Query 014374
Match_columns 426
No_of_seqs 272 out of 940
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 10:25:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014374.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014374hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ati_A MITF, microphthalmia-as 99.7 3.3E-18 1.1E-22 147.9 6.9 94 255-348 16-118 (118)
2 1am9_A Srebp-1A, protein (ster 99.6 8E-17 2.7E-21 130.9 4.5 64 267-330 7-70 (82)
3 1a0a_A BHLH, protein (phosphat 99.5 1.5E-15 5.1E-20 118.5 2.1 54 267-320 3-62 (63)
4 4h10_B Circadian locomoter out 99.5 4E-15 1.4E-19 119.1 4.0 58 266-323 8-65 (71)
5 1an4_A Protein (upstream stimu 99.5 3.8E-15 1.3E-19 115.5 3.1 56 265-320 4-64 (65)
6 4h10_A ARYL hydrocarbon recept 99.5 4.2E-15 1.4E-19 119.3 0.9 53 264-317 7-63 (73)
7 1hlo_A Protein (transcription 99.5 5.2E-14 1.8E-18 113.4 6.0 61 268-329 14-76 (80)
8 1nkp_B MAX protein, MYC proto- 99.5 7.4E-14 2.5E-18 112.9 6.3 62 268-330 4-67 (83)
9 1nkp_A C-MYC, MYC proto-oncoge 99.4 2E-13 6.9E-18 112.5 6.2 61 268-329 8-71 (88)
10 3u5v_A Protein MAX, transcript 99.3 5.9E-13 2E-17 107.4 3.8 56 268-323 7-65 (76)
11 1nlw_A MAD protein, MAX dimeri 99.3 9.5E-12 3.3E-16 101.1 7.4 60 269-329 4-66 (80)
12 4ath_A MITF, microphthalmia-as 99.1 8.6E-11 2.9E-15 96.7 5.9 72 277-348 3-83 (83)
13 4f3l_A Mclock, circadian locom 98.9 8E-10 2.7E-14 108.1 5.9 54 265-319 11-65 (361)
14 1mdy_A Protein (MYOD BHLH doma 98.9 3.7E-10 1.3E-14 89.5 2.3 51 269-320 15-67 (68)
15 2ql2_B Neurod1, neurogenic dif 98.8 3.7E-09 1.3E-13 81.8 5.3 52 269-320 5-58 (60)
16 4f3l_B BMAL1B; BHLH, PAS, circ 98.8 1.2E-09 4.2E-14 108.2 3.3 54 264-318 11-68 (387)
17 2lfh_A DNA-binding protein inh 98.3 2.3E-07 7.8E-12 73.9 2.4 45 272-317 20-67 (68)
18 4aya_A DNA-binding protein inh 97.6 0.00012 4.1E-09 61.8 6.4 49 274-322 33-83 (97)
19 2wt7_A Proto-oncogene protein 47.8 13 0.00043 28.3 2.9 46 274-333 1-46 (63)
20 2er8_A Regulatory protein Leu3 37.9 22 0.00075 26.5 2.9 21 310-330 49-69 (72)
21 1zme_C Proline utilization tra 36.8 16 0.00054 27.0 1.9 21 310-330 44-64 (70)
22 3muj_A Transcription factor CO 33.1 45 0.0015 29.7 4.4 35 280-315 95-133 (138)
23 3coq_A Regulatory protein GAL4 32.9 33 0.0011 26.3 3.2 26 310-335 45-70 (89)
24 2jee_A YIIU; FTSZ, septum, coi 29.9 48 0.0016 27.0 3.7 27 305-331 15-41 (81)
25 2wuj_A Septum site-determining 28.5 59 0.002 24.3 3.8 29 303-331 27-55 (57)
26 1pyi_A Protein (pyrimidine pat 25.9 56 0.0019 25.5 3.5 22 310-331 48-69 (96)
27 1hwt_C Protein (heme activator 25.3 34 0.0012 25.9 2.0 22 309-330 57-78 (81)
28 1dh3_A Transcription factor CR 22.4 61 0.0021 24.1 2.9 21 310-330 22-42 (55)
No 1
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.73 E-value=3.3e-18 Score=147.90 Aligned_cols=94 Identities=27% Similarity=0.372 Sum_probs=50.6
Q ss_pred hhhhhccccCCcCCccchhHHHHHHHHHHHHHHHhccCCCCCcC---CChhhhHHHHHHHHHHHHHHHHHHHHh------
Q 014374 255 EYIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKI---TGKAVMLDEIINYVQSLQQQVEFLSMK------ 325 (426)
Q Consensus 255 ~~~~~RakR~~a~~~HslaERrRRekINer~~~LrsLVP~~~K~---tdKAsIL~eAIdYIK~LQ~QVq~Le~~------ 325 (426)
...+..+++++++.+|+++||+||++||++|..|++|||.|.+. .+|++||++||+||++||.+++.|+..
T Consensus 16 ~~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~~~ 95 (118)
T 4ati_A 16 SEARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKK 95 (118)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred chHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888899999999999999999999999999998642 489999999999999999999999854
Q ss_pred HhhcCCcccccHHHhhhHHHHhh
Q 014374 326 LATVNPELNLDIERILSKDILHA 348 (426)
Q Consensus 326 l~~~~p~~~~~~~~l~~~~~~~~ 348 (426)
++..+..+...+++|+.++..|+
T Consensus 96 l~~~n~~L~~riqeLE~~a~~~g 118 (118)
T 4ati_A 96 LEHANRHLLLRVQELEMQARAHG 118 (118)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 44455567778899888877774
No 2
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.64 E-value=8e-17 Score=130.93 Aligned_cols=64 Identities=23% Similarity=0.380 Sum_probs=58.5
Q ss_pred CCccchhHHHHHHHHHHHHHHHhccCCCCCcCCChhhhHHHHHHHHHHHHHHHHHHHHhHhhcC
Q 014374 267 TNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVN 330 (426)
Q Consensus 267 ~~~HslaERrRRekINer~~~LrsLVP~~~K~tdKAsIL~eAIdYIK~LQ~QVq~Le~~l~~~~ 330 (426)
+.+|+++||+||++||++|..|++|||+++.+.+|++||++||+||++||.+++.|+.+.+.+.
T Consensus 7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~ 70 (82)
T 1am9_A 7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR 70 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999999999844459999999999999999999999998887664
No 3
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.53 E-value=1.5e-15 Score=118.47 Aligned_cols=54 Identities=30% Similarity=0.441 Sum_probs=48.1
Q ss_pred CCccchhHHHHHHHHHHHHHHHhccCCCCCcC------CChhhhHHHHHHHHHHHHHHHH
Q 014374 267 TNSHSLAERVRREKISERMRLLQELVPGCNKI------TGKAVMLDEIINYVQSLQQQVE 320 (426)
Q Consensus 267 ~~~HslaERrRRekINer~~~LrsLVP~~~K~------tdKAsIL~eAIdYIK~LQ~QVq 320 (426)
+++|+++||+||++||..|..|+.|||.+.+. .+||+||+.||+||+.||++|+
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 46899999999999999999999999977432 3699999999999999998764
No 4
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.52 E-value=4e-15 Score=119.09 Aligned_cols=58 Identities=19% Similarity=0.406 Sum_probs=51.5
Q ss_pred cCCccchhHHHHHHHHHHHHHHHhccCCCCCcCCChhhhHHHHHHHHHHHHHHHHHHH
Q 014374 266 ATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLS 323 (426)
Q Consensus 266 a~~~HslaERrRRekINer~~~LrsLVP~~~K~tdKAsIL~eAIdYIK~LQ~QVq~Le 323 (426)
.+.+|+++||+||++||++|.+|++|||++..+.+|++||+.||+||+.||.++.-|+
T Consensus 8 kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 8 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3458999999999999999999999999865334999999999999999999987664
No 5
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.51 E-value=3.8e-15 Score=115.48 Aligned_cols=56 Identities=27% Similarity=0.433 Sum_probs=49.5
Q ss_pred CcCCccchhHHHHHHHHHHHHHHHhccCCCCCc-----CCChhhhHHHHHHHHHHHHHHHH
Q 014374 265 QATNSHSLAERVRREKISERMRLLQELVPGCNK-----ITGKAVMLDEIINYVQSLQQQVE 320 (426)
Q Consensus 265 ~a~~~HslaERrRRekINer~~~LrsLVP~~~K-----~tdKAsIL~eAIdYIK~LQ~QVq 320 (426)
..+.+|+++||+||++||+.|..|++|||.|.. ..+|++||+.||+||++||.+++
T Consensus 4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 345689999999999999999999999999872 24999999999999999998753
No 6
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.48 E-value=4.2e-15 Score=119.26 Aligned_cols=53 Identities=30% Similarity=0.504 Sum_probs=47.5
Q ss_pred CCcCCccchhHHHHHHHHHHHHHHHhccCCCC----CcCCChhhhHHHHHHHHHHHHH
Q 014374 264 GQATNSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQQ 317 (426)
Q Consensus 264 ~~a~~~HslaERrRRekINer~~~LrsLVP~~----~K~tdKAsIL~eAIdYIK~LQ~ 317 (426)
.+++.+|+++||+||++||++|.+|+.|||.| .|+ |||+||+.||+||+.|+.
T Consensus 7 ~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~Kl-dKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 7 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCC-CHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccc-cHHHHHHHHHHHHHHHhc
Confidence 34456899999999999999999999999987 465 999999999999999974
No 7
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.46 E-value=5.2e-14 Score=113.38 Aligned_cols=61 Identities=25% Similarity=0.451 Sum_probs=56.8
Q ss_pred CccchhHHHHHHHHHHHHHHHhccCCCC--CcCCChhhhHHHHHHHHHHHHHHHHHHHHhHhhc
Q 014374 268 NSHSLAERVRREKISERMRLLQELVPGC--NKITGKAVMLDEIINYVQSLQQQVEFLSMKLATV 329 (426)
Q Consensus 268 ~~HslaERrRRekINer~~~LrsLVP~~--~K~tdKAsIL~eAIdYIK~LQ~QVq~Le~~l~~~ 329 (426)
..|+.+||+||.+||+.|..|++|||.+ .|+ +|+.||..||+||+.|+.+++.|+.+++.+
T Consensus 14 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~-sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L 76 (80)
T 1hlo_A 14 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA-SRAQILDKATEYIQYMRRKNHTHQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999987 464 999999999999999999999999988765
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.45 E-value=7.4e-14 Score=112.93 Aligned_cols=62 Identities=24% Similarity=0.448 Sum_probs=56.6
Q ss_pred CccchhHHHHHHHHHHHHHHHhccCCCC--CcCCChhhhHHHHHHHHHHHHHHHHHHHHhHhhcC
Q 014374 268 NSHSLAERVRREKISERMRLLQELVPGC--NKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVN 330 (426)
Q Consensus 268 ~~HslaERrRRekINer~~~LrsLVP~~--~K~tdKAsIL~eAIdYIK~LQ~QVq~Le~~l~~~~ 330 (426)
..|+.+||+||.+||+.|..|+++||.+ .|. +|++||..||+||+.|+.+++.|+.+++.+.
T Consensus 4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~-sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~ 67 (83)
T 1nkp_B 4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA-SRAQILDKATEYIQYMRRKNHTHQQDIDDLK 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999985 564 9999999999999999999999998877654
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.41 E-value=2e-13 Score=112.51 Aligned_cols=61 Identities=25% Similarity=0.390 Sum_probs=54.8
Q ss_pred CccchhHHHHHHHHHHHHHHHhccCCCC---CcCCChhhhHHHHHHHHHHHHHHHHHHHHhHhhc
Q 014374 268 NSHSLAERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQQVEFLSMKLATV 329 (426)
Q Consensus 268 ~~HslaERrRRekINer~~~LrsLVP~~---~K~tdKAsIL~eAIdYIK~LQ~QVq~Le~~l~~~ 329 (426)
..|+..||+||.+||++|..|+++||.+ .|. +|++||.+||+||++|+.+.+.|...++.+
T Consensus 8 ~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~-sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L 71 (88)
T 1nkp_A 8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKA-PKVVILKKATAYILSVQAEEQKLISEEDLL 71 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3799999999999999999999999976 364 999999999999999999999988776543
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.32 E-value=5.9e-13 Score=107.45 Aligned_cols=56 Identities=29% Similarity=0.379 Sum_probs=48.4
Q ss_pred CccchhHHHHHHHHHHHHHHHhccCCCC---CcCCChhhhHHHHHHHHHHHHHHHHHHH
Q 014374 268 NSHSLAERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQQVEFLS 323 (426)
Q Consensus 268 ~~HslaERrRRekINer~~~LrsLVP~~---~K~tdKAsIL~eAIdYIK~LQ~QVq~Le 323 (426)
..|+..||+||..||++|..|+.+||.+ .|...|+.||..||+||++||+++++++
T Consensus 7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4799999999999999999999999953 3432688999999999999999999875
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.25 E-value=9.5e-12 Score=101.07 Aligned_cols=60 Identities=17% Similarity=0.219 Sum_probs=54.5
Q ss_pred ccchhHHHHHHHHHHHHHHHhccCCCC---CcCCChhhhHHHHHHHHHHHHHHHHHHHHhHhhc
Q 014374 269 SHSLAERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQQVEFLSMKLATV 329 (426)
Q Consensus 269 ~HslaERrRRekINer~~~LrsLVP~~---~K~tdKAsIL~eAIdYIK~LQ~QVq~Le~~l~~~ 329 (426)
.|+..||+||..||+.|..|+++||.+ .|. .|+.||.+||+||+.|+.+.+.|..+.+.+
T Consensus 4 ~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~-sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L 66 (80)
T 1nlw_A 4 THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRH-TTLSLLTKAKLHIKKLEDSDRKAVHQIDQL 66 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCC-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999965 454 899999999999999999999998877654
No 12
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=99.10 E-value=8.6e-11 Score=96.68 Aligned_cols=72 Identities=25% Similarity=0.389 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhccCCCCCcC---CChhhhHHHHHHHHHHHHHHHHHHH------HhHhhcCCcccccHHHhhhHHHHh
Q 014374 277 RREKISERMRLLQELVPGCNKI---TGKAVMLDEIINYVQSLQQQVEFLS------MKLATVNPELNLDIERILSKDILH 347 (426)
Q Consensus 277 RRekINer~~~LrsLVP~~~K~---tdKAsIL~eAIdYIK~LQ~QVq~Le------~~l~~~~p~~~~~~~~l~~~~~~~ 347 (426)
-|..||++|++|..|||.+... .+|++||..||+||++||++++.+. .+++..+..+...+++|+.++..|
T Consensus 3 ~R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r~k~le~~n~~l~~riqELE~qa~~h 82 (83)
T 4ath_A 3 MRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQELEMQARAH 82 (83)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHc
Confidence 4899999999999999987431 3899999999999999998777666 344556667888999999999888
Q ss_pred h
Q 014374 348 A 348 (426)
Q Consensus 348 ~ 348 (426)
+
T Consensus 83 g 83 (83)
T 4ath_A 83 G 83 (83)
T ss_dssp -
T ss_pred C
Confidence 5
No 13
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.92 E-value=8e-10 Score=108.07 Aligned_cols=54 Identities=20% Similarity=0.451 Sum_probs=41.7
Q ss_pred CcCCccchhHHHHHHHHHHHHHHHhccCCC-CCcCCChhhhHHHHHHHHHHHHHHH
Q 014374 265 QATNSHSLAERVRREKISERMRLLQELVPG-CNKITGKAVMLDEIINYVQSLQQQV 319 (426)
Q Consensus 265 ~a~~~HslaERrRRekINer~~~LrsLVP~-~~K~tdKAsIL~eAIdYIK~LQ~QV 319 (426)
.++.+|+++||+||++||+.|.+|+.|||. ..|+ ||++||..||+|||.|+...
T Consensus 11 ~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~-dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 11 AKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKM-DKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCCSSSCCC-CHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCc-CHHHHHHHHHHHHHHHHhhc
Confidence 344589999999999999999999999994 4565 99999999999999998643
No 14
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.90 E-value=3.7e-10 Score=89.47 Aligned_cols=51 Identities=24% Similarity=0.389 Sum_probs=46.0
Q ss_pred ccchhHHHHHHHHHHHHHHHhccCCCC--CcCCChhhhHHHHHHHHHHHHHHHH
Q 014374 269 SHSLAERVRREKISERMRLLQELVPGC--NKITGKAVMLDEIINYVQSLQQQVE 320 (426)
Q Consensus 269 ~HslaERrRRekINer~~~LrsLVP~~--~K~tdKAsIL~eAIdYIK~LQ~QVq 320 (426)
.|+..||+|+..||+.|..|+.+||.. .| .+|+.||..||+||+.||+.++
T Consensus 15 ~aN~rER~R~~~iN~af~~LR~~iP~~~~~K-lSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 15 AATMRERRRLSKVNEAFETLKRSTSSNPNQR-LPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCSCTTSC-CCHHHHHHHHHHHHHHHHHTTC
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhcCCCCCCC-CCHHHHHHHHHHHHHHHHHHHc
Confidence 699999999999999999999999964 45 4899999999999999998653
No 15
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.82 E-value=3.7e-09 Score=81.75 Aligned_cols=52 Identities=21% Similarity=0.277 Sum_probs=46.0
Q ss_pred ccchhHHHHHHHHHHHHHHHhccCCCCC--cCCChhhhHHHHHHHHHHHHHHHH
Q 014374 269 SHSLAERVRREKISERMRLLQELVPGCN--KITGKAVMLDEIINYVQSLQQQVE 320 (426)
Q Consensus 269 ~HslaERrRRekINer~~~LrsLVP~~~--K~tdKAsIL~eAIdYIK~LQ~QVq 320 (426)
.|+..||+|+..||+.|..|+.+||... ++..|..+|..||+||+.||..++
T Consensus 5 ~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 5 KANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 5889999999999999999999999653 334899999999999999998764
No 16
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.82 E-value=1.2e-09 Score=108.24 Aligned_cols=54 Identities=28% Similarity=0.409 Sum_probs=47.8
Q ss_pred CCcCCccchhHHHHHHHHHHHHHHHhccCC----CCCcCCChhhhHHHHHHHHHHHHHH
Q 014374 264 GQATNSHSLAERVRREKISERMRLLQELVP----GCNKITGKAVMLDEIINYVQSLQQQ 318 (426)
Q Consensus 264 ~~a~~~HslaERrRRekINer~~~LrsLVP----~~~K~tdKAsIL~eAIdYIK~LQ~Q 318 (426)
++++++|+.+||+||+|||+.|.+|+.||| ...|+ ||++||..||+|||.|+..
T Consensus 11 ~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~-dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 11 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCC-CHHHHHHHHHHHHHHHHCC
T ss_pred hhhcccccchhhcchHHHHHHHHHHHHhcCCCCcccccc-CHHHHHHHHHHHHHHhhcc
Confidence 344568999999999999999999999999 45676 9999999999999999843
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.29 E-value=2.3e-07 Score=73.87 Aligned_cols=45 Identities=24% Similarity=0.438 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHHHHHHhccCCCC---CcCCChhhhHHHHHHHHHHHHH
Q 014374 272 LAERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQ 317 (426)
Q Consensus 272 laERrRRekINer~~~LrsLVP~~---~K~tdKAsIL~eAIdYIK~LQ~ 317 (426)
..||+|+..||+.|..||.+||.. .|+ .|..+|..||+||..||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKL-SKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQL-SQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCC-CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCc-cHHHHHHHHHHHHHHHHc
Confidence 459999999999999999999965 354 899999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.56 E-value=0.00012 Score=61.81 Aligned_cols=49 Identities=27% Similarity=0.358 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHhccCCCC--CcCCChhhhHHHHHHHHHHHHHHHHHH
Q 014374 274 ERVRREKISERMRLLQELVPGC--NKITGKAVMLDEIINYVQSLQQQVEFL 322 (426)
Q Consensus 274 ERrRRekINer~~~LrsLVP~~--~K~tdKAsIL~eAIdYIK~LQ~QVq~L 322 (426)
||.|=..||+-|..||.+||.. +++..|.-+|.-||+||+.|+..++.-
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~ 83 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSH 83 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 5778888999999999999964 333489999999999999999877653
No 19
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=47.85 E-value=13 Score=28.32 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcCCChhhhHHHHHHHHHHHHHHHHHHHHhHhhcCCcc
Q 014374 274 ERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPEL 333 (426)
Q Consensus 274 ERrRRekINer~~~LrsLVP~~~K~tdKAsIL~eAIdYIK~LQ~QVq~Le~~l~~~~p~~ 333 (426)
||++|.+...++.+.+. .. .-.+|+..|+.+|+.|+.+...+..++
T Consensus 1 Ekr~rrrerNR~AA~rc-----R~---------rKk~~~~~Le~~v~~L~~~n~~L~~ei 46 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC-----RN---------RRRELTDTLQAETDQLEDEKSALQTEI 46 (63)
T ss_dssp CHHHHHHHHHHHHHHHH-----HH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH-----HH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777788777764 21 123788888888888887776655443
No 20
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=37.90 E-value=22 Score=26.52 Aligned_cols=21 Identities=10% Similarity=0.235 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHhHhhcC
Q 014374 310 NYVQSLQQQVEFLSMKLATVN 330 (426)
Q Consensus 310 dYIK~LQ~QVq~Le~~l~~~~ 330 (426)
.||..|+.+|+.|+..+..+.
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999888654
No 21
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=36.83 E-value=16 Score=27.03 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHhHhhcC
Q 014374 310 NYVQSLQQQVEFLSMKLATVN 330 (426)
Q Consensus 310 dYIK~LQ~QVq~Le~~l~~~~ 330 (426)
.||..|+.+++.|+..++.+.
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~ 64 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLK 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888887776653
No 22
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=33.05 E-value=45 Score=29.66 Aligned_cols=35 Identities=26% Similarity=0.475 Sum_probs=29.1
Q ss_pred HHHHHHHHHhccCCCC----CcCCChhhhHHHHHHHHHHH
Q 014374 280 KISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSL 315 (426)
Q Consensus 280 kINer~~~LrsLVP~~----~K~tdKAsIL~eAIdYIK~L 315 (426)
-|...|..|+.+||.- .++ -|-.||..|-|++..|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~l-pk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERL-PKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSC-CHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhh-hHHHHHHHHHHHHHHH
Confidence 4789999999999953 343 7999999999998876
No 23
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=32.86 E-value=33 Score=26.29 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHhHhhcCCcccc
Q 014374 310 NYVQSLQQQVEFLSMKLATVNPELNL 335 (426)
Q Consensus 310 dYIK~LQ~QVq~Le~~l~~~~p~~~~ 335 (426)
.||..|+.+|+.|+..+..+.+...+
T Consensus 45 ~~~~~L~~r~~~le~~l~~l~~~~~l 70 (89)
T 3coq_A 45 AHLTEVESRLERLEQLFLLIFPREDL 70 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCchhh
Confidence 69999999999999999998876544
No 24
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=29.92 E-value=48 Score=27.04 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcCC
Q 014374 305 LDEIINYVQSLQQQVEFLSMKLATVNP 331 (426)
Q Consensus 305 L~eAIdYIK~LQ~QVq~Le~~l~~~~p 331 (426)
++.||+-|.-||.+|++|..+...+..
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~~ 41 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQ 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999988877654
No 25
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=28.46 E-value=59 Score=24.27 Aligned_cols=29 Identities=10% Similarity=0.137 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHhhcCC
Q 014374 303 VMLDEIINYVQSLQQQVEFLSMKLATVNP 331 (426)
Q Consensus 303 sIL~eAIdYIK~LQ~QVq~Le~~l~~~~p 331 (426)
..|++.++-+..|.++++.|+.+++.++.
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999999887754
No 26
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=25.91 E-value=56 Score=25.46 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHhHhhcCC
Q 014374 310 NYVQSLQQQVEFLSMKLATVNP 331 (426)
Q Consensus 310 dYIK~LQ~QVq~Le~~l~~~~p 331 (426)
.||+.|+.+|+.|+..+..+..
T Consensus 48 ~~~~~Le~rl~~le~~l~~~~~ 69 (96)
T 1pyi_A 48 SYVFFLEDRLAVMMRVLKEYGV 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 5999999999999988876543
No 27
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=25.26 E-value=34 Score=25.90 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHhHhhcC
Q 014374 309 INYVQSLQQQVEFLSMKLATVN 330 (426)
Q Consensus 309 IdYIK~LQ~QVq~Le~~l~~~~ 330 (426)
-.||..|+.+|+.||..+..+.
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3799999999999998776653
No 28
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=22.43 E-value=61 Score=24.07 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHhHhhcC
Q 014374 310 NYVQSLQQQVEFLSMKLATVN 330 (426)
Q Consensus 310 dYIK~LQ~QVq~Le~~l~~~~ 330 (426)
.||..|+.+|..|+.+...+.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~ 42 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLI 42 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 788999999988887766543
Done!