Query 014376
Match_columns 426
No_of_seqs 453 out of 3173
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 04:31:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014376.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014376hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0744 AAA+-type ATPase [Post 100.0 3.5E-65 7.6E-70 480.5 29.3 334 35-370 13-353 (423)
2 COG1222 RPT1 ATP-dependent 26S 100.0 7.7E-36 1.7E-40 286.4 19.4 219 151-398 143-367 (406)
3 KOG0730 AAA+-type ATPase [Post 100.0 2.9E-35 6.3E-40 300.7 19.4 213 154-398 429-647 (693)
4 KOG0738 AAA+-type ATPase [Post 100.0 3.1E-33 6.8E-38 269.9 18.2 216 153-398 206-427 (491)
5 KOG0733 Nuclear AAA ATPase (VC 100.0 2.8E-33 6.2E-38 282.6 18.7 216 153-398 505-728 (802)
6 COG1223 Predicted ATPase (AAA+ 100.0 6.1E-33 1.3E-37 255.6 19.0 208 156-397 118-328 (368)
7 KOG0733 Nuclear AAA ATPase (VC 100.0 4.6E-31 1E-35 266.6 18.6 211 156-398 187-406 (802)
8 KOG0739 AAA+-type ATPase [Post 100.0 9E-32 1.9E-36 252.0 10.0 212 152-394 126-341 (439)
9 KOG0734 AAA+-type ATPase conta 100.0 2.3E-30 5.1E-35 258.0 15.3 218 149-398 294-516 (752)
10 KOG0737 AAA+-type ATPase [Post 100.0 5.5E-30 1.2E-34 247.4 16.6 225 149-400 82-308 (386)
11 KOG0727 26S proteasome regulat 100.0 5.2E-29 1.1E-33 228.8 15.0 220 149-397 145-370 (408)
12 KOG0731 AAA+-type ATPase conta 100.0 7.7E-29 1.7E-33 260.6 16.3 218 156-400 308-530 (774)
13 PTZ00454 26S protease regulato 100.0 1.4E-27 3.1E-32 241.3 21.7 217 153-398 139-361 (398)
14 KOG0736 Peroxisome assembly fa 100.0 5.3E-28 1.2E-32 249.9 18.2 214 154-397 667-889 (953)
15 COG0464 SpoVK ATPases of the A 100.0 1.1E-27 2.4E-32 250.6 20.1 216 153-398 236-457 (494)
16 KOG0728 26S proteasome regulat 100.0 1.4E-27 3E-32 219.2 17.6 219 151-398 139-363 (404)
17 TIGR01243 CDC48 AAA family ATP 100.0 2E-27 4.3E-32 259.1 22.1 213 155-398 449-667 (733)
18 CHL00195 ycf46 Ycf46; Provisio 100.0 4.2E-27 9.1E-32 242.8 22.5 213 155-398 224-439 (489)
19 KOG0735 AAA+-type ATPase [Post 100.0 1.1E-27 2.4E-32 245.5 17.2 209 156-396 664-878 (952)
20 PRK03992 proteasome-activating 99.9 2E-26 4.3E-31 233.5 21.0 216 154-398 126-347 (389)
21 PTZ00361 26 proteosome regulat 99.9 1.9E-26 4.1E-31 234.7 19.9 218 152-398 176-399 (438)
22 KOG0726 26S proteasome regulat 99.9 1.7E-27 3.7E-32 222.7 10.5 218 152-398 178-401 (440)
23 TIGR01241 FtsH_fam ATP-depende 99.9 2.3E-26 5E-31 240.3 19.6 216 154-398 50-270 (495)
24 KOG0652 26S proteasome regulat 99.9 1.9E-26 4.1E-31 212.8 13.8 216 152-396 164-385 (424)
25 COG0465 HflB ATP-dependent Zn 99.9 6.5E-26 1.4E-30 234.9 16.2 218 154-400 145-367 (596)
26 TIGR03689 pup_AAA proteasome A 99.9 5.1E-25 1.1E-29 227.2 20.8 197 154-359 177-380 (512)
27 KOG0740 AAA+-type ATPase [Post 99.9 9.5E-26 2.1E-30 225.1 14.1 215 154-398 148-366 (428)
28 TIGR01242 26Sp45 26S proteasom 99.9 1.3E-24 2.8E-29 219.0 19.9 215 154-397 117-337 (364)
29 KOG0729 26S proteasome regulat 99.9 1.7E-25 3.8E-30 207.1 11.1 218 152-398 170-393 (435)
30 PLN00020 ribulose bisphosphate 99.9 2.2E-24 4.8E-29 210.7 19.3 154 191-359 145-313 (413)
31 KOG0741 AAA+-type ATPase [Post 99.9 1.3E-24 2.7E-29 217.0 17.3 192 192-398 254-450 (744)
32 CHL00176 ftsH cell division pr 99.9 1.7E-24 3.7E-29 230.0 18.7 216 154-398 178-398 (638)
33 PRK10733 hflB ATP-dependent me 99.9 1.9E-23 4.2E-28 223.9 20.7 218 152-398 145-367 (644)
34 KOG0651 26S proteasome regulat 99.9 1.3E-23 2.9E-28 198.4 9.9 212 157-397 130-347 (388)
35 TIGR01243 CDC48 AAA family ATP 99.9 3E-22 6.4E-27 218.6 21.7 212 155-398 174-391 (733)
36 CHL00206 ycf2 Ycf2; Provisiona 99.9 3.4E-22 7.3E-27 224.0 16.8 176 193-398 1629-1852(2281)
37 KOG0730 AAA+-type ATPase [Post 99.9 6.3E-22 1.4E-26 203.2 16.5 181 191-398 215-396 (693)
38 KOG0732 AAA+-type ATPase conta 99.9 2.8E-22 6.1E-27 216.3 12.7 223 154-398 260-484 (1080)
39 KOG0742 AAA+-type ATPase [Post 99.8 3.6E-20 7.8E-25 180.5 16.4 233 153-422 349-583 (630)
40 PF00004 AAA: ATPase family as 99.8 2.2E-19 4.8E-24 153.6 14.3 130 197-343 1-132 (132)
41 TIGR02881 spore_V_K stage V sp 99.8 9E-19 1.9E-23 168.6 18.2 182 157-359 4-193 (261)
42 CHL00181 cbbX CbbX; Provisiona 99.8 2.2E-18 4.8E-23 167.7 16.9 186 155-360 19-212 (287)
43 KOG0743 AAA+-type ATPase [Post 99.8 4.5E-18 9.7E-23 169.2 15.0 202 156-395 198-412 (457)
44 TIGR02880 cbbX_cfxQ probable R 99.8 1.3E-17 2.8E-22 162.3 15.4 185 156-360 19-211 (284)
45 PF05496 RuvB_N: Holliday junc 99.7 1.1E-16 2.4E-21 147.6 13.1 158 157-360 22-195 (233)
46 TIGR00763 lon ATP-dependent pr 99.7 4.9E-16 1.1E-20 170.5 18.2 166 159-359 320-507 (775)
47 COG2255 RuvB Holliday junction 99.6 3.3E-15 7.2E-20 140.5 13.4 159 156-360 23-197 (332)
48 TIGR00635 ruvB Holliday juncti 99.6 1.6E-14 3.4E-19 142.1 17.4 157 157-359 2-174 (305)
49 COG0466 Lon ATP-dependent Lon 99.6 1.1E-14 2.4E-19 151.6 16.9 172 160-366 324-518 (782)
50 KOG0735 AAA+-type ATPase [Post 99.6 2.4E-14 5.1E-19 148.2 17.9 184 194-397 431-618 (952)
51 COG2256 MGS1 ATPase related to 99.6 1.2E-14 2.7E-19 142.7 14.7 152 157-359 22-178 (436)
52 PRK00080 ruvB Holliday junctio 99.6 2.6E-14 5.6E-19 142.1 16.7 157 157-359 23-195 (328)
53 PRK05342 clpX ATP-dependent pr 99.6 3.6E-14 7.9E-19 144.3 17.7 196 149-355 61-323 (412)
54 PRK07003 DNA polymerase III su 99.6 4.4E-14 9.6E-19 149.8 17.8 166 156-359 13-193 (830)
55 KOG2004 Mitochondrial ATP-depe 99.6 7.7E-15 1.7E-19 152.0 11.7 175 158-360 410-599 (906)
56 TIGR02639 ClpA ATP-dependent C 99.6 2.4E-14 5.1E-19 156.4 16.0 178 154-361 177-362 (731)
57 PRK14956 DNA polymerase III su 99.6 8.2E-14 1.8E-18 142.6 18.9 166 156-359 15-195 (484)
58 TIGR00362 DnaA chromosomal rep 99.6 1.1E-14 2.4E-19 148.9 10.8 142 195-359 137-283 (405)
59 PRK10787 DNA-binding ATP-depen 99.6 1E-13 2.2E-18 151.4 17.9 164 159-358 322-507 (784)
60 TIGR00390 hslU ATP-dependent p 99.6 1.8E-13 4E-18 137.1 18.1 190 150-353 3-342 (441)
61 PRK07940 DNA polymerase III su 99.5 1.3E-13 2.9E-18 139.5 16.8 170 156-355 2-187 (394)
62 PRK12323 DNA polymerase III su 99.5 4.3E-14 9.4E-19 148.1 13.3 166 156-359 13-198 (700)
63 PRK00149 dnaA chromosomal repl 99.5 2.1E-14 4.6E-19 148.7 10.9 142 195-359 149-295 (450)
64 TIGR00382 clpX endopeptidase C 99.5 1.5E-13 3.3E-18 139.2 16.8 201 147-358 65-332 (413)
65 PRK05201 hslU ATP-dependent pr 99.5 2.1E-13 4.5E-18 136.8 17.3 191 150-354 6-345 (443)
66 PRK14088 dnaA chromosomal repl 99.5 2.6E-14 5.5E-19 147.3 10.2 141 196-359 132-278 (440)
67 PRK12422 chromosomal replicati 99.5 2.8E-14 6.1E-19 146.8 9.4 139 196-359 143-286 (445)
68 PRK11034 clpA ATP-dependent Cl 99.5 3.7E-13 8.1E-18 146.0 17.7 180 153-362 180-367 (758)
69 PRK14962 DNA polymerase III su 99.5 5.4E-13 1.2E-17 138.1 17.6 166 156-359 11-191 (472)
70 PRK14949 DNA polymerase III su 99.5 6.1E-13 1.3E-17 143.7 17.8 166 156-359 13-193 (944)
71 KOG0989 Replication factor C, 99.5 2E-13 4.4E-18 129.8 12.1 166 156-359 33-203 (346)
72 PF00308 Bac_DnaA: Bacterial d 99.5 2E-13 4.2E-18 128.1 11.8 142 196-360 36-182 (219)
73 TIGR03345 VI_ClpV1 type VI sec 99.5 3.3E-13 7.3E-18 148.8 15.4 180 152-361 180-367 (852)
74 PRK14960 DNA polymerase III su 99.5 1.1E-12 2.4E-17 138.0 18.0 166 156-359 12-192 (702)
75 PRK07994 DNA polymerase III su 99.5 8.5E-13 1.8E-17 140.2 16.9 166 156-359 13-193 (647)
76 KOG0736 Peroxisome assembly fa 99.5 3.6E-13 7.9E-18 140.7 13.4 174 194-397 431-607 (953)
77 PHA02544 44 clamp loader, smal 99.5 1.5E-12 3.2E-17 128.7 16.9 159 156-360 18-176 (316)
78 PLN03025 replication factor C 99.5 1.3E-12 2.7E-17 129.5 16.2 159 156-359 10-173 (319)
79 PRK14961 DNA polymerase III su 99.5 1.5E-12 3.2E-17 131.3 16.5 166 156-359 13-193 (363)
80 PRK13407 bchI magnesium chelat 99.5 7.1E-13 1.5E-17 131.2 13.8 234 157-422 6-295 (334)
81 CHL00095 clpC Clp protease ATP 99.5 1.1E-12 2.5E-17 144.9 16.9 203 152-389 172-382 (821)
82 TIGR02928 orc1/cdc6 family rep 99.5 2.7E-12 5.8E-17 129.3 18.1 179 159-359 15-214 (365)
83 PRK10865 protein disaggregatio 99.5 7.3E-13 1.6E-17 146.5 14.9 179 152-360 171-357 (857)
84 PRK11034 clpA ATP-dependent Cl 99.5 1.3E-12 2.9E-17 141.7 16.5 169 160-362 459-671 (758)
85 PRK07764 DNA polymerase III su 99.4 1.4E-12 3.1E-17 142.5 16.6 166 156-359 12-194 (824)
86 PRK04195 replication factor C 99.4 1.9E-12 4.1E-17 135.2 16.8 162 157-359 12-175 (482)
87 PRK14964 DNA polymerase III su 99.4 2E-12 4.3E-17 133.7 16.3 166 156-359 10-190 (491)
88 PRK13342 recombination factor 99.4 2.1E-12 4.6E-17 132.4 16.3 154 156-360 9-167 (413)
89 PRK14086 dnaA chromosomal repl 99.4 6.8E-13 1.5E-17 139.3 12.6 141 196-359 316-461 (617)
90 PRK14958 DNA polymerase III su 99.4 1.8E-12 3.8E-17 135.6 15.6 166 156-359 13-193 (509)
91 TIGR02640 gas_vesic_GvpN gas v 99.4 2.6E-12 5.6E-17 123.8 15.7 139 194-357 21-198 (262)
92 PRK14087 dnaA chromosomal repl 99.4 5.3E-13 1.1E-17 137.7 11.5 143 196-359 143-290 (450)
93 PF05673 DUF815: Protein of un 99.4 1.1E-11 2.4E-16 116.0 18.6 161 157-360 25-210 (249)
94 TIGR02639 ClpA ATP-dependent C 99.4 2.3E-12 4.9E-17 140.9 16.5 172 156-361 451-666 (731)
95 PRK12402 replication factor C 99.4 3E-12 6.6E-17 127.3 16.0 168 156-359 12-199 (337)
96 TIGR01650 PD_CobS cobaltochela 99.4 3.6E-13 7.8E-18 131.8 9.1 137 194-357 64-233 (327)
97 PRK14952 DNA polymerase III su 99.4 3.8E-12 8.3E-17 134.4 17.5 166 156-359 10-192 (584)
98 PRK00411 cdc6 cell division co 99.4 8.3E-12 1.8E-16 127.1 19.2 175 159-359 30-222 (394)
99 CHL00081 chlI Mg-protoporyphyr 99.4 1.8E-12 3.9E-17 128.7 13.7 235 156-422 14-311 (350)
100 TIGR02030 BchI-ChlI magnesium 99.4 1.4E-12 3.1E-17 129.3 12.9 167 158-357 3-219 (337)
101 PRK06645 DNA polymerase III su 99.4 4.7E-12 1E-16 131.8 17.2 166 156-359 18-202 (507)
102 PRK08691 DNA polymerase III su 99.4 3.5E-12 7.7E-17 135.2 16.3 166 156-359 13-193 (709)
103 TIGR03346 chaperone_ClpB ATP-d 99.4 2.9E-12 6.2E-17 142.2 16.4 181 151-361 165-353 (852)
104 TIGR02902 spore_lonB ATP-depen 99.4 3.7E-12 8E-17 134.2 16.0 174 156-360 62-279 (531)
105 PRK14963 DNA polymerase III su 99.4 2.7E-12 5.9E-17 133.9 14.8 166 156-359 11-190 (504)
106 COG0593 DnaA ATPase involved i 99.4 8.4E-13 1.8E-17 132.5 10.5 239 62-358 14-258 (408)
107 PRK14951 DNA polymerase III su 99.4 2.1E-12 4.6E-17 136.9 13.3 166 156-359 13-198 (618)
108 KOG2028 ATPase related to the 99.4 2.6E-11 5.5E-16 117.7 19.0 161 156-363 135-300 (554)
109 PRK14957 DNA polymerase III su 99.4 1.2E-11 2.6E-16 129.6 17.9 166 156-359 13-193 (546)
110 PRK05563 DNA polymerase III su 99.4 7.6E-12 1.6E-16 132.4 16.4 166 156-359 13-193 (559)
111 PRK13341 recombination factor 99.4 9.6E-12 2.1E-16 134.5 17.3 155 156-360 25-184 (725)
112 PRK14969 DNA polymerase III su 99.4 5.6E-12 1.2E-16 132.5 14.6 166 156-359 13-193 (527)
113 TIGR02397 dnaX_nterm DNA polym 99.4 1.2E-11 2.6E-16 124.1 15.8 167 156-360 11-192 (355)
114 PRK07133 DNA polymerase III su 99.4 1.5E-11 3.3E-16 131.5 17.3 166 156-359 15-192 (725)
115 TIGR03420 DnaA_homol_Hda DnaA 99.4 2.1E-11 4.5E-16 114.4 16.0 132 194-359 38-174 (226)
116 PRK14959 DNA polymerase III su 99.4 1E-11 2.2E-16 131.0 15.1 166 156-359 13-193 (624)
117 PRK14965 DNA polymerase III su 99.4 1E-11 2.3E-16 131.9 15.3 166 156-359 13-193 (576)
118 COG1219 ClpX ATP-dependent pro 99.3 5.2E-12 1.1E-16 120.7 11.0 152 146-309 48-203 (408)
119 PRK06893 DNA replication initi 99.3 6.9E-12 1.5E-16 118.4 11.6 132 194-359 39-176 (229)
120 PTZ00112 origin recognition co 99.3 5.5E-11 1.2E-15 127.2 19.2 179 159-360 755-952 (1164)
121 PRK05896 DNA polymerase III su 99.3 1.8E-11 3.9E-16 128.6 15.3 166 156-359 13-193 (605)
122 PRK06305 DNA polymerase III su 99.3 1.6E-11 3.4E-16 126.9 13.6 166 156-359 14-195 (451)
123 COG1474 CDC6 Cdc6-related prot 99.3 7.4E-11 1.6E-15 118.5 17.9 179 161-367 19-213 (366)
124 COG2812 DnaX DNA polymerase II 99.3 1.6E-11 3.4E-16 126.8 13.3 166 156-359 13-193 (515)
125 PRK08903 DnaA regulatory inact 99.3 1.1E-10 2.3E-15 110.0 18.0 126 194-359 42-172 (227)
126 cd00009 AAA The AAA+ (ATPases 99.3 4.6E-11 1E-15 102.5 14.3 127 194-343 19-151 (151)
127 PRK08084 DNA replication initi 99.3 1.8E-11 3.9E-16 116.0 12.7 131 195-359 46-182 (235)
128 PRK09111 DNA polymerase III su 99.3 5.3E-11 1.2E-15 126.4 17.4 166 156-359 21-206 (598)
129 COG0542 clpA ATP-binding subun 99.3 2.4E-11 5.3E-16 130.0 13.9 172 158-362 490-710 (786)
130 PRK14970 DNA polymerase III su 99.3 8.9E-11 1.9E-15 118.6 17.3 166 156-359 14-182 (367)
131 PRK08451 DNA polymerase III su 99.3 2.8E-11 6.1E-16 126.3 13.8 166 156-359 11-191 (535)
132 CHL00095 clpC Clp protease ATP 99.3 4.7E-11 1E-15 132.1 16.3 173 158-362 508-737 (821)
133 PHA02244 ATPase-like protein 99.3 7.2E-11 1.6E-15 117.0 15.8 126 195-353 120-269 (383)
134 PRK08727 hypothetical protein; 99.3 2.5E-11 5.4E-16 114.9 12.2 131 195-359 42-177 (233)
135 COG0714 MoxR-like ATPases [Gen 99.3 1.2E-11 2.6E-16 123.0 10.4 137 194-355 43-201 (329)
136 PRK14948 DNA polymerase III su 99.3 6.4E-11 1.4E-15 126.5 16.4 166 156-359 13-195 (620)
137 PRK14953 DNA polymerase III su 99.3 8.4E-11 1.8E-15 122.4 16.8 166 156-359 13-193 (486)
138 PRK06647 DNA polymerase III su 99.3 2.4E-11 5.1E-16 128.4 12.9 166 156-359 13-193 (563)
139 PRK14954 DNA polymerase III su 99.3 3.8E-11 8.3E-16 127.7 13.8 166 156-359 13-201 (620)
140 PRK13531 regulatory ATPase Rav 99.3 5.7E-11 1.2E-15 121.6 14.3 217 159-422 20-273 (498)
141 PRK05642 DNA replication initi 99.3 2.8E-11 6.1E-16 114.7 11.3 131 195-359 46-181 (234)
142 PRK14955 DNA polymerase III su 99.3 2.4E-11 5.3E-16 123.9 11.3 166 156-359 13-201 (397)
143 PRK14950 DNA polymerase III su 99.2 1.5E-10 3.3E-15 123.5 16.9 166 156-359 13-194 (585)
144 TIGR03346 chaperone_ClpB ATP-d 99.2 1.2E-10 2.7E-15 129.2 16.6 175 156-361 562-780 (852)
145 TIGR03345 VI_ClpV1 type VI sec 99.2 1.1E-10 2.5E-15 128.9 15.8 170 158-362 565-785 (852)
146 PRK10865 protein disaggregatio 99.2 1.4E-10 3E-15 128.6 16.1 175 156-362 565-784 (857)
147 PRK07399 DNA polymerase III su 99.2 4.7E-10 1E-14 110.6 18.1 168 157-357 2-195 (314)
148 PRK00440 rfc replication facto 99.2 2.5E-10 5.5E-15 112.5 16.2 162 156-359 14-176 (319)
149 TIGR02442 Cob-chelat-sub cobal 99.2 8.4E-11 1.8E-15 126.5 13.2 167 158-357 3-214 (633)
150 PRK07471 DNA polymerase III su 99.2 2.8E-10 6E-15 114.4 15.8 169 157-357 17-213 (365)
151 TIGR02903 spore_lon_C ATP-depe 99.2 1.7E-10 3.7E-15 123.5 15.0 171 156-359 151-368 (615)
152 PRK08058 DNA polymerase III su 99.2 1.3E-10 2.9E-15 115.5 12.9 160 157-355 3-180 (329)
153 TIGR00678 holB DNA polymerase 99.2 3E-10 6.6E-15 103.8 13.8 136 195-356 15-167 (188)
154 PF07724 AAA_2: AAA domain (Cd 99.2 4.6E-11 1E-15 107.6 7.7 120 195-326 4-132 (171)
155 PRK05564 DNA polymerase III su 99.2 4E-10 8.7E-15 111.4 14.7 163 157-357 2-165 (313)
156 PRK14971 DNA polymerase III su 99.2 2.4E-10 5.3E-15 122.0 13.3 166 156-359 14-195 (614)
157 PRK09112 DNA polymerase III su 99.2 8.8E-10 1.9E-14 110.3 16.1 167 157-355 21-211 (351)
158 PRK06620 hypothetical protein; 99.2 2.8E-10 6.1E-15 106.3 11.6 114 195-359 45-162 (214)
159 KOG1969 DNA replication checkp 99.2 5.8E-10 1.3E-14 116.6 14.9 167 157-355 269-479 (877)
160 COG2607 Predicted ATPase (AAA+ 99.1 3.1E-09 6.7E-14 98.3 17.7 160 158-360 59-242 (287)
161 PF07728 AAA_5: AAA domain (dy 99.1 1.1E-11 2.4E-16 107.5 1.4 112 196-335 1-139 (139)
162 PRK11331 5-methylcytosine-spec 99.1 4.9E-10 1.1E-14 113.9 13.1 164 158-343 174-357 (459)
163 smart00382 AAA ATPases associa 99.1 3.8E-10 8.2E-15 95.8 10.6 131 194-344 2-147 (148)
164 COG0464 SpoVK ATPases of the A 99.1 1.2E-09 2.5E-14 114.8 15.7 184 180-397 9-194 (494)
165 PF13177 DNA_pol3_delta2: DNA 99.1 1.1E-09 2.3E-14 98.0 12.8 147 163-344 1-161 (162)
166 COG0470 HolB ATPase involved i 99.1 1.4E-09 3E-14 107.4 14.4 158 160-350 2-174 (325)
167 PRK09087 hypothetical protein; 99.1 3.3E-10 7.1E-15 106.8 8.5 119 195-359 45-168 (226)
168 PRK05707 DNA polymerase III su 99.1 1.7E-09 3.8E-14 107.2 13.7 140 195-356 23-177 (328)
169 smart00763 AAA_PrkA PrkA AAA d 99.1 2.3E-09 5E-14 106.3 14.4 70 157-236 48-118 (361)
170 TIGR02031 BchD-ChlD magnesium 99.1 1.3E-09 2.8E-14 116.2 13.0 196 195-422 17-247 (589)
171 PF01078 Mg_chelatase: Magnesi 99.0 1.7E-10 3.8E-15 105.8 5.0 156 158-347 2-205 (206)
172 PRK08116 hypothetical protein; 99.0 2E-09 4.4E-14 103.9 11.9 173 149-359 75-262 (268)
173 PRK06964 DNA polymerase III su 99.0 2.1E-09 4.6E-14 106.8 11.4 143 194-355 21-202 (342)
174 COG1224 TIP49 DNA helicase TIP 99.0 1.5E-08 3.2E-13 98.6 16.5 53 159-220 39-91 (450)
175 PF07726 AAA_3: ATPase family 99.0 1.2E-09 2.6E-14 92.5 7.7 109 196-336 1-130 (131)
176 KOG0991 Replication factor C, 99.0 3.3E-09 7.2E-14 97.6 10.9 147 157-348 25-176 (333)
177 COG1220 HslU ATP-dependent pro 99.0 9.7E-09 2.1E-13 99.2 14.6 86 266-354 249-346 (444)
178 TIGR00368 Mg chelatase-related 99.0 8.4E-09 1.8E-13 107.6 15.2 151 157-347 190-394 (499)
179 COG1239 ChlI Mg-chelatase subu 99.0 6.2E-09 1.3E-13 103.8 13.1 171 156-358 14-233 (423)
180 PRK06871 DNA polymerase III su 99.0 1.2E-08 2.5E-13 100.9 14.2 139 195-356 25-178 (325)
181 PRK08769 DNA polymerase III su 98.9 2.2E-08 4.8E-13 98.7 14.6 142 195-355 27-183 (319)
182 smart00350 MCM minichromosome 98.9 4.4E-09 9.6E-14 110.6 10.3 140 194-359 236-402 (509)
183 PF06068 TIP49: TIP49 C-termin 98.9 3.4E-08 7.3E-13 97.4 15.5 74 267-359 278-363 (398)
184 PRK09862 putative ATP-dependen 98.9 8.1E-09 1.7E-13 107.4 11.8 131 193-347 209-391 (506)
185 COG0542 clpA ATP-binding subun 98.9 1.8E-08 3.8E-13 108.3 14.3 184 149-362 160-351 (786)
186 PRK07993 DNA polymerase III su 98.9 1.7E-08 3.6E-13 100.5 13.1 142 195-355 25-178 (334)
187 TIGR00764 lon_rel lon-related 98.9 6.3E-08 1.4E-12 103.7 17.9 50 156-221 15-64 (608)
188 KOG0741 AAA+-type ATPase [Post 98.9 1.2E-08 2.6E-13 103.5 11.2 139 195-354 539-683 (744)
189 PRK11608 pspF phage shock prot 98.9 4.7E-08 1E-12 97.2 15.2 166 157-362 4-199 (326)
190 KOG0745 Putative ATP-dependent 98.9 6.3E-09 1.4E-13 103.3 8.7 139 195-344 227-386 (564)
191 TIGR02974 phageshock_pspF psp 98.9 9.5E-08 2.1E-12 95.1 17.2 140 195-362 23-192 (329)
192 KOG2035 Replication factor C, 98.9 7.7E-08 1.7E-12 90.8 15.3 171 158-360 12-202 (351)
193 COG1116 TauB ABC-type nitrate/ 98.8 2.8E-08 6.1E-13 93.1 12.0 31 189-219 24-54 (248)
194 COG1126 GlnQ ABC-type polar am 98.8 3.3E-09 7.1E-14 97.0 4.8 117 189-326 23-199 (240)
195 PRK06090 DNA polymerase III su 98.8 7.2E-08 1.6E-12 95.1 14.0 139 195-355 26-178 (319)
196 TIGR01817 nifA Nif-specific re 98.8 1.1E-07 2.5E-12 100.7 16.6 168 155-362 192-389 (534)
197 COG1125 OpuBA ABC-type proline 98.8 2.1E-08 4.5E-13 93.8 8.9 46 189-241 22-67 (309)
198 TIGR00602 rad24 checkpoint pro 98.8 7.3E-08 1.6E-12 102.9 13.8 181 157-360 82-290 (637)
199 KOG0990 Replication factor C, 98.8 1.8E-08 3.9E-13 96.9 8.2 168 151-356 33-202 (360)
200 PRK04132 replication factor C 98.8 5.2E-08 1.1E-12 106.6 12.8 135 196-358 566-703 (846)
201 COG1221 PspF Transcriptional r 98.8 1.3E-07 2.9E-12 95.1 14.5 174 155-366 74-273 (403)
202 PRK08699 DNA polymerase III su 98.7 4E-08 8.6E-13 97.5 10.0 143 194-355 21-183 (325)
203 PF05729 NACHT: NACHT domain 98.7 2.2E-07 4.8E-12 82.0 13.7 155 195-359 1-165 (166)
204 KOG1514 Origin recognition com 98.7 4E-07 8.6E-12 95.6 16.7 153 194-360 422-592 (767)
205 COG1120 FepC ABC-type cobalami 98.7 1.3E-08 2.8E-13 96.7 5.3 42 189-237 23-64 (258)
206 COG0606 Predicted ATPase with 98.7 8E-08 1.7E-12 97.3 11.1 47 157-219 177-223 (490)
207 COG3842 PotA ABC-type spermidi 98.7 9.6E-09 2.1E-13 101.8 4.4 45 189-240 26-70 (352)
208 PF00158 Sigma54_activat: Sigm 98.7 2.4E-07 5.1E-12 83.3 12.5 102 195-324 23-144 (168)
209 PRK07952 DNA replication prote 98.7 5.3E-08 1.1E-12 92.6 8.7 72 195-279 100-174 (244)
210 TIGR03015 pepcterm_ATPase puta 98.7 4.4E-07 9.5E-12 87.3 15.0 166 195-387 44-231 (269)
211 KOG2227 Pre-initiation complex 98.7 3.8E-07 8.2E-12 91.9 14.7 208 160-411 151-381 (529)
212 PRK12377 putative replication 98.7 1.2E-07 2.7E-12 90.3 10.8 113 195-335 102-222 (248)
213 cd03222 ABC_RNaseL_inhibitor T 98.7 1.6E-07 3.5E-12 85.1 11.0 111 189-324 20-133 (177)
214 KOG1942 DNA helicase, TBP-inte 98.7 1.8E-06 4E-11 82.2 18.0 74 267-359 296-382 (456)
215 cd03216 ABC_Carb_Monos_I This 98.7 1.9E-07 4.1E-12 83.5 10.8 110 189-323 21-142 (163)
216 PRK06921 hypothetical protein; 98.7 3.3E-07 7.1E-12 88.5 13.1 119 194-334 117-239 (266)
217 PRK10820 DNA-binding transcrip 98.7 3.4E-07 7.4E-12 96.7 14.3 167 156-362 201-397 (520)
218 PF13173 AAA_14: AAA domain 98.6 1.4E-07 2.9E-12 80.8 8.8 122 194-348 2-126 (128)
219 PRK15429 formate hydrogenlyase 98.6 8.9E-07 1.9E-11 96.7 17.3 171 157-362 374-569 (686)
220 PRK05022 anaerobic nitric oxid 98.6 1.2E-06 2.6E-11 92.4 17.7 165 158-362 186-380 (509)
221 PRK06835 DNA replication prote 98.6 1.4E-07 3.1E-12 93.5 10.0 115 195-335 184-305 (329)
222 COG1118 CysA ABC-type sulfate/ 98.6 2.8E-08 6E-13 95.3 4.7 42 189-237 23-64 (345)
223 PRK08181 transposase; Validate 98.6 4.5E-08 9.7E-13 94.4 6.2 125 194-346 106-244 (269)
224 COG1134 TagH ABC-type polysacc 98.6 2.8E-07 6E-12 86.1 11.1 114 189-323 48-207 (249)
225 COG4555 NatA ABC-type Na+ tran 98.6 6.5E-07 1.4E-11 81.2 13.0 44 189-239 23-66 (245)
226 PF05621 TniB: Bacterial TniB 98.6 6.9E-07 1.5E-11 86.5 14.0 150 195-358 62-228 (302)
227 cd01120 RecA-like_NTPases RecA 98.6 5.8E-07 1.2E-11 78.8 12.6 23 197-219 2-24 (165)
228 COG1136 SalX ABC-type antimicr 98.6 5.7E-07 1.2E-11 83.9 12.9 44 189-239 26-69 (226)
229 COG3839 MalK ABC-type sugar tr 98.6 8.2E-08 1.8E-12 94.7 7.2 45 189-240 24-68 (338)
230 cd03214 ABC_Iron-Siderophores_ 98.6 2.9E-07 6.4E-12 83.5 10.2 44 189-239 20-63 (180)
231 COG2884 FtsE Predicted ATPase 98.6 1.3E-07 2.8E-12 84.9 7.4 45 189-240 23-67 (223)
232 TIGR02329 propionate_PrpR prop 98.6 1.3E-06 2.8E-11 92.0 16.1 167 156-362 209-406 (526)
233 PRK09183 transposase/IS protei 98.6 8E-08 1.7E-12 92.4 6.4 106 192-324 100-206 (259)
234 KOG1051 Chaperone HSP104 and r 98.6 1.5E-06 3.3E-11 94.8 16.8 172 157-360 560-787 (898)
235 cd03246 ABCC_Protease_Secretio 98.6 2.1E-07 4.5E-12 83.9 8.4 31 189-219 23-53 (173)
236 PRK05917 DNA polymerase III su 98.6 5.8E-07 1.3E-11 87.2 11.8 126 195-344 20-154 (290)
237 PRK11388 DNA-binding transcrip 98.6 1.7E-06 3.6E-11 93.9 16.7 165 157-361 323-514 (638)
238 PF13401 AAA_22: AAA domain; P 98.6 3.6E-07 7.7E-12 77.8 9.3 85 194-280 4-100 (131)
239 KOG1970 Checkpoint RAD17-RFC c 98.6 5.1E-06 1.1E-10 85.3 18.8 29 194-222 110-138 (634)
240 PF01637 Arch_ATPase: Archaeal 98.6 3.2E-07 7E-12 85.5 9.7 150 194-360 20-207 (234)
241 PF14532 Sigma54_activ_2: Sigm 98.6 2E-07 4.3E-12 80.9 7.7 108 195-343 22-137 (138)
242 PTZ00111 DNA replication licen 98.6 6E-07 1.3E-11 98.1 12.7 144 192-358 490-658 (915)
243 PRK06526 transposase; Provisio 98.5 1.1E-07 2.4E-12 91.1 6.1 26 194-219 98-123 (254)
244 PRK08939 primosomal protein Dn 98.5 3.5E-07 7.7E-12 90.0 9.6 65 149-219 117-181 (306)
245 PRK15424 propionate catabolism 98.5 1.3E-06 2.8E-11 92.0 14.4 170 157-360 217-419 (538)
246 COG1117 PstB ABC-type phosphat 98.5 4E-07 8.7E-12 83.3 9.1 52 189-242 28-79 (253)
247 cd03228 ABCC_MRP_Like The MRP 98.5 4.2E-07 9.1E-12 81.8 8.9 31 189-219 23-53 (171)
248 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.5 1.1E-06 2.4E-11 76.9 11.1 77 189-276 21-97 (144)
249 COG1121 ZnuC ABC-type Mn/Zn tr 98.5 8.6E-07 1.9E-11 84.0 10.6 31 189-219 25-55 (254)
250 COG2204 AtoC Response regulato 98.5 2.3E-06 5E-11 87.7 14.2 172 157-363 139-335 (464)
251 COG4586 ABC-type uncharacteriz 98.5 8.4E-07 1.8E-11 83.9 10.1 45 189-240 45-89 (325)
252 cd00267 ABC_ATPase ABC (ATP-bi 98.5 1.1E-06 2.4E-11 77.8 10.5 110 189-323 20-140 (157)
253 cd03247 ABCC_cytochrome_bd The 98.5 2.5E-06 5.3E-11 77.3 12.6 31 189-219 23-53 (178)
254 cd03229 ABC_Class3 This class 98.5 1.4E-06 2.9E-11 79.0 10.9 31 189-219 21-51 (178)
255 cd03230 ABC_DR_subfamily_A Thi 98.5 1.3E-06 2.9E-11 78.7 10.7 31 189-219 21-51 (173)
256 cd03238 ABC_UvrA The excision 98.4 3.9E-06 8.4E-11 76.0 13.3 28 189-216 16-43 (176)
257 PF01695 IstB_IS21: IstB-like 98.4 1.2E-07 2.7E-12 86.0 3.4 103 194-324 47-150 (178)
258 TIGR01618 phage_P_loop phage n 98.4 1.1E-06 2.5E-11 82.1 9.9 120 194-324 12-144 (220)
259 PRK05818 DNA polymerase III su 98.4 1.4E-06 3.1E-11 82.8 10.7 133 194-344 7-147 (261)
260 COG1122 CbiO ABC-type cobalt t 98.4 8E-08 1.7E-12 90.8 2.1 31 189-219 25-55 (235)
261 cd03283 ABC_MutS-like MutS-lik 98.4 1.8E-06 3.8E-11 79.8 10.7 29 190-218 21-49 (199)
262 cd03215 ABC_Carb_Monos_II This 98.4 2.6E-06 5.6E-11 77.5 11.5 31 189-219 21-51 (182)
263 COG4619 ABC-type uncharacteriz 98.4 1.6E-06 3.5E-11 76.5 9.1 44 189-239 24-67 (223)
264 PRK09376 rho transcription ter 98.4 6.3E-06 1.4E-10 82.7 14.3 90 190-284 165-273 (416)
265 cd01128 rho_factor Transcripti 98.4 5.3E-06 1.1E-10 79.2 13.2 130 190-324 12-167 (249)
266 COG1124 DppF ABC-type dipeptid 98.4 2.4E-06 5.2E-11 79.7 10.3 42 189-237 28-69 (252)
267 PRK13406 bchD magnesium chelat 98.4 1E-06 2.2E-11 93.6 8.6 190 195-422 26-239 (584)
268 COG1131 CcmA ABC-type multidru 98.4 1.8E-06 3.8E-11 84.6 9.7 43 189-238 26-68 (293)
269 cd03243 ABC_MutS_homologs The 98.4 5.8E-06 1.3E-10 76.5 12.6 29 189-217 24-52 (202)
270 COG1484 DnaC DNA replication p 98.4 1.7E-06 3.6E-11 83.0 9.2 103 194-325 105-210 (254)
271 COG3829 RocR Transcriptional r 98.4 1.5E-06 3.3E-11 89.4 9.4 165 155-361 241-438 (560)
272 TIGR02915 PEP_resp_reg putativ 98.4 7.5E-06 1.6E-10 84.8 14.8 140 195-362 163-332 (445)
273 cd03223 ABCD_peroxisomal_ALDP 98.3 4E-06 8.7E-11 75.1 10.9 31 189-219 22-52 (166)
274 COG1127 Ttg2A ABC-type transpo 98.3 2.7E-06 5.8E-11 79.3 9.8 44 189-239 29-72 (263)
275 TIGR01186 proV glycine betaine 98.3 2.5E-07 5.4E-12 93.1 3.2 31 189-219 14-44 (363)
276 PRK13537 nodulation ABC transp 98.3 1.5E-06 3.2E-11 85.7 8.5 31 189-219 28-58 (306)
277 cd03226 ABC_cobalt_CbiO_domain 98.3 5E-06 1.1E-10 76.9 11.2 31 189-219 21-51 (205)
278 PRK09536 btuD corrinoid ABC tr 98.3 5.9E-07 1.3E-11 91.6 5.3 31 189-219 24-54 (402)
279 PRK11650 ugpC glycerol-3-phosp 98.3 1.8E-06 3.9E-11 86.9 8.7 31 189-219 25-55 (356)
280 TIGR03265 PhnT2 putative 2-ami 98.3 1.7E-06 3.8E-11 86.9 8.5 31 189-219 25-55 (353)
281 TIGR00960 3a0501s02 Type II (G 98.3 1.4E-06 3E-11 81.3 7.2 31 189-219 24-54 (216)
282 TIGR01166 cbiO cobalt transpor 98.3 1.4E-06 3.1E-11 79.6 7.0 31 189-219 13-43 (190)
283 PF03215 Rad17: Rad17 cell cyc 98.3 2.2E-05 4.8E-10 82.4 16.8 56 158-222 18-73 (519)
284 PRK07276 DNA polymerase III su 98.3 1.1E-05 2.3E-10 78.6 13.4 136 195-353 25-171 (290)
285 cd03268 ABC_BcrA_bacitracin_re 98.3 1.3E-06 2.9E-11 81.0 6.6 31 189-219 21-51 (208)
286 PRK13536 nodulation factor exp 98.3 4.5E-06 9.8E-11 83.5 10.8 31 189-219 62-92 (340)
287 cd03225 ABC_cobalt_CbiO_domain 98.3 1.4E-06 3E-11 81.0 6.5 31 189-219 22-52 (211)
288 PRK11432 fbpC ferric transport 98.3 2.3E-06 5E-11 85.9 8.4 31 189-219 27-57 (351)
289 PRK09452 potA putrescine/sperm 98.3 2.3E-06 5E-11 86.6 8.4 31 189-219 35-65 (375)
290 PRK13539 cytochrome c biogenes 98.3 1.2E-05 2.7E-10 74.5 12.7 31 189-219 23-53 (207)
291 PRK13538 cytochrome c biogenes 98.3 1.2E-05 2.5E-10 74.5 12.5 31 189-219 22-52 (204)
292 TIGR01188 drrA daunorubicin re 98.3 5.2E-06 1.1E-10 81.7 10.7 31 189-219 14-44 (302)
293 PRK13765 ATP-dependent proteas 98.3 1.3E-05 2.8E-10 86.0 14.4 49 156-220 28-76 (637)
294 PRK07132 DNA polymerase III su 98.3 1.7E-05 3.6E-10 77.8 13.9 135 195-355 19-160 (299)
295 TIGR03258 PhnT 2-aminoethylpho 98.3 2.5E-06 5.5E-11 85.9 8.4 31 189-219 26-56 (362)
296 cd03217 ABC_FeS_Assembly ABC-t 98.3 6.9E-06 1.5E-10 75.8 10.6 30 189-218 21-50 (200)
297 cd03280 ABC_MutS2 MutS2 homolo 98.3 1E-05 2.2E-10 74.7 11.7 27 189-215 22-49 (200)
298 COG4608 AppF ABC-type oligopep 98.3 3.9E-06 8.4E-11 79.8 8.9 112 189-324 34-171 (268)
299 cd03269 ABC_putative_ATPase Th 98.2 1E-05 2.2E-10 75.0 11.6 31 189-219 21-51 (210)
300 PF00910 RNA_helicase: RNA hel 98.2 3E-06 6.5E-11 70.3 7.0 26 197-222 1-26 (107)
301 PRK10923 glnG nitrogen regulat 98.2 1.1E-05 2.4E-10 84.1 12.8 140 195-362 162-331 (469)
302 cd03232 ABC_PDR_domain2 The pl 98.2 2.6E-06 5.5E-11 78.2 7.1 30 189-218 28-57 (192)
303 PRK13541 cytochrome c biogenes 98.2 1.6E-05 3.5E-10 73.0 12.4 31 189-219 21-51 (195)
304 cd03258 ABC_MetN_methionine_tr 98.2 1.9E-06 4.2E-11 81.3 6.5 31 189-219 26-56 (233)
305 PRK13650 cbiO cobalt transport 98.2 1.8E-06 3.9E-11 84.0 6.4 31 189-219 28-58 (279)
306 PF12775 AAA_7: P-loop contain 98.2 6.5E-06 1.4E-10 79.7 10.2 143 194-362 33-198 (272)
307 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.2 2.9E-06 6.4E-11 79.2 7.6 31 189-219 25-55 (218)
308 cd03292 ABC_FtsE_transporter F 98.2 9.1E-06 2E-10 75.6 10.8 31 189-219 22-52 (214)
309 TIGR02237 recomb_radB DNA repa 98.2 1.2E-05 2.7E-10 74.5 11.6 120 193-323 11-149 (209)
310 PRK13635 cbiO cobalt transport 98.2 1.7E-06 3.7E-11 84.2 6.0 31 189-219 28-58 (279)
311 PRK13540 cytochrome c biogenes 98.2 1.1E-05 2.4E-10 74.4 11.1 31 189-219 22-52 (200)
312 PRK13647 cbiO cobalt transport 98.2 2.2E-06 4.7E-11 83.2 6.6 31 189-219 26-56 (274)
313 cd03266 ABC_NatA_sodium_export 98.2 8E-06 1.7E-10 76.2 10.2 31 189-219 26-56 (218)
314 TIGR02673 FtsE cell division A 98.2 8.6E-06 1.9E-10 75.8 10.3 31 189-219 23-53 (214)
315 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.2 1E-05 2.2E-10 76.1 10.7 31 189-219 43-73 (224)
316 cd03281 ABC_MSH5_euk MutS5 hom 98.2 1.4E-05 3E-10 74.7 11.6 22 195-216 30-51 (213)
317 PRK11144 modC molybdate transp 98.2 9.2E-07 2E-11 88.9 3.9 31 189-219 19-49 (352)
318 cd03224 ABC_TM1139_LivF_branch 98.2 2.5E-06 5.3E-11 79.9 6.5 31 189-219 21-51 (222)
319 cd03261 ABC_Org_Solvent_Resist 98.2 2.2E-06 4.7E-11 81.1 6.2 31 189-219 21-51 (235)
320 TIGR03410 urea_trans_UrtE urea 98.2 1.8E-06 3.9E-11 81.4 5.6 31 189-219 21-51 (230)
321 COG4175 ProV ABC-type proline/ 98.2 4.2E-06 9.2E-11 80.8 8.1 148 189-360 49-268 (386)
322 TIGR03608 L_ocin_972_ABC putat 98.2 1.6E-05 3.5E-10 73.4 11.9 31 189-219 19-49 (206)
323 PRK11231 fecE iron-dicitrate t 98.2 2.2E-06 4.8E-11 82.1 6.3 31 189-219 23-53 (255)
324 cd03259 ABC_Carb_Solutes_like 98.2 8.8E-06 1.9E-10 75.7 10.1 31 189-219 21-51 (213)
325 PF07693 KAP_NTPase: KAP famil 98.2 6.5E-05 1.4E-09 74.3 16.9 90 258-362 163-268 (325)
326 cd03262 ABC_HisP_GlnQ_permease 98.2 1.7E-05 3.6E-10 73.7 11.9 31 189-219 21-51 (213)
327 cd03263 ABC_subfamily_A The AB 98.2 3E-06 6.6E-11 79.2 6.9 31 189-219 23-53 (220)
328 TIGR01818 ntrC nitrogen regula 98.2 3.4E-05 7.3E-10 80.3 15.4 140 195-362 158-327 (463)
329 cd03231 ABC_CcmA_heme_exporter 98.2 1.1E-05 2.5E-10 74.4 10.7 31 189-219 21-51 (201)
330 COG3638 ABC-type phosphate/pho 98.2 3.8E-06 8.2E-11 78.1 7.3 45 189-240 25-69 (258)
331 PRK10908 cell division protein 98.2 3.3E-06 7.1E-11 79.1 7.1 31 189-219 23-53 (222)
332 PLN03210 Resistant to P. syrin 98.2 2.2E-05 4.8E-10 90.6 15.2 30 193-222 206-235 (1153)
333 cd03293 ABC_NrtD_SsuB_transpor 98.2 1.2E-05 2.7E-10 75.2 10.9 31 189-219 25-55 (220)
334 TIGR03740 galliderm_ABC gallid 98.2 1.4E-05 2.9E-10 75.0 11.2 31 189-219 21-51 (223)
335 cd03213 ABCG_EPDR ABCG transpo 98.2 1.1E-05 2.4E-10 74.1 10.3 30 189-218 30-59 (194)
336 PF12774 AAA_6: Hydrolytic ATP 98.2 2.4E-05 5.1E-10 74.0 12.7 130 194-353 32-176 (231)
337 TIGR01189 ccmA heme ABC export 98.2 1.4E-05 3.1E-10 73.5 11.1 31 189-219 21-51 (198)
338 PRK13648 cbiO cobalt transport 98.2 2.3E-06 5.1E-11 82.7 6.1 31 189-219 30-60 (269)
339 COG1618 Predicted nucleotide k 98.2 6E-05 1.3E-09 66.2 14.0 27 195-221 6-32 (179)
340 COG0410 LivF ABC-type branched 98.2 7.2E-06 1.6E-10 76.1 8.8 47 185-239 21-67 (237)
341 cd03265 ABC_DrrA DrrA is the A 98.2 1.2E-05 2.5E-10 75.3 10.5 31 189-219 21-51 (220)
342 cd03218 ABC_YhbG The ABC trans 98.2 1.2E-05 2.6E-10 75.8 10.6 31 189-219 21-51 (232)
343 PRK13548 hmuV hemin importer A 98.2 2.9E-06 6.3E-11 81.6 6.5 31 189-219 23-53 (258)
344 cd03264 ABC_drug_resistance_li 98.2 3.3E-06 7.2E-11 78.4 6.7 30 189-219 21-50 (211)
345 cd03301 ABC_MalK_N The N-termi 98.2 1.2E-05 2.5E-10 74.8 10.3 31 189-219 21-51 (213)
346 PRK11000 maltose/maltodextrin 98.2 4.9E-06 1.1E-10 84.2 8.3 31 189-219 24-54 (369)
347 PRK13546 teichoic acids export 98.2 1.3E-05 2.8E-10 77.3 10.9 31 189-219 45-75 (264)
348 TIGR01288 nodI ATP-binding ABC 98.2 1.1E-05 2.4E-10 79.4 10.5 31 189-219 25-55 (303)
349 PRK10253 iron-enterobactin tra 98.2 3.4E-06 7.3E-11 81.4 6.8 31 189-219 28-58 (265)
350 PRK13643 cbiO cobalt transport 98.2 1.7E-06 3.6E-11 84.6 4.7 31 189-219 27-57 (288)
351 PRK10851 sulfate/thiosulfate t 98.2 5.5E-06 1.2E-10 83.3 8.5 31 189-219 23-53 (353)
352 cd03235 ABC_Metallic_Cations A 98.2 1.4E-05 3.1E-10 74.3 10.7 31 189-219 20-50 (213)
353 cd03282 ABC_MSH4_euk MutS4 hom 98.2 1.7E-05 3.8E-10 73.5 11.2 28 191-218 26-53 (204)
354 TIGR03864 PQQ_ABC_ATP ABC tran 98.2 1.3E-05 2.7E-10 75.9 10.5 31 189-219 22-52 (236)
355 PRK11361 acetoacetate metaboli 98.2 4.2E-05 9.1E-10 79.4 15.3 140 195-362 167-336 (457)
356 PRK13543 cytochrome c biogenes 98.2 1.4E-05 3.1E-10 74.5 10.7 31 189-219 32-62 (214)
357 PRK11607 potG putrescine trans 98.2 5.3E-06 1.2E-10 84.1 8.4 31 189-219 40-70 (377)
358 cd03369 ABCC_NFT1 Domain 2 of 98.2 7.4E-06 1.6E-10 75.9 8.7 31 189-219 29-59 (207)
359 cd03252 ABCC_Hemolysin The ABC 98.2 5.9E-06 1.3E-10 78.2 8.2 31 189-219 23-53 (237)
360 cd01123 Rad51_DMC1_radA Rad51_ 98.2 3E-05 6.4E-10 73.1 12.9 128 193-323 18-169 (235)
361 COG1119 ModF ABC-type molybden 98.2 9E-06 2E-10 76.1 9.0 31 189-219 52-82 (257)
362 PRK09493 glnQ glutamine ABC tr 98.2 3.8E-06 8.3E-11 79.7 6.8 31 189-219 22-52 (240)
363 cd03237 ABC_RNaseL_inhibitor_d 98.2 1.8E-05 4E-10 75.5 11.4 33 187-219 18-50 (246)
364 cd03233 ABC_PDR_domain1 The pl 98.2 1.7E-05 3.7E-10 73.3 10.9 31 189-219 28-58 (202)
365 PRK10247 putative ABC transpor 98.1 4.6E-06 1E-10 78.4 7.0 31 189-219 28-58 (225)
366 PRK14250 phosphate ABC transpo 98.1 3.5E-06 7.5E-11 80.1 6.1 31 189-219 24-54 (241)
367 PRK11176 lipid transporter ATP 98.1 5.6E-06 1.2E-10 88.8 8.4 42 189-237 364-405 (582)
368 COG0396 sufC Cysteine desulfur 98.1 1.8E-05 3.9E-10 73.4 10.5 50 185-240 22-71 (251)
369 PRK11248 tauB taurine transpor 98.1 1.6E-05 3.6E-10 76.2 10.7 31 189-219 22-52 (255)
370 PRK15115 response regulator Gl 98.1 4.8E-05 1E-09 78.8 14.9 140 195-362 158-327 (444)
371 PRK13652 cbiO cobalt transport 98.1 4.7E-06 1E-10 81.0 6.8 31 189-219 25-55 (277)
372 TIGR02688 conserved hypothetic 98.1 2E-05 4.3E-10 79.8 11.3 24 194-217 209-232 (449)
373 TIGR03522 GldA_ABC_ATP gliding 98.1 1.7E-05 3.7E-10 78.0 10.7 31 189-219 23-53 (301)
374 TIGR01184 ntrCD nitrate transp 98.1 2.5E-05 5.5E-10 73.7 11.5 31 189-219 6-36 (230)
375 PRK13640 cbiO cobalt transport 98.1 4.1E-06 8.8E-11 81.6 6.1 31 189-219 28-58 (282)
376 PRK13632 cbiO cobalt transport 98.1 3.8E-06 8.2E-11 81.3 5.8 31 189-219 30-60 (271)
377 PF00493 MCM: MCM2/3/5 family 98.1 3.3E-06 7.2E-11 84.2 5.5 171 160-360 25-224 (331)
378 cd03294 ABC_Pro_Gly_Bertaine T 98.1 2.8E-05 6E-10 75.3 11.8 31 189-219 45-75 (269)
379 TIGR03873 F420-0_ABC_ATP propo 98.1 5.3E-06 1.1E-10 79.6 6.7 31 189-219 22-52 (256)
380 KOG2680 DNA helicase TIP49, TB 98.1 1.6E-05 3.4E-10 76.2 9.6 34 325-359 340-373 (454)
381 PF03969 AFG1_ATPase: AFG1-lik 98.1 1.8E-05 3.9E-10 79.6 10.7 29 192-220 60-88 (362)
382 PRK13638 cbiO cobalt transport 98.1 4E-06 8.8E-11 81.1 5.9 31 189-219 22-52 (271)
383 PRK11614 livF leucine/isoleuci 98.1 4.9E-06 1.1E-10 78.8 6.3 31 189-219 26-56 (237)
384 COG4618 ArpD ABC-type protease 98.1 2.2E-06 4.7E-11 87.3 4.0 84 150-240 291-401 (580)
385 COG1101 PhnK ABC-type uncharac 98.1 1.1E-05 2.4E-10 74.0 8.1 62 189-257 27-88 (263)
386 cd03253 ABCC_ATM1_transporter 98.1 4.4E-05 9.5E-10 72.1 12.7 31 189-219 22-52 (236)
387 cd03298 ABC_ThiQ_thiamine_tran 98.1 2.1E-05 4.6E-10 73.0 10.3 31 189-219 19-49 (211)
388 PRK11247 ssuB aliphatic sulfon 98.1 2.3E-05 5E-10 75.3 10.9 31 189-219 33-63 (257)
389 PRK13644 cbiO cobalt transport 98.1 2.4E-05 5.2E-10 75.9 11.1 31 189-219 23-53 (274)
390 PRK10938 putative molybdenum t 98.1 1.1E-05 2.5E-10 84.6 9.4 31 189-219 24-54 (490)
391 COG4525 TauB ABC-type taurine 98.1 3.1E-05 6.6E-10 70.2 10.6 31 189-219 26-56 (259)
392 cd03244 ABCC_MRP_domain2 Domai 98.1 5E-05 1.1E-09 71.0 12.8 31 189-219 25-55 (221)
393 PRK09544 znuC high-affinity zi 98.1 2E-05 4.3E-10 75.5 10.2 31 189-219 25-55 (251)
394 TIGR03771 anch_rpt_ABC anchore 98.1 3.2E-05 6.9E-10 72.6 11.4 30 190-219 2-31 (223)
395 KOG2228 Origin recognition com 98.1 2.4E-05 5.2E-10 76.2 10.5 170 160-357 25-219 (408)
396 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.1 7.4E-06 1.6E-10 77.5 6.8 31 189-219 24-54 (238)
397 TIGR00968 3a0106s01 sulfate AB 98.1 2.7E-05 5.8E-10 73.8 10.5 31 189-219 21-51 (237)
398 cd03287 ABC_MSH3_euk MutS3 hom 98.1 4E-05 8.6E-10 72.0 11.4 27 191-217 28-54 (222)
399 TIGR02314 ABC_MetN D-methionin 98.1 1.6E-05 3.5E-10 79.6 9.3 31 189-219 26-56 (343)
400 COG2274 SunT ABC-type bacterio 98.1 7.3E-06 1.6E-10 89.0 7.2 44 189-239 494-537 (709)
401 PRK13642 cbiO cobalt transport 98.1 9.2E-06 2E-10 78.9 7.2 31 189-219 28-58 (277)
402 PRK13646 cbiO cobalt transport 98.1 9.5E-06 2.1E-10 79.2 7.3 31 189-219 28-58 (286)
403 COG5271 MDN1 AAA ATPase contai 98.0 1.6E-05 3.4E-10 89.7 9.4 139 194-357 1543-1703(4600)
404 PRK06067 flagellar accessory p 98.0 4.9E-05 1.1E-09 71.8 11.9 26 193-218 24-49 (234)
405 TIGR02142 modC_ABC molybdenum 98.0 6E-06 1.3E-10 83.1 5.9 31 189-219 18-48 (354)
406 PRK11153 metN DL-methionine tr 98.0 2.7E-05 5.8E-10 78.1 10.5 31 189-219 26-56 (343)
407 PRK15439 autoinducer 2 ABC tra 98.0 2E-05 4.3E-10 83.2 10.1 31 189-219 32-62 (510)
408 PRK09361 radB DNA repair and r 98.0 4.5E-05 9.8E-10 71.6 11.5 39 193-237 22-60 (225)
409 PRK13631 cbiO cobalt transport 98.0 6.2E-06 1.3E-10 81.8 5.8 31 189-219 47-77 (320)
410 PRK13651 cobalt transporter AT 98.0 9E-06 1.9E-10 80.2 6.9 31 189-219 28-58 (305)
411 PRK13657 cyclic beta-1,2-gluca 98.0 8.9E-06 1.9E-10 87.4 7.4 42 189-237 356-397 (588)
412 TIGR00767 rho transcription te 98.0 4.9E-05 1.1E-09 76.7 12.1 90 189-283 163-271 (415)
413 TIGR03796 NHPM_micro_ABC1 NHPM 98.0 8.2E-06 1.8E-10 89.6 7.2 43 189-238 500-542 (710)
414 PRK03695 vitamin B12-transport 98.0 7.3E-06 1.6E-10 78.3 5.9 30 189-218 17-46 (248)
415 COG3267 ExeA Type II secretory 98.0 0.00025 5.5E-09 66.8 15.9 169 195-386 52-237 (269)
416 TIGR02868 CydC thiol reductant 98.0 5.4E-06 1.2E-10 87.9 5.5 41 189-236 356-396 (529)
417 COG4181 Predicted ABC-type tra 98.0 5.3E-05 1.2E-09 67.3 10.7 44 189-239 31-74 (228)
418 cd03267 ABC_NatA_like Similar 98.0 3.6E-05 7.8E-10 72.9 10.6 31 189-219 42-72 (236)
419 PRK13633 cobalt transporter AT 98.0 8E-06 1.7E-10 79.5 6.1 31 189-219 31-61 (280)
420 KOG0478 DNA replication licens 98.0 6.7E-05 1.5E-09 78.9 13.0 135 195-357 463-626 (804)
421 TIGR02857 CydD thiol reductant 98.0 1.1E-05 2.4E-10 85.5 7.6 31 189-219 343-373 (529)
422 COG3840 ThiQ ABC-type thiamine 98.0 1.8E-05 4E-10 70.9 7.6 44 190-240 21-64 (231)
423 PRK13639 cbiO cobalt transport 98.0 4.1E-05 8.9E-10 74.3 10.9 31 189-219 23-53 (275)
424 cd03250 ABCC_MRP_domain1 Domai 98.0 9E-05 2E-09 68.4 12.7 32 189-220 26-57 (204)
425 PRK13636 cbiO cobalt transport 98.0 9.1E-06 2E-10 79.2 6.2 31 189-219 27-57 (283)
426 TIGR02203 MsbA_lipidA lipid A 98.0 1.5E-05 3.3E-10 85.2 8.3 41 189-236 353-393 (571)
427 COG3604 FhlA Transcriptional r 98.0 3E-05 6.5E-10 79.1 9.8 172 157-363 221-417 (550)
428 PRK15056 manganese/iron transp 98.0 4.7E-05 1E-09 73.7 10.9 31 189-219 28-58 (272)
429 smart00534 MUTSac ATPase domai 98.0 7.9E-05 1.7E-09 68.0 11.8 21 197-217 2-22 (185)
430 TIGR02204 MsbA_rel ABC transpo 98.0 1.7E-05 3.6E-10 85.0 8.4 31 189-219 361-391 (576)
431 PRK10070 glycine betaine trans 98.0 3.6E-05 7.9E-10 78.5 10.4 31 189-219 49-79 (400)
432 cd03300 ABC_PotA_N PotA is an 98.0 4.4E-05 9.6E-10 72.0 10.4 31 189-219 21-51 (232)
433 TIGR03415 ABC_choXWV_ATP choli 98.0 2.1E-05 4.5E-10 79.8 8.6 31 189-219 45-75 (382)
434 PRK11174 cysteine/glutathione 98.0 1.1E-05 2.4E-10 86.6 7.0 30 189-218 371-400 (588)
435 PRK10790 putative multidrug tr 98.0 1.3E-05 2.8E-10 86.2 7.5 43 189-238 362-404 (592)
436 PRK13545 tagH teichoic acids e 98.0 4.2E-05 9.2E-10 79.9 10.7 31 189-219 45-75 (549)
437 TIGR00958 3a01208 Conjugate Tr 98.0 1.5E-05 3.1E-10 87.6 7.7 42 189-237 502-543 (711)
438 TIGR03375 type_I_sec_LssB type 98.0 1.2E-05 2.6E-10 88.0 7.0 42 189-237 486-527 (694)
439 COG0411 LivG ABC-type branched 98.0 1.2E-05 2.7E-10 75.1 5.8 44 189-239 25-68 (250)
440 TIGR03797 NHPM_micro_ABC2 NHPM 98.0 1.2E-05 2.7E-10 87.9 6.9 43 189-238 474-516 (686)
441 PRK04296 thymidine kinase; Pro 98.0 7.3E-05 1.6E-09 68.5 10.8 26 194-219 2-27 (190)
442 COG1135 AbcC ABC-type metal io 98.0 1.1E-05 2.3E-10 77.9 5.4 44 189-239 27-70 (339)
443 TIGR02012 tigrfam_recA protein 98.0 6.9E-05 1.5E-09 74.0 11.3 125 185-323 51-191 (321)
444 PRK07261 topology modulation p 97.9 6.3E-05 1.4E-09 67.8 10.1 27 196-222 2-28 (171)
445 COG5271 MDN1 AAA ATPase contai 97.9 0.00013 2.8E-09 82.8 14.0 133 197-357 891-1047(4600)
446 cd01124 KaiC KaiC is a circadi 97.9 0.00014 3.1E-09 65.7 12.2 22 197-218 2-23 (187)
447 PRK10789 putative multidrug tr 97.9 2.2E-05 4.8E-10 84.0 7.8 31 189-219 336-366 (569)
448 PRK15455 PrkA family serine pr 97.9 1.2E-05 2.7E-10 84.0 5.6 56 156-219 73-128 (644)
449 TIGR01842 type_I_sec_PrtD type 97.9 1.9E-05 4.2E-10 84.0 7.3 31 189-219 339-369 (544)
450 COG4615 PvdE ABC-type sideroph 97.9 7.9E-05 1.7E-09 74.1 10.8 45 189-240 344-388 (546)
451 cd01394 radB RadB. The archaea 97.9 9.3E-05 2E-09 69.0 11.0 27 193-219 18-44 (218)
452 TIGR01193 bacteriocin_ABC ABC- 97.9 1.9E-05 4.2E-10 86.6 7.4 42 189-237 495-536 (708)
453 PRK13695 putative NTPase; Prov 97.9 0.00015 3.2E-09 65.3 12.0 24 196-219 2-25 (174)
454 COG4152 ABC-type uncharacteriz 97.9 6.7E-05 1.5E-09 70.2 9.7 44 189-239 23-66 (300)
455 COG4133 CcmA ABC-type transpor 97.9 6.3E-05 1.4E-09 67.8 9.2 41 189-236 23-63 (209)
456 PF13191 AAA_16: AAA ATPase do 97.9 3.5E-05 7.7E-10 69.3 7.9 50 161-221 2-51 (185)
457 PRK08533 flagellar accessory p 97.9 0.00012 2.6E-09 69.2 11.6 25 193-217 23-47 (230)
458 COG3283 TyrR Transcriptional r 97.9 0.00015 3.2E-09 71.3 12.1 166 155-362 200-392 (511)
459 PRK15177 Vi polysaccharide exp 97.9 5.2E-05 1.1E-09 70.7 8.9 31 189-219 8-38 (213)
460 PRK09473 oppD oligopeptide tra 97.9 4.6E-06 1E-10 83.1 1.9 32 189-220 37-68 (330)
461 cd03236 ABC_RNaseL_inhibitor_d 97.9 0.0001 2.2E-09 70.8 11.1 30 191-220 23-52 (255)
462 PRK10762 D-ribose transporter 97.9 6.2E-05 1.4E-09 79.3 10.5 31 189-219 25-55 (501)
463 PRK11308 dppF dipeptide transp 97.9 5.3E-05 1.2E-09 75.4 9.4 31 189-219 36-66 (327)
464 PRK10982 galactose/methyl gala 97.9 5.4E-05 1.2E-09 79.5 9.9 31 189-219 19-49 (491)
465 cd01121 Sms Sms (bacterial rad 97.9 6.9E-05 1.5E-09 75.7 10.1 77 194-281 82-172 (372)
466 PRK12608 transcription termina 97.9 0.00013 2.8E-09 73.1 11.7 96 191-291 130-245 (380)
467 cd03284 ABC_MutS1 MutS1 homolo 97.9 0.00014 3.1E-09 68.0 11.4 22 195-216 31-52 (216)
468 PRK09700 D-allose transporter 97.9 4.8E-05 1E-09 80.3 9.2 31 189-219 26-56 (510)
469 PRK11288 araG L-arabinose tran 97.9 6.6E-05 1.4E-09 79.1 10.2 31 189-219 274-304 (501)
470 PF06309 Torsin: Torsin; Inte 97.9 0.00013 2.8E-09 61.9 9.9 54 158-218 24-77 (127)
471 TIGR01846 type_I_sec_HlyB type 97.9 2.8E-05 6.1E-10 85.1 7.6 43 189-238 478-520 (694)
472 PF00931 NB-ARC: NB-ARC domain 97.9 0.00015 3.2E-09 70.3 11.8 139 194-359 19-172 (287)
473 cd00983 recA RecA is a bacter 97.9 0.0001 2.2E-09 72.9 10.5 120 194-322 55-190 (325)
474 cd03227 ABC_Class2 ABC-type Cl 97.8 0.00034 7.3E-09 62.3 13.0 28 194-221 21-48 (162)
475 PRK15079 oligopeptide ABC tran 97.8 6.6E-05 1.4E-09 74.9 9.2 31 189-219 42-72 (331)
476 TIGR01192 chvA glucan exporter 97.8 3.2E-05 6.9E-10 83.1 7.5 31 189-219 356-386 (585)
477 TIGR02858 spore_III_AA stage I 97.8 5.5E-05 1.2E-09 73.1 8.3 26 195-220 112-137 (270)
478 PRK11160 cysteine/glutathione 97.8 3.7E-05 8.1E-10 82.4 7.9 42 189-237 361-402 (574)
479 TIGR01194 cyc_pep_trnsptr cycl 97.8 3.9E-05 8.4E-10 81.9 7.9 43 189-238 363-405 (555)
480 PTZ00265 multidrug resistance 97.8 3.5E-05 7.6E-10 90.4 8.1 32 189-220 1189-1220(1466)
481 PF13207 AAA_17: AAA domain; P 97.8 1.6E-05 3.5E-10 66.7 4.0 26 196-221 1-26 (121)
482 PRK11022 dppD dipeptide transp 97.8 9.3E-05 2E-09 73.7 9.9 31 189-219 28-58 (326)
483 KOG0058 Peptide exporter, ABC 97.8 4.3E-05 9.4E-10 81.1 7.8 44 189-239 489-532 (716)
484 cd01393 recA_like RecA is a b 97.8 0.00015 3.3E-09 67.9 10.8 127 193-322 18-167 (226)
485 PRK13549 xylose transporter AT 97.8 7.8E-05 1.7E-09 78.7 9.6 31 189-219 26-56 (506)
486 PHA00729 NTP-binding motif con 97.8 2.5E-05 5.3E-10 73.1 5.1 24 196-219 19-42 (226)
487 COG1241 MCM2 Predicted ATPase 97.8 3.5E-05 7.5E-10 82.6 6.8 167 158-359 285-485 (682)
488 COG1123 ATPase components of v 97.8 1.4E-05 3E-10 83.2 3.7 43 189-238 312-354 (539)
489 PRK11823 DNA repair protein Ra 97.8 9.1E-05 2E-09 76.8 9.8 77 194-281 80-170 (446)
490 PRK10762 D-ribose transporter 97.8 8.1E-05 1.8E-09 78.4 9.6 31 189-219 273-303 (501)
491 cd03286 ABC_MSH6_euk MutS6 hom 97.8 0.00026 5.7E-09 66.3 11.8 115 193-323 29-153 (218)
492 PRK10522 multidrug transporter 97.8 4.9E-05 1.1E-09 81.0 7.8 43 189-238 344-386 (547)
493 COG1132 MdlB ABC-type multidru 97.8 2.7E-05 5.8E-10 83.3 5.8 43 189-238 350-392 (567)
494 PRK10365 transcriptional regul 97.8 0.00024 5.3E-09 73.3 12.7 142 194-362 162-332 (441)
495 KOG0057 Mitochondrial Fe/S clu 97.8 6.5E-05 1.4E-09 77.5 8.0 43 189-239 373-415 (591)
496 PRK08118 topology modulation p 97.8 5.4E-05 1.2E-09 67.9 6.7 27 196-222 3-29 (167)
497 COG0488 Uup ATPase components 97.8 0.00018 4E-09 75.8 11.4 33 189-221 343-375 (530)
498 PLN03211 ABC transporter G-25; 97.8 0.00014 3E-09 79.0 10.9 31 189-219 89-119 (659)
499 KOG0055 Multidrug/pheromone ex 97.8 5.3E-05 1.1E-09 85.0 7.6 44 189-239 374-417 (1228)
500 PRK15064 ABC transporter ATP-b 97.8 0.00014 3E-09 77.3 10.6 31 189-219 22-52 (530)
No 1
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-65 Score=480.51 Aligned_cols=334 Identities=60% Similarity=0.895 Sum_probs=308.1
Q ss_pred CCcccCcceEEEEEEecCC---CcccHHHHHHHHHHHHHhcCCccCCCCCCCCCCChhhhcccceEEEEeCCCcccCCcc
Q 014376 35 PLLAEDKFLVSVEVCLKLS---STARIDDVRLAVERMLEKRSLSYVDGPIPIPIDDPFLVENVQRICVSDTDEWVKNHDI 111 (426)
Q Consensus 35 ~~~~~~~~~~~~e~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (426)
|-+.... ++|||||+|.+ |+++.++++..+++++.+....+ .+..+++.++.|+..+|.++++++......+...
T Consensus 13 ~~L~~s~-~v~vevcqk~~~~~s~a~~~~~~~~l~~~~~~~~~~~-~~~~~~~~d~~~~~~~v~~~c~l~~~~~~kn~qp 90 (423)
T KOG0744|consen 13 PCLFNSL-TVHVEVCQKGSSHVSTARNEDVEIALKAHIDSALKET-NEVDLYPMDSVFLTINVQSVCILRDQDELKNGQP 90 (423)
T ss_pred chhhhCC-ceEEEEEecCCchhhHHHHHHHHHHHHHHHHHHhhcc-CcceeecCCcHHHHhhhceeEEeecchhccCCCc
Confidence 3454444 99999999998 78899999999999998765323 3344667899999999999999998877778888
Q ss_pred eeeccccceeEEEecCCCCCcc--c--ccCCCCccccccccccccccchhhhhhhchhhHHHHHHHHHHHHHHHhhcCCC
Q 014376 112 LLFWQVKPVVQVFQLSEEGPCE--E--LSGDGQLSSFNEWILPAKEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVN 187 (426)
Q Consensus 112 ~~~~~~~~~v~~~~l~~~~~~~--~--~~~~~~~~~~~~~~lp~~~~~~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~ 187 (426)
+.+......+|+|++.+++|.- + ..+.+.....++|.||..+|+|+||+|+|+.++|++|+.|+..+.+|++++++
T Consensus 91 ls~~~~k~~lh~f~~~~d~~l~~n~~~~d~~esii~an~w~LPa~eF~glWEsLiyds~lK~~ll~Ya~s~l~fsek~vn 170 (423)
T KOG0744|consen 91 LSTEFDKIDLHLFELETDGPLVSNEDIPDGKESIIAANHWYLPAAEFDGLWESLIYDSNLKERLLSYAASALLFSEKKVN 170 (423)
T ss_pred ccccccceeeEEEecccCCCcccCCCCCcchhhhhhhhheeccchhhhhhHHHHhhcccHHHHHHHHHHHHHHHHhcCCC
Confidence 8888899999999999998832 2 22445667889999999999999999999999999999999999999999999
Q ss_pred CccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccC
Q 014376 188 PFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENN 267 (426)
Q Consensus 188 ~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~ 267 (426)
+..|.|||.+|||||||||||+|||++|+++.++..+.|+++.++++|+|++++|||+|++|.+.++|+++.+++++.+.
T Consensus 171 tnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~ 250 (423)
T KOG0744|consen 171 TNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGN 250 (423)
T ss_pred CceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHH
Q 014376 268 LVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQ 347 (426)
Q Consensus 268 ~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~ 347 (426)
.++++|||+++++..|.+..|++||++++|++|++|+++|++++++|+++++|+|..+.+|.||++|.|++.|+|+|+..
T Consensus 251 lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ 330 (423)
T KOG0744|consen 251 LVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAE 330 (423)
T ss_pred EEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhhHhhheeecCCccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCccccCC
Q 014376 348 ARYEILRSCLQELIRTGIISNFQ 370 (426)
Q Consensus 348 ~r~~Il~~~l~~l~~~~~i~~~~ 370 (426)
.+++|++.|+++++..|++...+
T Consensus 331 ai~~IlkscieEL~~~gIi~~~~ 353 (423)
T KOG0744|consen 331 AIYEILKSCIEELISSGIILFHQ 353 (423)
T ss_pred HHHHHHHHHHHHHHhcCeeeeec
Confidence 99999999999999999996654
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-36 Score=286.36 Aligned_cols=219 Identities=27% Similarity=0.389 Sum_probs=198.0
Q ss_pred ccccchhhhhhhchhhHHHHHHHHHH----HHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCC
Q 014376 151 AKEFDGMWESLIYESGLKQRLLHYAA----SALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRY 226 (426)
Q Consensus 151 ~~~~~~~~~~lv~~~~~k~~L~~~~~----~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~ 226 (426)
...++-.++++-|.++..+.|.+.+. .+.+|.+.|++| +++||||||||||||.||||+|+..+..
T Consensus 143 ~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~P-----PKGVLLYGPPGTGKTLLAkAVA~~T~At----- 212 (406)
T COG1222 143 EEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDP-----PKGVLLYGPPGTGKTLLAKAVANQTDAT----- 212 (406)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCC-----CCceEeeCCCCCcHHHHHHHHHhccCce-----
Confidence 34556678899999999999998876 466899999988 8999999999999999999999998654
Q ss_pred CcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHh
Q 014376 227 PQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQM 306 (426)
Q Consensus 227 ~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l 306 (426)
++.+.+++|..+|+|+..+.++.+|..|++ ++|+|+||||||.++.+|.+...+++ ...+|++-+||++|
T Consensus 213 ----FIrvvgSElVqKYiGEGaRlVRelF~lAre-----kaPsIIFiDEIDAIg~kR~d~~t~gD-rEVQRTmleLL~ql 282 (406)
T COG1222 213 ----FIRVVGSELVQKYIGEGARLVRELFELARE-----KAPSIIFIDEIDAIGAKRFDSGTSGD-REVQRTMLELLNQL 282 (406)
T ss_pred ----EEEeccHHHHHHHhccchHHHHHHHHHHhh-----cCCeEEEEechhhhhcccccCCCCch-HHHHHHHHHHHHhc
Confidence 499999999999999999999999999998 79999999999999999987665554 45678899999999
Q ss_pred hhhcCCCcEEEEEEeCCCCcCCHHHh--cccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHh
Q 014376 307 DKLKSSPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILK 384 (426)
Q Consensus 307 d~l~~~~~viVi~TtN~~~~ld~al~--~R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~ 384 (426)
|++...+++-||++||+++.||||++ +|||++|+||+|+.+.|.+||+-+..++. .....++..++..+
T Consensus 283 DGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~---------l~~dvd~e~la~~~ 353 (406)
T COG1222 283 DGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMN---------LADDVDLELLARLT 353 (406)
T ss_pred cCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhcc---------CccCcCHHHHHHhc
Confidence 99999999999999999999999999 79999999999999999999999998875 46677999999999
Q ss_pred hccCchHHHHhhhh
Q 014376 385 EKLSNPDIQEADRS 398 (426)
Q Consensus 385 ~~~s~~di~~~~~~ 398 (426)
+|+|++|++..|..
T Consensus 354 ~g~sGAdlkaictE 367 (406)
T COG1222 354 EGFSGADLKAICTE 367 (406)
T ss_pred CCCchHHHHHHHHH
Confidence 99999999988753
No 3
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-35 Score=300.69 Aligned_cols=213 Identities=33% Similarity=0.508 Sum_probs=192.2
Q ss_pred cchhhhhhhchhhHHHHHHHHHHHHH----HHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcc
Q 014376 154 FDGMWESLIYESGLKQRLLHYAASAL----MFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQC 229 (426)
Q Consensus 154 ~~~~~~~lv~~~~~k~~L~~~~~~~~----~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~ 229 (426)
+.-.|+++.|.+++|..|++.+.++. .|.+.|++| +++||||||||||||++||++|.+.+.+|
T Consensus 429 p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~p-----pkGVLlyGPPGC~KT~lAkalAne~~~nF------- 496 (693)
T KOG0730|consen 429 PNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISP-----PKGVLLYGPPGCGKTLLAKALANEAGMNF------- 496 (693)
T ss_pred CCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCC-----CceEEEECCCCcchHHHHHHHhhhhcCCe-------
Confidence 33579999999999999999887765 566678776 89999999999999999999999997766
Q ss_pred eEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhh
Q 014376 230 QLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL 309 (426)
Q Consensus 230 ~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l 309 (426)
+.+.+.+++++|+|++++.++++|++++.. .|+|+|+||||++...|.+..+ ....|++++||++||++
T Consensus 497 --lsvkgpEL~sk~vGeSEr~ir~iF~kAR~~-----aP~IiFfDEiDsi~~~R~g~~~----~v~~RVlsqLLtEmDG~ 565 (693)
T KOG0730|consen 497 --LSVKGPELFSKYVGESERAIREVFRKARQV-----APCIIFFDEIDALAGSRGGSSS----GVTDRVLSQLLTEMDGL 565 (693)
T ss_pred --eeccCHHHHHHhcCchHHHHHHHHHHHhhc-----CCeEEehhhHHhHhhccCCCcc----chHHHHHHHHHHHcccc
Confidence 999999999999999999999999999984 8999999999999999863222 56679999999999999
Q ss_pred cCCCcEEEEEEeCCCCcCCHHHhc--ccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhcc
Q 014376 310 KSSPNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKL 387 (426)
Q Consensus 310 ~~~~~viVi~TtN~~~~ld~al~~--R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~ 387 (426)
...++++|+++||+++.||+|+++ |||..+|+|+|+.+.|.+|++.+++++. .....++..++..++||
T Consensus 566 e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp---------~~~~vdl~~La~~T~g~ 636 (693)
T KOG0730|consen 566 EALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMP---------FSEDVDLEELAQATEGY 636 (693)
T ss_pred cccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCC---------CCccccHHHHHHHhccC
Confidence 999999999999999999999995 9999999999999999999999999874 34457899999999999
Q ss_pred CchHHHHhhhh
Q 014376 388 SNPDIQEADRS 398 (426)
Q Consensus 388 s~~di~~~~~~ 398 (426)
|++|+.+.|+.
T Consensus 637 SGAel~~lCq~ 647 (693)
T KOG0730|consen 637 SGAEIVAVCQE 647 (693)
T ss_pred ChHHHHHHHHH
Confidence 99999999865
No 4
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-33 Score=269.94 Aligned_cols=216 Identities=32% Similarity=0.452 Sum_probs=191.7
Q ss_pred ccchhhhhhhchhhHHHHHHHHHHHHHHHhh--cCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcce
Q 014376 153 EFDGMWESLIYESGLKQRLLHYAASALMFAE--KGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQ 230 (426)
Q Consensus 153 ~~~~~~~~lv~~~~~k~~L~~~~~~~~~~~~--~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~ 230 (426)
.+.--|+++.|..++|+.|.+.+..++++++ .|+.. +| ++||++||||||||.||||+|.+++..|
T Consensus 206 np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Girr---PW-kgvLm~GPPGTGKTlLAKAvATEc~tTF-------- 273 (491)
T KOG0738|consen 206 NPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRR---PW-KGVLMVGPPGTGKTLLAKAVATECGTTF-------- 273 (491)
T ss_pred CCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhccc---cc-ceeeeeCCCCCcHHHHHHHHHHhhcCeE--------
Confidence 3446799999999999999999999988876 34321 23 7899999999999999999999997655
Q ss_pred EEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc
Q 014376 231 LVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK 310 (426)
Q Consensus 231 ~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~ 310 (426)
+.|+++.+.+||-|++++.++-+|+.++.+ +|.+|||||||+|..+|.. .+|...+.|+.++||.+||++.
T Consensus 274 -FNVSsstltSKwRGeSEKlvRlLFemARfy-----APStIFiDEIDslcs~RG~---s~EHEaSRRvKsELLvQmDG~~ 344 (491)
T KOG0738|consen 274 -FNVSSSTLTSKWRGESEKLVRLLFEMARFY-----APSTIFIDEIDSLCSQRGG---SSEHEASRRVKSELLVQMDGVQ 344 (491)
T ss_pred -EEechhhhhhhhccchHHHHHHHHHHHHHh-----CCceeehhhHHHHHhcCCC---ccchhHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999985 8999999999999998864 3566788999999999999885
Q ss_pred CC----CcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhc
Q 014376 311 SS----PNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEK 386 (426)
Q Consensus 311 ~~----~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~ 386 (426)
.. ..|+|+++||.|+.||.||++||...|++|.|+.+.|..+++..+.... ..+..++..+++.++|
T Consensus 345 ~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~---------~~~~~~~~~lae~~eG 415 (491)
T KOG0738|consen 345 GTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVE---------LDDPVNLEDLAERSEG 415 (491)
T ss_pred cccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhcccc---------CCCCccHHHHHHHhcC
Confidence 43 3499999999999999999999999999999999999999999998764 4567789999999999
Q ss_pred cCchHHHHhhhh
Q 014376 387 LSNPDIQEADRS 398 (426)
Q Consensus 387 ~s~~di~~~~~~ 398 (426)
||++||...|+.
T Consensus 416 ySGaDI~nvCre 427 (491)
T KOG0738|consen 416 YSGADITNVCRE 427 (491)
T ss_pred CChHHHHHHHHH
Confidence 999999999875
No 5
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-33 Score=282.57 Aligned_cols=216 Identities=28% Similarity=0.404 Sum_probs=191.8
Q ss_pred ccchhhhhhhchhhHHHHHHHHHHHH----HHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCc
Q 014376 153 EFDGMWESLIYESGLKQRLLHYAASA----LMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQ 228 (426)
Q Consensus 153 ~~~~~~~~lv~~~~~k~~L~~~~~~~----~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~ 228 (426)
.++-.|+++-+.++++.+|..++..+ ..|...|++. +.+|||+||||||||.||||+|++.+..|
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~-----PsGvLL~GPPGCGKTLlAKAVANEag~NF------ 573 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDA-----PSGVLLCGPPGCGKTLLAKAVANEAGANF------ 573 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCC-----CCceEEeCCCCccHHHHHHHHhhhccCce------
Confidence 34557999999999999988887654 5677788876 78999999999999999999999998776
Q ss_pred ceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhh
Q 014376 229 CQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK 308 (426)
Q Consensus 229 ~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~ 308 (426)
+.+.+.+|+++|+||+++.++++|++++. ..|||+|+||+|.|.+.|.... .+.+.|++|+||+.||+
T Consensus 574 ---isVKGPELlNkYVGESErAVR~vFqRAR~-----saPCVIFFDEiDaL~p~R~~~~----s~~s~RvvNqLLtElDG 641 (802)
T KOG0733|consen 574 ---ISVKGPELLNKYVGESERAVRQVFQRARA-----SAPCVIFFDEIDALVPRRSDEG----SSVSSRVVNQLLTELDG 641 (802)
T ss_pred ---EeecCHHHHHHHhhhHHHHHHHHHHHhhc-----CCCeEEEecchhhcCcccCCCC----chhHHHHHHHHHHHhcc
Confidence 99999999999999999999999999998 6999999999999999986533 45668999999999999
Q ss_pred hcCCCcEEEEEEeCCCCcCCHHHh--cccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhh-
Q 014376 309 LKSSPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKE- 385 (426)
Q Consensus 309 l~~~~~viVi~TtN~~~~ld~al~--~R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~- 385 (426)
+....++.||++||+|+.+|+|++ +|||..+|++.|+.++|.+||+...+.. + .-...+.++..++..++
T Consensus 642 l~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~---k----~pl~~dVdl~eia~~~~c 714 (802)
T KOG0733|consen 642 LEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNT---K----PPLSSDVDLDEIARNTKC 714 (802)
T ss_pred cccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccC---C----CCCCcccCHHHHhhcccc
Confidence 999999999999999999999999 7999999999999999999999998851 1 12456788999998877
Q ss_pred -ccCchHHHHhhhh
Q 014376 386 -KLSNPDIQEADRS 398 (426)
Q Consensus 386 -~~s~~di~~~~~~ 398 (426)
||+++|+..+++.
T Consensus 715 ~gftGADLaaLvre 728 (802)
T KOG0733|consen 715 EGFTGADLAALVRE 728 (802)
T ss_pred cCCchhhHHHHHHH
Confidence 9999999888764
No 6
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=6.1e-33 Score=255.60 Aligned_cols=208 Identities=25% Similarity=0.375 Sum_probs=184.7
Q ss_pred hhhhhhhchhhHHHH---HHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEE
Q 014376 156 GMWESLIYESGLKQR---LLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLV 232 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~---L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i 232 (426)
-.+++++|+++.|++ +.+|+.++..|.++- +++||+|||||||||++||++|++...++ +
T Consensus 118 it~ddViGqEeAK~kcrli~~yLenPe~Fg~WA--------PknVLFyGppGTGKTm~Akalane~kvp~---------l 180 (368)
T COG1223 118 ITLDDVIGQEEAKRKCRLIMEYLENPERFGDWA--------PKNVLFYGPPGTGKTMMAKALANEAKVPL---------L 180 (368)
T ss_pred ccHhhhhchHHHHHHHHHHHHHhhChHHhcccC--------cceeEEECCCCccHHHHHHHHhcccCCce---------E
Confidence 468899999999876 678999999998765 57899999999999999999999997766 9
Q ss_pred EEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCC
Q 014376 233 EVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS 312 (426)
Q Consensus 233 ~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~ 312 (426)
.+++.++.+.++|+..+.+.++|+.+++. +|||+||||+|.++-.|.-+ ....+...++|+||+.||+++.+
T Consensus 181 ~vkat~liGehVGdgar~Ihely~rA~~~-----aPcivFiDE~DAiaLdRryQ---elRGDVsEiVNALLTelDgi~en 252 (368)
T COG1223 181 LVKATELIGEHVGDGARRIHELYERARKA-----APCIVFIDELDAIALDRRYQ---ELRGDVSEIVNALLTELDGIKEN 252 (368)
T ss_pred EechHHHHHHHhhhHHHHHHHHHHHHHhc-----CCeEEEehhhhhhhhhhhHH---HhcccHHHHHHHHHHhccCcccC
Confidence 99999999999999999999999999984 99999999999998665332 12345678999999999999999
Q ss_pred CcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhccCchHH
Q 014376 313 PNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDI 392 (426)
Q Consensus 313 ~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~s~~di 392 (426)
.+++.|++||.++.+|+++++||...|+|..|+.++|.+|++.+++++. ..-+.++..++..+.|+|+.||
T Consensus 253 eGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~P---------lpv~~~~~~~~~~t~g~SgRdi 323 (368)
T COG1223 253 EGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFP---------LPVDADLRYLAAKTKGMSGRDI 323 (368)
T ss_pred CceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCC---------CccccCHHHHHHHhCCCCchhH
Confidence 9999999999999999999999999999999999999999999999874 3344568999999999999999
Q ss_pred HHhhh
Q 014376 393 QEADR 397 (426)
Q Consensus 393 ~~~~~ 397 (426)
++..-
T Consensus 324 kekvl 328 (368)
T COG1223 324 KEKVL 328 (368)
T ss_pred HHHHH
Confidence 88743
No 7
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.6e-31 Score=266.61 Aligned_cols=211 Identities=30% Similarity=0.413 Sum_probs=186.3
Q ss_pred hhhhhhhchhhHHHHHHHH---HHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEE
Q 014376 156 GMWESLIYESGLKQRLLHY---AASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLV 232 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~---~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i 232 (426)
.-|+++-|.+.....|.+. +..+..|...|+.| ++++|||||||||||+||+++|++++.+| +
T Consensus 187 v~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~P-----prGvLlHGPPGCGKT~lA~AiAgel~vPf---------~ 252 (802)
T KOG0733|consen 187 VSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRP-----PRGVLLHGPPGCGKTSLANAIAGELGVPF---------L 252 (802)
T ss_pred cchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCC-----CCceeeeCCCCccHHHHHHHHhhhcCCce---------E
Confidence 3688888888876665554 44567788899988 89999999999999999999999999888 9
Q ss_pred EEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCC
Q 014376 233 EVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS 312 (426)
Q Consensus 233 ~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~ 312 (426)
.+++.++.+.+.|++++.++.+|++++. ..|||+||||||.++++|..+. ....+|++.+|++.||++...
T Consensus 253 ~isApeivSGvSGESEkkiRelF~~A~~-----~aPcivFiDeIDAI~pkRe~aq----reMErRiVaQLlt~mD~l~~~ 323 (802)
T KOG0733|consen 253 SISAPEIVSGVSGESEKKIRELFDQAKS-----NAPCIVFIDEIDAITPKREEAQ----REMERRIVAQLLTSMDELSNE 323 (802)
T ss_pred eecchhhhcccCcccHHHHHHHHHHHhc-----cCCeEEEeecccccccchhhHH----HHHHHHHHHHHHHhhhccccc
Confidence 9999999999999999999999999998 4999999999999999997532 345579999999999998655
Q ss_pred ----CcEEEEEEeCCCCcCCHHHh--cccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhc
Q 014376 313 ----PNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEK 386 (426)
Q Consensus 313 ----~~viVi~TtN~~~~ld~al~--~R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~ 386 (426)
..++||++||+|+.+|++++ +|||+.|.++.|+..+|.+||+..++.+.- ....+...++.++.|
T Consensus 324 ~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl---------~g~~d~~qlA~lTPG 394 (802)
T KOG0733|consen 324 KTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRL---------SGDFDFKQLAKLTPG 394 (802)
T ss_pred ccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCC---------CCCcCHHHHHhcCCC
Confidence 56999999999999999999 799999999999999999999999988753 345688999999999
Q ss_pred cCchHHHHhhhh
Q 014376 387 LSNPDIQEADRS 398 (426)
Q Consensus 387 ~s~~di~~~~~~ 398 (426)
|.++|+...|..
T Consensus 395 fVGADL~AL~~~ 406 (802)
T KOG0733|consen 395 FVGADLMALCRE 406 (802)
T ss_pred ccchhHHHHHHH
Confidence 999999888654
No 8
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9e-32 Score=251.97 Aligned_cols=212 Identities=31% Similarity=0.482 Sum_probs=184.1
Q ss_pred cccchhhhhhhchhhHHHHHHHHHHHHHHHhhc--C-CCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCc
Q 014376 152 KEFDGMWESLIYESGLKQRLLHYAASALMFAEK--G-VNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQ 228 (426)
Q Consensus 152 ~~~~~~~~~lv~~~~~k~~L~~~~~~~~~~~~~--g-~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~ 228 (426)
..+.--|+++.|.+..|+.|.+.+.-++.|++. | -.| | +++|||||||||||.||+++|.+.+.
T Consensus 126 EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~P----w-rgiLLyGPPGTGKSYLAKAVATEAnS-------- 192 (439)
T KOG0739|consen 126 EKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKP----W-RGILLYGPPGTGKSYLAKAVATEANS-------- 192 (439)
T ss_pred cCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCc----c-eeEEEeCCCCCcHHHHHHHHHhhcCC--------
Confidence 344558999999999999999999888877762 2 222 2 78999999999999999999999864
Q ss_pred ceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhh
Q 014376 229 CQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK 308 (426)
Q Consensus 229 ~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~ 308 (426)
.++.+++++|.++|.|++++.+..+|+.+++ +.|.|+||||||++...| +++|...++|+..+||.+|++
T Consensus 193 -TFFSvSSSDLvSKWmGESEkLVknLFemARe-----~kPSIIFiDEiDslcg~r----~enEseasRRIKTEfLVQMqG 262 (439)
T KOG0739|consen 193 -TFFSVSSSDLVSKWMGESEKLVKNLFEMARE-----NKPSIIFIDEIDSLCGSR----SENESEASRRIKTEFLVQMQG 262 (439)
T ss_pred -ceEEeehHHHHHHHhccHHHHHHHHHHHHHh-----cCCcEEEeehhhhhccCC----CCCchHHHHHHHHHHHHhhhc
Confidence 4499999999999999999999999999998 699999999999998876 467777889999999999998
Q ss_pred hc-CCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhcc
Q 014376 309 LK-SSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKL 387 (426)
Q Consensus 309 l~-~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~ 387 (426)
.- ...+++|+++||.|+.+|.|+++||...||+|.|+..+|..+++.++.... ......++..++.+++||
T Consensus 263 VG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp--------~~LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 263 VGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTP--------HVLTEQDFKELARKTEGY 334 (439)
T ss_pred cccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCc--------cccchhhHHHHHhhcCCC
Confidence 74 346799999999999999999999999999999999999999998876532 234556788999999999
Q ss_pred CchHHHH
Q 014376 388 SNPDIQE 394 (426)
Q Consensus 388 s~~di~~ 394 (426)
|++||.-
T Consensus 335 SGsDisi 341 (439)
T KOG0739|consen 335 SGSDISI 341 (439)
T ss_pred CcCceEE
Confidence 9999743
No 9
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.3e-30 Score=257.99 Aligned_cols=218 Identities=24% Similarity=0.333 Sum_probs=189.8
Q ss_pred ccccccchhhhhhhchhhHHHHHH---HHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCC
Q 014376 149 LPAKEFDGMWESLIYESGLKQRLL---HYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSR 225 (426)
Q Consensus 149 lp~~~~~~~~~~lv~~~~~k~~L~---~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~ 225 (426)
.|.....-.|+++-|-++.|+.|. +|++.+..|...|-.- +++|||.||||||||.|||++|++.+.+|
T Consensus 294 ~p~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKL-----PKGVLLvGPPGTGKTlLARAvAGEA~VPF--- 365 (752)
T KOG0734|consen 294 DPEQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKL-----PKGVLLVGPPGTGKTLLARAVAGEAGVPF--- 365 (752)
T ss_pred ChhhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcC-----CCceEEeCCCCCchhHHHHHhhcccCCCe---
Confidence 344444566999999999998765 6677888898877443 58899999999999999999999999887
Q ss_pred CCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHH
Q 014376 226 YPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQ 305 (426)
Q Consensus 226 ~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ 305 (426)
++..++++-..++|...+.++.+|+.++. .+||||||||+|.+..+|.. .........+|+||..
T Consensus 366 ------F~~sGSEFdEm~VGvGArRVRdLF~aAk~-----~APcIIFIDEiDavG~kR~~----~~~~y~kqTlNQLLvE 430 (752)
T KOG0734|consen 366 ------FYASGSEFDEMFVGVGARRVRDLFAAAKA-----RAPCIIFIDEIDAVGGKRNP----SDQHYAKQTLNQLLVE 430 (752)
T ss_pred ------EeccccchhhhhhcccHHHHHHHHHHHHh-----cCCeEEEEechhhhcccCCc----cHHHHHHHHHHHHHHH
Confidence 88888888888889999999999999998 59999999999999988743 1122567899999999
Q ss_pred hhhhcCCCcEEEEEEeCCCCcCCHHHh--cccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHH
Q 014376 306 MDKLKSSPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSIL 383 (426)
Q Consensus 306 ld~l~~~~~viVi~TtN~~~~ld~al~--~R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~ 383 (426)
||+++.+..+|||++||.++.+|+|+. +|||+.+.+|.|+...|.+|++.++.+.. .....++.-+++-
T Consensus 431 mDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~---------~~~~VD~~iiARG 501 (752)
T KOG0734|consen 431 MDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIP---------LDEDVDPKIIARG 501 (752)
T ss_pred hcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCC---------cccCCCHhHhccC
Confidence 999999999999999999999999999 79999999999999999999999999865 3446688899999
Q ss_pred hhccCchHHHHhhhh
Q 014376 384 KEKLSNPDIQEADRS 398 (426)
Q Consensus 384 ~~~~s~~di~~~~~~ 398 (426)
+.|++++|++++++.
T Consensus 502 T~GFsGAdLaNlVNq 516 (752)
T KOG0734|consen 502 TPGFSGADLANLVNQ 516 (752)
T ss_pred CCCCchHHHHHHHHH
Confidence 999999999998654
No 10
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.5e-30 Score=247.36 Aligned_cols=225 Identities=28% Similarity=0.387 Sum_probs=191.5
Q ss_pred ccccccchhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCc
Q 014376 149 LPAKEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQ 228 (426)
Q Consensus 149 lp~~~~~~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~ 228 (426)
.|..+.+-.|+++.+.+.+++.|.+.+.-++.....--.--.....++||||||||||||.+|+++|++.+.+|
T Consensus 82 v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~f------ 155 (386)
T KOG0737|consen 82 VPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANF------ 155 (386)
T ss_pred cchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCc------
Confidence 56677888999999999999999999876554333110111233478999999999999999999999998776
Q ss_pred ceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhh
Q 014376 229 CQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK 308 (426)
Q Consensus 229 ~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~ 308 (426)
+.+..+.+.++|||+..+.+..+|..+..+ .|+++||||+|++...|+ .++.......-++|+..+|+
T Consensus 156 ---Inv~~s~lt~KWfgE~eKlv~AvFslAsKl-----~P~iIFIDEvds~L~~R~----s~dHEa~a~mK~eFM~~WDG 223 (386)
T KOG0737|consen 156 ---INVSVSNLTSKWFGEAQKLVKAVFSLASKL-----QPSIIFIDEVDSFLGQRR----STDHEATAMMKNEFMALWDG 223 (386)
T ss_pred ---ceeeccccchhhHHHHHHHHHHHHhhhhhc-----CcceeehhhHHHHHhhcc----cchHHHHHHHHHHHHHHhcc
Confidence 889999999999999999999999999875 899999999999999883 33334445677889999999
Q ss_pred hcCCCc--EEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhc
Q 014376 309 LKSSPN--VIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEK 386 (426)
Q Consensus 309 l~~~~~--viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~ 386 (426)
+....+ ++|+++||+|..+|.|+++|+...++++.|+..+|++||+-.++... ..+..++..++.+++|
T Consensus 224 l~s~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~---------~e~~vD~~~iA~~t~G 294 (386)
T KOG0737|consen 224 LSSKDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEK---------LEDDVDLDEIAQMTEG 294 (386)
T ss_pred ccCCCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccc---------cCcccCHHHHHHhcCC
Confidence 987765 99999999999999999999999999999999999999999997753 3467899999999999
Q ss_pred cCchHHHHhhhhHH
Q 014376 387 LSNPDIQEADRSQH 400 (426)
Q Consensus 387 ~s~~di~~~~~~~~ 400 (426)
||+.|+++.|+.++
T Consensus 295 ySGSDLkelC~~Aa 308 (386)
T KOG0737|consen 295 YSGSDLKELCRLAA 308 (386)
T ss_pred CcHHHHHHHHHHHh
Confidence 99999999997644
No 11
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.2e-29 Score=228.81 Aligned_cols=220 Identities=27% Similarity=0.405 Sum_probs=195.8
Q ss_pred ccccccchhhhhhhchhhHHHHHHHHHHH----HHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccC
Q 014376 149 LPAKEFDGMWESLIYESGLKQRLLHYAAS----ALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSS 224 (426)
Q Consensus 149 lp~~~~~~~~~~lv~~~~~k~~L~~~~~~----~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~ 224 (426)
-|+..++-.+.++.|.+-.|+.+.+.+.- ..+|.+-|++| ++++|+|||||||||+|++++|+.....|
T Consensus 145 ~~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidp-----prgvllygppg~gktml~kava~~t~a~f-- 217 (408)
T KOG0727|consen 145 GPDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDP-----PRGVLLYGPPGTGKTMLAKAVANHTTAAF-- 217 (408)
T ss_pred CCCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCC-----CcceEEeCCCCCcHHHHHHHHhhccchhe--
Confidence 46777778888999999899999988764 45788899998 89999999999999999999999886554
Q ss_pred CCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHH
Q 014376 225 RYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLT 304 (426)
Q Consensus 225 ~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~ 304 (426)
+.+.++++..+|.|+..+.++.+|..+++ +.|+|+||||+|.++.+|-++..|.. ....+++-+||+
T Consensus 218 -------irvvgsefvqkylgegprmvrdvfrlake-----napsiifideidaiatkrfdaqtgad-revqril~elln 284 (408)
T KOG0727|consen 218 -------IRVVGSEFVQKYLGEGPRMVRDVFRLAKE-----NAPSIIFIDEIDAIATKRFDAQTGAD-REVQRILIELLN 284 (408)
T ss_pred -------eeeccHHHHHHHhccCcHHHHHHHHHHhc-----cCCcEEEeehhhhHhhhhcccccccc-HHHHHHHHHHHH
Confidence 99999999999999999999999999988 69999999999999999987766554 456788889999
Q ss_pred HhhhhcCCCcEEEEEEeCCCCcCCHHHh--cccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHH
Q 014376 305 QMDKLKSSPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSI 382 (426)
Q Consensus 305 ~ld~l~~~~~viVi~TtN~~~~ld~al~--~R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~ 382 (426)
+||++....|+-||.+||+.+.+|+|++ +|.|++|+||.|+..+++-++..+..++. ..+..++.++..
T Consensus 285 qmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~---------ls~~vdle~~v~ 355 (408)
T KOG0727|consen 285 QMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMN---------LSDEVDLEDLVA 355 (408)
T ss_pred hccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhccc---------CCcccCHHHHhc
Confidence 9999999999999999999999999999 79999999999999999999999888764 456678999999
Q ss_pred HhhccCchHHHHhhh
Q 014376 383 LKEKLSNPDIQEADR 397 (426)
Q Consensus 383 ~~~~~s~~di~~~~~ 397 (426)
..+..|+++|...|.
T Consensus 356 rpdkis~adi~aicq 370 (408)
T KOG0727|consen 356 RPDKISGADINAICQ 370 (408)
T ss_pred CccccchhhHHHHHH
Confidence 999999999987764
No 12
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.7e-29 Score=260.59 Aligned_cols=218 Identities=25% Similarity=0.385 Sum_probs=193.2
Q ss_pred hhhhhhhchhhHHHHHHHH---HHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEE
Q 014376 156 GMWESLIYESGLKQRLLHY---AASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLV 232 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~---~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i 232 (426)
-.|.++.|.+++|+.|.++ ++++..|.+.|... ++++||+||||||||.||||+|++.+.|| +
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKi-----PkGvLL~GPPGTGKTLLAKAiAGEAgVPF---------~ 373 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKI-----PKGVLLVGPPGTGKTLLAKAIAGEAGVPF---------F 373 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcC-----cCceEEECCCCCcHHHHHHHHhcccCCce---------e
Confidence 5699999999999987755 56788999999876 79999999999999999999999999888 8
Q ss_pred EEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCC
Q 014376 233 EVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS 312 (426)
Q Consensus 233 ~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~ 312 (426)
.++++++...+.+.....++.+|..++. ..|+|++|||||.+...|.+...++-.......+|+|+..||++...
T Consensus 374 svSGSEFvE~~~g~~asrvr~lf~~ar~-----~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~ 448 (774)
T KOG0731|consen 374 SVSGSEFVEMFVGVGASRVRDLFPLARK-----NAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS 448 (774)
T ss_pred eechHHHHHHhcccchHHHHHHHHHhhc-----cCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC
Confidence 9999999888888778899999999998 59999999999999998864344444456678999999999999998
Q ss_pred CcEEEEEEeCCCCcCCHHHh--cccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhccCch
Q 014376 313 PNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNP 390 (426)
Q Consensus 313 ~~viVi~TtN~~~~ld~al~--~R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~s~~ 390 (426)
..+||+++||+++.+|+|++ +|||+.++++.|+...|.+|++.|+.+... ..+..++..++.++.|++++
T Consensus 449 ~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~--------~~e~~dl~~~a~~t~gf~ga 520 (774)
T KOG0731|consen 449 KGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL--------DDEDVDLSKLASLTPGFSGA 520 (774)
T ss_pred CcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC--------CcchhhHHHHHhcCCCCcHH
Confidence 99999999999999999999 799999999999999999999999988752 24556788899999999999
Q ss_pred HHHHhhhhHH
Q 014376 391 DIQEADRSQH 400 (426)
Q Consensus 391 di~~~~~~~~ 400 (426)
||.+.|+..+
T Consensus 521 dl~n~~neaa 530 (774)
T KOG0731|consen 521 DLANLCNEAA 530 (774)
T ss_pred HHHhhhhHHH
Confidence 9999987543
No 13
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.96 E-value=1.4e-27 Score=241.27 Aligned_cols=217 Identities=28% Similarity=0.407 Sum_probs=182.5
Q ss_pred ccchhhhhhhchhhHHHHHHHHHHHH----HHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCc
Q 014376 153 EFDGMWESLIYESGLKQRLLHYAASA----LMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQ 228 (426)
Q Consensus 153 ~~~~~~~~lv~~~~~k~~L~~~~~~~----~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~ 228 (426)
.++-.|+++.|.+.+|+.|.+.+..+ ..|...|+++ ++++|||||||||||++++++|+.++.++
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~-----pkgvLL~GppGTGKT~LAkalA~~l~~~f------ 207 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDP-----PRGVLLYGPPGTGKTMLAKAVAHHTTATF------ 207 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCC-----CceEEEECCCCCCHHHHHHHHHHhcCCCE------
Confidence 34567999999999999999887654 4667778776 79999999999999999999999987554
Q ss_pred ceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhh
Q 014376 229 CQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK 308 (426)
Q Consensus 229 ~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~ 308 (426)
+.+.+..+..+|.++..+.++.+|..++. ..|+||||||+|.+..++.+..++. .....+.+..+++.+++
T Consensus 208 ---i~i~~s~l~~k~~ge~~~~lr~lf~~A~~-----~~P~ILfIDEID~i~~~r~~~~~~~-d~~~~r~l~~LL~~ld~ 278 (398)
T PTZ00454 208 ---IRVVGSEFVQKYLGEGPRMVRDVFRLARE-----NAPSIIFIDEVDSIATKRFDAQTGA-DREVQRILLELLNQMDG 278 (398)
T ss_pred ---EEEehHHHHHHhcchhHHHHHHHHHHHHh-----cCCeEEEEECHhhhccccccccCCc-cHHHHHHHHHHHHHhhc
Confidence 88888888899999999999999998876 5899999999999987764433322 23445778889999998
Q ss_pred hcCCCcEEEEEEeCCCCcCCHHHhc--ccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhc
Q 014376 309 LKSSPNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEK 386 (426)
Q Consensus 309 l~~~~~viVi~TtN~~~~ld~al~~--R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~ 386 (426)
+....+++||++||.++.+|+++++ ||+.+++++.|+.++|.+||+.++.+.. .....++..++..++|
T Consensus 279 ~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~---------l~~dvd~~~la~~t~g 349 (398)
T PTZ00454 279 FDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMN---------LSEEVDLEDFVSRPEK 349 (398)
T ss_pred cCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCC---------CCcccCHHHHHHHcCC
Confidence 8777889999999999999999985 9999999999999999999998886542 2345678999999999
Q ss_pred cCchHHHHhhhh
Q 014376 387 LSNPDIQEADRS 398 (426)
Q Consensus 387 ~s~~di~~~~~~ 398 (426)
++++||+..|..
T Consensus 350 ~sgaDI~~l~~e 361 (398)
T PTZ00454 350 ISAADIAAICQE 361 (398)
T ss_pred CCHHHHHHHHHH
Confidence 999999988754
No 14
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.3e-28 Score=249.91 Aligned_cols=214 Identities=25% Similarity=0.381 Sum_probs=180.3
Q ss_pred cchhhhhhhchhhHHHHHHHHHHHHHHHhh---cCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcce
Q 014376 154 FDGMWESLIYESGLKQRLLHYAASALMFAE---KGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQ 230 (426)
Q Consensus 154 ~~~~~~~lv~~~~~k~~L~~~~~~~~~~~~---~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~ 230 (426)
+.--|+++-|.+++|..+++.+..++.+.+ .|..+ ..+||||||||||||.+|||+|-+++..|
T Consensus 667 PnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrk-----RSGILLYGPPGTGKTLlAKAVATEcsL~F-------- 733 (953)
T KOG0736|consen 667 PNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRK-----RSGILLYGPPGTGKTLLAKAVATECSLNF-------- 733 (953)
T ss_pred CccchhcccCHHHHHHHHHHHhcCcccChhhhhccccc-----cceeEEECCCCCchHHHHHHHHhhceeeE--------
Confidence 445799999999999999999887665443 35443 57899999999999999999999998776
Q ss_pred EEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc
Q 014376 231 LVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK 310 (426)
Q Consensus 231 ~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~ 310 (426)
+.+.+.++.++|+|+++++++++|++++. .+|||+|+||+|++++.|...-.+| .--.|++.+||-+||++.
T Consensus 734 -lSVKGPELLNMYVGqSE~NVR~VFerAR~-----A~PCVIFFDELDSlAP~RG~sGDSG--GVMDRVVSQLLAELDgls 805 (953)
T KOG0736|consen 734 -LSVKGPELLNMYVGQSEENVREVFERARS-----AAPCVIFFDELDSLAPNRGRSGDSG--GVMDRVVSQLLAELDGLS 805 (953)
T ss_pred -EeecCHHHHHHHhcchHHHHHHHHHHhhc-----cCCeEEEeccccccCccCCCCCCcc--ccHHHHHHHHHHHhhccc
Confidence 89999999999999999999999999998 5999999999999999986532222 223589999999999998
Q ss_pred C--CCcEEEEEEeCCCCcCCHHHh--cccCeEEEeCCCCH-HHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHh-
Q 014376 311 S--SPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTL-QARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILK- 384 (426)
Q Consensus 311 ~--~~~viVi~TtN~~~~ld~al~--~R~~~~i~i~~p~~-~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~- 384 (426)
. ...+.||++||+|+.||++++ +|||..+|+++++. +.+..+++...+++. .....++.+++..+
T Consensus 806 ~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFk---------LdedVdL~eiAk~cp 876 (953)
T KOG0736|consen 806 DSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFK---------LDEDVDLVEIAKKCP 876 (953)
T ss_pred CCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHcc---------CCCCcCHHHHHhhCC
Confidence 4 567999999999999999999 89999999998865 567788888888765 45566888888775
Q ss_pred hccCchHHHHhhh
Q 014376 385 EKLSNPDIQEADR 397 (426)
Q Consensus 385 ~~~s~~di~~~~~ 397 (426)
..|+++|+=..|.
T Consensus 877 ~~~TGADlYsLCS 889 (953)
T KOG0736|consen 877 PNMTGADLYSLCS 889 (953)
T ss_pred cCCchhHHHHHHH
Confidence 5679999877753
No 15
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.1e-27 Score=250.56 Aligned_cols=216 Identities=33% Similarity=0.466 Sum_probs=186.7
Q ss_pred ccchhhhhhhchhhHHHHHHHHHHHHHHHhhc----CCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCc
Q 014376 153 EFDGMWESLIYESGLKQRLLHYAASALMFAEK----GVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQ 228 (426)
Q Consensus 153 ~~~~~~~~lv~~~~~k~~L~~~~~~~~~~~~~----g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~ 228 (426)
.....|+++.|.+++|+.+.+.+..+..+.+. |..+ .+++|||||||||||+||+++|.+++.+|
T Consensus 236 ~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~-----~~giLl~GpPGtGKT~lAkava~~~~~~f------ 304 (494)
T COG0464 236 DEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRP-----PKGVLLYGPPGTGKTLLAKAVALESRSRF------ 304 (494)
T ss_pred CCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCC-----CCeeEEECCCCCCHHHHHHHHHhhCCCeE------
Confidence 34467999999999999999998877766553 5444 67999999999999999999999887665
Q ss_pred ceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhh
Q 014376 229 CQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK 308 (426)
Q Consensus 229 ~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~ 308 (426)
+.+.+.++.++|+|++++.++.+|..++. ..|+|+||||+|+++..+.. +......+++++++.++++
T Consensus 305 ---i~v~~~~l~sk~vGesek~ir~~F~~A~~-----~~p~iiFiDEiDs~~~~r~~----~~~~~~~r~~~~lL~~~d~ 372 (494)
T COG0464 305 ---ISVKGSELLSKWVGESEKNIRELFEKARK-----LAPSIIFIDEIDSLASGRGP----SEDGSGRRVVGQLLTELDG 372 (494)
T ss_pred ---EEeeCHHHhccccchHHHHHHHHHHHHHc-----CCCcEEEEEchhhhhccCCC----CCchHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999996 58999999999999998742 2222336999999999999
Q ss_pred hcCCCcEEEEEEeCCCCcCCHHHhc--ccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhc
Q 014376 309 LKSSPNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEK 386 (426)
Q Consensus 309 l~~~~~viVi~TtN~~~~ld~al~~--R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~ 386 (426)
+....+++||++||.++.+|+++++ ||+..+++++|+.++|.+|++.++...... .....++..++..++|
T Consensus 373 ~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~-------~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 373 IEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPP-------LAEDVDLEELAEITEG 445 (494)
T ss_pred CCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCc-------chhhhhHHHHHHHhcC
Confidence 9999999999999999999999998 999999999999999999999999854321 2346788999999999
Q ss_pred cCchHHHHhhhh
Q 014376 387 LSNPDIQEADRS 398 (426)
Q Consensus 387 ~s~~di~~~~~~ 398 (426)
|+++||+..+..
T Consensus 446 ~sgadi~~i~~e 457 (494)
T COG0464 446 YSGADIAALVRE 457 (494)
T ss_pred CCHHHHHHHHHH
Confidence 999999888643
No 16
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.4e-27 Score=219.22 Aligned_cols=219 Identities=25% Similarity=0.387 Sum_probs=189.3
Q ss_pred ccccchhhhhhhchhhHHHHHHHHHH----HHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCC
Q 014376 151 AKEFDGMWESLIYESGLKQRLLHYAA----SALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRY 226 (426)
Q Consensus 151 ~~~~~~~~~~lv~~~~~k~~L~~~~~----~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~ 226 (426)
.+.++..++-+-|.+...+.+.+.+. .+.+|...|+.. ++++|||||||||||.|++++|...
T Consensus 139 eKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQ-----PKGvlLygppgtGktLlaraVahht-------- 205 (404)
T KOG0728|consen 139 EKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQ-----PKGVLLYGPPGTGKTLLARAVAHHT-------- 205 (404)
T ss_pred hhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCC-----CcceEEecCCCCchhHHHHHHHhhc--------
Confidence 34566678778888777677776654 566788777654 7999999999999999999999976
Q ss_pred CcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHh
Q 014376 227 PQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQM 306 (426)
Q Consensus 227 ~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l 306 (426)
.|.++.++++++..+|+|+..+.++.+|-.+++ ++|.|+|+||||++...|...-+| .++...+.+-+||+++
T Consensus 206 -~c~firvsgselvqk~igegsrmvrelfvmare-----hapsiifmdeidsigs~r~e~~~g-gdsevqrtmlellnql 278 (404)
T KOG0728|consen 206 -DCTFIRVSGSELVQKYIGEGSRMVRELFVMARE-----HAPSIIFMDEIDSIGSSRVESGSG-GDSEVQRTMLELLNQL 278 (404)
T ss_pred -ceEEEEechHHHHHHHhhhhHHHHHHHHHHHHh-----cCCceEeeecccccccccccCCCC-ccHHHHHHHHHHHHhc
Confidence 567799999999999999999999999999988 799999999999999988765555 3466788889999999
Q ss_pred hhhcCCCcEEEEEEeCCCCcCCHHHh--cccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHh
Q 014376 307 DKLKSSPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILK 384 (426)
Q Consensus 307 d~l~~~~~viVi~TtN~~~~ld~al~--~R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~ 384 (426)
|++...+|+-||.+||+.+.+|+|++ +|+|++|+||+|+.++|.+|++-+-.++.- ....++..+++.+
T Consensus 279 dgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl---------~rgi~l~kiaekm 349 (404)
T KOG0728|consen 279 DGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNL---------TRGINLRKIAEKM 349 (404)
T ss_pred cccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhch---------hcccCHHHHHHhC
Confidence 99999999999999999999999999 799999999999999999999998887653 3445789999999
Q ss_pred hccCchHHHHhhhh
Q 014376 385 EKLSNPDIQEADRS 398 (426)
Q Consensus 385 ~~~s~~di~~~~~~ 398 (426)
.|.|+++++..|..
T Consensus 350 ~gasgaevk~vcte 363 (404)
T KOG0728|consen 350 PGASGAEVKGVCTE 363 (404)
T ss_pred CCCccchhhhhhhh
Confidence 99999999887753
No 17
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=2e-27 Score=259.08 Aligned_cols=213 Identities=31% Similarity=0.501 Sum_probs=182.1
Q ss_pred chhhhhhhchhhHHHHHHHHHHHHHH----HhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcce
Q 014376 155 DGMWESLIYESGLKQRLLHYAASALM----FAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQ 230 (426)
Q Consensus 155 ~~~~~~lv~~~~~k~~L~~~~~~~~~----~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~ 230 (426)
.-.|+++.|.+++|+.|.+.+..+.. |...|+.+ ++++|||||||||||++|+++|++++.++
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~-----~~giLL~GppGtGKT~lakalA~e~~~~f-------- 515 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRP-----PKGVLLFGPPGTGKTLLAKAVATESGANF-------- 515 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCC-----CceEEEECCCCCCHHHHHHHHHHhcCCCE--------
Confidence 44799999999999999998876544 44456554 78899999999999999999999997655
Q ss_pred EEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc
Q 014376 231 LVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK 310 (426)
Q Consensus 231 ~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~ 310 (426)
+.+++.++.++|++++++.++.+|+.++. ..|+|+||||+|.+...+.... ......+++++|+..|+++.
T Consensus 516 -i~v~~~~l~~~~vGese~~i~~~f~~A~~-----~~p~iifiDEid~l~~~r~~~~---~~~~~~~~~~~lL~~ldg~~ 586 (733)
T TIGR01243 516 -IAVRGPEILSKWVGESEKAIREIFRKARQ-----AAPAIIFFDEIDAIAPARGARF---DTSVTDRIVNQLLTEMDGIQ 586 (733)
T ss_pred -EEEehHHHhhcccCcHHHHHHHHHHHHHh-----cCCEEEEEEChhhhhccCCCCC---CccHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999987 4899999999999998764321 12244689999999999998
Q ss_pred CCCcEEEEEEeCCCCcCCHHHhc--ccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhccC
Q 014376 311 SSPNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLS 388 (426)
Q Consensus 311 ~~~~viVi~TtN~~~~ld~al~~--R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~s 388 (426)
...+++||+|||.++.+|+++++ ||+..+++++|+.++|.+||+.+..+.. .....++..++..++||+
T Consensus 587 ~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~---------~~~~~~l~~la~~t~g~s 657 (733)
T TIGR01243 587 ELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMP---------LAEDVDLEELAEMTEGYT 657 (733)
T ss_pred CCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCC---------CCccCCHHHHHHHcCCCC
Confidence 88899999999999999999994 9999999999999999999987765432 234567899999999999
Q ss_pred chHHHHhhhh
Q 014376 389 NPDIQEADRS 398 (426)
Q Consensus 389 ~~di~~~~~~ 398 (426)
++||+..|+.
T Consensus 658 gadi~~~~~~ 667 (733)
T TIGR01243 658 GADIEAVCRE 667 (733)
T ss_pred HHHHHHHHHH
Confidence 9999988653
No 18
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.95 E-value=4.2e-27 Score=242.78 Aligned_cols=213 Identities=20% Similarity=0.291 Sum_probs=175.0
Q ss_pred chhhhhhhchhhHHHHHHHHHHH-HHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEE
Q 014376 155 DGMWESLIYESGLKQRLLHYAAS-ALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVE 233 (426)
Q Consensus 155 ~~~~~~lv~~~~~k~~L~~~~~~-~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~ 233 (426)
...|+++.|.+.+|+.+.+.... .......|+++ ++++|||||||||||++|+++|+.++.++ +.
T Consensus 224 ~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~-----pkGILL~GPpGTGKTllAkaiA~e~~~~~---------~~ 289 (489)
T CHL00195 224 NEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPT-----PRGLLLVGIQGTGKSLTAKAIANDWQLPL---------LR 289 (489)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCC-----CceEEEECCCCCcHHHHHHHHHHHhCCCE---------EE
Confidence 34689999999999988765432 12233456554 78999999999999999999999998766 88
Q ss_pred EeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCC
Q 014376 234 VNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSP 313 (426)
Q Consensus 234 i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~ 313 (426)
+++..++++|+|++++.++++|+.++. ..|+||+|||+|.+...+.. .++.....++++.+++.|+. ...
T Consensus 290 l~~~~l~~~~vGese~~l~~~f~~A~~-----~~P~IL~IDEID~~~~~~~~---~~d~~~~~rvl~~lL~~l~~--~~~ 359 (489)
T CHL00195 290 LDVGKLFGGIVGESESRMRQMIRIAEA-----LSPCILWIDEIDKAFSNSES---KGDSGTTNRVLATFITWLSE--KKS 359 (489)
T ss_pred EEhHHhcccccChHHHHHHHHHHHHHh-----cCCcEEEehhhhhhhccccC---CCCchHHHHHHHHHHHHHhc--CCC
Confidence 999999999999999999999998877 48999999999998765422 23334567888888888875 356
Q ss_pred cEEEEEEeCCCCcCCHHHhc--ccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhccCchH
Q 014376 314 NVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPD 391 (426)
Q Consensus 314 ~viVi~TtN~~~~ld~al~~--R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~s~~d 391 (426)
+++||+|||.++.+|+++++ |||.+++++.|+.++|.+||+.++.+... ......++..++..++||+++|
T Consensus 360 ~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~-------~~~~~~dl~~La~~T~GfSGAd 432 (489)
T CHL00195 360 PVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRP-------KSWKKYDIKKLSKLSNKFSGAE 432 (489)
T ss_pred ceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCC-------CcccccCHHHHHhhcCCCCHHH
Confidence 79999999999999999984 99999999999999999999999988531 1123567899999999999999
Q ss_pred HHHhhhh
Q 014376 392 IQEADRS 398 (426)
Q Consensus 392 i~~~~~~ 398 (426)
|++.+..
T Consensus 433 I~~lv~e 439 (489)
T CHL00195 433 IEQSIIE 439 (489)
T ss_pred HHHHHHH
Confidence 9987643
No 19
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.1e-27 Score=245.48 Aligned_cols=209 Identities=28% Similarity=0.360 Sum_probs=183.8
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhh----cCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceE
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAE----KGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQL 231 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~----~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~ 231 (426)
--|+++.|..++|+.|.+.+.++..|+. .++. ...+||||||||||||.||.++|..++.+|
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr-----~~~giLLyGppGcGKT~la~a~a~~~~~~f--------- 729 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLR-----LRTGILLYGPPGCGKTLLASAIASNSNLRF--------- 729 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCCcc-----cccceEEECCCCCcHHHHHHHHHhhCCeeE---------
Confidence 4599999999999999999988776654 3332 356799999999999999999999998766
Q ss_pred EEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcC
Q 014376 232 VEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS 311 (426)
Q Consensus 232 i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~ 311 (426)
+.+.+.++.++|+|.++..++.+|.+++. .+|||+|+||+|+++++|...- ..-..|++|++|++||+...
T Consensus 730 isvKGPElL~KyIGaSEq~vR~lF~rA~~-----a~PCiLFFDEfdSiAPkRGhDs----TGVTDRVVNQlLTelDG~Eg 800 (952)
T KOG0735|consen 730 ISVKGPELLSKYIGASEQNVRDLFERAQS-----AKPCILFFDEFDSIAPKRGHDS----TGVTDRVVNQLLTELDGAEG 800 (952)
T ss_pred EEecCHHHHHHHhcccHHHHHHHHHHhhc-----cCCeEEEeccccccCcccCCCC----CCchHHHHHHHHHhhccccc
Confidence 99999999999999999999999999998 5999999999999999884321 12346999999999999888
Q ss_pred CCcEEEEEEeCCCCcCCHHHh--cccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhccCc
Q 014376 312 SPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSN 389 (426)
Q Consensus 312 ~~~viVi~TtN~~~~ld~al~--~R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~s~ 389 (426)
-.++.|+++|.+|+.+|+|++ +|+|..++-+.|+..+|.+|++.....+. .....++..++.+++||++
T Consensus 801 l~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~---------~~~~vdl~~~a~~T~g~tg 871 (952)
T KOG0735|consen 801 LDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLL---------KDTDVDLECLAQKTDGFTG 871 (952)
T ss_pred cceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccC---------CccccchHHHhhhcCCCch
Confidence 889999999999999999999 79999999999999999999998877654 2456789999999999999
Q ss_pred hHHHHhh
Q 014376 390 PDIQEAD 396 (426)
Q Consensus 390 ~di~~~~ 396 (426)
+|+...+
T Consensus 872 ADlq~ll 878 (952)
T KOG0735|consen 872 ADLQSLL 878 (952)
T ss_pred hhHHHHH
Confidence 9998764
No 20
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.95 E-value=2e-26 Score=233.51 Aligned_cols=216 Identities=28% Similarity=0.394 Sum_probs=179.2
Q ss_pred cchhhhhhhchhhHHHHHHHHHHHH----HHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcc
Q 014376 154 FDGMWESLIYESGLKQRLLHYAASA----LMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQC 229 (426)
Q Consensus 154 ~~~~~~~lv~~~~~k~~L~~~~~~~----~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~ 229 (426)
++..|+++.|.++.++.+.+++..+ ..|...|+.+ ++++|||||||||||++|+++|+.++.++
T Consensus 126 p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~-----p~gvLL~GppGtGKT~lAkaia~~~~~~~------- 193 (389)
T PRK03992 126 PNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEP-----PKGVLLYGPPGTGKTLLAKAVAHETNATF------- 193 (389)
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCC-----CCceEEECCCCCChHHHHHHHHHHhCCCE-------
Confidence 4567999999999999999887654 4556677665 78999999999999999999999987554
Q ss_pred eEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhh
Q 014376 230 QLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL 309 (426)
Q Consensus 230 ~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l 309 (426)
+.+++.++..+|.++..+.++.+|+.++. ..|++|||||+|.+...+.+...++. ....+.+..++..++++
T Consensus 194 --i~v~~~~l~~~~~g~~~~~i~~~f~~a~~-----~~p~IlfiDEiD~l~~~r~~~~~~~~-~~~~~~l~~lL~~ld~~ 265 (389)
T PRK03992 194 --IRVVGSELVQKFIGEGARLVRELFELARE-----KAPSIIFIDEIDAIAAKRTDSGTSGD-REVQRTLMQLLAEMDGF 265 (389)
T ss_pred --EEeehHHHhHhhccchHHHHHHHHHHHHh-----cCCeEEEEechhhhhcccccCCCCcc-HHHHHHHHHHHHhcccc
Confidence 88999999999999999999999998876 48899999999999887654332222 23345667788888887
Q ss_pred cCCCcEEEEEEeCCCCcCCHHHhc--ccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhcc
Q 014376 310 KSSPNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKL 387 (426)
Q Consensus 310 ~~~~~viVi~TtN~~~~ld~al~~--R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~ 387 (426)
...++++||+|||.++.+|+++++ ||+..+++++|+.++|.+|++.++.... .....++..++..++|+
T Consensus 266 ~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~---------~~~~~~~~~la~~t~g~ 336 (389)
T PRK03992 266 DPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMN---------LADDVDLEELAELTEGA 336 (389)
T ss_pred CCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCC---------CCCcCCHHHHHHHcCCC
Confidence 777899999999999999999984 9999999999999999999998876542 22346789999999999
Q ss_pred CchHHHHhhhh
Q 014376 388 SNPDIQEADRS 398 (426)
Q Consensus 388 s~~di~~~~~~ 398 (426)
+++|++..|+.
T Consensus 337 sgadl~~l~~e 347 (389)
T PRK03992 337 SGADLKAICTE 347 (389)
T ss_pred CHHHHHHHHHH
Confidence 99999988653
No 21
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.95 E-value=1.9e-26 Score=234.69 Aligned_cols=218 Identities=28% Similarity=0.402 Sum_probs=182.1
Q ss_pred cccchhhhhhhchhhHHHHHHHHHHHH----HHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCC
Q 014376 152 KEFDGMWESLIYESGLKQRLLHYAASA----LMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYP 227 (426)
Q Consensus 152 ~~~~~~~~~lv~~~~~k~~L~~~~~~~----~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~ 227 (426)
..+...|+++.|.++.++.+.+++..+ ..|...|+.+ ++++|||||||||||++++++|+.++.++
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~-----p~gVLL~GPPGTGKT~LAraIA~el~~~f----- 245 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKP-----PKGVILYGPPGTGKTLLAKAVANETSATF----- 245 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCC-----CcEEEEECCCCCCHHHHHHHHHHhhCCCE-----
Confidence 345568999999999999998887643 4566677665 78999999999999999999999986544
Q ss_pred cceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhh
Q 014376 228 QCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMD 307 (426)
Q Consensus 228 ~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld 307 (426)
+.+.+.++.++|.++....+..+|..+.. ..|+|+||||+|.+..++....++++. ...+.+..++..++
T Consensus 246 ----i~V~~seL~~k~~Ge~~~~vr~lF~~A~~-----~~P~ILfIDEID~l~~kR~~~~sgg~~-e~qr~ll~LL~~Ld 315 (438)
T PTZ00361 246 ----LRVVGSELIQKYLGDGPKLVRELFRVAEE-----NAPSIVFIDEIDAIGTKRYDATSGGEK-EIQRTMLELLNQLD 315 (438)
T ss_pred ----EEEecchhhhhhcchHHHHHHHHHHHHHh-----CCCcEEeHHHHHHHhccCCCCCCcccH-HHHHHHHHHHHHHh
Confidence 88889999999999999999999988776 588999999999999877655555442 34566778888898
Q ss_pred hhcCCCcEEEEEEeCCCCcCCHHHh--cccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhh
Q 014376 308 KLKSSPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKE 385 (426)
Q Consensus 308 ~l~~~~~viVi~TtN~~~~ld~al~--~R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~ 385 (426)
++....++.||++||.++.+|++++ +||+..|+++.|+.++|.+||+.++.++. .....++..++..++
T Consensus 316 g~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~---------l~~dvdl~~la~~t~ 386 (438)
T PTZ00361 316 GFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMT---------LAEDVDLEEFIMAKD 386 (438)
T ss_pred hhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCC---------CCcCcCHHHHHHhcC
Confidence 8877788999999999999999998 59999999999999999999998876542 234567899999999
Q ss_pred ccCchHHHHhhhh
Q 014376 386 KLSNPDIQEADRS 398 (426)
Q Consensus 386 ~~s~~di~~~~~~ 398 (426)
|++++||+..|..
T Consensus 387 g~sgAdI~~i~~e 399 (438)
T PTZ00361 387 ELSGADIKAICTE 399 (438)
T ss_pred CCCHHHHHHHHHH
Confidence 9999999988643
No 22
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.7e-27 Score=222.65 Aligned_cols=218 Identities=27% Similarity=0.385 Sum_probs=192.0
Q ss_pred cccchhhhhhhchhhHHHHHHHHHH----HHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCC
Q 014376 152 KEFDGMWESLIYESGLKQRLLHYAA----SALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYP 227 (426)
Q Consensus 152 ~~~~~~~~~lv~~~~~k~~L~~~~~----~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~ 227 (426)
+.+...+.++-|.++..+.+.+.+. .+.+|.+.|+.| +++|+|||+||||||.||+++|+..+..|
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikp-----PKGVIlyG~PGTGKTLLAKAVANqTSATF----- 247 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKP-----PKGVILYGEPGTGKTLLAKAVANQTSATF----- 247 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCC-----CCeeEEeCCCCCchhHHHHHHhcccchhh-----
Confidence 3444577888899888888888775 466888899887 89999999999999999999999987665
Q ss_pred cceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhh
Q 014376 228 QCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMD 307 (426)
Q Consensus 228 ~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld 307 (426)
+.+-++++..+|.|+..+.++++|+-+.+ ++|+|+||||||.+..+|.+.-||++. .-.+.+-.||+++|
T Consensus 248 ----lRvvGseLiQkylGdGpklvRqlF~vA~e-----~apSIvFiDEIdAiGtKRyds~Sgger-EiQrtmLELLNQld 317 (440)
T KOG0726|consen 248 ----LRVVGSELIQKYLGDGPKLVRELFRVAEE-----HAPSIVFIDEIDAIGTKRYDSNSGGER-EIQRTMLELLNQLD 317 (440)
T ss_pred ----hhhhhHHHHHHHhccchHHHHHHHHHHHh-----cCCceEEeehhhhhccccccCCCccHH-HHHHHHHHHHHhcc
Confidence 88999999999999999999999999987 699999999999999999999888873 45567778999999
Q ss_pred hhcCCCcEEEEEEeCCCCcCCHHHh--cccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhh
Q 014376 308 KLKSSPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKE 385 (426)
Q Consensus 308 ~l~~~~~viVi~TtN~~~~ld~al~--~R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~ 385 (426)
++..++.+-||.+||..+.+|+|++ +|+|++|.|+.|+...+..|+.-+...+. .....++..+....+
T Consensus 318 GFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mt---------l~~dVnle~li~~kd 388 (440)
T KOG0726|consen 318 GFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMT---------LAEDVNLEELIMTKD 388 (440)
T ss_pred CccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccc---------hhccccHHHHhhccc
Confidence 9999999999999999999999999 79999999999999999999988877654 345668888888889
Q ss_pred ccCchHHHHhhhh
Q 014376 386 KLSNPDIQEADRS 398 (426)
Q Consensus 386 ~~s~~di~~~~~~ 398 (426)
.+|++||+..|..
T Consensus 389 dlSGAdIkAictE 401 (440)
T KOG0726|consen 389 DLSGADIKAICTE 401 (440)
T ss_pred ccccccHHHHHHH
Confidence 9999999998854
No 23
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.94 E-value=2.3e-26 Score=240.35 Aligned_cols=216 Identities=24% Similarity=0.374 Sum_probs=180.3
Q ss_pred cchhhhhhhchhhHHHHHHHHHH---HHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcce
Q 014376 154 FDGMWESLIYESGLKQRLLHYAA---SALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQ 230 (426)
Q Consensus 154 ~~~~~~~lv~~~~~k~~L~~~~~---~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~ 230 (426)
..-.|++++|.+++|+.+.+.+. .+..|...|..+ ++++||+||||||||++++++|+.++.++
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~-----~~giLL~GppGtGKT~la~alA~~~~~~~-------- 116 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKI-----PKGVLLVGPPGTGKTLLAKAVAGEAGVPF-------- 116 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCC-----CCcEEEECCCCCCHHHHHHHHHHHcCCCe--------
Confidence 34579999999999988876554 344566666554 67899999999999999999999987665
Q ss_pred EEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc
Q 014376 231 LVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK 310 (426)
Q Consensus 231 ~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~ 310 (426)
+.+++.++.+.+.+...+.++.+|..++. ..|+||||||+|.+...+....+++. ....+.++.|+..||++.
T Consensus 117 -~~i~~~~~~~~~~g~~~~~l~~~f~~a~~-----~~p~Il~iDEid~l~~~r~~~~~~~~-~~~~~~~~~lL~~~d~~~ 189 (495)
T TIGR01241 117 -FSISGSDFVEMFVGVGASRVRDLFEQAKK-----NAPCIIFIDEIDAVGRQRGAGLGGGN-DEREQTLNQLLVEMDGFG 189 (495)
T ss_pred -eeccHHHHHHHHhcccHHHHHHHHHHHHh-----cCCCEEEEechhhhhhccccCcCCcc-HHHHHHHHHHHhhhcccc
Confidence 88899888888888888999999999876 48899999999999987765433322 234578899999999998
Q ss_pred CCCcEEEEEEeCCCCcCCHHHhc--ccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhccC
Q 014376 311 SSPNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLS 388 (426)
Q Consensus 311 ~~~~viVi~TtN~~~~ld~al~~--R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~s 388 (426)
..++++||+|||.++.+|+++++ ||+..++++.|+.++|.+|++.++.... .....++..++..+.|++
T Consensus 190 ~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~---------~~~~~~l~~la~~t~G~s 260 (495)
T TIGR01241 190 TNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKK---------LAPDVDLKAVARRTPGFS 260 (495)
T ss_pred CCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCC---------CCcchhHHHHHHhCCCCC
Confidence 88899999999999999999995 9999999999999999999999886532 123457889999999999
Q ss_pred chHHHHhhhh
Q 014376 389 NPDIQEADRS 398 (426)
Q Consensus 389 ~~di~~~~~~ 398 (426)
++|++.+++.
T Consensus 261 gadl~~l~~e 270 (495)
T TIGR01241 261 GADLANLLNE 270 (495)
T ss_pred HHHHHHHHHH
Confidence 9999988753
No 24
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.9e-26 Score=212.84 Aligned_cols=216 Identities=22% Similarity=0.328 Sum_probs=184.6
Q ss_pred cccchhhhhhhchhhHHHHHHHHHHH----HHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCC
Q 014376 152 KEFDGMWESLIYESGLKQRLLHYAAS----ALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYP 227 (426)
Q Consensus 152 ~~~~~~~~~lv~~~~~k~~L~~~~~~----~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~ 227 (426)
..+...++++-|.+...+.|.+.+.- ...|...|+.| ++++|+|||||||||.+||+.|...+..|
T Consensus 164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~p-----PKGvLmYGPPGTGKTlmARAcAaqT~aTF----- 233 (424)
T KOG0652|consen 164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRP-----PKGVLMYGPPGTGKTLMARACAAQTNATF----- 233 (424)
T ss_pred cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCC-----CCceEeeCCCCCcHHHHHHHHHHhccchH-----
Confidence 44556788888988888888887654 44677788776 89999999999999999999999987665
Q ss_pred cceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhh
Q 014376 228 QCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMD 307 (426)
Q Consensus 228 ~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld 307 (426)
..+.+..+...|+|...+.++..|..+++ ..|+|+||||+|.+..+|-+.-..|. ....+.+-.||+++|
T Consensus 234 ----LKLAgPQLVQMfIGdGAkLVRDAFaLAKE-----kaP~IIFIDElDAIGtKRfDSek~GD-REVQRTMLELLNQLD 303 (424)
T KOG0652|consen 234 ----LKLAGPQLVQMFIGDGAKLVRDAFALAKE-----KAPTIIFIDELDAIGTKRFDSEKAGD-REVQRTMLELLNQLD 303 (424)
T ss_pred ----HHhcchHHHhhhhcchHHHHHHHHHHhhc-----cCCeEEEEechhhhcccccccccccc-HHHHHHHHHHHHhhc
Confidence 67778888889999999999999999987 69999999999999988854322222 344677778899999
Q ss_pred hhcCCCcEEEEEEeCCCCcCCHHHh--cccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhh
Q 014376 308 KLKSSPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKE 385 (426)
Q Consensus 308 ~l~~~~~viVi~TtN~~~~ld~al~--~R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~ 385 (426)
++.....+-||++||+.+.+|+|++ +|.|++|+||.|+.+.|.+|++-+..++. ..++.++.++++.++
T Consensus 304 GFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMn---------v~~DvNfeELaRsTd 374 (424)
T KOG0652|consen 304 GFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMN---------VSDDVNFEELARSTD 374 (424)
T ss_pred CCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcC---------CCCCCCHHHHhhccc
Confidence 9999999999999999999999999 79999999999999999999999888764 466789999999999
Q ss_pred ccCchHHHHhh
Q 014376 386 KLSNPDIQEAD 396 (426)
Q Consensus 386 ~~s~~di~~~~ 396 (426)
+|++++.+..|
T Consensus 375 dFNGAQcKAVc 385 (424)
T KOG0652|consen 375 DFNGAQCKAVC 385 (424)
T ss_pred ccCchhheeee
Confidence 99999987665
No 25
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=6.5e-26 Score=234.86 Aligned_cols=218 Identities=22% Similarity=0.352 Sum_probs=189.1
Q ss_pred cchhhhhhhchhhHHHHHH---HHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcce
Q 014376 154 FDGMWESLIYESGLKQRLL---HYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQ 230 (426)
Q Consensus 154 ~~~~~~~lv~~~~~k~~L~---~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~ 230 (426)
..-.|.++.|.++.|+.+. .+++.+..|...|-.- +++++|+||||||||+|||++|++.+.||
T Consensus 145 ~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGaki-----PkGvlLvGpPGTGKTLLAkAvAgEA~VPF-------- 211 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKI-----PKGVLLVGPPGTGKTLLAKAVAGEAGVPF-------- 211 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhccccc-----ccceeEecCCCCCcHHHHHHHhcccCCCc--------
Confidence 3356899999999998765 5566777888877643 68899999999999999999999999888
Q ss_pred EEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc
Q 014376 231 LVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK 310 (426)
Q Consensus 231 ~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~ 310 (426)
+.++++++...+++-....++.+|.+++. .+|||+||||+|.+...|... .|+.........|++|..||++.
T Consensus 212 -f~iSGS~FVemfVGvGAsRVRdLF~qAkk-----~aP~IIFIDEiDAvGr~Rg~g-~GggnderEQTLNQlLvEmDGF~ 284 (596)
T COG0465 212 -FSISGSDFVEMFVGVGASRVRDLFEQAKK-----NAPCIIFIDEIDAVGRQRGAG-LGGGNDEREQTLNQLLVEMDGFG 284 (596)
T ss_pred -eeccchhhhhhhcCCCcHHHHHHHHHhhc-----cCCCeEEEehhhhcccccCCC-CCCCchHHHHHHHHHHhhhccCC
Confidence 88999999988889889999999999998 589999999999999999766 34444455679999999999999
Q ss_pred CCCcEEEEEEeCCCCcCCHHHh--cccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhccC
Q 014376 311 SSPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLS 388 (426)
Q Consensus 311 ~~~~viVi~TtN~~~~ld~al~--~R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~s 388 (426)
.+..++|++.||+++.+|+|++ +|||+.+.++.|+...|.+|++.+.+... .....++..+++.+.|++
T Consensus 285 ~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~---------l~~~Vdl~~iAr~tpGfs 355 (596)
T COG0465 285 GNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKP---------LAEDVDLKKIARGTPGFS 355 (596)
T ss_pred CCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCC---------CCCcCCHHHHhhhCCCcc
Confidence 8889999999999999999999 79999999999999999999998877653 345567888999999999
Q ss_pred chHHHHhhhhHH
Q 014376 389 NPDIQEADRSQH 400 (426)
Q Consensus 389 ~~di~~~~~~~~ 400 (426)
++|+++.++..+
T Consensus 356 GAdL~nl~NEAa 367 (596)
T COG0465 356 GADLANLLNEAA 367 (596)
T ss_pred cchHhhhHHHHH
Confidence 999999876533
No 26
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.93 E-value=5.1e-25 Score=227.19 Aligned_cols=197 Identities=26% Similarity=0.410 Sum_probs=161.3
Q ss_pred cchhhhhhhchhhHHHHHHHHHHH----HHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCC-CCc
Q 014376 154 FDGMWESLIYESGLKQRLLHYAAS----ALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSR-YPQ 228 (426)
Q Consensus 154 ~~~~~~~lv~~~~~k~~L~~~~~~----~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~-~~~ 228 (426)
++..|+++.|.++.++.+.+.+.. +..|...|+.+ ++++|||||||||||++++++|+.++.++... ...
T Consensus 177 p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~-----p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~ 251 (512)
T TIGR03689 177 PDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKP-----PKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDK 251 (512)
T ss_pred CCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCC-----CcceEEECCCCCcHHHHHHHHHHhhccccccccCCc
Confidence 456799999999999998888764 44566677665 78999999999999999999999997653221 112
Q ss_pred ceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhh
Q 014376 229 CQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK 308 (426)
Q Consensus 229 ~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~ 308 (426)
..++.+.+.++.++|.++..+.++.+|+.++.... ...|+|+||||+|.+...+.... ......+++++|++.|++
T Consensus 252 ~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~-~g~p~IIfIDEiD~L~~~R~~~~---s~d~e~~il~~LL~~LDg 327 (512)
T TIGR03689 252 SYFLNIKGPELLNKYVGETERQIRLIFQRAREKAS-DGRPVIVFFDEMDSIFRTRGSGV---SSDVETTVVPQLLSELDG 327 (512)
T ss_pred eeEEeccchhhcccccchHHHHHHHHHHHHHHHhh-cCCCceEEEehhhhhhcccCCCc---cchHHHHHHHHHHHHhcc
Confidence 34566777888899999999999999999887543 24689999999999998764321 112335678999999999
Q ss_pred hcCCCcEEEEEEeCCCCcCCHHHhc--ccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 309 LKSSPNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 309 l~~~~~viVi~TtN~~~~ld~al~~--R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
+...++++||+|||.++.||+|+++ |||.+|++++|+.++|.+||+.++..
T Consensus 328 l~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 328 VESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred cccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 9888899999999999999999996 99999999999999999999999864
No 27
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=9.5e-26 Score=225.07 Aligned_cols=215 Identities=28% Similarity=0.375 Sum_probs=183.9
Q ss_pred cchhhhhhhchhhHHHHHHHHHHHHHHHhh--cCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceE
Q 014376 154 FDGMWESLIYESGLKQRLLHYAASALMFAE--KGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQL 231 (426)
Q Consensus 154 ~~~~~~~lv~~~~~k~~L~~~~~~~~~~~~--~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~ 231 (426)
.+-.|+++.|.+.+|+.+.+++..+.+..+ .|..+ ..+++||.||||+|||.|++++|.+.+..|
T Consensus 148 ~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~----p~rglLLfGPpgtGKtmL~~aiAsE~~atf--------- 214 (428)
T KOG0740|consen 148 RNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLRE----PVRGLLLFGPPGTGKTMLAKAIATESGATF--------- 214 (428)
T ss_pred CcccccCCcchhhHHHHhhhhhhhcccchHhhhcccc----ccchhheecCCCCchHHHHHHHHhhhcceE---------
Confidence 345799999999999999999887665333 34332 257899999999999999999999997665
Q ss_pred EEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc-
Q 014376 232 VEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK- 310 (426)
Q Consensus 232 i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~- 310 (426)
+.+.++++.++|.|++++.++.+|.-++.. .|.|+||||+|+++.+| +.++...+.+...+++-+++...
T Consensus 215 f~iSassLtsK~~Ge~eK~vralf~vAr~~-----qPsvifidEidslls~R----s~~e~e~srr~ktefLiq~~~~~s 285 (428)
T KOG0740|consen 215 FNISASSLTSKYVGESEKLVRALFKVARSL-----QPSVIFIDEIDSLLSKR----SDNEHESSRRLKTEFLLQFDGKNS 285 (428)
T ss_pred eeccHHHhhhhccChHHHHHHHHHHHHHhc-----CCeEEEechhHHHHhhc----CCcccccchhhhhHHHhhhccccC
Confidence 899999999999999999999999999984 99999999999999988 46666677888888888887653
Q ss_pred -CCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhccCc
Q 014376 311 -SSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSN 389 (426)
Q Consensus 311 -~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~s~ 389 (426)
...+++|+++||+|+.+|.++++||...+++|.|+.+.|..+|+..+.+. . ......++..++++++||++
T Consensus 286 ~~~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~-~-------~~l~~~d~~~l~~~Tegysg 357 (428)
T KOG0740|consen 286 APDDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQ-P-------NGLSDLDISLLAKVTEGYSG 357 (428)
T ss_pred CCCCeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhC-C-------CCccHHHHHHHHHHhcCccc
Confidence 34689999999999999999999999999999999999999999999885 1 12234578899999999999
Q ss_pred hHHHHhhhh
Q 014376 390 PDIQEADRS 398 (426)
Q Consensus 390 ~di~~~~~~ 398 (426)
.||.+.|..
T Consensus 358 sdi~~l~ke 366 (428)
T KOG0740|consen 358 SDITALCKE 366 (428)
T ss_pred ccHHHHHHH
Confidence 999888654
No 28
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.93 E-value=1.3e-24 Score=218.97 Aligned_cols=215 Identities=26% Similarity=0.395 Sum_probs=174.0
Q ss_pred cchhhhhhhchhhHHHHHHHHHHHH----HHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcc
Q 014376 154 FDGMWESLIYESGLKQRLLHYAASA----LMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQC 229 (426)
Q Consensus 154 ~~~~~~~lv~~~~~k~~L~~~~~~~----~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~ 229 (426)
+.-.|+++.|.++.++.|.+++..+ ..|...|+.+ +++++||||||||||++++++|+.++.++
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~-----p~gvLL~GppGtGKT~lakaia~~l~~~~------- 184 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEP-----PKGVLLYGPPGTGKTLLAKAVAHETNATF------- 184 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCC-----CceEEEECCCCCCHHHHHHHHHHhCCCCE-------
Confidence 4457999999999999999887643 3455566665 78999999999999999999999997554
Q ss_pred eEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhh
Q 014376 230 QLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL 309 (426)
Q Consensus 230 ~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l 309 (426)
+.+.+.++..++.++....+..+|..++. ..|++|+|||+|.+...+.....++. ....+.+..++..++.+
T Consensus 185 --~~v~~~~l~~~~~g~~~~~i~~~f~~a~~-----~~p~il~iDEiD~l~~~~~~~~~~~~-~~~~~~l~~ll~~ld~~ 256 (364)
T TIGR01242 185 --IRVVGSELVRKYIGEGARLVREIFELAKE-----KAPSIIFIDEIDAIAAKRTDSGTSGD-REVQRTLMQLLAELDGF 256 (364)
T ss_pred --EecchHHHHHHhhhHHHHHHHHHHHHHHh-----cCCcEEEhhhhhhhccccccCCCCcc-HHHHHHHHHHHHHhhCC
Confidence 77778888888888888888888887765 47899999999999877654433332 22345667777778877
Q ss_pred cCCCcEEEEEEeCCCCcCCHHHh--cccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhcc
Q 014376 310 KSSPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKL 387 (426)
Q Consensus 310 ~~~~~viVi~TtN~~~~ld~al~--~R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~ 387 (426)
...+++.||+|||.++.+|++++ +||+..++++.|+.++|.+|++.++.... .....++..++..++|+
T Consensus 257 ~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~---------l~~~~~~~~la~~t~g~ 327 (364)
T TIGR01242 257 DPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMK---------LAEDVDLEAIAKMTEGA 327 (364)
T ss_pred CCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCC---------CCccCCHHHHHHHcCCC
Confidence 66788999999999999999998 49999999999999999999998775532 12335789999999999
Q ss_pred CchHHHHhhh
Q 014376 388 SNPDIQEADR 397 (426)
Q Consensus 388 s~~di~~~~~ 397 (426)
+++|++..+.
T Consensus 328 sg~dl~~l~~ 337 (364)
T TIGR01242 328 SGADLKAICT 337 (364)
T ss_pred CHHHHHHHHH
Confidence 9999987754
No 29
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.7e-25 Score=207.06 Aligned_cols=218 Identities=23% Similarity=0.367 Sum_probs=186.1
Q ss_pred cccchhhhhhhchhhHHHHHHHHHHHHH----HHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCC
Q 014376 152 KEFDGMWESLIYESGLKQRLLHYAASAL----MFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYP 227 (426)
Q Consensus 152 ~~~~~~~~~lv~~~~~k~~L~~~~~~~~----~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~ 227 (426)
..++-.+.++-|-.+..++|.+.+..++ .|...|++| +++||+|||||||||.+||++|+..+
T Consensus 170 ekpdvty~dvggckeqieklrevve~pll~perfv~lgidp-----pkgvllygppgtgktl~aravanrtd-------- 236 (435)
T KOG0729|consen 170 EKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDP-----PKGVLLYGPPGTGKTLCARAVANRTD-------- 236 (435)
T ss_pred cCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCC-----CCceEEeCCCCCchhHHHHHHhcccC--------
Confidence 3456677888888888888888877654 566678887 89999999999999999999999875
Q ss_pred cceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhh
Q 014376 228 QCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMD 307 (426)
Q Consensus 228 ~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld 307 (426)
+.++.+-++++..+|+|+..+.++.+|+.++. +..|++|+||||.+...|-+.-.|+. ...++.+-+++++||
T Consensus 237 -acfirvigselvqkyvgegarmvrelf~mart-----kkaciiffdeidaiggarfddg~ggd-nevqrtmleli~qld 309 (435)
T KOG0729|consen 237 -ACFIRVIGSELVQKYVGEGARMVRELFEMART-----KKACIIFFDEIDAIGGARFDDGAGGD-NEVQRTMLELINQLD 309 (435)
T ss_pred -ceEEeehhHHHHHHHhhhhHHHHHHHHHHhcc-----cceEEEEeeccccccCccccCCCCCc-HHHHHHHHHHHHhcc
Confidence 45599999999999999999999999999987 57799999999999988865443433 345678888999999
Q ss_pred hhcCCCcEEEEEEeCCCCcCCHHHh--cccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhh
Q 014376 308 KLKSSPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKE 385 (426)
Q Consensus 308 ~l~~~~~viVi~TtN~~~~ld~al~--~R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~ 385 (426)
++...+|+-|+.+||+|+.+|+|++ +|.|++++|+.|+.+.|..|++-+.+.+. ......+.-+++++.
T Consensus 310 gfdprgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksms---------verdir~ellarlcp 380 (435)
T KOG0729|consen 310 GFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMS---------VERDIRFELLARLCP 380 (435)
T ss_pred CCCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccc---------cccchhHHHHHhhCC
Confidence 9999999999999999999999999 79999999999999999999998877653 234456788999999
Q ss_pred ccCchHHHHhhhh
Q 014376 386 KLSNPDIQEADRS 398 (426)
Q Consensus 386 ~~s~~di~~~~~~ 398 (426)
..++++|+..|..
T Consensus 381 nstgaeirsvcte 393 (435)
T KOG0729|consen 381 NSTGAEIRSVCTE 393 (435)
T ss_pred CCcchHHHHHHHH
Confidence 9999999888753
No 30
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.92 E-value=2.2e-24 Score=210.68 Aligned_cols=154 Identities=19% Similarity=0.307 Sum_probs=130.2
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEE
Q 014376 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVF 270 (426)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~i 270 (426)
+..+++++||||||||||++|+++|++++..+ +.+++.++.++|+|++++.++++|..+........+|||
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~---------i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcV 215 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEP---------IVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSC 215 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe---------EEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeE
Confidence 34479999999999999999999999998665 999999999999999999999999999987656678999
Q ss_pred EEEechhhHHHHhhhhccCCCCCh-hHHHHHHHHHHhhhh------------cCCCcEEEEEEeCCCCcCCHHHhc--cc
Q 014376 271 VLIDEVESLAAARKAALSGSEPSD-SIRVVNALLTQMDKL------------KSSPNVIILTTSNITAAIDIAFVD--RA 335 (426)
Q Consensus 271 llIDEid~l~~~r~~~ls~~e~~~-~~~~~~~ll~~ld~l------------~~~~~viVi~TtN~~~~ld~al~~--R~ 335 (426)
|||||||.++..+.. .+... ...+...|++.+|.+ .....+.||+|||+++.||++|++ ||
T Consensus 216 LFIDEIDA~~g~r~~----~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRf 291 (413)
T PLN00020 216 LFINDLDAGAGRFGT----TQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRM 291 (413)
T ss_pred EEEehhhhcCCCCCC----CCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCC
Confidence 999999999987742 11122 233447899988753 235679999999999999999996 99
Q ss_pred CeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 336 DIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 336 ~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
|..+ ..|+.++|.+|++.+++.
T Consensus 292 Dk~i--~lPd~e~R~eIL~~~~r~ 313 (413)
T PLN00020 292 EKFY--WAPTREDRIGVVHGIFRD 313 (413)
T ss_pred Ccee--CCCCHHHHHHHHHHHhcc
Confidence 9864 589999999999988876
No 31
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.3e-24 Score=217.01 Aligned_cols=192 Identities=25% Similarity=0.426 Sum_probs=165.7
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHh---ccCc
Q 014376 192 SWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEE---ENNL 268 (426)
Q Consensus 192 ~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~---~~~~ 268 (426)
..-+++|||||||||||.+||.|...++.+- | -.+|+.++.++|+|+++.+++++|..+.+-... ....
T Consensus 254 ~HVKGiLLyGPPGTGKTLiARqIGkMLNAre----P----KIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgL 325 (744)
T KOG0741|consen 254 KHVKGILLYGPPGTGKTLIARQIGKMLNARE----P----KIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGL 325 (744)
T ss_pred cceeeEEEECCCCCChhHHHHHHHHHhcCCC----C----cccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCc
Confidence 3468999999999999999999999997653 2 348999999999999999999999998775543 3456
Q ss_pred EEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHh--cccCeEEEeCCCCH
Q 014376 269 VFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTL 346 (426)
Q Consensus 269 ~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~--~R~~~~i~i~~p~~ 346 (426)
.|+++||+|.+..+|.+. ++...-...++|+||..||+...-+|++||+-||+.+.+|+|++ +|+....++..|++
T Consensus 326 HIIIFDEiDAICKqRGS~--~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE 403 (744)
T KOG0741|consen 326 HIIIFDEIDAICKQRGSM--AGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDE 403 (744)
T ss_pred eEEEehhhHHHHHhcCCC--CCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCc
Confidence 899999999999988652 33334456899999999999999999999999999999999999 79999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhccCchHHHHhhhh
Q 014376 347 QARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRS 398 (426)
Q Consensus 347 ~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~s~~di~~~~~~ 398 (426)
..|.+|++-+.+++-..+.+ ..+.++.+++.++..||+++++-.+++
T Consensus 404 ~gRlQIl~IHT~rMre~~~l-----~~dVdl~elA~lTKNfSGAEleglVks 450 (744)
T KOG0741|consen 404 KGRLQILKIHTKRMRENNKL-----SADVDLKELAALTKNFSGAELEGLVKS 450 (744)
T ss_pred cCceEEEEhhhhhhhhcCCC-----CCCcCHHHHHHHhcCCchhHHHHHHHH
Confidence 99999999999988766555 456789999999999999999887654
No 32
>CHL00176 ftsH cell division protein; Validated
Probab=99.92 E-value=1.7e-24 Score=229.98 Aligned_cols=216 Identities=25% Similarity=0.364 Sum_probs=176.1
Q ss_pred cchhhhhhhchhhHHHHHHHHHH---HHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcce
Q 014376 154 FDGMWESLIYESGLKQRLLHYAA---SALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQ 230 (426)
Q Consensus 154 ~~~~~~~lv~~~~~k~~L~~~~~---~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~ 230 (426)
....|++++|.+++|+.+.+.+. .+..|...|... ++++||+||||||||++|+++|+.++.++
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~-----p~gVLL~GPpGTGKT~LAralA~e~~~p~-------- 244 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKI-----PKGVLLVGPPGTGKTLLAKAIAGEAEVPF-------- 244 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCC-----CceEEEECCCCCCHHHHHHHHHHHhCCCe--------
Confidence 34579999999999988776653 344454455443 68899999999999999999999987665
Q ss_pred EEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc
Q 014376 231 LVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK 310 (426)
Q Consensus 231 ~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~ 310 (426)
+.+++.++...+.+.....++.+|..++. ..|+||||||+|.+...+.....+ ........++.|+..++++.
T Consensus 245 -i~is~s~f~~~~~g~~~~~vr~lF~~A~~-----~~P~ILfIDEID~l~~~r~~~~~~-~~~e~~~~L~~LL~~~dg~~ 317 (638)
T CHL00176 245 -FSISGSEFVEMFVGVGAARVRDLFKKAKE-----NSPCIVFIDEIDAVGRQRGAGIGG-GNDEREQTLNQLLTEMDGFK 317 (638)
T ss_pred -eeccHHHHHHHhhhhhHHHHHHHHHHHhc-----CCCcEEEEecchhhhhcccCCCCC-CcHHHHHHHHHHHhhhcccc
Confidence 88888888777777777788889988876 589999999999998876543322 22344578899999999988
Q ss_pred CCCcEEEEEEeCCCCcCCHHHh--cccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhccC
Q 014376 311 SSPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLS 388 (426)
Q Consensus 311 ~~~~viVi~TtN~~~~ld~al~--~R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~s 388 (426)
...+++||++||.++.+|++++ +||+..++++.|+.++|.+||+.++++.. .....++..++..+.|++
T Consensus 318 ~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~---------~~~d~~l~~lA~~t~G~s 388 (638)
T CHL00176 318 GNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK---------LSPDVSLELIARRTPGFS 388 (638)
T ss_pred CCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc---------cchhHHHHHHHhcCCCCC
Confidence 8889999999999999999998 59999999999999999999999987621 223457889999999999
Q ss_pred chHHHHhhhh
Q 014376 389 NPDIQEADRS 398 (426)
Q Consensus 389 ~~di~~~~~~ 398 (426)
++|++.+++.
T Consensus 389 gaDL~~lvne 398 (638)
T CHL00176 389 GADLANLLNE 398 (638)
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 33
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.91 E-value=1.9e-23 Score=223.86 Aligned_cols=218 Identities=21% Similarity=0.355 Sum_probs=179.8
Q ss_pred cccchhhhhhhchhhHHHHHHHHHHH---HHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCc
Q 014376 152 KEFDGMWESLIYESGLKQRLLHYAAS---ALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQ 228 (426)
Q Consensus 152 ~~~~~~~~~lv~~~~~k~~L~~~~~~---~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~ 228 (426)
......|+++.+.+..++++.+.+.. +..+...+.. .+++++|+||||||||++++++++.++.++
T Consensus 145 ~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~-----~~~gill~G~~G~GKt~~~~~~a~~~~~~f------ 213 (644)
T PRK10733 145 DQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGK-----IPKGVLMVGPPGTGKTLLAKAIAGEAKVPF------ 213 (644)
T ss_pred hhhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCC-----CCCcEEEECCCCCCHHHHHHHHHHHcCCCE------
Confidence 45567899999999998888776543 2334433333 256799999999999999999999997665
Q ss_pred ceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhh
Q 014376 229 CQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK 308 (426)
Q Consensus 229 ~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~ 308 (426)
+.+++.++...+.+.....++.+|..++. ..|+||||||+|.+..++...+.++ .....+.++.+|..||+
T Consensus 214 ---~~is~~~~~~~~~g~~~~~~~~~f~~a~~-----~~P~IifIDEiD~l~~~r~~~~~g~-~~~~~~~ln~lL~~mdg 284 (644)
T PRK10733 214 ---FTISGSDFVEMFVGVGASRVRDMFEQAKK-----AAPCIIFIDEIDAVGRQRGAGLGGG-HDEREQTLNQMLVEMDG 284 (644)
T ss_pred ---EEEehHHhHHhhhcccHHHHHHHHHHHHh-----cCCcEEEehhHhhhhhccCCCCCCC-chHHHHHHHHHHHhhhc
Confidence 88999888888888888889999998866 4899999999999998876544333 23445788999999999
Q ss_pred hcCCCcEEEEEEeCCCCcCCHHHh--cccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhc
Q 014376 309 LKSSPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEK 386 (426)
Q Consensus 309 l~~~~~viVi~TtN~~~~ld~al~--~R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~ 386 (426)
+.....++||+|||.++.+|++++ +||++.++++.|+.++|.+||+.++++.. .....++..+++.+.|
T Consensus 285 ~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~---------l~~~~d~~~la~~t~G 355 (644)
T PRK10733 285 FEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP---------LAPDIDAAIIARGTPG 355 (644)
T ss_pred ccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCC---------CCCcCCHHHHHhhCCC
Confidence 988889999999999999999999 49999999999999999999999887642 2344678889999999
Q ss_pred cCchHHHHhhhh
Q 014376 387 LSNPDIQEADRS 398 (426)
Q Consensus 387 ~s~~di~~~~~~ 398 (426)
|+++|+++.++.
T Consensus 356 ~sgadl~~l~~e 367 (644)
T PRK10733 356 FSGADLANLVNE 367 (644)
T ss_pred CCHHHHHHHHHH
Confidence 999999998764
No 34
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.3e-23 Score=198.40 Aligned_cols=212 Identities=26% Similarity=0.372 Sum_probs=172.4
Q ss_pred hhhhhhchhhHHHHHHHHHH----HHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEE
Q 014376 157 MWESLIYESGLKQRLLHYAA----SALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLV 232 (426)
Q Consensus 157 ~~~~lv~~~~~k~~L~~~~~----~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i 232 (426)
.|+++.|.-.+...+.+-+. .+.+|...|+.+ +.+++||||||+|||.+|+++|..++..+ +
T Consensus 130 s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~-----Pkg~ll~GppGtGKTlla~~Vaa~mg~nf---------l 195 (388)
T KOG0651|consen 130 SFENVGGLFYQIRELREVIELPLTNPELFLRVGIKP-----PKGLLLYGPPGTGKTLLARAVAATMGVNF---------L 195 (388)
T ss_pred CHHHhCChHHHHHHHHhheEeeccCchhccccCCCC-----CceeEEeCCCCCchhHHHHHHHHhcCCce---------E
Confidence 46677777666666666544 445666667665 89999999999999999999999998766 8
Q ss_pred EEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCC
Q 014376 233 EVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS 312 (426)
Q Consensus 233 ~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~ 312 (426)
.+.++.+.+++.||+.+.++++|..+++ +.|||+|+||||....++.+....+ ...-.+.+-.|+++|+++..-
T Consensus 196 ~v~ss~lv~kyiGEsaRlIRemf~yA~~-----~~pciifmdeiDAigGRr~se~Ts~-dreiqrTLMeLlnqmdgfd~l 269 (388)
T KOG0651|consen 196 KVVSSALVDKYIGESARLIRDMFRYARE-----VIPCIIFMDEIDAIGGRRFSEGTSS-DREIQRTLMELLNQMDGFDTL 269 (388)
T ss_pred EeeHhhhhhhhcccHHHHHHHHHHHHhh-----hCceEEeehhhhhhccEEeccccch-hHHHHHHHHHHHHhhccchhc
Confidence 9999999999999999999999999998 5889999999999998773322111 123345566677778887778
Q ss_pred CcEEEEEEeCCCCcCCHHHh--cccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhccCch
Q 014376 313 PNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNP 390 (426)
Q Consensus 313 ~~viVi~TtN~~~~ld~al~--~R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~s~~ 390 (426)
+.+-+|+|+|+++.||++++ +|.++.+.+|.|+...|..|++-+.+.+...|.+ +...+..+.++++++
T Consensus 270 ~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Gei---------d~eaivK~~d~f~ga 340 (388)
T KOG0651|consen 270 HRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEI---------DDEAILKLVDGFNGA 340 (388)
T ss_pred ccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccc---------cHHHHHHHHhccChH
Confidence 89999999999999999999 7999999999999999999988877776554444 357788889999999
Q ss_pred HHHHhhh
Q 014376 391 DIQEADR 397 (426)
Q Consensus 391 di~~~~~ 397 (426)
|+++.|.
T Consensus 341 d~rn~~t 347 (388)
T KOG0651|consen 341 DLRNVCT 347 (388)
T ss_pred HHhhhcc
Confidence 9887765
No 35
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.89 E-value=3e-22 Score=218.59 Aligned_cols=212 Identities=28% Similarity=0.434 Sum_probs=176.3
Q ss_pred chhhhhhhchhhHHHHHHHHHHHH----HHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcce
Q 014376 155 DGMWESLIYESGLKQRLLHYAASA----LMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQ 230 (426)
Q Consensus 155 ~~~~~~lv~~~~~k~~L~~~~~~~----~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~ 230 (426)
+-.|+++.|.+.+++.+.+++..+ ..|...|+.+ ++++|||||||||||++++++|+.++.++
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~-----~~giLL~GppGtGKT~laraia~~~~~~~-------- 240 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEP-----PKGVLLYGPPGTGKTLLAKAVANEAGAYF-------- 240 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCC-----CceEEEECCCCCChHHHHHHHHHHhCCeE--------
Confidence 346999999999999998887654 3455566654 78999999999999999999999986544
Q ss_pred EEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc
Q 014376 231 LVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK 310 (426)
Q Consensus 231 ~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~ 310 (426)
+.+++.++.+++.++....+..+|+.+.. ..|++|+|||+|.+..++... ......++++.|++.++.+.
T Consensus 241 -i~i~~~~i~~~~~g~~~~~l~~lf~~a~~-----~~p~il~iDEid~l~~~r~~~----~~~~~~~~~~~Ll~~ld~l~ 310 (733)
T TIGR01243 241 -ISINGPEIMSKYYGESEERLREIFKEAEE-----NAPSIIFIDEIDAIAPKREEV----TGEVEKRVVAQLLTLMDGLK 310 (733)
T ss_pred -EEEecHHHhcccccHHHHHHHHHHHHHHh-----cCCcEEEeehhhhhcccccCC----cchHHHHHHHHHHHHhhccc
Confidence 88999999999999999999999998876 478999999999998765321 11234678899999999998
Q ss_pred CCCcEEEEEEeCCCCcCCHHHhc--ccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhccC
Q 014376 311 SSPNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLS 388 (426)
Q Consensus 311 ~~~~viVi~TtN~~~~ld~al~~--R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~s 388 (426)
..+.++||++||.++.+|+++++ ||+..++++.|+.++|.+|++.+..... .....++..++..+.||+
T Consensus 311 ~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~---------l~~d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 311 GRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMP---------LAEDVDLDKLAEVTHGFV 381 (733)
T ss_pred cCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCC---------CccccCHHHHHHhCCCCC
Confidence 88899999999999999999985 9999999999999999999996654321 233457889999999999
Q ss_pred chHHHHhhhh
Q 014376 389 NPDIQEADRS 398 (426)
Q Consensus 389 ~~di~~~~~~ 398 (426)
++++...+..
T Consensus 382 gadl~~l~~~ 391 (733)
T TIGR01243 382 GADLAALAKE 391 (733)
T ss_pred HHHHHHHHHH
Confidence 9999887543
No 36
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.88 E-value=3.4e-22 Score=223.96 Aligned_cols=176 Identities=14% Similarity=0.194 Sum_probs=135.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccc----------c-----------------
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWF----------S----------------- 245 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~----------~----------------- 245 (426)
.+++|||+||||||||.|||++|+..+.++ +.+++.++.+++. +
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~VPF---------IsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~ 1699 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSYVPF---------ITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDT 1699 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcCCce---------EEEEHHHHhhcccccccccccccccccccccccccccccch
Confidence 478999999999999999999999998777 7777777665430 1
Q ss_pred --------------ch--HHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhh
Q 014376 246 --------------ES--GKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL 309 (426)
Q Consensus 246 --------------e~--~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l 309 (426)
+. ...++.+|+.|+. .+||||+|||||.+..+. .....++.|++.|++.
T Consensus 1700 e~~e~~n~~~~~m~~~e~~~rIr~lFelARk-----~SPCIIFIDEIDaL~~~d----------s~~ltL~qLLneLDg~ 1764 (2281)
T CHL00206 1700 ELLTMMNALTMDMMPKIDRFYITLQFELAKA-----MSPCIIWIPNIHDLNVNE----------SNYLSLGLLVNSLSRD 1764 (2281)
T ss_pred hhhhhcchhhhhhhhhhhHHHHHHHHHHHHH-----CCCeEEEEEchhhcCCCc----------cceehHHHHHHHhccc
Confidence 11 1236778888887 499999999999997531 1112478899999875
Q ss_pred c---CCCcEEEEEEeCCCCcCCHHHh--cccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHh
Q 014376 310 K---SSPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILK 384 (426)
Q Consensus 310 ~---~~~~viVi~TtN~~~~ld~al~--~R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~ 384 (426)
. ...+++|||+||+|+.+|+|++ +|||+.|+++.|+..+|.+++...+.. .+.- ......++..++..+
T Consensus 1765 ~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~t---kg~~---L~~~~vdl~~LA~~T 1838 (2281)
T CHL00206 1765 CERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYT---RGFH---LEKKMFHTNGFGSIT 1838 (2281)
T ss_pred cccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhh---cCCC---CCcccccHHHHHHhC
Confidence 3 3467999999999999999999 599999999999999999988754311 1110 011224688999999
Q ss_pred hccCchHHHHhhhh
Q 014376 385 EKLSNPDIQEADRS 398 (426)
Q Consensus 385 ~~~s~~di~~~~~~ 398 (426)
.|++++|++..++.
T Consensus 1839 ~GfSGADLanLvNE 1852 (2281)
T CHL00206 1839 MGSNARDLVALTNE 1852 (2281)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999998764
No 37
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=6.3e-22 Score=203.21 Aligned_cols=181 Identities=30% Similarity=0.405 Sum_probs=160.4
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEE
Q 014376 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVF 270 (426)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~i 270 (426)
+.+++++|+|||||+|||.+++++|++.+. .++.+++.++.+++.+++++.+++.|+.+... ..|.+
T Consensus 215 ~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a---------~~~~i~~peli~k~~gEte~~LR~~f~~a~k~----~~psi 281 (693)
T KOG0730|consen 215 IKPPRGLLLYGPPGTGKTFLVRAVANEYGA---------FLFLINGPELISKFPGETESNLRKAFAEALKF----QVPSI 281 (693)
T ss_pred CCCCCCccccCCCCCChHHHHHHHHHHhCc---------eeEecccHHHHHhcccchHHHHHHHHHHHhcc----CCCee
Confidence 445899999999999999999999999964 45999999999999999999999999999874 23999
Q ss_pred EEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhc-ccCeEEEeCCCCHHHH
Q 014376 271 VLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVD-RADIKAYVGPPTLQAR 349 (426)
Q Consensus 271 llIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~-R~~~~i~i~~p~~~~r 349 (426)
++|||+|.+.+++...- ....+++.++++.+|.++...+++|++++|+++.||+++++ |||..+.++.|+..+|
T Consensus 282 i~IdEld~l~p~r~~~~-----~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~R 356 (693)
T KOG0730|consen 282 IFIDELDALCPKREGAD-----DVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGR 356 (693)
T ss_pred EeHHhHhhhCCcccccc-----hHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhcCCCcceeeecCCCchhH
Confidence 99999999998774321 13578999999999999989999999999999999999995 9999999999999999
Q ss_pred HHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhccCchHHHHhhhh
Q 014376 350 YEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRS 398 (426)
Q Consensus 350 ~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~s~~di~~~~~~ 398 (426)
.+|++.+.+.+. .....++..++..+.||.++|+...|+.
T Consensus 357 ldIl~~l~k~~~---------~~~~~~l~~iA~~thGyvGaDL~~l~~e 396 (693)
T KOG0730|consen 357 LDILRVLTKKMN---------LLSDVDLEDIAVSTHGYVGADLAALCRE 396 (693)
T ss_pred HHHHHHHHHhcC---------CcchhhHHHHHHHccchhHHHHHHHHHH
Confidence 999999998864 2345688999999999999999988765
No 38
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.8e-22 Score=216.33 Aligned_cols=223 Identities=25% Similarity=0.335 Sum_probs=184.5
Q ss_pred cchhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEE
Q 014376 154 FDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVE 233 (426)
Q Consensus 154 ~~~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~ 233 (426)
-.--|+++.|.+++++.|++.+..+++|.+. +.++.|..++++|+|||||||||..++++|..+.... -..-++.
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~-f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~----~kisffm 334 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEF-FDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGN----RKISFFM 334 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhH-hhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccc----cccchhh
Confidence 3356999999999999999999988887763 3445566689999999999999999999999985322 2233455
Q ss_pred EeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCC
Q 014376 234 VNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSP 313 (426)
Q Consensus 234 i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~ 313 (426)
-.+.+..++|+|+.++..+.+|+.++. ..|.|+|+||||-|++.|.+. +..-...++..||..|+++...+
T Consensus 335 rkgaD~lskwvgEaERqlrllFeeA~k-----~qPSIIffdeIdGlapvrSsk----qEqih~SIvSTLLaLmdGldsRg 405 (1080)
T KOG0732|consen 335 RKGADCLSKWVGEAERQLRLLFEEAQK-----TQPSIIFFDEIDGLAPVRSSK----QEQIHASIVSTLLALMDGLDSRG 405 (1080)
T ss_pred hcCchhhccccCcHHHHHHHHHHHHhc-----cCceEEeccccccccccccch----HHHhhhhHHHHHHHhccCCCCCC
Confidence 667888999999999999999999998 599999999999999877432 22334568899999999999999
Q ss_pred cEEEEEEeCCCCcCCHHHh--cccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhccCchH
Q 014376 314 NVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPD 391 (426)
Q Consensus 314 ~viVi~TtN~~~~ld~al~--~R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~s~~d 391 (426)
.++||++||+++.+|+|++ .||++.++++.|+.++|.+|+..+..+-. . ......+..++..+.||-++|
T Consensus 406 qVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~--~------~i~~~l~~~la~~t~gy~gaD 477 (1080)
T KOG0732|consen 406 QVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWE--P------PISRELLLWLAEETSGYGGAD 477 (1080)
T ss_pred ceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCC--C------CCCHHHHHHHHHhccccchHH
Confidence 9999999999999999997 79999999999999999999987775532 1 122335678999999999999
Q ss_pred HHHhhhh
Q 014376 392 IQEADRS 398 (426)
Q Consensus 392 i~~~~~~ 398 (426)
++..|..
T Consensus 478 lkaLCTe 484 (1080)
T KOG0732|consen 478 LKALCTE 484 (1080)
T ss_pred HHHHHHH
Confidence 9888754
No 39
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=3.6e-20 Score=180.49 Aligned_cols=233 Identities=19% Similarity=0.240 Sum_probs=161.3
Q ss_pred ccchhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEE
Q 014376 153 EFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLV 232 (426)
Q Consensus 153 ~~~~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i 232 (426)
...+.++++|....++++|.+.+..........-+. ++|++|||||||||+++|.||+..|..+ .
T Consensus 349 ~gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~apf------RNilfyGPPGTGKTm~ArelAr~SGlDY---------A 413 (630)
T KOG0742|consen 349 RGKDPLEGVILHPSLEKRIEDLAIATANTKKHQAPF------RNILFYGPPGTGKTMFARELARHSGLDY---------A 413 (630)
T ss_pred cCCCCcCCeecCHHHHHHHHHHHHHhcccccccchh------hheeeeCCCCCCchHHHHHHHhhcCCce---------e
Confidence 444568899999999999998877654433322222 7899999999999999999999998765 4
Q ss_pred EEecccccccccc-chHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcC
Q 014376 233 EVNAHSLFSKWFS-ESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS 311 (426)
Q Consensus 233 ~i~~~~l~~~~~~-e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~ 311 (426)
.+.+.++.- .| .....+.++|+-++. .....+|||||+|.+.-.|... ....+....+|+||---. ..
T Consensus 414 ~mTGGDVAP--lG~qaVTkiH~lFDWakk----S~rGLllFIDEADAFLceRnkt---ymSEaqRsaLNAlLfRTG--dq 482 (630)
T KOG0742|consen 414 IMTGGDVAP--LGAQAVTKIHKLFDWAKK----SRRGLLLFIDEADAFLCERNKT---YMSEAQRSALNALLFRTG--DQ 482 (630)
T ss_pred hhcCCCccc--cchHHHHHHHHHHHHHhh----cccceEEEehhhHHHHHHhchh---hhcHHHHHHHHHHHHHhc--cc
Confidence 455555421 12 223457778887765 3567899999999999888542 233344567777653321 13
Q ss_pred CCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHH-HhhccCch
Q 014376 312 SPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSI-LKEKLSNP 390 (426)
Q Consensus 312 ~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~-~~~~~s~~ 390 (426)
...++++.+||.|..+|.++-+|+|..++||.|..++|..++..++.+.+........ ...+..+-. ..+.+...
T Consensus 483 SrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~----~~~~~~lfkk~sQ~i~l~ 558 (630)
T KOG0742|consen 483 SRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGK----PGKWSHLFKKESQRIKLA 558 (630)
T ss_pred ccceEEEeccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCC----CchhhHHHhhhhheeeec
Confidence 4567888889999999999999999999999999999999999999998754333221 112222211 11222111
Q ss_pred HHHHhhhhHHHHHHHHHHHHHcccCCCcceee
Q 014376 391 DIQEADRSQHFYKQLLEAAEACEVRNKMFHLI 422 (426)
Q Consensus 391 di~~~~~~~~~~~~L~~~a~~~~glsgr~~~~ 422 (426)
. . ...+.+-++|++.+|||||+..-
T Consensus 559 ~---~----~t~~~~~EaAkkTeGfSGREiak 583 (630)
T KOG0742|consen 559 G---F----DTGRKCSEAAKKTEGFSGREIAK 583 (630)
T ss_pred c---c----hHHHHHHHHHHhccCCcHHHHHH
Confidence 1 1 34556788888888888887543
No 40
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.82 E-value=2.2e-19 Score=153.56 Aligned_cols=130 Identities=35% Similarity=0.546 Sum_probs=110.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEech
Q 014376 197 VLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEV 276 (426)
Q Consensus 197 vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEi 276 (426)
+||+||||||||++++.+|+.++.++ +.+++.++.+.+.++..+.+..+|++++.. ..++|++|||+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~---------~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~vl~iDe~ 67 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPF---------IEIDGSELISSYAGDSEQKIRDFFKKAKKS----AKPCVLFIDEI 67 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEE---------EEEETTHHHTSSTTHHHHHHHHHHHHHHHT----STSEEEEEETG
T ss_pred CEEECcCCCCeeHHHHHHHhhccccc---------cccccccccccccccccccccccccccccc----ccceeeeeccc
Confidence 68999999999999999999997554 999999999888889999999999998763 13899999999
Q ss_pred hhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCC-CcEEEEEEeCCCCcCCHHHh-cccCeEEEeCC
Q 014376 277 ESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS-PNVIILTTSNITAAIDIAFV-DRADIKAYVGP 343 (426)
Q Consensus 277 d~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~-~~viVi~TtN~~~~ld~al~-~R~~~~i~i~~ 343 (426)
|.+.... ...........++.++..++..... .+++||+|+|..+.++++++ +||+..++++.
T Consensus 68 d~l~~~~----~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 68 DKLFPKS----QPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp GGTSHHC----STSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred hhccccc----ccccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 9998865 2233445577889999999987665 56999999999999999999 99999998873
No 41
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.81 E-value=9e-19 Score=168.62 Aligned_cols=182 Identities=18% Similarity=0.245 Sum_probs=135.3
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHH---HhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEE
Q 014376 157 MWESLIYESGLKQRLLHYAASALM---FAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVE 233 (426)
Q Consensus 157 ~~~~lv~~~~~k~~L~~~~~~~~~---~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~ 233 (426)
-.++++|.+++|+.+.+++..... ....|..+. ....+++|+|||||||||+|+++|+.+... ...+...+++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~--~~~~~vll~GppGtGKTtlA~~ia~~l~~~--~~~~~~~~v~ 79 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTS--KQVLHMIFKGNPGTGKTTVARILGKLFKEM--NVLSKGHLIE 79 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCC--CCcceEEEEcCCCCCHHHHHHHHHHHHHhc--CcccCCceEE
Confidence 457899999999999988766433 233555431 223579999999999999999999987321 1234567889
Q ss_pred EeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCC
Q 014376 234 VNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSP 313 (426)
Q Consensus 234 i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~ 313 (426)
+++.++.++|+++....+..+|..+. .+||||||++.|.. +++.......++.++..++.. ..
T Consensus 80 ~~~~~l~~~~~g~~~~~~~~~~~~a~--------~~VL~IDE~~~L~~-------~~~~~~~~~~i~~Ll~~~e~~--~~ 142 (261)
T TIGR02881 80 VERADLVGEYIGHTAQKTREVIKKAL--------GGVLFIDEAYSLAR-------GGEKDFGKEAIDTLVKGMEDN--RN 142 (261)
T ss_pred ecHHHhhhhhccchHHHHHHHHHhcc--------CCEEEEechhhhcc-------CCccchHHHHHHHHHHHHhcc--CC
Confidence 99999999999998888887776643 47999999999853 222223345677888887763 34
Q ss_pred cEEEEEEeCCCC-----cCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 314 NVIILTTSNITA-----AIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 314 ~viVi~TtN~~~-----~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
.++++++++..+ .+++++.+||+..+.+++++.+++.+|++.++.+
T Consensus 143 ~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 143 EFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred CEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 455555543322 2588999999999999999999999999998866
No 42
>CHL00181 cbbX CbbX; Provisional
Probab=99.79 E-value=2.2e-18 Score=167.67 Aligned_cols=186 Identities=18% Similarity=0.197 Sum_probs=137.6
Q ss_pred chhhhhhhchhhHHHHHHHHHHH---HHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceE
Q 014376 155 DGMWESLIYESGLKQRLLHYAAS---ALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQL 231 (426)
Q Consensus 155 ~~~~~~lv~~~~~k~~L~~~~~~---~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~ 231 (426)
..++++++|.+++|+++.+++.. ...+...|+.+ ...+.+++|+||||||||++|+++|+.+... +..+...+
T Consensus 19 ~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~--~~~~~~ill~G~pGtGKT~lAr~la~~~~~~--g~~~~~~~ 94 (287)
T CHL00181 19 DILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTS--SNPGLHMSFTGSPGTGKTTVALKMADILYKL--GYIKKGHL 94 (287)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCC--CCCCceEEEECCCCCCHHHHHHHHHHHHHHc--CCCCCCce
Confidence 35677899999999998887654 23344566654 2235679999999999999999999987421 11234568
Q ss_pred EEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcC
Q 014376 232 VEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS 311 (426)
Q Consensus 232 i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~ 311 (426)
+++++.++.+.+++++...+..+|.++ .++||||||++.+...+ ++.......++.|+..|+..
T Consensus 95 ~~v~~~~l~~~~~g~~~~~~~~~l~~a--------~ggVLfIDE~~~l~~~~------~~~~~~~e~~~~L~~~me~~-- 158 (287)
T CHL00181 95 LTVTRDDLVGQYIGHTAPKTKEVLKKA--------MGGVLFIDEAYYLYKPD------NERDYGSEAIEILLQVMENQ-- 158 (287)
T ss_pred EEecHHHHHHHHhccchHHHHHHHHHc--------cCCEEEEEccchhccCC------CccchHHHHHHHHHHHHhcC--
Confidence 999999988888888776666666654 34799999999985421 12223456778888888753
Q ss_pred CCcEEEEEEeCCCC-----cCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHHH
Q 014376 312 SPNVIILTTSNITA-----AIDIAFVDRADIKAYVGPPTLQARYEILRSCLQEL 360 (426)
Q Consensus 312 ~~~viVi~TtN~~~-----~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~l 360 (426)
..+++||++++... .++++|.+||+..++|++++.+++.+|++.++++.
T Consensus 159 ~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~ 212 (287)
T CHL00181 159 RDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQ 212 (287)
T ss_pred CCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHh
Confidence 35667777765322 23699999999999999999999999999999875
No 43
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=4.5e-18 Score=169.20 Aligned_cols=202 Identities=25% Similarity=0.356 Sum_probs=145.4
Q ss_pred hhhhhhhchhhHHHHH----HHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceE
Q 014376 156 GMWESLIYESGLKQRL----LHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQL 231 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L----~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~ 231 (426)
..|+.|+.++++|+.| ..|+.....|.+.|. +|.|++|||||||||||+++-|+|+.++...
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGk-----awKRGYLLYGPPGTGKSS~IaAmAn~L~ydI--------- 263 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGK-----AWKRGYLLYGPPGTGKSSFIAAMANYLNYDI--------- 263 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCc-----chhccceeeCCCCCCHHHHHHHHHhhcCCce---------
Confidence 7899999998877765 466677778888884 4899999999999999999999999997544
Q ss_pred EEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhcc---CCCCChhHHHHHHHHHHhhh
Q 014376 232 VEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALS---GSEPSDSIRVVNALLTQMDK 308 (426)
Q Consensus 232 i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls---~~e~~~~~~~~~~ll~~ld~ 308 (426)
+.++-.+... ... ++ .++.......||+|++||.-..-+..... +.+...+.-.+..||+.+|+
T Consensus 264 ydLeLt~v~~-----n~d-Lr-------~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDG 330 (457)
T KOG0743|consen 264 YDLELTEVKL-----DSD-LR-------HLLLATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDG 330 (457)
T ss_pred EEeeeccccC-----cHH-HH-------HHHHhCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhcc
Confidence 3333333211 111 23 33333356689999999987653332222 11111334577889999999
Q ss_pred hcCCC--cEEEEEEeCCCCcCCHHHhc--ccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHh
Q 014376 309 LKSSP--NVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILK 384 (426)
Q Consensus 309 l~~~~--~viVi~TtN~~~~ld~al~~--R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~ 384 (426)
+.... --|||.|||..+.||||+++ |.|.+|+++.-+.++-..+++.++.--. +.....++.+..
T Consensus 331 lwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~-----------~h~L~~eie~l~ 399 (457)
T KOG0743|consen 331 LWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE-----------DHRLFDEIERLI 399 (457)
T ss_pred ccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC-----------CcchhHHHHHHh
Confidence 98765 67888899999999999995 9999999999999999999888885410 122345566665
Q ss_pred hcc--CchHHHHh
Q 014376 385 EKL--SNPDIQEA 395 (426)
Q Consensus 385 ~~~--s~~di~~~ 395 (426)
++. +|+++.+.
T Consensus 400 ~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 400 EETEVTPAQVAEE 412 (457)
T ss_pred hcCccCHHHHHHH
Confidence 555 78887654
No 44
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.76 E-value=1.3e-17 Score=162.34 Aligned_cols=185 Identities=18% Similarity=0.186 Sum_probs=137.7
Q ss_pred hhhhhhhchhhHHHHHHHHHHH---HHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEE
Q 014376 156 GMWESLIYESGLKQRLLHYAAS---ALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLV 232 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~---~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i 232 (426)
.+.++++|.+++|+++.+.+.. ...+...|+.+ ...+.+++|+||||||||++|+++|+.+.... ..+...++
T Consensus 19 ~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~--~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g--~~~~~~~v 94 (284)
T TIGR02880 19 QLDRELIGLKPVKTRIREIAALLLVERLRQRLGLAS--AAPTLHMSFTGNPGTGKTTVALRMAQILHRLG--YVRKGHLV 94 (284)
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCc--CCCCceEEEEcCCCCCHHHHHHHHHHHHHHcC--CcccceEE
Confidence 3445799999999998876554 33455567654 12355899999999999999999999885321 12345688
Q ss_pred EEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCC
Q 014376 233 EVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS 312 (426)
Q Consensus 233 ~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~ 312 (426)
.+++.++.+.+++++...+..+|+++ .+++|||||++.+...+ ++......+++.|++.|+. ..
T Consensus 95 ~v~~~~l~~~~~g~~~~~~~~~~~~a--------~~gvL~iDEi~~L~~~~------~~~~~~~~~~~~Ll~~le~--~~ 158 (284)
T TIGR02880 95 SVTRDDLVGQYIGHTAPKTKEILKRA--------MGGVLFIDEAYYLYRPD------NERDYGQEAIEILLQVMEN--QR 158 (284)
T ss_pred EecHHHHhHhhcccchHHHHHHHHHc--------cCcEEEEechhhhccCC------CccchHHHHHHHHHHHHhc--CC
Confidence 99998888888888877677666664 34899999999885321 1222345677888888875 33
Q ss_pred CcEEEEEEeCCC--Cc---CCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHHH
Q 014376 313 PNVIILTTSNIT--AA---IDIAFVDRADIKAYVGPPTLQARYEILRSCLQEL 360 (426)
Q Consensus 313 ~~viVi~TtN~~--~~---ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~l 360 (426)
.+++||++++.. +. ++++|.+||+..+++++++.+++.+|++.++++.
T Consensus 159 ~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~ 211 (284)
T TIGR02880 159 DDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQ 211 (284)
T ss_pred CCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHh
Confidence 567777776543 22 4899999999999999999999999999999884
No 45
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.71 E-value=1.1e-16 Score=147.57 Aligned_cols=158 Identities=21% Similarity=0.279 Sum_probs=102.9
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEec
Q 014376 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (426)
Q Consensus 157 ~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (426)
.|++++|++.++..+.-++..+... ...+ .+++||||||+||||||+.||++++..+ ..+++
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r-~~~l--------~h~lf~GPPG~GKTTLA~IIA~e~~~~~---------~~~sg 83 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKR-GEAL--------DHMLFYGPPGLGKTTLARIIANELGVNF---------KITSG 83 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCT-TS-----------EEEEESSTTSSHHHHHHHHHHHCT--E---------EEEEC
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhc-CCCc--------ceEEEECCCccchhHHHHHHHhccCCCe---------Eeccc
Confidence 5889999999999988776543211 1112 3599999999999999999999998665 55555
Q ss_pred cccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcC-----
Q 014376 237 HSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS----- 311 (426)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~----- 311 (426)
..+- ....+..++... ....|||||||+.+... ....|+..|+...-
T Consensus 84 ~~i~------k~~dl~~il~~l-------~~~~ILFIDEIHRlnk~---------------~qe~LlpamEd~~idiiiG 135 (233)
T PF05496_consen 84 PAIE------KAGDLAAILTNL-------KEGDILFIDEIHRLNKA---------------QQEILLPAMEDGKIDIIIG 135 (233)
T ss_dssp CC--------SCHHHHHHHHT---------TT-EEEECTCCC--HH---------------HHHHHHHHHHCSEEEEEBS
T ss_pred hhhh------hHHHHHHHHHhc-------CCCcEEEEechhhccHH---------------HHHHHHHHhccCeEEEEec
Confidence 3321 122233333332 24579999999999874 44567777774321
Q ss_pred -----------CCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHHH
Q 014376 312 -----------SPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQEL 360 (426)
Q Consensus 312 -----------~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~l 360 (426)
-+++.+|++|++...+...+++||++...+..++.++..+|++.....+
T Consensus 136 ~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l 195 (233)
T PF05496_consen 136 KGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARIL 195 (233)
T ss_dssp SSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCT
T ss_pred cccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHh
Confidence 1458889999999999999999999999999999999999998766543
No 46
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.69 E-value=4.9e-16 Score=170.46 Aligned_cols=166 Identities=25% Similarity=0.343 Sum_probs=117.8
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccc
Q 014376 159 ESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (426)
Q Consensus 159 ~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (426)
++++|.+++|+++.+++....... +. .+.+++|+||||||||++|+++|+.++.++ +.++...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~--~~------~~~~lll~GppG~GKT~lAk~iA~~l~~~~---------~~i~~~~ 382 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRG--KM------KGPILCLVGPPGVGKTSLGKSIAKALNRKF---------VRFSLGG 382 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhc--CC------CCceEEEECCCCCCHHHHHHHHHHHhcCCe---------EEEeCCC
Confidence 457788999999999876543222 11 245799999999999999999999997665 4444332
Q ss_pred c---------ccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhh-
Q 014376 239 L---------FSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK- 308 (426)
Q Consensus 239 l---------~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~- 308 (426)
+ ...|.+.....+.+.|..+.. ...|++|||||.+....+ + ...++|+..||.
T Consensus 383 ~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~------~~~villDEidk~~~~~~-----~------~~~~aLl~~ld~~ 445 (775)
T TIGR00763 383 VRDEAEIRGHRRTYVGAMPGRIIQGLKKAKT------KNPLFLLDEIDKIGSSFR-----G------DPASALLEVLDPE 445 (775)
T ss_pred cccHHHHcCCCCceeCCCCchHHHHHHHhCc------CCCEEEEechhhcCCccC-----C------CHHHHHHHhcCHH
Confidence 2 124455544445555554432 334899999999974221 1 124567776653
Q ss_pred ----hc--------CCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 309 ----LK--------SSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 309 ----l~--------~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
+. ...++++|+|+|..+.++++|++|| ..+.++.|+.+++.+|++.++..
T Consensus 446 ~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~R~-~vi~~~~~~~~e~~~I~~~~l~~ 507 (775)
T TIGR00763 446 QNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLDRM-EVIELSGYTEEEKLEIAKKYLIP 507 (775)
T ss_pred hcCccccccCCceeccCCEEEEEecCCchhCCHHHhCCe-eEEecCCCCHHHHHHHHHHHHHH
Confidence 11 1257899999999999999999999 47899999999999999987743
No 47
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.63 E-value=3.3e-15 Score=140.52 Aligned_cols=159 Identities=23% Similarity=0.354 Sum_probs=117.6
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEe
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVN 235 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~ 235 (426)
..|++++|++++|++|.-++..+..... -+ .++||+||||.||||||..+|++++..+ .+.
T Consensus 23 ~~l~efiGQ~~vk~~L~ifI~AAk~r~e-~l--------DHvLl~GPPGlGKTTLA~IIA~Emgvn~----------k~t 83 (332)
T COG2255 23 KTLDEFIGQEKVKEQLQIFIKAAKKRGE-AL--------DHVLLFGPPGLGKTTLAHIIANELGVNL----------KIT 83 (332)
T ss_pred ccHHHhcChHHHHHHHHHHHHHHHhcCC-Cc--------CeEEeeCCCCCcHHHHHHHHHHHhcCCe----------Eec
Confidence 4689999999999999999887654322 22 4699999999999999999999998654 222
Q ss_pred ccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcC----
Q 014376 236 AHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS---- 311 (426)
Q Consensus 236 ~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~---- 311 (426)
+.... +....+..++... ....|+|||||+.+... +...|+..|+.++-
T Consensus 84 sGp~l-----eK~gDlaaiLt~L-------e~~DVLFIDEIHrl~~~---------------vEE~LYpaMEDf~lDI~I 136 (332)
T COG2255 84 SGPAL-----EKPGDLAAILTNL-------EEGDVLFIDEIHRLSPA---------------VEEVLYPAMEDFRLDIII 136 (332)
T ss_pred ccccc-----cChhhHHHHHhcC-------CcCCeEEEehhhhcChh---------------HHHHhhhhhhheeEEEEE
Confidence 22221 2223333333332 34579999999999763 33445566664421
Q ss_pred ------------CCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHHH
Q 014376 312 ------------SPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQEL 360 (426)
Q Consensus 312 ------------~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~l 360 (426)
-+.+.+|++|.+...+...+++||++...+..++.++..+|+++....+
T Consensus 137 G~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l 197 (332)
T COG2255 137 GKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKIL 197 (332)
T ss_pred ccCCccceEeccCCCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHh
Confidence 1567888888899999999999999999999999999999999877554
No 48
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.62 E-value=1.6e-14 Score=142.08 Aligned_cols=157 Identities=20% Similarity=0.268 Sum_probs=107.9
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEec
Q 014376 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (426)
Q Consensus 157 ~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (426)
.|++++|++++++.|..++....... + ...+++|+||||+|||+||+++|+.++..+ ..+.+
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~--~-------~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~---------~~~~~ 63 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQ--E-------ALDHLLLYGPPGLGKTTLAHIIANEMGVNL---------KITSG 63 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcC--C-------CCCeEEEECCCCCCHHHHHHHHHHHhCCCE---------EEecc
Confidence 58999999999999988875432211 1 124699999999999999999999986443 22322
Q ss_pred cccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc------
Q 014376 237 HSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK------ 310 (426)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~------ 310 (426)
..... ...+...+.. ...+.+++|||++.+.... .+.|+..++...
T Consensus 64 ~~~~~------~~~l~~~l~~-------~~~~~vl~iDEi~~l~~~~---------------~e~l~~~~~~~~~~~v~~ 115 (305)
T TIGR00635 64 PALEK------PGDLAAILTN-------LEEGDVLFIDEIHRLSPAV---------------EELLYPAMEDFRLDIVIG 115 (305)
T ss_pred chhcC------chhHHHHHHh-------cccCCEEEEehHhhhCHHH---------------HHHhhHHHhhhheeeeec
Confidence 21110 1111111111 1356799999999886533 223444433222
Q ss_pred ----------CCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 311 ----------SSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 311 ----------~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
..+.++++++||.+..+++++++||+..+.+++++.++..++++...+.
T Consensus 116 ~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~ 174 (305)
T TIGR00635 116 KGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGL 174 (305)
T ss_pred cCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHH
Confidence 1134778888888899999999999999999999999999999987764
No 49
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1.1e-14 Score=151.55 Aligned_cols=172 Identities=24% Similarity=0.363 Sum_probs=122.5
Q ss_pred hhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccc
Q 014376 160 SLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (426)
Q Consensus 160 ~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (426)
+=.|.+++|+++++|+.-..+..... |.+++|+||||+|||+|++.||+.++..| +.+.-..+
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~k--------GpILcLVGPPGVGKTSLgkSIA~al~Rkf---------vR~sLGGv 386 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLK--------GPILCLVGPPGVGKTSLGKSIAKALGRKF---------VRISLGGV 386 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCC--------CcEEEEECCCCCCchhHHHHHHHHhCCCE---------EEEecCcc
Confidence 44566889999999987655443322 57899999999999999999999998877 55554333
Q ss_pred c---------cccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhh--
Q 014376 240 F---------SKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK-- 308 (426)
Q Consensus 240 ~---------~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~-- 308 (426)
. ..|+|.....+-+-..++.. .+ .+++|||||++..... |.| ..+||..||-
T Consensus 387 rDEAEIRGHRRTYIGamPGrIiQ~mkka~~-----~N-Pv~LLDEIDKm~ss~r-----GDP------aSALLEVLDPEQ 449 (782)
T COG0466 387 RDEAEIRGHRRTYIGAMPGKIIQGMKKAGV-----KN-PVFLLDEIDKMGSSFR-----GDP------ASALLEVLDPEQ 449 (782)
T ss_pred ccHHHhccccccccccCChHHHHHHHHhCC-----cC-CeEEeechhhccCCCC-----CCh------HHHHHhhcCHhh
Confidence 2 23556554444444444443 24 4899999999976432 222 2456666662
Q ss_pred ---hcC--------CCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHH-HHHHHhCcc
Q 014376 309 ---LKS--------SPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCL-QELIRTGII 366 (426)
Q Consensus 309 ---l~~--------~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l-~~l~~~~~i 366 (426)
|.. -.+++||+|+|..+.++.++++|. .+|.+..++.++..+|.+.++ .+....+.+
T Consensus 450 N~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL 518 (782)
T COG0466 450 NNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHLIPKQLKEHGL 518 (782)
T ss_pred cCchhhccccCccchhheEEEeecCccccCChHHhcce-eeeeecCCChHHHHHHHHHhcchHHHHHcCC
Confidence 111 157999999999999999999999 789999999999999999876 333333333
No 50
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=2.4e-14 Score=148.23 Aligned_cols=184 Identities=21% Similarity=0.251 Sum_probs=140.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEE
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLI 273 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illI 273 (426)
+..+||+||+|+|||.|+++++.++..+. .+.+..++|+.+..+.+....+.+..+|..+.. ..|+|+++
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~-----~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~-----~~PSiIvL 500 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDL-----IAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALW-----YAPSIIVL 500 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhcccc-----ceEEEEEechhccchhHHHHHHHHHHHHHHHHh-----hCCcEEEE
Confidence 46799999999999999999999997554 577888999998776666667778888888776 49999999
Q ss_pred echhhHHHHhhhhccCCCCChhHHHHHHHHHHhh-hh-cCCCcEEEEEEeCCCCcCCHHHh--cccCeEEEeCCCCHHHH
Q 014376 274 DEVESLAAARKAALSGSEPSDSIRVVNALLTQMD-KL-KSSPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQAR 349 (426)
Q Consensus 274 DEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld-~l-~~~~~viVi~TtN~~~~ld~al~--~R~~~~i~i~~p~~~~r 349 (426)
|++|.++... .-.+++.......++.+++++- .+ +.+..+.||+|.+..+.+.+.+. .+|+.++.++.|+..+|
T Consensus 501 Ddld~l~~~s--~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R 578 (952)
T KOG0735|consen 501 DDLDCLASAS--SNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRR 578 (952)
T ss_pred cchhhhhccC--cccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHH
Confidence 9999998822 1112233333445555554433 22 34455799999999999988887 58999999999999999
Q ss_pred HHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhccCchHHHHhhh
Q 014376 350 YEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADR 397 (426)
Q Consensus 350 ~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~s~~di~~~~~ 397 (426)
.+||+..+++... ....-++.-++..++||.+.|+...+.
T Consensus 579 ~~IL~~~~s~~~~--------~~~~~dLd~ls~~TEGy~~~DL~ifVe 618 (952)
T KOG0735|consen 579 KEILTTIFSKNLS--------DITMDDLDFLSVKTEGYLATDLVIFVE 618 (952)
T ss_pred HHHHHHHHHhhhh--------hhhhHHHHHHHHhcCCccchhHHHHHH
Confidence 9999999987652 122234555999999999999987743
No 51
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.60 E-value=1.2e-14 Score=142.68 Aligned_cols=152 Identities=20% Similarity=0.340 Sum_probs=110.6
Q ss_pred hhhhhhchhhHH---HHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEE
Q 014376 157 MWESLIYESGLK---QRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVE 233 (426)
Q Consensus 157 ~~~~lv~~~~~k---~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~ 233 (426)
.+++++|++.+. +-|.+.+.. ..+ ..++|||||||||||||+.||+..+..| ..
T Consensus 22 ~lde~vGQ~HLlg~~~~lrr~v~~------~~l--------~SmIl~GPPG~GKTTlA~liA~~~~~~f---------~~ 78 (436)
T COG2256 22 SLDEVVGQEHLLGEGKPLRRAVEA------GHL--------HSMILWGPPGTGKTTLARLIAGTTNAAF---------EA 78 (436)
T ss_pred CHHHhcChHhhhCCCchHHHHHhc------CCC--------ceeEEECCCCCCHHHHHHHHHHhhCCce---------EE
Confidence 467788887653 223333321 122 2499999999999999999999997665 77
Q ss_pred EeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCC
Q 014376 234 VNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSP 313 (426)
Q Consensus 234 i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~ 313 (426)
+++.. ..-+.++.++++++..... .+..|||||||+++....| ..||-.++ .+
T Consensus 79 ~sAv~-------~gvkdlr~i~e~a~~~~~~-gr~tiLflDEIHRfnK~QQ---------------D~lLp~vE----~G 131 (436)
T COG2256 79 LSAVT-------SGVKDLREIIEEARKNRLL-GRRTILFLDEIHRFNKAQQ---------------DALLPHVE----NG 131 (436)
T ss_pred ecccc-------ccHHHHHHHHHHHHHHHhc-CCceEEEEehhhhcChhhh---------------hhhhhhhc----CC
Confidence 77633 3467889999999776443 5578999999999977543 34565543 36
Q ss_pred cEEEEEEe--CCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 314 NVIILTTS--NITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 314 ~viVi~Tt--N~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
.+++|++| |+...+.+|+++|+ .++.+.+.+.++..+++++.+..
T Consensus 132 ~iilIGATTENPsF~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~ 178 (436)
T COG2256 132 TIILIGATTENPSFELNPALLSRA-RVFELKPLSSEDIKKLLKRALLD 178 (436)
T ss_pred eEEEEeccCCCCCeeecHHHhhhh-heeeeecCCHHHHHHHHHHHHhh
Confidence 66666544 44456899999998 78899999999999999885544
No 52
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.60 E-value=2.6e-14 Score=142.15 Aligned_cols=157 Identities=20% Similarity=0.287 Sum_probs=109.8
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEec
Q 014376 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (426)
Q Consensus 157 ~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (426)
.|++++|+++.++.+..++..... .+-. ..+++|+||||+|||++|+++|+.++..+ ..+++
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~---~~~~------~~~~ll~GppG~GKT~la~~ia~~l~~~~---------~~~~~ 84 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKK---RGEA------LDHVLLYGPPGLGKTTLANIIANEMGVNI---------RITSG 84 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHh---cCCC------CCcEEEECCCCccHHHHHHHHHHHhCCCe---------EEEec
Confidence 588999999999999887754321 1211 35699999999999999999999997543 33333
Q ss_pred cccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc------
Q 014376 237 HSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK------ 310 (426)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~------ 310 (426)
..+. ....+..++.. ...+.+++|||++.+.... .+.++..++...
T Consensus 85 ~~~~------~~~~l~~~l~~-------l~~~~vl~IDEi~~l~~~~---------------~e~l~~~~e~~~~~~~l~ 136 (328)
T PRK00080 85 PALE------KPGDLAAILTN-------LEEGDVLFIDEIHRLSPVV---------------EEILYPAMEDFRLDIMIG 136 (328)
T ss_pred cccc------ChHHHHHHHHh-------cccCCEEEEecHhhcchHH---------------HHHHHHHHHhcceeeeec
Confidence 3221 11122222222 2356899999999886432 122333333221
Q ss_pred ----------CCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 311 ----------SSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 311 ----------~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
.-+.+.+|++||....+++++++||+..+.+++|+.+++.+|++.....
T Consensus 137 ~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~ 195 (328)
T PRK00080 137 KGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARI 195 (328)
T ss_pred cCccccceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH
Confidence 1134678888888899999999999999999999999999999987765
No 53
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.59 E-value=3.6e-14 Score=144.25 Aligned_cols=196 Identities=23% Similarity=0.241 Sum_probs=127.6
Q ss_pred ccccccchhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCC--ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCC
Q 014376 149 LPAKEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNP--FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRY 226 (426)
Q Consensus 149 lp~~~~~~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~--~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~ 226 (426)
.|..-...+-+.++|++.+|+.|...+..+......+... .......++||+||||||||++|+++|..++.+|
T Consensus 61 ~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf---- 136 (412)
T PRK05342 61 TPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPF---- 136 (412)
T ss_pred CHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc----
Confidence 4444444555568999999999987765543332221110 0111246799999999999999999999997766
Q ss_pred CcceEEEEeccccc-cccccchH-HHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHH
Q 014376 227 PQCQLVEVNAHSLF-SKWFSESG-KLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLT 304 (426)
Q Consensus 227 ~~~~~i~i~~~~l~-~~~~~e~~-~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~ 304 (426)
+.+++..+. ..|.++.. ..+..+++.+...+. ...+++|||||||.+..+.. ..+.+.......++++||+
T Consensus 137 -----~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~-~a~~gIi~iDEIdkl~~~~~-~~~~~~d~s~~~vQ~~LL~ 209 (412)
T PRK05342 137 -----AIADATTLTEAGYVGEDVENILLKLLQAADYDVE-KAQRGIVYIDEIDKIARKSE-NPSITRDVSGEGVQQALLK 209 (412)
T ss_pred -----eecchhhcccCCcccchHHHHHHHHHHhccccHH-HcCCcEEEEechhhhccccC-CCCcCCCcccHHHHHHHHH
Confidence 777777665 34565532 333444433221111 24678999999999987531 1122222223468899999
Q ss_pred Hhhhh-----------cCCCcEEEEEEeCCCC------------------------------------------------
Q 014376 305 QMDKL-----------KSSPNVIILTTSNITA------------------------------------------------ 325 (426)
Q Consensus 305 ~ld~l-----------~~~~~viVi~TtN~~~------------------------------------------------ 325 (426)
.|++- ....++++|.|+|...
T Consensus 210 ~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~d 289 (412)
T PRK05342 210 ILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPED 289 (412)
T ss_pred HHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHH
Confidence 99842 1123467777777610
Q ss_pred ----cCCHHHhcccCeEEEeCCCCHHHHHHHHHH
Q 014376 326 ----AIDIAFVDRADIKAYVGPPTLQARYEILRS 355 (426)
Q Consensus 326 ----~ld~al~~R~~~~i~i~~p~~~~r~~Il~~ 355 (426)
-+.|.|+.|++.++.|.+++.+...+|+..
T Consensus 290 L~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~ 323 (412)
T PRK05342 290 LIKFGLIPEFIGRLPVVATLEELDEEALVRILTE 323 (412)
T ss_pred HHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHH
Confidence 035778899999999999999999999984
No 54
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=4.4e-14 Score=149.81 Aligned_cols=166 Identities=20% Similarity=0.271 Sum_probs=116.9
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccC------CC---
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSS------RY--- 226 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~------~~--- 226 (426)
..|++++|++.+++.|.+++.. ..+ ...+||+||+|+||||+++.+|+.++..... .+
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~------gRL-------~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sC 79 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDG------GRL-------HHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRAC 79 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhc------CCC-------CeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHH
Confidence 4699999999999999887642 111 2458999999999999999999999653210 00
Q ss_pred ------CcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHH
Q 014376 227 ------PQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVN 300 (426)
Q Consensus 227 ------~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~ 300 (426)
....+++++..+- .....++.+.+.+... .......|++|||+|.|.. ...|
T Consensus 80 r~I~~G~h~DviEIDAas~------rgVDdIReLIe~a~~~-P~~gr~KVIIIDEah~LT~---------------~A~N 137 (830)
T PRK07003 80 REIDEGRFVDYVEMDAASN------RGVDEMAALLERAVYA-PVDARFKVYMIDEVHMLTN---------------HAFN 137 (830)
T ss_pred HHHhcCCCceEEEeccccc------ccHHHHHHHHHHHHhc-cccCCceEEEEeChhhCCH---------------HHHH
Confidence 0113455544321 1122344444433211 1123568999999999865 4578
Q ss_pred HHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 301 ALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 301 ~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
.||+.|++ ...+++||.+||.+..|...+++|| ..+.|..++.++..++|+..+++
T Consensus 138 ALLKtLEE--PP~~v~FILaTtd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~ 193 (830)
T PRK07003 138 AMLKTLEE--PPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGE 193 (830)
T ss_pred HHHHHHHh--cCCCeEEEEEECChhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHH
Confidence 89998876 3457788888888889989999999 78999999999998888887765
No 55
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=7.7e-15 Score=152.02 Aligned_cols=175 Identities=23% Similarity=0.366 Sum_probs=119.8
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCc--ceEEEEe
Q 014376 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQ--CQLVEVN 235 (426)
Q Consensus 158 ~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~--~~~i~i~ 235 (426)
-++=.|.+++|+++++|+.-..+....+ |.+++|+||||+|||+++|.||+.++..|.+..-+ +.+.+|.
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~q--------GkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIk 481 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQ--------GKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIK 481 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCC--------CcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhc
Confidence 3456677899999999987554433222 78999999999999999999999999887432111 1122222
Q ss_pred ccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhh------
Q 014376 236 AHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL------ 309 (426)
Q Consensus 236 ~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l------ 309 (426)
+|. ..|+|.....+-+-..+... .+ .+++|||||++.... .|.| ..+||..||--
T Consensus 482 GHR--RTYVGAMPGkiIq~LK~v~t-----~N-PliLiDEvDKlG~g~-----qGDP------asALLElLDPEQNanFl 542 (906)
T KOG2004|consen 482 GHR--RTYVGAMPGKIIQCLKKVKT-----EN-PLILIDEVDKLGSGH-----QGDP------ASALLELLDPEQNANFL 542 (906)
T ss_pred ccc--eeeeccCChHHHHHHHhhCC-----CC-ceEEeehhhhhCCCC-----CCCh------HHHHHHhcChhhccchh
Confidence 222 23555544333333333332 24 489999999997422 1222 23455555421
Q ss_pred -------cCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHHH
Q 014376 310 -------KSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQEL 360 (426)
Q Consensus 310 -------~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~l 360 (426)
..-.++++|||.|..+.|++++++|. .+|.++-+..++..+|.+.++-..
T Consensus 543 DHYLdVp~DLSkVLFicTAN~idtIP~pLlDRM-EvIelsGYv~eEKv~IA~~yLip~ 599 (906)
T KOG2004|consen 543 DHYLDVPVDLSKVLFICTANVIDTIPPPLLDRM-EVIELSGYVAEEKVKIAERYLIPQ 599 (906)
T ss_pred hhccccccchhheEEEEeccccccCChhhhhhh-heeeccCccHHHHHHHHHHhhhhH
Confidence 12257999999999999999999998 789999999999999999888543
No 56
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.58 E-value=2.4e-14 Score=156.44 Aligned_cols=178 Identities=21% Similarity=0.329 Sum_probs=128.8
Q ss_pred cchhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccc-cCCCCcceEE
Q 014376 154 FDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRF-SSRYPQCQLV 232 (426)
Q Consensus 154 ~~~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~-~~~~~~~~~i 232 (426)
-.+.++.++|.++...++.+.+.. .. ..+++|+||||||||++++++|+.+...- ...+.+..++
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~~------~~--------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~ 242 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLCR------RK--------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIY 242 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHhc------CC--------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEE
Confidence 446678899998877776655432 11 23589999999999999999999883211 1112356778
Q ss_pred EEeccccc--cccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc
Q 014376 233 EVNAHSLF--SKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK 310 (426)
Q Consensus 233 ~i~~~~l~--~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~ 310 (426)
.++...+. .+|.++.+..+..+|+.+.. ..++||||||++.+...... ++ .+....+.|...+.
T Consensus 243 ~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~-----~~~~ILfiDEih~l~~~g~~--~~----~~~~~~~~L~~~l~--- 308 (731)
T TIGR02639 243 SLDMGSLLAGTKYRGDFEERLKAVVSEIEK-----EPNAILFIDEIHTIVGAGAT--SG----GSMDASNLLKPALS--- 308 (731)
T ss_pred EecHHHHhhhccccchHHHHHHHHHHHHhc-----cCCeEEEEecHHHHhccCCC--CC----ccHHHHHHHHHHHh---
Confidence 88887776 47788888999999988765 35789999999999864311 11 11233444444443
Q ss_pred CCCcEEEEEEeCCCC-----cCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHHHH
Q 014376 311 SSPNVIILTTSNITA-----AIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELI 361 (426)
Q Consensus 311 ~~~~viVi~TtN~~~-----~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~l~ 361 (426)
.+.+.+|++||..+ ..|+++.+||. .++++.|+.+++.+|++.......
T Consensus 309 -~g~i~~IgaTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e 362 (731)
T TIGR02639 309 -SGKLRCIGSTTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYE 362 (731)
T ss_pred -CCCeEEEEecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHH
Confidence 47788888888643 36999999996 799999999999999998776643
No 57
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=8.2e-14 Score=142.56 Aligned_cols=166 Identities=17% Similarity=0.243 Sum_probs=115.5
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhccccc------CCCC--
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS------SRYP-- 227 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~------~~~~-- 227 (426)
..|++++|++.+.+.|...+... .+ +..+||+||+||||||+|+.+|+.++.... ..+.
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~~------ri-------~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC 81 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKSG------KI-------GHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSC 81 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHcC------CC-------CeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHH
Confidence 46899999999999888776531 11 245899999999999999999999975321 0011
Q ss_pred -------cceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHH
Q 014376 228 -------QCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVN 300 (426)
Q Consensus 228 -------~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~ 300 (426)
...++++++.+- .....++.+...+.... ......|++|||+|.+.. ..++
T Consensus 82 ~~i~~g~~~dviEIdaas~------~gVd~IReL~e~l~~~p-~~g~~KV~IIDEah~Ls~---------------~A~N 139 (484)
T PRK14956 82 LEITKGISSDVLEIDAASN------RGIENIRELRDNVKFAP-MGGKYKVYIIDEVHMLTD---------------QSFN 139 (484)
T ss_pred HHHHccCCccceeechhhc------ccHHHHHHHHHHHHhhh-hcCCCEEEEEechhhcCH---------------HHHH
Confidence 112344443211 11233444444443211 224567999999999865 4678
Q ss_pred HHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 301 ALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 301 ~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
+||..|+. ...++++|.+|+.+..+.+++++|+ ..+.|..++.++..+.++..+..
T Consensus 140 ALLKtLEE--Pp~~viFILaTte~~kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~ 195 (484)
T PRK14956 140 ALLKTLEE--PPAHIVFILATTEFHKIPETILSRC-QDFIFKKVPLSVLQDYSEKLCKI 195 (484)
T ss_pred HHHHHhhc--CCCceEEEeecCChhhccHHHHhhh-heeeecCCCHHHHHHHHHHHHHH
Confidence 89998875 4567888878888899999999999 57889999888887777776654
No 58
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.56 E-value=1.1e-14 Score=148.93 Aligned_cols=142 Identities=20% Similarity=0.371 Sum_probs=98.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEe
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLID 274 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illID 274 (426)
..++||||+|+|||+|++++++.+... .++..++++++.++...+........ .......+ ....+|+||
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~----~~~~~v~yi~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~dlLiiD 206 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILEN----NPNAKVVYVSSEKFTNDFVNALRNNK---MEEFKEKY---RSVDLLLID 206 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHh----CCCCcEEEEEHHHHHHHHHHHHHcCC---HHHHHHHH---HhCCEEEEe
Confidence 348999999999999999999988432 34566788888776543322111100 11111111 234699999
Q ss_pred chhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCc---CCHHHhcccC--eEEEeCCCCHHHH
Q 014376 275 EVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAA---IDIAFVDRAD--IKAYVGPPTLQAR 349 (426)
Q Consensus 275 Eid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~---ld~al~~R~~--~~i~i~~p~~~~r 349 (426)
|++.+..+. .....++..++.+...+..+|+++...+.. +++.+.+||. ..+.+++|+.++|
T Consensus 207 Di~~l~~~~-------------~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r 273 (405)
T TIGR00362 207 DIQFLAGKE-------------RTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETR 273 (405)
T ss_pred hhhhhcCCH-------------HHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHH
Confidence 999875422 234567777777766666777777666655 4688899995 5799999999999
Q ss_pred HHHHHHHHHH
Q 014376 350 YEILRSCLQE 359 (426)
Q Consensus 350 ~~Il~~~l~~ 359 (426)
.+|++..++.
T Consensus 274 ~~il~~~~~~ 283 (405)
T TIGR00362 274 LAILQKKAEE 283 (405)
T ss_pred HHHHHHHHHH
Confidence 9999998876
No 59
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.55 E-value=1e-13 Score=151.43 Aligned_cols=164 Identities=22% Similarity=0.310 Sum_probs=113.5
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccc
Q 014376 159 ESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (426)
Q Consensus 159 ~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (426)
++..|.+++|+++++|+......... .+..++|+||||+|||++++.+|+.++.++ +.++...
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~--------~g~~i~l~GppG~GKTtl~~~ia~~l~~~~---------~~i~~~~ 384 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKI--------KGPILCLVGPPGVGKTSLGQSIAKATGRKY---------VRMALGG 384 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccC--------CCceEEEECCCCCCHHHHHHHHHHHhCCCE---------EEEEcCC
Confidence 45889999999999998744332211 256799999999999999999999998665 4444333
Q ss_pred cc---------cccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhh-
Q 014376 239 LF---------SKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK- 308 (426)
Q Consensus 239 l~---------~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~- 308 (426)
.. ..|.+.....+.+.+..+. ....|++|||+|++....+ + ....+|+..+|.
T Consensus 385 ~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~------~~~~villDEidk~~~~~~-----g------~~~~aLlevld~~ 447 (784)
T PRK10787 385 VRDEAEIRGHRRTYIGSMPGKLIQKMAKVG------VKNPLFLLDEIDKMSSDMR-----G------DPASALLEVLDPE 447 (784)
T ss_pred CCCHHHhccchhccCCCCCcHHHHHHHhcC------CCCCEEEEEChhhcccccC-----C------CHHHHHHHHhccc
Confidence 21 1233333222222222221 1234899999999865321 1 134567777663
Q ss_pred ----hc--------CCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHH
Q 014376 309 ----LK--------SSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQ 358 (426)
Q Consensus 309 ----l~--------~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~ 358 (426)
+. .-+++++|+|+|.. .++++|++|+ .++.+..++.++..+|.+.++.
T Consensus 448 ~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 448 QNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred cEEEEecccccccccCCceEEEEcCCCC-CCCHHHhcce-eeeecCCCCHHHHHHHHHHhhh
Confidence 11 22789999999987 5999999999 5788999999999999999985
No 60
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.55 E-value=1.8e-13 Score=137.11 Aligned_cols=190 Identities=16% Similarity=0.222 Sum_probs=128.6
Q ss_pred cccccchhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCC--ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCC
Q 014376 150 PAKEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNP--FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYP 227 (426)
Q Consensus 150 p~~~~~~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~--~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~ 227 (426)
|..-...+-+.++|+++.|+.+...+....... ++++ ..-..+++++|+||||||||++++++|+.++.++
T Consensus 3 P~~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~--~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f----- 75 (441)
T TIGR00390 3 PREIVAELDKYIIGQDNAKKSVAIALRNRYRRS--QLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF----- 75 (441)
T ss_pred HHHHHHHHhhhccCHHHHHHHHHHHHHhhhhhh--ccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE-----
Confidence 444445566779999999999987776542222 1111 0111247899999999999999999999998766
Q ss_pred cceEEEEecccccc-cccc-chHHHHHHHHHHHHHH--------------------------------------------
Q 014376 228 QCQLVEVNAHSLFS-KWFS-ESGKLVAKLFQKIQEM-------------------------------------------- 261 (426)
Q Consensus 228 ~~~~i~i~~~~l~~-~~~~-e~~~~v~~~f~~~~~~-------------------------------------------- 261 (426)
+.+++..+.. .|.+ +.+..++.+|..+..+
T Consensus 76 ----i~vdat~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~ 151 (441)
T TIGR00390 76 ----IKVEATKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPES 151 (441)
T ss_pred ----EEeecceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHH
Confidence 6677666552 5555 3444455554443100
Q ss_pred --------------------------------------------------------------------------------
Q 014376 262 -------------------------------------------------------------------------------- 261 (426)
Q Consensus 262 -------------------------------------------------------------------------------- 261 (426)
T Consensus 152 ~r~~~~~~l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~l 231 (441)
T TIGR00390 152 AREAFRKKLREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKL 231 (441)
T ss_pred HHHHHHHHHhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhc
Confidence
Q ss_pred ----------HHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhh--------cCCCcEEEEEEeC-
Q 014376 262 ----------VEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL--------KSSPNVIILTTSN- 322 (426)
Q Consensus 262 ----------~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l--------~~~~~viVi~TtN- 322 (426)
++.....+||||||||+++.+.. +++-.-....+++.||..+++- -...++++|++.-
T Consensus 232 id~~~v~~~a~~~~e~~GIVfiDEiDKIa~~~~---~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF 308 (441)
T TIGR00390 232 VDPEEIKQEAIDAVEQSGIIFIDEIDKIAKKGE---SSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAF 308 (441)
T ss_pred cChHHHHHHHHHHHHcCCEEEEEchhhhcccCC---CCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCc
Confidence 00123567999999999997542 2222233456888899988863 2235677777643
Q ss_pred ---CCCcCCHHHhcccCeEEEeCCCCHHHHHHHH
Q 014376 323 ---ITAAIDIAFVDRADIKAYVGPPTLQARYEIL 353 (426)
Q Consensus 323 ---~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il 353 (426)
.+..+=|.|.+||..++.+.+++.++...||
T Consensus 309 ~~~kp~DlIPEl~GR~Pi~v~L~~L~~edL~rIL 342 (441)
T TIGR00390 309 QLAKPSDLIPELQGRFPIRVELQALTTDDFERIL 342 (441)
T ss_pred CCCChhhccHHHhCccceEEECCCCCHHHHHHHh
Confidence 3455678899999999999999999999998
No 61
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.55 E-value=1.3e-13 Score=139.50 Aligned_cols=170 Identities=21% Similarity=0.296 Sum_probs=112.9
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhccccc-----C------
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS-----S------ 224 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~-----~------ 224 (426)
..|++++|++.+++.|.+.+..... ++..+....+..+||+||+|+|||++|+++|+.+..... +
T Consensus 2 ~~f~~IiGq~~~~~~L~~~i~~~~~----~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~ 77 (394)
T PRK07940 2 SVWDDLVGQEAVVAELRAAARAARA----DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACR 77 (394)
T ss_pred ChhhhccChHHHHHHHHHHHHhccc----cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHH
Confidence 3699999999999999988765321 111111222567999999999999999999998854321 1
Q ss_pred -----CCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHH
Q 014376 225 -----RYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVV 299 (426)
Q Consensus 225 -----~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~ 299 (426)
.+|+..++..++. ......++.+++.+.... ......|++|||+|.+.. ...
T Consensus 78 ~~~~~~hpD~~~i~~~~~-------~i~i~~iR~l~~~~~~~p-~~~~~kViiIDead~m~~---------------~aa 134 (394)
T PRK07940 78 TVLAGTHPDVRVVAPEGL-------SIGVDEVRELVTIAARRP-STGRWRIVVIEDADRLTE---------------RAA 134 (394)
T ss_pred HHhcCCCCCEEEeccccc-------cCCHHHHHHHHHHHHhCc-ccCCcEEEEEechhhcCH---------------HHH
Confidence 1122112211111 112234666666554321 123557999999999965 345
Q ss_pred HHHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHH
Q 014376 300 NALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRS 355 (426)
Q Consensus 300 ~~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~ 355 (426)
|.|++.|+.. .+++++|.+++.++.+.+++++|+ ..++|++|+.++..+++..
T Consensus 135 naLLk~LEep--~~~~~fIL~a~~~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~~ 187 (394)
T PRK07940 135 NALLKAVEEP--PPRTVWLLCAPSPEDVLPTIRSRC-RHVALRTPSVEAVAEVLVR 187 (394)
T ss_pred HHHHHHhhcC--CCCCeEEEEECChHHChHHHHhhC-eEEECCCCCHHHHHHHHHH
Confidence 8899988763 334444444455888999999999 7999999999988877763
No 62
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=4.3e-14 Score=148.12 Aligned_cols=166 Identities=20% Similarity=0.292 Sum_probs=117.9
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccc-----------cC
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRF-----------SS 224 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~-----------~~ 224 (426)
..|++++|++.+++.|.+++... .+ ...+||+||+|+||||+++.+|+.++..- ++
T Consensus 13 qtFddVIGQe~vv~~L~~al~~g------RL-------pHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG 79 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQ------RL-------HHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCG 79 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhC------CC-------ceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCc
Confidence 46899999999999999887532 11 24689999999999999999999997521 11
Q ss_pred CCCcc---------eEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChh
Q 014376 225 RYPQC---------QLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDS 295 (426)
Q Consensus 225 ~~~~~---------~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~ 295 (426)
.+..| .++++++.+- .....++.+.+.+... .......|++|||+|.|..
T Consensus 80 ~C~sC~~I~aG~hpDviEIdAas~------~gVDdIReLie~~~~~-P~~gr~KViIIDEah~Ls~-------------- 138 (700)
T PRK12323 80 QCRACTEIDAGRFVDYIEMDAASN------RGVDEMAQLLDKAVYA-PTAGRFKVYMIDEVHMLTN-------------- 138 (700)
T ss_pred ccHHHHHHHcCCCCcceEeccccc------CCHHHHHHHHHHHHhc-hhcCCceEEEEEChHhcCH--------------
Confidence 11111 3455554321 1123344444443321 1234568999999999865
Q ss_pred HHHHHHHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 296 IRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 296 ~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
...|.||+.|+. ..++++||.+||.+..+.+.+++|| ..+.|..++.++..+.++..+.+
T Consensus 139 -~AaNALLKTLEE--PP~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~ 198 (700)
T PRK12323 139 -HAFNAMLKTLEE--PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGE 198 (700)
T ss_pred -HHHHHHHHhhcc--CCCCceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHH
Confidence 467899998876 4466777777888888999999999 78999999999888888876654
No 63
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.54 E-value=2.1e-14 Score=148.70 Aligned_cols=142 Identities=21% Similarity=0.367 Sum_probs=101.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEe
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLID 274 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illID 274 (426)
..++||||+|+|||+|++++++.+... .++..++++++.++...+..........-| ... .....+|+||
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~----~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~dlLiiD 218 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEK----NPNAKVVYVTSEKFTNDFVNALRNNTMEEF---KEK---YRSVDVLLID 218 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHh----CCCCeEEEEEHHHHHHHHHHHHHcCcHHHH---HHH---HhcCCEEEEe
Confidence 349999999999999999999998532 345677889988775543322211111111 111 1245799999
Q ss_pred chhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCc---CCHHHhcccC--eEEEeCCCCHHHH
Q 014376 275 EVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAA---IDIAFVDRAD--IKAYVGPPTLQAR 349 (426)
Q Consensus 275 Eid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~---ld~al~~R~~--~~i~i~~p~~~~r 349 (426)
|++.+..+. .....++..++.+...+..+|+++...+.. +++.+.+||. ..+.+++|+.++|
T Consensus 219 Di~~l~~~~-------------~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r 285 (450)
T PRK00149 219 DIQFLAGKE-------------RTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETR 285 (450)
T ss_pred hhhhhcCCH-------------HHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHH
Confidence 999885432 234567777777766666777777666655 5788999994 6899999999999
Q ss_pred HHHHHHHHHH
Q 014376 350 YEILRSCLQE 359 (426)
Q Consensus 350 ~~Il~~~l~~ 359 (426)
.+|++..++.
T Consensus 286 ~~il~~~~~~ 295 (450)
T PRK00149 286 IAILKKKAEE 295 (450)
T ss_pred HHHHHHHHHH
Confidence 9999998875
No 64
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.54 E-value=1.5e-13 Score=139.16 Aligned_cols=201 Identities=23% Similarity=0.209 Sum_probs=129.7
Q ss_pred ccccccccchhhhhhhchhhHHHHHHHHHHHHHHHhhc---CCCCccc-cCCcEEEEEcCCCCcHHHHHHHHHHHhcccc
Q 014376 147 WILPAKEFDGMWESLIYESGLKQRLLHYAASALMFAEK---GVNPFLV-SWNRIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (426)
Q Consensus 147 ~~lp~~~~~~~~~~lv~~~~~k~~L~~~~~~~~~~~~~---g~~~~~i-~~~~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (426)
+..|..-...+-+.++|++++|+.+...+..+...... ...+..+ ..+.++||+||||||||++|+++|+.++.++
T Consensus 65 ~~~p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf 144 (413)
T TIGR00382 65 LPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPF 144 (413)
T ss_pred CCCHHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCe
Confidence 33455555556667899999999988776543332211 1100111 1246899999999999999999999997665
Q ss_pred cCCCCcceEEEEeccccc-cccccch-HHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHH
Q 014376 223 SSRYPQCQLVEVNAHSLF-SKWFSES-GKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVN 300 (426)
Q Consensus 223 ~~~~~~~~~i~i~~~~l~-~~~~~e~-~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~ 300 (426)
..+++..+. ..|+++. +..+..+++.....+ ....+++|+|||+|.+..++.. .+.+.......+++
T Consensus 145 ---------~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l-~~a~~gIV~lDEIdkl~~~~~~-~s~~~dvsg~~vq~ 213 (413)
T TIGR00382 145 ---------AIADATTLTEAGYVGEDVENILLKLLQAADYDV-EKAQKGIIYIDEIDKISRKSEN-PSITRDVSGEGVQQ 213 (413)
T ss_pred ---------EEechhhccccccccccHHHHHHHHHHhCcccH-HhcccceEEecccchhchhhcc-ccccccccchhHHH
Confidence 566666654 2466653 333444443321111 1235689999999999875421 11111122236888
Q ss_pred HHHHHhhhhc-----------CCCcEEEEEEeCCC---------------------------C-----------------
Q 014376 301 ALLTQMDKLK-----------SSPNVIILTTSNIT---------------------------A----------------- 325 (426)
Q Consensus 301 ~ll~~ld~l~-----------~~~~viVi~TtN~~---------------------------~----------------- 325 (426)
.||+.|++.. ...++++|.|+|.. .
T Consensus 214 ~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~ 293 (413)
T TIGR00382 214 ALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEP 293 (413)
T ss_pred HHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHH
Confidence 8999887432 23568899998871 0
Q ss_pred ------cCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHH
Q 014376 326 ------AIDIAFVDRADIKAYVGPPTLQARYEILRSCLQ 358 (426)
Q Consensus 326 ------~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~ 358 (426)
.+.|+|+.|++.++++.+++.+...+|+...+.
T Consensus 294 ~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n 332 (413)
T TIGR00382 294 EDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKN 332 (413)
T ss_pred HHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHH
Confidence 034778899999999999999999999887543
No 65
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.54 E-value=2.1e-13 Score=136.81 Aligned_cols=191 Identities=17% Similarity=0.214 Sum_probs=128.2
Q ss_pred cccccchhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCc--cccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCC
Q 014376 150 PAKEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPF--LVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYP 227 (426)
Q Consensus 150 p~~~~~~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~--~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~ 227 (426)
|..-...+-..++|++++|+.+...+....... ++.+. .-..++++||+||||+|||++|++||+.++.+|
T Consensus 6 p~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~--~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~f----- 78 (443)
T PRK05201 6 PREIVSELDKYIIGQDDAKRAVAIALRNRWRRM--QLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF----- 78 (443)
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHHHHHh--cCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChh-----
Confidence 444444555679999999999988776533222 22110 001247899999999999999999999998776
Q ss_pred cceEEEEecccccc-cccc-chHHHHHHHHHHHH----------------------------------------------
Q 014376 228 QCQLVEVNAHSLFS-KWFS-ESGKLVAKLFQKIQ---------------------------------------------- 259 (426)
Q Consensus 228 ~~~~i~i~~~~l~~-~~~~-e~~~~v~~~f~~~~---------------------------------------------- 259 (426)
+.+++..+.. .|.+ ..+..++.+|+.+.
T Consensus 79 ----i~vD~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~ 154 (443)
T PRK05201 79 ----IKVEATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISA 154 (443)
T ss_pred ----eeecchhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhH
Confidence 6666665553 4555 22344444444331
Q ss_pred --------------------------------------------------------------------------------
Q 014376 260 -------------------------------------------------------------------------------- 259 (426)
Q Consensus 260 -------------------------------------------------------------------------------- 259 (426)
T Consensus 155 ~r~~~~~~l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~li 234 (443)
T PRK05201 155 TRQKFRKKLREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLI 234 (443)
T ss_pred HHHHHHHHHHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhcc
Confidence
Q ss_pred -------HHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhh--------cCCCcEEEEEEeC--
Q 014376 260 -------EMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL--------KSSPNVIILTTSN-- 322 (426)
Q Consensus 260 -------~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l--------~~~~~viVi~TtN-- 322 (426)
..+......+||||||||+++..... + +-.-....++..||..+++- -...++++|++--
T Consensus 235 d~~~v~~~ai~~ae~~GIVfiDEiDKIa~~~~~--~-~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~ 311 (443)
T PRK05201 235 DMEEIKQEAIERVEQNGIVFIDEIDKIAARGGS--S-GPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFH 311 (443)
T ss_pred ChHHHHHHHHHHHHcCCEEEEEcchhhcccCCC--C-CCCCCccchhcccccccccceeeecceeEECCceeEEecCCcC
Confidence 00011125579999999999976432 2 22334456888899988862 2336778887643
Q ss_pred --CCCcCCHHHhcccCeEEEeCCCCHHHHHHHHH
Q 014376 323 --ITAAIDIAFVDRADIKAYVGPPTLQARYEILR 354 (426)
Q Consensus 323 --~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~ 354 (426)
.+..+-|.|.+||..++.+.+++.+...+||.
T Consensus 312 ~~kp~DlIPEl~GR~Pi~v~L~~L~~~dL~~ILt 345 (443)
T PRK05201 312 VSKPSDLIPELQGRFPIRVELDALTEEDFVRILT 345 (443)
T ss_pred CCChhhccHHHhCccceEEECCCCCHHHHHHHhc
Confidence 34556789999999999999999999999983
No 66
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.53 E-value=2.6e-14 Score=147.25 Aligned_cols=141 Identities=19% Similarity=0.319 Sum_probs=98.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchH-HHHHHHHHHHHHHHHhccCcEEEEEe
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESG-KLVAKLFQKIQEMVEEENNLVFVLID 274 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~-~~v~~~f~~~~~~~~~~~~~~illID 274 (426)
.++||||+|+|||+|++++++.+... .++..++++++.++...+..... ..+..+....+ ..+.+|+||
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~----~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~------~~~dvLlID 201 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQN----EPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYR------KKVDVLLID 201 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHh----CCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHH------hcCCEEEEe
Confidence 49999999999999999999987432 34567788888776544322111 11111111111 246799999
Q ss_pred chhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCcC---CHHHhccc--CeEEEeCCCCHHHH
Q 014376 275 EVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAI---DIAFVDRA--DIKAYVGPPTLQAR 349 (426)
Q Consensus 275 Eid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~l---d~al~~R~--~~~i~i~~p~~~~r 349 (426)
|++.+.... .....++..++.+...+..+|+++.+.+..+ ++.+.+|| +..+.+.+|+.+.|
T Consensus 202 Di~~l~~~~-------------~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r 268 (440)
T PRK14088 202 DVQFLIGKT-------------GVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETR 268 (440)
T ss_pred chhhhcCcH-------------HHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHH
Confidence 999875422 2345677777777776777777776666654 56788888 56889999999999
Q ss_pred HHHHHHHHHH
Q 014376 350 YEILRSCLQE 359 (426)
Q Consensus 350 ~~Il~~~l~~ 359 (426)
.+|++..++.
T Consensus 269 ~~IL~~~~~~ 278 (440)
T PRK14088 269 KKIARKMLEI 278 (440)
T ss_pred HHHHHHHHHh
Confidence 9999987764
No 67
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.52 E-value=2.8e-14 Score=146.75 Aligned_cols=139 Identities=17% Similarity=0.274 Sum_probs=95.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEec
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDE 275 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDE 275 (426)
.++||||+|+|||+|++++++.+... +..++++++..+...+.......-...|... .....+|+|||
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~------~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~------~~~~dvLiIDD 210 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRES------GGKILYVRSELFTEHLVSAIRSGEMQRFRQF------YRNVDALFIED 210 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHc------CCCEEEeeHHHHHHHHHHHHhcchHHHHHHH------cccCCEEEEcc
Confidence 49999999999999999999988421 3456777776554322211111001112211 13557999999
Q ss_pred hhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCc---CCHHHhccc--CeEEEeCCCCHHHHH
Q 014376 276 VESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAA---IDIAFVDRA--DIKAYVGPPTLQARY 350 (426)
Q Consensus 276 id~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~---ld~al~~R~--~~~i~i~~p~~~~r~ 350 (426)
++.+..+. .....++..++.+...++.+|+++++.+.. +++.+.+|| +..+.+.+|+.+++.
T Consensus 211 iq~l~~k~-------------~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~ 277 (445)
T PRK12422 211 IEVFSGKG-------------ATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLR 277 (445)
T ss_pred hhhhcCCh-------------hhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHH
Confidence 99875322 234567777776655667777777666644 578999999 588999999999999
Q ss_pred HHHHHHHHH
Q 014376 351 EILRSCLQE 359 (426)
Q Consensus 351 ~Il~~~l~~ 359 (426)
.|++..++.
T Consensus 278 ~iL~~k~~~ 286 (445)
T PRK12422 278 SFLERKAEA 286 (445)
T ss_pred HHHHHHHHH
Confidence 999988766
No 68
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.51 E-value=3.7e-13 Score=146.01 Aligned_cols=180 Identities=20% Similarity=0.317 Sum_probs=125.0
Q ss_pred ccchhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhccc-ccCCCCcceE
Q 014376 153 EFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIR-FSSRYPQCQL 231 (426)
Q Consensus 153 ~~~~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~-~~~~~~~~~~ 231 (426)
--++.++.++|.++..+++.+.+.. .. ..+++|+||||||||++++.+|+.+-.. ......++.+
T Consensus 180 a~~g~~~~liGR~~ei~~~i~iL~r-----~~---------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~ 245 (758)
T PRK11034 180 ARVGGIDPLIGREKELERAIQVLCR-----RR---------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTI 245 (758)
T ss_pred HHcCCCCcCcCCCHHHHHHHHHHhc-----cC---------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeE
Confidence 3456678889988887777765443 11 2348999999999999999999876211 0011234555
Q ss_pred EEEeccccc--cccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhh
Q 014376 232 VEVNAHSLF--SKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL 309 (426)
Q Consensus 232 i~i~~~~l~--~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l 309 (426)
+.++...+. .+|.++.+..+..+|..+.. ..++||||||++.+...+.. ++ ......+.|.. +
T Consensus 246 ~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~-----~~~~ILfIDEIh~L~g~g~~--~~----g~~d~~nlLkp----~ 310 (758)
T PRK11034 246 YSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ-----DTNSILFIDEIHTIIGAGAA--SG----GQVDAANLIKP----L 310 (758)
T ss_pred EeccHHHHhcccchhhhHHHHHHHHHHHHHh-----cCCCEEEeccHHHHhccCCC--CC----cHHHHHHHHHH----H
Confidence 666555554 35667777778888877664 36789999999999864321 11 11223333332 3
Q ss_pred cCCCcEEEEEEeCCCC-----cCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHHHHH
Q 014376 310 KSSPNVIILTTSNITA-----AIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIR 362 (426)
Q Consensus 310 ~~~~~viVi~TtN~~~-----~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~l~~ 362 (426)
...+.+.+|++|+..+ ..|++|.+||. .+.++.|+.+++.+|++........
T Consensus 311 L~~g~i~vIgATt~~E~~~~~~~D~AL~rRFq-~I~v~ePs~~~~~~IL~~~~~~ye~ 367 (758)
T PRK11034 311 LSSGKIRVIGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEA 367 (758)
T ss_pred HhCCCeEEEecCChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHhhh
Confidence 3457899999999865 36999999995 7999999999999999987766654
No 69
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=5.4e-13 Score=138.10 Aligned_cols=166 Identities=17% Similarity=0.252 Sum_probs=112.2
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccC------CC---
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSS------RY--- 226 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~------~~--- 226 (426)
..|++++|++.+++.|...+... .+ +..++|+|||||||||+|+++|+.++..-.. .+
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~~------~l-------~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c 77 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKKN------SI-------SHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRAC 77 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC------CC-------CeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHH
Confidence 46899999999988888765431 11 2458999999999999999999998642100 00
Q ss_pred ------CcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHH
Q 014376 227 ------PQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVN 300 (426)
Q Consensus 227 ------~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~ 300 (426)
.+..++.+++.+- .....++.+.+.+.... ......+++|||++.+.. ..++
T Consensus 78 ~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p-~~~~~kVvIIDE~h~Lt~---------------~a~~ 135 (472)
T PRK14962 78 RSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRP-MEGKYKVYIIDEVHMLTK---------------EAFN 135 (472)
T ss_pred HHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhCh-hcCCeEEEEEEChHHhHH---------------HHHH
Confidence 0113455554321 11233444444433211 123557999999999864 3457
Q ss_pred HHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 301 ALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 301 ~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
.|+..++. ..+.+++|.+++.+..+.+++++|+ ..+.+.+++.++...+++..+..
T Consensus 136 ~LLk~LE~--p~~~vv~Ilattn~~kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~ 191 (472)
T PRK14962 136 ALLKTLEE--PPSHVVFVLATTNLEKVPPTIISRC-QVIEFRNISDELIIKRLQEVAEA 191 (472)
T ss_pred HHHHHHHh--CCCcEEEEEEeCChHhhhHHHhcCc-EEEEECCccHHHHHHHHHHHHHH
Confidence 78887775 3356666666666778999999999 58899999999988888877653
No 70
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=6.1e-13 Score=143.66 Aligned_cols=166 Identities=22% Similarity=0.285 Sum_probs=115.5
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhccccc------CCCCc-
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS------SRYPQ- 228 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~------~~~~~- 228 (426)
..|++++|++.+++.|.+++... .+ ...+||+||+||||||+||++|+.++.... ..+..
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~------rl-------~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC 79 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQ------RL-------HHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSC 79 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhC------CC-------CeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHH
Confidence 46899999999999988776421 11 245799999999999999999999975311 10100
Q ss_pred --------ceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHH
Q 014376 229 --------CQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVN 300 (426)
Q Consensus 229 --------~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~ 300 (426)
..++++++.+- .....++.+...+.... ......|++|||++.|.. ..++
T Consensus 80 ~~i~~g~~~DviEidAas~------~kVDdIReLie~v~~~P-~~gk~KViIIDEAh~LT~---------------eAqN 137 (944)
T PRK14949 80 VEIAQGRFVDLIEVDAASR------TKVDDTRELLDNVQYRP-SRGRFKVYLIDEVHMLSR---------------SSFN 137 (944)
T ss_pred HHHhcCCCceEEEeccccc------cCHHHHHHHHHHHHhhh-hcCCcEEEEEechHhcCH---------------HHHH
Confidence 11233433210 11233455544443221 224568999999999965 5678
Q ss_pred HHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 301 ALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 301 ~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
.||+.|+. ..+++++|.+|+.+..+.+.+++|+ ..+.|.+++.++..+.+++.+..
T Consensus 138 ALLKtLEE--PP~~vrFILaTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~ 193 (944)
T PRK14949 138 ALLKTLEE--PPEHVKFLLATTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQ 193 (944)
T ss_pred HHHHHHhc--cCCCeEEEEECCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHH
Confidence 99999886 3456666666777778888999998 78999999999998888877654
No 71
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.49 E-value=2e-13 Score=129.81 Aligned_cols=166 Identities=22% Similarity=0.226 Sum_probs=114.1
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEe
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVN 235 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~ 235 (426)
..+++++|++.+.+.|.+.+.. .+ ..++|||||||||||+.++++|+.+..+- .-.+++.+.|
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~------~~--------lp~~LFyGPpGTGKTStalafar~L~~~~---~~~~rvl~ln 95 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLR------RI--------LPHYLFYGPPGTGKTSTALAFARALNCEQ---LFPCRVLELN 95 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhh------cC--------CceEEeeCCCCCcHhHHHHHHHHHhcCcc---ccccchhhhc
Confidence 4688999999999999887653 12 23599999999999999999999996421 2345667777
Q ss_pred ccccccccccchHHHHHHHHHHHHHHH----Hh-ccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc
Q 014376 236 AHSLFSKWFSESGKLVAKLFQKIQEMV----EE-ENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK 310 (426)
Q Consensus 236 ~~~l~~~~~~e~~~~v~~~f~~~~~~~----~~-~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~ 310 (426)
+++..+..+... --+-|.+..... .. ...+.|++|||+|.+.. ...++|.+.|+..
T Consensus 96 aSderGisvvr~---Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts---------------daq~aLrr~mE~~- 156 (346)
T KOG0989|consen 96 ASDERGISVVRE---KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS---------------DAQAALRRTMEDF- 156 (346)
T ss_pred ccccccccchhh---hhcCHHHHhhccccccCCCCCcceEEEEechhhhhH---------------HHHHHHHHHHhcc-
Confidence 766544321111 011122222111 01 12337999999999987 4567788888873
Q ss_pred CCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 311 SSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 311 ~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
...+.++..+|....+...+.+|+ .++.|++...+.....|+....+
T Consensus 157 -s~~trFiLIcnylsrii~pi~SRC-~KfrFk~L~d~~iv~rL~~Ia~~ 203 (346)
T KOG0989|consen 157 -SRTTRFILICNYLSRIIRPLVSRC-QKFRFKKLKDEDIVDRLEKIASK 203 (346)
T ss_pred -ccceEEEEEcCChhhCChHHHhhH-HHhcCCCcchHHHHHHHHHHHHH
Confidence 456677777899999999999998 57778887776666666655443
No 72
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.49 E-value=2e-13 Score=128.07 Aligned_cols=142 Identities=23% Similarity=0.355 Sum_probs=99.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEec
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDE 275 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDE 275 (426)
.++||||+|+|||+|++++++.+... .++..++++++.++...+...... .....+........+++||+
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~----~~~~~v~y~~~~~f~~~~~~~~~~------~~~~~~~~~~~~~DlL~iDD 105 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQ----HPGKRVVYLSAEEFIREFADALRD------GEIEEFKDRLRSADLLIIDD 105 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHH----CTTS-EEEEEHHHHHHHHHHHHHT------TSHHHHHHHHCTSSEEEEET
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhc----cccccceeecHHHHHHHHHHHHHc------ccchhhhhhhhcCCEEEEec
Confidence 48999999999999999999988432 356778899887765433221111 01111111223557999999
Q ss_pred hhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCcC---CHHHhccc--CeEEEeCCCCHHHHH
Q 014376 276 VESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAI---DIAFVDRA--DIKAYVGPPTLQARY 350 (426)
Q Consensus 276 id~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~l---d~al~~R~--~~~i~i~~p~~~~r~ 350 (426)
++.+..+. .....++..++.+...++.+|+++...|..+ ++.+.+|+ +..+.+.+|+.+.|.
T Consensus 106 i~~l~~~~-------------~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~ 172 (219)
T PF00308_consen 106 IQFLAGKQ-------------RTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRR 172 (219)
T ss_dssp GGGGTTHH-------------HHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHH
T ss_pred chhhcCch-------------HHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHH
Confidence 99986532 5678899999998888888888887877764 78888997 678999999999999
Q ss_pred HHHHHHHHHH
Q 014376 351 EILRSCLQEL 360 (426)
Q Consensus 351 ~Il~~~l~~l 360 (426)
+|++....+.
T Consensus 173 ~il~~~a~~~ 182 (219)
T PF00308_consen 173 RILQKKAKER 182 (219)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 73
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.49 E-value=3.3e-13 Score=148.81 Aligned_cols=180 Identities=16% Similarity=0.218 Sum_probs=124.4
Q ss_pred cccchhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccc-cCCCCcce
Q 014376 152 KEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRF-SSRYPQCQ 230 (426)
Q Consensus 152 ~~~~~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~-~~~~~~~~ 230 (426)
.--.+.++.++|.+....++.+.+.. .. ..+++|+||||+|||++++.+|+.+.... .....+..
T Consensus 180 ~~r~~~ld~~iGr~~ei~~~i~~l~r------~~--------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~ 245 (852)
T TIGR03345 180 QAREGKIDPVLGRDDEIRQMIDILLR------RR--------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVR 245 (852)
T ss_pred HhcCCCCCcccCCHHHHHHHHHHHhc------CC--------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCe
Confidence 33457788999999876666554321 11 13489999999999999999999884321 11123456
Q ss_pred EEEEeccccc--cccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhh
Q 014376 231 LVEVNAHSLF--SKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK 308 (426)
Q Consensus 231 ~i~i~~~~l~--~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~ 308 (426)
++.++...+. .++.++....+..+++.+... ..++||||||++.+...+.. .+. ....+.|...+
T Consensus 246 i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~----~~~~ILfIDEih~l~~~g~~--~~~-----~d~~n~Lkp~l-- 312 (852)
T TIGR03345 246 LLSLDLGLLQAGASVKGEFENRLKSVIDEVKAS----PQPIILFIDEAHTLIGAGGQ--AGQ-----GDAANLLKPAL-- 312 (852)
T ss_pred EEEeehhhhhcccccchHHHHHHHHHHHHHHhc----CCCeEEEEeChHHhccCCCc--ccc-----ccHHHHhhHHh--
Confidence 6777776665 356677778888888887541 46789999999999864421 111 12223344333
Q ss_pred hcCCCcEEEEEEeCCCC-----cCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHHHH
Q 014376 309 LKSSPNVIILTTSNITA-----AIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELI 361 (426)
Q Consensus 309 l~~~~~viVi~TtN~~~-----~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~l~ 361 (426)
..+.+.+|++|+..+ .+|+||.+|| ..+.++.|+.++..+|++.....+.
T Consensus 313 --~~G~l~~IgaTT~~e~~~~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~~e 367 (852)
T TIGR03345 313 --ARGELRTIAATTWAEYKKYFEKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPVLE 367 (852)
T ss_pred --hCCCeEEEEecCHHHHhhhhhccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHhhh
Confidence 357788888888643 3699999999 4899999999999999866655443
No 74
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=1.1e-12 Score=137.96 Aligned_cols=166 Identities=20% Similarity=0.294 Sum_probs=115.5
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhccccc------CCCC--
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS------SRYP-- 227 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~------~~~~-- 227 (426)
..|++++|++.+++.|.+.+.. |-. ...+||+||+|+||||+|+++|+.++.... ..+.
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~-------grl------~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC 78 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALER-------GRL------HHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATC 78 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------CCC------CeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHH
Confidence 4689999999999999887652 211 256899999999999999999999965210 1011
Q ss_pred -------cceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHH
Q 014376 228 -------QCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVN 300 (426)
Q Consensus 228 -------~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~ 300 (426)
+..++++++.+- .....++.+...+.... ......|++|||+|.|.. ...+
T Consensus 79 ~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P-~~gk~KV~IIDEVh~LS~---------------~A~N 136 (702)
T PRK14960 79 KAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAP-TQGRFKVYLIDEVHMLST---------------HSFN 136 (702)
T ss_pred HHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhh-hcCCcEEEEEechHhcCH---------------HHHH
Confidence 113455555431 12234455544433211 124568999999998865 3568
Q ss_pred HHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 301 ALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 301 ~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
+|++.|+. ..+.+.+|.+++.+..+...+++|+ ..+.+.+++.++..+.++..+++
T Consensus 137 ALLKtLEE--PP~~v~FILaTtd~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~k 192 (702)
T PRK14960 137 ALLKTLEE--PPEHVKFLFATTDPQKLPITVISRC-LQFTLRPLAVDEITKHLGAILEK 192 (702)
T ss_pred HHHHHHhc--CCCCcEEEEEECChHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHH
Confidence 88888876 3345556666666777888899999 78899999999998888887765
No 75
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.48 E-value=8.5e-13 Score=140.17 Aligned_cols=166 Identities=19% Similarity=0.279 Sum_probs=116.7
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhccccc------CCCC--
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS------SRYP-- 227 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~------~~~~-- 227 (426)
..|++++|++.+++.|.+.+... .+ ...+||+||+|+||||+|+.+|+.++.... +.++
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~------rl-------~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C 79 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLG------RL-------HHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNC 79 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC------CC-------CeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHH
Confidence 47999999999999888776531 11 245899999999999999999999975321 0000
Q ss_pred -------cceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHH
Q 014376 228 -------QCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVN 300 (426)
Q Consensus 228 -------~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~ 300 (426)
+..++++++.+- .....++.+.+.+... ...+...|++|||+|.|.. ...|
T Consensus 80 ~~i~~g~~~D~ieidaas~------~~VddiR~li~~~~~~-p~~g~~KV~IIDEah~Ls~---------------~a~N 137 (647)
T PRK07994 80 REIEQGRFVDLIEIDAASR------TKVEDTRELLDNVQYA-PARGRFKVYLIDEVHMLSR---------------HSFN 137 (647)
T ss_pred HHHHcCCCCCceeeccccc------CCHHHHHHHHHHHHhh-hhcCCCEEEEEechHhCCH---------------HHHH
Confidence 013455554321 1123344444443321 1224668999999998865 5679
Q ss_pred HHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 301 ALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 301 ~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
.||+.|+. ..+.+++|.+|+.+..+.+.+++|| ..++|.+++.++....++..+..
T Consensus 138 ALLKtLEE--Pp~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~ 193 (647)
T PRK07994 138 ALLKTLEE--PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQA 193 (647)
T ss_pred HHHHHHHc--CCCCeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHH
Confidence 99999886 4456666666777888889999997 89999999999998888877644
No 76
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=3.6e-13 Score=140.71 Aligned_cols=174 Identities=23% Similarity=0.356 Sum_probs=141.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEE
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLI 273 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illI 273 (426)
+-.+||||+||||||+++++.|.+++.++ ++++|.++.+...+..+......|.+++.. .|+|+|+
T Consensus 431 ~~~vLLhG~~g~GK~t~V~~vas~lg~h~---------~evdc~el~~~s~~~~etkl~~~f~~a~~~-----~pavifl 496 (953)
T KOG0736|consen 431 NPSVLLHGPPGSGKTTVVRAVASELGLHL---------LEVDCYELVAESASHTETKLQAIFSRARRC-----SPAVLFL 496 (953)
T ss_pred ceEEEEeCCCCCChHHHHHHHHHHhCCce---------EeccHHHHhhcccchhHHHHHHHHHHHhhc-----CceEEEE
Confidence 56799999999999999999999998766 999999998887788888899999999884 8999999
Q ss_pred echhhHHHHhhhhccCCCCChhHHHHHHHHHHhh--hhc-CCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHH
Q 014376 274 DEVESLAAARKAALSGSEPSDSIRVVNALLTQMD--KLK-SSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARY 350 (426)
Q Consensus 274 DEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld--~l~-~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~ 350 (426)
-.+|.+.-.+ .|++ +.+....+-.++. .++ ..+.++|++|++..+.+.+.+++-|-..+.++.|+.++|.
T Consensus 497 ~~~dvl~id~----dgge---d~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl 569 (953)
T KOG0736|consen 497 RNLDVLGIDQ----DGGE---DARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRL 569 (953)
T ss_pred eccceeeecC----CCch---hHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHH
Confidence 9999887432 1233 3344333333332 233 5678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhccCchHHHHhhh
Q 014376 351 EILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADR 397 (426)
Q Consensus 351 ~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~s~~di~~~~~ 397 (426)
+|++.++..+.- ..+..+...+..+.|++.+++.....
T Consensus 570 ~iLq~y~~~~~~---------n~~v~~k~~a~~t~gfs~~~L~~l~~ 607 (953)
T KOG0736|consen 570 EILQWYLNHLPL---------NQDVNLKQLARKTSGFSFGDLEALVA 607 (953)
T ss_pred HHHHHHHhcccc---------chHHHHHHHHHhcCCCCHHHHHHHhc
Confidence 999999987642 33446678889999999999887643
No 77
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.47 E-value=1.5e-12 Score=128.65 Aligned_cols=159 Identities=21% Similarity=0.292 Sum_probs=106.6
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEe
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVN 235 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~ 235 (426)
..++++++++++++.+..++.. |-- +..++|+||||+|||++++++++.++.+ +++++
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~-------~~~------~~~lll~G~~G~GKT~la~~l~~~~~~~---------~~~i~ 75 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKK-------GRI------PNMLLHSPSPGTGKTTVAKALCNEVGAE---------VLFVN 75 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhc-------CCC------CeEEEeeCcCCCCHHHHHHHHHHHhCcc---------ceEec
Confidence 3578999999999999888652 221 2457779999999999999999987543 36777
Q ss_pred ccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcE
Q 014376 236 AHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNV 315 (426)
Q Consensus 236 ~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~v 315 (426)
+.+ .+ . ..++...............+.+++|||+|.+... ...+.+.+.++.. ..++
T Consensus 76 ~~~--~~-~----~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~--------------~~~~~L~~~le~~--~~~~ 132 (316)
T PHA02544 76 GSD--CR-I----DFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA--------------DAQRHLRSFMEAY--SKNC 132 (316)
T ss_pred cCc--cc-H----HHHHHHHHHHHHhhcccCCCeEEEEECcccccCH--------------HHHHHHHHHHHhc--CCCc
Confidence 765 11 1 1111111111111111135689999999877221 1233444455542 3556
Q ss_pred EEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHHH
Q 014376 316 IILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQEL 360 (426)
Q Consensus 316 iVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~l 360 (426)
.+|.|+|....+.+++++|| ..+.++.|+.+++.++++..+..+
T Consensus 133 ~~Ilt~n~~~~l~~~l~sR~-~~i~~~~p~~~~~~~il~~~~~~~ 176 (316)
T PHA02544 133 SFIITANNKNGIIEPLRSRC-RVIDFGVPTKEEQIEMMKQMIVRC 176 (316)
T ss_pred eEEEEcCChhhchHHHHhhc-eEEEeCCCCHHHHHHHHHHHHHHH
Confidence 77778888888999999999 578899999999988887765544
No 78
>PLN03025 replication factor C subunit; Provisional
Probab=99.46 E-value=1.3e-12 Score=129.54 Aligned_cols=159 Identities=22% Similarity=0.214 Sum_probs=107.7
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEe
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVN 235 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~ 235 (426)
..|++++|++++.+.|..++.. +- ..+++|+|||||||||+++++|+.+.... ....+++++
T Consensus 10 ~~l~~~~g~~~~~~~L~~~~~~-------~~-------~~~lll~Gp~G~GKTtla~~la~~l~~~~----~~~~~~eln 71 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQVIARD-------GN-------MPNLILSGPPGTGKTTSILALAHELLGPN----YKEAVLELN 71 (319)
T ss_pred CCHHHhcCcHHHHHHHHHHHhc-------CC-------CceEEEECCCCCCHHHHHHHHHHHHhccc----Cccceeeec
Confidence 3588999999998888776442 11 13599999999999999999999983211 112356677
Q ss_pred ccccccccccchHHHHHHHHHHHHHHHHh-----ccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc
Q 014376 236 AHSLFSKWFSESGKLVAKLFQKIQEMVEE-----ENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK 310 (426)
Q Consensus 236 ~~~l~~~~~~e~~~~v~~~f~~~~~~~~~-----~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~ 310 (426)
+.+..+ ...++.. ++.+... .....+++|||+|.+.. ...+.|+..++..
T Consensus 72 ~sd~~~------~~~vr~~---i~~~~~~~~~~~~~~~kviiiDE~d~lt~---------------~aq~aL~~~lE~~- 126 (319)
T PLN03025 72 ASDDRG------IDVVRNK---IKMFAQKKVTLPPGRHKIVILDEADSMTS---------------GAQQALRRTMEIY- 126 (319)
T ss_pred cccccc------HHHHHHH---HHHHHhccccCCCCCeEEEEEechhhcCH---------------HHHHHHHHHHhcc-
Confidence 655322 1112222 1111111 13467999999999865 2346677776542
Q ss_pred CCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 311 SSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 311 ~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
.+.+.++.++|....+.+++++|+ ..+.+++|+.++....++..+++
T Consensus 127 -~~~t~~il~~n~~~~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~ 173 (319)
T PLN03025 127 -SNTTRFALACNTSSKIIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEA 173 (319)
T ss_pred -cCCceEEEEeCCccccchhHHHhh-hcccCCCCCHHHHHHHHHHHHHH
Confidence 334556667788888888999998 68899999999988888776654
No 79
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.5e-12 Score=131.32 Aligned_cols=166 Identities=19% Similarity=0.283 Sum_probs=110.4
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCC-CC-------
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSR-YP------- 227 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~-~~------- 227 (426)
..|++++|++.+++.|.+.+... .+ +..++|+||+|+||||+|+++|+.+....... .|
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~------~~-------~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c 79 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLG------RI-------HHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIIC 79 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcC------CC-------CeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 46899999999999888775421 11 24589999999999999999999986322100 01
Q ss_pred -------cceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHH
Q 014376 228 -------QCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVN 300 (426)
Q Consensus 228 -------~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~ 300 (426)
...++++++.+- .....++.+.+.+... .......+++|||+|.+.. ...+
T Consensus 80 ~~~~~~~~~d~~~~~~~~~------~~v~~ir~i~~~~~~~-p~~~~~kviIIDEa~~l~~---------------~a~n 137 (363)
T PRK14961 80 KEIEKGLCLDLIEIDAASR------TKVEEMREILDNIYYS-PSKSRFKVYLIDEVHMLSR---------------HSFN 137 (363)
T ss_pred HHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhcC-cccCCceEEEEEChhhcCH---------------HHHH
Confidence 012333333210 1122344444333211 1123457999999998854 3567
Q ss_pred HHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 301 ALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 301 ~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
.|++.++. ..+.+.+|.+++..+.+.+++++|+ ..+.+++++.++..++++..++.
T Consensus 138 aLLk~lEe--~~~~~~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~ 193 (363)
T PRK14961 138 ALLKTLEE--PPQHIKFILATTDVEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIK 193 (363)
T ss_pred HHHHHHhc--CCCCeEEEEEcCChHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHH
Confidence 78888776 3345555555666777888999998 78899999999999888887765
No 80
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.46 E-value=7.1e-13 Score=131.22 Aligned_cols=234 Identities=19% Similarity=0.249 Sum_probs=128.5
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcc-------cccCCC-Cc
Q 014376 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSI-------RFSSRY-PQ 228 (426)
Q Consensus 157 ~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~-------~~~~~~-~~ 228 (426)
-|..++|++++++.|.-.+.. .| ..++||.|+||+||||++|++++.+.. ++.... ..
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~~~------~~--------~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~ 71 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTAID------PG--------IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPED 71 (334)
T ss_pred CHHHhCCHHHHHHHHHHHHhc------cC--------CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccC
Confidence 478899999999887754321 11 256999999999999999999999832 110000 00
Q ss_pred c-eEEEEecccccc---------------ccccch--HHHH---HHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhc
Q 014376 229 C-QLVEVNAHSLFS---------------KWFSES--GKLV---AKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAAL 287 (426)
Q Consensus 229 ~-~~i~i~~~~l~~---------------~~~~e~--~~~v---~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~l 287 (426)
+ .........+.. ..+|.. .+.+ ...|+. ..+ ......+|++||++.+..
T Consensus 72 ~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~--G~l-~~A~~GiL~lDEInrl~~------ 142 (334)
T PRK13407 72 CPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEP--GLL-ARANRGYLYIDEVNLLED------ 142 (334)
T ss_pred CcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecC--Cce-EEcCCCeEEecChHhCCH------
Confidence 0 000000001100 011100 0000 000110 000 012346899999998865
Q ss_pred cCCCCChhHHHHHHHHHHhhhhc-----------CCCcEEEEEEeCCCC-cCCHHHhcccCeEEEeCCCCH-HHHHHHHH
Q 014376 288 SGSEPSDSIRVVNALLTQMDKLK-----------SSPNVIILTTSNITA-AIDIAFVDRADIKAYVGPPTL-QARYEILR 354 (426)
Q Consensus 288 s~~e~~~~~~~~~~ll~~ld~l~-----------~~~~viVi~TtN~~~-~ld~al~~R~~~~i~i~~p~~-~~r~~Il~ 354 (426)
..++.|+..|+.-. ....+++++|.|..+ .+.+++++||...+.+++|.. +++.++++
T Consensus 143 ---------~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~ 213 (334)
T PRK13407 143 ---------HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIR 213 (334)
T ss_pred ---------HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHH
Confidence 45666777765321 235689999999755 589999999999999998877 88899998
Q ss_pred HHHHHHH-HhCccccCCCCCCCchhhHHHHh---hcc-CchHHHHh----h-----hhHHHHHHHHHHHHHcccCCCcce
Q 014376 355 SCLQELI-RTGIISNFQDCDQSMLPNFSILK---EKL-SNPDIQEA----D-----RSQHFYKQLLEAAEACEVRNKMFH 420 (426)
Q Consensus 355 ~~l~~l~-~~~~i~~~~~~~~~~l~~l~~~~---~~~-s~~di~~~----~-----~~~~~~~~L~~~a~~~~glsgr~~ 420 (426)
.....-. ..................+.... ... ...++.+. + ...+....|+++|++.+.++||.+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A~l~Gr~~ 293 (334)
T PRK13407 214 RRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALAAFEGAEA 293 (334)
T ss_pred HhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHcCCCe
Confidence 7542110 00010000000111112222221 111 11122111 1 123455569999999999999998
Q ss_pred ee
Q 014376 421 LI 422 (426)
Q Consensus 421 ~~ 422 (426)
..
T Consensus 294 V~ 295 (334)
T PRK13407 294 VG 295 (334)
T ss_pred eC
Confidence 64
No 81
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.46 E-value=1.1e-12 Score=144.90 Aligned_cols=203 Identities=23% Similarity=0.349 Sum_probs=139.9
Q ss_pred cccchhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhccc-ccCCCCcce
Q 014376 152 KEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIR-FSSRYPQCQ 230 (426)
Q Consensus 152 ~~~~~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~-~~~~~~~~~ 230 (426)
...++.|+.++|.++..+++.+.+... . ..+++|+||||+|||++++.+|+.+... ......+..
T Consensus 172 ~a~~~~~~~~igr~~ei~~~~~~L~r~------~--------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~ 237 (821)
T CHL00095 172 EAIDGNLDPVIGREKEIERVIQILGRR------T--------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKL 237 (821)
T ss_pred HHHcCCCCCCCCcHHHHHHHHHHHccc------c--------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCe
Confidence 344577889999998888888765421 1 2358999999999999999999988421 111123567
Q ss_pred EEEEeccccc--cccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhh
Q 014376 231 LVEVNAHSLF--SKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK 308 (426)
Q Consensus 231 ~i~i~~~~l~--~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~ 308 (426)
++.++...+. .+|.|+.+..+..+++.+.. ..++||||||++.+...... .+ .....+.|...+
T Consensus 238 i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~-----~~~~ILfiDEih~l~~~g~~---~g----~~~~a~lLkp~l-- 303 (821)
T CHL00095 238 VITLDIGLLLAGTKYRGEFEERLKRIFDEIQE-----NNNIILVIDEVHTLIGAGAA---EG----AIDAANILKPAL-- 303 (821)
T ss_pred EEEeeHHHHhccCCCccHHHHHHHHHHHHHHh-----cCCeEEEEecHHHHhcCCCC---CC----cccHHHHhHHHH--
Confidence 7889888776 46778888888999988765 36789999999999864321 11 112333333333
Q ss_pred hcCCCcEEEEEEeCCCC-----cCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHH
Q 014376 309 LKSSPNVIILTTSNITA-----AIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSIL 383 (426)
Q Consensus 309 l~~~~~viVi~TtN~~~-----~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~ 383 (426)
..+.+.+|++|+..+ ..|++|.+||. .+.++.|+.++...|++..........-+. .....+..+..+
T Consensus 304 --~rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~----i~deal~~i~~l 376 (821)
T CHL00095 304 --ARGELQCIGATTLDEYRKHIEKDPALERRFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLS----ISDKALEAAAKL 376 (821)
T ss_pred --hCCCcEEEEeCCHHHHHHHHhcCHHHHhcce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHH
Confidence 346778888888764 35899999995 578999999999999987766544322221 122345666777
Q ss_pred hhccCc
Q 014376 384 KEKLSN 389 (426)
Q Consensus 384 ~~~~s~ 389 (426)
+.+|.+
T Consensus 377 s~~yi~ 382 (821)
T CHL00095 377 SDQYIA 382 (821)
T ss_pred hhccCc
Confidence 777743
No 82
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.46 E-value=2.7e-12 Score=129.29 Aligned_cols=179 Identities=17% Similarity=0.222 Sum_probs=114.3
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccc
Q 014376 159 ESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (426)
Q Consensus 159 ~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (426)
+.+++.++..+.|..++..... |-. +..++|+||||||||++++.+++.+............+++++|..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~----~~~------~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR----GSR------PSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc----CCC------CCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 3688899888888888764322 211 356999999999999999999998753221101115678888865
Q ss_pred ccccc--c----------c----chHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHH
Q 014376 239 LFSKW--F----------S----ESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNAL 302 (426)
Q Consensus 239 l~~~~--~----------~----e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~l 302 (426)
..+.+ + + ..+.....++..+...+.....+.+|+|||+|.+.... ..++..+
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~------------~~~L~~l 152 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD------------DDLLYQL 152 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC------------cHHHHhH
Confidence 43210 0 0 00001223344444444434567899999999996211 1234444
Q ss_pred HHHhhhh-cCCCcEEEEEEeCCCC---cCCHHHhcccC-eEEEeCCCCHHHHHHHHHHHHHH
Q 014376 303 LTQMDKL-KSSPNVIILTTSNITA---AIDIAFVDRAD-IKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 303 l~~ld~l-~~~~~viVi~TtN~~~---~ld~al~~R~~-~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
++..+.. ....++.+|+++|.+. .+++.+.+||. ..+++++++.++..+|++.+++.
T Consensus 153 ~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~ 214 (365)
T TIGR02928 153 SRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEK 214 (365)
T ss_pred hccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHh
Confidence 4431111 1225677788888775 46888888985 67899999999999999998864
No 83
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.45 E-value=7.3e-13 Score=146.47 Aligned_cols=179 Identities=19% Similarity=0.301 Sum_probs=124.3
Q ss_pred cccchhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhccccc-CCCCcce
Q 014376 152 KEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS-SRYPQCQ 230 (426)
Q Consensus 152 ~~~~~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~-~~~~~~~ 230 (426)
.--.+.++.++|.+....++.+.+.. +. ..+++|+||||+|||++++.+|+.+..... ....+..
T Consensus 171 ~~r~~~l~~vigr~~ei~~~i~iL~r------~~--------~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~ 236 (857)
T PRK10865 171 RAEQGKLDPVIGRDEEIRRTIQVLQR------RT--------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRR 236 (857)
T ss_pred HHhcCCCCcCCCCHHHHHHHHHHHhc------CC--------cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCE
Confidence 33446778899998876666554332 11 234899999999999999999999843210 0012456
Q ss_pred EEEEeccccc--cccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhh
Q 014376 231 LVEVNAHSLF--SKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK 308 (426)
Q Consensus 231 ~i~i~~~~l~--~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~ 308 (426)
++.++...+. .++.++....+..+|+.+... ..++||||||++.+.....+ ..+....+.|...+
T Consensus 237 ~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~----~~~~ILfIDEih~l~~~~~~-------~~~~d~~~~lkp~l-- 303 (857)
T PRK10865 237 VLALDMGALVAGAKYRGEFEERLKGVLNDLAKQ----EGNVILFIDELHTMVGAGKA-------DGAMDAGNMLKPAL-- 303 (857)
T ss_pred EEEEehhhhhhccchhhhhHHHHHHHHHHHHHc----CCCeEEEEecHHHhccCCCC-------ccchhHHHHhcchh--
Confidence 6777777765 456677777888888776432 46789999999999764321 11123334443333
Q ss_pred hcCCCcEEEEEEeCCCCc-----CCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHHH
Q 014376 309 LKSSPNVIILTTSNITAA-----IDIAFVDRADIKAYVGPPTLQARYEILRSCLQEL 360 (426)
Q Consensus 309 l~~~~~viVi~TtN~~~~-----ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~l 360 (426)
..+.+.+|++|+..+. +|+++.+||+ .+.++.|+.+++..|++......
T Consensus 304 --~~g~l~~IgaTt~~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~ 357 (857)
T PRK10865 304 --ARGELHCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERY 357 (857)
T ss_pred --hcCCCeEEEcCCCHHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhh
Confidence 3578888888888763 6999999997 57899999999999998765543
No 84
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.45 E-value=1.3e-12 Score=141.75 Aligned_cols=169 Identities=20% Similarity=0.247 Sum_probs=115.3
Q ss_pred hhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccc
Q 014376 160 SLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (426)
Q Consensus 160 ~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (426)
.++|++++++.|.+.+... ..|+.... .....+||+||||||||.+|+++|+.++.++ +.+++.++
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~----~~gl~~~~-kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~---------i~id~se~ 524 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMS----RAGLGHEH-KPVGSFLFAGPTGVGKTEVTVQLSKALGIEL---------LRFDMSEY 524 (758)
T ss_pred eEeCcHHHHHHHHHHHHHH----hccccCCC-CCcceEEEECCCCCCHHHHHHHHHHHhCCCc---------EEeechhh
Confidence 4788888888888876543 23332100 0124699999999999999999999996544 67776654
Q ss_pred cc-----ccccch----HHHH-HHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhh
Q 014376 240 FS-----KWFSES----GKLV-AKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL 309 (426)
Q Consensus 240 ~~-----~~~~e~----~~~v-~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l 309 (426)
.. +.+|.. +... ..+...++. ...+|++|||+|++.+ .+.+.|+..|+.-
T Consensus 525 ~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~-----~p~sVlllDEieka~~---------------~v~~~LLq~ld~G 584 (758)
T PRK11034 525 MERHTVSRLIGAPPGYVGFDQGGLLTDAVIK-----HPHAVLLLDEIEKAHP---------------DVFNLLLQVMDNG 584 (758)
T ss_pred cccccHHHHcCCCCCcccccccchHHHHHHh-----CCCcEEEeccHhhhhH---------------HHHHHHHHHHhcC
Confidence 32 122211 1101 111222222 3558999999999965 5778888888732
Q ss_pred --c-------CCCcEEEEEEeCCC-------------------------CcCCHHHhcccCeEEEeCCCCHHHHHHHHHH
Q 014376 310 --K-------SSPNVIILTTSNIT-------------------------AAIDIAFVDRADIKAYVGPPTLQARYEILRS 355 (426)
Q Consensus 310 --~-------~~~~viVi~TtN~~-------------------------~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~ 355 (426)
. ...+++||+|||.. ..+.+.|+.|+|.++.|.+++.++..+|+..
T Consensus 585 ~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~ 664 (758)
T PRK11034 585 TLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDK 664 (758)
T ss_pred eeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHH
Confidence 1 12578899999943 1256889999999999999999999999998
Q ss_pred HHHHHHH
Q 014376 356 CLQELIR 362 (426)
Q Consensus 356 ~l~~l~~ 362 (426)
.+.++..
T Consensus 665 ~l~~~~~ 671 (758)
T PRK11034 665 FIVELQA 671 (758)
T ss_pred HHHHHHH
Confidence 8876543
No 85
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=1.4e-12 Score=142.55 Aligned_cols=166 Identities=18% Similarity=0.161 Sum_probs=112.5
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccc------cCCC---
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRF------SSRY--- 226 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~------~~~~--- 226 (426)
..|++++|++.+++.|.+++.. |-- +..+||+||+|+||||+++.||+.+.... ++.+
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~-------~ri------~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC 78 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDS-------GRI------NHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSC 78 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHh-------CCC------CceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHH
Confidence 4699999999999999888653 111 24589999999999999999999996421 1111
Q ss_pred --------CcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHH
Q 014376 227 --------PQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRV 298 (426)
Q Consensus 227 --------~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~ 298 (426)
.+..++++++.+.. ....++.+.+.+.. ........|+||||+|.|.. ..
T Consensus 79 ~~~~~g~~~~~dv~eidaas~~------~Vd~iR~l~~~~~~-~p~~~~~KV~IIDEad~lt~---------------~a 136 (824)
T PRK07764 79 VALAPGGPGSLDVTEIDAASHG------GVDDARELRERAFF-APAESRYKIFIIDEAHMVTP---------------QG 136 (824)
T ss_pred HHHHcCCCCCCcEEEecccccC------CHHHHHHHHHHHHh-chhcCCceEEEEechhhcCH---------------HH
Confidence 12234455443211 12233333222211 11124668999999999975 46
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 299 VNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 299 ~~~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
.|.||+.|+.. ...++||.+++..+.|-..+++|+ .++.|..++.++..++++..+++
T Consensus 137 ~NaLLK~LEEp--P~~~~fIl~tt~~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~ 194 (824)
T PRK07764 137 FNALLKIVEEP--PEHLKFIFATTEPDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQ 194 (824)
T ss_pred HHHHHHHHhCC--CCCeEEEEEeCChhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHH
Confidence 78899998863 345666656677777888899998 78899999988888887776543
No 86
>PRK04195 replication factor C large subunit; Provisional
Probab=99.45 E-value=1.9e-12 Score=135.23 Aligned_cols=162 Identities=21% Similarity=0.294 Sum_probs=109.6
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEec
Q 014376 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (426)
Q Consensus 157 ~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (426)
.+++++|++++++.|..++.... .|.. .+.+||+||||+||||+|+++|+.++.. ++++++
T Consensus 12 ~l~dlvg~~~~~~~l~~~l~~~~----~g~~------~~~lLL~GppG~GKTtla~ala~el~~~---------~ielna 72 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREWIESWL----KGKP------KKALLLYGPPGVGKTSLAHALANDYGWE---------VIELNA 72 (482)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHh----cCCC------CCeEEEECCCCCCHHHHHHHHHHHcCCC---------EEEEcc
Confidence 47889999999999999986533 2322 4679999999999999999999999644 488888
Q ss_pred cccccccccchHHHHHHHHHHHHHHHHhc-cCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcE
Q 014376 237 HSLFSKWFSESGKLVAKLFQKIQEMVEEE-NNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNV 315 (426)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~~~~~~~~~~-~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~v 315 (426)
++... ...+..+...+.....-. ....+|+|||+|.+... .....+++++..++. .+.
T Consensus 73 sd~r~------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~-----------~d~~~~~aL~~~l~~----~~~ 131 (482)
T PRK04195 73 SDQRT------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGN-----------EDRGGARAILELIKK----AKQ 131 (482)
T ss_pred ccccc------HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccc-----------cchhHHHHHHHHHHc----CCC
Confidence 66432 122222222221110111 25679999999988541 112345666666552 233
Q ss_pred EEEEEeCCCCcCCH-HHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 316 IILTTSNITAAIDI-AFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 316 iVi~TtN~~~~ld~-al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
.+|+++|.+..+.. .+++|+ ..+.|++|+..++..+++..+..
T Consensus 132 ~iIli~n~~~~~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~ 175 (482)
T PRK04195 132 PIILTANDPYDPSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRK 175 (482)
T ss_pred CEEEeccCccccchhhHhccc-eEEEecCCCHHHHHHHHHHHHHH
Confidence 34455677777766 666776 78999999999999888887754
No 87
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=2e-12 Score=133.67 Aligned_cols=166 Identities=18% Similarity=0.222 Sum_probs=117.0
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccC------C----
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSS------R---- 225 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~------~---- 225 (426)
..|++++|++.+++.|.+.+.. |-- +..+||+||+|+||||+|+.+|+.++..... .
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~-------~ri------~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C 76 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTL-------NKI------PQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNC 76 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------CCC------CceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHH
Confidence 4689999999999988766542 211 3579999999999999999999988543211 0
Q ss_pred -----CCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHH
Q 014376 226 -----YPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVN 300 (426)
Q Consensus 226 -----~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~ 300 (426)
..+..++++++.+-. ....++.+.+.+.... -.....+++|||++.+.. ..+|
T Consensus 77 ~~i~~~~~~Dv~eidaas~~------~vddIR~Iie~~~~~P-~~~~~KVvIIDEah~Ls~---------------~A~N 134 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAASNT------SVDDIKVILENSCYLP-ISSKFKVYIIDEVHMLSN---------------SAFN 134 (491)
T ss_pred HHHhccCCCCEEEEecccCC------CHHHHHHHHHHHHhcc-ccCCceEEEEeChHhCCH---------------HHHH
Confidence 112345677665321 2344555555544321 224568999999988854 4678
Q ss_pred HHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 301 ALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 301 ~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
+|++.|+. ..+.+++|.+++....+...+++|+ ..+.+.+++.++..+.++..+++
T Consensus 135 aLLK~LEe--Pp~~v~fIlatte~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~ 190 (491)
T PRK14964 135 ALLKTLEE--PAPHVKFILATTEVKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKK 190 (491)
T ss_pred HHHHHHhC--CCCCeEEEEEeCChHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHH
Confidence 89999886 3455666666677777888999998 67899999999888888776654
No 88
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.44 E-value=2.1e-12 Score=132.38 Aligned_cols=154 Identities=20% Similarity=0.322 Sum_probs=106.7
Q ss_pred hhhhhhhchhhHHHH---HHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEE
Q 014376 156 GMWESLIYESGLKQR---LLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLV 232 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~---L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i 232 (426)
..+++++|++.+... |.+.+.. +. ...++|+|||||||||+|+++|+.++.++ +
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~-------~~-------~~~ilL~GppGtGKTtLA~~ia~~~~~~~---------~ 65 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA-------GR-------LSSMILWGPPGTGKTTLARIIAGATDAPF---------E 65 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc-------CC-------CceEEEECCCCCCHHHHHHHHHHHhCCCE---------E
Confidence 357889999887544 6555431 11 23699999999999999999999986544 6
Q ss_pred EEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCC
Q 014376 233 EVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS 312 (426)
Q Consensus 233 ~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~ 312 (426)
.+++... ....++.+++.+..... .....+|+|||++.+... ..+.|+..++.
T Consensus 66 ~l~a~~~-------~~~~ir~ii~~~~~~~~-~g~~~vL~IDEi~~l~~~---------------~q~~LL~~le~---- 118 (413)
T PRK13342 66 ALSAVTS-------GVKDLREVIEEARQRRS-AGRRTILFIDEIHRFNKA---------------QQDALLPHVED---- 118 (413)
T ss_pred EEecccc-------cHHHHHHHHHHHHHhhh-cCCceEEEEechhhhCHH---------------HHHHHHHHhhc----
Confidence 6665432 23345555555543221 235689999999988652 34556666543
Q ss_pred CcEEEEEEe--CCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHHH
Q 014376 313 PNVIILTTS--NITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQEL 360 (426)
Q Consensus 313 ~~viVi~Tt--N~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~l 360 (426)
+.+++++++ |....+++++++|+ ..+.+++++.++...+++..+...
T Consensus 119 ~~iilI~att~n~~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~ 167 (413)
T PRK13342 119 GTITLIGATTENPSFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDK 167 (413)
T ss_pred CcEEEEEeCCCChhhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHh
Confidence 445555443 44457899999999 788999999999999999877654
No 89
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.44 E-value=6.8e-13 Score=139.29 Aligned_cols=141 Identities=18% Similarity=0.330 Sum_probs=100.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEec
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDE 275 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDE 275 (426)
.++|||++|+|||+|++++++.+... .++..++++++.++...+...........|.+. .....+|+|||
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~----~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~------y~~~DLLlIDD 385 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRL----YPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRR------YREMDILLVDD 385 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHh----CCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHH------hhcCCEEEEeh
Confidence 39999999999999999999988431 245667888887776544332221111122221 12457999999
Q ss_pred hhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCc---CCHHHhccc--CeEEEeCCCCHHHHH
Q 014376 276 VESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAA---IDIAFVDRA--DIKAYVGPPTLQARY 350 (426)
Q Consensus 276 id~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~---ld~al~~R~--~~~i~i~~p~~~~r~ 350 (426)
++.+..+. .....|++.++.+...++.+||++...+.. +++.|++|| +..+.+..|+.+.|.
T Consensus 386 Iq~l~gke-------------~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~ 452 (617)
T PRK14086 386 IQFLEDKE-------------STQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRI 452 (617)
T ss_pred hccccCCH-------------HHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHH
Confidence 99886432 334667788888777666677766555543 588899998 678899999999999
Q ss_pred HHHHHHHHH
Q 014376 351 EILRSCLQE 359 (426)
Q Consensus 351 ~Il~~~l~~ 359 (426)
+||+..+..
T Consensus 453 aIL~kka~~ 461 (617)
T PRK14086 453 AILRKKAVQ 461 (617)
T ss_pred HHHHHHHHh
Confidence 999987765
No 90
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=1.8e-12 Score=135.58 Aligned_cols=166 Identities=19% Similarity=0.235 Sum_probs=113.7
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhccccc------CCCC--
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS------SRYP-- 227 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~------~~~~-- 227 (426)
..|++++|++.+++.|.+++... .+ +..+||+||+|+||||+|+++|+.++.... +.+.
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~~------~l-------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 79 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQQ------YL-------HHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENC 79 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhC------CC-------CeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHH
Confidence 46899999999999998887431 11 245899999999999999999999965321 0011
Q ss_pred -------cceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHH
Q 014376 228 -------QCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVN 300 (426)
Q Consensus 228 -------~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~ 300 (426)
+..++++++.+- .....++.+.+.+... .......|++|||+|.+.. ...|
T Consensus 80 ~~i~~g~~~d~~eidaas~------~~v~~iR~l~~~~~~~-p~~~~~kV~iIDE~~~ls~---------------~a~n 137 (509)
T PRK14958 80 REIDEGRFPDLFEVDAASR------TKVEDTRELLDNIPYA-PTKGRFKVYLIDEVHMLSG---------------HSFN 137 (509)
T ss_pred HHHhcCCCceEEEEccccc------CCHHHHHHHHHHHhhc-cccCCcEEEEEEChHhcCH---------------HHHH
Confidence 113556655321 1122344444433221 1124567999999999865 4578
Q ss_pred HHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 301 ALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 301 ~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
+|++.|+.. .+.+++|.+|+.+..+...+++|+ ..+++.+++..+....++..+++
T Consensus 138 aLLk~LEep--p~~~~fIlattd~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~ 193 (509)
T PRK14958 138 ALLKTLEEP--PSHVKFILATTDHHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKE 193 (509)
T ss_pred HHHHHHhcc--CCCeEEEEEECChHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHH
Confidence 899988863 445666666677777878899998 67889999888887777776654
No 91
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.44 E-value=2.6e-12 Score=123.80 Aligned_cols=139 Identities=24% Similarity=0.334 Sum_probs=91.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccc------cccccccchHHHH-HHHHHHH--------
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS------LFSKWFSESGKLV-AKLFQKI-------- 258 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~------l~~~~~~e~~~~v-~~~f~~~-------- 258 (426)
++.++|.||||||||++|+++|+.++.++ +.+++.. +++.+.+.....+ .......
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~---------~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPV---------MLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVR 91 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCE---------EEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccc
Confidence 45699999999999999999999887655 6665543 3333322211111 1110000
Q ss_pred -----HHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhh--------------cCCCcEEEEE
Q 014376 259 -----QEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL--------------KSSPNVIILT 319 (426)
Q Consensus 259 -----~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l--------------~~~~~viVi~ 319 (426)
..+........+++|||++.+.. .+.+.|+..|+.- +.++++.||+
T Consensus 92 ~~~~~g~l~~A~~~g~~lllDEi~r~~~---------------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIa 156 (262)
T TIGR02640 92 QNWVDNRLTLAVREGFTLVYDEFTRSKP---------------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIF 156 (262)
T ss_pred eeecCchHHHHHHcCCEEEEcchhhCCH---------------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEE
Confidence 00011112457999999998765 3455666666431 1235778999
Q ss_pred EeCCCC-----cCCHHHhcccCeEEEeCCCCHHHHHHHHHHHH
Q 014376 320 TSNITA-----AIDIAFVDRADIKAYVGPPTLQARYEILRSCL 357 (426)
Q Consensus 320 TtN~~~-----~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l 357 (426)
|+|... .++.++++|| ..++++.|+.++..+|++..+
T Consensus 157 TsN~~~~~g~~~l~~aL~~R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 157 TSNPVEYAGVHETQDALLDRL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred eeCCccccceecccHHHHhhc-EEEECCCCCHHHHHHHHHHhh
Confidence 999763 4689999998 789999999999999998764
No 92
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.44 E-value=5.3e-13 Score=137.74 Aligned_cols=143 Identities=14% Similarity=0.216 Sum_probs=101.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEec
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDE 275 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDE 275 (426)
.++|||++|+|||+|++++++.+... .++..++++++.++...+........ ..+..++. ......+|+|||
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~----~~~~~v~yv~~~~f~~~~~~~l~~~~-~~~~~~~~---~~~~~dvLiIDD 214 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESN----FSDLKVSYMSGDEFARKAVDILQKTH-KEIEQFKN---EICQNDVLIIDD 214 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHh----CCCCeEEEEEHHHHHHHHHHHHHHhh-hHHHHHHH---HhccCCEEEEec
Confidence 49999999999999999999987432 24566788888777654333222110 11122221 123557999999
Q ss_pred hhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCc---CCHHHhccc--CeEEEeCCCCHHHHH
Q 014376 276 VESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAA---IDIAFVDRA--DIKAYVGPPTLQARY 350 (426)
Q Consensus 276 id~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~---ld~al~~R~--~~~i~i~~p~~~~r~ 350 (426)
++.+..+. .....|+..++.+...+..+|+++...|.. +++.+.+|| +..+.+.+|+.+++.
T Consensus 215 iq~l~~k~-------------~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~ 281 (450)
T PRK14087 215 VQFLSYKE-------------KTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTAT 281 (450)
T ss_pred cccccCCH-------------HHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHH
Confidence 98775322 355678888887777777777776666654 478899998 678899999999999
Q ss_pred HHHHHHHHH
Q 014376 351 EILRSCLQE 359 (426)
Q Consensus 351 ~Il~~~l~~ 359 (426)
+|+++.++.
T Consensus 282 ~iL~~~~~~ 290 (450)
T PRK14087 282 AIIKKEIKN 290 (450)
T ss_pred HHHHHHHHh
Confidence 999998876
No 93
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.43 E-value=1.1e-11 Score=116.04 Aligned_cols=161 Identities=25% Similarity=0.332 Sum_probs=111.2
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEec
Q 014376 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (426)
Q Consensus 157 ~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (426)
-+++|+|.+..|+.|.+=. ..|- .|.+ ..++||+|+.|||||+++|++..++... +..+|++..
T Consensus 25 ~l~~L~Gie~Qk~~l~~Nt---~~Fl-~G~p------annvLL~G~rGtGKSSlVkall~~y~~~------GLRlIev~k 88 (249)
T PF05673_consen 25 RLDDLIGIERQKEALIENT---EQFL-QGLP------ANNVLLWGARGTGKSSLVKALLNEYADQ------GLRLIEVSK 88 (249)
T ss_pred CHHHhcCHHHHHHHHHHHH---HHHH-cCCC------CcceEEecCCCCCHHHHHHHHHHHHhhc------CceEEEECH
Confidence 4789999999999887543 2333 2443 3569999999999999999999998532 356788877
Q ss_pred cccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhh--cCCCc
Q 014376 237 HSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL--KSSPN 314 (426)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l--~~~~~ 314 (426)
.++. .+..+++.++. ....-|||+|++. + .+... ....|-..|++- ..+.|
T Consensus 89 ~~L~---------~l~~l~~~l~~----~~~kFIlf~DDLs-F----------e~~d~---~yk~LKs~LeGgle~~P~N 141 (249)
T PF05673_consen 89 EDLG---------DLPELLDLLRD----RPYKFILFCDDLS-F----------EEGDT---EYKALKSVLEGGLEARPDN 141 (249)
T ss_pred HHhc---------cHHHHHHHHhc----CCCCEEEEecCCC-C----------CCCcH---HHHHHHHHhcCccccCCCc
Confidence 6653 23333444332 2455799999843 1 11111 223444445532 34689
Q ss_pred EEEEEEeCCCCcCC-----------------------HHHhcccCeEEEeCCCCHHHHHHHHHHHHHHH
Q 014376 315 VIILTTSNITAAID-----------------------IAFVDRADIKAYVGPPTLQARYEILRSCLQEL 360 (426)
Q Consensus 315 viVi~TtN~~~~ld-----------------------~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~l 360 (426)
++|.+|+|+...+. -++-+||+..+.|.+|+.++..+|++.+++..
T Consensus 142 vliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~ 210 (249)
T PF05673_consen 142 VLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERY 210 (249)
T ss_pred EEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHc
Confidence 99999999764431 12458999999999999999999999999764
No 94
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.43 E-value=2.3e-12 Score=140.93 Aligned_cols=172 Identities=24% Similarity=0.275 Sum_probs=116.0
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEe
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVN 235 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~ 235 (426)
.+.+.++|++++++.+.+.+.. ...|+.... .....++|+||+|||||++|+++|+.++.+ ++.++
T Consensus 451 ~l~~~v~GQ~~ai~~l~~~i~~----~~~g~~~~~-~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~---------~~~~d 516 (731)
T TIGR02639 451 NLKAKIFGQDEAIDSLVSSIKR----SRAGLGNPN-KPVGSFLFTGPTGVGKTELAKQLAEALGVH---------LERFD 516 (731)
T ss_pred HHhcceeCcHHHHHHHHHHHHH----HhcCCCCCC-CCceeEEEECCCCccHHHHHHHHHHHhcCC---------eEEEe
Confidence 3456678888888877766543 234432100 012358999999999999999999999644 36666
Q ss_pred ccccccc---------cccchHHH-HHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHH
Q 014376 236 AHSLFSK---------WFSESGKL-VAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQ 305 (426)
Q Consensus 236 ~~~l~~~---------~~~e~~~~-v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ 305 (426)
+.++..+ ..+..+.. .+.+.+.++. ...+|++|||+|.+.+ .+.+.|+..
T Consensus 517 ~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~-----~p~~VvllDEieka~~---------------~~~~~Ll~~ 576 (731)
T TIGR02639 517 MSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRK-----HPHCVLLLDEIEKAHP---------------DIYNILLQV 576 (731)
T ss_pred CchhhhcccHHHHhcCCCCCcccchhhHHHHHHHh-----CCCeEEEEechhhcCH---------------HHHHHHHHh
Confidence 6554321 11111111 1122222222 4568999999998755 567888888
Q ss_pred hhhh---------cCCCcEEEEEEeCCCC-------------------------cCCHHHhcccCeEEEeCCCCHHHHHH
Q 014376 306 MDKL---------KSSPNVIILTTSNITA-------------------------AIDIAFVDRADIKAYVGPPTLQARYE 351 (426)
Q Consensus 306 ld~l---------~~~~~viVi~TtN~~~-------------------------~ld~al~~R~~~~i~i~~p~~~~r~~ 351 (426)
|+.- ....+++||+|||... .+.+.|++|++.++.|.+++.++..+
T Consensus 577 ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~ 656 (731)
T TIGR02639 577 MDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEK 656 (731)
T ss_pred hccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHH
Confidence 8742 1235788999998742 14678899999999999999999999
Q ss_pred HHHHHHHHHH
Q 014376 352 ILRSCLQELI 361 (426)
Q Consensus 352 Il~~~l~~l~ 361 (426)
|++..++++.
T Consensus 657 Iv~~~L~~l~ 666 (731)
T TIGR02639 657 IVQKFVDELS 666 (731)
T ss_pred HHHHHHHHHH
Confidence 9999988654
No 95
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.43 E-value=3e-12 Score=127.29 Aligned_cols=168 Identities=19% Similarity=0.263 Sum_probs=105.7
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEe
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVN 235 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~ 235 (426)
..|+++++++++++.|.+++.. +. ..+++|+||||||||++|+++++.+... .....+++++
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~~-------~~-------~~~lll~Gp~GtGKT~la~~~~~~l~~~----~~~~~~~~i~ 73 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVDS-------PN-------LPHLLVQGPPGSGKTAAVRALARELYGD----PWENNFTEFN 73 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHhC-------CC-------CceEEEECCCCCCHHHHHHHHHHHhcCc----ccccceEEec
Confidence 3588999999999998887642 11 1259999999999999999999988522 1123457777
Q ss_pred ccccccccc-------------cch---HHHHHHHHHHHHHHHH----hccCcEEEEEechhhHHHHhhhhccCCCCChh
Q 014376 236 AHSLFSKWF-------------SES---GKLVAKLFQKIQEMVE----EENNLVFVLIDEVESLAAARKAALSGSEPSDS 295 (426)
Q Consensus 236 ~~~l~~~~~-------------~e~---~~~v~~~f~~~~~~~~----~~~~~~illIDEid~l~~~r~~~ls~~e~~~~ 295 (426)
+.++...+. +.. .......|+.+..... ......+|+|||++.+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~-------------- 139 (337)
T PRK12402 74 VADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE-------------- 139 (337)
T ss_pred hhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH--------------
Confidence 766532210 000 0001222332221111 113456999999997743
Q ss_pred HHHHHHHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 296 IRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 296 ~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
...+.|...++.... .+.+|.+++.+..+.+.+.+|+ ..+.+.+|+.++...+++..+.+
T Consensus 140 -~~~~~L~~~le~~~~--~~~~Il~~~~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~ 199 (337)
T PRK12402 140 -DAQQALRRIMEQYSR--TCRFIIATRQPSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEA 199 (337)
T ss_pred -HHHHHHHHHHHhccC--CCeEEEEeCChhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHH
Confidence 233456666665432 2334444455556677888997 67899999999998888877654
No 96
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.43 E-value=3.6e-13 Score=131.78 Aligned_cols=137 Identities=22% Similarity=0.269 Sum_probs=92.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccc--cccch------HHHH----HHHHHHHHHH
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSK--WFSES------GKLV----AKLFQKIQEM 261 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~--~~~e~------~~~v----~~~f~~~~~~ 261 (426)
++.++|.||||||||++++.+|..++.++ +.++++...+. .+|.. +..+ ...+..+.
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~---------~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-- 132 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPC---------VRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-- 132 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCe---------EEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH--
Confidence 46699999999999999999999998776 55655443322 23321 1100 01112222
Q ss_pred HHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHH---------hhhhcCCCcEEEEEEeCCCC-------
Q 014376 262 VEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQ---------MDKLKSSPNVIILTTSNITA------- 325 (426)
Q Consensus 262 ~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~---------ld~l~~~~~viVi~TtN~~~------- 325 (426)
..+.++++||++...+... ..++.+|+. -..++.++.+.||+|.|..+
T Consensus 133 ----~~g~illlDEin~a~p~~~------------~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~ 196 (327)
T TIGR01650 133 ----QHNVALCFDEYDAGRPDVM------------FVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGL 196 (327)
T ss_pred ----hCCeEEEechhhccCHHHH------------HHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcc
Confidence 2568899999998755332 222333321 11233557899999999864
Q ss_pred -----cCCHHHhcccCeEEEeCCCCHHHHHHHHHHHH
Q 014376 326 -----AIDIAFVDRADIKAYVGPPTLQARYEILRSCL 357 (426)
Q Consensus 326 -----~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l 357 (426)
.++.|+++||-.++.+++|+.+...+|+....
T Consensus 197 y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 197 YHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred eeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhc
Confidence 25899999998888999999999999987654
No 97
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=3.8e-12 Score=134.37 Aligned_cols=166 Identities=16% Similarity=0.182 Sum_probs=114.6
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhccccc------CCC---
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS------SRY--- 226 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~------~~~--- 226 (426)
..|++++|++.+++.|.+++.. |-- +..+||+||+|+||||+|+++|+.+..... +.+
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~-------~r~------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 76 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDA-------GRI------NHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESC 76 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc-------CCC------CeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHH
Confidence 4699999999999999988653 211 245899999999999999999999874311 001
Q ss_pred --------CcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHH
Q 014376 227 --------PQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRV 298 (426)
Q Consensus 227 --------~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~ 298 (426)
.+..++++++.+.. .-..++.+.+.+... .......|++|||++.+.. ..
T Consensus 77 ~~i~~~~~~~~dvieidaas~~------gvd~iRel~~~~~~~-P~~~~~KVvIIDEah~Lt~---------------~A 134 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAASHG------GVDDTRELRDRAFYA-PAQSRYRIFIVDEAHMVTT---------------AG 134 (584)
T ss_pred HHhhcccCCCceEEEecccccc------CHHHHHHHHHHHHhh-hhcCCceEEEEECCCcCCH---------------HH
Confidence 11234455443221 123344443333221 1124567999999998865 46
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 299 VNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 299 ~~~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
.|+|++.|+. ..+.+++|.+|+.+..+.+++++|+ ..+.|..++.++..+.++..+++
T Consensus 135 ~NALLK~LEE--pp~~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~ 192 (584)
T PRK14952 135 FNALLKIVEE--PPEHLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQ 192 (584)
T ss_pred HHHHHHHHhc--CCCCeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHH
Confidence 7889999886 4456666666677788889999997 78999999998888887776654
No 98
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.42 E-value=8.3e-12 Score=127.09 Aligned_cols=175 Identities=25% Similarity=0.330 Sum_probs=116.0
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccc
Q 014376 159 ESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (426)
Q Consensus 159 ~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (426)
+.+++.++..+.|..++..... +-. +..++|+||||+|||++++.+++.+.... +...++++++..
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~----~~~------~~~~lI~G~~GtGKT~l~~~v~~~l~~~~----~~~~~v~in~~~ 95 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALR----GSR------PLNVLIYGPPGTGKTTTVKKVFEELEEIA----VKVVYVYINCQI 95 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC----CCC------CCeEEEECCCCCCHHHHHHHHHHHHHHhc----CCcEEEEEECCc
Confidence 4577888877778777654221 211 35699999999999999999999884321 345678898865
Q ss_pred cccc----------ccc----chHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHH
Q 014376 239 LFSK----------WFS----ESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLT 304 (426)
Q Consensus 239 l~~~----------~~~----e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~ 304 (426)
..+. ..+ ..+.....+++.+...+.....+.+|+|||+|.+.... ....+..+++
T Consensus 96 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~-----------~~~~l~~l~~ 164 (394)
T PRK00411 96 DRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE-----------GNDVLYSLLR 164 (394)
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC-----------CchHHHHHHH
Confidence 4321 001 11112344555555555555667899999999997211 1135566666
Q ss_pred HhhhhcCCCcEEEEEEeCCCC---cCCHHHhcccC-eEEEeCCCCHHHHHHHHHHHHHH
Q 014376 305 QMDKLKSSPNVIILTTSNITA---AIDIAFVDRAD-IKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 305 ~ld~l~~~~~viVi~TtN~~~---~ld~al~~R~~-~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
.++.... .++.+|+++|... .+++.+.+|+. ..+.+++++.++..+|++..++.
T Consensus 165 ~~~~~~~-~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~ 222 (394)
T PRK00411 165 AHEEYPG-ARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEE 222 (394)
T ss_pred hhhccCC-CeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHh
Confidence 6554432 3666777777653 36777888874 56899999999999999988854
No 99
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.42 E-value=1.8e-12 Score=128.69 Aligned_cols=235 Identities=14% Similarity=0.157 Sum_probs=132.8
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcc-------cccCCCCc
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSI-------RFSSRYPQ 228 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~-------~~~~~~~~ 228 (426)
.-|..++|++++|..|+..+..+ + -.+++|.|++|||||+++|++++.+.. +|. .+|.
T Consensus 14 ~pf~~ivGq~~~k~al~~~~~~p------~--------~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p~ 78 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNVIDP------K--------IGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHPS 78 (350)
T ss_pred CCHHHHhChHHHHHHHHHhccCC------C--------CCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCCC
Confidence 45889999999999988665431 1 246999999999999999999998842 111 1111
Q ss_pred ce-------------------------EEEEeccccccccccchHHHHHHHHHHHHHH----HHhccCcEEEEEechhhH
Q 014376 229 CQ-------------------------LVEVNAHSLFSKWFSESGKLVAKLFQKIQEM----VEEENNLVFVLIDEVESL 279 (426)
Q Consensus 229 ~~-------------------------~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~----~~~~~~~~illIDEid~l 279 (426)
.+ ++.+..+.--+..+|.. .+...|...... .-......+|++||++.+
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~i--D~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL 156 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTI--DIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL 156 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcc--cHHHHhhcCcccccCCeeeecCCCEEEecChHhC
Confidence 10 00000000000011100 011111111000 001234579999999998
Q ss_pred HHHhhhhccCCCCChhHHHHHHHHHHhhh----h-------cCCCcEEEEEEeCCCC-cCCHHHhcccCeEEEeCCCC-H
Q 014376 280 AAARKAALSGSEPSDSIRVVNALLTQMDK----L-------KSSPNVIILTTSNITA-AIDIAFVDRADIKAYVGPPT-L 346 (426)
Q Consensus 280 ~~~r~~~ls~~e~~~~~~~~~~ll~~ld~----l-------~~~~~viVi~TtN~~~-~ld~al~~R~~~~i~i~~p~-~ 346 (426)
.. ..+..|+..|+. + ....++++++|.|..+ .+.+++++||...+.+++|+ .
T Consensus 157 ~~---------------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~ 221 (350)
T CHL00081 157 DD---------------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDP 221 (350)
T ss_pred CH---------------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCCh
Confidence 76 345556666653 1 1235689999999766 58999999999999999998 5
Q ss_pred HHHHHHHHHHHHHHH-HhCccccCCCCCCCchhhHHHHhh---cc-CchHHHH----hh-----hhHHHHHHHHHHHHHc
Q 014376 347 QARYEILRSCLQELI-RTGIISNFQDCDQSMLPNFSILKE---KL-SNPDIQE----AD-----RSQHFYKQLLEAAEAC 412 (426)
Q Consensus 347 ~~r~~Il~~~l~~l~-~~~~i~~~~~~~~~~l~~l~~~~~---~~-s~~di~~----~~-----~~~~~~~~L~~~a~~~ 412 (426)
+.+.+|++....... ..................+....+ .. -..++.+ .+ .+.+....+.++|++.
T Consensus 222 ~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~ 301 (350)
T CHL00081 222 ELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKAL 301 (350)
T ss_pred HHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHH
Confidence 899999988542100 000000000001112222222221 11 1111111 11 1346777899999999
Q ss_pred ccCCCcceee
Q 014376 413 EVRNKMFHLI 422 (426)
Q Consensus 413 ~glsgr~~~~ 422 (426)
+-+.||.+.+
T Consensus 302 Aal~GR~~V~ 311 (350)
T CHL00081 302 AAFEGRTEVT 311 (350)
T ss_pred HHHcCCCCCC
Confidence 9999998754
No 100
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.42 E-value=1.4e-12 Score=129.30 Aligned_cols=167 Identities=20% Similarity=0.263 Sum_probs=101.8
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhc-------ccccCCCCcc-
Q 014376 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLS-------IRFSSRYPQC- 229 (426)
Q Consensus 158 ~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~-------~~~~~~~~~~- 229 (426)
|..++|++++|..|+-.+..+ ...+++|.|+||+||||+++++++.+. .++.. .|..
T Consensus 3 f~~ivgq~~~~~al~~~~~~~--------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~-~~~~~ 67 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDP--------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNS-SPSDP 67 (337)
T ss_pred ccccccHHHHHHHHHHHhcCC--------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCC-CCCCc
Confidence 567899999998876543221 135699999999999999999999983 22210 0000
Q ss_pred -------eE-----------------EEEeccccccccccchHHHHHHHHHH-----HHHHHHhccCcEEEEEechhhHH
Q 014376 230 -------QL-----------------VEVNAHSLFSKWFSESGKLVAKLFQK-----IQEMVEEENNLVFVLIDEVESLA 280 (426)
Q Consensus 230 -------~~-----------------i~i~~~~l~~~~~~e~~~~v~~~f~~-----~~~~~~~~~~~~illIDEid~l~ 280 (426)
.. +.+..+..-...+|.. .+...... -...+ ......++++||++.+.
T Consensus 68 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~--d~~~~l~~g~~~~~~GlL-~~A~~GvL~lDEi~~L~ 144 (337)
T TIGR02030 68 EMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTL--DIERALTEGVKAFEPGLL-ARANRGILYIDEVNLLE 144 (337)
T ss_pred cccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecch--hHhhHhhcCCEEeecCcc-eeccCCEEEecChHhCC
Confidence 00 0100000000111111 00000000 00011 11345799999999886
Q ss_pred HHhhhhccCCCCChhHHHHHHHHHHhhhh-----------cCCCcEEEEEEeCCCC-cCCHHHhcccCeEEEeCCCCH-H
Q 014376 281 AARKAALSGSEPSDSIRVVNALLTQMDKL-----------KSSPNVIILTTSNITA-AIDIAFVDRADIKAYVGPPTL-Q 347 (426)
Q Consensus 281 ~~r~~~ls~~e~~~~~~~~~~ll~~ld~l-----------~~~~~viVi~TtN~~~-~ld~al~~R~~~~i~i~~p~~-~ 347 (426)
. ..++.|+..|+.- ....++++++|+|..+ .+.+++++||...+.+++|.. +
T Consensus 145 ~---------------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~e 209 (337)
T TIGR02030 145 D---------------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVE 209 (337)
T ss_pred H---------------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHH
Confidence 5 4556666666531 1234689999999765 589999999999999999976 8
Q ss_pred HHHHHHHHHH
Q 014376 348 ARYEILRSCL 357 (426)
Q Consensus 348 ~r~~Il~~~l 357 (426)
++.+|++...
T Consensus 210 er~eIL~~~~ 219 (337)
T TIGR02030 210 LRVEIVERRT 219 (337)
T ss_pred HHHHHHHhhh
Confidence 8899988743
No 101
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=4.7e-12 Score=131.76 Aligned_cols=166 Identities=17% Similarity=0.240 Sum_probs=116.1
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhccccc----------CC
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS----------SR 225 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~----------~~ 225 (426)
..|++++|++.+.+.|...+.. |-- ...+||+||+|+||||+|+++|+.++.... ..
T Consensus 18 ~~f~dliGq~~vv~~L~~ai~~-------~ri------~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~ 84 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSYTILN-------DRL------AGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQ 84 (507)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------CCC------CceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCC
Confidence 4689999999999988876542 111 256999999999999999999999965321 11
Q ss_pred CC---------cceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhH
Q 014376 226 YP---------QCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSI 296 (426)
Q Consensus 226 ~~---------~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~ 296 (426)
+. +..++++++.+- .....++.+.+.+... .-.....|++|||++.+..
T Consensus 85 C~~C~~i~~~~h~Dv~eidaas~------~~vd~Ir~iie~a~~~-P~~~~~KVvIIDEa~~Ls~--------------- 142 (507)
T PRK06645 85 CTNCISFNNHNHPDIIEIDAASK------TSVDDIRRIIESAEYK-PLQGKHKIFIIDEVHMLSK--------------- 142 (507)
T ss_pred ChHHHHHhcCCCCcEEEeeccCC------CCHHHHHHHHHHHHhc-cccCCcEEEEEEChhhcCH---------------
Confidence 11 113444444221 1234455555554432 1124567999999998854
Q ss_pred HHHHHHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 297 RVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 297 ~~~~~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
..++.|++.|+. ..+.+++|.+++....+.+++++|+ ..+.+.+++.++...+++..+++
T Consensus 143 ~a~naLLk~LEe--pp~~~vfI~aTte~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~ 202 (507)
T PRK06645 143 GAFNALLKTLEE--PPPHIIFIFATTEVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQ 202 (507)
T ss_pred HHHHHHHHHHhh--cCCCEEEEEEeCChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHH
Confidence 457888888875 3456666666677788899999999 67899999999999999888865
No 102
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=3.5e-12 Score=135.20 Aligned_cols=166 Identities=19% Similarity=0.274 Sum_probs=115.1
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhccccc------CCCC--
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS------SRYP-- 227 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~------~~~~-- 227 (426)
..|++++|++.+++.|.+++.. +-- +..+||+||+|+||||+++++|+.++.... ..+.
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~-------~rl------~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sC 79 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDE-------GRL------HHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSC 79 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHc-------CCC------CeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHH
Confidence 4699999999999999888653 111 356999999999999999999999864321 1011
Q ss_pred -------cceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHH
Q 014376 228 -------QCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVN 300 (426)
Q Consensus 228 -------~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~ 300 (426)
...++++++.+- .....++.++..+... .......|++|||++.+.. ..++
T Consensus 80 r~i~~g~~~DvlEidaAs~------~gVd~IRelle~a~~~-P~~gk~KVIIIDEad~Ls~---------------~A~N 137 (709)
T PRK08691 80 TQIDAGRYVDLLEIDAASN------TGIDNIREVLENAQYA-PTAGKYKVYIIDEVHMLSK---------------SAFN 137 (709)
T ss_pred HHHhccCccceEEEecccc------CCHHHHHHHHHHHHhh-hhhCCcEEEEEECccccCH---------------HHHH
Confidence 112344443221 1123455555544322 1123567999999987753 4568
Q ss_pred HHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 301 ALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 301 ~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
.|++.|+. ..+.+.+|.+++.+..+...+++|| ..+.|..++.++...+++..+++
T Consensus 138 ALLKtLEE--Pp~~v~fILaTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~k 193 (709)
T PRK08691 138 AMLKTLEE--PPEHVKFILATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDS 193 (709)
T ss_pred HHHHHHHh--CCCCcEEEEEeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHH
Confidence 89999886 3455666666777888888999998 77889999999988888877664
No 103
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.42 E-value=2.9e-12 Score=142.17 Aligned_cols=181 Identities=19% Similarity=0.316 Sum_probs=123.6
Q ss_pred ccccchhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhccccc-CCCCcc
Q 014376 151 AKEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS-SRYPQC 229 (426)
Q Consensus 151 ~~~~~~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~-~~~~~~ 229 (426)
..-..+.++.++|.+....++.+.+.. .. ..+++|+||||+|||++++.+|+.+..... ....+.
T Consensus 165 ~~~~~~~~~~~igr~~ei~~~~~~l~r------~~--------~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~ 230 (852)
T TIGR03346 165 ERAREGKLDPVIGRDEEIRRTIQVLSR------RT--------KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNK 230 (852)
T ss_pred HHhhCCCCCcCCCcHHHHHHHHHHHhc------CC--------CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCC
Confidence 344456788899998876666655422 11 234889999999999999999998743210 001245
Q ss_pred eEEEEeccccc--cccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhh
Q 014376 230 QLVEVNAHSLF--SKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMD 307 (426)
Q Consensus 230 ~~i~i~~~~l~--~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld 307 (426)
.++.++...+. .+|.++.++.+..+|..+... ..++||||||++.+...... .......+.|...+
T Consensus 231 ~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~----~~~~ILfIDEih~l~~~g~~-------~~~~d~~~~Lk~~l- 298 (852)
T TIGR03346 231 RLLALDMGALIAGAKYRGEFEERLKAVLNEVTKS----EGQIILFIDELHTLVGAGKA-------EGAMDAGNMLKPAL- 298 (852)
T ss_pred eEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhc----CCCeEEEeccHHHhhcCCCC-------cchhHHHHHhchhh-
Confidence 66777766664 456677777777777776541 35799999999999753211 11122334333332
Q ss_pred hhcCCCcEEEEEEeCCCC-----cCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHHHH
Q 014376 308 KLKSSPNVIILTTSNITA-----AIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELI 361 (426)
Q Consensus 308 ~l~~~~~viVi~TtN~~~-----~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~l~ 361 (426)
..+.+.+|++|+..+ .+|+++.+||. .+.++.|+.+++..|++.....+.
T Consensus 299 ---~~g~i~~IgaTt~~e~r~~~~~d~al~rRf~-~i~v~~p~~~~~~~iL~~~~~~~e 353 (852)
T TIGR03346 299 ---ARGELHCIGATTLDEYRKYIEKDAALERRFQ-PVFVDEPTVEDTISILRGLKERYE 353 (852)
T ss_pred ---hcCceEEEEeCcHHHHHHHhhcCHHHHhcCC-EEEeCCCCHHHHHHHHHHHHHHhc
Confidence 457788888888774 36999999996 578999999999999988766653
No 104
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.41 E-value=3.7e-12 Score=134.18 Aligned_cols=174 Identities=18% Similarity=0.233 Sum_probs=110.8
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCC-CcceEEEE
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRY-PQCQLVEV 234 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~-~~~~~i~i 234 (426)
..|++++|++...+.+...+ +.. . +..++|+||||||||++|+++.+.......+.+ ++..++++
T Consensus 62 ~~f~~iiGqs~~i~~l~~al-----~~~---~------~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~i 127 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAAL-----CGP---N------PQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEI 127 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHH-----hCC---C------CceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEE
Confidence 45889999998887776432 111 1 356999999999999999999887643322222 25678999
Q ss_pred eccccc--c-----ccccchHHHH---HHHHHH------HHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHH
Q 014376 235 NAHSLF--S-----KWFSESGKLV---AKLFQK------IQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRV 298 (426)
Q Consensus 235 ~~~~l~--~-----~~~~e~~~~v---~~~f~~------~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~ 298 (426)
+|.... . ..++...... ...|.. -...+. .....+|+|||++.+... .
T Consensus 128 d~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~-~a~gG~L~IdEI~~L~~~---------------~ 191 (531)
T TIGR02902 128 DATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVT-RAHGGVLFIDEIGELHPV---------------Q 191 (531)
T ss_pred ccccccCCccccchhhcCCcccchhccccccccCCcccccCchhh-ccCCcEEEEechhhCCHH---------------H
Confidence 986421 1 1111000000 000000 000011 135589999999998763 4
Q ss_pred HHHHHHHhhhh---------------------------cCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHH
Q 014376 299 VNALLTQMDKL---------------------------KSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYE 351 (426)
Q Consensus 299 ~~~ll~~ld~l---------------------------~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~ 351 (426)
++.|+..|+.- .+....+|.+|++.++.+++++++|+ ..+++++++.+++.+
T Consensus 192 q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~-~~I~f~pL~~eei~~ 270 (531)
T TIGR02902 192 MNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRC-VEIFFRPLLDEEIKE 270 (531)
T ss_pred HHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhh-heeeCCCCCHHHHHH
Confidence 45566555431 01123566778888999999999998 578899999999999
Q ss_pred HHHHHHHHH
Q 014376 352 ILRSCLQEL 360 (426)
Q Consensus 352 Il~~~l~~l 360 (426)
|++..+++.
T Consensus 271 Il~~~a~k~ 279 (531)
T TIGR02902 271 IAKNAAEKI 279 (531)
T ss_pred HHHHHHHHc
Confidence 999988763
No 105
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=2.7e-12 Score=133.88 Aligned_cols=166 Identities=19% Similarity=0.232 Sum_probs=113.6
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccc-----cCCCC---
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRF-----SSRYP--- 227 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~-----~~~~~--- 227 (426)
..|++++|++.+++.|..++... .+ +..+||+|||||||||+|+++|+.+...- +..+.
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~------~l-------~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~ 77 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQG------RL-------GHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL 77 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcC------CC-------CeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH
Confidence 46999999999999998887531 11 34579999999999999999999986321 11111
Q ss_pred ------cceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHH
Q 014376 228 ------QCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNA 301 (426)
Q Consensus 228 ------~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ 301 (426)
+..++++++.+- .....++.+...+... .....+.+++|||+|.+.. ..++.
T Consensus 78 ~i~~~~h~dv~el~~~~~------~~vd~iR~l~~~~~~~-p~~~~~kVVIIDEad~ls~---------------~a~na 135 (504)
T PRK14963 78 AVRRGAHPDVLEIDAASN------NSVEDVRDLREKVLLA-PLRGGRKVYILDEAHMMSK---------------SAFNA 135 (504)
T ss_pred HHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhc-cccCCCeEEEEECccccCH---------------HHHHH
Confidence 123455554311 1123344443333321 1124567999999987643 45678
Q ss_pred HHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 302 LLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 302 ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
|+..++. ...++++|.+++.+..+.+.+.+|+ ..+.|.+++.++....++..+++
T Consensus 136 LLk~LEe--p~~~t~~Il~t~~~~kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~ 190 (504)
T PRK14963 136 LLKTLEE--PPEHVIFILATTEPEKMPPTILSRT-QHFRFRRLTEEEIAGKLRRLLEA 190 (504)
T ss_pred HHHHHHh--CCCCEEEEEEcCChhhCChHHhcce-EEEEecCCCHHHHHHHHHHHHHH
Confidence 8888775 2345666666777888899999998 58899999999998888877654
No 106
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.41 E-value=8.4e-13 Score=132.52 Aligned_cols=239 Identities=16% Similarity=0.194 Sum_probs=148.5
Q ss_pred HHHHHHHHHhcCCccCCCCCCCCCCChhhhcccceEEEEeCCCcccCCcceeeccccceeEEEecCCCCCcccccCCCCc
Q 014376 62 RLAVERMLEKRSLSYVDGPIPIPIDDPFLVENVQRICVSDTDEWVKNHDILLFWQVKPVVQVFQLSEEGPCEELSGDGQL 141 (426)
Q Consensus 62 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~~ 141 (426)
......|++. +.+..+.+.+..+|.|.... +.+. ............+ ...++ .. . .
T Consensus 14 ~~~~~~w~~~--~~~~~~~~~i~~pn~f~~~~-----~~~~-~~~i~~~~~~~~~-~~~~~-~~---~------~----- 69 (408)
T COG0593 14 ETEFESWIRP--LKVEESVLVLYAPNEFVRNW-----LNSK-LDLIKELLQELDG-IIKVE-VR---A------S----- 69 (408)
T ss_pred hhHHHHHHHH--hhcccceEEEEeCcHHHHHH-----HHhh-HHHHHHHHHHhcC-Cccee-ec---c------c-----
Confidence 4677889984 44455567777889998873 3333 2111111111122 23333 11 0 0
Q ss_pred cccccccc-cccccchhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 142 SSFNEWIL-PAKEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 142 ~~~~~~~l-p~~~~~~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
......+ .....+..|++++..+.-..........+.... ...+| ++||||.|+|||+|++++++....
T Consensus 70 -~~~q~~~~~~l~~~ytFdnFv~g~~N~~A~aa~~~va~~~g-~~~np--------lfi~G~~GlGKTHLl~Aign~~~~ 139 (408)
T COG0593 70 -APAQLPLPSGLNPKYTFDNFVVGPSNRLAYAAAKAVAENPG-GAYNP--------LFIYGGVGLGKTHLLQAIGNEALA 139 (408)
T ss_pred -cccccCccccCCCCCchhheeeCCchHHHHHHHHHHHhccC-CcCCc--------EEEECCCCCCHHHHHHHHHHHHHh
Confidence 0000001 123445678888777664332221111111110 12444 999999999999999999998854
Q ss_pred cccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHH
Q 014376 221 RFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVN 300 (426)
Q Consensus 221 ~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~ 300 (426)
. .++..++++.+..++..++......-..-|.+. . .-.+++||+++.+..+. +...
T Consensus 140 ~----~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~------y-~~dlllIDDiq~l~gk~-------------~~qe 195 (408)
T COG0593 140 N----GPNARVVYLTSEDFTNDFVKALRDNEMEKFKEK------Y-SLDLLLIDDIQFLAGKE-------------RTQE 195 (408)
T ss_pred h----CCCceEEeccHHHHHHHHHHHHHhhhHHHHHHh------h-ccCeeeechHhHhcCCh-------------hHHH
Confidence 3 567788888887776554433322111222221 1 33689999999886543 4578
Q ss_pred HHHHHhhhhcCCCcEEEEEEeCCCCcC---CHHHhccc--CeEEEeCCCCHHHHHHHHHHHHH
Q 014376 301 ALLTQMDKLKSSPNVIILTTSNITAAI---DIAFVDRA--DIKAYVGPPTLQARYEILRSCLQ 358 (426)
Q Consensus 301 ~ll~~ld~l~~~~~viVi~TtN~~~~l---d~al~~R~--~~~i~i~~p~~~~r~~Il~~~l~ 358 (426)
++++.++.+...++.+|+++...|..+ ++.+++|| +..+.+.+|+.+.|..|++...+
T Consensus 196 efFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 196 EFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred HHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 899999999988888888888888775 68899997 56789999999999999998554
No 107
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=2.1e-12 Score=136.87 Aligned_cols=166 Identities=18% Similarity=0.286 Sum_probs=112.2
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccc-----------cC
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRF-----------SS 224 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~-----------~~ 224 (426)
..|++++|++.+++.|.+++... .+ ...+||+||+|+||||+++++|+.++..- ++
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~------rl-------~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg 79 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQ------RL-------HHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCG 79 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC------CC-------CeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCC
Confidence 46899999999999998876531 11 24589999999999999999999996421 11
Q ss_pred CCCcc---------eEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChh
Q 014376 225 RYPQC---------QLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDS 295 (426)
Q Consensus 225 ~~~~~---------~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~ 295 (426)
.+..| .++++++.+- .....++.+...+... .......|++|||+|.+..
T Consensus 80 ~C~~C~~i~~g~h~D~~eldaas~------~~Vd~iReli~~~~~~-p~~g~~KV~IIDEvh~Ls~-------------- 138 (618)
T PRK14951 80 VCQACRDIDSGRFVDYTELDAASN------RGVDEVQQLLEQAVYK-PVQGRFKVFMIDEVHMLTN-------------- 138 (618)
T ss_pred ccHHHHHHHcCCCCceeecCcccc------cCHHHHHHHHHHHHhC-cccCCceEEEEEChhhCCH--------------
Confidence 11111 2334433221 1122344444433221 1123467999999999865
Q ss_pred HHHHHHHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 296 IRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 296 ~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
...|.|++.|+. ..+.+++|.+|+.+..+...+++|+ ..+.+..++.++..+.++..+.+
T Consensus 139 -~a~NaLLKtLEE--PP~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~ 198 (618)
T PRK14951 139 -TAFNAMLKTLEE--PPEYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAA 198 (618)
T ss_pred -HHHHHHHHhccc--CCCCeEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHH
Confidence 457888888776 3455666666666777878899998 88999999999888888776654
No 108
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.39 E-value=2.6e-11 Score=117.74 Aligned_cols=161 Identities=19% Similarity=0.319 Sum_probs=112.5
Q ss_pred hhhhhhhchhhHHHH---HHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEE
Q 014376 156 GMWESLIYESGLKQR---LLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLV 232 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~---L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i 232 (426)
...++.+|++.+..+ |..++. +..++ .++|+||||||||||||.|+.....+. -.++
T Consensus 135 ktL~dyvGQ~hlv~q~gllrs~ie------q~~ip--------SmIlWGppG~GKTtlArlia~tsk~~S------yrfv 194 (554)
T KOG2028|consen 135 KTLDDYVGQSHLVGQDGLLRSLIE------QNRIP--------SMILWGPPGTGKTTLARLIASTSKKHS------YRFV 194 (554)
T ss_pred chHHHhcchhhhcCcchHHHHHHH------cCCCC--------ceEEecCCCCchHHHHHHHHhhcCCCc------eEEE
Confidence 456777887765433 223222 11222 399999999999999999999875432 2346
Q ss_pred EEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCC
Q 014376 233 EVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS 312 (426)
Q Consensus 233 ~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~ 312 (426)
++++.. ..-+.++.+|.++++......+..|+|||||+.+....++ .||-.+ ..
T Consensus 195 elSAt~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD---------------~fLP~V----E~ 248 (554)
T KOG2028|consen 195 ELSATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQD---------------TFLPHV----EN 248 (554)
T ss_pred EEeccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhh---------------ccccee----cc
Confidence 666643 3456789999999887776678899999999999764432 233322 34
Q ss_pred CcEEEEEEe--CCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHHHHHh
Q 014376 313 PNVIILTTS--NITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRT 363 (426)
Q Consensus 313 ~~viVi~Tt--N~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~ 363 (426)
+.+++|++| |....+..++++|| +++.+.....+....|+.+.+.-+...
T Consensus 249 G~I~lIGATTENPSFqln~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~ds 300 (554)
T KOG2028|consen 249 GDITLIGATTENPSFQLNAALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDS 300 (554)
T ss_pred CceEEEecccCCCccchhHHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhccc
Confidence 566666544 34445799999999 778889999999999999877766543
No 109
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=1.2e-11 Score=129.57 Aligned_cols=166 Identities=22% Similarity=0.281 Sum_probs=111.8
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccC------CC---
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSS------RY--- 226 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~------~~--- 226 (426)
..|++++|++.+++.|.+.+... .+ ...+||+||+|+||||+|+.+|+.+...... .+
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~------rl-------~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC 79 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQ------KV-------HHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENC 79 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC------CC-------CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 46899999999999888776421 11 2458999999999999999999988642110 00
Q ss_pred ------CcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHH
Q 014376 227 ------PQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVN 300 (426)
Q Consensus 227 ------~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~ 300 (426)
....++++++..-. ....++.+.+.+.... ......|++|||+|.+.. ...+
T Consensus 80 ~~i~~~~~~dlieidaas~~------gvd~ir~ii~~~~~~p-~~g~~kViIIDEa~~ls~---------------~a~n 137 (546)
T PRK14957 80 VAINNNSFIDLIEIDAASRT------GVEETKEILDNIQYMP-SQGRYKVYLIDEVHMLSK---------------QSFN 137 (546)
T ss_pred HHHhcCCCCceEEeeccccc------CHHHHHHHHHHHHhhh-hcCCcEEEEEechhhccH---------------HHHH
Confidence 11234445432211 1123444544443321 224567999999998865 4678
Q ss_pred HHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 301 ALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 301 ~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
.|+..|+. ..+.+++|.+|+....+.+.+++|+ ..+++.+++.++....++..+++
T Consensus 138 aLLK~LEe--pp~~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~ 193 (546)
T PRK14957 138 ALLKTLEE--PPEYVKFILATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAK 193 (546)
T ss_pred HHHHHHhc--CCCCceEEEEECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHH
Confidence 89998886 3345555545555677777899998 88999999999988888776655
No 110
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.39 E-value=7.6e-12 Score=132.44 Aligned_cols=166 Identities=21% Similarity=0.305 Sum_probs=116.0
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhccccc------CCCC--
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS------SRYP-- 227 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~------~~~~-- 227 (426)
..|++++|++.+++.|.+.+.. +-- ++.+||+||+|||||++|+.+|+.+..... ..+.
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~-------~~~------~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C 79 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQ-------GKI------SHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEIC 79 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHc-------CCC------CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHH
Confidence 4699999999999999888653 111 356999999999999999999999864321 0011
Q ss_pred -------cceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHH
Q 014376 228 -------QCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVN 300 (426)
Q Consensus 228 -------~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~ 300 (426)
+..++++++.+ ......++.+...+... .......|++|||+|.+.. ...|
T Consensus 80 ~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~-p~~~~~kViIIDE~~~Lt~---------------~a~n 137 (559)
T PRK05563 80 KAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYA-PSEAKYKVYIIDEVHMLST---------------GAFN 137 (559)
T ss_pred HHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhC-cccCCeEEEEEECcccCCH---------------HHHH
Confidence 12344554422 12234455555554432 1224568999999998854 4578
Q ss_pred HHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 301 ALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 301 ~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
+|++.++. ....+++|.+|+.+..+.+.+++|+ ..+.|.+|+..+...+++..+++
T Consensus 138 aLLKtLEe--pp~~~ifIlatt~~~ki~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~~ 193 (559)
T PRK05563 138 ALLKTLEE--PPAHVIFILATTEPHKIPATILSRC-QRFDFKRISVEDIVERLKYILDK 193 (559)
T ss_pred HHHHHhcC--CCCCeEEEEEeCChhhCcHHHHhHh-eEEecCCCCHHHHHHHHHHHHHH
Confidence 89988875 3456666666677888999999998 56889999998888888776654
No 111
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.38 E-value=9.6e-12 Score=134.52 Aligned_cols=155 Identities=21% Similarity=0.286 Sum_probs=103.9
Q ss_pred hhhhhhhchhhHHH---HHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEE
Q 014376 156 GMWESLIYESGLKQ---RLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLV 232 (426)
Q Consensus 156 ~~~~~lv~~~~~k~---~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i 232 (426)
..+++++|++.+.. .|.+.+.. .. ..+++|+|||||||||+++++++.++.++ +
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~------~~--------~~slLL~GPpGtGKTTLA~aIA~~~~~~f---------~ 81 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKA------DR--------VGSLILYGPPGVGKTTLARIIANHTRAHF---------S 81 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhc------CC--------CceEEEECCCCCCHHHHHHHHHHHhcCcc---------e
Confidence 45788999988764 34444321 11 13599999999999999999999886443 5
Q ss_pred EEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCC
Q 014376 233 EVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS 312 (426)
Q Consensus 233 ~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~ 312 (426)
.+++... ..+.++..+..+...........+++|||+|.+... .++.|+..++ .
T Consensus 82 ~lna~~~-------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~---------------qQdaLL~~lE----~ 135 (725)
T PRK13341 82 SLNAVLA-------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA---------------QQDALLPWVE----N 135 (725)
T ss_pred eehhhhh-------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH---------------HHHHHHHHhc----C
Confidence 5665321 112334444444333333345679999999988652 2345665544 2
Q ss_pred CcEEEEEEe--CCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHHH
Q 014376 313 PNVIILTTS--NITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQEL 360 (426)
Q Consensus 313 ~~viVi~Tt--N~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~l 360 (426)
+.++++++| |....+++++++|+ ..+.+++++.+++..+++..+...
T Consensus 136 g~IiLI~aTTenp~~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~ 184 (725)
T PRK13341 136 GTITLIGATTENPYFEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQDK 184 (725)
T ss_pred ceEEEEEecCCChHhhhhhHhhccc-cceecCCCCHHHHHHHHHHHHHHH
Confidence 455666544 33345789999997 578999999999999999988754
No 112
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=5.6e-12 Score=132.51 Aligned_cols=166 Identities=19% Similarity=0.279 Sum_probs=112.9
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccC------CCC--
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSS------RYP-- 227 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~------~~~-- 227 (426)
..|++++|++.+++.|.+.+... .+ +..+||+||+|+||||+|+.+|+.+...... .+.
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~------~~-------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C 79 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQ------RL-------HHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSAC 79 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC------CC-------CEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 47899999999999888876531 11 2458999999999999999999999653210 000
Q ss_pred -------cceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHH
Q 014376 228 -------QCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVN 300 (426)
Q Consensus 228 -------~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~ 300 (426)
...++++++.+ ......++.+...+... .......|++|||+|.+.. ...|
T Consensus 80 ~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~-p~~~~~kVvIIDEad~ls~---------------~a~n 137 (527)
T PRK14969 80 LEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYA-PTRGRFKVYIIDEVHMLSK---------------SAFN 137 (527)
T ss_pred HHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhC-cccCCceEEEEcCcccCCH---------------HHHH
Confidence 01234444321 11123344554444321 1124567999999998864 4578
Q ss_pred HHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 301 ALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 301 ~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
.|++.|+. ..+.+++|.+|+.+..+...+++|+ ..+.|..++.++..+.++..+++
T Consensus 138 aLLK~LEe--pp~~~~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~ 193 (527)
T PRK14969 138 AMLKTLEE--PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQ 193 (527)
T ss_pred HHHHHHhC--CCCCEEEEEEeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHH
Confidence 89999876 3455666666666777777899998 78899999999888887776653
No 113
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.37 E-value=1.2e-11 Score=124.09 Aligned_cols=167 Identities=21% Similarity=0.313 Sum_probs=114.1
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhccccc------CCC---
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS------SRY--- 226 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~------~~~--- 226 (426)
..|++++|++.+++.|.+.+.. |-- +..+||+||||+|||++++++++.+..... +.+
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~-------~~~------~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c 77 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKN-------GRI------AHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESC 77 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHc-------CCC------CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 5789999999999998887642 211 356899999999999999999999853210 000
Q ss_pred ------CcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHH
Q 014376 227 ------PQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVN 300 (426)
Q Consensus 227 ------~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~ 300 (426)
.+..++++++... .....++.+++.+... .......+++|||+|.+.. ...+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~-p~~~~~~vviidea~~l~~---------------~~~~ 135 (355)
T TIGR02397 78 KEINSGSSLDVIEIDAASN------NGVDDIREILDNVKYA-PSSGKYKVYIIDEVHMLSK---------------SAFN 135 (355)
T ss_pred HHHhcCCCCCEEEeecccc------CCHHHHHHHHHHHhcC-cccCCceEEEEeChhhcCH---------------HHHH
Confidence 1123444544311 1223355555554332 1123457999999988854 3467
Q ss_pred HHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHHH
Q 014376 301 ALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQEL 360 (426)
Q Consensus 301 ~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~l 360 (426)
.+++.++. ..+.+++|.+++.+..+.+++++|+ ..+.+++|+..+..++++..+++.
T Consensus 136 ~Ll~~le~--~~~~~~lIl~~~~~~~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~ 192 (355)
T TIGR02397 136 ALLKTLEE--PPEHVVFILATTEPHKIPATILSRC-QRFDFKRIPLEDIVERLKKILDKE 192 (355)
T ss_pred HHHHHHhC--CccceeEEEEeCCHHHHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHc
Confidence 78888765 3355666666677777888999998 578999999999999998877653
No 114
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.37 E-value=1.5e-11 Score=131.50 Aligned_cols=166 Identities=21% Similarity=0.364 Sum_probs=114.7
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccC----CCCcc--
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSS----RYPQC-- 229 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~----~~~~~-- 229 (426)
..|++++|++.+++.|.+.+... .+ ...+||+||+|+|||++|+++|+.+...... .+..|
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~~------rl-------~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~ 81 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKSN------KI-------SHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIE 81 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC------CC-------CeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHH
Confidence 46999999999999888876531 11 3568999999999999999999998643210 00111
Q ss_pred ------eEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHH
Q 014376 230 ------QLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALL 303 (426)
Q Consensus 230 ------~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll 303 (426)
.++++++.+ ......++.+.+.+.... ......|++|||++.+.. ...++|+
T Consensus 82 ~~~~~~Dvieidaas------n~~vd~IReLie~~~~~P-~~g~~KV~IIDEa~~LT~---------------~A~NALL 139 (725)
T PRK07133 82 NVNNSLDIIEMDAAS------NNGVDEIRELIENVKNLP-TQSKYKIYIIDEVHMLSK---------------SAFNALL 139 (725)
T ss_pred hhcCCCcEEEEeccc------cCCHHHHHHHHHHHHhch-hcCCCEEEEEEChhhCCH---------------HHHHHHH
Confidence 122222211 011334566655554321 224567999999998864 3678899
Q ss_pred HHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 304 TQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 304 ~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
..|+. +++.+++|.+|+.++.+.+++++|+ ..+.+.+++.++...+++..+.+
T Consensus 140 KtLEE--PP~~tifILaTte~~KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il~k 192 (725)
T PRK07133 140 KTLEE--PPKHVIFILATTEVHKIPLTILSRV-QRFNFRRISEDEIVSRLEFILEK 192 (725)
T ss_pred HHhhc--CCCceEEEEEcCChhhhhHHHHhhc-eeEEccCCCHHHHHHHHHHHHHH
Confidence 98886 3456666666677888989999999 58899999999988888776544
No 115
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.36 E-value=2.1e-11 Score=114.41 Aligned_cols=132 Identities=17% Similarity=0.243 Sum_probs=87.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEE
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLI 273 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illI 273 (426)
++.++|+||+|||||++++++++.+... +..++++++..+.... ..++... ....+|+|
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~------~~~~~~i~~~~~~~~~--------~~~~~~~-------~~~~lLvI 96 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEER------GKSAIYLPLAELAQAD--------PEVLEGL-------EQADLVCL 96 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhc------CCcEEEEeHHHHHHhH--------HHHHhhc-------ccCCEEEE
Confidence 4679999999999999999999987422 2355778877664321 1222211 23468999
Q ss_pred echhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCcC---CHHHhccc--CeEEEeCCCCHHH
Q 014376 274 DEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAI---DIAFVDRA--DIKAYVGPPTLQA 348 (426)
Q Consensus 274 DEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~l---d~al~~R~--~~~i~i~~p~~~~ 348 (426)
||++.+.... .....++..++.....+..+|++++..+..+ ++.+.+|+ +..+.+++|+.++
T Consensus 97 Ddi~~l~~~~-------------~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e 163 (226)
T TIGR03420 97 DDVEAIAGQP-------------EWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEE 163 (226)
T ss_pred eChhhhcCCh-------------HHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHH
Confidence 9999875321 1234555556655444455555554444433 27788887 4788999999999
Q ss_pred HHHHHHHHHHH
Q 014376 349 RYEILRSCLQE 359 (426)
Q Consensus 349 r~~Il~~~l~~ 359 (426)
+..+++.+..+
T Consensus 164 ~~~~l~~~~~~ 174 (226)
T TIGR03420 164 KIAALQSRAAR 174 (226)
T ss_pred HHHHHHHHHHH
Confidence 99998876543
No 116
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=1e-11 Score=131.00 Aligned_cols=166 Identities=19% Similarity=0.213 Sum_probs=112.2
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhccccc------CCC---
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS------SRY--- 226 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~------~~~--- 226 (426)
..|++++|++.+++.|.+++... .+ ...+||+||+|+||||+|+.+|+.+..... ..+
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~~------ri-------~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC 79 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQEN------RV-------APAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQC 79 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHcC------CC-------CceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHH
Confidence 46899999999999998887531 11 146999999999999999999999964310 000
Q ss_pred ------CcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHH
Q 014376 227 ------PQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVN 300 (426)
Q Consensus 227 ------~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~ 300 (426)
.+..++++++..-. ....++.+.+.+.. ........|++|||+|.+.. ..++
T Consensus 80 ~~i~~g~hpDv~eId~a~~~------~Id~iR~L~~~~~~-~p~~g~~kVIIIDEad~Lt~---------------~a~n 137 (624)
T PRK14959 80 RKVTQGMHVDVVEIDGASNR------GIDDAKRLKEAIGY-APMEGRYKVFIIDEAHMLTR---------------EAFN 137 (624)
T ss_pred HHHhcCCCCceEEEeccccc------CHHHHHHHHHHHHh-hhhcCCceEEEEEChHhCCH---------------HHHH
Confidence 11124555442210 11223333222221 11224567999999998864 3568
Q ss_pred HHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 301 ALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 301 ~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
.|++.|+. ..+.+++|.+||.+..+...+++|+ ..+.|++++.++...+++..+.+
T Consensus 138 aLLk~LEE--P~~~~ifILaTt~~~kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~ 193 (624)
T PRK14959 138 ALLKTLEE--PPARVTFVLATTEPHKFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGR 193 (624)
T ss_pred HHHHHhhc--cCCCEEEEEecCChhhhhHHHHhhh-hccccCCCCHHHHHHHHHHHHHH
Confidence 88888876 3456777777777778888899998 57889999999988888775543
No 117
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=1e-11 Score=131.90 Aligned_cols=166 Identities=20% Similarity=0.300 Sum_probs=115.1
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhccccc------CCCC--
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS------SRYP-- 227 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~------~~~~-- 227 (426)
..|++++|++.+++.|.+++.. |-- ...+||+||+|+||||+++++|+.+...-. ..+.
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~-------~~~------~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c 79 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDT-------GRV------AHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPC 79 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHc-------CCC------CeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHH
Confidence 4699999999999999988653 211 356899999999999999999999864311 0011
Q ss_pred -------cceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHH
Q 014376 228 -------QCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVN 300 (426)
Q Consensus 228 -------~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~ 300 (426)
+..++++++.+- .....++.+...+... .......|++|||+|.+.. ...|
T Consensus 80 ~~i~~g~~~d~~eid~~s~------~~v~~ir~l~~~~~~~-p~~~~~KVvIIdev~~Lt~---------------~a~n 137 (576)
T PRK14965 80 VEITEGRSVDVFEIDGASN------TGVDDIRELRENVKYL-PSRSRYKIFIIDEVHMLST---------------NAFN 137 (576)
T ss_pred HHHhcCCCCCeeeeeccCc------cCHHHHHHHHHHHHhc-cccCCceEEEEEChhhCCH---------------HHHH
Confidence 122444544321 1123345555444322 1123557999999998865 4578
Q ss_pred HHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 301 ALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 301 ~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
.|++.|+. ..+.+++|.+|+.+..+...+++|+ ..+.|..++..+....++..+++
T Consensus 138 aLLk~LEe--pp~~~~fIl~t~~~~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~ 193 (576)
T PRK14965 138 ALLKTLEE--PPPHVKFIFATTEPHKVPITILSRC-QRFDFRRIPLQKIVDRLRYIADQ 193 (576)
T ss_pred HHHHHHHc--CCCCeEEEEEeCChhhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHH
Confidence 99999886 3456777767777888999999998 68889999888887777766554
No 118
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=5.2e-12 Score=120.68 Aligned_cols=152 Identities=24% Similarity=0.257 Sum_probs=102.7
Q ss_pred cccccccccchhhhhhhchhhHHHHHHHHHHHHHHHhhcC--CCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhccccc
Q 014376 146 EWILPAKEFDGMWESLIYESGLKQRLLHYAASALMFAEKG--VNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS 223 (426)
Q Consensus 146 ~~~lp~~~~~~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g--~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~ 223 (426)
..+-|..-..-+-+.++|++..|+.|.-.+.++...-... .+...+. ..+|||.||+|||||.||+.||+.++.||
T Consensus 48 ~lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~-KSNILLiGPTGsGKTlLAqTLAk~LnVPF- 125 (408)
T COG1219 48 ELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELS-KSNILLIGPTGSGKTLLAQTLAKILNVPF- 125 (408)
T ss_pred cCCChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeee-eccEEEECCCCCcHHHHHHHHHHHhCCCe-
Confidence 4445666666677789999999998876666544332211 1112222 35799999999999999999999999887
Q ss_pred CCCCcceEEEEecccccc-ccccchH-HHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHH
Q 014376 224 SRYPQCQLVEVNAHSLFS-KWFSESG-KLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNA 301 (426)
Q Consensus 224 ~~~~~~~~i~i~~~~l~~-~~~~e~~-~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ 301 (426)
..-++..|.. .|+|+.- ..+.++.+.+.--++. ...+|++|||||+++.+.. ..|-.-+-....++.+
T Consensus 126 --------aiADATtLTEAGYVGEDVENillkLlqaadydV~r-AerGIIyIDEIDKIarkSe-N~SITRDVSGEGVQQA 195 (408)
T COG1219 126 --------AIADATTLTEAGYVGEDVENILLKLLQAADYDVER-AERGIIYIDEIDKIARKSE-NPSITRDVSGEGVQQA 195 (408)
T ss_pred --------eeccccchhhccccchhHHHHHHHHHHHcccCHHH-HhCCeEEEechhhhhccCC-CCCcccccCchHHHHH
Confidence 6677777763 5666653 3345555544322222 3558999999999987653 2333333344578999
Q ss_pred HHHHhhhh
Q 014376 302 LLTQMDKL 309 (426)
Q Consensus 302 ll~~ld~l 309 (426)
||..+++-
T Consensus 196 LLKiiEGT 203 (408)
T COG1219 196 LLKIIEGT 203 (408)
T ss_pred HHHHHcCc
Confidence 99999854
No 119
>PRK06893 DNA replication initiation factor; Validated
Probab=99.34 E-value=6.9e-12 Score=118.44 Aligned_cols=132 Identities=11% Similarity=0.177 Sum_probs=86.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEE
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLI 273 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illI 273 (426)
+..++||||||||||+|++++|+.+.... ....+++.... ......++..+ ....+++|
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~------~~~~y~~~~~~--------~~~~~~~~~~~-------~~~dlLil 97 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQ------RTAIYIPLSKS--------QYFSPAVLENL-------EQQDLVCL 97 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcC------CCeEEeeHHHh--------hhhhHHHHhhc-------ccCCEEEE
Confidence 34589999999999999999999874321 12233333211 00111222221 24479999
Q ss_pred echhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEE-EEeCCCCcC---CHHHhccc--CeEEEeCCCCHH
Q 014376 274 DEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIIL-TTSNITAAI---DIAFVDRA--DIKAYVGPPTLQ 347 (426)
Q Consensus 274 DEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi-~TtN~~~~l---d~al~~R~--~~~i~i~~p~~~ 347 (426)
||++.+.... .....+++.++.....++.+++ +++..+..+ .+.+.+|+ +..+.+++|+.+
T Consensus 98 DDi~~~~~~~-------------~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e 164 (229)
T PRK06893 98 DDLQAVIGNE-------------EWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDE 164 (229)
T ss_pred eChhhhcCCh-------------HHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHH
Confidence 9999875322 2234577777777666665544 444456555 47888876 578899999999
Q ss_pred HHHHHHHHHHHH
Q 014376 348 ARYEILRSCLQE 359 (426)
Q Consensus 348 ~r~~Il~~~l~~ 359 (426)
++.+|++.....
T Consensus 165 ~~~~iL~~~a~~ 176 (229)
T PRK06893 165 QKIIVLQRNAYQ 176 (229)
T ss_pred HHHHHHHHHHHH
Confidence 999999987764
No 120
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.34 E-value=5.5e-11 Score=127.23 Aligned_cols=179 Identities=18% Similarity=0.279 Sum_probs=111.7
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccc-cCCCCcceEEEEecc
Q 014376 159 ESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRF-SSRYPQCQLVEVNAH 237 (426)
Q Consensus 159 ~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~-~~~~~~~~~i~i~~~ 237 (426)
+.|.+.++..+.|..++...+. |-.+ +..++|+|+||||||++++.+.+.+.... ....+...++++||.
T Consensus 755 D~LPhREeEIeeLasfL~paIk----gsgp-----nnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK----QSGS-----NQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh----cCCC-----CceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 4566666667777777655442 2112 34568999999999999999998884322 112345678999996
Q ss_pred cccccc----------ccc---hHHHHHHHHHHHHHHH-HhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHH
Q 014376 238 SLFSKW----------FSE---SGKLVAKLFQKIQEMV-EEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALL 303 (426)
Q Consensus 238 ~l~~~~----------~~e---~~~~v~~~f~~~~~~~-~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll 303 (426)
.+...+ ++. .+.....++..+.... .......||+|||||.|....+ .++-.|+
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~Q------------DVLYnLF 893 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQ------------KVLFTLF 893 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHH------------HHHHHHH
Confidence 643221 000 0111112222222222 1123456999999999975321 3334444
Q ss_pred HHhhhhcCCCcEEEEEEeCC---CCcCCHHHhcccCe-EEEeCCCCHHHHHHHHHHHHHHH
Q 014376 304 TQMDKLKSSPNVIILTTSNI---TAAIDIAFVDRADI-KAYVGPPTLQARYEILRSCLQEL 360 (426)
Q Consensus 304 ~~ld~l~~~~~viVi~TtN~---~~~ld~al~~R~~~-~i~i~~p~~~~r~~Il~~~l~~l 360 (426)
.... .....++||+.+|. +..+++.+.+|+.. .+.|++++.+++.+||+..++..
T Consensus 894 R~~~--~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A 952 (1164)
T PTZ00112 894 DWPT--KINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENC 952 (1164)
T ss_pred HHhh--ccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhC
Confidence 4322 23456888888886 44567888899865 47889999999999999998863
No 121
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=1.8e-11 Score=128.56 Aligned_cols=166 Identities=19% Similarity=0.273 Sum_probs=113.3
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccc------cCCCC--
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRF------SSRYP-- 227 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~------~~~~~-- 227 (426)
..|++++|++.+++.|.+.+.. |-- ++.+||+||+|+|||++|+++|+.+...- +..+.
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~-------~rl------~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sC 79 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILN-------NKL------THAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVC 79 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------CCC------CceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 3688999999999988877542 111 35699999999999999999999985321 11111
Q ss_pred -------cceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHH
Q 014376 228 -------QCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVN 300 (426)
Q Consensus 228 -------~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~ 300 (426)
+..++++++.+. ..-..++.+...+.... ......|++|||+|.+.. ...+
T Consensus 80 r~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P-~~~~~KVIIIDEad~Lt~---------------~A~N 137 (605)
T PRK05896 80 ESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLP-TTFKYKVYIIDEAHMLST---------------SAWN 137 (605)
T ss_pred HHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhch-hhCCcEEEEEechHhCCH---------------HHHH
Confidence 113444544221 11223455544443321 113457899999998854 3567
Q ss_pred HHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 301 ALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 301 ~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
.|+..|+. ..+.+++|.+++.+..+.+++++|+ ..+.+.+++..+....++..+.+
T Consensus 138 aLLKtLEE--Pp~~tvfIL~Tt~~~KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~k 193 (605)
T PRK05896 138 ALLKTLEE--PPKHVVFIFATTEFQKIPLTIISRC-QRYNFKKLNNSELQELLKSIAKK 193 (605)
T ss_pred HHHHHHHh--CCCcEEEEEECCChHhhhHHHHhhh-hhcccCCCCHHHHHHHHHHHHHH
Confidence 89888876 3456677666777888999999998 57899999999988888876654
No 122
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=1.6e-11 Score=126.89 Aligned_cols=166 Identities=16% Similarity=0.200 Sum_probs=111.3
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccc-------cCCCC-
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRF-------SSRYP- 227 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~-------~~~~~- 227 (426)
..|++++|++.+++.|.+.+.. |-- +..+|||||+|+|||++|+++|+.+...- +..+.
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~-------~~i------~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~ 80 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRF-------NRA------AHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS 80 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------CCC------ceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH
Confidence 4699999999999988887653 211 35699999999999999999999985421 00000
Q ss_pred --------cceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHH
Q 014376 228 --------QCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVV 299 (426)
Q Consensus 228 --------~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~ 299 (426)
+..++++++.... ....++.+-+.+.. ........|++|||+|.+.. ...
T Consensus 81 C~~i~~~~~~d~~~i~g~~~~------gid~ir~i~~~l~~-~~~~~~~kvvIIdead~lt~---------------~~~ 138 (451)
T PRK06305 81 CKEISSGTSLDVLEIDGASHR------GIEDIRQINETVLF-TPSKSRYKIYIIDEVHMLTK---------------EAF 138 (451)
T ss_pred HHHHhcCCCCceEEeeccccC------CHHHHHHHHHHHHh-hhhcCCCEEEEEecHHhhCH---------------HHH
Confidence 1123444432110 11223333222221 11224668999999998864 346
Q ss_pred HHHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 300 NALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 300 ~~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
+.|++.++. ..+.+++|.++|....+.+++++|+ ..+++.+++.++...+++..+++
T Consensus 139 n~LLk~lEe--p~~~~~~Il~t~~~~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~ 195 (451)
T PRK06305 139 NSLLKTLEE--PPQHVKFFLATTEIHKIPGTILSRC-QKMHLKRIPEETIIDKLALIAKQ 195 (451)
T ss_pred HHHHHHhhc--CCCCceEEEEeCChHhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHH
Confidence 788888876 3456666666677788889999998 67899999999888888776654
No 123
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=7.4e-11 Score=118.46 Aligned_cols=179 Identities=24% Similarity=0.364 Sum_probs=125.7
Q ss_pred hhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccc
Q 014376 161 LIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLF 240 (426)
Q Consensus 161 lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~ 240 (426)
+.+.++..+++..++.... .|..| .++++|||||||||++++.+++++.... +...++++||....
T Consensus 19 l~~Re~ei~~l~~~l~~~~----~~~~p------~n~~iyG~~GTGKT~~~~~v~~~l~~~~----~~~~~~yINc~~~~ 84 (366)
T COG1474 19 LPHREEEINQLASFLAPAL----RGERP------SNIIIYGPTGTGKTATVKFVMEELEESS----ANVEVVYINCLELR 84 (366)
T ss_pred ccccHHHHHHHHHHHHHHh----cCCCC------ccEEEECCCCCCHhHHHHHHHHHHHhhh----ccCceEEEeeeeCC
Confidence 6677777777777654322 34333 4599999999999999999999996543 22337999997764
Q ss_pred ccc------------ccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhh
Q 014376 241 SKW------------FSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK 308 (426)
Q Consensus 241 ~~~------------~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~ 308 (426)
+.+ ....+....+++....+.+.......|+++||+|.|..+.+ .++-.|+..-+.
T Consensus 85 t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~------------~~LY~L~r~~~~ 152 (366)
T COG1474 85 TPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG------------EVLYSLLRAPGE 152 (366)
T ss_pred CHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc------------hHHHHHHhhccc
Confidence 321 12223344556666666666667889999999999986431 344444444333
Q ss_pred hcCCCcEEEEEEeCCCC---cCCHHHhcccC-eEEEeCCCCHHHHHHHHHHHHHHHHHhCccc
Q 014376 309 LKSSPNVIILTTSNITA---AIDIAFVDRAD-IKAYVGPPTLQARYEILRSCLQELIRTGIIS 367 (426)
Q Consensus 309 l~~~~~viVi~TtN~~~---~ld~al~~R~~-~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~ 367 (426)
. ..++.+++.+|..+ .+|+.+.++++ ..|.|++.+.++.+.|++.+.+.....+.+.
T Consensus 153 ~--~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~ 213 (366)
T COG1474 153 N--KVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVID 213 (366)
T ss_pred c--ceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcC
Confidence 2 45678888888764 36888888874 4679999999999999999999877666553
No 124
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.32 E-value=1.6e-11 Score=126.81 Aligned_cols=166 Identities=19% Similarity=0.322 Sum_probs=117.8
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhccccc---CCCCcc---
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS---SRYPQC--- 229 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~---~~~~~~--- 229 (426)
..|++++|++.+.+.|.+.+..... ...++|.||.|+||||+||.+|+.++..-. ..+..|
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~~ri-------------~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C 79 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALENGRI-------------AHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC 79 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHhCcc-------------hhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh
Confidence 4689999999999999988754221 245999999999999999999999975431 001111
Q ss_pred ---------eEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHH
Q 014376 230 ---------QLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVN 300 (426)
Q Consensus 230 ---------~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~ 300 (426)
.++++++.+ ...-..++.+.+++.-. ....+..|.+|||++.|.. ...|
T Consensus 80 k~I~~g~~~DviEiDaAS------n~gVddiR~i~e~v~y~-P~~~ryKVyiIDEvHMLS~---------------~afN 137 (515)
T COG2812 80 KEINEGSLIDVIEIDAAS------NTGVDDIREIIEKVNYA-PSEGRYKVYIIDEVHMLSK---------------QAFN 137 (515)
T ss_pred HhhhcCCcccchhhhhhh------ccChHHHHHHHHHhccC-CccccceEEEEecHHhhhH---------------HHHH
Confidence 122222211 11223444444443321 1235678999999998876 6789
Q ss_pred HHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 301 ALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 301 ~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
+||+.++. ++..+++|.+|..++.+...+++|+ ..+.+...+.++....+...+.+
T Consensus 138 ALLKTLEE--PP~hV~FIlATTe~~Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~ 193 (515)
T COG2812 138 ALLKTLEE--PPSHVKFILATTEPQKIPNTILSRC-QRFDFKRLDLEEIAKHLAAILDK 193 (515)
T ss_pred HHhccccc--CccCeEEEEecCCcCcCchhhhhcc-ccccccCCCHHHHHHHHHHHHHh
Confidence 99999876 6678888888888999999999998 67888888888877777776654
No 125
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.31 E-value=1.1e-10 Score=110.02 Aligned_cols=126 Identities=18% Similarity=0.256 Sum_probs=84.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEE
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLI 273 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illI 273 (426)
++.++|+||+|||||+|++++++.+.. .+..++.+++.++... +.. .....+++|
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~------~~~~~~~i~~~~~~~~------------~~~-------~~~~~~lii 96 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASY------GGRNARYLDAASPLLA------------FDF-------DPEAELYAV 96 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh------CCCcEEEEehHHhHHH------------Hhh-------cccCCEEEE
Confidence 467999999999999999999998731 2345577776554211 110 124568999
Q ss_pred echhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCC---cCCHHHhccc--CeEEEeCCCCHHH
Q 014376 274 DEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITA---AIDIAFVDRA--DIKAYVGPPTLQA 348 (426)
Q Consensus 274 DEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~---~ld~al~~R~--~~~i~i~~p~~~~ 348 (426)
||++.+.. .....++..++.....+..+++++++.+. .+.+.+.+|+ +..+.+++|+.+.
T Consensus 97 Ddi~~l~~---------------~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~ 161 (227)
T PRK08903 97 DDVERLDD---------------AQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDAD 161 (227)
T ss_pred eChhhcCc---------------hHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHH
Confidence 99987643 12345666666665555544444444322 2467788898 5789999999988
Q ss_pred HHHHHHHHHHH
Q 014376 349 RYEILRSCLQE 359 (426)
Q Consensus 349 r~~Il~~~l~~ 359 (426)
+..+++.....
T Consensus 162 ~~~~l~~~~~~ 172 (227)
T PRK08903 162 KIAALKAAAAE 172 (227)
T ss_pred HHHHHHHHHHH
Confidence 88877765443
No 126
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.31 E-value=4.6e-11 Score=102.50 Aligned_cols=127 Identities=30% Similarity=0.453 Sum_probs=79.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEE
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLI 273 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illI 273 (426)
++.++|+||||+|||++++.+++.+. ..+..++.+++............ .................+.++++
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~------~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~lil 90 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELF------RPGAPFLYLNASDLLEGLVVAEL--FGHFLVRLLFELAEKAKPGVLFI 90 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh------cCCCCeEEEehhhhhhhhHHHHH--hhhhhHhHHHHhhccCCCeEEEE
Confidence 46799999999999999999999984 12345577777665432211110 00000111111112346789999
Q ss_pred echhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcC----CCcEEEEEEeCCCC--cCCHHHhcccCeEEEeCC
Q 014376 274 DEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS----SPNVIILTTSNITA--AIDIAFVDRADIKAYVGP 343 (426)
Q Consensus 274 DEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~----~~~viVi~TtN~~~--~ld~al~~R~~~~i~i~~ 343 (426)
||++.+.. .....++..+..... ..++.+++++|... .++..+.+|++..+.+++
T Consensus 91 De~~~~~~---------------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~~ 151 (151)
T cd00009 91 DEIDSLSR---------------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIPL 151 (151)
T ss_pred eChhhhhH---------------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhhccEeecCC
Confidence 99998733 223445555554433 35677777777776 678899999987777663
No 127
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.31 E-value=1.8e-11 Score=116.04 Aligned_cols=131 Identities=18% Similarity=0.193 Sum_probs=88.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEe
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLID 274 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illID 274 (426)
..++|+||+|||||+|++++++.+... +..+.+++...... ....+.+... ...+|+||
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~------~~~v~y~~~~~~~~--------~~~~~~~~~~-------~~dlliiD 104 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQR------GRAVGYVPLDKRAW--------FVPEVLEGME-------QLSLVCID 104 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC------CCeEEEEEHHHHhh--------hhHHHHHHhh-------hCCEEEEe
Confidence 469999999999999999999987521 22334444433111 1112222221 22589999
Q ss_pred chhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCc-EEEEEEeCCCCc---CCHHHhcccC--eEEEeCCCCHHH
Q 014376 275 EVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPN-VIILTTSNITAA---IDIAFVDRAD--IKAYVGPPTLQA 348 (426)
Q Consensus 275 Eid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~-viVi~TtN~~~~---ld~al~~R~~--~~i~i~~p~~~~ 348 (426)
|++.+..+. .....+++.++.....++ .+++++++.+.. +.+.+++|+. .++.+.+|+.++
T Consensus 105 di~~~~~~~-------------~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~ 171 (235)
T PRK08084 105 NIECIAGDE-------------LWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEE 171 (235)
T ss_pred ChhhhcCCH-------------HHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHH
Confidence 999885422 334556666766655555 567777777666 4789999984 899999999999
Q ss_pred HHHHHHHHHHH
Q 014376 349 RYEILRSCLQE 359 (426)
Q Consensus 349 r~~Il~~~l~~ 359 (426)
+.++++.....
T Consensus 172 ~~~~l~~~a~~ 182 (235)
T PRK08084 172 KLQALQLRARL 182 (235)
T ss_pred HHHHHHHHHHH
Confidence 99998875544
No 128
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.31 E-value=5.3e-11 Score=126.36 Aligned_cols=166 Identities=18% Similarity=0.263 Sum_probs=112.7
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhccccc-----------C
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS-----------S 224 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~-----------~ 224 (426)
..|++++|++.+++.|.+.+.. |-- ...+||+||+|+||||+|+.+|+.+..... .
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~-------gri------~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg 87 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFET-------GRI------AQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG 87 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------CCC------CceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc
Confidence 4689999999999999887642 211 256999999999999999999999864321 0
Q ss_pred CCCcc---------eEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChh
Q 014376 225 RYPQC---------QLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDS 295 (426)
Q Consensus 225 ~~~~~---------~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~ 295 (426)
.+..| .+++++..+- .....++.+.+.+.... -.....|++|||+|.+..
T Consensus 88 ~c~~C~~i~~g~h~Dv~e~~a~s~------~gvd~IReIie~~~~~P-~~a~~KVvIIDEad~Ls~-------------- 146 (598)
T PRK09111 88 VGEHCQAIMEGRHVDVLEMDAASH------TGVDDIREIIESVRYRP-VSARYKVYIIDEVHMLST-------------- 146 (598)
T ss_pred ccHHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHHhch-hcCCcEEEEEEChHhCCH--------------
Confidence 01111 2334433221 11234555555443321 124567999999998854
Q ss_pred HHHHHHHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 296 IRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 296 ~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
...|.|++.|+. ..+.+++|.+++..+.+.+.+++|+ ..+.+..++.++...+++..+++
T Consensus 147 -~a~naLLKtLEe--Pp~~~~fIl~tte~~kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~k 206 (598)
T PRK09111 147 -AAFNALLKTLEE--PPPHVKFIFATTEIRKVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAK 206 (598)
T ss_pred -HHHHHHHHHHHh--CCCCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHH
Confidence 457889988876 3345555555566666778899998 68999999999888888877654
No 129
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=2.4e-11 Score=129.98 Aligned_cols=172 Identities=24% Similarity=0.277 Sum_probs=121.6
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecc
Q 014376 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (426)
Q Consensus 158 ~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (426)
-+.++|+++..+.+.+.+ ..++.|+....-+ -..+||.||+|+|||-||++||..+. -....++.++.+
T Consensus 490 ~~rViGQd~AV~avs~aI----rraRaGL~dp~rP-igsFlF~GPTGVGKTELAkaLA~~Lf------g~e~aliR~DMS 558 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAI----RRARAGLGDPNRP-IGSFLFLGPTGVGKTELAKALAEALF------GDEQALIRIDMS 558 (786)
T ss_pred hcceeChHHHHHHHHHHH----HHHhcCCCCCCCC-ceEEEeeCCCcccHHHHHHHHHHHhc------CCCccceeechH
Confidence 356777777777666654 4455666532111 24689999999999999999999993 123456888887
Q ss_pred ccccc------------cccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHH
Q 014376 238 SLFSK------------WFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQ 305 (426)
Q Consensus 238 ~l~~~------------~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ 305 (426)
++..+ |+|..+ -+.+-+.++. +..+||++|||++..+ +++|-||..
T Consensus 559 Ey~EkHsVSrLIGaPPGYVGyee--GG~LTEaVRr-----~PySViLlDEIEKAHp---------------dV~nilLQV 616 (786)
T COG0542 559 EYMEKHSVSRLIGAPPGYVGYEE--GGQLTEAVRR-----KPYSVILLDEIEKAHP---------------DVFNLLLQV 616 (786)
T ss_pred HHHHHHHHHHHhCCCCCCceecc--ccchhHhhhc-----CCCeEEEechhhhcCH---------------HHHHHHHHH
Confidence 76532 222211 1122223333 4568999999998866 789999999
Q ss_pred hhhh---------cCCCcEEEEEEeCCCCc----------------------------CCHHHhcccCeEEEeCCCCHHH
Q 014376 306 MDKL---------KSSPNVIILTTSNITAA----------------------------IDIAFVDRADIKAYVGPPTLQA 348 (426)
Q Consensus 306 ld~l---------~~~~~viVi~TtN~~~~----------------------------ld~al~~R~~~~i~i~~p~~~~ 348 (426)
||.= ....|++||.|||.... +.|.|+.|+|.+|.|.+.+.+.
T Consensus 617 lDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~ 696 (786)
T COG0542 617 LDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEV 696 (786)
T ss_pred hcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHH
Confidence 9832 23468999999996411 2577889999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 014376 349 RYEILRSCLQELIR 362 (426)
Q Consensus 349 r~~Il~~~l~~l~~ 362 (426)
..+|+...+.++..
T Consensus 697 l~~Iv~~~L~~l~~ 710 (786)
T COG0542 697 LERIVDLQLNRLAK 710 (786)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998887654
No 130
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=8.9e-11 Score=118.57 Aligned_cols=166 Identities=19% Similarity=0.254 Sum_probs=110.3
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCC-C--CcceEE
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSR-Y--PQCQLV 232 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~-~--~~~~~i 232 (426)
..|++++|++.+++.+.+.+.. |.- +..++||||||+|||++++++++.+....... . .+..++
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~-------~~~------~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~ 80 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIEN-------NHL------AQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIF 80 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHc-------CCC------CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceE
Confidence 4689999999999888887653 211 25799999999999999999999986432110 0 011223
Q ss_pred EEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCC
Q 014376 233 EVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS 312 (426)
Q Consensus 233 ~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~ 312 (426)
+++... ......+..+++.+... .......+++|||++.+.. ..++.++..++. ..
T Consensus 81 ~l~~~~------~~~~~~i~~l~~~~~~~-p~~~~~kiviIDE~~~l~~---------------~~~~~ll~~le~--~~ 136 (367)
T PRK14970 81 ELDAAS------NNSVDDIRNLIDQVRIP-PQTGKYKIYIIDEVHMLSS---------------AAFNAFLKTLEE--PP 136 (367)
T ss_pred Eecccc------CCCHHHHHHHHHHHhhc-cccCCcEEEEEeChhhcCH---------------HHHHHHHHHHhC--CC
Confidence 333211 11224455555554321 1123457999999987754 345777777665 23
Q ss_pred CcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 313 PNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 313 ~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
..+++|.+++....+.+++.+|+ ..+.+.+|+.++...++...+.+
T Consensus 137 ~~~~~Il~~~~~~kl~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~ 182 (367)
T PRK14970 137 AHAIFILATTEKHKIIPTILSRC-QIFDFKRITIKDIKEHLAGIAVK 182 (367)
T ss_pred CceEEEEEeCCcccCCHHHHhcc-eeEecCCccHHHHHHHHHHHHHH
Confidence 45566666677788889999998 57899999999888888776654
No 131
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.29 E-value=2.8e-11 Score=126.26 Aligned_cols=166 Identities=17% Similarity=0.220 Sum_probs=110.5
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhccccc------CCC---
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS------SRY--- 226 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~------~~~--- 226 (426)
..|++++|++.+++.|...+.. |-- +..+|||||+|+|||++|+++|+.+...-. ..+
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~-------grl------~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C 77 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDN-------NRL------AHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQC 77 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHc-------CCC------CeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 4689999999999999887642 211 246799999999999999999999843211 000
Q ss_pred ------CcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHH
Q 014376 227 ------PQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVN 300 (426)
Q Consensus 227 ------~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~ 300 (426)
.+..++++++.+- .....++.+...... ........|++|||++.+.. ...+
T Consensus 78 ~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~-~P~~~~~KVvIIDEad~Lt~---------------~A~N 135 (535)
T PRK08451 78 QSALENRHIDIIEMDAASN------RGIDDIRELIEQTKY-KPSMARFKIFIIDEVHMLTK---------------EAFN 135 (535)
T ss_pred HHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhh-CcccCCeEEEEEECcccCCH---------------HHHH
Confidence 1112344433221 012233333332211 11123457999999988864 5678
Q ss_pred HHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 301 ALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 301 ~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
+|+..|+.. ++.+.+|.+++.+..+.+++++|+ ..+++.+++.++....++..+++
T Consensus 136 ALLK~LEEp--p~~t~FIL~ttd~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~ 191 (535)
T PRK08451 136 ALLKTLEEP--PSYVKFILATTDPLKLPATILSRT-QHFRFKQIPQNSIISHLKTILEK 191 (535)
T ss_pred HHHHHHhhc--CCceEEEEEECChhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHH
Confidence 899998874 345555555566788889999997 68899999998888877766654
No 132
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.29 E-value=4.7e-11 Score=132.13 Aligned_cols=173 Identities=23% Similarity=0.306 Sum_probs=115.6
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCC-cEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEec
Q 014376 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWN-RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (426)
Q Consensus 158 ~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~-~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (426)
=+.++|++.+.+.+...+... ..|+... ..+ ..++|+||+|+|||++|++||+.+-. ....++.++.
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~----~~gl~~~--~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~------~~~~~~~~d~ 575 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRA----RVGLKNP--NRPIASFLFSGPTGVGKTELTKALASYFFG------SEDAMIRLDM 575 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHH----hhcccCC--CCCceEEEEECCCCCcHHHHHHHHHHHhcC------CccceEEEEc
Confidence 456888888888887776532 2333210 111 35899999999999999999998721 1234567776
Q ss_pred cccccc-----cccch----HH-HHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHh
Q 014376 237 HSLFSK-----WFSES----GK-LVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQM 306 (426)
Q Consensus 237 ~~l~~~-----~~~e~----~~-~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l 306 (426)
+++... .++.. +. ....+...++. ...+|++|||+|++.+ .+.+.|+..|
T Consensus 576 s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~-----~p~~VvllDeieka~~---------------~v~~~Llq~l 635 (821)
T CHL00095 576 SEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRK-----KPYTVVLFDEIEKAHP---------------DIFNLLLQIL 635 (821)
T ss_pred hhccccccHHHhcCCCCcccCcCccchHHHHHHh-----CCCeEEEECChhhCCH---------------HHHHHHHHHh
Confidence 554321 11111 00 01123333332 3458999999998755 5778888888
Q ss_pred hhhc---------CCCcEEEEEEeCCCCc-------------------------------------CCHHHhcccCeEEE
Q 014376 307 DKLK---------SSPNVIILTTSNITAA-------------------------------------IDIAFVDRADIKAY 340 (426)
Q Consensus 307 d~l~---------~~~~viVi~TtN~~~~-------------------------------------ld~al~~R~~~~i~ 340 (426)
+.-. ...+++||+|||.... +.|.|++|+|.++.
T Consensus 636 e~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~ 715 (821)
T CHL00095 636 DDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIV 715 (821)
T ss_pred ccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEE
Confidence 7421 2468999999996421 23578899999999
Q ss_pred eCCCCHHHHHHHHHHHHHHHHH
Q 014376 341 VGPPTLQARYEILRSCLQELIR 362 (426)
Q Consensus 341 i~~p~~~~r~~Il~~~l~~l~~ 362 (426)
|.+++.++..+|++..+.++..
T Consensus 716 F~pL~~~~l~~Iv~~~l~~l~~ 737 (821)
T CHL00095 716 FRQLTKNDVWEIAEIMLKNLFK 737 (821)
T ss_pred eCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999998887643
No 133
>PHA02244 ATPase-like protein
Probab=99.29 E-value=7.2e-11 Score=117.01 Aligned_cols=126 Identities=20% Similarity=0.275 Sum_probs=79.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecc----ccccccccchHHHHHHHHHHHHHHHHhccCcEE
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH----SLFSKWFSESGKLVAKLFQKIQEMVEEENNLVF 270 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~----~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~i 270 (426)
..++|+||||||||++|+++|+.++.++ +.++.. .+.. +....+.....-|-.+ .....+
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pf---------v~In~l~d~~~L~G-~i~~~g~~~dgpLl~A------~~~Ggv 183 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDF---------YFMNAIMDEFELKG-FIDANGKFHETPFYEA------FKKGGL 183 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCE---------EEEecChHHHhhcc-cccccccccchHHHHH------hhcCCE
Confidence 3499999999999999999999998766 555532 1110 1111111000011111 135689
Q ss_pred EEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhh---------hhcCCCcEEEEEEeCCC-----------CcCCHH
Q 014376 271 VLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMD---------KLKSSPNVIILTTSNIT-----------AAIDIA 330 (426)
Q Consensus 271 llIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld---------~l~~~~~viVi~TtN~~-----------~~ld~a 330 (426)
++|||++.+.... ...|...++ .+..++++.+|+|+|.. ..++.+
T Consensus 184 LiLDEId~a~p~v---------------q~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~A 248 (383)
T PHA02244 184 FFIDEIDASIPEA---------------LIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGA 248 (383)
T ss_pred EEEeCcCcCCHHH---------------HHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHH
Confidence 9999999776532 223333332 22345789999999983 457999
Q ss_pred HhcccCeEEEeCCCCHHHHHHHH
Q 014376 331 FVDRADIKAYVGPPTLQARYEIL 353 (426)
Q Consensus 331 l~~R~~~~i~i~~p~~~~r~~Il 353 (426)
+++|| ..+++++|+ +....|.
T Consensus 249 llDRF-v~I~~dyp~-~~E~~i~ 269 (383)
T PHA02244 249 TLDRF-APIEFDYDE-KIEHLIS 269 (383)
T ss_pred HHhhc-EEeeCCCCc-HHHHHHh
Confidence 99999 679999998 3334444
No 134
>PRK08727 hypothetical protein; Validated
Probab=99.29 E-value=2.5e-11 Score=114.94 Aligned_cols=131 Identities=21% Similarity=0.219 Sum_probs=89.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEe
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLID 274 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illID 274 (426)
..++|+||+|||||+|++++++.+... +...++++..++. ..+...++.. ....+|+||
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~------~~~~~y~~~~~~~--------~~~~~~~~~l-------~~~dlLiID 100 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQA------GRSSAYLPLQAAA--------GRLRDALEAL-------EGRSLVALD 100 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc------CCcEEEEeHHHhh--------hhHHHHHHHH-------hcCCEEEEe
Confidence 349999999999999999999887421 1233455433321 1122222222 244699999
Q ss_pred chhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCcC---CHHHhccc--CeEEEeCCCCHHHH
Q 014376 275 EVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAI---DIAFVDRA--DIKAYVGPPTLQAR 349 (426)
Q Consensus 275 Eid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~l---d~al~~R~--~~~i~i~~p~~~~r 349 (426)
|++.+.... .....+++.++..+..+..+|+++.+.+..+ ++++++|+ +..+.+++|+.+++
T Consensus 101 Di~~l~~~~-------------~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~ 167 (233)
T PRK08727 101 GLESIAGQR-------------EDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVAR 167 (233)
T ss_pred CcccccCCh-------------HHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHH
Confidence 999775422 1234566667766655556777776677665 78999996 67889999999999
Q ss_pred HHHHHHHHHH
Q 014376 350 YEILRSCLQE 359 (426)
Q Consensus 350 ~~Il~~~l~~ 359 (426)
.++++.....
T Consensus 168 ~~iL~~~a~~ 177 (233)
T PRK08727 168 AAVLRERAQR 177 (233)
T ss_pred HHHHHHHHHH
Confidence 9999986654
No 135
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.29 E-value=1.2e-11 Score=123.04 Aligned_cols=137 Identities=29% Similarity=0.439 Sum_probs=89.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccccc--ccccchHHHH----HHHHHHHHHHHHhccC
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFS--KWFSESGKLV----AKLFQKIQEMVEEENN 267 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~--~~~~e~~~~v----~~~f~~~~~~~~~~~~ 267 (426)
+++++|-||||+|||++++.+|+.++.++ +.+.++.-.. ..+|...-.. ...|.....-+-....
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~---------~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~ 113 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPF---------VRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR 113 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCe---------EEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc
Confidence 57799999999999999999999998665 7777764331 1111111000 0000000000000001
Q ss_pred cEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhh----------hcCCCcEEEEEEeC-----CCCcCCHHHh
Q 014376 268 LVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK----------LKSSPNVIILTTSN-----ITAAIDIAFV 332 (426)
Q Consensus 268 ~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~----------l~~~~~viVi~TtN-----~~~~ld~al~ 332 (426)
+++++|||+...+ .+++.|+..|+. ++-...++|++|+| ....+..+++
T Consensus 114 -~ill~DEInra~p---------------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~l 177 (329)
T COG0714 114 -VILLLDEINRAPP---------------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALL 177 (329)
T ss_pred -eEEEEeccccCCH---------------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHH
Confidence 4999999987765 577888888885 44456799999999 4455799999
Q ss_pred cccCeEEEeCCCCHHH-HHHHHHH
Q 014376 333 DRADIKAYVGPPTLQA-RYEILRS 355 (426)
Q Consensus 333 ~R~~~~i~i~~p~~~~-r~~Il~~ 355 (426)
+||-..+++++|+.++ ...++..
T Consensus 178 dRf~~~~~v~yp~~~~e~~~i~~~ 201 (329)
T COG0714 178 DRFLLRIYVDYPDSEEEERIILAR 201 (329)
T ss_pred hhEEEEEecCCCCchHHHHHHHHh
Confidence 9999999999995544 4444433
No 136
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=6.4e-11 Score=126.45 Aligned_cols=166 Identities=21% Similarity=0.294 Sum_probs=110.7
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccC--------CCC
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSS--------RYP 227 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~--------~~~ 227 (426)
..|++++|++.+++.|..++... .+ ...+||+||+|+|||++|+++|+.+...... .+.
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~------rl-------~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~ 79 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISN------RI-------APAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCE 79 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcC------CC-------CceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccH
Confidence 56899999999999998876531 11 2469999999999999999999999653110 000
Q ss_pred ---------cceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHH
Q 014376 228 ---------QCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRV 298 (426)
Q Consensus 228 ---------~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~ 298 (426)
+..+++++... ......++.+...+... .......|++|||+|.|.. ..
T Consensus 80 ~C~~i~~g~h~D~~ei~~~~------~~~vd~IReii~~a~~~-p~~~~~KViIIDEad~Lt~---------------~a 137 (620)
T PRK14948 80 LCRAIAAGNALDVIEIDAAS------NTGVDNIRELIERAQFA-PVQARWKVYVIDECHMLST---------------AA 137 (620)
T ss_pred HHHHHhcCCCccEEEEeccc------cCCHHHHHHHHHHHhhC-hhcCCceEEEEECccccCH---------------HH
Confidence 01233333211 12223455555444321 1123557999999998854 45
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 299 VNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 299 ~~~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
.+.|+..|+. ....+++|.+++.+..+-+.+++|+ ..+.|..++.++....++..+++
T Consensus 138 ~naLLK~LEe--Pp~~tvfIL~t~~~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~k 195 (620)
T PRK14948 138 FNALLKTLEE--PPPRVVFVLATTDPQRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEK 195 (620)
T ss_pred HHHHHHHHhc--CCcCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHH
Confidence 6889998885 3456666666677777888999998 67888888887776666655443
No 137
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=8.4e-11 Score=122.38 Aligned_cols=166 Identities=20% Similarity=0.255 Sum_probs=109.8
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhccccc------CCCC--
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS------SRYP-- 227 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~------~~~~-- 227 (426)
..|++++|++.+.+.|.+.+.. +-- ...+||+||+|+||||+|+.+|+.++..-. ..+.
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~-------~~i------~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc 79 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKL-------QRV------SHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENC 79 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHc-------CCC------CeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHH
Confidence 4688999999999988877643 111 245899999999999999999999863110 0000
Q ss_pred -------cceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHH
Q 014376 228 -------QCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVN 300 (426)
Q Consensus 228 -------~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~ 300 (426)
...++++++.+- .....++.+.+.+... .......|++|||++.+.. ...+
T Consensus 80 ~~i~~g~~~d~~eidaas~------~gvd~ir~I~~~~~~~-P~~~~~KVvIIDEad~Lt~---------------~a~n 137 (486)
T PRK14953 80 VEIDKGSFPDLIEIDAASN------RGIDDIRALRDAVSYT-PIKGKYKVYIIDEAHMLTK---------------EAFN 137 (486)
T ss_pred HHHhcCCCCcEEEEeCccC------CCHHHHHHHHHHHHhC-cccCCeeEEEEEChhhcCH---------------HHHH
Confidence 112344443221 1122344444333321 1224568999999998754 3467
Q ss_pred HHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 301 ALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 301 ~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
+|+..++.. ++.+++|.+++..+.+.+++.+|+ ..+.+.+++..+...+++..++.
T Consensus 138 aLLk~LEep--p~~~v~Il~tt~~~kl~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k~ 193 (486)
T PRK14953 138 ALLKTLEEP--PPRTIFILCTTEYDKIPPTILSRC-QRFIFSKPTKEQIKEYLKRICNE 193 (486)
T ss_pred HHHHHHhcC--CCCeEEEEEECCHHHHHHHHHHhc-eEEEcCCCCHHHHHHHHHHHHHH
Confidence 888887763 334555555566677888899998 57899999999999888887765
No 138
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=2.4e-11 Score=128.40 Aligned_cols=166 Identities=21% Similarity=0.270 Sum_probs=112.0
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhccccc------CCCC--
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS------SRYP-- 227 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~------~~~~-- 227 (426)
..|++++|++.+++.|...+.. |-- +..+||+||+|+|||++|+++|+.+..... ..++
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~-------~~i------~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C 79 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIES-------NKI------ANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSC 79 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHc-------CCC------CeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHH
Confidence 4699999999999999888753 111 356999999999999999999999964310 0011
Q ss_pred -------cceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHH
Q 014376 228 -------QCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVN 300 (426)
Q Consensus 228 -------~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~ 300 (426)
+-.++++++.+ ......++.+...+.... ......+++|||++.+.. ...+
T Consensus 80 ~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p-~~~~~KVvIIDEa~~Ls~---------------~a~n 137 (563)
T PRK06647 80 KSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPP-ASSRYRVYIIDEVHMLSN---------------SAFN 137 (563)
T ss_pred HHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhch-hcCCCEEEEEEChhhcCH---------------HHHH
Confidence 11233333321 011233444443333211 124567999999998854 4578
Q ss_pred HHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 301 ALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 301 ~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
.|+..++. ..+.+++|.+++.+..+.+++++|+ ..+.+.+++.++..++++..+..
T Consensus 138 aLLK~LEe--pp~~~vfI~~tte~~kL~~tI~SRc-~~~~f~~l~~~el~~~L~~i~~~ 193 (563)
T PRK06647 138 ALLKTIEE--PPPYIVFIFATTEVHKLPATIKSRC-QHFNFRLLSLEKIYNMLKKVCLE 193 (563)
T ss_pred HHHHhhcc--CCCCEEEEEecCChHHhHHHHHHhc-eEEEecCCCHHHHHHHHHHHHHH
Confidence 88888875 4456666666676788889999998 47889999998888888766543
No 139
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=3.8e-11 Score=127.68 Aligned_cols=166 Identities=16% Similarity=0.222 Sum_probs=107.8
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhccccc------------
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS------------ 223 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~------------ 223 (426)
..|++++|++.+++.|.+.+.. |-- ...+||+||+|+||||+|+.+|+.+...-.
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~-------~ri------~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~ 79 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRM-------DRV------GHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE 79 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------CCC------CeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC
Confidence 4689999999999988876542 211 246999999999999999999999965210
Q ss_pred --CCCCcc---------eEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCC
Q 014376 224 --SRYPQC---------QLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEP 292 (426)
Q Consensus 224 --~~~~~~---------~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~ 292 (426)
+.++.| .++++++.+. .....++.+.+.+... .......|++|||+|.+..
T Consensus 80 ~Cg~C~sC~~~~~g~~~n~~~~d~~s~------~~vd~Ir~l~e~~~~~-P~~~~~KVvIIdEad~Lt~----------- 141 (620)
T PRK14954 80 PCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRQLRENVRYG-PQKGRYRVYIIDEVHMLST----------- 141 (620)
T ss_pred CCccCHHHHHHhccCCCCeEEeccccc------CCHHHHHHHHHHHHhh-hhcCCCEEEEEeChhhcCH-----------
Confidence 011111 2233322111 1123344443333211 1124567999999998854
Q ss_pred ChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 293 SDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 293 ~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
...+.|+..|+.. .+.+++|.+++....+-+++.+|+ ..+.+.+++.++....++..+.+
T Consensus 142 ----~a~naLLK~LEeP--p~~tv~IL~t~~~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~ 201 (620)
T PRK14954 142 ----AAFNAFLKTLEEP--PPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLDEIQSQLQMICRA 201 (620)
T ss_pred ----HHHHHHHHHHhCC--CCCeEEEEEeCChhhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHH
Confidence 3467888888763 334555444556677888899998 78999999998887777765543
No 140
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.27 E-value=5.7e-11 Score=121.57 Aligned_cols=217 Identities=16% Similarity=0.156 Sum_probs=113.7
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccc
Q 014376 159 ESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (426)
Q Consensus 159 ~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (426)
..++|.+++.+.+...+.. +.++||.||||||||++|+++++..+... .+..+.+..
T Consensus 20 ~~i~gre~vI~lll~aala----------------g~hVLL~GpPGTGKT~LAraLa~~~~~~~-------~F~~~~~~f 76 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALS----------------GESVFLLGPPGIAKSLIARRLKFAFQNAR-------AFEYLMTRF 76 (498)
T ss_pred hhccCcHHHHHHHHHHHcc----------------CCCEEEECCCChhHHHHHHHHHHHhcccC-------cceeeeeee
Confidence 4466666666655544321 56799999999999999999999874310 111111110
Q ss_pred -cccccccch-HHHH--HHHHHHHH-HHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc---
Q 014376 239 -LFSKWFSES-GKLV--AKLFQKIQ-EMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK--- 310 (426)
Q Consensus 239 -l~~~~~~e~-~~~v--~~~f~~~~-~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~--- 310 (426)
.-...+|.. .... ..-|.... ..+ ....++|+|||..+.. ..++.|+..|+.-.
T Consensus 77 ttp~DLfG~l~i~~~~~~g~f~r~~~G~L---~~A~lLfLDEI~rasp---------------~~QsaLLeam~Er~~t~ 138 (498)
T PRK13531 77 STPEEVFGPLSIQALKDEGRYQRLTSGYL---PEAEIVFLDEIWKAGP---------------AILNTLLTAINERRFRN 138 (498)
T ss_pred cCcHHhcCcHHHhhhhhcCchhhhcCCcc---ccccEEeecccccCCH---------------HHHHHHHHHHHhCeEec
Confidence 001112211 0000 01111100 000 0123899999986655 56788888884321
Q ss_pred -----C-CCcEEEEEEeCCCC---cCCHHHhcccCeEEEeCCCCH-HHHHHHHHHHHHHHHHhCccccCCCCCCCchhhH
Q 014376 311 -----S-SPNVIILTTSNITA---AIDIAFVDRADIKAYVGPPTL-QARYEILRSCLQELIRTGIISNFQDCDQSMLPNF 380 (426)
Q Consensus 311 -----~-~~~viVi~TtN~~~---~ld~al~~R~~~~i~i~~p~~-~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l 380 (426)
. +..+++++| |... ...+++.+||-..+.+|+|+. ++..+++....... ...+.. .......++
T Consensus 139 g~~~~~lp~rfiv~AT-N~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~--~~~~~~---~~vis~eel 212 (498)
T PRK13531 139 GAHEEKIPMRLLVTAS-NELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDEN--DNPVPA---SLQITDEEY 212 (498)
T ss_pred CCeEEeCCCcEEEEEC-CCCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccc--cCCCcc---cCCCCHHHH
Confidence 1 123445554 6432 234689999988999999974 55577776532110 000100 001112222
Q ss_pred HHH---hhccC-ch-------HHHHh--------hhhHHHHHHHHHHHHHcccCCCcceee
Q 014376 381 SIL---KEKLS-NP-------DIQEA--------DRSQHFYKQLLEAAEACEVRNKMFHLI 422 (426)
Q Consensus 381 ~~~---~~~~s-~~-------di~~~--------~~~~~~~~~L~~~a~~~~glsgr~~~~ 422 (426)
..+ ..... +. ++.+. ..+.+...++..++++++-++||.+.+
T Consensus 213 ~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~ 273 (498)
T PRK13531 213 QQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIA 273 (498)
T ss_pred HHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCC
Confidence 211 11111 11 11111 023467778999999999999999764
No 141
>PRK05642 DNA replication initiation factor; Validated
Probab=99.27 E-value=2.8e-11 Score=114.67 Aligned_cols=131 Identities=16% Similarity=0.257 Sum_probs=93.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEe
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLID 274 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illID 274 (426)
..++|+||+|+|||+|++++++.+... +..+++++..++... ...+.+... ...+|+||
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~------~~~v~y~~~~~~~~~--------~~~~~~~~~-------~~d~LiiD 104 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR------GEPAVYLPLAELLDR--------GPELLDNLE-------QYELVCLD 104 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC------CCcEEEeeHHHHHhh--------hHHHHHhhh-------hCCEEEEe
Confidence 568999999999999999999876321 234577777665431 112222222 22589999
Q ss_pred chhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCcC---CHHHhccc--CeEEEeCCCCHHHH
Q 014376 275 EVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAI---DIAFVDRA--DIKAYVGPPTLQAR 349 (426)
Q Consensus 275 Eid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~l---d~al~~R~--~~~i~i~~p~~~~r 349 (426)
+++.+..+. .....|++.++.+...+..+|++++..+..+ .+.+++|+ +..+.+.+|+.+++
T Consensus 105 Di~~~~~~~-------------~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~ 171 (234)
T PRK05642 105 DLDVIAGKA-------------DWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDK 171 (234)
T ss_pred chhhhcCCh-------------HHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHH
Confidence 999774322 3345688888888777788888877666544 68899998 57888999999999
Q ss_pred HHHHHHHHHH
Q 014376 350 YEILRSCLQE 359 (426)
Q Consensus 350 ~~Il~~~l~~ 359 (426)
.++++.....
T Consensus 172 ~~il~~ka~~ 181 (234)
T PRK05642 172 LRALQLRASR 181 (234)
T ss_pred HHHHHHHHHH
Confidence 9999865543
No 142
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=2.4e-11 Score=123.86 Aligned_cols=166 Identities=16% Similarity=0.211 Sum_probs=106.1
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhccccc------------
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS------------ 223 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~------------ 223 (426)
..|++++|++.+++.|.+.+.. |-- +..+||+||+|+||||+|+++|+.+.....
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~-------~~~------~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~ 79 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRM-------GRV------GHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTE 79 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHh-------CCc------ceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCC
Confidence 4689999999999988877652 211 245999999999999999999999964210
Q ss_pred --CCCCc---------ceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCC
Q 014376 224 --SRYPQ---------CQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEP 292 (426)
Q Consensus 224 --~~~~~---------~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~ 292 (426)
+.++. ..++++++... .....++.+.+.+... .......+++|||++.+..
T Consensus 80 ~c~~c~~c~~~~~~~~~n~~~~~~~~~------~~id~Ir~l~~~~~~~-p~~~~~kvvIIdea~~l~~----------- 141 (397)
T PRK14955 80 PCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRLLRENVRYG-PQKGRYRVYIIDEVHMLSI----------- 141 (397)
T ss_pred CCCCCHHHHHHhcCCCCCeEeeccccc------CCHHHHHHHHHHHhhc-hhcCCeEEEEEeChhhCCH-----------
Confidence 00000 12233332111 1123334333333211 1123557999999998864
Q ss_pred ChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 293 SDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 293 ~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
...+.|+..++. ..+.+++|.+++....+-+++.+|+ ..+.+.+++.++....++..++.
T Consensus 142 ----~~~~~LLk~LEe--p~~~t~~Il~t~~~~kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~~ 201 (397)
T PRK14955 142 ----AAFNAFLKTLEE--PPPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLEEIQQQLQGICEA 201 (397)
T ss_pred ----HHHHHHHHHHhc--CCCCeEEEEEeCChHHhHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHH
Confidence 345678877764 3345555555555677778889998 47889999988888777776653
No 143
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=1.5e-10 Score=123.48 Aligned_cols=166 Identities=20% Similarity=0.271 Sum_probs=108.6
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccC----CCC----
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSS----RYP---- 227 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~----~~~---- 227 (426)
..|++++|++.+++.|...+... .+ +..+||+||+|+|||++++.+|+.+...... .+.
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~~------~i-------~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~ 79 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAEG------RV-------AHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEM 79 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhC------CC-------ceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHH
Confidence 46899999999999988776531 11 3568999999999999999999998642210 000
Q ss_pred --------cceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHH
Q 014376 228 --------QCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVV 299 (426)
Q Consensus 228 --------~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~ 299 (426)
+..++++++... .....++.+.+.+... .......|++|||+|.+.. ...
T Consensus 80 c~~i~~~~~~d~~~i~~~~~------~~vd~ir~ii~~~~~~-p~~~~~kVvIIDEa~~L~~---------------~a~ 137 (585)
T PRK14950 80 CRAIAEGSAVDVIEMDAASH------TSVDDAREIIERVQFR-PALARYKVYIIDEVHMLST---------------AAF 137 (585)
T ss_pred HHHHhcCCCCeEEEEecccc------CCHHHHHHHHHHHhhC-cccCCeEEEEEeChHhCCH---------------HHH
Confidence 112344443211 1122333333332211 1123567999999998854 356
Q ss_pred HHHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 300 NALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 300 ~~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
+.|++.|+.. ...+++|.+++..+.+.+.+++|+ ..+.|..++..+...+++..+.+
T Consensus 138 naLLk~LEep--p~~tv~Il~t~~~~kll~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~ 194 (585)
T PRK14950 138 NALLKTLEEP--PPHAIFILATTEVHKVPATILSRC-QRFDFHRHSVADMAAHLRKIAAA 194 (585)
T ss_pred HHHHHHHhcC--CCCeEEEEEeCChhhhhHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHH
Confidence 7888887763 345666666666677778889998 56889999998888777766544
No 144
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.25 E-value=1.2e-10 Score=129.21 Aligned_cols=175 Identities=23% Similarity=0.259 Sum_probs=116.8
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEe
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVN 235 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~ 235 (426)
.+...++|++.+.+.+.+.+... ..|+... -.....++|+||+|||||++|++||+.+.. ....++.++
T Consensus 562 ~l~~~v~GQ~~av~~v~~~i~~~----~~gl~~~-~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~------~~~~~i~~d 630 (852)
T TIGR03346 562 VLHERVVGQDEAVEAVSDAIRRS----RAGLSDP-NRPIGSFLFLGPTGVGKTELAKALAEFLFD------DEDAMVRID 630 (852)
T ss_pred HhhcccCCChHHHHHHHHHHHHH----hccCCCC-CCCCeEEEEEcCCCCCHHHHHHHHHHHhcC------CCCcEEEEe
Confidence 35677899998888888776542 2332210 011346899999999999999999998731 124567777
Q ss_pred cccccccc-----ccchHHH-----HHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHH
Q 014376 236 AHSLFSKW-----FSESGKL-----VAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQ 305 (426)
Q Consensus 236 ~~~l~~~~-----~~e~~~~-----v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ 305 (426)
++.+.... +|..... ...+...++. ...++|+|||++.+.+ .+.+.|+..
T Consensus 631 ~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~-----~p~~vlllDeieka~~---------------~v~~~Ll~~ 690 (852)
T TIGR03346 631 MSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRR-----KPYSVVLFDEVEKAHP---------------DVFNVLLQV 690 (852)
T ss_pred chhhcccchHHHhcCCCCCccCcccccHHHHHHHc-----CCCcEEEEeccccCCH---------------HHHHHHHHH
Confidence 76543221 1111000 1122222222 3457999999997754 567888888
Q ss_pred hhhh---------cCCCcEEEEEEeCCCCc-------------------------CCHHHhcccCeEEEeCCCCHHHHHH
Q 014376 306 MDKL---------KSSPNVIILTTSNITAA-------------------------IDIAFVDRADIKAYVGPPTLQARYE 351 (426)
Q Consensus 306 ld~l---------~~~~~viVi~TtN~~~~-------------------------ld~al~~R~~~~i~i~~p~~~~r~~ 351 (426)
|+.- ....+++||+|||.... +.+.|+.|++.++.+.+++.+...+
T Consensus 691 l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~ 770 (852)
T TIGR03346 691 LDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIAR 770 (852)
T ss_pred HhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHH
Confidence 7632 12367889999998321 3567889999999999999999999
Q ss_pred HHHHHHHHHH
Q 014376 352 ILRSCLQELI 361 (426)
Q Consensus 352 Il~~~l~~l~ 361 (426)
|+...+..+.
T Consensus 771 I~~l~L~~l~ 780 (852)
T TIGR03346 771 IVEIQLGRLR 780 (852)
T ss_pred HHHHHHHHHH
Confidence 9998887654
No 145
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.24 E-value=1.1e-10 Score=128.92 Aligned_cols=170 Identities=25% Similarity=0.263 Sum_probs=113.6
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCc-EEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEec
Q 014376 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNR-IVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (426)
Q Consensus 158 ~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~-~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (426)
=+.++|+++..+.+.+.+... ..|+... ..+. .++|+||+|+|||.+|+++|..+-. ....++.++.
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~----~~gl~~~--~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~------~~~~~~~~dm 632 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTA----RAGLEDP--RKPLGVFLLVGPSGVGKTETALALAELLYG------GEQNLITINM 632 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHH----hcCCCCC--CCCceEEEEECCCCCCHHHHHHHHHHHHhC------CCcceEEEeH
Confidence 356788888888877776542 2343211 1223 5899999999999999999999821 1234577776
Q ss_pred cccccc------------cccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHH
Q 014376 237 HSLFSK------------WFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLT 304 (426)
Q Consensus 237 ~~l~~~------------~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~ 304 (426)
+++... |+|.... +.+...++. ...+||+|||++++.+ .+.+.|+.
T Consensus 633 se~~~~~~~~~l~g~~~gyvg~~~~--g~L~~~v~~-----~p~svvllDEieka~~---------------~v~~~Llq 690 (852)
T TIGR03345 633 SEFQEAHTVSRLKGSPPGYVGYGEG--GVLTEAVRR-----KPYSVVLLDEVEKAHP---------------DVLELFYQ 690 (852)
T ss_pred HHhhhhhhhccccCCCCCccccccc--chHHHHHHh-----CCCcEEEEechhhcCH---------------HHHHHHHH
Confidence 554211 2221110 112222222 4668999999986654 56777888
Q ss_pred Hhhhhc---------CCCcEEEEEEeCCCC-----------------------------cCCHHHhcccCeEEEeCCCCH
Q 014376 305 QMDKLK---------SSPNVIILTTSNITA-----------------------------AIDIAFVDRADIKAYVGPPTL 346 (426)
Q Consensus 305 ~ld~l~---------~~~~viVi~TtN~~~-----------------------------~ld~al~~R~~~~i~i~~p~~ 346 (426)
.++.-. ...+++||.|||... .+.++|++|++ ++.|.+++.
T Consensus 691 ~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~ 769 (852)
T TIGR03345 691 VFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDD 769 (852)
T ss_pred HhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCH
Confidence 887432 236789999999621 14578889997 789999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 014376 347 QARYEILRSCLQELIR 362 (426)
Q Consensus 347 ~~r~~Il~~~l~~l~~ 362 (426)
++..+|+...+.++..
T Consensus 770 e~l~~Iv~~~L~~l~~ 785 (852)
T TIGR03345 770 DVLAAIVRLKLDRIAR 785 (852)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987643
No 146
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.23 E-value=1.4e-10 Score=128.57 Aligned_cols=175 Identities=24% Similarity=0.306 Sum_probs=114.4
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCC-cEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEE
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWN-RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEV 234 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~-~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i 234 (426)
.+.+.++|++.+.+.+...+.... .|.... ..+ ..++|+||+|||||++|++||+.+.. ....++.+
T Consensus 565 ~l~~~viGQ~~ai~~l~~~i~~~~----~gl~~~--~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~------~~~~~i~i 632 (857)
T PRK10865 565 ELHHRVIGQNEAVEAVSNAIRRSR----AGLSDP--NRPIGSFLFLGPTGVGKTELCKALANFMFD------SDDAMVRI 632 (857)
T ss_pred HhCCeEeCCHHHHHHHHHHHHHHH----hcccCC--CCCCceEEEECCCCCCHHHHHHHHHHHhhc------CCCcEEEE
Confidence 345568888888888777765422 222110 001 35899999999999999999998731 22346778
Q ss_pred ecccccccc-----ccch----HHH-HHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHH
Q 014376 235 NAHSLFSKW-----FSES----GKL-VAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLT 304 (426)
Q Consensus 235 ~~~~l~~~~-----~~e~----~~~-v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~ 304 (426)
++..+.... +|.. +.. ...+....+. ....+|+|||++.+.. .+.+.|+.
T Consensus 633 d~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~-----~p~~vLllDEieka~~---------------~v~~~Ll~ 692 (857)
T PRK10865 633 DMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRR-----RPYSVILLDEVEKAHP---------------DVFNILLQ 692 (857)
T ss_pred EhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHh-----CCCCeEEEeehhhCCH---------------HHHHHHHH
Confidence 776653211 1110 000 0111111111 3448999999987754 56777888
Q ss_pred Hhhhh---------cCCCcEEEEEEeCCCC-------------------------cCCHHHhcccCeEEEeCCCCHHHHH
Q 014376 305 QMDKL---------KSSPNVIILTTSNITA-------------------------AIDIAFVDRADIKAYVGPPTLQARY 350 (426)
Q Consensus 305 ~ld~l---------~~~~~viVi~TtN~~~-------------------------~ld~al~~R~~~~i~i~~p~~~~r~ 350 (426)
.++.- ....+++||+|||... .+.++|++|++.++.+.+++.+...
T Consensus 693 ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~ 772 (857)
T PRK10865 693 VLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIA 772 (857)
T ss_pred HHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHH
Confidence 77632 1235678899999731 1457899999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 014376 351 EILRSCLQELIR 362 (426)
Q Consensus 351 ~Il~~~l~~l~~ 362 (426)
+|++.++.++..
T Consensus 773 ~Iv~~~L~~l~~ 784 (857)
T PRK10865 773 SIAQIQLQRLYK 784 (857)
T ss_pred HHHHHHHHHHHH
Confidence 999999988643
No 147
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.23 E-value=4.7e-10 Score=110.65 Aligned_cols=168 Identities=15% Similarity=0.133 Sum_probs=108.5
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccc-cCCCCcce-----
Q 014376 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRF-SSRYPQCQ----- 230 (426)
Q Consensus 157 ~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~-~~~~~~~~----- 230 (426)
.|++++|++.+++.|.+.+... .+ +..+||+||+|+||+++|+++|+.+-..- ++....+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------rl-------~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~ 68 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------RI-------APAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGN 68 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------CC-------CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCC
Confidence 5899999999999999886531 12 24699999999999999999999984321 11111111
Q ss_pred ---EEEEeccccc-cc-----cccch-----------HHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCC
Q 014376 231 ---LVEVNAHSLF-SK-----WFSES-----------GKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGS 290 (426)
Q Consensus 231 ---~i~i~~~~l~-~~-----~~~e~-----------~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~ 290 (426)
+..+...... ++ ..... -..++.+.+.+... .......|++||++|.+..
T Consensus 69 hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~-p~~~~~kVvII~~ae~m~~--------- 138 (314)
T PRK07399 69 HPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRP-PLEAPRKVVVIEDAETMNE--------- 138 (314)
T ss_pred CCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccC-cccCCceEEEEEchhhcCH---------
Confidence 1111111000 00 00000 01223332222111 1124568999999998865
Q ss_pred CCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHH
Q 014376 291 EPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCL 357 (426)
Q Consensus 291 e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l 357 (426)
...|+||+.|+.. . ++++|..++.++.+-+++++|+ ..+.+++++.++..++++...
T Consensus 139 ------~aaNaLLK~LEEP--p-~~~fILi~~~~~~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 139 ------AAANALLKTLEEP--G-NGTLILIAPSPESLLPTIVSRC-QIIPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred ------HHHHHHHHHHhCC--C-CCeEEEEECChHhCcHHHHhhc-eEEecCCCCHHHHHHHHHHhh
Confidence 4678999998873 2 4455666677888999999998 789999999999988888653
No 148
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.23 E-value=2.5e-10 Score=112.55 Aligned_cols=162 Identities=21% Similarity=0.255 Sum_probs=103.5
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEe
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVN 235 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~ 235 (426)
..|+++++.+++++.|..++.. +-. .+++|+||||+|||++++++++.+.... ....+++++
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~-------~~~-------~~~ll~G~~G~GKt~~~~~l~~~l~~~~----~~~~~i~~~ 75 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKE-------KNM-------PHLLFAGPPGTGKTTAALALARELYGED----WRENFLELN 75 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhC-------CCC-------CeEEEECCCCCCHHHHHHHHHHHHcCCc----cccceEEec
Confidence 4688899999999988887642 211 2489999999999999999999984321 122345554
Q ss_pred ccccccccccchHHHHHHHHHHHHHHHHh-ccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCc
Q 014376 236 AHSLFSKWFSESGKLVAKLFQKIQEMVEE-ENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPN 314 (426)
Q Consensus 236 ~~~l~~~~~~e~~~~v~~~f~~~~~~~~~-~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~ 314 (426)
+.+... ...+...+......... .....+++|||++.+... ..+.|+..++... .+
T Consensus 76 ~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~---------------~~~~L~~~le~~~--~~ 132 (319)
T PRK00440 76 ASDERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD---------------AQQALRRTMEMYS--QN 132 (319)
T ss_pred cccccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH---------------HHHHHHHHHhcCC--CC
Confidence 433211 11121222111111000 123579999999888542 2345666666533 33
Q ss_pred EEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 315 VIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 315 viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
+.+|.++|....+.+++.+|+. .+.+++++.++...+++..+.+
T Consensus 133 ~~lIl~~~~~~~l~~~l~sr~~-~~~~~~l~~~ei~~~l~~~~~~ 176 (319)
T PRK00440 133 TRFILSCNYSSKIIDPIQSRCA-VFRFSPLKKEAVAERLRYIAEN 176 (319)
T ss_pred CeEEEEeCCccccchhHHHHhh-eeeeCCCCHHHHHHHHHHHHHH
Confidence 4555566777777778889985 6899999999998888887764
No 149
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.22 E-value=8.4e-11 Score=126.52 Aligned_cols=167 Identities=23% Similarity=0.315 Sum_probs=102.5
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhc-------ccccCCCC---
Q 014376 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLS-------IRFSSRYP--- 227 (426)
Q Consensus 158 ~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~-------~~~~~~~~--- 227 (426)
|..++|++.+|..|.-.+..+ + ..+|||.|++|||||+++++|++.+. .+|. ..|
T Consensus 3 f~~ivGq~~~~~al~~~av~~------~--------~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~-c~p~~~ 67 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDP------R--------IGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFS-CDPDDP 67 (633)
T ss_pred cchhcChHHHHHHHHHHhhCC------C--------CCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCC-CCCCCc
Confidence 668999999987776543321 0 23599999999999999999999982 1111 000
Q ss_pred -----------------cceEEEEeccccccccccchHHHHHHHHHH----H-HHHHHhccCcEEEEEechhhHHHHhhh
Q 014376 228 -----------------QCQLVEVNAHSLFSKWFSESGKLVAKLFQK----I-QEMVEEENNLVFVLIDEVESLAAARKA 285 (426)
Q Consensus 228 -----------------~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~----~-~~~~~~~~~~~illIDEid~l~~~r~~ 285 (426)
...++.+.+...-...+|... +...+.. . ...+ ......+|+|||++.+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d--~~~~l~~g~~~~~~G~L-~~A~~GiL~lDEi~~l~~---- 140 (633)
T TIGR02442 68 EEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLD--IERALREGEKAFQPGLL-AEAHRGILYIDEVNLLDD---- 140 (633)
T ss_pred cccChhhhhcccccccCCCCeeeCCCCCcHHHcCCccc--HHHHhhcCCeeecCcce-eecCCCeEEeChhhhCCH----
Confidence 123344333322112222110 1111100 0 0000 112446999999999876
Q ss_pred hccCCCCChhHHHHHHHHHHhhhh-----------cCCCcEEEEEEeCCCC-cCCHHHhcccCeEEEeCCCC-HHHHHHH
Q 014376 286 ALSGSEPSDSIRVVNALLTQMDKL-----------KSSPNVIILTTSNITA-AIDIAFVDRADIKAYVGPPT-LQARYEI 352 (426)
Q Consensus 286 ~ls~~e~~~~~~~~~~ll~~ld~l-----------~~~~~viVi~TtN~~~-~ld~al~~R~~~~i~i~~p~-~~~r~~I 352 (426)
..++.|+..|+.- ....++++|+|+|..+ .+.+++++||+..+.++.+. .+++.++
T Consensus 141 -----------~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~i 209 (633)
T TIGR02442 141 -----------HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEI 209 (633)
T ss_pred -----------HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHH
Confidence 4567777777631 1124689999999653 57899999999999998775 5677888
Q ss_pred HHHHH
Q 014376 353 LRSCL 357 (426)
Q Consensus 353 l~~~l 357 (426)
++..+
T Consensus 210 l~~~~ 214 (633)
T TIGR02442 210 IRRRL 214 (633)
T ss_pred HHHHH
Confidence 77644
No 150
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=2.8e-10 Score=114.44 Aligned_cols=169 Identities=20% Similarity=0.213 Sum_probs=107.7
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccc--------------
Q 014376 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRF-------------- 222 (426)
Q Consensus 157 ~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~-------------- 222 (426)
.|++++|++.+++.|.+.+.. |-- +..+||+||+|+||+++|.++|+.+-..-
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~-------~rl------~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l 83 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRS-------GRL------HHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSL 83 (365)
T ss_pred chhhccChHHHHHHHHHHHHc-------CCC------CceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccc
Confidence 577899999999999987653 211 35699999999999999999999984321
Q ss_pred --cCCCCcce---------EEEEec--ccccccccc-chHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhcc
Q 014376 223 --SSRYPQCQ---------LVEVNA--HSLFSKWFS-ESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALS 288 (426)
Q Consensus 223 --~~~~~~~~---------~i~i~~--~~l~~~~~~-e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls 288 (426)
+...+.|. +..+.. .+-..+... -....++.+-+.+... .....+.|++|||+|.+..
T Consensus 84 ~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~-~~~~~~kVviIDead~m~~------- 155 (365)
T PRK07471 84 AIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLT-AAEGGWRVVIVDTADEMNA------- 155 (365)
T ss_pred cCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcC-cccCCCEEEEEechHhcCH-------
Confidence 00011111 111111 000000000 0112223322222111 1235678999999998854
Q ss_pred CCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHH
Q 014376 289 GSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCL 357 (426)
Q Consensus 289 ~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l 357 (426)
...|.|++.+++ ..+++++|.+|+.++.+.+.+++|+ ..+.+++|+.++..+++....
T Consensus 156 --------~aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~SRc-~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 156 --------NAANALLKVLEE--PPARSLFLLVSHAPARLLPTIRSRC-RKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred --------HHHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhccc-eEEECCCCCHHHHHHHHHHhc
Confidence 567889998875 3455666667777778888999998 788999999999988887653
No 151
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.21 E-value=1.7e-10 Score=123.49 Aligned_cols=171 Identities=18% Similarity=0.255 Sum_probs=106.0
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccC-CCCcceEEEE
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSS-RYPQCQLVEV 234 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~-~~~~~~~i~i 234 (426)
..|++++|++...+.+.+.+.. +. +..++|+|||||||||+|+++++........ ..++..++.+
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~-------~~-------~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVAS-------PF-------PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhc-------CC-------CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 4678899998887776544321 11 3469999999999999999999877432111 1235678889
Q ss_pred ecccccc-------ccccchHHHHHHHHHHHHHHHH------------hccCcEEEEEechhhHHHHhhhhccCCCCChh
Q 014376 235 NAHSLFS-------KWFSESGKLVAKLFQKIQEMVE------------EENNLVFVLIDEVESLAAARKAALSGSEPSDS 295 (426)
Q Consensus 235 ~~~~l~~-------~~~~e~~~~v~~~f~~~~~~~~------------~~~~~~illIDEid~l~~~r~~~ls~~e~~~~ 295 (426)
++..+.. .+++... ...++.++..+. ......+|||||++.|....
T Consensus 217 ~~~~l~~d~~~i~~~llg~~~---~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~------------ 281 (615)
T TIGR02903 217 DGTTLRWDPREVTNPLLGSVH---DPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLL------------ 281 (615)
T ss_pred echhccCCHHHHhHHhcCCcc---HHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHH------------
Confidence 8876521 1111100 011111111111 01245799999998876533
Q ss_pred HHHHHHHHHHhhhhc--------------------------CCCcEEE-EEEeCCCCcCCHHHhcccCeEEEeCCCCHHH
Q 014376 296 IRVVNALLTQMDKLK--------------------------SSPNVII-LTTSNITAAIDIAFVDRADIKAYVGPPTLQA 348 (426)
Q Consensus 296 ~~~~~~ll~~ld~l~--------------------------~~~~viV-i~TtN~~~~ld~al~~R~~~~i~i~~p~~~~ 348 (426)
+..|+..++.-. ....+++ .+|++.+..+++++++||. .+++++++.++
T Consensus 282 ---Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~-~i~~~pls~ed 357 (615)
T TIGR02903 282 ---QNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCA-EVFFEPLTPED 357 (615)
T ss_pred ---HHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhcee-EEEeCCCCHHH
Confidence 334444443210 1123444 4566777889999999995 66889999999
Q ss_pred HHHHHHHHHHH
Q 014376 349 RYEILRSCLQE 359 (426)
Q Consensus 349 r~~Il~~~l~~ 359 (426)
..+|++..+.+
T Consensus 358 i~~Il~~~a~~ 368 (615)
T TIGR02903 358 IALIVLNAAEK 368 (615)
T ss_pred HHHHHHHHHHH
Confidence 99999998775
No 152
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.21 E-value=1.3e-10 Score=115.53 Aligned_cols=160 Identities=19% Similarity=0.237 Sum_probs=105.1
Q ss_pred hhhhhhc-hhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccc------cCC----
Q 014376 157 MWESLIY-ESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRF------SSR---- 225 (426)
Q Consensus 157 ~~~~lv~-~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~------~~~---- 225 (426)
.|++++| ++.+.+.|...+.. ..+ +..+||+||+|+|||++|+.+|+.+-..- ++.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~------~~l-------~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c 69 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK------NRL-------SHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNC 69 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc------CCC-------CceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHH
Confidence 5999999 78888888776542 112 25689999999999999999999984321 011
Q ss_pred -------CCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHH
Q 014376 226 -------YPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRV 298 (426)
Q Consensus 226 -------~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~ 298 (426)
+|+..++..++.. -....++.+...+... .......|++|||+|.+.. ..
T Consensus 70 ~~~~~~~hpD~~~i~~~~~~-------i~id~ir~l~~~~~~~-~~~~~~kvviI~~a~~~~~---------------~a 126 (329)
T PRK08058 70 KRIDSGNHPDVHLVAPDGQS-------IKKDQIRYLKEEFSKS-GVESNKKVYIIEHADKMTA---------------SA 126 (329)
T ss_pred HHHhcCCCCCEEEecccccc-------CCHHHHHHHHHHHhhC-CcccCceEEEeehHhhhCH---------------HH
Confidence 1121111111100 0112233333222210 0123557999999998865 46
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHH
Q 014376 299 VNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRS 355 (426)
Q Consensus 299 ~~~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~ 355 (426)
.|+|++.|+. +++++++|.+++.+..+-+++++|+ ..+++.+|+.++..++++.
T Consensus 127 ~NaLLK~LEE--Pp~~~~~Il~t~~~~~ll~TIrSRc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 127 ANSLLKFLEE--PSGGTTAILLTENKHQILPTILSRC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHHHHHHhcC--CCCCceEEEEeCChHhCcHHHHhhc-eeeeCCCCCHHHHHHHHHH
Confidence 7899999886 4566666667777888889999998 7889999999887766653
No 153
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.20 E-value=3e-10 Score=103.80 Aligned_cols=136 Identities=22% Similarity=0.280 Sum_probs=88.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccc--c----C-----------CCCcceEEEEeccccccccccchHHHHHHHHHH
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRF--S----S-----------RYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQK 257 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~--~----~-----------~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~ 257 (426)
..+||+||+|+|||++++.+++.+...- . . .+++...+..++.. .....++.+.+.
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~-------~~~~~i~~i~~~ 87 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQS-------IKVDQVRELVEF 87 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCc-------CCHHHHHHHHHH
Confidence 5699999999999999999999985320 0 0 01111111111110 112344444444
Q ss_pred HHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCe
Q 014376 258 IQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADI 337 (426)
Q Consensus 258 ~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~ 337 (426)
+.... ......+++|||+|.+.. ...+.|+..|+. ....+++|.+++.+..+.+++++|+ .
T Consensus 88 ~~~~~-~~~~~kviiide~~~l~~---------------~~~~~Ll~~le~--~~~~~~~il~~~~~~~l~~~i~sr~-~ 148 (188)
T TIGR00678 88 LSRTP-QESGRRVVIIEDAERMNE---------------AAANALLKTLEE--PPPNTLFILITPSPEKLLPTIRSRC-Q 148 (188)
T ss_pred HccCc-ccCCeEEEEEechhhhCH---------------HHHHHHHHHhcC--CCCCeEEEEEECChHhChHHHHhhc-E
Confidence 43321 124567999999998865 345778888876 3344555555666688999999998 6
Q ss_pred EEEeCCCCHHHHHHHHHHH
Q 014376 338 KAYVGPPTLQARYEILRSC 356 (426)
Q Consensus 338 ~i~i~~p~~~~r~~Il~~~ 356 (426)
.+.+.+|+.++..++++..
T Consensus 149 ~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 149 VLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred EeeCCCCCHHHHHHHHHHc
Confidence 8999999999988887665
No 154
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.19 E-value=4.6e-11 Score=107.65 Aligned_cols=120 Identities=29% Similarity=0.368 Sum_probs=77.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEe
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLID 274 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illID 274 (426)
..++|+||+|+|||.+|+++|+.+.. .....++.+++..+... .+....+..+.......... ....||+||
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~-----~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~-~~~gVVllD 75 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFV-----GSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGA-EEGGVVLLD 75 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT------SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHH-HHHTEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcc-----CCccchHHHhhhccccc--chHHhhhhhhhhcccceeec-cchhhhhhH
Confidence 46999999999999999999999963 12346689999887651 11112222222222111111 122499999
Q ss_pred chhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhh---------cCCCcEEEEEEeCCCCc
Q 014376 275 EVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL---------KSSPNVIILTTSNITAA 326 (426)
Q Consensus 275 Eid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l---------~~~~~viVi~TtN~~~~ 326 (426)
|||+.... .+++.......+++.||+.|+.- ....+++||+|+|....
T Consensus 76 EidKa~~~----~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 76 EIDKAHPS----NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp TGGGCSHT----TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTH
T ss_pred HHhhcccc----ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccc
Confidence 99999874 23333334457889999998842 12367999999997654
No 155
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.18 E-value=4e-10 Score=111.41 Aligned_cols=163 Identities=15% Similarity=0.196 Sum_probs=108.0
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccc-cCCCCcceEEEEe
Q 014376 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRF-SSRYPQCQLVEVN 235 (426)
Q Consensus 157 ~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~-~~~~~~~~~i~i~ 235 (426)
.|++++|++.+++.|.+.+.. |-- +..+||+||+|+|||++|+++|+.+-... ...+|+. ..+.
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-------~~~------~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~--~~~~ 66 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-------NRF------SHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDI--IEFK 66 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-------CCC------CceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCe--EEec
Confidence 488999999999998877532 211 25689999999999999999999874321 1112232 2222
Q ss_pred ccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcE
Q 014376 236 AHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNV 315 (426)
Q Consensus 236 ~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~v 315 (426)
..+ ++ .-....++.+.+.+.... ......|++||++|.+.. ...|.|+..++. +++++
T Consensus 67 ~~~--~~--~i~v~~ir~~~~~~~~~p-~~~~~kv~iI~~ad~m~~---------------~a~naLLK~LEe--pp~~t 124 (313)
T PRK05564 67 PIN--KK--SIGVDDIRNIIEEVNKKP-YEGDKKVIIIYNSEKMTE---------------QAQNAFLKTIEE--PPKGV 124 (313)
T ss_pred ccc--CC--CCCHHHHHHHHHHHhcCc-ccCCceEEEEechhhcCH---------------HHHHHHHHHhcC--CCCCe
Confidence 210 01 011223444443332211 124567999999988854 467899999886 44555
Q ss_pred EEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHH
Q 014376 316 IILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCL 357 (426)
Q Consensus 316 iVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l 357 (426)
++|.+++.++.+-+++++|+ ..+++.+|+.++....++..+
T Consensus 125 ~~il~~~~~~~ll~TI~SRc-~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 125 FIILLCENLEQILDTIKSRC-QIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred EEEEEeCChHhCcHHHHhhc-eeeeCCCcCHHHHHHHHHHHh
Confidence 66555567788889999999 688999999988877776543
No 156
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=2.4e-10 Score=122.04 Aligned_cols=166 Identities=18% Similarity=0.228 Sum_probs=111.3
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccc-------cCCCC-
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRF-------SSRYP- 227 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~-------~~~~~- 227 (426)
..|++++|++.+++.|...+.. |-- ...+|||||+|+|||++++.+|+.+.... ++.++
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~-------~~l------~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~s 80 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIAT-------NKL------AHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECES 80 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------CCC------CeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchH
Confidence 4699999999999999888653 211 25699999999999999999999985321 11111
Q ss_pred --------cceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHH
Q 014376 228 --------QCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVV 299 (426)
Q Consensus 228 --------~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~ 299 (426)
+..++++++.+- .....++.+...+.... ......|++|||++.+.. ...
T Consensus 81 C~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P-~~~~~KVvIIdea~~Ls~---------------~a~ 138 (614)
T PRK14971 81 CVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPP-QIGKYKIYIIDEVHMLSQ---------------AAF 138 (614)
T ss_pred HHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCc-ccCCcEEEEEECcccCCH---------------HHH
Confidence 112333433211 11233444444433211 123457999999998854 457
Q ss_pred HHHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 300 NALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 300 ~~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
+.|+..|+.. ...+++|.+++....+-+++++|+ ..+.+.+++.++....++..+.+
T Consensus 139 naLLK~LEep--p~~tifIL~tt~~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~ 195 (614)
T PRK14971 139 NAFLKTLEEP--PSYAIFILATTEKHKILPTILSRC-QIFDFNRIQVADIVNHLQYVASK 195 (614)
T ss_pred HHHHHHHhCC--CCCeEEEEEeCCchhchHHHHhhh-heeecCCCCHHHHHHHHHHHHHH
Confidence 8899888863 345566556666678888999998 67999999998888877766654
No 157
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.16 E-value=8.8e-10 Score=110.26 Aligned_cols=167 Identities=16% Similarity=0.201 Sum_probs=105.5
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccc-------cC-----
Q 014376 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRF-------SS----- 224 (426)
Q Consensus 157 ~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~-------~~----- 224 (426)
.++.|+|++++++.|...+.. |-- +..+||+||+|+|||++++.+|+.+...- ..
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~-------grl------~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~ 87 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYRE-------GKL------HHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDP 87 (351)
T ss_pred chhhccCcHHHHHHHHHHHHc-------CCC------CeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCC
Confidence 577899999999999887642 211 24699999999999999999999985410 00
Q ss_pred CCCcce---------EEEEecc-cccc-cc-ccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCC
Q 014376 225 RYPQCQ---------LVEVNAH-SLFS-KW-FSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEP 292 (426)
Q Consensus 225 ~~~~~~---------~i~i~~~-~l~~-~~-~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~ 292 (426)
..+.+. ++.+... +... +. ..-....++.+-+.+... .......|++|||+|.+..
T Consensus 88 ~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~-~~~g~~rVviIDeAd~l~~----------- 155 (351)
T PRK09112 88 ASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQT-SGDGNWRIVIIDPADDMNR----------- 155 (351)
T ss_pred CCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhc-cccCCceEEEEEchhhcCH-----------
Confidence 000010 1111110 0000 00 000112222222221111 1134567999999999865
Q ss_pred ChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHH
Q 014376 293 SDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRS 355 (426)
Q Consensus 293 ~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~ 355 (426)
...|+|++.+++ ...++++|..++.+..+.+.+++|+ ..+.+++|+.++..++++.
T Consensus 156 ----~aanaLLk~LEE--pp~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~ 211 (351)
T PRK09112 156 ----NAANAILKTLEE--PPARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSH 211 (351)
T ss_pred ----HHHHHHHHHHhc--CCCCceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHH
Confidence 456889999887 3344555555566778889999999 6999999999999988876
No 158
>PRK06620 hypothetical protein; Validated
Probab=99.15 E-value=2.8e-10 Score=106.32 Aligned_cols=114 Identities=17% Similarity=0.259 Sum_probs=81.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEe
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLID 274 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illID 274 (426)
+.++||||||+|||+|++++++..+..+ +..... . .. .. ....+++||
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~-----------~~~~~~-----~------~~----~~------~~~d~lliD 92 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYI-----------IKDIFF-----N------EE----IL------EKYNAFIIE 92 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEE-----------cchhhh-----c------hh----HH------hcCCEEEEe
Confidence 5699999999999999999988764211 111000 0 00 01 123689999
Q ss_pred chhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCc--CCHHHhccc--CeEEEeCCCCHHHHH
Q 014376 275 EVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAA--IDIAFVDRA--DIKAYVGPPTLQARY 350 (426)
Q Consensus 275 Eid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~--ld~al~~R~--~~~i~i~~p~~~~r~ 350 (426)
|++.+.. ..++..++.++..+..++++++..+.. + +++++|+ +..+.+.+|+.+.+.
T Consensus 93 di~~~~~------------------~~lf~l~N~~~e~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~ 153 (214)
T PRK06620 93 DIENWQE------------------PALLHIFNIINEKQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIK 153 (214)
T ss_pred ccccchH------------------HHHHHHHHHHHhcCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHH
Confidence 9994411 256677777777888888888776665 5 7889997 357899999999999
Q ss_pred HHHHHHHHH
Q 014376 351 EILRSCLQE 359 (426)
Q Consensus 351 ~Il~~~l~~ 359 (426)
.+++..+..
T Consensus 154 ~~l~k~~~~ 162 (214)
T PRK06620 154 ILIFKHFSI 162 (214)
T ss_pred HHHHHHHHH
Confidence 999888765
No 159
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.15 E-value=5.8e-10 Score=116.64 Aligned_cols=167 Identities=22% Similarity=0.317 Sum_probs=103.3
Q ss_pred hhhhhhchhhHHHHHHHHHHHH--HHHh----h--------------cCCCCccccCCcEEEEEcCCCCcHHHHHHHHHH
Q 014376 157 MWESLIYESGLKQRLLHYAASA--LMFA----E--------------KGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQ 216 (426)
Q Consensus 157 ~~~~lv~~~~~k~~L~~~~~~~--~~~~----~--------------~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~ 216 (426)
.|.+|.+++.+-..++.+++.. -.|. + .+.++..-+..+.+||+||||.||||||+.+|+
T Consensus 269 ~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHViAk 348 (877)
T KOG1969|consen 269 KFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHVIAK 348 (877)
T ss_pred HHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHHHHHHH
Confidence 4567888888888888887642 2333 1 122333334468899999999999999999999
Q ss_pred HhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHH---HHhccCcEEEEEechhhHHHHhhhhccCCCCC
Q 014376 217 KLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEM---VEEENNLVFVLIDEVESLAAARKAALSGSEPS 293 (426)
Q Consensus 217 ~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~---~~~~~~~~illIDEid~l~~~r~~~ls~~e~~ 293 (426)
..|.. +++||+++-.+ ...+......+-.+ .....+|.||+|||||--.
T Consensus 349 qaGYs---------VvEINASDeRt------~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~------------- 400 (877)
T KOG1969|consen 349 QAGYS---------VVEINASDERT------APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP------------- 400 (877)
T ss_pred hcCce---------EEEeccccccc------HHHHHHHHHHHHhhccccccCCCcceEEEecccCCc-------------
Confidence 99754 49999988532 22222222222111 1223689999999998433
Q ss_pred hhHHHHHHHHHHhhhh------cCC----------C---cEEEEEEeCCCCcCCHHHh--cccCeEEEeCCCCHHHHHHH
Q 014376 294 DSIRVVNALLTQMDKL------KSS----------P---NVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEI 352 (426)
Q Consensus 294 ~~~~~~~~ll~~ld~l------~~~----------~---~viVi~TtN~~~~ld~al~--~R~~~~i~i~~p~~~~r~~I 352 (426)
...++.++..+..- +.. . .--|||.+|... -|+++ +-|..+++|.+|......+-
T Consensus 401 --~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~s~Lv~R 476 (877)
T KOG1969|consen 401 --RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQSRLVER 476 (877)
T ss_pred --HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCChhHHHHH
Confidence 23445555554411 000 0 123566677544 46766 45778889988887766544
Q ss_pred HHH
Q 014376 353 LRS 355 (426)
Q Consensus 353 l~~ 355 (426)
|+.
T Consensus 477 L~~ 479 (877)
T KOG1969|consen 477 LNE 479 (877)
T ss_pred HHH
Confidence 433
No 160
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.14 E-value=3.1e-09 Score=98.31 Aligned_cols=160 Identities=24% Similarity=0.310 Sum_probs=110.6
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecc
Q 014376 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (426)
Q Consensus 158 ~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (426)
..+|+|.+.+|+.|.+- ...|. .|.+. .+|||+|.-|||||+|+||+-.+++.. +..+++|+-.
T Consensus 59 L~~l~Gvd~qk~~L~~N---T~~F~-~G~pA------NnVLLwGaRGtGKSSLVKA~~~e~~~~------glrLVEV~k~ 122 (287)
T COG2607 59 LADLVGVDRQKEALVRN---TEQFA-EGLPA------NNVLLWGARGTGKSSLVKALLNEYADE------GLRLVEVDKE 122 (287)
T ss_pred HHHHhCchHHHHHHHHH---HHHHH-cCCcc------cceEEecCCCCChHHHHHHHHHHHHhc------CCeEEEEcHH
Confidence 56799999999887643 33444 35553 569999999999999999999998643 2347888876
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhh--cCCCcE
Q 014376 238 SLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL--KSSPNV 315 (426)
Q Consensus 238 ~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l--~~~~~v 315 (426)
++. .+..++...+. ....-|||+|++ |-.+..++... |-..|++= ..+.||
T Consensus 123 dl~---------~Lp~l~~~Lr~----~~~kFIlFcDDL-----------SFe~gd~~yK~---LKs~LeG~ve~rP~NV 175 (287)
T COG2607 123 DLA---------TLPDLVELLRA----RPEKFILFCDDL-----------SFEEGDDAYKA---LKSALEGGVEGRPANV 175 (287)
T ss_pred HHh---------hHHHHHHHHhc----CCceEEEEecCC-----------CCCCCchHHHH---HHHHhcCCcccCCCeE
Confidence 653 23344444443 245679999983 22222222333 33334431 356799
Q ss_pred EEEEEeCCCCcCCH----------------------HHhcccCeEEEeCCCCHHHHHHHHHHHHHHH
Q 014376 316 IILTTSNITAAIDI----------------------AFVDRADIKAYVGPPTLQARYEILRSCLQEL 360 (426)
Q Consensus 316 iVi~TtN~~~~ld~----------------------al~~R~~~~i~i~~p~~~~r~~Il~~~l~~l 360 (426)
+|.+|+|+...+.+ .+-+||+..+.|.+++.++...|+.++.+..
T Consensus 176 l~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~ 242 (287)
T COG2607 176 LFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHF 242 (287)
T ss_pred EEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHc
Confidence 99999998766521 1338999999999999999999999999774
No 161
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.14 E-value=1.1e-11 Score=107.46 Aligned_cols=112 Identities=29% Similarity=0.452 Sum_probs=66.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccc------cccccchHHHHHHHHHHHHHHHHhccCcE
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLF------SKWFSESGKLVAKLFQKIQEMVEEENNLV 269 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~------~~~~~e~~~~v~~~f~~~~~~~~~~~~~~ 269 (426)
.|+|+||||||||++++.+|+.++.++ +.++++... ..|.-..+.. .|.. ..+......+.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~---------~~i~~~~~~~~~dl~g~~~~~~~~~---~~~~-~~l~~a~~~~~ 67 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPV---------IRINCSSDTTEEDLIGSYDPSNGQF---EFKD-GPLVRAMRKGG 67 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEE---------EEEE-TTTSTHHHHHCEEET-TTTT---CEEE--CCCTTHHEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcce---------EEEEeccccccccceeeeeeccccc---cccc-cccccccccee
Confidence 389999999999999999999996554 556655432 1111000000 0000 00000012678
Q ss_pred EEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhh-----------cCCC------cEEEEEEeCCCC----cCC
Q 014376 270 FVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL-----------KSSP------NVIILTTSNITA----AID 328 (426)
Q Consensus 270 illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l-----------~~~~------~viVi~TtN~~~----~ld 328 (426)
+++|||++.... .++..|+..++.- +... ++.+|+|+|... .++
T Consensus 68 il~lDEin~a~~---------------~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~ 132 (139)
T PF07728_consen 68 ILVLDEINRAPP---------------EVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELS 132 (139)
T ss_dssp EEEESSCGG--H---------------HHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTC
T ss_pred EEEECCcccCCH---------------HHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCC
Confidence 999999997765 4455555555521 1112 489999999998 789
Q ss_pred HHHhccc
Q 014376 329 IAFVDRA 335 (426)
Q Consensus 329 ~al~~R~ 335 (426)
+++++||
T Consensus 133 ~al~~Rf 139 (139)
T PF07728_consen 133 PALLDRF 139 (139)
T ss_dssp HHHHTT-
T ss_pred HHHHhhC
Confidence 9999997
No 162
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.13 E-value=4.9e-10 Score=113.90 Aligned_cols=164 Identities=18% Similarity=0.282 Sum_probs=87.0
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecc
Q 014376 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (426)
Q Consensus 158 ~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (426)
.+++++.++..+.+...+.. +++++|+||||||||++|+.+|..+..... ......+.+...
T Consensus 174 l~d~~i~e~~le~l~~~L~~----------------~~~iil~GppGtGKT~lA~~la~~l~~~~~--~~~v~~VtFHps 235 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI----------------KKNIILQGPPGVGKTFVARRLAYLLTGEKA--PQRVNMVQFHQS 235 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc----------------CCCEEEECCCCCCHHHHHHHHHHHhcCCcc--cceeeEEeeccc
Confidence 55666777666666554331 456999999999999999999998853210 011112222211
Q ss_pred ----ccccccc-cchH-----HHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhh-hh-ccCCCCChhHH--HHHHHH
Q 014376 238 ----SLFSKWF-SESG-----KLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARK-AA-LSGSEPSDSIR--VVNALL 303 (426)
Q Consensus 238 ----~l~~~~~-~e~~-----~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~-~~-ls~~e~~~~~~--~~~~ll 303 (426)
++...+. ...+ ..+.++...+.. ....+.+++|||++.....+. +. +.--+...... .+....
T Consensus 236 ySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~---~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y 312 (459)
T PRK11331 236 YSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKE---QPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTY 312 (459)
T ss_pred ccHHHHhcccCCCCCCeEecCchHHHHHHHHHh---cccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeec
Confidence 1111110 1001 112223333332 224678999999987654331 11 11111110000 000000
Q ss_pred HH--hhhhcCCCcEEEEEEeCCCC----cCCHHHhcccCeEEEeCC
Q 014376 304 TQ--MDKLKSSPNVIILTTSNITA----AIDIAFVDRADIKAYVGP 343 (426)
Q Consensus 304 ~~--ld~l~~~~~viVi~TtN~~~----~ld~al~~R~~~~i~i~~ 343 (426)
.. .+.+.-..++.||+|.|..+ .+|.||++||.. +.+.+
T Consensus 313 ~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~f-i~i~p 357 (459)
T PRK11331 313 SENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSF-IDIEP 357 (459)
T ss_pred cccccccccCCCCeEEEEecCccccchhhccHHHHhhhhe-EEecC
Confidence 00 12355678999999999988 589999999954 44443
No 163
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.13 E-value=3.8e-10 Score=95.75 Aligned_cols=131 Identities=22% Similarity=0.269 Sum_probs=77.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccccccc--------------ccchHHHHHHHHHHHH
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKW--------------FSESGKLVAKLFQKIQ 259 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~--------------~~e~~~~v~~~f~~~~ 259 (426)
+..++|+||||||||++++.+|+.+.... ..++.+++......+ ..........++..++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG------GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALAR 75 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC------CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999999999996432 235666665543221 1222334444455544
Q ss_pred HHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCC-CCcCCHHHhcccCeE
Q 014376 260 EMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNI-TAAIDIAFVDRADIK 338 (426)
Q Consensus 260 ~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~-~~~ld~al~~R~~~~ 338 (426)
. ..+.++++||++.+......... ................+..+++++|. ....+..+..|++..
T Consensus 76 ~-----~~~~viiiDei~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 141 (148)
T smart00382 76 K-----LKPDVLILDEITSLLDAEQEALL---------LLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRR 141 (148)
T ss_pred h-----cCCCEEEEECCcccCCHHHHHHH---------HhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhhccceE
Confidence 4 23689999999988654322110 00000011122233456677777775 334455666788888
Q ss_pred EEeCCC
Q 014376 339 AYVGPP 344 (426)
Q Consensus 339 i~i~~p 344 (426)
+.+..+
T Consensus 142 ~~~~~~ 147 (148)
T smart00382 142 IVLLLI 147 (148)
T ss_pred EEecCC
Confidence 777654
No 164
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.2e-09 Score=114.75 Aligned_cols=184 Identities=30% Similarity=0.442 Sum_probs=150.3
Q ss_pred HHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHH
Q 014376 180 MFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQ 259 (426)
Q Consensus 180 ~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~ 259 (426)
.+...+..+ .++++++||||+|||+++++++.. +.. . ..+++....+++.+++......+|..+.
T Consensus 9 ~~~~~~~~~-----~~~v~~~g~~~~~~t~~~~~~a~~-~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 73 (494)
T COG0464 9 LFKKLGIEP-----PKGVLLHGPPGTGKTLLARALANE-GAE--------F-LSINGPEILSKYVGESELRLRELFEEAE 73 (494)
T ss_pred HHHHhCCCC-----CCCceeeCCCCCchhHHHHHHHhc-cCc--------c-cccCcchhhhhhhhHHHHHHHHHHHHHH
Confidence 344445554 688999999999999999999998 322 2 6688888889999999999999999988
Q ss_pred HHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHh--cccCe
Q 014376 260 EMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFV--DRADI 337 (426)
Q Consensus 260 ~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~--~R~~~ 337 (426)
.. .++++++||++.+...+.. .......+++..++..++.+. ...++++..+|.+..+|++++ .||+.
T Consensus 74 ~~-----~~~ii~~d~~~~~~~~~~~----~~~~~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~ 143 (494)
T COG0464 74 KL-----APSIIFIDEIDALAPKRSS----DQGEVERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDR 143 (494)
T ss_pred Hh-----CCCeEeechhhhcccCccc----cccchhhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccce
Confidence 84 6799999999999988755 223345678899999999988 444888889999999999988 89999
Q ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhccCchHHHHhhh
Q 014376 338 KAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADR 397 (426)
Q Consensus 338 ~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~s~~di~~~~~ 397 (426)
.+.++.|+...+.+|+......... ....++..++..+.|+..+++...+.
T Consensus 144 ~~~~~~~~~~~~~ei~~~~~~~~~~---------~~~~~~~~~a~~~~~~~~~~~~~l~~ 194 (494)
T COG0464 144 EIEVNLPDEAGRLEILQIHTRLMFL---------GPPGTGKTLAARTVGKSGADLGALAK 194 (494)
T ss_pred eeecCCCCHHHHHHHHHHHHhcCCC---------cccccHHHHHHhcCCccHHHHHHHHH
Confidence 9999999999998888877765432 22557789999999999999877753
No 165
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.11 E-value=1.1e-09 Score=97.96 Aligned_cols=147 Identities=19% Similarity=0.251 Sum_probs=89.2
Q ss_pred chhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCC--------------CCc
Q 014376 163 YESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSR--------------YPQ 228 (426)
Q Consensus 163 ~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~--------------~~~ 228 (426)
|++++.+.|.+.+.. ..+ +..+||+||+|+||+++|+++|+.+-..-... ..+
T Consensus 1 gq~~~~~~L~~~~~~------~~l-------~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~ 67 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS------GRL-------PHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNH 67 (162)
T ss_dssp S-HHHHHHHHHHHHC------TC---------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-C
T ss_pred CcHHHHHHHHHHHHc------CCc-------ceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccC
Confidence 456666667665542 111 35699999999999999999999984322110 112
Q ss_pred ceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhh
Q 014376 229 CQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK 308 (426)
Q Consensus 229 ~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~ 308 (426)
..+..+....-.. .-....++.+...+... .......|++||++|.+.. ...|+||+.|++
T Consensus 68 ~d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~-~~~~~~KviiI~~ad~l~~---------------~a~NaLLK~LEe 128 (162)
T PF13177_consen 68 PDFIIIKPDKKKK---SIKIDQIREIIEFLSLS-PSEGKYKVIIIDEADKLTE---------------EAQNALLKTLEE 128 (162)
T ss_dssp TTEEEEETTTSSS---SBSHHHHHHHHHHCTSS--TTSSSEEEEEETGGGS-H---------------HHHHHHHHHHHS
T ss_pred cceEEEecccccc---hhhHHHHHHHHHHHHHH-HhcCCceEEEeehHhhhhH---------------HHHHHHHHHhcC
Confidence 2334443332210 01123333333332211 1124578999999999976 678999999987
Q ss_pred hcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCC
Q 014376 309 LKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPP 344 (426)
Q Consensus 309 l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p 344 (426)
...++++|.+++.+..+-+.+++|+ ..+.+++.
T Consensus 129 --pp~~~~fiL~t~~~~~il~TI~SRc-~~i~~~~l 161 (162)
T PF13177_consen 129 --PPENTYFILITNNPSKILPTIRSRC-QVIRFRPL 161 (162)
T ss_dssp --TTTTEEEEEEES-GGGS-HHHHTTS-EEEEE---
T ss_pred --CCCCEEEEEEECChHHChHHHHhhc-eEEecCCC
Confidence 4578888888899999999999998 67777664
No 166
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.10 E-value=1.4e-09 Score=107.38 Aligned_cols=158 Identities=25% Similarity=0.277 Sum_probs=101.2
Q ss_pred hhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCC-------------
Q 014376 160 SLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRY------------- 226 (426)
Q Consensus 160 ~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~------------- 226 (426)
.+++.+.....+..++.... .. +..+||+||||+|||++|.++|+.+........
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~-----~~-------~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~ 69 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG-----RL-------PHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIP 69 (325)
T ss_pred CcccchhHHHHHHHHHHhcC-----CC-------CceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHh
Confidence 34556666666666654211 11 124999999999999999999999963321111
Q ss_pred --CcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHH
Q 014376 227 --PQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLT 304 (426)
Q Consensus 227 --~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~ 304 (426)
.+-.+++++..+....- .....++.+-+..... .......|++|||+|.+.. ...|+++.
T Consensus 70 ~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~-~~~~~~kviiidead~mt~---------------~A~nallk 131 (325)
T COG0470 70 AGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSES-PLEGGYKVVIIDEADKLTE---------------DAANALLK 131 (325)
T ss_pred hcCCCceEEecccccCCCc--chHHHHHHHHHHhccC-CCCCCceEEEeCcHHHHhH---------------HHHHHHHH
Confidence 12356777776654321 1112222222221110 0114568999999999987 46688888
Q ss_pred HhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHH
Q 014376 305 QMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARY 350 (426)
Q Consensus 305 ~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~ 350 (426)
.++. ...++.++.++|.+..+-+.+++|+ ..+.|.+|+.....
T Consensus 132 ~lEe--p~~~~~~il~~n~~~~il~tI~SRc-~~i~f~~~~~~~~i 174 (325)
T COG0470 132 TLEE--PPKNTRFILITNDPSKILPTIRSRC-QRIRFKPPSRLEAI 174 (325)
T ss_pred Hhcc--CCCCeEEEEEcCChhhccchhhhcc-eeeecCCchHHHHH
Confidence 8765 5567888888898888888999998 67888776654443
No 167
>PRK09087 hypothetical protein; Validated
Probab=99.08 E-value=3.3e-10 Score=106.76 Aligned_cols=119 Identities=16% Similarity=0.228 Sum_probs=85.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEe
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLID 274 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illID 274 (426)
..++|+||+|+|||||+++++...+. .+++...+.. ..+.... ..+++||
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~-----------~~i~~~~~~~-----------~~~~~~~--------~~~l~iD 94 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDA-----------LLIHPNEIGS-----------DAANAAA--------EGPVLIE 94 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCC-----------EEecHHHcch-----------HHHHhhh--------cCeEEEE
Confidence 45999999999999999999887532 2344332211 1111111 1478899
Q ss_pred chhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCcC---CHHHhccc--CeEEEeCCCCHHHH
Q 014376 275 EVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAI---DIAFVDRA--DIKAYVGPPTLQAR 349 (426)
Q Consensus 275 Eid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~l---d~al~~R~--~~~i~i~~p~~~~r 349 (426)
|++.+.. ...++++.++.+...++.+|++++..+..+ .+.+++|+ +..+.+.+|+.+.+
T Consensus 95 Di~~~~~----------------~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~ 158 (226)
T PRK09087 95 DIDAGGF----------------DETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALL 158 (226)
T ss_pred CCCCCCC----------------CHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHH
Confidence 9986521 124577888877777888888887666543 57789998 47899999999999
Q ss_pred HHHHHHHHHH
Q 014376 350 YEILRSCLQE 359 (426)
Q Consensus 350 ~~Il~~~l~~ 359 (426)
.++++++++.
T Consensus 159 ~~iL~~~~~~ 168 (226)
T PRK09087 159 SQVIFKLFAD 168 (226)
T ss_pred HHHHHHHHHH
Confidence 9999999977
No 168
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.07 E-value=1.7e-09 Score=107.22 Aligned_cols=140 Identities=22% Similarity=0.310 Sum_probs=93.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccc------cCCCCcce---------EEEEeccccccccccchHHHHHHHHHHHH
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRF------SSRYPQCQ---------LVEVNAHSLFSKWFSESGKLVAKLFQKIQ 259 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~------~~~~~~~~---------~i~i~~~~l~~~~~~e~~~~v~~~f~~~~ 259 (426)
..+||+||+|+|||++|+++|+.+.... ++.++.|. +..+....- ++ .-....++.+...+.
T Consensus 23 ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~~~~ 99 (328)
T PRK05707 23 HAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVSFVV 99 (328)
T ss_pred eeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHHHHh
Confidence 5699999999999999999999995421 11111121 222211100 00 011234444443333
Q ss_pred HHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEE
Q 014376 260 EMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKA 339 (426)
Q Consensus 260 ~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i 339 (426)
... ......|++||++|.+.. ...|+||+.|++ +.+++++|.+|+.+..+.+.+++|+ ..+
T Consensus 100 ~~~-~~~~~kv~iI~~a~~m~~---------------~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~SRc-~~~ 160 (328)
T PRK05707 100 QTA-QLGGRKVVLIEPAEAMNR---------------NAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKSRC-QQQ 160 (328)
T ss_pred hcc-ccCCCeEEEECChhhCCH---------------HHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHhhc-eee
Confidence 211 124567889999999876 567999999887 4567788888888888999999999 568
Q ss_pred EeCCCCHHHHHHHHHHH
Q 014376 340 YVGPPTLQARYEILRSC 356 (426)
Q Consensus 340 ~i~~p~~~~r~~Il~~~ 356 (426)
.|++|+.++..+.+...
T Consensus 161 ~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 161 ACPLPSNEESLQWLQQA 177 (328)
T ss_pred eCCCcCHHHHHHHHHHh
Confidence 99999998888777654
No 169
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.07 E-value=2.3e-09 Score=106.27 Aligned_cols=70 Identities=26% Similarity=0.403 Sum_probs=51.5
Q ss_pred hhh-hhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEe
Q 014376 157 MWE-SLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVN 235 (426)
Q Consensus 157 ~~~-~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~ 235 (426)
.|+ +++|.++.+.++.+++..+.. |... .++.++|+||||+|||||+++|++.++.. +..+.+.++.+.
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a~----g~~~----~r~il~L~GPPGsGKStla~~La~~l~~y--s~t~eG~~Y~~~ 117 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAAQ----GLEE----RKQILYLLGPVGGGKSSLVECLKRGLEEY--SKTPEGRRYTFK 117 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHh----cCCC----CCcEEEEECCCCCCHHHHHHHHHHHHhhh--cccccCceEEEE
Confidence 445 799999999999999876542 2221 25789999999999999999999999752 122344556665
Q ss_pred c
Q 014376 236 A 236 (426)
Q Consensus 236 ~ 236 (426)
.
T Consensus 118 ~ 118 (361)
T smart00763 118 W 118 (361)
T ss_pred e
Confidence 5
No 170
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.06 E-value=1.3e-09 Score=116.20 Aligned_cols=196 Identities=17% Similarity=0.130 Sum_probs=113.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHH-----HHHHhccCcE
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQ-----EMVEEENNLV 269 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~-----~~~~~~~~~~ 269 (426)
.+|||.|+||||||++++++++.+... ..++.+..+..-...+|.. .+...+..-. ..+ ...+..
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~-------~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L-~~A~~G 86 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPI-------MPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLL-DEAPRG 86 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcC-------CCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCe-eeCCCC
Confidence 469999999999999999999987531 1235454322212222221 0000000000 000 012446
Q ss_pred EEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc-----------CCCcEEEEEEeCCCC---cCCHHHhccc
Q 014376 270 FVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK-----------SSPNVIILTTSNITA---AIDIAFVDRA 335 (426)
Q Consensus 270 illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~-----------~~~~viVi~TtN~~~---~ld~al~~R~ 335 (426)
+|++||++.+.. ..++.|+..|+.-. ....+.||+|+|..+ .+.+++++||
T Consensus 87 vL~lDEi~rl~~---------------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf 151 (589)
T TIGR02031 87 VLYVDMANLLDD---------------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRL 151 (589)
T ss_pred cEeccchhhCCH---------------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhc
Confidence 999999998876 45677777776321 124688999999875 6889999999
Q ss_pred CeEEEeCC-CCHHHHHHHHHHHHHHHHHhC----------ccccCCCCCCC-----chhhHHHHhhccCchHHHHhhhhH
Q 014376 336 DIKAYVGP-PTLQARYEILRSCLQELIRTG----------IISNFQDCDQS-----MLPNFSILKEKLSNPDIQEADRSQ 399 (426)
Q Consensus 336 ~~~i~i~~-p~~~~r~~Il~~~l~~l~~~~----------~i~~~~~~~~~-----~l~~l~~~~~~~s~~di~~~~~~~ 399 (426)
+.++.+.. |+.++|.+|++..+....... +.......... .+..+...+ +.--+...
T Consensus 152 ~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~-------~~~gv~s~ 224 (589)
T TIGR02031 152 ALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTA-------ASLGISGH 224 (589)
T ss_pred cCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHH-------HHcCCCCc
Confidence 99887764 567778999988763321100 00000000000 111111111 11111123
Q ss_pred HHHHHHHHHHHHcccCCCcceee
Q 014376 400 HFYKQLLEAAEACEVRNKMFHLI 422 (426)
Q Consensus 400 ~~~~~L~~~a~~~~glsgr~~~~ 422 (426)
+....++++|++.+-|.||.+..
T Consensus 225 Ra~i~~~r~ArA~Aal~gr~~V~ 247 (589)
T TIGR02031 225 RADLFAVRAAKAHAALHGRTEVT 247 (589)
T ss_pred cHHHHHHHHHHHHHHHhCCCCCC
Confidence 56778999999999999998764
No 171
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.05 E-value=1.7e-10 Score=105.78 Aligned_cols=156 Identities=21% Similarity=0.247 Sum_probs=67.7
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhccccc-------CCCCcce
Q 014376 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS-------SRYPQCQ 230 (426)
Q Consensus 158 ~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~-------~~~~~~~ 230 (426)
|.+++|++..|..|.-.+. | +.++||+||||||||++|+.+...+..-.. ..+.-++
T Consensus 2 f~dI~GQe~aKrAL~iAAa--------G--------~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~ 65 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA--------G--------GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAG 65 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH--------C--------C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT--
T ss_pred hhhhcCcHHHHHHHHHHHc--------C--------CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhcccccccc
Confidence 5678999999988876543 3 467999999999999999999998742210 0010000
Q ss_pred ----EEEEeccccccccccchHHHHHHHHHHHHHH---HHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHH
Q 014376 231 ----LVEVNAHSLFSKWFSESGKLVAKLFQKIQEM---VEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALL 303 (426)
Q Consensus 231 ----~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~---~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll 303 (426)
...+....+.. ...+. ....++.-.... .-...+..|||+||+..+.. .+++.|+
T Consensus 66 ~~~~~~~~~~~Pfr~--phhs~-s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~---------------~vld~Lr 127 (206)
T PF01078_consen 66 LGPDEGLIRQRPFRA--PHHSA-SEAALIGGGRPPRPGEISLAHRGVLFLDELNEFDR---------------SVLDALR 127 (206)
T ss_dssp -S---EEEE---EEE--E-TT---HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-H---------------HHHHHHH
T ss_pred CCCCCceecCCCccc--CCCCc-CHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCH---------------HHHHHHH
Confidence 00000000000 00000 011111100000 00123568999999887754 6778888
Q ss_pred HHhhhh-----------cCCCcEEEEEEeCCC-----------------------CcCCHHHhcccCeEEEeCCCCHH
Q 014376 304 TQMDKL-----------KSSPNVIILTTSNIT-----------------------AAIDIAFVDRADIKAYVGPPTLQ 347 (426)
Q Consensus 304 ~~ld~l-----------~~~~~viVi~TtN~~-----------------------~~ld~al~~R~~~~i~i~~p~~~ 347 (426)
.-++.- ....++++++|.|.- ..+...+++|||+.+.++..+.+
T Consensus 128 ~ple~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 128 QPLEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEVPRVSYE 205 (206)
T ss_dssp HHHHHSBEEEEETTEEEEEB--EEEEEEE-S-----------------------------------------------
T ss_pred HHHHCCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence 887642 123468999999852 22466788999998888876654
No 172
>PRK08116 hypothetical protein; Validated
Probab=99.03 E-value=2e-09 Score=103.95 Aligned_cols=173 Identities=21% Similarity=0.241 Sum_probs=94.2
Q ss_pred ccccccchhhhhhhchhhH---HHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCC
Q 014376 149 LPAKEFDGMWESLIYESGL---KQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSR 225 (426)
Q Consensus 149 lp~~~~~~~~~~lv~~~~~---k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~ 225 (426)
+|..-.+..|+++...++. .+...+|+.. |.... ..+.+++|+|++|||||+|+.++++.+...
T Consensus 75 i~~~~~~~tFdnf~~~~~~~~a~~~a~~y~~~---~~~~~------~~~~gl~l~G~~GtGKThLa~aia~~l~~~---- 141 (268)
T PRK08116 75 LDEKFRNSTFENFLFDKGSEKAYKIARKYVKK---FEEMK------KENVGLLLWGSVGTGKTYLAACIANELIEK---- 141 (268)
T ss_pred CCHHHHhcchhcccCChHHHHHHHHHHHHHHH---HHhhc------cCCceEEEECCCCCCHHHHHHHHHHHHHHc----
Confidence 3444444567766644433 2334444432 22211 114579999999999999999999998432
Q ss_pred CCcceEEEEeccccccccccc----hHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHH
Q 014376 226 YPQCQLVEVNAHSLFSKWFSE----SGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNA 301 (426)
Q Consensus 226 ~~~~~~i~i~~~~l~~~~~~e----~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ 301 (426)
+..++.++..++...+... .......+++. .....+|+|||+.... ........
T Consensus 142 --~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~-------l~~~dlLviDDlg~e~-------------~t~~~~~~ 199 (268)
T PRK08116 142 --GVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRS-------LVNADLLILDDLGAER-------------DTEWAREK 199 (268)
T ss_pred --CCeEEEEEHHHHHHHHHHHHhccccccHHHHHHH-------hcCCCEEEEecccCCC-------------CCHHHHHH
Confidence 2345677766654322110 00011111111 1344689999984321 11244566
Q ss_pred HHHHhhhhcCCCcEEEEEEeCCC-Cc----CCHHHhccc---CeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 302 LLTQMDKLKSSPNVIILTTSNIT-AA----IDIAFVDRA---DIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 302 ll~~ld~l~~~~~viVi~TtN~~-~~----ld~al~~R~---~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
|+..++.....+..+|++ ||.+ .. ++..+.+|+ ...+.+..++. |.++.+..++.
T Consensus 200 l~~iin~r~~~~~~~IiT-sN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~--R~~~~~ek~~~ 262 (268)
T PRK08116 200 VYNIIDSRYRKGLPTIVT-TNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY--RKEIAKEKLQR 262 (268)
T ss_pred HHHHHHHHHHCCCCEEEE-CCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh--hHHHHHHHHHH
Confidence 777777655444555554 4544 33 467788884 34566666664 55555554433
No 173
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.01 E-value=2.1e-09 Score=106.84 Aligned_cols=143 Identities=22% Similarity=0.240 Sum_probs=94.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccc-------CCCCcce---------EEEEeccccc-----------------
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFS-------SRYPQCQ---------LVEVNAHSLF----------------- 240 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~-------~~~~~~~---------~i~i~~~~l~----------------- 240 (426)
+..+||+||+|+||+++|+.+|+.+..... +.++.|. +..+......
T Consensus 21 ~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~~ 100 (342)
T PRK06964 21 PHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADADE 100 (342)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchhhc
Confidence 357999999999999999999999865321 1111111 2222111000
Q ss_pred -cc---cc--cchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCc
Q 014376 241 -SK---WF--SESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPN 314 (426)
Q Consensus 241 -~~---~~--~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~ 314 (426)
++ -. .-.-..++.+.+.+... .......|++||++|.+.. ...|+||+.|++ +.++
T Consensus 101 ~~~k~~~~~~~I~idqiR~l~~~~~~~-~~~~~~kV~iI~~ae~m~~---------------~AaNaLLKtLEE--Pp~~ 162 (342)
T PRK06964 101 GGKKTKAPSKEIKIEQVRALLDFCGVG-THRGGARVVVLYPAEALNV---------------AAANALLKTLEE--PPPG 162 (342)
T ss_pred ccccccccccccCHHHHHHHHHHhccC-CccCCceEEEEechhhcCH---------------HHHHHHHHHhcC--CCcC
Confidence 00 00 00112333333322211 1124557999999999876 567999999986 6778
Q ss_pred EEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHH
Q 014376 315 VIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRS 355 (426)
Q Consensus 315 viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~ 355 (426)
+++|.+|+.++.+.+.+++|+ ..+.+++|+.++..+.+..
T Consensus 163 t~fiL~t~~~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILSRC-RQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred cEEEEEECChhhCcHHHHhcC-EEEEecCCCHHHHHHHHHH
Confidence 888888899999999999999 7899999999888887764
No 174
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.00 E-value=1.5e-08 Score=98.61 Aligned_cols=53 Identities=28% Similarity=0.465 Sum_probs=37.8
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 159 ESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 159 ~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
+.++|+.+.++..--.+. .-+.|--. |+++|+.||||||||.||-+||++||.
T Consensus 39 dG~VGQ~~AReAaGvIv~----mik~gk~a-----GrgiLi~GppgTGKTAlA~gIa~eLG~ 91 (450)
T COG1224 39 DGLVGQEEAREAAGVIVK----MIKQGKMA-----GRGILIVGPPGTGKTALAMGIARELGE 91 (450)
T ss_pred CcccchHHHHHhhhHHHH----HHHhCccc-----ccEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 458888887765332221 11122111 799999999999999999999999973
No 175
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.00 E-value=1.2e-09 Score=92.54 Aligned_cols=109 Identities=27% Similarity=0.387 Sum_probs=58.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecc------ccccc-cccchHHHHHHHHHHHHHHHHhccCc
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH------SLFSK-WFSESGKLVAKLFQKIQEMVEEENNL 268 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~------~l~~~-~~~e~~~~v~~~f~~~~~~~~~~~~~ 268 (426)
++||.|+||+|||++++++|+.++..|.+ |.+. ++.+. ++........ |.. ..--.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~R---------Iq~tpdllPsDi~G~~v~~~~~~~f~--~~~------GPif~ 63 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKR---------IQFTPDLLPSDILGFPVYDQETGEFE--FRP------GPIFT 63 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEE---------EE--TT--HHHHHEEEEEETTTTEEE--EEE-------TT-S
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeE---------EEecCCCCcccceeeeeeccCCCeeE--eec------Chhhh
Confidence 48999999999999999999999877632 3221 11110 0110000000 000 00011
Q ss_pred EEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc---------CCCcEEEEEEeCCCC-----cCCHHHhcc
Q 014376 269 VFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK---------SSPNVIILTTSNITA-----AIDIAFVDR 334 (426)
Q Consensus 269 ~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~---------~~~~viVi~TtN~~~-----~ld~al~~R 334 (426)
.++++||+....+ ++++++|+.|.+-+ -...++||+|.|..+ .++.++++|
T Consensus 64 ~ill~DEiNrapp---------------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DR 128 (131)
T PF07726_consen 64 NILLADEINRAPP---------------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDR 128 (131)
T ss_dssp SEEEEETGGGS-H---------------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTT
T ss_pred ceeeecccccCCH---------------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcc
Confidence 4899999998876 56677888777421 235699999999876 478999999
Q ss_pred cC
Q 014376 335 AD 336 (426)
Q Consensus 335 ~~ 336 (426)
|-
T Consensus 129 F~ 130 (131)
T PF07726_consen 129 FM 130 (131)
T ss_dssp SS
T ss_pred cc
Confidence 83
No 176
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.99 E-value=3.3e-09 Score=97.65 Aligned_cols=147 Identities=22% Similarity=0.260 Sum_probs=93.3
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEec
Q 014376 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (426)
Q Consensus 157 ~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (426)
.+.+++|.++..++|.-++. .|.-| +++|.||||+||||-+.++|+.+--+. ....+.++|+
T Consensus 25 ~l~dIVGNe~tv~rl~via~-------~gnmP-------~liisGpPG~GKTTsi~~LAr~LLG~~----~ke~vLELNA 86 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAK-------EGNMP-------NLIISGPPGTGKTTSILCLARELLGDS----YKEAVLELNA 86 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHH-------cCCCC-------ceEeeCCCCCchhhHHHHHHHHHhChh----hhhHhhhccC
Confidence 46789999999888876653 34333 499999999999999999999882211 1345678888
Q ss_pred cccccccccchHHHHHHHHHHHHHHHHh-----ccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcC
Q 014376 237 HSLFSKWFSESGKLVAKLFQKIQEMVEE-----ENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS 311 (426)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~~~~~~~~~-----~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~ 311 (426)
++-.+ +.-+-.+++.+... ..+..|+++||+|++... .+.++-+.|+-..
T Consensus 87 SdeRG---------IDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~g---------------AQQAlRRtMEiyS- 141 (333)
T KOG0991|consen 87 SDERG---------IDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAG---------------AQQALRRTMEIYS- 141 (333)
T ss_pred ccccc---------cHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhH---------------HHHHHHHHHHHHc-
Confidence 76422 11122222222221 234579999999999873 3344555554332
Q ss_pred CCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHH
Q 014376 312 SPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQA 348 (426)
Q Consensus 312 ~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~ 348 (426)
+.+-+..++|....+=+.+.+|+. .+.+...+..+
T Consensus 142 -~ttRFalaCN~s~KIiEPIQSRCA-iLRysklsd~q 176 (333)
T KOG0991|consen 142 -NTTRFALACNQSEKIIEPIQSRCA-ILRYSKLSDQQ 176 (333)
T ss_pred -ccchhhhhhcchhhhhhhHHhhhH-hhhhcccCHHH
Confidence 334555567888888777888884 34444444433
No 177
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=9.7e-09 Score=99.23 Aligned_cols=86 Identities=17% Similarity=0.214 Sum_probs=61.2
Q ss_pred cCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc--------CCCcEEEEEEeC----CCCcCCHHHhc
Q 014376 266 NNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK--------SSPNVIILTTSN----ITAAIDIAFVD 333 (426)
Q Consensus 266 ~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~--------~~~~viVi~TtN----~~~~ld~al~~ 333 (426)
...+|+||||||+++.+.. +|+..-....++..||-.+++-. ....+++|++.- .|.+|=|.+.+
T Consensus 249 E~~GIvFIDEIDKIa~~~~---~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQG 325 (444)
T COG1220 249 EQNGIVFIDEIDKIAKRGG---SGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQG 325 (444)
T ss_pred HhcCeEEEehhhHHHhcCC---CCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcC
Confidence 4568999999999987553 22222233456666777766431 235678887743 45566788999
Q ss_pred ccCeEEEeCCCCHHHHHHHHH
Q 014376 334 RADIKAYVGPPTLQARYEILR 354 (426)
Q Consensus 334 R~~~~i~i~~p~~~~r~~Il~ 354 (426)
||.+.+++...+.+..+.||.
T Consensus 326 RfPIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 326 RFPIRVELDALTKEDFERILT 346 (444)
T ss_pred CCceEEEcccCCHHHHHHHHc
Confidence 999999999999999998874
No 178
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.98 E-value=8.4e-09 Score=107.61 Aligned_cols=151 Identities=21% Similarity=0.221 Sum_probs=87.7
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEec
Q 014376 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (426)
Q Consensus 157 ~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (426)
-|+++.|+..+++.+.-.+ . .+.+++|+||||||||++++++++.+.... +-..+..
T Consensus 190 d~~dv~Gq~~~~~al~~aa--------~--------~g~~vlliG~pGsGKTtlar~l~~llp~~~-------~~~~le~ 246 (499)
T TIGR00368 190 DLKDIKGQQHAKRALEIAA--------A--------GGHNLLLFGPPGSGKTMLASRLQGILPPLT-------NEEAIET 246 (499)
T ss_pred CHHHhcCcHHHHhhhhhhc--------c--------CCCEEEEEecCCCCHHHHHHHHhcccCCCC-------CcEEEec
Confidence 5678888888766554332 1 256799999999999999999998773211 1111111
Q ss_pred ccccc-------------cccc-----chH-HHHHHHH-HHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhH
Q 014376 237 HSLFS-------------KWFS-----ESG-KLVAKLF-QKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSI 296 (426)
Q Consensus 237 ~~l~~-------------~~~~-----e~~-~~v~~~f-~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~ 296 (426)
..+.+ ..|. .+. ..+.... .+... + ......+|||||++.+..
T Consensus 247 ~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~-i-~lA~~GvLfLDEi~e~~~--------------- 309 (499)
T TIGR00368 247 ARIWSLVGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGE-I-SLAHNGVLFLDELPEFKR--------------- 309 (499)
T ss_pred cccccchhhhccccccccCCccccccccchhhhhCCccccchhh-h-hccCCCeEecCChhhCCH---------------
Confidence 11100 0000 000 0000000 00000 1 113558999999998754
Q ss_pred HHHHHHHHHhhhhc-----------CCCcEEEEEEeCCC------C-----------------cCCHHHhcccCeEEEeC
Q 014376 297 RVVNALLTQMDKLK-----------SSPNVIILTTSNIT------A-----------------AIDIAFVDRADIKAYVG 342 (426)
Q Consensus 297 ~~~~~ll~~ld~l~-----------~~~~viVi~TtN~~------~-----------------~ld~al~~R~~~~i~i~ 342 (426)
.+++.|+..|+.-. ...++.+|+++|.- . .+...|++|||..+.++
T Consensus 310 ~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~ 389 (499)
T TIGR00368 310 SVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVP 389 (499)
T ss_pred HHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEc
Confidence 44555666554311 12468899999863 1 36788999999999999
Q ss_pred CCCHH
Q 014376 343 PPTLQ 347 (426)
Q Consensus 343 ~p~~~ 347 (426)
.++..
T Consensus 390 ~~~~~ 394 (499)
T TIGR00368 390 LLPPE 394 (499)
T ss_pred CCCHH
Confidence 87654
No 179
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.97 E-value=6.2e-09 Score=103.83 Aligned_cols=171 Identities=23% Similarity=0.285 Sum_probs=103.6
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhccc-------ccCCCCc
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIR-------FSSRYPQ 228 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~-------~~~~~~~ 228 (426)
-.|.-++|++..|..|.--+. +| .=.++||.|+.|+||||++|+|+..|..- |.. .|+
T Consensus 14 ~pf~aivGqd~lk~aL~l~av----------~P----~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~c-dP~ 78 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAV----------DP----QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNC-DPD 78 (423)
T ss_pred cchhhhcCchHHHHHHhhhhc----------cc----ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCC-CCC
Confidence 346678889988887653321 11 12469999999999999999999999421 100 111
Q ss_pred ceEEEEecc----------c---------cccccccchHH-HHH-----HHHHHHHHHH----HhccCcEEEEEechhhH
Q 014376 229 CQLVEVNAH----------S---------LFSKWFSESGK-LVA-----KLFQKIQEMV----EEENNLVFVLIDEVESL 279 (426)
Q Consensus 229 ~~~i~i~~~----------~---------l~~~~~~e~~~-~v~-----~~f~~~~~~~----~~~~~~~illIDEid~l 279 (426)
.+. -.|. . +.....+.+.. .+. +....-.+.+ -...+..|+++||+..|
T Consensus 79 ~P~--~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL 156 (423)
T COG1239 79 DPE--EMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLL 156 (423)
T ss_pred Chh--hhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccc
Confidence 110 0000 0 00001111221 111 1111000000 01245689999999888
Q ss_pred HHHhhhhccCCCCChhHHHHHHHHHHhhh-----------hcCCCcEEEEEEeCCCCc-CCHHHhcccCeEEEeCCC-CH
Q 014376 280 AAARKAALSGSEPSDSIRVVNALLTQMDK-----------LKSSPNVIILTTSNITAA-IDIAFVDRADIKAYVGPP-TL 346 (426)
Q Consensus 280 ~~~r~~~ls~~e~~~~~~~~~~ll~~ld~-----------l~~~~~viVi~TtN~~~~-ld~al~~R~~~~i~i~~p-~~ 346 (426)
.. .+++.||+.+.. +...-++++|+|.|..+. |-+.|++||+..+.+.+| +.
T Consensus 157 ~d---------------~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~ 221 (423)
T COG1239 157 DD---------------HLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDL 221 (423)
T ss_pred cH---------------HHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCH
Confidence 65 567777777653 234567999999998754 789999999999987665 56
Q ss_pred HHHHHHHHHHHH
Q 014376 347 QARYEILRSCLQ 358 (426)
Q Consensus 347 ~~r~~Il~~~l~ 358 (426)
++|.+|+++.+.
T Consensus 222 ~~rv~Ii~r~~~ 233 (423)
T COG1239 222 EERVEIIRRRLA 233 (423)
T ss_pred HHHHHHHHHHHH
Confidence 788888877654
No 180
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.95 E-value=1.2e-08 Score=100.90 Aligned_cols=139 Identities=22% Similarity=0.332 Sum_probs=94.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccc------cCCCCcce---------EEEEeccccccccccchHHHHHHHHHHHH
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRF------SSRYPQCQ---------LVEVNAHSLFSKWFSESGKLVAKLFQKIQ 259 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~------~~~~~~~~---------~i~i~~~~l~~~~~~e~~~~v~~~f~~~~ 259 (426)
..+||+||.|+||+++|+++|+.+-..- ++.++.|. +..+...+ ++ .-....++.+.+.+.
T Consensus 25 HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~--~I~id~iR~l~~~~~ 100 (325)
T PRK06871 25 HALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NK--DIGVDQVREINEKVS 100 (325)
T ss_pred eeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CC--CCCHHHHHHHHHHHh
Confidence 5699999999999999999999985421 11111111 22221110 00 011233444433332
Q ss_pred HHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEE
Q 014376 260 EMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKA 339 (426)
Q Consensus 260 ~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i 339 (426)
... ......|++||++|.+.. ...|+||+.|++ +++++++|.+|+.++.+-+.+++|+ ..+
T Consensus 101 ~~~-~~g~~KV~iI~~a~~m~~---------------~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~SRC-~~~ 161 (325)
T PRK06871 101 QHA-QQGGNKVVYIQGAERLTE---------------AAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYSRC-QTW 161 (325)
T ss_pred hcc-ccCCceEEEEechhhhCH---------------HHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHhhc-eEE
Confidence 211 124557999999999976 567999999987 6678888888888999999999999 788
Q ss_pred EeCCCCHHHHHHHHHHH
Q 014376 340 YVGPPTLQARYEILRSC 356 (426)
Q Consensus 340 ~i~~p~~~~r~~Il~~~ 356 (426)
.+.+|+.++..+.+...
T Consensus 162 ~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQ 178 (325)
T ss_pred eCCCCCHHHHHHHHHHH
Confidence 89999998887777653
No 181
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=2.2e-08 Score=98.71 Aligned_cols=142 Identities=21% Similarity=0.234 Sum_probs=89.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccccC--------------CCCcceEEEEecccccccc-ccchHHHHHHHHHHHH
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSS--------------RYPQCQLVEVNAHSLFSKW-FSESGKLVAKLFQKIQ 259 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~--------------~~~~~~~i~i~~~~l~~~~-~~e~~~~v~~~f~~~~ 259 (426)
..+||+||+|+||+++|+++|+.+-..-.. ..|+..++......-..+. ..-....++.+.+.+.
T Consensus 27 HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~ 106 (319)
T PRK08769 27 HGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKLA 106 (319)
T ss_pred eeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHHh
Confidence 469999999999999999999988432100 1122111110110000000 0001122333333222
Q ss_pred HHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEE
Q 014376 260 EMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKA 339 (426)
Q Consensus 260 ~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i 339 (426)
.. .......|++||++|.+.. ...|+||+.|++ +.+++++|.+++.++.+-+.+++|+ ..+
T Consensus 107 ~~-p~~g~~kV~iI~~ae~m~~---------------~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrSRC-q~i 167 (319)
T PRK08769 107 LT-PQYGIAQVVIVDPADAINR---------------AACNALLKTLEE--PSPGRYLWLISAQPARLPATIRSRC-QRL 167 (319)
T ss_pred hC-cccCCcEEEEeccHhhhCH---------------HHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHhhh-eEe
Confidence 11 0123457999999999965 567999999887 4567777777788888889999999 788
Q ss_pred EeCCCCHHHHHHHHHH
Q 014376 340 YVGPPTLQARYEILRS 355 (426)
Q Consensus 340 ~i~~p~~~~r~~Il~~ 355 (426)
.+++|+.++..+.+..
T Consensus 168 ~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 168 EFKLPPAHEALAWLLA 183 (319)
T ss_pred eCCCcCHHHHHHHHHH
Confidence 8999999887777654
No 182
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.92 E-value=4.4e-09 Score=110.60 Aligned_cols=140 Identities=16% Similarity=0.196 Sum_probs=84.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccc--hHHHHHHHHHHHHHHHHhccCcEEE
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSE--SGKLVAKLFQKIQEMVEEENNLVFV 271 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e--~~~~v~~~f~~~~~~~~~~~~~~il 271 (426)
+-++||+|+||||||++++++++......+. ... ..++..+....... .+.. .++. ..+. ....+++
T Consensus 236 ~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~---~~~--~~~~~~l~~~~~~~~~~g~~---~~~~-G~l~--~A~~Gil 304 (509)
T smart00350 236 DINILLLGDPGTAKSQLLKYVEKTAPRAVYT---TGK--GSSAVGLTAAVTRDPETREF---TLEG-GALV--LADNGVC 304 (509)
T ss_pred cceEEEeCCCChhHHHHHHHHHHHcCcceEc---CCC--CCCcCCccccceEccCcceE---EecC-ccEE--ecCCCEE
Confidence 3479999999999999999999987432100 000 00111111100000 0000 0000 0000 1245799
Q ss_pred EEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc-----------CCCcEEEEEEeCCCC-------------cC
Q 014376 272 LIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK-----------SSPNVIILTTSNITA-------------AI 327 (426)
Q Consensus 272 lIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~-----------~~~~viVi~TtN~~~-------------~l 327 (426)
+|||++.+.. ..+..|+..|++-. -+..+.||+|+|+.+ .+
T Consensus 305 ~iDEi~~l~~---------------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l 369 (509)
T smart00350 305 CIDEFDKMDD---------------SDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDL 369 (509)
T ss_pred EEechhhCCH---------------HHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCC
Confidence 9999998865 33455666554311 124689999999763 47
Q ss_pred CHHHhcccCeEE-EeCCCCHHHHHHHHHHHHHH
Q 014376 328 DIAFVDRADIKA-YVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 328 d~al~~R~~~~i-~i~~p~~~~r~~Il~~~l~~ 359 (426)
++++++|||..+ ..+.|+.+...+|.++.+..
T Consensus 370 ~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~ 402 (509)
T smart00350 370 PAPILSRFDLLFVVLDEVDEERDRELAKHVVDL 402 (509)
T ss_pred ChHHhCceeeEEEecCCCChHHHHHHHHHHHHh
Confidence 899999999866 55889999999999887654
No 183
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.91 E-value=3.4e-08 Score=97.44 Aligned_cols=74 Identities=22% Similarity=0.250 Sum_probs=45.8
Q ss_pred CcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCC------------CcCCHHHhcc
Q 014376 267 NLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNIT------------AAIDIAFVDR 334 (426)
Q Consensus 267 ~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~------------~~ld~al~~R 334 (426)
-|+||||||++.|-- ..+..|-+.++. .-.-+||.+||+. .-++..|++|
T Consensus 278 vpGVLFIDEvHmLDi---------------EcFsfLnralEs---~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLDR 339 (398)
T PF06068_consen 278 VPGVLFIDEVHMLDI---------------ECFSFLNRALES---ELSPIIILATNRGITKIRGTDIISPHGIPLDLLDR 339 (398)
T ss_dssp EE-EEEEESGGGSBH---------------HHHHHHHHHHTS---TT--EEEEEES-SEEE-BTTS-EEETT--HHHHTT
T ss_pred ecceEEecchhhccH---------------HHHHHHHHHhcC---CCCcEEEEecCceeeeccCccCcCCCCCCcchHhh
Confidence 378899999886632 444555555443 2334555556743 3367899999
Q ss_pred cCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 335 ADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 335 ~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
+ .++...+++.++..+|++..+++
T Consensus 340 l-lII~t~py~~~ei~~Il~iR~~~ 363 (398)
T PF06068_consen 340 L-LIIRTKPYSEEEIKQILKIRAKE 363 (398)
T ss_dssp E-EEEEE----HHHHHHHHHHHHHH
T ss_pred c-EEEECCCCCHHHHHHHHHhhhhh
Confidence 8 88899999999999999988877
No 184
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.91 E-value=8.1e-09 Score=107.42 Aligned_cols=131 Identities=20% Similarity=0.252 Sum_probs=77.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccc-------------ccccc---c--h-HHHHHH
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLF-------------SKWFS---E--S-GKLVAK 253 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~-------------~~~~~---e--~-~~~v~~ 253 (426)
.+.+++|+||||+|||++++.+++.+...- +-..+....+. ...|. . + ...+..
T Consensus 209 ~G~~llliG~~GsGKTtLak~L~gllpp~~-------g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GG 281 (506)
T PRK09862 209 GGHNLLLIGPPGTGKTMLASRINGLLPDLS-------NEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGG 281 (506)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhccCCCCC-------CcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCC
Confidence 368899999999999999999999874321 11112111111 01110 0 0 001100
Q ss_pred HH-HHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhh-----------cCCCcEEEEEEe
Q 014376 254 LF-QKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL-----------KSSPNVIILTTS 321 (426)
Q Consensus 254 ~f-~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l-----------~~~~~viVi~Tt 321 (426)
-. ...- .+ ...+..++|+||++.+.. ..+..|++.|+.- ....++.+|+|+
T Consensus 282 g~~~~pG-~l-~~A~gGvLfLDEi~e~~~---------------~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~ 344 (506)
T PRK09862 282 GAIPGPG-EI-SLAHNGVLFLDELPEFER---------------RTLDALREPIESGQIHLSRTRAKITYPARFQLVAAM 344 (506)
T ss_pred Cceehhh-Hh-hhccCCEEecCCchhCCH---------------HHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEee
Confidence 00 0000 11 113558999999987654 4555666655421 123568999999
Q ss_pred CCCC---------------------cCCHHHhcccCeEEEeCCCCHH
Q 014376 322 NITA---------------------AIDIAFVDRADIKAYVGPPTLQ 347 (426)
Q Consensus 322 N~~~---------------------~ld~al~~R~~~~i~i~~p~~~ 347 (426)
|... .+..++++|||..+.+++++.+
T Consensus 345 NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 345 NPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred cCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 9753 3677999999999999988543
No 185
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.8e-08 Score=108.32 Aligned_cols=184 Identities=20% Similarity=0.302 Sum_probs=127.3
Q ss_pred ccccccchhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhccccc-CCCC
Q 014376 149 LPAKEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS-SRYP 227 (426)
Q Consensus 149 lp~~~~~~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~-~~~~ 227 (426)
+....-++..|-++|.++-.+++.+.+.+ +...+ -+|.|+||+|||.++..+|+..-..-. ....
T Consensus 160 lt~~Ar~gklDPvIGRd~EI~r~iqIL~R-----R~KNN---------PvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~ 225 (786)
T COG0542 160 LTELAREGKLDPVIGRDEEIRRTIQILSR-----RTKNN---------PVLVGEPGVGKTAIVEGLAQRIVNGDVPESLK 225 (786)
T ss_pred hHHHHhcCCCCCCcChHHHHHHHHHHHhc-----cCCCC---------CeEecCCCCCHHHHHHHHHHHHhcCCCCHHHc
Confidence 33444557788899998877777765432 22333 488999999999999999999843210 0113
Q ss_pred cceEEEEeccccc--cccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHH
Q 014376 228 QCQLVEVNAHSLF--SKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQ 305 (426)
Q Consensus 228 ~~~~i~i~~~~l~--~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ 305 (426)
+..++.++-..+. .+|-|+.+..+..+.+.+.. ..+.||||||++.+...... .| . +....|-|--.
T Consensus 226 ~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~-----~~~vILFIDEiHtiVGAG~~--~G---~-a~DAaNiLKPa 294 (786)
T COG0542 226 DKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEK-----SKNVILFIDEIHTIVGAGAT--EG---G-AMDAANLLKPA 294 (786)
T ss_pred CCEEEEecHHHHhccccccCcHHHHHHHHHHHHhc-----CCCeEEEEechhhhcCCCcc--cc---c-ccchhhhhHHH
Confidence 4567777776665 46778888888888888776 34899999999999864321 11 1 33444544444
Q ss_pred hhhhcCCCcEEEEEEeCCCCc-----CCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHHHHH
Q 014376 306 MDKLKSSPNVIILTTSNITAA-----IDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIR 362 (426)
Q Consensus 306 ld~l~~~~~viVi~TtN~~~~-----ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~l~~ 362 (426)
|. .+.+-+|++|...+. -|.||-+|| ..+++..|+.++-..|++..-...-.
T Consensus 295 LA----RGeL~~IGATT~~EYRk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~yE~ 351 (786)
T COG0542 295 LA----RGELRCIGATTLDEYRKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKERYEA 351 (786)
T ss_pred Hh----cCCeEEEEeccHHHHHHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHHHH
Confidence 32 356666666654432 299999999 68889999999999999877666544
No 186
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.90 E-value=1.7e-08 Score=100.49 Aligned_cols=142 Identities=20% Similarity=0.288 Sum_probs=93.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccc------cCCCCcceEEEEecccccccccc------chHHHHHHHHHHHHHHH
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRF------SSRYPQCQLVEVNAHSLFSKWFS------ESGKLVAKLFQKIQEMV 262 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~------~~~~~~~~~i~i~~~~l~~~~~~------e~~~~v~~~f~~~~~~~ 262 (426)
..+||+||+|+||+++|+++|+.+-..- ++.++.|..+.-..|--+..... -....++.+-+.+....
T Consensus 25 HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~~ 104 (334)
T PRK07993 25 HALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYEHA 104 (334)
T ss_pred eEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHhhcc
Confidence 5799999999999999999999984321 11111111111111100000000 11223333333322211
Q ss_pred HhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeC
Q 014376 263 EEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVG 342 (426)
Q Consensus 263 ~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~ 342 (426)
......|++||++|.+.. ...|+||+.|++ +.+++++|.+++.++.+-+.+++|+. .+.++
T Consensus 105 -~~g~~kV~iI~~ae~m~~---------------~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrSRCq-~~~~~ 165 (334)
T PRK07993 105 -RLGGAKVVWLPDAALLTD---------------AAANALLKTLEE--PPENTWFFLACREPARLLATLRSRCR-LHYLA 165 (334)
T ss_pred -ccCCceEEEEcchHhhCH---------------HHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHhccc-cccCC
Confidence 124568999999999976 567999999987 66788888888889999999999995 67999
Q ss_pred CCCHHHHHHHHHH
Q 014376 343 PPTLQARYEILRS 355 (426)
Q Consensus 343 ~p~~~~r~~Il~~ 355 (426)
+|+.++..+.+..
T Consensus 166 ~~~~~~~~~~L~~ 178 (334)
T PRK07993 166 PPPEQYALTWLSR 178 (334)
T ss_pred CCCHHHHHHHHHH
Confidence 9998888777654
No 187
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.89 E-value=6.3e-08 Score=103.65 Aligned_cols=50 Identities=32% Similarity=0.411 Sum_probs=42.3
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
.+|++++|++++++.+...+.. +++++|+||||||||++++++++.++..
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~~----------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAKQ----------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHHc----------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 5899999999999887766542 3469999999999999999999999643
No 188
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.2e-08 Score=103.48 Aligned_cols=139 Identities=27% Similarity=0.405 Sum_probs=98.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEec-cccccccccchH--HHHHHHHHHHHHHHHhccCcEEE
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA-HSLFSKWFSESG--KLVAKLFQKIQEMVEEENNLVFV 271 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~-~~l~~~~~~e~~--~~v~~~f~~~~~~~~~~~~~~il 271 (426)
..+||+||||+|||+||-.+|.....|| +.+-+ .++.+ ++|+. ..+.++|..++. ....|+
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPF---------vKiiSpe~miG--~sEsaKc~~i~k~F~DAYk-----S~lsii 602 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPF---------VKIISPEDMIG--LSESAKCAHIKKIFEDAYK-----SPLSII 602 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCe---------EEEeChHHccC--ccHHHHHHHHHHHHHHhhc-----CcceEE
Confidence 4699999999999999999999887666 54443 34433 34444 357888888876 567899
Q ss_pred EEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCC-cEEEEEEeCCCCcC-CHHHhcccCeEEEeCCCCH-HH
Q 014376 272 LIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSP-NVIILTTSNITAAI-DIAFVDRADIKAYVGPPTL-QA 348 (426)
Q Consensus 272 lIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~-~viVi~TtN~~~~l-d~al~~R~~~~i~i~~p~~-~~ 348 (426)
++|+++.|..-. .-.|..+..+..+|+-.+.+.-+.+ +.+|++||...+.+ +-.+.+.|+-.+++|..+. ++
T Consensus 603 vvDdiErLiD~v-----pIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~ 677 (744)
T KOG0741|consen 603 VVDDIERLLDYV-----PIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQ 677 (744)
T ss_pred EEcchhhhhccc-----ccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHH
Confidence 999999997632 2234555667777777766543333 58888888776655 4456688999999998766 45
Q ss_pred HHHHHH
Q 014376 349 RYEILR 354 (426)
Q Consensus 349 r~~Il~ 354 (426)
..+++.
T Consensus 678 ~~~vl~ 683 (744)
T KOG0741|consen 678 LLEVLE 683 (744)
T ss_pred HHHHHH
Confidence 555543
No 189
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.87 E-value=4.7e-08 Score=97.19 Aligned_cols=166 Identities=19% Similarity=0.167 Sum_probs=103.5
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEec
Q 014376 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (426)
Q Consensus 157 ~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (426)
.+++++|....-+.+.+.+.... ..+ ..|+|+|++||||+++|++|..... ..+.+++.++|
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a---~~~---------~pVlI~GE~GtGK~~lA~~iH~~s~------r~~~pfv~v~c 65 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLA---PLD---------KPVLIIGERGTGKELIASRLHYLSS------RWQGPFISLNC 65 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHh---CCC---------CCEEEECCCCCcHHHHHHHHHHhCC------ccCCCeEEEeC
Confidence 35678888877777776665432 222 3499999999999999999986542 24567899999
Q ss_pred cccccccccchHHHHHHHHHHH-----------HHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHH
Q 014376 237 HSLFSKWFSESGKLVAKLFQKI-----------QEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQ 305 (426)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~~~-----------~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ 305 (426)
..+... ..-..+|... ...++ ....+.|+|||++.|.. ..+..|+..
T Consensus 66 ~~~~~~------~~~~~lfg~~~~~~~g~~~~~~g~l~-~a~gGtL~l~~i~~L~~---------------~~Q~~L~~~ 123 (326)
T PRK11608 66 AALNEN------LLDSELFGHEAGAFTGAQKRHPGRFE-RADGGTLFLDELATAPM---------------LVQEKLLRV 123 (326)
T ss_pred CCCCHH------HHHHHHccccccccCCcccccCCchh-ccCCCeEEeCChhhCCH---------------HHHHHHHHH
Confidence 876311 1111122111 00111 13457899999999876 345566666
Q ss_pred hhhhc--C-------CCcEEEEEEeCCC-------CcCCHHHhccc-CeEEEeCCCCH--HHHHHHHHHHHHHHHH
Q 014376 306 MDKLK--S-------SPNVIILTTSNIT-------AAIDIAFVDRA-DIKAYVGPPTL--QARYEILRSCLQELIR 362 (426)
Q Consensus 306 ld~l~--~-------~~~viVi~TtN~~-------~~ld~al~~R~-~~~i~i~~p~~--~~r~~Il~~~l~~l~~ 362 (426)
++.-. . ..++.||+|++.. ..+...+..|+ ...+.+|+... ++...++++++.+...
T Consensus 124 l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~ 199 (326)
T PRK11608 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCR 199 (326)
T ss_pred HhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHH
Confidence 54311 1 1247777777654 34567788888 45677777654 3556677777777543
No 190
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=6.3e-09 Score=103.31 Aligned_cols=139 Identities=28% Similarity=0.411 Sum_probs=93.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccccc-ccccch-HHHHHHHHHHHHHHHHhccCcEEEE
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFS-KWFSES-GKLVAKLFQKIQEMVEEENNLVFVL 272 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~-~~~~e~-~~~v~~~f~~~~~~~~~~~~~~ill 272 (426)
.+|||.||+|+|||.|++.||+.++.|| ...+|..|.. .|+|+. +..+.++.+.+.-.++. ....|+|
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPf---------aIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVek-AQqGIVf 296 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPF---------AICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEK-AQQGIVF 296 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCe---------EEecccchhhcccccccHHHHHHHHHHHccCCHHH-HhcCeEE
Confidence 4699999999999999999999998887 8888988874 566664 33455666655443333 3558999
Q ss_pred EechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhh-----------cCCCcEEEEEEeCCCCc-------CCHHHhcc
Q 014376 273 IDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL-----------KSSPNVIILTTSNITAA-------IDIAFVDR 334 (426)
Q Consensus 273 IDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l-----------~~~~~viVi~TtN~~~~-------ld~al~~R 334 (426)
|||+|++..+..+ +...-+-....++..||..+++- ..++..+.|-|+|.... ||..+.+|
T Consensus 297 lDEvDKi~~~~~~-i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR 375 (564)
T KOG0745|consen 297 LDEVDKITKKAES-IHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRR 375 (564)
T ss_pred EehhhhhcccCcc-ccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHh
Confidence 9999999854322 22222223357889999998843 12244666666665533 45555566
Q ss_pred c-CeEEEeCCC
Q 014376 335 A-DIKAYVGPP 344 (426)
Q Consensus 335 ~-~~~i~i~~p 344 (426)
. +..+-|+.|
T Consensus 376 ~~d~slGFg~~ 386 (564)
T KOG0745|consen 376 LDDKSLGFGAP 386 (564)
T ss_pred hcchhcccCCC
Confidence 5 345567777
No 191
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.87 E-value=9.5e-08 Score=95.05 Aligned_cols=140 Identities=21% Similarity=0.207 Sum_probs=88.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHH-----------HHHH
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQ-----------EMVE 263 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~-----------~~~~ 263 (426)
..|||+|++||||+++|++|..... ..+.+++.+||..+.... .-..+|...+ .+++
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~~s~------r~~~pfv~vnc~~~~~~~------l~~~lfG~~~g~~~ga~~~~~G~~~ 90 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSK------RWQGPLVKLNCAALSENL------LDSELFGHEAGAFTGAQKRHQGRFE 90 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHHhcC------ccCCCeEEEeCCCCChHH------HHHHHhccccccccCcccccCCchh
Confidence 3499999999999999999987653 245678999998763211 1112222110 0111
Q ss_pred hccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc---------CCCcEEEEEEeCCC-------CcC
Q 014376 264 EENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK---------SSPNVIILTTSNIT-------AAI 327 (426)
Q Consensus 264 ~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~---------~~~~viVi~TtN~~-------~~l 327 (426)
....+.||||||+.|.. ..+..|+..++.-. ...++.+|++||.. ..+
T Consensus 91 -~a~gGtL~Ldei~~L~~---------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~f 154 (329)
T TIGR02974 91 -RADGGTLFLDELATASL---------------LVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRF 154 (329)
T ss_pred -hCCCCEEEeCChHhCCH---------------HHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCch
Confidence 13457899999998876 34556666665321 12346778887754 235
Q ss_pred CHHHhcccC-eEEEeCCCC--HHHHHHHHHHHHHHHHH
Q 014376 328 DIAFVDRAD-IKAYVGPPT--LQARYEILRSCLQELIR 362 (426)
Q Consensus 328 d~al~~R~~-~~i~i~~p~--~~~r~~Il~~~l~~l~~ 362 (426)
.+.|..|+. ..|.+|+.. .++...++++++.+...
T Consensus 155 r~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~ 192 (329)
T TIGR02974 155 RADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMAR 192 (329)
T ss_pred HHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHH
Confidence 677788884 456666665 34566677777776544
No 192
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.86 E-value=7.7e-08 Score=90.85 Aligned_cols=171 Identities=21% Similarity=0.297 Sum_probs=104.4
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHh-cccccC-------C-CCc
Q 014376 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKL-SIRFSS-------R-YPQ 228 (426)
Q Consensus 158 ~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l-~~~~~~-------~-~~~ 228 (426)
++.+.+.++....|+.+.. ...++ ++++|||+|+||-|.+.++.+++ |..... . .|.
T Consensus 12 l~~l~~~~e~~~~Lksl~~------~~d~P--------Hll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS 77 (351)
T KOG2035|consen 12 LDELIYHEELANLLKSLSS------TGDFP--------HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPS 77 (351)
T ss_pred hhhcccHHHHHHHHHHhcc------cCCCC--------eEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCC
Confidence 4557777777777776532 11222 59999999999999999998887 211000 0 011
Q ss_pred ceEEEEecc---ccccccccchHHHHHHHHHH-HHHHH-------HhccCcEEEEEechhhHHHHhhhhccCCCCChhHH
Q 014376 229 CQLVEVNAH---SLFSKWFSESGKLVAKLFQK-IQEMV-------EEENNLVFVLIDEVESLAAARKAALSGSEPSDSIR 297 (426)
Q Consensus 229 ~~~i~i~~~---~l~~~~~~e~~~~v~~~f~~-~~~~~-------~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~ 297 (426)
.+-++++.- .-..-.++..|..-+.+.|. ++++. .......+++|-|+|.|.. +
T Consensus 78 ~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~---------------d 142 (351)
T KOG2035|consen 78 KKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTR---------------D 142 (351)
T ss_pred CceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhH---------------H
Confidence 111222211 00000011112111222222 11111 1223567999999999987 4
Q ss_pred HHHHHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHHH
Q 014376 298 VVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQEL 360 (426)
Q Consensus 298 ~~~~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~l 360 (426)
.+.+|-+.|+... +++-+|...|....+-+++++|+ ..+.++.|+.++...++...+++.
T Consensus 143 AQ~aLRRTMEkYs--~~~RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE 202 (351)
T KOG2035|consen 143 AQHALRRTMEKYS--SNCRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKE 202 (351)
T ss_pred HHHHHHHHHHHHh--cCceEEEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHh
Confidence 5566777777653 45566666788888889999998 889999999999999998888763
No 193
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.85 E-value=2.8e-08 Score=93.07 Aligned_cols=31 Identities=29% Similarity=0.451 Sum_probs=28.4
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|||||||.|.+|+...
T Consensus 24 L~v~~GEfvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 24 LSVEKGEFVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred eEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5677899999999999999999999999884
No 194
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.83 E-value=3.3e-09 Score=97.00 Aligned_cols=117 Identities=24% Similarity=0.320 Sum_probs=77.5
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccccccc-ccchHHHHHHHHHH----------
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKW-FSESGKLVAKLFQK---------- 257 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~-~~e~~~~v~~~f~~---------- 257 (426)
+.+..|..+.|+||+|||||||+|+|...- .++.+.+.+++..+..+. .....+.+..+||.
T Consensus 23 l~v~~Gevv~iiGpSGSGKSTlLRclN~LE-------~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvl 95 (240)
T COG1126 23 LSVEKGEVVVIIGPSGSGKSTLLRCLNGLE-------EPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVL 95 (240)
T ss_pred eeEcCCCEEEEECCCCCCHHHHHHHHHCCc-------CCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHH
Confidence 567889999999999999999999998876 345666778775442210 11111122222221
Q ss_pred ---------------------HHHHHH----------------------------hccCcEEEEEechhhHHHHhhhhcc
Q 014376 258 ---------------------IQEMVE----------------------------EENNLVFVLIDEVESLAAARKAALS 288 (426)
Q Consensus 258 ---------------------~~~~~~----------------------------~~~~~~illIDEid~l~~~r~~~ls 288 (426)
+.++++ -...|.++++||..+.
T Consensus 96 eNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSA--------- 166 (240)
T COG1126 96 ENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSA--------- 166 (240)
T ss_pred HHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCccc---------
Confidence 111111 1245778888885433
Q ss_pred CCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCc
Q 014376 289 GSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAA 326 (426)
Q Consensus 289 ~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~ 326 (426)
.++..+..++..|..+...+.++++.||...-+
T Consensus 167 -----LDPElv~EVL~vm~~LA~eGmTMivVTHEM~FA 199 (240)
T COG1126 167 -----LDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFA 199 (240)
T ss_pred -----CCHHHHHHHHHHHHHHHHcCCeEEEEechhHHH
Confidence 345788999999999999999999999976443
No 195
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.81 E-value=7.2e-08 Score=95.06 Aligned_cols=139 Identities=19% Similarity=0.286 Sum_probs=92.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccc-----cCCCCcce---------EEEEeccccccccccchHHHHHHHHHHHHH
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRF-----SSRYPQCQ---------LVEVNAHSLFSKWFSESGKLVAKLFQKIQE 260 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~-----~~~~~~~~---------~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~ 260 (426)
..+||+||.|+||+++|+.+|+.+-..- ++....|. +..+....- ++. -....++.+-+.+..
T Consensus 26 hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~~--I~vdqiR~l~~~~~~ 102 (319)
T PRK06090 26 GALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKE-GKS--ITVEQIRQCNRLAQE 102 (319)
T ss_pred eeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcC-CCc--CCHHHHHHHHHHHhh
Confidence 5699999999999999999999884321 11111111 222211100 000 112233333222221
Q ss_pred HHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEE
Q 014376 261 MVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAY 340 (426)
Q Consensus 261 ~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~ 340 (426)
. .......|++||++|.+.. ...|+||+.+++ +.+++++|.+|+.++.+-+.+++|+ ..+.
T Consensus 103 ~-~~~~~~kV~iI~~ae~m~~---------------~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~SRC-q~~~ 163 (319)
T PRK06090 103 S-SQLNGYRLFVIEPADAMNE---------------SASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVSRC-QQWV 163 (319)
T ss_pred C-cccCCceEEEecchhhhCH---------------HHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHhcc-eeEe
Confidence 1 1123457999999999975 567999999987 5677888888888898989999999 6889
Q ss_pred eCCCCHHHHHHHHHH
Q 014376 341 VGPPTLQARYEILRS 355 (426)
Q Consensus 341 i~~p~~~~r~~Il~~ 355 (426)
+++|+.++..+.+..
T Consensus 164 ~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 164 VTPPSTAQAMQWLKG 178 (319)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999888777654
No 196
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.81 E-value=1.1e-07 Score=100.72 Aligned_cols=168 Identities=20% Similarity=0.260 Sum_probs=107.2
Q ss_pred chhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEE
Q 014376 155 DGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEV 234 (426)
Q Consensus 155 ~~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i 234 (426)
.+.++.++|....-+++.+.+.... .. +..|+|+|++|||||++|++|..... ..+..++.+
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a---~~---------~~pvli~Ge~GtGK~~lA~~ih~~s~------r~~~pfv~i 253 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVA---RS---------NSTVLLRGESGTGKELIAKAIHYLSP------RAKRPFVKV 253 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHh---Cc---------CCCEEEECCCCccHHHHHHHHHHhCC------CCCCCeEEe
Confidence 3567788998887777776665422 22 23499999999999999999998753 235678999
Q ss_pred eccccccccccchHHHHHHHHHHHHH-----------HHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHH
Q 014376 235 NAHSLFSKWFSESGKLVAKLFQKIQE-----------MVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALL 303 (426)
Q Consensus 235 ~~~~l~~~~~~e~~~~v~~~f~~~~~-----------~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll 303 (426)
||..+...+ .-..+|...+. .++ ....+.||||||+.+.. ..+..|+
T Consensus 254 ~c~~~~~~~------~~~~lfg~~~~~~~~~~~~~~g~~~-~a~~GtL~ldei~~L~~---------------~~Q~~Ll 311 (534)
T TIGR01817 254 NCAALSETL------LESELFGHEKGAFTGAIAQRKGRFE-LADGGTLFLDEIGEISP---------------AFQAKLL 311 (534)
T ss_pred ecCCCCHHH------HHHHHcCCCCCccCCCCcCCCCccc-ccCCCeEEEechhhCCH---------------HHHHHHH
Confidence 998763211 11122221100 011 13457899999999866 3456666
Q ss_pred HHhhhhc--C-------CCcEEEEEEeCCC-------CcCCHHHhcccC-eEEEeCCCC--HHHHHHHHHHHHHHHHH
Q 014376 304 TQMDKLK--S-------SPNVIILTTSNIT-------AAIDIAFVDRAD-IKAYVGPPT--LQARYEILRSCLQELIR 362 (426)
Q Consensus 304 ~~ld~l~--~-------~~~viVi~TtN~~-------~~ld~al~~R~~-~~i~i~~p~--~~~r~~Il~~~l~~l~~ 362 (426)
..++.-. . ..++.+|+||+.. ..+.+.|..|+. ..+.+|+.. .++...++++++.+...
T Consensus 312 ~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~ 389 (534)
T TIGR01817 312 RVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNR 389 (534)
T ss_pred HHHhcCcEEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHH
Confidence 6665311 1 1246777777654 235667777774 467787776 35667788888887654
No 197
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.79 E-value=2.1e-08 Score=93.79 Aligned_cols=46 Identities=20% Similarity=0.411 Sum_probs=39.5
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccccc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFS 241 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~ 241 (426)
+.|+.|..+.|.||+||||||+.|+|.+.+ .|..+.+.+++.++.+
T Consensus 22 l~I~~gef~vliGpSGsGKTTtLkMINrLi-------ept~G~I~i~g~~i~~ 67 (309)
T COG1125 22 LTIEEGEFLVLIGPSGSGKTTTLKMINRLI-------EPTSGEILIDGEDISD 67 (309)
T ss_pred EEecCCeEEEEECCCCCcHHHHHHHHhccc-------CCCCceEEECCeeccc
Confidence 567889999999999999999999999988 5667778888877654
No 198
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.78 E-value=7.3e-08 Score=102.85 Aligned_cols=181 Identities=13% Similarity=0.178 Sum_probs=99.2
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCC-C-cceEEE-
Q 014376 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRY-P-QCQLVE- 233 (426)
Q Consensus 157 ~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~-~-~~~~i~- 233 (426)
.++++++++...+.+..++.... .+. ..++.++|+||||+||||+++++|+.++..+..-. + .+....
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~----~~~-----~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~ 152 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQV----LEN-----APKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKN 152 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhcc----ccc-----CCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccccc
Confidence 46789999988888877765321 111 22577999999999999999999999976542100 0 000000
Q ss_pred --Eeccccccc--cccchHHHHHHHHHHHHHHHH-----hccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHH
Q 014376 234 --VNAHSLFSK--WFSESGKLVAKLFQKIQEMVE-----EENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLT 304 (426)
Q Consensus 234 --i~~~~l~~~--~~~e~~~~v~~~f~~~~~~~~-----~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~ 304 (426)
.....+... .+......+..+...+..... ......||+|||++.+..... ..+..++.
T Consensus 153 ~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~------------~~lq~lLr 220 (637)
T TIGR00602 153 DHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDT------------RALHEILR 220 (637)
T ss_pred ccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhH------------HHHHHHHH
Confidence 000000000 011222333444443332110 123567999999998765211 23344444
Q ss_pred -HhhhhcCCCcEEEEEEeCCCC--------------cCCHHHhcccC-eEEEeCCCCHHHHHHHHHHHHHHH
Q 014376 305 -QMDKLKSSPNVIILTTSNITA--------------AIDIAFVDRAD-IKAYVGPPTLQARYEILRSCLQEL 360 (426)
Q Consensus 305 -~ld~l~~~~~viVi~TtN~~~--------------~ld~al~~R~~-~~i~i~~p~~~~r~~Il~~~l~~l 360 (426)
...+ .....+|++++..+. .+.++++++.. .+|.|.+.......+.|+..+...
T Consensus 221 ~~~~e--~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E 290 (637)
T TIGR00602 221 WKYVS--IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIE 290 (637)
T ss_pred HHhhc--CCCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhh
Confidence 2211 222234444442221 13367776332 468999999999888888888653
No 199
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.78 E-value=1.8e-08 Score=96.87 Aligned_cols=168 Identities=24% Similarity=0.246 Sum_probs=106.3
Q ss_pred ccccchhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcce
Q 014376 151 AKEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQ 230 (426)
Q Consensus 151 ~~~~~~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~ 230 (426)
.+-.....+++++++++-..+.++. +.+. -.+.|+|||||+|||+...+.|..+..+. .+...
T Consensus 33 ekyrP~~l~dv~~~~ei~st~~~~~---------~~~~-----lPh~L~YgPPGtGktsti~a~a~~ly~~~---~~~~m 95 (360)
T KOG0990|consen 33 EKYRPPFLGIVIKQEPIWSTENRYS---------GMPG-----LPHLLFYGPPGTGKTSTILANARDFYSPH---PTTSM 95 (360)
T ss_pred cCCCCchhhhHhcCCchhhHHHHhc---------cCCC-----CCcccccCCCCCCCCCchhhhhhhhcCCC---CchhH
Confidence 3334456778899988888777762 2211 12699999999999999999999984321 12233
Q ss_pred EEEEeccccccccccchHHHHHHHHHHHHH--HHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhh
Q 014376 231 LVEVNAHSLFSKWFSESGKLVAKLFQKIQE--MVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK 308 (426)
Q Consensus 231 ~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~--~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~ 308 (426)
+.++|+++-.+. ...+.-.+.|+..+. .+.....+..+++||+|.+.. ..+|+|-+.+.+
T Consensus 96 ~lelnaSd~rgi---d~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~---------------~AQnALRRviek 157 (360)
T KOG0990|consen 96 LLELNASDDRGI---DPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTR---------------DAQNALRRVIEK 157 (360)
T ss_pred HHHhhccCccCC---cchHHHHHHHHhhccceeccccCceeEEEecchhHhhH---------------HHHHHHHHHHHH
Confidence 455565553321 112223344444442 111123678999999999886 456777776665
Q ss_pred hcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHH
Q 014376 309 LKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSC 356 (426)
Q Consensus 309 l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~ 356 (426)
+. .++.|...+|.+..+.+++++||. .+.+.+.+.......+.+.
T Consensus 158 ~t--~n~rF~ii~n~~~ki~pa~qsRct-rfrf~pl~~~~~~~r~shi 202 (360)
T KOG0990|consen 158 YT--ANTRFATISNPPQKIHPAQQSRCT-RFRFAPLTMAQQTERQSHI 202 (360)
T ss_pred hc--cceEEEEeccChhhcCchhhcccc-cCCCCCCChhhhhhHHHHH
Confidence 54 455555667999999999999984 5556666655544444443
No 200
>PRK04132 replication factor C small subunit; Provisional
Probab=98.77 E-value=5.2e-08 Score=106.58 Aligned_cols=135 Identities=19% Similarity=0.167 Sum_probs=96.6
Q ss_pred EEEEEc--CCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhc-cCcEEEE
Q 014376 196 IVLLHG--PPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEE-NNLVFVL 272 (426)
Q Consensus 196 ~vLL~G--PpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~-~~~~ill 272 (426)
.-+..| |++.||||+|+++|+.+... ..+..++++|+++..+ ...++.+...+....... ....|++
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~----~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvI 635 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGE----NWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIF 635 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcc----cccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEE
Confidence 345668 99999999999999997211 1134579999987432 223444333322211101 1347999
Q ss_pred EechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHH
Q 014376 273 IDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEI 352 (426)
Q Consensus 273 IDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~I 352 (426)
|||+|.+.. ..+++|+..|+. ..+++.+|.++|.+..+-+++++|| ..+.|++|+.++....
T Consensus 636 IDEaD~Lt~---------------~AQnALLk~lEe--p~~~~~FILi~N~~~kIi~tIrSRC-~~i~F~~ls~~~i~~~ 697 (846)
T PRK04132 636 LDEADALTQ---------------DAQQALRRTMEM--FSSNVRFILSCNYSSKIIEPIQSRC-AIFRFRPLRDEDIAKR 697 (846)
T ss_pred EECcccCCH---------------HHHHHHHHHhhC--CCCCeEEEEEeCChhhCchHHhhhc-eEEeCCCCCHHHHHHH
Confidence 999999965 456889988876 3467888888999999999999998 7889999999888877
Q ss_pred HHHHHH
Q 014376 353 LRSCLQ 358 (426)
Q Consensus 353 l~~~l~ 358 (426)
++..++
T Consensus 698 L~~I~~ 703 (846)
T PRK04132 698 LRYIAE 703 (846)
T ss_pred HHHHHH
Confidence 776654
No 201
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.77 E-value=1.3e-07 Score=95.08 Aligned_cols=174 Identities=17% Similarity=0.174 Sum_probs=110.8
Q ss_pred chhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEE
Q 014376 155 DGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEV 234 (426)
Q Consensus 155 ~~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i 234 (426)
...+++|+|....-+++.+.++. ++.. +..||++|++||||+.+|+.|...... .+..++|.+
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~---~ap~---------~~~vLi~GetGtGKel~A~~iH~~s~r-----~~~~PFI~~ 136 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKA---YAPS---------GLPVLIIGETGTGKELFARLIHALSAR-----RAEAPFIAF 136 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHh---hCCC---------CCcEEEecCCCccHHHHHHHHHHhhhc-----ccCCCEEEE
Confidence 35678899998887777777764 4433 455999999999999999999944322 167889999
Q ss_pred eccccccccccchHHHHHHHHHHHHHHHH----------hccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHH
Q 014376 235 NAHSLFSKWFSESGKLVAKLFQKIQEMVE----------EENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLT 304 (426)
Q Consensus 235 ~~~~l~~~~~~e~~~~v~~~f~~~~~~~~----------~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~ 304 (426)
||..+.... . ...+|...+..+. +....+.||+|||..+.. ..+..+++
T Consensus 137 NCa~~~en~-----~-~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~---------------~~Q~kLl~ 195 (403)
T COG1221 137 NCAAYSENL-----Q-EAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPP---------------EGQEKLLR 195 (403)
T ss_pred EHHHhCcCH-----H-HHHHhccccceeecccCCcCchheecCCCEEehhhhhhCCH---------------hHHHHHHH
Confidence 998864321 1 1113332221111 123568999999998866 45566778
Q ss_pred Hhhhh-----c----CCCcEEEEEEeCCC--CcCCH--HHhc-ccCeEEEeCCCCH--HHHHHHHHHHHHHHHHhCcc
Q 014376 305 QMDKL-----K----SSPNVIILTTSNIT--AAIDI--AFVD-RADIKAYVGPPTL--QARYEILRSCLQELIRTGII 366 (426)
Q Consensus 305 ~ld~l-----~----~~~~viVi~TtN~~--~~ld~--al~~-R~~~~i~i~~p~~--~~r~~Il~~~l~~l~~~~~i 366 (426)
.|+.- - ...++.++++||.. +.+-. .|.+ |+...|.+|+... .++..++++++....+....
T Consensus 196 ~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~ 273 (403)
T COG1221 196 VLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGL 273 (403)
T ss_pred HHHcCceEecCCCCCcCCCceeeeccccCHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCC
Confidence 77752 1 12356666666532 22222 4444 6667777777654 45566777888877665443
No 202
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.75 E-value=4e-08 Score=97.47 Aligned_cols=143 Identities=20% Similarity=0.259 Sum_probs=88.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccc-------cCCCCcc---------eEEEEecccc---cccc-ccchHHHHHH
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRF-------SSRYPQC---------QLVEVNAHSL---FSKW-FSESGKLVAK 253 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~-------~~~~~~~---------~~i~i~~~~l---~~~~-~~e~~~~v~~ 253 (426)
+..+||+||+|+|||++|+.+|+.+...- ++.++.| .++++....- .++. -.-.-..++.
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~ 100 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVRE 100 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHHH
Confidence 35699999999999999999999985321 1111111 2333332110 0000 0012234454
Q ss_pred HHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhc
Q 014376 254 LFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVD 333 (426)
Q Consensus 254 ~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~ 333 (426)
+.+.+.... ......|++||+++.+.. ...+.+++.++... .+.++|+ +|+.+..+.+.+.+
T Consensus 101 l~~~~~~~p-~~~~~kV~iiEp~~~Ld~---------------~a~naLLk~LEep~-~~~~~Il-vth~~~~ll~ti~S 162 (325)
T PRK08699 101 IIDNVYLTS-VRGGLRVILIHPAESMNL---------------QAANSLLKVLEEPP-PQVVFLL-VSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHhhCc-ccCCceEEEEechhhCCH---------------HHHHHHHHHHHhCc-CCCEEEE-EeCChHhChHHHHH
Confidence 444433211 124457888999988865 56788999888763 2344555 45555677789999
Q ss_pred ccCeEEEeCCCCHHHHHHHHHH
Q 014376 334 RADIKAYVGPPTLQARYEILRS 355 (426)
Q Consensus 334 R~~~~i~i~~p~~~~r~~Il~~ 355 (426)
|+ ..+.+++|+.++..+.+..
T Consensus 163 Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred Hh-hhhcCCCCCHHHHHHHHHh
Confidence 98 7888999999887776653
No 203
>PF05729 NACHT: NACHT domain
Probab=98.74 E-value=2.2e-07 Score=81.99 Aligned_cols=155 Identities=19% Similarity=0.259 Sum_probs=79.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccccccccc-chHHHHHHHHH-------HHHHHHHhcc
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFS-ESGKLVAKLFQ-------KIQEMVEEEN 266 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~-e~~~~v~~~f~-------~~~~~~~~~~ 266 (426)
|.++|+|+||+|||++++.++..+...........-.+.+...+....-.. .....+...+. ..........
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 468999999999999999999988543311000112334444333221000 00111111010 0011112235
Q ss_pred CcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccC--eEEEeCCC
Q 014376 267 NLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRAD--IKAYVGPP 344 (426)
Q Consensus 267 ~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~--~~i~i~~p 344 (426)
...+++||.+|.+...... .........+...+.. ...+++-++.|++....-+ +..++. ..+.+.+.
T Consensus 81 ~~~llilDglDE~~~~~~~-------~~~~~~~~~l~~l~~~-~~~~~~~liit~r~~~~~~--~~~~~~~~~~~~l~~~ 150 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQS-------QERQRLLDLLSQLLPQ-ALPPGVKLIITSRPRAFPD--LRRRLKQAQILELEPF 150 (166)
T ss_pred CceEEEEechHhcccchhh-------hHHHHHHHHHHHHhhh-ccCCCCeEEEEEcCChHHH--HHHhcCCCcEEEECCC
Confidence 6789999999998763211 0111222223233332 2234444444444322211 232221 46899999
Q ss_pred CHHHHHHHHHHHHHH
Q 014376 345 TLQARYEILRSCLQE 359 (426)
Q Consensus 345 ~~~~r~~Il~~~l~~ 359 (426)
+.+++.++++.+++.
T Consensus 151 ~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 151 SEEDIKQYLRKYFSN 165 (166)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999988753
No 204
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.72 E-value=4e-07 Score=95.56 Aligned_cols=153 Identities=22% Similarity=0.344 Sum_probs=100.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccc-cCCCCcceEEEEeccccccc-------cccchHHHHH--HHHHHHHHHHH
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRF-SSRYPQCQLVEVNAHSLFSK-------WFSESGKLVA--KLFQKIQEMVE 263 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~-~~~~~~~~~i~i~~~~l~~~-------~~~e~~~~v~--~~f~~~~~~~~ 263 (426)
|..++++|-||||||.+++.+...+.... ....|...+++||+..+.+. |..-++..+. ...+.....+.
T Consensus 422 g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~ 501 (767)
T KOG1514|consen 422 GSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFT 501 (767)
T ss_pred ceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhc
Confidence 56899999999999999999999774221 23356778899999877541 1100110000 00001111111
Q ss_pred ---hccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHh----cccC
Q 014376 264 ---EENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFV----DRAD 336 (426)
Q Consensus 264 ---~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~----~R~~ 336 (426)
.+..++||+|||+|.|..+.+ .++..++.+-. ..+.+.+||+.+|..+.....|. +|.+
T Consensus 502 ~~k~~~~~~VvLiDElD~Lvtr~Q------------dVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg 567 (767)
T KOG1514|consen 502 VPKPKRSTTVVLIDELDILVTRSQ------------DVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSSRLG 567 (767)
T ss_pred cCCCCCCCEEEEeccHHHHhcccH------------HHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccchhhhcc
Confidence 345779999999999987553 35455554422 24567888888887766443333 6776
Q ss_pred e-EEEeCCCCHHHHHHHHHHHHHHH
Q 014376 337 I-KAYVGPPTLQARYEILRSCLQEL 360 (426)
Q Consensus 337 ~-~i~i~~p~~~~r~~Il~~~l~~l 360 (426)
. .+.|.+++..+..+|+..+++.+
T Consensus 568 ~tRi~F~pYth~qLq~Ii~~RL~~~ 592 (767)
T KOG1514|consen 568 LTRICFQPYTHEQLQEIISARLKGL 592 (767)
T ss_pred ceeeecCCCCHHHHHHHHHHhhcch
Confidence 4 67899999999999999999876
No 205
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.72 E-value=1.3e-08 Score=96.71 Aligned_cols=42 Identities=33% Similarity=0.517 Sum_probs=33.5
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (426)
+.+..|..+.|.||+|||||||.|++++.+. |..+.+.+++.
T Consensus 23 ~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~-------p~~G~V~l~g~ 64 (258)
T COG1120 23 FSIPKGEITGILGPNGSGKSTLLKCLAGLLK-------PKSGEVLLDGK 64 (258)
T ss_pred EEecCCcEEEEECCCCCCHHHHHHHHhccCC-------CCCCEEEECCC
Confidence 5677799999999999999999999999884 33444555553
No 206
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=8e-08 Score=97.32 Aligned_cols=47 Identities=38% Similarity=0.479 Sum_probs=39.4
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 157 ~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
-|.+++|++..|..|.-.+. | |++++++||||||||++++.+...+.
T Consensus 177 D~~DV~GQ~~AKrAleiAAA--------G--------gHnLl~~GpPGtGKTmla~Rl~~lLP 223 (490)
T COG0606 177 DFKDVKGQEQAKRALEIAAA--------G--------GHNLLLVGPPGTGKTMLASRLPGLLP 223 (490)
T ss_pred chhhhcCcHHHHHHHHHHHh--------c--------CCcEEEecCCCCchHHhhhhhcccCC
Confidence 47789999999988875543 3 67799999999999999999988773
No 207
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.71 E-value=9.6e-09 Score=101.83 Aligned_cols=45 Identities=24% Similarity=0.368 Sum_probs=37.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLF 240 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~ 240 (426)
+.|..|..+.|.||+||||||++|+||+.. .|+.+.|.+++.++.
T Consensus 26 l~i~~Gef~~lLGPSGcGKTTlLR~IAGfe-------~p~~G~I~l~G~~i~ 70 (352)
T COG3842 26 LDIKKGEFVTLLGPSGCGKTTLLRMIAGFE-------QPSSGEILLDGEDIT 70 (352)
T ss_pred eeecCCcEEEEECCCCCCHHHHHHHHhCCC-------CCCCceEEECCEECC
Confidence 457778999999999999999999999987 466677888877654
No 208
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.70 E-value=2.4e-07 Score=83.32 Aligned_cols=102 Identities=25% Similarity=0.364 Sum_probs=63.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHH-----------HHHHH
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKI-----------QEMVE 263 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~-----------~~~~~ 263 (426)
..|+|+|++||||+.+|++|.+... ..+.+++.+||..+... ..-..+|... ..+++
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~------r~~~pfi~vnc~~~~~~------~~e~~LFG~~~~~~~~~~~~~~G~l~ 90 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSP------RKNGPFISVNCAALPEE------LLESELFGHEKGAFTGARSDKKGLLE 90 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCST------TTTS-EEEEETTTS-HH------HHHHHHHEBCSSSSTTTSSEBEHHHH
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhh------cccCCeEEEehhhhhcc------hhhhhhhccccccccccccccCCcee
Confidence 3499999999999999999988442 34678899999876321 1122223210 01111
Q ss_pred hccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhh--cC-------CCcEEEEEEeCCC
Q 014376 264 EENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL--KS-------SPNVIILTTSNIT 324 (426)
Q Consensus 264 ~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l--~~-------~~~viVi~TtN~~ 324 (426)
......|+||||+.|.. .++..|++.|+.- .+ .-++.||+||+..
T Consensus 91 -~A~~GtL~Ld~I~~L~~---------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 91 -QANGGTLFLDEIEDLPP---------------ELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp -HTTTSEEEEETGGGS-H---------------HHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred -eccceEEeecchhhhHH---------------HHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 13558999999999977 4566777777632 11 1368888888854
No 209
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.69 E-value=5.3e-08 Score=92.59 Aligned_cols=72 Identities=24% Similarity=0.389 Sum_probs=44.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccc---hHHHHHHHHHHHHHHHHhccCcEEE
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSE---SGKLVAKLFQKIQEMVEEENNLVFV 271 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e---~~~~v~~~f~~~~~~~~~~~~~~il 271 (426)
.+++|+|+||||||+|+.++|..+... +..++.++..++....-.. .......+++. .....+|
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~------g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~-------l~~~dlL 166 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLR------GKSVLIITVADIMSAMKDTFSNSETSEEQLLND-------LSNVDLL 166 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhc------CCeEEEEEHHHHHHHHHHHHhhccccHHHHHHH-------hccCCEE
Confidence 469999999999999999999998432 2344666665554321110 00111122222 2345799
Q ss_pred EEechhhH
Q 014376 272 LIDEVESL 279 (426)
Q Consensus 272 lIDEid~l 279 (426)
+|||++..
T Consensus 167 vIDDig~~ 174 (244)
T PRK07952 167 VIDEIGVQ 174 (244)
T ss_pred EEeCCCCC
Confidence 99998764
No 210
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.69 E-value=4.4e-07 Score=87.33 Aligned_cols=166 Identities=15% Similarity=0.235 Sum_probs=84.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEE-Eec----cccc----c----ccccch-HHHHHHHHHHHHH
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVE-VNA----HSLF----S----KWFSES-GKLVAKLFQKIQE 260 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~-i~~----~~l~----~----~~~~e~-~~~v~~~f~~~~~ 260 (426)
..++|+||+|+||||+++.+++.+...- ..... +++ .++. . ...+.. ......+.+.+..
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~------~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQER------VVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIE 117 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCC------eEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999875210 00011 111 0000 0 000110 1112222222222
Q ss_pred HHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc--CCCcEEEEEEeCC--CCcC----CHHHh
Q 014376 261 MVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK--SSPNVIILTTSNI--TAAI----DIAFV 332 (426)
Q Consensus 261 ~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~--~~~~viVi~TtN~--~~~l----d~al~ 332 (426)
.. ......+++|||++.+... ....+ ..+-.+. ....+.|+.+... ...+ ...+.
T Consensus 118 ~~-~~~~~~vliiDe~~~l~~~---------------~~~~l-~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~ 180 (269)
T TIGR03015 118 QF-AAGKRALLVVDEAQNLTPE---------------LLEEL-RMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLR 180 (269)
T ss_pred HH-hCCCCeEEEEECcccCCHH---------------HHHHH-HHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHH
Confidence 11 2356689999999887431 12222 1222111 1222333333322 1111 13466
Q ss_pred cccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhcc
Q 014376 333 DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKL 387 (426)
Q Consensus 333 ~R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~ 387 (426)
+|+...+++++.+.++..+++...+........ .......+..+.+.+.|.
T Consensus 181 ~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~----~~~~~~~~~~i~~~s~G~ 231 (269)
T TIGR03015 181 QRIIASCHLGPLDREETREYIEHRLERAGNRDA----PVFSEGAFDAIHRFSRGI 231 (269)
T ss_pred hheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCC----CCcCHHHHHHHHHHcCCc
Confidence 888888999999999999998888875421000 011223445566666665
No 211
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.68 E-value=3.8e-07 Score=91.86 Aligned_cols=208 Identities=19% Similarity=0.212 Sum_probs=124.8
Q ss_pred hhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccc
Q 014376 160 SLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (426)
Q Consensus 160 ~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (426)
.+.+.+.-.+.+.+|+..++... .++.+++.|-||+|||.+..-+...+.... .....+++||.++
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle~~----------t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~----~~~~~v~inc~sl 216 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLELN----------TSGSLYVSGQPGTGKTALLSRVLDSLSKSS----KSPVTVYINCTSL 216 (529)
T ss_pred CccchHHHHHHHHHHHHhhhhcc----------cCcceEeeCCCCcchHHHHHHHHHhhhhhc----ccceeEEEeeccc
Confidence 47778888888888877654333 246799999999999999987777664322 2335689999875
Q ss_pred ccccccchHHHHHHHHHHH-----------------HHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHH
Q 014376 240 FSKWFSESGKLVAKLFQKI-----------------QEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNAL 302 (426)
Q Consensus 240 ~~~~~~e~~~~v~~~f~~~-----------------~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~l 302 (426)
.. ....+..+|..+ ..-......+.++++||+|.|....+. ++..+
T Consensus 217 ~~-----~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~------------vLy~l 279 (529)
T KOG2227|consen 217 TE-----ASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQT------------VLYTL 279 (529)
T ss_pred cc-----hHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccc------------eeeee
Confidence 32 122222222221 111112335789999999999864432 22222
Q ss_pred HHHhhhhcCCCcEEEEEEeCCCCcCCHHHh---ccc---CeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCc
Q 014376 303 LTQMDKLKSSPNVIILTTSNITAAIDIAFV---DRA---DIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSM 376 (426)
Q Consensus 303 l~~ld~l~~~~~viVi~TtN~~~~ld~al~---~R~---~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~ 376 (426)
+. +.. ....++++++..|..+.-|+.+- .|. +..+.|++++.++.++|+...+.+.-..-.. ...
T Consensus 280 Fe-wp~-lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~-------~~A 350 (529)
T KOG2227|consen 280 FE-WPK-LPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFL-------NAA 350 (529)
T ss_pred hh-ccc-CCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccc-------hHH
Confidence 22 122 13456888888888776554433 222 4578999999999999999998875321111 112
Q ss_pred hhhHHHHhhccCchHHHHhhhhHHHHHHHHHHHHH
Q 014376 377 LPNFSILKEKLSNPDIQEADRSQHFYKQLLEAAEA 411 (426)
Q Consensus 377 l~~l~~~~~~~s~~di~~~~~~~~~~~~L~~~a~~ 411 (426)
+.-.++...+. .+|++.+. .+.+..+++|+.
T Consensus 351 ie~~ArKvaa~-SGDlRkaL---dv~R~aiEI~E~ 381 (529)
T KOG2227|consen 351 IELCARKVAAP-SGDLRKAL---DVCRRAIEIAEI 381 (529)
T ss_pred HHHHHHHhccC-chhHHHHH---HHHHHHHHHHHH
Confidence 33334444443 34555543 455556666653
No 212
>PRK12377 putative replication protein; Provisional
Probab=98.68 E-value=1.2e-07 Score=90.29 Aligned_cols=113 Identities=18% Similarity=0.291 Sum_probs=62.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHH---HHHHHHHhccCcEEE
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQ---KIQEMVEEENNLVFV 271 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~---~~~~~~~~~~~~~il 271 (426)
.+++|+||||||||+|+.+|++.+... +..++.++..++.... ...|. .....+.......+|
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~------g~~v~~i~~~~l~~~l--------~~~~~~~~~~~~~l~~l~~~dLL 167 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAK------GRSVIVVTVPDVMSRL--------HESYDNGQSGEKFLQELCKVDLL 167 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc------CCCeEEEEHHHHHHHH--------HHHHhccchHHHHHHHhcCCCEE
Confidence 469999999999999999999998532 2234555555544321 11111 001122222456799
Q ss_pred EEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCc-----CCHHHhccc
Q 014376 272 LIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAA-----IDIAFVDRA 335 (426)
Q Consensus 272 lIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~-----ld~al~~R~ 335 (426)
+|||+...... ......|+..++.-......+| .|||.... +...+++|+
T Consensus 168 iIDDlg~~~~s-------------~~~~~~l~~ii~~R~~~~~pti-itSNl~~~~l~~~~~~ri~dRl 222 (248)
T PRK12377 168 VLDEIGIQRET-------------KNEQVVLNQIIDRRTASMRSVG-MLTNLNHEAMSTLLGERVMDRM 222 (248)
T ss_pred EEcCCCCCCCC-------------HHHHHHHHHHHHHHHhcCCCEE-EEcCCCHHHHHHHhhHHHHHHH
Confidence 99998543211 1233456666665433333344 45676432 344455554
No 213
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.68 E-value=1.6e-07 Score=85.09 Aligned_cols=111 Identities=21% Similarity=0.266 Sum_probs=66.5
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccc--cccccchHHHHHHHHHHHHHHHHhcc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLF--SKWFSESGKLVAKLFQKIQEMVEEEN 266 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~--~~~~~e~~~~v~~~f~~~~~~~~~~~ 266 (426)
+.+..|..+.|.||+|+|||||++.|++.+. |..+.+.+++..+. .....-++ ..++...-++.++ .
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-------p~~G~i~~~g~~i~~~~q~~~LSg-Gq~qrv~laral~---~ 88 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI-------PNGDNDEWDGITPVYKPQYIDLSG-GELQRVAIAAALL---R 88 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcCCC-------CCCcEEEECCEEEEEEcccCCCCH-HHHHHHHHHHHHh---c
Confidence 4567799999999999999999999999873 34455666553321 11111111 1223333344443 4
Q ss_pred CcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCC-cEEEEEEeCCC
Q 014376 267 NLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSP-NVIILTTSNIT 324 (426)
Q Consensus 267 ~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~-~viVi~TtN~~ 324 (426)
.|.++++||-..-. +......++..+..+.... ..++++||+..
T Consensus 89 ~p~lllLDEPts~L--------------D~~~~~~l~~~l~~~~~~~~~tiiivsH~~~ 133 (177)
T cd03222 89 NATFYLFDEPSAYL--------------DIEQRLNAARAIRRLSEEGKKTALVVEHDLA 133 (177)
T ss_pred CCCEEEEECCcccC--------------CHHHHHHHHHHHHHHHHcCCCEEEEEECCHH
Confidence 78899999943211 1233344555555554443 68888888753
No 214
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.67 E-value=1.8e-06 Score=82.23 Aligned_cols=74 Identities=20% Similarity=0.175 Sum_probs=47.8
Q ss_pred CcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCC-------------CcCCHHHhc
Q 014376 267 NLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNIT-------------AAIDIAFVD 333 (426)
Q Consensus 267 ~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~-------------~~ld~al~~ 333 (426)
-|.++||||++.|-- ..+..|-+.++. .-.-+||.++|+. .-+.+.+++
T Consensus 296 vPGVLFIDEVhMLDi---------------EcFTyL~kalES---~iaPivifAsNrG~~~irGt~d~~sPhGip~dllD 357 (456)
T KOG1942|consen 296 VPGVLFIDEVHMLDI---------------ECFTYLHKALES---PIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD 357 (456)
T ss_pred cCcceEeeehhhhhh---------------HHHHHHHHHhcC---CCCceEEEecCCcceeecCCcCCCCCCCCCHHHhh
Confidence 478889998876632 445555555443 3334555556653 335788999
Q ss_pred ccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 334 RADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 334 R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
|. .++..-+.+.++.++|++...+.
T Consensus 358 Rl-~Iirt~~y~~~e~r~Ii~~Ra~~ 382 (456)
T KOG1942|consen 358 RL-LIIRTLPYDEEEIRQIIKIRAQV 382 (456)
T ss_pred he-eEEeeccCCHHHHHHHHHHHHhh
Confidence 98 56666666777788888776653
No 215
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.66 E-value=1.9e-07 Score=83.46 Aligned_cols=110 Identities=17% Similarity=0.255 Sum_probs=66.2
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccc--------ccc----chHHHHHHHHH
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSK--------WFS----ESGKLVAKLFQ 256 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~--------~~~----e~~~~v~~~f~ 256 (426)
+.+..|..+.|.||+|+|||||++.|++... |..+-+.+++.++... ..+ -++. ..+...
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-------~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G-~~qrl~ 92 (163)
T cd03216 21 LSVRRGEVHALLGENGAGKSTLMKILSGLYK-------PDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVG-ERQMVE 92 (163)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-------CCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHH-HHHHHH
Confidence 5677799999999999999999999999873 3445566665443210 000 1111 122222
Q ss_pred HHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCC
Q 014376 257 KIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNI 323 (426)
Q Consensus 257 ~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~ 323 (426)
-++.++ ..|.++++||-..- . +......+...+.++...+.++|++||+.
T Consensus 93 laral~---~~p~illlDEP~~~-----------L---D~~~~~~l~~~l~~~~~~~~tiii~sh~~ 142 (163)
T cd03216 93 IARALA---RNARLLILDEPTAA-----------L---TPAEVERLFKVIRRLRAQGVAVIFISHRL 142 (163)
T ss_pred HHHHHh---cCCCEEEEECCCcC-----------C---CHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 333333 47899999994321 1 12333445555555544567888888864
No 216
>PRK06921 hypothetical protein; Provisional
Probab=98.66 E-value=3.3e-07 Score=88.52 Aligned_cols=119 Identities=18% Similarity=0.272 Sum_probs=64.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEE
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLI 273 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illI 273 (426)
+..++|+||+|+|||+|+.++|+.+.... +..++++...+++.. +...|......+.......+|+|
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~-----g~~v~y~~~~~l~~~--------l~~~~~~~~~~~~~~~~~dlLiI 183 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKK-----GVPVLYFPFVEGFGD--------LKDDFDLLEAKLNRMKKVEVLFI 183 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhc-----CceEEEEEHHHHHHH--------HHHHHHHHHHHHHHhcCCCEEEE
Confidence 45799999999999999999999884321 234456665444321 11122222222222245679999
Q ss_pred echhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCC-CCcC---CHHHhcc
Q 014376 274 DEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNI-TAAI---DIAFVDR 334 (426)
Q Consensus 274 DEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~-~~~l---d~al~~R 334 (426)
||++.= +.|.+. ........|+..++.....+..+|| |||. +..+ ++.+.+|
T Consensus 184 DDl~~~-------~~g~e~-~t~~~~~~lf~iin~R~~~~k~tIi-tsn~~~~el~~~~~~l~sR 239 (266)
T PRK06921 184 DDLFKP-------VNGKPR-ATEWQIEQMYSVLNYRYLNHKPILI-SSELTIDELLDIDEALGSR 239 (266)
T ss_pred eccccc-------cCCCcc-CCHHHHHHHHHHHHHHHHCCCCEEE-ECCCCHHHHhhhhhHHHHH
Confidence 998320 112221 1112334566666655444444555 4554 3333 4455544
No 217
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.66 E-value=3.4e-07 Score=96.67 Aligned_cols=167 Identities=17% Similarity=0.203 Sum_probs=99.9
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEe
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVN 235 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~ 235 (426)
..|++++|....-+++.+.+... +..+ ..|+|+|++||||+++|+++..... .....++.+|
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~~---A~~~---------~pvlI~GE~GtGK~~lA~aiH~~s~------r~~~pfv~in 262 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARKL---AMLD---------APLLITGDTGTGKDLLAYACHLRSP------RGKKPFLALN 262 (520)
T ss_pred ccccceeECCHHHHHHHHHHHHH---hCCC---------CCEEEECCCCccHHHHHHHHHHhCC------CCCCCeEEec
Confidence 46788999887666666655432 2222 3499999999999999999866542 2346779999
Q ss_pred ccccccccccchHHHHHHHHHHH-----------HHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHH
Q 014376 236 AHSLFSKWFSESGKLVAKLFQKI-----------QEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLT 304 (426)
Q Consensus 236 ~~~l~~~~~~e~~~~v~~~f~~~-----------~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~ 304 (426)
|..+...+. -..+|... ..+++ ....+.|+||||+.+.. ..+..|+.
T Consensus 263 ca~~~~~~~------e~elFG~~~~~~~~~~~~~~g~~e-~a~~GtL~LdeI~~L~~---------------~~Q~~Ll~ 320 (520)
T PRK10820 263 CASIPDDVV------ESELFGHAPGAYPNALEGKKGFFE-QANGGSVLLDEIGEMSP---------------RMQAKLLR 320 (520)
T ss_pred cccCCHHHH------HHHhcCCCCCCcCCcccCCCChhh-hcCCCEEEEeChhhCCH---------------HHHHHHHH
Confidence 987642111 11122110 00111 12457899999999866 34455666
Q ss_pred Hhhhh--cC-------CCcEEEEEEeCCCC-------cCCHHHhcccC-eEEEeCCCCH--HHHHHHHHHHHHHHHH
Q 014376 305 QMDKL--KS-------SPNVIILTTSNITA-------AIDIAFVDRAD-IKAYVGPPTL--QARYEILRSCLQELIR 362 (426)
Q Consensus 305 ~ld~l--~~-------~~~viVi~TtN~~~-------~ld~al~~R~~-~~i~i~~p~~--~~r~~Il~~~l~~l~~ 362 (426)
.++.- .+ ..++.||+||+..- .+.+.+..|+. ..+.+|+... +.+..+++.++.++..
T Consensus 321 ~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~ 397 (520)
T PRK10820 321 FLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFAD 397 (520)
T ss_pred HHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHH
Confidence 65431 11 12456777766542 24566778864 4556666544 3455566777776544
No 218
>PF13173 AAA_14: AAA domain
Probab=98.64 E-value=1.4e-07 Score=80.84 Aligned_cols=122 Identities=26% Similarity=0.410 Sum_probs=68.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEE
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLI 273 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illI 273 (426)
++.++|+||.|+||||+++.+++.+. +....++++..+....... ...+.+...+.. .....+++|
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-------~~~~~~yi~~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~i~i 67 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-------PPENILYINFDDPRDRRLA-----DPDLLEYFLELI--KPGKKYIFI 67 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-------ccccceeeccCCHHHHHHh-----hhhhHHHHHHhh--ccCCcEEEE
Confidence 46799999999999999999998874 2334477776554321100 000112222211 125689999
Q ss_pred echhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCc---CCHHHhcccCeEEEeCCCCHHH
Q 014376 274 DEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAA---IDIAFVDRADIKAYVGPPTLQA 348 (426)
Q Consensus 274 DEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~---ld~al~~R~~~~i~i~~p~~~~ 348 (426)
||++.+..- ...+..+. +. .....+++++++.... ....+.+|. ..+.+.|.+..+
T Consensus 68 DEiq~~~~~-------------~~~lk~l~---d~--~~~~~ii~tgS~~~~l~~~~~~~l~gr~-~~~~l~Plsf~E 126 (128)
T PF13173_consen 68 DEIQYLPDW-------------EDALKFLV---DN--GPNIKIILTGSSSSLLSKDIAESLAGRV-IEIELYPLSFRE 126 (128)
T ss_pred ehhhhhccH-------------HHHHHHHH---Hh--ccCceEEEEccchHHHhhcccccCCCeE-EEEEECCCCHHH
Confidence 999877321 12222222 21 1123444444444333 234556776 477888887655
No 219
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.64 E-value=8.9e-07 Score=96.68 Aligned_cols=171 Identities=16% Similarity=0.217 Sum_probs=96.7
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEec
Q 014376 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (426)
Q Consensus 157 ~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (426)
.|++++|.....+.+.+.+... ... +..|+|+|++|||||++|++|..... ..+.+++.++|
T Consensus 374 ~~~~liG~S~~~~~~~~~~~~~---a~~---------~~pVLI~GE~GTGK~~lA~~ih~~s~------r~~~~~v~i~c 435 (686)
T PRK15429 374 EFGEIIGRSEAMYSVLKQVEMV---AQS---------DSTVLILGETGTGKELIARAIHNLSG------RNNRRMVKMNC 435 (686)
T ss_pred cccceeecCHHHHHHHHHHHHH---hCC---------CCCEEEECCCCcCHHHHHHHHHHhcC------CCCCCeEEEec
Confidence 3556777766666665554431 221 24599999999999999999988663 23567799999
Q ss_pred cccccc-----cccchHHHHHH-HHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc
Q 014376 237 HSLFSK-----WFSESGKLVAK-LFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK 310 (426)
Q Consensus 237 ~~l~~~-----~~~e~~~~v~~-~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~ 310 (426)
..+... .|+........ ..... ..++ ....+.|+||||+.+.. ..+..|+..++.-.
T Consensus 436 ~~~~~~~~~~~lfg~~~~~~~g~~~~~~-g~le-~a~~GtL~Ldei~~L~~---------------~~Q~~L~~~l~~~~ 498 (686)
T PRK15429 436 AAMPAGLLESDLFGHERGAFTGASAQRI-GRFE-LADKSSLFLDEVGDMPL---------------ELQPKLLRVLQEQE 498 (686)
T ss_pred ccCChhHhhhhhcCcccccccccccchh-hHHH-hcCCCeEEEechhhCCH---------------HHHHHHHHHHHhCC
Confidence 876321 22211000000 00000 0111 13457999999998865 34556666665321
Q ss_pred --C-------CCcEEEEEEeCCCC-------cCCHHHhcccC-eEEEeCCCCH--HHHHHHHHHHHHHHHH
Q 014376 311 --S-------SPNVIILTTSNITA-------AIDIAFVDRAD-IKAYVGPPTL--QARYEILRSCLQELIR 362 (426)
Q Consensus 311 --~-------~~~viVi~TtN~~~-------~ld~al~~R~~-~~i~i~~p~~--~~r~~Il~~~l~~l~~ 362 (426)
. ..++-+|++++..- .+...+..|+. ..|.+|+... ++...++++++.+...
T Consensus 499 ~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~ 569 (686)
T PRK15429 499 FERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIAR 569 (686)
T ss_pred EEeCCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHH
Confidence 1 13567888877642 23455556653 2345555433 3344566777776544
No 220
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.64 E-value=1.2e-06 Score=92.35 Aligned_cols=165 Identities=18% Similarity=0.163 Sum_probs=99.7
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecc
Q 014376 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (426)
Q Consensus 158 ~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (426)
.+.++|....-+.+.+.+.. .... +..|+|+|++||||+++|++|..... ..+.+++.+||.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~---~a~~---------~~pVlI~Ge~GtGK~~~A~~ih~~s~------r~~~p~v~v~c~ 247 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEV---VAAS---------DLNVLILGETGVGKELVARAIHAASP------RADKPLVYLNCA 247 (509)
T ss_pred CCceeecCHHHHHHHHHHHH---HhCC---------CCcEEEECCCCccHHHHHHHHHHhCC------cCCCCeEEEEcc
Confidence 34567776666666655543 1222 24599999999999999999988763 235678999998
Q ss_pred ccccccccchHHHHHHHHHHHHH-----------HHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHh
Q 014376 238 SLFSKWFSESGKLVAKLFQKIQE-----------MVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQM 306 (426)
Q Consensus 238 ~l~~~~~~e~~~~v~~~f~~~~~-----------~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l 306 (426)
.+....+ -..+|...+. .++ ....+.||||||+.|.. ..+..|++.+
T Consensus 248 ~~~~~~~------e~~lfG~~~g~~~ga~~~~~g~~~-~a~gGtL~ldeI~~L~~---------------~~Q~~Ll~~l 305 (509)
T PRK05022 248 ALPESLA------ESELFGHVKGAFTGAISNRSGKFE-LADGGTLFLDEIGELPL---------------ALQAKLLRVL 305 (509)
T ss_pred cCChHHH------HHHhcCccccccCCCcccCCcchh-hcCCCEEEecChhhCCH---------------HHHHHHHHHH
Confidence 7642111 1122221100 111 13457899999999875 3455666666
Q ss_pred hhhc---------CCCcEEEEEEeCCCC-------cCCHHHhcccC-eEEEeCCCCH--HHHHHHHHHHHHHHHH
Q 014376 307 DKLK---------SSPNVIILTTSNITA-------AIDIAFVDRAD-IKAYVGPPTL--QARYEILRSCLQELIR 362 (426)
Q Consensus 307 d~l~---------~~~~viVi~TtN~~~-------~ld~al~~R~~-~~i~i~~p~~--~~r~~Il~~~l~~l~~ 362 (426)
+.-. ...++-||++||..- .+...|..|+. ..|++|+... ++...++++++++...
T Consensus 306 ~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~ 380 (509)
T PRK05022 306 QYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRA 380 (509)
T ss_pred hcCCEeeCCCCcceecceEEEEecCCCHHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHH
Confidence 5311 112567777777642 35666777774 3466666543 3455667777777643
No 221
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.63 E-value=1.4e-07 Score=93.49 Aligned_cols=115 Identities=19% Similarity=0.216 Sum_probs=67.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccc---hHHHHHHHHHHHHHHHHhccCcEEE
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSE---SGKLVAKLFQKIQEMVEEENNLVFV 271 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e---~~~~v~~~f~~~~~~~~~~~~~~il 271 (426)
.+++|+||+|+|||+|+.++|+.+-.. +..+++++..+++...... ........++.+ ....+|
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~------g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l-------~~~DLL 250 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDR------GKSVIYRTADELIEILREIRFNNDKELEEVYDLL-------INCDLL 250 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHC------CCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh-------ccCCEE
Confidence 569999999999999999999998421 3456777776665432110 000011111221 244689
Q ss_pred EEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCc----CCHHHhccc
Q 014376 272 LIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAA----IDIAFVDRA 335 (426)
Q Consensus 272 lIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~----ld~al~~R~ 335 (426)
+|||+..... .......|+..++.....+.-+||+|.-.+.. +++.+.+|+
T Consensus 251 IIDDlG~e~~-------------t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~~eri~SRL 305 (329)
T PRK06835 251 IIDDLGTEKI-------------TEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYSERISSRL 305 (329)
T ss_pred EEeccCCCCC-------------CHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHhHHHHHHH
Confidence 9999855421 11345667777776555445555554333333 356677775
No 222
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.63 E-value=2.8e-08 Score=95.30 Aligned_cols=42 Identities=26% Similarity=0.463 Sum_probs=36.4
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (426)
+.|..|+.+-|.||+|+|||||.|.||+.. .|+.+.|.++..
T Consensus 23 l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe-------~p~~G~I~~~~~ 64 (345)
T COG1118 23 LDIKSGELVALLGPSGAGKSTLLRIIAGLE-------TPDAGRIRLNGR 64 (345)
T ss_pred eeecCCcEEEEECCCCCcHHHHHHHHhCcC-------CCCCceEEECCE
Confidence 456779999999999999999999999998 466677888776
No 223
>PRK08181 transposase; Validated
Probab=98.63 E-value=4.5e-08 Score=94.40 Aligned_cols=125 Identities=19% Similarity=0.252 Sum_probs=70.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccc-hHHHHHHHHHHHHHHHHhccCcEEEE
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSE-SGKLVAKLFQKIQEMVEEENNLVFVL 272 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e-~~~~v~~~f~~~~~~~~~~~~~~ill 272 (426)
+++++|+||||||||+|+.+++..+... +..+++++..++....... ......+.+.. .....+|+
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~------g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~-------l~~~dLLI 172 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIEN------GWRVLFTRTTDLVQKLQVARRELQLESAIAK-------LDKFDLLI 172 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHc------CCceeeeeHHHHHHHHHHHHhCCcHHHHHHH-------HhcCCEEE
Confidence 4679999999999999999999887421 2344666665554322110 00111122222 23557999
Q ss_pred EechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCc----------CCHHHhccc---CeEE
Q 014376 273 IDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAA----------IDIAFVDRA---DIKA 339 (426)
Q Consensus 273 IDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~----------ld~al~~R~---~~~i 339 (426)
|||++..... ......|+..++..... .- +|.|||.+-. +-.++++|. ...+
T Consensus 173 IDDlg~~~~~-------------~~~~~~Lf~lin~R~~~-~s-~IiTSN~~~~~w~~~~~D~~~a~aildRL~h~~~~i 237 (269)
T PRK08181 173 LDDLAYVTKD-------------QAETSVLFELISARYER-RS-ILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIF 237 (269)
T ss_pred EeccccccCC-------------HHHHHHHHHHHHHHHhC-CC-EEEEcCCCHHHHHHhcCCccchhhHHHhhhcCceEE
Confidence 9998765321 13345666777654433 33 4455665422 224556775 2345
Q ss_pred EeCCCCH
Q 014376 340 YVGPPTL 346 (426)
Q Consensus 340 ~i~~p~~ 346 (426)
.+...+.
T Consensus 238 ~~~g~s~ 244 (269)
T PRK08181 238 EMNVESY 244 (269)
T ss_pred ecCCccc
Confidence 5555443
No 224
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.63 E-value=2.8e-07 Score=86.08 Aligned_cols=114 Identities=22% Similarity=0.295 Sum_probs=73.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccc--c-------------------cccccch
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL--F-------------------SKWFSES 247 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l--~-------------------~~~~~e~ 247 (426)
|.+..|..+-|.|+||+|||||+|.||+.+ .|+.+-+.+++.-. + ....|-+
T Consensus 48 f~i~~Ge~vGiiG~NGaGKSTLlkliaGi~-------~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~ 120 (249)
T COG1134 48 FEIYKGERVGIIGHNGAGKSTLLKLIAGIY-------KPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLT 120 (249)
T ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhCcc-------CCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCcc
Confidence 678889999999999999999999999998 56666677776321 0 1112333
Q ss_pred HHHHHHHHHHHHHHHH-------------------------hccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHH
Q 014376 248 GKLVAKLFQKIQEMVE-------------------------EENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNAL 302 (426)
Q Consensus 248 ~~~v~~~f~~~~~~~~-------------------------~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~l 302 (426)
.+.+...++.+-++.+ ..-.|.|++|||+=..... .....-
T Consensus 121 ~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~--------------~F~~K~ 186 (249)
T COG1134 121 RKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDA--------------AFQEKC 186 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCH--------------HHHHHH
Confidence 4444444444333322 2457889999996544321 233334
Q ss_pred HHHhhhhcCCCcEEEEEEeCC
Q 014376 303 LTQMDKLKSSPNVIILTTSNI 323 (426)
Q Consensus 303 l~~ld~l~~~~~viVi~TtN~ 323 (426)
...+..+.....++|+++|+.
T Consensus 187 ~~rl~e~~~~~~tiv~VSHd~ 207 (249)
T COG1134 187 LERLNELVEKNKTIVLVSHDL 207 (249)
T ss_pred HHHHHHHHHcCCEEEEEECCH
Confidence 444555555568999999874
No 225
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.62 E-value=6.5e-07 Score=81.21 Aligned_cols=44 Identities=30% Similarity=0.392 Sum_probs=36.8
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (426)
|.+..|+.+-|.||+|+||||+.|.||..+ .|+.+.+.+++-+.
T Consensus 23 F~ae~Gei~GlLG~NGAGKTT~LRmiatlL-------~P~~G~v~idg~d~ 66 (245)
T COG4555 23 FEAEEGEITGLLGENGAGKTTLLRMIATLL-------IPDSGKVTIDGVDT 66 (245)
T ss_pred EEeccceEEEEEcCCCCCchhHHHHHHHhc-------cCCCceEEEeeccc
Confidence 567779999999999999999999999999 45566677776554
No 226
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.62 E-value=6.9e-07 Score=86.46 Aligned_cols=150 Identities=18% Similarity=0.150 Sum_probs=82.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccccc------c------cccchHHHHHHHHHHHHHHH
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFS------K------WFSESGKLVAKLFQKIQEMV 262 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~------~------~~~e~~~~v~~~f~~~~~~~ 262 (426)
.++||+|++|.|||++++.+...............+++.+....--+ . .............+.+..++
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ll 141 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLL 141 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHH
Confidence 35999999999999999999998765443322334666666532110 0 00001111223333333333
Q ss_pred HhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCC--cEEEEEEeCCCCcC--CHHHhcccCeE
Q 014376 263 EEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSP--NVIILTTSNITAAI--DIAFVDRADIK 338 (426)
Q Consensus 263 ~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~--~viVi~TtN~~~~l--d~al~~R~~~~ 338 (426)
.. -...+|+|||++.+...+. +-+..+++.+..+-..- .++.++|......+ |+.+.+||. .
T Consensus 142 r~-~~vrmLIIDE~H~lLaGs~------------~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~-~ 207 (302)
T PF05621_consen 142 RR-LGVRMLIIDEFHNLLAGSY------------RKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFE-P 207 (302)
T ss_pred HH-cCCcEEEeechHHHhcccH------------HHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccC-C
Confidence 32 3567999999999865221 23344455544443332 34455554444444 888999994 5
Q ss_pred EEeCCCCHH-HHHHHHHHHHH
Q 014376 339 AYVGPPTLQ-ARYEILRSCLQ 358 (426)
Q Consensus 339 i~i~~p~~~-~r~~Il~~~l~ 358 (426)
+.++..... +...++..+-.
T Consensus 208 ~~Lp~W~~d~ef~~LL~s~e~ 228 (302)
T PF05621_consen 208 FELPRWELDEEFRRLLASFER 228 (302)
T ss_pred ccCCCCCCCcHHHHHHHHHHH
Confidence 566665543 33444444333
No 227
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.62 E-value=5.8e-07 Score=78.83 Aligned_cols=23 Identities=43% Similarity=0.821 Sum_probs=21.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 014376 197 VLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 197 vLL~GPpGtGKTtLaralA~~l~ 219 (426)
++|+||||+|||++++.++....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999884
No 228
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.62 E-value=5.7e-07 Score=83.94 Aligned_cols=44 Identities=27% Similarity=0.424 Sum_probs=36.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (426)
+.+..|..+.|.||+|||||||...++.... |+.+.+.+++.++
T Consensus 26 l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~-------pt~G~v~i~g~d~ 69 (226)
T COG1136 26 LEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK-------PTSGEVLINGKDL 69 (226)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcccC-------CCCceEEECCEEc
Confidence 5678899999999999999999999998873 4566677776443
No 229
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.60 E-value=8.2e-08 Score=94.73 Aligned_cols=45 Identities=22% Similarity=0.397 Sum_probs=37.2
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLF 240 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~ 240 (426)
+.+..|..+.|.||+||||||++|+||+... ++.+-+.+++.++.
T Consensus 24 l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~-------~~~G~I~i~g~~vt 68 (338)
T COG3839 24 LDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE-------PTSGEILIDGRDVT 68 (338)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-------CCCceEEECCEECC
Confidence 5677899999999999999999999999884 45566777776553
No 230
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.60 E-value=2.9e-07 Score=83.51 Aligned_cols=44 Identities=32% Similarity=0.496 Sum_probs=35.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (426)
+.+..|..+.|.||+|+|||||++.|++.+. |..+.+.+++.++
T Consensus 20 ~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~-------~~~G~v~~~g~~~ 63 (180)
T cd03214 20 LSIEAGEIVGILGPNGAGKSTLLKTLAGLLK-------PSSGEILLDGKDL 63 (180)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCC-------CCCcEEEECCEEC
Confidence 4567799999999999999999999999773 4455566766544
No 231
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.59 E-value=1.3e-07 Score=84.91 Aligned_cols=45 Identities=33% Similarity=0.514 Sum_probs=37.2
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLF 240 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~ 240 (426)
+.+..|..++|.||+|+||||+.|.|.... .|..+.+.++..++.
T Consensus 23 ~~i~~Gef~fl~GpSGAGKSTllkLi~~~e-------~pt~G~i~~~~~dl~ 67 (223)
T COG2884 23 FHIPKGEFVFLTGPSGAGKSTLLKLIYGEE-------RPTRGKILVNGHDLS 67 (223)
T ss_pred EeecCceEEEEECCCCCCHHHHHHHHHhhh-------cCCCceEEECCeecc
Confidence 567789999999999999999999999988 455666777776653
No 232
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.59 E-value=1.3e-06 Score=92.03 Aligned_cols=167 Identities=16% Similarity=0.229 Sum_probs=100.2
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEe
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVN 235 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~ 235 (426)
..|++++|....-+.+.+.+. .++..+ ..|||+|++||||+++|++|..... ..+.+++.+|
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~---~~A~~~---------~pVLI~GE~GTGKe~lA~~IH~~S~------r~~~pfv~in 270 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVR---LYARSD---------ATVLILGESGTGKELVAQAIHQLSG------RRDFPFVAIN 270 (526)
T ss_pred cchhheeeCCHHHHHHHHHHH---HHhCCC---------CcEEEECCCCcCHHHHHHHHHHhcC------cCCCCEEEec
Confidence 346778888776665555543 223222 3499999999999999999987653 3456789999
Q ss_pred ccccccccccchHHHHHHHHHHH------------HHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHH
Q 014376 236 AHSLFSKWFSESGKLVAKLFQKI------------QEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALL 303 (426)
Q Consensus 236 ~~~l~~~~~~e~~~~v~~~f~~~------------~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll 303 (426)
|..+.... .-..+|... ..+++ ....+.||||||+.|.. ..+..|+
T Consensus 271 C~~l~e~l------leseLFG~~~gaftga~~~~~~Gl~e-~A~gGTLfLdeI~~Lp~---------------~~Q~~Ll 328 (526)
T TIGR02329 271 CGAIAESL------LEAELFGYEEGAFTGARRGGRTGLIE-AAHRGTLFLDEIGEMPL---------------PLQTRLL 328 (526)
T ss_pred cccCChhH------HHHHhcCCcccccccccccccccchh-hcCCceEEecChHhCCH---------------HHHHHHH
Confidence 98764211 111122110 00111 13457899999998866 3455666
Q ss_pred HHhhhhc--C-------CCcEEEEEEeCCCC-------cCCHHHhcccC-eEEEeCCCCH--HHHHHHHHHHHHHHHH
Q 014376 304 TQMDKLK--S-------SPNVIILTTSNITA-------AIDIAFVDRAD-IKAYVGPPTL--QARYEILRSCLQELIR 362 (426)
Q Consensus 304 ~~ld~l~--~-------~~~viVi~TtN~~~-------~ld~al~~R~~-~~i~i~~p~~--~~r~~Il~~~l~~l~~ 362 (426)
..++.-. . ..++-+|++||..- .+...+..|+. ..+.+|+... ++...++++++.+...
T Consensus 329 ~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~ 406 (526)
T TIGR02329 329 RVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAA 406 (526)
T ss_pred HHHhcCcEEecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHH
Confidence 6665311 0 12346777766542 23445556763 5667776654 4556677778877644
No 233
>PRK09183 transposase/IS protein; Provisional
Probab=98.58 E-value=8e-08 Score=92.44 Aligned_cols=106 Identities=22% Similarity=0.224 Sum_probs=59.2
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccc-hHHHHHHHHHHHHHHHHhccCcEE
Q 014376 192 SWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSE-SGKLVAKLFQKIQEMVEEENNLVF 270 (426)
Q Consensus 192 ~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e-~~~~v~~~f~~~~~~~~~~~~~~i 270 (426)
..+.+++|+||||||||+|+.+++..+... +..+..++..++...+... ....+...++.. ...+.+
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~------G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~------~~~~dl 167 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRA------GIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG------VMAPRL 167 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHc------CCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH------hcCCCE
Confidence 346789999999999999999998876321 2233455555543221100 001122333322 135679
Q ss_pred EEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCC
Q 014376 271 VLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNIT 324 (426)
Q Consensus 271 llIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~ 324 (426)
++|||++..... ....+.|+..++.....+ . +|.|||.+
T Consensus 168 LiiDdlg~~~~~-------------~~~~~~lf~li~~r~~~~-s-~iiTsn~~ 206 (259)
T PRK09183 168 LIIDEIGYLPFS-------------QEEANLFFQVIAKRYEKG-S-MILTSNLP 206 (259)
T ss_pred EEEcccccCCCC-------------hHHHHHHHHHHHHHHhcC-c-EEEecCCC
Confidence 999998654221 123345666666544333 3 45566764
No 234
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.5e-06 Score=94.82 Aligned_cols=172 Identities=24% Similarity=0.310 Sum_probs=109.9
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEec
Q 014376 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (426)
Q Consensus 157 ~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (426)
+=+.++|++++...+.+.+. ..+.|.... ...--++|.||.|+|||-||+++|..+ | .....++.++.
T Consensus 560 L~~~V~gQ~eAv~aIa~AI~----~sr~gl~~~--~~~awflflGpdgvGKt~lAkaLA~~~---F---gse~~~IriDm 627 (898)
T KOG1051|consen 560 LHERVIGQDEAVAAIAAAIR----RSRAGLKDP--NPDAWFLFLGPDGVGKTELAKALAEYV---F---GSEENFIRLDM 627 (898)
T ss_pred HHhhccchHHHHHHHHHHHH----hhhcccCCC--CCCeEEEEECCCchhHHHHHHHHHHHH---c---CCccceEEech
Confidence 34567777777666666544 344454332 224459999999999999999999998 2 23455688887
Q ss_pred ccc------ccccccchHHH-HHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhh
Q 014376 237 HSL------FSKWFSESGKL-VAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL 309 (426)
Q Consensus 237 ~~l------~~~~~~e~~~~-v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l 309 (426)
+++ .+...+..++. ..++...++. ...+||+|||||.... .+++.|+..+|+-
T Consensus 628 se~~evskligsp~gyvG~e~gg~Lteavrr-----rP~sVVLfdeIEkAh~---------------~v~n~llq~lD~G 687 (898)
T KOG1051|consen 628 SEFQEVSKLIGSPPGYVGKEEGGQLTEAVKR-----RPYSVVLFEEIEKAHP---------------DVLNILLQLLDRG 687 (898)
T ss_pred hhhhhhhhccCCCcccccchhHHHHHHHHhc-----CCceEEEEechhhcCH---------------HHHHHHHHHHhcC
Confidence 742 22212222222 2244444444 4669999999997654 6778888888854
Q ss_pred c---------CCCcEEEEEEeCCCCc----------------------------------------CCHHHhcccCeEEE
Q 014376 310 K---------SSPNVIILTTSNITAA----------------------------------------IDIAFVDRADIKAY 340 (426)
Q Consensus 310 ~---------~~~~viVi~TtN~~~~----------------------------------------ld~al~~R~~~~i~ 340 (426)
+ ..+|+|||.|+|.... +.+.|+.|.+..+.
T Consensus 688 rltDs~Gr~Vd~kN~I~IMTsn~~~~~i~~~~~~~~~l~~~~~~~~~~~~~k~~v~~~~~~~~~~~~r~Ef~nrid~i~l 767 (898)
T KOG1051|consen 688 RLTDSHGREVDFKNAIFIMTSNVGSSAIANDASLEEKLLDMDEKRGSYRLKKVQVSDAVRIYNKQFFRKEFLNRIDELDL 767 (898)
T ss_pred ccccCCCcEeeccceEEEEecccchHhhhcccccccccccchhhhhhhhhhhhhhhhhhhcccccccChHHhcccceeee
Confidence 3 2368999999886321 12344456677777
Q ss_pred eCCCCHHHHHHHHHHHHHHH
Q 014376 341 VGPPTLQARYEILRSCLQEL 360 (426)
Q Consensus 341 i~~p~~~~r~~Il~~~l~~l 360 (426)
+.+.+..+..++....+.+.
T Consensus 768 f~~l~~~~~~~i~~~~~~e~ 787 (898)
T KOG1051|consen 768 NLPLDRDELIEIVNKQLTEI 787 (898)
T ss_pred ecccchhhHhhhhhhHHHHH
Confidence 77777777777766666544
No 235
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.57 E-value=2.1e-07 Score=83.93 Aligned_cols=31 Identities=26% Similarity=0.508 Sum_probs=27.8
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 23 FSIEPGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 5567789999999999999999999999874
No 236
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=5.8e-07 Score=87.20 Aligned_cols=126 Identities=13% Similarity=0.158 Sum_probs=82.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccc---------cCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhc
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRF---------SSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEE 265 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~---------~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~ 265 (426)
..+||+||.|+||+++|.++|+.+-..- ....|+..++.-.... +. -....++.+...+... ...
T Consensus 20 HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~---~~--I~idqiR~l~~~~~~~-p~e 93 (290)
T PRK05917 20 SAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKG---RL--HSIETPRAIKKQIWIH-PYE 93 (290)
T ss_pred eeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCC---Cc--CcHHHHHHHHHHHhhC-ccC
Confidence 5699999999999999999999985321 1112332222111110 00 0122333333333221 112
Q ss_pred cCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCC
Q 014376 266 NNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPP 344 (426)
Q Consensus 266 ~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p 344 (426)
....|++||++|.+.. ...|+||+.|+. +++++++|..++.++.+-+.+++|+ ..+.|+++
T Consensus 94 ~~~kv~ii~~ad~mt~---------------~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~SRc-q~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMTL---------------DAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRSRS-LSIHIPME 154 (290)
T ss_pred CCceEEEEechhhcCH---------------HHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHhcc-eEEEccch
Confidence 4557999999999976 567999999987 6678888888888899999999998 56666654
No 237
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.56 E-value=1.7e-06 Score=93.87 Aligned_cols=165 Identities=18% Similarity=0.245 Sum_probs=99.4
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEec
Q 014376 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (426)
Q Consensus 157 ~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (426)
.|++++|....-+++.+.+... ... +..|+|+|++||||+++|++|.+... ..+.+++.+||
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~---a~~---------~~pvli~Ge~GtGK~~~A~~ih~~s~------r~~~pfv~vnc 384 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQA---AKS---------SFPVLLCGEEGVGKALLAQAIHNESE------RAAGPYIAVNC 384 (638)
T ss_pred cccceEECCHHHHHHHHHHHHH---hCc---------CCCEEEECCCCcCHHHHHHHHHHhCC------ccCCCeEEEEC
Confidence 5778888877666666665432 222 23499999999999999999988763 23467799999
Q ss_pred cccccccccchHHHHHHHHHHHH--------HHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhh
Q 014376 237 HSLFSKWFSESGKLVAKLFQKIQ--------EMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK 308 (426)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~~~~--------~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~ 308 (426)
..+... .....+|.... ..++ ....+.||||||+.+.. ..+..|+..++.
T Consensus 385 ~~~~~~------~~~~elfg~~~~~~~~~~~g~~~-~a~~GtL~ldei~~l~~---------------~~Q~~Ll~~l~~ 442 (638)
T PRK11388 385 QLYPDE------ALAEEFLGSDRTDSENGRLSKFE-LAHGGTLFLEKVEYLSP---------------ELQSALLQVLKT 442 (638)
T ss_pred CCCChH------HHHHHhcCCCCcCccCCCCCcee-ECCCCEEEEcChhhCCH---------------HHHHHHHHHHhc
Confidence 876321 11112222110 0011 13457899999998866 345566666653
Q ss_pred h--cCC-------CcEEEEEEeCCC-------CcCCHHHhcccC-eEEEeCCCCH--HHHHHHHHHHHHHHH
Q 014376 309 L--KSS-------PNVIILTTSNIT-------AAIDIAFVDRAD-IKAYVGPPTL--QARYEILRSCLQELI 361 (426)
Q Consensus 309 l--~~~-------~~viVi~TtN~~-------~~ld~al~~R~~-~~i~i~~p~~--~~r~~Il~~~l~~l~ 361 (426)
- .+- -++.||+||+.. ..+.+.+..|+. ..+.+|+... ++...+++.++.++.
T Consensus 443 ~~~~~~~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~ 514 (638)
T PRK11388 443 GVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLE 514 (638)
T ss_pred CcEEeCCCCceEEeeEEEEEeccCCHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHH
Confidence 1 111 146678877754 234555556663 3455555543 345566777777654
No 238
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.56 E-value=3.6e-07 Score=77.85 Aligned_cols=85 Identities=28% Similarity=0.463 Sum_probs=45.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccccc--cc----------ccchHHHHHHHHHHHHHH
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFS--KW----------FSESGKLVAKLFQKIQEM 261 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~--~~----------~~e~~~~v~~~f~~~~~~ 261 (426)
++.++++||+|+|||++++.+++.+........ ...++.+++....+ .+ ..........+++.+...
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKN-HPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC-CEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccC-CCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 567999999999999999999999843210000 34456666644321 00 000011122333333333
Q ss_pred HHhccCcEEEEEechhhHH
Q 014376 262 VEEENNLVFVLIDEVESLA 280 (426)
Q Consensus 262 ~~~~~~~~illIDEid~l~ 280 (426)
+.. ....+|+|||+|.+.
T Consensus 83 l~~-~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 83 LDR-RRVVLLVIDEADHLF 100 (131)
T ss_dssp HHH-CTEEEEEEETTHHHH
T ss_pred HHh-cCCeEEEEeChHhcC
Confidence 332 233699999999985
No 239
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.56 E-value=5.1e-06 Score=85.27 Aligned_cols=29 Identities=41% Similarity=0.800 Sum_probs=26.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (426)
++.+||+||+||||||.++.|+.++++.+
T Consensus 110 ~~iLLltGPsGcGKSTtvkvLskelg~~~ 138 (634)
T KOG1970|consen 110 SRILLLTGPSGCGKSTTVKVLSKELGYQL 138 (634)
T ss_pred ceEEEEeCCCCCCchhHHHHHHHhhCcee
Confidence 57899999999999999999999998765
No 240
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.56 E-value=3.2e-07 Score=85.48 Aligned_cols=150 Identities=25% Similarity=0.347 Sum_probs=75.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccccc-----cc-------------c-----c-----
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFS-----KW-------------F-----S----- 245 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~-----~~-------------~-----~----- 245 (426)
+..++|+||.|+|||+|++.+.+.+...-. ..+++....... .. + .
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~------~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 93 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGY------KVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEK 93 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EE------CCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEE
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCC------cEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchh
Confidence 367999999999999999999998832110 001111100000 00 0 0
Q ss_pred ---chHHHHHHHHHHHHHHHHhccCcEEEEEechhhHH-HHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcE-EEEEE
Q 014376 246 ---ESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLA-AARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNV-IILTT 320 (426)
Q Consensus 246 ---e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~-~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~v-iVi~T 320 (426)
.........+..+...+.......+++|||++.+. ... ........+...++......++ +|+++
T Consensus 94 ~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~~~~v~~~ 163 (234)
T PF01637_consen 94 ISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE----------EDKDFLKSLRSLLDSLLSQQNVSIVITG 163 (234)
T ss_dssp EECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT----------TTHHHHHHHHHHHHH----TTEEEEEEE
T ss_pred hhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc----------chHHHHHHHHHHHhhccccCCceEEEEC
Confidence 00011112222222223333444899999999987 211 2235666677777765445554 44444
Q ss_pred eCCCC-----cCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHHH
Q 014376 321 SNITA-----AIDIAFVDRADIKAYVGPPTLQARYEILRSCLQEL 360 (426)
Q Consensus 321 tN~~~-----~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~l 360 (426)
++... .-...+..|+.. +.+++.+.++..++++..+++.
T Consensus 164 S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~ 207 (234)
T PF01637_consen 164 SSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKEL 207 (234)
T ss_dssp SSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC
T ss_pred CchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHh
Confidence 43110 113345688866 9999999999999998877654
No 241
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.56 E-value=2e-07 Score=80.87 Aligned_cols=108 Identities=21% Similarity=0.342 Sum_probs=64.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEe
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLID 274 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illID 274 (426)
..|+|+|++||||+++|++|...... ....++.+++..+. ..+++. .....++|+
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~------~~~~~~~~~~~~~~-----------~~~l~~--------a~~gtL~l~ 76 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGR------ANGPFIVIDCASLP-----------AELLEQ--------AKGGTLYLK 76 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTT------CCS-CCCCCHHCTC-----------HHHHHH--------CTTSEEEEE
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCc------cCCCeEEechhhCc-----------HHHHHH--------cCCCEEEEC
Confidence 45999999999999999999887643 12333445554432 223333 255789999
Q ss_pred chhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCC--C-----cCCHHHhcccC-eEEEeCC
Q 014376 275 EVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNIT--A-----AIDIAFVDRAD-IKAYVGP 343 (426)
Q Consensus 275 Eid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~--~-----~ld~al~~R~~-~~i~i~~ 343 (426)
|+|.+.. ..+..|+..++... ..++-+|+|+... . .+++.|..|+. ..+.+|+
T Consensus 77 ~i~~L~~---------------~~Q~~L~~~l~~~~-~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~~~~i~lPp 137 (138)
T PF14532_consen 77 NIDRLSP---------------EAQRRLLDLLKRQE-RSNVRLIASSSQDLEELVEEGRFSPDLYYRLSQLEIHLPP 137 (138)
T ss_dssp CGCCS-H---------------HHHHHHHHHHHHCT-TTTSEEEEEECC-CCCHHHHSTHHHHHHHHCSTCEEEE--
T ss_pred ChHHCCH---------------HHHHHHHHHHHhcC-CCCeEEEEEeCCCHHHHhhccchhHHHHHHhCCCEEeCCC
Confidence 9999976 34455666666543 3334444444332 2 24667777764 5667765
No 242
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.55 E-value=6e-07 Score=98.14 Aligned_cols=144 Identities=18% Similarity=0.083 Sum_probs=82.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEE
Q 014376 192 SWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFV 271 (426)
Q Consensus 192 ~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~il 271 (426)
...-+|||.|+||||||.+++.+++......+ .++.+...+++.......-...+.. . .++-.+ .....+++
T Consensus 490 RgdihVLLvGDPGTGKSqLAr~Ih~lspR~~y--tsG~~~s~vgLTa~~~~~d~~tG~~---~-le~GaL--vlAdgGtL 561 (915)
T PTZ00111 490 RGIINVLLCGDPGTAKSQLLHYTHLLSPRSIY--TSGKSSSSVGLTASIKFNESDNGRA---M-IQPGAV--VLANGGVC 561 (915)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHHhCCcccc--CCCCCCccccccchhhhcccccCcc---c-ccCCcE--EEcCCCeE
Confidence 33457999999999999999999986532210 0112222222221110000000000 0 000000 01245799
Q ss_pred EEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhh----c-------CCCcEEEEEEeCCCC-------------cC
Q 014376 272 LIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL----K-------SSPNVIILTTSNITA-------------AI 327 (426)
Q Consensus 272 lIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l----~-------~~~~viVi~TtN~~~-------------~l 327 (426)
+|||++.+.. ..+..|+..|++- . -+.++.||+++|+.. .+
T Consensus 562 ~IDEidkms~---------------~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~L 626 (915)
T PTZ00111 562 CIDELDKCHN---------------ESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINI 626 (915)
T ss_pred EecchhhCCH---------------HHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCC
Confidence 9999999865 3345566666431 1 124689999999852 25
Q ss_pred CHHHhcccCeEE-EeCCCCHHHHHHHHHHHHH
Q 014376 328 DIAFVDRADIKA-YVGPPTLQARYEILRSCLQ 358 (426)
Q Consensus 328 d~al~~R~~~~i-~i~~p~~~~r~~Il~~~l~ 358 (426)
++++++|||.++ .++.|+.+.-..|.++.+.
T Consensus 627 p~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~ 658 (915)
T PTZ00111 627 SPSLFTRFDLIYLVLDHIDQDTDQLISLSIAK 658 (915)
T ss_pred ChHHhhhhcEEEEecCCCChHHHHHHHHHHHH
Confidence 799999999876 5677887766666655554
No 243
>PRK06526 transposase; Provisional
Probab=98.54 E-value=1.1e-07 Score=91.07 Aligned_cols=26 Identities=42% Similarity=0.690 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+++++|+||||||||+|+.+|+..+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHH
Confidence 46799999999999999999998873
No 244
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.53 E-value=3.5e-07 Score=89.96 Aligned_cols=65 Identities=23% Similarity=0.209 Sum_probs=40.2
Q ss_pred ccccccchhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 149 LPAKEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 149 lp~~~~~~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+|..-....|+++...+.-+..+...+ ..|...... -.++++++|+||+|+|||+|+.++|+.+.
T Consensus 117 ~p~~~~~atf~~~~~~~~~~~~~~~~~---~~fi~~~~~---~~~~~gl~L~G~~G~GKThLa~Aia~~l~ 181 (306)
T PRK08939 117 MPKDLLQASLADIDLDDRDRLDALMAA---LDFLEAYPP---GEKVKGLYLYGDFGVGKSYLLAAIANELA 181 (306)
T ss_pred CCHhHhcCcHHHhcCCChHHHHHHHHH---HHHHHHhhc---cCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 565444566777776653333333322 112211100 01257899999999999999999999985
No 245
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.53 E-value=1.3e-06 Score=91.97 Aligned_cols=170 Identities=16% Similarity=0.238 Sum_probs=98.7
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhccccc--CCCCcceEEEE
Q 014376 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS--SRYPQCQLVEV 234 (426)
Q Consensus 157 ~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~--~~~~~~~~i~i 234 (426)
.|++++|....-+.+.+.+. .++..+ ..|||+|++||||+++|++|.+.+..... +...+.+++.+
T Consensus 217 ~f~~iiG~S~~m~~~~~~i~---~~A~s~---------~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 217 VLGDLLGQSPQMEQVRQTIL---LYARSS---------AAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred chhheeeCCHHHHHHHHHHH---HHhCCC---------CcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 46778888776555555543 223222 34999999999999999999887322111 22356788999
Q ss_pred eccccccccccchHHHHHHHHHHHH------------HHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHH
Q 014376 235 NAHSLFSKWFSESGKLVAKLFQKIQ------------EMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNAL 302 (426)
Q Consensus 235 ~~~~l~~~~~~e~~~~v~~~f~~~~------------~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~l 302 (426)
||..+..... -..+|.... .+++ ....+.||||||+.+.. ..+..|
T Consensus 285 nCaal~e~ll------eseLFG~~~gaftga~~~~~~Gl~e-~A~gGTLfLdeI~~Lp~---------------~~Q~kL 342 (538)
T PRK15424 285 NCGAIAESLL------EAELFGYEEGAFTGSRRGGRAGLFE-IAHGGTLFLDEIGEMPL---------------PLQTRL 342 (538)
T ss_pred ecccCChhhH------HHHhcCCccccccCccccccCCchh-ccCCCEEEEcChHhCCH---------------HHHHHH
Confidence 9987642211 111221100 0111 13457899999998876 345566
Q ss_pred HHHhhhhc--C-------CCcEEEEEEeCCCC-------cCCHHHhcccC-eEEEeCCCCH--HHHHHHHHHHHHHH
Q 014376 303 LTQMDKLK--S-------SPNVIILTTSNITA-------AIDIAFVDRAD-IKAYVGPPTL--QARYEILRSCLQEL 360 (426)
Q Consensus 303 l~~ld~l~--~-------~~~viVi~TtN~~~-------~ld~al~~R~~-~~i~i~~p~~--~~r~~Il~~~l~~l 360 (426)
+..++.-. . ..++-+|++||..- .+...+..|+. ..+.+|+... ++...++++++.+.
T Consensus 343 l~~L~e~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~ 419 (538)
T PRK15424 343 LRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQS 419 (538)
T ss_pred HhhhhcCeEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHH
Confidence 66665311 1 12456777776542 13345556653 3455665543 34556677777664
No 246
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.53 E-value=4e-07 Score=83.29 Aligned_cols=52 Identities=19% Similarity=0.305 Sum_probs=36.3
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSK 242 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~ 242 (426)
..|..+.+.-|.||+||||||++|++.+.....- ...-.+-+.+++.++++.
T Consensus 28 l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~--~~r~~G~v~~~g~ni~~~ 79 (253)
T COG1117 28 LDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIP--GARVEGEVLLDGKNIYDP 79 (253)
T ss_pred eeccCCceEEEECCCCcCHHHHHHHHHhhcccCc--CceEEEEEEECCeeccCC
Confidence 3566789999999999999999999988763211 111234566677666553
No 247
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.52 E-value=4.2e-07 Score=81.77 Aligned_cols=31 Identities=29% Similarity=0.466 Sum_probs=28.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 23 ~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 23 LTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 5567799999999999999999999999874
No 248
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.51 E-value=1.1e-06 Score=76.85 Aligned_cols=77 Identities=22% Similarity=0.261 Sum_probs=47.4
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNL 268 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~ 268 (426)
+.+..|..+.|.||+|+|||||++++++.+. +..+-+.++......-.+.-++.. .+...-++.++ ..|
T Consensus 21 ~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~-------~~~G~i~~~~~~~i~~~~~lS~G~-~~rv~laral~---~~p 89 (144)
T cd03221 21 LTINPGDRIGLVGRNGAGKSTLLKLIAGELE-------PDEGIVTWGSTVKIGYFEQLSGGE-KMRLALAKLLL---ENP 89 (144)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCCCC-------CCceEEEECCeEEEEEEccCCHHH-HHHHHHHHHHh---cCC
Confidence 5667799999999999999999999999873 334445555421111111112111 22222333333 478
Q ss_pred EEEEEech
Q 014376 269 VFVLIDEV 276 (426)
Q Consensus 269 ~illIDEi 276 (426)
.++++||-
T Consensus 90 ~illlDEP 97 (144)
T cd03221 90 NLLLLDEP 97 (144)
T ss_pred CEEEEeCC
Confidence 89999994
No 249
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.49 E-value=8.6e-07 Score=84.03 Aligned_cols=31 Identities=39% Similarity=0.532 Sum_probs=27.7
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+|++.+.+.
T Consensus 25 l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~ 55 (254)
T COG1121 25 LSVEKGEITALIGPNGAGKSTLLKAILGLLK 55 (254)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4567789999999999999999999999774
No 250
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.48 E-value=2.3e-06 Score=87.73 Aligned_cols=172 Identities=19% Similarity=0.219 Sum_probs=101.6
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEec
Q 014376 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (426)
Q Consensus 157 ~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (426)
.+..++|....-+++.+.+.. .+... -.|||+|++||||-.+||+|-+... ..+.+++.+||
T Consensus 139 ~~~~liG~S~am~~l~~~i~k---vA~s~---------a~VLI~GESGtGKElvAr~IH~~S~------R~~~PFVavNc 200 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAK---VAPSD---------ASVLITGESGTGKELVARAIHQASP------RAKGPFIAVNC 200 (464)
T ss_pred ccCCceecCHHHHHHHHHHHH---HhCCC---------CCEEEECCCCCcHHHHHHHHHhhCc------ccCCCceeeec
Confidence 456688887776666665532 22222 3499999999999999999987764 23567899999
Q ss_pred ccccc-----ccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc-
Q 014376 237 HSLFS-----KWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK- 310 (426)
Q Consensus 237 ~~l~~-----~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~- 310 (426)
..+-. ..||.....+...-.+-...+ +....+.||||||..+.. .++..||+.+..-.
T Consensus 201 aAip~~l~ESELFGhekGAFTGA~~~r~G~f-E~A~GGTLfLDEI~~mpl---------------~~Q~kLLRvLqe~~~ 264 (464)
T COG2204 201 AAIPENLLESELFGHEKGAFTGAITRRIGRF-EQANGGTLFLDEIGEMPL---------------ELQVKLLRVLQEREF 264 (464)
T ss_pred ccCCHHHHHHHhhcccccCcCCcccccCcce-eEcCCceEEeeccccCCH---------------HHHHHHHHHHHcCee
Confidence 87632 122211100000000000001 113568999999988755 45566777766311
Q ss_pred -C-------CCcEEEEEEeCCCCc-------CCHHHhcccCeEEEeCCCCHHHH----HHHHHHHHHHHHHh
Q 014376 311 -S-------SPNVIILTTSNITAA-------IDIAFVDRADIKAYVGPPTLQAR----YEILRSCLQELIRT 363 (426)
Q Consensus 311 -~-------~~~viVi~TtN~~~~-------ld~al~~R~~~~i~i~~p~~~~r----~~Il~~~l~~l~~~ 363 (426)
+ .-++-||++||..-. +-+.+..|. .++.+..|...+| -.++++++++....
T Consensus 265 ~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRL-nV~~i~iPpLRER~EDIp~L~~hfl~~~~~~ 335 (464)
T COG2204 265 ERVGGNKPIKVDVRIIAATNRDLEEEVAAGRFREDLYYRL-NVVPLRLPPLRERKEDIPLLAEHFLKRFAAE 335 (464)
T ss_pred EecCCCcccceeeEEEeecCcCHHHHHHcCCcHHHHHhhh-ccceecCCcccccchhHHHHHHHHHHHHHHH
Confidence 1 125788999886522 445556676 3455555555444 45667777776553
No 251
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.48 E-value=8.4e-07 Score=83.94 Aligned_cols=45 Identities=33% Similarity=0.454 Sum_probs=39.4
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLF 240 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~ 240 (426)
|.|+||..+++.||+|+||||+.|++.+.+ .|.++.+.+++..-+
T Consensus 45 f~IP~G~ivgflGaNGAGKSTtLKmLTGll-------~p~~G~v~V~G~~Pf 89 (325)
T COG4586 45 FEIPKGEIVGFLGANGAGKSTTLKMLTGLL-------LPTSGKVRVNGKDPF 89 (325)
T ss_pred eecCCCcEEEEEcCCCCcchhhHHHHhCcc-------ccCCCeEEecCcCcc
Confidence 678999999999999999999999999988 567777888886644
No 252
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.48 E-value=1.1e-06 Score=77.77 Aligned_cols=110 Identities=23% Similarity=0.315 Sum_probs=64.6
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccccc-------cccc----chHHHHHHHHHH
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFS-------KWFS----ESGKLVAKLFQK 257 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~-------~~~~----e~~~~v~~~f~~ 257 (426)
+.+..|..+.|.||+|+|||||+++|++.+. +..+.+.+++..+.. ...+ -++.. .+...-
T Consensus 20 ~~i~~g~~~~i~G~nGsGKStll~~l~g~~~-------~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~-~~r~~l 91 (157)
T cd00267 20 LTLKAGEIVALVGPNGSGKSTLLRAIAGLLK-------PTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQ-RQRVAL 91 (157)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-------CCccEEEECCEEcccCCHHHHHhceEEEeeCCHHH-HHHHHH
Confidence 4567789999999999999999999999874 334446666544321 0001 11111 122222
Q ss_pred HHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCC
Q 014376 258 IQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNI 323 (426)
Q Consensus 258 ~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~ 323 (426)
++.++ ..|.++++||...=. +......+.+.+..+...+..++++||+.
T Consensus 92 ~~~l~---~~~~i~ilDEp~~~l--------------D~~~~~~l~~~l~~~~~~~~tii~~sh~~ 140 (157)
T cd00267 92 ARALL---LNPDLLLLDEPTSGL--------------DPASRERLLELLRELAEEGRTVIIVTHDP 140 (157)
T ss_pred HHHHh---cCCCEEEEeCCCcCC--------------CHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 33332 367899999954221 12233445555555544456788888763
No 253
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.47 E-value=2.5e-06 Score=77.26 Aligned_cols=31 Identities=26% Similarity=0.422 Sum_probs=28.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++...
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 23 LELKQGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 5677799999999999999999999999874
No 254
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.46 E-value=1.4e-06 Score=78.99 Aligned_cols=31 Identities=32% Similarity=0.522 Sum_probs=27.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 21 LNIEAGEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5677799999999999999999999998763
No 255
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.46 E-value=1.3e-06 Score=78.66 Aligned_cols=31 Identities=39% Similarity=0.478 Sum_probs=27.8
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||++.|++.+.
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 21 LTVEKGEIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5567789999999999999999999999873
No 256
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.44 E-value=3.9e-06 Score=76.02 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=25.2
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHH
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQ 216 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~ 216 (426)
+.+..|..+.|.||+|+|||||++++..
T Consensus 16 l~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 16 VSIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 5677899999999999999999999964
No 257
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.44 E-value=1.2e-07 Score=85.96 Aligned_cols=103 Identities=20% Similarity=0.327 Sum_probs=57.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccch-HHHHHHHHHHHHHHHHhccCcEEEE
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSES-GKLVAKLFQKIQEMVEEENNLVFVL 272 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~-~~~v~~~f~~~~~~~~~~~~~~ill 272 (426)
+.+++|+||+|+|||+||.++++++-. .+..+..++..+++...-... .......++.. ....+|+
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~------~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l-------~~~dlLi 113 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIR------KGYSVLFITASDLLDELKQSRSDGSYEELLKRL-------KRVDLLI 113 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHH------TT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHH-------HTSSCEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhcc------CCcceeEeecCceeccccccccccchhhhcCcc-------ccccEec
Confidence 578999999999999999999998742 123456777777654322110 01112222222 2446899
Q ss_pred EechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCC
Q 014376 273 IDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNIT 324 (426)
Q Consensus 273 IDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~ 324 (426)
|||+...... ......++..++.-... +. .|.|||..
T Consensus 114 lDDlG~~~~~-------------~~~~~~l~~ii~~R~~~-~~-tIiTSN~~ 150 (178)
T PF01695_consen 114 LDDLGYEPLS-------------EWEAELLFEIIDERYER-KP-TIITSNLS 150 (178)
T ss_dssp EETCTSS----------------HHHHHCTHHHHHHHHHT--E-EEEEESS-
T ss_pred ccccceeeec-------------ccccccchhhhhHhhcc-cC-eEeeCCCc
Confidence 9997543221 12344566666654443 33 34477865
No 258
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.44 E-value=1.1e-06 Score=82.05 Aligned_cols=120 Identities=22% Similarity=0.237 Sum_probs=64.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc-ccccC------CCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhcc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLS-IRFSS------RYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEEN 266 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~-~~~~~------~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~ 266 (426)
+..+||||+||+||||+|+.+++..- ..... ..+...++.++. ..+-..+...+... -....
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~~~~~~~d~~~~~l~g~~~~~v~~~d~--------~~~~~~~~d~l~~~---~~~~~ 80 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGKTLVLSFDMSSKVLIGDENVDIADHDD--------MPPIQAMVEFYVMQ---NIQAV 80 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCCCEEEeccccchhccCCCCCceeecCC--------CCCHHHHHHHHHHH---Hhccc
Confidence 35699999999999999999974321 00000 000011111111 11111222222211 11234
Q ss_pred CcEEEEEechhhHHH------HhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCC
Q 014376 267 NLVFVLIDEVESLAA------ARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNIT 324 (426)
Q Consensus 267 ~~~illIDEid~l~~------~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~ 324 (426)
....|+||.++.+.. .+.......+..+-..+.+.++..+..+...+.-||+++|...
T Consensus 81 ~ydtVVIDsI~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~~g~nII~tAhe~~ 144 (220)
T TIGR01618 81 KYDNIVIDNISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKESNKNIYATAWELT 144 (220)
T ss_pred cCCEEEEecHHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEEeecc
Confidence 567899999998765 2222111113344456677788888888777766777776643
No 259
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=1.4e-06 Score=82.84 Aligned_cols=133 Identities=15% Similarity=0.126 Sum_probs=82.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccc----cCCCCcceEEEEecccccccccc----chHHHHHHHHHHHHHHHHhc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRF----SSRYPQCQLVEVNAHSLFSKWFS----ESGKLVAKLFQKIQEMVEEE 265 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~----~~~~~~~~~i~i~~~~l~~~~~~----e~~~~v~~~f~~~~~~~~~~ 265 (426)
+..+||+||.|+||..+|.++|+.+-..- ++..+.|..+.-..|.-+.-.+. -....++.+-+.+....-..
T Consensus 7 ~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e~ 86 (261)
T PRK05818 7 THPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVES 86 (261)
T ss_pred CcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchhc
Confidence 46799999999999999999999884321 11112222111111111000000 11222333333222110011
Q ss_pred cCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCC
Q 014376 266 NNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPP 344 (426)
Q Consensus 266 ~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p 344 (426)
....|++|+++|.+.. ...|+||+.++. +++++++|.+|+.++.+-+.+++|+ ..+.++.+
T Consensus 87 ~~~KV~II~~ae~m~~---------------~AaNaLLK~LEE--Pp~~t~fiLit~~~~~lLpTI~SRC-q~~~~~~~ 147 (261)
T PRK05818 87 NGKKIYIIYGIEKLNK---------------QSANSLLKLIEE--PPKNTYGIFTTRNENNILNTILSRC-VQYVVLSK 147 (261)
T ss_pred CCCEEEEeccHhhhCH---------------HHHHHHHHhhcC--CCCCeEEEEEECChHhCchHhhhhe-eeeecCCh
Confidence 2468999999999976 567999999987 6778888888899999999999998 45666665
No 260
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.43 E-value=8e-08 Score=90.80 Aligned_cols=31 Identities=39% Similarity=0.538 Sum_probs=28.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..++|+||+|+|||||++.+++.+.
T Consensus 25 ~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~ 55 (235)
T COG1122 25 LEIEKGERVLLIGPNGSGKSTLLKLLNGLLK 55 (235)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCcCc
Confidence 5567789999999999999999999999884
No 261
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.42 E-value=1.8e-06 Score=79.84 Aligned_cols=29 Identities=14% Similarity=0.296 Sum_probs=25.0
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 190 LVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (426)
.+..++.++|.||+|+|||||+|.++...
T Consensus 21 ~l~~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 21 DMEKKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred EEcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 34457899999999999999999999755
No 262
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.42 E-value=2.6e-06 Score=77.45 Aligned_cols=31 Identities=35% Similarity=0.377 Sum_probs=28.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||++.|++.+.
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 21 FEVRAGEIVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5677799999999999999999999999874
No 263
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.40 E-value=1.6e-06 Score=76.52 Aligned_cols=44 Identities=25% Similarity=0.455 Sum_probs=34.3
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (426)
+.+..|..++|.||+|||||||.|++|.... |+.+.+...+.++
T Consensus 24 l~v~~Ge~iaitGPSG~GKStllk~va~Lis-------p~~G~l~f~Ge~v 67 (223)
T COG4619 24 LSVRAGEFIAITGPSGCGKSTLLKIVASLIS-------PTSGTLLFEGEDV 67 (223)
T ss_pred eeecCCceEEEeCCCCccHHHHHHHHHhccC-------CCCceEEEcCccc
Confidence 4566789999999999999999999999884 4445555555443
No 264
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.39 E-value=6.3e-06 Score=82.69 Aligned_cols=90 Identities=23% Similarity=0.368 Sum_probs=56.5
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccc----------------cccccccchHHHHH-
Q 014376 190 LVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS----------------LFSKWFSESGKLVA- 252 (426)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~----------------l~~~~~~e~~~~v~- 252 (426)
.|..|...+|.||||+|||||++.|++..... .++...+.+...+ +.+.+-......+.
T Consensus 165 PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~n----hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~ 240 (416)
T PRK09376 165 PIGKGQRGLIVAPPKAGKTVLLQNIANSITTN----HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQV 240 (416)
T ss_pred ccccCceEEEeCCCCCChhHHHHHHHHHHHhh----cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHH
Confidence 35678889999999999999999999988653 1233322222211 11222122223332
Q ss_pred --HHHHHHHHHHHhccCcEEEEEechhhHHHHhh
Q 014376 253 --KLFQKIQEMVEEENNLVFVLIDEVESLAAARK 284 (426)
Q Consensus 253 --~~f~~~~~~~~~~~~~~illIDEid~l~~~r~ 284 (426)
.++..++.+. +....++||+||+.+++....
T Consensus 241 a~~~ie~Ae~~~-e~G~dVlL~iDsItR~arAqr 273 (416)
T PRK09376 241 AEMVIEKAKRLV-EHGKDVVILLDSITRLARAYN 273 (416)
T ss_pred HHHHHHHHHHHH-HcCCCEEEEEEChHHHHHHHH
Confidence 4445555554 456779999999999987654
No 265
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.38 E-value=5.3e-06 Score=79.25 Aligned_cols=130 Identities=20% Similarity=0.341 Sum_probs=70.8
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecc------cc---------ccccccch-HH---H
Q 014376 190 LVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH------SL---------FSKWFSES-GK---L 250 (426)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~------~l---------~~~~~~e~-~~---~ 250 (426)
.+.+|..++|.||+|+|||||++.+++.+.... +....++.+... ++ .+. .+++ .. .
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~---fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~-~~~~~~~~~~~ 87 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTLLQSIANAITKNH---PEVYLIVLLIDERPEEVTDMQRSVKGEVIAST-FDEPPERHVQV 87 (249)
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhcccccc---CCeEEEEEEccCCCccHHHHHHHhccEEEEec-CCCCHHHHHHH
Confidence 466789999999999999999999999886431 111112222221 01 111 1212 11 2
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhh-------hccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCC
Q 014376 251 VAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKA-------ALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNI 323 (426)
Q Consensus 251 v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~-------~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~ 323 (426)
...+...+..+. ..+..+++++||+.++...... .+++|++...-....+++..-..+...+.+.++.|...
T Consensus 88 ~~~~~~~a~~~~-~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l~T~~~ 166 (249)
T cd01128 88 AEMVLEKAKRLV-EHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTIIATALV 166 (249)
T ss_pred HHHHHHHHHHHH-HCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEeeehee
Confidence 223344444433 3467899999999998765422 23344433333333344433223334566777766554
Q ss_pred C
Q 014376 324 T 324 (426)
Q Consensus 324 ~ 324 (426)
.
T Consensus 167 d 167 (249)
T cd01128 167 D 167 (249)
T ss_pred c
Confidence 3
No 266
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.38 E-value=2.4e-06 Score=79.75 Aligned_cols=42 Identities=17% Similarity=0.266 Sum_probs=34.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (426)
+.+..|..+-|.|++|||||||+|++++.... +.+-+.+++.
T Consensus 28 ~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p-------~~G~I~~~G~ 69 (252)
T COG1124 28 LEIERGETLGIVGESGSGKSTLARLLAGLEKP-------SSGSILLDGK 69 (252)
T ss_pred EEecCCCEEEEEcCCCCCHHHHHHHHhcccCC-------CCceEEECCc
Confidence 67788999999999999999999999998843 3444555553
No 267
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.37 E-value=1e-06 Score=93.65 Aligned_cols=190 Identities=13% Similarity=0.053 Sum_probs=105.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcc--cccCCCCcceEEEEeccccccccccchHHHHHHHHHHHH-----HHHHhccC
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSI--RFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQ-----EMVEEENN 267 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~--~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~-----~~~~~~~~ 267 (426)
.+|+|-|+.|+|||+++++++..+.. +| +.+.-+---...+|.. .+......-+ ..+ ...+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~---------r~~p~~~t~~~L~Gg~--Dl~~~l~~g~~~~~pGll-a~Ah 93 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPL---------RRLPPGIADDRLLGGL--DLAATLRAGRPVAQRGLL-AEAD 93 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCc---------ccCCCCCcHHHccCCc--hHHhHhhcCCcCCCCCce-eecc
Confidence 57999999999999999999999854 33 2111111001111110 0111110000 000 1134
Q ss_pred cEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhh-----------hcCCCcEEEEEEeCCC---CcCCHHHhc
Q 014376 268 LVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK-----------LKSSPNVIILTTSNIT---AAIDIAFVD 333 (426)
Q Consensus 268 ~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~-----------l~~~~~viVi~TtN~~---~~ld~al~~ 333 (426)
..|||+||+..+.. .+++.|+..|+. +....++++|+|.|.. ..+..++++
T Consensus 94 ~GvL~lDe~n~~~~---------------~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD 158 (584)
T PRK13406 94 GGVLVLAMAERLEP---------------GTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD 158 (584)
T ss_pred CCEEEecCcccCCH---------------HHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh
Confidence 57999999988765 567788888773 1223568888885433 347899999
Q ss_pred ccCeEEEeCCCCHHHHHHH--HHHHHHHHHHhCccccCCCCCCCchhhHHHHhhccCchHHHHhh-hhHHHHHHHHHHHH
Q 014376 334 RADIKAYVGPPTLQARYEI--LRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEAD-RSQHFYKQLLEAAE 410 (426)
Q Consensus 334 R~~~~i~i~~p~~~~r~~I--l~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~s~~di~~~~-~~~~~~~~L~~~a~ 410 (426)
||+..+.++.++..+..+- ....+.+... .+.. .......+..+...+.. .. .+.+....++++|+
T Consensus 159 Rf~l~v~v~~~~~~~~~~~~~~~~~I~~AR~--rl~~-v~v~~~~l~~i~~~~~~--------~gv~S~Ra~i~llraAR 227 (584)
T PRK13406 159 RLAFHLDLDGLALRDAREIPIDADDIAAARA--RLPA-VGPPPEAIAALCAAAAA--------LGIASLRAPLLALRAAR 227 (584)
T ss_pred heEEEEEcCCCChHHhcccCCCHHHHHHHHH--HHcc-CCCCHHHHHHHHHHHHH--------hCCCCcCHHHHHHHHHH
Confidence 9999999999886543210 0000000000 0000 01111112222222111 11 14456778999999
Q ss_pred HcccCCCcceee
Q 014376 411 ACEVRNKMFHLI 422 (426)
Q Consensus 411 ~~~glsgr~~~~ 422 (426)
+.+.|.||.+..
T Consensus 228 a~AaL~Gr~~V~ 239 (584)
T PRK13406 228 AAAALAGRTAVE 239 (584)
T ss_pred HHHHHcCCCCCC
Confidence 999999998754
No 268
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.36 E-value=1.8e-06 Score=84.64 Aligned_cols=43 Identities=40% Similarity=0.430 Sum_probs=35.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (426)
+.+..|..+.|.||+|+|||||.++|++.+. |..+-+.+++.+
T Consensus 26 ~~i~~Gei~gllG~NGAGKTTllk~l~gl~~-------p~~G~i~i~G~~ 68 (293)
T COG1131 26 FEVEPGEIFGLLGPNGAGKTTLLKILAGLLK-------PTSGEILVLGYD 68 (293)
T ss_pred EEEcCCeEEEEECCCCCCHHHHHHHHhCCcC-------CCceEEEEcCEe
Confidence 5677899999999999999999999999984 445556666544
No 269
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.36 E-value=5.8e-06 Score=76.45 Aligned_cols=29 Identities=21% Similarity=0.440 Sum_probs=24.8
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHH
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQK 217 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~ 217 (426)
+.+..++.++|.||+|+||||++++++..
T Consensus 24 ~~l~~~~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 24 INLGSGRLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred EEEcCCeEEEEECCCCCccHHHHHHHHHH
Confidence 44556788999999999999999999943
No 270
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.36 E-value=1.7e-06 Score=83.01 Aligned_cols=103 Identities=23% Similarity=0.397 Sum_probs=59.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHH--HH-HHHHhccCcEE
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQK--IQ-EMVEEENNLVF 270 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~--~~-~~~~~~~~~~i 270 (426)
+.+++|+||||+|||+|+-||++.+.. . +..+..++..+++.. +...|.. .. .+........+
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~-~-----g~sv~f~~~~el~~~--------Lk~~~~~~~~~~~l~~~l~~~dl 170 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLK-A-----GISVLFITAPDLLSK--------LKAAFDEGRLEEKLLRELKKVDL 170 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHH-c-----CCeEEEEEHHHHHHH--------HHHHHhcCchHHHHHHHhhcCCE
Confidence 567999999999999999999999952 1 234566666665432 2222221 11 11111235579
Q ss_pred EEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCC
Q 014376 271 VLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITA 325 (426)
Q Consensus 271 llIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~ 325 (426)
|+|||+...... ....+.++..+......... +.|+|.+.
T Consensus 171 LIiDDlG~~~~~-------------~~~~~~~~q~I~~r~~~~~~--~~tsN~~~ 210 (254)
T COG1484 171 LIIDDIGYEPFS-------------QEEADLLFQLISRRYESRSL--IITSNLSF 210 (254)
T ss_pred EEEecccCccCC-------------HHHHHHHHHHHHHHHhhccc--eeecCCCh
Confidence 999997654321 12233444455544443444 67778764
No 271
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.36 E-value=1.5e-06 Score=89.36 Aligned_cols=165 Identities=20% Similarity=0.263 Sum_probs=99.5
Q ss_pred chhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEE
Q 014376 155 DGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEV 234 (426)
Q Consensus 155 ~~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i 234 (426)
...|+++++....-.++++.++ .++.. ...|||.|.+||||..+|++|-+... ..+.+++.+
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~ak---r~A~t---------dstVLi~GESGTGKElfA~~IH~~S~------R~~~PFIai 302 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAK---RIAKT---------DSTVLILGESGTGKELFARAIHNLSP------RANGPFIAI 302 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHH---hhcCC---------CCcEEEecCCCccHHHHHHHHHhcCc------ccCCCeEEE
Confidence 3568889998876655555543 22222 24599999999999999999988764 346788999
Q ss_pred eccccc-----cccccchHHHH--------HHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHH
Q 014376 235 NAHSLF-----SKWFSESGKLV--------AKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNA 301 (426)
Q Consensus 235 ~~~~l~-----~~~~~e~~~~v--------~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ 301 (426)
||..+- +..||.....+ ..+|+. .+.+-||+|||..+.- ..+..
T Consensus 303 NCaAiPe~LlESELFGye~GAFTGA~~~GK~GlfE~--------A~gGTLFLDEIgempl---------------~LQaK 359 (560)
T COG3829 303 NCAAIPETLLESELFGYEKGAFTGASKGGKPGLFEL--------ANGGTLFLDEIGEMPL---------------PLQAK 359 (560)
T ss_pred ecccCCHHHHHHHHhCcCCccccccccCCCCcceee--------ccCCeEEehhhccCCH---------------HHHHH
Confidence 997653 12222211111 112222 2447899999987754 45566
Q ss_pred HHHHhhhh--c-------CCCcEEEEEEeCCCC-------cCCHHHhcccCeEEEeCCCCHHHH----HHHHHHHHHHHH
Q 014376 302 LLTQMDKL--K-------SSPNVIILTTSNITA-------AIDIAFVDRADIKAYVGPPTLQAR----YEILRSCLQELI 361 (426)
Q Consensus 302 ll~~ld~l--~-------~~~~viVi~TtN~~~-------~ld~al~~R~~~~i~i~~p~~~~r----~~Il~~~l~~l~ 361 (426)
||+.|+.- . .+-.+-||++||..- .+-..+.-|.. ++.+..|...+| ..+...++.+..
T Consensus 360 LLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLN-V~~i~iPPLReR~eDI~~L~~~Fl~k~s 438 (560)
T COG3829 360 LLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLN-VIPITIPPLRERKEDIPLLAEYFLDKFS 438 (560)
T ss_pred HHHHHhhceEEecCCCCceeeEEEEEeccCcCHHHHHhcCcchhhheeeec-eeeecCCCcccCcchHHHHHHHHHHHHH
Confidence 77776631 1 113588999999752 13344445653 444555554444 344455555543
No 272
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.36 E-value=7.5e-06 Score=84.78 Aligned_cols=140 Identities=22% Similarity=0.263 Sum_probs=84.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHH-----------HHH
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQE-----------MVE 263 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~-----------~~~ 263 (426)
..++|+|++||||+++|+++..... .....++.++|..+...+ .-..+|...+. .++
T Consensus 163 ~~vli~Ge~GtGK~~lA~~ih~~s~------~~~~~~v~v~c~~~~~~~------~~~~lfg~~~~~~~~~~~~~~g~~~ 230 (445)
T TIGR02915 163 ITVLLLGESGTGKEVLARALHQLSD------RKDKRFVAINCAAIPENL------LESELFGYEKGAFTGAVKQTLGKIE 230 (445)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCC------cCCCCeEEEECCCCChHH------HHHHhcCCCCCCcCCCccCCCCcee
Confidence 4499999999999999999987653 234567999998763211 11122221100 011
Q ss_pred hccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc--C-------CCcEEEEEEeCCC-------CcC
Q 014376 264 EENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK--S-------SPNVIILTTSNIT-------AAI 327 (426)
Q Consensus 264 ~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~--~-------~~~viVi~TtN~~-------~~l 327 (426)
....+.|+|||++.+.. ..+..|++.++.-. . ..++.+|+|++.. ..+
T Consensus 231 -~a~~gtl~l~~i~~l~~---------------~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~ 294 (445)
T TIGR02915 231 -YAHGGTLFLDEIGDLPL---------------NLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTF 294 (445)
T ss_pred -ECCCCEEEEechhhCCH---------------HHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCc
Confidence 13457899999998876 34556666665311 1 1256777777765 335
Q ss_pred CHHHhcccC-eEEEeCCCCH--HHHHHHHHHHHHHHHH
Q 014376 328 DIAFVDRAD-IKAYVGPPTL--QARYEILRSCLQELIR 362 (426)
Q Consensus 328 d~al~~R~~-~~i~i~~p~~--~~r~~Il~~~l~~l~~ 362 (426)
.+.+..|+. ..+.+|+... +....+++++++++..
T Consensus 295 ~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~ 332 (445)
T TIGR02915 295 REDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFAR 332 (445)
T ss_pred cHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHH
Confidence 666667763 3455555432 2334566777776543
No 273
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.35 E-value=4e-06 Score=75.10 Aligned_cols=31 Identities=42% Similarity=0.612 Sum_probs=28.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||++++++.+.
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 22 FEIKPGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5667799999999999999999999999874
No 274
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.35 E-value=2.7e-06 Score=79.27 Aligned_cols=44 Identities=20% Similarity=0.374 Sum_probs=36.5
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (426)
+.+..|+.+.+.||+|||||||.|.|.+.+ .|+.+-+.+.+.++
T Consensus 29 l~V~~Gei~~iiGgSGsGKStlLr~I~Gll-------~P~~GeI~i~G~~i 72 (263)
T COG1127 29 LDVPRGEILAILGGSGSGKSTLLRLILGLL-------RPDKGEILIDGEDI 72 (263)
T ss_pred eeecCCcEEEEECCCCcCHHHHHHHHhccC-------CCCCCeEEEcCcch
Confidence 567779999999999999999999999998 45566677776554
No 275
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.34 E-value=2.5e-07 Score=93.12 Aligned_cols=31 Identities=19% Similarity=0.454 Sum_probs=28.5
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|||||||+++|++...
T Consensus 14 ~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~ 44 (363)
T TIGR01186 14 LAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE 44 (363)
T ss_pred EEEcCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 5677899999999999999999999999884
No 276
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.34 E-value=1.5e-06 Score=85.73 Aligned_cols=31 Identities=32% Similarity=0.392 Sum_probs=28.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 28 l~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~ 58 (306)
T PRK13537 28 FHVQRGECFGLLGPNGAGKTTTLRMLLGLTH 58 (306)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5677799999999999999999999999874
No 277
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.32 E-value=5e-06 Score=76.94 Aligned_cols=31 Identities=35% Similarity=0.473 Sum_probs=27.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 21 LDLYAGEIIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5567799999999999999999999999873
No 278
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.32 E-value=5.9e-07 Score=91.61 Aligned_cols=31 Identities=39% Similarity=0.558 Sum_probs=28.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+|+|++.+.
T Consensus 24 ~~i~~Geiv~liGpNGaGKSTLLk~LaGll~ 54 (402)
T PRK09536 24 LSVREGSLVGLVGPNGAGKTTLLRAINGTLT 54 (402)
T ss_pred EEECCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 5677799999999999999999999999874
No 279
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.32 E-value=1.8e-06 Score=86.88 Aligned_cols=31 Identities=29% Similarity=0.454 Sum_probs=27.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++||+...
T Consensus 25 l~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~ 55 (356)
T PRK11650 25 LDVADGEFIVLVGPSGCGKSTLLRMVAGLER 55 (356)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHHCCCC
Confidence 5667789999999999999999999999873
No 280
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.31 E-value=1.7e-06 Score=86.90 Aligned_cols=31 Identities=35% Similarity=0.471 Sum_probs=27.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++||+...
T Consensus 25 ~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~ 55 (353)
T TIGR03265 25 LSVKKGEFVCLLGPSGCGKTTLLRIIAGLER 55 (353)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHCCCC
Confidence 5566799999999999999999999999873
No 281
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.31 E-value=1.4e-06 Score=81.35 Aligned_cols=31 Identities=26% Similarity=0.443 Sum_probs=27.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 24 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 24 FHITKGEMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5567799999999999999999999999874
No 282
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.30 E-value=1.4e-06 Score=79.58 Aligned_cols=31 Identities=29% Similarity=0.443 Sum_probs=28.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 13 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 13 FAAERGEVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5677799999999999999999999999874
No 283
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.30 E-value=2.2e-05 Score=82.41 Aligned_cols=56 Identities=29% Similarity=0.456 Sum_probs=40.2
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccc
Q 014376 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (426)
Q Consensus 158 ~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (426)
.++|+....-.+.+..++..... +-. ..+.++|+||+||||||+++.||++++...
T Consensus 18 ~~eLavhkkKv~eV~~wl~~~~~----~~~-----~~~iLlLtGP~G~GKtttv~~La~elg~~v 73 (519)
T PF03215_consen 18 LDELAVHKKKVEEVRSWLEEMFS----GSS-----PKRILLLTGPSGCGKTTTVKVLAKELGFEV 73 (519)
T ss_pred HHHhhccHHHHHHHHHHHHHHhc----cCC-----CcceEEEECCCCCCHHHHHHHHHHHhCCee
Confidence 35566666666667777654321 211 246899999999999999999999998654
No 284
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.30 E-value=1.1e-05 Score=78.64 Aligned_cols=136 Identities=15% Similarity=0.184 Sum_probs=82.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccc------cCCCCcceEEEEeccccccccccc-----hHHHHHHHHHHHHHHHH
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRF------SSRYPQCQLVEVNAHSLFSKWFSE-----SGKLVAKLFQKIQEMVE 263 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~------~~~~~~~~~i~i~~~~l~~~~~~e-----~~~~v~~~f~~~~~~~~ 263 (426)
..+||+|| .||+++|+.+|+.+-..- ++.+..|..+.-+.|.-+ .++.. ....++.+...+... .
T Consensus 25 hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~-~~i~p~~~~I~idqIR~l~~~~~~~-p 100 (290)
T PRK07276 25 HAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDV-TVIEPQGQVIKTDTIRELVKNFSQS-G 100 (290)
T ss_pred eeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCe-eeecCCCCcCCHHHHHHHHHHHhhC-c
Confidence 56999996 689999999999884321 111111111111111100 01110 122333333332221 1
Q ss_pred hccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCC
Q 014376 264 EENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGP 343 (426)
Q Consensus 264 ~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~ 343 (426)
......|++||++|.+.. ...|+||+.++. +.+++++|.+++.++.+-+.+++|+ ..+.|+.
T Consensus 101 ~~~~~kV~II~~ad~m~~---------------~AaNaLLKtLEE--Pp~~t~~iL~t~~~~~lLpTI~SRc-q~i~f~~ 162 (290)
T PRK07276 101 YEGKQQVFIIKDADKMHV---------------NAANSLLKVIEE--PQSEIYIFLLTNDENKVLPTIKSRT-QIFHFPK 162 (290)
T ss_pred ccCCcEEEEeehhhhcCH---------------HHHHHHHHHhcC--CCCCeEEEEEECChhhCchHHHHcc-eeeeCCC
Confidence 124557999999999976 567999999887 5566888888888888889999999 6777766
Q ss_pred CCHHHHHHHH
Q 014376 344 PTLQARYEIL 353 (426)
Q Consensus 344 p~~~~r~~Il 353 (426)
+.+...+++
T Consensus 163 -~~~~~~~~L 171 (290)
T PRK07276 163 -NEAYLIQLL 171 (290)
T ss_pred -cHHHHHHHH
Confidence 555444444
No 285
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.29 E-value=1.3e-06 Score=80.95 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=27.8
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (208)
T cd03268 21 LHVKKGEIYGFLGPNGAGKTTTMKIILGLIK 51 (208)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 5667799999999999999999999999873
No 286
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.29 E-value=4.5e-06 Score=83.48 Aligned_cols=31 Identities=29% Similarity=0.464 Sum_probs=28.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 62 ~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~ 92 (340)
T PRK13536 62 FTVASGECFGLLGPNGAGKSTIARMILGMTS 92 (340)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 5677799999999999999999999999874
No 287
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.28 E-value=1.4e-06 Score=80.97 Aligned_cols=31 Identities=32% Similarity=0.577 Sum_probs=27.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 22 ~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 22 LTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4567799999999999999999999999874
No 288
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.28 E-value=2.3e-06 Score=85.94 Aligned_cols=31 Identities=29% Similarity=0.461 Sum_probs=27.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|||||||+++||+...
T Consensus 27 l~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~ 57 (351)
T PRK11432 27 LTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK 57 (351)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHHCCCC
Confidence 4567789999999999999999999999884
No 289
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.27 E-value=2.3e-06 Score=86.62 Aligned_cols=31 Identities=26% Similarity=0.446 Sum_probs=27.8
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|||||||+++||+...
T Consensus 35 l~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~ 65 (375)
T PRK09452 35 LTINNGEFLTLLGPSGCGKTTVLRLIAGFET 65 (375)
T ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4566789999999999999999999999874
No 290
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.27 E-value=1.2e-05 Score=74.51 Aligned_cols=31 Identities=35% Similarity=0.624 Sum_probs=28.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|+.+.|.||+|+|||||++.|++...
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (207)
T PRK13539 23 FTLAAGEALVLTGPNGSGKTTLLRLIAGLLP 53 (207)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5677899999999999999999999999874
No 291
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.27 E-value=1.2e-05 Score=74.45 Aligned_cols=31 Identities=39% Similarity=0.589 Sum_probs=28.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||++.|++.+.
T Consensus 22 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (204)
T PRK13538 22 FTLNAGELVQIEGPNGAGKTSLLRILAGLAR 52 (204)
T ss_pred EEECCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5567799999999999999999999999874
No 292
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.27 E-value=5.2e-06 Score=81.72 Aligned_cols=31 Identities=32% Similarity=0.471 Sum_probs=28.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 14 ~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~ 44 (302)
T TIGR01188 14 FKVREGEVFGFLGPNGAGKTTTIRMLTTLLR 44 (302)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5677799999999999999999999999873
No 293
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.27 E-value=1.3e-05 Score=86.00 Aligned_cols=49 Identities=31% Similarity=0.434 Sum_probs=41.6
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
.+|+.+++++++++.|...+.. +++++|+|||||||||+++++++.+..
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~----------------~~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQ----------------RRHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHh----------------CCeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 5899999999999988765542 346999999999999999999998853
No 294
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.26 E-value=1.7e-05 Score=77.80 Aligned_cols=135 Identities=16% Similarity=0.135 Sum_probs=86.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccc-----cCCCCcceEEEEe--ccccccccccchHHHHHHHHHHHHHHHHhccC
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRF-----SSRYPQCQLVEVN--AHSLFSKWFSESGKLVAKLFQKIQEMVEEENN 267 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~-----~~~~~~~~~i~i~--~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~ 267 (426)
..+||+|+.|.||+++++.+++.+-... ....|. .++.++ +.. -....++.+.+.+.-..-....
T Consensus 19 haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~-n~~~~d~~g~~-------i~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 19 HSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPA-NIILFDIFDKD-------LSKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCc-ceEEeccCCCc-------CCHHHHHHHHHHhccCCcccCC
Confidence 5689999999999999999999983211 000110 122222 111 0112233333332211101136
Q ss_pred cEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHH
Q 014376 268 LVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQ 347 (426)
Q Consensus 268 ~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~ 347 (426)
..|++||++|.+.. ...|+|++.|+. +++++++|.+++.+..+-+++++|+ ..+.+.+++.+
T Consensus 91 ~KvvII~~~e~m~~---------------~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~SRc-~~~~f~~l~~~ 152 (299)
T PRK07132 91 KKILIIKNIEKTSN---------------SLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVSRC-QVFNVKEPDQQ 152 (299)
T ss_pred ceEEEEecccccCH---------------HHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHhCe-EEEECCCCCHH
Confidence 68999999987754 467899999987 4566666666667788888999998 78899999888
Q ss_pred HHHHHHHH
Q 014376 348 ARYEILRS 355 (426)
Q Consensus 348 ~r~~Il~~ 355 (426)
+..+.+..
T Consensus 153 ~l~~~l~~ 160 (299)
T PRK07132 153 KILAKLLS 160 (299)
T ss_pred HHHHHHHH
Confidence 87766654
No 295
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.26 E-value=2.5e-06 Score=85.93 Aligned_cols=31 Identities=29% Similarity=0.448 Sum_probs=27.5
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++||+...
T Consensus 26 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 56 (362)
T TIGR03258 26 LEIEAGELLALIGKSGCGKTTLLRAIAGFVK 56 (362)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4566789999999999999999999999773
No 296
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.26 E-value=6.9e-06 Score=75.82 Aligned_cols=30 Identities=27% Similarity=0.509 Sum_probs=27.2
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (426)
+.+..|..+.|.||+|+|||||++.|++..
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (200)
T cd03217 21 LTIKKGEVHALMGPNGSGKSTLAKTIMGHP 50 (200)
T ss_pred eEECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 566779999999999999999999999974
No 297
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.26 E-value=1e-05 Score=74.74 Aligned_cols=27 Identities=33% Similarity=0.550 Sum_probs=23.4
Q ss_pred ccccCC-cEEEEEcCCCCcHHHHHHHHH
Q 014376 189 FLVSWN-RIVLLHGPPGTGKTSLCKALA 215 (426)
Q Consensus 189 ~~i~~~-~~vLL~GPpGtGKTtLaralA 215 (426)
+.+..+ +.++|.||+|+|||||+|.++
T Consensus 22 ~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 22 IQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEECCCceEEEEECCCCCChHHHHHHHH
Confidence 455566 579999999999999999998
No 298
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.26 E-value=3.9e-06 Score=79.83 Aligned_cols=112 Identities=17% Similarity=0.230 Sum_probs=73.6
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHH-----------
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQK----------- 257 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~----------- 257 (426)
|.+..|+.+.|.|.+||||||++|++.+... |..+-+.+++.++......+..+.+.++++.
T Consensus 34 f~i~~ge~~glVGESG~GKSTlgr~i~~L~~-------pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ry 106 (268)
T COG4608 34 FSIKEGETLGLVGESGCGKSTLGRLILGLEE-------PTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRY 106 (268)
T ss_pred EEEcCCCEEEEEecCCCCHHHHHHHHHcCcC-------CCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcC
Confidence 6788899999999999999999999999884 5566688887665432211222223333332
Q ss_pred --------------HHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCC-CcEEEEEEeC
Q 014376 258 --------------IQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS-PNVIILTTSN 322 (426)
Q Consensus 258 --------------~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~-~~viVi~TtN 322 (426)
++.+ .-.|.+++.||..+.... .+..+.++.|..++.. +...++.||+
T Consensus 107 PhelSGGQrQRi~IARAL---al~P~liV~DEpvSaLDv--------------SiqaqIlnLL~dlq~~~~lt~lFIsHD 169 (268)
T COG4608 107 PHELSGGQRQRIGIARAL---ALNPKLIVADEPVSALDV--------------SVQAQILNLLKDLQEELGLTYLFISHD 169 (268)
T ss_pred CcccCchhhhhHHHHHHH---hhCCcEEEecCchhhcch--------------hHHHHHHHHHHHHHHHhCCeEEEEEEE
Confidence 2222 247889999997766542 3445566666666544 5677777876
Q ss_pred CC
Q 014376 323 IT 324 (426)
Q Consensus 323 ~~ 324 (426)
..
T Consensus 170 L~ 171 (268)
T COG4608 170 LS 171 (268)
T ss_pred HH
Confidence 43
No 299
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.25 E-value=1e-05 Score=75.05 Aligned_cols=31 Identities=32% Similarity=0.439 Sum_probs=27.8
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 21 FSVEKGEIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5567799999999999999999999999873
No 300
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.24 E-value=3e-06 Score=70.25 Aligned_cols=26 Identities=42% Similarity=0.783 Sum_probs=22.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcccc
Q 014376 197 VLLHGPPGTGKTSLCKALAQKLSIRF 222 (426)
Q Consensus 197 vLL~GPpGtGKTtLaralA~~l~~~~ 222 (426)
|.|+||||+|||++++.|+..+...+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 57999999999999999999986543
No 301
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.24 E-value=1.1e-05 Score=84.13 Aligned_cols=140 Identities=19% Similarity=0.264 Sum_probs=87.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHH-----------HHH
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQE-----------MVE 263 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~-----------~~~ 263 (426)
..++|.|++|||||++|+++..... ..+..++.++|..+... .....+|..... .++
T Consensus 162 ~~vli~Ge~GtGK~~lA~~ih~~s~------~~~~~~i~i~c~~~~~~------~~~~~lfg~~~g~~~~~~~~~~g~~~ 229 (469)
T PRK10923 162 ISVLINGESGTGKELVAHALHRHSP------RAKAPFIALNMAAIPKD------LIESELFGHEKGAFTGANTIRQGRFE 229 (469)
T ss_pred CeEEEEeCCCCcHHHHHHHHHhcCC------CCCCCeEeeeCCCCCHH------HHHHHhcCCCCCCCCCCCcCCCCCee
Confidence 4599999999999999999988653 34567899999876321 111222221100 011
Q ss_pred hccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc--C-------CCcEEEEEEeCCC-------CcC
Q 014376 264 EENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK--S-------SPNVIILTTSNIT-------AAI 327 (426)
Q Consensus 264 ~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~--~-------~~~viVi~TtN~~-------~~l 327 (426)
....+.+||||++.+.. ..+..|+..++.-. . ..++.||+|++.. ..+
T Consensus 230 -~a~~Gtl~l~~i~~l~~---------------~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~ 293 (469)
T PRK10923 230 -QADGGTLFLDEIGDMPL---------------DVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKF 293 (469)
T ss_pred -ECCCCEEEEeccccCCH---------------HHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCc
Confidence 12456899999998876 34456666665321 1 1245777777653 235
Q ss_pred CHHHhccc-CeEEEeCCCCH--HHHHHHHHHHHHHHHH
Q 014376 328 DIAFVDRA-DIKAYVGPPTL--QARYEILRSCLQELIR 362 (426)
Q Consensus 328 d~al~~R~-~~~i~i~~p~~--~~r~~Il~~~l~~l~~ 362 (426)
...+..|+ ...+.+|+... ++...++++++++...
T Consensus 294 ~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~ 331 (469)
T PRK10923 294 REDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAAR 331 (469)
T ss_pred hHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHH
Confidence 67777887 45667776644 4566677888877654
No 302
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.24 E-value=2.6e-06 Score=78.18 Aligned_cols=30 Identities=33% Similarity=0.383 Sum_probs=26.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (426)
+.+..|+.+.|.||+|+|||||++.|++..
T Consensus 28 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 28 GYVKPGTLTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 566779999999999999999999999864
No 303
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.24 E-value=1.6e-05 Score=73.02 Aligned_cols=31 Identities=26% Similarity=0.384 Sum_probs=27.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 21 ITFLPSAITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5566799999999999999999999999874
No 304
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.24 E-value=1.9e-06 Score=81.26 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=28.2
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 26 LSVPKGEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5677799999999999999999999999874
No 305
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.23 E-value=1.8e-06 Score=84.03 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=28.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (279)
T PRK13650 28 FHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE 58 (279)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5677799999999999999999999999873
No 306
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.23 E-value=6.5e-06 Score=79.74 Aligned_cols=143 Identities=22% Similarity=0.320 Sum_probs=78.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHH---------h
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVE---------E 264 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~---------~ 264 (426)
++.+||+||+|||||++++..-+.+... ..-...++.+.. .+...+..+.+. .++ .
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~------~~~~~~~~~s~~------Tts~~~q~~ie~---~l~k~~~~~~gP~ 97 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSD------KYLVITINFSAQ------TTSNQLQKIIES---KLEKRRGRVYGPP 97 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTC------CEEEEEEES-TT------HHHHHHHHCCCT---TECECTTEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCcc------ccceeEeeccCC------CCHHHHHHHHhh---cEEcCCCCCCCCC
Confidence 5779999999999999999877655311 001223333221 111222211111 011 1
Q ss_pred ccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhh---hc--------CCCcEEEEEEeCCCC---cCCHH
Q 014376 265 ENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK---LK--------SSPNVIILTTSNITA---AIDIA 330 (426)
Q Consensus 265 ~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~---l~--------~~~~viVi~TtN~~~---~ld~a 330 (426)
.....|+||||+..-.... ..+.... ++|+++-. .. .-.++.++++.+... .+++.
T Consensus 98 ~~k~lv~fiDDlN~p~~d~---------ygtq~~i-ElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R 167 (272)
T PF12775_consen 98 GGKKLVLFIDDLNMPQPDK---------YGTQPPI-ELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPR 167 (272)
T ss_dssp SSSEEEEEEETTT-S---T---------TS--HHH-HHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHH
T ss_pred CCcEEEEEecccCCCCCCC---------CCCcCHH-HHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChH
Confidence 2345799999987554332 1222332 44444321 11 114578888888643 26778
Q ss_pred HhcccCeEEEeCCCCHHHHHHHHHHHHHHHHH
Q 014376 331 FVDRADIKAYVGPPTLQARYEILRSCLQELIR 362 (426)
Q Consensus 331 l~~R~~~~i~i~~p~~~~r~~Il~~~l~~l~~ 362 (426)
|++.| .++.++.|+.+....|+...+.....
T Consensus 168 ~~r~f-~i~~~~~p~~~sl~~If~~il~~~l~ 198 (272)
T PF12775_consen 168 FLRHF-NILNIPYPSDESLNTIFSSILQSHLK 198 (272)
T ss_dssp HHTTE-EEEE----TCCHHHHHHHHHHHHHTC
T ss_pred Hhhhe-EEEEecCCChHHHHHHHHHHHhhhcc
Confidence 88888 68899999999999999998887654
No 307
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.23 E-value=2.9e-06 Score=79.15 Aligned_cols=31 Identities=26% Similarity=0.428 Sum_probs=28.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 25 ~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 25 LSIEKGEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred EEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 5667799999999999999999999999874
No 308
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.23 E-value=9.1e-06 Score=75.56 Aligned_cols=31 Identities=32% Similarity=0.509 Sum_probs=27.8
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||++.|++.+.
T Consensus 22 l~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 22 ISISAGEFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5567799999999999999999999999873
No 309
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.23 E-value=1.2e-05 Score=74.46 Aligned_cols=120 Identities=21% Similarity=0.329 Sum_probs=64.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccch-------------------HHHHHH
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSES-------------------GKLVAK 253 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~-------------------~~~v~~ 253 (426)
.|..++|+||||+|||++|..++..... .+...++++...+....+.+. ......
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~------~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 84 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAAR------QGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGV 84 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh------CCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHH
Confidence 4899999999999999999998876632 133456676654110000000 001112
Q ss_pred HHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCC
Q 014376 254 LFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNI 323 (426)
Q Consensus 254 ~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~ 323 (426)
.+..+...+.. ..+.+++||-+..+..... .++.....+.+..++..|.++....++.++.|...
T Consensus 85 ~~~~l~~~~~~-~~~~lvVIDSis~l~~~~~----~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~ 149 (209)
T TIGR02237 85 AIQKTSKFIDR-DSASLVVVDSFTALYRLEL----SDDRISRNRELARQLTLLLSLARKKNLAVVITNQV 149 (209)
T ss_pred HHHHHHHHHhh-cCccEEEEeCcHHHhHHHh----CCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEccc
Confidence 23333333322 3678999999998864211 11111122233444455555544556666666443
No 310
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.23 E-value=1.7e-06 Score=84.20 Aligned_cols=31 Identities=35% Similarity=0.416 Sum_probs=28.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 28 l~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~ 58 (279)
T PRK13635 28 FSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL 58 (279)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 5677799999999999999999999999874
No 311
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.22 E-value=1.1e-05 Score=74.44 Aligned_cols=31 Identities=35% Similarity=0.528 Sum_probs=28.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++...
T Consensus 22 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 22 FHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5677799999999999999999999999873
No 312
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.22 E-value=2.2e-06 Score=83.22 Aligned_cols=31 Identities=26% Similarity=0.319 Sum_probs=28.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (274)
T PRK13647 26 LSIPEGSKTALLGPNGAGKSTLLLHLNGIYL 56 (274)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 5677799999999999999999999999873
No 313
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.22 E-value=8e-06 Score=76.21 Aligned_cols=31 Identities=39% Similarity=0.504 Sum_probs=27.7
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (218)
T cd03266 26 FTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE 56 (218)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4566789999999999999999999999873
No 314
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.21 E-value=8.6e-06 Score=75.78 Aligned_cols=31 Identities=35% Similarity=0.590 Sum_probs=27.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 23 ~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 23 LHIRKGEFLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5667799999999999999999999999873
No 315
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.21 E-value=1e-05 Score=76.14 Aligned_cols=31 Identities=32% Similarity=0.408 Sum_probs=28.2
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||++++++.+.
T Consensus 43 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 73 (224)
T cd03220 43 FEVPRGERIGLIGRNGAGKSTLLRLLAGIYP 73 (224)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5677899999999999999999999999763
No 316
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.21 E-value=1.4e-05 Score=74.67 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQ 216 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~ 216 (426)
+.++|+||+|+||||++|.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999999984
No 317
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.21 E-value=9.2e-07 Score=88.93 Aligned_cols=31 Identities=29% Similarity=0.407 Sum_probs=27.8
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 19 l~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~ 49 (352)
T PRK11144 19 LTLPAQGITAIFGRSGAGKTSLINAISGLTR 49 (352)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4567789999999999999999999999874
No 318
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.21 E-value=2.5e-06 Score=79.86 Aligned_cols=31 Identities=39% Similarity=0.483 Sum_probs=27.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (222)
T cd03224 21 LTVPEGEIVALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred EEEcCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5667799999999999999999999999874
No 319
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.21 E-value=2.2e-06 Score=81.06 Aligned_cols=31 Identities=29% Similarity=0.524 Sum_probs=28.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (235)
T cd03261 21 LDVRRGEILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5677799999999999999999999999874
No 320
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.21 E-value=1.8e-06 Score=81.37 Aligned_cols=31 Identities=32% Similarity=0.409 Sum_probs=28.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (230)
T TIGR03410 21 LEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP 51 (230)
T ss_pred eEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5677799999999999999999999999874
No 321
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.21 E-value=4.2e-06 Score=80.76 Aligned_cols=148 Identities=24% Similarity=0.309 Sum_probs=89.8
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccc----hHHHHHHHHHHH------
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSE----SGKLVAKLFQKI------ 258 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e----~~~~v~~~f~~~------ 258 (426)
+.+..|++..|.|-+|||||||+|++.+.. .|..+-+.+++.++..-...+ ..+.+..+||++
T Consensus 49 l~v~~GeIfViMGLSGSGKSTLvR~~NrLi-------ept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhr 121 (386)
T COG4175 49 LDVEEGEIFVIMGLSGSGKSTLVRLLNRLI-------EPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHR 121 (386)
T ss_pred eeecCCeEEEEEecCCCCHHHHHHHHhccC-------CCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccch
Confidence 677889999999999999999999998887 455666777776654211111 122344445531
Q ss_pred ------------------------HHHHH----------------------------hccCcEEEEEechhhHHHHhhhh
Q 014376 259 ------------------------QEMVE----------------------------EENNLVFVLIDEVESLAAARKAA 286 (426)
Q Consensus 259 ------------------------~~~~~----------------------------~~~~~~illIDEid~l~~~r~~~ 286 (426)
.+.++ -...|.|+++||.-+...
T Consensus 122 tVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALD----- 196 (386)
T COG4175 122 TVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALD----- 196 (386)
T ss_pred hHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcC-----
Confidence 00000 134677899998544322
Q ss_pred ccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHh--cc-----cCeEEEeCCCCHHH---HHHHHHHH
Q 014376 287 LSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFV--DR-----ADIKAYVGPPTLQA---RYEILRSC 356 (426)
Q Consensus 287 ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~--~R-----~~~~i~i~~p~~~~---r~~Il~~~ 356 (426)
|--..+.+.+|+..-.+ -.++||+.||. +|+|++ +| -+.++.++.|.+-- .-+..+.+
T Consensus 197 -----PLIR~~mQdeLl~Lq~~---l~KTIvFitHD----LdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~~F 264 (386)
T COG4175 197 -----PLIRTEMQDELLELQAK---LKKTIVFITHD----LDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDYVRDF 264 (386)
T ss_pred -----hHHHHHHHHHHHHHHHH---hCCeEEEEecC----HHHHHhccceEEEecCCeEEEeCCHHHHHcCccHHHHHHH
Confidence 22223566666665444 35689999986 566666 44 36778888885422 12344444
Q ss_pred HHHH
Q 014376 357 LQEL 360 (426)
Q Consensus 357 l~~l 360 (426)
.+..
T Consensus 265 v~~v 268 (386)
T COG4175 265 VRNV 268 (386)
T ss_pred HhcC
Confidence 4443
No 322
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.21 E-value=1.6e-05 Score=73.42 Aligned_cols=31 Identities=16% Similarity=0.337 Sum_probs=28.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||++.|++.+.
T Consensus 19 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 19 LTIEKGKMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5677799999999999999999999999874
No 323
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.21 E-value=2.2e-06 Score=82.11 Aligned_cols=31 Identities=35% Similarity=0.581 Sum_probs=27.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (255)
T PRK11231 23 LSLPTGKITALIGPNGCGKSTLLKCFARLLT 53 (255)
T ss_pred eEEcCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 5667799999999999999999999999864
No 324
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.20 E-value=8.8e-06 Score=75.68 Aligned_cols=31 Identities=32% Similarity=0.446 Sum_probs=28.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03259 21 LTVEPGEFLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5677799999999999999999999999873
No 325
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=98.20 E-value=6.5e-05 Score=74.28 Aligned_cols=90 Identities=17% Similarity=0.313 Sum_probs=60.3
Q ss_pred HHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCC------------
Q 014376 258 IQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITA------------ 325 (426)
Q Consensus 258 ~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~------------ 325 (426)
+...+.....+.|++|||+|++.+. .+..++..+..+-..+++++|...+...
T Consensus 163 ~~~~l~~~~~~iViiIDdLDR~~~~---------------~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~ 227 (325)
T PF07693_consen 163 IKKKLKESKKRIVIIIDDLDRCSPE---------------EIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEG 227 (325)
T ss_pred HHHhhhcCCceEEEEEcchhcCCcH---------------HHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcc
Confidence 3333334566789999999998652 3455566666666668888887766431
Q ss_pred ---cCCHHHhcc-cCeEEEeCCCCHHHHHHHHHHHHHHHHH
Q 014376 326 ---AIDIAFVDR-ADIKAYVGPPTLQARYEILRSCLQELIR 362 (426)
Q Consensus 326 ---~ld~al~~R-~~~~i~i~~p~~~~r~~Il~~~l~~l~~ 362 (426)
.....++.+ ++..+.+|+|+..+...++...+.+...
T Consensus 228 ~~~~~~~~yLeKiiq~~~~lP~~~~~~~~~~~~~~~~~~~~ 268 (325)
T PF07693_consen 228 FDEIDGREYLEKIIQVPFSLPPPSPSDLERYLNELLESLES 268 (325)
T ss_pred cccccHHHHHHhhcCeEEEeCCCCHHHHHHHHHHHHHHhhh
Confidence 112344544 5778899999999988888888766554
No 326
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.20 E-value=1.7e-05 Score=73.75 Aligned_cols=31 Identities=26% Similarity=0.515 Sum_probs=27.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 21 ~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 21 LTVKKGEVVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4567799999999999999999999999874
No 327
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.20 E-value=3e-06 Score=79.19 Aligned_cols=31 Identities=35% Similarity=0.362 Sum_probs=27.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 23 LNVYKGEIFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5567799999999999999999999999874
No 328
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.20 E-value=3.4e-05 Score=80.32 Aligned_cols=140 Identities=18% Similarity=0.254 Sum_probs=87.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHH-----------HHHH
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQ-----------EMVE 263 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~-----------~~~~ 263 (426)
..+++.|.+||||+++++++..... .....++.++|..+...++ -..+|...+ ..+
T Consensus 158 ~~vli~Ge~GtGK~~~A~~ih~~~~------~~~~~~~~~~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~- 224 (463)
T TIGR01818 158 ITVLINGESGTGKELVARALHRHSP------RANGPFIALNMAAIPKDLI------ESELFGHEKGAFTGANTRRQGRF- 224 (463)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC------CCCCCeEEEeCCCCCHHHH------HHHhcCCCCCCCCCcccCCCCcE-
Confidence 4599999999999999999988653 2356779999987633211 111121100 001
Q ss_pred hccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc--C-------CCcEEEEEEeCCC-------CcC
Q 014376 264 EENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK--S-------SPNVIILTTSNIT-------AAI 327 (426)
Q Consensus 264 ~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~--~-------~~~viVi~TtN~~-------~~l 327 (426)
.....+.|+|||++.+... .+..|+..++.-. . ..++.||+|++.. ..+
T Consensus 225 ~~a~~gtl~l~ei~~l~~~---------------~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f 289 (463)
T TIGR01818 225 EQADGGTLFLDEIGDMPLD---------------AQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKF 289 (463)
T ss_pred EECCCCeEEEEchhhCCHH---------------HHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCc
Confidence 1134578999999988663 3455666554311 0 1245677777654 235
Q ss_pred CHHHhcccC-eEEEeCCCC--HHHHHHHHHHHHHHHHH
Q 014376 328 DIAFVDRAD-IKAYVGPPT--LQARYEILRSCLQELIR 362 (426)
Q Consensus 328 d~al~~R~~-~~i~i~~p~--~~~r~~Il~~~l~~l~~ 362 (426)
.+.+..|+. ..+++|+.. .++...++++++.+...
T Consensus 290 ~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~ 327 (463)
T TIGR01818 290 REDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAAR 327 (463)
T ss_pred HHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHH
Confidence 567777764 477888876 56777888888877654
No 329
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.20 E-value=1.1e-05 Score=74.37 Aligned_cols=31 Identities=32% Similarity=0.516 Sum_probs=28.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||++.|++.+.
T Consensus 21 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (201)
T cd03231 21 FTLAAGEALQVTGPNGSGKTTLLRILAGLSP 51 (201)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5677799999999999999999999999873
No 330
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.20 E-value=3.8e-06 Score=78.08 Aligned_cols=45 Identities=22% Similarity=0.429 Sum_probs=35.7
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLF 240 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~ 240 (426)
+.|..|..|.|.||+|+|||||.|+|++... +..+.+.+++.+..
T Consensus 25 l~I~~GE~VaiIG~SGaGKSTLLR~lngl~d-------~t~G~i~~~g~~i~ 69 (258)
T COG3638 25 LEINQGEMVAIIGPSGAGKSTLLRSLNGLVD-------PTSGEILFNGVQIT 69 (258)
T ss_pred EEeCCCcEEEEECCCCCcHHHHHHHHhcccC-------CCcceEEecccchh
Confidence 5677899999999999999999999999664 34455777775543
No 331
>PRK10908 cell division protein FtsE; Provisional
Probab=98.20 E-value=3.3e-06 Score=79.14 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=27.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (222)
T PRK10908 23 FHMRPGEMAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5667799999999999999999999999873
No 332
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.19 E-value=2.2e-05 Score=90.60 Aligned_cols=30 Identities=40% Similarity=0.603 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccc
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (426)
.++.+.|+|++|+||||||+++++.+...|
T Consensus 206 ~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F 235 (1153)
T PLN03210 206 EVRMVGIWGSSGIGKTTIARALFSRLSRQF 235 (1153)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHHhhcC
Confidence 368899999999999999999999886554
No 333
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.19 E-value=1.2e-05 Score=75.16 Aligned_cols=31 Identities=32% Similarity=0.455 Sum_probs=28.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 25 ~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (220)
T cd03293 25 LSVEEGEFVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5677799999999999999999999999873
No 334
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.19 E-value=1.4e-05 Score=75.02 Aligned_cols=31 Identities=35% Similarity=0.503 Sum_probs=27.8
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||++.|++.+.
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (223)
T TIGR03740 21 LTVPKNSVYGLLGPNGAGKSTLLKMITGILR 51 (223)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5567799999999999999999999999873
No 335
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.19 E-value=1.1e-05 Score=74.10 Aligned_cols=30 Identities=30% Similarity=0.423 Sum_probs=27.4
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (426)
+.+..|..+.|.||+|+|||||+++|++.+
T Consensus 30 ~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 30 GKAKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456779999999999999999999999987
No 336
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.19 E-value=2.4e-05 Score=73.95 Aligned_cols=130 Identities=23% Similarity=0.262 Sum_probs=74.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEE
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLI 273 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illI 273 (426)
+.+-.++||+|||||.++|.+|+.+|... +.+||.+-++ ...+.++|.=+-. ..+.+.+
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~---------~vfnc~~~~~------~~~l~ril~G~~~------~GaW~cf 90 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFV---------VVFNCSEQMD------YQSLSRILKGLAQ------SGAWLCF 90 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--E---------EEEETTSSS-------HHHHHHHHHHHHH------HT-EEEE
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeE---------EEeccccccc------HHHHHHHHHHHhh------cCchhhh
Confidence 45678999999999999999999998765 8899877543 4455666554433 4578999
Q ss_pred echhhHHHHhhhhccCCCCChhHHHHHHHHHHhhh-----------hcCCCcEEEEEEeCCCC----cCCHHHhcccCeE
Q 014376 274 DEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK-----------LKSSPNVIILTTSNITA----AIDIAFVDRADIK 338 (426)
Q Consensus 274 DEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~-----------l~~~~~viVi~TtN~~~----~ld~al~~R~~~~ 338 (426)
||++.+....-+.++ ..+..+...+.. +.-.++.-++.|.|... .++..++.-| +.
T Consensus 91 defnrl~~~vLS~i~--------~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lF-Rp 161 (231)
T PF12774_consen 91 DEFNRLSEEVLSVIS--------QQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALF-RP 161 (231)
T ss_dssp ETCCCSSHHHHHHHH--------HHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTE-EE
T ss_pred hhhhhhhHHHHHHHH--------HHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHh-he
Confidence 999988653322111 011111111111 01123455666777543 4677777666 78
Q ss_pred EEeCCCCHHHHHHHH
Q 014376 339 AYVGPPTLQARYEIL 353 (426)
Q Consensus 339 i~i~~p~~~~r~~Il 353 (426)
+.+..||.....+++
T Consensus 162 vam~~PD~~~I~ei~ 176 (231)
T PF12774_consen 162 VAMMVPDLSLIAEIL 176 (231)
T ss_dssp EE--S--HHHHHHHH
T ss_pred eEEeCCCHHHHHHHH
Confidence 899999988777665
No 337
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.19 E-value=1.4e-05 Score=73.46 Aligned_cols=31 Identities=35% Similarity=0.550 Sum_probs=27.8
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||++.|++.+.
T Consensus 21 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (198)
T TIGR01189 21 FTLNAGEALQVTGPNGIGKTTLLRILAGLLR 51 (198)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5567799999999999999999999999873
No 338
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.19 E-value=2.3e-06 Score=82.67 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=27.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 30 l~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 60 (269)
T PRK13648 30 FNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK 60 (269)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5567799999999999999999999999873
No 339
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.19 E-value=6e-05 Score=66.20 Aligned_cols=27 Identities=37% Similarity=0.653 Sum_probs=24.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
..++++|+||+||||++.-++..+...
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 469999999999999999999988544
No 340
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.19 E-value=7.2e-06 Score=76.07 Aligned_cols=47 Identities=28% Similarity=0.403 Sum_probs=36.2
Q ss_pred CCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccc
Q 014376 185 GVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (426)
Q Consensus 185 g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (426)
|++ +.+..|..+.|.||+|+||||++++|++.... ..+.+.+.+.++
T Consensus 21 gvs-l~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~-------~~G~I~~~G~di 67 (237)
T COG0410 21 GVS-LEVERGEIVALLGRNGAGKTTLLKTIMGLVRP-------RSGRIIFDGEDI 67 (237)
T ss_pred eee-eEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-------CCeeEEECCeec
Confidence 444 56788999999999999999999999998853 234455555554
No 341
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.18 E-value=1.2e-05 Score=75.34 Aligned_cols=31 Identities=42% Similarity=0.538 Sum_probs=27.7
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 51 (220)
T cd03265 21 FRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK 51 (220)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5566789999999999999999999999863
No 342
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.18 E-value=1.2e-05 Score=75.81 Aligned_cols=31 Identities=32% Similarity=0.407 Sum_probs=27.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (232)
T cd03218 21 LSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK 51 (232)
T ss_pred eEecCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5667799999999999999999999999874
No 343
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.18 E-value=2.9e-06 Score=81.55 Aligned_cols=31 Identities=35% Similarity=0.610 Sum_probs=28.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 53 (258)
T PRK13548 23 LTLRPGEVVAILGPNGAGKSTLLRALSGELS 53 (258)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5667799999999999999999999999874
No 344
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.18 E-value=3.3e-06 Score=78.44 Aligned_cols=30 Identities=33% Similarity=0.447 Sum_probs=26.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..| .+.|.||+|+|||||+++|++.+.
T Consensus 21 ~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 21 LTLGPG-MYGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred EEEcCC-cEEEECCCCCCHHHHHHHHhCCCC
Confidence 455667 899999999999999999999873
No 345
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.17 E-value=1.2e-05 Score=74.81 Aligned_cols=31 Identities=29% Similarity=0.424 Sum_probs=28.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||++.|++.+.
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 21 LDIADGEFVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5677799999999999999999999999874
No 346
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.17 E-value=4.9e-06 Score=84.18 Aligned_cols=31 Identities=26% Similarity=0.446 Sum_probs=27.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~ 54 (369)
T PRK11000 24 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLED 54 (369)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 5567789999999999999999999999874
No 347
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.17 E-value=1.3e-05 Score=77.35 Aligned_cols=31 Identities=26% Similarity=0.371 Sum_probs=28.4
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 45 ~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~ 75 (264)
T PRK13546 45 LKAYEGDVIGLVGINGSGKSTLSNIIGGSLS 75 (264)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 5677899999999999999999999999874
No 348
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.17 E-value=1.1e-05 Score=79.45 Aligned_cols=31 Identities=29% Similarity=0.536 Sum_probs=28.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 25 l~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~ 55 (303)
T TIGR01288 25 FTIARGECFGLLGPNGAGKSTIARMLLGMIS 55 (303)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5677799999999999999999999999873
No 349
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.17 E-value=3.4e-06 Score=81.39 Aligned_cols=31 Identities=23% Similarity=0.472 Sum_probs=28.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 58 (265)
T PRK10253 28 VEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT 58 (265)
T ss_pred eEECCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 5667799999999999999999999999874
No 350
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.17 E-value=1.7e-06 Score=84.61 Aligned_cols=31 Identities=29% Similarity=0.365 Sum_probs=28.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||++.|++.+.
T Consensus 27 l~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~ 57 (288)
T PRK13643 27 LEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ 57 (288)
T ss_pred EEEcCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 5677799999999999999999999999874
No 351
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.17 E-value=5.5e-06 Score=83.27 Aligned_cols=31 Identities=32% Similarity=0.505 Sum_probs=27.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 23 l~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~ 53 (353)
T PRK10851 23 LDIPSGQMVALLGPSGSGKTTLLRIIAGLEH 53 (353)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4567799999999999999999999999874
No 352
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.17 E-value=1.4e-05 Score=74.28 Aligned_cols=31 Identities=35% Similarity=0.537 Sum_probs=27.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||++.|++.+.
T Consensus 20 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 50 (213)
T cd03235 20 FEVKPGEFLAIVGPNGAGKSTLLKAILGLLK 50 (213)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 5667799999999999999999999999874
No 353
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.17 E-value=1.7e-05 Score=73.51 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=23.8
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 191 VSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (426)
...++.++|.||+|+||||+++.++...
T Consensus 26 ~~~~~~~~l~G~n~~GKstll~~i~~~~ 53 (204)
T cd03282 26 RGSSRFHIITGPNMSGKSTYLKQIALLA 53 (204)
T ss_pred eCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3446889999999999999999998654
No 354
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.17 E-value=1.3e-05 Score=75.93 Aligned_cols=31 Identities=35% Similarity=0.521 Sum_probs=27.8
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++...
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (236)
T TIGR03864 22 FTVRPGEFVALLGPNGAGKSTLFSLLTRLYV 52 (236)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4567799999999999999999999998873
No 355
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.17 E-value=4.2e-05 Score=79.40 Aligned_cols=140 Identities=20% Similarity=0.279 Sum_probs=82.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHH-----------HHHH
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQ-----------EMVE 263 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~-----------~~~~ 263 (426)
..++++|++||||+++++++..... .....++.++|..+...+ .-..+|.... ..+
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~------~~~~~~~~i~c~~~~~~~------~~~~lfg~~~~~~~~~~~~~~g~~- 233 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSR------RAKGPFIKVNCAALPESL------LESELFGHEKGAFTGAQTLRQGLF- 233 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCC------CCCCCeEEEECCCCCHHH------HHHHhcCCCCCCCCCCCCCCCCce-
Confidence 4599999999999999999977542 235677999998763221 1111222100 001
Q ss_pred hccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc--C-------CCcEEEEEEeCCC-------CcC
Q 014376 264 EENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK--S-------SPNVIILTTSNIT-------AAI 327 (426)
Q Consensus 264 ~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~--~-------~~~viVi~TtN~~-------~~l 327 (426)
.....++|+|||++.+.. ..+..|+..++.-. . ..++.||+|||.. ..+
T Consensus 234 ~~a~~gtl~ld~i~~l~~---------------~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~ 298 (457)
T PRK11361 234 ERANEGTLLLDEIGEMPL---------------VLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTF 298 (457)
T ss_pred EECCCCEEEEechhhCCH---------------HHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCc
Confidence 113457899999999876 34556666665311 0 1246788888754 235
Q ss_pred CHHHhcccC-eEEEeCCCCH--HHHHHHHHHHHHHHHH
Q 014376 328 DIAFVDRAD-IKAYVGPPTL--QARYEILRSCLQELIR 362 (426)
Q Consensus 328 d~al~~R~~-~~i~i~~p~~--~~r~~Il~~~l~~l~~ 362 (426)
.+.+..|+. ..+.+|+... ++...++..++.+...
T Consensus 299 ~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~ 336 (457)
T PRK11361 299 REDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSS 336 (457)
T ss_pred hHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHH
Confidence 566666763 3344444332 2334466667766544
No 356
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.17 E-value=1.4e-05 Score=74.47 Aligned_cols=31 Identities=39% Similarity=0.566 Sum_probs=27.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 32 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 62 (214)
T PRK13543 32 FHVDAGEALLVQGDNGAGKTTLLRVLAGLLH 62 (214)
T ss_pred EEECCCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 5567799999999999999999999999874
No 357
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.17 E-value=5.3e-06 Score=84.08 Aligned_cols=31 Identities=29% Similarity=0.371 Sum_probs=27.8
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|||||||+++||+...
T Consensus 40 l~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~ 70 (377)
T PRK11607 40 LTIYKGEIFALLGASGCGKSTLLRMLAGFEQ 70 (377)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4566789999999999999999999999874
No 358
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.16 E-value=7.4e-06 Score=75.91 Aligned_cols=31 Identities=32% Similarity=0.389 Sum_probs=27.7
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 29 l~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (207)
T cd03369 29 FKVKAGEKIGIVGRTGAGKSTLILALFRFLE 59 (207)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 5566799999999999999999999999863
No 359
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.16 E-value=5.9e-06 Score=78.17 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=28.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (237)
T cd03252 23 LRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV 53 (237)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 5567799999999999999999999999873
No 360
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=98.16 E-value=3e-05 Score=73.13 Aligned_cols=128 Identities=20% Similarity=0.350 Sum_probs=71.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccc-ccc----------------------chHH
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSK-WFS----------------------ESGK 249 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~-~~~----------------------e~~~ 249 (426)
.|..+.|+||||+|||++|..++.....+-.-...+.+.++++...-+.. .+. ....
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAYNSD 97 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecCCHH
Confidence 38999999999999999999998664321100001356677776552210 000 0011
Q ss_pred HHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCC-CChhHHHHHHHHHHhhhhcCCCcEEEEEEeCC
Q 014376 250 LVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSE-PSDSIRVVNALLTQMDKLKSSPNVIILTTSNI 323 (426)
Q Consensus 250 ~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e-~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~ 323 (426)
.+..++..+...+.....+.+++||-+..+.... ..+.. .....+.+..++..|..+....++.|+.|+..
T Consensus 98 ~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~---~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~~ 169 (235)
T cd01123 98 HQLQLLEELEAILIESSRIKLVIVDSVTALFRAE---FDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITNQV 169 (235)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHH---hcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccE
Confidence 2233344444444443378899999998875421 11111 12233455666667766655556666666443
No 361
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.16 E-value=9e-06 Score=76.08 Aligned_cols=31 Identities=29% Similarity=0.387 Sum_probs=27.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.++.|.+..|+||+|+|||||++.++++..
T Consensus 52 W~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ 82 (257)
T COG1119 52 WQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP 82 (257)
T ss_pred eeecCCCcEEEECCCCCCHHHHHHHHhcccC
Confidence 3455589999999999999999999999873
No 362
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.16 E-value=3.8e-06 Score=79.66 Aligned_cols=31 Identities=23% Similarity=0.539 Sum_probs=27.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 22 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (240)
T PRK09493 22 LNIDQGEVVVIIGPSGSGKSTLLRCINKLEE 52 (240)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5567799999999999999999999999873
No 363
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.16 E-value=1.8e-05 Score=75.50 Aligned_cols=33 Identities=33% Similarity=0.418 Sum_probs=28.4
Q ss_pred CCccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 187 NPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 187 ~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
.+..+..|..+.|.||+|+|||||+++|++.+.
T Consensus 18 ~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~ 50 (246)
T cd03237 18 EGGSISESEVIGILGPNGIGKTTFIKMLAGVLK 50 (246)
T ss_pred ecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 334566789999999999999999999999874
No 364
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.16 E-value=1.7e-05 Score=73.32 Aligned_cols=31 Identities=39% Similarity=0.546 Sum_probs=28.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||++.|++.+.
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 28 GVVKPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred EEECCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 5567799999999999999999999999874
No 365
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.15 E-value=4.6e-06 Score=78.43 Aligned_cols=31 Identities=35% Similarity=0.594 Sum_probs=27.8
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++...
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (225)
T PRK10247 28 FSLRAGEFKLITGPSGCGKSTLLKIVASLIS 58 (225)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 5667799999999999999999999999763
No 366
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.14 E-value=3.5e-06 Score=80.13 Aligned_cols=31 Identities=26% Similarity=0.444 Sum_probs=27.7
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 24 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (241)
T PRK14250 24 VKFEGGAIYTIVGPSGAGKSTLIKLINRLID 54 (241)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5566789999999999999999999999873
No 367
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.14 E-value=5.6e-06 Score=88.77 Aligned_cols=42 Identities=21% Similarity=0.374 Sum_probs=33.4
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (426)
+.++.|..+.|.||+|+|||||++.|++.+. |..+.+.+++.
T Consensus 364 l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~-------p~~G~I~i~g~ 405 (582)
T PRK11176 364 FKIPAGKTVALVGRSGSGKSTIANLLTRFYD-------IDEGEILLDGH 405 (582)
T ss_pred EEeCCCCEEEEECCCCCCHHHHHHHHHhccC-------CCCceEEECCE
Confidence 4567799999999999999999999999884 34444555553
No 368
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1.8e-05 Score=73.40 Aligned_cols=50 Identities=20% Similarity=0.351 Sum_probs=36.9
Q ss_pred CCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccc
Q 014376 185 GVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLF 240 (426)
Q Consensus 185 g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~ 240 (426)
|++ +.+..|....|.||+|+|||||+.+|++.-+.. ...+-+.+++.++.
T Consensus 22 gvn-L~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~-----Vt~G~I~~~GedI~ 71 (251)
T COG0396 22 GVN-LTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYE-----VTEGEILFDGEDIL 71 (251)
T ss_pred Ccc-eeEcCCcEEEEECCCCCCHHHHHHHHhCCCCce-----EecceEEECCcccc
Confidence 554 567789999999999999999999999865432 23344666665553
No 369
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.14 E-value=1.6e-05 Score=76.21 Aligned_cols=31 Identities=26% Similarity=0.498 Sum_probs=28.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (255)
T PRK11248 22 LTLESGELLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5677799999999999999999999999874
No 370
>PRK15115 response regulator GlrR; Provisional
Probab=98.13 E-value=4.8e-05 Score=78.77 Aligned_cols=140 Identities=19% Similarity=0.263 Sum_probs=81.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHH----------HHh
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEM----------VEE 264 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~----------~~~ 264 (426)
..++|+|++|||||++|+++.+... ..+..++.++|..+...+ .-..+|...+.. ...
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~------r~~~~f~~i~c~~~~~~~------~~~~lfg~~~~~~~~~~~~~~g~~~ 225 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASP------RASKPFIAINCGALPEQL------LESELFGHARGAFTGAVSNREGLFQ 225 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcC------CCCCCeEEEeCCCCCHHH------HHHHhcCCCcCCCCCCccCCCCcEE
Confidence 4599999999999999999988753 234567999998763211 111223211110 001
Q ss_pred ccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc--C-------CCcEEEEEEeCCCC-------cCC
Q 014376 265 ENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK--S-------SPNVIILTTSNITA-------AID 328 (426)
Q Consensus 265 ~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~--~-------~~~viVi~TtN~~~-------~ld 328 (426)
......|||||++.|... .+..|+..++.-. . ..++.+|+|++..- .+.
T Consensus 226 ~a~~gtl~l~~i~~l~~~---------------~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~ 290 (444)
T PRK15115 226 AAEGGTLFLDEIGDMPAP---------------LQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFR 290 (444)
T ss_pred ECCCCEEEEEccccCCHH---------------HHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCcc
Confidence 234578999999998763 3455666654311 0 12567888877531 233
Q ss_pred HHHhcccCeEEEeCCCCHHHH----HHHHHHHHHHHHH
Q 014376 329 IAFVDRADIKAYVGPPTLQAR----YEILRSCLQELIR 362 (426)
Q Consensus 329 ~al~~R~~~~i~i~~p~~~~r----~~Il~~~l~~l~~ 362 (426)
..+..|+. .+.+..|...+| ..++++++.++..
T Consensus 291 ~~l~~~l~-~~~i~lPpLr~R~eDi~~l~~~~l~~~~~ 327 (444)
T PRK15115 291 EDLYYRLN-VVSLKIPALAERTEDIPLLANHLLRQAAE 327 (444)
T ss_pred HHHHHhhc-eeeecCCChHhccccHHHHHHHHHHHHHH
Confidence 44445542 234444555444 4456677766543
No 371
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.13 E-value=4.7e-06 Score=80.96 Aligned_cols=31 Identities=29% Similarity=0.565 Sum_probs=28.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 25 l~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~ 55 (277)
T PRK13652 25 FIAPRNSRIAVIGPNGAGKSTLFRHFNGILK 55 (277)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5677799999999999999999999999874
No 372
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.12 E-value=2e-05 Score=79.82 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQK 217 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~ 217 (426)
+.++++.||+|||||+++.+++..
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHH
Confidence 466999999999999999998887
No 373
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.12 E-value=1.7e-05 Score=78.01 Aligned_cols=31 Identities=35% Similarity=0.510 Sum_probs=27.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 23 ~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~ 53 (301)
T TIGR03522 23 FEAQKGRIVGFLGPNGAGKSTTMKIITGYLP 53 (301)
T ss_pred EEEeCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5667799999999999999999999999873
No 374
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.12 E-value=2.5e-05 Score=73.69 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=27.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 6 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 36 (230)
T TIGR01184 6 LTIQQGEFISLIGHSGCGKSTLLNLISGLAQ 36 (230)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4567799999999999999999999999874
No 375
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.11 E-value=4.1e-06 Score=81.64 Aligned_cols=31 Identities=26% Similarity=0.404 Sum_probs=28.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 28 l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~ 58 (282)
T PRK13640 28 FSIPRGSWTALIGHNGSGKSTISKLINGLLL 58 (282)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcccC
Confidence 5667799999999999999999999999874
No 376
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.11 E-value=3.8e-06 Score=81.32 Aligned_cols=31 Identities=29% Similarity=0.469 Sum_probs=27.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 30 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (271)
T PRK13632 30 FEINEGEYVAILGHNGSGKSTISKILTGLLK 60 (271)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5567799999999999999999999999874
No 377
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.11 E-value=3.3e-06 Score=84.15 Aligned_cols=171 Identities=20% Similarity=0.255 Sum_probs=86.8
Q ss_pred hhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccC---CCCcceE-EEEe
Q 014376 160 SLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSS---RYPQCQL-VEVN 235 (426)
Q Consensus 160 ~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~---~~~~~~~-i~i~ 235 (426)
++.|.+.+|..++-.+....... .-+...+..+-++||.|.||+|||.|++.+++......+. .....++ ..+.
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~--~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~ 102 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKN--DPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVS 102 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCC--CCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEEC
T ss_pred cCcCcHHHHHHHHHHHHhccccc--cccccccccccceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceec
Confidence 46777888877653322111000 0000113334579999999999999999887665332210 0011111 1121
Q ss_pred ccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhh----hcC
Q 014376 236 AHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK----LKS 311 (426)
Q Consensus 236 ~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~----l~~ 311 (426)
-....+.|.-+.+..+. ...+|++|||+|.+.. .....|++.|++ +..
T Consensus 103 ~d~~~~~~~leaGalvl-------------ad~GiccIDe~dk~~~---------------~~~~~l~eaMEqq~isi~k 154 (331)
T PF00493_consen 103 RDPVTGEWVLEAGALVL-------------ADGGICCIDEFDKMKE---------------DDRDALHEAMEQQTISIAK 154 (331)
T ss_dssp CCGGTSSECEEE-HHHH-------------CTTSEEEECTTTT--C---------------HHHHHHHHHHHCSCEEECT
T ss_pred cccccceeEEeCCchhc-------------ccCceeeecccccccc---------------hHHHHHHHHHHcCeeccch
Confidence 12223445545554332 3568999999998864 234556666663 111
Q ss_pred -------CCcEEEEEEeCCCC-------------cCCHHHhcccCeEEEe-CCCCHHHHHHHHHHHHHHH
Q 014376 312 -------SPNVIILTTSNITA-------------AIDIAFVDRADIKAYV-GPPTLQARYEILRSCLQEL 360 (426)
Q Consensus 312 -------~~~viVi~TtN~~~-------------~ld~al~~R~~~~i~i-~~p~~~~r~~Il~~~l~~l 360 (426)
+.+.-|++++|+.. .+++.+++|||.++.+ ..++.+.-..+.++.+...
T Consensus 155 agi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 155 AGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp SSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred hhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEecc
Confidence 24578899999775 2577889999988765 6677666666666666544
No 378
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.11 E-value=2.8e-05 Score=75.25 Aligned_cols=31 Identities=23% Similarity=0.445 Sum_probs=28.4
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 45 ~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~ 75 (269)
T cd03294 45 LDVREGEIFVIMGLSGSGKSTLLRCINRLIE 75 (269)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5677899999999999999999999999874
No 379
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.11 E-value=5.3e-06 Score=79.55 Aligned_cols=31 Identities=32% Similarity=0.453 Sum_probs=28.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 52 (256)
T TIGR03873 22 VTAPPGSLTGLLGPNGSGKSTLLRLLAGALR 52 (256)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 5667799999999999999999999999874
No 380
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.11 E-value=1.6e-05 Score=76.23 Aligned_cols=34 Identities=32% Similarity=0.315 Sum_probs=28.7
Q ss_pred CcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 325 AAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 325 ~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
.-++..|++|. .+|...+++.++..+||+..+.+
T Consensus 340 hGiP~D~lDR~-lII~t~py~~~d~~~IL~iRc~E 373 (454)
T KOG2680|consen 340 HGIPIDLLDRM-LIISTQPYTEEDIKKILRIRCQE 373 (454)
T ss_pred CCCcHHHhhhh-heeecccCcHHHHHHHHHhhhhh
Confidence 44788899998 77888889999999999987766
No 381
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.11 E-value=1.8e-05 Score=79.60 Aligned_cols=29 Identities=34% Similarity=0.449 Sum_probs=25.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 192 SWNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 192 ~~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
..+++++||||+|+|||+|+-.....+..
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCc
Confidence 34799999999999999999999888854
No 382
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.11 E-value=4e-06 Score=81.12 Aligned_cols=31 Identities=29% Similarity=0.351 Sum_probs=27.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (271)
T PRK13638 22 LDFSLSPVTGLVGANGCGKSTLFMNLSGLLR 52 (271)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 5667799999999999999999999999874
No 383
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.10 E-value=4.9e-06 Score=78.78 Aligned_cols=31 Identities=32% Similarity=0.438 Sum_probs=28.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 26 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 56 (237)
T PRK11614 26 LHINQGEIVTLIGANGAGKTTLLGTLCGDPR 56 (237)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 5677799999999999999999999999873
No 384
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.10 E-value=2.2e-06 Score=87.32 Aligned_cols=84 Identities=21% Similarity=0.296 Sum_probs=58.3
Q ss_pred cccccchhhhhhhchhhHHHHHHHHHHHHH--------------------HHhhcCCC-------CccccCCcEEEEEcC
Q 014376 150 PAKEFDGMWESLIYESGLKQRLLHYAASAL--------------------MFAEKGVN-------PFLVSWNRIVLLHGP 202 (426)
Q Consensus 150 p~~~~~~~~~~lv~~~~~k~~L~~~~~~~~--------------------~~~~~g~~-------~~~i~~~~~vLL~GP 202 (426)
|-...=+.|.+++.--..-++|.+++...- .+...|.. .|.+..|..+-+.||
T Consensus 291 Pid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGP 370 (580)
T COG4618 291 PIDLAIANWKQFVAARQSYKRLNELLAELPAAAERMPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGP 370 (580)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCCCCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECC
Confidence 555555678888887777777777664311 00001111 156778999999999
Q ss_pred CCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccc
Q 014376 203 PGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLF 240 (426)
Q Consensus 203 pGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~ 240 (426)
+|+|||||+|.+.+.+ .|..+.+.+++.++.
T Consensus 371 SgSGKSTLaR~lvG~w-------~p~~G~VRLDga~l~ 401 (580)
T COG4618 371 SGSGKSTLARLLVGIW-------PPTSGSVRLDGADLR 401 (580)
T ss_pred CCccHHHHHHHHHccc-------ccCCCcEEecchhhh
Confidence 9999999999999988 455666888887664
No 385
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.10 E-value=1.1e-05 Score=74.04 Aligned_cols=62 Identities=24% Similarity=0.410 Sum_probs=48.6
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHH
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQK 257 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~ 257 (426)
+.|..+..+.+.|.+|+|||||++++|+.+ .+.++.|.+++.++..+........+..+||.
T Consensus 27 L~I~~g~FvtViGsNGAGKSTlln~iaG~l-------~~t~G~I~Idg~dVtk~~~~~RA~~larVfQd 88 (263)
T COG1101 27 LEIAEGDFVTVIGSNGAGKSTLLNAIAGDL-------KPTSGQILIDGVDVTKKSVAKRANLLARVFQD 88 (263)
T ss_pred eeecCCceEEEEcCCCccHHHHHHHhhCcc-------ccCCceEEECceecccCCHHHHhhHHHHHhcc
Confidence 557778999999999999999999999998 45677799998887655444445556666663
No 386
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.10 E-value=4.4e-05 Score=72.13 Aligned_cols=31 Identities=26% Similarity=0.520 Sum_probs=27.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 22 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 52 (236)
T cd03253 22 FTIPAGKKVAIVGPSGSGKSTILRLLFRFYD 52 (236)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4567799999999999999999999999874
No 387
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.10 E-value=2.1e-05 Score=73.01 Aligned_cols=31 Identities=26% Similarity=0.440 Sum_probs=28.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 19 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~ 49 (211)
T cd03298 19 LTFAQGEITAIVGPSGSGKSTLLNLIAGFET 49 (211)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5667799999999999999999999999874
No 388
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.10 E-value=2.3e-05 Score=75.33 Aligned_cols=31 Identities=26% Similarity=0.387 Sum_probs=27.8
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||++.|++.+.
T Consensus 33 l~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~ 63 (257)
T PRK11247 33 LHIPAGQFVAVVGRSGCGKSTLLRLLAGLET 63 (257)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4566789999999999999999999999874
No 389
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.10 E-value=2.4e-05 Score=75.90 Aligned_cols=31 Identities=23% Similarity=0.377 Sum_probs=28.2
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (274)
T PRK13644 23 LVIKKGEYIGIIGKNGSGKSTLALHLNGLLR 53 (274)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5677899999999999999999999999874
No 390
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.09 E-value=1.1e-05 Score=84.60 Aligned_cols=31 Identities=29% Similarity=0.446 Sum_probs=28.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 24 l~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~ 54 (490)
T PRK10938 24 LTLNAGDSWAFVGANGSGKSALARALAGELP 54 (490)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 5667799999999999999999999999874
No 391
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.09 E-value=3.1e-05 Score=70.20 Aligned_cols=31 Identities=29% Similarity=0.550 Sum_probs=27.7
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.|..|..+.+.||+|||||||.+.+|+...
T Consensus 26 L~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~ 56 (259)
T COG4525 26 LTIASGELVVVLGPSGCGKTTLLNLIAGFVT 56 (259)
T ss_pred eeecCCCEEEEEcCCCccHHHHHHHHhcCcC
Confidence 4567789999999999999999999999874
No 392
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.09 E-value=5e-05 Score=70.98 Aligned_cols=31 Identities=32% Similarity=0.376 Sum_probs=27.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++...
T Consensus 25 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 55 (221)
T cd03244 25 FSIKPGEKVGIVGRTGSGKSSLLLALFRLVE 55 (221)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 5677799999999999999999999999863
No 393
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.09 E-value=2e-05 Score=75.51 Aligned_cols=31 Identities=26% Similarity=0.499 Sum_probs=28.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 25 ~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~ 55 (251)
T PRK09544 25 LELKPGKILTLLGPNGAGKSTLVRVVLGLVA 55 (251)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5677799999999999999999999999874
No 394
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.09 E-value=3.2e-05 Score=72.63 Aligned_cols=30 Identities=30% Similarity=0.464 Sum_probs=26.9
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 190 LVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 31 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGLIP 31 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456689999999999999999999999874
No 395
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.09 E-value=2.4e-05 Score=76.15 Aligned_cols=170 Identities=19% Similarity=0.244 Sum_probs=91.9
Q ss_pred hhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccc
Q 014376 160 SLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (426)
Q Consensus 160 ~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (426)
.+.|..+-.+.+.++++......+ ...+++.||.|+|||++....... ...+ ..+.-++.+|+.-.
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gE----------snsviiigprgsgkT~li~~~Ls~-~q~~---~E~~l~v~Lng~~~ 90 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGE----------SNSVIIIGPRGSGKTILIDTRLSD-IQEN---GENFLLVRLNGELQ 90 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcC----------CCceEEEccCCCCceEeeHHHHhh-HHhc---CCeEEEEEECccch
Confidence 356667777778888877665544 245999999999999987665444 1111 12333455555332
Q ss_pred ccc-------------------cccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHH
Q 014376 240 FSK-------------------WFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVN 300 (426)
Q Consensus 240 ~~~-------------------~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~ 300 (426)
..+ .++.....+.++....+.-.+..+.++|.++||+|.+.+.. .+.
T Consensus 91 ~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~--------------rQt 156 (408)
T KOG2228|consen 91 TDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS--------------RQT 156 (408)
T ss_pred hhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch--------------hhH
Confidence 211 01111111122222111111123445777788999887632 123
Q ss_pred HHHHHhhhhcC-CCcEEEEEEeCCCCc---CCHHHhcccCeE-EEeCCC-CHHHHHHHHHHHH
Q 014376 301 ALLTQMDKLKS-SPNVIILTTSNITAA---IDIAFVDRADIK-AYVGPP-TLQARYEILRSCL 357 (426)
Q Consensus 301 ~ll~~ld~l~~-~~~viVi~TtN~~~~---ld~al~~R~~~~-i~i~~p-~~~~r~~Il~~~l 357 (426)
.+.+.+|--+. +..+.|++-|.+-+. +.....+||... |++.++ +..+...+++..+
T Consensus 157 llYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 157 LLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 34555554432 233444444444444 467788999654 666554 5566667777666
No 396
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.07 E-value=7.4e-06 Score=77.54 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=28.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 24 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 54 (238)
T cd03249 24 LTIPPGKTVALVGSSGCGKSTVVSLLERFYD 54 (238)
T ss_pred EEecCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 5667799999999999999999999999873
No 397
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.07 E-value=2.7e-05 Score=73.85 Aligned_cols=31 Identities=32% Similarity=0.498 Sum_probs=27.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (237)
T TIGR00968 21 LEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ 51 (237)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5677799999999999999999999999863
No 398
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.06 E-value=4e-05 Score=72.03 Aligned_cols=27 Identities=22% Similarity=0.269 Sum_probs=23.6
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHH
Q 014376 191 VSWNRIVLLHGPPGTGKTSLCKALAQK 217 (426)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~ 217 (426)
+..++.++|.||+|+|||++.+.++..
T Consensus 28 ~~~g~~~~itG~N~~GKStll~~i~~~ 54 (222)
T cd03287 28 AEGGYCQIITGPNMGGKSSYIRQVALI 54 (222)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 344688999999999999999999983
No 399
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.06 E-value=1.6e-05 Score=79.56 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=28.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+|+|++...
T Consensus 26 l~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~ 56 (343)
T TIGR02314 26 LHVPAGQIYGVIGASGAGKSTLIRCVNLLER 56 (343)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5677799999999999999999999999874
No 400
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.06 E-value=7.3e-06 Score=88.98 Aligned_cols=44 Identities=25% Similarity=0.308 Sum_probs=36.4
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (426)
+.|+.|+.+.|.|++|||||||+|.+.+.+ .|..+-+.+++.++
T Consensus 494 L~I~~Ge~vaIvG~SGsGKSTL~KLL~gly-------~p~~G~I~~dg~dl 537 (709)
T COG2274 494 LEIPPGEKVAIVGRSGSGKSTLLKLLLGLY-------KPQQGRILLDGVDL 537 (709)
T ss_pred EEeCCCCEEEEECCCCCCHHHHHHHHhcCC-------CCCCceEEECCEeH
Confidence 457779999999999999999999999988 45556677777654
No 401
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.05 E-value=9.2e-06 Score=78.93 Aligned_cols=31 Identities=19% Similarity=0.384 Sum_probs=28.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 28 l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 58 (277)
T PRK13642 28 FSITKGEWVSIIGQNGSGKSTTARLIDGLFE 58 (277)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4567799999999999999999999999884
No 402
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.05 E-value=9.5e-06 Score=79.23 Aligned_cols=31 Identities=19% Similarity=0.317 Sum_probs=27.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~ 58 (286)
T PRK13646 28 TEFEQGKYYAIVGQTGSGKSTLIQNINALLK 58 (286)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5667799999999999999999999999874
No 403
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.05 E-value=1.6e-05 Score=89.75 Aligned_cols=139 Identities=24% Similarity=0.350 Sum_probs=84.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccc------ccc-ccccchHHHHHHHHHHHHHHHHhcc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS------LFS-KWFSESGKLVAKLFQKIQEMVEEEN 266 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~------l~~-~~~~e~~~~v~~~f~~~~~~~~~~~ 266 (426)
++.++|-|.||.|||+|..++|++.|..+ +.||-++ +++ ..+++.+..++.+=.. ++....
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kl---------iRINLSeQTdL~DLfGsd~Pve~~Gef~w~dap---fL~amr 1610 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKL---------IRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAP---FLHAMR 1610 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCce---------EEeeccccchHHHHhCCCCCcccCceeEecccH---HHHHhh
Confidence 45699999999999999999999997654 7777543 222 2233322222111011 111123
Q ss_pred CcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHH--------Hhh-hhcCCCcEEEEEEeCCCCc------CCHHH
Q 014376 267 NLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLT--------QMD-KLKSSPNVIILTTSNITAA------IDIAF 331 (426)
Q Consensus 267 ~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~--------~ld-~l~~~~~viVi~TtN~~~~------ld~al 331 (426)
....+++||+.-..... ..-+|+.|. .+| .+.-++++.|+++.|+-+. ++..|
T Consensus 1611 ~G~WVlLDEiNLaSQSV------------lEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF 1678 (4600)
T COG5271 1611 DGGWVLLDEINLASQSV------------LEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSF 1678 (4600)
T ss_pred cCCEEEeehhhhhHHHH------------HHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHH
Confidence 56789999976432211 112222222 222 2345689999999997644 79999
Q ss_pred hcccCeEEEeCCCCHHHHHHHHHHHH
Q 014376 332 VDRADIKAYVGPPTLQARYEILRSCL 357 (426)
Q Consensus 332 ~~R~~~~i~i~~p~~~~r~~Il~~~l 357 (426)
+.|| -++++...+.+....|....+
T Consensus 1679 ~nRF-svV~~d~lt~dDi~~Ia~~~y 1703 (4600)
T COG5271 1679 LNRF-SVVKMDGLTTDDITHIANKMY 1703 (4600)
T ss_pred hhhh-heEEecccccchHHHHHHhhC
Confidence 9999 566677666666666655443
No 404
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.05 E-value=4.9e-05 Score=71.83 Aligned_cols=26 Identities=27% Similarity=0.556 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l 218 (426)
.|..++++|+||+|||+++..++...
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~ 49 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGA 49 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH
Confidence 38999999999999999999997653
No 405
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.04 E-value=6e-06 Score=83.10 Aligned_cols=31 Identities=26% Similarity=0.444 Sum_probs=27.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 18 l~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~ 48 (354)
T TIGR02142 18 FTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR 48 (354)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4567789999999999999999999999874
No 406
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.04 E-value=2.7e-05 Score=78.05 Aligned_cols=31 Identities=19% Similarity=0.317 Sum_probs=28.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 26 l~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~ 56 (343)
T PRK11153 26 LHIPAGEIFGVIGASGAGKSTLIRCINLLER 56 (343)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 5677799999999999999999999999873
No 407
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.04 E-value=2e-05 Score=83.22 Aligned_cols=31 Identities=29% Similarity=0.435 Sum_probs=27.7
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 32 l~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~ 62 (510)
T PRK15439 32 FTLHAGEVHALLGGNGAGKSTLMKIIAGIVP 62 (510)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4566789999999999999999999999873
No 408
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.04 E-value=4.5e-05 Score=71.57 Aligned_cols=39 Identities=28% Similarity=0.574 Sum_probs=30.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecc
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (426)
.|..++|+||||+|||++|..+|...... +..+++++..
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~------~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKN------GKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC------CCeEEEEECC
Confidence 38899999999999999999999866321 3445666665
No 409
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.04 E-value=6.2e-06 Score=81.83 Aligned_cols=31 Identities=23% Similarity=0.478 Sum_probs=28.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 47 l~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~ 77 (320)
T PRK13631 47 YTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK 77 (320)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5667799999999999999999999999874
No 410
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.04 E-value=9e-06 Score=80.16 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=28.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||++.|++.+.
T Consensus 28 l~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~ 58 (305)
T PRK13651 28 VEINQGEFIAIIGQTGSGKTTFIEHLNALLL 58 (305)
T ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 5677799999999999999999999999874
No 411
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.04 E-value=8.9e-06 Score=87.37 Aligned_cols=42 Identities=26% Similarity=0.474 Sum_probs=33.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (426)
+.+.+|..+.|.|++|+|||||++.+++.+. |..+.+.+++.
T Consensus 356 l~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~-------p~~G~I~i~g~ 397 (588)
T PRK13657 356 FEAKPGQTVAIVGPTGAGKSTLINLLQRVFD-------PQSGRILIDGT 397 (588)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCcC-------CCCCEEEECCE
Confidence 4567799999999999999999999999884 33444555543
No 412
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.03 E-value=4.9e-05 Score=76.65 Aligned_cols=90 Identities=24% Similarity=0.379 Sum_probs=54.4
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcce-EEEEecc---c-----------cccccccchHHH---
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQ-LVEVNAH---S-----------LFSKWFSESGKL--- 250 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~-~i~i~~~---~-----------l~~~~~~e~~~~--- 250 (426)
+.+..|..++|.||+|+|||||++.+++.+.... ++.. ++.+... + +....+++....
T Consensus 163 ~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nh----fdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~ 238 (415)
T TIGR00767 163 APIGKGQRGLIVAPPKAGKTVLLQKIAQAITRNH----PEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQ 238 (415)
T ss_pred EEeCCCCEEEEECCCCCChhHHHHHHHHhhcccC----CceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHH
Confidence 3467789999999999999999999999876441 1111 2222211 0 111112222211
Q ss_pred -HHHHHHHHHHHHHhccCcEEEEEechhhHHHHh
Q 014376 251 -VAKLFQKIQEMVEEENNLVFVLIDEVESLAAAR 283 (426)
Q Consensus 251 -v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r 283 (426)
...+.+.++.+. .....++|+|||+..++...
T Consensus 239 va~~v~e~Ae~~~-~~GkdVVLlIDEitR~arAq 271 (415)
T TIGR00767 239 VAEMVIEKAKRLV-EHKKDVVILLDSITRLARAY 271 (415)
T ss_pred HHHHHHHHHHHHH-HcCCCeEEEEEChhHHHHHH
Confidence 223334444443 34677899999999998654
No 413
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.03 E-value=8.2e-06 Score=89.60 Aligned_cols=43 Identities=21% Similarity=0.287 Sum_probs=34.3
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (426)
+.++.|..+.|.||+|+|||||++.|++.+. |..+.+.+++.+
T Consensus 500 l~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~-------p~~G~I~idg~~ 542 (710)
T TIGR03796 500 LTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ-------PWSGEILFDGIP 542 (710)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-------CCCcEEEECCEe
Confidence 5677899999999999999999999999884 344456665543
No 414
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.03 E-value=7.3e-06 Score=78.31 Aligned_cols=30 Identities=37% Similarity=0.469 Sum_probs=27.6
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (426)
+.+..|..+.|.||+|+|||||+++|++.+
T Consensus 17 l~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~ 46 (248)
T PRK03695 17 AEVRAGEILHLVGPNGAGKSTLLARMAGLL 46 (248)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 567789999999999999999999999876
No 415
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.03 E-value=0.00025 Score=66.84 Aligned_cols=169 Identities=18% Similarity=0.215 Sum_probs=91.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccccc-----ccccchH----HHHH-HHHH---HHHHH
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFS-----KWFSESG----KLVA-KLFQ---KIQEM 261 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~-----~~~~e~~----~~v~-~~f~---~~~~~ 261 (426)
+.+.++|+.|||||.++|++...++.. ..-.+.++.+.+.. .|+.+.. ..+. .+++ .....
T Consensus 52 g~~~vtGevGsGKTv~~Ral~~s~~~d------~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al 125 (269)
T COG3267 52 GILAVTGEVGSGKTVLRRALLASLNED------QVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAAL 125 (269)
T ss_pred ceEEEEecCCCchhHHHHHHHHhcCCC------ceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHH
Confidence 478999999999999999888777522 11224566554432 1111111 1222 2222 22233
Q ss_pred HHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCcC----CHHHhcccCe
Q 014376 262 VEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAI----DIAFVDRADI 337 (426)
Q Consensus 262 ~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~l----d~al~~R~~~ 337 (426)
...-..|.++++||++.+.... ......|.+.-++....-.++.++-...-..+ -..+..|+++
T Consensus 126 ~~~g~r~v~l~vdEah~L~~~~------------le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~i 193 (269)
T COG3267 126 VKKGKRPVVLMVDEAHDLNDSA------------LEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDI 193 (269)
T ss_pred HHhCCCCeEEeehhHhhhChhH------------HHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEE
Confidence 3344677999999998886522 11222222221121111224444433222211 1233478988
Q ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhc
Q 014376 338 KAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEK 386 (426)
Q Consensus 338 ~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~ 386 (426)
.+.+++.+.++....++..++.......+ -....+..+....+|
T Consensus 194 r~~l~P~~~~~t~~yl~~~Le~a~~~~~l-----~~~~a~~~i~~~sqg 237 (269)
T COG3267 194 RIELPPLTEAETGLYLRHRLEGAGLPEPL-----FSDDALLLIHEASQG 237 (269)
T ss_pred EEecCCcChHHHHHHHHHHHhccCCCccc-----CChhHHHHHHHHhcc
Confidence 89999999999999999999876322211 122234555555566
No 416
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.03 E-value=5.4e-06 Score=87.85 Aligned_cols=41 Identities=27% Similarity=0.373 Sum_probs=33.3
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEec
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (426)
+.+++|+.+.|.||+|+|||||++.+++.+. |+.+-+.+++
T Consensus 356 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-------p~~G~I~i~g 396 (529)
T TIGR02868 356 LDLPPGERVAILGPSGSGKSTLLMLLTGLLD-------PLQGEVTLDG 396 (529)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-------CCCcEEEECC
Confidence 5677899999999999999999999999874 3444455555
No 417
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.03 E-value=5.3e-05 Score=67.30 Aligned_cols=44 Identities=30% Similarity=0.425 Sum_probs=33.6
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (426)
+.+..|..+-|.||+|+|||||.-.+|+.- .+.++-+.+-++.+
T Consensus 31 L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd-------~~ssGeV~l~G~~L 74 (228)
T COG4181 31 LVVKRGETVAIVGPSGSGKSTLLAVLAGLD-------DPSSGEVRLLGQPL 74 (228)
T ss_pred EEecCCceEEEEcCCCCcHHhHHHHHhcCC-------CCCCceEEEcCcch
Confidence 456778999999999999999999999865 33444455555444
No 418
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.03 E-value=3.6e-05 Score=72.93 Aligned_cols=31 Identities=39% Similarity=0.530 Sum_probs=28.2
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 42 ~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~ 72 (236)
T cd03267 42 FTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ 72 (236)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 5677899999999999999999999999874
No 419
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.02 E-value=8e-06 Score=79.47 Aligned_cols=31 Identities=23% Similarity=0.424 Sum_probs=27.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 31 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 61 (280)
T PRK13633 31 LEVKKGEFLVILGRNGSGKSTIAKHMNALLI 61 (280)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5667799999999999999999999999874
No 420
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.02 E-value=6.7e-05 Score=78.86 Aligned_cols=135 Identities=19% Similarity=0.240 Sum_probs=76.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcc----eEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEE
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQC----QLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVF 270 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~----~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~i 270 (426)
-+|||+|.||||||-+++.+++.+....+.-..++ -..++.-..-...++-+++..+. ...++
T Consensus 463 INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtrd~dtkqlVLesGALVL-------------SD~Gi 529 (804)
T KOG0478|consen 463 INILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTKDPDTRQLVLESGALVL-------------SDNGI 529 (804)
T ss_pred ceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEecCccceeeeecCcEEE-------------cCCce
Confidence 46999999999999999999998854321100000 01111111111122223322111 24467
Q ss_pred EEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhh----hc-------CCCcEEEEEEeCCCCc-------------
Q 014376 271 VLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK----LK-------SSPNVIILTTSNITAA------------- 326 (426)
Q Consensus 271 llIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~----l~-------~~~~viVi~TtN~~~~------------- 326 (426)
-.|||+|++.....+ + |++.|++ +. -+.+.-|+++.|+...
T Consensus 530 CCIDEFDKM~dStrS------------v---LhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~ 594 (804)
T KOG0478|consen 530 CCIDEFDKMSDSTRS------------V---LHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENIN 594 (804)
T ss_pred EEchhhhhhhHHHHH------------H---HHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccC
Confidence 789999999653322 2 2333321 11 1235678888885432
Q ss_pred CCHHHhcccCeEE-EeCCCCHHHHHHHHHHHH
Q 014376 327 IDIAFVDRADIKA-YVGPPTLQARYEILRSCL 357 (426)
Q Consensus 327 ld~al~~R~~~~i-~i~~p~~~~r~~Il~~~l 357 (426)
+.+.|++|||.++ -++.|++..-+.+-.+..
T Consensus 595 LpptLLSRFDLIylllD~~DE~~Dr~La~Hiv 626 (804)
T KOG0478|consen 595 LPPTLLSRFDLIFLLLDKPDERSDRRLADHIV 626 (804)
T ss_pred CChhhhhhhcEEEEEecCcchhHHHHHHHHHH
Confidence 4789999999876 567787764444444433
No 421
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.02 E-value=1.1e-05 Score=85.51 Aligned_cols=31 Identities=35% Similarity=0.480 Sum_probs=28.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.++.|..+.|.||+|+|||||++.|++.+.
T Consensus 343 l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 373 (529)
T TIGR02857 343 FTVPPGERVALVGPSGAGKSTLLNLLLGFVD 373 (529)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5677799999999999999999999999884
No 422
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.02 E-value=1.8e-05 Score=70.87 Aligned_cols=44 Identities=27% Similarity=0.346 Sum_probs=36.7
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccc
Q 014376 190 LVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLF 240 (426)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~ 240 (426)
.+..++.+-+.||+|+|||||...||+-. .|..+.+.+++.+..
T Consensus 21 ~v~~ge~vAi~GpSGaGKSTLLnLIAGF~-------~P~~G~i~i~g~d~t 64 (231)
T COG3840 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFE-------TPASGEILINGVDHT 64 (231)
T ss_pred eecCCcEEEEECCCCccHHHHHHHHHhcc-------CCCCceEEEcCeecC
Confidence 45668999999999999999999999987 566677888876654
No 423
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.01 E-value=4.1e-05 Score=74.30 Aligned_cols=31 Identities=32% Similarity=0.491 Sum_probs=28.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 23 l~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (275)
T PRK13639 23 FKAEKGEMVALLGPNGAGKSTLFLHFNGILK 53 (275)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5677799999999999999999999999774
No 424
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.01 E-value=9e-05 Score=68.43 Aligned_cols=32 Identities=38% Similarity=0.524 Sum_probs=28.6
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
+.+..|..+.|.||+|+|||||++.|++....
T Consensus 26 ~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~ 57 (204)
T cd03250 26 LEVPKGELVAIVGPVGSGKSSLLSALLGELEK 57 (204)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCcCCC
Confidence 56777999999999999999999999998743
No 425
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.01 E-value=9.1e-06 Score=79.24 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=28.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 27 ~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~ 57 (283)
T PRK13636 27 INIKKGEVTAILGGNGAGKSTLFQNLNGILK 57 (283)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5677799999999999999999999999874
No 426
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.00 E-value=1.5e-05 Score=85.19 Aligned_cols=41 Identities=20% Similarity=0.403 Sum_probs=32.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEec
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (426)
+.+..|..+.|.|++|+|||||++.|++.+. |..+.+.+++
T Consensus 353 l~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~-------~~~G~I~i~g 393 (571)
T TIGR02203 353 LVIEPGETVALVGRSGSGKSTLVNLIPRFYE-------PDSGQILLDG 393 (571)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhccC-------CCCCeEEECC
Confidence 4567799999999999999999999999884 3444455554
No 427
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.00 E-value=3e-05 Score=79.11 Aligned_cols=172 Identities=19% Similarity=0.220 Sum_probs=95.5
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEec
Q 014376 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (426)
Q Consensus 157 ~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (426)
-...+||....-..+++.+.. -... +..|||.|.+||||-.+||+|-+.... ...+++.+||
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~---VA~S---------d~tVLi~GETGtGKElvAraIH~~S~R------~~kPfV~~NC 282 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEV---VAKS---------DSTVLIRGETGTGKELVARAIHQLSPR------RDKPFVKLNC 282 (550)
T ss_pred ccccceecCHHHHHHHHHHHH---HhcC---------CCeEEEecCCCccHHHHHHHHHhhCcc------cCCCceeeec
Confidence 344677777665555555431 1222 356999999999999999999887653 3567799999
Q ss_pred ccccc-----ccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhh--h
Q 014376 237 HSLFS-----KWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK--L 309 (426)
Q Consensus 237 ~~l~~-----~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~--l 309 (426)
..+-. ..||.....+...+..-+..+ +..+.+-+|+|||..+.- ..+..||+.+.. +
T Consensus 283 AAlPesLlESELFGHeKGAFTGA~~~r~GrF-ElAdGGTLFLDEIGelPL---------------~lQaKLLRvLQegEi 346 (550)
T COG3604 283 AALPESLLESELFGHEKGAFTGAINTRRGRF-ELADGGTLFLDEIGELPL---------------ALQAKLLRVLQEGEI 346 (550)
T ss_pred cccchHHHHHHHhcccccccccchhccCcce-eecCCCeEechhhccCCH---------------HHHHHHHHHHhhcce
Confidence 87632 222222111111111111111 113457899999987754 344556665542 1
Q ss_pred cC---C----CcEEEEEEeCCCCc-------CCHHHhcccCeEEEeCCCCHHHH----HHHHHHHHHHHHHh
Q 014376 310 KS---S----PNVIILTTSNITAA-------IDIAFVDRADIKAYVGPPTLQAR----YEILRSCLQELIRT 363 (426)
Q Consensus 310 ~~---~----~~viVi~TtN~~~~-------ld~al~~R~~~~i~i~~p~~~~r----~~Il~~~l~~l~~~ 363 (426)
.+ . -.+-||++||+.-. +-..+..|.. ++.+..|...+| --+.++++++....
T Consensus 347 eRvG~~r~ikVDVRiIAATNRDL~~~V~~G~FRaDLYyRLs-V~Pl~lPPLRER~~DIplLA~~Fle~~~~~ 417 (550)
T COG3604 347 ERVGGDRTIKVDVRVIAATNRDLEEMVRDGEFRADLYYRLS-VFPLELPPLRERPEDIPLLAGYFLEKFRRR 417 (550)
T ss_pred eecCCCceeEEEEEEEeccchhHHHHHHcCcchhhhhhccc-ccccCCCCcccCCccHHHHHHHHHHHHHHh
Confidence 11 1 24889999997532 2222334542 333444444443 34455666666543
No 428
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.00 E-value=4.7e-05 Score=73.73 Aligned_cols=31 Identities=39% Similarity=0.483 Sum_probs=27.8
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 28 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 58 (272)
T PRK15056 28 FTVPGGSIAALVGVNGSGKSTLFKALMGFVR 58 (272)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4567799999999999999999999999873
No 429
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.99 E-value=7.9e-05 Score=67.95 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 014376 197 VLLHGPPGTGKTSLCKALAQK 217 (426)
Q Consensus 197 vLL~GPpGtGKTtLaralA~~ 217 (426)
++|+||+|+||||++|.++..
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~ 22 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLI 22 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999999843
No 430
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=97.99 E-value=1.7e-05 Score=84.99 Aligned_cols=31 Identities=32% Similarity=0.462 Sum_probs=28.4
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+++|..+.|.||+|+|||||++.+++.+.
T Consensus 361 l~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~ 391 (576)
T TIGR02204 361 LTVRPGETVALVGPSGAGKSTLFQLLLRFYD 391 (576)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 5677899999999999999999999999884
No 431
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.99 E-value=3.6e-05 Score=78.53 Aligned_cols=31 Identities=19% Similarity=0.474 Sum_probs=28.5
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 49 l~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~ 79 (400)
T PRK10070 49 LAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE 79 (400)
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 5678899999999999999999999999874
No 432
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.99 E-value=4.4e-05 Score=72.05 Aligned_cols=31 Identities=29% Similarity=0.407 Sum_probs=28.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~ 51 (232)
T cd03300 21 LDIKEGEFFTLLGPSGCGKTTLLRLIAGFET 51 (232)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4567799999999999999999999999884
No 433
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.99 E-value=2.1e-05 Score=79.80 Aligned_cols=31 Identities=29% Similarity=0.388 Sum_probs=28.6
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 45 f~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~ 75 (382)
T TIGR03415 45 LDIEEGEICVLMGLSGSGKSSLLRAVNGLNP 75 (382)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 6788899999999999999999999999874
No 434
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.99 E-value=1.1e-05 Score=86.62 Aligned_cols=30 Identities=43% Similarity=0.580 Sum_probs=27.8
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (426)
+.+++|+.+.|.||+|+|||||++.|++.+
T Consensus 371 l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 371 FTLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 567789999999999999999999999987
No 435
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.99 E-value=1.3e-05 Score=86.19 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=34.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (426)
+.++.|..+.|.|++|+|||||++.+++.+. |..+.+.+++.+
T Consensus 362 l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~-------p~~G~I~idg~~ 404 (592)
T PRK10790 362 LSVPSRGFVALVGHTGSGKSTLASLLMGYYP-------LTEGEIRLDGRP 404 (592)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcccC-------CCCceEEECCEE
Confidence 5677899999999999999999999999883 444556666644
No 436
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.97 E-value=4.2e-05 Score=79.91 Aligned_cols=31 Identities=32% Similarity=0.387 Sum_probs=27.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 45 fsI~~GEivgIiGpNGSGKSTLLkiLaGLl~ 75 (549)
T PRK13545 45 FEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM 75 (549)
T ss_pred EEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 5567799999999999999999999999874
No 437
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=97.97 E-value=1.5e-05 Score=87.63 Aligned_cols=42 Identities=26% Similarity=0.440 Sum_probs=34.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (426)
+.+++|..+.|.||+|+|||||++.|++.+. |..+.+.+++.
T Consensus 502 l~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~-------p~~G~I~idg~ 543 (711)
T TIGR00958 502 FTLHPGEVVALVGPSGSGKSTVAALLQNLYQ-------PTGGQVLLDGV 543 (711)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhccC-------CCCCEEEECCE
Confidence 5677899999999999999999999999884 34444555553
No 438
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.97 E-value=1.2e-05 Score=88.01 Aligned_cols=42 Identities=24% Similarity=0.264 Sum_probs=33.8
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (426)
+.++.|..+.|.||+|+|||||++.|++.+. |..+.+.+++.
T Consensus 486 l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~-------p~~G~I~idg~ 527 (694)
T TIGR03375 486 LTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ-------PTEGSVLLDGV 527 (694)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCC-------CCCceEEECCE
Confidence 5677899999999999999999999999884 34444556553
No 439
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.96 E-value=1.2e-05 Score=75.11 Aligned_cols=44 Identities=30% Similarity=0.366 Sum_probs=36.4
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (426)
+.+..|+.+.|.||+|+||||+...|.+.+ .|+++.+.+++.++
T Consensus 25 l~v~~Gei~~LIGPNGAGKTTlfNlitG~~-------~P~~G~v~~~G~~i 68 (250)
T COG0411 25 LEVRPGEIVGLIGPNGAGKTTLFNLITGFY-------KPSSGTVIFRGRDI 68 (250)
T ss_pred EEEcCCeEEEEECCCCCCceeeeeeecccc-------cCCCceEEECCccc
Confidence 567789999999999999999999999888 45566677776654
No 440
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.96 E-value=1.2e-05 Score=87.88 Aligned_cols=43 Identities=23% Similarity=0.383 Sum_probs=34.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (426)
+.++.|..+.|.||+|+|||||++.|++.+. |..+.+.+++.+
T Consensus 474 l~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~-------p~~G~I~idg~~ 516 (686)
T TIGR03797 474 LQIEPGEFVAIVGPSGSGKSTLLRLLLGFET-------PESGSVFYDGQD 516 (686)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCC-------CCCCEEEECCEE
Confidence 5677899999999999999999999999884 444556666544
No 441
>PRK04296 thymidine kinase; Provisional
Probab=97.96 E-value=7.3e-05 Score=68.54 Aligned_cols=26 Identities=15% Similarity=0.232 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
|..++++||+|+||||++..++..+.
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~ 27 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYE 27 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 56799999999999999998888773
No 442
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.96 E-value=1.1e-05 Score=77.92 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=36.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (426)
+.|..|..+.+.|.+|+|||||+|++...- .|+.+-+.+++.++
T Consensus 27 L~I~~GeI~GIIG~SGAGKSTLiR~iN~Le-------~PtsG~v~v~G~di 70 (339)
T COG1135 27 LEIPKGEIFGIIGYSGAGKSTLLRLINLLE-------RPTSGSVFVDGQDL 70 (339)
T ss_pred EEEcCCcEEEEEcCCCCcHHHHHHHHhccC-------CCCCceEEEcCEec
Confidence 567889999999999999999999997654 45666677887554
No 443
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.96 E-value=6.9e-05 Score=74.00 Aligned_cols=125 Identities=16% Similarity=0.267 Sum_probs=68.3
Q ss_pred CCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccc------------cccchHHHHH
Q 014376 185 GVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSK------------WFSESGKLVA 252 (426)
Q Consensus 185 g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~------------~~~e~~~~v~ 252 (426)
|+++ |+.++|+||||||||+||..++..... .+...++++.....+. +.-.......
T Consensus 51 Glp~-----G~iteI~G~~GsGKTtLaL~~~~~~~~------~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~e 119 (321)
T TIGR02012 51 GLPR-----GRIIEIYGPESSGKTTLALHAIAEAQK------AGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGE 119 (321)
T ss_pred CCcC-----CeEEEEECCCCCCHHHHHHHHHHHHHH------cCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHH
Confidence 5665 899999999999999998887766532 1334455654332110 0000000112
Q ss_pred HHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCC--C--CChhHHHHHHHHHHhhhhcCCCcEEEEEEeCC
Q 014376 253 KLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGS--E--PSDSIRVVNALLTQMDKLKSSPNVIILTTSNI 323 (426)
Q Consensus 253 ~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~--e--~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~ 323 (426)
+.+..+..++ ....+.+++||-+..+.+... +.+. + .....+.++.++..|..+....++.++.|...
T Consensus 120 q~l~~~~~li-~~~~~~lIVIDSv~al~~~~E--~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQv 191 (321)
T TIGR02012 120 QALEIAETLV-RSGAVDIIVVDSVAALVPKAE--IEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQI 191 (321)
T ss_pred HHHHHHHHHh-hccCCcEEEEcchhhhccchh--hcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 2233333322 235678999999988875321 1111 1 11223455566666666655566666666443
No 444
>PRK07261 topology modulation protein; Provisional
Probab=97.95 E-value=6.3e-05 Score=67.77 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=23.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccc
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKLSIRF 222 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (426)
.|+|+|+||+|||||++.|++.++.+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~ 28 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPV 28 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCe
Confidence 389999999999999999999886543
No 445
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.94 E-value=0.00013 Score=82.84 Aligned_cols=133 Identities=22% Similarity=0.359 Sum_probs=87.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccc------cccccchHHHH---HHHHHHHHHHHHhccC
Q 014376 197 VLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLF------SKWFSESGKLV---AKLFQKIQEMVEEENN 267 (426)
Q Consensus 197 vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~------~~~~~e~~~~v---~~~f~~~~~~~~~~~~ 267 (426)
+||-||+.+|||++...+|++.+..| +.||.|+-. +.|+......+ ..+.-.+. .+
T Consensus 891 ~LiQGpTSSGKTSMI~yla~~tghkf---------VRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAl------R~ 955 (4600)
T COG5271 891 LLIQGPTSSGKTSMILYLARETGHKF---------VRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEAL------RR 955 (4600)
T ss_pred EEEecCCCCCcchHHHHHHHHhCccE---------EEecCcccchHHHHhhceeecCCCceeeehhHHHHHH------hc
Confidence 99999999999999999999998766 888887643 22221111100 01111111 25
Q ss_pred cEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhh---------hcCCCcEEEEEEeCCCCc------CCHHHh
Q 014376 268 LVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK---------LKSSPNVIILTTSNITAA------IDIAFV 332 (426)
Q Consensus 268 ~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~---------l~~~~~viVi~TtN~~~~------ld~al~ 332 (426)
.-.+++||+.-.. ++...++|.||.--.. ..+++++.+++|.|+|.. +.+||+
T Consensus 956 GyWIVLDELNLAp------------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFR 1023 (4600)
T COG5271 956 GYWIVLDELNLAP------------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFR 1023 (4600)
T ss_pred CcEEEeeccccCc------------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHH
Confidence 5689999975332 2333444444432111 246789999999998865 689999
Q ss_pred cccCeEEEeCCCCHHHHHHHHHHHH
Q 014376 333 DRADIKAYVGPPTLQARYEILRSCL 357 (426)
Q Consensus 333 ~R~~~~i~i~~p~~~~r~~Il~~~l 357 (426)
.|| ..++|..-...+...|++..+
T Consensus 1024 NRF-lE~hFddipedEle~ILh~rc 1047 (4600)
T COG5271 1024 NRF-LEMHFDDIPEDELEEILHGRC 1047 (4600)
T ss_pred hhh-HhhhcccCcHHHHHHHHhccC
Confidence 999 677787777888888876533
No 446
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.93 E-value=0.00014 Score=65.69 Aligned_cols=22 Identities=41% Similarity=0.573 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 014376 197 VLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 197 vLL~GPpGtGKTtLaralA~~l 218 (426)
++++||||||||+++..++...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~ 23 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAG 23 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 7899999999999999887765
No 447
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.92 E-value=2.2e-05 Score=84.02 Aligned_cols=31 Identities=23% Similarity=0.535 Sum_probs=28.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.++.|..+.|.||+|+|||||++.|++.+.
T Consensus 336 ~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~ 366 (569)
T PRK10789 336 FTLKPGQMLGICGPTGSGKSTLLSLIQRHFD 366 (569)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4567799999999999999999999999874
No 448
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.92 E-value=1.2e-05 Score=83.97 Aligned_cols=56 Identities=25% Similarity=0.392 Sum_probs=45.6
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
..|++..|.+++++++.+++..+.. |... .++.++|+||||+|||+|+++|++.+.
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~Aa~----gl~~----~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRHAAQ----GLEE----KKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHHHHH----hcCC----CCceEEEecCCCCCchHHHHHHHHHHH
Confidence 4678899999999999999865443 2211 257899999999999999999999885
No 449
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.92 E-value=1.9e-05 Score=83.97 Aligned_cols=31 Identities=23% Similarity=0.489 Sum_probs=28.2
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.++.|..+.|.||+|+|||||++.+++.+.
T Consensus 339 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 369 (544)
T TIGR01842 339 FRLQAGEALAIIGPSGSGKSTLARLIVGIWP 369 (544)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5567799999999999999999999999884
No 450
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=97.92 E-value=7.9e-05 Score=74.08 Aligned_cols=45 Identities=22% Similarity=0.380 Sum_probs=37.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLF 240 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~ 240 (426)
..|+.|..|+|.|.+||||||+|+.+.+.. .|+++-|.+|+.-+.
T Consensus 344 l~ikrGelvFliG~NGsGKST~~~LLtGL~-------~PqsG~I~ldg~pV~ 388 (546)
T COG4615 344 LTIKRGELVFLIGGNGSGKSTLAMLLTGLY-------QPQSGEILLDGKPVS 388 (546)
T ss_pred eEEecCcEEEEECCCCCcHHHHHHHHhccc-------CCCCCceeECCccCC
Confidence 457788999999999999999999999988 456666888876543
No 451
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.92 E-value=9.3e-05 Score=69.03 Aligned_cols=27 Identities=37% Similarity=0.626 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
.|..++|+|+||+|||++|..+|....
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~ 44 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETA 44 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 388999999999999999999998774
No 452
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=97.92 E-value=1.9e-05 Score=86.63 Aligned_cols=42 Identities=21% Similarity=0.337 Sum_probs=33.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (426)
+.++.|..+.|.||+|+|||||++.|++.+. |..+-+.+++.
T Consensus 495 l~i~~G~~vaIvG~SGsGKSTLlklL~gl~~-------p~~G~I~idg~ 536 (708)
T TIGR01193 495 LTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ-------ARSGEILLNGF 536 (708)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhccCC-------CCCcEEEECCE
Confidence 5677899999999999999999999999884 34445666654
No 453
>PRK13695 putative NTPase; Provisional
Probab=97.92 E-value=0.00015 Score=65.33 Aligned_cols=24 Identities=42% Similarity=0.718 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
.++|.|++|+|||||++.+++.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999988763
No 454
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.91 E-value=6.7e-05 Score=70.24 Aligned_cols=44 Identities=32% Similarity=0.388 Sum_probs=36.6
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (426)
+.+..|+.+-|.||+|+||||+.|+|.+.+. |+.+.+.+++..+
T Consensus 23 f~v~~G~i~GllG~NGAGKTTtfRmILglle-------~~~G~I~~~g~~~ 66 (300)
T COG4152 23 FEVPPGEIFGLLGPNGAGKTTTFRMILGLLE-------PTEGEITWNGGPL 66 (300)
T ss_pred eeecCCeEEEeecCCCCCccchHHHHhccCC-------ccCceEEEcCcch
Confidence 5677899999999999999999999999884 4556677777544
No 455
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=6.3e-05 Score=67.78 Aligned_cols=41 Identities=32% Similarity=0.471 Sum_probs=33.4
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEec
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (426)
|.+..|..+.+.||+|+|||||.|.||+.+. |.++-+..+.
T Consensus 23 f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~-------p~~G~v~~~~ 63 (209)
T COG4133 23 FTLNAGEALQITGPNGAGKTTLLRILAGLLR-------PDAGEVYWQG 63 (209)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHHcccC-------CCCCeEEecC
Confidence 4567799999999999999999999999994 4455555553
No 456
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.91 E-value=3.5e-05 Score=69.30 Aligned_cols=50 Identities=34% Similarity=0.411 Sum_probs=30.7
Q ss_pred hhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 161 LIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 161 lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
++|.++..++|..++. ...+- .++.++|+|++|+|||++++.+...+..+
T Consensus 2 fvgR~~e~~~l~~~l~-----~~~~~------~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-----AAQSG------SPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -TT-HHHHHHHHHTTG-----GTSS-----------EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-----HHHcC------CCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4666777777766653 11111 24679999999999999999999888654
No 457
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.90 E-value=0.00012 Score=69.19 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=20.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQK 217 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~ 217 (426)
.+..++|.||||||||+++..++..
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~ 47 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYG 47 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999997544443
No 458
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.90 E-value=0.00015 Score=71.29 Aligned_cols=166 Identities=19% Similarity=0.256 Sum_probs=97.3
Q ss_pred chhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEE
Q 014376 155 DGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEV 234 (426)
Q Consensus 155 ~~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i 234 (426)
..-|+.+++....-+.+.+.+ ..++...- .+||.|.+||||-.+||+--.... ..+.+++-+
T Consensus 200 ~~~F~~~v~~S~~mk~~v~qA---~k~AmlDA---------PLLI~GeTGTGKdLlAkaCH~~S~------R~~~pFlal 261 (511)
T COG3283 200 VSGFEQIVAVSPKMKHVVEQA---QKLAMLDA---------PLLITGETGTGKDLLAKACHLASP------RHSKPFLAL 261 (511)
T ss_pred ccchHHHhhccHHHHHHHHHH---HHhhccCC---------CeEEecCCCchHHHHHHHHhhcCc------ccCCCeeEe
Confidence 345778888776555554443 33333332 299999999999999998654432 346778999
Q ss_pred eccccccc-----cccchH--HHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhh
Q 014376 235 NAHSLFSK-----WFSESG--KLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMD 307 (426)
Q Consensus 235 ~~~~l~~~-----~~~e~~--~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld 307 (426)
||..+-.. .||... ..-..+|.. .+.+-+++|||..+.+ +.+..|++.+.
T Consensus 262 NCA~lPe~~aEsElFG~apg~~gk~GffE~--------AngGTVlLDeIgEmSp---------------~lQaKLLRFL~ 318 (511)
T COG3283 262 NCASLPEDAAESELFGHAPGDEGKKGFFEQ--------ANGGTVLLDEIGEMSP---------------RLQAKLLRFLN 318 (511)
T ss_pred ecCCCchhHhHHHHhcCCCCCCCccchhhh--------ccCCeEEeehhhhcCH---------------HHHHHHHHHhc
Confidence 99876421 122111 111223333 2457899999887765 56666777765
Q ss_pred h--hcC-------CCcEEEEEEeCCCCc-------CCHHHhcccCeEEEeCCCCHHHH----HHHHHHHHHHHHH
Q 014376 308 K--LKS-------SPNVIILTTSNITAA-------IDIAFVDRADIKAYVGPPTLQAR----YEILRSCLQELIR 362 (426)
Q Consensus 308 ~--l~~-------~~~viVi~TtN~~~~-------ld~al~~R~~~~i~i~~p~~~~r----~~Il~~~l~~l~~ 362 (426)
. +++ +-++-||++|..+-. +...+..|.. ++.+..|...+| .-+.+.++.+...
T Consensus 319 DGtFRRVGee~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfyRLN-VLtl~~PpLRer~~di~pL~e~Fv~q~s~ 392 (511)
T COG3283 319 DGTFRRVGEDHEVHVDVRVICATQVNLVELVQKGKFREDLFYRLN-VLTLNLPPLRERPQDIMPLAELFVQQFSD 392 (511)
T ss_pred CCceeecCCcceEEEEEEEEecccccHHHHHhcCchHHHHHHHhh-eeeecCCccccCcccchHHHHHHHHHHHH
Confidence 2 111 235889998876522 3444556653 444554444443 4455566665554
No 459
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.89 E-value=5.2e-05 Score=70.74 Aligned_cols=31 Identities=26% Similarity=0.514 Sum_probs=28.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||++.|++.+.
T Consensus 8 ~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 8 FVMGYHEHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 5677799999999999999999999999874
No 460
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=97.89 E-value=4.6e-06 Score=83.09 Aligned_cols=32 Identities=25% Similarity=0.316 Sum_probs=28.7
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
+.+..|..+.|.|++|+|||||+++|++.+..
T Consensus 37 l~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p 68 (330)
T PRK09473 37 FSLRAGETLGIVGESGSGKSQTAFALMGLLAA 68 (330)
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHHcCCCC
Confidence 56777999999999999999999999998853
No 461
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.89 E-value=0.0001 Score=70.79 Aligned_cols=30 Identities=37% Similarity=0.446 Sum_probs=27.3
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
+..|..+.|.||+|+|||||+++|++.+..
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p 52 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGKLKP 52 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 667899999999999999999999999853
No 462
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.89 E-value=6.2e-05 Score=79.29 Aligned_cols=31 Identities=29% Similarity=0.426 Sum_probs=28.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 25 ~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~ 55 (501)
T PRK10762 25 LNVYPGRVMALVGENGAGKSTMMKVLTGIYT 55 (501)
T ss_pred EEEcCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5567799999999999999999999999874
No 463
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=97.89 E-value=5.3e-05 Score=75.40 Aligned_cols=31 Identities=23% Similarity=0.438 Sum_probs=28.2
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.|++|+|||||+++|++.+.
T Consensus 36 l~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~ 66 (327)
T PRK11308 36 FTLERGKTLAVVGESGCGKSTLARLLTMIET 66 (327)
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHHcCCC
Confidence 5677799999999999999999999999873
No 464
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.89 E-value=5.4e-05 Score=79.53 Aligned_cols=31 Identities=32% Similarity=0.354 Sum_probs=27.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 19 ~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 49 (491)
T PRK10982 19 LKVRPHSIHALMGENGAGKSTLLKCLFGIYQ 49 (491)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 5567799999999999999999999999874
No 465
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.88 E-value=6.9e-05 Score=75.71 Aligned_cols=77 Identities=21% Similarity=0.380 Sum_probs=47.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccccccc------cc--------chHHHHHHHHHHHH
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKW------FS--------ESGKLVAKLFQKIQ 259 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~------~~--------e~~~~v~~~f~~~~ 259 (426)
|..++|+|+||+|||+|+..+|..+... +.++++++..+-.... ++ .....+..+++.+.
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~------g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR------GGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc------CCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 8899999999999999999999877432 2345666554321100 00 00111223333332
Q ss_pred HHHHhccCcEEEEEechhhHHH
Q 014376 260 EMVEEENNLVFVLIDEVESLAA 281 (426)
Q Consensus 260 ~~~~~~~~~~illIDEid~l~~ 281 (426)
...+.+|+||++..+..
T Consensus 156 -----~~~~~lVVIDSIq~l~~ 172 (372)
T cd01121 156 -----ELKPDLVIIDSIQTVYS 172 (372)
T ss_pred -----hcCCcEEEEcchHHhhc
Confidence 24788999999988854
No 466
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.87 E-value=0.00013 Score=73.07 Aligned_cols=96 Identities=21% Similarity=0.375 Sum_probs=53.9
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcce--EEEEeccc-------------cccccccchHHH---HH
Q 014376 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQ--LVEVNAHS-------------LFSKWFSESGKL---VA 252 (426)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~--~i~i~~~~-------------l~~~~~~e~~~~---v~ 252 (426)
+..|...+|.||+|||||||++.+++.+.... ++.. ++.|.-.. +...++.+.... +.
T Consensus 130 iGkGQR~LIvG~pGtGKTTLl~~la~~i~~~~----~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~ 205 (380)
T PRK12608 130 IGKGQRGLIVAPPRAGKTVLLQQIAAAVAANH----PEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVA 205 (380)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHHHHhcC----CCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHH
Confidence 34567799999999999999999999885431 2222 12222111 111111122211 11
Q ss_pred -HHHHHHHHHHHhccCcEEEEEechhhHHHHhhh-hccCCC
Q 014376 253 -KLFQKIQEMVEEENNLVFVLIDEVESLAAARKA-ALSGSE 291 (426)
Q Consensus 253 -~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~-~ls~~e 291 (426)
.+...+.. +.+....++|++||+..++..... .++.|+
T Consensus 206 ~~~~~~Ae~-f~~~GkdVVLvlDsltr~A~A~rei~~~~G~ 245 (380)
T PRK12608 206 ELVLERAKR-LVEQGKDVVILLDSLTRLARAYNNEVESSGR 245 (380)
T ss_pred HHHHHHHHH-HHHcCCCEEEEEeCcHHHHHHHHhhhcccCC
Confidence 22223333 334577899999999999876432 344443
No 467
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=97.87 E-value=0.00014 Score=68.01 Aligned_cols=22 Identities=32% Similarity=0.615 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQ 216 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~ 216 (426)
+.++|.||+|+||||++|.++.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6799999999999999999975
No 468
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.87 E-value=4.8e-05 Score=80.33 Aligned_cols=31 Identities=32% Similarity=0.354 Sum_probs=27.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 26 ~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 56 (510)
T PRK09700 26 LTVYPGEIHALLGENGAGKSTLMKVLSGIHE 56 (510)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcCCcC
Confidence 5667799999999999999999999999874
No 469
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.87 E-value=6.6e-05 Score=79.09 Aligned_cols=31 Identities=35% Similarity=0.398 Sum_probs=28.2
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 274 l~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~ 304 (501)
T PRK11288 274 FSVRAGEIVGLFGLVGAGRSELMKLLYGATR 304 (501)
T ss_pred EEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc
Confidence 5678899999999999999999999998873
No 470
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.87 E-value=0.00013 Score=61.90 Aligned_cols=54 Identities=22% Similarity=0.271 Sum_probs=40.7
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 158 ~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (426)
=..|.|+.-+++.+.+.+...+.-. +| .++-.+.|+|+||||||.+++.||+.+
T Consensus 24 ~~~l~GQhla~~~v~~ai~~~l~~~----~p---~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 24 QRNLFGQHLAVEVVVNAIKGHLANP----NP---RKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHHccCcHHHHHHHHHHHHHHHcCC----CC---CCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 3568888888888888876543211 11 235678899999999999999999997
No 471
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.87 E-value=2.8e-05 Score=85.15 Aligned_cols=43 Identities=28% Similarity=0.426 Sum_probs=33.8
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (426)
+.++.|..+.|.|++|+|||||++.|++.+. |..+.+.+++.+
T Consensus 478 l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~-------p~~G~I~idg~~ 520 (694)
T TIGR01846 478 LDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT-------PQHGQVLVDGVD 520 (694)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCC-------CCCceEEECCEe
Confidence 4567799999999999999999999999884 344445555543
No 472
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.86 E-value=0.00015 Score=70.32 Aligned_cols=139 Identities=19% Similarity=0.291 Sum_probs=69.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccc---------cccc------hHHHHHHHHHHH
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSK---------WFSE------SGKLVAKLFQKI 258 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~---------~~~e------~~~~v~~~f~~~ 258 (426)
.+.+.|+|++|+|||+||+.+++... ....| + ..+.++...-... .++. .........+.+
T Consensus 19 ~~~v~I~G~~G~GKT~LA~~~~~~~~--~~~~f-~-~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l 94 (287)
T PF00931_consen 19 VRVVAIVGMGGIGKTTLARQVARDLR--IKNRF-D-GVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQL 94 (287)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHCHHH--HCCCC-T-EEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHH
T ss_pred eEEEEEEcCCcCCcceeeeecccccc--ccccc-c-cccccccccccccccccccccccccccccccccccccccccccc
Confidence 57899999999999999999998732 11112 1 2233333221110 0000 011122233334
Q ss_pred HHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeE
Q 014376 259 QEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIK 338 (426)
Q Consensus 259 ~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~ 338 (426)
.+.+. ..+.++++|+++.... ...+...+... ..+.-||.||........ . ......
T Consensus 95 ~~~L~--~~~~LlVlDdv~~~~~-----------------~~~l~~~~~~~--~~~~kilvTTR~~~v~~~-~-~~~~~~ 151 (287)
T PF00931_consen 95 RELLK--DKRCLLVLDDVWDEED-----------------LEELREPLPSF--SSGSKILVTTRDRSVAGS-L-GGTDKV 151 (287)
T ss_dssp HHHHC--CTSEEEEEEEE-SHHH-----------------H-------HCH--HSS-EEEEEESCGGGGTT-H-HSCEEE
T ss_pred hhhhc--cccceeeeeeeccccc-----------------ccccccccccc--cccccccccccccccccc-c-cccccc
Confidence 44333 3489999999876541 12222222211 123445555554332211 1 111467
Q ss_pred EEeCCCCHHHHHHHHHHHHHH
Q 014376 339 AYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 339 i~i~~p~~~~r~~Il~~~l~~ 359 (426)
+.++..+.++-.+++......
T Consensus 152 ~~l~~L~~~ea~~L~~~~~~~ 172 (287)
T PF00931_consen 152 IELEPLSEEEALELFKKRAGR 172 (287)
T ss_dssp EECSS--HHHHHHHHHHHHTS
T ss_pred ccccccccccccccccccccc
Confidence 899999999999988887543
No 473
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.86 E-value=0.0001 Score=72.93 Aligned_cols=120 Identities=14% Similarity=0.241 Sum_probs=64.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccc------------cccchHHHHHHHHHHHHHH
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSK------------WFSESGKLVAKLFQKIQEM 261 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~------------~~~e~~~~v~~~f~~~~~~ 261 (426)
|+.+.++||||||||+||-.++...... +...++++...-+.. .+-.......+.+..+..+
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~------g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~l 128 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKL------GGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSL 128 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc------CCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHH
Confidence 8899999999999999999988665321 234455555331110 0000000112233333333
Q ss_pred HHhccCcEEEEEechhhHHHHhhhhccCCC----CChhHHHHHHHHHHhhhhcCCCcEEEEEEeC
Q 014376 262 VEEENNLVFVLIDEVESLAAARKAALSGSE----PSDSIRVVNALLTQMDKLKSSPNVIILTTSN 322 (426)
Q Consensus 262 ~~~~~~~~illIDEid~l~~~r~~~ls~~e----~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN 322 (426)
+. .....+++||-+..+.+... +.+.. .....+.+...+..|.......++.+|.|..
T Consensus 129 i~-s~~~~lIVIDSvaal~~~~E--~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQ 190 (325)
T cd00983 129 VR-SGAVDLIVVDSVAALVPKAE--IEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQ 190 (325)
T ss_pred Hh-ccCCCEEEEcchHhhccccc--ccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 22 35678999999988875321 11111 0112344455566555554555666666544
No 474
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.85 E-value=0.00034 Score=62.34 Aligned_cols=28 Identities=25% Similarity=0.564 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
++..++.||+|+|||+++++++-.+...
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~~~~~~ 48 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGLALGGA 48 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4589999999999999999987776543
No 475
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=97.85 E-value=6.6e-05 Score=74.87 Aligned_cols=31 Identities=16% Similarity=0.288 Sum_probs=28.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.|++|+|||||+++|++.+.
T Consensus 42 l~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~ 72 (331)
T PRK15079 42 LRLYEGETLGVVGESGCGKSTFARAIIGLVK 72 (331)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHCCCC
Confidence 5677799999999999999999999999874
No 476
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=97.85 E-value=3.2e-05 Score=83.09 Aligned_cols=31 Identities=32% Similarity=0.506 Sum_probs=28.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.++.|..+.|.||+|+|||||++.+++.+.
T Consensus 356 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 386 (585)
T TIGR01192 356 FEAKAGQTVAIVGPTGAGKTTLINLLQRVYD 386 (585)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHccCCC
Confidence 5667799999999999999999999999874
No 477
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.84 E-value=5.5e-05 Score=73.13 Aligned_cols=26 Identities=42% Similarity=0.562 Sum_probs=23.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
.+++|.||||+|||||++++++.+..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCC
Confidence 46999999999999999999999853
No 478
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.84 E-value=3.7e-05 Score=82.35 Aligned_cols=42 Identities=26% Similarity=0.380 Sum_probs=33.4
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (426)
+.++.|..+.|.||+|+|||||++.+++.+. |..+.+.+++.
T Consensus 361 ~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~-------p~~G~I~i~g~ 402 (574)
T PRK11160 361 LQIKAGEKVALLGRTGCGKSTLLQLLTRAWD-------PQQGEILLNGQ 402 (574)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCC-------CCCceEEECCE
Confidence 5677799999999999999999999999884 33444555543
No 479
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=97.84 E-value=3.9e-05 Score=81.91 Aligned_cols=43 Identities=23% Similarity=0.376 Sum_probs=33.7
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (426)
+.+..|..+.|.||+|+|||||++.|++.+. |+.+.+.+++.+
T Consensus 363 ~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-------p~~G~i~~~g~~ 405 (555)
T TIGR01194 363 LRIAQGDIVFIVGENGCGKSTLAKLFCGLYI-------PQEGEILLDGAA 405 (555)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-------CCCcEEEECCEE
Confidence 5677899999999999999999999999873 344445555433
No 480
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=97.84 E-value=3.5e-05 Score=90.45 Aligned_cols=32 Identities=19% Similarity=0.379 Sum_probs=28.6
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
+.++.|..+.|.||+||||||+++.|.+.+..
T Consensus 1189 l~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265 1189 FSCDSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 45667889999999999999999999999875
No 481
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.83 E-value=1.6e-05 Score=66.72 Aligned_cols=26 Identities=42% Similarity=0.990 Sum_probs=23.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
.|+|.|||||||||+|+.||+.++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~ 26 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFP 26 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCE
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCe
Confidence 48999999999999999999998643
No 482
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=97.83 E-value=9.3e-05 Score=73.67 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=28.6
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 28 l~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 28 YSVKQGEVVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 6678899999999999999999999999874
No 483
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=4.3e-05 Score=81.14 Aligned_cols=44 Identities=23% Similarity=0.441 Sum_probs=36.7
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (426)
+.|..|+.+-|.||+|+||||++..|-+.+ .|.++-|.+++.++
T Consensus 489 fti~pGe~vALVGPSGsGKSTiasLL~rfY-------~PtsG~IllDG~~i 532 (716)
T KOG0058|consen 489 FTIRPGEVVALVGPSGSGKSTIASLLLRFY-------DPTSGRILLDGVPI 532 (716)
T ss_pred eeeCCCCEEEEECCCCCCHHHHHHHHHHhc-------CCCCCeEEECCeeh
Confidence 567789999999999999999999998887 45666677777654
No 484
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.82 E-value=0.00015 Score=67.89 Aligned_cols=127 Identities=20% Similarity=0.266 Sum_probs=65.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccc-cccchH-------------------HHHH
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSK-WFSESG-------------------KLVA 252 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~-~~~e~~-------------------~~v~ 252 (426)
.|..+.|+||||+|||++|..+|.....+-.-......+++++...-+.. .+.... ....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPYNGE 97 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCCCHH
Confidence 38899999999999999999998875321100001255667766542210 000000 0011
Q ss_pred HHHHHHHHHHH--hccCcEEEEEechhhHHHHhhhhccCC-CCChhHHHHHHHHHHhhhhcCCCcEEEEEEeC
Q 014376 253 KLFQKIQEMVE--EENNLVFVLIDEVESLAAARKAALSGS-EPSDSIRVVNALLTQMDKLKSSPNVIILTTSN 322 (426)
Q Consensus 253 ~~f~~~~~~~~--~~~~~~illIDEid~l~~~r~~~ls~~-e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN 322 (426)
.+...+..+.. ......+++||-+..+..... .+. ......+.+..++..|..+....++.|+.|+.
T Consensus 98 ~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~---~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq 167 (226)
T cd01393 98 QQLEIVEELERIMSSGRVDLVVVDSVAALFRKEF---IGRGMLAERARLLSQALRKLLRLADKFNVAVVFTNQ 167 (226)
T ss_pred HHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhh---cCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEE
Confidence 11222222211 134678999999988765321 111 01122244556666676665555555555543
No 485
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.81 E-value=7.8e-05 Score=78.68 Aligned_cols=31 Identities=35% Similarity=0.460 Sum_probs=28.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 26 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (506)
T PRK13549 26 LKVRAGEIVSLCGENGAGKSTLMKVLSGVYP 56 (506)
T ss_pred EEEeCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5667799999999999999999999999874
No 486
>PHA00729 NTP-binding motif containing protein
Probab=97.81 E-value=2.5e-05 Score=73.13 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
.++|+|+|||||||||.+|+..++
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 599999999999999999999885
No 487
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.81 E-value=3.5e-05 Score=82.55 Aligned_cols=167 Identities=21% Similarity=0.261 Sum_probs=91.9
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHHhhcCCCCc-----cccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEE
Q 014376 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPF-----LVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLV 232 (426)
Q Consensus 158 ~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~-----~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i 232 (426)
.-++.|.+++|+.+.-.+ |+ |+... .+...-+|||.|.||+|||.|.+.+++.+....+....++.-+
T Consensus 285 aPsIyG~e~VKkAilLqL-----fg--Gv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~ 357 (682)
T COG1241 285 APSIYGHEDVKKAILLQL-----FG--GVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAA 357 (682)
T ss_pred cccccCcHHHHHHHHHHh-----cC--CCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEcccccccc
Confidence 445667777777655332 22 22111 1222347999999999999999999998854321100000000
Q ss_pred EEec----cccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhh
Q 014376 233 EVNA----HSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK 308 (426)
Q Consensus 233 ~i~~----~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~ 308 (426)
-+.+ ....+.|.-+.|..+. ...+|..|||+|++... ..+++...|++
T Consensus 358 GLTAav~rd~~tge~~LeaGALVl-------------AD~Gv~cIDEfdKm~~~---------------dr~aihEaMEQ 409 (682)
T COG1241 358 GLTAAVVRDKVTGEWVLEAGALVL-------------ADGGVCCIDEFDKMNEE---------------DRVAIHEAMEQ 409 (682)
T ss_pred CceeEEEEccCCCeEEEeCCEEEE-------------ecCCEEEEEeccCCChH---------------HHHHHHHHHHh
Confidence 0000 0111234434433221 35688999999987542 23445555553
Q ss_pred h----cCC-------CcEEEEEEeCCCCc-------------CCHHHhcccCeEEEe-CCCCHHHHHHHHHHHHHH
Q 014376 309 L----KSS-------PNVIILTTSNITAA-------------IDIAFVDRADIKAYV-GPPTLQARYEILRSCLQE 359 (426)
Q Consensus 309 l----~~~-------~~viVi~TtN~~~~-------------ld~al~~R~~~~i~i-~~p~~~~r~~Il~~~l~~ 359 (426)
- ... .++-|+++.|+..- ++++|++|||.++.+ ..|+.+.-..+.++.+..
T Consensus 410 QtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~ 485 (682)
T COG1241 410 QTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDK 485 (682)
T ss_pred cEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHH
Confidence 1 111 23556777777642 578899999988755 456666555555554443
No 488
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.81 E-value=1.4e-05 Score=83.18 Aligned_cols=43 Identities=26% Similarity=0.370 Sum_probs=35.6
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (426)
|.+..|..+-|.|++|||||||+|+|++.. .|.++.+.+++.+
T Consensus 312 f~l~~GE~lglVGeSGsGKSTlar~i~gL~-------~P~~G~i~~~g~~ 354 (539)
T COG1123 312 FDLREGETLGLVGESGSGKSTLARILAGLL-------PPSSGSIIFDGQD 354 (539)
T ss_pred eEecCCCEEEEECCCCCCHHHHHHHHhCCC-------CCCCceEEEeCcc
Confidence 678889999999999999999999999988 3455556666644
No 489
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.81 E-value=9.1e-05 Score=76.79 Aligned_cols=77 Identities=22% Similarity=0.373 Sum_probs=47.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccc------c--------chHHHHHHHHHHHH
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWF------S--------ESGKLVAKLFQKIQ 259 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~------~--------e~~~~v~~~f~~~~ 259 (426)
|..++|+|+||+|||+|+..++..... .+.++++++..+...... + .....+..+++.+.
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~------~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~ 153 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAA------AGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIE 153 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHh------cCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence 889999999999999999999987742 123456666543221100 0 00011223333332
Q ss_pred HHHHhccCcEEEEEechhhHHH
Q 014376 260 EMVEEENNLVFVLIDEVESLAA 281 (426)
Q Consensus 260 ~~~~~~~~~~illIDEid~l~~ 281 (426)
+ ..+.+++||++..+..
T Consensus 154 ~-----~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 154 E-----EKPDLVVIDSIQTMYS 170 (446)
T ss_pred h-----hCCCEEEEechhhhcc
Confidence 2 4678999999988754
No 490
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.81 E-value=8.1e-05 Score=78.43 Aligned_cols=31 Identities=32% Similarity=0.430 Sum_probs=28.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 273 l~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~ 303 (501)
T PRK10762 273 FTLRKGEILGVSGLMGAGRTELMKVLYGALP 303 (501)
T ss_pred EEEcCCcEEEEecCCCCCHHHHHHHHhCCCC
Confidence 5677899999999999999999999998873
No 491
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.80 E-value=0.00026 Score=66.32 Aligned_cols=115 Identities=18% Similarity=0.269 Sum_probs=60.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCC-Cc---------ceEEEEeccccccccccchHHHHHHHHHHHHHHH
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRY-PQ---------CQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMV 262 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~-~~---------~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~ 262 (426)
.++.++|+||+|.|||++++.++...-....+.+ |- .-+..+...+-... +. .....=..++..++
T Consensus 29 ~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i~~~~~~~d~~~~--~~--StF~~e~~~~~~il 104 (218)
T cd03286 29 SPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFTRIGARDDIMK--GE--STFMVELSETANIL 104 (218)
T ss_pred CCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEEEEecCccccccc--Cc--chHHHHHHHHHHHH
Confidence 4678999999999999999998876421110101 10 01111111111110 00 11111122233334
Q ss_pred HhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCC
Q 014376 263 EEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNI 323 (426)
Q Consensus 263 ~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~ 323 (426)
.....+.+++|||+.+ |..+.+.......+++.+.+. .+..+|++||+.
T Consensus 105 ~~~~~~sLvLlDE~~~----------Gt~~~dg~~la~ail~~L~~~--~~~~~i~~TH~~ 153 (218)
T cd03286 105 RHATPDSLVILDELGR----------GTSTHDGYAIAHAVLEYLVKK--VKCLTLFSTHYH 153 (218)
T ss_pred HhCCCCeEEEEecccC----------CCCchHHHHHHHHHHHHHHHh--cCCcEEEEeccH
Confidence 4446789999999542 344445555555656555431 356777888864
No 492
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=97.80 E-value=4.9e-05 Score=80.95 Aligned_cols=43 Identities=21% Similarity=0.408 Sum_probs=33.4
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (426)
+.++.|..+.|.||+|+|||||++.|++.+. |..+.+.+++.+
T Consensus 344 ~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~-------~~~G~i~~~g~~ 386 (547)
T PRK10522 344 LTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ-------PQSGEILLDGKP 386 (547)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-------CCCeEEEECCEE
Confidence 4677899999999999999999999999873 344445555443
No 493
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=97.79 E-value=2.7e-05 Score=83.33 Aligned_cols=43 Identities=23% Similarity=0.359 Sum_probs=33.4
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (426)
+.++.|..+.|.||+|+||||+++.+.+.+.. +.+-+.+++.+
T Consensus 350 ~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~-------~~G~I~idg~d 392 (567)
T COG1132 350 FSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP-------TSGEILIDGID 392 (567)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-------CCCeEEECCEe
Confidence 45677999999999999999999999998853 33445555533
No 494
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.79 E-value=0.00024 Score=73.32 Aligned_cols=142 Identities=18% Similarity=0.233 Sum_probs=80.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHH----------H
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMV----------E 263 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~----------~ 263 (426)
+..++++|.+|+||+++++++..... ....+++.++|..+...++ -..+|......+ -
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~------~~~~~~i~~~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~ 229 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSA------RSEKPLVTLNCAALNESLL------ESELFGHEKGAFTGADKRREGRF 229 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCC------CCCCCeeeeeCCCCCHHHH------HHHhcCCCCCCcCCCCcCCCCce
Confidence 46699999999999999999987653 2346779999987642211 111222110000 0
Q ss_pred hccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc--C-------CCcEEEEEEeCCCC-------cC
Q 014376 264 EENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK--S-------SPNVIILTTSNITA-------AI 327 (426)
Q Consensus 264 ~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~--~-------~~~viVi~TtN~~~-------~l 327 (426)
.....+.|+|||++.+... .+..++..++.-. . ..++.+|++|+..- .+
T Consensus 230 ~~a~~gtl~ldei~~l~~~---------------~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~ 294 (441)
T PRK10365 230 VEADGGTLFLDEIGDISPM---------------MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRF 294 (441)
T ss_pred eECCCCEEEEeccccCCHH---------------HHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCc
Confidence 1134678999999998763 3455565554311 0 12455666665432 23
Q ss_pred CHHHhcccC-eEEEeCCCCH--HHHHHHHHHHHHHHHH
Q 014376 328 DIAFVDRAD-IKAYVGPPTL--QARYEILRSCLQELIR 362 (426)
Q Consensus 328 d~al~~R~~-~~i~i~~p~~--~~r~~Il~~~l~~l~~ 362 (426)
.+.|..|+. ..+.+|+... ++...+++.++.++..
T Consensus 295 ~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~ 332 (441)
T PRK10365 295 RQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAE 332 (441)
T ss_pred hHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHH
Confidence 455555552 3444444432 2345566677766543
No 495
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=6.5e-05 Score=77.46 Aligned_cols=43 Identities=16% Similarity=0.363 Sum_probs=34.3
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (426)
++|+.|..|-|.|+|||||||++|+|-+-+. +.+-+.+++.++
T Consensus 373 f~I~kGekVaIvG~nGsGKSTilr~LlrF~d--------~sG~I~IdG~di 415 (591)
T KOG0057|consen 373 FTIPKGEKVAIVGSNGSGKSTILRLLLRFFD--------YSGSILIDGQDI 415 (591)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHHHhc--------cCCcEEECCeeH
Confidence 6788899999999999999999999988774 233366666544
No 496
>PRK08118 topology modulation protein; Reviewed
Probab=97.78 E-value=5.4e-05 Score=67.93 Aligned_cols=27 Identities=37% Similarity=0.696 Sum_probs=24.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccc
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKLSIRF 222 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (426)
.|+++||||+||||+|+.|++.++.++
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~ 29 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPV 29 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 489999999999999999999998765
No 497
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.77 E-value=0.00018 Score=75.75 Aligned_cols=33 Identities=33% Similarity=0.518 Sum_probs=28.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
+.+..|..|.|.||+|+|||||++.|++.++..
T Consensus 343 ~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~ 375 (530)
T COG0488 343 FRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL 375 (530)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhhhcccC
Confidence 345667889999999999999999999988644
No 498
>PLN03211 ABC transporter G-25; Provisional
Probab=97.77 E-value=0.00014 Score=79.02 Aligned_cols=31 Identities=35% Similarity=0.565 Sum_probs=27.8
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|+.+.|.||+|+|||||+++|++.+.
T Consensus 89 ~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~ 119 (659)
T PLN03211 89 GMASPGEILAVLGPSGSGKSTLLNALAGRIQ 119 (659)
T ss_pred EEEECCEEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4567799999999999999999999999864
No 499
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.77 E-value=5.3e-05 Score=84.98 Aligned_cols=44 Identities=27% Similarity=0.481 Sum_probs=37.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (426)
+.++.|..+.|.||+||||||+.+.|++.+. |..+-+.+++.++
T Consensus 374 l~i~~G~~valVG~SGsGKST~i~LL~Rfyd-------P~~G~V~idG~di 417 (1228)
T KOG0055|consen 374 LKIPSGQTVALVGPSGSGKSTLIQLLARFYD-------PTSGEVLIDGEDI 417 (1228)
T ss_pred EEeCCCCEEEEECCCCCCHHHHHHHHHHhcC-------CCCceEEEcCccc
Confidence 5677799999999999999999999999884 5556677777665
No 500
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.76 E-value=0.00014 Score=77.26 Aligned_cols=31 Identities=26% Similarity=0.278 Sum_probs=28.2
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||++.|++.+.
T Consensus 22 l~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~ 52 (530)
T PRK15064 22 VKFGGGNRYGLIGANGCGKSTFMKILGGDLE 52 (530)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5677899999999999999999999999874
Done!