BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014375
         (426 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9SD53|Y3720_ARATH UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1
           SV=1
          Length = 476

 Score =  159 bits (403), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 120/428 (28%), Positives = 201/428 (46%), Gaps = 46/428 (10%)

Query: 30  KDCSIYRVAEPTRCLNPSHFTPQMVSIGPFHHGKEELKPMEEHKQRYLKYFLQRTK---V 86
           + C I+RV E    LNP  + P++VSIGP+H+G++ L+ +++HK R L+ FL   K   V
Sbjct: 44  ESCCIFRVPESFVALNPKAYKPKVVSIGPYHYGEKHLQMIQQHKPRLLQLFLDEAKKKDV 103

Query: 87  RMARFLSFIKERETKLRNCYAETIRNLGSDEFVAMVLVDAVFLIEFFLRYYKRNLRTDDD 146
                +  + + E K+R  Y+E ++  G D    MVL D  F++  FL     N+   +D
Sbjct: 104 EENVLVKAVVDLEDKIRKSYSEELKT-GHDLMFMMVL-DGCFILMVFL-IMSGNIELSED 160

Query: 147 RIFKKPKLYLEIQDDFLLVENQLPLFILNDLFDLAKTATYEDAFYENISLAEIACFWFEN 206
            IF  P L   IQ D LL+ENQ+P F+L  L+  +K     D       L  IA  +F+N
Sbjct: 161 PIFSIPWLLSSIQSDLLLLENQVPFFVLQTLYVGSKIGVSSD-------LNRIAFHFFKN 213

Query: 207 YVIEPLDKNPV---KIHFPNAEHFLHLILLCLQPSQSRA--------QIML---KDQNIP 252
               P+DK      K     A+H L LI     P+ S +        Q+ L   K  N+P
Sbjct: 214 ----PIDKEGSYWEKHRNYKAKHLLDLIRETFLPNTSESDKASSPHVQVQLHEGKSGNVP 269

Query: 253 SV-----------KELHQAGVKFKPAAESTKNLLDINFNQGILEIPFFKVYDDTERAYRN 301
           SV           K L   G+KF+       ++L++   +  L+IP  +        + N
Sbjct: 270 SVDSKAVPLILSAKRLRLQGIKFRLRRSKEDSILNVRLKKNKLQIPQLRFDGFISSFFLN 329

Query: 302 LLAFERMH-DYNGYFNDYIIMMACLISCPKDEELLVQNDVI---RLGNDGNIATVFGNLV 357
            +AFE+ + D +     YI+ M CL++  +D   L  + +I     G++  ++  F  + 
Sbjct: 330 CVAFEQFYTDSSNEITTYIVFMGCLLNNEEDVTFLRNDKLIIENHFGSNNEVSEFFKTIS 389

Query: 358 RGSALDSDDFQYSGVVTDLQAYRKLPWHKWKAALKQNYFNTPWASISVIAAVILLLLTAT 417
           +    + D    + V   +  Y K  ++   A  +  +F +PW  +S  A + ++LLT  
Sbjct: 390 KDVVFEVDTSYLNNVFKGVNEYTKKWYNGLWAGFRHTHFESPWTFLSSCAVLFVILLTML 449

Query: 418 QTVSSLIA 425
           Q+  ++++
Sbjct: 450 QSTVAILS 457


>sp|P0C897|Y3264_ARATH Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana
           GN=At3g02645 PE=3 SV=1
          Length = 529

 Score = 80.1 bits (196), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 95/209 (45%), Gaps = 12/209 (5%)

Query: 32  CSIYRVAEPTRCLNPSHFTPQMVSIGPFHHGKEELKPMEEHKQRYLKYFL-QRTKVRMAR 90
            SI+ V +   C +P  +TP  VSIGP+H  K EL  ME +K    +    Q    R   
Sbjct: 43  VSIFNVPKALMCSHPDSYTPHRVSIGPYHCLKPELHEMERYKLMIARKIRNQYNSFRFHD 102

Query: 91  FLSFIKERETKLRNCYAETIRNLGSDEFVAMVLVDAVFLIEFFLRYYKRNLRTDDDRIFK 150
            +  ++  E K+R CY + I     +  + ++ VD+ FLIEF   Y  R + T  +R+  
Sbjct: 103 LVEKLQSMEIKIRACYHKYI-GFNGETLLWIMAVDSSFLIEFLKIYSFRKVETLINRVGH 161

Query: 151 KPKLYLEIQDDFLLVENQLPLFILNDL--FDLAKTATYEDAFYENISLAEIACFWFENYV 208
                 EI  D +++ENQ+PLF+L     F L  T + +D     +S+    C      V
Sbjct: 162 N-----EILRDIMMIENQIPLFVLRKTLEFQLESTESADDLL---LSVLTGLCKDLSPLV 213

Query: 209 IEPLDKNPVKIHFPNAEHFLHLILLCLQP 237
           I+  D   +K  F    H L  +   + P
Sbjct: 214 IKFDDDQILKAQFQECNHILDFLYQMIVP 242



 Score = 60.8 bits (146), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 4/159 (2%)

Query: 245 MLKDQNIPSVKELHQAGVKFKPAAESTKNLLDINFNQGILEIPFFKVYDDTERAYRNLLA 304
           ++++  IPSV +LH+AGV+FKP A    + +  + N G   +P   +  +TE   RNL+A
Sbjct: 339 LVEELTIPSVSDLHKAGVRFKPTAHGNISTVTFDSNSGQFYLPVINLDINTETVLRNLVA 398

Query: 305 FERMHDYNG-YFNDYIIMMACLISCPKDEELLVQNDVI--RLGNDGNIATVFGNLVRGSA 361
           +E  +      F  Y  ++  +I   +D  LL +  V+  RL +D   A ++  + +   
Sbjct: 399 YEATNTSGPLVFTRYTELINGIIDSEEDVRLLREQGVLVSRLKSDQEAAEMWNGMSKSVR 458

Query: 362 LDSDDFQYSGVVTDLQAYRKLPWHKWKAALKQNYFNTPW 400
           L    F     + D+  Y    W      L + Y    W
Sbjct: 459 LTKVGF-LDKTIEDVNRYYTGRWKVKIGRLVEVYVYGSW 496


>sp|Q485H4|GLND_COLP3 [Protein-PII] uridylyltransferase OS=Colwellia psychrerythraea
           (strain 34H / ATCC BAA-681) GN=glnD PE=3 SV=1
          Length = 878

 Score = 36.2 bits (82), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 345 NDGNIATVFGNLVRGSALDSDDFQYSGVVTDLQAYRKLPWHKWKA-ALKQNYFNT 398
           ND N+   FG +VR  A    ++ Y   V D++   +  W+ WKA  L++ YFNT
Sbjct: 561 NDENVIRTFGEIVRDEA--HLNYLYCLTVADMRGTNESLWNNWKANLLEELYFNT 613


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.139    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 153,823,833
Number of Sequences: 539616
Number of extensions: 6601034
Number of successful extensions: 13947
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 13937
Number of HSP's gapped (non-prelim): 5
length of query: 426
length of database: 191,569,459
effective HSP length: 120
effective length of query: 306
effective length of database: 126,815,539
effective search space: 38805554934
effective search space used: 38805554934
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)