGGNVGD 105 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeee----eeeeccCCCCccC---cHHHHHHHHHHHHcCCeEEEEEEec--ccCCCCCC
Confidence 4578999999999999999888433 444554 589999 8999999999999999996665322 234320
Q ss_pred ----hHHHhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCCCCCChhHHHH
Q 014373 138 ----QYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQS 213 (426)
Q Consensus 138 ----~y~~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~~~~~~~~~ 213 (426)
..+.|....|. .+.+-||+|..- .+| +--++|-+-|+|-..+...-+.+.+
T Consensus 106 ~~~IpLP~WV~~~g~--~~pDi~ftDr~G----------------------~rn-~EyLSlg~D~~pvl~GRTplq~Y~D 160 (517)
T PLN02801 106 AVNIPIPQWVRDVGD--SDPDIFYTNRSG----------------------NRN-KEYLSIGVDNLPLFHGRTAVEMYSD 160 (517)
T ss_pred cccccCCHHHHHhhc--cCCCceeecCCC----------------------CcC-cceeeeccCcccccCCCCHHHHHHH
Confidence 02456544332 123456766322 122 2346788999998765432355555
Q ss_pred HHHHHHHHHHh
Q 014373 214 WIQEMAVYVKS 224 (426)
Q Consensus 214 w~~~~~~~Ir~ 224 (426)
|++........
T Consensus 161 fm~SFr~~F~~ 171 (517)
T PLN02801 161 YMKSFRENMAD 171 (517)
T ss_pred HHHHHHHHHHH
Confidence 65555554444
No 58
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=95.87 E-value=0.12 Score=51.20 Aligned_cols=247 Identities=15% Similarity=0.218 Sum_probs=127.5
Q ss_pred HHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhHHHhhhhcCCC
Q 014373 70 HQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLN 149 (426)
Q Consensus 70 ~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~g~~ 149 (426)
..-++.|+|.||-+.. |+..... -.|+ +.++|++++.....| +-++.+.=.|.......+ .|-.
T Consensus 12 t~~~Ei~v~yi~~~~v----~h~~~q~-~~~~---~t~~d~i~d~~~~~~-~~~ie~~l~~~~l~~~~~--~wq~----- 75 (428)
T COG3664 12 TTDDEIQVNYIRRHGV----WHVNAQK-LFYP---FTYIDEIIDTLLDLG-LDLIELFLIWNNLNTKEH--QWQL----- 75 (428)
T ss_pred chhhhhceeeehhcce----eeeeecc-ccCC---hHHHHHHHHHHHHhc-cHHHHHhhcccchhhhhh--hccc-----
Confidence 3445899999987543 3311111 1233 677889999998888 343433223433221111 2311
Q ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCC-CcEEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 014373 150 LTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKND-PTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAK 228 (426)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~-p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~ 228 (426)
+-..+...++.++.++++++.| |+-. -+...++..|||+...+ ...+.+-+..+ .|+.+|.
T Consensus 76 -----n~~~~~~~~dl~~~fl~h~~~~--------vg~e~v~kw~f~~~~~pn~~ad--~~eyfk~y~~~---a~~~~p~ 137 (428)
T COG3664 76 -----NVDDPKSVFDLIAAFLKHVIRR--------VGVEFVRKWPFYSPNEPNLLAD--KQEYFKLYDAT---ARQRAPS 137 (428)
T ss_pred -----ccCCcHhHHHHHHHHHHHHHHH--------hChhheeecceeecCCCCcccc--hHHHHHHHHhh---hhccCcc
Confidence 1122235888999999999999 5522 34566889999998642 22333333333 3466665
Q ss_pred CEEEeccccccCCCCCCCccCCCCcccccccchhhhhcCCCCcceEEEeccCCCccC--CCC-hhHH-------HHHHHH
Q 014373 229 HLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDFASVHIYADSWIS--QTI-SDAH-------LQFTKS 298 (426)
Q Consensus 229 ~lV~~g~~g~~~~~~~~~~~~np~~y~~~~g~d~~~~~~~~~iD~~s~H~Y~~~w~~--~~~-~~~~-------~~~~~~ 298 (426)
..| |. .+ ||. .-..|.. ..+.|||++.|.|...-.. ..+ .+.. ++. .+
T Consensus 138 i~v--g~--~w----------~~e-----~l~~~~k--~~d~idfvt~~a~~~~av~~~~~~~~~~~l~~~~~~l~~-~r 195 (428)
T COG3664 138 IQV--GG--SW----------NTE-----RLHEFLK--KADEIDFVTELANSVDAVDFSTPGAEEVKLSELKRTLED-LR 195 (428)
T ss_pred eee--cc--cc----------CcH-----HHhhhhh--ccCcccceeecccccccccccCCCchhhhhhhhhhhhhH-HH
Confidence 443 31 11 221 0011222 4678999999999542211 111 1100 111 12
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCCCCCCC--CChHHHHHHHHHHHHHHHhhhhcCCCcccccccccCCC----CCCC--
Q 014373 299 WMEAHIEDAEKYLRMPVLFTEFGVSAKDTG--YNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPD----GTDY-- 370 (426)
Q Consensus 299 ~l~~~~~~a~~~~~kPv~v~EfG~~~~~~~--~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~----g~~~-- 370 (426)
.+.+.++. .. .|+|+++.||.....+-. .++-.|.+|+- .++.+ .++++.+.-+|.+.+- |.++
T Consensus 196 ~~~d~i~~-~~-~~~pl~~~~wntlt~~~~~~n~sy~raa~i~---~~Lr~---~g~~v~a~~yW~~sdl~e~~g~~~~~ 267 (428)
T COG3664 196 GLKDLIQH-HS-LGLPLLLTNWNTLTGPREPTNGSYVRAAYIM---RLLRE---AGSPVDAFGYWTNSDLHEEHGPPEAP 267 (428)
T ss_pred HHHHHHHh-cc-CCCcceeecccccCCCccccCceeehHHHHH---HHHHh---cCChhhhhhhhhcccccccCCCcccc
Confidence 23333321 12 589999999988766411 12233444432 22222 2556777888888643 2221
Q ss_pred CCCCceEEeC
Q 014373 371 MNDGYAIVLS 380 (426)
Q Consensus 371 ~~dg~~i~~~ 380 (426)
.-+||+....
T Consensus 268 ~~~gfel~~~ 277 (428)
T COG3664 268 FVGGFELFAP 277 (428)
T ss_pred cccceeeecc
Confidence 2257776653
No 59
>PLN00197 beta-amylase; Provisional
Probab=95.80 E-value=0.1 Score=53.77 Aligned_cols=130 Identities=15% Similarity=0.211 Sum_probs=82.2
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCCcccccC-CCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChh--
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQT-SPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKA-- 137 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~-~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~-- 137 (426)
....++..|..+|++|+.-|=+-+. |-.++. .|++|| |..+.++++++++.|+|+.+.|.-| -+||.-
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvW----WGiVE~~~p~~Yd---WsgY~~L~~mvr~~GLKlq~VmSFH--qCGGNVGD 195 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVW----WGLVERESPGVYN---WGGYNELLEMAKRHGLKVQAVMSFH--QCGGNVGD 195 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeee----eeeeccCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEec--ccCCCCCC
Confidence 4578999999999999999888433 444554 688999 8999999999999999997766322 234320
Q ss_pred ----hHHHhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCCCCCChhHHHH
Q 014373 138 ----QYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQS 213 (426)
Q Consensus 138 ----~y~~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~~~~~~~~~ 213 (426)
..+.|....|. .+.+-||+|..- .+|. --++|-.-|+|-..+...-+.+.+
T Consensus 196 ~~~IpLP~WV~~~g~--~dpDifftDr~G----------------------~rn~-EyLSlg~D~~pvl~GRTpiq~Y~D 250 (573)
T PLN00197 196 SCTIPLPKWVVEEVD--KDPDLAYTDQWG----------------------RRNY-EYVSLGCDTLPVLKGRTPVQCYAD 250 (573)
T ss_pred cccccCCHHHHHhhc--cCCCceeecCCC----------------------Cccc-ceeccccccccccCCCCHHHHHHH
Confidence 13456543331 123457776432 1222 245688888987655433345555
Q ss_pred HHHHHHHHHHh
Q 014373 214 WIQEMAVYVKS 224 (426)
Q Consensus 214 w~~~~~~~Ir~ 224 (426)
|++........
T Consensus 251 FM~SFr~~F~~ 261 (573)
T PLN00197 251 FMRAFRDNFKH 261 (573)
T ss_pred HHHHHHHHHHH
Confidence 55544444443
No 60
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=95.74 E-value=0.053 Score=46.03 Aligned_cols=106 Identities=12% Similarity=0.273 Sum_probs=64.4
Q ss_pred HHHHHHHHHCCCCEEEeccccCCCccc----cc-CCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhHH
Q 014373 66 SELFHQASSAGLTVCRTWAFNDGQWRA----LQ-TSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYV 140 (426)
Q Consensus 66 ~~dl~~~~~~G~N~vRi~~~~~~~~~~----~~-~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~ 140 (426)
++.++.++++|+|+|-+++-+-+.|.. +. ..|+ +. .+.|-.+|++|+++||+|++-+.-.|... -...++
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~-L~---~Dllge~v~a~h~~Girv~ay~~~~~d~~-~~~~HP 77 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPG-LK---RDLLGEQVEACHERGIRVPAYFDFSWDED-AAERHP 77 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCC-CC---cCHHHHHHHHHHHCCCEEEEEEeeecChH-HHHhCC
Confidence 567889999999999996532222211 11 1232 22 46678999999999999999885444321 113455
Q ss_pred Hhhhh--cCCCCC----CCCCcCC---CHHHHHHHHHHHHHHHhc
Q 014373 141 KWGKA--AGLNLT----SDDEFFS---HTTLKSYYKAHVKTVLNR 176 (426)
Q Consensus 141 ~W~~~--~g~~~~----~~~~~~~---~~~~~~~~~~~~~~iv~r 176 (426)
.|..- .|.+.. ....+++ |...++.....++++++|
T Consensus 78 eW~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~ 122 (132)
T PF14871_consen 78 EWFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDR 122 (132)
T ss_pred ceeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHc
Confidence 66421 232110 0111221 346778889999999999
No 61
>PRK14705 glycogen branching enzyme; Provisional
Probab=95.71 E-value=0.54 Score=53.85 Aligned_cols=165 Identities=15% Similarity=0.250 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHCCCCEEEeccccC----CCc--cc---ccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCC-cCC
Q 014373 63 GKVSELFHQASSAGLTVCRTWAFND----GQW--RA---LQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNN-WDA 132 (426)
Q Consensus 63 ~~~~~dl~~~~~~G~N~vRi~~~~~----~~~--~~---~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~-w~~ 132 (426)
+..++.|+.+|+||+|+|=+....+ ..| .. +.+. ..|. ..+.|.++|++|+++||+||+++.-+ ...
T Consensus 766 ~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~-~ryG--t~~dfk~lVd~~H~~GI~VILD~V~nH~~~ 842 (1224)
T PRK14705 766 ELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPT-SRFG--HPDEFRFLVDSLHQAGIGVLLDWVPAHFPK 842 (1224)
T ss_pred HHHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcC-cccC--CHHHHHHHHHHHHHCCCEEEEEeccccCCc
Confidence 3445558999999999998843211 112 11 1111 1222 25678899999999999999997432 110
Q ss_pred -------CCChhhHHHhhhhcCCCCC-CCCCc-CCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEecc-----
Q 014373 133 -------YGGKAQYVKWGKAAGLNLT-SDDEF-FSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMN----- 198 (426)
Q Consensus 133 -------~gg~~~y~~W~~~~g~~~~-~~~~~-~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~N----- 198 (426)
+.|.+.|..-....|.... ....| |.++++++.+.+-++..+++.. +.|.++---.+++-.+-.-
T Consensus 843 d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyh-iDGfR~Dav~~mly~Dysr~~g~w 921 (1224)
T PRK14705 843 DSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFH-IDGLRVDAVASMLYLDYSREEGQW 921 (1224)
T ss_pred chhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC-CCcEEEeehhhhhhcccccccccc
Confidence 1111111000000000000 00111 5678999999999999998711 1121111111221111111
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHhcCCCCEE
Q 014373 199 EPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLV 231 (426)
Q Consensus 199 Ep~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV 231 (426)
.|+..+-........+++++.+.|++..|+.++
T Consensus 922 ~pn~~gg~en~~ai~fl~~ln~~v~~~~p~~~~ 954 (1224)
T PRK14705 922 RPNRFGGRENLEAISFLQEVNATVYKTHPGAVM 954 (1224)
T ss_pred cccccCCccChHHHHHHHHHHHHHHHHCCCeEE
Confidence 222221111234677999999999999988644
No 62
>smart00642 Aamy Alpha-amylase domain.
Probab=95.69 E-value=0.044 Score=48.49 Aligned_cols=69 Identities=13% Similarity=0.154 Sum_probs=45.2
Q ss_pred CChHHHHHHHHHHHHCCCCEEEeccccC-C----CcccccCCC-CCCCh--HHHHHHHHHHHHHHHcCCEEEEecCC
Q 014373 60 STRGKVSELFHQASSAGLTVCRTWAFND-G----QWRALQTSP-SVYDE--EVFKALDFVISEAKKYKIRLILSLTN 128 (426)
Q Consensus 60 ~~~~~~~~dl~~~~~~G~N~vRi~~~~~-~----~~~~~~~~~-g~~~e--~~l~~lD~~l~~a~~~Gi~vil~l~~ 128 (426)
++...+.+.|+.++++|+|+|-+..... . .+..+.+.. -.+++ ...+.|.+++++|+++||+||+++.-
T Consensus 16 G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~ 92 (166)
T smart00642 16 GDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVI 92 (166)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 3567888899999999999999843211 1 011111000 01111 13578899999999999999999853
No 63
>PRK14706 glycogen branching enzyme; Provisional
Probab=95.62 E-value=0.4 Score=51.57 Aligned_cols=161 Identities=9% Similarity=0.157 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHCCCCEEEeccccC----CCc--c---cccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC-CcCC-
Q 014373 64 KVSELFHQASSAGLTVCRTWAFND----GQW--R---ALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN-NWDA- 132 (426)
Q Consensus 64 ~~~~dl~~~~~~G~N~vRi~~~~~----~~~--~---~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~-~w~~- 132 (426)
..++.++.++++|+|+|=+-...+ ..| . .+.+.+ .|. ..+.|.++|++|+++||+||+++.- +...
T Consensus 169 ~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~-~~g--~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~ 245 (639)
T PRK14706 169 LAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTS-RLG--TPEDFKYLVNHLHGLGIGVILDWVPGHFPTD 245 (639)
T ss_pred HHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCccccccccc-ccC--CHHHHHHHHHHHHHCCCEEEEEecccccCcc
Confidence 444545899999999999843211 111 1 011111 121 2567889999999999999999743 2111
Q ss_pred ------CCChhhH--HHhhhhcCCC--CCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEE------e
Q 014373 133 ------YGGKAQY--VKWGKAAGLN--LTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWE------L 196 (426)
Q Consensus 133 ------~gg~~~y--~~W~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~we------L 196 (426)
+.|.+.| ..+. .|.. .....-=+.++++++.+.+-++..++..+ +-|.++---.+++-++ +
T Consensus 246 ~~~l~~~dg~~~y~~~~~~--~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~-iDG~R~Dav~~~ly~d~~~~~~~ 322 (639)
T PRK14706 246 ESGLAHFDGGPLYEYADPR--KGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFH-VDGLRVDAVASMLYLDFSRTEWV 322 (639)
T ss_pred hhhhhccCCCcceeccCCc--CCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC-CCeEEEeeehheeecccCccccc
Confidence 0011111 1000 0100 00000013578999999999999887511 2222222112222222 2
Q ss_pred ccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCEEEec
Q 014373 197 MNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIG 234 (426)
Q Consensus 197 ~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~g 234 (426)
-|+... ........+++++...||+..|+.++ ++
T Consensus 323 ~~~~gg---~~n~~a~~fl~~ln~~v~~~~p~~~~-iA 356 (639)
T PRK14706 323 PNIHGG---RENLEAIAFLKRLNEVTHHMAPGCMM-IA 356 (639)
T ss_pred ccccCC---cccHHHHHHHHHHHHHHHHhCCCeEE-EE
Confidence 222221 11234667889999999999998644 44
No 64
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=95.60 E-value=0.27 Score=49.41 Aligned_cols=180 Identities=16% Similarity=0.190 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHCCCCEEEecc--ccCC-Ccc----cccCCCCC------CChHHHHHHHHHHHHHHHcCCEEEEecCCCc
Q 014373 64 KVSELFHQASSAGLTVCRTWA--FNDG-QWR----ALQTSPSV------YDEEVFKALDFVISEAKKYKIRLILSLTNNW 130 (426)
Q Consensus 64 ~~~~dl~~~~~~G~N~vRi~~--~~~~-~~~----~~~~~~g~------~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w 130 (426)
.-.+.++.+|++-+-++|.+. |.++ .|. +.+..|-. ..|..-=...+++++|++.|.-+++++.-.
T Consensus 50 ~RkDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~Gt~EF~~~~e~iGaep~~avN~G- 128 (501)
T COG3534 50 FRKDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEFGTHEFMDWCELIGAEPYIAVNLG- 128 (501)
T ss_pred hHHHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhcccccccccccccHHHHHHHHHHhCCceEEEEecC-
Confidence 445568899999999999864 2221 121 11222322 234444466789999999999999987321
Q ss_pred CCCCChhhHHHhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCCCCC---C
Q 014373 131 DAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDP---S 207 (426)
Q Consensus 131 ~~~gg~~~y~~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~~---~ 207 (426)
.+|.+.-..|..--..| ....|.+ +|.=-. ++.-=.|-.|.|+||....-.+ .
T Consensus 129 --srgvd~ar~~vEY~n~p---ggtywsd----------lR~~~G---------~~~P~nvK~w~lGNEm~GpWq~G~~~ 184 (501)
T COG3534 129 --SRGVDEARNWVEYCNHP---GGTYWSD----------LRRENG---------REEPWNVKYWGLGNEMDGPWQCGHKT 184 (501)
T ss_pred --CccHHHHHHHHHHccCC---CCChhHH----------HHHhcC---------CCCCcccceEEeccccCCCccccccc
Confidence 24444334453211000 1122221 111111 1111257789999999544222 2
Q ss_pred hhHHHHHHHHHHHHHHhcCCCC-EEEeccccccCCCCCCCccCCCCcccccccchhhhhcCCCCcceEEEeccCC
Q 014373 208 GDTLQSWIQEMAVYVKSIDAKH-LVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDFASVHIYAD 281 (426)
Q Consensus 208 ~~~~~~w~~~~~~~Ir~~dp~~-lV~~g~~g~~~~~~~~~~~~np~~y~~~~g~d~~~~~~~~~iD~~s~H~Y~~ 281 (426)
......+..+..++.|-.||.. +|..|+.+- .++ ..|. | .+-........+|++|.|+|-.
T Consensus 185 a~EY~~~A~e~~k~~k~~d~t~e~~v~g~a~~---~n~----~~~~-W-----~~~vl~~~~e~vD~ISlH~Y~G 246 (501)
T COG3534 185 APEYGRLANEYRKYMKYFDPTIENVVCGSANG---ANP----TDPN-W-----EAVVLEEAYERVDYISLHYYKG 246 (501)
T ss_pred CHHHHHHHHHHHHHHhhcCccccceEEeecCC---CCC----CchH-H-----HHHHHHHHhhhcCeEEEEEecC
Confidence 3456668888999999999965 444443221 111 1222 3 1111223456799999999943
No 65
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.21 E-value=0.21 Score=50.33 Aligned_cols=163 Identities=16% Similarity=0.284 Sum_probs=94.0
Q ss_pred CChHHHHHHHHHHHHCCCCEEEeccccCCC--cc-----cccCCCCCC-ChHHHHHHHHHHHHHHHcCCEEEEecCCCcC
Q 014373 60 STRGKVSELFHQASSAGLTVCRTWAFNDGQ--WR-----ALQTSPSVY-DEEVFKALDFVISEAKKYKIRLILSLTNNWD 131 (426)
Q Consensus 60 ~~~~~~~~dl~~~~~~G~N~vRi~~~~~~~--~~-----~~~~~~g~~-~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~ 131 (426)
.++..+.+.|+.++++|+|+|=.=+..++. |+ .....||++ -+.+++-|-.+|++|+++||+|+. |.
T Consensus 61 ~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~a-----Wf 135 (418)
T COG1649 61 FQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHA-----WF 135 (418)
T ss_pred ccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeee-----ch
Confidence 368899999999999999998763332221 11 011123432 245567788899999999999965 32
Q ss_pred CCCChh--------hHHHhhhhcCCC---CCCC---CCcCCC---HHHHHHHHHHHHHHHhcccccccccccCCC----c
Q 014373 132 AYGGKA--------QYVKWGKAAGLN---LTSD---DEFFSH---TTLKSYYKAHVKTVLNRVNTFTNLTYKNDP----T 190 (426)
Q Consensus 132 ~~gg~~--------~y~~W~~~~g~~---~~~~---~~~~~~---~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p----~ 190 (426)
..+.+. .++.|....... ..+. ..+|-| |++++.+.+.+.++|++ |.=|+ .
T Consensus 136 ~~~~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~--------YdvDGIQfDd 207 (418)
T COG1649 136 NPYRMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRN--------YDVDGIQFDD 207 (418)
T ss_pred hhcccCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhC--------CCCCceecce
Confidence 222110 111221110000 0011 345555 79999999999999998 54332 1
Q ss_pred EEEEEe----------------ccCCCCCCC----CChhHHHHHHHHHHHHHHhcCCCCEEEecc
Q 014373 191 IFAWEL----------------MNEPRCTSD----PSGDTLQSWIQEMAVYVKSIDAKHLVEIGL 235 (426)
Q Consensus 191 I~~weL----------------~NEp~~~~~----~~~~~~~~w~~~~~~~Ir~~dp~~lV~~g~ 235 (426)
++.|.+ .+.|..... +-.+.+.+++.+++..||++.|+..+++..
T Consensus 208 ~fy~~~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VKavKp~v~~svsp 272 (418)
T COG1649 208 YFYYPIPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVKAVKPNVKFSVSP 272 (418)
T ss_pred eecccCccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhhCCCeEEEEcc
Confidence 222111 111110000 001345566788999999999999998864
No 66
>PLN02960 alpha-amylase
Probab=95.11 E-value=0.93 Score=49.88 Aligned_cols=162 Identities=7% Similarity=0.086 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHCCCCEEEeccccC----CCc--cc---ccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC-CCcCCC
Q 014373 64 KVSELFHQASSAGLTVCRTWAFND----GQW--RA---LQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT-NNWDAY 133 (426)
Q Consensus 64 ~~~~dl~~~~~~G~N~vRi~~~~~----~~~--~~---~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~-~~w~~~ 133 (426)
..++.|+.++++|+|+|=+....+ ..| .. +.+. ..|. ..+.|.++|++|+++||+||+++. |+...-
T Consensus 418 ~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~-~~yG--tp~dfk~LVd~aH~~GI~VILDvV~NH~~~d 494 (897)
T PLN02960 418 FTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVS-SRFG--TPDDFKRLVDEAHGLGLLVFLDIVHSYAAAD 494 (897)
T ss_pred HHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcc-cccC--CHHHHHHHHHHHHHCCCEEEEEecccccCCc
Confidence 345679999999999999843211 011 10 1111 1122 146788999999999999999974 321110
Q ss_pred --CChhhHHH---hhhh---cCCCCC-CCCCc-CCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEE--eccCC-
Q 014373 134 --GGKAQYVK---WGKA---AGLNLT-SDDEF-FSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWE--LMNEP- 200 (426)
Q Consensus 134 --gg~~~y~~---W~~~---~g~~~~-~~~~~-~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~we--L~NEp- 200 (426)
.+...|.. +.-. .|.... ....| |.++++++.+.+-++..++.. .+.|.++-.-.+++-.+ ..+++
T Consensus 495 ~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Ey-hIDGfR~DAV~sMlY~d~g~~~~~G 573 (897)
T PLN02960 495 EMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEY-RVDGFQFHSLGSMLYTHNGFASFTG 573 (897)
T ss_pred cccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHH-CCCceeecccceeeeeccCccccCC
Confidence 01100000 0000 000000 00111 457899999999999988761 12333333333333222 11111
Q ss_pred ------CCCCCCChhHHHHHHHHHHHHHHhcCCCCEEE
Q 014373 201 ------RCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVE 232 (426)
Q Consensus 201 ------~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~ 232 (426)
+... ......+++++...|++..|+.+++
T Consensus 574 ~~~~~~n~~~---d~~Ai~fL~~lN~~v~~~~P~vilI 608 (897)
T PLN02960 574 DLDEYCNQYV---DRDALIYLILANEMLHQLHPNIITI 608 (897)
T ss_pred cccccCCccC---CchHHHHHHHHHHHHHhhCCCeEEE
Confidence 1111 2347788999999999988887543
No 67
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=95.06 E-value=0.66 Score=45.22 Aligned_cols=146 Identities=14% Similarity=0.134 Sum_probs=87.0
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCCc-------cccc---------CCCCCCChHHHHHHHHHHHHHHHcCCEEEE
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQW-------RALQ---------TSPSVYDEEVFKALDFVISEAKKYKIRLIL 124 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~-------~~~~---------~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil 124 (426)
+.+.+.+.++.|+..++|++.+++-.+..| |.+. ...|.|. -+.+..+++.|+++||.||.
T Consensus 14 ~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT---~~di~elv~yA~~rgI~viP 90 (303)
T cd02742 14 SVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYT---YAQLKDIIEYAAARGIEVIP 90 (303)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeEC---HHHHHHHHHHHHHcCCEEEE
Confidence 468999999999999999999865433333 2221 1123466 35567899999999999999
Q ss_pred ecCCCcCCCCChhhHHHhhhhcCCC------CC--CCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEe
Q 014373 125 SLTNNWDAYGGKAQYVKWGKAAGLN------LT--SDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWEL 196 (426)
Q Consensus 125 ~l~~~w~~~gg~~~y~~W~~~~g~~------~~--~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL 196 (426)
.+.- .|.+.....+....+.+ .. ...--.++|++.+..++.+++++.- +. .+.| -|
T Consensus 91 EiD~----PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~l--------f~-~~~i---Hi 154 (303)
T cd02742 91 EIDM----PGHSTAFVKSFPKLLTECYAGLKLRDVFDPLDPTLPKGYDFLDDLFGEIAEL--------FP-DRYL---HI 154 (303)
T ss_pred eccc----hHHHHHHHHhCHHhccCccccCCCCCCCCccCCCCccHHHHHHHHHHHHHHh--------CC-CCeE---Ee
Confidence 9732 13332211111000100 00 0111245788989999999999886 32 1222 12
Q ss_pred -ccCCCCCCCCChhHHHHHHHHHHHHHHhcC
Q 014373 197 -MNEPRCTSDPSGDTLQSWIQEMAVYVKSID 226 (426)
Q Consensus 197 -~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~d 226 (426)
+=|..... ...+.+..+++++.+.+++..
T Consensus 155 GgDE~~~~~-~~~~l~~~f~~~~~~~v~~~g 184 (303)
T cd02742 155 GGDEAHFKQ-DRKHLMSQFIQRVLDIVKKKG 184 (303)
T ss_pred cceecCCCC-CHHHHHHHHHHHHHHHHHHcC
Confidence 22222111 113457788899999999876
No 68
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=94.93 E-value=1.1 Score=44.08 Aligned_cols=146 Identities=16% Similarity=0.176 Sum_probs=87.5
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCCcc-------ccc--------------------CCCCCCChHHHHHHHHHHH
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQWR-------ALQ--------------------TSPSVYDEEVFKALDFVIS 113 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~-------~~~--------------------~~~g~~~e~~l~~lD~~l~ 113 (426)
+.+.+.+.|+.|+..++|++-++. .| .|+ .+. ...|.|. -+.+..+++
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHl-tD-~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT---~~di~eiv~ 89 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHL-ND-NLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYT---KEEFKELIA 89 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEee-cC-CcccccCCCchhhhhhhhhccccccccccCCCCCCCCccc---HHHHHHHHH
Confidence 468999999999999999998854 33 221 110 1123455 456678999
Q ss_pred HHHHcCCEEEEecCCCcCCCCChhhHHHhhhhcCCCC-----CCCCCcCCCHHHHHHHHHHHHHHHhcccc-cccccccC
Q 014373 114 EAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNL-----TSDDEFFSHTTLKSYYKAHVKTVLNRVNT-FTNLTYKN 187 (426)
Q Consensus 114 ~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~g~~~-----~~~~~~~~~~~~~~~~~~~~~~iv~r~n~-~tg~~y~~ 187 (426)
.|+++||.||..+.- .|.+.....+....+... ....--.++|++.+..++.+++++.-..+ ..-.+.+.
T Consensus 90 yA~~rgI~vIPEID~----PGH~~a~~~~~pel~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~E~~~~f~~~~~~~HiGg 165 (326)
T cd06564 90 YAKDRGVNIIPEIDS----PGHSLAFTKAMPELGLKNPFSKYDKDTLDISNPEAVKFVKALFDEYLDGFNPKSDTVHIGA 165 (326)
T ss_pred HHHHcCCeEeccCCC----cHHHHHHHHhhHHhcCCCcccCCCcccccCCCHHHHHHHHHHHHHHHHhcCCCCCEEEecc
Confidence 999999999998732 133322111111111110 01111246789999999999999987322 11122333
Q ss_pred CCcEEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhcC
Q 014373 188 DPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSID 226 (426)
Q Consensus 188 ~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~d 226 (426)
|. .... ....+.+..|++++.+.|++..
T Consensus 166 DE----------~~~~-~~~~~~~~~f~~~~~~~v~~~g 193 (326)
T cd06564 166 DE----------YAGD-AGYAEAFRAYVNDLAKYVKDKG 193 (326)
T ss_pred cc----------cccc-CccHHHHHHHHHHHHHHHHHcC
Confidence 32 2111 1124667889999999999874
No 69
>PRK12568 glycogen branching enzyme; Provisional
Probab=94.78 E-value=1.5 Score=47.65 Aligned_cols=162 Identities=10% Similarity=0.170 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHCCCCEEEeccccC----CCc--cc---ccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCC-cCC
Q 014373 63 GKVSELFHQASSAGLTVCRTWAFND----GQW--RA---LQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNN-WDA 132 (426)
Q Consensus 63 ~~~~~dl~~~~~~G~N~vRi~~~~~----~~~--~~---~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~-w~~ 132 (426)
+..++.|+.++++|+|+|=+....+ ..| .. +.+.+ .|. ..+.|.++|++|+++||+||+++.-+ ...
T Consensus 270 ~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~-~~G--~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~ 346 (730)
T PRK12568 270 TLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTA-RHG--SPDGFAQFVDACHRAGIGVILDWVSAHFPD 346 (730)
T ss_pred HHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCc-ccC--CHHHHHHHHHHHHHCCCEEEEEeccccCCc
Confidence 3445568999999999998843211 111 11 11111 111 25678899999999999999997432 111
Q ss_pred -------CCChhhHHHhhhhcCCCCC-CCCC-cCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEE--------
Q 014373 133 -------YGGKAQYVKWGKAAGLNLT-SDDE-FFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWE-------- 195 (426)
Q Consensus 133 -------~gg~~~y~~W~~~~g~~~~-~~~~-~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~we-------- 195 (426)
+.|...|.......|.... .... =|.+|++++.+.+-++..++.. .+-|.++-.-..++..+
T Consensus 347 d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~ey-hIDG~R~DAva~mly~d~~r~~g~w 425 (730)
T PRK12568 347 DAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHY-HLDGLRVDAVASMLYRDYGRAEGEW 425 (730)
T ss_pred cccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHh-CceEEEEcCHhHhhhhccccccccc
Confidence 1111111100000010000 0001 1567899999998888888761 11222221112222221
Q ss_pred eccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCEE
Q 014373 196 LMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLV 231 (426)
Q Consensus 196 L~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV 231 (426)
+-|+-.. ...-....+++++.+.|++..|+.++
T Consensus 426 ~pn~~gg---~en~ea~~Fl~~ln~~v~~~~P~~~~ 458 (730)
T PRK12568 426 VPNAHGG---RENLEAVAFLRQLNREIASQFPGVLT 458 (730)
T ss_pred cccccCC---ccChHHHHHHHHHHHHHHHHCCCeEE
Confidence 1122111 11123567899999999999998754
No 70
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=94.78 E-value=0.42 Score=51.26 Aligned_cols=145 Identities=16% Similarity=0.247 Sum_probs=78.8
Q ss_pred HHHHHHHHHCCCCEEEecc-ccCC-----------Cc--cc---ccCCCCCC--C----hHHHHHHHHHHHHHHHcCCEE
Q 014373 66 SELFHQASSAGLTVCRTWA-FNDG-----------QW--RA---LQTSPSVY--D----EEVFKALDFVISEAKKYKIRL 122 (426)
Q Consensus 66 ~~dl~~~~~~G~N~vRi~~-~~~~-----------~~--~~---~~~~~g~~--~----e~~l~~lD~~l~~a~~~Gi~v 122 (426)
.+-|+.|+++|+|+|=+-. +... .| .. +.+.+ .| + ....+.|..+|++|+++||+|
T Consensus 167 ~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~-~y~~~p~~~~~~~~efk~lV~~~H~~Gi~V 245 (605)
T TIGR02104 167 STGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEG-SYSTNPYDPATRIRELKQMIQALHENGIRV 245 (605)
T ss_pred hhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcCh-hhhcCCCccchHHHHHHHHHHHHHHCCCEE
Confidence 3569999999999999832 2110 01 10 01110 11 1 112577999999999999999
Q ss_pred EEecCCCcCCCCChhhHH----Hhh---hhcCCCCCC---CCCc-CCCHHHHHHHHHHHHHHHhcccccccccccCCCcE
Q 014373 123 ILSLTNNWDAYGGKAQYV----KWG---KAAGLNLTS---DDEF-FSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTI 191 (426)
Q Consensus 123 il~l~~~w~~~gg~~~y~----~W~---~~~g~~~~~---~~~~-~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I 191 (426)
|+++.-+-...+....+. .|. ...|..... ..++ ..+|.+++.+.+.++..++. |+=+.
T Consensus 246 ilDvV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e--------~~iDG-- 315 (605)
T TIGR02104 246 IMDVVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKE--------YNIDG-- 315 (605)
T ss_pred EEEEEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHH--------cCCCE--
Confidence 999743211000000000 010 000100000 0111 34688999999999998887 64332
Q ss_pred EEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCEE
Q 014373 192 FAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLV 231 (426)
Q Consensus 192 ~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV 231 (426)
+=+++..... ..+++++.+.||+.+|+..+
T Consensus 316 fR~D~~~~~~----------~~~~~~~~~~~~~~~p~~~l 345 (605)
T TIGR02104 316 FRFDLMGIHD----------IETMNEIRKALNKIDPNILL 345 (605)
T ss_pred EEEechhcCC----------HHHHHHHHHHHHhhCCCeEE
Confidence 1244453321 23567888888999887654
No 71
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=94.70 E-value=0.047 Score=52.58 Aligned_cols=66 Identities=12% Similarity=0.175 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCC--CcccccCCC-CCCCh--HHHHHHHHHHHHHHHcCCEEEEecC
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDG--QWRALQTSP-SVYDE--EVFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~--~~~~~~~~~-g~~~e--~~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
-.-+.+.|+.|+++|+|+|-+..+.+. .+..+.+.. -.+++ ...+.|.++|++|+++||+||+++.
T Consensus 3 ~~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 3 FRGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 456778899999999999998432211 111111100 00111 2367889999999999999999974
No 72
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=94.61 E-value=1.1 Score=48.74 Aligned_cols=163 Identities=9% Similarity=0.203 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHCCCCEEEeccccC----CCc--c---cccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC-CcCC
Q 014373 63 GKVSELFHQASSAGLTVCRTWAFND----GQW--R---ALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN-NWDA 132 (426)
Q Consensus 63 ~~~~~dl~~~~~~G~N~vRi~~~~~----~~~--~---~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~-~w~~ 132 (426)
+..++.|+.++++|+|+|=+-...+ ..| . .+.+.+ .|. ..+.|.++|++|+++||+||+++.- +-..
T Consensus 251 ~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~-~~G--tp~dlk~LVd~aH~~GI~VilDvV~nH~~~ 327 (758)
T PLN02447 251 EFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSS-RSG--TPEDLKYLIDKAHSLGLRVLMDVVHSHASK 327 (758)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccccc-ccC--CHHHHHHHHHHHHHCCCEEEEEeccccccc
Confidence 3456779999999999999843211 111 1 011111 111 1467889999999999999999743 2111
Q ss_pred --CCChhhH----HHhhhh--cCCCC-CCCCCc-CCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEE------Ee
Q 014373 133 --YGGKAQY----VKWGKA--AGLNL-TSDDEF-FSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAW------EL 196 (426)
Q Consensus 133 --~gg~~~y----~~W~~~--~g~~~-~~~~~~-~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~w------eL 196 (426)
..|...+ ..|... .|... -....| |.++++++.+.+-++..++... +-|.++-.-.+++-. +.
T Consensus 328 ~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~-IDGfRfDaV~smlY~~hg~~~~f 406 (758)
T PLN02447 328 NTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYK-FDGFRFDGVTSMLYHHHGLQMAF 406 (758)
T ss_pred cccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhC-cccccccchhhhhccccCccccc
Confidence 0010000 001100 00000 000011 4578999999999999888511 223323222233211 11
Q ss_pred c---cCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCEE
Q 014373 197 M---NEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLV 231 (426)
Q Consensus 197 ~---NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV 231 (426)
. ||- .+.........+++.+...|++..|+.++
T Consensus 407 ~~~~~~~--~g~~~d~~a~~fL~~~N~~i~~~~p~~~~ 442 (758)
T PLN02447 407 TGNYNEY--FGMATDVDAVVYLMLANDLLHGLYPEAVT 442 (758)
T ss_pred ccCcccc--cCCccChHHHHHHHHHHHHHHHhCCCeEE
Confidence 1 221 11111234677899999999999998754
No 73
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=94.35 E-value=1.2 Score=44.39 Aligned_cols=146 Identities=16% Similarity=0.194 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHHHCCCCEEEecc-ccCC--CcccccCCCCCCC----hHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCC
Q 014373 62 RGKVSELFHQASSAGLTVCRTWA-FNDG--QWRALQTSPSVYD----EEVFKALDFVISEAKKYKIRLILSLTNNWDAYG 134 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~-~~~~--~~~~~~~~~g~~~----e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~g 134 (426)
.-+.++.++.+|++|++.+=+-. +.++ .|+. .-..|+ ...-+-+..++++|+|+||++.+.++.. +.+.
T Consensus 90 ~fD~dqW~~~ak~aGakY~VlTakHHDGF~LW~S---~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~-dw~~ 165 (346)
T PF01120_consen 90 KFDADQWAKLAKDAGAKYVVLTAKHHDGFCLWPS---KYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPW-DWHH 165 (346)
T ss_dssp T--HHHHHHHHHHTT-SEEEEEEE-TT--BSS-----TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESS-SCCC
T ss_pred cCCHHHHHHHHHHcCCCEEEeehhhcCccccCCC---CCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecch-HhcC
Confidence 34678899999999999877632 2222 1321 101121 1234577899999999999999987532 2110
Q ss_pred ChhhHHHhhhhcCCCCCCCCCcCCCHH-HHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCCCCCChhHHHH
Q 014373 135 GKAQYVKWGKAAGLNLTSDDEFFSHTT-LKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQS 213 (426)
Q Consensus 135 g~~~y~~W~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~~~~~~~~~ 213 (426)
+.|..-. .+........--..++ ..+.+...+++|++| | +|.++=++....... ...
T Consensus 166 --~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~--------Y--~~d~lWfDg~~~~~~------~~~-- 223 (346)
T PF01120_consen 166 --PDYPPDE--EGDENGPADGPGNWQRYYNEYWLAQLRELLTR--------Y--KPDILWFDGGWPDPD------EDW-- 223 (346)
T ss_dssp --TTTTSSC--HCHHCC--HCCHHHHHHHHHHHHHHHHHHHHC--------S--TESEEEEESTTSCCC------THH--
T ss_pred --cccCCCc--cCCcccccccchhhHhHhhhhhHHHHHHHHhC--------C--CcceEEecCCCCccc------ccc--
Confidence 0000000 0000000000000012 344777999999999 9 788887887776521 111
Q ss_pred HHHHHHHHHHhcCCCCEEEe
Q 014373 214 WIQEMAVYVKSIDAKHLVEI 233 (426)
Q Consensus 214 w~~~~~~~Ir~~dp~~lV~~ 233 (426)
-..++.+.||++.|+.+|.-
T Consensus 224 ~~~~~~~~i~~~qp~~ii~~ 243 (346)
T PF01120_consen 224 DSAELYNWIRKLQPDVIINN 243 (346)
T ss_dssp HHHHHHHHHHHHSTTSEEEC
T ss_pred CHHHHHHHHHHhCCeEEEec
Confidence 12888999999999888754
No 74
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=93.91 E-value=0.78 Score=48.80 Aligned_cols=177 Identities=13% Similarity=0.161 Sum_probs=92.2
Q ss_pred EeeccchhhhccCC----CChHHHHHHHHHHHHCCCCEEEeccccC----CCc--ccc-cCCC-CCC-ChHHHHHHHHHH
Q 014373 46 GFNTYWLMVFAADQ----STRGKVSELFHQASSAGLTVCRTWAFND----GQW--RAL-QTSP-SVY-DEEVFKALDFVI 112 (426)
Q Consensus 46 G~N~~~~~~~~~~~----~~~~~~~~dl~~~~~~G~N~vRi~~~~~----~~~--~~~-~~~~-g~~-~e~~l~~lD~~l 112 (426)
.+++|.++..+..+ ...+..++-|..+++||+|+|=+....+ ..| +.. .-+| -.| .+ +.|.++|
T Consensus 144 ~~vIYElHvGs~~~~~~~~~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtP---edfk~fV 220 (628)
T COG0296 144 PIVIYELHVGSFTPDRFLGYFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTP---EDFKALV 220 (628)
T ss_pred CceEEEEEeeeccCCCCcCHHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCH---HHHHHHH
Confidence 45555544333322 3568889999999999999999943221 122 110 0011 011 23 4556899
Q ss_pred HHHHHcCCEEEEecC-CCcCC-------CCChhhHH--HhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccc
Q 014373 113 SEAKKYKIRLILSLT-NNWDA-------YGGKAQYV--KWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTN 182 (426)
Q Consensus 113 ~~a~~~Gi~vil~l~-~~w~~-------~gg~~~y~--~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg 182 (426)
|+|.++||.|||+.. ++... +.|...|. ++.+....+......++..++++..+..-...-++.. .+.|
T Consensus 221 D~aH~~GIgViLD~V~~HF~~d~~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~y-HiDG 299 (628)
T COG0296 221 DAAHQAGIGVILDWVPNHFPPDGNYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANALYWLEEY-HIDG 299 (628)
T ss_pred HHHHHcCCEEEEEecCCcCCCCcchhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHHHHHHHh-CCcc
Confidence 999999999999964 32221 11111111 0000000000112234446778777777666666651 1223
Q ss_pred ccccCCCcEEEE--------EeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCC
Q 014373 183 LTYKNDPTIFAW--------ELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKH 229 (426)
Q Consensus 183 ~~y~~~p~I~~w--------eL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~ 229 (426)
.++---++|+-. .+-||.... +.-.+.++++++.+.|+..-|+.
T Consensus 300 lRvDAV~smly~d~~~~~~~~~~n~~ggr---~n~~a~efl~~~n~~i~~~~pg~ 351 (628)
T COG0296 300 LRVDAVASMLYLDYSRAEGEWVPNEYGGR---ENLEAAEFLRNLNSLIHEEEPGA 351 (628)
T ss_pred eeeehhhhhhccchhhhhhcccccccCCc---ccHHHHHHhhhhhhhhcccCCCc
Confidence 333222333222 233443321 12346778899999999887766
No 75
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=92.98 E-value=0.15 Score=50.99 Aligned_cols=121 Identities=15% Similarity=0.307 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCC-CCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCCh----
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTS-PSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGK---- 136 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~-~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~---- 136 (426)
...++..|+.||++|+.-|=+-+. |-.++.. |++|| |..++++++.+++.|+|+.+.|.-| -+||.
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvW----WGiVE~~~p~~yd---Ws~Y~~l~~~vr~~GLk~~~vmsfH--~cGgNvgD~ 85 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVW----WGIVEGEGPQQYD---WSGYRELFEMVRDAGLKLQVVMSFH--QCGGNVGDD 85 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEE----HHHHTGSSTTB------HHHHHHHHHHHHTT-EEEEEEE-S---BSSSTTSS
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeE----eeeeccCCCCccC---cHHHHHHHHHHHHcCCeEEEEEeee--cCCCCCCCc
Confidence 358999999999999999888443 4445554 88998 9999999999999999997765321 22332
Q ss_pred ---hhHHHhhhhcCC--CC--CC-----C----CCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCC
Q 014373 137 ---AQYVKWGKAAGL--NL--TS-----D----DEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEP 200 (426)
Q Consensus 137 ---~~y~~W~~~~g~--~~--~~-----~----~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp 200 (426)
+ .+.|....+. .+ ++ . .-++.... ++.|.++++.+.++...| . .+|...+++=-|
T Consensus 86 ~~Ip-LP~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~f~~~-----~--~~I~~I~vglGP 156 (402)
T PF01373_consen 86 CNIP-LPSWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDNFSDY-----L--STITEIQVGLGP 156 (402)
T ss_dssp SEB--S-HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHHCHHH-----H--TGEEEEEE--SG
T ss_pred cCCc-CCHHHHhccccCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHHHHHH-----H--hhheEEEeccCC
Confidence 2 2456532110 00 00 0 01233334 788888888888883322 1 356656654444
No 76
>PLN02361 alpha-amylase
Probab=92.84 E-value=0.67 Score=46.95 Aligned_cols=86 Identities=10% Similarity=0.085 Sum_probs=53.6
Q ss_pred ECCeEEEEEEeeccchhhhccCCCChHHHHHHHHHHHHCCCCEEEeccccCC-CcccccCCC-CCCChH--HHHHHHHHH
Q 014373 37 VNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDG-QWRALQTSP-SVYDEE--VFKALDFVI 112 (426)
Q Consensus 37 ~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~N~vRi~~~~~~-~~~~~~~~~-g~~~e~--~l~~lD~~l 112 (426)
.+|..+.+-|+|- .... ..-...+.+.++.|+++|++.|=+...... ....+.+.. -.+++. ..+.|..+|
T Consensus 8 ~~~~~v~lQ~F~W-~~~~----~~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li 82 (401)
T PLN02361 8 RNGREILLQAFNW-ESHK----HDWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLL 82 (401)
T ss_pred cCCCcEEEEEEec-cCCc----cHHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHH
Confidence 4578888899982 1111 112367889999999999999888432211 000011100 001111 256788999
Q ss_pred HHHHHcCCEEEEecC
Q 014373 113 SEAKKYKIRLILSLT 127 (426)
Q Consensus 113 ~~a~~~Gi~vil~l~ 127 (426)
++|+++||+||+++.
T Consensus 83 ~~~h~~gi~vi~D~V 97 (401)
T PLN02361 83 RKMKQYNVRAMADIV 97 (401)
T ss_pred HHHHHcCCEEEEEEc
Confidence 999999999999974
No 77
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=92.16 E-value=0.34 Score=45.06 Aligned_cols=58 Identities=28% Similarity=0.309 Sum_probs=35.2
Q ss_pred HHHHHHHHhcccccccccccCC---CcEEEEEeccCCCCCCC------C---ChhHHHHHHHHHHHHHHhcCCCCEEE
Q 014373 167 KAHVKTVLNRVNTFTNLTYKND---PTIFAWELMNEPRCTSD------P---SGDTLQSWIQEMAVYVKSIDAKHLVE 232 (426)
Q Consensus 167 ~~~~~~iv~r~n~~tg~~y~~~---p~I~~weL~NEp~~~~~------~---~~~~~~~w~~~~~~~Ir~~dp~~lV~ 232 (426)
.+++..|+++ |++. -.|-.|.|-|||..-.. + +.+.+..-.-+++++||++||+..|+
T Consensus 107 ~ewV~~l~~~--------~g~a~~~~gvk~y~lDNEP~LW~~TH~dVHP~~~t~~El~~r~i~~AkaiK~~DP~a~v~ 176 (239)
T PF12891_consen 107 DEWVNYLVNK--------YGNASTNGGVKYYSLDNEPDLWHSTHRDVHPEPVTYDELRDRSIEYAKAIKAADPDAKVF 176 (239)
T ss_dssp HHHHHHHHHH--------H--TTSTTS--EEEESS-GGGHHHHTTTT--S---HHHHHHHHHHHHHHHHHH-TTSEEE
T ss_pred HHHHHHHHHH--------HhccccCCCceEEEecCchHhhcccccccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEe
Confidence 4556666776 5543 35888999999985321 1 12445555678899999999999874
No 78
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=91.63 E-value=0.65 Score=49.12 Aligned_cols=68 Identities=13% Similarity=0.115 Sum_probs=44.6
Q ss_pred CChHHHHHHHHHHHHCCCCEEEecc-ccCCCc-ccccCC-CCCCChH--HHHHHHHHHHHHHHcCCEEEEecC
Q 014373 60 STRGKVSELFHQASSAGLTVCRTWA-FNDGQW-RALQTS-PSVYDEE--VFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 60 ~~~~~~~~dl~~~~~~G~N~vRi~~-~~~~~~-~~~~~~-~g~~~e~--~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
++-..+.+.|+.++++|+|+|=+-. +..... ..+.+. .-.+++. ..+.|.++|++|+++||+||+++.
T Consensus 25 Gdl~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V 97 (539)
T TIGR02456 25 GDFPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLV 97 (539)
T ss_pred cCHHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 4667888899999999999988732 211100 000000 0012222 257889999999999999999974
No 79
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=91.46 E-value=11 Score=37.62 Aligned_cols=109 Identities=12% Similarity=0.081 Sum_probs=66.4
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCCcc-------cccC-----CCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQWR-------ALQT-----SPSVYDEEVFKALDFVISEAKKYKIRLILSLTN 128 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~-------~~~~-----~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~ 128 (426)
+.+.+.+.++.|+..++|++-+++-.+.+|+ .+.. ..|.|. -+.+..+|+-|+++||.||..+.-
T Consensus 16 ~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT---~~di~eiv~yA~~rgI~vIPEID~ 92 (348)
T cd06562 16 SVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYT---PEDVKEIVEYARLRGIRVIPEIDT 92 (348)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceEC---HHHHHHHHHHHHHcCCEEEEeccC
Confidence 4689999999999999999998654333342 2211 012354 556778999999999999999732
Q ss_pred CcCCCCChhhHHHhhhhcCCC-----------CCCCCCcCCCHHHHHHHHHHHHHHHhc
Q 014373 129 NWDAYGGKAQYVKWGKAAGLN-----------LTSDDEFFSHTTLKSYYKAHVKTVLNR 176 (426)
Q Consensus 129 ~w~~~gg~~~y~~W~~~~g~~-----------~~~~~~~~~~~~~~~~~~~~~~~iv~r 176 (426)
.|.+.....+....+.. .....--.++|++.+..++.++++++-
T Consensus 93 ----PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~vl~E~~~l 147 (348)
T cd06562 93 ----PGHTGSWGQGYPELLTGCYAVWRKYCPEPPCGQLNPTNPKTYDFLKTLFKEVSEL 147 (348)
T ss_pred ----chhhHHHHHhChhhhCCCCccccccccCCCCccccCCChhHHHHHHHHHHHHHHh
Confidence 13222211111000100 000001134688888888888888886
No 80
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=91.39 E-value=9.9 Score=37.93 Aligned_cols=109 Identities=13% Similarity=0.089 Sum_probs=66.6
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCCc-------ccccC---------------------CCCCCChHHHHHHHHHH
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQW-------RALQT---------------------SPSVYDEEVFKALDFVI 112 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~-------~~~~~---------------------~~g~~~e~~l~~lD~~l 112 (426)
+.+.+.+.++.|+..++|++-+++..+.+| |.+.. ..|.|. -+.+..++
T Consensus 16 ~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT---~~di~eiv 92 (357)
T cd06563 16 PVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYT---QEEIREIV 92 (357)
T ss_pred CHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceEC---HHHHHHHH
Confidence 467999999999999999999876443333 22210 013354 55677899
Q ss_pred HHHHHcCCEEEEecCCCcCCCCChhhHHHhhhhcCCCC-----------CCCCCcCCCHHHHHHHHHHHHHHHhc
Q 014373 113 SEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNL-----------TSDDEFFSHTTLKSYYKAHVKTVLNR 176 (426)
Q Consensus 113 ~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~g~~~-----------~~~~~~~~~~~~~~~~~~~~~~iv~r 176 (426)
+.|+++||.||..+.- .|.+.....+....+... ....--.++|++.+..++.++++++-
T Consensus 93 ~yA~~rgI~VIPEID~----PGH~~a~l~~~pel~~~~~~~~~~~~~~~~~~~L~~~~~~t~~f~~~ll~E~~~l 163 (357)
T cd06563 93 AYAAERGITVIPEIDM----PGHALAALAAYPELGCTGGPGSVVSVQGVVSNVLCPGKPETYTFLEDVLDEVAEL 163 (357)
T ss_pred HHHHHcCCEEEEecCC----chhHHHHHHhCccccCCCCCCccccccCcCCCccCCCChhHHHHHHHHHHHHHHh
Confidence 9999999999999732 133322111110000000 00111235688888888888888885
No 81
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=91.33 E-value=0.84 Score=48.39 Aligned_cols=63 Identities=17% Similarity=0.254 Sum_probs=43.9
Q ss_pred CChHHHHHHHHHHHHCCCCEEEeccccC-C----Ccc-----cccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014373 60 STRGKVSELFHQASSAGLTVCRTWAFND-G----QWR-----ALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 60 ~~~~~~~~dl~~~~~~G~N~vRi~~~~~-~----~~~-----~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
++-..+.+.|+.++++|+++|=+-.+.. . +|. .+.+.-| ..+.|+.+|++|+++||+||+++.
T Consensus 30 Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~G-----t~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 30 GDLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYG-----TLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred cCHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCcccC-----CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 3566788889999999999998843211 0 111 1111112 256889999999999999999974
No 82
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=91.28 E-value=0.81 Score=48.42 Aligned_cols=68 Identities=16% Similarity=0.196 Sum_probs=44.0
Q ss_pred CChHHHHHHHHHHHHCCCCEEEecc-ccCCCc-ccccCCC-CCCCh--HHHHHHHHHHHHHHHcCCEEEEecC
Q 014373 60 STRGKVSELFHQASSAGLTVCRTWA-FNDGQW-RALQTSP-SVYDE--EVFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 60 ~~~~~~~~dl~~~~~~G~N~vRi~~-~~~~~~-~~~~~~~-g~~~e--~~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
++...+.+.|+.++++|+|+|=+-. +..... ..+.+.. -.+++ ..++.|..+|++|+++||+||+++.
T Consensus 24 G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 24 GDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred cCHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 3567788899999999999988833 211100 0000000 01111 1357889999999999999999974
No 83
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=91.23 E-value=5.4 Score=45.65 Aligned_cols=151 Identities=20% Similarity=0.331 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHHHCCCCEEEec-ccc----CC-----------------Ccc--c---ccCCCCCCCh------HHHHHH
Q 014373 62 RGKVSELFHQASSAGLTVCRTW-AFN----DG-----------------QWR--A---LQTSPSVYDE------EVFKAL 108 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~-~~~----~~-----------------~~~--~---~~~~~g~~~e------~~l~~l 108 (426)
...+.+.|+.|+++|+|+|=+. +|. +. .|- + +.++ +.|.. ...+.|
T Consensus 479 f~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape-~~Ygtdp~dp~~ri~Ef 557 (1111)
T TIGR02102 479 FAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALS-GMYSEDPKDPELRIAEF 557 (1111)
T ss_pred HHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccc-cccccCCcCccccHHHH
Confidence 4456677999999999999984 231 00 010 0 0111 12211 125778
Q ss_pred HHHHHHHHHcCCEEEEecCCCcCC----CCC-hhhHHHhhhhcCCCCCC--CCCc-CCCHHHHHHHHHHHHHHHhccccc
Q 014373 109 DFVISEAKKYKIRLILSLTNNWDA----YGG-KAQYVKWGKAAGLNLTS--DDEF-FSHTTLKSYYKAHVKTVLNRVNTF 180 (426)
Q Consensus 109 D~~l~~a~~~Gi~vil~l~~~w~~----~gg-~~~y~~W~~~~g~~~~~--~~~~-~~~~~~~~~~~~~~~~iv~r~n~~ 180 (426)
.++|++|+++||+||+++.-+-.. +-+ .+.|-.+....|.+... ..++ ..++.+++.+.+.++..++.
T Consensus 558 K~LV~alH~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~e---- 633 (1111)
T TIGR02102 558 KNLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDE---- 633 (1111)
T ss_pred HHHHHHHHHCCCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHh----
Confidence 999999999999999997432111 000 01110010001110000 0111 23578888899999999987
Q ss_pred ccccccCCCcEEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCEEEec
Q 014373 181 TNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIG 234 (426)
Q Consensus 181 tg~~y~~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~g 234 (426)
|+=+. +=++++.... ..++..+...+++++|+.++ +|
T Consensus 634 ----y~VDG--FRfDl~g~~d----------~~~~~~~~~~l~~~dP~~~l-iG 670 (1111)
T TIGR02102 634 ----FKVDG--FRFDMMGDHD----------AASIEIAYKEAKAINPNIIM-IG 670 (1111)
T ss_pred ----cCCcE--EEEeccccCC----------HHHHHHHHHHHHHhCcCEEE-EE
Confidence 65432 2356664211 23456667778889997544 44
No 84
>PRK09936 hypothetical protein; Provisional
Probab=90.98 E-value=9.3 Score=36.66 Aligned_cols=59 Identities=15% Similarity=0.243 Sum_probs=42.5
Q ss_pred CChHHHHHHHHHHHHCCCCEEEe-ccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC
Q 014373 60 STRGKVSELFHQASSAGLTVCRT-WAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN 128 (426)
Q Consensus 60 ~~~~~~~~dl~~~~~~G~N~vRi-~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~ 128 (426)
.+...+++-+..++..|++++=+ |. .+..++ |... =..|-+.+++|.+.||+|++-|..
T Consensus 35 ~~~~qWq~~~~~~~~~G~~tLivQWt-------~yG~~~--fg~~-~g~La~~l~~A~~~Gl~v~vGL~~ 94 (296)
T PRK09936 35 VTDTQWQGLWSQLRLQGFDTLVVQWT-------RYGDAD--FGGQ-RGWLAKRLAAAQQAGLKLVVGLYA 94 (296)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEee-------eccCCC--cccc-hHHHHHHHHHHHHcCCEEEEcccC
Confidence 46789999999999999999877 32 221111 1111 224568999999999999999853
No 85
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=90.85 E-value=1.6 Score=47.52 Aligned_cols=59 Identities=10% Similarity=0.139 Sum_probs=38.2
Q ss_pred HHHHHHHCCCCEEEecc-ccCC--------------Cccc---ccCCCCCCCh-HHHHHHHHHHHHHHHcCCEEEEecC
Q 014373 68 LFHQASSAGLTVCRTWA-FNDG--------------QWRA---LQTSPSVYDE-EVFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 68 dl~~~~~~G~N~vRi~~-~~~~--------------~~~~---~~~~~g~~~e-~~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
-|+.|+++|+|+|=+-. +... +|.. +.+. +.|.. ...+.|.++|++|+++||+||+++.
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d-~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV 266 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPE-PRYLASGQVAEFKTMVRALHDAGIEVILDVV 266 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccC-hhhcCCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 49999999999998832 2110 0100 0111 11110 1257899999999999999999974
No 86
>PRK03705 glycogen debranching enzyme; Provisional
Probab=90.71 E-value=0.61 Score=50.37 Aligned_cols=108 Identities=15% Similarity=0.209 Sum_probs=58.9
Q ss_pred HHHHHHHCCCCEEEec-cccCC--------------Cccc---ccCCCCCCC---hHHHHHHHHHHHHHHHcCCEEEEec
Q 014373 68 LFHQASSAGLTVCRTW-AFNDG--------------QWRA---LQTSPSVYD---EEVFKALDFVISEAKKYKIRLILSL 126 (426)
Q Consensus 68 dl~~~~~~G~N~vRi~-~~~~~--------------~~~~---~~~~~g~~~---e~~l~~lD~~l~~a~~~Gi~vil~l 126 (426)
.|+.|+++|+|+|=+- ++... +|.. +.+.| .|. +..++.|..+|++|+++||+||+++
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~-~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDP-AYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccc-ccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 4999999999999983 22110 0110 11111 121 1246789999999999999999997
Q ss_pred CCCcCCCCCh-hhHH----------HhhhhcCCCC--C-CCCCc-CCCHHHHHHHHHHHHHHHhc
Q 014373 127 TNNWDAYGGK-AQYV----------KWGKAAGLNL--T-SDDEF-FSHTTLKSYYKAHVKTVLNR 176 (426)
Q Consensus 127 ~~~w~~~gg~-~~y~----------~W~~~~g~~~--~-~~~~~-~~~~~~~~~~~~~~~~iv~r 176 (426)
.-+-...++. ..+. -|....|... + -..++ +.+|.+++.+.+-++..++.
T Consensus 263 V~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l~~W~~e 327 (658)
T PRK03705 263 VFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCLRYWVET 327 (658)
T ss_pred cccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHHHHHHHH
Confidence 4321111000 0000 0111111000 0 00111 35788999999999998887
No 87
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=90.11 E-value=8.5 Score=37.98 Aligned_cols=144 Identities=13% Similarity=0.132 Sum_probs=87.7
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCCc-------ccccC----------CCCCCChHHHHHHHHHHHHHHHcCCEEE
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQW-------RALQT----------SPSVYDEEVFKALDFVISEAKKYKIRLI 123 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~-------~~~~~----------~~g~~~e~~l~~lD~~l~~a~~~Gi~vi 123 (426)
+.+.+.+.++.|+..++|++-+++-.+.+| |.+.. ..|.|. -+.+..+++.|+++||.||
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT---~~di~elv~yA~~rgI~vI 92 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYT---QEDYKDIVAYAAERHITVV 92 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCC---HHHHHHHHHHHHHcCCEEE
Confidence 468999999999999999999866433333 22211 113455 4566789999999999999
Q ss_pred EecCCCcCCCCChhhHHHhh---hhcCCCC--------CCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEE
Q 014373 124 LSLTNNWDAYGGKAQYVKWG---KAAGLNL--------TSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIF 192 (426)
Q Consensus 124 l~l~~~w~~~gg~~~y~~W~---~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~ 192 (426)
..+.- .|.+....... ...+... ....--.++|++.+..++.+++++.- +. .+.|
T Consensus 93 PEiD~----PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~--------f~-~~~i- 158 (329)
T cd06568 93 PEIDM----PGHTNAALAAYPELNCDGKAKPLYTGIEVGFSSLDVDKPTTYEFVDDVFRELAAL--------TP-GPYI- 158 (329)
T ss_pred EecCC----cHHHHHHHHhChhhccCCCCCccccccCCCCcccCCCCHHHHHHHHHHHHHHHHh--------CC-CCeE-
Confidence 99832 12222111100 0001000 00011245788888888888888875 53 3333
Q ss_pred EEEe-ccCCCCCCCCChhHHHHHHHHHHHHHHhcC
Q 014373 193 AWEL-MNEPRCTSDPSGDTLQSWIQEMAVYVKSID 226 (426)
Q Consensus 193 ~weL-~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~d 226 (426)
-| +-|..... .+.+..+++++.+.+++..
T Consensus 159 --HiGgDE~~~~~---~~~~~~f~~~~~~~v~~~G 188 (329)
T cd06568 159 --HIGGDEAHSTP---HDDYAYFVNRVRAIVAKYG 188 (329)
T ss_pred --EEecccCCCCc---hHHHHHHHHHHHHHHHHCC
Confidence 33 34554321 3567788999999998765
No 88
>PRK09505 malS alpha-amylase; Reviewed
Probab=90.06 E-value=1.3 Score=47.98 Aligned_cols=67 Identities=15% Similarity=0.215 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHHHHCCCCEEEecc-ccC-------C--------CcccccCC-CCCCChH--HHHHHHHHHHHHHHcCCE
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWA-FND-------G--------QWRALQTS-PSVYDEE--VFKALDFVISEAKKYKIR 121 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~-~~~-------~--------~~~~~~~~-~g~~~e~--~l~~lD~~l~~a~~~Gi~ 121 (426)
+..-+.+-|+.++++|+|+|=|-. +.. + .++.+.+. .-.+|+. ..+.|+.+|++|+++||+
T Consensus 228 dl~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~ 307 (683)
T PRK09505 228 DLRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIR 307 (683)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCE
Confidence 345578889999999999987732 211 0 01111000 0112222 367889999999999999
Q ss_pred EEEecC
Q 014373 122 LILSLT 127 (426)
Q Consensus 122 vil~l~ 127 (426)
||+++.
T Consensus 308 VilD~V 313 (683)
T PRK09505 308 ILFDVV 313 (683)
T ss_pred EEEEEC
Confidence 999974
No 89
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=89.84 E-value=1 Score=46.90 Aligned_cols=66 Identities=11% Similarity=0.059 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHCCCCEEEecc-ccCC--C-cccccCC----------CCCCChH--HHHHHHHHHHHHHHcCCEEEEe
Q 014373 62 RGKVSELFHQASSAGLTVCRTWA-FNDG--Q-WRALQTS----------PSVYDEE--VFKALDFVISEAKKYKIRLILS 125 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~-~~~~--~-~~~~~~~----------~g~~~e~--~l~~lD~~l~~a~~~Gi~vil~ 125 (426)
...+.+-|+.|+++|+|+|=|-. +... . +..+.+. +|.+++. ..+.|..+|++|+++||+||++
T Consensus 21 ~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~D 100 (479)
T PRK09441 21 WNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYAD 100 (479)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEEE
Confidence 35688889999999999887732 2110 0 1111111 1122222 3667889999999999999999
Q ss_pred cC
Q 014373 126 LT 127 (426)
Q Consensus 126 l~ 127 (426)
+.
T Consensus 101 ~V 102 (479)
T PRK09441 101 VV 102 (479)
T ss_pred EC
Confidence 74
No 90
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=89.77 E-value=1.5 Score=42.08 Aligned_cols=128 Identities=14% Similarity=0.170 Sum_probs=70.6
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCc-CCCCChhhH
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNW-DAYGGKAQY 139 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w-~~~gg~~~y 139 (426)
+.+++.+.-+.+++.|+|.|=+--.+ ..+-.+.++.++.+-++-+..+.+||+|.|++.-.- ...||.+.
T Consensus 55 ~~~R~~~YARllASiGINgvvlNNVN--------a~~~~Lt~~~l~~v~~lAdvfRpYGIkv~LSvnFasP~~lggL~T- 125 (328)
T PF07488_consen 55 DLTRYRDYARLLASIGINGVVLNNVN--------ANPKLLTPEYLDKVARLADVFRPYGIKVYLSVNFASPIELGGLPT- 125 (328)
T ss_dssp --HHHHHHHHHHHHTT--EEE-S-SS----------CGGGSTTTHHHHHHHHHHHHHTT-EEEEEE-TTHHHHTTS-S--
T ss_pred chhHHHHHHHHHhhcCCceEEecccc--------cChhhcCHHHHHHHHHHHHHHhhcCCEEEEEeeccCCcccCCcCc-
Confidence 45799999999999999998873221 112334567799999999999999999999983110 01122211
Q ss_pred HHhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEec----cCCCCCCCCChhHHHHHH
Q 014373 140 VKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELM----NEPRCTSDPSGDTLQSWI 215 (426)
Q Consensus 140 ~~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~----NEp~~~~~~~~~~~~~w~ 215 (426)
.+ --||++++.+++-+++|-++ -|.+-++-+- .+|..... +....+=.
T Consensus 126 --------------aD-Pld~~V~~WW~~k~~eIY~~-----------IPDfgGflVKAdSEGqPGP~~Y--gRthAdGA 177 (328)
T PF07488_consen 126 --------------AD-PLDPEVRQWWKDKADEIYSA-----------IPDFGGFLVKADSEGQPGPFTY--GRTHADGA 177 (328)
T ss_dssp -----------------TTSHHHHHHHHHHHHHHHHH------------TT--EEEE--SBTTB--GGGG--T--HHHHH
T ss_pred --------------CC-CCCHHHHHHHHHHHHHHHHh-----------CCCccceEEEecCCCCCCCccc--CCCchhhH
Confidence 11 23788988888888888666 3445555552 33433221 22233333
Q ss_pred HHHHHHHHhc
Q 014373 216 QEMAVYVKSI 225 (426)
Q Consensus 216 ~~~~~~Ir~~ 225 (426)
+.++++++-.
T Consensus 178 NmlA~Al~P~ 187 (328)
T PF07488_consen 178 NMLARALKPH 187 (328)
T ss_dssp HHHHHHHGGG
T ss_pred HHHHHHhhcc
Confidence 5566666554
No 91
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=89.61 E-value=5.7 Score=44.43 Aligned_cols=111 Identities=15% Similarity=0.268 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEecCCCcCCCCC------hhhHHH-hhh---hcCCCCCCC---CCc-CCCHHHHHHHHHHH
Q 014373 105 FKALDFVISEAKKYKIRLILSLTNNWDAYGG------KAQYVK-WGK---AAGLNLTSD---DEF-FSHTTLKSYYKAHV 170 (426)
Q Consensus 105 l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg------~~~y~~-W~~---~~g~~~~~~---~~~-~~~~~~~~~~~~~~ 170 (426)
...|.++|++|+++||+||+++.-+-...+| .+.+++ |.. ..| ...+. .++ ..++.+++.+.+.+
T Consensus 403 i~Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G-~~~n~~~~~d~a~e~~~Vrk~iiDsl 481 (898)
T TIGR02103 403 IKEFREMVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDG-GVENSTCCSNTATEHRMMAKLIVDSL 481 (898)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeecccccccCccCcccccccCcHhhEeeCCCC-CeecCCCCcCCCCCCHHHHHHHHHHH
Confidence 5678899999999999999997533211111 111111 110 011 11000 111 23578888999999
Q ss_pred HHHHhcccccccccccCCCcEEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCEEEeccccc
Q 014373 171 KTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGF 238 (426)
Q Consensus 171 ~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~g~~g~ 238 (426)
+..++. |+=+. +=++++.... ..+++++.+++|+++|+.. .+| |+|
T Consensus 482 ~~W~~e--------y~VDG--FRfDlm~~~~----------~~f~~~~~~~l~~i~pdi~-l~G-EgW 527 (898)
T TIGR02103 482 VVWAKD--------YKVDG--FRFDLMGHHP----------KAQMLAAREAIKALTPEIY-FYG-EGW 527 (898)
T ss_pred HHHHHH--------cCCCE--EEEechhhCC----------HHHHHHHHHHHHHhCCCEE-EEe-cCC
Confidence 998887 76432 2367765442 3466888889999999854 355 354
No 92
>PLN02877 alpha-amylase/limit dextrinase
Probab=89.35 E-value=11 Score=42.36 Aligned_cols=119 Identities=15% Similarity=0.241 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHcCCEEEEecCCCcCCCCC-------hhhHHH-h---hhhcCCCCCCC---CCc-CCCHHHHHHHHHH
Q 014373 105 FKALDFVISEAKKYKIRLILSLTNNWDAYGG-------KAQYVK-W---GKAAGLNLTSD---DEF-FSHTTLKSYYKAH 169 (426)
Q Consensus 105 l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg-------~~~y~~-W---~~~~g~~~~~~---~~~-~~~~~~~~~~~~~ 169 (426)
...|.++|+.|+++||+||+++..+-..-+| .+.++. | ....| ...+. .+. -.++.+++.+.+-
T Consensus 465 I~efk~mV~~lH~~GI~VImDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G-~~~ns~c~n~~Ase~~mvrklIlDs 543 (970)
T PLN02877 465 IIEFRKMVQALNRIGLRVVLDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDG-FIENSTCVNNTASEHYMVDRLIVDD 543 (970)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCccccCCCCcchhhcccCCCCCceEEECCCC-CcccCCccCCCccCCHHHHHHHHHH
Confidence 4568999999999999999997433211111 011000 1 01111 11110 011 1235677888888
Q ss_pred HHHHHhcccccccccccCCCcEEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCEEEeccccc
Q 014373 170 VKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGF 238 (426)
Q Consensus 170 ~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~g~~g~ 238 (426)
++..++. |+=+. +=++|+..-.... -..+.+.++++...++..|...++.+| |||
T Consensus 544 l~yW~~e--------y~VDG--FRFDlmg~i~~~t---m~~~~~~L~~i~~~~~~~dg~~i~lyG-EgW 598 (970)
T PLN02877 544 LLNWAVN--------YKVDG--FRFDLMGHLMKRT---MVRAKDALQSLTLERDGVDGSSIYLYG-EGW 598 (970)
T ss_pred HHHHHHH--------hCCCE--EEEEccccccHHH---HHHHHHHHHHHhhhhcccCCCceEEEE-eCC
Confidence 8888887 76442 3478887764321 123444455555555555644455566 465
No 93
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=89.33 E-value=2 Score=42.53 Aligned_cols=148 Identities=18% Similarity=0.173 Sum_probs=85.0
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCCcc-------cccCCCC---------CCChHHHHHHHHHHHHHHHcCCEEEE
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQWR-------ALQTSPS---------VYDEEVFKALDFVISEAKKYKIRLIL 124 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~-------~~~~~~g---------~~~e~~l~~lD~~l~~a~~~Gi~vil 124 (426)
+.+.+.+.|+.|+..++|++-++...+..|+ .+. ..| .|. -+.+..+++.|+++||.||.
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~-~~ga~~~~~~~~~yT---~~di~~lv~yA~~~gI~VIP 91 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELT-EKGAYRPSDAGGYYT---KEDIRELVAYAKERGIEVIP 91 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHH-HTTTESTTCTESEBE---HHHHHHHHHHHHHTT-EEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCcccc-ccCccccccccccCC---HHHHHHHHHHHHHcCCceee
Confidence 4678999999999999999998664432332 111 112 344 45677899999999999999
Q ss_pred ecCCCcCCCCChhhHHHhhhhcCCC---C------C---C---CCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCC
Q 014373 125 SLTNNWDAYGGKAQYVKWGKAAGLN---L------T---S---DDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDP 189 (426)
Q Consensus 125 ~l~~~w~~~gg~~~y~~W~~~~g~~---~------~---~---~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p 189 (426)
.+.- .|.+.....+....+.. . . . ..--.++|++.+..++.++++++- +. .+
T Consensus 92 eid~----PGH~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~--------f~-~~ 158 (351)
T PF00728_consen 92 EIDT----PGHAEAWLKAYPELGCSAWPEDKSWPNSTCWYPDNGVLDPSNPETYEFLKDLLDEVADL--------FP-SK 158 (351)
T ss_dssp EEEE----SSS-HHHHHHHHHHCCCHTTCSSSCEEEETTSEEEEEE-TTSHHHHHHHHHHHHHHHHH--------HT-SS
T ss_pred eccC----chHHHHHHHhCchhhccccccccccccccccCCCcccCCCCcHHHHHHHHHHHHHHHhh--------CC-CC
Confidence 9732 24443322221111110 0 0 0 011245788999999999999987 44 33
Q ss_pred cEEEEEe-ccCCCCCCCCC----------------hhHHHHHHHHHHHHHHhcCCC
Q 014373 190 TIFAWEL-MNEPRCTSDPS----------------GDTLQSWIQEMAVYVKSIDAK 228 (426)
Q Consensus 190 ~I~~weL-~NEp~~~~~~~----------------~~~~~~w~~~~~~~Ir~~dp~ 228 (426)
.| -| +-|........ .+.+..+++++.+.+++....
T Consensus 159 ~i---HiGgDEv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~v~~~g~~ 211 (351)
T PF00728_consen 159 YI---HIGGDEVNYNCWNNSPECQAWMKQNGLTDPNDLFQYFVNRLADIVKKHGKK 211 (351)
T ss_dssp EE---EEE-TSTTTHHHHCHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHTTSE
T ss_pred eE---EeCCcccccccccCCHHHhhHHhhcCCchHHHHHHHHHHHHHHHHHhcCCc
Confidence 33 34 45554210000 123445678888999987665
No 94
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=89.01 E-value=1.5 Score=50.51 Aligned_cols=97 Identities=7% Similarity=0.052 Sum_probs=61.1
Q ss_pred cEEEeCCeEEECC-eEEEEEEeeccch-hhhccCCCChHHHHHHHHHHHHCCCCEEEecc-ccCCC----cc---cccCC
Q 014373 27 MVQKQGNQFVVND-QPFYVNGFNTYWL-MVFAADQSTRGKVSELFHQASSAGLTVCRTWA-FNDGQ----WR---ALQTS 96 (426)
Q Consensus 27 fv~~~g~~f~~~G-~~~~~~G~N~~~~-~~~~~~~~~~~~~~~dl~~~~~~G~N~vRi~~-~~~~~----~~---~~~~~ 96 (426)
++.|. -.|.+|| +..-+-|+++.-. ... -+.-..|++.|+.++++|.|+|-+-. +..+. |. .++-.
T Consensus 98 y~~V~-P~L~i~~~~~lPl~~i~iqTvlsK~---mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~id 173 (1464)
T TIGR01531 98 YFVVL-PMLYINADKFLPLDSIALQTVLAKL---LGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLN 173 (1464)
T ss_pred EEEeC-CeeEECCCcccCcCceeeeeehhhh---cCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcC
Confidence 44444 5677888 8888888886411 111 01247899999999999999999843 31111 11 01111
Q ss_pred CCCC-ChHHHHHHHHHHHHHHHc-CCEEEEecC
Q 014373 97 PSVY-DEEVFKALDFVISEAKKY-KIRLILSLT 127 (426)
Q Consensus 97 ~g~~-~e~~l~~lD~~l~~a~~~-Gi~vil~l~ 127 (426)
|--+ .+...+.+.++|+.|++. ||++|+++.
T Consensus 174 P~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDvV 206 (1464)
T TIGR01531 174 QHFKSQKDGKNDVQALVEKLHRDWNVLSITDIV 206 (1464)
T ss_pred hhhcccCCcHHHHHHHHHHHHHhcCCEEEEEee
Confidence 1101 013457789999999995 999999974
No 95
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=88.66 E-value=2.8 Score=46.49 Aligned_cols=68 Identities=15% Similarity=0.109 Sum_probs=45.0
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccC---CCccccc-CCCCCCChH--HHHHHHHHHHHHHHcCCEEEEecCC
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFND---GQWRALQ-TSPSVYDEE--VFKALDFVISEAKKYKIRLILSLTN 128 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~---~~~~~~~-~~~g~~~e~--~l~~lD~~l~~a~~~Gi~vil~l~~ 128 (426)
+-..+.+.+..++++|+|+|=+..+.. +....+. .....+|++ ..+.|..++++|+++||+||+++.-
T Consensus 18 tf~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~ 91 (879)
T PRK14511 18 TFDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVP 91 (879)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 457899999999999999998743211 1100000 001112221 3577899999999999999999853
No 96
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=88.55 E-value=11 Score=38.10 Aligned_cols=133 Identities=17% Similarity=0.217 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHCCCCEEEecc-ccCC--Ccc-------cccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCC
Q 014373 63 GKVSELFHQASSAGLTVCRTWA-FNDG--QWR-------ALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDA 132 (426)
Q Consensus 63 ~~~~~dl~~~~~~G~N~vRi~~-~~~~--~~~-------~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~ 132 (426)
-+.++..+.+|++|++.|=+-. +.++ .|+ .....| .-+-+..+.++|+++||++-+.+.. ++.
T Consensus 81 fD~~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~p------krDiv~el~~A~rk~Glk~G~Y~S~-~DW 153 (384)
T smart00812 81 FDPEEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGP------KRDLVGELADAVRKRGLKFGLYHSL-FDW 153 (384)
T ss_pred CCHHHHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCC------CcchHHHHHHHHHHcCCeEEEEcCH-HHh
Confidence 3557889999999999887732 2222 122 111111 2356778999999999999997532 211
Q ss_pred CCChhhHHHhhhhcCCCCCCCCCcCCCHHHHHHH---HHHHHHHHhcccccccccccCCCcEEEEEeccCCCCCCCCChh
Q 014373 133 YGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYY---KAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGD 209 (426)
Q Consensus 133 ~gg~~~y~~W~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~~~~~ 209 (426)
.. +.|..- .. ...+-.+.+...+.+ ...+++|+++ |+. .++=++...+-.. .
T Consensus 154 ~~--p~y~~~---~~----~~~~~~~~~~~~~y~~~~~~Ql~ELit~--------Ygp--d~lWfD~~~~~~~------~ 208 (384)
T smart00812 154 FN--PLYAGP---TS----SDEDPDNWPRFQEFVDDWLPQLRELVTR--------YKP--DLLWFDGGWEAPD------D 208 (384)
T ss_pred CC--Cccccc---cc----cccccccchhHHHHHHHHHHHHHHHHhc--------CCC--ceEEEeCCCCCcc------c
Confidence 10 111100 00 000111223334444 8999999999 975 6665665433111 1
Q ss_pred HHHHHHHHHHHHHHhcCCCC
Q 014373 210 TLQSWIQEMAVYVKSIDAKH 229 (426)
Q Consensus 210 ~~~~w~~~~~~~Ir~~dp~~ 229 (426)
.. -..++.+.||++.|+.
T Consensus 209 -~~-~~~~l~~~~~~~qP~~ 226 (384)
T smart00812 209 -YW-RSKEFLAWLYNLSPVK 226 (384)
T ss_pred -hh-cHHHHHHHHHHhCCCC
Confidence 11 2477899999999987
No 97
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=88.35 E-value=11 Score=36.84 Aligned_cols=114 Identities=16% Similarity=0.127 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhHHHhh
Q 014373 64 KVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWG 143 (426)
Q Consensus 64 ~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~ 143 (426)
--.+..+.+++.|+..||++-- ++ .+|.+..--||.|++.+.|. +. ..-
T Consensus 14 ~p~~vv~l~ks~~i~~vri~d~---------------~~-------~iL~a~a~S~i~v~v~vpN~-------~l-~~l- 62 (310)
T PF00332_consen 14 SPCKVVSLLKSNGITKVRIYDA---------------DP-------SILRAFAGSGIEVMVGVPNE-------DL-ASL- 62 (310)
T ss_dssp -HHHHHHHHHHTT--EEEESS-----------------H-------HHHHHHTTS--EEEEEE-GG-------GH-HHH-
T ss_pred CHHHHHHHHHhcccccEEeecC---------------cH-------HHHHHHhcCCceeeeccChH-------HH-HHh-
Confidence 3455666778999999999521 11 56677778999999998642 00 000
Q ss_pred hhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCCCCCChhHHHHHHHHHHHHHH
Q 014373 144 KAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVK 223 (426)
Q Consensus 144 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir 223 (426)
...+.....+++.=+.. |...-.|....++||.-.... ...+..-++.+..+++
T Consensus 63 ----------------a~~~~~A~~Wv~~nv~~--------~~~~~~i~~i~VGnEv~~~~~--~~~lvpAm~ni~~aL~ 116 (310)
T PF00332_consen 63 ----------------ASSQSAAGSWVRTNVLP--------YLPAVNIRYIAVGNEVLTGTD--NAYLVPAMQNIHNALT 116 (310)
T ss_dssp ----------------HHHHHHHHHHHHHHTCT--------CTTTSEEEEEEEEES-TCCSG--GGGHHHHHHHHHHHHH
T ss_pred ----------------ccCHHHHhhhhhhcccc--------cCcccceeeeecccccccCcc--ceeeccHHHHHHHHHH
Confidence 11223444555554444 555455777889999876532 1235555566677776
Q ss_pred hc--CCCCEEEec
Q 014373 224 SI--DAKHLVEIG 234 (426)
Q Consensus 224 ~~--dp~~lV~~g 234 (426)
+. +....|+..
T Consensus 117 ~~~L~~~IkVst~ 129 (310)
T PF00332_consen 117 AAGLSDQIKVSTP 129 (310)
T ss_dssp HTT-TTTSEEEEE
T ss_pred hcCcCCcceeccc
Confidence 54 444556554
No 98
>PLN02784 alpha-amylase
Probab=88.17 E-value=3.1 Score=45.83 Aligned_cols=115 Identities=10% Similarity=0.031 Sum_probs=66.3
Q ss_pred CccchhcccccccCCCCCcEEEeC---C--eE---EECCeEEEEEEeeccchhhhccCCCChHHHHHHHHHHHHCCCCEE
Q 014373 9 PSLQRIYDLQVREDDDWQMVQKQG---N--QF---VVNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVC 80 (426)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~fv~~~g---~--~f---~~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~N~v 80 (426)
.+.+++|..++.+....+++...- - ++ .-+|..+.+-|+|- ..... ..-...+.+.++.|+++|+++|
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVmlQgF~W-ds~~d---g~w~~~I~ekldyL~~LG~taI 538 (894)
T PLN02784 463 AEAYSIFRSTIPTFSEESVLEAERIQKPPIKICSGTGSGFEILCQGFNW-ESHKS---GRWYMELGEKAAELSSLGFTVV 538 (894)
T ss_pred hhhheeeccCCCCcChhhhhcchhhcCCcccccccccCCceEEEEeEEc-CcCCC---CchHHHHHHHHHHHHHhCCCEE
Confidence 355666665555444455544321 1 12 24677888899982 11111 1114578889999999999998
Q ss_pred EeccccCCC-cccccCCC-CCCChH--HHHHHHHHHHHHHHcCCEEEEecC
Q 014373 81 RTWAFNDGQ-WRALQTSP-SVYDEE--VFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 81 Ri~~~~~~~-~~~~~~~~-g~~~e~--~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
=+....... ...+.+.. -.+++. ..+.|..+|++|+++||+||+++.
T Consensus 539 WLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiV 589 (894)
T PLN02784 539 WLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAV 589 (894)
T ss_pred EeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 884321110 00011100 001111 245788999999999999999964
No 99
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=88.17 E-value=12 Score=36.55 Aligned_cols=63 Identities=21% Similarity=0.247 Sum_probs=46.3
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCCcc-------cccC--C-CCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQWR-------ALQT--S-PSVYDEEVFKALDFVISEAKKYKIRLILSL 126 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~-------~~~~--~-~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l 126 (426)
+.+.+.+.|+.|+..++|++-+++-.+.+|+ .+.. + .|.|. -+.+..+++.|+++||.||..+
T Consensus 16 ~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT---~~di~elv~yA~~rgI~vIPEI 88 (311)
T cd06570 16 PVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYT---QEQIREVVAYARDRGIRVVPEI 88 (311)
T ss_pred CHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccC---HHHHHHHHHHHHHcCCEEEEee
Confidence 3689999999999999999998654433342 2210 1 12465 4456789999999999999997
No 100
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=87.89 E-value=2.9 Score=41.00 Aligned_cols=151 Identities=11% Similarity=0.154 Sum_probs=79.3
Q ss_pred CChHHHHHHHHHHHHCCCCEEEeccccC--------------CC------------cccccC-------CCCCCChHHHH
Q 014373 60 STRGKVSELFHQASSAGLTVCRTWAFND--------------GQ------------WRALQT-------SPSVYDEEVFK 106 (426)
Q Consensus 60 ~~~~~~~~dl~~~~~~G~N~vRi~~~~~--------------~~------------~~~~~~-------~~g~~~e~~l~ 106 (426)
++.+++|+.|+.|+=.|+|..=.++-.+ .+ |..++. -|-.+-++..+
T Consensus 16 WdW~rWEreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~~~q~~ 95 (333)
T PF05089_consen 16 WDWERWEREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWIDQQAE 95 (333)
T ss_dssp --HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHHHHHHH
Confidence 4679999999999999999876643110 00 211111 11122234444
Q ss_pred HHHHHHHHHHHcCCEEEEecCCCcCCCCChhh-----H--------HHhhhhcCCCCCCCCCc--CCCHHHHHHHHHHHH
Q 014373 107 ALDFVISEAKKYKIRLILSLTNNWDAYGGKAQ-----Y--------VKWGKAAGLNLTSDDEF--FSHTTLKSYYKAHVK 171 (426)
Q Consensus 107 ~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~-----y--------~~W~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~ 171 (426)
.=.++++.+++.||.+|+.=+. |..|. | ..|.+-. ...| -+||-..+.-+.+++
T Consensus 96 Lq~kIl~RmreLGm~PVLPaF~-----G~VP~~~~~~~P~a~i~~~~~W~~f~------~~~~L~P~dplF~~i~~~F~~ 164 (333)
T PF05089_consen 96 LQKKILDRMRELGMTPVLPAFA-----GHVPRAFKRKYPNANITRQGNWNGFC------RPYFLDPTDPLFAEIAKLFYE 164 (333)
T ss_dssp HHHHHHHHHHHHT-EEEEE--S------EE-TTHHHHSTT--EE---EETTEE--------EEE-SS--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccCCCcC-----CCCChHHHhcCCCCEEeeCCCcCCCC------CCceeCCCCchHHHHHHHHHH
Confidence 4568999999999999998432 11111 1 0121100 0011 235667777788888
Q ss_pred HHHhcccccccccccCCCcEEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCEE
Q 014373 172 TVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLV 231 (426)
Q Consensus 172 ~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV 231 (426)
+..+. |+ ...+.+-++.||-..... ..+.+.+-.+.+.+.+++.||+..-
T Consensus 165 ~q~~~--------yG-~~~~Y~~D~FnE~~p~~~-~~~~l~~~s~~v~~am~~~dp~AvW 214 (333)
T PF05089_consen 165 EQIKL--------YG-TDHIYAADPFNEGGPPSG-DPEYLANVSKAVYKAMQAADPDAVW 214 (333)
T ss_dssp HHHHH--------H----SEEE--TTTTS---TT-S---HHHHHHHHHHHHHHH-TT-EE
T ss_pred HHHHh--------cC-CCceeCCCccCCCCCCCC-chHHHHHHHHHHHHHHHhhCCCcEE
Confidence 88888 88 567999999999987653 1234777788899999999999854
No 101
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=87.68 E-value=11 Score=35.52 Aligned_cols=94 Identities=12% Similarity=0.130 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhHHHhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccc
Q 014373 106 KALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTY 185 (426)
Q Consensus 106 ~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y 185 (426)
..++.++..|+++|++|++.+.. |.. +. ......+++.++.|.+-+..++++ |
T Consensus 46 ~~~~~~~~~~~~~~~kvl~sigg-~~~----~~--------------~~~~~~~~~~r~~fi~~lv~~~~~--------~ 98 (253)
T cd06545 46 SELNSVVNAAHAHNVKILISLAG-GSP----PE--------------FTAALNDPAKRKALVDKIINYVVS--------Y 98 (253)
T ss_pred HHHHHHHHHHHhCCCEEEEEEcC-CCC----Cc--------------chhhhcCHHHHHHHHHHHHHHHHH--------h
Confidence 45678899999999999998843 211 00 011356788899888888888887 6
Q ss_pred cCCCcEEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCEEEecc
Q 014373 186 KNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIGL 235 (426)
Q Consensus 186 ~~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~g~ 235 (426)
+=+.--+-||-.... .+.+..+++++.+.+++. +.++++..
T Consensus 99 ~~DGIdiDwE~~~~~-------~~~~~~fv~~Lr~~l~~~--~~~lt~av 139 (253)
T cd06545 99 NLDGIDVDLEGPDVT-------FGDYLVFIRALYAALKKE--GKLLTAAV 139 (253)
T ss_pred CCCceeEEeeccCcc-------HhHHHHHHHHHHHHHhhc--CcEEEEEc
Confidence 655555556543211 356788888888888754 34566543
No 102
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=87.62 E-value=2.4 Score=46.69 Aligned_cols=67 Identities=16% Similarity=0.140 Sum_probs=44.5
Q ss_pred ChHHHHHHHHHHHHCCCCEEEecc-cc--CCCccccc-CCCCCCChH--HHHHHHHHHHHHHHcCCEEEEecC
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWA-FN--DGQWRALQ-TSPSVYDEE--VFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~-~~--~~~~~~~~-~~~g~~~e~--~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
+-..+.+.|+.++++|+++|=+-. +. .+....+. .....+|++ ..+.|..++++|+++||+||+++.
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiV 86 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIV 86 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 457899999999999999997732 21 11100010 011112221 367789999999999999999974
No 103
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=86.62 E-value=4 Score=48.46 Aligned_cols=69 Identities=12% Similarity=0.132 Sum_probs=45.4
Q ss_pred ChHHHHHHHHHHHHCCCCEEEecc-cc--CCCccccc-CCCCCCChH--HHHHHHHHHHHHHHcCCEEEEecCCC
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWA-FN--DGQWRALQ-TSPSVYDEE--VFKALDFVISEAKKYKIRLILSLTNN 129 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~-~~--~~~~~~~~-~~~g~~~e~--~l~~lD~~l~~a~~~Gi~vil~l~~~ 129 (426)
+-+.+.+.|+.++++|+|+|=+-. |. .+....+. .....+|++ ..+.|++++++|+++||+||+++.-+
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~N 830 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVPN 830 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 457899999999999999987732 21 01100000 001112222 36778999999999999999998543
No 104
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=86.30 E-value=22 Score=34.82 Aligned_cols=70 Identities=16% Similarity=0.258 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCEEE
Q 014373 158 SHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVE 232 (426)
Q Consensus 158 ~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~ 232 (426)
.+++.++.+.++++.++++ -|.|+ |=| ++=+++..++.........+...+++.++++++|+..|+.+|.
T Consensus 141 ~~~~W~~il~~rl~~l~~k--GfDGv-fLD--~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II 210 (315)
T TIGR01370 141 WDPEWKAIAFSYLDRVIAQ--GFDGV-YLD--LIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNPQFVII 210 (315)
T ss_pred ccHHHHHHHHHHHHHHHHc--CCCeE-eec--cchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 4678888888888888776 56665 333 4556777776543222223567889999999999999997664
No 105
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=86.15 E-value=2.4 Score=42.02 Aligned_cols=95 Identities=15% Similarity=0.226 Sum_probs=64.5
Q ss_pred HHHHHHHHcCCEEEEecCCCcCCCCChhhHHHhhhhcCCCCCCCCCcCCC-HHHHHHHHHHHHHHHhcccccccccccCC
Q 014373 110 FVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSH-TTLKSYYKAHVKTVLNRVNTFTNLTYKND 188 (426)
Q Consensus 110 ~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~iv~r~n~~tg~~y~~~ 188 (426)
.++++|+|+|++|+-+++..|. ++. .|.. .+..+ ++.+..+.+.+-.|++. |+=+
T Consensus 50 ~~idaAHknGV~Vlgti~~e~~--~~~----~~~~----------~lL~~~~~~~~~~a~kLv~lak~--------yGfD 105 (339)
T cd06547 50 DWINAAHRNGVPVLGTFIFEWT--GQV----EWLE----------DFLKKDEDGSFPVADKLVEVAKY--------YGFD 105 (339)
T ss_pred HHHHHHHhcCCeEEEEEEecCC--Cch----HHHH----------HHhccCcccchHHHHHHHHHHHH--------hCCC
Confidence 4778999999999999877654 222 1221 23444 66777888888888887 7655
Q ss_pred CcEEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCEEE
Q 014373 189 PTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVE 232 (426)
Q Consensus 189 p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~ 232 (426)
. |.|-=|-........+.+.+|++++.+.+++..|+..|.
T Consensus 106 G----w~iN~E~~~~~~~~~~~l~~F~~~L~~~~~~~~~~~~v~ 145 (339)
T cd06547 106 G----WLINIETELGDAEKAKRLIAFLRYLKAKLHENVPGSLVI 145 (339)
T ss_pred c----eEeeeeccCCcHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Confidence 4 333333322111224779999999999999999887774
No 106
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=86.10 E-value=19 Score=36.50 Aligned_cols=171 Identities=15% Similarity=0.204 Sum_probs=89.2
Q ss_pred EEEEEeeccchhhhccCCCChHHHHHHHHHHHHCCCCEEEeccccCCCccc-----------ccCCCCCCChHHHHHHHH
Q 014373 42 FYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRA-----------LQTSPSVYDEEVFKALDF 110 (426)
Q Consensus 42 ~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~-----------~~~~~g~~~e~~l~~lD~ 110 (426)
..+.|.|.|+..... .+.+.+.+.++.++++|++.+=| .+ +|.. ..+.+.+|. ..|..
T Consensus 40 ~~pv~~nsW~~~~~d---~~e~~i~~~a~~~~~~G~e~fvi---DD-GW~~~r~~d~~~~GdW~~~~~kFP----~Gl~~ 108 (394)
T PF02065_consen 40 PPPVGWNSWEAYYFD---ITEEKILELADAAAELGYEYFVI---DD-GWFGGRDDDNAGLGDWEPDPKKFP----NGLKP 108 (394)
T ss_dssp S--EEEESHHHHTTG-----HHHHHHHHHHHHHHT-SEEEE----S-SSBCTESTTTSTTSBECBBTTTST----THHHH
T ss_pred CCceEEEcccccCcC---CCHHHHHHHHHHHHHhCCEEEEE---cC-ccccccCCCcccCCceeEChhhhC----CcHHH
Confidence 356789987543332 25789999999999999996655 22 2421 122333332 34788
Q ss_pred HHHHHHHcCCEEEEecCCCc--CCCCChhhHHHhhhhc-CCCCCCCC----CcCCCHHHHHHHHHHHHHHHhcccccccc
Q 014373 111 VISEAKKYKIRLILSLTNNW--DAYGGKAQYVKWGKAA-GLNLTSDD----EFFSHTTLKSYYKAHVKTVLNRVNTFTNL 183 (426)
Q Consensus 111 ~l~~a~~~Gi~vil~l~~~w--~~~gg~~~y~~W~~~~-g~~~~~~~----~~~~~~~~~~~~~~~~~~iv~r~n~~tg~ 183 (426)
+++.+++.||+.-|=+--.- .+..-...+++|.... +.+..... --+++|++++...+.+..+++.
T Consensus 109 l~~~i~~~Gmk~GlW~ePe~v~~~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~------- 181 (394)
T PF02065_consen 109 LADYIHSLGMKFGLWFEPEMVSPDSDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLRE------- 181 (394)
T ss_dssp HHHHHHHTT-EEEEEEETTEEESSSCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHCCCeEEEEeccccccchhHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHh-------
Confidence 99999999999966541000 0000001234554221 11100111 1157899999999999888876
Q ss_pred cccCCCcEEEEEeccCCCCCCCCC-hhHHHHH---HHHHHHHHHhcCCCCEEEe
Q 014373 184 TYKNDPTIFAWELMNEPRCTSDPS-GDTLQSW---IQEMAVYVKSIDAKHLVEI 233 (426)
Q Consensus 184 ~y~~~p~I~~weL~NEp~~~~~~~-~~~~~~w---~~~~~~~Ir~~dp~~lV~~ 233 (426)
++= .-+=|+..-......... ++...+. +-++.+.||+.-|+.+|-.
T Consensus 182 -~gi--dYiK~D~n~~~~~~~~~~~~~~~~~~~~~~y~l~~~L~~~~P~v~iE~ 232 (394)
T PF02065_consen 182 -WGI--DYIKWDFNRDITEAGSPSLPEGYHRYVLGLYRLLDRLRARFPDVLIEN 232 (394)
T ss_dssp -TT---SEEEEE-TS-TTS-SSTTS-GHHHHHHHHHHHHHHHHHHHTTTSEEEE
T ss_pred -cCC--CEEEeccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCcEEEe
Confidence 321 122366533332222111 1223332 3367888899999988854
No 107
>PLN00196 alpha-amylase; Provisional
Probab=85.94 E-value=2.9 Score=42.85 Aligned_cols=67 Identities=10% Similarity=-0.008 Sum_probs=42.8
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCC-CcccccCCC-CCCCh---HHHHHHHHHHHHHHHcCCEEEEecC
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDG-QWRALQTSP-SVYDE---EVFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~-~~~~~~~~~-g~~~e---~~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
....+.+.|+.|+++|+++|=+...... ....+.+.. -.+++ ...+.|..+|++|+++||+||+++.
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV 113 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIV 113 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 3567889999999999998887432111 111111100 01111 1245788999999999999999963
No 108
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=85.56 E-value=7.1 Score=38.09 Aligned_cols=93 Identities=12% Similarity=0.079 Sum_probs=56.7
Q ss_pred CCCChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCC-CCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCCh
Q 014373 58 DQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTS-PSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGK 136 (426)
Q Consensus 58 ~~~~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~-~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~ 136 (426)
.|++.++-.+.|+.+++.|+|+.=- ...+-+.+... .-.|.++.++.|..+++.|++.||..+..|+-..
T Consensus 10 ~PWs~e~R~~l~~f~~~~kmN~YiY---APKdDpyhr~~Wre~Yp~~el~~l~~L~~~a~~~~V~Fv~aisPg~------ 80 (306)
T PF07555_consen 10 RPWSHEDRLDLIRFLGRYKMNTYIY---APKDDPYHRSKWREPYPEEELAELKELADAAKANGVDFVYAISPGL------ 80 (306)
T ss_dssp S---HHHHHHHHHHHHHTT--EEEE-----TT-TTTTTTTTS---HHHHHHHHHHHHHHHHTT-EEEEEEBGTT------
T ss_pred CCCCHHHHHHHHHHHHHcCCceEEE---CCCCChHHHhhhcccCCHHHHHHHHHHHHHHHHcCCEEEEEECccc------
Confidence 3677888999999999999996532 22111111111 1237788999999999999999999999996321
Q ss_pred hhHHHhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhc
Q 014373 137 AQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNR 176 (426)
Q Consensus 137 ~~y~~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r 176 (426)
...|++++..+..++-+++|.+-
T Consensus 81 -----------------~~~~s~~~d~~~L~~K~~ql~~l 103 (306)
T PF07555_consen 81 -----------------DICYSSEEDFEALKAKFDQLYDL 103 (306)
T ss_dssp -----------------T--TSHHHHHHHHHHHHHHHHCT
T ss_pred -----------------ccccCcHHHHHHHHHHHHHHHhc
Confidence 11155667777777777777664
No 109
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=85.19 E-value=12 Score=37.01 Aligned_cols=158 Identities=19% Similarity=0.166 Sum_probs=88.4
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHH--HHHHHHHHHcCCEEEEecCCCcCCC---CC
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKAL--DFVISEAKKYKIRLILSLTNNWDAY---GG 135 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~l--D~~l~~a~~~Gi~vil~l~~~w~~~---gg 135 (426)
+.+.+++.++.+++.|+.+==+|. |..|..- ...-.+|++.+-.. ..+++.+++.|++|++.++..-... ..
T Consensus 22 ~~~~v~~~~~~~r~~~iP~d~i~l--D~~~~~~-~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~ 98 (339)
T cd06602 22 NVDEVKEVVENMRAAGIPLDVQWN--DIDYMDR-RRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISANEPTGS 98 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEE--CcccccC-ccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccCcCCCC
Confidence 578899999999999998655543 2223110 01224566666666 8999999999999999875332110 11
Q ss_pred hhhHHHhhhh-------cCCCC--------CCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCC
Q 014373 136 KAQYVKWGKA-------AGLNL--------TSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEP 200 (426)
Q Consensus 136 ~~~y~~W~~~-------~g~~~--------~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp 200 (426)
.+.|..-... .|.+. ..-.+ |++|++++.+.+.++.++.. ++-+ .-|.=+|||
T Consensus 99 ~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~D-ftnp~a~~ww~~~~~~~~~~--------~Gvd---g~w~D~~Ep 166 (339)
T cd06602 99 YPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPD-FLNPNTQEWWTDEIKDFHDQ--------VPFD---GLWIDMNEP 166 (339)
T ss_pred CHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcC-CCCHHHHHHHHHHHHHHHhc--------CCCc---EEEecCCCC
Confidence 1222211110 01100 01123 78999999999999887765 3322 337779999
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHhcCCCCEEEe
Q 014373 201 RCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEI 233 (426)
Q Consensus 201 ~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~ 233 (426)
.........-...+.+.+...+++....+.++.
T Consensus 167 ~~~~~~hN~y~~~~~~~~~~~~~~~~~~r~~~~ 199 (339)
T cd06602 167 SNFYDVHNLYGLSEAIATYKALQSIPGKRPFVI 199 (339)
T ss_pred chHhhhcchhhHHHHHHHHHHHHhcCCCCCEEE
Confidence 643100000112244455666776633344444
No 110
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=84.02 E-value=3.1 Score=43.08 Aligned_cols=68 Identities=16% Similarity=0.131 Sum_probs=44.0
Q ss_pred CChHHHHHHHHHHHHCCCCEEEeccccCC--CcccccCC-CCCCC--hHHHHHHHHHHHHHHHcCCEEEEecC
Q 014373 60 STRGKVSELFHQASSAGLTVCRTWAFNDG--QWRALQTS-PSVYD--EEVFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 60 ~~~~~~~~dl~~~~~~G~N~vRi~~~~~~--~~~~~~~~-~g~~~--e~~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
++-.-+.+-|+.++++|+++|=+-.+... .+..+... .-.++ -..++.++.++++|+++||+||+++.
T Consensus 26 Gdl~Gi~~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~V 98 (505)
T COG0366 26 GDLKGITEKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDLV 98 (505)
T ss_pred ccHHhHHHhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 34566779999999999999977322111 11111000 00111 12377889999999999999999974
No 111
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=83.91 E-value=8.9 Score=38.30 Aligned_cols=90 Identities=14% Similarity=0.076 Sum_probs=63.0
Q ss_pred HHHHHHHHcCCEEEEecCCCcCCCCChhhHHHhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCC
Q 014373 110 FVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDP 189 (426)
Q Consensus 110 ~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p 189 (426)
.++..|+++|++|++.- +.+. ....+++.++.|.+-+..++++ |+=+.
T Consensus 68 ~~~~~A~~~~v~v~~~~--------~~~~----------------~~l~~~~~R~~fi~siv~~~~~--------~gfDG 115 (358)
T cd02875 68 ELLCYAHSKGVRLVLKG--------DVPL----------------EQISNPTYRTQWIQQKVELAKS--------QFMDG 115 (358)
T ss_pred HHHHHHHHcCCEEEEEC--------ccCH----------------HHcCCHHHHHHHHHHHHHHHHH--------hCCCe
Confidence 78889999999999752 1110 1246888999998888888888 65444
Q ss_pred cEEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCEEEec
Q 014373 190 TIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIG 234 (426)
Q Consensus 190 ~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~g 234 (426)
--+-||--+... ....+.+..+++++.+.+++..++-+|++.
T Consensus 116 IdIDwE~p~~~~---~~d~~~~t~llkelr~~l~~~~~~~~Lsva 157 (358)
T cd02875 116 INIDIEQPITKG---SPEYYALTELVKETTKAFKKENPGYQISFD 157 (358)
T ss_pred EEEcccCCCCCC---cchHHHHHHHHHHHHHHHhhcCCCcEEEEE
Confidence 445566433211 122467889999999999988777777764
No 112
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=83.60 E-value=4.9 Score=40.58 Aligned_cols=54 Identities=17% Similarity=0.057 Sum_probs=42.5
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
+.+++++||++++++|++..=+-+... ++-..+.|..++++|++.|.||++++.
T Consensus 15 t~~dw~~di~~A~~~GIDgFaLNig~~-------------d~~~~~~l~~a~~AA~~~gFKlf~SfD 68 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGIDGFALNIGSS-------------DSWQPDQLADAYQAAEAVGFKLFFSFD 68 (386)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccC-------------CcccHHHHHHHHHHHHhcCCEEEEEec
Confidence 568999999999999999877733211 122257888999999999999999983
No 113
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=82.24 E-value=3.1 Score=48.29 Aligned_cols=60 Identities=18% Similarity=0.237 Sum_probs=39.1
Q ss_pred HHHHHHHHCCCCEEEec-cccCCC--------------ccc---ccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014373 67 ELFHQASSAGLTVCRTW-AFNDGQ--------------WRA---LQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 67 ~dl~~~~~~G~N~vRi~-~~~~~~--------------~~~---~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
+.|+.++++|+|+|=+- ++.... |.. +.+.| .|.....+.|.++|++|+++||+||+++.
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp-~yg~~~~~efk~lV~~~H~~GI~VILDvV 268 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDP-RLAPGGEEEFAQAIKEAQSAGIAVILDVV 268 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcCh-hhccCcHHHHHHHHHHHHHCCCEEEEEEc
Confidence 56789999999999883 221100 110 01111 12112467899999999999999999974
No 114
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=82.09 E-value=4.2 Score=39.64 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
.+...+.|+.|.+.|+. ||+.. .+.+.+ -++..+..++.++..|.+.|++||+++.
T Consensus 15 ~~~~~~Yi~~~~~~Gf~--~IFts------l~~~~~--~~~~~~~~~~ell~~Anklg~~vivDvn 70 (360)
T COG3589 15 KEKDIAYIDRMHKYGFK--RIFTS------LLIPEE--DAELYFHRFKELLKEANKLGLRVIVDVN 70 (360)
T ss_pred chhHHHHHHHHHHcCcc--ceeee------cccCCc--hHHHHHHHHHHHHHHHHhcCcEEEEEcC
Confidence 46778899999999999 66431 112221 2356899999999999999999999973
No 115
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.98 E-value=5.4 Score=40.70 Aligned_cols=157 Identities=8% Similarity=0.083 Sum_probs=96.5
Q ss_pred CChHHHHHHHHHHHHCCCCEEEeccccCCC--------------------------ccccc---CCCCCCChH----HHH
Q 014373 60 STRGKVSELFHQASSAGLTVCRTWAFNDGQ--------------------------WRALQ---TSPSVYDEE----VFK 106 (426)
Q Consensus 60 ~~~~~~~~dl~~~~~~G~N~vRi~~~~~~~--------------------------~~~~~---~~~g~~~e~----~l~ 106 (426)
+..+++++.|+.|+=+|+|.+=.|.-.+.- |.++. .-.|-..++ .+-
T Consensus 75 W~w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~ 154 (666)
T KOG2233|consen 75 WGWEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLL 154 (666)
T ss_pred echHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHH
Confidence 357899999999999999988776311100 22111 011222221 122
Q ss_pred HHHHHHHHHHHcCCEEEEecCCCcCCCCChhhH-------------HHhhhhcCCCCCCCCCcC---CCHHHHHHHHHHH
Q 014373 107 ALDFVISEAKKYKIRLILSLTNNWDAYGGKAQY-------------VKWGKAAGLNLTSDDEFF---SHTTLKSYYKAHV 170 (426)
Q Consensus 107 ~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y-------------~~W~~~~g~~~~~~~~~~---~~~~~~~~~~~~~ 170 (426)
.=.++|+.+.+.||.+++.-+. |..|.. ..|.. .+....-.++ +||-.++.-..++
T Consensus 155 LqkrIidrm~~lGmTpvLPaFa-----G~VP~al~rlfPesnf~rl~rWn~---f~s~~~C~l~v~P~dplF~eIgs~Fl 226 (666)
T KOG2233|consen 155 LQKRIIDRMLELGMTPVLPAFA-----GHVPDALERLFPESNFTRLPRWNN---FTSRYSCMLLVSPFDPLFQEIGSTFL 226 (666)
T ss_pred HHHHHHHHHHHcCCCccchhhc-----cccHHHHHHhCchhceeeccccCC---CCcceeeeEEccCCcchHHHHHHHHH
Confidence 2348899999999999987432 222211 11210 0000000111 2455677777889
Q ss_pred HHHHhcccccccccccCCCcEEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCEEEe
Q 014373 171 KTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEI 233 (426)
Q Consensus 171 ~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~ 233 (426)
+++++. |+....|.+-+..||...... .++-+.+-...+...+|..|++..-..
T Consensus 227 r~~~ke--------fG~~tniy~~DpFNE~~Pp~s-epey~~staaAiyesm~kvdknaVWll 280 (666)
T KOG2233|consen 227 RHQIKE--------FGGVTNIYSADPFNEILPPES-EPEYVKSTAAAIYESMKKVDKNAVWLL 280 (666)
T ss_pred HHHHHH--------hCCcccccccCcccccCCCCC-ChHHHHHHHHHHHHHHhccCcceEEee
Confidence 999998 998888999999999987643 234455566677788899999986544
No 116
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=81.97 E-value=3.4 Score=39.28 Aligned_cols=61 Identities=18% Similarity=0.125 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014373 63 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 63 ~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
+.+++.++.++.+|+++|+++....+ + .......-+...+.|+.+.+.|+++||++.+..+
T Consensus 90 ~~~~~~i~~a~~lGa~~i~~~~~~~~-~---~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~ 150 (275)
T PRK09856 90 DMIKLAMDMAKEMNAGYTLISAAHAG-Y---LTPPNVIWGRLAENLSELCEYAENIGMDLILEPL 150 (275)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCC-C---CCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEecC
Confidence 56778899999999999999653221 1 1111111245677899999999999999988754
No 117
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=81.63 E-value=3.2 Score=41.44 Aligned_cols=57 Identities=14% Similarity=0.191 Sum_probs=39.3
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
+.+...+.|+.|+++|++ |||.. .+.++ .-.++.++.+..+++.|+++||+|++++.
T Consensus 12 ~~~~~~~yi~~a~~~Gf~--~iFTS------L~ipe--~~~~~~~~~~~~l~~~a~~~~~~v~~Dis 68 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFK--RIFTS------LHIPE--DDPEDYLERLKELLKLAKELGMEVIADIS 68 (357)
T ss_dssp -HHHHHHHHHHHHCTTEE--EEEEE------E-----------HHHHHHHHHHHHHHCT-EEEEEE-
T ss_pred CHHHHHHHHHHHHHCCCC--EEECC------CCcCC--CCHHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 367899999999999999 66431 01111 11356799999999999999999999984
No 118
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=81.60 E-value=41 Score=36.52 Aligned_cols=166 Identities=9% Similarity=0.142 Sum_probs=88.1
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCC----ccc-ccC---CCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCC-cCC
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQ----WRA-LQT---SPSVYDEEVFKALDFVISEAKKYKIRLILSLTNN-WDA 132 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~----~~~-~~~---~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~-w~~ 132 (426)
.+.+...|+.++++|+|+|=+=+|++.. ++. +.| -|++ ...|..+-..| +.++|++|.-=+.-. +..
T Consensus 333 ~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~~lp~r--~d~f~~~aw~l--~~r~~v~v~AWmp~~~~~~ 408 (671)
T PRK14582 333 DRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNRLLPMR--ADLFNRVAWQL--RTRAGVNVYAWMPVLSFDL 408 (671)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCccccccc--cCCcCHHHHHH--HHhhCCEEEEeccceeecc
Confidence 3677889999999999999886665421 211 111 2332 22233333333 889999984422110 100
Q ss_pred CCChhhHHHhhhhcCCCCCCCCCc-----CCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEE------------
Q 014373 133 YGGKAQYVKWGKAAGLNLTSDDEF-----FSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWE------------ 195 (426)
Q Consensus 133 ~gg~~~y~~W~~~~g~~~~~~~~~-----~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~we------------ 195 (426)
-...+.-..+. ..+.+...+.++ --+|++++..++..+.++.+ .++.|+.|-|+..+--+|
T Consensus 409 ~~~~~~~~~~~-~~~~~~~~~~~~~~rl~P~~pe~r~~i~~i~~dla~~-~~~dGilf~Dd~~l~d~ed~s~~a~~~~~~ 486 (671)
T PRK14582 409 DPTLPRVKRLD-TGEGKAQIHPEQYRRLSPFDDRVRAQVGMLYEDLAGH-AAFDGILFHDDAVLSDYEDASAPAITAYQQ 486 (671)
T ss_pred CCCcchhhhcc-ccCCccccCCCCCcCCCCCCHHHHHHHHHHHHHHHHh-CCCceEEecccccccccccCCHHHHHHHHH
Confidence 00011100110 011111111122 12689999999999999986 568899888876544333
Q ss_pred --eccCCCCCCCCChhHH-----------HHHHHHHHHHHHhcCCCCEEEec
Q 014373 196 --LMNEPRCTSDPSGDTL-----------QSWIQEMAVYVKSIDAKHLVEIG 234 (426)
Q Consensus 196 --L~NEp~~~~~~~~~~~-----------~~w~~~~~~~Ir~~dp~~lV~~g 234 (426)
|...+.... .+++.+ ..+..++++.+|...|..+.|..
T Consensus 487 ~g~~~~~~~~~-~~~~~~~~wt~~k~~~l~~f~~~l~~~v~~~~~~~~~tar 537 (671)
T PRK14582 487 AGFSGSLSEIR-QNPEQFKQWTRFKSRALTDFTLELSARVKAIRGPQVKTAR 537 (671)
T ss_pred cCCCcchhhhh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccceeec
Confidence 221111110 112333 34556788889998876666654
No 119
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=81.34 E-value=22 Score=31.62 Aligned_cols=130 Identities=14% Similarity=0.090 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHCCCCEEEeccccCCCcccc--cCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhHH
Q 014373 63 GKVSELFHQASSAGLTVCRTWAFNDGQWRAL--QTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYV 140 (426)
Q Consensus 63 ~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~--~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~ 140 (426)
...++..+.+++.|+..+-++.......... ....-. .+..++.+.+.++.|++.|++.++.....+....
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~------ 99 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGP------ 99 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEEECTTESSST------
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceeecCccccccc------
Confidence 4677888899999999777754322111000 001111 4667999999999999999999776422100000
Q ss_pred HhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCCCCCChhHHHHHHHHHHH
Q 014373 141 KWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAV 220 (426)
Q Consensus 141 ~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~ 220 (426)
-....+..+.+.+.++.+++. -+.+...++.| |.|...... ... +.++..
T Consensus 100 ---------------~~~~~~~~~~~~~~l~~l~~~--------a~~~gv~i~lE--~~~~~~~~~-~~~----~~~~~~ 149 (213)
T PF01261_consen 100 ---------------EDDTEENWERLAENLRELAEI--------AEEYGVRIALE--NHPGPFSET-PFS----VEEIYR 149 (213)
T ss_dssp ---------------TSSHHHHHHHHHHHHHHHHHH--------HHHHTSEEEEE---SSSSSSSE-ESS----HHHHHH
T ss_pred ---------------CCCHHHHHHHHHHHHHHHHhh--------hhhhcceEEEe--cccCccccc-hhh----HHHHHH
Confidence 012345666777777777776 44444555555 444443211 001 466777
Q ss_pred HHHhcCCCC
Q 014373 221 YVKSIDAKH 229 (426)
Q Consensus 221 ~Ir~~dp~~ 229 (426)
.++++++..
T Consensus 150 ~l~~~~~~~ 158 (213)
T PF01261_consen 150 LLEEVDSPN 158 (213)
T ss_dssp HHHHHTTTT
T ss_pred HHhhcCCCc
Confidence 888887554
No 120
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=80.00 E-value=5 Score=38.24 Aligned_cols=61 Identities=8% Similarity=0.218 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014373 63 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 63 ~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
+.+++.++.++.+|++.||++.+.. + ..+.+..--+...+.|+.+++.|+++||++.+..+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~--~--~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDV--Y--YEEKSEETRQRFIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCccc--c--cccccHHHHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 5578889999999999999854311 0 01111111245567899999999999999988754
No 121
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=79.99 E-value=4.2 Score=44.06 Aligned_cols=59 Identities=17% Similarity=0.280 Sum_probs=40.6
Q ss_pred HHHHHHCCCCEEEec-ccc--CC------------Cccc---ccCCCCCCC-----hHHHHHHHHHHHHHHHcCCEEEEe
Q 014373 69 FHQASSAGLTVCRTW-AFN--DG------------QWRA---LQTSPSVYD-----EEVFKALDFVISEAKKYKIRLILS 125 (426)
Q Consensus 69 l~~~~~~G~N~vRi~-~~~--~~------------~~~~---~~~~~g~~~-----e~~l~~lD~~l~~a~~~Gi~vil~ 125 (426)
|+.+|++|+++|.+. ++. +. +|.+ +-|+ |.|. ......|..+|.+++++||.||++
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~-~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPE-GRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCC-ccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 999999999999993 221 11 0111 1222 2221 235888999999999999999999
Q ss_pred cCC
Q 014373 126 LTN 128 (426)
Q Consensus 126 l~~ 128 (426)
+.-
T Consensus 285 VVf 287 (697)
T COG1523 285 VVF 287 (697)
T ss_pred Eec
Confidence 753
No 122
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=79.28 E-value=23 Score=33.88 Aligned_cols=77 Identities=14% Similarity=0.273 Sum_probs=54.1
Q ss_pred CCeEEEEEEeeccchhhhccCCCChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHH
Q 014373 38 NDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKK 117 (426)
Q Consensus 38 ~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~ 117 (426)
+|+.+.++|-+.- .+.+...+.-+.+|++|+.++|...+-. ..+|..|..-.-+.+..+-+.+++
T Consensus 25 ~~~~~~iaGPCsi---------e~~~~~~~~A~~lk~~g~~~~r~~~~kp------RTs~~s~~G~g~~gl~~l~~~~~~ 89 (266)
T PRK13398 25 GEEKIIIAGPCAV---------ESEEQMVKVAEKLKELGVHMLRGGAFKP------RTSPYSFQGLGEEGLKILKEVGDK 89 (266)
T ss_pred CCCEEEEEeCCcC---------CCHHHHHHHHHHHHHcCCCEEEEeeecC------CCCCCccCCcHHHHHHHHHHHHHH
Confidence 4566778888853 2467888899999999999999965521 112333332235556667777899
Q ss_pred cCCEEEEecCCC
Q 014373 118 YKIRLILSLTNN 129 (426)
Q Consensus 118 ~Gi~vil~l~~~ 129 (426)
.||.++-++++.
T Consensus 90 ~Gl~~~te~~d~ 101 (266)
T PRK13398 90 YNLPVVTEVMDT 101 (266)
T ss_pred cCCCEEEeeCCh
Confidence 999999998764
No 123
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=79.17 E-value=45 Score=32.66 Aligned_cols=159 Identities=13% Similarity=0.085 Sum_probs=88.6
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhHH
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYV 140 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~ 140 (426)
+.+.+++.++.+++.++.+==+|+ |..|.. ....-.+|++.+.....+++.+++.|+++++.++..-......+.|.
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~l--D~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~ 98 (317)
T cd06600 22 PQDKVVEVVDIMQKEGFPYDVVFL--DIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFL 98 (317)
T ss_pred CHHHHHHHHHHHHHcCCCcceEEE--ChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccCCCCChHHH
Confidence 578899999999999998766653 212311 01122467777778889999999999999988753321100111111
Q ss_pred Hhh------hh-cCCCC-----C--CCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCCCCC
Q 014373 141 KWG------KA-AGLNL-----T--SDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDP 206 (426)
Q Consensus 141 ~W~------~~-~g~~~-----~--~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~~ 206 (426)
.=. +. .|.+. . ..--=|++|++++.+.+.++.+... ++- -.-|.=+|||......
T Consensus 99 ~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~--------~gv---dg~w~D~~Ep~~~~~~ 167 (317)
T cd06600 99 SGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNS--------QGV---DGIWLDMNEPSDFEKV 167 (317)
T ss_pred HHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhc--------CCC---ceEEeeCCCCccHHHh
Confidence 100 00 01000 0 0111267899999999999887654 332 2236669999643110
Q ss_pred ChhHHHHHHHHHHHHHHhcCC-CCEEEe
Q 014373 207 SGDTLQSWIQEMAVYVKSIDA-KHLVEI 233 (426)
Q Consensus 207 ~~~~~~~w~~~~~~~Ir~~dp-~~lV~~ 233 (426)
..--...+.+.....+++..| .+++++
T Consensus 168 hn~y~~~~~~a~~~~~~~~~~~~r~~~~ 195 (317)
T cd06600 168 HNLYGLYEAMATAEGFRTSHPRNRIFIL 195 (317)
T ss_pred cchhhHHHHHHHHHHHHHhcCCCCceEE
Confidence 000012344555666776654 344444
No 124
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=79.10 E-value=6.2 Score=37.69 Aligned_cols=61 Identities=8% Similarity=0.116 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014373 63 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 63 ~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
+.+++.++.++.+|+++|+++... .. .....-..-+...+.|.++++.|+++||++.+..+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~---~~-~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~~ 154 (279)
T TIGR00542 94 EIMEKAIQLARDLGIRTIQLAGYD---VY-YEEHDEETRRRFREGLKEAVELAARAQVTLAVEIM 154 (279)
T ss_pred HHHHHHHHHHHHhCCCEEEecCcc---cc-cCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEeeC
Confidence 467889999999999999985321 00 01000011234677888999999999999999754
No 125
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=78.90 E-value=5.7 Score=37.30 Aligned_cols=63 Identities=14% Similarity=0.150 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCC
Q 014373 63 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNN 129 (426)
Q Consensus 63 ~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~ 129 (426)
+.+++.++.++.+|+..||++.... + -....-...+...+.|.++.+.|+++||++.+..++.
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~~---~-~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~ 146 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGKR---P-AGVSPEEARATLVENLRYAADALDRIGLTLLIEPINS 146 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCCC---C-CCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCc
Confidence 5667888999999999999854211 0 0000001123445678899999999999999987654
No 126
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=77.88 E-value=43 Score=31.42 Aligned_cols=100 Identities=16% Similarity=0.203 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhHHHhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccc
Q 014373 105 FKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLT 184 (426)
Q Consensus 105 l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~ 184 (426)
++.....+..+++.|+||++++.. |....+. ....+++.++.|.+.+..++++
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg-~~~~~~~------------------~~~~~~~~~~~fa~~l~~~v~~-------- 102 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILG-NHLGAGF------------------ANNLSDAAAKAYAKAIVDTVDK-------- 102 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECC-CCCCCCc------------------cccCCHHHHHHHHHHHHHHHHH--------
Confidence 456667888899999999999843 1110000 0124567778888888888877
Q ss_pred ccCCCcEEEEEeccCCCCCC-CCChhHHHHHHHHHHHHHHhcCC-CCEEEec
Q 014373 185 YKNDPTIFAWELMNEPRCTS-DPSGDTLQSWIQEMAVYVKSIDA-KHLVEIG 234 (426)
Q Consensus 185 y~~~p~I~~weL~NEp~~~~-~~~~~~~~~w~~~~~~~Ir~~dp-~~lV~~g 234 (426)
|+=|.--+-||-.+...... ....+.+..+++++.+.+ +| +.++++.
T Consensus 103 yglDGiDiD~E~~~~~~~~~~~~~~~~~~~lv~~Lr~~~---~~~~kllt~~ 151 (255)
T cd06542 103 YGLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIKELRKYM---GPTDKLLTID 151 (255)
T ss_pred hCCCceEEeeeecccCCCCCCcchHHHHHHHHHHHHHHh---CcCCcEEEEE
Confidence 76555556677655322110 112344555555555554 44 6677664
No 127
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=77.75 E-value=43 Score=32.51 Aligned_cols=158 Identities=14% Similarity=0.114 Sum_probs=86.9
Q ss_pred CChHHHHHHHHHHHHCCCCEEEeccccCCCcccccC-CCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhh
Q 014373 60 STRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQT-SPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQ 138 (426)
Q Consensus 60 ~~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~-~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~ 138 (426)
.+.+.+++.++.+++.|+.+==+++ |..|..-.. ..-.+|++.|-....+++.+++.|+++++-++..-.. ..+.
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~l--D~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~--~~~~ 96 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHL--DCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQ--KSPL 96 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEE--ecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCC--Cchh
Confidence 3578899999999999977644332 222421100 1234567777778899999999999999977532110 0112
Q ss_pred HHHhh------hh-cCCCC--------CCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCC
Q 014373 139 YVKWG------KA-AGLNL--------TSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCT 203 (426)
Q Consensus 139 y~~W~------~~-~g~~~--------~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~ 203 (426)
|..-. +. .|.+. ....+ |++|++++.+.+.++.+.+- |+. .-|.=+||+-..
T Consensus 97 ~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~D-ftnp~a~~w~~~~~~~~~~~-----Gid-------~~~~D~~e~~p~ 163 (308)
T cd06593 97 FKEAAEKGYLVKKPDGSVWQWDLWQPGMGIID-FTNPDACKWYKDKLKPLLDM-----GVD-------CFKTDFGERIPT 163 (308)
T ss_pred HHHHHHCCeEEECCCCCeeeecccCCCccccc-CCCHHHHHHHHHHHHHHHHh-----CCc-------EEecCCCCCCCc
Confidence 22100 00 01000 00112 67899999999988877652 111 113336776332
Q ss_pred CC--CC---hhH-----HHHHHHHHHHHHHhcCCCC-EEEec
Q 014373 204 SD--PS---GDT-----LQSWIQEMAVYVKSIDAKH-LVEIG 234 (426)
Q Consensus 204 ~~--~~---~~~-----~~~w~~~~~~~Ir~~dp~~-lV~~g 234 (426)
.. .. +.. ...+.+.+...+++..+++ ++++.
T Consensus 164 ~~~~~~g~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~~ 205 (308)
T cd06593 164 DVVYYDGSDGEKMHNYYALLYNKAVYEATKEVKGEGEAVVWA 205 (308)
T ss_pred cccccCCCCcceeeeHHHHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 11 01 111 2345566777788877763 55443
No 128
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=77.19 E-value=23 Score=37.08 Aligned_cols=83 Identities=20% Similarity=0.264 Sum_probs=56.0
Q ss_pred ECCeEEEEEEeeccchhhhccCCCChHHHHHHHHHHHHCCCCEEEeccccCCCcc--cccCCCCCCChHHHHHHHHHHHH
Q 014373 37 VNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWR--ALQTSPSVYDEEVFKALDFVISE 114 (426)
Q Consensus 37 ~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~--~~~~~~g~~~e~~l~~lD~~l~~ 114 (426)
.+|+.-|+-||--. + -.+|+..++-..-|+.++++|+++.=- +--| +|. .+- .--|+-+-.++|..+|++
T Consensus 11 A~g~r~fiCGVvEG---F-YGRPWt~EQRK~LFrrl~~~gl~tYlY-APKD-DyKHR~~W--RElY~vEEa~~L~~Li~a 82 (891)
T KOG3698|consen 11 AVGNRKFICGVVEG---F-YGRPWTPEQRKHLFRRLNQLGLTTYLY-APKD-DYKHRSLW--RELYNVEEATYLRNLIEA 82 (891)
T ss_pred ccccceeEEEeecc---c-cCCCCCHHHHHHHHHHHHhcccceeee-cccc-hhHHHHHH--HHHhhhHHHHHHHHHHHH
Confidence 45677788888631 1 135778899999999999999995432 1101 110 000 012566678899999999
Q ss_pred HHHcCCEEEEecC
Q 014373 115 AKKYKIRLILSLT 127 (426)
Q Consensus 115 a~~~Gi~vil~l~ 127 (426)
|+++||..+-.+.
T Consensus 83 Ake~~i~F~YAiS 95 (891)
T KOG3698|consen 83 AKENNINFVYAIS 95 (891)
T ss_pred HHhcCceEEEEcC
Confidence 9999999888764
No 129
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=76.91 E-value=6.5 Score=37.54 Aligned_cols=61 Identities=10% Similarity=0.184 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014373 63 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 63 ~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
+.+++.++.++.+|+.+|++..... + ........-+...+.|+.+++.|+++||++.+..+
T Consensus 99 ~~~~~~i~~a~~lG~~~i~~~~~~~--~--~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~ 159 (283)
T PRK13209 99 EIMRKAIQLAQDLGIRVIQLAGYDV--Y--YEQANNETRRRFIDGLKESVELASRASVTLAFEIM 159 (283)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccc--c--ccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeec
Confidence 4578889999999999999853210 0 01100001123467889999999999998888764
No 130
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=76.87 E-value=22 Score=35.20 Aligned_cols=128 Identities=13% Similarity=0.200 Sum_probs=77.3
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhHH
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYV 140 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~ 140 (426)
+.+.+.+.++.+++.|+.+==+|+ |..|.. ....-.+|++.+-....+++..++.|++|++.++..-..-.+.+.|.
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~l--D~~~~~-~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~ 98 (339)
T cd06603 22 DQEDVKEVDAGFDEHDIPYDVIWL--DIEHTD-GKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRDDGYYVYK 98 (339)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEE--ChHHhC-CCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecCCCCHHHH
Confidence 578899999999999998666643 111210 01112456777777889999999999999998753321111122333
Q ss_pred HhhhhcCC--------CC--------CCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCC
Q 014373 141 KWGKAAGL--------NL--------TSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRC 202 (426)
Q Consensus 141 ~W~~~~g~--------~~--------~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~ 202 (426)
.-. ..|. +. ....+ |++|++++.+.+.++.+... . +.+....|.=+|||..
T Consensus 99 e~~-~~g~~vk~~~g~~~~~~~w~g~~~~~D-ftnp~a~~ww~~~~~~~~~~--------~-~~g~~g~w~D~~Ep~~ 165 (339)
T cd06603 99 EAK-DKGYLVKNSDGGDFEGWCWPGSSSWPD-FLNPEVRDWWASLFSYDKYK--------G-STENLYIWNDMNEPSV 165 (339)
T ss_pred HHH-HCCeEEECCCCCEEEEEECCCCcCCcc-CCChhHHHHHHHHHHHHhhc--------c-cCCCceEEeccCCccc
Confidence 211 1110 00 01123 67899999999998887543 1 2233445777999864
No 131
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=76.77 E-value=20 Score=35.52 Aligned_cols=77 Identities=16% Similarity=0.276 Sum_probs=53.3
Q ss_pred CCeEEEEEEeeccchhhhccCCCChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHH
Q 014373 38 NDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKK 117 (426)
Q Consensus 38 ~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~ 117 (426)
+++.+++.|-+.- .+++.+.+.-+.+|+.|.+++|...|- | ..+|..|..-..+.|..+.+.+++
T Consensus 91 ~~~~~~IAGPCsi---------Es~e~~~~~A~~lk~~ga~~~r~~~fK----p--RTsp~sf~G~g~~gL~~L~~~~~~ 155 (335)
T PRK08673 91 GGKPVVIAGPCSV---------ESEEQILEIARAVKEAGAQILRGGAFK----P--RTSPYSFQGLGEEGLKLLAEAREE 155 (335)
T ss_pred CCceEEEEecCcc---------CCHHHHHHHHHHHHHhchhhccCcEec----C--CCCCcccccccHHHHHHHHHHHHH
Confidence 5666777775532 346788888889999999999987662 1 122333333235556677778999
Q ss_pred cCCEEEEecCCC
Q 014373 118 YKIRLILSLTNN 129 (426)
Q Consensus 118 ~Gi~vil~l~~~ 129 (426)
.||.++-++++.
T Consensus 156 ~Gl~v~tev~d~ 167 (335)
T PRK08673 156 TGLPIVTEVMDP 167 (335)
T ss_pred cCCcEEEeeCCH
Confidence 999999998763
No 132
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=75.89 E-value=20 Score=34.65 Aligned_cols=130 Identities=13% Similarity=0.192 Sum_probs=76.1
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCCccccc--------CCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCC
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQ--------TSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDA 132 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~--------~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~ 132 (426)
+.+.+++.++.+++.|+.+==||. |..|..-. -..-.+|++.+.....+++..++.|+++++.++-.-..
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~l--D~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~~~ 100 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVI--DMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPADGI 100 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEE--ecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCccc
Confidence 578899999999999998655543 21232110 01224677778888999999999999999987543111
Q ss_pred CCChhhHHHhhhhcCCCCCCCC---CcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCC
Q 014373 133 YGGKAQYVKWGKAAGLNLTSDD---EFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCT 203 (426)
Q Consensus 133 ~gg~~~y~~W~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~ 203 (426)
-...+.|....+..+....... --+++|++++.+.+.+...+.. ++ .-.-|.=+|||...
T Consensus 101 ~~~~~~y~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~--------~G---idg~W~D~~E~~~~ 163 (292)
T cd06595 101 RAHEDQYPEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEK--------QG---VDFWWLDWQQGNRT 163 (292)
T ss_pred CCCcHHHHHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHh--------cC---CcEEEecCCCCccc
Confidence 1122345544333333211111 1257898887665554443333 22 22336678998653
No 133
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=75.71 E-value=21 Score=35.73 Aligned_cols=78 Identities=19% Similarity=0.270 Sum_probs=55.5
Q ss_pred ECCeEEEEEEeeccchhhhccCCCChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHH
Q 014373 37 VNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAK 116 (426)
Q Consensus 37 ~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~ 116 (426)
-+|++.++.|-+.- .+.+.+.+.-..+++.|++.+|--.|. + ..+|..|..-.++.+..+-+.|+
T Consensus 115 g~~~~~~iaGpc~i---------E~~~~~~~~A~~lk~~g~~~~r~~~~k----p--Rtsp~~f~g~~~e~l~~L~~~~~ 179 (360)
T PRK12595 115 GDGNQSFIFGPCSV---------ESYEQVEAVAKALKAKGLKLLRGGAFK----P--RTSPYDFQGLGVEGLKILKQVAD 179 (360)
T ss_pred cCCCeeeEEecccc---------cCHHHHHHHHHHHHHcCCcEEEccccC----C--CCCCccccCCCHHHHHHHHHHHH
Confidence 35777777777532 245778888888999999999974432 1 23344444444677778888899
Q ss_pred HcCCEEEEecCCC
Q 014373 117 KYKIRLILSLTNN 129 (426)
Q Consensus 117 ~~Gi~vil~l~~~ 129 (426)
+.||.++.++++.
T Consensus 180 ~~Gl~~~t~v~d~ 192 (360)
T PRK12595 180 EYGLAVISEIVNP 192 (360)
T ss_pred HcCCCEEEeeCCH
Confidence 9999999998764
No 134
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=75.06 E-value=73 Score=29.77 Aligned_cols=71 Identities=17% Similarity=0.237 Sum_probs=46.6
Q ss_pred ChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhHHHhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccc
Q 014373 101 DEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTF 180 (426)
Q Consensus 101 ~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~ 180 (426)
-+.+++-+.+.+..|++.||++|=- .|.+.|-. =.|++.++.|.+-++..+.-
T Consensus 91 r~~aleiM~KaI~LA~dLGIRtIQL--------AGYDVYYE---------------~~d~eT~~rFi~g~~~a~~l---- 143 (287)
T COG3623 91 RQQALEIMEKAIQLAQDLGIRTIQL--------AGYDVYYE---------------EADEETRQRFIEGLKWAVEL---- 143 (287)
T ss_pred HHHHHHHHHHHHHHHHHhCceeEee--------ccceeeec---------------cCCHHHHHHHHHHHHHHHHH----
Confidence 3567889999999999999998642 23343321 13678888888766665542
Q ss_pred ccccccCCCcEEEEEeccCCCC
Q 014373 181 TNLTYKNDPTIFAWELMNEPRC 202 (426)
Q Consensus 181 tg~~y~~~p~I~~weL~NEp~~ 202 (426)
=....-.++.|++--|-.
T Consensus 144 ----A~~aqV~lAvEiMDtpfm 161 (287)
T COG3623 144 ----AARAQVMLAVEIMDTPFM 161 (287)
T ss_pred ----HHhhccEEEeeecccHHH
Confidence 111235678898887754
No 135
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=74.87 E-value=12 Score=35.24 Aligned_cols=76 Identities=9% Similarity=0.190 Sum_probs=55.2
Q ss_pred CeEEEEEEeeccchhhhccCCCChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHc
Q 014373 39 DQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKY 118 (426)
Q Consensus 39 G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~ 118 (426)
|.+..+.|-+.- .+++.+.+.-+.++++|++.+|=-.|.. ..+|..|..-.++.|..+.+.+++.
T Consensus 14 ~~~~~iaGPC~v---------Es~e~~~~~a~~~~~~g~~~~r~g~~kp------Rts~~sf~G~G~~gl~~L~~~~~~~ 78 (250)
T PRK13397 14 SKNNFIVGPCSI---------ESYDHIRLAASSAKKLGYNYFRGGAYKP------RTSAASFQGLGLQGIRYLHEVCQEF 78 (250)
T ss_pred CCCcEEeccCcc---------CCHHHHHHHHHHHHHcCCCEEEecccCC------CCCCcccCCCCHHHHHHHHHHHHHc
Confidence 334555566642 3567787888889999999999865531 2345556555567888899999999
Q ss_pred CCEEEEecCCC
Q 014373 119 KIRLILSLTNN 129 (426)
Q Consensus 119 Gi~vil~l~~~ 129 (426)
||.++-++++.
T Consensus 79 Gl~~~Tev~d~ 89 (250)
T PRK13397 79 GLLSVSEIMSE 89 (250)
T ss_pred CCCEEEeeCCH
Confidence 99999998764
No 136
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=74.04 E-value=6.3 Score=35.23 Aligned_cols=65 Identities=12% Similarity=0.019 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN 128 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~ 128 (426)
.+.+++.++.++.+|+..++++........ +.....--+...+.|+++++.|+++|+++.+..+.
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~--~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~ 134 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGP--EDDTEENWERLAENLRELAEIAEEYGVRIALENHP 134 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSST--TSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SS
T ss_pred HHHHHHHHHHHHHhCCCceeecCccccccc--CCCHHHHHHHHHHHHHHHHhhhhhhcceEEEeccc
Confidence 467889999999999999999743100000 00000112456778999999999999999888654
No 137
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=73.81 E-value=88 Score=30.15 Aligned_cols=238 Identities=10% Similarity=0.113 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHCCCCEEEeccccCCCcccccC---CCCCCChHHHHHHHHHH-HHHHHcCCEEEEecCC-CcCCCCChh
Q 014373 63 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQT---SPSVYDEEVFKALDFVI-SEAKKYKIRLILSLTN-NWDAYGGKA 137 (426)
Q Consensus 63 ~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~---~~g~~~e~~l~~lD~~l-~~a~~~Gi~vil~l~~-~w~~~gg~~ 137 (426)
..+..-|+.++++|+|+|=+=+|.+..-..... =|...-+---+.|.++. .+..+.|++|.-=+.- .| +.++.+
T Consensus 17 ~nl~~l~~ri~~~~~~tV~Lqaf~d~~gdg~~~~~YFpnr~lpvraDlf~rvawql~tr~~v~VyAWMPvlaf-~lp~~~ 95 (294)
T PF14883_consen 17 RNLDKLIQRIKDMGINTVYLQAFADPDGDGNADAVYFPNRHLPVRADLFNRVAWQLRTRAGVKVYAWMPVLAF-DLPKVK 95 (294)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeCCCCCCceeeEEcCCCCCchHHHHHHHHHHHHhhhhCCEEEEeeehhhc-cCCCcc
Confidence 467788999999999999886665431000000 01111111223444555 5556899998443211 12 122222
Q ss_pred hHHHhhhhcCCCCC-CCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEe---ccCCCCCCCCChhHHHH
Q 014373 138 QYVKWGKAAGLNLT-SDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWEL---MNEPRCTSDPSGDTLQS 213 (426)
Q Consensus 138 ~y~~W~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL---~NEp~~~~~~~~~~~~~ 213 (426)
.+..+......+.. ..-..| +|++++..++.-+.++.. +.|.|+.|.|+..+--+|+ -++|.. ....+.+..
T Consensus 96 ~~~~~~~~~~~~~~y~RLSPf-~p~~r~~I~~IYeDLA~y-~~fdGILFhDDa~L~D~E~~~~~~~~~~--~~Kt~~Li~ 171 (294)
T PF14883_consen 96 RADEVRTDRPDPDGYRRLSPF-DPEARQIIKEIYEDLARY-SKFDGILFHDDAVLSDFEIAAIRQNPAD--RQKTRALID 171 (294)
T ss_pred hhhhccccCCCCCCceecCCC-CHHHHHHHHHHHHHHHhh-CCCCeEEEcCCccccchhhhhhccChhh--HHHHHHHHH
Confidence 11111110000000 111222 688988888888888775 7889999988865554551 111111 011256788
Q ss_pred HHHHHHHHHHhcCCCCEEEeccccccCCCCCCCccCCCC--cccccccchhhhhcCCCCcceEEEeccCCCccCCCChhH
Q 014373 214 WIQEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPN--SYATQVGTDFIRNHQTLGVDFASVHIYADSWISQTISDA 291 (426)
Q Consensus 214 w~~~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~np~--~y~~~~g~d~~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~ 291 (426)
+..++.+.+|...|.....- ..|... ..+|. .|- .+++... ...-|++.+=..|-. ...
T Consensus 172 ft~eL~~~v~~~rp~lkTAR---Niya~p-----vl~P~se~Wf---AQnl~~f--l~~YD~taimAMPym--E~~---- 232 (294)
T PF14883_consen 172 FTMELAAAVRRYRPDLKTAR---NIYAEP-----VLNPESEAWF---AQNLDDF--LKAYDYTAIMAMPYM--EQA---- 232 (294)
T ss_pred HHHHHHHHHHHhCccchhhh---cccccc-----cCCcchhhHH---HHhHHHH--HHhCCeeheeccchh--ccc----
Confidence 89999999999987644321 122221 12332 121 1111111 224567666544421 111
Q ss_pred HHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCCC
Q 014373 292 HLQFTKSWMEAHIEDAEKYLR-MPVLFTEFGVSAKD 326 (426)
Q Consensus 292 ~~~~~~~~l~~~~~~a~~~~~-kPv~v~EfG~~~~~ 326 (426)
+.-.+|+.+.++..++..+ +-=+|-|.-+....
T Consensus 233 --~~~~~WL~~Lv~~v~~~p~~l~KtvFELQa~dwr 266 (294)
T PF14883_consen 233 --EDPEQWLAQLVDAVAARPGGLDKTVFELQAVDWR 266 (294)
T ss_pred --cCHHHHHHHHHHHHHhcCCcccceEEEEeccCCc
Confidence 1235677776666555322 33467777666554
No 138
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=73.60 E-value=25 Score=34.19 Aligned_cols=126 Identities=12% Similarity=0.164 Sum_probs=74.8
Q ss_pred CChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhH
Q 014373 60 STRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQY 139 (426)
Q Consensus 60 ~~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y 139 (426)
.+.+.+.+.++.+++.|+.+=-|++ |..|..-. ..-.+|++.|..+..+++..++.|+++++-+...-.. ..+.|
T Consensus 27 ~s~~~v~~~~~~~~~~~iP~d~i~i--D~~w~~~~-g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~--~s~~~ 101 (303)
T cd06592 27 INQETVLNYAQEIIDNGFPNGQIEI--DDNWETCY-GDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINT--DSENF 101 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCCCeEEe--CCCccccC-CccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCC--CCHHH
Confidence 3678999999999999986544332 22242110 1224677777788999999999999999987432111 01122
Q ss_pred HH------hhhh-cC-CCCC-----CCCC--cCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCC
Q 014373 140 VK------WGKA-AG-LNLT-----SDDE--FFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPR 201 (426)
Q Consensus 140 ~~------W~~~-~g-~~~~-----~~~~--~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~ 201 (426)
.. |.+. .| .+.. .... =+++|++++.+.+.++.++.. ++=+ . -|.=+|||.
T Consensus 102 ~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~--------~Gvd-g--~w~D~~E~~ 167 (303)
T cd06592 102 REAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEK--------YGID-S--FKFDAGEAS 167 (303)
T ss_pred HhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHH--------hCCc-E--EEeCCCCcc
Confidence 21 1111 01 1100 0011 167899999999999998865 3321 1 245589985
No 139
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=73.44 E-value=10 Score=35.70 Aligned_cols=63 Identities=16% Similarity=0.095 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCC
Q 014373 63 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNN 129 (426)
Q Consensus 63 ~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~ 129 (426)
+.+++-++.++++|+..|++.... .+. ...+...-+...+.|.++.+.|+++||++.+..+++
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~---~~~-~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~ 147 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGK---TPA-GFSSEQIHATLVENLRYAANMLMKEDILLLIEPINH 147 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCC---CCC-CCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCC
Confidence 457888999999999999984311 000 000111123445677888999999999999986554
No 140
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=73.05 E-value=14 Score=38.18 Aligned_cols=63 Identities=21% Similarity=0.288 Sum_probs=45.9
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCCcc-------ccc----------------------------CCCCCCChHHH
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQWR-------ALQ----------------------------TSPSVYDEEVF 105 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~-------~~~----------------------------~~~g~~~e~~l 105 (426)
+.+.+.+.|+.|+..++|++-+++-.+..|+ .+. ...|.|. -
T Consensus 20 ~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~~~~~~~~~~~~g~YT---~ 96 (445)
T cd06569 20 SKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQLGSGPDTNNSGSGYYS---R 96 (445)
T ss_pred CHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccccccccccCcccCcccCCccC---H
Confidence 4689999999999999999998764433342 110 0013355 4
Q ss_pred HHHHHHHHHHHHcCCEEEEec
Q 014373 106 KALDFVISEAKKYKIRLILSL 126 (426)
Q Consensus 106 ~~lD~~l~~a~~~Gi~vil~l 126 (426)
+.+..+++.|+++||.||..+
T Consensus 97 ~di~eiv~yA~~rgI~VIPEI 117 (445)
T cd06569 97 ADYIEILKYAKARHIEVIPEI 117 (445)
T ss_pred HHHHHHHHHHHHcCCEEEEcc
Confidence 566789999999999999987
No 141
>PLN03244 alpha-amylase; Provisional
Probab=71.78 E-value=50 Score=36.45 Aligned_cols=127 Identities=8% Similarity=0.091 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEecC-CCcCC--------CCChh-hHHHhhhhcCCC--CCCCCCcCCCHHHHHHHHHHHHH
Q 014373 105 FKALDFVISEAKKYKIRLILSLT-NNWDA--------YGGKA-QYVKWGKAAGLN--LTSDDEFFSHTTLKSYYKAHVKT 172 (426)
Q Consensus 105 l~~lD~~l~~a~~~Gi~vil~l~-~~w~~--------~gg~~-~y~~W~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~ 172 (426)
.+.|.++|++|.++||.||+++. ++... ++|.+ .|-... ..|.. ......-+..+++++.+..-++.
T Consensus 440 PeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~-~~g~~~~WGs~~fnyg~~EVr~FLLsna~y 518 (872)
T PLN03244 440 PDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTG-KRGHHKHWGTRMFKYGDLDVLHFLISNLNW 518 (872)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCccCCCccccchhhcCCCccceeccC-CCCccCCCCCceecCCCHHHHHHHHHHHHH
Confidence 45688999999999999999974 32211 11111 111100 00000 00111235578999999999999
Q ss_pred HHhcccccccccccCCCcEEEEEeccCCC-----CCC-CCChhHHHHHHHHHHHHHHhcCCCCEEEec
Q 014373 173 VLNRVNTFTNLTYKNDPTIFAWELMNEPR-----CTS-DPSGDTLQSWIQEMAVYVKSIDAKHLVEIG 234 (426)
Q Consensus 173 iv~r~n~~tg~~y~~~p~I~~weL~NEp~-----~~~-~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~g 234 (426)
.++..+ +-|.++-.-.+++-..-+.++. ... .........++..+...|++..|+.+ +++
T Consensus 519 WleEyh-IDGFRfDaVtSMLY~d~G~~~f~g~~~~y~n~~~d~dAv~fL~laN~~ih~~~P~~i-tIA 584 (872)
T PLN03244 519 WITEYQ-IDGFQFHSLASMIYTHNGFASFNGDLDDYCNQYVDKDALMYLILANEILHALHPKII-TIA 584 (872)
T ss_pred HHHHhC-cCcceeecchhheeeccccccccCCccccccccCCchHHHHHHHHHHHHHHhCCCeE-EEE
Confidence 887622 1222232222333222111110 000 00123467788999999999999854 443
No 142
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=71.14 E-value=1.1e+02 Score=34.82 Aligned_cols=126 Identities=18% Similarity=0.257 Sum_probs=71.7
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhHH
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYV 140 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~ 140 (426)
+.+.+++.++.+++.|+.+==+|. |..|-. .-..-.+|++.|-....+++..++.|+++++.++-.-..-.+...|.
T Consensus 199 sq~eV~eva~~fre~~IP~DvIwl--DidYm~-g~~~FTwD~~rFPdP~~mv~~Lh~~G~kvv~iidPgI~~d~gY~~y~ 275 (978)
T PLN02763 199 SAKRVAEIARTFREKKIPCDVVWM--DIDYMD-GFRCFTFDKERFPDPKGLADDLHSIGFKAIWMLDPGIKAEEGYFVYD 275 (978)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEE--ehhhhc-CCCceeECcccCCCHHHHHHHHHHCCCEEEEEEcCCCccCCCCHHHH
Confidence 467899999999999998666654 111210 00122456666777789999999999999776532211101112221
Q ss_pred H------hhhh-cCCCC--------CCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCC
Q 014373 141 K------WGKA-AGLNL--------TSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRC 202 (426)
Q Consensus 141 ~------W~~~-~g~~~--------~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~ 202 (426)
. |.+. .|.+. ..-.+ |++|++++.+.+.++.+++. += =.-|.=+|||..
T Consensus 276 eg~~~~~fvk~~~G~~y~G~vWpG~~~fpD-FTnP~ar~WW~~~~k~l~d~---------GV---DG~W~DmnEPa~ 339 (978)
T PLN02763 276 SGCENDVWIQTADGKPFVGEVWPGPCVFPD-FTNKKTRSWWANLVKDFVSN---------GV---DGIWNDMNEPAV 339 (978)
T ss_pred hHhhcCeeEECCCCCeeEeeecCCCccccC-CCCHHHHHHHHHHHHHHhcC---------CC---cEEEccCCCCcc
Confidence 1 1000 11100 00113 67899999888887776542 11 123666899864
No 143
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=69.16 E-value=24 Score=29.82 Aligned_cols=55 Identities=18% Similarity=0.378 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhHHHhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhc
Q 014373 103 EVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNR 176 (426)
Q Consensus 103 ~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r 176 (426)
.-++.|.-+|+.|++.|+.|++.+. |....|....|. +.+.++.+-+.++.++++
T Consensus 33 pEy~Dl~l~L~~~k~~g~~~lfVi~---------PvNg~wydytG~----------~~~~r~~~y~kI~~~~~~ 87 (130)
T PF04914_consen 33 PEYDDLQLLLDVCKELGIDVLFVIQ---------PVNGKWYDYTGL----------SKEMRQEYYKKIKYQLKS 87 (130)
T ss_dssp THHHHHHHHHHHHHHTT-EEEEEE-------------HHHHHHTT------------HHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHcCCceEEEec---------CCcHHHHHHhCC----------CHHHHHHHHHHHHHHHHH
Confidence 3477889999999999999988763 233457654442 578899999999999998
No 144
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=68.95 E-value=34 Score=36.61 Aligned_cols=64 Identities=17% Similarity=0.172 Sum_probs=44.7
Q ss_pred EEEEEeeccchhhhccCCCChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCE
Q 014373 42 FYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIR 121 (426)
Q Consensus 42 ~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~ 121 (426)
..++|.|.. +......+.++..++.+++.|+.++|++-..+ -++.+...++++++.|+.
T Consensus 80 mL~Rg~N~v-----Gy~~~~d~vv~~~v~~a~~~Gidv~Rifd~ln----------------d~~n~~~~i~~~k~~G~~ 138 (596)
T PRK14042 80 MLLRGQNLL-----GYRNYADDVVRAFVKLAVNNGVDVFRVFDALN----------------DARNLKVAIDAIKSHKKH 138 (596)
T ss_pred EEecccccc-----ccccCChHHHHHHHHHHHHcCCCEEEEcccCc----------------chHHHHHHHHHHHHcCCE
Confidence 346677753 11112356888999999999999999964321 155667788888999988
Q ss_pred EEEec
Q 014373 122 LILSL 126 (426)
Q Consensus 122 vil~l 126 (426)
+..++
T Consensus 139 ~~~~i 143 (596)
T PRK14042 139 AQGAI 143 (596)
T ss_pred EEEEE
Confidence 87764
No 145
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=67.91 E-value=11 Score=35.96 Aligned_cols=61 Identities=13% Similarity=0.084 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
.+.+++-++.++++|++.|+++..... . ......-+...+.|.++++.|+++||++.+.-+
T Consensus 84 ~~~~~~~i~~A~~lG~~~v~~~~g~~~---~--~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~ 144 (279)
T cd00019 84 IERLKDEIERCEELGIRLLVFHPGSYL---G--QSKEEGLKRVIEALNELIDKAETKGVVIALETM 144 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCC---C--CCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCC
Confidence 356788999999999999998643211 0 000011145578899999999999999888754
No 146
>PRK14565 triosephosphate isomerase; Provisional
Probab=67.49 E-value=30 Score=32.47 Aligned_cols=119 Identities=16% Similarity=0.140 Sum_probs=63.5
Q ss_pred HHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhHHHhhhhcCC
Q 014373 69 FHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGL 148 (426)
Q Consensus 69 l~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~g~ 148 (426)
...++++|++.+=+- +++. +-.|+|. =+.+.+=+..|.++||.+|+|+-..- .. ...|
T Consensus 78 ~~mLkd~G~~~viiG-HSER--------R~~f~Et-d~~V~~Kv~~al~~gl~pIvCiGE~~------e~-----r~~~- 135 (237)
T PRK14565 78 AKMLKECGCSYVILG-HSER--------RSTFHET-DSDIRLKAESAIESGLIPIICVGETL------ED-----RENG- 135 (237)
T ss_pred HHHHHHcCCCEEEEC-cccc--------cCcCCcC-HHHHHHHHHHHHHCCCEEEEEcCCCH------HH-----HHcc-
Confidence 356889999988873 3321 1123322 11233344889999999999983320 00 0011
Q ss_pred CCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 014373 149 NLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAK 228 (426)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~ 228 (426)
...+...+.++..+.- . .+.|++| ||-+..-.....-.+-++++.+.||+..++
T Consensus 136 ------------~~~~~~~~Ql~~~l~~--------~--~~ivIAY----EPvWAIGtG~~a~~e~i~~~~~~Ir~~~~~ 189 (237)
T PRK14565 136 ------------MTKDVLLEQCSNCLPK--------H--GEFIIAY----EPVWAIGGSTIPSNDAIAEAFEIIRSYDSK 189 (237)
T ss_pred ------------ChHHHHHHHHHHHhcC--------C--CCEEEEE----CCHHHhCCCCCCCHHHHHHHHHHHHHhCCC
Confidence 1223333344444332 2 2456665 565432111111234578888999998777
Q ss_pred CEEEecc
Q 014373 229 HLVEIGL 235 (426)
Q Consensus 229 ~lV~~g~ 235 (426)
..|..|.
T Consensus 190 ~~IlYGG 196 (237)
T PRK14565 190 SHIIYGG 196 (237)
T ss_pred ceEEEcC
Confidence 7787763
No 147
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=67.26 E-value=52 Score=31.95 Aligned_cols=95 Identities=13% Similarity=0.216 Sum_probs=61.6
Q ss_pred HHHHHHHHHcCCEEEEecCCCcCCCCChhhHHHhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCC
Q 014373 109 DFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKND 188 (426)
Q Consensus 109 D~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~ 188 (426)
.+++..|+++|+++++.+.+ |.. ++.+. . .-..+..+++.++.|.+-+..++++ |+=+
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~-~~~-~~~~~--~----------~~~~~l~~~~~r~~fi~~iv~~l~~--------~~~D 105 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITN-LTN-GNFDS--E----------LAHAVLSNPEARQRLINNILALAKK--------YGYD 105 (313)
T ss_pred HHHHHHHHHCCCeEEEEEec-CCC-CCCCH--H----------HHHHHhcCHHHHHHHHHHHHHHHHH--------hCCC
Confidence 36889999999999999854 321 11110 0 0013466888999999888888888 6655
Q ss_pred CcEEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCEEEe
Q 014373 189 PTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEI 233 (426)
Q Consensus 189 p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~ 233 (426)
.-.+-||-. .. .+.+.+..+++++...+++. +.++++
T Consensus 106 GidiDwE~~---~~---~d~~~~~~fl~~lr~~l~~~--~~~lsv 142 (313)
T cd02874 106 GVNIDFENV---PP---EDREAYTQFLRELSDRLHPA--GYTLST 142 (313)
T ss_pred cEEEecccC---CH---HHHHHHHHHHHHHHHHhhhc--CcEEEE
Confidence 555556532 11 12466888899998888754 335544
No 148
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=67.10 E-value=34 Score=33.81 Aligned_cols=126 Identities=14% Similarity=0.185 Sum_probs=71.6
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhHH
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYV 140 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~ 140 (426)
+.+.+.+.++.+++.|+.+==+|+ |..|..- -..-.+|++.+-....+++..+++|+++++-++.+-....+.+.|.
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~l--D~~~~~~-~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~ 98 (339)
T cd06604 22 PEEEVREIADEFRERDIPCDAIYL--DIDYMDG-YRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKVDPGYDVYE 98 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEE--CchhhCC-CCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeCCCCChHHH
Confidence 567899999999999998655543 2122110 0112356666666788999999999999876543211101112222
Q ss_pred Hhhh-------hcCCCC--------CCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCC
Q 014373 141 KWGK-------AAGLNL--------TSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRC 202 (426)
Q Consensus 141 ~W~~-------~~g~~~--------~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~ 202 (426)
.=.. ..|.+. ..-.+ |++|++++.+.+.++.+++- + --.-|.=+|||..
T Consensus 99 e~~~~g~~v~~~~g~~~~~~~w~g~~~~~D-ftnp~a~~ww~~~~~~~~~~---------G---vdg~w~D~~Ep~~ 162 (339)
T cd06604 99 EGLENDYFVKDPDGELYIGRVWPGLSAFPD-FTNPKVREWWGSLYKKFVDL---------G---VDGIWNDMNEPAV 162 (339)
T ss_pred HHHHCCeEEECCCCCEEEEEecCCCccccC-CCChHHHHHHHHHHHHHhhC---------C---CceEeecCCCccc
Confidence 1100 011100 00123 67899999998888876632 1 1223566889864
No 149
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=66.79 E-value=31 Score=37.37 Aligned_cols=113 Identities=12% Similarity=0.211 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHHCCCCEEEecc---cc----CCCcccc---cCCCCCC---C-hHHHHHHHHHHHHHHHcCCEEEEecC
Q 014373 62 RGKVSELFHQASSAGLTVCRTWA---FN----DGQWRAL---QTSPSVY---D-EEVFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~---~~----~~~~~~~---~~~~g~~---~-e~~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
.+..+++|..+|++|.|+|-+-. |. ..+|... .|. +.| + +.-...|..+|++|...||-|++++.
T Consensus 254 ~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFaps-srYgt~~s~~ri~efK~lVd~aHs~GI~VlLDVV 332 (757)
T KOG0470|consen 254 LGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPS-SRYGTPESPCRINEFKELVDKAHSLGIEVLLDVV 332 (757)
T ss_pred hhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeeccc-ccccCCCcccchHHHHHHHHHHhhCCcEEehhhh
Confidence 34566779999999999999943 21 1112110 000 111 0 11155678999999999999999973
Q ss_pred -CCcCCCCChhhHHHhhhhc----------CCCC-CCCCCc-CCCHHHHHHHHHHHHHHHhc
Q 014373 128 -NNWDAYGGKAQYVKWGKAA----------GLNL-TSDDEF-FSHTTLKSYYKAHVKTVLNR 176 (426)
Q Consensus 128 -~~w~~~gg~~~y~~W~~~~----------g~~~-~~~~~~-~~~~~~~~~~~~~~~~iv~r 176 (426)
++-.. +..+.+..+.+.. |... .....| ++.+++++...+-++.-|+.
T Consensus 333 ~sHaa~-n~~d~l~~fdGid~~~Yf~~~~r~~h~~~~~r~fn~~~~~V~rflL~nLr~WVtE 393 (757)
T KOG0470|consen 333 HSHAAK-NSKDGLNMFDGIDNSVYFHSGPRGYHNSWCSRLFNYNHPVVLRFLLSNLRWWVTE 393 (757)
T ss_pred hhhccc-CcCCcchhccCcCCceEEEeCCcccccccccccccCCCHHHHHHHHHHHHHHHHh
Confidence 22111 1111111111000 0000 011122 55688999888888888776
No 150
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=66.78 E-value=1.1e+02 Score=28.54 Aligned_cols=91 Identities=12% Similarity=0.091 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhHHHhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccc
Q 014373 103 EVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTN 182 (426)
Q Consensus 103 ~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg 182 (426)
...+.++++++.|++.|.+.|.... |..+ .-++..+..+.+.+.++.+++.
T Consensus 82 ~~~~~~~~~i~~a~~lga~~i~~~~------g~~~-----------------~~~~~~~~~~~~~~~l~~l~~~------ 132 (258)
T PRK09997 82 EFRDGVAAAIRYARALGNKKINCLV------GKTP-----------------AGFSSEQIHATLVENLRYAANM------ 132 (258)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEECC------CCCC-----------------CCCCHHHHHHHHHHHHHHHHHH------
Confidence 3455666777777777776554321 1000 0023345567777888888776
Q ss_pred ccccCCCcEEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCC
Q 014373 183 LTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKH 229 (426)
Q Consensus 183 ~~y~~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~ 229 (426)
.++..-.+++|..|-+..... ...-..++.+.|+++++..
T Consensus 133 --a~~~Gv~l~lE~~n~~~~~~~-----~~~~~~~~~~ll~~v~~~~ 172 (258)
T PRK09997 133 --LMKEDILLLIEPINHFDIPGF-----HLTGTRQALKLIDDVGCCN 172 (258)
T ss_pred --HHHcCCEEEEEeCCCcCCCCC-----ccCCHHHHHHHHHHhCCCC
Confidence 666667788888876432110 1111245566777777544
No 151
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=66.57 E-value=1.2e+02 Score=28.74 Aligned_cols=126 Identities=12% Similarity=0.144 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhHHH
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVK 141 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~ 141 (426)
....++.-+.+++.|+...-+........+...+.+. .-++.++.+.+.++.|++.|..+|+. +.. ..
T Consensus 51 ~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~l~~~~~~-~r~~~~~~~~~~i~~a~~lG~~~v~~-~~~-------~~--- 118 (279)
T TIGR00542 51 REQRLALVNAIIETGVRIPSMCLSAHRRFPLGSKDKA-VRQQGLEIMEKAIQLARDLGIRTIQL-AGY-------DV--- 118 (279)
T ss_pred HHHHHHHHHHHHHcCCCceeeecCCCccCcCCCcCHH-HHHHHHHHHHHHHHHHHHhCCCEEEe-cCc-------cc---
Confidence 4556666777788888776653211000110011111 12356888999999999999998753 210 00
Q ss_pred hhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCCCCCChhHHHHHHHHHHHH
Q 014373 142 WGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVY 221 (426)
Q Consensus 142 W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~ 221 (426)
. .+ -.+++..+.+.+.++.+++. -+.....++.|..+.+.... ..++.+.
T Consensus 119 ~---~~---------~~~~~~~~~~~~~l~~l~~~--------A~~~Gv~l~lE~~~~~~~~t----------~~~~~~l 168 (279)
T TIGR00542 119 Y---YE---------EHDEETRRRFREGLKEAVEL--------AARAQVTLAVEIMDTPFMSS----------ISKWLKW 168 (279)
T ss_pred c---cC---------cCCHHHHHHHHHHHHHHHHH--------HHHcCCEEEEeeCCCchhcC----------HHHHHHH
Confidence 0 00 01355677778888888886 55666778888654432211 1344555
Q ss_pred HHhcCCCC
Q 014373 222 VKSIDAKH 229 (426)
Q Consensus 222 Ir~~dp~~ 229 (426)
|+.++..+
T Consensus 169 i~~v~~~~ 176 (279)
T TIGR00542 169 DHYLNSPW 176 (279)
T ss_pred HHHcCCCc
Confidence 67666443
No 152
>KOG1066 consensus Glucosidase II catalytic (alpha) subunit and related enzymes, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=65.08 E-value=21 Score=38.42 Aligned_cols=38 Identities=29% Similarity=0.756 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHHHHHHHhcccccccccccCC-CcEEEEEeccCCCCCC
Q 014373 157 FSHTTLKSYYKAHVKTVLNRVNTFTNLTYKND-PTIFAWELMNEPRCTS 204 (426)
Q Consensus 157 ~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~-p~I~~weL~NEp~~~~ 204 (426)
|.+|++++.++.... ..+ |..+ |.++.|.=||||....
T Consensus 477 f~nP~~r~wW~~~fa--fd~--------y~g~t~nl~iWNDMNEPSVFn 515 (915)
T KOG1066|consen 477 FINPEARKWWKSQFA--FDR--------YEGSTPNLFIWNDMNEPSVFN 515 (915)
T ss_pred ccCHHHHHHHhhhcc--ccc--------ccCCCCceEEeccCCCccccC
Confidence 447999999988776 566 7766 7799999999998764
No 153
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=64.88 E-value=53 Score=32.11 Aligned_cols=99 Identities=15% Similarity=0.308 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHc-CCEEEEecCCCcCCCCChhhHHHhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccc
Q 014373 107 ALDFVISEAKKY-KIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTY 185 (426)
Q Consensus 107 ~lD~~l~~a~~~-Gi~vil~l~~~w~~~gg~~~y~~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y 185 (426)
.+.++..+.+++ +++|++.+.. |... .. -.....+++.++.|.+-+..++++ |
T Consensus 53 ~~~~~~~l~~~~~~~kvl~svgg-~~~s---~~--------------f~~~~~~~~~r~~fi~~i~~~~~~--------~ 106 (334)
T smart00636 53 NFGQLKALKKKNPGLKVLLSIGG-WTES---DN--------------FSSMLSDPASRKKFIDSIVSFLKK--------Y 106 (334)
T ss_pred hHHHHHHHHHhCCCCEEEEEEeC-CCCC---cc--------------hhHHHCCHHHHHHHHHHHHHHHHH--------c
Confidence 455566666664 9999998843 2110 00 112356788899999888888888 6
Q ss_pred cCCCcEEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhc---CCCCEEEecc
Q 014373 186 KNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSI---DAKHLVEIGL 235 (426)
Q Consensus 186 ~~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~---dp~~lV~~g~ 235 (426)
+=+.-.+-||- |.... ...+.+..+++++...+++. .++.+|++..
T Consensus 107 ~~DGidiDwE~---~~~~~-~d~~~~~~ll~~lr~~l~~~~~~~~~~~lsi~v 155 (334)
T smart00636 107 GFDGIDIDWEY---PGARG-DDRENYTALLKELREALDKEGAEGKGYLLTIAV 155 (334)
T ss_pred CCCeEEECCcC---CCCCc-cHHHHHHHHHHHHHHHHHHhcccCCceEEEEEe
Confidence 54433343543 22211 12456888889988888765 5566777653
No 154
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=63.49 E-value=23 Score=37.96 Aligned_cols=62 Identities=15% Similarity=0.060 Sum_probs=40.1
Q ss_pred HHHHHHHHHCCCCEEEeccc-cCCC---cccccCC-CCCC-------ChH--HHHHHHHHHHHHHHcCCEEEEecCC
Q 014373 66 SELFHQASSAGLTVCRTWAF-NDGQ---WRALQTS-PSVY-------DEE--VFKALDFVISEAKKYKIRLILSLTN 128 (426)
Q Consensus 66 ~~dl~~~~~~G~N~vRi~~~-~~~~---~~~~~~~-~g~~-------~e~--~l~~lD~~l~~a~~~Gi~vil~l~~ 128 (426)
+...+.++++|++.|=+-.+ ..++ |. .-|. .|.| ++. .++.++++++.|+++||+||++|.-
T Consensus 77 ~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~-~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlVp 152 (688)
T TIGR02455 77 DALWKALSEIGVQGIHNGPIKLSGGIRGRE-FTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDIIP 152 (688)
T ss_pred hHHHHHHHHhCCCEEEeCcceecccccccC-CCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 45678889999999877332 1110 10 0011 1222 222 3778999999999999999999853
No 155
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=62.73 E-value=1.3e+02 Score=28.95 Aligned_cols=150 Identities=10% Similarity=0.142 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC--------CcCCCC
Q 014373 63 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN--------NWDAYG 134 (426)
Q Consensus 63 ~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~--------~w~~~g 134 (426)
+..+.++..+.+.++..+=|=. .+ -.+..+.+.. .-|..++++|.++|--|.- +|..+-
T Consensus 30 ql~d~~~~~i~~~~f~llVVDp----s~--~g~~~~~~~~-------eelr~~~~gg~~pIAYlsIg~ae~yR~Ywd~~w 96 (300)
T COG2342 30 QLQDAYINEILNSPFDLLVVDP----SY--CGPFNTPWTI-------EELRTKADGGVKPIAYLSIGEAESYRFYWDKYW 96 (300)
T ss_pred hcccchHHHHhcCCCcEEEEec----cc--cCCCCCcCcH-------HHHHHHhcCCeeEEEEEechhhhhhhhHhhhhh
Confidence 4456888889998888777621 01 0111122332 2345667888777766521 121100
Q ss_pred ChhhHHHhhhhcCCC--CCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCC-CCCCCChhHH
Q 014373 135 GKAQYVKWGKAAGLN--LTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPR-CTSDPSGDTL 211 (426)
Q Consensus 135 g~~~y~~W~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~-~~~~~~~~~~ 211 (426)
- ..-+.|....... ......|| +|+.+...+.+++++..- -|.|+ |-| .|=+|.-.=+-. ..........
T Consensus 97 ~-~~~p~wLg~edP~W~Gny~VkYW-~~eWkdii~~~l~rL~d~--GfdGv-yLD--~VD~y~Y~~~~~~~~~~~~~k~m 169 (300)
T COG2342 97 L-TGRPDWLGEEDPEWPGNYAVKYW-EPEWKDIIRSYLDRLIDQ--GFDGV-YLD--VVDAYWYVEWNDRETGVNAAKKM 169 (300)
T ss_pred h-cCCcccccCCCCCCCCCceeecc-CHHHHHHHHHHHHHHHHc--cCceE-EEe--eechHHHHHHhcccccccHHHHH
Confidence 0 0001121110000 00122344 588888889999988876 34444 222 232331111111 0000113567
Q ss_pred HHHHHHHHHHHHhcCCCCEEEe
Q 014373 212 QSWIQEMAVYVKSIDAKHLVEI 233 (426)
Q Consensus 212 ~~w~~~~~~~Ir~~dp~~lV~~ 233 (426)
.+|+.+++.++|...|. ++.+
T Consensus 170 ~~~i~~i~~~~ra~~~~-~~Vi 190 (300)
T COG2342 170 VKFIAAIAEYARAANPL-FRVI 190 (300)
T ss_pred HHHHHHHHHHHHhcCCc-EEEE
Confidence 78999999999999999 4443
No 156
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=62.33 E-value=92 Score=31.04 Aligned_cols=89 Identities=18% Similarity=0.228 Sum_probs=57.2
Q ss_pred CcEEEe---CCeEEECCeE-EEEEEeeccchhhhccCCCChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCC
Q 014373 26 QMVQKQ---GNQFVVNDQP-FYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYD 101 (426)
Q Consensus 26 ~fv~~~---g~~f~~~G~~-~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~ 101 (426)
..|.+. ++-..-++++ +.++|-+.- .+++.+.+.-+.+++.|++.+|--.|-. ..+|..|.
T Consensus 83 ~~v~v~~~~~~v~iGg~~~l~vIAGPCsI---------Es~eq~l~~A~~lk~~g~~~~r~g~~kp------Rtsp~sf~ 147 (352)
T PRK13396 83 SEVVVPTPNGPVPFGENHPVVVVAGPCSV---------ENEEMIVETAKRVKAAGAKFLRGGAYKP------RTSPYAFQ 147 (352)
T ss_pred ceEEEecCcCCeEecCCCeEEEEEeCCcc---------cCHHHHHHHHHHHHHcCCCEEEeeeecC------CCCCcccC
Confidence 345554 3333335564 567785432 3467888888899999999999644421 12344443
Q ss_pred hHHHHHHHHHHHHHHHcCCEEEEecCCC
Q 014373 102 EEVFKALDFVISEAKKYKIRLILSLTNN 129 (426)
Q Consensus 102 e~~l~~lD~~l~~a~~~Gi~vil~l~~~ 129 (426)
.-.-+.|+.+-+.+++.||.++-++++.
T Consensus 148 G~g~~gl~~L~~~~~e~Gl~~~tev~d~ 175 (352)
T PRK13396 148 GHGESALELLAAAREATGLGIITEVMDA 175 (352)
T ss_pred CchHHHHHHHHHHHHHcCCcEEEeeCCH
Confidence 3335556666678999999999998753
No 157
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=60.89 E-value=42 Score=31.91 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=52.9
Q ss_pred ECCeEEEEEEeeccchhhhccCCCChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHH
Q 014373 37 VNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAK 116 (426)
Q Consensus 37 ~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~ 116 (426)
-+|+++++.|-+.. .+.+.+.+.-+.+++.|.++.|-..+- + ..+|..|..-..+.|..+-+.|+
T Consensus 22 g~~~~~~IAGpc~i---------e~~~~~~~~A~~lk~~~~k~~r~~~~K----p--Rtsp~s~~g~g~~gl~~l~~~~~ 86 (260)
T TIGR01361 22 GEGSPIVIAGPCSV---------ESEEQIMETARFVKEAGAKILRGGAFK----P--RTSPYSFQGLGEEGLKLLRRAAD 86 (260)
T ss_pred cCCcEEEEEeCCcc---------CCHHHHHHHHHHHHHHHHHhccCceec----C--CCCCccccccHHHHHHHHHHHHH
Confidence 35778888885542 245677788888889999988865442 1 12233333333556667777899
Q ss_pred HcCCEEEEecCCC
Q 014373 117 KYKIRLILSLTNN 129 (426)
Q Consensus 117 ~~Gi~vil~l~~~ 129 (426)
+.||.++.+.++.
T Consensus 87 ~~Gl~~~t~~~d~ 99 (260)
T TIGR01361 87 EHGLPVVTEVMDP 99 (260)
T ss_pred HhCCCEEEeeCCh
Confidence 9999999998764
No 158
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=60.37 E-value=55 Score=31.39 Aligned_cols=109 Identities=13% Similarity=0.128 Sum_probs=62.7
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCC-C-CCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCC---
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSP-S-VYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGG--- 135 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~-g-~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg--- 135 (426)
+.+...+.++.++++|+..|=| |.+|......+ . ......-..|.++++-|++.|+.|+|-.+.. ..++
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlv----D~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~--~~~~~~~ 103 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLV----DAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSE--TGGNVAN 103 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEE----BTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECC--HTTBHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEe----ccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCC--cchhhHh
Confidence 5789999999999999999887 23353211000 0 0111123567899999999999999877543 2121
Q ss_pred ----hhhHHHhhhhcCCCCCCCCCcCC--CHHHHHHHHHHHHHHHhc
Q 014373 136 ----KAQYVKWGKAAGLNLTSDDEFFS--HTTLKSYYKAHVKTVLNR 176 (426)
Q Consensus 136 ----~~~y~~W~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~iv~r 176 (426)
++....+....|+.. -..+|+. +..+.+.|.+.++..+++
T Consensus 104 ~~~~~~~~f~~~~~~Gv~G-vKidF~~~d~Q~~v~~y~~i~~~AA~~ 149 (273)
T PF10566_consen 104 LEKQLDEAFKLYAKWGVKG-VKIDFMDRDDQEMVNWYEDILEDAAEY 149 (273)
T ss_dssp HHCCHHHHHHHHHHCTEEE-EEEE--SSTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCE-EeeCcCCCCCHHHHHHHHHHHHHHHHc
Confidence 122222333334310 1235555 467899999999998886
No 159
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=60.06 E-value=1.5e+02 Score=27.78 Aligned_cols=132 Identities=8% Similarity=0.075 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHCCCCEEEeccccCCCcc-cccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhHHH
Q 014373 63 GKVSELFHQASSAGLTVCRTWAFNDGQWR-ALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVK 141 (426)
Q Consensus 63 ~~~~~dl~~~~~~G~N~vRi~~~~~~~~~-~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~ 141 (426)
..+++.-+.+++.|+.++=+...... ++ .+-..+...-++.++.+++.++.|++.|.+.|+..... .+.
T Consensus 47 ~~~~~l~~~~~~~gl~v~s~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~----~~~----- 116 (275)
T PRK09856 47 GGIKQIKALAQTYQMPIIGYTPETNG-YPYNMMLGDEHMRRESLDMIKLAMDMAKEMNAGYTLISAAH----AGY----- 116 (275)
T ss_pred hHHHHHHHHHHHcCCeEEEecCcccC-cCccccCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCC----CCC-----
Confidence 34555556777888876654321111 11 00000111224678999999999999999998652110 000
Q ss_pred hhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCCCCCChhHHHHHHHHHHHH
Q 014373 142 WGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVY 221 (426)
Q Consensus 142 W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~ 221 (426)
--+..+..+.+.+.++.++.. -+...-.++.|..+...... ..=..++.+.
T Consensus 117 --------------~~~~~~~~~~~~~~l~~l~~~--------a~~~gv~l~iE~~~~~~~~~-------~~t~~~~~~l 167 (275)
T PRK09856 117 --------------LTPPNVIWGRLAENLSELCEY--------AENIGMDLILEPLTPYESNV-------VCNANDVLHA 167 (275)
T ss_pred --------------CCCHHHHHHHHHHHHHHHHHH--------HHHcCCEEEEecCCCCcccc-------cCCHHHHHHH
Confidence 012334556666777777765 44444556677554222111 1113567777
Q ss_pred HHhcC-CCCEEEe
Q 014373 222 VKSID-AKHLVEI 233 (426)
Q Consensus 222 Ir~~d-p~~lV~~ 233 (426)
++.++ |+.-+.+
T Consensus 168 ~~~~~~~~v~~~~ 180 (275)
T PRK09856 168 LALVPSPRLFSMV 180 (275)
T ss_pred HHHcCCCcceeEE
Confidence 78776 5544443
No 160
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=59.68 E-value=1.1e+02 Score=30.40 Aligned_cols=104 Identities=10% Similarity=0.211 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHH-cCCEEEEecCCCcCCCCChhhHHHhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccc
Q 014373 106 KALDFVISEAKK-YKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLT 184 (426)
Q Consensus 106 ~~lD~~l~~a~~-~Gi~vil~l~~~w~~~gg~~~y~~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~ 184 (426)
+.+.++..+.++ .++||++.+- .|..... . + ..+..+++.++.|.+-+..++++
T Consensus 56 ~~~~~~~~lk~~~p~lkvlisiG-G~~~~~~--~---f-----------~~~~~~~~~r~~fi~~iv~~l~~-------- 110 (362)
T cd02872 56 GLYERFNALKEKNPNLKTLLAIG-GWNFGSA--K---F-----------SAMAASPENRKTFIKSAIAFLRK-------- 110 (362)
T ss_pred hHHHHHHHHHhhCCCceEEEEEc-CCCCCcc--h---h-----------HHHhCCHHHHHHHHHHHHHHHHH--------
Confidence 344555544433 4899999883 2321100 0 1 12356788888898888888888
Q ss_pred ccCCCcEEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCEEEecc
Q 014373 185 YKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIGL 235 (426)
Q Consensus 185 y~~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~g~ 235 (426)
|+=+.-.+-||--+-.. ....+.+.+..+++++.+.+++..++.++++..
T Consensus 111 ~~~DGidiDwE~p~~~~-~~~~d~~~~~~ll~~lr~~l~~~~~~~~ls~av 160 (362)
T cd02872 111 YGFDGLDLDWEYPGQRG-GPPEDKENFVTLLKELREAFEPEAPRLLLTAAV 160 (362)
T ss_pred cCCCCeeeeeeccccCC-CCHHHHHHHHHHHHHHHHHHHhhCcCeEEEEEe
Confidence 66565666677543221 111124568889999999998876677777653
No 161
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=59.65 E-value=34 Score=32.74 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014373 63 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSL 126 (426)
Q Consensus 63 ~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l 126 (426)
+..+.+++...+.|+..||++... + .++.+...++.|+++|+++.+.+
T Consensus 91 ~~~~~di~~~~~~g~~~iri~~~~--------------~--~~~~~~~~i~~ak~~G~~v~~~i 138 (275)
T cd07937 91 DVVELFVEKAAKNGIDIFRIFDAL--------------N--DVRNLEVAIKAVKKAGKHVEGAI 138 (275)
T ss_pred HHHHHHHHHHHHcCCCEEEEeecC--------------C--hHHHHHHHHHHHHHCCCeEEEEE
Confidence 457889999999999999995421 1 16778889999999999988765
No 162
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=58.97 E-value=1.6e+02 Score=27.77 Aligned_cols=64 Identities=16% Similarity=0.180 Sum_probs=45.9
Q ss_pred CChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCC--CCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014373 60 STRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPS--VYDEEVFKALDFVISEAKKYKIRLILSL 126 (426)
Q Consensus 60 ~~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g--~~~e~~l~~lD~~l~~a~~~Gi~vil~l 126 (426)
.+.+.+.+.++.+++.|+.+==+++ |..|..- ...- .+|++.+.....+++.++++|+++++.+
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~l--D~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~ 86 (265)
T cd06589 21 GDQDKVLEVIDGMRENDIPLDGFVL--DDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWI 86 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCccEEEE--CcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEe
Confidence 3578899999999999998555543 2223211 1122 4667778888999999999999999976
No 163
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=58.81 E-value=61 Score=31.74 Aligned_cols=125 Identities=14% Similarity=0.181 Sum_probs=72.2
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCC--CCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhh
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTS--PSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQ 138 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~--~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~ 138 (426)
+.+.+.+.++.+++.|+.+==+++ |..|-. ... .-.+|.+.|.....+|+.++++|++|++.++..-.. +.+.
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~l--D~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~--~~~~ 96 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQ--DWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFGP--ETEN 96 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEE--echhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcCC--CChh
Confidence 568899999999999887544432 111100 001 123577777788899999999999999876432111 1122
Q ss_pred HHHhhhh-------cCCC------C-CCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCC
Q 014373 139 YVKWGKA-------AGLN------L-TSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRC 202 (426)
Q Consensus 139 y~~W~~~-------~g~~------~-~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~ 202 (426)
|..-... .|.. . ..-.+ |++|++++.+.+.+++.+.. ++ .-.-|.=+|||..
T Consensus 97 y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~D-ftnp~a~~w~~~~~~~~~~~--------~G---vdg~w~D~~Ep~~ 162 (319)
T cd06591 97 YKEMDEKGYLIKTDRGPRVTMQFGGNTRFYD-ATNPEAREYYWKQLKKNYYD--------KG---VDAWWLDAAEPEY 162 (319)
T ss_pred HHHHHHCCEEEEcCCCCeeeeeCCCCccccC-CCCHHHHHHHHHHHHHHhhc--------CC---CcEEEecCCCCCc
Confidence 2221110 0000 0 01122 67899999888777654433 22 2234677999864
No 164
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=58.35 E-value=51 Score=33.29 Aligned_cols=50 Identities=24% Similarity=0.351 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
.+.++.-++...+.|++++|+|-. +. | -..|...+.+++++|..+..++.
T Consensus 97 DDvVe~Fv~ka~~nGidvfRiFDA-------lN------D---~RNl~~ai~a~kk~G~h~q~~i~ 146 (472)
T COG5016 97 DDVVEKFVEKAAENGIDVFRIFDA-------LN------D---VRNLKTAIKAAKKHGAHVQGTIS 146 (472)
T ss_pred hHHHHHHHHHHHhcCCcEEEechh-------cc------c---hhHHHHHHHHHHhcCceeEEEEE
Confidence 467889999999999999999631 11 1 34667899999999999888764
No 165
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=56.40 E-value=59 Score=31.79 Aligned_cols=124 Identities=12% Similarity=0.139 Sum_probs=72.0
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCCcccccC---C--CCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCC
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQT---S--PSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGG 135 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~---~--~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg 135 (426)
+.+.+.+.++.+++.|+.+==+++ +..|..... . .-.+|++.+-....+++..+++|+++++.++..-.. .
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~l--D~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~--~ 97 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAIL--DLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLK--N 97 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEE--echhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccC--C
Confidence 567899999999999987554432 112311110 1 123566677777899999999999999987532111 1
Q ss_pred hhhHHHhhhhcCC---------CC--------CCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEecc
Q 014373 136 KAQYVKWGKAAGL---------NL--------TSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMN 198 (426)
Q Consensus 136 ~~~y~~W~~~~g~---------~~--------~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~N 198 (426)
.+.|..-. ..|. +. ..-.+ |++|++++.+.+.++.+.+ .+ .-.-|.=+|
T Consensus 98 ~~~y~e~~-~~g~l~~~~~~~~~~~~~~w~g~~~~~D-ftnp~a~~w~~~~~~~~~~---------~G---vdg~w~D~~ 163 (317)
T cd06598 98 SKNWGEAV-KAGALLKKDQGGVPTLFDFWFGNTGLID-WFDPAAQAWFHDNYKKLID---------QG---VTGWWGDLG 163 (317)
T ss_pred chhHHHHH-hCCCEEEECCCCCEeeeeccCCCccccC-CCCHHHHHHHHHHHHHhhh---------CC---ccEEEecCC
Confidence 12222110 0111 00 01123 5789999999988887633 21 112366799
Q ss_pred CCCC
Q 014373 199 EPRC 202 (426)
Q Consensus 199 Ep~~ 202 (426)
||..
T Consensus 164 Ep~~ 167 (317)
T cd06598 164 EPEV 167 (317)
T ss_pred Cccc
Confidence 9853
No 166
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=56.26 E-value=1.5e+02 Score=26.44 Aligned_cols=93 Identities=12% Similarity=0.198 Sum_probs=55.2
Q ss_pred HHHHHHHHc--CCEEEEecCCCcCCCCChhhHHHhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccC
Q 014373 110 FVISEAKKY--KIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKN 187 (426)
Q Consensus 110 ~~l~~a~~~--Gi~vil~l~~~w~~~gg~~~y~~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~ 187 (426)
..+..+++. |++|++.+... ... . ......+++.++.|.+.+..++++ |+=
T Consensus 53 ~~i~~l~~~~~g~kv~~sigg~-~~~-------------~-----~~~~~~~~~~~~~f~~~~~~~v~~--------~~~ 105 (210)
T cd00598 53 GALEELASKKPGLKVLISIGGW-TDS-------------S-----PFTLASDPASRAAFANSLVSFLKT--------YGF 105 (210)
T ss_pred HHHHHHHHhCCCCEEEEEEcCC-CCC-------------C-----CchhhcCHHHHHHHHHHHHHHHHH--------cCC
Confidence 345555555 99999998431 100 0 002356788888888888888888 665
Q ss_pred CCcEEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCEEEec
Q 014373 188 DPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIG 234 (426)
Q Consensus 188 ~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~g 234 (426)
+.--+-||-...... ...+.+..+++++.+.+++. +-++++.
T Consensus 106 DGidiD~E~~~~~~~---~~~~~~~~ll~~lr~~l~~~--~~~ls~a 147 (210)
T cd00598 106 DGVDIDWEYPGAADN---SDRENFITLLRELRSALGAA--NYLLTIA 147 (210)
T ss_pred CceEEeeeCCCCcCc---cHHHHHHHHHHHHHHHhccc--CcEEEEE
Confidence 555555654322211 12356777777777766543 4566654
No 167
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=55.20 E-value=1.9e+02 Score=27.32 Aligned_cols=120 Identities=15% Similarity=0.182 Sum_probs=70.1
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCC----hHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChh
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYD----EEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKA 137 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~----e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~ 137 (426)
.+..++.-+.+++.|+.+.=+..... . .+ .++..+ ++.++.+.+.++.|++.|...|.. +. + .
T Consensus 56 ~~~~~~l~~~l~~~gl~i~~~~~~~~--~-~~--~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~-~~------~-~ 122 (283)
T PRK13209 56 REQRLALVNALVETGFRVNSMCLSAH--R-RF--PLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQL-AG------Y-D 122 (283)
T ss_pred HHHHHHHHHHHHHcCCceeEEecccc--c-cc--CCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE-CC------c-c
Confidence 45677777788899998766532110 0 01 112222 456888999999999999998763 21 0 0
Q ss_pred hHHHhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCCCCCChhHHHHHHHH
Q 014373 138 QYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQE 217 (426)
Q Consensus 138 ~y~~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~ 217 (426)
.|. + ..+++..+.+.+.++.+++. -+.+...+++|..+.+... + ..+
T Consensus 123 ---~~~---~---------~~~~~~~~~~~~~l~~l~~~--------A~~~GV~i~iE~~~~~~~~---~-------~~~ 169 (283)
T PRK13209 123 ---VYY---E---------QANNETRRRFIDGLKESVEL--------ASRASVTLAFEIMDTPFMN---S-------ISK 169 (283)
T ss_pred ---ccc---c---------ccHHHHHHHHHHHHHHHHHH--------HHHhCCEEEEeecCCcccC---C-------HHH
Confidence 010 0 12355667777788888776 4555566777765433221 1 234
Q ss_pred HHHHHHhcCC
Q 014373 218 MAVYVKSIDA 227 (426)
Q Consensus 218 ~~~~Ir~~dp 227 (426)
+...|++++.
T Consensus 170 ~~~ll~~v~~ 179 (283)
T PRK13209 170 ALGYAHYLNS 179 (283)
T ss_pred HHHHHHHhCC
Confidence 5566666653
No 168
>PRK12677 xylose isomerase; Provisional
Probab=54.64 E-value=27 Score=35.21 Aligned_cols=65 Identities=17% Similarity=0.175 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHc--CCEEEEecC
Q 014373 63 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKY--KIRLILSLT 127 (426)
Q Consensus 63 ~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~--Gi~vil~l~ 127 (426)
+.+.+-++.++++|++.|.+|.-.++..-..+...-..-+...+.|+.+.+.|+++ ||++.|...
T Consensus 114 ~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~laIEpk 180 (384)
T PRK12677 114 RKVLRNIDLAAELGAKTYVMWGGREGAEYDAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFALEPK 180 (384)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeCCCCccCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEccC
Confidence 44678889999999999999853222100011110001123346677888889884 599888754
No 169
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=54.62 E-value=55 Score=33.94 Aligned_cols=50 Identities=14% Similarity=0.189 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
.+.++.-++.+++.|+.++|++-... -.+.+...++.+++.|..+.+++.
T Consensus 104 ddvv~~fv~~a~~~Gidi~Rifd~ln----------------d~~n~~~ai~~ak~~G~~~~~~i~ 153 (468)
T PRK12581 104 DDIVDKFISLSAQNGIDVFRIFDALN----------------DPRNIQQALRAVKKTGKEAQLCIA 153 (468)
T ss_pred chHHHHHHHHHHHCCCCEEEEcccCC----------------CHHHHHHHHHHHHHcCCEEEEEEE
Confidence 35677789999999999999964211 156777899999999999877664
No 170
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=54.11 E-value=78 Score=29.43 Aligned_cols=85 Identities=13% Similarity=0.066 Sum_probs=52.0
Q ss_pred EEEEEeeccchhhhccCCCChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCE
Q 014373 42 FYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIR 121 (426)
Q Consensus 42 ~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~ 121 (426)
++++|.|+.|... ..+.+++|++.++++|+.-|=+-... ..|.+| +..+.+++++|. ||-
T Consensus 58 IRPRgGdFvY~~~------E~~iM~~DI~~~~~lG~~GVV~G~lt---------~dg~iD---~~~le~Li~aA~--gL~ 117 (241)
T COG3142 58 IRPRGGDFVYSDD------ELEIMLEDIRLARELGVQGVVLGALT---------ADGNID---MPRLEKLIEAAG--GLG 117 (241)
T ss_pred EecCCCCcccChH------HHHHHHHHHHHHHHcCCCcEEEeeec---------CCCccC---HHHHHHHHHHcc--CCc
Confidence 3567777654321 24688999999999999988774432 346777 555667778776 443
Q ss_pred EEEecCCCcCCCCChhhHHHhhhhcCC
Q 014373 122 LILSLTNNWDAYGGKAQYVKWGKAAGL 148 (426)
Q Consensus 122 vil~l~~~w~~~gg~~~y~~W~~~~g~ 148 (426)
+++|-..+..........|.-..|.
T Consensus 118 --vTFHrAFD~~~d~~~ale~li~~Gv 142 (241)
T COG3142 118 --VTFHRAFDECPDPLEALEQLIELGV 142 (241)
T ss_pred --eeeehhhhhcCCHHHHHHHHHHCCC
Confidence 3555444333333344556544443
No 171
>PRK09989 hypothetical protein; Provisional
Probab=54.08 E-value=32 Score=32.27 Aligned_cols=61 Identities=8% Similarity=0.030 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014373 63 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 63 ~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
+.+++-++.++++|+..|+++.. +..-...+....+...+.|.++.+.|+++|+++.+...
T Consensus 85 ~~l~~~i~~A~~lg~~~v~v~~g----~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~l 145 (258)
T PRK09989 85 ADIDLALEYALALNCEQVHVMAG----VVPAGEDAERYRAVFIDNLRYAADRFAPHGKRILVEAL 145 (258)
T ss_pred HHHHHHHHHHHHhCcCEEEECcc----CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 45677888889999999998532 10000000111234668889999999999999988753
No 172
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=53.21 E-value=35 Score=30.96 Aligned_cols=46 Identities=11% Similarity=0.106 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEE
Q 014373 63 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRL 122 (426)
Q Consensus 63 ~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~v 122 (426)
-.++.-++.+++||.+.|.++.+. | .+.++.|..+.++|.++|+++
T Consensus 135 V~vetAiaml~dmG~~SiKffPm~-----------G---l~~leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 135 VPVETAIAMLKDMGGSSIKFFPMG-----------G---LKHLEELKAVAKACARNGFTL 180 (218)
T ss_dssp EEHHHHHHHHHHTT--EEEE---T-----------T---TTTHHHHHHHHHHHHHCT-EE
T ss_pred ccHHHHHHHHHHcCCCeeeEeecC-----------C---cccHHHHHHHHHHHHHcCcee
Confidence 357899999999999999996431 1 234777888999999999988
No 173
>PTZ00333 triosephosphate isomerase; Provisional
Probab=52.82 E-value=1.5e+02 Score=28.01 Aligned_cols=48 Identities=10% Similarity=0.147 Sum_probs=33.1
Q ss_pred HHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014373 70 HQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 70 ~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
..++++|++.+=+- +++. ...|+|. =+.+.+-+..|.++||.+|+|+-
T Consensus 83 ~mL~d~G~~~viiG-HSER--------R~~f~Et-d~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 83 EMLKDLGINWTILG-HSER--------RQYFGET-NEIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred HHHHHcCCCEEEEC-cccc--------cCcCCCC-cHHHHHHHHHHHHCCCEEEEEcC
Confidence 67889999999883 3331 1122222 24556778899999999999984
No 174
>COG3661 AguA Alpha-glucuronidase [Carbohydrate transport and metabolism]
Probab=52.24 E-value=1.3e+02 Score=30.75 Aligned_cols=61 Identities=11% Similarity=0.130 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
..++.+.-+.+++.|+|.+=+-..+. ...+.--++...+..+-++.+.-+.+|||+.+++.
T Consensus 182 ~qR~kDYAR~laSiGINg~v~NNVNv-----k~~e~~lit~~fl~k~aklAdiFR~YGIK~yLsin 242 (684)
T COG3661 182 DQRMKDYARALASIGINGTVLNNVNV-----KKAESYLITAPFLAKAAKLADIFRPYGIKVYLSIN 242 (684)
T ss_pred hHHHHHHHHHHhhcCcceEEeccccc-----chhhhheechHhHHHHHHHHHHhhhccceEEEEec
Confidence 46788888999999999887732211 01111124556788888999999999999999973
No 175
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=52.00 E-value=2.3e+02 Score=27.59 Aligned_cols=49 Identities=12% Similarity=0.266 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhHHHhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhc
Q 014373 106 KALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNR 176 (426)
Q Consensus 106 ~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r 176 (426)
..+..-|..+++.|+||++.+- |-. + .....+++.++.|.+.+..+++.
T Consensus 60 ~~~~~~i~~~q~~G~KVllSiG-------G~~---------~------~~~~~~~~~~~~fa~sl~~~~~~ 108 (312)
T cd02871 60 AEFKADIKALQAKGKKVLISIG-------GAN---------G------HVDLNHTAQEDNFVDSIVAIIKE 108 (312)
T ss_pred HHHHHHHHHHHHCCCEEEEEEe-------CCC---------C------ccccCCHHHHHHHHHHHHHHHHH
Confidence 3456778889999999999872 210 1 01145677788888888888877
No 176
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=51.65 E-value=25 Score=33.48 Aligned_cols=61 Identities=15% Similarity=-0.002 Sum_probs=42.2
Q ss_pred HHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC
Q 014373 66 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN 128 (426)
Q Consensus 66 ~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~ 128 (426)
.++++.+.+.|+..||++.-... . -.+..-+.--++.++.+..++..|+++|++|.+.+.+
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~S~-~-~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ed 134 (262)
T cd07948 74 MDDARIAVETGVDGVDLVFGTSP-F-LREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSED 134 (262)
T ss_pred HHHHHHHHHcCcCEEEEEEecCH-H-HHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 35788889999999999642110 0 0011112223677999999999999999999998743
No 177
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=51.15 E-value=1.5e+02 Score=30.25 Aligned_cols=126 Identities=19% Similarity=0.318 Sum_probs=74.3
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCC-hhhH
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGG-KAQY 139 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg-~~~y 139 (426)
+.+.+.+.++.+++.|+.+==+++ .. .|.. ....-.+|++.+..+..+++.++++|+++++.++.+-..... ...|
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~i-D~-~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~ 117 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWI-DD-DYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENY 117 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE--G-GGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHH
T ss_pred CHHHHHHHHHHHHHcCCCccceec-cc-cccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhh
Confidence 468899999999999998666643 11 1211 111235677778888999999999999999987543221111 1233
Q ss_pred HHhhhhcCCCCC----------------CCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCC
Q 014373 140 VKWGKAAGLNLT----------------SDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRC 202 (426)
Q Consensus 140 ~~W~~~~g~~~~----------------~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~ 202 (426)
.... ..|.-+. ...+ |++|++++.+.+.++.+++. ++-+ .-|.=+|||..
T Consensus 118 ~~~~-~~~~~v~~~~g~~~~~~~w~g~~~~~D-ftnp~a~~w~~~~~~~~~~~--------~Gvd---g~w~D~~E~~~ 183 (441)
T PF01055_consen 118 DEAK-EKGYLVKNPDGSPYIGRVWPGKGGFID-FTNPEARDWWKEQLKELLDD--------YGVD---GWWLDFGEPSS 183 (441)
T ss_dssp HHHH-HTT-BEBCTTSSB-EEEETTEEEEEB--TTSHHHHHHHHHHHHHHHTT--------ST-S---EEEEESTTTBS
T ss_pred hhHh-hcCceeecccCCcccccccCCcccccC-CCChhHHHHHHHHHHHHHhc--------cCCc---eEEeecCCccc
Confidence 3221 1121110 0112 67899999999999988776 4322 33677999986
No 178
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=50.76 E-value=43 Score=34.54 Aligned_cols=49 Identities=12% Similarity=0.259 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSL 126 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l 126 (426)
.+.++++++.+.+.|++.||++.... + ...+...++.|+++|+.+.+++
T Consensus 95 ddvv~~~v~~A~~~Gvd~irif~~ln--------------d--~~n~~~~v~~ak~~G~~v~~~i 143 (448)
T PRK12331 95 DDVVESFVQKSVENGIDIIRIFDALN--------------D--VRNLETAVKATKKAGGHAQVAI 143 (448)
T ss_pred hhhHHHHHHHHHHCCCCEEEEEEecC--------------c--HHHHHHHHHHHHHcCCeEEEEE
Confidence 35678899999999999999965311 0 1357789999999999887665
No 179
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=50.07 E-value=73 Score=31.46 Aligned_cols=116 Identities=13% Similarity=0.248 Sum_probs=70.6
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhHH
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYV 140 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~ 140 (426)
+.+.+++.++.+++.++-.==+|. |..|.. .-..-.+|++.|.....+++..++.|+++++.++-.-. +|.
T Consensus 22 ~~~ev~~v~~~~r~~~IP~D~i~l--Didy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~-~g~----- 92 (332)
T cd06601 22 NRSDLEEVVEGYRDNNIPLDGLHV--DVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS-YGG----- 92 (332)
T ss_pred CHHHHHHHHHHHHHcCCCCceEEE--cCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee-cCc-----
Confidence 568899999999999987544432 212210 00122356666666788999999999999887653321 111
Q ss_pred HhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCC
Q 014373 141 KWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCT 203 (426)
Q Consensus 141 ~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~ 203 (426)
.|.. .+ .-.+ |++|++++.+.+..+.+.+- + --..|.=+|||...
T Consensus 93 ~~~~-~~----~~pD-ftnp~ar~wW~~~~~~l~~~---------G---v~~~W~DmnEp~~~ 137 (332)
T cd06601 93 GLGS-PG----LYPD-LGRPDVREWWGNQYKYLFDI---------G---LEFVWQDMTTPAIM 137 (332)
T ss_pred cCCC-Cc----eeeC-CCCHHHHHHHHHHHHHHHhC---------C---CceeecCCCCcccc
Confidence 1210 01 1123 57899988887777665542 1 11248889999754
No 180
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=50.03 E-value=26 Score=33.84 Aligned_cols=61 Identities=16% Similarity=0.048 Sum_probs=43.2
Q ss_pred HHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014373 65 VSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 65 ~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
..++++.+.+.|++.||++..... .. .+..-+.--++.++.+..+++.|+++|+++...+.
T Consensus 81 ~~~~ie~A~~~g~~~v~i~~~~s~-~~-~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~ 141 (287)
T PRK05692 81 NLKGLEAALAAGADEVAVFASASE-AF-SQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVS 141 (287)
T ss_pred CHHHHHHHHHcCCCEEEEEEecCH-HH-HHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEE
Confidence 357888889999999999753211 10 11122333467899999999999999999987664
No 181
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=49.18 E-value=28 Score=32.90 Aligned_cols=60 Identities=15% Similarity=0.050 Sum_probs=41.5
Q ss_pred HHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014373 66 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 66 ~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
.++++.+.+.|++.||+...... . .++..-+.-.++.++.+..+++.|+++|+.|.+.+.
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s~-~-~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~ 131 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVSD-I-HLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAE 131 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecCH-H-HHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeec
Confidence 56788889999999999642111 0 011111222467789999999999999999887653
No 182
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=49.10 E-value=67 Score=33.60 Aligned_cols=49 Identities=14% Similarity=0.200 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSL 126 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l 126 (426)
.+.++.+++..++.|+..+||+.... -++.+...++.+++.|..+...+
T Consensus 96 ddvv~~fv~~a~~~Gidi~RIfd~ln----------------dv~nl~~ai~~vk~ag~~~~~~i 144 (499)
T PRK12330 96 DEVVDRFVEKSAENGMDVFRVFDALN----------------DPRNLEHAMKAVKKVGKHAQGTI 144 (499)
T ss_pred hhHHHHHHHHHHHcCCCEEEEEecCC----------------hHHHHHHHHHHHHHhCCeEEEEE
Confidence 46889999999999999999964211 14778889999999999885554
No 183
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=48.98 E-value=65 Score=34.58 Aligned_cols=47 Identities=15% Similarity=0.214 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEE
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLIL 124 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil 124 (426)
.+.++.+++.+++.|+..+|++... |+ ++.+...++.|+++|..+..
T Consensus 96 ddvv~~~v~~a~~~Gid~~rifd~l--------------nd--~~~~~~ai~~ak~~G~~~~~ 142 (593)
T PRK14040 96 DDVVERFVERAVKNGMDVFRVFDAM--------------ND--PRNLETALKAVRKVGAHAQG 142 (593)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeeeC--------------Cc--HHHHHHHHHHHHHcCCeEEE
Confidence 3578899999999999999996321 11 45667778888888887543
No 184
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=48.56 E-value=58 Score=30.99 Aligned_cols=57 Identities=5% Similarity=0.112 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChH------HHHHHHHHHHHHHHcCCEEEEec
Q 014373 63 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEE------VFKALDFVISEAKKYKIRLILSL 126 (426)
Q Consensus 63 ~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~------~l~~lD~~l~~a~~~Gi~vil~l 126 (426)
..++..|+.++++|+.-|-=|. .+---.|.|.+. .+++==.+|..|++.||..+.-.
T Consensus 95 ~~~~~fl~~lk~~Gf~GV~NfP-------TvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~~yv 157 (268)
T PF09370_consen 95 RDMDRFLDELKELGFSGVQNFP-------TVGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLFTTAYV 157 (268)
T ss_dssp --HHHHHHHHHHHT-SEEEE-S--------GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE--EE
T ss_pred CcHHHHHHHHHHhCCceEEECC-------cceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeeeeee
Confidence 4788999999999999776531 111111222111 12222357888999998765544
No 185
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=48.36 E-value=94 Score=28.83 Aligned_cols=59 Identities=24% Similarity=0.290 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN 128 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~ 128 (426)
.+.+...++.+++.|++-|.|++|.||.- ..| ..++..|.++.+.+.+.|+--|.++..
T Consensus 45 ~~Hl~al~~~a~~~gv~~V~vH~f~DGRD----t~P----~S~~~yl~~l~~~l~~~~~g~IAsv~G 103 (223)
T PF06415_consen 45 IDHLFALIKLAKKQGVKKVYVHAFTDGRD----TPP----KSALKYLEELEEKLAEIGIGRIASVSG 103 (223)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEEE-SSS----S-T----TTHHHHHHHHHHHHHHHTCTEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEecCCCC----CCc----chHHHHHHHHHHHHHhhCCceEEEEec
Confidence 46788999999999999999999988731 112 456889999999999998877777743
No 186
>PRK14567 triosephosphate isomerase; Provisional
Probab=48.11 E-value=2.2e+02 Score=26.98 Aligned_cols=48 Identities=8% Similarity=0.043 Sum_probs=31.9
Q ss_pred HHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014373 70 HQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 70 ~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
..++++|++.+=+- +++. .-.|.|. -+.+.+-+..|.++||.+|+|+-
T Consensus 79 ~mLkd~G~~yviiG-HSER--------R~~f~Et-d~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 79 RMLEDIGCDYLLIG-HSER--------RSLFAES-DEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred HHHHHcCCCEEEEC-cccc--------cCccCCC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 56889999998883 3321 1122222 22345677789999999999984
No 187
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=48.01 E-value=51 Score=31.57 Aligned_cols=51 Identities=16% Similarity=0.305 Sum_probs=38.3
Q ss_pred HHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCC
Q 014373 65 VSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNN 129 (426)
Q Consensus 65 ~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~ 129 (426)
.++.|+.++++|+.-|-+=-+.. -+....+.++++++.|.+|.| +|++|..
T Consensus 108 ~~~~f~~~~~~Gv~GvKidF~~~------------d~Q~~v~~y~~i~~~AA~~~L--mvnfHg~ 158 (273)
T PF10566_consen 108 LDEAFKLYAKWGVKGVKIDFMDR------------DDQEMVNWYEDILEDAAEYKL--MVNFHGA 158 (273)
T ss_dssp HHHHHHHHHHCTEEEEEEE--SS------------TSHHHHHHHHHHHHHHHHTT---EEEETTS
T ss_pred HHHHHHHHHHcCCCEEeeCcCCC------------CCHHHHHHHHHHHHHHHHcCc--EEEecCC
Confidence 58889999999999998832211 257889999999999999976 6666643
No 188
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=47.59 E-value=80 Score=34.12 Aligned_cols=145 Identities=17% Similarity=0.195 Sum_probs=63.8
Q ss_pred HHHHHHHHcCCEEEEecCCCcCCCCChhhHHHhhhhcCCCCCCCCCcCCCHHHHHHH-HHHHHHHHhcccccccccccCC
Q 014373 110 FVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYY-KAHVKTVLNRVNTFTNLTYKND 188 (426)
Q Consensus 110 ~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~iv~r~n~~tg~~y~~~ 188 (426)
.+++.|+|++=.+.++.. .|.. +.|.+. | ...-|.++.....| .+++.-..+. |+=
T Consensus 116 ~L~~eAKkrNP~ikl~~L-~W~~-------PgW~~~-g-----~~~~~~~~~~~a~Y~~~wl~ga~~~--------~gl- 172 (669)
T PF02057_consen 116 WLMAEAKKRNPNIKLYGL-PWGF-------PGWVGN-G-----WNWPYDNPQLTAYYVVSWLLGAKKT--------HGL- 172 (669)
T ss_dssp HHHHHHHHH-TT-EEEEE-ES-B--------GGGGT-T-----SS-TTSSHHHHHHHHHHHHHHHHHH--------H---
T ss_pred hhHHHHHhhCCCCeEEEe-ccCC-------CccccC-C-----CCCcccchhhhhHHHHHHHHHHHHH--------hCC-
Confidence 577889888654444432 2432 347642 2 11124455554444 3555433333 332
Q ss_pred CcEEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCCccCCCCcccccccchhhhh-cC
Q 014373 189 PTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRN-HQ 267 (426)
Q Consensus 189 p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~np~~y~~~~g~d~~~~-~~ 267 (426)
.|--..++||-.. -..|++.+...+.+..-++.=.++.++.+.. . +.+...+ ..
T Consensus 173 -~idYvg~~NEr~~--------~~~~ik~lr~~l~~~gy~~vkiva~D~~~~~------------~----~~~m~~D~~l 227 (669)
T PF02057_consen 173 -DIDYVGIWNERGF--------DVNYIKWLRKALNSNGYNKVKIVAADNNWES------------I----SDDMLSDPEL 227 (669)
T ss_dssp ----EE-S-TTS-----------HHHHHHHHHHHHHTT-TT-EEEEEEE-STT------------H----HHHHHH-HHH
T ss_pred -CceEechhhccCC--------ChhHHHHHHHHHhhccccceEEEEeCCCccc------------h----hhhhhcCHHH
Confidence 3444457899864 2368888888888777765444554333210 0 0111111 11
Q ss_pred CCCcceEEEeccCCCccCCCChhHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 014373 268 TLGVDFASVHIYADSWISQTISDAHLQFTKSWMEAHIEDAEKYLRMPVLFTEFGVS 323 (426)
Q Consensus 268 ~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~l~~~~~~a~~~~~kPv~v~EfG~~ 323 (426)
...||+++.| ||.... .+.++. .+|||+-.|-+..
T Consensus 228 ~~avdvig~H-Y~~~~~-------------------~~~a~~-~~K~lW~SE~~s~ 262 (669)
T PF02057_consen 228 RNAVDVIGYH-YPGTYS-------------------SKNAKL-TGKPLWSSEDYST 262 (669)
T ss_dssp HHH--EEEEE-S-TT----------------------HHHHH-HT-EEEEEEEE-S
T ss_pred HhcccEeccc-cCCCCc-------------------HHHHHH-hCCCeEEcCCccc
Confidence 2468999999 565310 012333 6999999996554
No 189
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=47.35 E-value=62 Score=33.02 Aligned_cols=66 Identities=17% Similarity=0.303 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCC-----Ccc---cccCCCCCC---ChHHHHHHHHHHHHH-HHcCCEEEEecC
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDG-----QWR---ALQTSPSVY---DEEVFKALDFVISEA-KKYKIRLILSLT 127 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~-----~~~---~~~~~~g~~---~e~~l~~lD~~l~~a-~~~Gi~vil~l~ 127 (426)
-+.|++.|+.++++|.|+|-+-.+... .|. .++-.|--+ .+..++.+.++|..+ +++||..|.++.
T Consensus 21 ~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~DvV 98 (423)
T PF14701_consen 21 FSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDVV 98 (423)
T ss_pred HhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEEe
Confidence 469999999999999999998433211 121 111111111 123467888888888 589999999975
No 190
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=47.19 E-value=91 Score=30.38 Aligned_cols=61 Identities=15% Similarity=0.144 Sum_probs=41.4
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCC--CCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPS--VYDEEVFKALDFVISEAKKYKIRLILSL 126 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g--~~~e~~l~~lD~~l~~a~~~Gi~vil~l 126 (426)
+.+.+++.++.+++.|.+.|.++.-.....+. ..++ .+++ +.+..++++|+++|+.+.+-.
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~--~~~~~~~~~~---e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPG--DPPPDTQFSE---EELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCC--CCCcccCcCH---HHHHHHHHHHHHcCCEEEEEe
Confidence 46788899999999999999997521110110 1111 2443 456689999999999887754
No 191
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=47.04 E-value=36 Score=33.72 Aligned_cols=56 Identities=11% Similarity=0.106 Sum_probs=42.1
Q ss_pred HHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014373 65 VSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSL 126 (426)
Q Consensus 65 ~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l 126 (426)
..-..+.++++|.++|=+.++... ..+...+...++.|.++.++|+++||-+++.+
T Consensus 108 ~~~sve~a~~~GAdAVk~lv~~~~------d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 108 DNWSVRRIKEAGADAVKLLLYYRP------DEDDAINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred ccccHHHHHHcCCCEEEEEEEeCC------CcchHHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 334467799999999999775221 11222456889999999999999999999975
No 192
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=46.39 E-value=40 Score=35.73 Aligned_cols=66 Identities=12% Similarity=0.088 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCC--cccc-cCCCCCCCh--HHHHHHHHHHHHHHHcCCEEEEecC
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQ--WRAL-QTSPSVYDE--EVFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~--~~~~-~~~~g~~~e--~~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
..-+.+-++.++++|++++=+-.+.... +..+ ......+++ ..++.+..+++++.++||++|+++.
T Consensus 39 ~~GI~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~edf~~Li~~~h~~gi~ii~D~v 109 (545)
T KOG0471|consen 39 LKGITSKLDYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTEEDFKELILAMHKLGIKIIADLV 109 (545)
T ss_pred cccchhhhhHHHhcCCceEEeCCCcCCCHHHhccCccchhhhcccccHHHHHHHHHHHHhhcceEEEEeec
Confidence 4566788999999999988774332110 0000 001112232 2467888999999999999999973
No 193
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=46.23 E-value=56 Score=31.94 Aligned_cols=94 Identities=14% Similarity=0.281 Sum_probs=53.0
Q ss_pred HHHHHHHHcCCEEEEecCCCcCCCCChhhHHHhhhhcCCCCCCCCCcCC-CHHHHHHHHHHHHHHHhcccccccccccCC
Q 014373 110 FVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFS-HTTLKSYYKAHVKTVLNRVNTFTNLTYKND 188 (426)
Q Consensus 110 ~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~ 188 (426)
..+++|+|+|++|+=++.-.|+. +. .|.. .+.. +++-...+.+.+-+|++. |+=|
T Consensus 46 ~widaAHrnGV~vLGTiife~~~--~~----~~~~----------~ll~~~~~g~~~~A~kLi~ia~~--------yGFD 101 (311)
T PF03644_consen 46 GWIDAAHRNGVKVLGTIIFEWGG--GA----EWCE----------ELLEKDEDGSFPYADKLIEIAKY--------YGFD 101 (311)
T ss_dssp HHHHHHHHTT--EEEEEEEEEE----H----HHHH----------HHT---TTS--HHHHHHHHHHHH--------HT--
T ss_pred hhHHHHHhcCceEEEEEEecCCc--hH----HHHH----------HHHcCCcccccHHHHHHHHHHHH--------cCCC
Confidence 37899999999998887655432 21 2321 1122 333344556777788887 7754
Q ss_pred CcEEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCEEE
Q 014373 189 PTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVE 232 (426)
Q Consensus 189 p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~ 232 (426)
+|-|-=|-........+.+..|++.+.+..++ .|+..|.
T Consensus 102 ----Gw~iN~E~~~~~~~~~~~l~~F~~~l~~~~~~-~~~~~v~ 140 (311)
T PF03644_consen 102 ----GWLINIETPLSGPEDAENLIDFLKYLRKEAHE-NPGSEVI 140 (311)
T ss_dssp ----EEEEEEEESSTTGGGHHHHHHHHHHHHHHHHH-T-T-EEE
T ss_pred ----ceEEEecccCCchhHHHHHHHHHHHHHHHhhc-CCCcEEE
Confidence 45444444332111246799999999999999 8877663
No 194
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=45.86 E-value=48 Score=27.17 Aligned_cols=43 Identities=26% Similarity=0.438 Sum_probs=29.3
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEE
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLI 123 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vi 123 (426)
..+.+.+.++.+.++|+. ++|.+. |..+ +++++.|+++||+++
T Consensus 64 ~~~~~~~~v~~~~~~g~~--~v~~~~-----------g~~~-------~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 64 PPDKVPEIVDEAAALGVK--AVWLQP-----------GAES-------EELIEAAREAGIRVI 106 (116)
T ss_dssp -HHHHHHHHHHHHHHT-S--EEEE-T-----------TS---------HHHHHHHHHTT-EEE
T ss_pred CHHHHHHHHHHHHHcCCC--EEEEEc-----------chHH-------HHHHHHHHHcCCEEE
Confidence 367889999999999988 555432 2222 378899999999986
No 195
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=45.76 E-value=1.8e+02 Score=28.40 Aligned_cols=100 Identities=15% Similarity=0.309 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHH-cCCEEEEecCCCcCCCCChhhHHHhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccc
Q 014373 106 KALDFVISEAKK-YKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLT 184 (426)
Q Consensus 106 ~~lD~~l~~a~~-~Gi~vil~l~~~w~~~gg~~~y~~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~ 184 (426)
..+.++....++ .++||++.+-. |.....+ ...-.+++.++.|.+-+..++++
T Consensus 70 ~~~~~~~~lk~~~p~lkvl~siGG-~~~s~~f-----------------~~~~~~~~~r~~Fi~siv~~l~~-------- 123 (322)
T cd06548 70 GNFGQLRKLKQKNPHLKILLSIGG-WTWSGGF-----------------SDAAATEASRAKFADSAVDFIRK-------- 123 (322)
T ss_pred hHHHHHHHHHHhCCCCEEEEEEeC-CCCCCCc-----------------hhHhCCHHHHHHHHHHHHHHHHh--------
Confidence 344555554443 46999999832 3221111 12345788899999888888888
Q ss_pred ccCCCcEEEEEeccCCCCC-------CCCChhHHHHHHHHHHHHHHhcC----CCCEEEec
Q 014373 185 YKNDPTIFAWELMNEPRCT-------SDPSGDTLQSWIQEMAVYVKSID----AKHLVEIG 234 (426)
Q Consensus 185 y~~~p~I~~weL~NEp~~~-------~~~~~~~~~~w~~~~~~~Ir~~d----p~~lV~~g 234 (426)
|+=+.--+-||- |... .....+.+..+++++.+++++.. ++.++++.
T Consensus 124 ~~fDGidiDwE~---p~~~~~~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~~~~~~~Ls~a 181 (322)
T cd06548 124 YGFDGIDIDWEY---PGSGGAPGNVARPEDKENFTLLLKELREALDALGAETGRKYLLTIA 181 (322)
T ss_pred cCCCeEEECCcC---CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhccCCceEEEEE
Confidence 654444444652 3221 11124668888889988887753 45666664
No 196
>COG3622 Hfi Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]
Probab=44.84 E-value=70 Score=30.00 Aligned_cols=64 Identities=16% Similarity=0.047 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCC
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNN 129 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~ 129 (426)
+..++.-+.....+|+..|-+..-. ++.......+-....+.|.+..+.+.+.||+++|...|.
T Consensus 84 r~~v~~a~~ya~aLg~~~vh~mag~----~p~~~~~~~~~~t~venLr~aAd~l~~~gi~~liEplN~ 147 (260)
T COG3622 84 RLGVALAIEYATALGCKQVHCLAGI----PPEGVDTEAMWATFVENLRYAADLLAAEGIRLLIEPLNL 147 (260)
T ss_pred HhHHHHHHHHHHHhCCCceeeeecC----CCCCccHHHHHHHHHHHHHHHHHHHHhcCCEEEEecCCC
Confidence 5678888999999999966653210 001111122334567889999999999999999998776
No 197
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=44.57 E-value=1.1e+02 Score=29.12 Aligned_cols=76 Identities=17% Similarity=0.199 Sum_probs=51.3
Q ss_pred CCeEEEEEEeeccchhhhccCCCChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHH
Q 014373 38 NDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKK 117 (426)
Q Consensus 38 ~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~ 117 (426)
++...+++|-... .+.+.+...-...|+.|.+.+|--+|-. ..+|-.|.--..+.|..+-..+++
T Consensus 43 ~~~~~viAGPCsv---------Es~E~i~~~A~~vk~~Ga~~lRGgafKP------RTSPYsFQGlge~gL~~l~~a~~~ 107 (286)
T COG2876 43 GRALRVIAGPCSV---------ESEEQVRETAESVKAAGAKALRGGAFKP------RTSPYSFQGLGEEGLKLLKRAADE 107 (286)
T ss_pred CcceEEEecCccc---------CCHHHHHHHHHHHHHcchhhccCCcCCC------CCCcccccccCHHHHHHHHHHHHH
Confidence 4445666666642 2468888899999999999999865521 122322322334566777788999
Q ss_pred cCCEEEEecCC
Q 014373 118 YKIRLILSLTN 128 (426)
Q Consensus 118 ~Gi~vil~l~~ 128 (426)
+|+-++-.+.+
T Consensus 108 ~Gl~vvtEvm~ 118 (286)
T COG2876 108 TGLPVVTEVMD 118 (286)
T ss_pred cCCeeEEEecC
Confidence 99988887643
No 198
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=44.40 E-value=56 Score=31.10 Aligned_cols=47 Identities=17% Similarity=0.171 Sum_probs=37.5
Q ss_pred HHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC
Q 014373 66 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN 128 (426)
Q Consensus 66 ~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~ 128 (426)
.++++.+.+.|+..||+... ...++.+...++.|+++|+.|.+.+.+
T Consensus 85 ~~~l~~a~~~gv~~iri~~~----------------~~~~~~~~~~i~~ak~~G~~v~~~~~~ 131 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFH----------------KHEFDEALPLIKAIKEKGYEVFFNLMA 131 (266)
T ss_pred HHHHHHHhcCCcCEEEEecc----------------cccHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 56888889999999999431 123777888999999999999988743
No 199
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=44.06 E-value=86 Score=29.36 Aligned_cols=51 Identities=18% Similarity=0.307 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSL 126 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l 126 (426)
+..+++.++.++++|+++|=+ +++. + .+++ +..-++|+.++++|++|+..+
T Consensus 70 q~~~~~Yl~~~k~lGf~~IEi---S~G~---~-----~i~~---~~~~rlI~~~~~~g~~v~~Ev 120 (237)
T TIGR03849 70 KGKFDEYLNECDELGFEAVEI---SDGS---M-----EISL---EERCNLIERAKDNGFMVLSEV 120 (237)
T ss_pred hhhHHHHHHHHHHcCCCEEEE---cCCc---c-----CCCH---HHHHHHHHHHHhCCCeEeccc
Confidence 368899999999999999998 3321 1 1222 233478999999999999876
No 200
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=43.16 E-value=49 Score=30.44 Aligned_cols=45 Identities=7% Similarity=0.035 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCE
Q 014373 63 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIR 121 (426)
Q Consensus 63 ~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~ 121 (426)
-.++.-++.+++||.+.|.++.+. | .+.++.|..+.++|.++|++
T Consensus 135 V~vetAiaml~dmG~~SiKffPM~-----------G---l~~leE~~avA~aca~~g~~ 179 (236)
T TIGR03581 135 VPIETAIAMLKDMGGSSVKFFPMG-----------G---LKHLEEYAAVAKACAKHGFY 179 (236)
T ss_pred eeHHHHHHHHHHcCCCeeeEeecC-----------C---cccHHHHHHHHHHHHHcCCc
Confidence 467899999999999999996431 1 23366677778888888886
No 201
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=41.98 E-value=66 Score=23.11 Aligned_cols=47 Identities=23% Similarity=0.144 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014373 63 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSL 126 (426)
Q Consensus 63 ~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l 126 (426)
...++.++.+++.|++.+=+--+. .+..+..+.++++++||++++-+
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iTDh~-----------------~~~~~~~~~~~~~~~gi~~i~G~ 61 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAITDHG-----------------NLFGAVEFYKAAKKAGIKPIIGL 61 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEeeCC-----------------cccCHHHHHHHHHHcCCeEEEEE
Confidence 357789999999999988772111 12223466778889999998643
No 202
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=41.84 E-value=62 Score=32.04 Aligned_cols=46 Identities=20% Similarity=0.140 Sum_probs=36.0
Q ss_pred HHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014373 66 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 66 ~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
.++++.+.+.|+..||+..+.. + .+.+.+.++.|++.|+.+.+.+.
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~--------------e--~~~~~~~i~~ak~~G~~v~~~l~ 136 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCT--------------E--ADVSEQHIGLARELGMDTVGFLM 136 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecc--------------h--HHHHHHHHHHHHHCCCeEEEEEE
Confidence 4789999999999999954321 1 23467899999999999998874
No 203
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=41.79 E-value=38 Score=31.80 Aligned_cols=63 Identities=14% Similarity=0.202 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEE
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLIL 124 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil 124 (426)
.+.+.+.++.+.++|+..|=+++|+...|.+-+.+-..+=.-..+.++..++.+.++||+|-+
T Consensus 38 ~~~l~~i~~~c~~lgI~~vTvYaFS~eN~~R~~~EV~~Lm~L~~~~l~~~~~~~~~~~irv~~ 100 (241)
T PRK14842 38 ANAIDRLMDASLEYGLKNISLYAFSTENWKRPITEIRSIFGLLVEFIETRLDTIHARGIRIHH 100 (241)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 367889999999999999999999865553211110000011233455556677889999965
No 204
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=41.22 E-value=42 Score=33.59 Aligned_cols=62 Identities=15% Similarity=0.116 Sum_probs=43.2
Q ss_pred HHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC
Q 014373 65 VSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN 128 (426)
Q Consensus 65 ~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~ 128 (426)
..++++.+.+.|+..||++..... . ..+..-+.-.++.++.+...++.|+++|++|.+++.+
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd-~-~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~ed 134 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSP-I-HLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAED 134 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCH-H-HHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 367889999999999999653211 0 0111112224677899999999999999999888643
No 205
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=41.21 E-value=3.1e+02 Score=25.75 Aligned_cols=49 Identities=12% Similarity=0.064 Sum_probs=34.2
Q ss_pred HHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014373 69 FHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 69 l~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
...++++|++.+=+- +++. +..|+|. -+.+..-+..|.++||.+|+|+-
T Consensus 77 ~~mL~d~G~~~viiG-HSER--------R~~f~Et-~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 77 AEMLKDAGAKYVIIG-HSER--------RQYFGET-DEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred HHHHHHcCCCEEEeC-cccc--------cCcCCCC-cHHHHHHHHHHHHCCCEEEEEeC
Confidence 457889999999883 3331 1112222 45667788899999999999984
No 206
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=41.21 E-value=37 Score=33.96 Aligned_cols=60 Identities=10% Similarity=0.028 Sum_probs=42.0
Q ss_pred HHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014373 66 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 66 ~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
.++++.+.+.|+..||++..... .. ++..-+.-.++.++.+...++.|+++|+.|.+.+.
T Consensus 75 ~~di~~a~~~g~~~i~i~~~~Sd-~~-~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~e 134 (365)
T TIGR02660 75 DADIEAAARCGVDAVHISIPVSD-LQ-IEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGE 134 (365)
T ss_pred HHHHHHHHcCCcCEEEEEEccCH-HH-HHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeec
Confidence 57888999999999999653211 00 01111222467889999999999999999887764
No 207
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=41.18 E-value=68 Score=30.21 Aligned_cols=69 Identities=16% Similarity=0.171 Sum_probs=42.1
Q ss_pred CCeEEEEEEeeccchhhhccCCCChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHH
Q 014373 38 NDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKK 117 (426)
Q Consensus 38 ~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~ 117 (426)
.|-.+++-|+=.... .. +..+++.|+.++++|+++|=| +++. + .++ .+..-++|..|++
T Consensus 66 ~gV~v~~GGtl~E~a-~~------q~~~~~yl~~~k~lGf~~IEi---SdGt---i-----~l~---~~~r~~~I~~~~~ 124 (244)
T PF02679_consen 66 HGVYVYPGGTLFEVA-YQ------QGKFDEYLEECKELGFDAIEI---SDGT---I-----DLP---EEERLRLIRKAKE 124 (244)
T ss_dssp TT-EEEE-HHHHHHH-HH------TT-HHHHHHHHHHCT-SEEEE-----SS---S-----------HHHHHHHHHHHCC
T ss_pred cCCeEeCCcHHHHHH-Hh------cChHHHHHHHHHHcCCCEEEe---cCCc---e-----eCC---HHHHHHHHHHHHH
Confidence 456666666543211 11 358899999999999999998 3331 1 112 2233478999999
Q ss_pred cCCEEEEecC
Q 014373 118 YKIRLILSLT 127 (426)
Q Consensus 118 ~Gi~vil~l~ 127 (426)
+|++|+..+.
T Consensus 125 ~Gf~v~~EvG 134 (244)
T PF02679_consen 125 EGFKVLSEVG 134 (244)
T ss_dssp TTSEEEEEES
T ss_pred CCCEEeeccc
Confidence 9999999873
No 208
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=41.08 E-value=69 Score=31.64 Aligned_cols=46 Identities=17% Similarity=0.088 Sum_probs=35.7
Q ss_pred HHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014373 66 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 66 ~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
.++++.+.+.|+..||+..+.. + .+...+.++.|++.|+.+.+.+.
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~--------------e--~d~~~~~i~~ak~~G~~v~~~l~ 135 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCT--------------E--ADVSEQHIGMARELGMDTVGFLM 135 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccc--------------h--HHHHHHHHHHHHHcCCeEEEEEE
Confidence 4789999999999999954321 1 23456899999999999988774
No 209
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=41.01 E-value=38 Score=32.53 Aligned_cols=61 Identities=21% Similarity=0.090 Sum_probs=43.8
Q ss_pred HHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC
Q 014373 66 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN 128 (426)
Q Consensus 66 ~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~ 128 (426)
+++++.+.+.|++.|++...... .. .+..-+.--++.++.+..++..|+++|++|.+.+.+
T Consensus 77 ~~~~~~A~~~g~~~i~i~~~~S~-~h-~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d 137 (280)
T cd07945 77 DKSVDWIKSAGAKVLNLLTKGSL-KH-CTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLED 137 (280)
T ss_pred HHHHHHHHHCCCCEEEEEEeCCH-HH-HHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEe
Confidence 46899999999999999652111 10 111112234788999999999999999999998854
No 210
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=40.67 E-value=3.3e+02 Score=26.81 Aligned_cols=107 Identities=15% Similarity=0.261 Sum_probs=64.1
Q ss_pred HHHHHHHHHcCC--EEEEecCCCcCCCCChhhHHH-----hhhhcC-CCCCCCCCcCCCHHHHHHHHHHHHHHHhccccc
Q 014373 109 DFVISEAKKYKI--RLILSLTNNWDAYGGKAQYVK-----WGKAAG-LNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTF 180 (426)
Q Consensus 109 D~~l~~a~~~Gi--~vil~l~~~w~~~gg~~~y~~-----W~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~ 180 (426)
..+++.+++.|+ -|++.|.-++..+ ....|.+ +....+ .++..-..|+++|..++++.+.++.-++.
T Consensus 105 ~~~v~~l~~~gv~~iv~~pLyPqyS~s-Tt~s~~~~~~~al~~~~~~~~i~~I~~~~~~p~yI~a~a~~I~~~~~~---- 179 (320)
T COG0276 105 EEAVEELKKDGVERIVVLPLYPQYSSS-TTGSYVDELARALKELRGQPKISTIPDYYDEPLYIEALADSIREKLAK---- 179 (320)
T ss_pred HHHHHHHHHcCCCeEEEEECCcccccc-cHHHHHHHHHHHHHhcCCCCceEEecCccCChHHHHHHHHHHHHHHHh----
Confidence 478889999999 4555554333221 1112222 111112 22333457999999999999998887776
Q ss_pred ccccccCCCcEEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhc
Q 014373 181 TNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSI 225 (426)
Q Consensus 181 tg~~y~~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~ 225 (426)
..-++.++.+.---=|...... |+.+..++++.+..|++.
T Consensus 180 ----~~~~~~~llfSaHglP~~~~~~-GDpY~~q~~~t~~li~e~ 219 (320)
T COG0276 180 ----HPRDDDVLLFSAHGLPKRYIDE-GDPYPQQCQETTRLIAEA 219 (320)
T ss_pred ----cCCCCeEEEEecCCCchhhhhc-CCchHHHHHHHHHHHHHH
Confidence 4334455555544444433322 567888999999999863
No 211
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=40.64 E-value=49 Score=32.35 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=43.4
Q ss_pred HHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC
Q 014373 69 FHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN 128 (426)
Q Consensus 69 l~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~ 128 (426)
.+.++++|.+.+-+.+..+. ..+-.+|+.....+.++.++|++.+|-.++.+..
T Consensus 111 ~~rike~GadavK~Llyy~p------D~~~~in~~k~a~vervg~eC~a~dipf~lE~lt 164 (324)
T PRK12399 111 AKRIKEEGADAVKFLLYYDV------DEPDEINEQKKAYIERIGSECVAEDIPFFLEILT 164 (324)
T ss_pred HHHHHHhCCCeEEEEEEECC------CCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEee
Confidence 56789999999999765321 2234567888999999999999999999999754
No 212
>COG3525 Chb N-acetyl-beta-hexosaminidase [Carbohydrate transport and metabolism]
Probab=40.37 E-value=98 Score=33.34 Aligned_cols=63 Identities=19% Similarity=0.306 Sum_probs=45.1
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCCcc-------c-------------ccC------C--CCCCChHHHHHHHHHH
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQWR-------A-------------LQT------S--PSVYDEEVFKALDFVI 112 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~-------~-------------~~~------~--~g~~~e~~l~~lD~~l 112 (426)
+.+++.+.++.|+..++|++-++.-.+..|. - ..| + .|-|+++ .+..++
T Consensus 276 s~~~vk~~Id~laa~Kln~~hlHLtddegwrleIk~~PkLT~iga~R~~de~~~Pq~g~~pe~~ggfytqd---~~relv 352 (732)
T COG3525 276 STDDVKRLIDQLAAHKLNVLHLHLTDDEGWRLEIKRYPKLTTIGAWRIPDEPDLPQLGYGPERMGGFYTQD---DIRELV 352 (732)
T ss_pred CHHHHHHHHHHHHHhhcceEEEeeccCcceeeccccCCccccccccccCCCcCCcccccCcccccCcccHH---HHHHHH
Confidence 5688999999999999999998654443331 0 001 1 1345644 456789
Q ss_pred HHHHHcCCEEEEec
Q 014373 113 SEAKKYKIRLILSL 126 (426)
Q Consensus 113 ~~a~~~Gi~vil~l 126 (426)
+-|.+++|.||..+
T Consensus 353 ~yAsar~ItviPei 366 (732)
T COG3525 353 AYASARQITVIPEI 366 (732)
T ss_pred HHHhhcCceecCCc
Confidence 99999999999887
No 213
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=40.09 E-value=43 Score=33.31 Aligned_cols=60 Identities=20% Similarity=0.026 Sum_probs=43.1
Q ss_pred HHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014373 65 VSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSL 126 (426)
Q Consensus 65 ~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l 126 (426)
..+|++.+.+.|+..|.+++-... .. .+..-+.--++.++.+.++++.|+++|++|...+
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd-~h-~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~i 182 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASE-SF-SKSNINCSIEESLVRYREVALAAKKHSIPVRGYV 182 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCH-HH-HHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 568889999999999998652211 00 1111223347889999999999999999997665
No 214
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=40.01 E-value=88 Score=32.36 Aligned_cols=66 Identities=11% Similarity=0.099 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccc---cC---CCCCCChHH---HHHHHHHHHHHHHcCCEEEEecC
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRAL---QT---SPSVYDEEV---FKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~---~~---~~g~~~e~~---l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
-..+.+.|+.|+..-+|++..++..+...|.- .| ..|.|+... -+..-.+|+-|+-+||+|+..+.
T Consensus 197 v~~IkrtLeaMa~nKLNVlHWHivDs~SFPle~~~~PeL~~kGaYs~~~vYT~eDv~evV~yarlRGIRVlpEfD 271 (542)
T KOG2499|consen 197 VKVIKRTLEAMAANKLNVLHWHIVDSQSFPLESPTFPELHRKGAYSPRHVYTREDVSEVVEYARLRGIRVLPEFD 271 (542)
T ss_pred HHHHHHHHHHHHhhhhceeEEEeecCCCCccccCCchhhhhcCCCCcceeecHHHHHHHHHHHHhccceeeeccc
Confidence 46889999999999999999866433222210 01 124443221 34556899999999999999873
No 215
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=39.78 E-value=42 Score=31.40 Aligned_cols=64 Identities=8% Similarity=0.212 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEe
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILS 125 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~ 125 (426)
.+.+.+.++.+.++|+..|=+++|+...|.+-+.+-..+=.-.-+.|++.++.+.++||+|-+.
T Consensus 33 ~~~l~~i~~~~~~lgIk~lTvYaFS~eN~~R~~~Ev~~Lm~L~~~~l~~~~~~~~~~~irvr~i 96 (233)
T PRK14841 33 AEVLHNTVKWSLELGIKYLTAFSFSTENWKRPKEEVEFLMDLFVQMIDREMELLRRERVRVRIL 96 (233)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 3678899999999999999999998655532111100000112234455566778899988664
No 216
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=39.29 E-value=3.1e+02 Score=25.30 Aligned_cols=56 Identities=4% Similarity=0.020 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 014373 160 TTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAK 228 (426)
Q Consensus 160 ~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~ 228 (426)
++..+.+.+.++.++.. -++..-.++.|..|=+.... .+..=..++...|+++++.
T Consensus 115 ~~~~~~~~~~l~~l~~~--------A~~~gi~l~lE~~~~~~~~~-----~~l~t~~~~~~li~~v~~~ 170 (254)
T TIGR03234 115 EEARATLVENLRYAADA--------LDRIGLTLLIEPINSFDMPG-----FFLTTTEQALAVIDDVGRE 170 (254)
T ss_pred HHHHHHHHHHHHHHHHH--------HHhcCCEEEEEECCcccCCC-----ChhcCHHHHHHHHHHhCCC
Confidence 44556666777777765 44445567777655332211 0111235667777777643
No 217
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=38.59 E-value=82 Score=34.42 Aligned_cols=69 Identities=17% Similarity=0.230 Sum_probs=46.3
Q ss_pred ChHHHHHHHHHHHHCCCCEEEec-ccc--CCCcccc-cCCCCCCChH--HHHHHHHHHHHHHHcCCEEEEecCCC
Q 014373 61 TRGKVSELFHQASSAGLTVCRTW-AFN--DGQWRAL-QTSPSVYDEE--VFKALDFVISEAKKYKIRLILSLTNN 129 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~-~~~--~~~~~~~-~~~~g~~~e~--~l~~lD~~l~~a~~~Gi~vil~l~~~ 129 (426)
+-.+.+..+..++++|+.++=+. +|. .+.-+.+ -..|.++|++ +.+.|.+++++++++||-+|+++.-+
T Consensus 17 tF~~A~~~l~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DIVPN 91 (889)
T COG3280 17 TFADARALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDIVPN 91 (889)
T ss_pred CHHHHHHhhHHHHhcCchheeccchhhcCCCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEeccc
Confidence 35688899999999999987662 221 1110000 1123345554 47788899999999999999997533
No 218
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=38.23 E-value=3.7e+02 Score=25.80 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHcCCEEEEec
Q 014373 106 KALDFVISEAKKYKIRLILSL 126 (426)
Q Consensus 106 ~~lD~~l~~a~~~Gi~vil~l 126 (426)
..|-.-|..|++.|+||+|.|
T Consensus 59 ~~~~~dI~~cq~~G~KVlLSI 79 (280)
T cd02877 59 PQLGADIKHCQSKGKKVLLSI 79 (280)
T ss_pred hhHHHHHHHHHHCCCEEEEEc
Confidence 466788899999999999998
No 219
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=37.71 E-value=47 Score=31.37 Aligned_cols=64 Identities=13% Similarity=0.203 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEe
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILS 125 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~ 125 (426)
.+.+.+.+..+.++|+..|=+++|+...|.+-+.+-..+-.-.-+.|++.++.+.++||++-+.
T Consensus 50 ~~~l~~i~~~c~~~GI~~vT~yaFS~eN~kR~~~Ev~~Lm~L~~~~l~~~~~~~~~~~iri~~i 113 (249)
T PRK14831 50 VDALKDLLRCCKDWGIGALTAYAFSTENWSRPLEEVNFLMTLFERVLRRELEELMEENVRIRFV 113 (249)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeecchhhhCcCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEE
Confidence 3678899999999999999999998544532111100000011233445566788999988664
No 220
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=37.48 E-value=63 Score=29.86 Aligned_cols=65 Identities=12% Similarity=0.208 Sum_probs=45.4
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
....++.-++.+++.|+..+|++..... . ..+..-+.-.++.++.+..++..|+++|+.+.+.+.
T Consensus 65 ~~~~i~~~~~~~~~~g~~~i~i~~~~s~-~-~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~ 129 (237)
T PF00682_consen 65 NEEDIERAVEAAKEAGIDIIRIFISVSD-L-HIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCE 129 (237)
T ss_dssp CHHHHHHHHHHHHHTTSSEEEEEEETSH-H-HHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEET
T ss_pred hHHHHHHHHHhhHhccCCEEEecCcccH-H-HHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCcc
Confidence 3567777788889999999999653211 0 001111222367899999999999999999977764
No 221
>PLN02429 triosephosphate isomerase
Probab=37.30 E-value=1.6e+02 Score=28.84 Aligned_cols=19 Identities=21% Similarity=0.200 Sum_probs=15.2
Q ss_pred HHHHHH----HHHcCCEEEEecC
Q 014373 109 DFVISE----AKKYKIRLILSLT 127 (426)
Q Consensus 109 D~~l~~----a~~~Gi~vil~l~ 127 (426)
|..|.. |.++||.+|+|+-
T Consensus 166 d~~V~~Kv~~al~~GL~pIvCIG 188 (315)
T PLN02429 166 DEFIGKKAAYALSEGLGVIACIG 188 (315)
T ss_pred HHHHHHHHHHHHHCcCEEEEEcC
Confidence 445555 9999999999984
No 222
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=37.13 E-value=1e+02 Score=31.00 Aligned_cols=71 Identities=15% Similarity=0.123 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHC-CCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhHH
Q 014373 62 RGKVSELFHQASSA-GLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYV 140 (426)
Q Consensus 62 ~~~~~~dl~~~~~~-G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~ 140 (426)
...|+-||+.+.++ -=|++=+.+.+. -.|--++|+++.| .++++.|+|+||.||-+=...|..+|+.+.++
T Consensus 182 e~~weIDL~~veal~DENT~AivviNP-----~NPcGnVys~~HL---~kiae~A~klgi~vIaDEVY~~~vfg~~pfvp 253 (447)
T KOG0259|consen 182 EKDWEIDLDGVEALADENTVAIVVINP-----NNPCGNVYSEDHL---KKIAETAKKLGIMVIADEVYGHTVFGDKPFVP 253 (447)
T ss_pred cccceechHHHHHhhccCeeEEEEeCC-----CCCCcccccHHHH---HHHHHHHHHhCCeEEehhhcceeecCCCCccc
Confidence 35666677666643 456666654321 1233357887665 57889999999999999766666667665433
No 223
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=36.87 E-value=86 Score=29.67 Aligned_cols=46 Identities=17% Similarity=0.154 Sum_probs=35.5
Q ss_pred HHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014373 66 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 66 ~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
.++++.+.+.|++.||+..... -...+..+++.|+++|+.+.+++.
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s----------------~~~~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCT----------------EADVSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechh----------------hHHHHHHHHHHHHHCCCeEEEEEE
Confidence 4778999999999999954211 123567799999999999988873
No 224
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=36.83 E-value=52 Score=30.84 Aligned_cols=64 Identities=14% Similarity=0.191 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEe
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILS 125 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~ 125 (426)
...+.+.++.+.++|+..|=+++|+...|.+-+.+-..+=.-.-..|+..++.+.++||+|-+.
T Consensus 39 ~~~l~~i~~~c~~~GI~~lTvYaFS~EN~~R~~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~i 102 (239)
T PRK14839 39 VEAIRRVVEAAPDLGIGTLTLYAFSSDNWRRPAAEVGGLMRLLRAYLRNETERLARNGVRLTVI 102 (239)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEechhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 3678899999999999999999998655532111100000011234445566788899998553
No 225
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=36.79 E-value=95 Score=33.26 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSL 126 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l 126 (426)
.+.++.+++.+.+.|+..+|++.... + .+.+...++.|+++|+.+..++
T Consensus 90 ddvv~~~v~~a~~~Gvd~irif~~ln--------------d--~~n~~~~i~~ak~~G~~v~~~i 138 (582)
T TIGR01108 90 DDVVERFVKKAVENGMDVFRIFDALN--------------D--PRNLQAAIQAAKKHGAHAQGTI 138 (582)
T ss_pred hhhHHHHHHHHHHCCCCEEEEEEecC--------------c--HHHHHHHHHHHHHcCCEEEEEE
Confidence 45688899999999999999964311 1 2567788899999999888765
No 226
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=36.71 E-value=57 Score=31.16 Aligned_cols=58 Identities=12% Similarity=0.040 Sum_probs=40.9
Q ss_pred HHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014373 67 ELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSL 126 (426)
Q Consensus 67 ~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l 126 (426)
.+++.+.+.|++.||+..-... .. .+...+.-.++.++.+..+++.|+++|+.|.++.
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd-~~-~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~ 139 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWD-LH-VTEALGTTLEENLAMIRDSVAYLKSHGREVIFDA 139 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCH-HH-HHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeE
Confidence 6788899999999999532110 10 1122233346789999999999999999998864
No 227
>PRK01060 endonuclease IV; Provisional
Probab=36.69 E-value=2.5e+02 Score=26.46 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEE
Q 014373 64 KVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRL 122 (426)
Q Consensus 64 ~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~v 122 (426)
.+++.++.++++|++.|=++......| .++.++++.+ +.+-++++++||.+
T Consensus 13 ~~~~~l~~~~~~G~d~vEl~~~~p~~~-----~~~~~~~~~~---~~lk~~~~~~gl~~ 63 (281)
T PRK01060 13 GLEGAVAEAAEIGANAFMIFTGNPQQW-----KRKPLEELNI---EAFKAACEKYGISP 63 (281)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCCCCC-----cCCCCCHHHH---HHHHHHHHHcCCCC
Confidence 488999999999999999976422111 1233454444 45557788999985
No 228
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=36.13 E-value=2.1e+02 Score=27.63 Aligned_cols=63 Identities=10% Similarity=0.239 Sum_probs=43.3
Q ss_pred cCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCEEEec
Q 014373 156 FFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIG 234 (426)
Q Consensus 156 ~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~g 234 (426)
+..+++.++.+.+-+..++++ |+=+.-.+-||-.+ . ...+.+..+++++.+.+++. +.++++.
T Consensus 82 ~l~~~~~R~~fi~~iv~~~~~--------~~~dGidiD~E~~~---~---~d~~~~~~fl~eL~~~l~~~--~~~lsv~ 144 (298)
T cd06549 82 LLADPSARAKFIANIAAYLER--------NQADGIVLDFEELP---A---DDLPKYVAFLSELRRRLPAQ--GKQLTVT 144 (298)
T ss_pred HhcCHHHHHHHHHHHHHHHHH--------hCCCCEEEecCCCC---h---hHHHHHHHHHHHHHHHhhhc--CcEEEEE
Confidence 467899999998888888888 65454455566321 1 12467888999999988875 3455543
No 229
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=35.96 E-value=54 Score=31.00 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEe
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILS 125 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~ 125 (426)
.+.+++.++.+.++|+..|=+++|+...|.+-+.+-..+=.-.-+.|+..++...++||+|-+.
T Consensus 52 ~~~l~~v~~~c~~~GIk~lTvYaFS~EN~~R~~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~i 115 (250)
T PRK14840 52 AKSLPQIVDTALHLGIEVLTLFAFSTENFSRSKEEVAELFSLFNSQLDSQLPYLHENEIRLRCI 115 (250)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 3678899999999999999999998655532111100000112345566677788899998664
No 230
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=35.84 E-value=56 Score=30.38 Aligned_cols=64 Identities=17% Similarity=0.335 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEe
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILS 125 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~ 125 (426)
.+.+++.++.+.++|+..|=+++|+...|.+-+.+-..+=.=..+.|++.++...++||+|-+-
T Consensus 29 ~~~~~~v~~~c~~~GI~~lT~yaFStEN~~Rp~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~i 92 (226)
T TIGR00055 29 VKSLRRILRWCANLGVECLTLYAFSTENWKRPKEEVDFLMELFEKKLDREVKELHRYNVRIRII 92 (226)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeehhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 3678899999999999999999998655642111100000011223444555677899998663
No 231
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=35.78 E-value=89 Score=33.54 Aligned_cols=49 Identities=16% Similarity=0.317 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSL 126 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l 126 (426)
.+.++.+++.+++.|++.+|++.... + ++.+...++.|+++|+.+..++
T Consensus 95 d~vv~~~v~~A~~~Gvd~irif~~ln--------------d--~~n~~~~i~~ak~~G~~v~~~i 143 (592)
T PRK09282 95 DDVVEKFVEKAAENGIDIFRIFDALN--------------D--VRNMEVAIKAAKKAGAHVQGTI 143 (592)
T ss_pred chhhHHHHHHHHHCCCCEEEEEEecC--------------h--HHHHHHHHHHHHHcCCEEEEEE
Confidence 45788999999999999999964311 1 4677888999999999998776
No 232
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=35.77 E-value=61 Score=32.62 Aligned_cols=60 Identities=12% Similarity=0.113 Sum_probs=42.6
Q ss_pred HHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014373 66 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 66 ~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
.++++.+.+.|+..||++..... . -++..-+.--++.++.+...++.|++.|+.|.+++.
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd-~-h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~e 137 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSD-I-HIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAE 137 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCH-H-HHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 67888899999999999643211 0 011111223478899999999999999999988753
No 233
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]
Probab=35.71 E-value=91 Score=32.87 Aligned_cols=75 Identities=19% Similarity=0.310 Sum_probs=44.2
Q ss_pred EEEEeeccchhhhccCCCChHHHHHHHHHHHHCCCCEEEeccccCCCccccc----CCCC--CCChHHHH-HHHHHHHHH
Q 014373 43 YVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQ----TSPS--VYDEEVFK-ALDFVISEA 115 (426)
Q Consensus 43 ~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~----~~~g--~~~e~~l~-~lD~~l~~a 115 (426)
.+.|.|.|+.-++. .+++.+.+-++.+|+.|+-.+ +..|+ |-.-. ..-| ..+.+-|- .+..+++..
T Consensus 292 rPi~~nsWea~Yfd---~t~e~ile~vk~akk~gvE~F---vlDDG-wfg~rndd~~slGDWlv~seKfPsgiE~li~~I 364 (687)
T COG3345 292 RPIGWNSWEAYYFD---FTEEEILENVKEAKKFGVELF---VLDDG-WFGGRNDDLKSLGDWLVNSEKFPSGIEELIEAI 364 (687)
T ss_pred Ccceeeceeeeeec---CCHHHHHHHHHHHhhcCeEEE---EEccc-cccccCcchhhhhceecchhhccccHHHHHHHH
Confidence 34556655443332 257888999999999996543 33443 42000 1112 23444343 478899999
Q ss_pred HHcCCEEEE
Q 014373 116 KKYKIRLIL 124 (426)
Q Consensus 116 ~~~Gi~vil 124 (426)
+++|+..-|
T Consensus 365 ~e~Gl~fGI 373 (687)
T COG3345 365 AENGLIFGI 373 (687)
T ss_pred HHcCCccce
Confidence 999997744
No 234
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=35.70 E-value=66 Score=31.56 Aligned_cols=57 Identities=14% Similarity=0.121 Sum_probs=44.6
Q ss_pred HHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCC
Q 014373 67 ELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNN 129 (426)
Q Consensus 67 ~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~ 129 (426)
-..+.++++|.+.+-+.+..+. ..+-.+|+.....+.++.++|++.+|-.++.+..+
T Consensus 111 ws~~rike~GadavK~Llyy~p------D~~~ein~~k~a~vervg~eC~a~dipf~lE~l~Y 167 (329)
T PRK04161 111 WSVKRLKEAGADAVKFLLYYDV------DGDEEINDQKQAYIERIGSECTAEDIPFFLELLTY 167 (329)
T ss_pred hhHHHHHHhCCCeEEEEEEECC------CCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEecc
Confidence 3567789999999999765321 12334677889999999999999999999998643
No 235
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=35.59 E-value=3.1e+02 Score=30.54 Aligned_cols=154 Identities=14% Similarity=0.224 Sum_probs=82.5
Q ss_pred ChHHHHHHHHHHHHCCCC--EEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhh
Q 014373 61 TRGKVSELFHQASSAGLT--VCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQ 138 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N--~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~ 138 (426)
+++.+.+-++.+++..+- ++++=. + -|.. .-..-.+|+..|-..+.+++..++.||++++-+.-.-..-. +.
T Consensus 278 ~e~~v~~~i~~~~~~~IP~d~~~lD~--~-~~~~-~~~~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~--~~ 351 (772)
T COG1501 278 DEDEVLEFIDEMRERDIPLDVFVLDI--D-FWMD-NWGDFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDS--PL 351 (772)
T ss_pred cHHHHHHHHhhcccccCcceEEEEee--h-hhhc-cccceEECcccCCCHHHHHHHHHhcCceEEEEeccccccCC--ch
Confidence 356677777777766554 444411 0 0211 11123456666777789999999999999988632110000 11
Q ss_pred HHHhhhhcCCCC----------------CCCCCcCCCHHHHHHHHH-HHHHHHhcccccccccccCCCcEEEEEeccCCC
Q 014373 139 YVKWGKAAGLNL----------------TSDDEFFSHTTLKSYYKA-HVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPR 201 (426)
Q Consensus 139 y~~W~~~~g~~~----------------~~~~~~~~~~~~~~~~~~-~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~ 201 (426)
|.. ....|.-+ ..-.+ |++|++++.+.+ ..+.++.- .-..-|.=+|||.
T Consensus 352 ~~e-~~~~Gy~~k~~~g~~~~~~~w~~~~a~~D-Ftnp~~r~Ww~~~~~~~l~d~------------Gv~g~W~D~nEp~ 417 (772)
T COG1501 352 FKE-AIEKGYFVKDPDGEIYQADFWPGNSAFPD-FTNPDAREWWASDKKKNLLDL------------GVDGFWNDMNEPE 417 (772)
T ss_pred HHH-HHHCCeEEECCCCCEeeecccCCcccccC-CCCHHHHHHHHHHHHhHHHhc------------CccEEEccCCCCc
Confidence 111 00111100 00112 678999999985 33444442 2233477799998
Q ss_pred CCCCC------ChhHH-----HHHHHHHHHHHHhcCCC-CEEEec
Q 014373 202 CTSDP------SGDTL-----QSWIQEMAVYVKSIDAK-HLVEIG 234 (426)
Q Consensus 202 ~~~~~------~~~~~-----~~w~~~~~~~Ir~~dp~-~lV~~g 234 (426)
..... ++..+ .-+.+...+.+|+..|+ +++++.
T Consensus 418 ~~~~~~~~~g~~~~~~~N~yp~~~~~a~~~~~~~~~~~~r~~~ls 462 (772)
T COG1501 418 PFDGDGFGNGIDHEEMHNLYPLLYAKAVYEALKELGGNERPFILS 462 (772)
T ss_pred cccccccccccCHHHHhcchhHHHHHHHHHHHHhhcCCCceEEEE
Confidence 76321 11112 23456677889999775 455554
No 236
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=35.45 E-value=2.9e+02 Score=25.86 Aligned_cols=53 Identities=17% Similarity=0.203 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEE
Q 014373 64 KVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLIL 124 (426)
Q Consensus 64 ~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil 124 (426)
-++..|+.++++|++.|-+|......| .+..+++. .++.+-+.++++||.+.+
T Consensus 11 ~~~~~~~~~~~~G~~~vel~~~~~~~~-----~~~~~~~~---~~~~l~~~~~~~gl~ls~ 63 (273)
T smart00518 11 GLYKAFIEAVDIGARSFQLFLGNPRSW-----KGVRLSEE---TAEKFKEALKENNIDVSV 63 (273)
T ss_pred cHhHHHHHHHHcCCCEEEEECCCCCCC-----CCCCCCHH---HHHHHHHHHHHcCCCEEE
Confidence 466899999999999999976432111 01123433 456677788899998654
No 237
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=35.41 E-value=3.8e+02 Score=25.11 Aligned_cols=104 Identities=12% Similarity=0.098 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhHHH
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVK 141 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~ 141 (426)
....++.-+.+++.|+.+.=+..-....++...+.+ ..-++.++.+.++++.|++.|.+.|... . + ..
T Consensus 51 ~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~-~~r~~~~~~~~~~i~~a~~lG~~~v~~~-~------~-~~--- 118 (284)
T PRK13210 51 KEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDP-ATRERALEIMKKAIRLAQDLGIRTIQLA-G------Y-DV--- 118 (284)
T ss_pred HHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCH-HHHHHHHHHHHHHHHHHHHhCCCEEEEC-C------c-cc---
Confidence 456677777888999987655211000011000111 1124578899999999999999998641 1 0 00
Q ss_pred hhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEec
Q 014373 142 WGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELM 197 (426)
Q Consensus 142 W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~ 197 (426)
+. . ..+++..+.+.+.++.+++. -+...-.+++|..
T Consensus 119 ~~---~---------~~~~~~~~~~~~~l~~l~~~--------a~~~gv~l~lE~~ 154 (284)
T PRK13210 119 YY---E---------EKSEETRQRFIEGLAWAVEQ--------AAAAQVMLAVEIM 154 (284)
T ss_pred cc---c---------cccHHHHHHHHHHHHHHHHH--------HHHhCCEEEEEec
Confidence 00 0 11245566667777777776 5555555666554
No 238
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=35.35 E-value=57 Score=30.44 Aligned_cols=64 Identities=16% Similarity=0.222 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEe
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILS 125 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~ 125 (426)
-+.+++.++.+.++|+..|=+++|+...|.+-+.+-..+=+-.-..|.+.+....++||+|-+.
T Consensus 36 ~~~~~~i~~~c~~~GI~~lT~YaFS~EN~~Rp~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~i 99 (230)
T PRK14837 36 LKRAKEIVKHSLKLGIKYLSLYVFSTENWNRTDSEIEHLMFLIADYLSSEFNFYKKNNIKIIVS 99 (230)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEE
Confidence 3678899999999999999999998655632111100000011123344455677899998663
No 239
>PRK09989 hypothetical protein; Provisional
Probab=35.24 E-value=3.7e+02 Score=24.96 Aligned_cols=90 Identities=6% Similarity=0.018 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhHHHhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccc
Q 014373 104 VFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNL 183 (426)
Q Consensus 104 ~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~ 183 (426)
..+.++++++.|++.|.+.|..... +.. ......+..+...+.++.+++.
T Consensus 83 ~~~~l~~~i~~A~~lg~~~v~v~~g-~~~----------------------~~~~~~~~~~~~~~~l~~l~~~------- 132 (258)
T PRK09989 83 ARADIDLALEYALALNCEQVHVMAG-VVP----------------------AGEDAERYRAVFIDNLRYAADR------- 132 (258)
T ss_pred HHHHHHHHHHHHHHhCcCEEEECcc-CCC----------------------CCCCHHHHHHHHHHHHHHHHHH-------
Confidence 3556777777777777765542211 100 0011234555667777777776
Q ss_pred cccCCCcEEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCC
Q 014373 184 TYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKH 229 (426)
Q Consensus 184 ~y~~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~ 229 (426)
.++....++.|-.|....... .+. =..++...|+++++..
T Consensus 133 -a~~~gv~l~lE~l~~~~~~~~----~~~-~~~~~~~ll~~v~~~~ 172 (258)
T PRK09989 133 -FAPHGKRILVEALSPGVKPHY----LFS-SQYQALAIVEEVARDN 172 (258)
T ss_pred -HHhcCCEEEEEeCCCCCCCCC----ccC-CHHHHHHHHHHcCCCC
Confidence 555566677777764321110 010 1245677788887544
No 240
>PLN02561 triosephosphate isomerase
Probab=35.16 E-value=4e+02 Score=25.25 Aligned_cols=49 Identities=8% Similarity=0.028 Sum_probs=33.4
Q ss_pred HHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014373 69 FHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 69 l~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
...++++|++.+=+- +++. +..|+|. =+.+.+-+..|.++||.+|+|+-
T Consensus 81 ~~mL~d~G~~~viiG-HSER--------R~~f~Et-d~~v~~Kv~~al~~gl~pIvCvG 129 (253)
T PLN02561 81 AEMLVNLGIPWVILG-HSER--------RALLGES-NEFVGDKVAYALSQGLKVIACVG 129 (253)
T ss_pred HHHHHHcCCCEEEEC-cccc--------cCccCCC-hHHHHHHHHHHHHCcCEEEEEcC
Confidence 356889999988873 3321 1223332 24556777889999999999984
No 241
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=34.78 E-value=71 Score=31.30 Aligned_cols=56 Identities=11% Similarity=0.068 Sum_probs=43.8
Q ss_pred HHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCC
Q 014373 68 LFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNN 129 (426)
Q Consensus 68 dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~ 129 (426)
..+.++++|.+.+-+.++.+. ..+-..|+.....+.++-++|++.+|-.++.+..+
T Consensus 111 s~~rike~GadavK~Llyy~p------D~~~ein~~k~a~vervg~ec~a~dipf~lE~ltY 166 (325)
T TIGR01232 111 SAKRLKEQGANAVKFLLYYDV------DDAEEINIQKKAYIERIGSECVAEDIPFFLEVLTY 166 (325)
T ss_pred cHHHHHHhCCCeEEEEEEeCC------CCChHHHHHHHHHHHHHHHHHHHCCCCeEEEEecc
Confidence 366789999999999765321 11234677889999999999999999999998543
No 242
>PRK10426 alpha-glucosidase; Provisional
Probab=34.46 E-value=6.3e+02 Score=27.40 Aligned_cols=154 Identities=14% Similarity=0.191 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccC-C-------CCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCC
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQT-S-------PSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAY 133 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~-~-------~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~ 133 (426)
.+.+.+.++.+++.|+.+==||+ + .|..... . ...+|++.+-....+++..++.|+++++.++-+-..
T Consensus 220 ~~~v~~v~~~~r~~~IP~d~i~l--d-dw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~- 295 (635)
T PRK10426 220 TEVVQKKLDTMRNAGVKVNGIWA--Q-DWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLAS- 295 (635)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEE--e-cccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCC-
Confidence 46788999999999988766654 1 2421110 0 114577778888999999999999999887543211
Q ss_pred CChhhHHHhhhhcCCCCC----------------CCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEE-Ee
Q 014373 134 GGKAQYVKWGKAAGLNLT----------------SDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAW-EL 196 (426)
Q Consensus 134 gg~~~y~~W~~~~g~~~~----------------~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~w-eL 196 (426)
+.+.|..-. ..|.-+. .-.+ |++|++++.+++.++..+.. . .|-+| .=
T Consensus 296 -~~~~y~e~~-~~gy~vk~~~g~~~~~~~~~~~~~~~D-ftnp~ar~Ww~~~~~~~~~~--------~----Gvdg~w~D 360 (635)
T PRK10426 296 -DGDLCEEAA-EKGYLAKDADGGDYLVEFGEFYAGVVD-LTNPEAYEWFKEVIKKNMIG--------L----GCSGWMAD 360 (635)
T ss_pred -CCHHHHHHH-HCCcEEECCCCCEEEeEecCCCceeec-CCCHHHHHHHHHHHHHHHhh--------c----CCCEEeee
Confidence 123333211 1111000 0112 67899999998887653333 2 24444 55
Q ss_pred ccCCCCCCC-----CChhH-----HHHHHHHHHHHHHhcCC-CCEEEec
Q 014373 197 MNEPRCTSD-----PSGDT-----LQSWIQEMAVYVKSIDA-KHLVEIG 234 (426)
Q Consensus 197 ~NEp~~~~~-----~~~~~-----~~~w~~~~~~~Ir~~dp-~~lV~~g 234 (426)
+||+-.... .++.. ..-|.+.....+++..+ .+++++.
T Consensus 361 ~~E~~p~d~~~~~g~~~~~~hN~Y~~l~~~~~~e~~~~~~~~~r~f~lt 409 (635)
T PRK10426 361 FGEYLPTDAYLHNGVSAEIMHNAWPALWAKCNYEALEETGKLGEILFFM 409 (635)
T ss_pred CCCCCCCcceeeCCCCHHHhccHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 889533211 01111 22355556667777766 3444443
No 243
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=34.32 E-value=4.5e+02 Score=25.59 Aligned_cols=123 Identities=14% Similarity=0.179 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCccccc---CCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhh
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQ---TSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQ 138 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~---~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~ 138 (426)
.+.+.+.++.+++.|+.+==||+ +..|.... ...-.+|++.+-....+++..++.|+++++.++..-.. ..+.
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~l--d~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~--~~~~ 103 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHL--SSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQ--DHPR 103 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEE--eccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCcccC--CCHH
Confidence 67899999999999998665543 11232110 01124667777788899999999999999977543211 1122
Q ss_pred HHHhhhhcCC---------CC--------CCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCC
Q 014373 139 YVKWGKAAGL---------NL--------TSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPR 201 (426)
Q Consensus 139 y~~W~~~~g~---------~~--------~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~ 201 (426)
|..-.. .|. +. ..-.+ |++|++++.+.+.+++.+.. .+ .-.-|.=+|||.
T Consensus 104 y~e~~~-~g~~v~~~~g~~~~~~~~w~g~~~~~D-ftnp~a~~ww~~~~~~~~~~--------~G---vdg~w~D~~E~~ 170 (317)
T cd06599 104 YKELKE-AGAFIKPPDGREPSIGQFWGGVGSFVD-FTNPEGREWWKEGVKEALLD--------LG---IDSTWNDNNEYE 170 (317)
T ss_pred HHHHHH-CCcEEEcCCCCCcceecccCCCeEeec-CCChHHHHHHHHHHHHHHhc--------CC---CcEEEecCCCCc
Confidence 222111 110 00 00112 57899999999888655443 22 112355589985
No 244
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=34.04 E-value=64 Score=30.09 Aligned_cols=64 Identities=20% Similarity=0.267 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEe
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILS 125 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~ 125 (426)
...+.+.++.+.++|+..|=+++|+...|.+-+.+-..+=.-.-..|+..+....++||+|-+.
T Consensus 23 ~~~l~~i~~~c~~~GI~~lT~yaFS~eN~~R~~~Ev~~Lm~l~~~~l~~~~~~~~~~~i~vr~i 86 (229)
T PRK10240 23 AKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRII 86 (229)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeehhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEE
Confidence 3578899999999999999999998655532111100000111223444555677889988664
No 245
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=33.32 E-value=1.1e+02 Score=30.82 Aligned_cols=65 Identities=15% Similarity=0.155 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHc--CCEEEEecC
Q 014373 63 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKY--KIRLILSLT 127 (426)
Q Consensus 63 ~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~--Gi~vil~l~ 127 (426)
+..++-++.++++|++.|-+|.-..+.-...+......-+...+.|..+.+.|+++ ||++.|...
T Consensus 115 ~~~kraId~A~eLGa~~v~v~~G~~g~~~~~~~d~~~a~~~~~e~L~~lae~A~~~G~GV~laLEp~ 181 (382)
T TIGR02631 115 RKVLRNMDLGAELGAETYVVWGGREGAEYDGAKDVRAALDRMREALNLLAAYAEDQGYGLRFALEPK 181 (382)
T ss_pred HHHHHHHHHHHHhCCCEEEEccCCCCCcCccccCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEccC
Confidence 34577788999999999998752111000000000001133556777778888886 588888754
No 246
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=33.27 E-value=1.2e+02 Score=28.39 Aligned_cols=63 Identities=8% Similarity=0.209 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN 128 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~ 128 (426)
.+.+++-+..+.++|+.+|.+-.+. . | +++..-.......+.|...+++|.++++.+-+.+.+
T Consensus 95 leiM~KaI~LA~dLGIRtIQLAGYD-V-Y--YE~~d~eT~~rFi~g~~~a~~lA~~aqV~lAvEiMD 157 (287)
T COG3623 95 LEIMEKAIQLAQDLGIRTIQLAGYD-V-Y--YEEADEETRQRFIEGLKWAVELAARAQVMLAVEIMD 157 (287)
T ss_pred HHHHHHHHHHHHHhCceeEeeccce-e-e--eccCCHHHHHHHHHHHHHHHHHHHhhccEEEeeecc
Confidence 3567888999999999999995432 1 1 233322223456778899999999999988777644
No 247
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=32.91 E-value=66 Score=29.82 Aligned_cols=64 Identities=16% Similarity=0.297 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEe
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILS 125 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~ 125 (426)
.+.+.+.+..+.++|+..|=+++|+...|.+-+.+-..+=.-.-..|++.++.+.++||+|-+.
T Consensus 30 ~~~~~~i~~~~~~~gI~~lTvyaFS~eN~~R~~~EV~~Lm~l~~~~l~~~~~~~~~~~i~vr~i 93 (221)
T cd00475 30 AEKLRDILRWCLELGVKEVTLYAFSTENWKRPKEEVDFLMELFRDVLRRILKELEKLGVRIRII 93 (221)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeechhhhCcCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEE
Confidence 3678899999999999999999998655532111000000112335555666678899988663
No 248
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=32.80 E-value=73 Score=30.49 Aligned_cols=61 Identities=15% Similarity=0.021 Sum_probs=43.0
Q ss_pred HHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC
Q 014373 66 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN 128 (426)
Q Consensus 66 ~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~ 128 (426)
.++++.+.+.|+..|+++..... .. .+..-+.--++.++.+...+..|+++|+.+.+.+..
T Consensus 76 ~~dv~~A~~~g~~~i~i~~~~Sd-~~-~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~ 136 (274)
T cd07938 76 LRGAERALAAGVDEVAVFVSASE-TF-SQKNINCSIAESLERFEPVAELAKAAGLRVRGYVST 136 (274)
T ss_pred HHHHHHHHHcCcCEEEEEEecCH-HH-HHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 46889999999999999653211 00 011112223678899999999999999999888753
No 249
>KOG2331 consensus Predicted glycosylhydrolase [General function prediction only]
Probab=32.73 E-value=1.4e+02 Score=30.37 Aligned_cols=89 Identities=15% Similarity=0.262 Sum_probs=62.3
Q ss_pred HHHHHcCCEEEEecCCCcCCCCChhhHHHhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEE
Q 014373 113 SEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIF 192 (426)
Q Consensus 113 ~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~ 192 (426)
..|.+||++|+=++...|.. |+. . + ..|..+.+..+.+.+.+.++++. ++=+
T Consensus 118 n~AHrHGV~vlGTFItEw~e-g~~-~-c-------------~~~La~~es~~~~~e~L~~l~~~--------fgFd---- 169 (526)
T KOG2331|consen 118 NTAHRHGVKVLGTFITEWDE-GKA-T-C-------------KEFLATEESVEMTVERLVELARF--------FGFD---- 169 (526)
T ss_pred chhhhcCceeeeeEEEEecc-chh-H-H-------------HHHHccchhHHHHHHHHHHHHHH--------hCCc----
Confidence 47999999999998877743 211 1 1 23455666788888888899888 7654
Q ss_pred EEEe--ccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCEEE
Q 014373 193 AWEL--MNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVE 232 (426)
Q Consensus 193 ~weL--~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~ 232 (426)
+|-+ .|-..... -..+..++..+.+..++.-|+-+|.
T Consensus 170 GWLiNiEn~i~~~~---i~~l~~F~~~Lt~~~~~~~p~~~Vi 208 (526)
T KOG2331|consen 170 GWLINIENKIDLAK---IPNLIQFVSHLTKVLHSSVPGGLVI 208 (526)
T ss_pred eEEEEeeeccChhh---CccHHHHHHHHHHHHhhcCCCceEE
Confidence 3543 44433321 2458889999999999999998884
No 250
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=32.69 E-value=60 Score=30.11 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHH----HHHcCCEEEEecC
Q 014373 64 KVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISE----AKKYKIRLILSLT 127 (426)
Q Consensus 64 ~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~----a~~~Gi~vil~l~ 127 (426)
+-.+|+..|+..|+..|=.-+|. | .|-..-+..++.+++++.. |.+.||++-+++-
T Consensus 12 r~~eDlekMa~sGI~~Vit~Ahd----P----~~~~~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavG 71 (254)
T COG1099 12 RGFEDLEKMALSGIREVITLAHD----P----YPMKTAEVYLDHFRRLLGVEPERAEKAGLKLKVAVG 71 (254)
T ss_pred ccHHHHHHHHHhChhhhhhcccC----C----CCcccHHHHHHHHHHHHccchhhHHhhCceeeEEec
Confidence 45689999999999988775552 2 2333446667788888765 9999999999873
No 251
>PRK05434 phosphoglyceromutase; Provisional
Probab=31.99 E-value=1.7e+02 Score=30.79 Aligned_cols=58 Identities=19% Similarity=0.211 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
.+.+...++.+++.|++-|++++|.|+.- .. ...++.+|+++.+.+++.|.--|.++.
T Consensus 127 ~~hl~~l~~~a~~~g~~~v~vH~~~DGRD----~~----p~s~~~~i~~l~~~~~~~~~~~iasv~ 184 (507)
T PRK05434 127 IDHLFALLELAKEEGVKKVYVHAFLDGRD----TP----PKSALGYLEELEAKLAELGVGRIASVS 184 (507)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEecCCCC----CC----chhHHHHHHHHHHHHHHhCCeeEEEEe
Confidence 46788899999999999999999987631 11 245688888899999998986777764
No 252
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=31.95 E-value=5.4e+02 Score=25.87 Aligned_cols=46 Identities=13% Similarity=0.021 Sum_probs=28.7
Q ss_pred hhhhcCCCCcceEEEeccCCCccCCCChhHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 014373 262 FIRNHQTLGVDFASVHIYADSWISQTISDAHLQFTKSWMEAHIEDAEKYLRMPVLFTEF 320 (426)
Q Consensus 262 ~~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~l~~~~~~a~~~~~kPv~v~Ef 320 (426)
|......-..||+.+|+|--+|-.. -....++.|.+ .|++|+|.|=
T Consensus 159 ~~~iv~a~~~dfvqlq~ny~d~~n~------------~~~~~l~~A~~-~~~gI~IMeP 204 (391)
T COG1453 159 FKEIVDAYPWDFVQLQYNYIDQKNQ------------AGTEGLKYAAS-KGLGIFIMEP 204 (391)
T ss_pred HHHHHhcCCcceEEeeeeeeccchh------------cccHHHHHHHh-CCCcEEEEee
Confidence 4444344458999999996554210 01234455666 7999999884
No 253
>PF10035 DUF2179: Uncharacterized protein conserved in bacteria (DUF2179); InterPro: IPR019264 This entry, found mostly in hypothetical bacterial proteins, has no known function. ; PDB: 3HLU_B.
Probab=31.93 E-value=50 Score=22.92 Aligned_cols=20 Identities=20% Similarity=0.509 Sum_probs=14.9
Q ss_pred HHHHHHHHHhcCCCCEEEec
Q 014373 215 IQEMAVYVKSIDAKHLVEIG 234 (426)
Q Consensus 215 ~~~~~~~Ir~~dp~~lV~~g 234 (426)
+.++.+.|+++||+..|++.
T Consensus 29 ~~~l~~~I~~~Dp~AFi~v~ 48 (55)
T PF10035_consen 29 LPKLKKIIKEIDPKAFISVS 48 (55)
T ss_dssp HHHHHHHHHCC-TT-EEEE-
T ss_pred HHHHHHHHHHhCCCEEEEEE
Confidence 47788999999999999875
No 254
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=31.84 E-value=5.8e+02 Score=27.91 Aligned_cols=239 Identities=9% Similarity=0.116 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHCCCCEEEeccccCCCcc-----cccCCCCCCChHHHHHHHHH-HHHHHHcCCEEEEecCC-CcCCCCC
Q 014373 63 GKVSELFHQASSAGLTVCRTWAFNDGQWR-----ALQTSPSVYDEEVFKALDFV-ISEAKKYKIRLILSLTN-NWDAYGG 135 (426)
Q Consensus 63 ~~~~~dl~~~~~~G~N~vRi~~~~~~~~~-----~~~~~~g~~~e~~l~~lD~~-l~~a~~~Gi~vil~l~~-~w~~~gg 135 (426)
.-+..-|+.++++|+|+|=+=+|.|..-. .+.| .+.=+=--+.+.++ -.+..+.|++|.-=+.- .|..-.+
T Consensus 334 ~nl~~l~~ri~~~~~~~VyLqafadp~gdg~~~~lYFp--nr~lPmraDlfnrvawql~tR~~v~vyAWmpvl~~~l~~~ 411 (672)
T PRK14581 334 ENLDKLVQRISDLRVTHVFLQAFSDPKGDGNIRQVYFP--NRWIPMRQDLFNRVVWQLASRPDVEVYAWMPVLAFDMDPS 411 (672)
T ss_pred hhHHHHHHHHHhcCCCEEEEEeeeCCCCCCceeeEEec--CCcccHHHhhhhHHHHHHHhhhCceEEEeeehhhccCCcc
Confidence 45678899999999999988667653100 0011 11111112334445 34556779988432210 0111011
Q ss_pred hhhHHHhhhhcCCCCCCCCCcC-----CCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEE--------------e
Q 014373 136 KAQYVKWGKAAGLNLTSDDEFF-----SHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWE--------------L 196 (426)
Q Consensus 136 ~~~y~~W~~~~g~~~~~~~~~~-----~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~we--------------L 196 (426)
.+....|... +.+.......| -+|++++..++.-+.++.. ..|.|+-|.|+..+--+| |
T Consensus 412 ~~~~~~~~~~-~~~~~~~~~~y~rlspf~~~~~~~i~~iy~DLa~~-~~~~GilfhDd~~l~d~ed~sp~a~~~y~~~gl 489 (672)
T PRK14581 412 LPRITRIDPK-TGKTSIDPDQYRRLSPFNPEVRQRIIDIYRDMAYS-APIDGIIYHDDAVMSDFEDASPDAIRAYEKAGF 489 (672)
T ss_pred cchhhhcccc-cCccccCCCCccccCCCCHHHHHHHHHHHHHHHhc-CCCCeEEeccccccccccccCHHHHHHHHhcCC
Confidence 1111122111 11111111112 2689999999988888875 578899888875443222 2
Q ss_pred ccCCCCCCCCChhHHH-----------HHHHHHHHHHHhcCCCCEEEeccccccCCCCCCCccCCCC--cccccccchhh
Q 014373 197 MNEPRCTSDPSGDTLQ-----------SWIQEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPN--SYATQVGTDFI 263 (426)
Q Consensus 197 ~NEp~~~~~~~~~~~~-----------~w~~~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~np~--~y~~~~g~d~~ 263 (426)
-..+... ..+++.+. .+..++++.+|...|..+.|... .|... ..+|. .|- .+++.
T Consensus 490 ~~~~~~~-~~~~~~~~~w~~~k~~~l~~f~~~l~~~v~~~~~p~~~tarn--iya~~-----~l~p~~~~w~---aQ~l~ 558 (672)
T PRK14581 490 PGSITTI-RQDPEMMQRWTRYKSKYLIDFTNELTREVRDIRGPQVKSARN--IFAMP-----ILEPESEAWF---AQNLD 558 (672)
T ss_pred CccHHhH-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccceehhc--ccccc-----cCChhHHHHH---HhHHH
Confidence 1111000 01223344 44567888899988766766552 33221 12332 121 12222
Q ss_pred hhcCCCCcceEEEeccCCCccCCCChhHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 014373 264 RNHQTLGVDFASVHIYADSWISQTISDAHLQFTKSWMEAHIEDAEKYL-RMPVLFTEFGVSA 324 (426)
Q Consensus 264 ~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~l~~~~~~a~~~~-~kPv~v~EfG~~~ 324 (426)
.. ...-|++.+=.||.- .... .....+|+.+.++..++.. ++-=+|-|.-...
T Consensus 559 ~~--~~~yD~~a~mamp~m--e~~~----~~~~~~w~~~l~~~v~~~~~~~~k~vfelQ~~d 612 (672)
T PRK14581 559 DF--LANYDWVAPMAMPLM--EKVP----LSESNEWLAELVNKVAQRPGALEKTVFELQSKD 612 (672)
T ss_pred HH--HhhcchhHHhhchhh--hccc----cccHHHHHHHHHHHHHhcCCcccceEEEeeccc
Confidence 11 235677666666532 1111 0123566766655444322 2233677776654
No 255
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=31.81 E-value=1.6e+02 Score=27.22 Aligned_cols=47 Identities=23% Similarity=0.248 Sum_probs=35.5
Q ss_pred HHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcC
Q 014373 68 LFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWD 131 (426)
Q Consensus 68 dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~ 131 (426)
..+.+.+.|.|.+=+-...+ ..-+..++..|+++|+.+.++|.+.|.
T Consensus 72 e~~ma~~aGAd~~tV~g~A~-----------------~~TI~~~i~~A~~~~~~v~iDl~~~~~ 118 (217)
T COG0269 72 EARMAFEAGADWVTVLGAAD-----------------DATIKKAIKVAKEYGKEVQIDLIGVWD 118 (217)
T ss_pred HHHHHHHcCCCEEEEEecCC-----------------HHHHHHHHHHHHHcCCeEEEEeecCCC
Confidence 34456699999888854321 345568999999999999999988763
No 256
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=31.49 E-value=4.5e+02 Score=25.27 Aligned_cols=79 Identities=15% Similarity=0.195 Sum_probs=45.8
Q ss_pred CCeE-EEEEEeeccchhhhccCCCChHHHHHHHHHH----HHCCCCEEEeccccCCCcccccCCCCCCChHH-HHHHHHH
Q 014373 38 NDQP-FYVNGFNTYWLMVFAADQSTRGKVSELFHQA----SSAGLTVCRTWAFNDGQWRALQTSPSVYDEEV-FKALDFV 111 (426)
Q Consensus 38 ~G~~-~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~----~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~-l~~lD~~ 111 (426)
++++ +++.|-+.-. +++.+.+.-+.+ +++|++.+|=-.|. .+-..+|..|.--. -+.|+.+
T Consensus 13 ~~~~~~~iaGPCsvE---------s~e~~~~iA~~lk~i~~~~g~~~~fK~sf~----KapRTSp~sFqG~G~eeGL~iL 79 (281)
T PRK12457 13 NDLPFVLFGGINVLE---------SLDFTLDVCGEYVEVTRKLGIPFVFKASFD----KANRSSIHSYRGVGLDEGLRIF 79 (281)
T ss_pred CCCceEEEecCCccc---------CHHHHHHHHHHHHHHHHHCCCcEEeeeccC----CCCCCCCCCCCCCCHHHHHHHH
Confidence 3444 5666776532 344444444444 36999998875452 11123344443222 2455556
Q ss_pred HHHHHHcCCEEEEecCCC
Q 014373 112 ISEAKKYKIRLILSLTNN 129 (426)
Q Consensus 112 l~~a~~~Gi~vil~l~~~ 129 (426)
-+..++.|+.|+-++|+.
T Consensus 80 ~~vk~~~GlpvvTeV~~~ 97 (281)
T PRK12457 80 EEVKARFGVPVITDVHEV 97 (281)
T ss_pred HHHHHHHCCceEEEeCCH
Confidence 678899999999999874
No 257
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=31.15 E-value=72 Score=30.67 Aligned_cols=60 Identities=15% Similarity=0.090 Sum_probs=42.2
Q ss_pred HHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014373 66 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 66 ~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
.++++.+.+.|++.|-++.-... . -.+..-+.--++.++.+..+++.|+++|++|.+.+-
T Consensus 77 ~~die~A~~~g~~~v~i~~s~S~-~-~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~e 136 (279)
T cd07947 77 KEDLKLVKEMGLKETGILMSVSD-Y-HIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHLE 136 (279)
T ss_pred HHHHHHHHHcCcCEEEEEEcCCH-H-HHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 46778888899998888542110 0 011122333578899999999999999999998873
No 258
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=31.07 E-value=4.3e+02 Score=25.44 Aligned_cols=56 Identities=20% Similarity=0.269 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhc
Q 014373 157 FSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSI 225 (426)
Q Consensus 157 ~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~ 225 (426)
..+++.++.|.+-+..++++ |+=+.--+-||- |... .+.+.+..+++++.+++++.
T Consensus 87 ~~~~~~R~~fi~siv~~l~~--------~~fDGidiDWE~---P~~~--~d~~n~~~ll~elr~~l~~~ 142 (299)
T cd02879 87 ASDPTARKAFINSSIKVARK--------YGFDGLDLDWEF---PSSQ--VEMENFGKLLEEWRAAVKDE 142 (299)
T ss_pred hCCHHHHHHHHHHHHHHHHH--------hCCCceeecccC---CCCh--hHHHHHHHHHHHHHHHHHHH
Confidence 45788999999988888888 654544555774 3211 23467888899998888743
No 259
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=30.93 E-value=71 Score=29.86 Aligned_cols=64 Identities=16% Similarity=0.129 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEe
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILS 125 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~ 125 (426)
-+.+.+.++...++|++.|=+++|+...|.+-+.+-..+-.-....|+..++...++||+|-+.
T Consensus 34 ~~~l~~~~~~c~~~gI~~lTvyaFS~eN~~R~~~Ev~~Lm~L~~~~l~~~~~~~~~~~irvr~i 97 (233)
T PRK14833 34 VKTLREITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKLLKKYLKDERSTYLENNIRFKAI 97 (233)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeecchhhcCcCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 3678899999999999999999998655532111000000111233444555677889988664
No 260
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=30.91 E-value=1.7e+02 Score=34.08 Aligned_cols=65 Identities=11% Similarity=0.142 Sum_probs=43.9
Q ss_pred EEEEEeeccchhhhccCCCChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCE
Q 014373 42 FYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIR 121 (426)
Q Consensus 42 ~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~ 121 (426)
..++|.|.. +......+.++..++.+++.|++++|++-.-+ .++.|...++++++.|..
T Consensus 609 ml~Rg~n~v-----gy~~ypd~vv~~f~~~~~~~GidifrifD~lN----------------~~~n~~~~~~~~~~~g~~ 667 (1143)
T TIGR01235 609 MLLRGANGV-----GYTNYPDNVVKYFVKQAAQGGIDIFRVFDSLN----------------WVENMRVGMDAVAEAGKV 667 (1143)
T ss_pred eeecccccc-----CccCCCHHHHHHHHHHHHHcCCCEEEECccCc----------------CHHHHHHHHHHHHHcCCE
Confidence 346777852 11111256788888999999999999963211 155667788888888887
Q ss_pred EEEecC
Q 014373 122 LILSLT 127 (426)
Q Consensus 122 vil~l~ 127 (426)
+-.++.
T Consensus 668 ~~~~i~ 673 (1143)
T TIGR01235 668 VEAAIC 673 (1143)
T ss_pred EEEEEE
Confidence 766654
No 261
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=30.17 E-value=85 Score=29.65 Aligned_cols=60 Identities=15% Similarity=0.278 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHH----HHHHHHHHHHHHcCCEEEEe
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVF----KALDFVISEAKKYKIRLILS 125 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l----~~lD~~l~~a~~~Gi~vil~ 125 (426)
.+.+.+.++.+.++|+..|=+++|+...|.+-. .+.+ ..+ ..++..++...++||+|-+.
T Consensus 44 ~~~l~~i~~~c~~lgI~~lTvYaFS~eN~~R~~---~EV~-~Lm~L~~~~l~~~~~~~~~~~iri~vi 107 (249)
T PRK14834 44 VEALRRVVRAAGELGIGYLTLFAFSSENWSRPA---SEVS-DLFGLLRLFIRRDLAELHRNGVRVRVI 107 (249)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEeccccCCCH---HHHH-HHHHHHHHHHHHHHHHHHHCCcEEEEE
Confidence 367889999999999999999999865553211 1111 112 23444556677899988653
No 262
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=30.04 E-value=82 Score=29.43 Aligned_cols=61 Identities=18% Similarity=0.146 Sum_probs=42.0
Q ss_pred HHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC
Q 014373 66 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN 128 (426)
Q Consensus 66 ~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~ 128 (426)
+++++.+++.|+..||+........ .+..-+.-.+..++.+-..++.|+++|+.+.+.+..
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~--~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~ 137 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETH--SRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLED 137 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHH--HHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 6889999999999999964321000 000011112457888889999999999999998743
No 263
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=29.98 E-value=4.5e+02 Score=25.89 Aligned_cols=65 Identities=17% Similarity=0.345 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCC-----CCCChhHHHHHHHHHHHHHHhcCCCCEEEe
Q 014373 159 HTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCT-----SDPSGDTLQSWIQEMAVYVKSIDAKHLVEI 233 (426)
Q Consensus 159 ~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~-----~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~ 233 (426)
+++.++.|.+-+..++++ |+=+.--+-||--+.+... ...+.+.+..+++++.+++++ +.++++
T Consensus 88 ~~~~R~~Fi~si~~~~~~--------~~fDGidiDwE~P~~~~~~~~~~~~~~d~~n~~~ll~elr~~l~~---~~~ls~ 156 (345)
T cd02878 88 KPANRDTFANNVVNFVNK--------YNLDGVDFDWEYPGAPDIPGIPAGDPDDGKNYLEFLKLLKSKLPS---GKSLSI 156 (345)
T ss_pred CHHHHHHHHHHHHHHHHH--------cCCCceeecccCCcccCCCCCCCCChHHHHHHHHHHHHHHHHhCc---CcEEEE
Confidence 788899999888888888 6544444557754433211 111245677888888777754 556666
Q ss_pred c
Q 014373 234 G 234 (426)
Q Consensus 234 g 234 (426)
.
T Consensus 157 a 157 (345)
T cd02878 157 A 157 (345)
T ss_pred E
Confidence 4
No 264
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=29.71 E-value=1.4e+02 Score=28.43 Aligned_cols=54 Identities=9% Similarity=0.107 Sum_probs=43.7
Q ss_pred HHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCC
Q 014373 69 FHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNN 129 (426)
Q Consensus 69 l~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~ 129 (426)
-..+|+.|.+.+.+.++.+. ..| ..|+.-+..+.++.+.|.+.+|-.++.+..+
T Consensus 117 a~riK~~G~~avK~Lvy~~~------D~~-e~neqk~a~ierigsec~aedi~f~lE~lty 170 (306)
T COG3684 117 AKRIKEDGGDAVKFLVYYRS------DED-EINEQKLAYIERIGSECHAEDLPFFLEPLTY 170 (306)
T ss_pred HHHHHHhcccceEEEEEEcC------Cch-HHhHHHHHHHHHHHHHhhhcCCceeEeeeec
Confidence 45789999999999776322 223 6788999999999999999999999987543
No 265
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=29.38 E-value=1.3e+02 Score=31.19 Aligned_cols=50 Identities=18% Similarity=0.243 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
.+.++..++.+.+.|+..+|++... ++ ++.+...++.|+++|+.+...+.
T Consensus 94 dDvv~~fv~~A~~~Gvd~irif~~l--------------nd--~~n~~~~i~~ak~~G~~v~~~i~ 143 (467)
T PRK14041 94 DDVVELFVKKVAEYGLDIIRIFDAL--------------ND--IRNLEKSIEVAKKHGAHVQGAIS 143 (467)
T ss_pred chhhHHHHHHHHHCCcCEEEEEEeC--------------CH--HHHHHHHHHHHHHCCCEEEEEEE
Confidence 3567778999999999999996431 11 56788899999999999886663
No 266
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional
Probab=29.26 E-value=72 Score=30.24 Aligned_cols=63 Identities=21% Similarity=0.274 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEe
Q 014373 63 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILS 125 (426)
Q Consensus 63 ~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~ 125 (426)
+.+.+.++.+.++|+..|=+++|+...|.+-+.+-...=.-..+.|+..+....++||+|-+.
T Consensus 45 ~~~~~iv~~c~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm~l~~~~l~~~~~~~~~~~irv~vi 107 (253)
T PRK14836 45 RAVRRTIEFCLEKGIEMLTLFAFSSENWLRPADEVSALMELFLKALDREVDKLHRNGIRVRFI 107 (253)
T ss_pred HHHHHHHHHHHHcCCCEEehhHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 578899999999999999999997554532211100000113344555566778899988653
No 267
>PLN02229 alpha-galactosidase
Probab=29.05 E-value=2.1e+02 Score=29.35 Aligned_cols=80 Identities=14% Similarity=0.218 Sum_probs=49.2
Q ss_pred EEEEEeeccchhhhccCCCChHHHHHHHHHH-----HHCCCCEEEeccccCCCcccc-cCCCCCC--ChHHHH-HHHHHH
Q 014373 42 FYVNGFNTYWLMVFAADQSTRGKVSELFHQA-----SSAGLTVCRTWAFNDGQWRAL-QTSPSVY--DEEVFK-ALDFVI 112 (426)
Q Consensus 42 ~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~-----~~~G~N~vRi~~~~~~~~~~~-~~~~g~~--~e~~l~-~lD~~l 112 (426)
.-+.|.|.|...... .+++.+.+..+.| +++|.+.|=| |..|..- ..+.|.+ |++-|- .|..+.
T Consensus 62 tPpmGWnSWn~~~~~---i~E~~i~~~ad~~v~~Gl~~~Gy~yv~i----DDgW~~~~rd~~G~l~~d~~rFP~G~k~la 134 (427)
T PLN02229 62 TPQMGWNSWNFFACN---INETVIKETADALVSTGLADLGYIHVNI----DDCWSNLKRDSKGQLVPDPKTFPSGIKLLA 134 (427)
T ss_pred CCCceEEchhhhCcc---cCHHHHHHHHHHHHHhHHHhCCCEEEEE----cCCcCCCCcCCCCCEEEChhhcCCcHHHHH
Confidence 356788876443322 2466777777764 8899998776 2234211 1112322 333333 478899
Q ss_pred HHHHHcCCEEEEecCC
Q 014373 113 SEAKKYKIRLILSLTN 128 (426)
Q Consensus 113 ~~a~~~Gi~vil~l~~ 128 (426)
+..++.|||.=|-...
T Consensus 135 dyiH~~GlKfGIy~d~ 150 (427)
T PLN02229 135 DYVHSKGLKLGIYSDA 150 (427)
T ss_pred HHHHHCCCceEEeccC
Confidence 9999999999886543
No 268
>PRK10658 putative alpha-glucosidase; Provisional
Probab=28.98 E-value=1.7e+02 Score=32.01 Aligned_cols=108 Identities=13% Similarity=0.208 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCccc-ccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhHH
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRA-LQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYV 140 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~-~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~ 140 (426)
.+.+.+.++.+++.|+.+==++ +. ..|.. ..-..-++|++.|-....+++..++.|+++++-+.-.-.. ..+.|.
T Consensus 282 e~~v~~~~~~~r~~~iP~d~i~-lD-~~w~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~--~s~~f~ 357 (665)
T PRK10658 282 EATVNSFIDGMAERDLPLHVFH-FD-CFWMKEFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQ--KSPLFK 357 (665)
T ss_pred HHHHHHHHHHHHHcCCCceEEE-Ec-hhhhcCCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCC--CchHHH
Confidence 4568888899999998743332 11 11210 0001223566666666789999999999999876432110 111121
Q ss_pred HhhhhcC--------CCC--------CCCCCcCCCHHHHHHHHHHHHHHHh
Q 014373 141 KWGKAAG--------LNL--------TSDDEFFSHTTLKSYYKAHVKTVLN 175 (426)
Q Consensus 141 ~W~~~~g--------~~~--------~~~~~~~~~~~~~~~~~~~~~~iv~ 175 (426)
.= ...| .+. ..-.+ |++|++++.+.+.++.++.
T Consensus 358 e~-~~~gy~vk~~~G~~~~~~~W~g~~~~~D-ftnp~ar~W~~~~~~~l~d 406 (665)
T PRK10658 358 EG-KEKGYLLKRPDGSVWQWDKWQPGMAIVD-FTNPDACKWYADKLKGLLD 406 (665)
T ss_pred HH-HHCCeEEECCCCCEeeeeecCCCceeec-CCCHHHHHHHHHHHHHHHh
Confidence 10 0001 000 00112 6789999999999988775
No 269
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=28.72 E-value=2.5e+02 Score=27.20 Aligned_cols=103 Identities=17% Similarity=0.355 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhHHHhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccc
Q 014373 102 EEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFT 181 (426)
Q Consensus 102 e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~t 181 (426)
...++.+..+. ++..|++|++.+.. |.... . .|. .+..+++.++.|.+-+..++++
T Consensus 58 ~~~~~~~~~~~--~~~~~~kvllsigg-~~~~~--~---~~~-----------~~~~~~~~r~~f~~~i~~~l~~----- 113 (343)
T PF00704_consen 58 SSGFKNLKELK--AKNPGVKVLLSIGG-WGMSS--D---GFS-----------QLLSNPAKRQNFINNIVSFLKK----- 113 (343)
T ss_dssp HHHHHHHHHHH--HHHTT-EEEEEEEE-TTSSH--H---HHH-----------HHHHSHHHHHHHHHHHHHHHHH-----
T ss_pred ccchhHHHHHH--hhccCceEEEEecc-ccccc--c---ccc-----------cccccHHHHHHHHHhhhhhhcc-----
Confidence 34455554444 56669999999833 21110 0 121 1133677888888888888888
Q ss_pred cccccCCCcEEEEEec-cCCCCCCCCChhHHHHHHHHHHHHHHhcCC---CCEEEec
Q 014373 182 NLTYKNDPTIFAWELM-NEPRCTSDPSGDTLQSWIQEMAVYVKSIDA---KHLVEIG 234 (426)
Q Consensus 182 g~~y~~~p~I~~weL~-NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp---~~lV~~g 234 (426)
|+=+.--+-||-. +++. ......+..+++++.+.+++... +.+|++.
T Consensus 114 ---y~~DGidiD~e~~~~~~~---~~~~~~~~~~l~~L~~~l~~~~~~~~~~~ls~a 164 (343)
T PF00704_consen 114 ---YGFDGIDIDWEYPSSSGD---PQDKDNYTAFLKELRKALKRANRSGKGYILSVA 164 (343)
T ss_dssp ---HT-SEEEEEESSTTSTSS---TTHHHHHHHHHHHHHHHHHHHHHHHSTSEEEEE
T ss_pred ---cCcceeeeeeeecccccc---chhhhhhhhhhhhhhhhhcccccccceeEEeec
Confidence 6543333334332 1111 12346788899999988887543 6677665
No 270
>KOG2566 consensus Beta-glucocerebrosidase [Carbohydrate transport and metabolism]
Probab=28.69 E-value=2.8e+02 Score=28.05 Aligned_cols=36 Identities=31% Similarity=0.454 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHhcccccccccccCCCcEEEEEe--ccCCCCCCC
Q 014373 161 TLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWEL--MNEPRCTSD 205 (426)
Q Consensus 161 ~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL--~NEp~~~~~ 205 (426)
.+-+.|.+|+-++.+. |..+ .|--|.| .|||....+
T Consensus 226 ~yhqtya~YfvkFlea--------Y~~~-gi~FWglt~qNEPstG~d 263 (518)
T KOG2566|consen 226 IYHQTYARYFVKFLEA--------YAKH-GIQFWGLTTQNEPSTGSD 263 (518)
T ss_pred hhHHHHHHHHHHHHHH--------HHhc-CceEEeecccCCCCcCcc
Confidence 4556666776677776 7766 3555766 899987654
No 271
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=28.62 E-value=5.1e+02 Score=24.53 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEE
Q 014373 295 FTKSWMEAHIEDAEKYLRMPVLFT 318 (426)
Q Consensus 295 ~~~~~l~~~~~~a~~~~~kPv~v~ 318 (426)
.....++.+++.|++ .+|||+|=
T Consensus 109 ~Q~~~F~~ql~lA~~-~~lPviIH 131 (256)
T COG0084 109 RQEEVFEAQLELAKE-LNLPVIIH 131 (256)
T ss_pred HHHHHHHHHHHHHHH-cCCCEEEE
Confidence 345667888889998 99999974
No 272
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=28.06 E-value=89 Score=29.66 Aligned_cols=59 Identities=17% Similarity=0.064 Sum_probs=38.2
Q ss_pred HHHHHHHHHCC----CCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014373 66 SELFHQASSAG----LTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSL 126 (426)
Q Consensus 66 ~~dl~~~~~~G----~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l 126 (426)
.++++.+.+.| ++.||++..... ...+..-+.-.++.++.+..++..|++.|++|.+.+
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~--~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 134 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSD--IHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSA 134 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCH--HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEee
Confidence 46667777777 999999642110 001111122235678888999999999999988664
No 273
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=28.04 E-value=2.5e+02 Score=27.12 Aligned_cols=78 Identities=14% Similarity=0.249 Sum_probs=46.7
Q ss_pred CeEEEEEEeeccchhhhccCCCChHHHHHHHHHHHH----CCCCEEEeccccCCCcccccCCCCCCChHH-HHHHHHHHH
Q 014373 39 DQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASS----AGLTVCRTWAFNDGQWRALQTSPSVYDEEV-FKALDFVIS 113 (426)
Q Consensus 39 G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~----~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~-l~~lD~~l~ 113 (426)
+..+.+.|-+.- .+++.+.+.-+.+|+ +|++.||=-.|.- .-..+|..|.--+ -+.|+-+-+
T Consensus 15 ~~~~lIAGPC~i---------Es~e~~~~~A~~lk~~~~~~g~~~i~kgsfkK----ApRTSp~sFrG~G~eeGL~iL~~ 81 (290)
T PLN03033 15 EPFFLLAGPNVI---------ESEEHILRMAKHIKDISTKLGLPLVFKSSFDK----ANRTSSKSFRGPGMAEGLKILEK 81 (290)
T ss_pred CCeEEEecCChh---------cCHHHHHHHHHHHHHHHHhCCCcEEEEeeccC----CCCCCCCCCCCCCHHHHHHHHHH
Confidence 334467777753 234555555555555 5999999865530 0123344443222 244555557
Q ss_pred HHHHcCCEEEEecCCC
Q 014373 114 EAKKYKIRLILSLTNN 129 (426)
Q Consensus 114 ~a~~~Gi~vil~l~~~ 129 (426)
..++.|+.|+-++|+.
T Consensus 82 vk~~~glpvvTeV~~~ 97 (290)
T PLN03033 82 VKVAYDLPIVTDVHES 97 (290)
T ss_pred HHHHHCCceEEeeCCH
Confidence 7889999999999874
No 274
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=27.86 E-value=1.6e+02 Score=26.92 Aligned_cols=44 Identities=7% Similarity=-0.001 Sum_probs=33.4
Q ss_pred HHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014373 69 FHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSL 126 (426)
Q Consensus 69 l~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l 126 (426)
...++++|++.+=+- +++. + |.|+. +.+-+..|.++||.+|+|+
T Consensus 74 ~~mLkd~G~~~viiG-HSER--------R--f~Etd---i~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 74 AEMLKDIGAKGTLIN-HSER--------R--MKLAD---IEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHHcCCCEEEEC-cccC--------C--CCccH---HHHHHHHHHHCCCEEEEEE
Confidence 357889999988873 3321 1 55554 6788899999999999998
No 275
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=27.58 E-value=5.2e+02 Score=24.25 Aligned_cols=50 Identities=10% Similarity=0.087 Sum_probs=32.6
Q ss_pred HHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC
Q 014373 69 FHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN 128 (426)
Q Consensus 69 l~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~ 128 (426)
...|+++|++.+=+-+ ++. + -.|+| .-+.+.+-+..|.++||.+|+|+-.
T Consensus 77 ~~mL~d~G~~~viiGH-SER--R------~~f~E-td~~i~~Kv~~al~~gl~pIvCvGE 126 (244)
T PF00121_consen 77 AEMLKDLGCKYVIIGH-SER--R------QYFGE-TDEIINKKVKAALENGLTPIVCVGE 126 (244)
T ss_dssp HHHHHHTTESEEEESC-HHH--H------HHST--BHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred HHHHHHhhCCEEEecc-ccc--c------Ccccc-ccHHHHHHHHHHHHCCCEEEEEecc
Confidence 4678899999998833 221 0 01121 1345667888999999999999843
No 276
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=27.27 E-value=1.7e+02 Score=30.45 Aligned_cols=49 Identities=29% Similarity=0.351 Sum_probs=34.4
Q ss_pred HHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEe
Q 014373 65 VSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILS 125 (426)
Q Consensus 65 ~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~ 125 (426)
-.+.|+.|-++|+|++|+. |+.+.+ ++.-+.++.+=+.+++.|..|=|-
T Consensus 19 s~e~l~~li~aG~nV~RlN-fSHG~~-----------e~h~~~i~~vR~~~~~~~~~vaIl 67 (477)
T COG0469 19 SEEMLEKLIEAGMNVVRLN-FSHGDH-----------EEHKKRIDNVREAAEKLGRPVAIL 67 (477)
T ss_pred CHHHHHHHHHccCcEEEEe-cCCCCh-----------HHHHHHHHHHHHHHHHhCCceEEE
Confidence 4577889999999999994 443321 445667777777888887766443
No 277
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=27.15 E-value=2.3e+02 Score=29.70 Aligned_cols=58 Identities=17% Similarity=0.152 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
.+.+...++.+++.|++-|++++|.|+.- . . ...++..|+++.+.+++.|..-|.++.
T Consensus 123 ~~hl~~l~~~a~~~g~~~v~vH~~~DGRD--~--~----p~s~~~~~~~l~~~~~~~~~~~iasv~ 180 (501)
T TIGR01307 123 IDHLIALIELAAERGIEKVVLHAFTDGRD--T--A----PKSAESYLEQLQAFLKEIGNGRIATIS 180 (501)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEecCCCC--C--C----chhHHHHHHHHHHHHHHhCCEEEEEEe
Confidence 46788899999999999999999987731 1 1 245678888888888887877777764
No 278
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=27.14 E-value=1.1e+02 Score=29.59 Aligned_cols=64 Identities=19% Similarity=0.244 Sum_probs=42.6
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCC---ccc---ccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQ---WRA---LQTSPSVYDEEVFKALDFVISEAKKYKIRLILSL 126 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~---~~~---~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l 126 (426)
...++++.|+.++..|+|++=+=.-.+-+ ++. +....+.. .-+..+..+|..|++.||++|..+
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv--~~f~Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSV--NKFKDIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhcc--ccccccHHHHHHHHhcCeEEEEEE
Confidence 35788999999999999998873322111 211 00001111 226678899999999999998765
No 279
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=27.11 E-value=90 Score=29.55 Aligned_cols=60 Identities=15% Similarity=0.262 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCC---hHHHHHHHHHHHHHHHcCCEEEE
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYD---EEVFKALDFVISEAKKYKIRLIL 124 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~---e~~l~~lD~~l~~a~~~Gi~vil 124 (426)
.+.+.+.++.+.++|+..|=+++|+...|.+-+. +.+ .-.-..++..++...++||+|-+
T Consensus 48 ~~~l~~i~~~c~~~gI~~lTvyaFS~EN~~Rp~~---EV~~Lm~L~~~~l~~~~~~~~~~~irv~~ 110 (253)
T PRK14832 48 ARTLKELLRCCKDWGIKALTAYAFSTENWQRPIE---EVDFLMLLFERLLRRELAQMHREGVRISF 110 (253)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHH---HHHHHHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 3678899999999999999999998655532111 111 01122344455667888998866
No 280
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=27.08 E-value=1.9e+02 Score=25.90 Aligned_cols=44 Identities=20% Similarity=0.143 Sum_probs=33.0
Q ss_pred HHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC
Q 014373 68 LFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN 128 (426)
Q Consensus 68 dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~ 128 (426)
+++.+.++|.+.|=++... + -..+.++++.|+++|+++++.+.+
T Consensus 68 ~~~~~~~~Gad~i~vh~~~----------~-------~~~~~~~i~~~~~~g~~~~~~~~~ 111 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVA----------D-------DATIKGAVKAAKKHGKEVQVDLIN 111 (206)
T ss_pred HHHHHHHcCCCEEEEeccC----------C-------HHHHHHHHHHHHHcCCEEEEEecC
Confidence 5788899999988775321 1 123467899999999999998754
No 281
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=26.64 E-value=99 Score=29.09 Aligned_cols=64 Identities=11% Similarity=0.159 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEe
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILS 125 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~ 125 (426)
.+.+.+.++.+.++|+..|=+++|+...|.+-+.+-..+=.=.-+.+...++...++||++-+.
T Consensus 44 ~~~l~~iv~~c~~~gI~~vTvYaFS~eN~kR~~~Ev~~lm~L~~~~l~~~~~~~~~~~iri~~i 107 (243)
T PRK14829 44 EPVLFDVVAGAIEAGVPYLSLYTFSTENWKRSPDEVRFLMGFSRDVIHRRREQMDEWGVRVRWS 107 (243)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeecchhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 3678899999999999999999997655532111100000001223444455678899998653
No 282
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=26.27 E-value=5.5e+02 Score=29.03 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHcCCEEEEecC
Q 014373 102 EEVFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 102 e~~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
+..++.|..+|+.|+++||+||-.++
T Consensus 804 ~~~~~~l~~~i~~~~~~~~~~ig~~~ 829 (912)
T TIGR02171 804 NENMNSLKAFIDETAKKGVKVIGTIF 829 (912)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 45688999999999999999998874
No 283
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=26.07 E-value=5e+02 Score=25.59 Aligned_cols=67 Identities=21% Similarity=0.305 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHHHHCCCCEEEecc-----------ccCCCccc-ccCCCCCCCh------HHHHHHHHHHHHHHHcCCEE
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWA-----------FNDGQWRA-LQTSPSVYDE------EVFKALDFVISEAKKYKIRL 122 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~-----------~~~~~~~~-~~~~~g~~~e------~~l~~lD~~l~~a~~~Gi~v 122 (426)
+.+.+++.++.+++.|+.+==|++ +.+..|.. ....+..+++ +.|-....+|+.+++.|+++
T Consensus 22 ~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~~Lh~~G~kv 101 (340)
T cd06597 22 TQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMIDELHEQGVKV 101 (340)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHHHHHHCCCEE
Confidence 578999999999999997555432 01111100 0001112222 23445789999999999999
Q ss_pred EEecC
Q 014373 123 ILSLT 127 (426)
Q Consensus 123 il~l~ 127 (426)
++-++
T Consensus 102 ~l~v~ 106 (340)
T cd06597 102 LLWQI 106 (340)
T ss_pred EEEec
Confidence 87543
No 284
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=26.05 E-value=1.7e+02 Score=27.36 Aligned_cols=50 Identities=8% Similarity=0.070 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC
Q 014373 64 KVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN 128 (426)
Q Consensus 64 ~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~ 128 (426)
..++.++.+++.|++.|=++... + +..+.++++++.++++||++++.++.
T Consensus 89 ~~~~~i~~~~~~Gadgvii~dlp------~---------e~~~~~~~~~~~~~~~Gl~~~~~v~p 138 (244)
T PRK13125 89 SLDNFLNMARDVGADGVLFPDLL------I---------DYPDDLEKYVEIIKNKGLKPVFFTSP 138 (244)
T ss_pred CHHHHHHHHHHcCCCEEEECCCC------C---------CcHHHHHHHHHHHHHcCCCEEEEECC
Confidence 45566777888888877764210 0 11345678999999999999998853
No 285
>PF03749 SfsA: Sugar fermentation stimulation protein; InterPro: IPR005224 The sugar fermentation stimulation protein is a probable regulatory factor involved in maltose metabolism. It contains a putative DNA-binding domain, and was isolated as a gene which enabled Escherichia coli W3110 (strain MK2001) to use maltose [].
Probab=25.70 E-value=1.8e+02 Score=26.85 Aligned_cols=57 Identities=11% Similarity=0.124 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEe
Q 014373 64 KVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILS 125 (426)
Q Consensus 64 ~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~ 125 (426)
.--+.|..+.+.|..++=+++....+-..+.|.. ..|++ +-+.+..|.+.|+.++..
T Consensus 144 kHL~eL~~l~~~G~ra~vlFvvqr~d~~~f~p~~-~~Dp~----fa~~l~~A~~~GV~v~a~ 200 (215)
T PF03749_consen 144 KHLRELAELAEEGYRAAVLFVVQRPDAERFRPNR-EIDPE----FAEALREAAEAGVEVLAY 200 (215)
T ss_pred HHHHHHHHHHhccCcEEEEEEEECCCCCEEeECh-hcCHH----HHHHHHHHHHCCCEEEEE
Confidence 3345677777889888877764321111222221 23443 347888999999998664
No 286
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=25.68 E-value=1.5e+02 Score=29.17 Aligned_cols=48 Identities=21% Similarity=0.205 Sum_probs=33.6
Q ss_pred HHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014373 66 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSL 126 (426)
Q Consensus 66 ~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l 126 (426)
++.|+.+.++|++-||++.- .| ++...+..-..|..|+++||-|=+.+
T Consensus 124 ~e~l~~L~eAGLDEIRfHp~----------~~---~~~~~e~~i~~l~~A~~~g~dvG~Ei 171 (353)
T COG2108 124 EEALKALAEAGLDEIRFHPP----------RP---GSKSSEKYIENLKIAKKYGMDVGVEI 171 (353)
T ss_pred HHHHHHHHhCCCCeEEecCC----------Cc---cccccHHHHHHHHHHHHhCccceeec
Confidence 56778899999999998421 11 22334445567888999999887765
No 287
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=25.35 E-value=3.6e+02 Score=25.02 Aligned_cols=65 Identities=20% Similarity=0.081 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccC-CCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQT-SPSVYDEEVFKALDFVISEAKKYKIRLILSLTN 128 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~-~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~ 128 (426)
.+.+++.++.++++|+.+|-+..... +..-.+ .|..-.+...+.+..+.+.|+++|+++-+..+.
T Consensus 83 ~~~~~~~i~~a~~lg~~~vv~~~g~~--~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~i~l~~e~~~ 148 (274)
T COG1082 83 LEELKRAIELAKELGAKVVVVHPGLG--AGADDPDSPEEARERWAEALEELAEIAEELGIGLALENHH 148 (274)
T ss_pred HHHHHHHHHHHHHcCCCeEEeecccC--CcCCCCCCCcccHHHHHHHHHHHHHHHHHhCCceEEeecC
Confidence 45667788999999999888743211 100010 121122668899999999999999999887643
No 288
>COG1489 SfsA DNA-binding protein, stimulates sugar fermentation [General function prediction only]
Probab=24.35 E-value=3.9e+02 Score=24.99 Aligned_cols=58 Identities=10% Similarity=0.094 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEe
Q 014373 63 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILS 125 (426)
Q Consensus 63 ~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~ 125 (426)
..--++|..+++.|..++=+++..-.+-..+.|. ..+|+ .+..++..|.+.|+.++..
T Consensus 154 ~KHLreL~~~~~~G~ra~vlf~v~r~d~~~F~P~-~e~Dp----~fa~~l~~A~~~GVev~~~ 211 (235)
T COG1489 154 QKHLRELERLAKEGYRAVVLFLVLRSDITRFSPN-REIDP----KFAELLREAIKAGVEVLAY 211 (235)
T ss_pred HHHHHHHHHHHHcCCceEEEEEEecCCCcEECcc-cccCH----HHHHHHHHHHHcCCEEEEE
Confidence 3456778888999999888876332111222221 12343 4568889999999998775
No 289
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=24.28 E-value=6.5e+02 Score=24.28 Aligned_cols=156 Identities=12% Similarity=0.165 Sum_probs=83.0
Q ss_pred CChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhH
Q 014373 60 STRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQY 139 (426)
Q Consensus 60 ~~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y 139 (426)
.+.+.-++.-+.++.||++.|=|-....+ .+ .+.+-..+-..|.+.++.+=-..|.+-. .|+.|+.
T Consensus 97 lD~~EP~rvAeaV~~mgLkyVViTsVdRD---DL-------~DGGA~hfa~~i~~Ire~~P~t~iEvL~--PDF~G~~-- 162 (306)
T COG0320 97 LDPDEPERVAEAVKDMGLKYVVITSVDRD---DL-------PDGGAQHFAECIRAIRELNPQTTIEVLT--PDFRGND-- 162 (306)
T ss_pred CCCchHHHHHHHHHHhCCCeEEEEeeccc---cc-------cccchHHHHHHHHHHHhhCCCceEEEeC--ccccCCH--
Confidence 45667777888889999999888433211 11 1233455667888888877333333211 1233321
Q ss_pred HHhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEEEEEeccCCCCCCCCChhHHHHHHHHHH
Q 014373 140 VKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMA 219 (426)
Q Consensus 140 ~~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~ 219 (426)
..++.+++ ..|.|+.=.+.+=|+.+..--..+-.+|--.+.
T Consensus 163 ----------------------------~al~~v~~-----------~~pdV~nHNvETVprL~~~VRp~A~Y~~SL~~L 203 (306)
T COG0320 163 ----------------------------DALEIVAD-----------AGPDVFNHNVETVPRLYPRVRPGATYERSLSLL 203 (306)
T ss_pred ----------------------------HHHHHHHh-----------cCcchhhcccccchhcccccCCCCcHHHHHHHH
Confidence 11223322 245566666666666553221222345556778
Q ss_pred HHHHhcCCCCEEEeccccccCCCCCCCccCCCCcccccccchhhhhcCCCCcceEEEeccCC
Q 014373 220 VYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDFASVHIYAD 281 (426)
Q Consensus 220 ~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~np~~y~~~~g~d~~~~~~~~~iD~~s~H~Y~~ 281 (426)
+..|+.+|+.+.=+|..--.+....+ -..-..++...++|++++=.|..
T Consensus 204 ~~~k~~~P~i~TKSgiMlGLGEt~~E-------------v~e~m~DLr~~gvdilTiGQYlq 252 (306)
T COG0320 204 ERAKELGPDIPTKSGLMVGLGETDEE-------------VIEVMDDLRSAGVDILTIGQYLQ 252 (306)
T ss_pred HHHHHhCCCcccccceeeecCCcHHH-------------HHHHHHHHHHcCCCEEEeccccC
Confidence 88899998765433321101221110 01112345567899999999954
No 290
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=24.26 E-value=1.1e+02 Score=28.95 Aligned_cols=64 Identities=17% Similarity=0.273 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEe
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILS 125 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~ 125 (426)
.+.+.+.++.+.++|+..|=+++|+...|.+-+.+-...=.-.-..|+.+++.+.++|++|-+.
T Consensus 52 ~~~l~~~l~~c~~~GI~~vTvYaFS~eN~~R~~~Ev~~Lm~l~~~~l~~~~~~~~~~~iri~vi 115 (251)
T PRK14830 52 MDTVKKITKAASELGVKVLTLYAFSTENWKRPKDEVKFLMNLPVEFLDKFVPELIENNVKVNVI 115 (251)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 3578899999999999999999987544532211100000011234556666677889988664
No 291
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.91 E-value=1.1e+02 Score=29.57 Aligned_cols=64 Identities=13% Similarity=0.119 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEe
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILS 125 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~ 125 (426)
.+.+.+.++.+.++|+..|=+++|+...|.+-+.+-..+=.-.-+.|.+..+...++||++-+.
T Consensus 97 ~~~l~~v~~~c~~lGI~~lTvYaFStEN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~irir~i 160 (296)
T PRK14827 97 EAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLMGFNRDVVRRRRDNLNKMGVRIRWV 160 (296)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeecchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEE
Confidence 3577888999999999999999997655532111000000001223344456678899998654
No 292
>PRK01060 endonuclease IV; Provisional
Probab=23.48 E-value=2.6e+02 Score=26.29 Aligned_cols=57 Identities=14% Similarity=0.172 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHH--HHcCCEEEEec
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEA--KKYKIRLILSL 126 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a--~~~Gi~vil~l 126 (426)
.+.+++.++.++++|+.+|.++.- +. . +..-.++.++.+-+.+..+ .++|+++.|.-
T Consensus 88 ~~~~~~~i~~A~~lga~~vv~h~G----~~-~---~~~~~~~~~~~~~e~l~~l~~~~~gv~l~iEn 146 (281)
T PRK01060 88 RDFLIQEIERCAALGAKLLVFHPG----SH-L---GDIDEEDCLARIAESLNEALDKTQGVTIVLEN 146 (281)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCC----cC-C---CCCcHHHHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 457889999999999999999532 10 0 0111234666666666654 56787777764
No 293
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=23.36 E-value=2.1e+02 Score=30.51 Aligned_cols=62 Identities=11% Similarity=0.201 Sum_probs=39.0
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCC-------CC-----ChHHHHHHHHHHHHHHHcCCEEEEe
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPS-------VY-----DEEVFKALDFVISEAKKYKIRLILS 125 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g-------~~-----~e~~l~~lD~~l~~a~~~Gi~vil~ 125 (426)
+.+..++.|+.|+++-+|.+-+.-. .|.-.+|-|+ .+ .+-..+-+...|++|+++||+.+.-
T Consensus 116 ~~~~~~~~i~~L~~yHIN~~QFYDW---~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Y 189 (559)
T PF13199_consen 116 SAEDIEAEIDQLNRYHINGLQFYDW---MYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAY 189 (559)
T ss_dssp GHHHHHHHHHHHHHTT--EEEETS-----SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEE
T ss_pred CchhHHHHHHHHHhhCcCeEEEEee---ccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehh
Confidence 4578999999999999999999321 0111111111 11 1223667889999999999999886
No 294
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=22.92 E-value=2.9e+02 Score=26.61 Aligned_cols=81 Identities=16% Similarity=0.196 Sum_probs=47.0
Q ss_pred cEEEEEeccCCCCCCCC-Ch---hHHHHHHHHHHHHHHhc-CCCCEEEeccccccCCCCCCCccCCCCccccccc--c-h
Q 014373 190 TIFAWELMNEPRCTSDP-SG---DTLQSWIQEMAVYVKSI-DAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVG--T-D 261 (426)
Q Consensus 190 ~I~~weL~NEp~~~~~~-~~---~~~~~w~~~~~~~Ir~~-dp~~lV~~g~~g~~~~~~~~~~~~np~~y~~~~g--~-d 261 (426)
.|-++.|+-|....+.. ++ =.+.+.+.++++.||++ .|...||.+- .+ . +.....| ..| . -
T Consensus 19 gVdaF~IGSEl~gLT~iR~~~~~fPaV~~l~~LAa~VR~ilG~~~kitYAA-DW-s----EY~~~~p-----~dg~gd~~ 87 (299)
T PF13547_consen 19 GVDAFCIGSELRGLTRIRDGAGSFPAVEALRALAADVRAILGPGTKITYAA-DW-S----EYFGYQP-----ADGSGDVY 87 (299)
T ss_pred CCcEEEEchhhhhheeecCCCCCCcHHHHHHHHHHHHHHHhCCCceEEEec-cC-H----HhcCcCC-----CCCCCccc
Confidence 46778999999865421 11 12445568889999975 5888888762 11 0 0000111 011 0 0
Q ss_pred h--hhhcCCCCcceEEEeccCC
Q 014373 262 F--IRNHQTLGVDFASVHIYAD 281 (426)
Q Consensus 262 ~--~~~~~~~~iD~~s~H~Y~~ 281 (426)
| ....+.++|||+++..|.+
T Consensus 88 f~LDpLWa~~~IDfIGID~Y~P 109 (299)
T PF13547_consen 88 FHLDPLWADPNIDFIGIDNYFP 109 (299)
T ss_pred ccCcccccCCcCCEEEeecccc
Confidence 1 1234578999999999954
No 295
>PF14386 DUF4417: Domain of unknown function (DUF4417)
Probab=22.42 E-value=1.6e+02 Score=26.85 Aligned_cols=97 Identities=12% Similarity=0.146 Sum_probs=54.5
Q ss_pred HHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhHHHhhhhc
Q 014373 67 ELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAA 146 (426)
Q Consensus 67 ~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~ 146 (426)
+.++.+++ +..|=..-|+- ....|-...--..-+-..+-....++||+||.++. |.+ ...|.-|. .
T Consensus 65 ~~i~~l~~--~~~v~tPDfSl-----y~d~P~~~qi~n~yR~r~~g~~~q~~Gi~VIP~v~--W~~---~~s~~~~~--~ 130 (200)
T PF14386_consen 65 KYIERLKR--FDGVITPDFSL-----YSDMPRAMQIWNIYRSRWLGAYWQSNGIKVIPNVS--WSD---KRSFDFCF--D 130 (200)
T ss_pred HHHHHHHh--cCeEeCCCccc-----ccCCCHHHHHHHHHHHHHHHHHHHHCCCeEcceEE--ecC---cchHHHHH--h
Confidence 67777777 55444433321 11222111111233444566778999999999983 533 22333232 2
Q ss_pred CCCCCC-----CCCcCCCHHHHHHHHHHHHHHHhcc
Q 014373 147 GLNLTS-----DDEFFSHTTLKSYYKAHVKTVLNRV 177 (426)
Q Consensus 147 g~~~~~-----~~~~~~~~~~~~~~~~~~~~iv~r~ 177 (426)
|++..+ ....-++.+.++.|++=+++|++|+
T Consensus 131 gi~~~~ivaist~g~~~~~~~~~~f~~Gl~em~~rl 166 (200)
T PF14386_consen 131 GIPKGSIVAISTNGCINNKEDKKLFLDGLREMLKRL 166 (200)
T ss_pred hcccCCEEEEEEecccCCHHHHHHHHHHHHHHHhcc
Confidence 443221 1223557788999999999999993
No 296
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=22.41 E-value=1.1e+02 Score=29.04 Aligned_cols=49 Identities=12% Similarity=0.084 Sum_probs=30.4
Q ss_pred HHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014373 69 FHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 69 l~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
...++++|++.+=+- +++. +-.|+|. =+.+.+=+..|.++||.+|+|+-
T Consensus 79 ~~mLkd~G~~~viiG-HSER--------R~~f~Et-d~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 79 AEMLKDLGVKYVIIG-HSER--------RQYFGET-DELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred HHHHHHCCCCEEEeC-cccc--------cCccCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 457889999999883 3331 1122222 12223334459999999999984
No 297
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=22.39 E-value=1.8e+02 Score=26.77 Aligned_cols=55 Identities=22% Similarity=0.273 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014373 63 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 63 ~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
......++.+.++|++.|=+-.. .+ .. -..+.++.+.++.+.|+++|+++|++.+
T Consensus 76 ~~~~~~v~~a~~~Ga~~v~~~~~-~~------~~---~~~~~~~~i~~v~~~~~~~g~~~iie~~ 130 (235)
T cd00958 76 KVLVASVEDAVRLGADAVGVTVY-VG------SE---EEREMLEELARVAAEAHKYGLPLIAWMY 130 (235)
T ss_pred hhhhcCHHHHHHCCCCEEEEEEe-cC------Cc---hHHHHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 44555688899999996633111 00 00 1356788999999999999999999753
No 298
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=22.28 E-value=3.3e+02 Score=25.52 Aligned_cols=87 Identities=17% Similarity=0.156 Sum_probs=55.6
Q ss_pred CCCcEEEeCCeEEECCeEEEEEEeeccc--hhhhc-------cCCCChHHHHHHHHHHHHCCCCEEEeccccCCCccccc
Q 014373 24 DWQMVQKQGNQFVVNDQPFYVNGFNTYW--LMVFA-------ADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQ 94 (426)
Q Consensus 24 ~~~fv~~~g~~f~~~G~~~~~~G~N~~~--~~~~~-------~~~~~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~ 94 (426)
....++++|.++.-..--+.+.|.-.-- +.+.. +-.-+.+.+.+.+....+.|-.++|++.-
T Consensus 14 dpdLiTvkg~~ll~~advviYAGSLV~~elL~~~~~~aei~nSa~~tLeeIi~~m~~a~~~Gk~VvRLhSG--------- 84 (254)
T COG2875 14 DPDLITVKGQRLLEKADVVIYAGSLVPPELLEYCRPDAEIVNSASLTLEEIIDLMVDAVREGKDVVRLHSG--------- 84 (254)
T ss_pred CcceeeehHHHHHhhCCEEEECCCcCCHHHHhhcCCCCEEEecCcCCHHHHHHHHHHHHHcCCeEEEeecC---------
Confidence 3456889999888777777788864320 11110 11235688889999999999999999531
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCEEEEe
Q 014373 95 TSPSVYDEEVFKALDFVISEAKKYKIRLILS 125 (426)
Q Consensus 95 ~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~ 125 (426)
|+.....+-+-++..+++||-.-+.
T Consensus 85 ------DpsiYgA~~EQm~~L~~~gI~yevv 109 (254)
T COG2875 85 ------DPSIYGALAEQMRELEALGIPYEVV 109 (254)
T ss_pred ------ChhHHHHHHHHHHHHHHcCCCeEEe
Confidence 2333444445556677777755443
No 299
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=22.27 E-value=1.2e+02 Score=29.71 Aligned_cols=60 Identities=10% Similarity=0.107 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHH----HHHH---HHHHHHHcCCEEEEe
Q 014373 62 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFK----ALDF---VISEAKKYKIRLILS 125 (426)
Q Consensus 62 ~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~----~lD~---~l~~a~~~Gi~vil~ 125 (426)
.+.+++.++...++|+.+|=+++|+...|.+-+.+ .+ ..++ .|.. +.+.+.++||+|-+-
T Consensus 49 ~~~l~~il~~c~~lGIk~lTlYAFStENwkRp~~E---V~-~Lm~L~~~~l~~~~~~~~~l~~~~irirvi 115 (322)
T PTZ00349 49 SKALIQIIEICIKLKIKILSVFSFSLLNYNRSPEE---IH-FLFYLNLLILINEDFFFKFIKDNKIKIKII 115 (322)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeehhhhCCCHHH---HH-HHHHHHHHHHHHhhhhHHHHHHCCCEEEEE
Confidence 36788999999999999999999986556321111 00 1111 1112 245677899998663
No 300
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=22.25 E-value=78 Score=29.34 Aligned_cols=53 Identities=23% Similarity=0.335 Sum_probs=39.5
Q ss_pred HHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEe
Q 014373 66 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILS 125 (426)
Q Consensus 66 ~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~ 125 (426)
....+.+.++|.+.|=+-+. |..+. ++. ....++.+.+++++|+++||++|+.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~----~~~~~--~~~-~~~~~~~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVIN----YGALG--SGN-EDEVIEEIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEE----HHHHH--TTH-HHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeecc----ccccc--ccc-HHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 67888999999999998543 11111 122 3567889999999999999999998
No 301
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=22.11 E-value=1.7e+02 Score=30.21 Aligned_cols=59 Identities=12% Similarity=-0.022 Sum_probs=33.4
Q ss_pred HHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcC-CEEEEecC
Q 014373 65 VSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYK-IRLILSLT 127 (426)
Q Consensus 65 ~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~G-i~vil~l~ 127 (426)
-++.|+.|+++|+|-|-+-+ .... +.+...-|+.. ..+.+.+.++.++++| +.|.++|.
T Consensus 162 t~e~l~~l~~aGvnRiSiGV-QSf~-d~vLk~lgR~~--~~~~~~~~i~~l~~~g~~~v~~DlI 221 (449)
T PRK09058 162 DDEKADAALDAGANRFSIGV-QSFN-TQVRRRAGRKD--DREEVLARLEELVARDRAAVVCDLI 221 (449)
T ss_pred CHHHHHHHHHcCCCEEEecC-CcCC-HHHHHHhCCCC--CHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 35779999999999555522 1000 00000111111 1234456788889999 77888875
No 302
>COG2852 Very-short-patch-repair endonuclease [Replication, recombination, and repair]
Probab=21.87 E-value=1.7e+02 Score=24.49 Aligned_cols=13 Identities=46% Similarity=0.721 Sum_probs=11.1
Q ss_pred HHHHCCCCEEEec
Q 014373 71 QASSAGLTVCRTW 83 (426)
Q Consensus 71 ~~~~~G~N~vRi~ 83 (426)
.|.+.|..++|+|
T Consensus 89 ~L~~~G~~VLRf~ 101 (129)
T COG2852 89 FLESQGFTVLRFW 101 (129)
T ss_pred HHHhCCceEEEec
Confidence 4559999999996
No 303
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=21.85 E-value=5.8e+02 Score=25.42 Aligned_cols=83 Identities=12% Similarity=0.149 Sum_probs=59.1
Q ss_pred CCeEEEEEEeeccchhhhccCCCChHHHHHHHHHHHHCCCC-------EEEecccc---CCCcccccCCC---CCCC-hH
Q 014373 38 NDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLT-------VCRTWAFN---DGQWRALQTSP---SVYD-EE 103 (426)
Q Consensus 38 ~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~N-------~vRi~~~~---~~~~~~~~~~~---g~~~-e~ 103 (426)
|.+.+.++|-+.- .+.+...+.-+.+++++.. ++|+...- ...|..+-..| |.++ ++
T Consensus 51 d~rllvIvGPCSI---------hd~~~aleyA~rLk~l~~~~~d~l~ivmR~y~eKPRTs~gwkGl~~DP~ldgs~~i~~ 121 (356)
T PRK12822 51 DPRLLVIIGPCSI---------HDPQAALEYAKRLAVLQHQYLDQLYIVMRTYFEKPRTRKGWKGLIFDPDLDGSNDIEK 121 (356)
T ss_pred CCCeEEEEcCCcC---------CCHHHHHHHHHHHHHHHHhhcccEEEEEEeccccCCCCCCccccccCCCCCCCccHHH
Confidence 4566777887752 2457777888888899988 59986531 11254443222 5566 78
Q ss_pred HHHHHHHHHHHHHHcCCEEEEecCCC
Q 014373 104 VFKALDFVISEAKKYKIRLILSLTNN 129 (426)
Q Consensus 104 ~l~~lD~~l~~a~~~Gi~vil~l~~~ 129 (426)
+|..+.+++....+.|+.+.-.+.+.
T Consensus 122 GL~i~R~ll~~~~~~GlPvatE~ld~ 147 (356)
T PRK12822 122 GLRLARQLLLSINTLGLATATEFLDT 147 (356)
T ss_pred HHHHHHHHHHHHHHhCCCEEEeeccc
Confidence 99999999999999999998888664
No 304
>PF07611 DUF1574: Protein of unknown function (DUF1574); InterPro: IPR011468 This is a family of hypothetical proteins found in Leptospira interrogans and other bacteria.
Probab=21.82 E-value=1.1e+02 Score=30.33 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=25.2
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCEEEEe
Q 014373 98 SVYDEEVFKALDFVISEAKKYKIRLILS 125 (426)
Q Consensus 98 g~~~e~~l~~lD~~l~~a~~~Gi~vil~ 125 (426)
.+.++..+..+++++..|++.||++++-
T Consensus 244 f~~s~~q~~F~e~~L~~ake~~I~~vl~ 271 (345)
T PF07611_consen 244 FTFSETQFFFLEKFLKLAKENGIPVVLW 271 (345)
T ss_pred CCCChhHHHHHHHHHHHHHHcCCcEEEE
Confidence 3568899999999999999999999885
No 305
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=21.54 E-value=6.7e+02 Score=23.44 Aligned_cols=86 Identities=14% Similarity=0.141 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhHHHhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccc
Q 014373 102 EEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFT 181 (426)
Q Consensus 102 e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~t 181 (426)
+..++.+.++++.|++.|...++...... . .-..++..+.+.+.++.+++.
T Consensus 81 ~~~~~~~~~~i~~A~~lG~~~v~~~~g~~---~---------------------~~~~~~~~~~~~~~l~~l~~~----- 131 (279)
T cd00019 81 EKSIERLKDEIERCEELGIRLLVFHPGSY---L---------------------GQSKEEGLKRVIEALNELIDK----- 131 (279)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECCCCC---C---------------------CCCHHHHHHHHHHHHHHHHHh-----
Confidence 45677888888888888888655421100 0 012345667778888888885
Q ss_pred cccccCCCcEEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhcC
Q 014373 182 NLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSID 226 (426)
Q Consensus 182 g~~y~~~p~I~~weL~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~d 226 (426)
-+.....++ +-|.+..... +..=..++...|++++
T Consensus 132 ---a~~~gi~l~--lEn~~~~~~~-----~~~t~~~~~~li~~v~ 166 (279)
T cd00019 132 ---AETKGVVIA--LETMAGQGNE-----IGSSFEELKEIIDLIK 166 (279)
T ss_pred ---ccCCCCEEE--EeCCCCCCCC-----CCCCHHHHHHHHHhcC
Confidence 444444444 4455443210 0001245666677776
No 306
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=21.44 E-value=96 Score=31.05 Aligned_cols=63 Identities=13% Similarity=0.151 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHCCCCEEEeccccCCC--cc--cccCCCC-CCChHHHHHHHHHHHHHHHcCCEEEEe
Q 014373 63 GKVSELFHQASSAGLTVCRTWAFNDGQ--WR--ALQTSPS-VYDEEVFKALDFVISEAKKYKIRLILS 125 (426)
Q Consensus 63 ~~~~~dl~~~~~~G~N~vRi~~~~~~~--~~--~~~~~~g-~~~e~~l~~lD~~l~~a~~~Gi~vil~ 125 (426)
++.+...+.++.-++++|=.=-..+.. +. .-...|. .|.+..++.|..+|..++++||+||+.
T Consensus 10 D~~~a~~~l~~~g~~d~l~~d~LaE~tma~~~~~~~~~p~~gY~~~~~~~L~~~L~~~~~~gIkvI~N 77 (362)
T PF07287_consen 10 DRPDAAVRLARGGDVDYLVGDYLAERTMAILARAKRKDPTKGYAPDFVRDLRPLLPAAAEKGIKVITN 77 (362)
T ss_pred CcHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhCCCCEEEe
Confidence 455666677777788877651111100 00 0112222 388999999999999999999999986
No 307
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=21.22 E-value=5.9e+02 Score=25.39 Aligned_cols=83 Identities=11% Similarity=0.157 Sum_probs=55.2
Q ss_pred CCeEEEEEEeeccchhhhccCCCChHHHHHHHHHHHHCC-------CCEEEecccc---CCCcccccCC---CCCCC-hH
Q 014373 38 NDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAG-------LTVCRTWAFN---DGQWRALQTS---PSVYD-EE 103 (426)
Q Consensus 38 ~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G-------~N~vRi~~~~---~~~~~~~~~~---~g~~~-e~ 103 (426)
|.+.+.++|-+.-. +.+.+.+.-+.++++| +.++|...+- ..+|..+-.. .|.++ ++
T Consensus 51 d~rllvI~GPCSIe---------d~e~a~eyA~~Lk~l~~~~~d~l~ivmR~y~~KPRTs~g~kGl~~DP~ldgs~~i~~ 121 (349)
T PRK09261 51 DDRLLVVVGPCSIH---------DPKAALEYARRLAKLREELKDKLEIVMRVYFEKPRTTVGWKGLINDPDLDGSFDIND 121 (349)
T ss_pred CCCeEEEEcCCcCC---------CHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCCCCCcCCCcCcCccccccHHH
Confidence 56777888888532 3455555555555555 4689996532 1235444322 25677 88
Q ss_pred HHHHHHHHHHHHHHcCCEEEEecCCC
Q 014373 104 VFKALDFVISEAKKYKIRLILSLTNN 129 (426)
Q Consensus 104 ~l~~lD~~l~~a~~~Gi~vil~l~~~ 129 (426)
+|..+.+++-...+.||.++-.+.+.
T Consensus 122 GL~~~R~ll~~~~e~GlpvatE~ld~ 147 (349)
T PRK09261 122 GLRIARKLLLDINELGLPAATEFLDP 147 (349)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEeccc
Confidence 99999999888999999998887653
No 308
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=20.94 E-value=6e+02 Score=28.30 Aligned_cols=64 Identities=13% Similarity=0.141 Sum_probs=43.6
Q ss_pred ChHHHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014373 61 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 127 (426)
Q Consensus 61 ~~~~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~ 127 (426)
+...+++..+.++++|+..==+|. |..|.. ....-.+|+..+..+-.+++..+++|+|+|+.++
T Consensus 309 nls~~~dvv~~~~~agiPld~~~~--DiDyMd-~ykDFTvd~~~fp~~~~fv~~Lh~~G~kyvliid 372 (805)
T KOG1065|consen 309 NLSVVRDVVENYRAAGIPLDVIVI--DIDYMD-GYKDFTVDKVWFPDLKDFVDDLHARGFKYVLIID 372 (805)
T ss_pred cHHHHHHHHHHHHHcCCCcceeee--ehhhhh-cccceeeccccCcchHHHHHHHHhCCCeEEEEeC
Confidence 457788888999999998544443 222210 0112245666666677899999999999999885
No 309
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=20.87 E-value=2.8e+02 Score=28.08 Aligned_cols=57 Identities=12% Similarity=0.247 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCEEEeccccccCCCCCCCccCCCCcccccccchhhhhcCCCCcceEEEeccCCC
Q 014373 210 TLQSWIQEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDFASVHIYADS 282 (426)
Q Consensus 210 ~~~~w~~~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~np~~y~~~~g~d~~~~~~~~~iD~~s~H~Y~~~ 282 (426)
.+..|++++.. +|+.-|+++|.+...+ .. ++..| .++.........|++.++++.++
T Consensus 96 g~~~~l~~i~~-~k~~~~~~pvIaSi~~---~~-------s~~~~-----~~~a~~~e~~GaD~iELNiSCPn 152 (385)
T PLN02495 96 PFETMLAEFKQ-LKEEYPDRILIASIME---EY-------NKDAW-----EEIIERVEETGVDALEINFSCPH 152 (385)
T ss_pred CHHHHHHHHHH-HHhhCCCCcEEEEccC---CC-------CHHHH-----HHHHHHHHhcCCCEEEEECCCCC
Confidence 47788888644 5555567666554322 11 11113 22333333345899999998665
No 310
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=20.86 E-value=4.5e+02 Score=24.42 Aligned_cols=53 Identities=19% Similarity=0.145 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHCCCCEEEec-cccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCE-EEEecC
Q 014373 63 GKVSELFHQASSAGLTVCRTW-AFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIR-LILSLT 127 (426)
Q Consensus 63 ~~~~~dl~~~~~~G~N~vRi~-~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~-vil~l~ 127 (426)
+.+.+-++.+++.|-. +-+. .+++++.+ ...+.|-.++++|+++|++ |.|-++
T Consensus 14 ~~l~~~~~~~k~~~~~-lHl~GLlSdGGVH-----------Sh~~Hl~al~~~a~~~gv~~V~vH~f 68 (223)
T PF06415_consen 14 PVLLEAIEHAKKNGGR-LHLMGLLSDGGVH-----------SHIDHLFALIKLAKKQGVKKVYVHAF 68 (223)
T ss_dssp HHHHHHHHHHCCTT---EEEEEEESS-SSS-------------HHHHHHHHHHHHHTT-SEEEEEEE
T ss_pred HHHHHHHHHHHhcCCe-EEEEEEecCCCcc-----------ccHHHHHHHHHHHHHcCCCEEEEEEe
Confidence 5778888888888743 4443 34554322 2377888999999999986 656543
No 311
>COG1015 DeoB Phosphopentomutase [Carbohydrate transport and metabolism]
Probab=20.70 E-value=8.8e+02 Score=24.44 Aligned_cols=111 Identities=14% Similarity=0.222 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHCCCCEEEeccccCCCcccccCCCCC---C-ChHHHHHHHHHHHHHHHcCCE--EEEecCCCcCCCCChh
Q 014373 64 KVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSV---Y-DEEVFKALDFVISEAKKYKIR--LILSLTNNWDAYGGKA 137 (426)
Q Consensus 64 ~~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~---~-~e~~l~~lD~~l~~a~~~Gi~--vil~l~~~w~~~gg~~ 137 (426)
..+..|+.+++.|..+++|--.+|. +. ..|. + .....+.+|..+.++++.+-. ++..|.++=..+|.+.
T Consensus 225 ~~~tvl~~L~e~g~~vi~IGKI~DI-~~----~~Git~~~~~~~n~~~~d~tl~~~~~~~~~~~vFtNlVdfD~~yGHRr 299 (397)
T COG1015 225 FAPTVLDKLKEAGRPVIAIGKIADI-YA----GQGITEKVKAVSNMDGMDVTLEEMKTAEFNGLVFTNLVDFDSLYGHRR 299 (397)
T ss_pred ChhhHHHHHHHcCCceEEEeeHHhh-hc----cccccccccCCCcHHHHHHHHHHHhcCCCCcEEEEeeeeccccccccc
Confidence 4568899999999999999543321 11 0111 1 123467888999998865544 3333444322344331
Q ss_pred hHHHhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccccCCC-cEEEEEeccCCCCCC
Q 014373 138 QYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDP-TIFAWELMNEPRCTS 204 (426)
Q Consensus 138 ~y~~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iv~r~n~~tg~~y~~~p-~I~~weL~NEp~~~~ 204 (426)
- +.| | .++.+.|.+++..++.. .+.+. -|+.-+=+|.|....
T Consensus 300 D-v~g--------------Y--a~aLe~FD~rL~e~~~~--------l~edDlLiiTADHGnDPT~~g 342 (397)
T COG1015 300 D-VAG--------------Y--AAALEEFDRRLPELIEN--------LREDDLLIITADHGNDPTWGG 342 (397)
T ss_pred c-hHH--------------H--HHHHHHHHHHHHHHHHh--------cCCCCEEEEecCCCCCCCCCC
Confidence 1 111 2 36889999999999999 77664 466677799998764
No 312
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=20.48 E-value=1.5e+02 Score=28.69 Aligned_cols=61 Identities=11% Similarity=0.080 Sum_probs=37.2
Q ss_pred CChHHHHHHHHHHHHHHHcCCEEEEecCCCcCCCCChhhHHHhhhhcCCCCCCCCCcCCCHHHHHHHHHHH
Q 014373 100 YDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHV 170 (426)
Q Consensus 100 ~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 170 (426)
+++..++.+..+++.|+++|+.|-||= ..++.+......-.-|+ +.|-.+|......+..+
T Consensus 229 ~~Pavl~li~~vi~~a~~~g~~vsvCG-----e~a~~p~~~~~Ll~lGi-----~~lSv~p~~i~~vk~~i 289 (293)
T PF02896_consen 229 LHPAVLRLIKQVIDAAHKAGKPVSVCG-----EMASDPEAIPLLLGLGI-----RSLSVSPDSIPRVKKAI 289 (293)
T ss_dssp TSHHHHHHHHHHHHHHHHTT-EEEEES-----GGGGSHHHHHHHHHHT------SEEEE-GGGHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhcCcEEEEec-----CCCCCHHHHHHHHHcCC-----CEEEECHHHHHHHHHHH
Confidence 578999999999999999999998872 22333444444433453 23333555544444444
No 313
>PRK09389 (R)-citramalate synthase; Provisional
Probab=20.48 E-value=1.5e+02 Score=31.07 Aligned_cols=63 Identities=14% Similarity=0.025 Sum_probs=44.4
Q ss_pred HHHHHHHHHHCCCCEEEeccccCCCcccccCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCC
Q 014373 65 VSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNN 129 (426)
Q Consensus 65 ~~~dl~~~~~~G~N~vRi~~~~~~~~~~~~~~~g~~~e~~l~~lD~~l~~a~~~Gi~vil~l~~~ 129 (426)
.++|++.+.+.|++.|+++.-... .. ++..-+.--++.++.+...+..|+++|+.|.+++.+.
T Consensus 75 ~~~di~~a~~~g~~~v~i~~~~Sd-~h-~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~ 137 (488)
T PRK09389 75 VKVDIDAALECDVDSVHLVVPTSD-LH-IEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDA 137 (488)
T ss_pred CHHHHHHHHhCCcCEEEEEEccCH-HH-HHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeC
Confidence 367888999999999998652110 00 1111223347789999999999999999999987543
Done!