Query 014375
Match_columns 426
No_of_seqs 156 out of 672
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 04:31:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014375.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014375hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03140 DUF247: Plant protein 100.0 1E-108 2E-113 842.7 33.8 372 34-415 1-391 (391)
2 PRK10404 hypothetical protein; 66.9 5.6 0.00012 33.1 2.9 19 398-417 79-97 (101)
3 PRK10132 hypothetical protein; 61.0 8.3 0.00018 32.5 2.9 24 393-417 79-103 (108)
4 PF07438 DUF1514: Protein of u 59.9 10 0.00022 28.7 2.8 22 400-421 2-23 (66)
5 PF12911 OppC_N: N-terminal TM 59.3 12 0.00026 27.0 3.2 32 392-423 9-40 (56)
6 PF14770 TMEM18: Transmembrane 56.6 11 0.00024 32.5 3.0 48 373-423 55-102 (123)
7 PHA02103 hypothetical protein 49.1 36 0.00079 28.5 4.7 78 262-342 6-102 (135)
8 PF09069 EF-hand_3: EF-hand; 46.3 64 0.0014 26.2 5.7 54 72-125 3-76 (90)
9 PF11293 DUF3094: Protein of u 44.2 51 0.0011 24.2 4.2 35 374-413 10-44 (55)
10 PF14579 HHH_6: Helix-hairpin- 41.1 1.2E+02 0.0025 24.3 6.6 81 261-346 1-85 (90)
11 COG4575 ElaB Uncharacterized c 39.2 30 0.00065 28.9 2.8 24 393-417 76-100 (104)
12 smart00413 ETS erythroblast tr 37.7 53 0.0012 26.6 3.9 43 337-384 27-69 (87)
13 cd00948 FBP_aldolase_I_a Fruct 37.6 50 0.0011 33.1 4.6 82 332-418 82-166 (330)
14 PF05421 DUF751: Protein of un 37.2 56 0.0012 24.6 3.7 31 394-424 29-59 (61)
15 PF04971 Lysis_S: Lysis protei 36.4 55 0.0012 25.2 3.6 33 386-418 19-51 (68)
16 PF15103 G0-G1_switch_2: G0/G1 36.0 37 0.00079 28.2 2.8 24 402-425 28-51 (102)
17 PHA02680 ORF090 IMV phosphoryl 32.2 67 0.0014 25.9 3.6 28 398-425 43-70 (91)
18 KOG3110 Riboflavin kinase [Coe 31.1 40 0.00086 29.5 2.3 59 49-107 65-138 (153)
19 KOG4134 DNA-dependent RNA poly 28.3 37 0.00079 32.3 1.8 34 28-72 21-54 (253)
20 PF10961 DUF2763: Protein of u 27.7 78 0.0017 25.8 3.4 26 398-423 14-42 (91)
21 PF00178 Ets: Ets-domain; Int 26.8 1.1E+02 0.0023 24.6 4.1 42 337-383 27-68 (85)
22 PF08181 DegQ: DegQ (SacQ) fam 26.3 2.2E+02 0.0048 19.6 4.8 30 69-98 1-30 (46)
23 cd00344 FBP_aldolase_I Fructos 24.6 1E+02 0.0022 31.1 4.3 81 332-418 83-167 (328)
24 PF04531 Phage_holin_1: Bacter 23.9 71 0.0015 25.5 2.5 23 396-418 8-30 (84)
25 PF11446 DUF2897: Protein of u 23.8 93 0.002 22.9 2.9 21 398-418 4-24 (55)
26 PF05957 DUF883: Bacterial pro 23.8 82 0.0018 25.4 2.9 20 397-417 71-90 (94)
27 PF09820 AAA-ATPase_like: Pred 22.6 80 0.0017 31.0 3.2 57 345-406 226-282 (284)
28 PTZ00019 fructose-bisphosphate 22.5 1.5E+02 0.0033 30.1 5.1 82 332-418 85-171 (355)
29 PF05391 Lsm_interact: Lsm int 22.4 57 0.0012 19.2 1.2 12 112-123 9-20 (21)
30 cd00925 Cyt_c_Oxidase_VIa Cyto 21.9 90 0.002 25.2 2.7 25 398-422 14-38 (86)
31 PF05767 Pox_A14: Poxvirus vir 21.6 1.2E+02 0.0027 24.6 3.4 27 398-424 42-68 (92)
32 PF00690 Cation_ATPase_N: Cati 21.5 2.1E+02 0.0045 21.3 4.7 57 345-410 5-68 (69)
No 1
>PF03140 DUF247: Plant protein of unknown function; InterPro: IPR004158 The function of the plant proteins constituting this family is unknown.
Probab=100.00 E-value=1e-108 Score=842.72 Aligned_cols=372 Identities=44% Similarity=0.748 Sum_probs=333.5
Q ss_pred eeecCCccccCCCCCCccceeeeccccCCCCcccchHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHhhhhhhh
Q 014375 34 IYRVAEPTRCLNPSHFTPQMVSIGPFHHGKEELKPMEEHKQRYLKYFLQRTK---VRMARFLSFIKERETKLRNCYAETI 110 (426)
Q Consensus 34 I~rVP~~lr~~n~~aY~P~~VSIGPyHhg~~~L~~mE~~K~~~~~~~l~r~~---~~l~~~~~~i~~~e~~~R~cY~e~~ 110 (426)
|||||+++|++|+++|+|++|||||||||+++|+.||++||+|++.|++|++ .++++++++|+++|++||+||++++
T Consensus 1 I~rVP~~lr~~~~~~Y~P~~VsIGPyH~g~~~L~~mE~~K~~~l~~~l~~~~~~~~~l~~~~~~i~~~e~~~R~~Y~~~~ 80 (391)
T PF03140_consen 1 IYRVPESLRDVNPKAYTPQVVSIGPYHHGKPDLQEMEEHKLRYLHRFLKRSGAPAESLEDYVEAIRSLEEEARACYAEDI 80 (391)
T ss_pred CcCCCHHHccCCchhcCCceEEeCCCCCCchhhhhhHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHhcccc
Confidence 8999999999999999999999999999999999999999999999999998 7999999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCc-ccCcccchhhhhhhhhhhccCchHHHHHHHHHhhhccccccc
Q 014375 111 RNLGSDEFVAMVLVDAVFLIEFFLRYYKRNLRTDDDR-IFKKPKLYLEIQDDFLLVENQLPLFILNDLFDLAKTATYEDA 189 (426)
Q Consensus 111 ~~~~~~eF~~MmllDgcFlLe~~~~~~~~~~~~~~d~-~~~~~~~~~~i~~DllLLENQiPffVL~~L~~~~~~~~~~~~ 189 (426)
.++++++|++||++|||||||+|+++.. ..+.+|| ++..+|+...|++||+|||||||||||++||++...+.
T Consensus 81 ~~~~~~~f~~MmllDgCFlLe~~~~~~~--~~~~~d~~~~~~~~~~~~i~~Dl~LLENQIPffVL~~L~~l~~~~~---- 154 (391)
T PF03140_consen 81 DDMSSDEFVEMMLLDGCFLLEFFLRYSR--SDGENDPGIFSRPWLLSAIRRDLLLLENQIPFFVLEKLFELLFGSK---- 154 (391)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhhh--ccccccccccccccccccchhheeeecccchHHHHHHHHHHhcccc----
Confidence 4599999999999999999999998876 2345788 88899999999999999999999999999999998332
Q ss_pred cccchhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCchHHHHHHhhCCCC--C-ccc--cc------cCCccccCHHHHH
Q 014375 190 FYENISLAEIACFWFENYVIEPLDKNPVKIHFPNAEHFLHLILLCLQPSQ--S-RAQ--IM------LKDQNIPSVKELH 258 (426)
Q Consensus 190 ~~~~~~l~~l~~~ff~~~~~~~~~~~~~~~~~~~~~HlLdL~~~~~~p~~--~-~~~--~~------~~~~~~~sAteL~ 258 (426)
.....++.+++.+||........ ........+++|||||+|.+++|+. . ..+ +. .....|||||||+
T Consensus 155 ~~~~~~l~~l~~~~~~~~~~~~~--~~~~~~~~~~~HlL~L~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~sA~eL~ 232 (391)
T PF03140_consen 155 SDVDESLIDLVLKFFYKHWPSWP--PDEPISNPEPHHLLDLLRMSLLPSPPSSSPTPPRPPRSNGEKPPPKRIRSATELR 232 (391)
T ss_pred cCccchHHHHHHhHhcccccccc--ccccccCCCCCChHHHHHHHhccccCCcccCCCCcccccccccccccCCCHHHHH
Confidence 24457899999999942111000 0112455678999999999999932 1 111 11 1246799999999
Q ss_pred hcCcEEeeCcCCCC-CccceEEcCceEEeceeEeeCchhHHHHhHHHHHHhcCC-CCchhhHHHHHhhhcCChhhHHHHH
Q 014375 259 QAGVKFKPAAESTK-NLLDINFNQGILEIPFFKVYDDTERAYRNLLAFERMHDY-NGYFNDYIIMMACLISCPKDEELLV 336 (426)
Q Consensus 259 ~aGVkfk~~~~~~~-~llDI~F~~G~L~IP~l~id~~T~~llrNLiA~Eq~~~~-~~~vtsY~~fM~~LI~t~~DV~lL~ 336 (426)
+|||+||+ +++. +++||+|++|+|+||+|.||++|+++||||||||||++. +.+||||+.||++||+|++||++|+
T Consensus 233 ~aGV~fk~--~~~~~~~lDv~F~~G~L~IP~L~id~~T~~~lrNLiA~Eq~~~~~~~~vtsY~~fm~~Li~t~~DV~lL~ 310 (391)
T PF03140_consen 233 EAGVKFKP--SETDRSLLDVKFKKGVLEIPPLYIDDNTESLLRNLIAFEQCHPPTGSYVTSYVFFMDSLINTPEDVELLR 310 (391)
T ss_pred hCCcEEee--ccCccccccceecCCEEEeCeEEECCcchHHHhHHHHHHHHhccCCchHhHHHHHHHHHhCcHhhHHHHH
Confidence 99999999 5655 699999999999999999999999999999999999988 8999999999999999999999999
Q ss_pred HCCeee--eCCchHHHHHHHHhccCCccCCCCcchHHHHHHHHhhhcCchHHhHhhhcccccccchHHHHHHHHHHHHHH
Q 014375 337 QNDVIR--LGNDGNIATVFGNLVRGSALDSDDFQYSGVVTDLQAYRKLPWHKWKAALKQNYFNTPWASISVIAAVILLLL 414 (426)
Q Consensus 337 ~~GIi~--lgsdeeva~lFn~L~~~~~~~~~~~~~~~v~~~ln~~~~~r~~~w~a~l~~~yf~npW~~is~~aA~~ll~l 414 (426)
++|||+ +|||+||++|||+||++++.+.+++||.+++++||+||++||++|+|+++|+||+|||+++|++||+++|++
T Consensus 311 ~kgIi~~~l~~d~eva~~F~~L~~~v~~~~~~~~~~~v~~~l~~~~~~~~~~~~a~l~~~yf~~pw~~is~~aa~~ll~l 390 (391)
T PF03140_consen 311 RKGIIVNWLGSDEEVAKLFNGLCKGVVFDVDDSYYSDVCEDLNKYYQSRWNRWWAWLRRKYFSNPWTFISLVAAIILLLL 390 (391)
T ss_pred hCCeEecCCCCcHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHhhhhcCCcHHHHHHHHHHHHHHh
Confidence 999999 999999999999999999988778999999999999999999999999999999999999999999999999
Q ss_pred H
Q 014375 415 T 415 (426)
Q Consensus 415 t 415 (426)
|
T Consensus 391 T 391 (391)
T PF03140_consen 391 T 391 (391)
T ss_pred C
Confidence 7
No 2
>PRK10404 hypothetical protein; Provisional
Probab=66.92 E-value=5.6 Score=33.09 Aligned_cols=19 Identities=37% Similarity=0.576 Sum_probs=14.7
Q ss_pred cchHHHHHHHHHHHHHHHHH
Q 014375 398 TPWASISVIAAVILLLLTAT 417 (426)
Q Consensus 398 npW~~is~~aA~~ll~lt~~ 417 (426)
|||..+++.| .++|++.++
T Consensus 79 ~Pw~avGiaa-gvGlllG~L 97 (101)
T PRK10404 79 KPWQGIGVGA-AVGLVLGLL 97 (101)
T ss_pred CcHHHHHHHH-HHHHHHHHH
Confidence 8999999655 577777765
No 3
>PRK10132 hypothetical protein; Provisional
Probab=60.97 E-value=8.3 Score=32.48 Aligned_cols=24 Identities=21% Similarity=0.594 Sum_probs=16.5
Q ss_pred ccccc-cchHHHHHHHHHHHHHHHHH
Q 014375 393 QNYFN-TPWASISVIAAVILLLLTAT 417 (426)
Q Consensus 393 ~~yf~-npW~~is~~aA~~ll~lt~~ 417 (426)
.+|.. |||..+++.| .++++++++
T Consensus 79 ~~~V~~~Pw~svgiaa-gvG~llG~L 103 (108)
T PRK10132 79 DTFVRERPWCSVGTAA-AVGIFIGAL 103 (108)
T ss_pred HHHHHhCcHHHHHHHH-HHHHHHHHH
Confidence 44444 8999999655 477777665
No 4
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=59.91 E-value=10 Score=28.72 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 014375 400 WASISVIAAVILLLLTATQTVS 421 (426)
Q Consensus 400 W~~is~~aA~~ll~lt~~QTv~ 421 (426)
|.++|.+.|+++|++-.+|+-.
T Consensus 2 WIiiSIvLai~lLI~l~~ns~l 23 (66)
T PF07438_consen 2 WIIISIVLAIALLISLSVNSEL 23 (66)
T ss_pred hhhHHHHHHHHHHHHHhhhHHH
Confidence 8999999999999998888753
No 5
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=59.27 E-value=12 Score=26.96 Aligned_cols=32 Identities=25% Similarity=0.258 Sum_probs=26.0
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHhhhh
Q 014375 392 KQNYFNTPWASISVIAAVILLLLTATQTVSSL 423 (426)
Q Consensus 392 ~~~yf~npW~~is~~aA~~ll~lt~~QTv~sv 423 (426)
.+++++|+..+++++.-+++++++++..+++=
T Consensus 9 ~~~f~~nk~a~~gl~il~~~vl~ai~~p~~~p 40 (56)
T PF12911_consen 9 WRRFRRNKLAVIGLIILLILVLLAIFAPFISP 40 (56)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHHcCC
Confidence 46788899999999988888888888776653
No 6
>PF14770 TMEM18: Transmembrane protein 18
Probab=56.60 E-value=11 Score=32.47 Aligned_cols=48 Identities=31% Similarity=0.419 Sum_probs=36.7
Q ss_pred HHHHHhhhcCchHHhHhhhcccccccchHHHHHHHHHHHHHHHHHHHhhhh
Q 014375 373 VTDLQAYRKLPWHKWKAALKQNYFNTPWASISVIAAVILLLLTATQTVSSL 423 (426)
Q Consensus 373 ~~~ln~~~~~r~~~w~a~l~~~yf~npW~~is~~aA~~ll~lt~~QTv~sv 423 (426)
.+.+|++..+.|+.. -+++||.+-=.+||++-++=+|+.+++..+..+
T Consensus 55 aE~iN~~~a~nW~~F---s~qnYFDs~G~Fisvv~s~PlLl~~~ii~~~~l 102 (123)
T PF14770_consen 55 AEYINEYAARNWRSF---SKQNYFDSSGVFISVVFSAPLLLNCLIILVNWL 102 (123)
T ss_pred HHHHHHHHHHHHHHH---hhccCcCCCCeeehHHHHHhHHHHHHHHHHHHH
Confidence 478999888777433 357999999999999988777777776666544
No 7
>PHA02103 hypothetical protein
Probab=49.11 E-value=36 Score=28.45 Aligned_cols=78 Identities=18% Similarity=0.264 Sum_probs=50.6
Q ss_pred cEEeeC-cCCCCCcc--ceEEc----Cce--EEeceeEeeCchhHHHHhHHHHHHhcCC------C----CchhhHHHHH
Q 014375 262 VKFKPA-AESTKNLL--DINFN----QGI--LEIPFFKVYDDTERAYRNLLAFERMHDY------N----GYFNDYIIMM 322 (426)
Q Consensus 262 Vkfk~~-~~~~~~ll--DI~F~----~G~--L~IP~l~id~~T~~llrNLiA~Eq~~~~------~----~~vtsY~~fM 322 (426)
.||++. ....++.+ .|.|+ +.+ -+||.+..|..+.-+-|=.+-+|.|... + .++-+|-..
T Consensus 6 lkf~~fk~kd~rn~f~v~~~fsdkf~d~t~~~e~pai~~~~~~~ei~rl~~f~~kck~~yp~gkgg~~df~~ipdyyry- 84 (135)
T PHA02103 6 LKFTPFKPKDDRNTFMVKMHFSDKFSDATLEYEIPAIDADRTKAEIVRLITFMDKCKAEYPRGKGGQADFNHIPDYYRY- 84 (135)
T ss_pred eeeeccCCccCcceEEEEEecccccCcceeEEeccccccchhhHHHHHHHHHHHHHHhhCCCCCCCccccccChHHHHH-
Confidence 455442 03344444 34454 344 5899999999999999999999999753 1 234455433
Q ss_pred hhhcCChhhHHHHHHCCeee
Q 014375 323 ACLISCPKDEELLVQNDVIR 342 (426)
Q Consensus 323 ~~LI~t~~DV~lL~~~GIi~ 342 (426)
.-..+|-|++-.+-||=.
T Consensus 85 --f~ee~e~ie~we~ygve~ 102 (135)
T PHA02103 85 --FGEEAEGVELWEEYGVEG 102 (135)
T ss_pred --hcccchhhhHHHHhCcce
Confidence 335667777777777644
No 8
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=46.33 E-value=64 Score=26.24 Aligned_cols=54 Identities=17% Similarity=0.410 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhh-----HHHHHHHHHHH-------------HHHHHHHhhhhhh--hcCCChhHHHHHHHHH
Q 014375 72 HKQRYLKYFLQRTK-----VRMARFLSFIK-------------ERETKLRNCYAET--IRNLGSDEFVAMVLVD 125 (426)
Q Consensus 72 ~K~~~~~~~l~r~~-----~~l~~~~~~i~-------------~~e~~~R~cY~e~--~~~~~~~eF~~MmllD 125 (426)
.|.||+=+++..++ ..++.++..+. ..|..+|+|+... -.+++-++|...|..|
T Consensus 3 dKyRylFslisd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 3 DKYRYLFSLISDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQLSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHHS-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTTT-S-B-HHHHHHHHHT-
T ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccCCCCccCHHHHHHHHHhC
Confidence 58888888886643 23444443332 3688899999872 2378888998777655
No 9
>PF11293 DUF3094: Protein of unknown function (DUF3094); InterPro: IPR021444 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=44.23 E-value=51 Score=24.16 Aligned_cols=35 Identities=20% Similarity=0.485 Sum_probs=27.0
Q ss_pred HHHHhhhcCchHHhHhhhcccccccchHHHHHHHHHHHHH
Q 014375 374 TDLQAYRKLPWHKWKAALKQNYFNTPWASISVIAAVILLL 413 (426)
Q Consensus 374 ~~ln~~~~~r~~~w~a~l~~~yf~npW~~is~~aA~~ll~ 413 (426)
+++++|-++.||. .-|+-|+ ||..+.++.|++..+
T Consensus 10 ~~Vd~yL~a~~~~----VER~PFr-P~~Ll~~li~Vv~gl 44 (55)
T PF11293_consen 10 QRVDEYLQAGVNQ----VERKPFR-PWRLLIVLIVVVIGL 44 (55)
T ss_pred HHHHHHHhCCCCc----cccCCcc-hHHHHHHHHHHHHHH
Confidence 7889999999884 3466775 999988888866543
No 10
>PF14579 HHH_6: Helix-hairpin-helix motif; PDB: 2HPM_A 2HPI_A 3E0D_A 3F2C_A 3F2B_A 3F2D_A 2HQA_A 2HNH_A.
Probab=41.14 E-value=1.2e+02 Score=24.28 Aligned_cols=81 Identities=15% Similarity=0.244 Sum_probs=55.0
Q ss_pred CcEEeeCcCCCCCccceEEcC--ceEEeceeEeeCchhHHHHhHHHHHHhcCCCCchhhHHHHHhhh-cCChhhHHHHHH
Q 014375 261 GVKFKPAAESTKNLLDINFNQ--GILEIPFFKVYDDTERAYRNLLAFERMHDYNGYFNDYIIMMACL-ISCPKDEELLVQ 337 (426)
Q Consensus 261 GVkfk~~~~~~~~llDI~F~~--G~L~IP~l~id~~T~~llrNLiA~Eq~~~~~~~vtsY~~fM~~L-I~t~~DV~lL~~ 337 (426)
||++.+. .=..+-.+-+..+ +.+.+|--.|..-.+.....+++-=+ . ..++|+.-|...+ --+..+++.|.+
T Consensus 1 Gi~v~pp-dIn~S~~~~~~~~~~~~Ir~gl~~Ikglg~~~a~~I~~~R~-~---g~f~s~~df~~R~~~i~~~~le~Li~ 75 (90)
T PF14579_consen 1 GIKVLPP-DINKSDADFTVEDKNNAIRLGLSAIKGLGEEVAEKIVEERE-N---GPFKSLEDFIQRLPKINKRQLEALIK 75 (90)
T ss_dssp T-EEE----TTT-BSS-EEETT-TEEE-BGGGSTTS-HHHHHHHHHHHH-C---SS-SSHHHHHHHS-TS-HHHHHHHHH
T ss_pred CCEEeCC-eecccCCCeEEECCCCEEeehHhhcCCCCHHHHHHHHHhHh-c---CCCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 7788774 1122333545555 79999999999999998888876555 3 4478888888888 777899999999
Q ss_pred CCeee-eCCc
Q 014375 338 NDVIR-LGND 346 (426)
Q Consensus 338 ~GIi~-lgsd 346 (426)
.|.+. ++.+
T Consensus 76 aGafd~~~~~ 85 (90)
T PF14579_consen 76 AGAFDSFGKS 85 (90)
T ss_dssp TTTTTTCSSC
T ss_pred CCCccccChh
Confidence 99999 7763
No 11
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=39.21 E-value=30 Score=28.86 Aligned_cols=24 Identities=38% Similarity=0.720 Sum_probs=15.9
Q ss_pred ccccc-cchHHHHHHHHHHHHHHHHH
Q 014375 393 QNYFN-TPWASISVIAAVILLLLTAT 417 (426)
Q Consensus 393 ~~yf~-npW~~is~~aA~~ll~lt~~ 417 (426)
-+|.. |||..|++-|| ++|++.++
T Consensus 76 D~yV~e~PWq~VGvaAa-VGlllGlL 100 (104)
T COG4575 76 DDYVRENPWQGVGVAAA-VGLLLGLL 100 (104)
T ss_pred HHHHHcCCchHHHHHHH-HHHHHHHH
Confidence 34544 89999997665 55555553
No 12
>smart00413 ETS erythroblast transformation specific domain. variation of the helix-turn-helix motif
Probab=37.66 E-value=53 Score=26.57 Aligned_cols=43 Identities=16% Similarity=0.301 Sum_probs=30.6
Q ss_pred HCCeeeeCCchHHHHHHHHhccCCccCCCCcchHHHHHHHHhhhcCch
Q 014375 337 QNDVIRLGNDGNIATVFGNLVRGSALDSDDFQYSGVVTDLQAYRKLPW 384 (426)
Q Consensus 337 ~~GIi~lgsdeeva~lFn~L~~~~~~~~~~~~~~~v~~~ln~~~~~r~ 384 (426)
++|+..+-+.++||+++-.--..- + --|.++.+.+..||++.-
T Consensus 27 ~~g~Fkl~~~~~vA~lWG~~Knk~----~-M~YeklSRaLRyyy~~~i 69 (87)
T smart00413 27 DGGEFKLVDPEEVARLWGQRKNKP----N-MNYEKLSRALRYYYKKNI 69 (87)
T ss_pred CCCEEEecCHHHHHHHHhhhcCCC----C-CCHHHHHHHHHHHHhcCc
Confidence 355555556689999997553221 2 239999999999998764
No 13
>cd00948 FBP_aldolase_I_a Fructose-1,6-bisphosphate aldolase. The enzyme catalyzes the cleavage of fructose 1,6-bisphosphate to glyceraldehyde 3-phosphate and dihydroxyacetone phosphate (DHAP). This family includes proteins found in vertebrates, plants, and bacterial plant pathogens. Mutations in the aldolase genes in humans cause hemolytic anemia and hereditary fructose intolerance. The enzyme is a member of the class I aldolase family, which utilizes covalent catalysis through a Schiff base formed between a lysine residue of the enzyme and ketose substrates.
Probab=37.65 E-value=50 Score=33.14 Aligned_cols=82 Identities=18% Similarity=0.250 Sum_probs=53.3
Q ss_pred HHHHHHCCeee-eCCchHHHHHHHHhccCCccCCCCcchHHHHHHHHhhhc--CchHHhHhhhcccccccchHHHHHHHH
Q 014375 332 EELLVQNDVIR-LGNDGNIATVFGNLVRGSALDSDDFQYSGVVTDLQAYRK--LPWHKWKAALKQNYFNTPWASISVIAA 408 (426)
Q Consensus 332 V~lL~~~GIi~-lgsdeeva~lFn~L~~~~~~~~~~~~~~~v~~~ln~~~~--~r~~~w~a~l~~~yf~npW~~is~~aA 408 (426)
|++|+++|||. +.=|+-+..+.+. .+-.. ... ++++.+...+||. -|+.+|++.++-.-=.=....|.-.|.
T Consensus 82 ~~~L~~~GIvPgIKVDkGl~~l~g~--~~e~~--t~G-LD~L~~R~~~y~~~GarFAKwRsVi~i~~~~PS~~~I~~na~ 156 (330)
T cd00948 82 VDILKEKGIVPGIKVDKGLVPLAGT--DGETT--TQG-LDGLAERCAKYYKQGARFAKWRAVLKIGNGTPSELAIKENAH 156 (330)
T ss_pred HHHHHHCCCeeeEEeCCCccccCCC--CCCcc--CcC-hHHHHHHHHHHhhcCCcceeeheeeeccCCCCcHHHHHHHHH
Confidence 88999999999 8878777777554 22211 233 8999999999986 456789987754422112344555555
Q ss_pred HHHHHHHHHH
Q 014375 409 VILLLLTATQ 418 (426)
Q Consensus 409 ~~ll~lt~~Q 418 (426)
.+.=...+.|
T Consensus 157 ~LaryA~icq 166 (330)
T cd00948 157 GLARYAAICQ 166 (330)
T ss_pred HHHHHHHHHH
Confidence 5555555555
No 14
>PF05421 DUF751: Protein of unknown function (DUF751); InterPro: IPR008470 This family, Ycf33, contains several plant, cyanobacterial and algal chlorplast encoded proteins of unknown function. The family is exclusively found in phototrophic organisms and may therefore play a role in photosynthesis.
Probab=37.23 E-value=56 Score=24.63 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=26.4
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHhhhhc
Q 014375 394 NYFNTPWASISVIAAVILLLLTATQTVSSLI 424 (426)
Q Consensus 394 ~yf~npW~~is~~aA~~ll~lt~~QTv~sv~ 424 (426)
.-++||-+.++++++.+..+..+.+|+-+++
T Consensus 29 ~llk~p~tai~~i~~~~~~~~~l~~tL~aMl 59 (61)
T PF05421_consen 29 PLLKNPVTAIALIGILIGGFIFLYFTLRAML 59 (61)
T ss_pred HHhcCchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3457899999999999999999999987764
No 15
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=36.38 E-value=55 Score=25.20 Aligned_cols=33 Identities=30% Similarity=0.546 Sum_probs=25.2
Q ss_pred HhHhhhcccccccchHHHHHHHHHHHHHHHHHH
Q 014375 386 KWKAALKQNYFNTPWASISVIAAVILLLLTATQ 418 (426)
Q Consensus 386 ~w~a~l~~~yf~npW~~is~~aA~~ll~lt~~Q 418 (426)
-|...+.-.+-+.-|.+|++++++++-++|.+-
T Consensus 19 ~wl~~lld~~sp~qW~aIGvi~gi~~~~lt~lt 51 (68)
T PF04971_consen 19 YWLLQLLDQFSPSQWAAIGVIGGIFFGLLTYLT 51 (68)
T ss_pred HHHHHHHhccCcccchhHHHHHHHHHHHHHHHh
Confidence 355556566667889999999998888888653
No 16
>PF15103 G0-G1_switch_2: G0/G1 switch protein 2
Probab=35.96 E-value=37 Score=28.17 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcc
Q 014375 402 SISVIAAVILLLLTATQTVSSLIA 425 (426)
Q Consensus 402 ~is~~aA~~ll~lt~~QTv~sv~~ 425 (426)
.++-+.|+++.++++++|+|+-++
T Consensus 28 vLGSvLA~~Gvv~GLVEtVCsPFs 51 (102)
T PF15103_consen 28 VLGSVLAFFGVVIGLVETVCSPFS 51 (102)
T ss_pred hhhhHHHHHHHHHHHHHHHhCccc
Confidence 366677899999999999998664
No 17
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=32.23 E-value=67 Score=25.93 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=19.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhcc
Q 014375 398 TPWASISVIAAVILLLLTATQTVSSLIA 425 (426)
Q Consensus 398 npW~~is~~aA~~ll~lt~~QTv~sv~~ 425 (426)
++|+++|.++-+++.++++-=-+||.+.
T Consensus 43 ~~wRalSii~FIlG~vl~lGilifs~y~ 70 (91)
T PHA02680 43 YVWRALSVTCFIVGAVLLLGLFVFSMYR 70 (91)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4788787777777766666656666654
No 18
>KOG3110 consensus Riboflavin kinase [Coenzyme transport and metabolism]
Probab=31.08 E-value=40 Score=29.54 Aligned_cols=59 Identities=15% Similarity=0.242 Sum_probs=36.9
Q ss_pred Cccceeeec--cccCCCC---cccchHHHHHHHHHHHHHH-------h---hHHHHHHHHHHHHHHHHHHhhhh
Q 014375 49 FTPQMVSIG--PFHHGKE---ELKPMEEHKQRYLKYFLQR-------T---KVRMARFLSFIKERETKLRNCYA 107 (426)
Q Consensus 49 Y~P~~VSIG--PyHhg~~---~L~~mE~~K~~~~~~~l~r-------~---~~~l~~~~~~i~~~e~~~R~cY~ 107 (426)
--|+++||| ||..++. ++..++..|.-+-...++- . =.++++++++|..-.+.|+..-+
T Consensus 65 v~kMvmSIGwNP~Y~N~~Kt~E~hlih~f~~DFYge~l~~~IvGyiRpe~nf~slesLi~~I~~Di~vA~~~l~ 138 (153)
T KOG3110|consen 65 VFKMVMSIGWNPYYKNKKKTMELHLIHDFGEDFYGETLKVIIVGYIRPELNFDSLESLIEAIHGDIEVAKKVLD 138 (153)
T ss_pred ceeEEEEcccCcccCCcccceeeeeehhcccchhhheeeEEEEEeeccccCcchHHHHHHHHHhhHHHHHHhhc
Confidence 458999999 8887754 2333444444333333221 1 13699999999988888887543
No 19
>KOG4134 consensus DNA-dependent RNA polymerase I [Transcription]
Probab=28.32 E-value=37 Score=32.29 Aligned_cols=34 Identities=15% Similarity=0.249 Sum_probs=25.5
Q ss_pred CCCCceeeecCCccccCCCCCCccceeeeccccCCCCcccchHHH
Q 014375 28 LSKDCSIYRVAEPTRCLNPSHFTPQMVSIGPFHHGKEELKPMEEH 72 (426)
Q Consensus 28 ~~~~~~I~rVP~~lr~~n~~aY~P~~VSIGPyHhg~~~L~~mE~~ 72 (426)
.+..-|++++|-.+ .+|+||||-.++.-..||+|
T Consensus 21 nsp~sclv~~t~dl-----------hlalaP~yl~npl~~~i~eh 54 (253)
T KOG4134|consen 21 NSPESCLVCITTDL-----------HLALAPYYLANPLHALIEEH 54 (253)
T ss_pred cCCcceEEEeeehe-----------eeeecchhhcchhHHHHHHH
Confidence 36677999999875 79999999877644345554
No 20
>PF10961 DUF2763: Protein of unknown function (DUF2763); InterPro: IPR024491 This entry represents an eukaryotic family of selenoproteins. It includes SelK, which seems to play an important role in protecting cells from endoplasmic reticulum stress-induced apoptosis [] and SelG, which may be involved in regulating the redox state of the cell [].
Probab=27.68 E-value=78 Score=25.79 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=17.2
Q ss_pred cch---HHHHHHHHHHHHHHHHHHHhhhh
Q 014375 398 TPW---ASISVIAAVILLLLTATQTVSSL 423 (426)
Q Consensus 398 npW---~~is~~aA~~ll~lt~~QTv~sv 423 (426)
+|| .++-++-+++-+|..++||+++.
T Consensus 14 spWrls~I~d~Fwgi~~fI~lFF~Tl~~p 42 (91)
T PF10961_consen 14 SPWRLSRITDFFWGIINFIVLFFQTLFSP 42 (91)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 456 35556666666777778888764
No 21
>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....
Probab=26.82 E-value=1.1e+02 Score=24.60 Aligned_cols=42 Identities=14% Similarity=0.240 Sum_probs=30.3
Q ss_pred HCCeeeeCCchHHHHHHHHhccCCccCCCCcchHHHHHHHHhhhcCc
Q 014375 337 QNDVIRLGNDGNIATVFGNLVRGSALDSDDFQYSGVVTDLQAYRKLP 383 (426)
Q Consensus 337 ~~GIi~lgsdeeva~lFn~L~~~~~~~~~~~~~~~v~~~ln~~~~~r 383 (426)
++|+..+-+.++||+++..--.. +.-. |.+++..+..||++.
T Consensus 27 ~~~eFki~d~~~vA~lWG~~k~~----~~m~-yeklsR~LR~yy~k~ 68 (85)
T PF00178_consen 27 RGGEFKIVDPEAVARLWGKHKNR----PNMN-YEKLSRALRYYYKKG 68 (85)
T ss_dssp STTEEEESSHHHHHHHHHHHTTS----TT-S-HHHHHHHHHHHHHTT
T ss_pred CCCeEEecCHHHHHHHHHHHcCC----cccc-HHHHHHHHHHHhhCC
Confidence 45555555789999999765332 1233 899999999999876
No 22
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=26.26 E-value=2.2e+02 Score=19.56 Aligned_cols=30 Identities=23% Similarity=0.233 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 014375 69 MEEHKQRYLKYFLQRTKVRMARFLSFIKER 98 (426)
Q Consensus 69 mE~~K~~~~~~~l~r~~~~l~~~~~~i~~~ 98 (426)
||+.|..-+++++=|....+.+-.+.++..
T Consensus 1 mek~~ieelkqll~rle~eirett~sl~ni 30 (46)
T PF08181_consen 1 MEKKKIEELKQLLWRLENEIRETTDSLRNI 30 (46)
T ss_pred CcHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888877766665555544443
No 23
>cd00344 FBP_aldolase_I Fructose-bisphosphate aldolase class I. Fructose-1,6-bisphosphate aldolase is an enzyme of the glycolytic and gluconeogenic pathways found in vertebrates, plants, and bacteria. The enzyme catalyzes the cleavage of fructose 1,6-bisphosphate to glyceraldehyde 3-phosphate and dihydroxyacetone phosphate (DHAP). Mutations in the aldolase genes in humans cause hemolytic anemia and hereditary fructose intolerance. The enzyme is a member of the class I aldolase family, which utilizes covalent catalysis through a Schiff base formed between a lysine residue of the enzyme and ketose substrates. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=24.64 E-value=1e+02 Score=31.08 Aligned_cols=81 Identities=20% Similarity=0.306 Sum_probs=50.8
Q ss_pred HHHHHHCCeee-eCCchHHHHHHHHhccCCccCCCCcchHHHHHHHHhhhc--CchHHhHhhhcccccccc-hHHHHHHH
Q 014375 332 EELLVQNDVIR-LGNDGNIATVFGNLVRGSALDSDDFQYSGVVTDLQAYRK--LPWHKWKAALKQNYFNTP-WASISVIA 407 (426)
Q Consensus 332 V~lL~~~GIi~-lgsdeeva~lFn~L~~~~~~~~~~~~~~~v~~~ln~~~~--~r~~~w~a~l~~~yf~np-W~~is~~a 407 (426)
+++|+++|||. +.=|+-+..+.+ ..+-.. ... ++++.+...+||+ -|..+||+.++-.- ..| -..|.-.|
T Consensus 83 ~~ll~~~GIvPgIKVDkGl~~l~g--~~~ek~--t~G-LD~L~~R~~~y~~~GarfaKwRsVi~i~~-~~Ps~~~I~~na 156 (328)
T cd00344 83 PQVIKSKGGVVGIKVDKGVVPLAG--TNGETT--TQG-LDGLSERCAQYKKDGADFAKWRCVLKIGE-HTPSALAIMENA 156 (328)
T ss_pred HHHHHhCCCeeeEEecCCcccCCC--CCCCcc--CCC-hHHHHHHHHHHhhcCCceeeeeeeeecCC-CCCcHHHHHHHH
Confidence 78999999999 877777766654 333222 233 8999999999985 44668998775431 112 13444444
Q ss_pred HHHHHHHHHHH
Q 014375 408 AVILLLLTATQ 418 (426)
Q Consensus 408 A~~ll~lt~~Q 418 (426)
..+.=...+.|
T Consensus 157 ~~laryA~~cq 167 (328)
T cd00344 157 NVLARYASICQ 167 (328)
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 24
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=23.92 E-value=71 Score=25.54 Aligned_cols=23 Identities=22% Similarity=0.350 Sum_probs=14.6
Q ss_pred cccchHHHHHHHHHHHHHHHHHH
Q 014375 396 FNTPWASISVIAAVILLLLTATQ 418 (426)
Q Consensus 396 f~npW~~is~~aA~~ll~lt~~Q 418 (426)
|.||-..+|+++|+++++.++..
T Consensus 8 ~kN~~~w~ali~~i~l~vq~~~~ 30 (84)
T PF04531_consen 8 FKNKAFWVALISAILLLVQQVGG 30 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHH
Confidence 36666677777776666655544
No 25
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=23.80 E-value=93 Score=22.92 Aligned_cols=21 Identities=29% Similarity=0.581 Sum_probs=16.4
Q ss_pred cchHHHHHHHHHHHHHHHHHH
Q 014375 398 TPWASISVIAAVILLLLTATQ 418 (426)
Q Consensus 398 npW~~is~~aA~~ll~lt~~Q 418 (426)
+||.+|.++.|+++-=+.++.
T Consensus 4 ~~wlIIviVlgvIigNia~LK 24 (55)
T PF11446_consen 4 NPWLIIVIVLGVIIGNIAALK 24 (55)
T ss_pred hhhHHHHHHHHHHHhHHHHHH
Confidence 699999999998776666554
No 26
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=23.75 E-value=82 Score=25.37 Aligned_cols=20 Identities=30% Similarity=0.650 Sum_probs=14.0
Q ss_pred ccchHHHHHHHHHHHHHHHHH
Q 014375 397 NTPWASISVIAAVILLLLTAT 417 (426)
Q Consensus 397 ~npW~~is~~aA~~ll~lt~~ 417 (426)
.|||..+++.++ +++++.++
T Consensus 71 e~P~~svgiAag-vG~llG~L 90 (94)
T PF05957_consen 71 ENPWQSVGIAAG-VGFLLGLL 90 (94)
T ss_pred HChHHHHHHHHH-HHHHHHHH
Confidence 489999887766 55555543
No 27
>PF09820 AAA-ATPase_like: Predicted AAA-ATPase; InterPro: IPR018631 This entry is predicted to be an AAA-ATPase domain []. It is usually found together with IPR012547 from INTERPRO.
Probab=22.61 E-value=80 Score=31.00 Aligned_cols=57 Identities=9% Similarity=0.238 Sum_probs=39.5
Q ss_pred CchHHHHHHHHhccCCccCCCCcchHHHHHHHHhhhcCchHHhHhhhcccccccchHHHHHH
Q 014375 345 NDGNIATVFGNLVRGSALDSDDFQYSGVVTDLQAYRKLPWHKWKAALKQNYFNTPWASISVI 406 (426)
Q Consensus 345 sdeeva~lFn~L~~~~~~~~~~~~~~~v~~~ln~~~~~r~~~w~a~l~~~yf~npW~~is~~ 406 (426)
+++||.++|+...+...... -.....++|.++|+.-.--+... ..-..|||.++..+
T Consensus 226 T~~Ev~~ll~~~~~~~~~~~---~~~~~~~~lk~wYdGY~F~~~~~--~~~iYNP~Svl~~l 282 (284)
T PF09820_consen 226 TEEEVETLLKYYIENLAEEQ---DREELLEELKEWYDGYHFGESSE--GERIYNPWSVLNYL 282 (284)
T ss_pred CHHHHHHHHHHHHHHhhhcc---chHHHHHHHHHHcCCcccCCCCC--CCCEEChHHHHHHh
Confidence 67899999998876654321 36778899999988663221110 35668999988765
No 28
>PTZ00019 fructose-bisphosphate aldolase; Provisional
Probab=22.54 E-value=1.5e+02 Score=30.06 Aligned_cols=82 Identities=23% Similarity=0.306 Sum_probs=50.8
Q ss_pred HHHHHHCCeee-eCCchHHHHHHHHhccCCccCCCCcchHHHHHHHHhhhc--CchHHhHhhhcccccc-cc-hHHHHHH
Q 014375 332 EELLVQNDVIR-LGNDGNIATVFGNLVRGSALDSDDFQYSGVVTDLQAYRK--LPWHKWKAALKQNYFN-TP-WASISVI 406 (426)
Q Consensus 332 V~lL~~~GIi~-lgsdeeva~lFn~L~~~~~~~~~~~~~~~v~~~ln~~~~--~r~~~w~a~l~~~yf~-np-W~~is~~ 406 (426)
|++|+++|||. +.=|+-+..+ .+. .+-. .... ++++.+...+||. -|+.+||+.++-.-=. .| ...|-..
T Consensus 85 ~~~L~~~GIvPgIKVDkGl~~l-~G~-~~e~--~t~G-LD~L~~R~~~y~~~GarFAKwRsVi~i~~~~g~PS~~aI~~n 159 (355)
T PTZ00019 85 VELLKEKGIVPGIKVDKGLVTL-PGT-DGET--STQG-LDGLAERAKKYYKAGARFAKWRAVLKIDPAKGKPSELAIQEN 159 (355)
T ss_pred HHHHHHCCCeeeEEcCCCccCC-CCC-CCCc--cCcC-hHHHHHHHHHHHhcCCceeeeeeeeeecCCCCCCcHHHHHHH
Confidence 88999999999 8777777666 332 2211 1233 8999999999986 4567899877543101 13 2234444
Q ss_pred HHHHHHHHHHHH
Q 014375 407 AAVILLLLTATQ 418 (426)
Q Consensus 407 aA~~ll~lt~~Q 418 (426)
|..+.=...+.|
T Consensus 160 a~~LaryA~icq 171 (355)
T PTZ00019 160 AWTLARYAAICQ 171 (355)
T ss_pred HHHHHHHHHHHH
Confidence 444444444554
No 29
>PF05391 Lsm_interact: Lsm interaction motif; InterPro: IPR008669 This short motif is found at the C terminus of Prp24 proteins and probably interacts with the Lsm proteins to promote U4/U6 formation [].
Probab=22.44 E-value=57 Score=19.21 Aligned_cols=12 Identities=33% Similarity=0.520 Sum_probs=10.5
Q ss_pred CCChhHHHHHHH
Q 014375 112 NLGSDEFVAMVL 123 (426)
Q Consensus 112 ~~~~~eF~~Mml 123 (426)
.+|.++|.+|+|
T Consensus 9 p~SNddFrkmfl 20 (21)
T PF05391_consen 9 PKSNDDFRKMFL 20 (21)
T ss_pred ccchHHHHHHHc
Confidence 689999999976
No 30
>cd00925 Cyt_c_Oxidase_VIa Cytochrome c oxidase subunit VIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIa is expressed in two tissue-specific isoforms in mammals but not fish. VIa-H is the heart and skeletal muscle isoform; VIa-L is the liver or non-muscle isoform. Mammalian VIa-H induces a slip in CcO (decrease in proton/electron stoichiometry) at high intramitochondrial ATP/ADP ratios, while VIa-L induces a permanent slip i
Probab=21.89 E-value=90 Score=25.20 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=20.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhh
Q 014375 398 TPWASISVIAAVILLLLTATQTVSS 422 (426)
Q Consensus 398 npW~~is~~aA~~ll~lt~~QTv~s 422 (426)
+=|+-||+++|+-+++++.+.|+..
T Consensus 14 ~~WkkiS~~va~P~v~l~~~n~y~~ 38 (86)
T cd00925 14 ELWKKISFYVALPAVALCMLNAYLK 38 (86)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 4588899999998888998888753
No 31
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=21.65 E-value=1.2e+02 Score=24.61 Aligned_cols=27 Identities=22% Similarity=0.460 Sum_probs=19.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhc
Q 014375 398 TPWASISVIAAVILLLLTATQTVSSLI 424 (426)
Q Consensus 398 npW~~is~~aA~~ll~lt~~QTv~sv~ 424 (426)
.+|+++|.++-+++.++++-=-+||.+
T Consensus 42 ~~wRalSii~FI~giil~lG~~i~s~y 68 (92)
T PF05767_consen 42 YTWRALSIICFILGIILTLGIVIFSMY 68 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888887777777777666666654
No 32
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=21.54 E-value=2.1e+02 Score=21.30 Aligned_cols=57 Identities=16% Similarity=0.290 Sum_probs=30.0
Q ss_pred CchHHHHHHH-HhccCCccCCCCcchHHHHHHHHhhhcC------chHHhHhhhcccccccchHHHHHHHHHH
Q 014375 345 NDGNIATVFG-NLVRGSALDSDDFQYSGVVTDLQAYRKL------PWHKWKAALKQNYFNTPWASISVIAAVI 410 (426)
Q Consensus 345 sdeeva~lFn-~L~~~~~~~~~~~~~~~v~~~ln~~~~~------r~~~w~a~l~~~yf~npW~~is~~aA~~ 410 (426)
+-+++++.|+ ....|+. =..+-+...+|=.+ +...|+. + -+.|.||+.++=++||++
T Consensus 5 ~~~~v~~~l~t~~~~GLs-------~~ev~~r~~~~G~N~l~~~~~~s~~~~-~-~~~f~~~~~~lL~~aail 68 (69)
T PF00690_consen 5 SVEEVLKRLNTSSSQGLS-------SEEVEERRKKYGPNELPEPKKKSLWRI-F-LKQFKNPFIILLLIAAIL 68 (69)
T ss_dssp SHHHHHHHHTTBTSSBBT-------HHHHHHHHHHHSSSSTTTTTSSSHHHH-H-HHHTTSHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCCCCCCC-------HHHHHHHHHhcccccccccccCcHHHH-H-HHHHHhHHHHHHHHHHHH
Confidence 3456666665 4444442 13444555554221 2223433 3 345688998877777764
Done!