BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014375
         (426 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
           Complex With Stem Cell Factor (Scf)
 pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
           Complex With Stem Cell Factor (Scf)
          Length = 489

 Score = 30.4 bits (67), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 63/147 (42%), Gaps = 35/147 (23%)

Query: 248 DQNIPSVKELHQAGVKFKPAAESTKNLLDINFNQGILEIPFFKVYDDTERAYRNLLAFER 307
           + NI  V ELH   +K       T  + + + N  I     F VY +T+     +L ++R
Sbjct: 343 ESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIA----FNVYVNTKP---EILTYDR 395

Query: 308 MHDYNGYFNDYIIMMACLIS-----------CPKDEELLVQN----DVIRLGNDGNIATV 352
           +   NG       M+ C+ +           CP  E+    +    DV  L + G     
Sbjct: 396 L--VNG-------MLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSG---PP 443

Query: 353 FGNLVRGSALDSDDFQYSGVVTDLQAY 379
           FG LV  S++DS  F+++G V + +AY
Sbjct: 444 FGKLVVQSSIDSSAFKHNGTV-ECKAY 469


>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
           Receptor Tyrosine Kinase, Kit
          Length = 524

 Score = 30.0 bits (66), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 63/147 (42%), Gaps = 35/147 (23%)

Query: 248 DQNIPSVKELHQAGVKFKPAAESTKNLLDINFNQGILEIPFFKVYDDTERAYRNLLAFER 307
           + NI  V ELH   +K       T  + + + N  I     F VY +T+     +L ++R
Sbjct: 368 ESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIA----FNVYVNTKP---EILTYDR 420

Query: 308 MHDYNGYFNDYIIMMACLIS-----------CPKDEELLVQN----DVIRLGNDGNIATV 352
           +   NG       M+ C+ +           CP  E+    +    DV  L + G     
Sbjct: 421 L--VNG-------MLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSG---PP 468

Query: 353 FGNLVRGSALDSDDFQYSGVVTDLQAY 379
           FG LV  S++DS  F+++G V + +AY
Sbjct: 469 FGKLVVQSSIDSSAFKHNGTV-ECKAY 494


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.139    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,181,087
Number of Sequences: 62578
Number of extensions: 509096
Number of successful extensions: 913
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 913
Number of HSP's gapped (non-prelim): 2
length of query: 426
length of database: 14,973,337
effective HSP length: 102
effective length of query: 324
effective length of database: 8,590,381
effective search space: 2783283444
effective search space used: 2783283444
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)