Query 014374
Match_columns 426
No_of_seqs 272 out of 940
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 04:30:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014374.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014374hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1318 Helix loop helix trans 99.4 6.7E-13 1.5E-17 136.5 6.3 92 259-350 226-326 (411)
2 cd00083 HLH Helix-loop-helix d 99.3 1.1E-12 2.3E-17 98.8 4.7 53 267-320 5-60 (60)
3 smart00353 HLH helix loop heli 99.3 7.5E-12 1.6E-16 92.8 6.3 49 271-320 1-52 (53)
4 PF00010 HLH: Helix-loop-helix 99.3 6.9E-12 1.5E-16 94.5 5.0 48 269-316 4-55 (55)
5 KOG1319 bHLHZip transcription 98.9 1.2E-09 2.7E-14 103.0 4.5 66 268-333 64-135 (229)
6 KOG4304 Transcriptional repres 98.4 1.4E-07 3.1E-12 92.2 2.2 53 269-321 35-94 (250)
7 KOG3561 Aryl-hydrocarbon recep 98.1 3.3E-06 7.1E-11 93.7 5.0 52 267-318 21-75 (803)
8 KOG2483 Upstream transcription 97.9 2.4E-05 5.3E-10 76.1 6.6 63 268-330 61-125 (232)
9 KOG2588 Predicted DNA-binding 97.8 1E-05 2.2E-10 90.7 2.3 66 265-330 275-340 (953)
10 PLN03217 transcription factor 97.6 0.00015 3.3E-09 61.4 5.9 57 275-332 16-78 (93)
11 KOG0561 bHLH transcription fac 97.3 0.00011 2.4E-09 74.1 2.1 51 270-321 64-116 (373)
12 KOG3960 Myogenic helix-loop-he 96.6 0.0048 1E-07 61.2 6.5 55 270-324 122-177 (284)
13 KOG4029 Transcription factor H 96.5 0.0023 5E-08 61.3 3.9 58 269-326 112-172 (228)
14 KOG3910 Helix loop helix trans 96.0 0.0083 1.8E-07 64.3 4.7 54 269-322 529-585 (632)
15 KOG4447 Transcription factor T 89.1 0.29 6.4E-06 45.9 2.6 47 269-316 81-129 (173)
16 KOG3558 Hypoxia-inducible fact 81.8 0.93 2E-05 50.8 2.4 42 272-313 52-96 (768)
17 KOG3560 Aryl-hydrocarbon recep 80.1 1.5 3.3E-05 48.2 3.3 40 274-314 33-76 (712)
18 KOG3559 Transcriptional regula 70.9 3.4 7.4E-05 44.3 2.9 44 272-315 7-53 (598)
19 KOG3898 Transcription factor N 67.9 5.6 0.00012 39.5 3.6 48 269-317 75-125 (254)
20 KOG4395 Transcription factor A 59.2 18 0.00038 36.8 5.2 60 258-320 169-230 (285)
21 PF13334 DUF4094: Domain of un 37.7 57 0.0012 28.1 4.4 26 304-329 67-92 (95)
22 KOG3582 Mlx interactors and re 36.3 19 0.00041 41.0 1.5 57 267-323 652-712 (856)
23 COG3074 Uncharacterized protei 34.6 55 0.0012 27.5 3.6 28 305-332 13-40 (79)
24 KOG4447 Transcription factor T 30.5 28 0.00061 33.0 1.5 43 273-316 29-73 (173)
25 KOG3582 Mlx interactors and re 26.9 22 0.00047 40.6 0.1 58 267-327 788-849 (856)
26 PRK15422 septal ring assembly 26.8 87 0.0019 26.6 3.6 28 305-332 13-40 (79)
27 PF06005 DUF904: Protein of un 25.3 1E+02 0.0023 25.3 3.7 26 305-330 13-38 (72)
28 PF14689 SPOB_a: Sensor_kinase 21.5 1.9E+02 0.0041 22.6 4.4 41 275-323 17-57 (62)
No 1
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.36 E-value=6.7e-13 Score=136.50 Aligned_cols=92 Identities=32% Similarity=0.497 Sum_probs=71.3
Q ss_pred hccccCCcCCccchhHHHHHHHHHHHHHHHhccCCCCCcC---CChhhhHHHHHHHHHHHHHHHHHHH------HhHhhc
Q 014374 259 MRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKI---TGKAVMLDEIINYVQSLQQQVEFLS------MKLATV 329 (426)
Q Consensus 259 ~RakR~~a~~~HslaERrRRekINer~~~LrsLVP~~~K~---tdKAsIL~eAIdYIK~LQ~QVq~Le------~~l~~~ 329 (426)
...|.+++++.|+++|||||++||+||++|..|||.|+.. .+|+.||..+++||++||+..+... ++++..
T Consensus 226 ~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le~~ 305 (411)
T KOG1318|consen 226 ALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQKKLEST 305 (411)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhH
Confidence 3344455667999999999999999999999999999432 3799999999999999998665333 444545
Q ss_pred CCcccccHHHhhhHHHHhhcC
Q 014374 330 NPELNLDIERILSKDILHARS 350 (426)
Q Consensus 330 ~p~~~~~~~~l~~~~~~~~~~ 350 (426)
+..+...+++|..+...|...
T Consensus 306 n~~L~~rieeLk~~~~~~~~~ 326 (411)
T KOG1318|consen 306 NQELALRIEELKSEAGRHGLQ 326 (411)
T ss_pred HHHHHHHHHHHHHHHHHhcCc
Confidence 555666788888877777644
No 2
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.34 E-value=1.1e-12 Score=98.78 Aligned_cols=53 Identities=36% Similarity=0.627 Sum_probs=48.5
Q ss_pred CCccchhHHHHHHHHHHHHHHHhccCCCC---CcCCChhhhHHHHHHHHHHHHHHHH
Q 014374 267 TNSHSLAERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQQVE 320 (426)
Q Consensus 267 ~~~HslaERrRRekINer~~~LrsLVP~~---~K~tdKAsIL~eAIdYIK~LQ~QVq 320 (426)
+..|+..||+||++||+.|..|+.|||.+ .+ .+|+.||+.||+||++|+.+++
T Consensus 5 r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k-~~k~~iL~~a~~yI~~L~~~~~ 60 (60)
T cd00083 5 REAHNLRERRRRERINDAFDELRSLLPTLPPSKK-LSKAEILRKAVDYIKSLQELLQ 60 (60)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHhC
Confidence 34799999999999999999999999998 45 5999999999999999998863
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.28 E-value=7.5e-12 Score=92.78 Aligned_cols=49 Identities=39% Similarity=0.596 Sum_probs=44.5
Q ss_pred chhHHHHHHHHHHHHHHHhccCCC---CCcCCChhhhHHHHHHHHHHHHHHHH
Q 014374 271 SLAERVRREKISERMRLLQELVPG---CNKITGKAVMLDEIINYVQSLQQQVE 320 (426)
Q Consensus 271 slaERrRRekINer~~~LrsLVP~---~~K~tdKAsIL~eAIdYIK~LQ~QVq 320 (426)
++.||+||++||+.|..|+.|||. ..+. +|++||+.||+||++|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~-~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKL-SKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999996 4454 999999999999999999886
No 4
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.25 E-value=6.9e-12 Score=94.45 Aligned_cols=48 Identities=38% Similarity=0.705 Sum_probs=44.2
Q ss_pred ccchhHHHHHHHHHHHHHHHhccCCCC----CcCCChhhhHHHHHHHHHHHH
Q 014374 269 SHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 316 (426)
Q Consensus 269 ~HslaERrRRekINer~~~LrsLVP~~----~K~tdKAsIL~eAIdYIK~LQ 316 (426)
.|+..||+||++||+.|..|+.|||.+ ....+|++||+.||+||++||
T Consensus 4 ~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 4 KHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 699999999999999999999999987 233599999999999999997
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.89 E-value=1.2e-09 Score=102.97 Aligned_cols=66 Identities=30% Similarity=0.519 Sum_probs=58.5
Q ss_pred CccchhHHHHHHHHHHHHHHHhccCCCCCcC------CChhhhHHHHHHHHHHHHHHHHHHHHhHhhcCCcc
Q 014374 268 NSHSLAERVRREKISERMRLLQELVPGCNKI------TGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPEL 333 (426)
Q Consensus 268 ~~HslaERrRRekINer~~~LrsLVP~~~K~------tdKAsIL~eAIdYIK~LQ~QVq~Le~~l~~~~p~~ 333 (426)
..|.-+||+||+.|+..+..|++|||.|... +.||.||.++|+||.+|.+++..-++++.+++.++
T Consensus 64 ~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~v 135 (229)
T KOG1319|consen 64 RAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDV 135 (229)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3699999999999999999999999977432 37999999999999999999999998888887654
No 6
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.37 E-value=1.4e-07 Score=92.21 Aligned_cols=53 Identities=28% Similarity=0.408 Sum_probs=46.4
Q ss_pred ccchhHHHHHHHHHHHHHHHhccCCCCCcC-------CChhhhHHHHHHHHHHHHHHHHH
Q 014374 269 SHSLAERVRREKISERMRLLQELVPGCNKI-------TGKAVMLDEIINYVQSLQQQVEF 321 (426)
Q Consensus 269 ~HslaERrRRekINer~~~LrsLVP~~~K~-------tdKAsIL~eAIdYIK~LQ~QVq~ 321 (426)
.|.+.|||||.|||+.+..|++|||.+-++ .+||.||+-|++|++.||.+...
T Consensus 35 ~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~ 94 (250)
T KOG4304|consen 35 RKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA 94 (250)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence 678999999999999999999999976443 27999999999999999975543
No 7
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.07 E-value=3.3e-06 Score=93.73 Aligned_cols=52 Identities=21% Similarity=0.375 Sum_probs=47.5
Q ss_pred CCccchhHHHHHHHHHHHHHHHhccCCCCC---cCCChhhhHHHHHHHHHHHHHH
Q 014374 267 TNSHSLAERVRREKISERMRLLQELVPGCN---KITGKAVMLDEIINYVQSLQQQ 318 (426)
Q Consensus 267 ~~~HslaERrRRekINer~~~LrsLVP~~~---K~tdKAsIL~eAIdYIK~LQ~Q 318 (426)
+.+|+.+|||||+++|..|.+|.+|||.|. .+.||-+||..||..||.++.+
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 458999999999999999999999999997 4459999999999999998875
No 8
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=97.88 E-value=2.4e-05 Score=76.15 Aligned_cols=63 Identities=22% Similarity=0.332 Sum_probs=52.4
Q ss_pred CccchhHHHHHHHHHHHHHHHhccCCCCCcCCC--hhhhHHHHHHHHHHHHHHHHHHHHhHhhcC
Q 014374 268 NSHSLAERVRREKISERMRLLQELVPGCNKITG--KAVMLDEIINYVQSLQQQVEFLSMKLATVN 330 (426)
Q Consensus 268 ~~HslaERrRRekINer~~~LrsLVP~~~K~td--KAsIL~eAIdYIK~LQ~QVq~Le~~l~~~~ 330 (426)
..|+.-||+||..|.+.|..|+.+||....-+. .++||+.|++||+.|+.+....+..++.+.
T Consensus 61 ~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l~ 125 (232)
T KOG2483|consen 61 AHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDLS 125 (232)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 479999999999999999999999996544322 589999999999999988777776665543
No 9
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=97.78 E-value=1e-05 Score=90.69 Aligned_cols=66 Identities=26% Similarity=0.477 Sum_probs=57.2
Q ss_pred CcCCccchhHHHHHHHHHHHHHHHhccCCCCCcCCChhhhHHHHHHHHHHHHHHHHHHHHhHhhcC
Q 014374 265 QATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVN 330 (426)
Q Consensus 265 ~a~~~HslaERrRRekINer~~~LrsLVP~~~K~tdKAsIL~eAIdYIK~LQ~QVq~Le~~l~~~~ 330 (426)
..+.+|+++|||-|..||++|..|++|||+..-+..|..+|..||+||++|+..-+.+....+.+.
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~ 340 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR 340 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence 456799999999999999999999999998765558999999999999999988877775555443
No 10
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.58 E-value=0.00015 Score=61.36 Aligned_cols=57 Identities=28% Similarity=0.530 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHhccCCCC------CcCCChhhhHHHHHHHHHHHHHHHHHHHHhHhhcCCc
Q 014374 275 RVRREKISERMRLLQELVPGC------NKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPE 332 (426)
Q Consensus 275 RrRRekINer~~~LrsLVP~~------~K~tdKAsIL~eAIdYIK~LQ~QVq~Le~~l~~~~p~ 332 (426)
|---+.|++-+..||.|+|.. .+. .-+-+|+||.+||+.|+++|..|++.+..+-..
T Consensus 16 risddqi~dLvsKLq~llPe~r~~r~s~k~-saskvLqEtC~YIrsLhrEvDdLSerLs~LL~t 78 (93)
T PLN03217 16 RISEDQINDLIIKLQQLLPELRDSRRSDKV-SAARVLQDTCNYIRNLHREVDDLSERLSELLAN 78 (93)
T ss_pred CCCHHHHHHHHHHHHHHChHHHhhhccccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334578999999999999964 233 567799999999999999999999999876443
No 11
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.29 E-value=0.00011 Score=74.11 Aligned_cols=51 Identities=25% Similarity=0.426 Sum_probs=44.7
Q ss_pred cchhHHHHHHHHHHHHHHHhccCCC--CCcCCChhhhHHHHHHHHHHHHHHHHH
Q 014374 270 HSLAERVRREKISERMRLLQELVPG--CNKITGKAVMLDEIINYVQSLQQQVEF 321 (426)
Q Consensus 270 HslaERrRRekINer~~~LrsLVP~--~~K~tdKAsIL~eAIdYIK~LQ~QVq~ 321 (426)
-+..||||=.-||-.|..||+|+|. ..|+ .||.||+.+.+||.+|+.+...
T Consensus 64 ANsNERRRMQSINAGFqsLr~LlPr~eGEKL-SKAAILQQTa~yI~~Le~~Kt~ 116 (373)
T KOG0561|consen 64 ANSNERRRMQSINAGFQSLRALLPRKEGEKL-SKAAILQQTADYIHQLEGHKTE 116 (373)
T ss_pred hcchHHHHHHhhhHHHHHHHHhcCcccchhh-HHHHHHHHHHHHHHHHHhcccc
Confidence 4567999999999999999999995 5676 9999999999999999875443
No 12
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=96.59 E-value=0.0048 Score=61.25 Aligned_cols=55 Identities=24% Similarity=0.306 Sum_probs=45.5
Q ss_pred cchhHHHHHHHHHHHHHHHhcc-CCCCCcCCChhhhHHHHHHHHHHHHHHHHHHHH
Q 014374 270 HSLAERVRREKISERMRLLQEL-VPGCNKITGKAVMLDEIINYVQSLQQQVEFLSM 324 (426)
Q Consensus 270 HslaERrRRekINer~~~LrsL-VP~~~K~tdKAsIL~eAIdYIK~LQ~QVq~Le~ 324 (426)
-.+.||||=.|+||-|.+|+.= +++-+.-.-|.-||.-||+||..||.-++++..
T Consensus 122 ATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~ 177 (284)
T KOG3960|consen 122 ATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQ 177 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3477999999999999999754 455554447999999999999999988877764
No 13
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=96.53 E-value=0.0023 Score=61.27 Aligned_cols=58 Identities=21% Similarity=0.268 Sum_probs=48.7
Q ss_pred ccchhHHHHHHHHHHHHHHHhccCCCC---CcCCChhhhHHHHHHHHHHHHHHHHHHHHhH
Q 014374 269 SHSLAERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQQVEFLSMKL 326 (426)
Q Consensus 269 ~HslaERrRRekINer~~~LrsLVP~~---~K~tdKAsIL~eAIdYIK~LQ~QVq~Le~~l 326 (426)
.++..||.|=.-+|..|..||.+||.. .|+..|..+|..||.||++|+.-++.-+..+
T Consensus 112 ~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~ 172 (228)
T KOG4029|consen 112 ARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL 172 (228)
T ss_pred hhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence 466779999999999999999999942 3445999999999999999998777666444
No 14
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=95.95 E-value=0.0083 Score=64.27 Aligned_cols=54 Identities=26% Similarity=0.321 Sum_probs=46.4
Q ss_pred ccchhHHHHHHHHHHHHHHHhccCC---CCCcCCChhhhHHHHHHHHHHHHHHHHHH
Q 014374 269 SHSLAERVRREKISERMRLLQELVP---GCNKITGKAVMLDEIINYVQSLQQQVEFL 322 (426)
Q Consensus 269 ~HslaERrRRekINer~~~LrsLVP---~~~K~tdKAsIL~eAIdYIK~LQ~QVq~L 322 (426)
..+..||.|=..||+-|++|..+.= ...|..-|-.||-.||.-|-.|++||++-
T Consensus 529 aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER 585 (632)
T KOG3910|consen 529 ANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER 585 (632)
T ss_pred hhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence 5789999999999999999998864 23444469999999999999999999864
No 15
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=89.11 E-value=0.29 Score=45.86 Aligned_cols=47 Identities=23% Similarity=0.410 Sum_probs=40.2
Q ss_pred ccchhHHHHHHHHHHHHHHHhccCCCC--CcCCChhhhHHHHHHHHHHHH
Q 014374 269 SHSLAERVRREKISERMRLLQELVPGC--NKITGKAVMLDEIINYVQSLQ 316 (426)
Q Consensus 269 ~HslaERrRRekINer~~~LrsLVP~~--~K~tdKAsIL~eAIdYIK~LQ 316 (426)
-|++.||+|-..+|+-|..||.+||.. .|+ .|.--|+-|-.||-+|=
T Consensus 81 ~anvrerqRtqsLn~AF~~lr~iiptlPsdkl-SkiqtLklA~ryidfl~ 129 (173)
T KOG4447|consen 81 MANVRERQRTQSLNEAFAALRKIIPTLPSDKL-SKIQTLKLAARYIDFLY 129 (173)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhhcCCCCcccc-ccccchhhcccCCchhh
Confidence 589999999999999999999999964 565 77777888888887764
No 16
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=81.77 E-value=0.93 Score=50.82 Aligned_cols=42 Identities=33% Similarity=0.392 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHHHHHHHhccCCCCCcC---CChhhhHHHHHHHHH
Q 014374 272 LAERVRREKISERMRLLQELVPGCNKI---TGKAVMLDEIINYVQ 313 (426)
Q Consensus 272 laERrRRekINer~~~LrsLVP~~~K~---tdKAsIL~eAIdYIK 313 (426)
-+.|.||.|=|+-|.+|..++|--..+ -|||+|+.-||-|++
T Consensus 52 dAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLR 96 (768)
T KOG3558|consen 52 DAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLR 96 (768)
T ss_pred hhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHH
Confidence 468999999999999999999943222 399999999999986
No 17
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=80.12 E-value=1.5 Score=48.21 Aligned_cols=40 Identities=20% Similarity=0.419 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHhccCCC----CCcCCChhhhHHHHHHHHHH
Q 014374 274 ERVRREKISERMRLLQELVPG----CNKITGKAVMLDEIINYVQS 314 (426)
Q Consensus 274 ERrRRekINer~~~LrsLVP~----~~K~tdKAsIL~eAIdYIK~ 314 (426)
-+|-|+|+|-.+..|.+|+|- .+|+ ||-+||.-++-|++-
T Consensus 33 SKRHRdRLNaELD~lAsLLPfpqdiisKL-DkLSVLRLSVSyLr~ 76 (712)
T KOG3560|consen 33 SKRHRDRLNAELDHLASLLPFPQDIISKL-DKLSVLRLSVSYLRV 76 (712)
T ss_pred chhHHHHhhhHHHHHHHhcCCCHHHHhhh-hhhhhhhhhHHHHHH
Confidence 467789999999999999994 5776 999999999999863
No 18
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=70.89 E-value=3.4 Score=44.30 Aligned_cols=44 Identities=30% Similarity=0.342 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHHHHHHhccCCCCCcC---CChhhhHHHHHHHHHHH
Q 014374 272 LAERVRREKISERMRLLQELVPGCNKI---TGKAVMLDEIINYVQSL 315 (426)
Q Consensus 272 laERrRRekINer~~~LrsLVP~~~K~---tdKAsIL~eAIdYIK~L 315 (426)
-+.|.||++=|..|.+|..|+|-...+ .||++|+.-|.-|||--
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr 53 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMR 53 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHH
Confidence 357999999999999999999954322 49999999999999853
No 19
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=67.88 E-value=5.6 Score=39.48 Aligned_cols=48 Identities=25% Similarity=0.425 Sum_probs=39.6
Q ss_pred ccchhHHHHHHHHHHHHHHHhccCCC---CCcCCChhhhHHHHHHHHHHHHH
Q 014374 269 SHSLAERVRREKISERMRLLQELVPG---CNKITGKAVMLDEIINYVQSLQQ 317 (426)
Q Consensus 269 ~HslaERrRRekINer~~~LrsLVP~---~~K~tdKAsIL~eAIdYIK~LQ~ 317 (426)
.-+..||+|=-.+|+-|..||.+||. ..|+ .|.-.|.-+=+||..|+.
T Consensus 75 kaNaRER~RMH~LNdAld~LReviP~~~~~~kl-skIetl~~a~~yi~als~ 125 (254)
T KOG3898|consen 75 KANARERTRMHDLNDALDALREVIPHGLHPPKL-SKIETLRLAANYIAALSE 125 (254)
T ss_pred cccchhhccccchhHHHHHhHhhccCcCCCCCC-CcchhHHhhhcchhhhcc
Confidence 34667999999999999999999994 3455 688889888888888764
No 20
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=59.18 E-value=18 Score=36.78 Aligned_cols=60 Identities=20% Similarity=0.244 Sum_probs=43.9
Q ss_pred hhccccCCcCCccchhHHHHHHHHHHHHHHHhccCCCCCc--CCChhhhHHHHHHHHHHHHHHHH
Q 014374 258 HMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNK--ITGKAVMLDEIINYVQSLQQQVE 320 (426)
Q Consensus 258 ~~RakR~~a~~~HslaERrRRekINer~~~LrsLVP~~~K--~tdKAsIL~eAIdYIK~LQ~QVq 320 (426)
.+.++|+.+ -+..||+|=..+|.-|..|+..||..+. +..|---|+-+-.||--|-....
T Consensus 169 ~v~~~rr~a---anarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~ 230 (285)
T KOG4395|consen 169 SVNSHRRLA---ANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLD 230 (285)
T ss_pred hHHHhhhcc---cchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhc
Confidence 344444443 5678999999999999999999996532 23677778888888877755443
No 21
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=37.69 E-value=57 Score=28.12 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhc
Q 014374 304 MLDEIINYVQSLQQQVEFLSMKLATV 329 (426)
Q Consensus 304 IL~eAIdYIK~LQ~QVq~Le~~l~~~ 329 (426)
=+.++-+-|+.|.+.|..|||+|++.
T Consensus 67 eV~kTh~aIq~LdKtIS~LEMELAaA 92 (95)
T PF13334_consen 67 EVSKTHEAIQSLDKTISSLEMELAAA 92 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777788999999999999999864
No 22
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=36.28 E-value=19 Score=41.04 Aligned_cols=57 Identities=23% Similarity=0.304 Sum_probs=46.4
Q ss_pred CCccchhHHHHHHHHHHHHHHHhccCCCCCcC----CChhhhHHHHHHHHHHHHHHHHHHH
Q 014374 267 TNSHSLAERVRREKISERMRLLQELVPGCNKI----TGKAVMLDEIINYVQSLQQQVEFLS 323 (426)
Q Consensus 267 ~~~HslaERrRRekINer~~~LrsLVP~~~K~----tdKAsIL~eAIdYIK~LQ~QVq~Le 323 (426)
...|+-+|.+||+.|.-.+..|-.++....++ +-+++-|+.+++||.-++.+...+.
T Consensus 652 ~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~ 712 (856)
T KOG3582|consen 652 PITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQ 712 (856)
T ss_pred cccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccc
Confidence 35799999999999999999999999866544 3566679999999998887655444
No 23
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.57 E-value=55 Score=27.52 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcCCc
Q 014374 305 LDEIINYVQSLQQQVEFLSMKLATVNPE 332 (426)
Q Consensus 305 L~eAIdYIK~LQ~QVq~Le~~l~~~~p~ 332 (426)
++.||+.|.-||..|++|.++...+..+
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~~e 40 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHHH
Confidence 5789999999999999999888766544
No 24
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=30.48 E-value=28 Score=33.02 Aligned_cols=43 Identities=35% Similarity=0.436 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCCcCCChh--hhHHHHHHHHHHHH
Q 014374 273 AERVRREKISERMRLLQELVPGCNKITGKA--VMLDEIINYVQSLQ 316 (426)
Q Consensus 273 aERrRRekINer~~~LrsLVP~~~K~tdKA--sIL~eAIdYIK~LQ 316 (426)
.||.|..++++.+..|+.|+|+..-- .|+ --|.-+-+||++|.
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~-gk~~~ktlr~~~~~~~~~d 73 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPAD-GKRGKKTLRIGTDSIQSLD 73 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCc-ccccccccccCCCchhhHH
Confidence 48899999999999999999986431 222 12555666666664
No 25
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=26.93 E-value=22 Score=40.63 Aligned_cols=58 Identities=16% Similarity=0.194 Sum_probs=47.4
Q ss_pred CCccchhHHHHHHHHHHHHHHHhccCCCC----CcCCChhhhHHHHHHHHHHHHHHHHHHHHhHh
Q 014374 267 TNSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQQQVEFLSMKLA 327 (426)
Q Consensus 267 ~~~HslaERrRRekINer~~~LrsLVP~~----~K~tdKAsIL~eAIdYIK~LQ~QVq~Le~~l~ 327 (426)
...|.-++||||..+-+++..|-+|+|.. .+++.+++||. +-|+.+|+.-+.+.++..
T Consensus 788 ~a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~~~ 849 (856)
T KOG3582|consen 788 SAGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEKIE 849 (856)
T ss_pred ecchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhhhh
Confidence 35788899999999999999999999954 44568999999 888888887777665543
No 26
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=26.83 E-value=87 Score=26.64 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcCCc
Q 014374 305 LDEIINYVQSLQQQVEFLSMKLATVNPE 332 (426)
Q Consensus 305 L~eAIdYIK~LQ~QVq~Le~~l~~~~p~ 332 (426)
++.||+-|.-||.+|++|.++...+..+
T Consensus 13 IqqAvdtI~LLqmEieELKekn~~L~~e 40 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999988776554
No 27
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=25.32 E-value=1e+02 Score=25.31 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcC
Q 014374 305 LDEIINYVQSLQQQVEFLSMKLATVN 330 (426)
Q Consensus 305 L~eAIdYIK~LQ~QVq~Le~~l~~~~ 330 (426)
+..||+-|.-||.+|+.|+.+...+.
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 57899999999999999998765554
No 28
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=21.52 E-value=1.9e+02 Score=22.62 Aligned_cols=41 Identities=20% Similarity=0.386 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcCCChhhhHHHHHHHHHHHHHHHHHHH
Q 014374 275 RVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLS 323 (426)
Q Consensus 275 RrRRekINer~~~LrsLVP~~~K~tdKAsIL~eAIdYIK~LQ~QVq~Le 323 (426)
|+-|--+...+.++..|+-- .+ .++|.+||+.+-.+++.++
T Consensus 17 R~~RHD~~NhLqvI~gllql-g~-------~~~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 17 RAQRHDFLNHLQVIYGLLQL-GK-------YEEAKEYIKELSKDLQQES 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-T--------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CC-------HHHHHHHHHHHHHHHHHHH
Confidence 77788888889998888752 22 4788999999999988875
Done!