Query 014376
Match_columns 426
No_of_seqs 453 out of 3173
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 10:27:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014376.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014376hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 3.7E-35 1.3E-39 294.2 20.3 217 153-398 142-364 (405)
2 4b4t_M 26S protease regulatory 100.0 3.5E-34 1.2E-38 290.9 21.8 219 151-398 173-397 (434)
3 4b4t_I 26S protease regulatory 100.0 4E-34 1.4E-38 287.6 19.6 218 152-398 175-398 (437)
4 4b4t_K 26S protease regulatory 100.0 3.1E-33 1.1E-37 283.7 23.9 218 152-398 165-389 (428)
5 4b4t_H 26S protease regulatory 100.0 1.6E-33 5.6E-38 285.6 19.5 217 153-398 203-425 (467)
6 4b4t_L 26S protease subunit RP 100.0 1.9E-33 6.6E-38 285.7 19.6 217 153-398 175-397 (437)
7 3cf2_A TER ATPase, transitiona 100.0 3.6E-31 1.2E-35 286.4 6.3 215 155-398 473-693 (806)
8 3cf2_A TER ATPase, transitiona 100.0 6.4E-29 2.2E-33 268.8 16.0 211 156-398 201-417 (806)
9 1xwi_A SKD1 protein; VPS4B, AA 100.0 4E-27 1.4E-31 231.9 22.0 217 155-398 8-225 (322)
10 3cf0_A Transitional endoplasmi 99.9 1.2E-26 4E-31 226.4 21.4 215 155-398 11-231 (301)
11 3eie_A Vacuolar protein sortin 99.9 8.8E-27 3E-31 229.3 19.0 215 156-398 15-230 (322)
12 2qp9_X Vacuolar protein sortin 99.9 5.3E-26 1.8E-30 226.9 20.4 214 154-398 46-263 (355)
13 2x8a_A Nuclear valosin-contain 99.9 1.8E-25 6.2E-30 215.2 21.4 215 155-398 6-228 (274)
14 1lv7_A FTSH; alpha/beta domain 99.9 6.5E-25 2.2E-29 208.6 20.5 216 153-397 6-226 (257)
15 3h4m_A Proteasome-activating n 99.9 9.4E-25 3.2E-29 210.3 21.4 214 155-397 13-232 (285)
16 2ce7_A Cell division protein F 99.9 7.3E-25 2.5E-29 225.6 20.9 216 154-398 11-231 (476)
17 2qz4_A Paraplegin; AAA+, SPG7, 99.9 6.1E-25 2.1E-29 208.5 18.7 216 156-397 3-223 (262)
18 2zan_A Vacuolar protein sortin 99.9 1.6E-25 5.3E-30 229.9 15.2 228 154-409 129-357 (444)
19 3hu3_A Transitional endoplasmi 99.9 5E-24 1.7E-28 220.7 19.4 210 156-397 201-416 (489)
20 3d8b_A Fidgetin-like protein 1 99.9 1.8E-23 6.1E-28 208.7 19.8 216 155-398 80-297 (357)
21 3b9p_A CG5977-PA, isoform A; A 99.9 2.7E-23 9.1E-28 201.4 19.1 215 155-397 17-234 (297)
22 3vfd_A Spastin; ATPase, microt 99.9 3.8E-23 1.3E-27 208.6 19.6 214 156-397 112-327 (389)
23 1ixz_A ATP-dependent metallopr 99.9 9E-23 3.1E-27 193.5 20.3 215 154-397 11-230 (254)
24 3t15_A Ribulose bisphosphate c 99.9 2.6E-22 9E-27 194.9 18.4 176 192-394 34-222 (293)
25 2r62_A Cell division protease 99.9 7.8E-25 2.7E-29 209.1 -0.5 215 154-396 6-226 (268)
26 1iy2_A ATP-dependent metallopr 99.9 1E-21 3.4E-26 189.0 21.1 215 154-397 35-254 (278)
27 2dhr_A FTSH; AAA+ protein, hex 99.9 5.1E-23 1.8E-27 213.0 12.8 215 155-398 27-246 (499)
28 1ypw_A Transitional endoplasmi 99.9 6.1E-25 2.1E-29 240.5 -6.4 219 155-398 473-693 (806)
29 1ypw_A Transitional endoplasmi 99.8 1.7E-20 5.7E-25 205.4 15.8 215 155-397 200-416 (806)
30 3syl_A Protein CBBX; photosynt 99.8 2.4E-18 8.2E-23 167.2 15.4 187 154-360 26-220 (309)
31 1ofh_A ATP-dependent HSL prote 99.7 1.7E-17 5.9E-22 160.6 10.3 191 151-355 7-213 (310)
32 3m6a_A ATP-dependent protease 99.7 6.2E-17 2.1E-21 169.9 14.1 170 155-359 77-268 (543)
33 2c9o_A RUVB-like 1; hexameric 99.7 1.3E-18 4.5E-23 179.0 1.0 174 154-346 32-226 (456)
34 3hws_A ATP-dependent CLP prote 99.7 1.3E-16 4.4E-21 159.1 14.8 188 157-355 13-267 (363)
35 3uk6_A RUVB-like 2; hexameric 99.7 9.1E-16 3.1E-20 152.5 19.9 197 156-394 41-301 (368)
36 3pfi_A Holliday junction ATP-d 99.7 8.4E-16 2.9E-20 151.2 18.1 157 157-359 27-199 (338)
37 1g41_A Heat shock protein HSLU 99.6 1.6E-16 5.6E-21 161.5 8.8 176 150-353 6-188 (444)
38 4fcw_A Chaperone protein CLPB; 99.6 4.3E-15 1.5E-19 144.1 17.8 176 156-362 14-234 (311)
39 2z4s_A Chromosomal replication 99.6 1.5E-15 5E-20 155.5 13.9 142 195-359 131-278 (440)
40 1jbk_A CLPB protein; beta barr 99.6 1.5E-16 5.2E-21 141.8 5.7 169 155-353 18-194 (195)
41 1um8_A ATP-dependent CLP prote 99.6 7E-15 2.4E-19 147.2 17.9 189 155-354 17-283 (376)
42 3u61_B DNA polymerase accessor 99.6 6E-15 2.1E-19 144.3 14.9 158 156-360 23-181 (324)
43 1d2n_A N-ethylmaleimide-sensit 99.6 5.3E-15 1.8E-19 141.3 13.7 159 194-387 64-229 (272)
44 3pxi_A Negative regulator of g 99.6 1.2E-14 4E-19 158.5 18.0 171 156-362 488-680 (758)
45 2r44_A Uncharacterized protein 99.6 8.8E-15 3E-19 143.7 14.7 154 156-359 24-200 (331)
46 1hqc_A RUVB; extended AAA-ATPa 99.6 1E-14 3.5E-19 142.2 14.8 158 157-359 10-183 (324)
47 1l8q_A Chromosomal replication 99.6 1.4E-14 4.7E-19 141.9 12.8 139 195-359 38-181 (324)
48 1r6b_X CLPA protein; AAA+, N-t 99.6 3.9E-14 1.3E-18 154.3 17.7 170 158-361 457-670 (758)
49 2chg_A Replication factor C sm 99.6 1.2E-13 4.1E-18 125.8 18.2 159 156-359 14-176 (226)
50 3te6_A Regulatory protein SIR3 99.5 1.3E-13 4.6E-18 134.6 17.0 172 161-361 22-215 (318)
51 1g8p_A Magnesium-chelatase 38 99.5 2.4E-14 8.1E-19 141.0 11.7 171 156-357 21-232 (350)
52 2v1u_A Cell division control p 99.5 3.3E-14 1.1E-18 141.3 12.7 181 159-359 19-216 (387)
53 3pvs_A Replication-associated 99.5 6.3E-14 2.2E-18 143.5 14.9 153 156-359 23-180 (447)
54 2p65_A Hypothetical protein PF 99.5 1.2E-14 4E-19 129.3 6.7 161 156-345 19-187 (187)
55 1sxj_A Activator 1 95 kDa subu 99.5 5.4E-14 1.9E-18 146.7 12.6 178 157-359 37-224 (516)
56 1njg_A DNA polymerase III subu 99.5 7.4E-13 2.5E-17 121.9 17.6 166 156-359 20-200 (250)
57 2qby_B CDC6 homolog 3, cell di 99.5 1.9E-13 6.6E-18 136.1 14.3 172 159-359 20-212 (384)
58 1qvr_A CLPB protein; coiled co 99.5 5.5E-14 1.9E-18 155.1 10.6 177 155-361 166-349 (854)
59 3pxg_A Negative regulator of g 99.5 5.6E-14 1.9E-18 144.9 8.8 160 155-360 176-341 (468)
60 1qvr_A CLPB protein; coiled co 99.5 6.2E-13 2.1E-17 146.7 16.7 176 156-362 555-775 (854)
61 1iqp_A RFCS; clamp loader, ext 99.5 1.3E-12 4.4E-17 127.0 17.1 157 157-358 23-183 (327)
62 3bos_A Putative DNA replicatio 99.5 1.9E-13 6.5E-18 126.7 10.7 132 194-359 52-189 (242)
63 1sxj_D Activator 1 41 kDa subu 99.4 4.5E-13 1.5E-17 131.9 12.7 161 157-358 35-206 (353)
64 1fnn_A CDC6P, cell division co 99.4 1.3E-12 4.4E-17 130.1 16.0 171 159-359 17-208 (389)
65 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 1.1E-13 3.8E-18 143.2 8.4 158 159-357 22-196 (500)
66 1r6b_X CLPA protein; AAA+, N-t 99.4 2.3E-13 7.8E-18 148.3 10.5 178 154-361 181-366 (758)
67 1in4_A RUVB, holliday junction 99.4 4.5E-12 1.5E-16 124.9 18.8 157 157-359 23-195 (334)
68 2qby_A CDC6 homolog 1, cell di 99.4 6E-13 2E-17 132.0 12.6 176 159-359 20-212 (386)
69 2bjv_A PSP operon transcriptio 99.4 1.5E-12 5.1E-17 123.6 14.7 166 157-362 4-199 (265)
70 3pxi_A Negative regulator of g 99.4 1.1E-13 3.7E-18 150.8 7.2 158 156-359 177-340 (758)
71 1sxj_B Activator 1 37 kDa subu 99.4 3.4E-12 1.2E-16 123.8 16.1 161 157-359 19-181 (323)
72 2chq_A Replication factor C sm 99.4 6E-13 2E-17 128.9 9.9 162 156-359 14-176 (319)
73 1jr3_A DNA polymerase III subu 99.4 3.5E-12 1.2E-16 126.4 14.6 165 157-359 14-193 (373)
74 1sxj_C Activator 1 40 kDa subu 99.4 1.2E-11 4.1E-16 121.8 16.8 156 157-357 23-182 (340)
75 1sxj_E Activator 1 40 kDa subu 99.4 4.5E-12 1.5E-16 125.1 13.1 168 157-359 12-208 (354)
76 3n70_A Transport activator; si 99.3 3.5E-12 1.2E-16 110.3 9.3 135 160-344 2-144 (145)
77 1ojl_A Transcriptional regulat 99.3 1.1E-11 3.9E-16 120.5 14.0 162 160-362 3-195 (304)
78 3co5_A Putative two-component 99.3 1.9E-12 6.5E-17 111.7 6.8 132 160-344 5-142 (143)
79 3f9v_A Minichromosome maintena 99.3 3.4E-13 1.2E-17 142.8 -0.7 167 157-359 293-492 (595)
80 1a5t_A Delta prime, HOLB; zinc 99.2 9.7E-11 3.3E-15 115.3 15.8 141 195-357 25-180 (334)
81 2gno_A DNA polymerase III, gam 99.2 7.8E-11 2.7E-15 114.6 13.2 152 163-357 1-152 (305)
82 1w5s_A Origin recognition comp 99.1 3.1E-10 1E-14 113.8 13.4 184 159-359 22-230 (412)
83 3k1j_A LON protease, ATP-depen 99.1 9.6E-11 3.3E-15 124.4 9.7 49 156-220 38-86 (604)
84 3ec2_A DNA replication protein 99.1 5.9E-11 2E-15 105.9 6.4 110 192-327 36-147 (180)
85 2kjq_A DNAA-related protein; s 99.1 2.1E-10 7.3E-15 99.7 7.9 103 194-337 36-141 (149)
86 3cmw_A Protein RECA, recombina 99.1 5.6E-10 1.9E-14 128.8 12.4 160 153-323 1014-1218(1706)
87 4akg_A Glutathione S-transfera 98.9 8.2E-09 2.8E-13 123.9 15.4 146 194-361 1267-1435(2695)
88 2w58_A DNAI, primosome compone 98.8 1.5E-09 5.2E-14 98.3 3.4 72 195-279 55-127 (202)
89 2vhj_A Ntpase P4, P4; non- hyd 98.7 1.7E-08 5.9E-13 98.0 7.6 119 194-330 123-241 (331)
90 2qen_A Walker-type ATPase; unk 98.7 3.9E-07 1.3E-11 88.7 16.0 161 159-358 12-217 (350)
91 1ye8_A Protein THEP1, hypothet 98.6 1.6E-07 5.3E-12 84.0 11.3 27 196-222 2-28 (178)
92 1ny5_A Transcriptional regulat 98.6 1.7E-06 5.9E-11 86.6 20.2 140 195-362 161-330 (387)
93 3f8t_A Predicted ATPase involv 98.6 2.2E-07 7.4E-12 94.4 11.4 114 196-348 241-385 (506)
94 4akg_A Glutathione S-transfera 98.6 3.3E-07 1.1E-11 110.2 14.8 130 194-353 645-789 (2695)
95 2r2a_A Uncharacterized protein 98.6 5.3E-08 1.8E-12 88.7 5.6 137 195-346 6-155 (199)
96 2qgz_A Helicase loader, putati 98.5 2.7E-08 9.2E-13 96.7 3.5 111 149-279 114-226 (308)
97 3dzd_A Transcriptional regulat 98.5 5.4E-06 1.8E-10 82.4 20.0 138 196-362 154-321 (368)
98 2fna_A Conserved hypothetical 98.5 5E-07 1.7E-11 88.0 12.2 43 159-219 13-55 (357)
99 3rlf_A Maltose/maltodextrin im 98.5 1.1E-07 3.8E-12 94.8 7.1 42 189-237 24-65 (381)
100 1tue_A Replication protein E1; 98.5 3E-07 1E-11 83.7 8.6 26 194-219 58-83 (212)
101 4a74_A DNA repair and recombin 98.5 7.4E-07 2.5E-11 81.6 11.2 132 191-325 22-182 (231)
102 3gfo_A Cobalt import ATP-bindi 98.5 5.8E-07 2E-11 85.9 10.0 42 189-237 29-70 (275)
103 4g1u_C Hemin import ATP-bindin 98.5 2E-08 6.8E-13 95.6 -0.2 31 189-219 32-62 (266)
104 2ehv_A Hypothetical protein PH 98.4 9.4E-07 3.2E-11 82.0 10.3 26 191-216 27-52 (251)
105 1vpl_A ABC transporter, ATP-bi 98.4 1.8E-06 6.2E-11 81.6 12.0 31 189-219 36-66 (256)
106 3fvq_A Fe(3+) IONS import ATP- 98.4 4E-07 1.4E-11 90.1 6.8 31 189-219 25-55 (359)
107 3tif_A Uncharacterized ABC tra 98.4 1.8E-06 6.2E-11 80.5 10.9 31 189-219 26-56 (235)
108 2yyz_A Sugar ABC transporter, 98.4 4E-07 1.4E-11 90.2 6.6 31 189-219 24-54 (359)
109 1z47_A CYSA, putative ABC-tran 98.4 3.6E-07 1.2E-11 90.4 6.1 42 189-237 36-77 (355)
110 3vkg_A Dynein heavy chain, cyt 98.3 1.2E-06 4.1E-11 106.3 11.3 143 194-360 1304-1472(3245)
111 2pcj_A ABC transporter, lipopr 98.3 2E-06 6.7E-11 79.6 10.3 31 189-219 25-55 (224)
112 3nh6_A ATP-binding cassette SU 98.3 3.6E-07 1.2E-11 88.6 5.5 42 189-237 75-116 (306)
113 1g6h_A High-affinity branched- 98.3 1.6E-06 5.5E-11 81.9 9.7 31 189-219 28-58 (257)
114 2olj_A Amino acid ABC transpor 98.3 3E-06 1E-10 80.4 11.1 31 189-219 45-75 (263)
115 1v43_A Sugar-binding transport 98.3 7.5E-07 2.6E-11 88.6 7.3 31 189-219 32-62 (372)
116 3tui_C Methionine import ATP-b 98.3 1.5E-06 5E-11 86.2 9.2 43 189-238 49-91 (366)
117 2it1_A 362AA long hypothetical 98.3 6.5E-07 2.2E-11 88.8 6.5 42 189-237 24-65 (362)
118 3cmu_A Protein RECA, recombina 98.3 1.6E-06 5.4E-11 101.5 10.6 120 191-321 1424-1561(2050)
119 4gp7_A Metallophosphoesterase; 98.3 8.7E-07 3E-11 78.3 6.4 25 189-213 4-28 (171)
120 1g29_1 MALK, maltose transport 98.3 8.9E-07 3E-11 88.2 7.1 31 189-219 24-54 (372)
121 3d31_A Sulfate/molybdate ABC t 98.3 9.5E-07 3.3E-11 87.1 7.1 43 189-238 21-63 (348)
122 2ixe_A Antigen peptide transpo 98.3 6.5E-06 2.2E-10 78.4 12.1 31 189-219 40-70 (271)
123 1sgw_A Putative ABC transporte 98.2 2.5E-06 8.6E-11 78.4 8.8 31 189-219 30-60 (214)
124 2d2e_A SUFC protein; ABC-ATPas 98.2 4.7E-06 1.6E-10 78.3 10.7 29 189-217 24-52 (250)
125 1ji0_A ABC transporter; ATP bi 98.2 2.8E-06 9.6E-11 79.4 9.0 31 189-219 27-57 (240)
126 2qi9_C Vitamin B12 import ATP- 98.2 3.3E-06 1.1E-10 79.4 9.4 31 189-219 21-51 (249)
127 2ihy_A ABC transporter, ATP-bi 98.2 1.5E-06 5.2E-11 83.1 7.1 31 189-219 42-72 (279)
128 1n0w_A DNA repair protein RAD5 98.2 1.1E-05 3.7E-10 74.4 12.4 47 192-238 22-68 (243)
129 3vkg_A Dynein heavy chain, cyt 98.2 7.5E-06 2.6E-10 99.4 13.5 134 194-353 604-749 (3245)
130 2nq2_C Hypothetical ABC transp 98.2 5E-06 1.7E-10 78.4 9.7 31 189-219 26-56 (253)
131 2onk_A Molybdate/tungstate ABC 98.2 3.3E-06 1.1E-10 79.0 8.1 40 189-236 20-59 (240)
132 2cvh_A DNA repair and recombin 98.2 3.6E-06 1.2E-10 76.4 8.2 24 193-216 19-42 (220)
133 1oxx_K GLCV, glucose, ABC tran 98.2 1.6E-06 5.5E-11 85.7 6.2 31 189-219 26-56 (353)
134 1pzn_A RAD51, DNA repair and r 98.1 1.5E-05 5.1E-10 78.7 12.4 132 190-323 127-286 (349)
135 2w0m_A SSO2452; RECA, SSPF, un 98.1 4.6E-06 1.6E-10 76.2 8.0 28 192-219 21-48 (235)
136 3hr8_A Protein RECA; alpha and 98.1 8.6E-06 2.9E-10 80.5 10.1 120 194-322 61-196 (356)
137 2cbz_A Multidrug resistance-as 98.1 6.3E-06 2.1E-10 76.9 8.6 31 189-219 26-56 (237)
138 2ghi_A Transport protein; mult 98.1 2.3E-05 7.9E-10 74.1 12.3 31 189-219 41-71 (260)
139 2z43_A DNA repair and recombin 98.1 2E-05 6.9E-10 76.8 12.1 128 193-323 106-257 (324)
140 1v5w_A DMC1, meiotic recombina 98.1 1.7E-05 6E-10 77.9 11.6 129 193-324 121-274 (343)
141 3lda_A DNA repair protein RAD5 98.0 1.9E-05 6.5E-10 79.3 10.5 128 191-322 175-327 (400)
142 1tf7_A KAIC; homohexamer, hexa 98.0 6.7E-06 2.3E-10 85.6 7.4 28 191-218 36-65 (525)
143 3gd7_A Fusion complex of cysti 98.0 1.4E-05 4.9E-10 79.9 9.4 31 189-219 42-72 (390)
144 3qf4_A ABC transporter, ATP-bi 98.0 6.1E-06 2.1E-10 87.1 6.5 44 189-239 364-407 (587)
145 2zr9_A Protein RECA, recombina 98.0 1.1E-05 3.9E-10 79.5 7.9 81 193-280 60-152 (349)
146 3b5x_A Lipid A export ATP-bind 98.0 7.1E-06 2.4E-10 86.5 6.7 31 189-219 364-394 (582)
147 3qf4_B Uncharacterized ABC tra 98.0 5E-06 1.7E-10 88.0 5.5 43 189-238 376-418 (598)
148 1u0j_A DNA replication protein 97.9 7.9E-05 2.7E-09 70.5 12.7 26 194-219 104-129 (267)
149 1nlf_A Regulatory protein REPA 97.9 4.5E-05 1.5E-09 72.4 10.8 29 191-219 27-55 (279)
150 2eyu_A Twitching motility prot 97.9 3.1E-05 1.1E-09 73.2 9.5 29 192-220 23-51 (261)
151 3b60_A Lipid A export ATP-bind 97.9 8.7E-06 3E-10 85.8 5.9 42 189-237 364-405 (582)
152 4a82_A Cystic fibrosis transme 97.9 5.6E-06 1.9E-10 87.2 4.4 43 189-238 362-404 (578)
153 2pt7_A CAG-ALFA; ATPase, prote 97.9 1E-05 3.4E-10 79.3 5.2 38 194-238 171-208 (330)
154 1cr0_A DNA primase/helicase; R 97.8 3E-05 1E-09 74.2 8.1 30 191-220 32-61 (296)
155 2pjz_A Hypothetical protein ST 97.8 3.7E-05 1.3E-09 72.8 8.5 29 189-218 26-54 (263)
156 2i1q_A DNA repair and recombin 97.8 9.2E-05 3.2E-09 71.8 11.5 127 193-322 97-257 (322)
157 3j16_B RLI1P; ribosome recycli 97.8 2.8E-05 9.4E-10 82.2 8.0 32 191-222 100-131 (608)
158 1yqt_A RNAse L inhibitor; ATP- 97.8 8.3E-05 2.8E-09 77.6 11.3 31 190-220 43-73 (538)
159 2yl4_A ATP-binding cassette SU 97.8 1.3E-05 4.4E-10 84.7 5.2 42 189-237 365-406 (595)
160 2i3b_A HCR-ntpase, human cance 97.8 1.2E-05 4E-10 72.4 3.8 26 194-219 1-26 (189)
161 3cmu_A Protein RECA, recombina 97.8 5.9E-05 2E-09 88.5 10.2 128 191-325 729-870 (2050)
162 3bk7_A ABC transporter ATP-bin 97.8 0.00012 4.1E-09 77.4 11.7 33 190-222 378-410 (607)
163 3ux8_A Excinuclease ABC, A sub 97.8 9.3E-05 3.2E-09 79.2 11.0 23 189-211 39-61 (670)
164 3ozx_A RNAse L inhibitor; ATP 97.8 0.00013 4.6E-09 75.9 11.8 31 191-221 22-52 (538)
165 2ius_A DNA translocase FTSK; n 97.7 0.001 3.5E-08 68.6 18.0 75 269-355 299-375 (512)
166 1yqt_A RNAse L inhibitor; ATP- 97.7 9.3E-05 3.2E-09 77.2 10.2 33 189-221 307-339 (538)
167 2dr3_A UPF0273 protein PH0284; 97.7 8.3E-05 2.8E-09 68.5 8.8 27 192-218 21-47 (247)
168 1xp8_A RECA protein, recombina 97.7 8.1E-05 2.8E-09 73.8 9.0 122 193-323 73-210 (366)
169 3thx_A DNA mismatch repair pro 97.7 0.00013 4.4E-09 80.6 11.5 26 192-217 660-685 (934)
170 3ozx_A RNAse L inhibitor; ATP 97.7 9.8E-05 3.3E-09 77.0 10.0 33 189-221 289-321 (538)
171 3bk7_A ABC transporter ATP-bin 97.7 0.00012 4.1E-09 77.4 10.7 32 190-221 113-144 (607)
172 1jr3_D DNA polymerase III, del 97.7 0.00011 3.9E-09 71.7 9.9 133 195-359 19-157 (343)
173 3thx_B DNA mismatch repair pro 97.7 0.00014 4.8E-09 80.1 11.5 28 191-218 670-697 (918)
174 3ux8_A Excinuclease ABC, A sub 97.7 0.00015 5.1E-09 77.6 11.6 27 189-215 343-369 (670)
175 3vaa_A Shikimate kinase, SK; s 97.7 2.2E-05 7.4E-10 70.7 4.1 33 190-222 21-53 (199)
176 1u94_A RECA protein, recombina 97.7 0.00012 4.2E-09 72.3 9.7 82 193-281 62-155 (356)
177 1zp6_A Hypothetical protein AT 97.7 2E-05 6.8E-10 70.0 3.4 28 191-218 6-33 (191)
178 1b0u_A Histidine permease; ABC 97.6 2.4E-05 8.1E-10 74.1 3.6 42 189-237 27-68 (262)
179 3jvv_A Twitching mobility prot 97.6 0.00013 4.4E-09 72.1 8.9 27 194-220 123-149 (356)
180 2iut_A DNA translocase FTSK; n 97.6 0.0017 5.8E-08 67.7 17.6 75 268-354 344-420 (574)
181 3io5_A Recombination and repai 97.6 9.5E-05 3.3E-09 71.6 7.6 122 194-320 29-168 (333)
182 2ff7_A Alpha-hemolysin translo 97.6 3E-05 1E-09 72.7 3.4 31 189-219 30-60 (247)
183 2obl_A ESCN; ATPase, hydrolase 97.6 0.0009 3.1E-08 65.8 14.0 128 190-324 67-229 (347)
184 1qhx_A CPT, protein (chloramph 97.6 4.1E-05 1.4E-09 67.1 3.9 29 194-222 3-31 (178)
185 1kag_A SKI, shikimate kinase I 97.6 3.8E-05 1.3E-09 67.0 3.7 27 194-220 4-30 (173)
186 3umf_A Adenylate kinase; rossm 97.6 0.00019 6.5E-09 65.9 8.5 32 190-221 25-56 (217)
187 2orw_A Thymidine kinase; TMTK, 97.6 3E-05 1E-09 69.3 2.8 25 194-218 3-27 (184)
188 1mv5_A LMRA, multidrug resista 97.5 3.1E-05 1.1E-09 72.3 3.0 31 189-219 23-53 (243)
189 2yz2_A Putative ABC transporte 97.5 3.7E-05 1.3E-09 72.9 3.5 31 189-219 28-58 (266)
190 1htw_A HI0065; nucleotide-bind 97.5 4.9E-05 1.7E-09 66.3 3.9 28 191-218 30-57 (158)
191 3g5u_A MCG1178, multidrug resi 97.5 5.8E-05 2E-09 86.5 5.4 43 189-238 411-453 (1284)
192 3j16_B RLI1P; ribosome recycli 97.5 0.00028 9.5E-09 74.6 10.0 28 194-221 378-405 (608)
193 4eun_A Thermoresistant glucoki 97.5 8.4E-05 2.9E-09 66.8 5.3 27 194-220 29-55 (200)
194 2yhs_A FTSY, cell division pro 97.5 0.00014 4.7E-09 74.6 7.4 31 189-219 288-318 (503)
195 2pze_A Cystic fibrosis transme 97.5 4.8E-05 1.7E-09 70.4 3.6 31 189-219 29-59 (229)
196 3trf_A Shikimate kinase, SK; a 97.5 5.9E-05 2E-09 66.6 4.0 29 194-222 5-33 (185)
197 3b9q_A Chloroplast SRP recepto 97.5 0.00013 4.5E-09 70.4 6.7 43 190-239 96-138 (302)
198 1wb9_A DNA mismatch repair pro 97.5 0.00052 1.8E-08 74.7 11.8 26 193-218 606-631 (800)
199 4aby_A DNA repair protein RECN 97.5 0.00054 1.8E-08 68.6 11.1 29 190-219 57-85 (415)
200 3kb2_A SPBC2 prophage-derived 97.4 7.3E-05 2.5E-09 64.9 3.8 27 196-222 3-29 (173)
201 1knq_A Gluconate kinase; ALFA/ 97.4 0.00012 4.1E-09 64.0 5.2 27 194-220 8-34 (175)
202 3tr0_A Guanylate kinase, GMP k 97.4 8E-05 2.7E-09 66.7 4.0 27 192-218 5-31 (205)
203 4f4c_A Multidrug resistance pr 97.4 1.7E-05 5.8E-10 91.1 -1.0 44 189-239 1100-1143(1321)
204 1znw_A Guanylate kinase, GMP k 97.4 8.7E-05 3E-09 67.2 3.9 30 190-219 16-45 (207)
205 3cmw_A Protein RECA, recombina 97.4 0.00022 7.5E-09 82.8 7.9 83 191-280 729-823 (1706)
206 1y63_A LMAJ004144AAA protein; 97.4 0.00011 3.7E-09 65.3 4.2 29 193-221 9-38 (184)
207 2rhm_A Putative kinase; P-loop 97.4 0.0001 3.4E-09 65.4 4.0 29 193-221 4-32 (193)
208 2og2_A Putative signal recogni 97.4 0.0002 6.8E-09 70.8 6.4 43 190-239 153-195 (359)
209 2dpy_A FLII, flagellum-specifi 97.4 0.00063 2.2E-08 69.0 10.2 41 190-237 153-193 (438)
210 2p5t_B PEZT; postsegregational 97.4 0.00023 8E-09 66.5 6.5 28 192-219 30-57 (253)
211 3iij_A Coilin-interacting nucl 97.4 0.0001 3.4E-09 64.9 3.8 28 194-221 11-38 (180)
212 2o8b_B DNA mismatch repair pro 97.4 0.00093 3.2E-08 74.6 12.3 24 194-218 789-812 (1022)
213 2b8t_A Thymidine kinase; deoxy 97.4 0.00022 7.5E-09 65.7 6.1 26 194-219 12-37 (223)
214 4f4c_A Multidrug resistance pr 97.4 7.4E-05 2.5E-09 85.8 3.6 43 189-238 439-481 (1321)
215 1ewq_A DNA mismatch repair pro 97.4 0.00044 1.5E-08 74.9 9.4 25 194-218 576-600 (765)
216 3cm0_A Adenylate kinase; ATP-b 97.4 9.6E-05 3.3E-09 65.2 3.5 28 194-221 4-31 (186)
217 3ice_A Transcription terminati 97.4 0.0014 4.9E-08 65.0 12.2 130 190-324 170-325 (422)
218 2zu0_C Probable ATP-dependent 97.4 7.8E-05 2.7E-09 70.7 3.1 30 189-218 41-70 (267)
219 1via_A Shikimate kinase; struc 97.3 9.5E-05 3.2E-09 64.8 3.4 27 196-222 6-32 (175)
220 1z6g_A Guanylate kinase; struc 97.3 9.6E-05 3.3E-09 67.7 3.4 30 189-218 18-47 (218)
221 2j41_A Guanylate kinase; GMP, 97.3 0.0001 3.6E-09 66.0 3.5 28 191-218 3-30 (207)
222 1kht_A Adenylate kinase; phosp 97.3 0.00012 4.2E-09 64.6 3.8 26 194-219 3-28 (192)
223 3uie_A Adenylyl-sulfate kinase 97.3 0.00013 4.4E-09 65.7 4.0 26 194-219 25-50 (200)
224 1z6t_A APAF-1, apoptotic prote 97.3 0.00094 3.2E-08 69.9 10.7 47 159-217 124-170 (591)
225 3g5u_A MCG1178, multidrug resi 97.3 4.9E-05 1.7E-09 87.1 0.9 31 189-219 1054-1084(1284)
226 2iyv_A Shikimate kinase, SK; t 97.3 0.00013 4.3E-09 64.4 3.4 28 195-222 3-30 (184)
227 1tev_A UMP-CMP kinase; ploop, 97.3 0.00015 5.3E-09 64.0 3.9 27 194-220 3-29 (196)
228 1gvn_B Zeta; postsegregational 97.3 0.00041 1.4E-08 66.3 7.2 26 193-218 32-57 (287)
229 2c95_A Adenylate kinase 1; tra 97.3 0.00015 5.3E-09 64.3 3.9 28 194-221 9-36 (196)
230 1zuh_A Shikimate kinase; alpha 97.3 0.00016 5.5E-09 62.8 3.9 28 195-222 8-35 (168)
231 2cdn_A Adenylate kinase; phosp 97.3 0.00018 6.2E-09 64.5 4.2 28 194-221 20-47 (201)
232 2vli_A Antibiotic resistance p 97.2 0.00012 4.2E-09 64.2 3.0 29 194-222 5-33 (183)
233 3t61_A Gluconokinase; PSI-biol 97.2 0.00016 5.3E-09 65.0 3.7 26 195-220 19-44 (202)
234 3crm_A TRNA delta(2)-isopenten 97.2 0.00042 1.4E-08 67.3 6.9 28 194-221 5-32 (323)
235 1kgd_A CASK, peripheral plasma 97.2 0.00017 5.9E-09 63.7 3.9 26 194-219 5-30 (180)
236 2bbs_A Cystic fibrosis transme 97.2 9.8E-05 3.4E-09 70.9 2.4 31 189-219 59-89 (290)
237 2jeo_A Uridine-cytidine kinase 97.2 0.00017 5.9E-09 67.0 4.0 33 189-221 20-52 (245)
238 1ly1_A Polynucleotide kinase; 97.2 0.00016 5.4E-09 63.2 3.4 25 195-219 3-28 (181)
239 1aky_A Adenylate kinase; ATP:A 97.2 0.0002 6.7E-09 65.3 4.1 28 194-221 4-31 (220)
240 3a00_A Guanylate kinase, GMP k 97.2 0.00016 5.3E-09 64.3 3.2 26 194-219 1-26 (186)
241 2a5y_B CED-4; apoptosis; HET: 97.2 0.0069 2.4E-07 63.0 16.3 44 162-216 131-174 (549)
242 1tf7_A KAIC; homohexamer, hexa 97.2 0.00088 3E-08 69.5 9.4 29 191-219 278-306 (525)
243 3lw7_A Adenylate kinase relate 97.2 0.00019 6.5E-09 62.0 3.7 26 195-221 2-27 (179)
244 3c8u_A Fructokinase; YP_612366 97.2 0.00019 6.4E-09 65.0 3.8 27 193-219 21-47 (208)
245 2bwj_A Adenylate kinase 5; pho 97.2 0.00019 6.6E-09 63.8 3.7 27 194-220 12-38 (199)
246 3tau_A Guanylate kinase, GMP k 97.2 0.00019 6.4E-09 65.1 3.6 27 193-219 7-33 (208)
247 2r6a_A DNAB helicase, replicat 97.2 0.00087 3E-08 68.2 9.0 30 191-220 200-229 (454)
248 3sr0_A Adenylate kinase; phosp 97.2 0.00019 6.6E-09 65.3 3.6 34 196-240 2-35 (206)
249 3a4m_A L-seryl-tRNA(SEC) kinas 97.2 0.00051 1.7E-08 64.5 6.7 25 194-218 4-28 (260)
250 2bbw_A Adenylate kinase 4, AK4 97.2 0.00021 7.1E-09 66.4 3.9 27 194-220 27-53 (246)
251 1e6c_A Shikimate kinase; phosp 97.2 0.0002 6.7E-09 62.3 3.4 28 195-222 3-30 (173)
252 3lnc_A Guanylate kinase, GMP k 97.2 0.00014 4.7E-09 66.9 2.5 30 189-218 22-52 (231)
253 2v9p_A Replication protein E1; 97.2 0.00022 7.5E-09 68.9 3.9 29 190-218 122-150 (305)
254 3nwj_A ATSK2; P loop, shikimat 97.2 0.00016 5.5E-09 67.9 2.8 29 194-222 48-76 (250)
255 1qf9_A UMP/CMP kinase, protein 97.1 0.00024 8.4E-09 62.6 3.9 27 194-220 6-32 (194)
256 1zd8_A GTP:AMP phosphotransfer 97.1 0.00022 7.5E-09 65.4 3.7 28 194-221 7-34 (227)
257 1ukz_A Uridylate kinase; trans 97.1 0.0003 1E-08 63.0 4.5 28 193-220 14-41 (203)
258 2ze6_A Isopentenyl transferase 97.1 0.00025 8.5E-09 66.5 4.1 26 196-221 3-28 (253)
259 2vf7_A UVRA2, excinuclease ABC 97.1 0.001 3.4E-08 72.7 9.3 30 189-218 518-548 (842)
260 1cke_A CK, MSSA, protein (cyti 97.1 0.00025 8.5E-09 64.6 3.9 28 194-221 5-32 (227)
261 2bdt_A BH3686; alpha-beta prot 97.1 0.0002 6.8E-09 63.5 3.2 25 194-218 2-26 (189)
262 1lvg_A Guanylate kinase, GMP k 97.1 0.00021 7E-09 64.4 3.3 27 193-219 3-29 (198)
263 2plr_A DTMP kinase, probable t 97.1 0.00026 8.9E-09 63.5 4.0 27 194-220 4-30 (213)
264 3asz_A Uridine kinase; cytidin 97.1 0.00025 8.6E-09 63.9 3.8 27 193-219 5-31 (211)
265 1nks_A Adenylate kinase; therm 97.1 0.00022 7.7E-09 62.9 3.4 24 196-219 3-26 (194)
266 1zak_A Adenylate kinase; ATP:A 97.1 0.00024 8E-09 64.9 3.4 28 194-221 5-32 (222)
267 2if2_A Dephospho-COA kinase; a 97.1 0.00034 1.2E-08 62.7 4.5 24 196-220 3-26 (204)
268 2qor_A Guanylate kinase; phosp 97.1 0.00025 8.6E-09 63.9 3.6 27 193-219 11-37 (204)
269 3e70_C DPA, signal recognition 97.1 0.00056 1.9E-08 66.7 6.2 42 192-240 127-168 (328)
270 2pez_A Bifunctional 3'-phospho 97.1 0.0004 1.4E-08 61.0 4.7 25 194-218 5-29 (179)
271 3pih_A Uvrabc system protein A 97.1 0.0028 9.4E-08 69.8 12.2 23 189-211 605-627 (916)
272 1s96_A Guanylate kinase, GMP k 97.1 0.0003 1E-08 64.6 3.9 28 192-219 14-41 (219)
273 2px0_A Flagellar biosynthesis 97.1 0.00073 2.5E-08 64.9 6.6 27 193-219 104-130 (296)
274 1svm_A Large T antigen; AAA+ f 97.1 0.0003 1E-08 69.9 4.0 29 191-219 166-194 (377)
275 2zts_A Putative uncharacterize 97.1 0.0023 7.9E-08 58.6 9.8 25 193-217 29-53 (251)
276 1ak2_A Adenylate kinase isoenz 97.1 0.00036 1.2E-08 64.3 4.2 28 194-221 16-43 (233)
277 3fb4_A Adenylate kinase; psych 97.1 0.00032 1.1E-08 63.5 3.8 26 196-221 2-27 (216)
278 3dl0_A Adenylate kinase; phosp 97.1 0.00031 1.1E-08 63.6 3.7 26 196-221 2-27 (216)
279 3be4_A Adenylate kinase; malar 97.0 0.00033 1.1E-08 63.8 3.8 28 194-221 5-32 (217)
280 1rj9_A FTSY, signal recognitio 97.0 0.00044 1.5E-08 66.8 4.9 41 193-240 101-141 (304)
281 2pt5_A Shikimate kinase, SK; a 97.0 0.00036 1.2E-08 60.4 3.9 27 196-222 2-28 (168)
282 2wwf_A Thymidilate kinase, put 97.0 0.00032 1.1E-08 63.1 3.7 29 193-221 9-37 (212)
283 3tlx_A Adenylate kinase 2; str 97.0 0.00037 1.3E-08 64.8 4.2 28 194-221 29-56 (243)
284 3bh0_A DNAB-like replicative h 97.0 0.0026 8.8E-08 61.5 10.3 26 194-219 68-93 (315)
285 4e22_A Cytidylate kinase; P-lo 97.0 0.00037 1.3E-08 65.2 4.1 28 194-221 27-54 (252)
286 2c9o_A RUVB-like 1; hexameric 97.0 0.0012 4E-08 67.3 8.2 74 268-359 296-381 (456)
287 1g5t_A COB(I)alamin adenosyltr 97.0 0.0036 1.2E-07 56.2 10.3 125 195-343 29-179 (196)
288 1jjv_A Dephospho-COA kinase; P 97.0 0.00037 1.3E-08 62.7 3.7 26 195-221 3-28 (206)
289 1sky_E F1-ATPase, F1-ATP synth 97.0 0.0024 8.1E-08 65.0 10.0 28 193-220 150-177 (473)
290 2jaq_A Deoxyguanosine kinase; 97.0 0.00039 1.3E-08 61.9 3.9 27 196-222 2-28 (205)
291 2v54_A DTMP kinase, thymidylat 97.0 0.00045 1.5E-08 61.7 4.0 25 194-218 4-28 (204)
292 1nn5_A Similar to deoxythymidy 97.0 0.00041 1.4E-08 62.4 3.7 28 194-221 9-36 (215)
293 2yvu_A Probable adenylyl-sulfa 97.0 0.0005 1.7E-08 60.8 4.1 28 193-220 12-39 (186)
294 3b85_A Phosphate starvation-in 97.0 0.00027 9.3E-09 64.4 2.4 27 194-221 22-48 (208)
295 2q6t_A DNAB replication FORK h 97.0 0.0013 4.4E-08 66.8 7.6 27 193-219 199-225 (444)
296 2qt1_A Nicotinamide riboside k 96.9 0.00037 1.3E-08 62.8 3.1 29 190-218 17-45 (207)
297 1m7g_A Adenylylsulfate kinase; 96.9 0.00052 1.8E-08 62.1 4.0 26 194-219 25-50 (211)
298 3aez_A Pantothenate kinase; tr 96.9 0.00052 1.8E-08 66.5 4.2 30 191-220 87-116 (312)
299 2gza_A Type IV secretion syste 96.9 0.00035 1.2E-08 69.1 3.0 38 192-236 173-210 (361)
300 3llm_A ATP-dependent RNA helic 96.9 0.0022 7.4E-08 59.0 8.1 24 193-216 75-98 (235)
301 1uj2_A Uridine-cytidine kinase 96.9 0.0011 3.8E-08 61.7 5.9 47 194-241 22-68 (252)
302 2ga8_A Hypothetical 39.9 kDa p 96.9 0.00081 2.8E-08 66.1 4.9 27 196-222 26-52 (359)
303 1e4v_A Adenylate kinase; trans 96.9 0.00056 1.9E-08 62.0 3.5 26 196-221 2-27 (214)
304 3ney_A 55 kDa erythrocyte memb 96.9 0.00065 2.2E-08 61.3 3.9 27 193-219 18-44 (197)
305 3foz_A TRNA delta(2)-isopenten 96.8 0.001 3.4E-08 64.2 5.4 27 194-220 10-36 (316)
306 2gxq_A Heat resistant RNA depe 96.8 0.0063 2.2E-07 54.1 10.5 25 194-218 38-63 (207)
307 2xb4_A Adenylate kinase; ATP-b 96.8 0.00065 2.2E-08 62.2 3.8 25 196-220 2-26 (223)
308 3r20_A Cytidylate kinase; stru 96.8 0.0007 2.4E-08 62.7 4.0 28 194-221 9-36 (233)
309 2pbr_A DTMP kinase, thymidylat 96.8 0.0007 2.4E-08 59.7 3.8 23 196-218 2-24 (195)
310 3e1s_A Exodeoxyribonuclease V, 96.8 0.00042 1.4E-08 72.8 2.6 26 194-219 204-229 (574)
311 3sfz_A APAF-1, apoptotic pepti 96.8 0.0067 2.3E-07 68.5 12.7 48 159-218 124-171 (1249)
312 2oap_1 GSPE-2, type II secreti 96.8 0.00053 1.8E-08 71.0 3.1 38 194-238 260-297 (511)
313 2z0h_A DTMP kinase, thymidylat 96.8 0.00078 2.7E-08 59.7 3.7 23 196-218 2-24 (197)
314 3ake_A Cytidylate kinase; CMP 96.8 0.00079 2.7E-08 60.2 3.7 27 196-222 4-30 (208)
315 1rz3_A Hypothetical protein rb 96.7 0.00089 3E-08 60.2 3.9 26 194-219 22-47 (201)
316 3szr_A Interferon-induced GTP- 96.7 0.0085 2.9E-07 63.3 11.9 22 197-218 48-69 (608)
317 1q3t_A Cytidylate kinase; nucl 96.7 0.00099 3.4E-08 61.4 4.1 29 193-221 15-43 (236)
318 3dm5_A SRP54, signal recogniti 96.7 0.019 6.4E-07 58.1 13.8 26 194-219 100-125 (443)
319 2npi_A Protein CLP1; CLP1-PCF1 96.7 0.00051 1.7E-08 70.2 2.2 29 191-219 135-163 (460)
320 1lw7_A Transcriptional regulat 96.7 0.00098 3.4E-08 65.8 4.2 35 187-221 161-197 (365)
321 2grj_A Dephospho-COA kinase; T 96.7 0.00093 3.2E-08 60.0 3.7 27 195-221 13-39 (192)
322 2r6f_A Excinuclease ABC subuni 96.7 0.0075 2.5E-07 66.4 11.4 27 189-215 645-671 (972)
323 3kw6_A 26S protease regulatory 96.7 0.0012 4.2E-08 50.0 3.7 48 342-398 1-48 (78)
324 2ygr_A Uvrabc system protein A 96.7 0.0077 2.6E-07 66.5 11.4 27 189-215 663-689 (993)
325 3gmt_A Adenylate kinase; ssgci 96.7 0.0028 9.7E-08 58.5 6.8 28 195-222 9-36 (230)
326 1g41_A Heat shock protein HSLU 96.7 0.012 4.1E-07 59.6 11.9 83 268-354 251-346 (444)
327 3kta_A Chromosome segregation 96.7 0.0011 3.7E-08 58.2 3.8 24 196-219 28-51 (182)
328 1w4r_A Thymidine kinase; type 96.6 0.0022 7.4E-08 57.7 5.7 25 194-218 20-45 (195)
329 4eaq_A DTMP kinase, thymidylat 96.6 0.0012 4.1E-08 60.9 4.2 28 192-219 24-51 (229)
330 1vht_A Dephospho-COA kinase; s 96.6 0.0012 4E-08 59.9 4.0 26 194-220 4-29 (218)
331 3a8t_A Adenylate isopentenyltr 96.6 0.0011 3.8E-08 64.7 3.9 27 194-220 40-66 (339)
332 1uf9_A TT1252 protein; P-loop, 96.6 0.0011 3.7E-08 59.0 3.6 27 194-221 8-34 (203)
333 3kl4_A SRP54, signal recogniti 96.6 0.0058 2E-07 61.7 9.1 28 193-220 96-123 (433)
334 1qde_A EIF4A, translation init 96.6 0.0085 2.9E-07 54.1 9.4 25 194-218 51-76 (224)
335 2ewv_A Twitching motility prot 96.6 0.0012 4.1E-08 65.5 4.0 28 193-220 135-162 (372)
336 4a1f_A DNAB helicase, replicat 96.6 0.0053 1.8E-07 60.0 8.5 27 193-219 45-71 (338)
337 1sq5_A Pantothenate kinase; P- 96.6 0.0012 4.2E-08 63.6 3.9 27 193-219 79-105 (308)
338 1ex7_A Guanylate kinase; subst 96.6 0.0012 4E-08 59.1 3.5 25 195-219 2-26 (186)
339 2qm8_A GTPase/ATPase; G protei 96.6 0.0014 4.7E-08 64.1 4.3 30 190-219 51-80 (337)
340 3sop_A Neuronal-specific septi 96.6 0.0012 4E-08 62.6 3.5 25 196-220 4-28 (270)
341 3euj_A Chromosome partition pr 96.5 0.001 3.5E-08 68.2 2.9 31 189-220 25-55 (483)
342 4i1u_A Dephospho-COA kinase; s 96.5 0.0091 3.1E-07 54.3 9.0 27 195-222 10-36 (210)
343 3l0o_A Transcription terminati 96.5 0.038 1.3E-06 54.8 13.9 128 191-323 172-325 (427)
344 1p9r_A General secretion pathw 96.5 0.0022 7.4E-08 64.6 5.1 27 194-220 167-193 (418)
345 1q57_A DNA primase/helicase; d 96.5 0.0044 1.5E-07 63.8 7.5 30 191-220 239-268 (503)
346 1xx6_A Thymidine kinase; NESG, 96.5 0.0051 1.7E-07 55.1 6.9 25 194-218 8-32 (191)
347 1vt4_I APAF-1 related killer D 96.5 0.018 6.2E-07 64.0 12.5 43 162-217 131-173 (1221)
348 2krk_A 26S protease regulatory 96.5 0.0016 5.6E-08 50.5 3.2 49 341-398 8-56 (86)
349 3exa_A TRNA delta(2)-isopenten 96.4 0.0019 6.6E-08 62.4 4.2 27 194-220 3-29 (322)
350 1vma_A Cell division protein F 96.4 0.003 1E-07 61.0 5.6 29 191-219 101-129 (306)
351 1zu4_A FTSY; GTPase, signal re 96.4 0.0039 1.3E-07 60.5 6.5 31 190-220 101-131 (320)
352 1odf_A YGR205W, hypothetical 3 96.4 0.005 1.7E-07 58.9 7.0 27 194-220 31-57 (290)
353 2h92_A Cytidylate kinase; ross 96.4 0.0017 6E-08 58.7 3.6 28 195-222 4-31 (219)
354 1ltq_A Polynucleotide kinase; 96.4 0.0019 6.5E-08 61.5 3.9 24 195-218 3-26 (301)
355 2fz4_A DNA repair protein RAD2 96.4 0.0034 1.1E-07 58.0 5.4 25 195-219 109-133 (237)
356 1gtv_A TMK, thymidylate kinase 96.4 0.00095 3.3E-08 60.0 1.6 25 196-220 2-26 (214)
357 3bgw_A DNAB-like replicative h 96.3 0.007 2.4E-07 61.4 8.0 29 192-220 195-223 (444)
358 1c9k_A COBU, adenosylcobinamid 96.3 0.0073 2.5E-07 53.6 7.1 21 197-217 2-22 (180)
359 3tqc_A Pantothenate kinase; bi 96.3 0.0023 8E-08 62.1 4.1 26 194-219 92-117 (321)
360 3eph_A TRNA isopentenyltransfe 96.3 0.004 1.4E-07 62.1 5.8 25 195-219 3-27 (409)
361 2f1r_A Molybdopterin-guanine d 96.3 0.0012 4.3E-08 58.0 1.7 41 195-239 3-43 (171)
362 3zvl_A Bifunctional polynucleo 96.3 0.0019 6.5E-08 65.0 3.2 28 193-220 257-284 (416)
363 2qmh_A HPR kinase/phosphorylas 96.2 0.0021 7E-08 58.0 2.9 26 194-219 34-59 (205)
364 3d3q_A TRNA delta(2)-isopenten 96.2 0.0032 1.1E-07 61.5 4.4 26 195-220 8-33 (340)
365 3cr8_A Sulfate adenylyltranfer 96.2 0.002 7E-08 67.1 3.1 29 191-219 366-394 (552)
366 2f6r_A COA synthase, bifunctio 96.1 0.0031 1.1E-07 59.9 3.7 26 194-220 75-100 (281)
367 3dkp_A Probable ATP-dependent 96.1 0.056 1.9E-06 49.4 12.2 18 194-211 66-83 (245)
368 2xau_A PRE-mRNA-splicing facto 96.1 0.0062 2.1E-07 66.1 6.3 25 194-218 109-133 (773)
369 1x6v_B Bifunctional 3'-phospho 96.0 0.011 3.7E-07 62.5 7.7 25 194-218 52-76 (630)
370 1t6n_A Probable ATP-dependent 96.0 0.055 1.9E-06 48.5 11.6 23 194-216 51-73 (220)
371 2iw3_A Elongation factor 3A; a 96.0 0.0023 7.8E-08 70.8 2.5 40 189-235 694-733 (986)
372 2qag_B Septin-6, protein NEDD5 96.0 0.0026 8.8E-08 64.1 2.7 28 191-218 37-66 (427)
373 3fdi_A Uncharacterized protein 96.0 0.0041 1.4E-07 56.1 3.8 28 195-222 7-34 (201)
374 1hv8_A Putative ATP-dependent 96.0 0.0027 9.1E-08 61.4 2.7 23 195-217 45-67 (367)
375 2vp4_A Deoxynucleoside kinase; 96.0 0.0024 8.1E-08 58.6 2.1 28 190-217 16-43 (230)
376 3b6e_A Interferon-induced heli 95.9 0.014 4.7E-07 52.0 7.1 24 195-218 49-72 (216)
377 1np6_A Molybdopterin-guanine d 95.9 0.0053 1.8E-07 54.1 3.8 25 195-219 7-31 (174)
378 1pui_A ENGB, probable GTP-bind 95.8 0.0019 6.5E-08 57.7 0.7 30 189-218 21-50 (210)
379 1f2t_A RAD50 ABC-ATPase; DNA d 95.8 0.0058 2E-07 52.3 3.8 24 195-218 24-47 (149)
380 1a7j_A Phosphoribulokinase; tr 95.8 0.003 1E-07 60.4 2.1 26 194-219 5-30 (290)
381 1qhl_A Protein (cell division 95.8 0.0015 5E-08 60.4 -0.1 23 197-219 30-52 (227)
382 3bor_A Human initiation factor 95.8 0.036 1.2E-06 50.7 9.4 18 194-211 67-84 (237)
383 1xjc_A MOBB protein homolog; s 95.8 0.0058 2E-07 53.7 3.7 25 195-219 5-29 (169)
384 3tqf_A HPR(Ser) kinase; transf 95.8 0.0051 1.7E-07 54.2 3.3 25 193-217 15-39 (181)
385 1zd9_A ADP-ribosylation factor 95.8 0.059 2E-06 46.9 10.4 24 195-218 23-46 (188)
386 1vec_A ATP-dependent RNA helic 95.8 0.043 1.5E-06 48.6 9.6 19 194-212 40-58 (206)
387 2ocp_A DGK, deoxyguanosine kin 95.7 0.0056 1.9E-07 56.4 3.6 26 194-219 2-27 (241)
388 4edh_A DTMP kinase, thymidylat 95.7 0.0064 2.2E-07 55.4 3.9 27 194-220 6-32 (213)
389 2f9l_A RAB11B, member RAS onco 95.7 0.0061 2.1E-07 54.1 3.4 23 196-218 7-29 (199)
390 1tq4_A IIGP1, interferon-induc 95.7 0.0035 1.2E-07 63.0 2.1 26 194-219 69-94 (413)
391 1oix_A RAS-related protein RAB 95.7 0.0059 2E-07 54.0 3.3 24 195-218 30-53 (191)
392 3v9p_A DTMP kinase, thymidylat 95.6 0.0058 2E-07 56.3 3.3 29 193-221 24-52 (227)
393 3fe2_A Probable ATP-dependent 95.6 0.079 2.7E-06 48.4 11.1 18 194-211 66-83 (242)
394 3ber_A Probable ATP-dependent 95.6 0.084 2.9E-06 48.7 11.3 18 194-211 80-97 (249)
395 2iw3_A Elongation factor 3A; a 95.6 0.0054 1.8E-07 67.8 3.4 28 189-216 456-483 (986)
396 1u0l_A Probable GTPase ENGC; p 95.6 0.0035 1.2E-07 60.1 1.8 28 192-219 167-194 (301)
397 3pey_A ATP-dependent RNA helic 95.6 0.068 2.3E-06 51.9 11.1 19 195-213 45-63 (395)
398 3fmo_B ATP-dependent RNA helic 95.6 0.063 2.1E-06 51.2 10.5 18 194-211 131-148 (300)
399 1z0f_A RAB14, member RAS oncog 95.6 0.066 2.2E-06 45.6 9.7 24 195-218 16-39 (179)
400 3dz8_A RAS-related protein RAB 95.6 0.1 3.6E-06 45.4 11.2 24 195-218 24-47 (191)
401 2axn_A 6-phosphofructo-2-kinas 95.6 0.007 2.4E-07 62.7 3.9 28 194-221 35-62 (520)
402 4b3f_X DNA-binding protein smu 95.6 0.011 3.7E-07 62.8 5.4 23 195-217 206-228 (646)
403 2pl3_A Probable ATP-dependent 95.5 0.2 6.9E-06 45.3 13.4 19 194-212 62-80 (236)
404 3tmk_A Thymidylate kinase; pho 95.5 0.0084 2.9E-07 54.8 3.9 27 194-220 5-31 (216)
405 3iuy_A Probable ATP-dependent 95.5 0.043 1.5E-06 49.6 8.7 19 194-212 57-75 (228)
406 1q0u_A Bstdead; DEAD protein, 95.5 0.086 2.9E-06 47.3 10.7 18 194-211 41-58 (219)
407 3lv8_A DTMP kinase, thymidylat 95.5 0.0083 2.8E-07 55.6 3.7 27 194-220 27-53 (236)
408 3hdt_A Putative kinase; struct 95.4 0.0091 3.1E-07 54.8 3.8 29 194-222 14-42 (223)
409 2j9r_A Thymidine kinase; TK1, 95.4 0.017 5.8E-07 52.6 5.4 27 193-219 27-53 (214)
410 3upu_A ATP-dependent DNA helic 95.4 0.0095 3.2E-07 60.5 4.1 24 196-219 47-70 (459)
411 2ged_A SR-beta, signal recogni 95.4 0.013 4.5E-07 51.2 4.5 25 194-218 48-72 (193)
412 2rcn_A Probable GTPase ENGC; Y 95.4 0.0064 2.2E-07 59.9 2.6 26 194-219 215-240 (358)
413 1p5z_B DCK, deoxycytidine kina 95.4 0.0042 1.4E-07 58.1 1.2 25 194-218 24-48 (263)
414 3qf7_A RAD50; ABC-ATPase, ATPa 95.3 0.0088 3E-07 59.0 3.5 23 196-218 25-47 (365)
415 4tmk_A Protein (thymidylate ki 95.3 0.011 3.7E-07 53.9 3.8 27 194-220 3-29 (213)
416 1s2m_A Putative ATP-dependent 95.3 0.13 4.3E-06 50.4 11.9 21 194-214 58-78 (400)
417 3ld9_A DTMP kinase, thymidylat 95.3 0.012 4.1E-07 54.0 4.0 27 194-220 21-47 (223)
418 1ni3_A YCHF GTPase, YCHF GTP-b 95.3 0.018 6.3E-07 57.3 5.6 46 191-236 17-67 (392)
419 1t9h_A YLOQ, probable GTPase E 95.3 0.0032 1.1E-07 60.8 0.0 30 190-219 169-198 (307)
420 1g8f_A Sulfate adenylyltransfe 95.3 0.0096 3.3E-07 61.4 3.6 27 194-220 395-421 (511)
421 3qks_A DNA double-strand break 95.2 0.012 4E-07 53.1 3.8 25 195-219 24-48 (203)
422 3ly5_A ATP-dependent RNA helic 95.2 0.053 1.8E-06 50.5 8.3 19 194-212 91-109 (262)
423 2yv5_A YJEQ protein; hydrolase 95.2 0.009 3.1E-07 57.3 3.0 26 193-219 164-189 (302)
424 1ls1_A Signal recognition part 95.1 0.013 4.4E-07 56.1 4.0 27 193-219 97-123 (295)
425 1w1w_A Structural maintenance 95.1 0.012 4.2E-07 59.1 4.0 28 193-220 25-52 (430)
426 2o5v_A DNA replication and rep 95.1 0.011 3.8E-07 58.2 3.5 23 196-218 28-50 (359)
427 2dyk_A GTP-binding protein; GT 95.1 0.013 4.4E-07 49.4 3.5 23 196-218 3-25 (161)
428 1xti_A Probable ATP-dependent 95.1 0.1 3.4E-06 50.8 10.3 22 194-215 45-66 (391)
429 2p67_A LAO/AO transport system 95.0 0.014 4.9E-07 56.8 4.0 28 192-219 54-81 (341)
430 2wji_A Ferrous iron transport 95.0 0.011 3.6E-07 50.8 2.7 23 195-217 4-26 (165)
431 1bif_A 6-phosphofructo-2-kinas 95.0 0.013 4.5E-07 59.7 3.8 28 194-221 39-66 (469)
432 2gj8_A MNME, tRNA modification 95.0 0.012 4E-07 51.0 2.8 25 194-218 4-28 (172)
433 2www_A Methylmalonic aciduria 94.9 0.016 5.5E-07 56.7 4.1 25 194-218 74-98 (349)
434 3eiq_A Eukaryotic initiation f 94.9 0.11 3.9E-06 50.8 10.3 18 194-211 77-94 (414)
435 1z2a_A RAS-related protein RAB 94.9 0.015 5.3E-07 49.1 3.4 23 196-218 7-29 (168)
436 1m8p_A Sulfate adenylyltransfe 94.9 0.015 5E-07 61.0 3.9 26 194-219 396-421 (573)
437 3fht_A ATP-dependent RNA helic 94.9 0.016 5.4E-07 57.0 3.9 18 194-211 64-81 (412)
438 2ffh_A Protein (FFH); SRP54, s 94.9 0.03 1E-06 56.4 5.9 28 193-220 97-124 (425)
439 2qe7_A ATP synthase subunit al 94.8 0.091 3.1E-06 53.6 9.4 29 191-219 159-188 (502)
440 1kao_A RAP2A; GTP-binding prot 94.8 0.017 5.9E-07 48.6 3.5 23 196-218 5-27 (167)
441 2zej_A Dardarin, leucine-rich 94.8 0.01 3.4E-07 51.9 2.0 22 196-217 4-25 (184)
442 2oxc_A Probable ATP-dependent 94.8 0.2 6.8E-06 45.3 10.9 18 194-211 61-78 (230)
443 2r9v_A ATP synthase subunit al 94.8 0.08 2.7E-06 54.2 8.8 29 191-219 172-201 (515)
444 2ce2_X GTPase HRAS; signaling 94.8 0.016 5.6E-07 48.6 3.2 23 196-218 5-27 (166)
445 1nrj_B SR-beta, signal recogni 94.7 0.02 6.8E-07 51.2 3.8 24 195-218 13-36 (218)
446 2j0s_A ATP-dependent RNA helic 94.7 0.14 4.8E-06 50.3 10.4 20 194-213 74-93 (410)
447 2wjg_A FEOB, ferrous iron tran 94.7 0.015 5.1E-07 50.5 2.9 23 195-217 8-30 (188)
448 1u8z_A RAS-related protein RAL 94.7 0.019 6.4E-07 48.4 3.4 24 195-218 5-28 (168)
449 1j8m_F SRP54, signal recogniti 94.7 0.017 5.8E-07 55.3 3.4 26 194-219 98-123 (297)
450 1z0j_A RAB-22, RAS-related pro 94.7 0.02 6.7E-07 48.6 3.5 23 196-218 8-30 (170)
451 1ek0_A Protein (GTP-binding pr 94.6 0.02 6.7E-07 48.5 3.4 23 196-218 5-27 (170)
452 3fmp_B ATP-dependent RNA helic 94.6 0.12 4.1E-06 52.3 9.8 18 194-211 131-148 (479)
453 1w36_D RECD, exodeoxyribonucle 94.6 0.017 6E-07 60.8 3.7 26 194-219 164-189 (608)
454 2gk6_A Regulator of nonsense t 94.6 0.019 6.5E-07 60.7 3.9 24 195-218 196-219 (624)
455 1wms_A RAB-9, RAB9, RAS-relate 94.6 0.02 7E-07 49.0 3.5 24 195-218 8-31 (177)
456 1nij_A Hypothetical protein YJ 94.6 0.014 4.9E-07 56.3 2.6 24 195-218 5-28 (318)
457 1e69_A Chromosome segregation 94.6 0.015 5.2E-07 56.1 2.8 23 196-218 26-48 (322)
458 2r8r_A Sensor protein; KDPD, P 94.6 0.022 7.4E-07 52.4 3.7 24 196-219 8-31 (228)
459 3qkt_A DNA double-strand break 94.6 0.021 7.1E-07 55.6 3.8 24 195-218 24-47 (339)
460 1z08_A RAS-related protein RAB 94.6 0.022 7.4E-07 48.4 3.5 24 195-218 7-30 (170)
461 1ky3_A GTP-binding protein YPT 94.6 0.021 7.3E-07 48.9 3.5 24 195-218 9-32 (182)
462 1g16_A RAS-related protein SEC 94.5 0.02 6.8E-07 48.5 3.2 22 196-217 5-26 (170)
463 1fuu_A Yeast initiation factor 94.5 0.12 4.1E-06 50.2 9.3 17 195-211 59-75 (394)
464 2lkc_A Translation initiation 94.5 0.022 7.4E-07 48.8 3.4 24 194-217 8-31 (178)
465 2wsm_A Hydrogenase expression/ 94.5 0.022 7.4E-07 51.1 3.5 25 195-219 31-55 (221)
466 1c1y_A RAS-related protein RAP 94.5 0.023 7.9E-07 47.9 3.4 22 196-217 5-26 (167)
467 2z0m_A 337AA long hypothetical 94.5 0.12 4.1E-06 48.9 8.9 24 194-217 31-54 (337)
468 2nzj_A GTP-binding protein REM 94.4 0.02 7E-07 48.8 3.1 23 196-218 6-28 (175)
469 2erx_A GTP-binding protein DI- 94.4 0.02 6.9E-07 48.5 3.0 23 195-217 4-26 (172)
470 1fx0_A ATP synthase alpha chai 94.4 0.092 3.2E-06 53.7 8.3 30 190-219 159-189 (507)
471 1r2q_A RAS-related protein RAB 94.4 0.024 8.2E-07 47.9 3.4 23 195-217 7-29 (170)
472 4hlc_A DTMP kinase, thymidylat 94.4 0.026 9E-07 50.9 3.9 26 194-219 2-27 (205)
473 3vlf_B 26S protease regulatory 94.4 0.024 8.3E-07 43.9 3.1 45 345-398 2-46 (88)
474 2v3c_C SRP54, signal recogniti 94.4 0.018 6.2E-07 58.1 3.0 26 194-219 99-124 (432)
475 1upt_A ARL1, ADP-ribosylation 94.4 0.03 1E-06 47.5 4.0 24 194-217 7-30 (171)
476 3oaa_A ATP synthase subunit al 94.4 0.12 4.2E-06 52.6 9.0 28 191-218 159-187 (513)
477 3bc1_A RAS-related protein RAB 94.3 0.025 8.6E-07 49.0 3.4 23 195-217 12-34 (195)
478 2gks_A Bifunctional SAT/APS ki 94.3 0.024 8.4E-07 58.9 3.8 27 194-220 372-398 (546)
479 1r8s_A ADP-ribosylation factor 94.3 0.026 9E-07 47.6 3.4 22 197-218 3-24 (164)
480 4ag6_A VIRB4 ATPase, type IV s 94.3 0.026 8.8E-07 55.9 3.8 25 194-218 35-59 (392)
481 3q85_A GTP-binding protein REM 94.3 0.023 7.9E-07 48.2 3.0 21 196-216 4-24 (169)
482 4dsu_A GTPase KRAS, isoform 2B 94.3 0.025 8.5E-07 48.9 3.3 23 196-218 6-28 (189)
483 2fn4_A P23, RAS-related protei 94.3 0.025 8.6E-07 48.4 3.3 23 195-217 10-32 (181)
484 2c61_A A-type ATP synthase non 94.2 0.15 5.1E-06 51.7 9.3 30 191-220 149-178 (469)
485 2y8e_A RAB-protein 6, GH09086P 94.2 0.023 8E-07 48.5 3.0 23 195-217 15-37 (179)
486 3q72_A GTP-binding protein RAD 94.2 0.021 7.1E-07 48.3 2.6 21 196-216 4-24 (166)
487 3clv_A RAB5 protein, putative; 94.2 0.025 8.6E-07 49.3 3.3 24 195-218 8-31 (208)
488 2hxs_A RAB-26, RAS-related pro 94.2 0.022 7.7E-07 48.8 2.8 23 195-217 7-29 (178)
489 2p6r_A Afuhel308 helicase; pro 94.2 0.047 1.6E-06 58.4 5.8 19 194-212 40-58 (702)
490 3con_A GTPase NRAS; structural 94.2 0.028 9.7E-07 48.9 3.4 24 195-218 22-45 (190)
491 2oil_A CATX-8, RAS-related pro 94.1 0.029 9.8E-07 49.0 3.4 24 195-218 26-49 (193)
492 2ck3_A ATP synthase subunit al 94.1 0.14 4.9E-06 52.3 9.0 29 191-219 159-188 (510)
493 2a9k_A RAS-related protein RAL 94.1 0.03 1E-06 48.2 3.4 24 195-218 19-42 (187)
494 1rif_A DAR protein, DNA helica 94.1 0.087 3E-06 49.4 6.9 22 197-218 131-152 (282)
495 1m7b_A RND3/RHOE small GTP-bin 94.1 0.025 8.7E-07 49.1 3.0 23 195-217 8-30 (184)
496 2efe_B Small GTP-binding prote 94.1 0.031 1.1E-06 48.0 3.5 23 195-217 13-35 (181)
497 3vr4_D V-type sodium ATPase su 94.1 0.18 6.3E-06 50.9 9.5 29 191-219 148-176 (465)
498 2bme_A RAB4A, RAS-related prot 94.0 0.026 9E-07 48.7 3.0 24 195-218 11-34 (186)
499 3t1o_A Gliding protein MGLA; G 94.0 0.027 9.1E-07 49.0 3.0 25 195-219 15-39 (198)
500 3vr4_A V-type sodium ATPase ca 94.0 0.23 7.8E-06 51.5 10.2 29 191-219 229-257 (600)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-35 Score=294.16 Aligned_cols=217 Identities=26% Similarity=0.385 Sum_probs=188.3
Q ss_pred ccchhhhhhhchhhHHHHHHHHHHHHH----HHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCc
Q 014376 153 EFDGMWESLIYESGLKQRLLHYAASAL----MFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQ 228 (426)
Q Consensus 153 ~~~~~~~~lv~~~~~k~~L~~~~~~~~----~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~ 228 (426)
.++-.|+++.|.+++|+.|.+.+..++ .|...|+.+ ++++|||||||||||++|+++|++++.+|
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~-----prGvLL~GPPGTGKTllAkAiA~e~~~~f------ 210 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQ-----PKGVILYGPPGTGKTLLARAVAHHTDCKF------ 210 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCC-----CCCEEEESCSSSSHHHHHHHHHHHHTCEE------
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCC-----CCceEEeCCCCCCHHHHHHHHHHhhCCCc------
Confidence 345689999999999999998877654 566678776 79999999999999999999999997766
Q ss_pred ceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhh
Q 014376 229 CQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK 308 (426)
Q Consensus 229 ~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~ 308 (426)
+.+++.++.++|+|++.+.++.+|..++. ..|+||||||+|.++.+|.....+ ......++++.||++||+
T Consensus 211 ---~~v~~s~l~sk~vGese~~vr~lF~~Ar~-----~aP~IIFiDEiDai~~~R~~~~~~-~~~~~~~~l~~lL~~lDg 281 (405)
T 4b4t_J 211 ---IRVSGAELVQKYIGEGSRMVRELFVMARE-----HAPSIIFMDEIDSIGSTRVEGSGG-GDSEVQRTMLELLNQLDG 281 (405)
T ss_dssp ---EEEEGGGGSCSSTTHHHHHHHHHHHHHHH-----TCSEEEEEESSSCCTTSCSCSSSG-GGGHHHHHHHHHHHHHHT
T ss_pred ---eEEEhHHhhccccchHHHHHHHHHHHHHH-----hCCceEeeecchhhccCCCCCCCC-CcHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999988 589999999999998876432222 123446789999999999
Q ss_pred hcCCCcEEEEEEeCCCCcCCHHHhc--ccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhc
Q 014376 309 LKSSPNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEK 386 (426)
Q Consensus 309 l~~~~~viVi~TtN~~~~ld~al~~--R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~ 386 (426)
+....+++||+|||.++.+|+|+++ |||..|+++.|+.++|.+||+.++++.. .....++..++..++|
T Consensus 282 ~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~---------l~~dvdl~~lA~~t~G 352 (405)
T 4b4t_J 282 FETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMN---------LTRGINLRKVAEKMNG 352 (405)
T ss_dssp TTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSB---------CCSSCCHHHHHHHCCS
T ss_pred cCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCC---------CCccCCHHHHHHHCCC
Confidence 9999999999999999999999996 9999999999999999999998876532 2345689999999999
Q ss_pred cCchHHHHhhhh
Q 014376 387 LSNPDIQEADRS 398 (426)
Q Consensus 387 ~s~~di~~~~~~ 398 (426)
|+++||+..|+.
T Consensus 353 ~SGADi~~l~~e 364 (405)
T 4b4t_J 353 CSGADVKGVCTE 364 (405)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999999988754
No 2
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-34 Score=290.90 Aligned_cols=219 Identities=21% Similarity=0.318 Sum_probs=190.3
Q ss_pred ccccchhhhhhhchhhHHHHHHHHHHHH----HHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCC
Q 014376 151 AKEFDGMWESLIYESGLKQRLLHYAASA----LMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRY 226 (426)
Q Consensus 151 ~~~~~~~~~~lv~~~~~k~~L~~~~~~~----~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~ 226 (426)
...+...|+++.|.+++|+.|.+.+..+ ..|...|..+ ++++|||||||||||++|+++|++++.+|
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~-----prGvLLyGPPGTGKTllAkAiA~e~~~~f---- 243 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRA-----PKGALMYGPPGTGKTLLARACAAQTNATF---- 243 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCC-----CCEEEEESCTTSSHHHHHHHHHHHHTCEE----
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCC-----CCeeEEECcCCCCHHHHHHHHHHHhCCCE----
Confidence 3456678999999999999999876654 4677778776 79999999999999999999999997666
Q ss_pred CcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHh
Q 014376 227 PQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQM 306 (426)
Q Consensus 227 ~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l 306 (426)
+.+++.++.++|+|++.+.++.+|..++.. .|+||||||+|.++.+|.....++. ....+.++.||+.|
T Consensus 244 -----~~v~~s~l~~~~vGese~~ir~lF~~A~~~-----aP~IifiDEiDal~~~R~~~~~~~~-~~~~~~~~~lL~~l 312 (434)
T 4b4t_M 244 -----LKLAAPQLVQMYIGEGAKLVRDAFALAKEK-----APTIIFIDELDAIGTKRFDSEKSGD-REVQRTMLELLNQL 312 (434)
T ss_dssp -----EEEEGGGGCSSCSSHHHHHHHHHHHHHHHH-----CSEEEEEECTHHHHCCCSSGGGGTT-HHHHHHHHHHHHHH
T ss_pred -----EEEehhhhhhcccchHHHHHHHHHHHHHhc-----CCeEEeecchhhhhhccCCCCCCCc-hHHHHHHHHHHHHh
Confidence 999999999999999999999999999884 8999999999999988754433322 23456788999999
Q ss_pred hhhcCCCcEEEEEEeCCCCcCCHHHhc--ccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHh
Q 014376 307 DKLKSSPNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILK 384 (426)
Q Consensus 307 d~l~~~~~viVi~TtN~~~~ld~al~~--R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~ 384 (426)
|++....+++||+|||.++.+|+|+++ |||..++++.|+.++|.+||+.+++++. .....++..++..+
T Consensus 313 dg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~---------~~~dvdl~~lA~~t 383 (434)
T 4b4t_M 313 DGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMT---------TDDDINWQELARST 383 (434)
T ss_dssp TTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSC---------BCSCCCHHHHHHHC
T ss_pred hccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCC---------CCCcCCHHHHHHhC
Confidence 999988999999999999999999986 9999999999999999999999987752 23456789999999
Q ss_pred hccCchHHHHhhhh
Q 014376 385 EKLSNPDIQEADRS 398 (426)
Q Consensus 385 ~~~s~~di~~~~~~ 398 (426)
+||+++||+..|+.
T Consensus 384 ~G~sGADi~~l~~e 397 (434)
T 4b4t_M 384 DEFNGAQLKAVTVE 397 (434)
T ss_dssp SSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999998754
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-34 Score=287.56 Aligned_cols=218 Identities=27% Similarity=0.397 Sum_probs=189.8
Q ss_pred cccchhhhhhhchhhHHHHHHHHHHHHH----HHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCC
Q 014376 152 KEFDGMWESLIYESGLKQRLLHYAASAL----MFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYP 227 (426)
Q Consensus 152 ~~~~~~~~~lv~~~~~k~~L~~~~~~~~----~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~ 227 (426)
..++-.|+++.|.+++|+.|.+.+..++ .|...|+.+ +++||||||||||||++|+++|++++.+|
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~-----prGvLLyGPPGTGKTlLAkAiA~e~~~~f----- 244 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKP-----PKGVILYGAPGTGKTLLAKAVANQTSATF----- 244 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCC-----CSEEEEESSTTTTHHHHHHHHHHHHTCEE-----
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCC-----CCCCceECCCCchHHHHHHHHHHHhCCCE-----
Confidence 4455689999999999999998877654 577778775 89999999999999999999999997766
Q ss_pred cceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhh
Q 014376 228 QCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMD 307 (426)
Q Consensus 228 ~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld 307 (426)
+.+++.++.++|++++++.++.+|..++. ..|+||||||+|.++.+|...-.+++ ....+.++.+|+.+|
T Consensus 245 ----i~v~~s~l~sk~vGesek~ir~lF~~Ar~-----~aP~IIfiDEiDai~~~R~~~~~~~~-~~~~~~l~~LL~~lD 314 (437)
T 4b4t_I 245 ----LRIVGSELIQKYLGDGPRLCRQIFKVAGE-----NAPSIVFIDEIDAIGTKRYDSNSGGE-REIQRTMLELLNQLD 314 (437)
T ss_dssp ----EEEESGGGCCSSSSHHHHHHHHHHHHHHH-----TCSEEEEEEEESSSSCCCSCSSCSSC-CHHHHHHHHHHHHHH
T ss_pred ----EEEEHHHhhhccCchHHHHHHHHHHHHHh-----cCCcEEEEehhhhhcccCCCCCCCcc-HHHHHHHHHHHHHhh
Confidence 99999999999999999999999999987 58999999999999988754333322 345678899999999
Q ss_pred hhcCCCcEEEEEEeCCCCcCCHHHhc--ccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhh
Q 014376 308 KLKSSPNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKE 385 (426)
Q Consensus 308 ~l~~~~~viVi~TtN~~~~ld~al~~--R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~ 385 (426)
++....+++||+|||.++.||+|+++ |||.+|+++.|+.++|.+||+.+++++. .....++..++..++
T Consensus 315 g~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~---------l~~dvdl~~LA~~T~ 385 (437)
T 4b4t_I 315 GFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN---------LSEDVNLETLVTTKD 385 (437)
T ss_dssp HCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC---------BCSCCCHHHHHHHCC
T ss_pred CcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC---------CCCcCCHHHHHHhCC
Confidence 99888999999999999999999996 9999999999999999999998886532 234568999999999
Q ss_pred ccCchHHHHhhhh
Q 014376 386 KLSNPDIQEADRS 398 (426)
Q Consensus 386 ~~s~~di~~~~~~ 398 (426)
|||++||+..|+.
T Consensus 386 GfSGADI~~l~~e 398 (437)
T 4b4t_I 386 DLSGADIQAMCTE 398 (437)
T ss_dssp SCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 9999999988754
No 4
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-33 Score=283.72 Aligned_cols=218 Identities=29% Similarity=0.386 Sum_probs=189.1
Q ss_pred cccchhhhhhhchhhHHHHHHHHHHHH----HHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCC
Q 014376 152 KEFDGMWESLIYESGLKQRLLHYAASA----LMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYP 227 (426)
Q Consensus 152 ~~~~~~~~~lv~~~~~k~~L~~~~~~~----~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~ 227 (426)
..++-.|+++.|.+++|+.|.+.+..+ ..|...|+.+ ++++|||||||||||++|+++|+.++.++
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~-----prGiLL~GPPGtGKT~lakAiA~~~~~~~----- 234 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDP-----PRGVLLYGPPGTGKTMLVKAVANSTKAAF----- 234 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCC-----CCEEEEESCTTTTHHHHHHHHHHHHTCEE-----
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCC-----CceEEEECCCCCCHHHHHHHHHHHhCCCe-----
Confidence 344568999999999999999877654 4566778775 89999999999999999999999997665
Q ss_pred cceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhh
Q 014376 228 QCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMD 307 (426)
Q Consensus 228 ~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld 307 (426)
+.+++.++.++|+|++.+.++.+|..++. ..|+|+||||+|.++..|.....++ .....++++.||++||
T Consensus 235 ----~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~-----~aP~IifiDEiD~i~~~R~~~~~~~-~~~~~r~l~~lL~~ld 304 (428)
T 4b4t_K 235 ----IRVNGSEFVHKYLGEGPRMVRDVFRLARE-----NAPSIIFIDEVDSIATKRFDAQTGS-DREVQRILIELLTQMD 304 (428)
T ss_dssp ----EEEEGGGTCCSSCSHHHHHHHHHHHHHHH-----TCSEEEEEECTHHHHCSCSSSCSCC-CCHHHHHHHHHHHHHH
T ss_pred ----EEEecchhhccccchhHHHHHHHHHHHHH-----cCCCeeechhhhhhhccccCCCCCC-ChHHHHHHHHHHHHhh
Confidence 99999999999999999999999999987 5899999999999998875433332 2355788999999999
Q ss_pred hhcCCCcEEEEEEeCCCCcCCHHHhc--ccCeEEEeC-CCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHh
Q 014376 308 KLKSSPNVIILTTSNITAAIDIAFVD--RADIKAYVG-PPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILK 384 (426)
Q Consensus 308 ~l~~~~~viVi~TtN~~~~ld~al~~--R~~~~i~i~-~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~ 384 (426)
++....+++||+|||.++.+|+|+++ |||..|++| +|+.++|..||+.+++++. .....++..++..+
T Consensus 305 g~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~---------l~~~~dl~~lA~~t 375 (428)
T 4b4t_K 305 GFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMS---------LAPEADLDSLIIRN 375 (428)
T ss_dssp HSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSC---------BCTTCCHHHHHHHT
T ss_pred CCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCC---------CCcccCHHHHHHHC
Confidence 99999999999999999999999995 999999996 8999999999998886542 23456799999999
Q ss_pred hccCchHHHHhhhh
Q 014376 385 EKLSNPDIQEADRS 398 (426)
Q Consensus 385 ~~~s~~di~~~~~~ 398 (426)
+||+++||+..|+.
T Consensus 376 ~G~sgadi~~l~~e 389 (428)
T 4b4t_K 376 DSLSGAVIAAIMQE 389 (428)
T ss_dssp TTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999988754
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-33 Score=285.63 Aligned_cols=217 Identities=23% Similarity=0.333 Sum_probs=187.7
Q ss_pred ccchhhhhhhchhhHHHHHHHHHHH----HHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCc
Q 014376 153 EFDGMWESLIYESGLKQRLLHYAAS----ALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQ 228 (426)
Q Consensus 153 ~~~~~~~~lv~~~~~k~~L~~~~~~----~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~ 228 (426)
.++-.|+++.|.+++|+.|.+.+.. +..|...|+.+ ++++|||||||||||++|+++|++++.+|
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~p-----prGILLyGPPGTGKTlLAkAiA~e~~~~f------ 271 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDP-----PKGILLYGPPGTGKTLCARAVANRTDATF------ 271 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCC-----CSEEEECSCTTSSHHHHHHHHHHHHTCEE------
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCC-----CCceEeeCCCCCcHHHHHHHHHhccCCCe------
Confidence 4556799999999999999987655 44677778776 79999999999999999999999997665
Q ss_pred ceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhh
Q 014376 229 CQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK 308 (426)
Q Consensus 229 ~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~ 308 (426)
+.+++.++.++|+|++.+.++.+|..++. ..|+||||||+|.++.+|..... +......+.++.+|.+|++
T Consensus 272 ---i~vs~s~L~sk~vGesek~ir~lF~~Ar~-----~aP~IIfiDEiDai~~~R~~~~~-~~~~~~~~~l~~lL~~lDg 342 (467)
T 4b4t_H 272 ---IRVIGSELVQKYVGEGARMVRELFEMART-----KKACIIFFDEIDAVGGARFDDGA-GGDNEVQRTMLELITQLDG 342 (467)
T ss_dssp ---EEEEGGGGCCCSSSHHHHHHHHHHHHHHH-----TCSEEEEEECCTTTSBCCSSSSC-GGGGHHHHHHHHHHHHHHS
T ss_pred ---EEEEhHHhhcccCCHHHHHHHHHHHHHHh-----cCCceEeecccccccccccCcCC-CccHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999988 58999999999999887744222 1223446788899999999
Q ss_pred hcCCCcEEEEEEeCCCCcCCHHHhc--ccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhc
Q 014376 309 LKSSPNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEK 386 (426)
Q Consensus 309 l~~~~~viVi~TtN~~~~ld~al~~--R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~ 386 (426)
+....+++||+|||+++.||+|+++ |||..++++.|+.++|.+||+.+++.+. .....++..++..++|
T Consensus 343 ~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~---------l~~dvdl~~LA~~T~G 413 (467)
T 4b4t_H 343 FDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMS---------VERGIRWELISRLCPN 413 (467)
T ss_dssp SCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSC---------BCSSCCHHHHHHHCCS
T ss_pred cCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCC---------CCCCCCHHHHHHHCCC
Confidence 9888999999999999999999996 9999999999999999999998876542 2345678999999999
Q ss_pred cCchHHHHhhhh
Q 014376 387 LSNPDIQEADRS 398 (426)
Q Consensus 387 ~s~~di~~~~~~ 398 (426)
|+++||+..|+.
T Consensus 414 fSGADI~~l~~e 425 (467)
T 4b4t_H 414 STGAELRSVCTE 425 (467)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999999998754
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-33 Score=285.69 Aligned_cols=217 Identities=24% Similarity=0.365 Sum_probs=187.3
Q ss_pred ccchhhhhhhchhhHHHHHHHHHHHHH----HHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCc
Q 014376 153 EFDGMWESLIYESGLKQRLLHYAASAL----MFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQ 228 (426)
Q Consensus 153 ~~~~~~~~lv~~~~~k~~L~~~~~~~~----~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~ 228 (426)
.++-.|+++.|.+++|+.|.+.+..++ .|...|+.+ ++++|||||||||||++|+++|++++.+|
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~-----prGvLL~GPPGtGKTllAkAiA~e~~~~~------ 243 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKP-----PKGVLLYGPPGTGKTLLAKAVAATIGANF------ 243 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCC-----CCEEEEESCTTSSHHHHHHHHHHHHTCEE------
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCC-----CCeEEEECCCCCcHHHHHHHHHHHhCCCE------
Confidence 345579999999999999998876644 566778776 79999999999999999999999997665
Q ss_pred ceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhh
Q 014376 229 CQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK 308 (426)
Q Consensus 229 ~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~ 308 (426)
+.++++++.++|.+++.+.++.+|..++. ..|+||||||+|.++.+|...-.+ ......++++.||++||+
T Consensus 244 ---~~v~~s~l~sk~~Gese~~ir~~F~~A~~-----~~P~IifiDEiDai~~~R~~~~~~-~~~~~~~~l~~lL~~lDg 314 (437)
T 4b4t_L 244 ---IFSPASGIVDKYIGESARIIREMFAYAKE-----HEPCIIFMDEVDAIGGRRFSEGTS-ADREIQRTLMELLTQMDG 314 (437)
T ss_dssp ---EEEEGGGTCCSSSSHHHHHHHHHHHHHHH-----SCSEEEEEECCCSSSCCCSSSCCS-STTHHHHHHHHHHHHHHS
T ss_pred ---EEEehhhhccccchHHHHHHHHHHHHHHh-----cCCceeeeecccccccccccCCCC-cchHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999987 589999999999998877442211 123446788999999999
Q ss_pred hcCCCcEEEEEEeCCCCcCCHHHh--cccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhc
Q 014376 309 LKSSPNVIILTTSNITAAIDIAFV--DRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEK 386 (426)
Q Consensus 309 l~~~~~viVi~TtN~~~~ld~al~--~R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~ 386 (426)
+....+++||+|||.++.||+|++ +|||..|+++.|+.++|.+||+.++.++. .....++..++..++|
T Consensus 315 ~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~---------~~~d~dl~~lA~~t~G 385 (437)
T 4b4t_L 315 FDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVK---------KTGEFDFEAAVKMSDG 385 (437)
T ss_dssp SSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSC---------BCSCCCHHHHHHTCCS
T ss_pred ccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCC---------CCcccCHHHHHHhCCC
Confidence 988899999999999999999998 46999999999999999999999887642 2345679999999999
Q ss_pred cCchHHHHhhhh
Q 014376 387 LSNPDIQEADRS 398 (426)
Q Consensus 387 ~s~~di~~~~~~ 398 (426)
|+++||+..|+.
T Consensus 386 ~sGADi~~l~~e 397 (437)
T 4b4t_L 386 FNGADIRNCATE 397 (437)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999999998754
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.96 E-value=3.6e-31 Score=286.38 Aligned_cols=215 Identities=28% Similarity=0.459 Sum_probs=157.1
Q ss_pred chhhhhhhchhhHHHHHHHHHHHHHH----HhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcce
Q 014376 155 DGMWESLIYESGLKQRLLHYAASALM----FAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQ 230 (426)
Q Consensus 155 ~~~~~~lv~~~~~k~~L~~~~~~~~~----~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~ 230 (426)
.-.|+++.+.+++|+.|.+.+..+.. |...|..+ ++++|||||||||||++|+++|++++.+|
T Consensus 473 ~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~-----~~gvLl~GPPGtGKT~lAkaiA~e~~~~f-------- 539 (806)
T 3cf2_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTP-----SKGVLFYGPPGCGKTLLAKAIANECQANF-------- 539 (806)
T ss_dssp CCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCC-----CSCCEEESSTTSSHHHHHHHHHHTTTCEE--------
T ss_pred CCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCC-----CceEEEecCCCCCchHHHHHHHHHhCCce--------
Confidence 45699999999999999988776543 33445444 78999999999999999999999997665
Q ss_pred EEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc
Q 014376 231 LVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK 310 (426)
Q Consensus 231 ~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~ 310 (426)
+.+++.++.++|+|++++.++.+|..++. ..|+||||||+|.++.+|..... .......+++++||++||++.
T Consensus 540 -~~v~~~~l~s~~vGese~~vr~lF~~Ar~-----~~P~IifiDEiDsl~~~R~~~~~-~~~~~~~rv~~~lL~~mdg~~ 612 (806)
T 3cf2_A 540 -ISIKGPELLTMWFGESEANVREIFDKARQ-----AAPCVLFFDELDSIAKARGGNIG-DGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp -EECCHHHHHTTTCSSCHHHHHHHHHHHHT-----TCSEEEECSCGGGCC---------------CHHHHHHHHHHHSSC
T ss_pred -EEeccchhhccccchHHHHHHHHHHHHHH-----cCCceeechhhhHHhhccCCCCC-CCchHHHHHHHHHHHHHhCCC
Confidence 89999999999999999999999999987 58999999999999988754321 122344689999999999999
Q ss_pred CCCcEEEEEEeCCCCcCCHHHhc--ccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhccC
Q 014376 311 SSPNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLS 388 (426)
Q Consensus 311 ~~~~viVi~TtN~~~~ld~al~~--R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~s 388 (426)
...+++||++||+++.||+|+++ ||+..++++.|+.++|.+||+.++++.. .....++..++..++|||
T Consensus 613 ~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~---------~~~~~dl~~la~~t~g~S 683 (806)
T 3cf2_A 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP---------VAKDVDLEFLAKMTNGFS 683 (806)
T ss_dssp SSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC-----------CCC--------------
T ss_pred CCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCC---------CCCCCCHHHHHHhCCCCC
Confidence 88999999999999999999997 9999999999999999999998875432 234567899999999999
Q ss_pred chHHHHhhhh
Q 014376 389 NPDIQEADRS 398 (426)
Q Consensus 389 ~~di~~~~~~ 398 (426)
++||+..|+.
T Consensus 684 Gadi~~l~~~ 693 (806)
T 3cf2_A 684 GADLTEICQR 693 (806)
T ss_dssp --CHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999764
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.96 E-value=6.4e-29 Score=268.79 Aligned_cols=211 Identities=27% Similarity=0.370 Sum_probs=183.5
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHH----HhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceE
Q 014376 156 GMWESLIYESGLKQRLLHYAASALM----FAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQL 231 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~----~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~ 231 (426)
-.|+++.|.+++|+.|.+.+..++. |...|..+ +++||||||||||||+|||++|++++.++
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~-----p~GILL~GPPGTGKT~LAraiA~elg~~~--------- 266 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKP-----PRGILLYGPPGTGKTLIARAVANETGAFF--------- 266 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCC-----CCEEEEECCTTSCHHHHHHHHHTTTTCEE---------
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCC-----CCeEEEECCCCCCHHHHHHHHHHHhCCeE---------
Confidence 4699999999999999998876554 44455554 79999999999999999999999997655
Q ss_pred EEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcC
Q 014376 232 VEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS 311 (426)
Q Consensus 232 i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~ 311 (426)
+.+++.++.++|.+++++.++.+|+.++. ..|+||||||+|.++.++.. +......+++++|+..|+++..
T Consensus 267 ~~v~~~~l~sk~~gese~~lr~lF~~A~~-----~~PsIIfIDEiDal~~~r~~----~~~~~~~riv~~LL~~mdg~~~ 337 (806)
T 3cf2_A 267 FLINGPEIMSKLAGESESNLRKAFEEAEK-----NAPAIIFIDELDAIAPKREK----THGEVERRIVSQLLTLMDGLKQ 337 (806)
T ss_dssp EEEEHHHHHSSCTTHHHHHHHHHHHHHTT-----SCSEEEEEESGGGTCCTTTT----CCCTTHHHHHHHHHTHHHHCCG
T ss_pred EEEEhHHhhcccchHHHHHHHHHHHHHHH-----cCCeEEEEehhcccccccCC----CCChHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999876 58999999999999887643 2234557899999999999988
Q ss_pred CCcEEEEEEeCCCCcCCHHHhc--ccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhccCc
Q 014376 312 SPNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSN 389 (426)
Q Consensus 312 ~~~viVi~TtN~~~~ld~al~~--R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~s~ 389 (426)
.++++||++||.++.+|+++++ ||+..++++.|+.++|.+||+.++++.. .....++..++..++||++
T Consensus 338 ~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~---------~~~dvdl~~lA~~T~Gfsg 408 (806)
T 3cf2_A 338 RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK---------LADDVDLEQVANETHGHVG 408 (806)
T ss_dssp GGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSE---------ECTTCCHHHHHHHCCSCCH
T ss_pred cCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCC---------CCcccCHHHHHHhcCCCCH
Confidence 8999999999999999999996 9999999999999999999998765432 3456789999999999999
Q ss_pred hHHHHhhhh
Q 014376 390 PDIQEADRS 398 (426)
Q Consensus 390 ~di~~~~~~ 398 (426)
+|++..++.
T Consensus 409 aDL~~Lv~e 417 (806)
T 3cf2_A 409 ADLAALCSE 417 (806)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988754
No 9
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.95 E-value=4e-27 Score=231.95 Aligned_cols=217 Identities=27% Similarity=0.406 Sum_probs=178.1
Q ss_pred chhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEE
Q 014376 155 DGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEV 234 (426)
Q Consensus 155 ~~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i 234 (426)
...|++++|.+++|+.|.+.+..+..+...--. ....++++||+||||||||++|+++|+.++ +..++.+
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~--~~~~~~~iLL~GppGtGKT~la~ala~~~~--------~~~~~~i 77 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG--KRTPWRGILLFGPPGTGKSYLAKAVATEAN--------NSTFFSI 77 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT--TCCCCSEEEEESSSSSCHHHHHHHHHHHTT--------SCEEEEE
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC--CCCCCceEEEECCCCccHHHHHHHHHHHcC--------CCcEEEE
Confidence 357999999999999999998877665543100 112358999999999999999999999982 2345899
Q ss_pred eccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcC-CC
Q 014376 235 NAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS-SP 313 (426)
Q Consensus 235 ~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~-~~ 313 (426)
++.++.++|.+++.+.+..+|..++. ..+++|||||+|.+...+.. ++.....++++.++..++++.. ..
T Consensus 78 ~~~~l~~~~~g~~~~~~~~lf~~a~~-----~~~~vl~iDEid~l~~~~~~----~~~~~~~~~~~~ll~~ld~~~~~~~ 148 (322)
T 1xwi_A 78 SSSDLVSKWLGESEKLVKNLFQLARE-----NKPSIIFIDEIDSLCGSRSE----NESEAARRIKTEFLVQMQGVGVDND 148 (322)
T ss_dssp ECCSSCCSSCCSCHHHHHHHHHHHHH-----TSSEEEEEETTTGGGCCSSS----CCTTHHHHHHHHHHHHHHCSSSCCT
T ss_pred EhHHHHhhhhhHHHHHHHHHHHHHHh-----cCCcEEEeecHHHhcccccc----ccchHHHHHHHHHHHHHhcccccCC
Confidence 99999999999999999999998876 47899999999999875532 2334456888999999998753 57
Q ss_pred cEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhccCchHHH
Q 014376 314 NVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQ 393 (426)
Q Consensus 314 ~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~s~~di~ 393 (426)
+++||++||.++.+|+++++||+..++++.|+.++|.+|++.++.... ......++..++..++||+++|++
T Consensus 149 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~--------~~l~~~~l~~la~~t~G~sgadl~ 220 (322)
T 1xwi_A 149 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQ--------NSLTEADFRELGRKTDGYSGADIS 220 (322)
T ss_dssp TEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCC--------BCCCHHHHHHHHHTCTTCCHHHHH
T ss_pred CEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCC--------CCCCHHHHHHHHHHcCCCCHHHHH
Confidence 899999999999999999999999999999999999999998876431 012345678899999999999999
Q ss_pred Hhhhh
Q 014376 394 EADRS 398 (426)
Q Consensus 394 ~~~~~ 398 (426)
..++.
T Consensus 221 ~l~~~ 225 (322)
T 1xwi_A 221 IIVRD 225 (322)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88754
No 10
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.95 E-value=1.2e-26 Score=226.41 Aligned_cols=215 Identities=28% Similarity=0.454 Sum_probs=178.5
Q ss_pred chhhhhhhchhhHHHHHHHHHHHHH----HHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcce
Q 014376 155 DGMWESLIYESGLKQRLLHYAASAL----MFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQ 230 (426)
Q Consensus 155 ~~~~~~lv~~~~~k~~L~~~~~~~~----~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~ 230 (426)
...|++++|.+++|+.|.+++..+. .|...|+.+ ++++||+||||||||++|+++|+.++.+
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~-----~~~vLL~Gp~GtGKT~la~ala~~~~~~--------- 76 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTP-----SKGVLFYGPPGCGKTLLAKAIANECQAN--------- 76 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCC-----CSEEEEECSSSSSHHHHHHHHHHHTTCE---------
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCC-----CceEEEECCCCcCHHHHHHHHHHHhCCC---------
Confidence 3569999999999999999887654 444556554 7899999999999999999999998644
Q ss_pred EEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc
Q 014376 231 LVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK 310 (426)
Q Consensus 231 ~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~ 310 (426)
++.+++.++.++|+++..+.+..+|+.+.. ..|++++|||+|.+...+....... .....++++.+++.++++.
T Consensus 77 ~i~v~~~~l~~~~~g~~~~~~~~~f~~a~~-----~~p~il~iDEid~l~~~~~~~~~~~-~~~~~~~~~~lL~~l~~~~ 150 (301)
T 3cf0_A 77 FISIKGPELLTMWFGESEANVREIFDKARQ-----AAPCVLFFDELDSIAKARGGNIGDG-GGAADRVINQILTEMDGMS 150 (301)
T ss_dssp EEEECHHHHHHHHHTTCTTHHHHHHHHHHH-----TCSEEEEECSTTHHHHHHTTTTCCS-SCSCCHHHHHHHHHHHSSC
T ss_pred EEEEEhHHHHhhhcCchHHHHHHHHHHHHh-----cCCeEEEEEChHHHhhccCCCcCCc-chHHHHHHHHHHHHhhccc
Confidence 489999999999999998889999998876 4789999999999998775432111 1233478899999999887
Q ss_pred CCCcEEEEEEeCCCCcCCHHHhc--ccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhccC
Q 014376 311 SSPNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLS 388 (426)
Q Consensus 311 ~~~~viVi~TtN~~~~ld~al~~--R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~s 388 (426)
...+++||+|||.++.+|+++++ ||+..++++.|+.++|.+|++.++++.. .....++..++..+.|++
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~---------~~~~~~~~~la~~~~g~s 221 (301)
T 3cf0_A 151 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP---------VAKDVDLEFLAKMTNGFS 221 (301)
T ss_dssp TTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC---------BCSSCCHHHHHHTCSSCC
T ss_pred CCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCC---------CCccchHHHHHHHcCCCC
Confidence 77889999999999999999987 9999999999999999999988876531 124457888999999999
Q ss_pred chHHHHhhhh
Q 014376 389 NPDIQEADRS 398 (426)
Q Consensus 389 ~~di~~~~~~ 398 (426)
++|+++.+..
T Consensus 222 g~dl~~l~~~ 231 (301)
T 3cf0_A 222 GADLTEICQR 231 (301)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988754
No 11
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.95 E-value=8.8e-27 Score=229.34 Aligned_cols=215 Identities=29% Similarity=0.404 Sum_probs=174.9
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEe
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVN 235 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~ 235 (426)
..|++++|.+++|+.|.+++..+..+...--. ....++++||+||||||||++|+++|+.++.++ +.++
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~--~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~---------~~v~ 83 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKG--NRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---------FSVS 83 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT--TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE---------EEEE
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc--CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE---------EEEc
Confidence 46999999999999999998877655542111 112257899999999999999999999986554 9999
Q ss_pred ccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc-CCCc
Q 014376 236 AHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK-SSPN 314 (426)
Q Consensus 236 ~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~-~~~~ 314 (426)
+.++.++|.++..+.+..+|..++. ..+++|+|||+|.+...+... +.....++++.++..++.+. ...+
T Consensus 84 ~~~l~~~~~g~~~~~~~~~f~~a~~-----~~~~vl~iDEid~l~~~~~~~----~~~~~~~~~~~ll~~l~~~~~~~~~ 154 (322)
T 3eie_A 84 SSDLVSKWMGESEKLVKQLFAMARE-----NKPSIIFIDQVDALTGTRGEG----ESEASRRIKTELLVQMNGVGNDSQG 154 (322)
T ss_dssp HHHHHTTTGGGHHHHHHHHHHHHHH-----TSSEEEEEECGGGGSCC----------CCTHHHHHHHHHHHGGGGTSCCC
T ss_pred hHHHhhcccchHHHHHHHHHHHHHh-----cCCeEEEechhhhhhccCCCC----cchHHHHHHHHHHHHhccccccCCc
Confidence 9999999999999999999999886 488999999999997765322 22344678899999999885 5578
Q ss_pred EEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhccCchHHHH
Q 014376 315 VIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQE 394 (426)
Q Consensus 315 viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~s~~di~~ 394 (426)
++||+|||.++.+|+++++||+..++++.|+.++|.+|++.++.... .......+..++..++||+++||..
T Consensus 155 v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~--------~~~~~~~l~~la~~t~g~sg~di~~ 226 (322)
T 3eie_A 155 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTP--------CVLTKEDYRTLGAMTEGYSGSDIAV 226 (322)
T ss_dssp EEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCC--------CCCCHHHHHHHHHTTTTCCHHHHHH
T ss_pred eEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCC--------CCCCHHHHHHHHHHcCCCCHHHHHH
Confidence 99999999999999999999999999999999999999998876421 1123346788999999999999998
Q ss_pred hhhh
Q 014376 395 ADRS 398 (426)
Q Consensus 395 ~~~~ 398 (426)
.++.
T Consensus 227 l~~~ 230 (322)
T 3eie_A 227 VVKD 230 (322)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8653
No 12
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.94 E-value=5.3e-26 Score=226.87 Aligned_cols=214 Identities=29% Similarity=0.424 Sum_probs=170.0
Q ss_pred cchhhhhhhchhhHHHHHHHHHHHHHHHhhc---CCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcce
Q 014376 154 FDGMWESLIYESGLKQRLLHYAASALMFAEK---GVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQ 230 (426)
Q Consensus 154 ~~~~~~~lv~~~~~k~~L~~~~~~~~~~~~~---g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~ 230 (426)
....|++++|.+++|+.|.+.+..+..+... +.. .++++||+||||||||++|+++|+.++.++
T Consensus 46 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~-----~~~~iLL~GppGtGKT~la~ala~~~~~~~-------- 112 (355)
T 2qp9_X 46 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRK-----PTSGILLYGPPGTGKSYLAKAVATEANSTF-------- 112 (355)
T ss_dssp -CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCC-----CCCCEEEECSTTSCHHHHHHHHHHHHTCEE--------
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCC-----CCceEEEECCCCCcHHHHHHHHHHHhCCCE--------
Confidence 3457999999999999999988766554432 222 257899999999999999999999996554
Q ss_pred EEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc
Q 014376 231 LVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK 310 (426)
Q Consensus 231 ~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~ 310 (426)
+.+++.++.++|.++..+.+..+|..+.. ..++||||||+|.+...+.. ++.....++++.++..|+.+.
T Consensus 113 -~~v~~~~l~~~~~g~~~~~~~~~f~~a~~-----~~~~vl~iDEid~l~~~r~~----~~~~~~~~~~~~ll~~l~~~~ 182 (355)
T 2qp9_X 113 -FSVSSSDLVSKWMGESEKLVKQLFAMARE-----NKPSIIFIDQVDALTGTRGE----GESEASRRIKTELLVQMNGVG 182 (355)
T ss_dssp -EEEEHHHHHSCC---CHHHHHHHHHHHHH-----TSSEEEEEECGGGGTC----------CTHHHHHHHHHHHHHHHCC
T ss_pred -EEeeHHHHhhhhcchHHHHHHHHHHHHHH-----cCCeEEEEechHhhcccCCC----CcchHHHHHHHHHHHHhhccc
Confidence 89999999999999999999999988776 47899999999999866532 233455678899999999875
Q ss_pred C-CCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhccCc
Q 014376 311 S-SPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSN 389 (426)
Q Consensus 311 ~-~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~s~ 389 (426)
. ..+++||+|||.++.+|+++++||+..+++++|+.++|.+|++.++.... ......++..++..++||++
T Consensus 183 ~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~--------~~~~~~~l~~la~~t~G~sg 254 (355)
T 2qp9_X 183 NDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTP--------SVLTKEDYRTLGAMTEGYSG 254 (355)
T ss_dssp ---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSC--------BCCCHHHHHHHHHHTTTCCH
T ss_pred ccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCC--------CCCCHHHHHHHHHHcCCCCH
Confidence 4 56899999999999999999999999999999999999999998876421 01234567889999999999
Q ss_pred hHHHHhhhh
Q 014376 390 PDIQEADRS 398 (426)
Q Consensus 390 ~di~~~~~~ 398 (426)
+||..+++.
T Consensus 255 ~dl~~l~~~ 263 (355)
T 2qp9_X 255 SDIAVVVKD 263 (355)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988654
No 13
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.94 E-value=1.8e-25 Score=215.24 Aligned_cols=215 Identities=27% Similarity=0.406 Sum_probs=166.0
Q ss_pred chhhhhhhchhhHHHHHHHHHHHHH----HHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcce
Q 014376 155 DGMWESLIYESGLKQRLLHYAASAL----MFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQ 230 (426)
Q Consensus 155 ~~~~~~lv~~~~~k~~L~~~~~~~~----~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~ 230 (426)
...|+++.|.+++|+.|.+++..+. .+...++.. +++++|+||||||||||++++|+.++. +
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~-----~~GvlL~Gp~GtGKTtLakala~~~~~---------~ 71 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVT-----PAGVLLAGPPGCGKTLLAKAVANESGL---------N 71 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCC-----CSEEEEESSTTSCHHHHHHHHHHHTTC---------E
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCC-----CCeEEEECCCCCcHHHHHHHHHHHcCC---------C
Confidence 3579999999999999988765443 455556554 577999999999999999999999864 3
Q ss_pred EEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc
Q 014376 231 LVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK 310 (426)
Q Consensus 231 ~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~ 310 (426)
++.+++.++.+.+.++..+.++.+|+.+.. ..|+++++||+|.+...+... ......+..+.++..|++..
T Consensus 72 ~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~-----~~p~i~~~Deid~~~~~r~~~----~~~~~~~~~~~~l~~Lsgg~ 142 (274)
T 2x8a_A 72 FISVKGPELLNMYVGESERAVRQVFQRAKN-----SAPCVIFFDEVDALCPRRSDR----ETGASVRVVNQLLTEMDGLE 142 (274)
T ss_dssp EEEEETTTTCSSTTHHHHHHHHHHHHHHHH-----TCSEEEEEETCTTTCC-------------CTTHHHHHHHHHHTCC
T ss_pred EEEEEcHHHHhhhhhHHHHHHHHHHHHHHh-----cCCCeEeeehhhhhhcccCCC----cchHHHHHHHHHHHhhhccc
Confidence 589999999988888888899999998865 378999999999876544221 11122367789999999988
Q ss_pred CCCcEEEEEEeCCCCcCCHHHhc--ccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHH--hhc
Q 014376 311 SSPNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSIL--KEK 386 (426)
Q Consensus 311 ~~~~viVi~TtN~~~~ld~al~~--R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~--~~~ 386 (426)
....+++++++|.++.+|+++++ ||+..++++.|+.++|.+||+.+++... ........++..++.. ++|
T Consensus 143 ~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~------~~~~~~~~~~~~la~~~~~~g 216 (274)
T 2x8a_A 143 ARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGT------KPPLDADVNLEAIAGDLRCDC 216 (274)
T ss_dssp STTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTB------TTBBCTTCCHHHHHTCSGGGS
T ss_pred ccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhccc------CCCCccccCHHHHHHhhccCC
Confidence 88899999999999999999996 9999999999999999999998765311 0112345678888876 459
Q ss_pred cCchHHHHhhhh
Q 014376 387 LSNPDIQEADRS 398 (426)
Q Consensus 387 ~s~~di~~~~~~ 398 (426)
|+++||+..|+.
T Consensus 217 ~sgadl~~l~~~ 228 (274)
T 2x8a_A 217 YTGADLSALVRE 228 (274)
T ss_dssp CCHHHHHHHHHH
T ss_pred cCHHHHHHHHHH
Confidence 999999998754
No 14
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.93 E-value=6.5e-25 Score=208.62 Aligned_cols=216 Identities=21% Similarity=0.359 Sum_probs=170.0
Q ss_pred ccchhhhhhhchhhHHHHHHHHHHH---HHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcc
Q 014376 153 EFDGMWESLIYESGLKQRLLHYAAS---ALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQC 229 (426)
Q Consensus 153 ~~~~~~~~lv~~~~~k~~L~~~~~~---~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~ 229 (426)
.....|++++|.+++|+.+.+.+.. +..+...|.. .+++++|+||||||||++++++|+.++.++
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~vll~G~~GtGKT~la~~la~~~~~~~------- 73 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGK-----IPKGVLMVGPPGTGKTLLAKAIAGEAKVPF------- 73 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----C-----CCCEEEEECCTTSCHHHHHHHHHHHHTCCE-------
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCC-----CCCeEEEECcCCCCHHHHHHHHHHHcCCCE-------
Confidence 3446799999999999998876543 1222223332 257899999999999999999999986544
Q ss_pred eEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhh
Q 014376 230 QLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL 309 (426)
Q Consensus 230 ~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l 309 (426)
+.+++.++...+.++..+.+..+|+.+.. ..+++++|||+|.+...++..+.++. ....+.++.++..++.+
T Consensus 74 --~~i~~~~~~~~~~~~~~~~~~~~~~~a~~-----~~~~il~iDeid~l~~~~~~~~~~~~-~~~~~~~~~ll~~l~~~ 145 (257)
T 1lv7_A 74 --FTISGSDFVEMFVGVGASRVRDMFEQAKK-----AAPCIIFIDEIDAVGRQRGAGLGGGH-DEREQTLNQMLVEMDGF 145 (257)
T ss_dssp --EEECSCSSTTSCCCCCHHHHHHHHHHHHT-----TCSEEEEETTHHHHTCCCSTTSCCTT-CHHHHHHHHHHHHHHTC
T ss_pred --EEEeHHHHHHHhhhhhHHHHHHHHHHHHH-----cCCeeehhhhhhhhccCCCCCcCCCc-hHHHHHHHHHHHHhhCc
Confidence 88999999888888888888999988764 46899999999999876655443332 33456788999999988
Q ss_pred cCCCcEEEEEEeCCCCcCCHHHhc--ccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhcc
Q 014376 310 KSSPNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKL 387 (426)
Q Consensus 310 ~~~~~viVi~TtN~~~~ld~al~~--R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~ 387 (426)
....+++||+|||.++.+|+++++ ||+..++++.|+.++|.+|++.+++... .....++..++..+.|+
T Consensus 146 ~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~---------l~~~~~~~~la~~~~G~ 216 (257)
T 1lv7_A 146 EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP---------LAPDIDAAIIARGTPGF 216 (257)
T ss_dssp CSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC---------BCTTCCHHHHHHTCTTC
T ss_pred ccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC---------CCccccHHHHHHHcCCC
Confidence 877889999999999999999986 9999999999999999999988765421 12344567788889999
Q ss_pred CchHHHHhhh
Q 014376 388 SNPDIQEADR 397 (426)
Q Consensus 388 s~~di~~~~~ 397 (426)
++++++..+.
T Consensus 217 ~~~dl~~l~~ 226 (257)
T 1lv7_A 217 SGADLANLVN 226 (257)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999987753
No 15
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.93 E-value=9.4e-25 Score=210.27 Aligned_cols=214 Identities=27% Similarity=0.412 Sum_probs=172.9
Q ss_pred chhhhhhhchhhHHHHHHHHHHHHH----HHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcce
Q 014376 155 DGMWESLIYESGLKQRLLHYAASAL----MFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQ 230 (426)
Q Consensus 155 ~~~~~~lv~~~~~k~~L~~~~~~~~----~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~ 230 (426)
...|++++|.+++++.|.+++..+. .+...|..+ ++++||+||||||||++|+++|+.++.++
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~ll~G~~GtGKT~la~~la~~~~~~~-------- 79 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEP-----PKGILLYGPPGTGKTLLAKAVATETNATF-------- 79 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCC-----CSEEEEESSSSSSHHHHHHHHHHHTTCEE--------
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCC-----CCeEEEECCCCCcHHHHHHHHHHHhCCCE--------
Confidence 3468999999999999998876543 444556554 68899999999999999999999986554
Q ss_pred EEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc
Q 014376 231 LVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK 310 (426)
Q Consensus 231 ~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~ 310 (426)
+.+++.++...+.+.....+..+|..+.. ..+++|+|||+|.+..++.+...++ .......+..++..++.+.
T Consensus 80 -~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~vl~iDEid~l~~~~~~~~~~~-~~~~~~~l~~ll~~~~~~~ 152 (285)
T 3h4m_A 80 -IRVVGSELVKKFIGEGASLVKDIFKLAKE-----KAPSIIFIDEIDAIAAKRTDALTGG-DREVQRTLMQLLAEMDGFD 152 (285)
T ss_dssp -EEEEGGGGCCCSTTHHHHHHHHHHHHHHH-----TCSEEEEEETTHHHHBCCSSSCCGG-GGHHHHHHHHHHHHHHTTC
T ss_pred -EEEehHHHHHhccchHHHHHHHHHHHHHH-----cCCeEEEEECHHHhcccCccccCCc-cHHHHHHHHHHHHHhhCCC
Confidence 88999999999999888888999988776 4789999999999987654332222 1233456666777777777
Q ss_pred CCCcEEEEEEeCCCCcCCHHHhc--ccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhccC
Q 014376 311 SSPNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLS 388 (426)
Q Consensus 311 ~~~~viVi~TtN~~~~ld~al~~--R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~s 388 (426)
...+++||+|+|.++.+|+++++ ||+..+++++|+.++|.+|++.++.... .....++..++..+.|++
T Consensus 153 ~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~---------~~~~~~~~~l~~~~~g~~ 223 (285)
T 3h4m_A 153 ARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMN---------LAEDVNLEEIAKMTEGCV 223 (285)
T ss_dssp SSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSC---------BCTTCCHHHHHHHCTTCC
T ss_pred CCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCC---------CCCcCCHHHHHHHcCCCC
Confidence 77889999999999999999997 9999999999999999999988765431 224456889999999999
Q ss_pred chHHHHhhh
Q 014376 389 NPDIQEADR 397 (426)
Q Consensus 389 ~~di~~~~~ 397 (426)
+++++.+++
T Consensus 224 ~~~i~~l~~ 232 (285)
T 3h4m_A 224 GAELKAICT 232 (285)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987754
No 16
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.93 E-value=7.3e-25 Score=225.61 Aligned_cols=216 Identities=23% Similarity=0.342 Sum_probs=172.7
Q ss_pred cchhhhhhhchhhHHHHHHHHHHH---HHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcce
Q 014376 154 FDGMWESLIYESGLKQRLLHYAAS---ALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQ 230 (426)
Q Consensus 154 ~~~~~~~lv~~~~~k~~L~~~~~~---~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~ 230 (426)
....|++++|.+++|+.+.+.+.. +..|...|... +++++|+||||||||++++++|+.++.++
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~-----p~gvLL~GppGtGKT~Laraia~~~~~~f-------- 77 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARM-----PKGILLVGPPGTGKTLLARAVAGEANVPF-------- 77 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCC-----CSEEEEECCTTSSHHHHHHHHHHHHTCCE--------
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCC-----CCeEEEECCCCCCHHHHHHHHHHHcCCCe--------
Confidence 345689999999999998877543 33445555443 57899999999999999999999997655
Q ss_pred EEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc
Q 014376 231 LVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK 310 (426)
Q Consensus 231 ~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~ 310 (426)
+.+++.++...+.+.....++.+|..+.. ..|++|||||+|.+..+++..+.++. ....+.++.|+..|+++.
T Consensus 78 -~~is~~~~~~~~~g~~~~~~r~lf~~A~~-----~~p~ILfIDEid~l~~~r~~~~~g~~-~~~~~~l~~LL~~ld~~~ 150 (476)
T 2ce7_A 78 -FHISGSDFVELFVGVGAARVRDLFAQAKA-----HAPCIVFIDEIDAVGRHRGAGLGGGH-DEREQTLNQLLVEMDGFD 150 (476)
T ss_dssp -EEEEGGGTTTCCTTHHHHHHHHHHHHHHH-----TCSEEEEEETGGGTCCC----------CHHHHHHHHHHHHHHHSC
T ss_pred -eeCCHHHHHHHHhcccHHHHHHHHHHHHh-----cCCCEEEEechhhhhhhcccccCcCc-HHHHHHHHHHHHHHhccC
Confidence 88999999988888888888999998876 58999999999999877654443332 344678899999999887
Q ss_pred CCCcEEEEEEeCCCCcCCHHHhc--ccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhccC
Q 014376 311 SSPNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLS 388 (426)
Q Consensus 311 ~~~~viVi~TtN~~~~ld~al~~--R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~s 388 (426)
...+++||++||.++.+|+++++ ||+..++++.|+.++|.+|++.+++... .....++..++..+.|++
T Consensus 151 ~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~---------l~~~v~l~~la~~t~G~s 221 (476)
T 2ce7_A 151 SKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP---------LAEDVNLEIIAKRTPGFV 221 (476)
T ss_dssp GGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC---------BCTTCCHHHHHHTCTTCC
T ss_pred CCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC---------CcchhhHHHHHHhcCCCc
Confidence 77889999999999999999985 9999999999999999999987775421 123456888999999999
Q ss_pred chHHHHhhhh
Q 014376 389 NPDIQEADRS 398 (426)
Q Consensus 389 ~~di~~~~~~ 398 (426)
++|+++.++.
T Consensus 222 gadL~~lv~~ 231 (476)
T 2ce7_A 222 GADLENLVNE 231 (476)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888654
No 17
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.93 E-value=6.1e-25 Score=208.52 Aligned_cols=216 Identities=25% Similarity=0.357 Sum_probs=157.2
Q ss_pred hhhhhhhchhhHHHHHHHHHHHH---HHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEE
Q 014376 156 GMWESLIYESGLKQRLLHYAASA---LMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLV 232 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~---~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i 232 (426)
..|++++|.+++|+.|.+++... ..|...|.. .+++++|+||||||||++|+++|+.++.++ +
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~-----~~~~vll~G~~GtGKT~la~~la~~~~~~~---------~ 68 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAK-----VPKGALLLGPPGCGKTLLAKAVATEAQVPF---------L 68 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC------CC-----CCCEEEEESCTTSSHHHHHHHHHHHHTCCE---------E
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCC-----CCceEEEECCCCCCHHHHHHHHHHHhCCCE---------E
Confidence 35889999999999998876531 123333433 368899999999999999999999986554 8
Q ss_pred EEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCC
Q 014376 233 EVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS 312 (426)
Q Consensus 233 ~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~ 312 (426)
.+++.++...+.+.....+..+|..+.. ..+++|+|||+|.+...+.....+.........++.++..++.+...
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~-----~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 143 (262)
T 2qz4_A 69 AMAGAEFVEVIGGLGAARVRSLFKEARA-----RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT 143 (262)
T ss_dssp EEETTTTSSSSTTHHHHHHHHHHHHHHH-----TCSEEEEEECC-------------------CHHHHHHHHHHHTCCTT
T ss_pred EechHHHHhhccChhHHHHHHHHHHHHh-----cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC
Confidence 8999999888888888888888888765 46899999999999877654433333334456778888888887777
Q ss_pred CcEEEEEEeCCCCcCCHHHhc--ccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhccCch
Q 014376 313 PNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNP 390 (426)
Q Consensus 313 ~~viVi~TtN~~~~ld~al~~--R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~s~~ 390 (426)
.+++||+|+|.++.+|+++++ ||+..+++++|+.++|.+|++.++..... .......+..++..+.|++++
T Consensus 144 ~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-------~~~~~~~~~~l~~~~~g~~~~ 216 (262)
T 2qz4_A 144 DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL-------TQSSTFYSQRLAELTPGFSGA 216 (262)
T ss_dssp CCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC-------CBTHHHHHHHHHHTCTTCCHH
T ss_pred CCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC-------CcchhhHHHHHHHHCCCCCHH
Confidence 889999999999999999997 99999999999999999999999876421 111111246788888999999
Q ss_pred HHHHhhh
Q 014376 391 DIQEADR 397 (426)
Q Consensus 391 di~~~~~ 397 (426)
+++..++
T Consensus 217 ~l~~l~~ 223 (262)
T 2qz4_A 217 DIANICN 223 (262)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9877653
No 18
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.93 E-value=1.6e-25 Score=229.92 Aligned_cols=228 Identities=26% Similarity=0.379 Sum_probs=170.8
Q ss_pred cchhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEE
Q 014376 154 FDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVE 233 (426)
Q Consensus 154 ~~~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~ 233 (426)
....|++++|.+++|+.|.+.+..+..+...- . -....++++||+||||||||++|+++|+.+. +..++.
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~-~-~~~~~~~~vLL~GppGtGKT~lA~aia~~~~--------~~~~~~ 198 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLF-T-GKRTPWRGILLFGPPGTGKSYLAKAVATEAN--------NSTFFS 198 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTT-S-GGGCCCSEEEEECSTTSSHHHHHHHHHHHCC--------SSEEEE
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHh-h-ccCCCCceEEEECCCCCCHHHHHHHHHHHcC--------CCCEEE
Confidence 34579999999999999999887665544320 0 0112358899999999999999999999981 234589
Q ss_pred EeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcC-C
Q 014376 234 VNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS-S 312 (426)
Q Consensus 234 i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~-~ 312 (426)
+++.++.++|.++..+.+..+|..+.. ..++||||||+|.+...+.. ++.....++++.++..++++.. .
T Consensus 199 v~~~~l~~~~~g~~~~~~~~~f~~a~~-----~~~~vl~iDEid~l~~~~~~----~~~~~~~~~~~~lL~~l~~~~~~~ 269 (444)
T 2zan_A 199 ISSSDLVSKWLGESEKLVKNLFQLARE-----NKPSIIFIDEIDSLCGSRSE----NESEAARRIKTEFLVQMQGVGVDN 269 (444)
T ss_dssp ECCC---------CCCTHHHHHHHHHH-----SCSEEEEESCTTTTCCCSSC----CCCGGGHHHHHHHHTTTTCSSCCC
T ss_pred EeHHHHHhhhcchHHHHHHHHHHHHHH-----cCCeEEEEechHhhccCCCC----ccccHHHHHHHHHHHHHhCcccCC
Confidence 999999999999988889999988775 57899999999999765432 2334456888999999988753 5
Q ss_pred CcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhccCchHH
Q 014376 313 PNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDI 392 (426)
Q Consensus 313 ~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~s~~di 392 (426)
.+++||+|||.++.+|+++++||+..++++.|+.++|..|++.++.... . .....++..++..++||+++||
T Consensus 270 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~----~----~l~~~~l~~la~~t~G~sgadl 341 (444)
T 2zan_A 270 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQ----N----SLTEADFQELGRKTDGYSGADI 341 (444)
T ss_dssp SSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSC----E----ECCHHHHHHHHHHTTTCCHHHH
T ss_pred CCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCC----C----CCCHHHHHHHHHHcCCCCHHHH
Confidence 7899999999999999999999999999999999999999998875421 0 1234567899999999999999
Q ss_pred HHhhhhHHHHHHHHHHH
Q 014376 393 QEADRSQHFYKQLLEAA 409 (426)
Q Consensus 393 ~~~~~~~~~~~~L~~~a 409 (426)
...++. +...++.+..
T Consensus 342 ~~l~~~-a~~~a~r~~~ 357 (444)
T 2zan_A 342 SIIVRD-ALMQPVRKVQ 357 (444)
T ss_dssp HHHHHH-HHTHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHH
Confidence 988754 3333444443
No 19
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.91 E-value=5e-24 Score=220.69 Aligned_cols=210 Identities=27% Similarity=0.363 Sum_probs=176.5
Q ss_pred hhhhhhhchhhHHHHHHHHHHHH----HHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceE
Q 014376 156 GMWESLIYESGLKQRLLHYAASA----LMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQL 231 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~----~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~ 231 (426)
..|++++|.+..++.|.+++..+ ..|...|..+ ++++||+||||||||++|+++++.++.+ +
T Consensus 201 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~-----~~~vLL~GppGtGKT~lAraia~~~~~~---------f 266 (489)
T 3hu3_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKP-----PRGILLYGPPGTGKTLIARAVANETGAF---------F 266 (489)
T ss_dssp CCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCC-----CCEEEEECSTTSSHHHHHHHHHHHCSSE---------E
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCC-----CCcEEEECcCCCCHHHHHHHHHHHhCCC---------E
Confidence 45899999999999998887654 4555566554 6889999999999999999999998654 4
Q ss_pred EEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcC
Q 014376 232 VEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS 311 (426)
Q Consensus 232 i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~ 311 (426)
+.+++.++.+.++++....+..+|..+.. ..|++|||||+|.+..++.. .......++++.|++.|+.+..
T Consensus 267 v~vn~~~l~~~~~g~~~~~~~~~f~~A~~-----~~p~iLfLDEId~l~~~~~~----~~~~~~~~~~~~LL~~ld~~~~ 337 (489)
T 3hu3_A 267 FLINGPEIMSKLAGESESNLRKAFEEAEK-----NAPAIIFIDELDAIAPKREK----THGEVERRIVSQLLTLMDGLKQ 337 (489)
T ss_dssp EEEEHHHHHTSCTTHHHHHHHHHHHHHHH-----TCSEEEEEESHHHHCBCTTS----CCCHHHHHHHHHHHHHHHHSCT
T ss_pred EEEEchHhhhhhcchhHHHHHHHHHHHHh-----cCCcEEEecchhhhcccccc----ccchHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999998876 57899999999999875532 1223456889999999999888
Q ss_pred CCcEEEEEEeCCCCcCCHHHhc--ccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhccCc
Q 014376 312 SPNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSN 389 (426)
Q Consensus 312 ~~~viVi~TtN~~~~ld~al~~--R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~s~ 389 (426)
..+++||+|||.++.+|+++++ ||+..++++.|+.++|.+|++.+++... .....++..++..+.|+++
T Consensus 338 ~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~---------l~~~~~l~~la~~t~g~s~ 408 (489)
T 3hu3_A 338 RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK---------LADDVDLEQVANETHGHVG 408 (489)
T ss_dssp TSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSC---------BCTTCCHHHHHHTCTTCCH
T ss_pred CCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCC---------CcchhhHHHHHHHccCCcH
Confidence 8899999999999999999997 9999999999999999999998765431 2344578899999999999
Q ss_pred hHHHHhhh
Q 014376 390 PDIQEADR 397 (426)
Q Consensus 390 ~di~~~~~ 397 (426)
+++..++.
T Consensus 409 ~dL~~L~~ 416 (489)
T 3hu3_A 409 ADLAALCS 416 (489)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988754
No 20
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.91 E-value=1.8e-23 Score=208.71 Aligned_cols=216 Identities=24% Similarity=0.338 Sum_probs=169.1
Q ss_pred chhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEE
Q 014376 155 DGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEV 234 (426)
Q Consensus 155 ~~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i 234 (426)
...|++++|.+++++.|.+.+..+...... +.. ....++++||+||||||||++|+++|+.++.+ ++.+
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~-~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~---------~~~i 148 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDI-FTG-LRGPPKGILLFGPPGTGKTLIGKCIASQSGAT---------FFSI 148 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTT-SCG-GGSCCSEEEEESSTTSSHHHHHHHHHHHTTCE---------EEEE
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhChHh-Hhh-ccCCCceEEEECCCCCCHHHHHHHHHHHcCCe---------EEEE
Confidence 457999999999999999998765544331 000 11235789999999999999999999998654 4899
Q ss_pred eccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcC--C
Q 014376 235 NAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS--S 312 (426)
Q Consensus 235 ~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~--~ 312 (426)
++.++.+++.++..+.+..+|..+.. ..+++|||||+|.+...+.. +......+.++.++..++++.. .
T Consensus 149 ~~~~l~~~~~g~~~~~~~~~~~~a~~-----~~~~vl~iDEid~l~~~~~~----~~~~~~~~~~~~lL~~l~~~~~~~~ 219 (357)
T 3d8b_A 149 SASSLTSKWVGEGEKMVRALFAVARC-----QQPAVIFIDEIDSLLSQRGD----GEHESSRRIKTEFLVQLDGATTSSE 219 (357)
T ss_dssp EGGGGCCSSTTHHHHHHHHHHHHHHH-----TCSEEEEEETHHHHTBC----------CHHHHHHHHHHHHHHC----CC
T ss_pred ehHHhhccccchHHHHHHHHHHHHHh-----cCCeEEEEeCchhhhccCCC----CcchHHHHHHHHHHHHHhcccccCC
Confidence 99999999999988888888888765 47899999999999765432 2233456788899999987643 4
Q ss_pred CcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhccCchHH
Q 014376 313 PNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDI 392 (426)
Q Consensus 313 ~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~s~~di 392 (426)
.+++||+|||.++.+++++++||+..++++.|+.++|.++++.++.... . ......+..++..++|++++++
T Consensus 220 ~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~----~----~l~~~~l~~la~~t~G~s~~dl 291 (357)
T 3d8b_A 220 DRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQ----C----CLSEEEIEQIVQQSDAFSGADM 291 (357)
T ss_dssp CCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSC----B----CCCHHHHHHHHHHTTTCCHHHH
T ss_pred CCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcC----C----CccHHHHHHHHHHcCCCCHHHH
Confidence 6799999999999999999999999999999999999999998876531 0 1223457788999999999999
Q ss_pred HHhhhh
Q 014376 393 QEADRS 398 (426)
Q Consensus 393 ~~~~~~ 398 (426)
..++..
T Consensus 292 ~~l~~~ 297 (357)
T 3d8b_A 292 TQLCRE 297 (357)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988653
No 21
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.91 E-value=2.7e-23 Score=201.39 Aligned_cols=215 Identities=27% Similarity=0.366 Sum_probs=167.0
Q ss_pred chhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEE
Q 014376 155 DGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEV 234 (426)
Q Consensus 155 ~~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i 234 (426)
...|++++|.+++++.|.+.+..+..+...-. .. -..+++++|+||||||||++|+++|+.++.+ ++.+
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~-~~-~~~~~~vll~Gp~GtGKT~la~~la~~~~~~---------~~~i 85 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFT-GL-RAPAKGLLLFGPPGNGKTLLARAVATECSAT---------FLNI 85 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSC-GG-GCCCSEEEEESSSSSCHHHHHHHHHHHTTCE---------EEEE
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHh-cC-CCCCCeEEEECcCCCCHHHHHHHHHHHhCCC---------eEEe
Confidence 45799999999999999998876655433110 00 1125789999999999999999999998654 4899
Q ss_pred eccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCC--
Q 014376 235 NAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS-- 312 (426)
Q Consensus 235 ~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~-- 312 (426)
++.++.+.+.++....+..+|..+.. ..+++|+|||+|.+...+... ......+..+.++..++.+...
T Consensus 86 ~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~vl~iDEid~l~~~~~~~----~~~~~~~~~~~ll~~l~~~~~~~~ 156 (297)
T 3b9p_A 86 SAASLTSKYVGDGEKLVRALFAVARH-----MQPSIIFIDEVDSLLSERSSS----EHEASRRLKTEFLVEFDGLPGNPD 156 (297)
T ss_dssp ESTTTSSSSCSCHHHHHHHHHHHHHH-----TCSEEEEEETGGGTSBCC---------CCSHHHHHHHHHHHHHCC----
T ss_pred eHHHHhhcccchHHHHHHHHHHHHHH-----cCCcEEEeccHHHhccccccC----cchHHHHHHHHHHHHHhcccccCC
Confidence 99999999999888888888888765 478999999999997654321 1223356778899998876543
Q ss_pred -CcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhccCchH
Q 014376 313 -PNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPD 391 (426)
Q Consensus 313 -~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~s~~d 391 (426)
.+++||++||.++.+++++++||+..++++.|+.++|..|++.++.... . ......+..++..+.|+++++
T Consensus 157 ~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~---~-----~~~~~~~~~la~~~~g~~~~~ 228 (297)
T 3b9p_A 157 GDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQG---S-----PLDTEALRRLAKITDGYSGSD 228 (297)
T ss_dssp --CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGS---C-----CSCHHHHHHHHHHTTTCCHHH
T ss_pred CCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcC---C-----CCCHHHHHHHHHHcCCCCHHH
Confidence 5799999999999999999999999999999999999999998876531 0 112335678889999999999
Q ss_pred HHHhhh
Q 014376 392 IQEADR 397 (426)
Q Consensus 392 i~~~~~ 397 (426)
+...++
T Consensus 229 l~~l~~ 234 (297)
T 3b9p_A 229 LTALAK 234 (297)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987754
No 22
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.90 E-value=3.8e-23 Score=208.56 Aligned_cols=214 Identities=28% Similarity=0.363 Sum_probs=160.3
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEe
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVN 235 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~ 235 (426)
..|++++|.+.+++.|.+++..+.......- . .-..++++||+||||||||++|+++|+.++.++ +.++
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~-~-~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~---------~~v~ 180 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFT-G-LRAPARGLLLFGPPGNGKTMLAKAVAAESNATF---------FNIS 180 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSC-G-GGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEE---------EEEC
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhc-c-cCCCCceEEEECCCCCCHHHHHHHHHHhhcCcE---------EEee
Confidence 4699999999999999999876655333110 0 011257899999999999999999999986554 9999
Q ss_pred ccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcC--CC
Q 014376 236 AHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS--SP 313 (426)
Q Consensus 236 ~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~--~~ 313 (426)
+..+.+.+.++....+..+|..+.. ..+++|||||+|.+...+.. +......++++.++..++++.. ..
T Consensus 181 ~~~l~~~~~g~~~~~~~~~~~~a~~-----~~~~il~iDEid~l~~~~~~----~~~~~~~~~~~~ll~~l~~~~~~~~~ 251 (389)
T 3vfd_A 181 AASLTSKYVGEGEKLVRALFAVARE-----LQPSIIFIDQVDSLLCERRE----GEHDASRRLKTEFLIEFDGVQSAGDD 251 (389)
T ss_dssp SCCC-------CHHHHHHHHHHHHH-----SSSEEEEEETGGGGC------------CTHHHHHHHHHHHHHHHC-----
T ss_pred HHHhhccccchHHHHHHHHHHHHHh-----cCCeEEEEECchhhcccCCC----ccchHHHHHHHHHHHHhhcccccCCC
Confidence 9999999999998889999988876 47899999999999765532 2233456788899999998765 46
Q ss_pred cEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhccCchHHH
Q 014376 314 NVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQ 393 (426)
Q Consensus 314 ~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~s~~di~ 393 (426)
+++||+|||.++.+++++++||+..++++.|+.++|.+|++.++.... .......+..++..+.|+++.++.
T Consensus 252 ~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~--------~~l~~~~~~~la~~~~g~~~~~l~ 323 (389)
T 3vfd_A 252 RVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQG--------SPLTQKELAQLARMTDGYSGSDLT 323 (389)
T ss_dssp CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSC--------CCSCHHHHHHHHHHTTTCCHHHHH
T ss_pred CEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcC--------CCCCHHHHHHHHHHcCCCCHHHHH
Confidence 799999999999999999999999999999999999999988775521 012223567888999999999988
Q ss_pred Hhhh
Q 014376 394 EADR 397 (426)
Q Consensus 394 ~~~~ 397 (426)
.++.
T Consensus 324 ~L~~ 327 (389)
T 3vfd_A 324 ALAK 327 (389)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7754
No 23
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.90 E-value=9e-23 Score=193.49 Aligned_cols=215 Identities=20% Similarity=0.338 Sum_probs=163.2
Q ss_pred cchhhhhhhchhhHHHHHHHHHHH---HHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcce
Q 014376 154 FDGMWESLIYESGLKQRLLHYAAS---ALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQ 230 (426)
Q Consensus 154 ~~~~~~~lv~~~~~k~~L~~~~~~---~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~ 230 (426)
+...|++++|.++++..+.+.... ...+...++.. +++++|+||||||||||++++++.++. +
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~-----~~g~ll~G~~G~GKTtl~~~i~~~~~~---------~ 76 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARI-----PKGVLLVGPPGVGKTHLARAVAGEARV---------P 76 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCC-----CSEEEEECCTTSSHHHHHHHHHHHTTC---------C
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCC-----CCeEEEECCCCCCHHHHHHHHHHHhCC---------C
Confidence 345789999999998888776543 22344444433 567999999999999999999998853 4
Q ss_pred EEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc
Q 014376 231 LVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK 310 (426)
Q Consensus 231 ~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~ 310 (426)
++.+++.++...+.+...+.+..+|+.+.. ..++++++||+|.+...+.... +.......+.++.++..+++..
T Consensus 77 ~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~i~~~Deid~l~~~~~~~~-~~~~~~~~~~~~~ll~~l~g~~ 150 (254)
T 1ixz_A 77 FITASGSDFVEMFVGVGAARVRDLFETAKR-----HAPCIVFIDEIDAVGRKRGSGV-GGGNDEREQTLNQLLVEMDGFE 150 (254)
T ss_dssp EEEEEHHHHHHSCTTHHHHHHHHHHHHHTT-----SSSEEEEEETHHHHHC----------CHHHHHHHHHHHHHHHTCC
T ss_pred EEEeeHHHHHHHHhhHHHHHHHHHHHHHHh-----cCCeEEEehhhhhhhcccCccc-cccchHHHHHHHHHHHHHhCCC
Confidence 588898888777777777778888887653 3679999999999876553211 1112234567888999999877
Q ss_pred CCCcEEEEEEeCCCCcCCHHHhc--ccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhccC
Q 014376 311 SSPNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLS 388 (426)
Q Consensus 311 ~~~~viVi~TtN~~~~ld~al~~--R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~s 388 (426)
....+++++++|.++.+|+++++ ||+..++++.|+.++|.+|++.+++.. ......++..++..++|++
T Consensus 151 ~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~---------~~~~~~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 151 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK---------PLAEDVDLALLAKRTPGFV 221 (254)
T ss_dssp TTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTS---------CBCTTCCHHHHHHTCTTCC
T ss_pred CCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCC---------CCCcccCHHHHHHHcCCCC
Confidence 77789999999999999999996 899999999999999999998765331 1234456888999999999
Q ss_pred chHHHHhhh
Q 014376 389 NPDIQEADR 397 (426)
Q Consensus 389 ~~di~~~~~ 397 (426)
++|++.++.
T Consensus 222 ~~dl~~~~~ 230 (254)
T 1ixz_A 222 GADLENLLN 230 (254)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988753
No 24
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.89 E-value=2.6e-22 Score=194.93 Aligned_cols=176 Identities=18% Similarity=0.260 Sum_probs=131.0
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEE
Q 014376 192 SWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFV 271 (426)
Q Consensus 192 ~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~il 271 (426)
..++++|||||||||||++|+++|+.++.++ +.+++.++.++|.++....+..+|..+..... ...++||
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~~---------i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~-~~~~~vl 103 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGINP---------IMMSAGELESGNAGEPAKLIRQRYREAAEIIR-KGNMCCL 103 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCCC---------EEEEHHHHHCC---HHHHHHHHHHHHHHHHHT-TSSCCCE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCE---------EEEeHHHhhhccCchhHHHHHHHHHHHHHHHh-cCCCeEE
Confidence 3468999999999999999999999997665 99999999999999999999999999865443 4678999
Q ss_pred EEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc-----------CCCcEEEEEEeCCCCcCCHHHh--cccCeE
Q 014376 272 LIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK-----------SSPNVIILTTSNITAAIDIAFV--DRADIK 338 (426)
Q Consensus 272 lIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~-----------~~~~viVi~TtN~~~~ld~al~--~R~~~~ 338 (426)
+|||+|.+...+.+... .......+.+.|++.||... ...+++||+|||.++.+|++++ +||+..
T Consensus 104 ~iDEiD~~~~~~~~~~~--~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~ 181 (293)
T 3t15_A 104 FINDLDAGAGRMGGTTQ--YTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKF 181 (293)
T ss_dssp EEECCC----------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEE
T ss_pred EEechhhhcCCCCCCcc--ccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCcee
Confidence 99999999875432111 11234567788999988432 4568999999999999999998 599888
Q ss_pred EEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhccCchHHHH
Q 014376 339 AYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQE 394 (426)
Q Consensus 339 i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~s~~di~~ 394 (426)
++ .|+.++|.+|++.++.. .......++.++++++++++.-
T Consensus 182 i~--~P~~~~r~~Il~~~~~~-------------~~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 182 YW--APTREDRIGVCTGIFRT-------------DNVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp EE--CCCHHHHHHHHHHHHGG-------------GCCCHHHHHHHHHHSCSCCHHH
T ss_pred Ee--CcCHHHHHHHHHHhccC-------------CCCCHHHHHHHhCCCCcccHHH
Confidence 87 46999999999866542 2345788999999999998764
No 25
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.89 E-value=7.8e-25 Score=209.10 Aligned_cols=215 Identities=25% Similarity=0.369 Sum_probs=156.7
Q ss_pred cchhhhhhhchhhHHHHHHHHHHH---HHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcce
Q 014376 154 FDGMWESLIYESGLKQRLLHYAAS---ALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQ 230 (426)
Q Consensus 154 ~~~~~~~lv~~~~~k~~L~~~~~~---~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~ 230 (426)
....|++++|.+++++.|.+.+.. +..|...+... +++++|+||||||||++|+++|+.++.++
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~vll~G~~GtGKT~la~~la~~~~~~~-------- 72 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKI-----PKGVLLVGPPGTGKTLLAKAVAGEAHVPF-------- 72 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCC-----CSCCCCBCSSCSSHHHHHHHHHHHHTCCC--------
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCC-----CceEEEECCCCCcHHHHHHHHHHHhCCCE--------
Confidence 345689999999999998876553 33444445443 56799999999999999999999997655
Q ss_pred EEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc
Q 014376 231 LVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK 310 (426)
Q Consensus 231 ~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~ 310 (426)
+.+++.++...+.+.....+..+|..+.. ..+++|+|||+|.+...+.............+.++.++..++...
T Consensus 73 -~~v~~~~~~~~~~~~~~~~~~~~~~~a~~-----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (268)
T 2r62_A 73 -FSMGGSSFIEMFVGLGASRVRDLFETAKK-----QAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG 146 (268)
T ss_dssp -CCCCSCTTTTSCSSSCSSSSSTTHHHHHH-----SCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSS
T ss_pred -EEechHHHHHhhcchHHHHHHHHHHHHHh-----cCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcc
Confidence 66788888777777666666677777765 467999999999997654321111111222345567777777654
Q ss_pred C-CCcEEEEEEeCCCCcCCHHHhc--ccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhcc
Q 014376 311 S-SPNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKL 387 (426)
Q Consensus 311 ~-~~~viVi~TtN~~~~ld~al~~--R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~ 387 (426)
. ..+++||+|||.++.+|+++++ ||+..++++.|+.++|.++++.+++... .....++..++..+.|+
T Consensus 147 ~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~---------~~~~~~~~~la~~~~g~ 217 (268)
T 2r62_A 147 SENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVK---------LANDVNLQEVAKLTAGL 217 (268)
T ss_dssp CSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSC---------CCSSCCTTTTTSSSCSS
T ss_pred cCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCC---------CCCccCHHHHHHHcCCC
Confidence 3 3458999999999999999997 9999999999999999999987765321 12334567778888999
Q ss_pred CchHHHHhh
Q 014376 388 SNPDIQEAD 396 (426)
Q Consensus 388 s~~di~~~~ 396 (426)
+++++++.+
T Consensus 218 ~g~dl~~l~ 226 (268)
T 2r62_A 218 AGADLANII 226 (268)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 998887664
No 26
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.89 E-value=1e-21 Score=189.03 Aligned_cols=215 Identities=20% Similarity=0.338 Sum_probs=162.5
Q ss_pred cchhhhhhhchhhHHHHHHHHHHH---HHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcce
Q 014376 154 FDGMWESLIYESGLKQRLLHYAAS---ALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQ 230 (426)
Q Consensus 154 ~~~~~~~lv~~~~~k~~L~~~~~~---~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~ 230 (426)
....|+++++.+++++.+.+.... ...+...++.. +++++|+||||||||||++++++.++. +
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~-----~~gvll~Gp~GtGKTtl~~~i~~~~~~---------~ 100 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARI-----PKGVLLVGPPGVGKTHLARAVAGEARV---------P 100 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCC-----CCEEEEECCTTSSHHHHHHHHHHHTTC---------C
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCC-----CCeEEEECCCcChHHHHHHHHHHHcCC---------C
Confidence 345789999999999888876543 22334444432 466999999999999999999998853 4
Q ss_pred EEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc
Q 014376 231 LVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK 310 (426)
Q Consensus 231 ~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~ 310 (426)
++.+++.++...+.+...+.+..+|+.+.. ..++++++||++.+...+.... +.......+.++.++..+++..
T Consensus 101 ~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~i~~iDeid~l~~~~~~~~-~~~~~~~~~~~~~ll~~lsgg~ 174 (278)
T 1iy2_A 101 FITASGSDFVEMFVGVGAARVRDLFETAKR-----HAPCIVFIDEIDAVGRKRGSGV-GGGNDEREQTLNQLLVEMDGFE 174 (278)
T ss_dssp EEEEEHHHHHHSTTTHHHHHHHHHHHHHHT-----SCSEEEEEETHHHHHCC---------CHHHHHHHHHHHHHHTTCC
T ss_pred EEEecHHHHHHHHhhHHHHHHHHHHHHHHh-----cCCcEEehhhhHhhhccccccc-CCcchHHHHHHHHHHHHHhCCC
Confidence 588998887776667777778888888764 3679999999999875443211 1112233567788888888877
Q ss_pred CCCcEEEEEEeCCCCcCCHHHhc--ccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhccC
Q 014376 311 SSPNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLS 388 (426)
Q Consensus 311 ~~~~viVi~TtN~~~~ld~al~~--R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~s 388 (426)
....+++++++|.++.+|+++++ ||+..++++.|+.++|.+|++.+++.. ......++..++..++|++
T Consensus 175 ~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~---------~~~~~~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 175 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK---------PLAEDVDLALLAKRTPGFV 245 (278)
T ss_dssp TTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS---------CBCTTCCHHHHHHTCTTCC
T ss_pred CCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccC---------CCCcccCHHHHHHHcCCCC
Confidence 77789999999999999999986 899999999999999999998765431 1233456788999999999
Q ss_pred chHHHHhhh
Q 014376 389 NPDIQEADR 397 (426)
Q Consensus 389 ~~di~~~~~ 397 (426)
++|++.++.
T Consensus 246 ~~dl~~l~~ 254 (278)
T 1iy2_A 246 GADLENLLN 254 (278)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987753
No 27
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.88 E-value=5.1e-23 Score=213.00 Aligned_cols=215 Identities=20% Similarity=0.335 Sum_probs=168.1
Q ss_pred chhhhhhhchhhHHHHHHHHHHH---HHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceE
Q 014376 155 DGMWESLIYESGLKQRLLHYAAS---ALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQL 231 (426)
Q Consensus 155 ~~~~~~lv~~~~~k~~L~~~~~~---~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~ 231 (426)
...|++++|.+++|..+.+.+.. +..+...|. ..+++++|+||||||||+|++++|+.++. ++
T Consensus 27 ~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~-----~ip~GvLL~GppGtGKTtLaraIa~~~~~---------~~ 92 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGA-----RIPKGVLLVGPPGVGKTHLARAVAGEARV---------PF 92 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSC-----CCCSEEEEECSSSSSHHHHHHHHHHHTTC---------CE
T ss_pred CCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccC-----CCCceEEEECCCCCCHHHHHHHHHHHhCC---------CE
Confidence 45689999999999998877653 122222333 23577999999999999999999999864 45
Q ss_pred EEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcC
Q 014376 232 VEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS 311 (426)
Q Consensus 232 i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~ 311 (426)
+.+++.++...+.+.....++.+|+.+.. ..|++++|||+|.+...+...+. +......+.++.++..|++...
T Consensus 93 i~i~g~~~~~~~~g~~~~~v~~lfq~a~~-----~~p~il~IDEId~l~~~r~~~~~-~~~~e~~~~l~~LL~~Ldg~~~ 166 (499)
T 2dhr_A 93 ITASGSDFVEMFVGVGAARVRDLFETAKR-----HAPCIVFIDEIDAVGRKRGSGVG-GGNDEREQTLNQLLVEMDGFEK 166 (499)
T ss_dssp EEEEGGGGTSSCTTHHHHHHHHHTTTSSS-----SSSCEEEEECGGGTCCCSSSSTT-TSSHHHHHHHHHHHHHGGGCCS
T ss_pred EEEehhHHHHhhhhhHHHHHHHHHHHHHh-----cCCCEEEEehHHHHHHhhccCcC-CCcHHHHHHHHHHHHHhccccc
Confidence 99999999888888877778888877643 36799999999998765432211 1122345778999999998887
Q ss_pred CCcEEEEEEeCCCCcCCHHHhc--ccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhccCc
Q 014376 312 SPNVIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSN 389 (426)
Q Consensus 312 ~~~viVi~TtN~~~~ld~al~~--R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~s~ 389 (426)
...+++++++|.++.+|+++++ ||+..++++.|+.++|.+|++.+++.. ......++..++..+.|+++
T Consensus 167 ~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~---------~l~~dv~l~~lA~~t~G~~g 237 (499)
T 2dhr_A 167 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK---------PLAEDVDLALLAKRTPGFVG 237 (499)
T ss_dssp SCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS---------CCCCSSTTHHHHTTSCSCCH
T ss_pred CccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcC---------CCChHHHHHHHHHhcCCCCH
Confidence 7889999999999999999986 899999999999999999998765321 12345568889999999999
Q ss_pred hHHHHhhhh
Q 014376 390 PDIQEADRS 398 (426)
Q Consensus 390 ~di~~~~~~ 398 (426)
+|++++++.
T Consensus 238 adL~~lv~~ 246 (499)
T 2dhr_A 238 ADLENLLNE 246 (499)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888653
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.87 E-value=6.1e-25 Score=240.50 Aligned_cols=219 Identities=28% Similarity=0.426 Sum_probs=170.4
Q ss_pred chhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEE
Q 014376 155 DGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEV 234 (426)
Q Consensus 155 ~~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i 234 (426)
.-.|+++.+.+++|+.|.+++..+..+.... ..+.+..+++++|+||||||||+||+++|+.++.++ +.+
T Consensus 473 ~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~-~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~---------i~v 542 (806)
T 1ypw_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKF-LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF---------ISI 542 (806)
T ss_dssp CCSSCSSSCCCCHHHHHHTTTTSSSSSCTTT-TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCC---------CCC
T ss_pred cccccccccchhhhhhHHHHHHhhhhchHHH-HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCE---------EEE
Confidence 3469999999999999998876543332211 112334578899999999999999999999997655 788
Q ss_pred eccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCc
Q 014376 235 NAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPN 314 (426)
Q Consensus 235 ~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~ 314 (426)
++.++.++|+++..+.+..+|+.++.. .|+++||||+|.+...+.... +.......+++++|++.|+++....+
T Consensus 543 ~~~~l~~~~~g~~~~~i~~~f~~a~~~-----~p~vl~iDEid~l~~~r~~~~-~~~~~~~~~v~~~LL~~ld~~~~~~~ 616 (806)
T 1ypw_A 543 KGPELLTMWFGESEANVREIFDKARQA-----APCVLFFDELDSIAKARGGNI-GDGGGAADRVINQILTEMDGMSTKKN 616 (806)
T ss_dssp CCSSSTTCCTTTSSHHHHHHHHHHHHH-----CSBCCCCSSHHHHCCTTTTCC-SHHHHHHHHHHHHHHTTCC------C
T ss_pred echHhhhhhcCccHHHHHHHHHHHHhc-----CCeEEEEEChhhhhhhccCCC-CCcchhHHHHHHHHHHHHhcccccCC
Confidence 999999999999999999999999874 789999999999976653210 00012346788999999999888889
Q ss_pred EEEEEEeCCCCcCCHHHhc--ccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhccCchHH
Q 014376 315 VIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDI 392 (426)
Q Consensus 315 viVi~TtN~~~~ld~al~~--R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~s~~di 392 (426)
++||+|||.++.+|+++++ ||+..++++.|+.++|.+||+.++++.. .....++..++..++|++++++
T Consensus 617 v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~---------~~~~~~l~~la~~t~g~sgadi 687 (806)
T 1ypw_A 617 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP---------VAKDVDLEFLAKMTNGFSGADL 687 (806)
T ss_dssp CBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC-------------CCCCSCSCGGGSSSCCHHH
T ss_pred eEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCC---------CCcccCHHHHHHhccccCHHHH
Confidence 9999999999999999998 9999999999999999999998876532 2234567788888999999999
Q ss_pred HHhhhh
Q 014376 393 QEADRS 398 (426)
Q Consensus 393 ~~~~~~ 398 (426)
+..++.
T Consensus 688 ~~l~~~ 693 (806)
T 1ypw_A 688 TEICQR 693 (806)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988653
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.84 E-value=1.7e-20 Score=205.37 Aligned_cols=215 Identities=26% Similarity=0.322 Sum_probs=175.1
Q ss_pred chhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEE
Q 014376 155 DGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEV 234 (426)
Q Consensus 155 ~~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i 234 (426)
.-.|++++|.+.+++.|.+.+..+...... +..+.+..+++++|+||||||||||++++|+.++.++ +.+
T Consensus 200 ~v~~~di~G~~~~~~~l~e~i~~~l~~~~~-~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~---------i~v 269 (806)
T 1ypw_A 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPAL-FKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---------FLI 269 (806)
T ss_dssp SCCGGGCCSCSGGGGHHHHHHHHHHHCGGG-GTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE---------EEE
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhCHHH-HHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE---------EEE
Confidence 356999999999999999988765543321 1223344589999999999999999999999986544 999
Q ss_pred eccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCc
Q 014376 235 NAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPN 314 (426)
Q Consensus 235 ~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~ 314 (426)
++.++.+.+.++....+..+|+.+.. ..++++||||++.+...+.. .......++++.+++.+++++...+
T Consensus 270 ~~~~l~~~~~g~~~~~l~~vf~~a~~-----~~p~il~iDEid~l~~~~~~----~~~~~~~~~~~~Ll~ll~g~~~~~~ 340 (806)
T 1ypw_A 270 NGPEIMSKLAGESESNLRKAFEEAEK-----NAPAIIFIDELDAIAPKREK----THGEVERRIVSQLLTLMDGLKQRAH 340 (806)
T ss_dssp EHHHHSSSSTTHHHHHHHHHHHHHHH-----HCSEEEEEESGGGTSCTTSC----CCSHHHHHHHHHHHHHHHSSCTTSC
T ss_pred EchHhhhhhhhhHHHHHHHHHHHHHh-----cCCcEEEeccHHHhhhcccc----ccchHHHHHHHHHHHHhhhhccccc
Confidence 99999999999999999999999876 37899999999998765421 1223346788899999999888889
Q ss_pred EEEEEEeCCCCcCCHHHhc--ccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhccCchHH
Q 014376 315 VIILTTSNITAAIDIAFVD--RADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDI 392 (426)
Q Consensus 315 viVi~TtN~~~~ld~al~~--R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~s~~di 392 (426)
+++++++|.++.+|+++.+ ||+..+.++.|+.++|.+|++.++.... ......+..++..+.+++++++
T Consensus 341 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~---------l~~~~~l~~la~~t~g~~g~dl 411 (806)
T 1ypw_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK---------LADDVDLEQVANETHGHVGADL 411 (806)
T ss_dssp CEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSC---------CCTTCCTHHHHHSCSSCCHHHH
T ss_pred EEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCC---------CcccchhHHHHHhhcCcchHHH
Confidence 9999999999999999986 9999999999999999999987654431 2344567889999999999998
Q ss_pred HHhhh
Q 014376 393 QEADR 397 (426)
Q Consensus 393 ~~~~~ 397 (426)
...+.
T Consensus 412 ~~l~~ 416 (806)
T 1ypw_A 412 AALCS 416 (806)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87754
No 30
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.77 E-value=2.4e-18 Score=167.16 Aligned_cols=187 Identities=18% Similarity=0.196 Sum_probs=141.6
Q ss_pred cchhhhhhhchhhHHHHHHHHHHHHH---HHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcce
Q 014376 154 FDGMWESLIYESGLKQRLLHYAASAL---MFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQ 230 (426)
Q Consensus 154 ~~~~~~~lv~~~~~k~~L~~~~~~~~---~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~ 230 (426)
...+|.+++|.+++|+.|.+++.... .+...|+.+. ..+.+++|+||||||||++|+++|+.++... ......
T Consensus 26 ~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~--~~~~~vll~G~~GtGKT~la~~la~~l~~~~--~~~~~~ 101 (309)
T 3syl_A 26 LEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHE--TPTLHMSFTGNPGTGKTTVALKMAGLLHRLG--YVRKGH 101 (309)
T ss_dssp HHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSS--CCCCEEEEEECTTSSHHHHHHHHHHHHHHTT--SSSSCC
T ss_pred HHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCC--CCCceEEEECCCCCCHHHHHHHHHHHHHhcC--CcCCCc
Confidence 44566789999999999998876533 3334454431 2246799999999999999999999986422 233557
Q ss_pred EEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc
Q 014376 231 LVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK 310 (426)
Q Consensus 231 ~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~ 310 (426)
++.+++.++.+.+++.....+..+|..+ .+++|+|||+|.+...+. ........++.|+..++.
T Consensus 102 ~~~~~~~~l~~~~~g~~~~~~~~~~~~~--------~~~vl~iDEid~l~~~~~------~~~~~~~~~~~Ll~~l~~-- 165 (309)
T 3syl_A 102 LVSVTRDDLVGQYIGHTAPKTKEVLKRA--------MGGVLFIDEAYYLYRPDN------ERDYGQEAIEILLQVMEN-- 165 (309)
T ss_dssp EEEECGGGTCCSSTTCHHHHHHHHHHHH--------TTSEEEEETGGGSCCCC---------CCTHHHHHHHHHHHHH--
T ss_pred EEEEcHHHhhhhcccccHHHHHHHHHhc--------CCCEEEEEChhhhccCCC------cccccHHHHHHHHHHHhc--
Confidence 8999999999999988887777777654 357999999999864321 112345778889998886
Q ss_pred CCCcEEEEEEeCCCC-----cCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHHH
Q 014376 311 SSPNVIILTTSNITA-----AIDIAFVDRADIKAYVGPPTLQARYEILRSCLQEL 360 (426)
Q Consensus 311 ~~~~viVi~TtN~~~-----~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~l 360 (426)
...+++||+++|... .+++++++||+..+++++|+.+++.+|++.++.+.
T Consensus 166 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~ 220 (309)
T 3syl_A 166 NRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQ 220 (309)
T ss_dssp CTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHc
Confidence 345678888887653 24789999999999999999999999999998773
No 31
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.71 E-value=1.7e-17 Score=160.56 Aligned_cols=191 Identities=13% Similarity=0.183 Sum_probs=126.8
Q ss_pred ccccchhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCc--cccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCc
Q 014376 151 AKEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPF--LVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQ 228 (426)
Q Consensus 151 ~~~~~~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~--~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~ 228 (426)
..-...+.+.++|++++++.+...+..... ..+.... .-..+.+++|+||||||||++|+++++.++.+
T Consensus 7 ~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~------- 77 (310)
T 1ofh_A 7 REIVSELDQHIIGQADAKRAVAIALRNRWR--RMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP------- 77 (310)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHHH--TTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCC-------
T ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHHHh--hhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------
Confidence 333445566799999999999887765321 1111100 00114579999999999999999999999654
Q ss_pred ceEEEEecccccc-ccccch-HHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHh
Q 014376 229 CQLVEVNAHSLFS-KWFSES-GKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQM 306 (426)
Q Consensus 229 ~~~i~i~~~~l~~-~~~~e~-~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l 306 (426)
++.+++..+.. .+.+.. ...+..++..+...+.....+++++|||+|.+...... ++.......+.+.|+..+
T Consensus 78 --~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~---~~~~~~~~~~~~~Ll~~l 152 (310)
T 1ofh_A 78 --FIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEY---SGADVSREGVQRDLLPLV 152 (310)
T ss_dssp --EEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSC---CSSHHHHHHHHHHHHHHH
T ss_pred --EEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccc---cccchhHHHHHHHHHHHh
Confidence 48899888765 444432 34455555532111111124689999999998653311 111112223467788888
Q ss_pred hhhc--------CCCcEEEEEE----eCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHH
Q 014376 307 DKLK--------SSPNVIILTT----SNITAAIDIAFVDRADIKAYVGPPTLQARYEILRS 355 (426)
Q Consensus 307 d~l~--------~~~~viVi~T----tN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~ 355 (426)
+... ...++++|++ ++.+..+++++++||+..+++++|+.+++.+|++.
T Consensus 153 e~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 153 EGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTE 213 (310)
T ss_dssp HCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHS
T ss_pred cCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHh
Confidence 7532 2346777777 45677899999999998899999999999999983
No 32
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.70 E-value=6.2e-17 Score=169.87 Aligned_cols=170 Identities=24% Similarity=0.311 Sum_probs=113.2
Q ss_pred chhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEE
Q 014376 155 DGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEV 234 (426)
Q Consensus 155 ~~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i 234 (426)
..++++++|.+++++.+.+++....... .+ .+.+++|+|||||||||+++++|+.++.++ ..+
T Consensus 77 ~~l~~di~G~~~vk~~i~~~~~l~~~~~--~~------~g~~vll~Gp~GtGKTtlar~ia~~l~~~~---------~~i 139 (543)
T 3m6a_A 77 RLLDEEHHGLEKVKERILEYLAVQKLTK--SL------KGPILCLAGPPGVGKTSLAKSIAKSLGRKF---------VRI 139 (543)
T ss_dssp GTHHHHCSSCHHHHHHHHHHHHHHHHSS--SC------CSCEEEEESSSSSSHHHHHHHHHHHHTCEE---------EEE
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhcc--cC------CCCEEEEECCCCCCHHHHHHHHHHhcCCCe---------EEE
Confidence 3578899999999999987754322211 11 367899999999999999999999997655 555
Q ss_pred ecccccc---------ccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHH
Q 014376 235 NAHSLFS---------KWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQ 305 (426)
Q Consensus 235 ~~~~l~~---------~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ 305 (426)
++..+.. .+.+.....+...|..+. ....++||||+|.+...++. ..++.|++.
T Consensus 140 ~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~------~~~~vl~lDEid~l~~~~~~-----------~~~~~LL~~ 202 (543)
T 3m6a_A 140 SLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAG------KLNPVFLLDEIDKMSSDFRG-----------DPSSAMLEV 202 (543)
T ss_dssp CCCC--------------------CHHHHHHTTC------SSSEEEEEEESSSCC--------------------CCGGG
T ss_pred EecccchhhhhhhHHHHHhccCchHHHHHHHHhh------ccCCEEEEhhhhhhhhhhcc-----------CHHHHHHHH
Confidence 5544321 222333233333333321 13359999999998764421 244567777
Q ss_pred hhhhcC-------------CCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 306 MDKLKS-------------SPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 306 ld~l~~-------------~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
|+.... ..+++||+|+|.++.++++|++||. +++++.|+.+++.+|++.++..
T Consensus 203 ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~-vi~~~~~~~~e~~~Il~~~l~~ 268 (543)
T 3m6a_A 203 LDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRME-IINIAGYTEIEKLEIVKDHLLP 268 (543)
T ss_dssp TCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEE-EEECCCCCHHHHHHHHHHTHHH
T ss_pred HhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhcc-eeeeCCCCHHHHHHHHHHHHHH
Confidence 664321 1578999999999999999999994 7899999999999999987743
No 33
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.70 E-value=1.3e-18 Score=178.96 Aligned_cols=174 Identities=18% Similarity=0.220 Sum_probs=122.1
Q ss_pred cchhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEE
Q 014376 154 FDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVE 233 (426)
Q Consensus 154 ~~~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~ 233 (426)
+...|++++|++++++.+..++... ..|..+ ++++||+||||||||++|+++|+.++. ...++.
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~~----~~~~~~-----~~~iLl~GppGtGKT~la~ala~~l~~-------~~~~~~ 95 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVELI----KSKKMA-----GRAVLLAGPPGTGKTALALAIAQELGS-------KVPFCP 95 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHH----HTTCCT-----TCEEEEECCTTSSHHHHHHHHHHHHCT-------TSCEEE
T ss_pred hhhchhhccCHHHHHHHHHHHHHHH----HhCCCC-----CCeEEEECCCcCCHHHHHHHHHHHhCC-------CceEEE
Confidence 3457999999999999988776421 234332 578999999999999999999999962 245699
Q ss_pred EeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCC---------------hhHHH
Q 014376 234 VNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPS---------------DSIRV 298 (426)
Q Consensus 234 i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~---------------~~~~~ 298 (426)
+++.++.+++.++.+. +...|..+.. .....|++|||||+|.+..++.....++... ...+.
T Consensus 96 ~~~~~~~~~~~~~~~~-~~~~f~~a~~--~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 172 (456)
T 2c9o_A 96 MVGSEVYSTEIKKTEV-LMENFRRAIG--LRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKL 172 (456)
T ss_dssp EEGGGGCCSSSCHHHH-HHHHHHHTEE--EEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEE
T ss_pred EeHHHHHHHhhhhhHH-HHHHHHHHHh--hhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhh
Confidence 9999999999999887 8888877621 0125789999999999987765432222110 11123
Q ss_pred HHHHHHHhhh--hcCCCcEEEEEEeCCCCcCCHHHh--cccCe--EEEeCCCCH
Q 014376 299 VNALLTQMDK--LKSSPNVIILTTSNITAAIDIAFV--DRADI--KAYVGPPTL 346 (426)
Q Consensus 299 ~~~ll~~ld~--l~~~~~viVi~TtN~~~~ld~al~--~R~~~--~i~i~~p~~ 346 (426)
.+.++..++. +.....++|++|||.++.+|+++. +||+. .++++.|+.
T Consensus 173 ~~~ll~~l~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~ 226 (456)
T 2c9o_A 173 DPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKG 226 (456)
T ss_dssp CHHHHHHHHHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCS
T ss_pred hHHHHHHHhhccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCch
Confidence 3446666652 233344666799999999999986 79988 567788754
No 34
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.70 E-value=1.3e-16 Score=159.09 Aligned_cols=188 Identities=21% Similarity=0.270 Sum_probs=127.0
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccc-cCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEe
Q 014376 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLV-SWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVN 235 (426)
Q Consensus 157 ~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i-~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~ 235 (426)
+-+.++|++.+++.+...+.........+...... ..+.++||+||||||||++|+++|+.++.++ +.++
T Consensus 13 l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~---------~~~~ 83 (363)
T 3hws_A 13 LDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPF---------TMAD 83 (363)
T ss_dssp HHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE---------EEEE
T ss_pred HHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCE---------EEec
Confidence 34456999999999998886555444433221111 1256799999999999999999999996554 8899
Q ss_pred ccccccc-cccch-HHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhh----
Q 014376 236 AHSLFSK-WFSES-GKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL---- 309 (426)
Q Consensus 236 ~~~l~~~-~~~e~-~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l---- 309 (426)
+..+... |++.. ...+..+|..+...+. ...+++|||||+|.+...+..... +......++++.|++.|++.
T Consensus 84 ~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~vl~lDEid~l~~~~~~~~~-~~~~~~~~~~~~Ll~~leg~~~~~ 161 (363)
T 3hws_A 84 ATTLTEAGYVGEDVENIIQKLLQKCDYDVQ-KAQRGIVYIDQIDKISRKSDNPSI-TRDVSGEGVQQALLKLIEGTVAAV 161 (363)
T ss_dssp HHHHTTCHHHHHHHTHHHHHHHHHTTTCHH-HHHHCEEEEECHHHHCCCSSCC----CHHHHHHHHHHHHHHHHCC----
T ss_pred hHHhcccccccccHHHHHHHHHHHhhhhHH-hcCCcEEEEeChhhhccccccccc-ccccchHHHHHHHHHHhcCceeec
Confidence 9887643 66654 4555666655411111 125689999999999764422110 11112234889999999832
Q ss_pred ---------------cCCCcEEEEEEeCCC----------Cc-----------------------------------CCH
Q 014376 310 ---------------KSSPNVIILTTSNIT----------AA-----------------------------------IDI 329 (426)
Q Consensus 310 ---------------~~~~~viVi~TtN~~----------~~-----------------------------------ld~ 329 (426)
....|+++|+++|.. .. +.+
T Consensus 162 ~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~ 241 (363)
T 3hws_A 162 PPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIP 241 (363)
T ss_dssp ------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCH
T ss_pred cCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCH
Confidence 122455566665542 11 689
Q ss_pred HHhcccCeEEEeCCCCHHHHHHHHHH
Q 014376 330 AFVDRADIKAYVGPPTLQARYEILRS 355 (426)
Q Consensus 330 al~~R~~~~i~i~~p~~~~r~~Il~~ 355 (426)
+|++||+.++.+.+|+.+.+.+|+..
T Consensus 242 ~l~~R~~~~~~~~pl~~~~~~~I~~~ 267 (363)
T 3hws_A 242 EFIGRLPVVATLNELSEEALIQILKE 267 (363)
T ss_dssp HHHTTCCEEEECCCCCHHHHHHHHHS
T ss_pred HHhcccCeeeecCCCCHHHHHHHHHH
Confidence 99999999999999999999999886
No 35
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.69 E-value=9.1e-16 Score=152.53 Aligned_cols=197 Identities=20% Similarity=0.205 Sum_probs=125.7
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEe
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVN 235 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~ 235 (426)
..|++++|.+..++.+....... ..+..+ ++.+||+||||||||++|+++|+.++.. ..++.++
T Consensus 41 ~~~~~ivG~~~~~~~l~~l~~~~----~~~~~~-----~~~vLl~GppGtGKT~la~~la~~l~~~-------~~~~~~~ 104 (368)
T 3uk6_A 41 QASQGMVGQLAARRAAGVVLEMI----REGKIA-----GRAVLIAGQPGTGKTAIAMGMAQALGPD-------TPFTAIA 104 (368)
T ss_dssp SEETTEESCHHHHHHHHHHHHHH----HTTCCT-----TCEEEEEESTTSSHHHHHHHHHHHHCSS-------CCEEEEE
T ss_pred cchhhccChHHHHHHHHHHHHHH----HcCCCC-----CCEEEEECCCCCCHHHHHHHHHHHhccc-------CCccccc
Confidence 45889999999988866554321 123222 5789999999999999999999999631 2346666
Q ss_pred ccccccccccc-------------------------------------------------hHHHHHHHHHHHHHHHHhcc
Q 014376 236 AHSLFSKWFSE-------------------------------------------------SGKLVAKLFQKIQEMVEEEN 266 (426)
Q Consensus 236 ~~~l~~~~~~e-------------------------------------------------~~~~v~~~f~~~~~~~~~~~ 266 (426)
+..+.+.+.+. ....++..+..+........
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g 184 (368)
T 3uk6_A 105 GSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEG 184 (368)
T ss_dssp GGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHT
T ss_pred chhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhc
Confidence 55543332221 12334444444433222212
Q ss_pred ----CcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEe-----------CCCCcCCHHH
Q 014376 267 ----NLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTS-----------NITAAIDIAF 331 (426)
Q Consensus 267 ----~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~Tt-----------N~~~~ld~al 331 (426)
.|++|+|||++.+.. ...+.|+..++.. ...++++++. |.+..+++++
T Consensus 185 ~~~~~~~vl~IDEi~~l~~---------------~~~~~L~~~le~~--~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l 247 (368)
T 3uk6_A 185 KAEIIPGVLFIDEVHMLDI---------------ESFSFLNRALESD--MAPVLIMATNRGITRIRGTSYQSPHGIPIDL 247 (368)
T ss_dssp C---CBCEEEEESGGGSBH---------------HHHHHHHHHTTCT--TCCEEEEEESCSEEECBTSSCEEETTCCHHH
T ss_pred cccccCceEEEhhccccCh---------------HHHHHHHHHhhCc--CCCeeeeecccceeeeeccCCCCcccCCHHH
Confidence 257999999998854 4567777776652 2345555554 3467789999
Q ss_pred hcccCeEEEeCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhccCchHHHH
Q 014376 332 VDRADIKAYVGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQE 394 (426)
Q Consensus 332 ~~R~~~~i~i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~s~~di~~ 394 (426)
++||.. +.+++|+.+++.++++..+.... . ......+..++..+.+.++.++.+
T Consensus 248 ~sR~~~-i~~~~~~~~e~~~il~~~~~~~~---~-----~~~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 248 LDRLLI-VSTTPYSEKDTKQILRIRCEEED---V-----EMSEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp HTTEEE-EEECCCCHHHHHHHHHHHHHHTT---C-----CBCHHHHHHHHHHHHHSCHHHHHH
T ss_pred HhhccE-EEecCCCHHHHHHHHHHHHHHcC---C-----CCCHHHHHHHHHHhcCCCHHHHHH
Confidence 999965 79999999999999998876521 1 112223455566555444444433
No 36
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.68 E-value=8.4e-16 Score=151.23 Aligned_cols=157 Identities=17% Similarity=0.230 Sum_probs=118.1
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEec
Q 014376 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (426)
Q Consensus 157 ~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (426)
.|++++|.+.+++.+..++...... +-. ..+++|+||||||||++|+++++.++.++ +.+++
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~---~~~------~~~vll~G~~GtGKT~la~~ia~~~~~~~---------~~~~~ 88 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKR---NEC------LDHILFSGPAGLGKTTLANIISYEMSANI---------KTTAA 88 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHT---TSC------CCCEEEECSTTSSHHHHHHHHHHHTTCCE---------EEEEG
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhc---CCC------CCeEEEECcCCCCHHHHHHHHHHHhCCCe---------EEecc
Confidence 5889999999999998887643221 111 24599999999999999999999986554 77887
Q ss_pred cccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcC-----
Q 014376 237 HSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS----- 311 (426)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~----- 311 (426)
..+. ....+...+ .....+++|+|||++.+.. ..++.|+..++....
T Consensus 89 ~~~~------~~~~~~~~~-------~~~~~~~vl~lDEi~~l~~---------------~~~~~Ll~~l~~~~~~~~~~ 140 (338)
T 3pfi_A 89 PMIE------KSGDLAAIL-------TNLSEGDILFIDEIHRLSP---------------AIEEVLYPAMEDYRLDIIIG 140 (338)
T ss_dssp GGCC------SHHHHHHHH-------HTCCTTCEEEEETGGGCCH---------------HHHHHHHHHHHTSCC-----
T ss_pred hhcc------chhHHHHHH-------HhccCCCEEEEechhhcCH---------------HHHHHHHHHHHhccchhhcc
Confidence 6542 112222222 2235678999999998854 345667776664321
Q ss_pred -----------CCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 312 -----------SPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 312 -----------~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
.+++++|++||....+++++++||+..+.+++|+.+++..+++..+..
T Consensus 141 ~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~ 199 (338)
T 3pfi_A 141 SGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALK 199 (338)
T ss_dssp ----CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred cCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHh
Confidence 124889999999999999999999999999999999999999988765
No 37
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.65 E-value=1.6e-16 Score=161.48 Aligned_cols=176 Identities=17% Similarity=0.200 Sum_probs=80.4
Q ss_pred cccccchhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccc-cCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCc
Q 014376 150 PAKEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLV-SWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQ 228 (426)
Q Consensus 150 p~~~~~~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i-~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~ 228 (426)
|..-.+.+.+.++|++++|+.|...+..+.......- .... .+++++||+||||||||++++++|+.++.++
T Consensus 6 P~~i~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~-~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~------ 78 (444)
T 1g41_A 6 PREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQE-PLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPF------ 78 (444)
T ss_dssp HHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCT-TTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhcccc-ccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCc------
Confidence 4444455666889999999999888866544333211 0111 1346799999999999999999999997655
Q ss_pred ceEEEEecccccc-ccccc-hHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHh
Q 014376 229 CQLVEVNAHSLFS-KWFSE-SGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQM 306 (426)
Q Consensus 229 ~~~i~i~~~~l~~-~~~~e-~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l 306 (426)
+.+++..+.+ +|.++ ....++.+|+.+..+. .+||++.+.... ......++++.|+..|
T Consensus 79 ---~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~~---------~~De~d~~~~~~-------~~~~e~rvl~~LL~~~ 139 (444)
T 1g41_A 79 ---IKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLV---------RQQEIAKNRARA-------EDVAEERILDALLPPA 139 (444)
T ss_dssp ---EEEEGGGGC----CCCCTHHHHHHHHHHHHHHH---------HHHHHHSCC--------------------------
T ss_pred ---eeecchhhcccceeeccHHHHHHHHHHHHHhcc---------hhhhhhhhhccc-------hhhHHHHHHHHHHHHh
Confidence 8899988887 58885 7888999999887642 367877654322 1123358999999999
Q ss_pred hhhcCCCcEEEEEE-eCCCCcCCHHHh--cccCeEEEeCCCCHH-HHHHHH
Q 014376 307 DKLKSSPNVIILTT-SNITAAIDIAFV--DRADIKAYVGPPTLQ-ARYEIL 353 (426)
Q Consensus 307 d~l~~~~~viVi~T-tN~~~~ld~al~--~R~~~~i~i~~p~~~-~r~~Il 353 (426)
|++.....+ +++ ||.++.+|++++ .|||..|+++.|+.. .+.+|+
T Consensus 140 dg~~~~~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 140 KNQWGEVEN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp ---------------------------------------------------
T ss_pred hcccccccc--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhh
Confidence 998765554 444 999999999999 599999999999987 677765
No 38
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.64 E-value=4.3e-15 Score=144.11 Aligned_cols=176 Identities=21% Similarity=0.264 Sum_probs=121.3
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEe
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVN 235 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~ 235 (426)
.+.+.++|++.+++.+...+..... ++... -.....++|+||||||||++|+++|+.+.. ....++.++
T Consensus 14 ~l~~~i~G~~~~~~~l~~~i~~~~~----~~~~~-~~~~~~~ll~G~~GtGKt~la~~la~~~~~------~~~~~~~~~ 82 (311)
T 4fcw_A 14 ELHKRVVGQDEAIRAVADAIRRARA----GLKDP-NRPIGSFLFLGPTGVGKTELAKTLAATLFD------TEEAMIRID 82 (311)
T ss_dssp HHHTTCCSCHHHHHHHHHHHHHHHH----TCSCT-TSCSEEEEEESCSSSSHHHHHHHHHHHHHS------CGGGEEEEE
T ss_pred HHhhhcCCHHHHHHHHHHHHHHHhc----CCCCC-CCCceEEEEECCCCcCHHHHHHHHHHHHcC------CCcceEEee
Confidence 5677889999999998888765321 21110 011347999999999999999999999842 234568888
Q ss_pred cccccccc-----ccch----HHH-HHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHH
Q 014376 236 AHSLFSKW-----FSES----GKL-VAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQ 305 (426)
Q Consensus 236 ~~~l~~~~-----~~e~----~~~-v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ 305 (426)
+..+.... ++.. +.. ...+...... ...++++|||+|.+.. .+++.|+..
T Consensus 83 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-----~~~~vl~lDEi~~l~~---------------~~~~~Ll~~ 142 (311)
T 4fcw_A 83 MTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRR-----RPYSVILFDAIEKAHP---------------DVFNILLQM 142 (311)
T ss_dssp GGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHH-----CSSEEEEEETGGGSCH---------------HHHHHHHHH
T ss_pred cccccccccHHHhcCCCCccccccccchHHHHHHh-----CCCeEEEEeChhhcCH---------------HHHHHHHHH
Confidence 87654321 1100 000 0111111111 3458999999998854 566778888
Q ss_pred hhhhc---------CCCcEEEEEEeCC--------------------------CCcCCHHHhcccCeEEEeCCCCHHHHH
Q 014376 306 MDKLK---------SSPNVIILTTSNI--------------------------TAAIDIAFVDRADIKAYVGPPTLQARY 350 (426)
Q Consensus 306 ld~l~---------~~~~viVi~TtN~--------------------------~~~ld~al~~R~~~~i~i~~p~~~~r~ 350 (426)
|+.-. ...++++|+|+|. ...++++|++||+..+.+++|+.+++.
T Consensus 143 le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~ 222 (311)
T 4fcw_A 143 LDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIR 222 (311)
T ss_dssp HHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHH
T ss_pred HhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHH
Confidence 77532 1147889999998 446789999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 014376 351 EILRSCLQELIR 362 (426)
Q Consensus 351 ~Il~~~l~~l~~ 362 (426)
.|++.++.++..
T Consensus 223 ~i~~~~l~~~~~ 234 (311)
T 4fcw_A 223 QIVEIQMSYLRA 234 (311)
T ss_dssp HHHHHHTHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998887654
No 39
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.63 E-value=1.5e-15 Score=155.52 Aligned_cols=142 Identities=20% Similarity=0.314 Sum_probs=101.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhcc-CcEEEEE
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEEN-NLVFVLI 273 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~-~~~illI 273 (426)
..++|+||||+|||||++++++.+... +++..++++++..+...+........ ...+..... .+.+|+|
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~----~~~~~v~~v~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~vL~I 200 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQN----EPDLRVMYITSEKFLNDLVDSMKEGK------LNEFREKYRKKVDILLI 200 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHH----CCSSCEEEEEHHHHHHHHHHHHHTTC------HHHHHHHHTTTCSEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHh----CCCCeEEEeeHHHHHHHHHHHHHccc------HHHHHHHhcCCCCEEEE
Confidence 459999999999999999999988433 34556788888765432221111000 011111113 6789999
Q ss_pred echhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCc---CCHHHhcccC--eEEEeCCCCHHH
Q 014376 274 DEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAA---IDIAFVDRAD--IKAYVGPPTLQA 348 (426)
Q Consensus 274 DEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~---ld~al~~R~~--~~i~i~~p~~~~ 348 (426)
||++.+..+. .....++..++.+...+..+|++|++.+.. +++++++||. ..+.+++|+.++
T Consensus 201 DEi~~l~~~~-------------~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~ 267 (440)
T 2z4s_A 201 DDVQFLIGKT-------------GVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEET 267 (440)
T ss_dssp ECGGGGSSCH-------------HHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHH
T ss_pred eCcccccCCh-------------HHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHH
Confidence 9999886421 345667777777777777888888877765 7899999985 788999999999
Q ss_pred HHHHHHHHHHH
Q 014376 349 RYEILRSCLQE 359 (426)
Q Consensus 349 r~~Il~~~l~~ 359 (426)
+.+|++..+..
T Consensus 268 r~~iL~~~~~~ 278 (440)
T 2z4s_A 268 RKSIARKMLEI 278 (440)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988864
No 40
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.63 E-value=1.5e-16 Score=141.83 Aligned_cols=169 Identities=20% Similarity=0.300 Sum_probs=109.3
Q ss_pred chhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhccccc-CCCCcceEEE
Q 014376 155 DGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS-SRYPQCQLVE 233 (426)
Q Consensus 155 ~~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~-~~~~~~~~i~ 233 (426)
...|++++|.++..+.+.+.+.. + .++.++|+||||||||++++++++.+..... ....+..++.
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~-------~-------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 83 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQR-------R-------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 83 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------S-------SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred hccccccccchHHHHHHHHHHhc-------C-------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEE
Confidence 34578899998888877776432 1 1467999999999999999999999843210 0012456678
Q ss_pred Eeccccc--cccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcC
Q 014376 234 VNAHSLF--SKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS 311 (426)
Q Consensus 234 i~~~~l~--~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~ 311 (426)
+++..+. ..+.+.....+..++..+. ....+.+++|||++.+...+.. . ... ...+.+...+ .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~vl~iDe~~~l~~~~~~---~-~~~---~~~~~l~~~~----~ 148 (195)
T 1jbk_A 84 LDMGALVAGAKYRGEFEERLKGVLNDLA----KQEGNVILFIDELHTMVGAGKA---D-GAM---DAGNMLKPAL----A 148 (195)
T ss_dssp ECHHHHHTTTCSHHHHHHHHHHHHHHHH----HSTTTEEEEEETGGGGTT----------CC---CCHHHHHHHH----H
T ss_pred eeHHHHhccCCccccHHHHHHHHHHHHh----hcCCCeEEEEeCHHHHhccCcc---c-chH---HHHHHHHHhh----c
Confidence 8877664 2333333444445544433 2356789999999998654321 0 011 1223333332 2
Q ss_pred CCcEEEEEEeCCCC-----cCCHHHhcccCeEEEeCCCCHHHHHHHH
Q 014376 312 SPNVIILTTSNITA-----AIDIAFVDRADIKAYVGPPTLQARYEIL 353 (426)
Q Consensus 312 ~~~viVi~TtN~~~-----~ld~al~~R~~~~i~i~~p~~~~r~~Il 353 (426)
.+++.+|+++|... .+++++.+||. .+++++|+.+++.+|+
T Consensus 149 ~~~~~~i~~~~~~~~~~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 149 RGELHCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp TTSCCEEEEECHHHHHHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred cCCeEEEEeCCHHHHHHHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 35667777777765 67999999997 6899999999998775
No 41
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.63 E-value=7e-15 Score=147.16 Aligned_cols=189 Identities=19% Similarity=0.227 Sum_probs=114.1
Q ss_pred chhhhhhhchhhHHHHHHHHHHHHHHHhhcCC--------CC--------ccccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 155 DGMWESLIYESGLKQRLLHYAASALMFAEKGV--------NP--------FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 155 ~~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~--------~~--------~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (426)
..+-+.++|++.+|+.|...+..+......|. ++ .....+.+++|+||||||||++|+++|+.+
T Consensus 17 ~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 17 AVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp HHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 34555689999999999887743322222111 00 000114569999999999999999999999
Q ss_pred cccccCCCCcceEEEEeccccc-cccccch-HHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhH
Q 014376 219 SIRFSSRYPQCQLVEVNAHSLF-SKWFSES-GKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSI 296 (426)
Q Consensus 219 ~~~~~~~~~~~~~i~i~~~~l~-~~~~~e~-~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~ 296 (426)
+.++ +.+++..+. ..++++. ...+..++......+. ...+++++|||++.+...+.....+.+ ....
T Consensus 97 ~~~~---------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~vl~iDEi~~l~~~~~~~~~~~~-~~~~ 165 (376)
T 1um8_A 97 DIPI---------AISDATSLTEAGYVGEDVENILTRLLQASDWNVQ-KAQKGIVFIDEIDKISRLSENRSITRD-VSGE 165 (376)
T ss_dssp TCCE---------EEEEGGGCC--------CTHHHHHHHHHTTTCHH-HHTTSEEEEETGGGC---------------CH
T ss_pred CCCE---------EEecchhhhhcCcCCccHHHHHHHHHhhccchhh-hcCCeEEEEcCHHHHhhhcCCCceecc-cchH
Confidence 6544 788887765 3444443 3334444443221111 125689999999999876432221111 1123
Q ss_pred HHHHHHHHHhhhhc-------------------CCCcEEEEEEeCC----------------------------------
Q 014376 297 RVVNALLTQMDKLK-------------------SSPNVIILTTSNI---------------------------------- 323 (426)
Q Consensus 297 ~~~~~ll~~ld~l~-------------------~~~~viVi~TtN~---------------------------------- 323 (426)
.+++.|+..|++.. ...++++|+++|.
T Consensus 166 ~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~ 245 (376)
T 1um8_A 166 GVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHL 245 (376)
T ss_dssp HHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGG
T ss_pred HHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhh
Confidence 47888998888531 1245677777762
Q ss_pred -------CCcCCHHHhcccCeEEEeCCCCHHHHHHHHH
Q 014376 324 -------TAAIDIAFVDRADIKAYVGPPTLQARYEILR 354 (426)
Q Consensus 324 -------~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~ 354 (426)
...+.++|.+|++.++.+++++.++..+|+.
T Consensus 246 ~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~ 283 (376)
T 1um8_A 246 VQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQ 283 (376)
T ss_dssp CCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHH
T ss_pred cCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHh
Confidence 1135688999999999999999999999987
No 42
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.61 E-value=6e-15 Score=144.33 Aligned_cols=158 Identities=22% Similarity=0.277 Sum_probs=114.9
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEe
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVN 235 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~ 235 (426)
..|++++|++++++.|.+++.. |-. +..+|++||||||||++++++++.++.+ +++++
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~-------~~~------~~~~L~~G~~G~GKT~la~~la~~l~~~---------~~~i~ 80 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSK-------GKI------PHIILHSPSPGTGKTTVAKALCHDVNAD---------MMFVN 80 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHT-------TCC------CSEEEECSSTTSSHHHHHHHHHHHTTEE---------EEEEE
T ss_pred CCHHHHhCcHHHHHHHHHHHHc-------CCC------CeEEEeeCcCCCCHHHHHHHHHHHhCCC---------EEEEc
Confidence 3578899999999988887652 211 3568888999999999999999999644 48888
Q ss_pred ccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHH-HHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCc
Q 014376 236 AHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLA-AARKAALSGSEPSDSIRVVNALLTQMDKLKSSPN 314 (426)
Q Consensus 236 ~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~-~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~ 314 (426)
+.+.. ...+...+............+.+++|||+|.+. . ...+.|+..++.. ..+
T Consensus 81 ~~~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~---------------~~~~~L~~~le~~--~~~ 136 (324)
T 3u61_B 81 GSDCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLA---------------ESQRHLRSFMEAY--SSN 136 (324)
T ss_dssp TTTCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGH---------------HHHHHHHHHHHHH--GGG
T ss_pred ccccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcH---------------HHHHHHHHHHHhC--CCC
Confidence 76632 223333322222111111267899999999886 3 3456677777764 356
Q ss_pred EEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHHH
Q 014376 315 VIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQEL 360 (426)
Q Consensus 315 viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~l 360 (426)
+.+|+|+|.+..+++++++|| ..+.+++|+.+++.+|++..+..+
T Consensus 137 ~~iI~~~n~~~~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~~~~l 181 (324)
T 3u61_B 137 CSIIITANNIDGIIKPLQSRC-RVITFGQPTDEDKIEMMKQMIRRL 181 (324)
T ss_dssp CEEEEEESSGGGSCTTHHHHS-EEEECCCCCHHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCccccCHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHH
Confidence 778889999999999999999 579999999999988877766554
No 43
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.60 E-value=5.3e-15 Score=141.28 Aligned_cols=159 Identities=21% Similarity=0.267 Sum_probs=106.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccch----HHHHHHHHHHHHHHHHhccCcE
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSES----GKLVAKLFQKIQEMVEEENNLV 269 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~----~~~v~~~f~~~~~~~~~~~~~~ 269 (426)
...+||+||||||||++|+++|+.++.++ +.+++.+.+ ++.. ...+..+|..+.. ..+.
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~~~~~---------~~i~~~~~~---~g~~~~~~~~~~~~~~~~~~~-----~~~~ 126 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEESNFPF---------IKICSPDKM---IGFSETAKCQAMKKIFDDAYK-----SQLS 126 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHTCSE---------EEEECGGGC---TTCCHHHHHHHHHHHHHHHHT-----SSEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCCE---------EEEeCHHHh---cCCchHHHHHHHHHHHHHHHh-----cCCc
Confidence 46899999999999999999999986554 777776532 3322 2345555555432 4689
Q ss_pred EEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcC-CCcEEEEEEeCCCCcCCH-HHhcccCeEEEeCCCCH-
Q 014376 270 FVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS-SPNVIILTTSNITAAIDI-AFVDRADIKAYVGPPTL- 346 (426)
Q Consensus 270 illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~-~~~viVi~TtN~~~~ld~-al~~R~~~~i~i~~p~~- 346 (426)
+|+|||+|.+...+.. .+......++.|...++.... ..+++||+|||.++.+++ .+.+||+..+.+|+++.
T Consensus 127 vl~iDEid~l~~~~~~-----~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r 201 (272)
T 1d2n_A 127 CVVVDDIERLLDYVPI-----GPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATG 201 (272)
T ss_dssp EEEECCHHHHTTCBTT-----TTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEH
T ss_pred EEEEEChhhhhccCCC-----ChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHH
Confidence 9999999999653311 112234566667676665543 346889999999988887 67899999999987766
Q ss_pred HHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhcc
Q 014376 347 QARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKL 387 (426)
Q Consensus 347 ~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~ 387 (426)
++...++.. . .. .....+..++..+.|+
T Consensus 202 ~~i~~i~~~---~----~~------~~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 202 EQLLEALEL---L----GN------FKDKERTTIAQQVKGK 229 (272)
T ss_dssp HHHHHHHHH---H----TC------SCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHh---c----CC------CCHHHHHHHHHHhcCC
Confidence 444444432 1 11 1223456667776775
No 44
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.60 E-value=1.2e-14 Score=158.48 Aligned_cols=171 Identities=22% Similarity=0.297 Sum_probs=123.2
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCC-cEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEE
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWN-RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEV 234 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~-~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i 234 (426)
.+.+.++|++.+++.+.+.+.... .|.... ..+ ..+||+||||||||++|+++|+.+. ..+..++.+
T Consensus 488 ~l~~~viGq~~a~~~l~~~i~~~~----~~~~~~--~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~------~~~~~~i~i 555 (758)
T 3pxi_A 488 ILHSRVIGQDEAVVAVAKAVRRAR----AGLKDP--KRPIGSFIFLGPTGVGKTELARALAESIF------GDEESMIRI 555 (758)
T ss_dssp HHHTTSCSCHHHHHHHHHHHHHHT----TTCSCT--TSCSEEEEEESCTTSSHHHHHHHHHHHHH------SCTTCEEEE
T ss_pred HHhCcCcChHHHHHHHHHHHHHHH----cccCCC--CCCceEEEEECCCCCCHHHHHHHHHHHhc------CCCcceEEE
Confidence 345678899999888888765432 232210 111 2699999999999999999999983 224567999
Q ss_pred eccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc----
Q 014376 235 NAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK---- 310 (426)
Q Consensus 235 ~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~---- 310 (426)
++..+...+....+ .++..++. ..+++|||||++.+.. .+++.|+..|+.-.
T Consensus 556 ~~s~~~~~~~~~~~----~l~~~~~~-----~~~~vl~lDEi~~~~~---------------~~~~~Ll~~le~g~~~~~ 611 (758)
T 3pxi_A 556 DMSEYMEKHSTSGG----QLTEKVRR-----KPYSVVLLDAIEKAHP---------------DVFNILLQVLEDGRLTDS 611 (758)
T ss_dssp EGGGGCSSCCCC-------CHHHHHH-----CSSSEEEEECGGGSCH---------------HHHHHHHHHHHHSBCC--
T ss_pred echhcccccccccc----hhhHHHHh-----CCCeEEEEeCccccCH---------------HHHHHHHHHhccCeEEcC
Confidence 99998876655421 12222222 3568999999998744 57788888888632
Q ss_pred -----CCCcEEEEEEeCCCCc------------CCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHHHHH
Q 014376 311 -----SSPNVIILTTSNITAA------------IDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIR 362 (426)
Q Consensus 311 -----~~~~viVi~TtN~~~~------------ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~l~~ 362 (426)
...+++||+|||.+.. +.++|++||+.++.+++|+.+++.+|++.++..+..
T Consensus 612 ~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~ 680 (758)
T 3pxi_A 612 KGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTK 680 (758)
T ss_dssp ---CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHH
T ss_pred CCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 3357899999997543 789999999999999999999999999998887643
No 45
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.59 E-value=8.8e-15 Score=143.66 Aligned_cols=154 Identities=24% Similarity=0.283 Sum_probs=106.1
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEe
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVN 235 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~ 235 (426)
.+++.++|++++++.+...+.. +++++|+||||||||++++++|+.++.++ +.++
T Consensus 24 ~~~~~i~g~~~~~~~l~~~l~~----------------~~~vll~G~pGtGKT~la~~la~~~~~~~---------~~i~ 78 (331)
T 2r44_A 24 EVGKVVVGQKYMINRLLIGICT----------------GGHILLEGVPGLAKTLSVNTLAKTMDLDF---------HRIQ 78 (331)
T ss_dssp HHTTTCCSCHHHHHHHHHHHHH----------------TCCEEEESCCCHHHHHHHHHHHHHTTCCE---------EEEE
T ss_pred HhccceeCcHHHHHHHHHHHHc----------------CCeEEEECCCCCcHHHHHHHHHHHhCCCe---------EEEe
Confidence 4677889999988887766532 24599999999999999999999986544 5555
Q ss_pred ccc------cccccccchHHHHHHHHHHHHHHHHhccC---cEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHh
Q 014376 236 AHS------LFSKWFSESGKLVAKLFQKIQEMVEEENN---LVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQM 306 (426)
Q Consensus 236 ~~~------l~~~~~~e~~~~v~~~f~~~~~~~~~~~~---~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l 306 (426)
+.. +.......... ........ ..+++|||++.+.. ...+.|+..+
T Consensus 79 ~~~~~~~~~l~g~~~~~~~~----------~~~~~~~g~l~~~vl~iDEi~~~~~---------------~~~~~Ll~~l 133 (331)
T 2r44_A 79 FTPDLLPSDLIGTMIYNQHK----------GNFEVKKGPVFSNFILADEVNRSPA---------------KVQSALLECM 133 (331)
T ss_dssp CCTTCCHHHHHEEEEEETTT----------TEEEEEECTTCSSEEEEETGGGSCH---------------HHHHHHHHHH
T ss_pred cCCCCChhhcCCceeecCCC----------CceEeccCcccccEEEEEccccCCH---------------HHHHHHHHHH
Confidence 431 11110000000 00000011 26999999998754 4556677776
Q ss_pred hhh---------cCCCcEEEEEEeCCCC-----cCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 307 DKL---------KSSPNVIILTTSNITA-----AIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 307 d~l---------~~~~~viVi~TtN~~~-----~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
+.. ....+++|++|+|..+ .+++++++||+..+.+++|+.+++.+|++..+..
T Consensus 134 ~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 134 QEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp HHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred hcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhcccc
Confidence 642 2245688889999654 3799999999999999999999999999887753
No 46
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.59 E-value=1e-14 Score=142.23 Aligned_cols=158 Identities=20% Similarity=0.239 Sum_probs=114.1
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEec
Q 014376 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (426)
Q Consensus 157 ~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (426)
.|++++|.+..++.+...+...... +-. +..++|+||||||||++|+++++.++.++ +.+++
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~---~~~------~~~vll~G~~GtGKT~la~~i~~~~~~~~---------~~~~~ 71 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKAR---KEP------LEHLLLFGPPGLGKTTLAHVIAHELGVNL---------RVTSG 71 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHH---CSC------CCCCEEECCTTCCCHHHHHHHHHHHTCCE---------EEECT
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHcc---CCC------CCcEEEECCCCCCHHHHHHHHHHHhCCCE---------EEEec
Confidence 5788999999999888877543221 111 35699999999999999999999986544 67777
Q ss_pred cccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc------
Q 014376 237 HSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK------ 310 (426)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~------ 310 (426)
..+.. .. .++..+.. ....+.+++|||++.+.. ...+.++..++...
T Consensus 72 ~~~~~------~~---~l~~~l~~---~~~~~~~l~lDEi~~l~~---------------~~~~~L~~~l~~~~~~~v~~ 124 (324)
T 1hqc_A 72 PAIEK------PG---DLAAILAN---SLEEGDILFIDEIHRLSR---------------QAEEHLYPAMEDFVMDIVIG 124 (324)
T ss_dssp TTCCS------HH---HHHHHHTT---TCCTTCEEEETTTTSCCH---------------HHHHHHHHHHHHSEEEECCS
T ss_pred cccCC------hH---HHHHHHHH---hccCCCEEEEECCccccc---------------chHHHHHHHHHhhhhHHhcc
Confidence 65521 11 12221111 124678999999998754 23455666666432
Q ss_pred ----------CCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 311 ----------SSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 311 ----------~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
...++++|++||....+++++.+||+..+.+++|+.+++.++++.++..
T Consensus 125 ~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~ 183 (324)
T 1hqc_A 125 QGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARL 183 (324)
T ss_dssp SSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHT
T ss_pred ccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHh
Confidence 1135789999999999999999999989999999999999998887653
No 47
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.56 E-value=1.4e-14 Score=141.93 Aligned_cols=139 Identities=20% Similarity=0.297 Sum_probs=97.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEe
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLID 274 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illID 274 (426)
..++|+|||||||||+++++++.+... +..++++++.++...+...........|... ...+.+|+||
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~vL~iD 105 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKR------GYRVIYSSADDFAQAMVEHLKKGTINEFRNM------YKSVDLLLLD 105 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHT------TCCEEEEEHHHHHHHHHHHHHHTCHHHHHHH------HHTCSEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHC------CCEEEEEEHHHHHHHHHHHHHcCcHHHHHHH------hcCCCEEEEc
Confidence 569999999999999999999988421 2455888887764333222211111111111 1247899999
Q ss_pred chhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCC---cCCHHHhcccC--eEEEeCCCCHHHH
Q 014376 275 EVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITA---AIDIAFVDRAD--IKAYVGPPTLQAR 349 (426)
Q Consensus 275 Eid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~---~ld~al~~R~~--~~i~i~~p~~~~r 349 (426)
|++.+..++ .....++..++.+...+..+|+++++.+. .+++++.+||. ..+.+++ +.+++
T Consensus 106 Ei~~l~~~~-------------~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~ 171 (324)
T 1l8q_A 106 DVQFLSGKE-------------RTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTR 171 (324)
T ss_dssp CGGGGTTCH-------------HHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHH
T ss_pred CcccccCCh-------------HHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHH
Confidence 999886421 23455666666665666778888887776 57999999995 7889999 99999
Q ss_pred HHHHHHHHHH
Q 014376 350 YEILRSCLQE 359 (426)
Q Consensus 350 ~~Il~~~l~~ 359 (426)
.+|++..+..
T Consensus 172 ~~il~~~~~~ 181 (324)
T 1l8q_A 172 FKIIKEKLKE 181 (324)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998864
No 48
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.56 E-value=3.9e-14 Score=154.31 Aligned_cols=170 Identities=21% Similarity=0.238 Sum_probs=118.7
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecc
Q 014376 158 WESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (426)
Q Consensus 158 ~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (426)
.+.++|++++++.+...+.. ...|..... .....+||+||||||||++|+++|+.++.+ ++.++++
T Consensus 457 ~~~v~g~~~~~~~l~~~i~~----~~~g~~~~~-~p~~~~ll~G~~GtGKT~la~~la~~l~~~---------~~~i~~s 522 (758)
T 1r6b_X 457 KMLVFGQDKAIEALTEAIKM----ARAGLGHEH-KPVGSFLFAGPTGVGKTEVTVQLSKALGIE---------LLRFDMS 522 (758)
T ss_dssp TTTSCSCHHHHHHHHHHHHH----HHTTCSCTT-SCSEEEEEECSTTSSHHHHHHHHHHHHTCE---------EEEEEGG
T ss_pred HhhccCHHHHHHHHHHHHHH----HhcccCCCC-CCceEEEEECCCCCcHHHHHHHHHHHhcCC---------EEEEech
Confidence 34577788887777765432 334442110 012469999999999999999999999644 4888887
Q ss_pred ccccc-----cccc----hHHH-HHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhh
Q 014376 238 SLFSK-----WFSE----SGKL-VAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMD 307 (426)
Q Consensus 238 ~l~~~-----~~~e----~~~~-v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld 307 (426)
.+..+ .++. .+.. ...+...++. ...++++|||++.+.. .+++.|+..|+
T Consensus 523 ~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~-----~~~~vl~lDEi~~~~~---------------~~~~~Ll~~le 582 (758)
T 1r6b_X 523 EYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIK-----HPHAVLLLDEIEKAHP---------------DVFNILLQVMD 582 (758)
T ss_dssp GCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHH-----CSSEEEEEETGGGSCH---------------HHHHHHHHHHH
T ss_pred hhcchhhHhhhcCCCCCCcCccccchHHHHHHh-----CCCcEEEEeCccccCH---------------HHHHHHHHHhc
Confidence 76542 2221 1111 1112222222 4568999999998744 57788888888
Q ss_pred hhc---------CCCcEEEEEEeCCCC-------------------------cCCHHHhcccCeEEEeCCCCHHHHHHHH
Q 014376 308 KLK---------SSPNVIILTTSNITA-------------------------AIDIAFVDRADIKAYVGPPTLQARYEIL 353 (426)
Q Consensus 308 ~l~---------~~~~viVi~TtN~~~-------------------------~ld~al~~R~~~~i~i~~p~~~~r~~Il 353 (426)
.-. ...+++||+|+|... .++++|++||+.++.+++|+.+++..|+
T Consensus 583 ~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~ 662 (758)
T 1r6b_X 583 NGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVV 662 (758)
T ss_dssp HSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHH
T ss_pred CcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHH
Confidence 521 125788999999854 5789999999999999999999999999
Q ss_pred HHHHHHHH
Q 014376 354 RSCLQELI 361 (426)
Q Consensus 354 ~~~l~~l~ 361 (426)
+.++.++.
T Consensus 663 ~~~l~~~~ 670 (758)
T 1r6b_X 663 DKFIVELQ 670 (758)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987653
No 49
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.56 E-value=1.2e-13 Score=125.83 Aligned_cols=159 Identities=24% Similarity=0.270 Sum_probs=112.3
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEe
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVN 235 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~ 235 (426)
..|++++|.++.++.+.+++... + ...++|+||+|+|||++++++++.+.... ....++.++
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~------~--------~~~~ll~G~~G~GKT~l~~~l~~~~~~~~----~~~~~~~~~ 75 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERK------N--------IPHLLFSGPPGTGKTATAIALARDLFGEN----WRDNFIEMN 75 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTT------C--------CCCEEEECSTTSSHHHHHHHHHHHHHGGG----GGGGEEEEE
T ss_pred CCHHHHcCcHHHHHHHHHHHhCC------C--------CCeEEEECCCCCCHHHHHHHHHHHHhccc----cccceEEec
Confidence 35778999999998888876531 1 23499999999999999999999874321 123457777
Q ss_pred ccccccccccchHHHHHHHHHHHHHHHHh----ccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcC
Q 014376 236 AHSLFSKWFSESGKLVAKLFQKIQEMVEE----ENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS 311 (426)
Q Consensus 236 ~~~l~~~~~~e~~~~v~~~f~~~~~~~~~----~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~ 311 (426)
+..... ...+.. ........ ...+.+++|||++.+.. ...+.++..++. .
T Consensus 76 ~~~~~~------~~~~~~---~~~~~~~~~~~~~~~~~vliiDe~~~l~~---------------~~~~~l~~~l~~--~ 129 (226)
T 2chg_A 76 ASDERG------IDVVRH---KIKEFARTAPIGGAPFKIIFLDEADALTA---------------DAQAALRRTMEM--Y 129 (226)
T ss_dssp TTCTTC------HHHHHH---HHHHHHTSCCSTTCSCEEEEEETGGGSCH---------------HHHHHHHHHHHH--T
T ss_pred cccccC------hHHHHH---HHHHHhcccCCCccCceEEEEeChhhcCH---------------HHHHHHHHHHHh--c
Confidence 654321 111221 22222211 24678999999998854 234556666665 2
Q ss_pred CCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 312 SPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 312 ~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
..++.+|+++|.+..+++++.+|+. .+.+++|+.++..++++..+..
T Consensus 130 ~~~~~~i~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~ 176 (226)
T 2chg_A 130 SKSCRFILSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEK 176 (226)
T ss_dssp TTTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCChhhcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHH
Confidence 4567888888999999999999996 8899999999999999887765
No 50
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.3e-13 Score=134.57 Aligned_cols=172 Identities=13% Similarity=0.144 Sum_probs=117.3
Q ss_pred hhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhccccc-CCCCcceEEEEecccc
Q 014376 161 LIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS-SRYPQCQLVEVNAHSL 239 (426)
Q Consensus 161 lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~-~~~~~~~~i~i~~~~l 239 (426)
|.+.++..+.+..++...+.-. .+.+++|+||||||||++++.+++.+..... ...+...++++||..+
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~----------~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~ 91 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSS----------QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALEL 91 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT----------CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCC
T ss_pred cCCHHHHHHHHHHHHHHHhcCC----------CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecccc
Confidence 6677777777777766544211 1467999999999999999999999964321 1123567899999776
Q ss_pred cccc----------------ccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHH
Q 014376 240 FSKW----------------FSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALL 303 (426)
Q Consensus 240 ~~~~----------------~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll 303 (426)
.+.+ .+.....+..+|.... .....+.|++|||+|.+. . ..++..++
T Consensus 92 ~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~---~~~~~~~ii~lDE~d~l~--~------------q~~L~~l~ 154 (318)
T 3te6_A 92 AGMDALYEKIWFAISKENLCGDISLEALNFYITNVP---KAKKRKTLILIQNPENLL--S------------EKILQYFE 154 (318)
T ss_dssp C--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSC---GGGSCEEEEEEECCSSSC--C------------THHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhh---hccCCceEEEEecHHHhh--c------------chHHHHHH
Confidence 4321 1122333444444321 123567899999999986 1 14555555
Q ss_pred HHhhhhcCCCcEEEEEEeCCCCcC----CHHHhcccC-eEEEeCCCCHHHHHHHHHHHHHHHH
Q 014376 304 TQMDKLKSSPNVIILTTSNITAAI----DIAFVDRAD-IKAYVGPPTLQARYEILRSCLQELI 361 (426)
Q Consensus 304 ~~ld~l~~~~~viVi~TtN~~~~l----d~al~~R~~-~~i~i~~p~~~~r~~Il~~~l~~l~ 361 (426)
.... ....+++||+++|..+.. ++++.+|++ ..+.|++++.++..+|++..++...
T Consensus 155 ~~~~--~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~ 215 (318)
T 3te6_A 155 KWIS--SKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLL 215 (318)
T ss_dssp HHHH--CSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_pred hccc--ccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhh
Confidence 5422 245678999999987653 455678997 5789999999999999999998753
No 51
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.53 E-value=2.4e-14 Score=141.04 Aligned_cols=171 Identities=20% Similarity=0.262 Sum_probs=100.5
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcc-------cccCCCC-
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSI-------RFSSRYP- 227 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~-------~~~~~~~- 227 (426)
..|++++|.+.+++.+...+.. .. +.++||+||||||||++|+++++.++. ++.....
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~~~----~~----------~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 86 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTAVD----PG----------IGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVE 86 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHC----GG----------GCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGG
T ss_pred CCchhccChHHHHHHHHHHhhC----CC----------CceEEEECCCCccHHHHHHHHHHhCccccccccccccccccc
Confidence 3578899998877664333211 11 234999999999999999999998863 1100000
Q ss_pred ----------------cceEEEEeccccccccccchHHHHHHHHHHHHHH----HHhccCcEEEEEechhhHHHHhhhhc
Q 014376 228 ----------------QCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEM----VEEENNLVFVLIDEVESLAAARKAAL 287 (426)
Q Consensus 228 ----------------~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~----~~~~~~~~illIDEid~l~~~r~~~l 287 (426)
...++.+.........++... +...+...... .......++++|||++.+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~--~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~------ 158 (350)
T 1g8p_A 87 MIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALD--IERAISKGEKAFEPGLLARANRGYLYIDECNLLED------ 158 (350)
T ss_dssp GSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEEC--HHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH------
T ss_pred cccchhhhhccccccCCCcccccCCCcchhhheeech--hhhhhcCCceeecCceeeecCCCEEEEeChhhCCH------
Confidence 001111111100001111100 01111111000 00012468999999998865
Q ss_pred cCCCCChhHHHHHHHHHHhhh----hcC-------CCcEEEEEEeCCCC-cCCHHHhcccCeEEEeCCC-CHHHHHHHHH
Q 014376 288 SGSEPSDSIRVVNALLTQMDK----LKS-------SPNVIILTTSNITA-AIDIAFVDRADIKAYVGPP-TLQARYEILR 354 (426)
Q Consensus 288 s~~e~~~~~~~~~~ll~~ld~----l~~-------~~~viVi~TtN~~~-~ld~al~~R~~~~i~i~~p-~~~~r~~Il~ 354 (426)
..++.|+..++. +.. ..++++|+|+|... .+++++++||+..+.+++| +.+.+.+|++
T Consensus 159 ---------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~ 229 (350)
T 1g8p_A 159 ---------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIR 229 (350)
T ss_dssp ---------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHH
T ss_pred ---------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHH
Confidence 345667776664 111 13789999999754 7899999999999999999 6777878887
Q ss_pred HHH
Q 014376 355 SCL 357 (426)
Q Consensus 355 ~~l 357 (426)
..+
T Consensus 230 ~~~ 232 (350)
T 1g8p_A 230 RRD 232 (350)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 52
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.53 E-value=3.3e-14 Score=141.28 Aligned_cols=181 Identities=20% Similarity=0.225 Sum_probs=115.7
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccc
Q 014376 159 ESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (426)
Q Consensus 159 ~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (426)
++++|.++..+.+..++.... .+ ..+..++|+||||||||++++++++.+.........+..++.+++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~----~~------~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPAL----RG------EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGT----SS------CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred CCCCCHHHHHHHHHHHHHHHH----cC------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 678899988888887654311 01 11467999999999999999999998843210001134568888876
Q ss_pred ccccc--cc-----------chHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHH
Q 014376 239 LFSKW--FS-----------ESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQ 305 (426)
Q Consensus 239 l~~~~--~~-----------e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ 305 (426)
..+.. +. ..+.....++..+...+.....+.+|+|||++.+...+ .....+..++..
T Consensus 89 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~----------~~~~~l~~l~~~ 158 (387)
T 2v1u_A 89 RETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP----------GGQDLLYRITRI 158 (387)
T ss_dssp SCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST----------THHHHHHHHHHG
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC----------CCChHHHhHhhc
Confidence 43211 00 00001223334444444334568899999999997631 012344555554
Q ss_pred hhhhcCCCcEEEEEEeCCC---CcCCHHHhcccCe-EEEeCCCCHHHHHHHHHHHHHH
Q 014376 306 MDKLKSSPNVIILTTSNIT---AAIDIAFVDRADI-KAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 306 ld~l~~~~~viVi~TtN~~---~~ld~al~~R~~~-~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
++......++++|+++|.. ..+++.+.+||.. .+.+++++.+++.++++..+..
T Consensus 159 ~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~ 216 (387)
T 2v1u_A 159 NQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEE 216 (387)
T ss_dssp GGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHH
T ss_pred hhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHh
Confidence 4432214567888888877 6689999999986 8899999999999999988865
No 53
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.53 E-value=6.3e-14 Score=143.51 Aligned_cols=153 Identities=17% Similarity=0.284 Sum_probs=107.7
Q ss_pred hhhhhhhchhhHH---HHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEE
Q 014376 156 GMWESLIYESGLK---QRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLV 232 (426)
Q Consensus 156 ~~~~~lv~~~~~k---~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i 232 (426)
..|++++|++.+. +.|...+... . ...++|+||||||||++++++++.++.++ +
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~~------~--------~~~vLL~GppGtGKTtlAr~ia~~~~~~f---------~ 79 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEAG------H--------LHSMILWGPPGTGKTTLAEVIARYANADV---------E 79 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHHT------C--------CCEEEEECSTTSSHHHHHHHHHHHTTCEE---------E
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHcC------C--------CcEEEEECCCCCcHHHHHHHHHHHhCCCe---------E
Confidence 3578899999887 5666555421 1 13599999999999999999999986554 6
Q ss_pred EEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCC
Q 014376 233 EVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS 312 (426)
Q Consensus 233 ~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~ 312 (426)
.+++... ..+.++.++..+..... ...+.+|||||++.+... .++.|+..++.
T Consensus 80 ~l~a~~~-------~~~~ir~~~~~a~~~~~-~~~~~iLfIDEI~~l~~~---------------~q~~LL~~le~---- 132 (447)
T 3pvs_A 80 RISAVTS-------GVKEIREAIERARQNRN-AGRRTILFVDEVHRFNKS---------------QQDAFLPHIED---- 132 (447)
T ss_dssp EEETTTC-------CHHHHHHHHHHHHHHHH-TTCCEEEEEETTTCC---------------------CCHHHHHT----
T ss_pred EEEeccC-------CHHHHHHHHHHHHHhhh-cCCCcEEEEeChhhhCHH---------------HHHHHHHHHhc----
Confidence 7776432 23456666666554332 346789999999988652 23456666664
Q ss_pred CcEEEEEEe--CCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 313 PNVIILTTS--NITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 313 ~~viVi~Tt--N~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
+.+++|++| |....+++++++|+. ++.+++|+.+++..+++..+..
T Consensus 133 ~~v~lI~att~n~~~~l~~aL~sR~~-v~~l~~l~~edi~~il~~~l~~ 180 (447)
T 3pvs_A 133 GTITFIGATTENPSFELNSALLSRAR-VYLLKSLSTEDIEQVLTQAMED 180 (447)
T ss_dssp TSCEEEEEESSCGGGSSCHHHHTTEE-EEECCCCCHHHHHHHHHHHHHC
T ss_pred CceEEEecCCCCcccccCHHHhCcee-EEeeCCcCHHHHHHHHHHHHHH
Confidence 445555544 445578999999985 7789999999999999998875
No 54
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.51 E-value=1.2e-14 Score=129.33 Aligned_cols=161 Identities=19% Similarity=0.302 Sum_probs=102.3
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccC-CCCcceEEEE
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSS-RYPQCQLVEV 234 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~-~~~~~~~i~i 234 (426)
..|++++|.+...+.+.+.+.. + .+++++|+||||||||++++++++.+...... ...+..++.+
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~-------~-------~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~ 84 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILSR-------R-------TKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSL 84 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS-------S-------SSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEE
T ss_pred cccchhhcchHHHHHHHHHHhC-------C-------CCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEE
Confidence 4577889998887777766532 1 14679999999999999999999988432110 0124566777
Q ss_pred ecccccc--ccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCC
Q 014376 235 NAHSLFS--KWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS 312 (426)
Q Consensus 235 ~~~~l~~--~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~ 312 (426)
++..+.. .+.+.....+..++..+.. ...+.+++|||++.+...+.. . .......+.+...++ .
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~vl~iDe~~~l~~~~~~----~--~~~~~~~~~l~~~~~----~ 150 (187)
T 2p65_A 85 DLSSLIAGAKYRGDFEERLKSILKEVQD----AEGQVVMFIDEIHTVVGAGAV----A--EGALDAGNILKPMLA----R 150 (187)
T ss_dssp CHHHHHHHCCSHHHHHHHHHHHHHHHHH----TTTSEEEEETTGGGGSSSSSS----C--TTSCCTHHHHHHHHH----T
T ss_pred eHHHhhcCCCchhHHHHHHHHHHHHHHh----cCCceEEEEeCHHHhcccccc----c--ccchHHHHHHHHHHh----c
Confidence 7665542 2223333344455544433 246789999999998643210 0 011123344444433 3
Q ss_pred CcEEEEEEeCCCC-----cCCHHHhcccCeEEEeCCCC
Q 014376 313 PNVIILTTSNITA-----AIDIAFVDRADIKAYVGPPT 345 (426)
Q Consensus 313 ~~viVi~TtN~~~-----~ld~al~~R~~~~i~i~~p~ 345 (426)
..+++|+++|.+. .+++++++||. .+++++|+
T Consensus 151 ~~~~ii~~~~~~~~~~~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 151 GELRCIGATTVSEYRQFIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp TCSCEEEEECHHHHHHHTTTCHHHHHHEE-EEECCSCC
T ss_pred CCeeEEEecCHHHHHHHHhccHHHHHhcC-cccCCCCC
Confidence 5677888888765 57999999997 48898885
No 55
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.51 E-value=5.4e-14 Score=146.70 Aligned_cols=178 Identities=20% Similarity=0.217 Sum_probs=109.4
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccc---cCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEE
Q 014376 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLV---SWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVE 233 (426)
Q Consensus 157 ~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i---~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~ 233 (426)
.|++++|.+.+++.|.+++.........++..... ...+.++|+||||||||++|+++|+.++.+ +++
T Consensus 37 ~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~---------~i~ 107 (516)
T 1sxj_A 37 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYD---------ILE 107 (516)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCE---------EEE
T ss_pred CHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCC---------EEE
Confidence 57889999999999999987644433233221111 124789999999999999999999999644 488
Q ss_pred EeccccccccccchHH-------HHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHh
Q 014376 234 VNAHSLFSKWFSESGK-------LVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQM 306 (426)
Q Consensus 234 i~~~~l~~~~~~e~~~-------~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~l 306 (426)
+++.++.+........ .+..+|..+.........+.+|+|||+|.+.... ...++.++..+
T Consensus 108 in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~------------~~~l~~L~~~l 175 (516)
T 1sxj_A 108 QNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD------------RGGVGQLAQFC 175 (516)
T ss_dssp ECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS------------TTHHHHHHHHH
T ss_pred EeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh------------HHHHHHHHHHH
Confidence 9988765432111000 0111222221111112467899999999885421 12345566655
Q ss_pred hhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 307 DKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 307 d~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
+.. ...+++++++.....+. .+.+ +...+.+++|+.+++.++++..+.+
T Consensus 176 ~~~--~~~iIli~~~~~~~~l~-~l~~-r~~~i~f~~~~~~~~~~~L~~i~~~ 224 (516)
T 1sxj_A 176 RKT--STPLILICNERNLPKMR-PFDR-VCLDIQFRRPDANSIKSRLMTIAIR 224 (516)
T ss_dssp HHC--SSCEEEEESCTTSSTTG-GGTT-TSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred Hhc--CCCEEEEEcCCCCccch-hhHh-ceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 542 22344444333323343 3444 4578999999999999998877654
No 56
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.49 E-value=7.4e-13 Score=121.87 Aligned_cols=166 Identities=20% Similarity=0.277 Sum_probs=109.6
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCC--------
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYP-------- 227 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~-------- 227 (426)
..|+++++.+..++.|.+.+.. +-. +..++|+||+|+|||++++.+++.+.........
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~-------~~~------~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSL-------GRI------HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 86 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHH-------TCC------CSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHH
T ss_pred ccHHHHhCcHHHHHHHHHHHHc-------CCC------CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 3577899999998888877642 111 2479999999999999999999988643211000
Q ss_pred -------cceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHH
Q 014376 228 -------QCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVN 300 (426)
Q Consensus 228 -------~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~ 300 (426)
...++.++... ......+..++..+... .....+.+|+|||++.+.. ...+
T Consensus 87 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~~~~~~vlviDe~~~l~~---------------~~~~ 144 (250)
T 1njg_A 87 REIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYA-PARGRFKVYLIDEVHMLSR---------------HSFN 144 (250)
T ss_dssp HHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCS-CSSSSSEEEEEETGGGSCH---------------HHHH
T ss_pred HHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhc-hhcCCceEEEEECcccccH---------------HHHH
Confidence 00122222211 01112222322221100 0123568999999998743 3456
Q ss_pred HHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 301 ALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 301 ~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
.++..++. ...++.+|+++|....+++++.+|+ ..+.+++++.++..++++..+..
T Consensus 145 ~l~~~l~~--~~~~~~~i~~t~~~~~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~ 200 (250)
T 1njg_A 145 ALLKTLEE--PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNE 200 (250)
T ss_dssp HHHHHHHS--CCTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhc--CCCceEEEEEeCChHhCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHh
Confidence 67777664 2457788888888888999999996 78999999999999999888765
No 57
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.49 E-value=1.9e-13 Score=136.12 Aligned_cols=172 Identities=17% Similarity=0.164 Sum_probs=111.7
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhccccc--CCCCcceEEEEec
Q 014376 159 ESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS--SRYPQCQLVEVNA 236 (426)
Q Consensus 159 ~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~--~~~~~~~~i~i~~ 236 (426)
++++|.++..+.+.+++..... +-. ++.++|+||||+|||++++++++.+..... ...++..++.+++
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~----~~~------~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK----NEV------KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT----TCC------CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred CCCCChHHHHHHHHHHHHHHHc----CCC------CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 6789999998888887754321 211 367999999999999999999998743210 0011456688887
Q ss_pred cccc-ccc--ccc------------hHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHH-HH
Q 014376 237 HSLF-SKW--FSE------------SGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRV-VN 300 (426)
Q Consensus 237 ~~l~-~~~--~~e------------~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~-~~ 300 (426)
.... +.. +.. .+.....++..+...+. ....+|+|||++.+..... ... +.
T Consensus 90 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~vlilDEi~~l~~~~~-----------~~~~l~ 156 (384)
T 2qby_B 90 REVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTR--NIRAIIYLDEVDTLVKRRG-----------GDIVLY 156 (384)
T ss_dssp HHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHS--SSCEEEEEETTHHHHHSTT-----------SHHHHH
T ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhc--cCCCEEEEECHHHhccCCC-----------CceeHH
Confidence 6543 110 000 00001222333333222 2234999999999975320 122 33
Q ss_pred HHHHHhhhhcCCCcEEEEEEeCCC---CcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 301 ALLTQMDKLKSSPNVIILTTSNIT---AAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 301 ~ll~~ld~l~~~~~viVi~TtN~~---~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
.++... .++.||+|+|.. ..+++++.+||+..+.+++++.++..++++..+.+
T Consensus 157 ~l~~~~------~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~ 212 (384)
T 2qby_B 157 QLLRSD------ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEY 212 (384)
T ss_dssp HHHTSS------SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHH
T ss_pred HHhcCC------cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHh
Confidence 333321 678888888877 66899999999889999999999999999988864
No 58
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.48 E-value=5.5e-14 Score=155.10 Aligned_cols=177 Identities=21% Similarity=0.327 Sum_probs=111.3
Q ss_pred chhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhccccc-CCCCcceEEE
Q 014376 155 DGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFS-SRYPQCQLVE 233 (426)
Q Consensus 155 ~~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~-~~~~~~~~i~ 233 (426)
.+.|+.++|.++..+++.+.+.. .. ..+++|+||||||||++++++|+.+..... ....+..++.
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~------~~--------~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 231 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLR------RT--------KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS 231 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHC------SS--------CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEE
T ss_pred cCCCcccCCcHHHHHHHHHHHhc------CC--------CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEE
Confidence 45688899999888887776532 11 245899999999999999999999843110 1112567788
Q ss_pred Eeccccc--cccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcC
Q 014376 234 VNAHSLF--SKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS 311 (426)
Q Consensus 234 i~~~~l~--~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~ 311 (426)
+++..+. .++.++....+..+|..+.. ...++||||||++.+...... .......+.+...++
T Consensus 232 l~~~~l~~g~~~~g~~~~~l~~~~~~~~~----~~~~~iL~IDEi~~l~~~~~~-------~g~~~~~~~L~~~l~---- 296 (854)
T 1qvr_A 232 LQMGSLLAGAKYRGEFEERLKAVIQEVVQ----SQGEVILFIDELHTVVGAGKA-------EGAVDAGNMLKPALA---- 296 (854)
T ss_dssp ECC-----------CHHHHHHHHHHHHHT----TCSSEEEEECCC--------------------------HHHHH----
T ss_pred eehHHhhccCccchHHHHHHHHHHHHHHh----cCCCeEEEEecHHHHhccCCc-------cchHHHHHHHHHHHh----
Confidence 9888876 45666677777777776654 236789999999999764422 111233444444443
Q ss_pred CCcEEEEEEeCCCC----cCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHHHH
Q 014376 312 SPNVIILTTSNITA----AIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELI 361 (426)
Q Consensus 312 ~~~viVi~TtN~~~----~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~l~ 361 (426)
.+.+.+|+++|..+ .+|++|.+||+. +.+++|+.+++.+|++..+....
T Consensus 297 ~~~i~~I~at~~~~~~~~~~d~aL~rRf~~-i~l~~p~~~e~~~iL~~~~~~~~ 349 (854)
T 1qvr_A 297 RGELRLIGATTLDEYREIEKDPALERRFQP-VYVDEPTVEETISILRGLKEKYE 349 (854)
T ss_dssp TTCCCEEEEECHHHHHHHTTCTTTCSCCCC-EEECCCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEecCchHHhhhccCHHHHhCCce-EEeCCCCHHHHHHHHHhhhhhhh
Confidence 35667777777664 369999999985 89999999999999998877654
No 59
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.47 E-value=5.6e-14 Score=144.88 Aligned_cols=160 Identities=19% Similarity=0.298 Sum_probs=106.3
Q ss_pred chhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccc-cCCCCcceEEE
Q 014376 155 DGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRF-SSRYPQCQLVE 233 (426)
Q Consensus 155 ~~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~-~~~~~~~~~i~ 233 (426)
.+.++.++|.+...+.+.+.+.. .. ..++||+||||||||++++++|+.+.... .....+..++.
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r------~~--------~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSR------RT--------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC------SS--------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred cCCCCCccCcHHHHHHHHHHHhc------cC--------CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence 35578899999988888876542 11 34699999999999999999999984321 00112455677
Q ss_pred EeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCC
Q 014376 234 VNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSP 313 (426)
Q Consensus 234 i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~ 313 (426)
+++. .++.++....+..+|..+.. ..+.|+||| +. ....+.|+..| ..+
T Consensus 242 l~~~---~~~~g~~e~~~~~~~~~~~~-----~~~~iLfiD--------------~~-----~~a~~~L~~~L----~~g 290 (468)
T 3pxg_A 242 LDMG---TKYRGEFEDRLKKVMDEIRQ-----AGNIILFID--------------AA-----IDASNILKPSL----ARG 290 (468)
T ss_dssp C-------------CTTHHHHHHHHHT-----CCCCEEEEC--------------C-------------CCCT----TSS
T ss_pred eeCC---ccccchHHHHHHHHHHHHHh-----cCCeEEEEe--------------Cc-----hhHHHHHHHhh----cCC
Confidence 7766 45556655666777777654 467899999 00 12334444443 346
Q ss_pred cEEEEEEeCCCC-----cCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHHH
Q 014376 314 NVIILTTSNITA-----AIDIAFVDRADIKAYVGPPTLQARYEILRSCLQEL 360 (426)
Q Consensus 314 ~viVi~TtN~~~-----~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~l 360 (426)
.+.+|++||... .+|+++.+||. .+.++.|+.+++.+|++.++...
T Consensus 291 ~v~vI~at~~~e~~~~~~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~ 341 (468)
T 3pxg_A 291 ELQCIGATTLDEYRKYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRY 341 (468)
T ss_dssp SCEEEEECCTTTTHHHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTS
T ss_pred CEEEEecCCHHHHHHHhhcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHHHH
Confidence 788999999887 57999999996 59999999999999999766553
No 60
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.46 E-value=6.2e-13 Score=146.69 Aligned_cols=176 Identities=22% Similarity=0.279 Sum_probs=120.6
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEe
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVN 235 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~ 235 (426)
.+|+.++|++.+.+.+...+... ..|..... .....+||+||||||||++|+++++.+.. .+..++.++
T Consensus 555 ~l~~~viG~~~a~~~l~~~i~~~----~~g~~~~~-~p~~~vLl~Gp~GtGKT~lA~~la~~~~~------~~~~~i~i~ 623 (854)
T 1qvr_A 555 ELHKRVVGQDEAIRAVADAIRRA----RAGLKDPN-RPIGSFLFLGPTGVGKTELAKTLAATLFD------TEEAMIRID 623 (854)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHHH----GGGCSCSS-SCSEEEEEBSCSSSSHHHHHHHHHHHHHS------SGGGEEEEC
T ss_pred HHhcccCCcHHHHHHHHHHHHHH----hcccCCCC-CCceEEEEECCCCCCHHHHHHHHHHHhcC------CCCcEEEEe
Confidence 46788999999988888776542 22221100 00247999999999999999999999831 234568899
Q ss_pred cccccccc-----ccchHHHH-----HHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHH
Q 014376 236 AHSLFSKW-----FSESGKLV-----AKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQ 305 (426)
Q Consensus 236 ~~~l~~~~-----~~e~~~~v-----~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ 305 (426)
+..+.... ++.....+ +.+...++. ...++|||||++.+.. .+++.|+..
T Consensus 624 ~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~-----~~~~vl~lDEi~~l~~---------------~~~~~Ll~~ 683 (854)
T 1qvr_A 624 MTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRR-----RPYSVILFDEIEKAHP---------------DVFNILLQI 683 (854)
T ss_dssp TTTCCSSGGGGGC--------------CHHHHHHH-----CSSEEEEESSGGGSCH---------------HHHHHHHHH
T ss_pred chhccchhHHHHHcCCCCCCcCccccchHHHHHHh-----CCCeEEEEecccccCH---------------HHHHHHHHH
Confidence 88765431 11111111 122222222 3568999999997743 677889988
Q ss_pred hhhhc---------CCCcEEEEEEeCC--------------------------CCcCCHHHhcccCeEEEeCCCCHHHHH
Q 014376 306 MDKLK---------SSPNVIILTTSNI--------------------------TAAIDIAFVDRADIKAYVGPPTLQARY 350 (426)
Q Consensus 306 ld~l~---------~~~~viVi~TtN~--------------------------~~~ld~al~~R~~~~i~i~~p~~~~r~ 350 (426)
|+.-. ...+++||+|||. ...+.++|++|++.++.+.+|+.+++.
T Consensus 684 l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~ 763 (854)
T 1qvr_A 684 LDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIR 763 (854)
T ss_dssp HTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHH
T ss_pred hccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHH
Confidence 88532 1247889999997 234678899999999989999999999
Q ss_pred HHHHHHHHHHHH
Q 014376 351 EILRSCLQELIR 362 (426)
Q Consensus 351 ~Il~~~l~~l~~ 362 (426)
.|++.++.++..
T Consensus 764 ~i~~~~l~~~~~ 775 (854)
T 1qvr_A 764 QIVEIQLSYLRA 775 (854)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 61
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.46 E-value=1.3e-12 Score=127.00 Aligned_cols=157 Identities=24% Similarity=0.316 Sum_probs=110.4
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEec
Q 014376 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (426)
Q Consensus 157 ~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (426)
.|++++|.+++++.|..++.. +- ..+++|+||||+|||++++++++.+.... ....++++++
T Consensus 23 ~~~~~~g~~~~~~~l~~~l~~-------~~-------~~~~ll~G~~G~GKT~la~~l~~~l~~~~----~~~~~~~~~~ 84 (327)
T 1iqp_A 23 RLDDIVGQEHIVKRLKHYVKT-------GS-------MPHLLFAGPPGVGKTTAALALARELFGEN----WRHNFLELNA 84 (327)
T ss_dssp STTTCCSCHHHHHHHHHHHHH-------TC-------CCEEEEESCTTSSHHHHHHHHHHHHHGGG----HHHHEEEEET
T ss_pred CHHHhhCCHHHHHHHHHHHHc-------CC-------CCeEEEECcCCCCHHHHHHHHHHHhcCCc----ccCceEEeec
Confidence 578899999999988877653 21 13599999999999999999999974221 1234577776
Q ss_pred cccccccccchHHHHHHHHHHHHHHHHh----ccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCC
Q 014376 237 HSLFSKWFSESGKLVAKLFQKIQEMVEE----ENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS 312 (426)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~~~~~~~~~----~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~ 312 (426)
.+..+ ...+...+..+... ...+.+++|||++.+.. ...+.|+..++. ..
T Consensus 85 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~---------------~~~~~L~~~le~--~~ 138 (327)
T 1iqp_A 85 SDERG---------INVIREKVKEFARTKPIGGASFKIIFLDEADALTQ---------------DAQQALRRTMEM--FS 138 (327)
T ss_dssp TCHHH---------HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH---------------HHHHHHHHHHHH--TT
T ss_pred cccCc---------hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH---------------HHHHHHHHHHHh--cC
Confidence 54311 11111112222111 14578999999998854 345667777765 34
Q ss_pred CcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHH
Q 014376 313 PNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQ 358 (426)
Q Consensus 313 ~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~ 358 (426)
.++.+|.++|.+..+.+++.+|+. .+.+++++.++..++++..+.
T Consensus 139 ~~~~~i~~~~~~~~l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~~ 183 (327)
T 1iqp_A 139 SNVRFILSCNYSSKIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAE 183 (327)
T ss_dssp TTEEEEEEESCGGGSCHHHHHTEE-EEECCCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCccccCHHHHhhCc-EEEecCCCHHHHHHHHHHHHH
Confidence 567788888999999999999985 789999999999888887654
No 62
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.46 E-value=1.9e-13 Score=126.65 Aligned_cols=132 Identities=15% Similarity=0.160 Sum_probs=93.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEE
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLI 273 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illI 273 (426)
++.++|+||||||||++++++++.+... +..++.+++.++....... + .....+.+++|
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~--------~-------~~~~~~~vlii 110 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANEL------ERRSFYIPLGIHASISTAL--------L-------EGLEQFDLICI 110 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHT------TCCEEEEEGGGGGGSCGGG--------G-------TTGGGSSEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc------CCeEEEEEHHHHHHHHHHH--------H-------HhccCCCEEEE
Confidence 4679999999999999999999998643 2345778877765432111 0 11135689999
Q ss_pred echhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcE-EEEEEeCCCC---cCCHHHhcccC--eEEEeCCCCHH
Q 014376 274 DEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNV-IILTTSNITA---AIDIAFVDRAD--IKAYVGPPTLQ 347 (426)
Q Consensus 274 DEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~v-iVi~TtN~~~---~ld~al~~R~~--~~i~i~~p~~~ 347 (426)
||++.+.... ...+.++..++.....+.+ +|+++++.+. .+++++.+||. ..+.+++|+.+
T Consensus 111 De~~~~~~~~-------------~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~ 177 (242)
T 3bos_A 111 DDVDAVAGHP-------------LWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDD 177 (242)
T ss_dssp ETGGGGTTCH-------------HHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGG
T ss_pred eccccccCCH-------------HHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHH
Confidence 9999875321 2245566666655544555 6666655554 34688999985 89999999999
Q ss_pred HHHHHHHHHHHH
Q 014376 348 ARYEILRSCLQE 359 (426)
Q Consensus 348 ~r~~Il~~~l~~ 359 (426)
++.++++..+..
T Consensus 178 ~~~~~l~~~~~~ 189 (242)
T 3bos_A 178 EKLAALQRRAAM 189 (242)
T ss_dssp GHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988864
No 63
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.44 E-value=4.5e-13 Score=131.91 Aligned_cols=161 Identities=20% Similarity=0.165 Sum_probs=109.3
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEec
Q 014376 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (426)
Q Consensus 157 ~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (426)
.|++++|.+++++.|...+.. +- ..+++|+||||+|||++++++++.++.+. .....++.+++
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~~-------~~-------~~~~ll~G~~G~GKT~la~~la~~l~~~~---~~~~~~~~~~~ 97 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLKS-------AN-------LPHMLFYGPPGTGKTSTILALTKELYGPD---LMKSRILELNA 97 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTTC-------TT-------CCCEEEECSTTSSHHHHHHHHHHHHHHHH---HHTTSEEEECS
T ss_pred CHHHhhCCHHHHHHHHHHHhc-------CC-------CCEEEEECCCCCCHHHHHHHHHHHhCCCc---ccccceEEEcc
Confidence 578899999999888776532 11 12399999999999999999999985321 01234577777
Q ss_pred cccccccccchHHHHHHHHHHHHHH-----------HHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHH
Q 014376 237 HSLFSKWFSESGKLVAKLFQKIQEM-----------VEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQ 305 (426)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~~~~~~-----------~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ 305 (426)
.+... ...+...+...... ......+.+++|||++.+.. ...+.|+..
T Consensus 98 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~---------------~~~~~Ll~~ 156 (353)
T 1sxj_D 98 SDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA---------------DAQSALRRT 156 (353)
T ss_dssp SSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH---------------HHHHHHHHH
T ss_pred ccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH---------------HHHHHHHHH
Confidence 65321 11122211111110 00113457999999998865 334667777
Q ss_pred hhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHH
Q 014376 306 MDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQ 358 (426)
Q Consensus 306 ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~ 358 (426)
++.. ..+..++.++|.+..+++++++|+. .+.+++|+.++...+++..+.
T Consensus 157 le~~--~~~~~~il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~~ 206 (353)
T 1sxj_D 157 METY--SGVTRFCLICNYVTRIIDPLASQCS-KFRFKALDASNAIDRLRFISE 206 (353)
T ss_dssp HHHT--TTTEEEEEEESCGGGSCHHHHHHSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred HHhc--CCCceEEEEeCchhhCcchhhccCc-eEEeCCCCHHHHHHHHHHHHH
Confidence 7764 3455666677888899999999995 889999999999988887664
No 64
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.44 E-value=1.3e-12 Score=130.08 Aligned_cols=171 Identities=16% Similarity=0.172 Sum_probs=117.5
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCc--EEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEec
Q 014376 159 ESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNR--IVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (426)
Q Consensus 159 ~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~--~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (426)
+++++.++..+.|..++..... +-. +. .++|+||||+|||++++++++.+.... +..++++++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~----~~~------~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-----~~~~~~i~~ 81 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLR----NPG------HHYPRATLLGRPGTGKTVTLRKLWELYKDKT-----TARFVYING 81 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHH----STT------SSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-----CCEEEEEET
T ss_pred CCCCChHHHHHHHHHHHHHHHc----CCC------CCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-----CeeEEEEeC
Confidence 5688999988888888764332 111 23 799999999999999999999884321 345688887
Q ss_pred cccccc--cc-------c----chHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHH
Q 014376 237 HSLFSK--WF-------S----ESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALL 303 (426)
Q Consensus 237 ~~l~~~--~~-------~----e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll 303 (426)
....+. .+ + ..+.....+++.+...+.....+.+|+|||++.+.. ..+..|+
T Consensus 82 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~---------------~~~~~L~ 146 (389)
T 1fnn_A 82 FIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAP---------------DILSTFI 146 (389)
T ss_dssp TTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCH---------------HHHHHHH
T ss_pred ccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccch---------------HHHHHHH
Confidence 654321 00 0 001112334444444444445688999999998821 4566777
Q ss_pred HHhhhhcC--CCcEEEEEEeCCC---CcCCHHHhcccCe-EEEeCCCCHHHHHHHHHHHHHH
Q 014376 304 TQMDKLKS--SPNVIILTTSNIT---AAIDIAFVDRADI-KAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 304 ~~ld~l~~--~~~viVi~TtN~~---~~ld~al~~R~~~-~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
..++.... ..++.||+++|.+ ..+++.+.+||.. .+.+++++.++..++++..+..
T Consensus 147 ~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~ 208 (389)
T 1fnn_A 147 RLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKA 208 (389)
T ss_dssp HHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHh
Confidence 77765433 1466777777766 5578888999875 8999999999999999988865
No 65
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.44 E-value=1.1e-13 Score=143.21 Aligned_cols=158 Identities=20% Similarity=0.202 Sum_probs=93.0
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecc-
Q 014376 159 ESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH- 237 (426)
Q Consensus 159 ~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~- 237 (426)
..++|.+++++.+...+.. +.++||+||||||||++|+++|+.++. ...+..+++.
T Consensus 22 ~~ivGq~~~i~~l~~al~~----------------~~~VLL~GpPGtGKT~LAraLa~~l~~-------~~~f~~~~~~~ 78 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS----------------GESVFLLGPPGIAKSLIARRLKFAFQN-------ARAFEYLMTRF 78 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH----------------TCEEEEECCSSSSHHHHHHHGGGGBSS-------CCEEEEECCTT
T ss_pred hhhHHHHHHHHHHHHHHhc----------------CCeeEeecCchHHHHHHHHHHHHHHhh-------hhHHHHHHHhc
Confidence 4577888888776655432 457999999999999999999998742 1222333332
Q ss_pred ----ccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhh----
Q 014376 238 ----SLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL---- 309 (426)
Q Consensus 238 ----~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l---- 309 (426)
++++.+.+..... ...|..+..- ....+.|+||||++.+.. .+.+.|+..|+.-
T Consensus 79 ~t~~dL~G~~~~~~~~~-~g~~~~~~~g--~l~~~~IL~IDEI~r~~~---------------~~q~~LL~~lee~~v~i 140 (500)
T 3nbx_X 79 STPEEVFGPLSIQALKD-EGRYERLTSG--YLPEAEIVFLDEIWKAGP---------------AILNTLLTAINERQFRN 140 (500)
T ss_dssp CCHHHHHCCBC-----------CBCCTT--SGGGCSEEEEESGGGCCH---------------HHHHHHHHHHHSSEEEC
T ss_pred CCHHHhcCcccHHHHhh-chhHHhhhcc--CCCcceeeeHHhHhhhcH---------------HHHHHHHHHHHHHhccC
Confidence 2222111111000 0011100000 001346899999986543 5667788888632
Q ss_pred ----cCCCcEEEEEEeCCC-C--cCCHHHhcccCeEEEeCCCCH-HHHHHHHHHHH
Q 014376 310 ----KSSPNVIILTTSNIT-A--AIDIAFVDRADIKAYVGPPTL-QARYEILRSCL 357 (426)
Q Consensus 310 ----~~~~~viVi~TtN~~-~--~ld~al~~R~~~~i~i~~p~~-~~r~~Il~~~l 357 (426)
...+..++|++||.. + .+.+++++||...+.+++|+. +++.+|++...
T Consensus 141 ~G~~~~~~~~~iI~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 141 GAHVEKIPMRLLVAASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp SSSEEECCCCEEEEEESSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCC
T ss_pred CCCcCCcchhhhhhccccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhccc
Confidence 111222445555643 3 145699999999999999987 67788887543
No 66
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.43 E-value=2.3e-13 Score=148.27 Aligned_cols=178 Identities=19% Similarity=0.293 Sum_probs=122.3
Q ss_pred cchhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccc-cCCCCcceEE
Q 014376 154 FDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRF-SSRYPQCQLV 232 (426)
Q Consensus 154 ~~~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~-~~~~~~~~~i 232 (426)
-.+.|+.++|.++..+++.+.+.. . .+.+++|+||||||||++++++++.+.... .....++.++
T Consensus 181 ~~~~~d~~iGr~~~i~~l~~~l~~------~--------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~ 246 (758)
T 1r6b_X 181 RVGGIDPLIGREKELERAIQVLCR------R--------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIY 246 (758)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTS------S--------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEE
T ss_pred hcCCCCCccCCHHHHHHHHHHHhc------c--------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEE
Confidence 345788899999888887776532 1 146799999999999999999999884321 0112245667
Q ss_pred EEeccccc--cccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc
Q 014376 233 EVNAHSLF--SKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK 310 (426)
Q Consensus 233 ~i~~~~l~--~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~ 310 (426)
.++...+. .++.++....+..+|..+.. ..+++|+|||++.+..... .........+. +..+.
T Consensus 247 ~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~-----~~~~iL~IDEi~~l~~~~~------~~~~~~~~~~~----L~~~l 311 (758)
T 1r6b_X 247 SLDIGSLLAGTKYRGDFEKRFKALLKQLEQ-----DTNSILFIDEIHTIIGAGA------ASGGQVDAANL----IKPLL 311 (758)
T ss_dssp ECCCC---CCCCCSSCHHHHHHHHHHHHSS-----SSCEEEEETTTTTTTTSCC------SSSCHHHHHHH----HSSCS
T ss_pred EEcHHHHhccccccchHHHHHHHHHHHHHh-----cCCeEEEEechHHHhhcCC------CCcchHHHHHH----HHHHH
Confidence 77766665 35667777777777776643 3579999999999865321 11112233333 33334
Q ss_pred CCCcEEEEEEeCCCC-----cCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHHHH
Q 014376 311 SSPNVIILTTSNITA-----AIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELI 361 (426)
Q Consensus 311 ~~~~viVi~TtN~~~-----~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~l~ 361 (426)
..+.+.+|+++|.++ .+|+++.+||+ .+.++.|+.+++.+|++.......
T Consensus 312 ~~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~ 366 (758)
T 1r6b_X 312 SSGKIRVIGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYE 366 (758)
T ss_dssp SSCCCEEEEEECHHHHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHH
T ss_pred hCCCeEEEEEeCchHHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHH
Confidence 457778888888653 36899999997 799999999999999998876643
No 67
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.43 E-value=4.5e-12 Score=124.90 Aligned_cols=157 Identities=20% Similarity=0.262 Sum_probs=103.5
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEec
Q 014376 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (426)
Q Consensus 157 ~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (426)
.|+.+++++.+++.+...+..... .+.. ..+++|+||||+|||||++++|+.++.++ ...++
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~---~~~~------~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~---------~~~sg 84 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKM---RGEV------LDHVLLAGPPGLGKTTLAHIIASELQTNI---------HVTSG 84 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHH---HTCC------CCCEEEESSTTSSHHHHHHHHHHHHTCCE---------EEEET
T ss_pred cHHHccCcHHHHHHHHHHHHHHHh---cCCC------CCeEEEECCCCCcHHHHHHHHHHHhCCCE---------EEEec
Confidence 456677888888777766543321 1211 25699999999999999999999996443 33333
Q ss_pred cccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc------
Q 014376 237 HSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK------ 310 (426)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~------ 310 (426)
..+. .+..+..++.. .....|++|||++.+.... .+.++..++...
T Consensus 85 ~~~~------~~~~l~~~~~~-------~~~~~v~~iDE~~~l~~~~---------------~e~L~~~~~~~~~~i~~~ 136 (334)
T 1in4_A 85 PVLV------KQGDMAAILTS-------LERGDVLFIDEIHRLNKAV---------------EELLYSAIEDFQIDIMIG 136 (334)
T ss_dssp TTCC------SHHHHHHHHHH-------CCTTCEEEEETGGGCCHHH---------------HHHHHHHHHTSCCCC---
T ss_pred hHhc------CHHHHHHHHHH-------ccCCCEEEEcchhhcCHHH---------------HHHHHHHHHhcccceeec
Confidence 2221 12223222221 1345799999999875422 222333332211
Q ss_pred ----------CCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 311 ----------SSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 311 ----------~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
.-..+.++.+++.+..++.++++||+..+.+++++.+++.++++...+.
T Consensus 137 ~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~ 195 (334)
T 1in4_A 137 KGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASL 195 (334)
T ss_dssp ------------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred cCcccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHH
Confidence 0123566678888999999999999999999999999999999987764
No 68
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.43 E-value=6e-13 Score=131.97 Aligned_cols=176 Identities=16% Similarity=0.228 Sum_probs=114.3
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccc
Q 014376 159 ESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (426)
Q Consensus 159 ~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (426)
+++++.++..+.|.+++..... +- .++.++|+||+|+|||+|++++++.+...... +..++.+++..
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~----~~------~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~---~~~~~~i~~~~ 86 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYR----EE------KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLG---KFKHVYINTRQ 86 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGG----TC------CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCS---SCEEEEEEHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc----CC------CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC---CceEEEEECCC
Confidence 5688988888888776543211 11 14679999999999999999999988432210 34567888654
Q ss_pred ccccc-------------ccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHH
Q 014376 239 LFSKW-------------FSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQ 305 (426)
Q Consensus 239 l~~~~-------------~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ 305 (426)
..... ....+.....++..+...+.....+.+|+|||++.+..... ...+..++..
T Consensus 87 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~-----------~~~l~~l~~~ 155 (386)
T 2qby_A 87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN-----------DDILYKLSRI 155 (386)
T ss_dssp HCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC-----------STHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc-----------CHHHHHHhhc
Confidence 32100 00011112333444444444444589999999999975320 1355666666
Q ss_pred hhhhcCCCcEEEEEEeCCC---CcCCHHHhcccC-eEEEeCCCCHHHHHHHHHHHHHH
Q 014376 306 MDKLKSSPNVIILTTSNIT---AAIDIAFVDRAD-IKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 306 ld~l~~~~~viVi~TtN~~---~~ld~al~~R~~-~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
++.+ ...++.+|+++|.. ..+++.+.+||. ..+.+++++.++..++++..+..
T Consensus 156 ~~~~-~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~ 212 (386)
T 2qby_A 156 NSEV-NKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQM 212 (386)
T ss_dssp HHSC-CC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHH
T ss_pred hhhc-CCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHh
Confidence 6544 34566777777765 456888889986 48999999999999999987764
No 69
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.43 E-value=1.5e-12 Score=123.65 Aligned_cols=166 Identities=17% Similarity=0.162 Sum_probs=103.4
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEec
Q 014376 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (426)
Q Consensus 157 ~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (426)
.|++++|.+...+.+.+.+.... .. +..++|+||||||||++|+++++.+.. .+..++.+++
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~---~~---------~~~vll~G~~GtGKt~la~~i~~~~~~------~~~~~~~v~~ 65 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLA---PL---------DKPVLIIGERGTGKELIASRLHYLSSR------WQGPFISLNC 65 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHT---TS---------CSCEEEECCTTSCHHHHHHHHHHTSTT------TTSCEEEEEG
T ss_pred ccccceeCCHHHHHHHHHHHHHh---CC---------CCCEEEECCCCCcHHHHHHHHHHhcCc------cCCCeEEEec
Confidence 57889999888888777665321 11 345999999999999999999998742 2345789998
Q ss_pred cccccccccchHHHHHHHHH-------HH----HHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHH
Q 014376 237 HSLFSKWFSESGKLVAKLFQ-------KI----QEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQ 305 (426)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~-------~~----~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ 305 (426)
..+..... ...+|. .. ...+.. ....+|+|||++.+.. ..+..|+..
T Consensus 66 ~~~~~~~~------~~~l~g~~~~~~~g~~~~~~~~l~~-a~~~~l~lDEi~~l~~---------------~~q~~Ll~~ 123 (265)
T 2bjv_A 66 AALNENLL------DSELFGHEAGAFTGAQKRHPGRFER-ADGGTLFLDELATAPM---------------MVQEKLLRV 123 (265)
T ss_dssp GGSCHHHH------HHHHHCCC---------CCCCHHHH-TTTSEEEEESGGGSCH---------------HHHHHHHHH
T ss_pred CCCChhHH------HHHhcCCcccccccccccccchhhh-cCCcEEEEechHhcCH---------------HHHHHHHHH
Confidence 87632110 111111 00 001111 2457999999998865 345667777
Q ss_pred hhhhc---------CCCcEEEEEEeCCC-------CcCCHHHhcccC-eEEEeCCCCH--HHHHHHHHHHHHHHHH
Q 014376 306 MDKLK---------SSPNVIILTTSNIT-------AAIDIAFVDRAD-IKAYVGPPTL--QARYEILRSCLQELIR 362 (426)
Q Consensus 306 ld~l~---------~~~~viVi~TtN~~-------~~ld~al~~R~~-~~i~i~~p~~--~~r~~Il~~~l~~l~~ 362 (426)
++.-. ...++.||+|+|.. ..+++++.+||. ..+.+|+... ++...++++++++...
T Consensus 124 l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~ 199 (265)
T 2bjv_A 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCR 199 (265)
T ss_dssp HHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHH
T ss_pred HHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHH
Confidence 76421 12457788888874 246889999995 4667777664 5667777777776654
No 70
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.42 E-value=1.1e-13 Score=150.82 Aligned_cols=158 Identities=19% Similarity=0.274 Sum_probs=106.9
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccc-cCCCCcceEEEE
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRF-SSRYPQCQLVEV 234 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~-~~~~~~~~~i~i 234 (426)
+.++.++|.++..+++...+.. . .+.++||+||||||||++|+++|+.+.... .....++.++.+
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~------~--------~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~ 242 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSR------R--------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHC------S--------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred CCCCCccCchHHHHHHHHHHhC------C--------CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEe
Confidence 5678899999999888877542 1 135699999999999999999999983211 111234556666
Q ss_pred eccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCc
Q 014376 235 NAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPN 314 (426)
Q Consensus 235 ~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~ 314 (426)
++ ..+|.|+....+..+|..+.. ..+++|||| +. ....+.|+..++ .+.
T Consensus 243 ~~---g~~~~G~~e~~l~~~~~~~~~-----~~~~iLfiD--------------~~-----~~~~~~L~~~l~----~~~ 291 (758)
T 3pxi_A 243 DM---GTKYRGEFEDRLKKVMDEIRQ-----AGNIILFID--------------AA-----IDASNILKPSLA----RGE 291 (758)
T ss_dssp -------------CTTHHHHHHHHHT-----CCCCEEEEC--------------C-------------CCCTT----SSS
T ss_pred cc---cccccchHHHHHHHHHHHHHh-----cCCEEEEEc--------------Cc-----hhHHHHHHHHHh----cCC
Confidence 66 445666767777888887765 477899999 00 123344444433 567
Q ss_pred EEEEEEeCCCC-----cCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 315 VIILTTSNITA-----AIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 315 viVi~TtN~~~-----~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
+.+|++||... .+|+++++|| ..+.++.|+.+++.+|++.....
T Consensus 292 v~~I~at~~~~~~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 292 LQCIGATTLDEYRKYIEKDAALERRF-QPIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp CEEEEECCTTTTHHHHTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTTTT
T ss_pred EEEEeCCChHHHHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHH
Confidence 88899999888 6899999999 56999999999999999976554
No 71
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.41 E-value=3.4e-12 Score=123.77 Aligned_cols=161 Identities=19% Similarity=0.166 Sum_probs=111.8
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEec
Q 014376 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (426)
Q Consensus 157 ~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (426)
.|++++|.+.+++.|.+++.. +-. .+++|+||+|+|||++++++++.+.... ....++++++
T Consensus 19 ~~~~~~g~~~~~~~l~~~l~~-------~~~-------~~~ll~G~~G~GKt~la~~l~~~l~~~~----~~~~~~~~~~ 80 (323)
T 1sxj_B 19 VLSDIVGNKETIDRLQQIAKD-------GNM-------PHMIISGMPGIGKTTSVHCLAHELLGRS----YADGVLELNA 80 (323)
T ss_dssp SGGGCCSCTHHHHHHHHHHHS-------CCC-------CCEEEECSTTSSHHHHHHHHHHHHHGGG----HHHHEEEECT
T ss_pred CHHHHHCCHHHHHHHHHHHHc-------CCC-------CeEEEECcCCCCHHHHHHHHHHHhcCCc----ccCCEEEecC
Confidence 577899999999988877542 211 2399999999999999999999974211 1234577776
Q ss_pred cccccccccchHHHHHHHHHHHHHHH-Hh-ccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCc
Q 014376 237 HSLFSKWFSESGKLVAKLFQKIQEMV-EE-ENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPN 314 (426)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~~~~~~~-~~-~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~ 314 (426)
.+..+ ...++.++..+.... .. ...+.+++|||++.+.. ...+.|+..++. ...+
T Consensus 81 ~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~---------------~~~~~L~~~le~--~~~~ 137 (323)
T 1sxj_B 81 SDDRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA---------------GAQQALRRTMEL--YSNS 137 (323)
T ss_dssp TSCCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH---------------HHHHTTHHHHHH--TTTT
T ss_pred ccccC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH---------------HHHHHHHHHHhc--cCCC
Confidence 55321 223333333222100 00 12478999999998854 234566777665 3456
Q ss_pred EEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 315 VIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 315 viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
+++|.++|.+..+.+++.+|+. .+.+++|+.++..++++..+.+
T Consensus 138 ~~~il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~ 181 (323)
T 1sxj_B 138 TRFAFACNQSNKIIEPLQSQCA-ILRYSKLSDEDVLKRLLQIIKL 181 (323)
T ss_dssp EEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHH
T ss_pred ceEEEEeCChhhchhHHHhhce-EEeecCCCHHHHHHHHHHHHHH
Confidence 7777788888899999999984 8999999999999999887754
No 72
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.40 E-value=6e-13 Score=128.90 Aligned_cols=162 Identities=21% Similarity=0.222 Sum_probs=109.8
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEe
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVN 235 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~ 235 (426)
..|++++|++.+++.|.+++.. +- ..+++|+||||+|||++++++++.+... .....+++++
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~-------~~-------~~~~ll~G~~G~GKt~la~~l~~~l~~~----~~~~~~~~~~ 75 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYVER-------KN-------IPHLLFSGPPGTGKTATAIALARDLFGE----NWRDNFIEMN 75 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTTTT-------TC-------CCCEEEESSSSSSHHHHHHHHHHHHHTT----CHHHHCEEEE
T ss_pred CCHHHHhCCHHHHHHHHHHHhC-------CC-------CCeEEEECcCCcCHHHHHHHHHHHhcCC----cccCCeEEEe
Confidence 3578899999998888776532 21 1239999999999999999999987321 1123457788
Q ss_pred ccccccccccchHHHHHHHHHHHHHHHH-hccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCc
Q 014376 236 AHSLFSKWFSESGKLVAKLFQKIQEMVE-EENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPN 314 (426)
Q Consensus 236 ~~~l~~~~~~e~~~~v~~~f~~~~~~~~-~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~ 314 (426)
+.+..+. ......+. ....... ....+.+++|||+|.+.. ...+.|+..++. ...+
T Consensus 76 ~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~vliiDe~~~l~~---------------~~~~~L~~~le~--~~~~ 132 (319)
T 2chq_A 76 ASDERGI--DVVRHKIK----EFARTAPIGGAPFKIIFLDEADALTA---------------DAQAALRRTMEM--YSKS 132 (319)
T ss_dssp TTSTTCT--TTSSHHHH----HHHHSCCSSSCCCEEEEEETGGGSCH---------------HHHHTTGGGTSS--SSSS
T ss_pred CccccCh--HHHHHHHH----HHHhcCCCCCCCceEEEEeCCCcCCH---------------HHHHHHHHHHHh--cCCC
Confidence 7664321 11111111 1110000 013578999999998854 234556665554 2457
Q ss_pred EEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 315 VIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 315 viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
+++|+++|.+..+.+++.+|+. .+.+++|+.+++.++++..+.+
T Consensus 133 ~~~i~~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~ 176 (319)
T 2chq_A 133 CRFILSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEK 176 (319)
T ss_dssp EEEEEEESCGGGSCHHHHTTCE-EEECCCCCHHHHHHHHHHHHHT
T ss_pred CeEEEEeCChhhcchHHHhhCe-EEEecCCCHHHHHHHHHHHHHH
Confidence 8888888999999999999985 8999999999999988877653
No 73
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.38 E-value=3.5e-12 Score=126.41 Aligned_cols=165 Identities=21% Similarity=0.277 Sum_probs=111.5
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCC---------
Q 014376 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYP--------- 227 (426)
Q Consensus 157 ~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~--------- 227 (426)
.|++++|.+.+++.|.+.+.. +-. +..++|+||+|+|||++++++++.++........
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~-------~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 80 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSL-------GRI------HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHH-------TCC------CSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHH
T ss_pred chhhccCcHHHHHHHHHHHHh-------CCC------CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Confidence 577899999999888877642 211 2468999999999999999999998643211000
Q ss_pred ------cceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHH
Q 014376 228 ------QCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNA 301 (426)
Q Consensus 228 ------~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ 301 (426)
...++.+++..- . ....++.++..+... .....+.+++|||++.+.. ...+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~--~----~~~~~~~l~~~~~~~-~~~~~~~vliiDe~~~l~~---------------~~~~~ 138 (373)
T 1jr3_A 81 EIEQGRFVDLIEIDAASR--T----KVEDTRDLLDNVQYA-PARGRFKVYLIDEVHMLSR---------------HSFNA 138 (373)
T ss_dssp HHHTSCCSSCEEEETTCS--C----CSSCHHHHHHHTTSC-CSSSSSEEEEEECGGGSCH---------------HHHHH
T ss_pred HHhccCCCceEEeccccc--C----CHHHHHHHHHHHhhc-cccCCeEEEEEECcchhcH---------------HHHHH
Confidence 012344443221 0 011233333332210 0123468999999998854 34577
Q ss_pred HHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 302 LLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 302 ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
|+..++. ...++++|.+++.+..+.+++.+|+ ..+.+++|+.++..++++..+++
T Consensus 139 Ll~~le~--~~~~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~ 193 (373)
T 1jr3_A 139 LLKTLEE--PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNE 193 (373)
T ss_dssp HHHHHHS--CCSSEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCceEEEEEeCChHhCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHH
Confidence 7777765 3457777888888888999999998 78999999999999999887765
No 74
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.36 E-value=1.2e-11 Score=121.84 Aligned_cols=156 Identities=19% Similarity=0.286 Sum_probs=106.9
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEec
Q 014376 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (426)
Q Consensus 157 ~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (426)
.|++++|++.+++.|...+.. |-- .+++|+|||||||||+++++|+.+.... ....+.++++
T Consensus 23 ~~~~~~g~~~~~~~L~~~i~~-------g~~-------~~~ll~Gp~G~GKTtla~~la~~l~~~~----~~~~~~~~~~ 84 (340)
T 1sxj_C 23 TLDEVYGQNEVITTVRKFVDE-------GKL-------PHLLFYGPPGTGKTSTIVALAREIYGKN----YSNMVLELNA 84 (340)
T ss_dssp SGGGCCSCHHHHHHHHHHHHT-------TCC-------CCEEEECSSSSSHHHHHHHHHHHHHTTS----HHHHEEEECT
T ss_pred cHHHhcCcHHHHHHHHHHHhc-------CCC-------ceEEEECCCCCCHHHHHHHHHHHHcCCC----ccceEEEEcC
Confidence 467788988888888776542 211 1299999999999999999999984221 1234566766
Q ss_pred cccccccccchHHHHHHHHHHHHHHHHh----ccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCC
Q 014376 237 HSLFSKWFSESGKLVAKLFQKIQEMVEE----ENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSS 312 (426)
Q Consensus 237 ~~l~~~~~~e~~~~v~~~f~~~~~~~~~----~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~ 312 (426)
.+..+ ...++. .+..+... .....+++|||+|.+.. ...+.|+..++.. .
T Consensus 85 ~~~~~------~~~ir~---~i~~~~~~~~~~~~~~~viiiDe~~~l~~---------------~~~~~L~~~le~~--~ 138 (340)
T 1sxj_C 85 SDDRG------IDVVRN---QIKDFASTRQIFSKGFKLIILDEADAMTN---------------AAQNALRRVIERY--T 138 (340)
T ss_dssp TSCCS------HHHHHT---HHHHHHHBCCSSSCSCEEEEETTGGGSCH---------------HHHHHHHHHHHHT--T
T ss_pred ccccc------HHHHHH---HHHHHHhhcccCCCCceEEEEeCCCCCCH---------------HHHHHHHHHHhcC--C
Confidence 54211 112222 22222211 12468999999998854 3456777777763 3
Q ss_pred CcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHH
Q 014376 313 PNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCL 357 (426)
Q Consensus 313 ~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l 357 (426)
..+.++.++|.+..+.+++++|+. .+.+.+++.++..+++...+
T Consensus 139 ~~~~~il~~n~~~~i~~~i~sR~~-~~~~~~l~~~~~~~~l~~~~ 182 (340)
T 1sxj_C 139 KNTRFCVLANYAHKLTPALLSQCT-RFRFQPLPQEAIERRIANVL 182 (340)
T ss_dssp TTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHH
T ss_pred CCeEEEEEecCccccchhHHhhce-eEeccCCCHHHHHHHHHHHH
Confidence 566677778999999999999984 78899999888888777665
No 75
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.35 E-value=4.5e-12 Score=125.06 Aligned_cols=168 Identities=18% Similarity=0.237 Sum_probs=103.5
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcc-cccCCC---------
Q 014376 157 MWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSI-RFSSRY--------- 226 (426)
Q Consensus 157 ~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~-~~~~~~--------- 226 (426)
.|++++|++.+++.|.+++. ..+- ..+++|+||||+||||+++++++.+.. ..+...
T Consensus 12 ~~~~~vg~~~~~~~l~~~~~------~~~~-------~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~ 78 (354)
T 1sxj_E 12 SLNALSHNEELTNFLKSLSD------QPRD-------LPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTA 78 (354)
T ss_dssp SGGGCCSCHHHHHHHHTTTT------CTTC-------CCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC-----------
T ss_pred CHHHhcCCHHHHHHHHHHHh------hCCC-------CCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccc
Confidence 47889999998887776541 1111 123999999999999999999996522 111000
Q ss_pred ----------CcceEEEEeccccccccccchHHHHHHHHHHHHHHH--------Hh-ccCcEEEEEechhhHHHHhhhhc
Q 014376 227 ----------PQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMV--------EE-ENNLVFVLIDEVESLAAARKAAL 287 (426)
Q Consensus 227 ----------~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~--------~~-~~~~~illIDEid~l~~~r~~~l 287 (426)
+....+.+++.... ......++.....+.... .. ...+.+++|||++.+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~------ 148 (354)
T 1sxj_E 79 SNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK------ 148 (354)
T ss_dssp -------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCH------
T ss_pred ccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCH------
Confidence 00112233322110 000112233322221100 00 13677999999988643
Q ss_pred cCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 288 SGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 288 s~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
...+.+++.++... .++.+|.++|.+..+.+++++|+ ..+.+++|+.++..++++..+++
T Consensus 149 ---------~~~~~L~~~le~~~--~~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~ 208 (354)
T 1sxj_E 149 ---------DAQAALRRTMEKYS--KNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVTN 208 (354)
T ss_dssp ---------HHHHHHHHHHHHST--TTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHhhc--CCCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHH
Confidence 35677888877643 35666666677778889999999 88999999999999999887754
No 76
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.33 E-value=3.5e-12 Score=110.31 Aligned_cols=135 Identities=15% Similarity=0.080 Sum_probs=85.3
Q ss_pred hhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccc
Q 014376 160 SLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (426)
Q Consensus 160 ~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (426)
+++|.+...+.+.+.+... ... +..++|+||||||||++|+++++.... .+..++ +++..+
T Consensus 2 ~iiG~s~~~~~~~~~~~~~---a~~---------~~~vll~G~~GtGKt~lA~~i~~~~~~------~~~~~v-~~~~~~ 62 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL---SET---------DIAVWLYGAPGTGRMTGARYLHQFGRN------AQGEFV-YRELTP 62 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH---TTC---------CSCEEEESSTTSSHHHHHHHHHHSSTT------TTSCCE-EEECCT
T ss_pred CceeCCHHHHHHHHHHHHH---hCC---------CCCEEEECCCCCCHHHHHHHHHHhCCc------cCCCEE-EECCCC
Confidence 4667777766776665432 121 345999999999999999999987632 233457 888876
Q ss_pred ccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEE
Q 014376 240 FSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILT 319 (426)
Q Consensus 240 ~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~ 319 (426)
... ......|..+ ..++++|||+|.+.. ..+..|+..|.. ...++.+|+
T Consensus 63 ~~~------~~~~~~~~~a--------~~g~l~ldei~~l~~---------------~~q~~Ll~~l~~--~~~~~~~I~ 111 (145)
T 3n70_A 63 DNA------PQLNDFIALA--------QGGTLVLSHPEHLTR---------------EQQYHLVQLQSQ--EHRPFRLIG 111 (145)
T ss_dssp TTS------SCHHHHHHHH--------TTSCEEEECGGGSCH---------------HHHHHHHHHHHS--SSCSSCEEE
T ss_pred Ccc------hhhhcHHHHc--------CCcEEEEcChHHCCH---------------HHHHHHHHHHhh--cCCCEEEEE
Confidence 543 1112223322 347899999998865 344566666633 234566777
Q ss_pred EeCCC-------CcCCHHHhcccC-eEEEeCCC
Q 014376 320 TSNIT-------AAIDIAFVDRAD-IKAYVGPP 344 (426)
Q Consensus 320 TtN~~-------~~ld~al~~R~~-~~i~i~~p 344 (426)
|||.+ ..+++.+..|+. ..+.+|+.
T Consensus 112 ~t~~~~~~~~~~~~~~~~L~~rl~~~~i~lPpL 144 (145)
T 3n70_A 112 IGDTSLVELAASNHIIAELYYCFAMTQIACLPL 144 (145)
T ss_dssp EESSCHHHHHHHSCCCHHHHHHHHHHEEECCCC
T ss_pred ECCcCHHHHHHcCCCCHHHHHHhcCCEEeCCCC
Confidence 77764 235677777763 35677664
No 77
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.33 E-value=1.1e-11 Score=120.47 Aligned_cols=162 Identities=19% Similarity=0.223 Sum_probs=103.4
Q ss_pred hhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccc
Q 014376 160 SLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (426)
Q Consensus 160 ~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (426)
+++|.....+.+.+.+.... .. +..+||+||||||||++|+++++.... .+..++.++|..+
T Consensus 3 ~iig~s~~~~~~~~~~~~~a---~~---------~~~vLi~Ge~GtGKt~lAr~i~~~~~~------~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVA---PS---------DATVLIHGDSGTGKELVARALHACSAR------SDRPLVTLNCAAL 64 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHC---ST---------TSCEEEESCTTSCHHHHHHHHHHHSSC------SSSCCCEEECSSC
T ss_pred CcEECCHHHHHHHHHHHHHh---CC---------CCcEEEECCCCchHHHHHHHHHHhCcc------cCCCeEEEeCCCC
Confidence 46777777777776654321 11 345999999999999999999997632 2345688998776
Q ss_pred ccc-----cccch-----HH--HHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhh
Q 014376 240 FSK-----WFSES-----GK--LVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMD 307 (426)
Q Consensus 240 ~~~-----~~~e~-----~~--~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld 307 (426)
... .++.. +. .....|.. ...++|||||++.+.. ..+..|+..++
T Consensus 65 ~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~--------a~~g~L~LDEi~~l~~---------------~~q~~Ll~~l~ 121 (304)
T 1ojl_A 65 NESLLESELFGHEKGAFTGADKRREGRFVE--------ADGGTLFLDEIGDISP---------------LMQVRLLRAIQ 121 (304)
T ss_dssp CHHHHHHHHTCCCSSCCC---CCCCCHHHH--------HTTSEEEEESCTTCCH---------------HHHHHHHHHHH
T ss_pred ChHHHHHHhcCccccccCchhhhhcCHHHh--------cCCCEEEEeccccCCH---------------HHHHHHHHHHh
Confidence 321 11110 00 00111222 1347899999998854 34566777776
Q ss_pred hhc---------CCCcEEEEEEeCCC-------CcCCHHHhcccC-eEEEeCCCC--HHHHHHHHHHHHHHHHH
Q 014376 308 KLK---------SSPNVIILTTSNIT-------AAIDIAFVDRAD-IKAYVGPPT--LQARYEILRSCLQELIR 362 (426)
Q Consensus 308 ~l~---------~~~~viVi~TtN~~-------~~ld~al~~R~~-~~i~i~~p~--~~~r~~Il~~~l~~l~~ 362 (426)
... ...++.||++||.. ..+++.+..|+. ..+.+|++. .++...++++++.+...
T Consensus 122 ~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~ 195 (304)
T 1ojl_A 122 EREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAE 195 (304)
T ss_dssp SSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHH
T ss_pred cCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHH
Confidence 532 12357788888875 236788889984 456777776 45667788888877654
No 78
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.31 E-value=1.9e-12 Score=111.74 Aligned_cols=132 Identities=11% Similarity=0.138 Sum_probs=84.8
Q ss_pred hhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccc
Q 014376 160 SLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (426)
Q Consensus 160 ~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (426)
+++|.+...+++.+.+.... .. +..++|+||||||||++|+++++... .++.+++..+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~---~~---------~~~vll~G~~GtGKt~lA~~i~~~~~----------~~~~~~~~~~ 62 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA---KR---------TSPVFLTGEAGSPFETVARYFHKNGT----------PWVSPARVEY 62 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH---TC---------SSCEEEEEETTCCHHHHHGGGCCTTS----------CEECCSSTTH
T ss_pred CceeCCHHHHHHHHHHHHHh---CC---------CCcEEEECCCCccHHHHHHHHHHhCC----------CeEEechhhC
Confidence 36777777777777765421 11 34599999999999999999988764 4477888776
Q ss_pred ccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEE
Q 014376 240 FSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILT 319 (426)
Q Consensus 240 ~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~ 319 (426)
...+ ....|.. ...++++|||++.+.. ..+..++..++... ..++.+|+
T Consensus 63 ~~~~-------~~~~~~~--------a~~~~l~lDei~~l~~---------------~~q~~Ll~~l~~~~-~~~~~iI~ 111 (143)
T 3co5_A 63 LIDM-------PMELLQK--------AEGGVLYVGDIAQYSR---------------NIQTGITFIIGKAE-RCRVRVIA 111 (143)
T ss_dssp HHHC-------HHHHHHH--------TTTSEEEEEECTTCCH---------------HHHHHHHHHHHHHT-TTTCEEEE
T ss_pred ChHh-------hhhHHHh--------CCCCeEEEeChHHCCH---------------HHHHHHHHHHHhCC-CCCEEEEE
Confidence 4332 2222332 2357999999998865 23455666666543 34566667
Q ss_pred EeCCC-Cc----CCHHHhccc-CeEEEeCCC
Q 014376 320 TSNIT-AA----IDIAFVDRA-DIKAYVGPP 344 (426)
Q Consensus 320 TtN~~-~~----ld~al~~R~-~~~i~i~~p 344 (426)
|||.. .. +++.+..|+ ...+.+|+.
T Consensus 112 ~tn~~~~~~~~~~~~~L~~rl~~~~i~lPpL 142 (143)
T 3co5_A 112 SCSYAAGSDGISCEEKLAGLFSESVVRIPPL 142 (143)
T ss_dssp EEEECTTTC--CHHHHHHHHSSSEEEEECCC
T ss_pred ecCCCHHHHHhCccHHHHHHhcCcEEeCCCC
Confidence 77654 22 456677785 446777764
No 79
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.27 E-value=3.4e-13 Score=142.77 Aligned_cols=167 Identities=16% Similarity=0.173 Sum_probs=98.6
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHHHhhcCCC----CccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCC---Ccc
Q 014376 157 MWESLIYESGLKQRLLHYAASALMFAEKGVN----PFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRY---PQC 229 (426)
Q Consensus 157 ~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~----~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~---~~~ 229 (426)
+-..++|++.+|+.+...+. .|.. ...+..+.++||+||||||||+||+++|+.++....... ...
T Consensus 293 l~~~I~G~e~vk~al~~~l~-------~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~ 365 (595)
T 3f9v_A 293 IAPSIYGHWELKEALALALF-------GGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAA 365 (595)
T ss_dssp TSSTTSCCHHHHHHHTTTTT-------CCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTT
T ss_pred hcchhcChHHHHHHHHHHHh-------CCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccc
Confidence 34567788888776643321 1110 011222337999999999999999999998865432110 001
Q ss_pred eEEEEecc-ccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhh
Q 014376 230 QLVEVNAH-SLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK 308 (426)
Q Consensus 230 ~~i~i~~~-~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~ 308 (426)
++..-... .....+....+. +.. ...++++|||++.+.. ...+.|+..|+.
T Consensus 366 ~l~~~~~~~~~~g~~~~~~G~-----l~~--------A~~gil~IDEid~l~~---------------~~q~~Ll~~le~ 417 (595)
T 3f9v_A 366 GLTAAVVREKGTGEYYLEAGA-----LVL--------ADGGIAVIDEIDKMRD---------------EDRVAIHEAMEQ 417 (595)
T ss_dssp TSEEECSSGGGTSSCSEEECH-----HHH--------HSSSEECCTTTTCCCS---------------HHHHHHHHHHHS
T ss_pred cccceeeeccccccccccCCe-----eEe--------cCCCcEEeehhhhCCH---------------hHhhhhHHHHhC
Confidence 11111000 011111111111 111 1457999999998743 355677777764
Q ss_pred hc-----------CCCcEEEEEEeCCCC-------------cCCHHHhcccCe-EEEeCCCCHHHHHHHHHHHHHH
Q 014376 309 LK-----------SSPNVIILTTSNITA-------------AIDIAFVDRADI-KAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 309 l~-----------~~~~viVi~TtN~~~-------------~ld~al~~R~~~-~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
-. .+.++.||+|+|... .+++++++|||. .+..+.|+.+ ...|.++.+..
T Consensus 418 ~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 418 QTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp SSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred CEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 21 124688999999986 789999999985 4566677777 77777666543
No 80
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.25 E-value=9.7e-11 Score=115.28 Aligned_cols=141 Identities=16% Similarity=0.217 Sum_probs=94.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccccCC------C---------CcceEEEEeccccccccccchHHHHHHHHHHHH
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSR------Y---------PQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQ 259 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~------~---------~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~ 259 (426)
..+||+||+|+|||++++++|+.+....... + .+..+..++..+- +. ......++.+.+.+.
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-~~--~~~i~~ir~l~~~~~ 101 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-KN--TLGVDAVREVTEKLN 101 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT-CS--SBCHHHHHHHHHHTT
T ss_pred eeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc-CC--CCCHHHHHHHHHHHh
Confidence 5699999999999999999999986432100 0 0012344443210 00 111233444444332
Q ss_pred HHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEE
Q 014376 260 EMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKA 339 (426)
Q Consensus 260 ~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i 339 (426)
.. .......|++|||+|.+.. ...|+|++.++. ...++++|.++|.++.+.+++++|+ ..+
T Consensus 102 ~~-~~~~~~kvviIdead~l~~---------------~a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~ti~SRc-~~~ 162 (334)
T 1a5t_A 102 EH-ARLGGAKVVWVTDAALLTD---------------AAANALLKTLEE--PPAETWFFLATREPERLLATLRSRC-RLH 162 (334)
T ss_dssp SC-CTTSSCEEEEESCGGGBCH---------------HHHHHHHHHHTS--CCTTEEEEEEESCGGGSCHHHHTTS-EEE
T ss_pred hc-cccCCcEEEEECchhhcCH---------------HHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHhhcc-eee
Confidence 11 0123568999999998864 356888888875 4457788888888899999999998 579
Q ss_pred EeCCCCHHHHHHHHHHHH
Q 014376 340 YVGPPTLQARYEILRSCL 357 (426)
Q Consensus 340 ~i~~p~~~~r~~Il~~~l 357 (426)
.+++|+.++..++++...
T Consensus 163 ~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 163 YLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp ECCCCCHHHHHHHHHHHC
T ss_pred eCCCCCHHHHHHHHHHhc
Confidence 999999999988887653
No 81
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.22 E-value=7.8e-11 Score=114.62 Aligned_cols=152 Identities=10% Similarity=0.105 Sum_probs=101.9
Q ss_pred chhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccc
Q 014376 163 YESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSK 242 (426)
Q Consensus 163 ~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~ 242 (426)
|++++.+.|.+++.. |- ...+|||||||+|||++++++|+.++. ... .+..++++++.+-
T Consensus 1 g~~~~~~~L~~~i~~-------~~-------~~~~Lf~Gp~G~GKtt~a~~la~~~~~-~~~--~~~d~~~l~~~~~--- 60 (305)
T 2gno_A 1 GAKDQLETLKRIIEK-------SE-------GISILINGEDLSYPREVSLELPEYVEK-FPP--KASDVLEIDPEGE--- 60 (305)
T ss_dssp ---CHHHHHHHHHHT-------CS-------SEEEEEECSSSSHHHHHHHHHHHHHHT-SCC--CTTTEEEECCSSS---
T ss_pred ChHHHHHHHHHHHHC-------CC-------CcEEEEECCCCCCHHHHHHHHHHhCch-hhc--cCCCEEEEcCCcC---
Confidence 345566666666542 21 146999999999999999999987531 100 1234566665421
Q ss_pred cccchHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeC
Q 014376 243 WFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSN 322 (426)
Q Consensus 243 ~~~e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN 322 (426)
......++.+.+.+.... ......|++|||+|.+.. ...|+|++.|+. +.+++++|.+++
T Consensus 61 --~~~id~ir~li~~~~~~p-~~~~~kvviIdead~lt~---------------~a~naLLk~LEe--p~~~t~fIl~t~ 120 (305)
T 2gno_A 61 --NIGIDDIRTIKDFLNYSP-ELYTRKYVIVHDCERMTQ---------------QAANAFLKALEE--PPEYAVIVLNTR 120 (305)
T ss_dssp --CBCHHHHHHHHHHHTSCC-SSSSSEEEEETTGGGBCH---------------HHHHHTHHHHHS--CCTTEEEEEEES
T ss_pred --CCCHHHHHHHHHHHhhcc-ccCCceEEEeccHHHhCH---------------HHHHHHHHHHhC--CCCCeEEEEEEC
Confidence 112234555555543210 113458999999999865 456889999875 456777777778
Q ss_pred CCCcCCHHHhcccCeEEEeCCCCHHHHHHHHHHHH
Q 014376 323 ITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCL 357 (426)
Q Consensus 323 ~~~~ld~al~~R~~~~i~i~~p~~~~r~~Il~~~l 357 (426)
.+..+.+++++| .+.+++|+.++..++++..+
T Consensus 121 ~~~kl~~tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 121 RWHYLLPTIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp CGGGSCHHHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred ChHhChHHHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 888999999999 78899999999888887765
No 82
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.13 E-value=3.1e-10 Score=113.80 Aligned_cols=184 Identities=17% Similarity=0.169 Sum_probs=111.3
Q ss_pred hhhhchhhHHHHHHHHH-HHHHHHhhcCCCCccccCCcEEEE--EcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEe
Q 014376 159 ESLIYESGLKQRLLHYA-ASALMFAEKGVNPFLVSWNRIVLL--HGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVN 235 (426)
Q Consensus 159 ~~lv~~~~~k~~L~~~~-~~~~~~~~~g~~~~~i~~~~~vLL--~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~ 235 (426)
+.+++.++..+.|.+++ .... .+.. ..+..++| +||+|+|||+|++.+++.+.........+..++.++
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~----~~~~----~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLL----SGAG----LSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHH----TSSC----BCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCChHHHHHHHHHHHhHHHh----cCCC----CCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 56888888888887776 4321 1200 01467999 999999999999999998753210001134567777
Q ss_pred ccccccc------c---cc----chHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHH
Q 014376 236 AHSLFSK------W---FS----ESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNAL 302 (426)
Q Consensus 236 ~~~l~~~------~---~~----e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~l 302 (426)
+....+. . ++ ..+.....++..+...+.....+.+|+|||++.+...+ ......+..+
T Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~---------~~~~~~l~~l 164 (412)
T 1w5s_A 94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSP---------RIAAEDLYTL 164 (412)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCT---------TSCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhcc---------CcchHHHHHH
Confidence 6432110 0 00 00101123344444444333568999999999986421 0112445555
Q ss_pred HHHhhhhcC-C--CcEEEEEEeCCCCc---CC---HHHhcccCeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 303 LTQMDKLKS-S--PNVIILTTSNITAA---ID---IAFVDRADIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 303 l~~ld~l~~-~--~~viVi~TtN~~~~---ld---~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
+..+..+.. . .++.+|++++.+.. ++ +.+.+|+...+.+++++.++..++++..+..
T Consensus 165 ~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~ 230 (412)
T 1w5s_A 165 LRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAEL 230 (412)
T ss_dssp HTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHh
Confidence 555554431 2 56777777765542 34 5666788777999999999999999877654
No 83
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.13 E-value=9.6e-11 Score=124.39 Aligned_cols=49 Identities=33% Similarity=0.424 Sum_probs=40.5
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 156 GMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 156 ~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
..|+.++|++.+++.+...+.. ++.++|+|||||||||++++|++.+..
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~----------------g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQ----------------KRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHT----------------TCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred cccceEECchhhHhhccccccC----------------CCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 4688999999988777766532 456999999999999999999998853
No 84
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.12 E-value=5.9e-11 Score=105.88 Aligned_cols=110 Identities=15% Similarity=0.099 Sum_probs=61.3
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHH--HHHHHHhccCcE
Q 014376 192 SWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQK--IQEMVEEENNLV 269 (426)
Q Consensus 192 ~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~--~~~~~~~~~~~~ 269 (426)
..+++++|+||||||||||++++++.+.... +..++.++..++...+ ...+.. ..........+.
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~-----g~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 102 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKAIYEKK-----GIRGYFFDTKDLIFRL--------KHLMDEGKDTKFLKTVLNSP 102 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHHHHHHS-----CCCCCEEEHHHHHHHH--------HHHHHHTCCSHHHHHHHTCS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHHc-----CCeEEEEEHHHHHHHH--------HHHhcCchHHHHHHHhcCCC
Confidence 3478899999999999999999999984221 1122445544433211 111110 001111123678
Q ss_pred EEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCcC
Q 014376 270 FVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAI 327 (426)
Q Consensus 270 illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~l 327 (426)
+++|||++... .+......+...++.....+..+|++|+..++.+
T Consensus 103 llilDE~~~~~-------------~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~~ 147 (180)
T 3ec2_A 103 VLVLDDLGSER-------------LSDWQRELISYIITYRYNNLKSTIITTNYSLQRE 147 (180)
T ss_dssp EEEEETCSSSC-------------CCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC-
T ss_pred EEEEeCCCCCc-------------CCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhHh
Confidence 99999987431 1112334455556555545666666666555553
No 85
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.07 E-value=2.1e-10 Score=99.73 Aligned_cols=103 Identities=16% Similarity=0.239 Sum_probs=69.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEE
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLI 273 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illI 273 (426)
++.++|+||+|+|||||++++++.+.. .+...+++++.++... .+ ...+.+++|
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~------~g~~~~~~~~~~~~~~-----------------~~---~~~~~lLil 89 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALE------AGKNAAYIDAASMPLT-----------------DA---AFEAEYLAV 89 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHT------TTCCEEEEETTTSCCC-----------------GG---GGGCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh------cCCcEEEEcHHHhhHH-----------------HH---HhCCCEEEE
Confidence 678999999999999999999998842 1223577888776543 00 125679999
Q ss_pred echhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcE-EEEEEeCCCCcCC--HHHhcccCe
Q 014376 274 DEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNV-IILTTSNITAAID--IAFVDRADI 337 (426)
Q Consensus 274 DEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~v-iVi~TtN~~~~ld--~al~~R~~~ 337 (426)
||++.+... ....++..++.+...+.. +|++|+..+..+. +.+.+|+..
T Consensus 90 DE~~~~~~~---------------~~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~SRl~~ 141 (149)
T 2kjq_A 90 DQVEKLGNE---------------EQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMAY 141 (149)
T ss_dssp ESTTCCCSH---------------HHHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHHHGGG
T ss_pred eCccccChH---------------HHHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHHHHhc
Confidence 998765321 144566666666555555 6666655565442 788898743
No 86
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.05 E-value=5.6e-10 Score=128.80 Aligned_cols=160 Identities=15% Similarity=0.158 Sum_probs=108.3
Q ss_pred ccchhhhhhhchhhHHHHHHHHHHHHHHH--hh-----------c-------CCC---Ccc----ccCCcEEEEEcCCCC
Q 014376 153 EFDGMWESLIYESGLKQRLLHYAASALMF--AE-----------K-------GVN---PFL----VSWNRIVLLHGPPGT 205 (426)
Q Consensus 153 ~~~~~~~~lv~~~~~k~~L~~~~~~~~~~--~~-----------~-------g~~---~~~----i~~~~~vLL~GPpGt 205 (426)
+...-|+++-+-+++|+.+++.+.+++.+ .. . |.. ... ++.|+.++|||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 44467999999999999999999888733 11 1 111 111 346788999999999
Q ss_pred cHHHHHHHHHHHhcccccCCCCcceEEEEeccccc------------cccccc----hHHHHHHHHHHHHHHHHhccCcE
Q 014376 206 GKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLF------------SKWFSE----SGKLVAKLFQKIQEMVEEENNLV 269 (426)
Q Consensus 206 GKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~------------~~~~~e----~~~~v~~~f~~~~~~~~~~~~~~ 269 (426)
|||+||++++.+.... +.+.+.|+..... ++|+++ +++.+..+|..++. ..++
T Consensus 1094 GKT~la~~~~~~~~~~------g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~-----~~~~ 1162 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS-----GAVD 1162 (1706)
T ss_dssp SHHHHHHHHHHHHHHT------TCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH-----TCCS
T ss_pred ChHHHHHHHHHHhhhc------CCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHh-----cCCe
Confidence 9999999999877543 2233455554433 667777 78889988888776 5899
Q ss_pred EEEEechhhHHHHhhhh--ccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCC
Q 014376 270 FVLIDEVESLAAARKAA--LSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNI 323 (426)
Q Consensus 270 illIDEid~l~~~r~~~--ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~ 323 (426)
++++|+++.|.+.+... +...+.....|+++++++.++.+....+++||+|...
T Consensus 1163 ~i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~~~n~~ 1218 (1706)
T 3cmw_A 1163 VIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 1218 (1706)
T ss_dssp EEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEEEEECE
T ss_pred EEEeCchHhcCcccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEEEeccc
Confidence 99999999999886532 2222224556789999999999888888888855433
No 87
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.91 E-value=8.2e-09 Score=123.92 Aligned_cols=146 Identities=17% Similarity=0.291 Sum_probs=89.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHH----------
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVE---------- 263 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~---------- 263 (426)
++++||+||||||||++|+.+.... ++..++.++.+...+ ...+...+........
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~--------~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~ 1332 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNS--------SLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPK 1332 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSC--------SSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEB
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcC--------CCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCC
Confidence 4679999999999999996665543 123456677655432 2223332222100000
Q ss_pred hccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcC--------CCcEEEEEEeCCCC-----cCCHH
Q 014376 264 EENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS--------SPNVIILTTSNITA-----AIDIA 330 (426)
Q Consensus 264 ~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~--------~~~viVi~TtN~~~-----~ld~a 330 (426)
.....+|+||||++.-...+ .|. ......+.++++. .++.. -.++.+|+++|++. .++++
T Consensus 1333 ~~gk~~VlFiDEinmp~~d~----yg~--q~~lelLRq~le~-gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~r 1405 (2695)
T 4akg_A 1333 SDIKNLVLFCDEINLPKLDK----YGS--QNVVLFLRQLMEK-QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSER 1405 (2695)
T ss_dssp SSSSCEEEEEETTTCSCCCS----SSC--CHHHHHHHHHHHT-SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHH
T ss_pred CCCceEEEEecccccccccc----cCc--hhHHHHHHHHHhc-CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChh
Confidence 01234799999988532211 011 1222333333321 11111 13589999999985 68999
Q ss_pred HhcccCeEEEeCCCCHHHHHHHHHHHHHHHH
Q 014376 331 FVDRADIKAYVGPPTLQARYEILRSCLQELI 361 (426)
Q Consensus 331 l~~R~~~~i~i~~p~~~~r~~Il~~~l~~l~ 361 (426)
|++|| ..++++.|+.+++..|+..++....
T Consensus 1406 llRrf-~vi~i~~P~~~~l~~I~~~il~~~l 1435 (2695)
T 4akg_A 1406 FTRHA-AILYLGYPSGKSLSQIYEIYYKAIF 1435 (2695)
T ss_dssp HHTTE-EEEECCCCTTTHHHHHHHHHHHHHT
T ss_pred hhhee-eEEEeCCCCHHHHHHHHHHHHHHHh
Confidence 99999 8899999999999999998886543
No 88
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.81 E-value=1.5e-09 Score=98.32 Aligned_cols=72 Identities=24% Similarity=0.350 Sum_probs=43.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchH-HHHHHHHHHHHHHHHhccCcEEEEE
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESG-KLVAKLFQKIQEMVEEENNLVFVLI 273 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~-~~v~~~f~~~~~~~~~~~~~~illI 273 (426)
..++|+||||||||+|++++++.+... +..++.+++..+......... ..+..++.... ...+|+|
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~lil 121 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR------NVSSLIVYVPELFRELKHSLQDQTMNEKLDYIK-------KVPVLML 121 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT------TCCEEEEEHHHHHHHHHHC---CCCHHHHHHHH-------HSSEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc------CCeEEEEEhHHHHHHHHHHhccchHHHHHHHhc-------CCCEEEE
Confidence 679999999999999999999988532 234566776554332111000 00112222222 2359999
Q ss_pred echhhH
Q 014376 274 DEVESL 279 (426)
Q Consensus 274 DEid~l 279 (426)
||++..
T Consensus 122 Dei~~~ 127 (202)
T 2w58_A 122 DDLGAE 127 (202)
T ss_dssp EEECCC
T ss_pred cCCCCC
Confidence 999654
No 89
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.72 E-value=1.7e-08 Score=98.03 Aligned_cols=119 Identities=18% Similarity=0.276 Sum_probs=64.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEE
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLI 273 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illI 273 (426)
++.++|+||||+|||+||..+|...+.+ +.++.....+..+.+.......+..+++.+.+ .. +|+|
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~~-------VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~------~~-LLVI 188 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGGK-------DKYATVRFGEPLSGYNTDFNVFVDDIARAMLQ------HR-VIVI 188 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHTT-------SCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHH------CS-EEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCCC-------EEEEEecchhhhhhhhcCHHHHHHHHHHHHhh------CC-EEEE
Confidence 6789999999999999999999873221 12244421222222222333333334443332 23 9999
Q ss_pred echhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCcCCHH
Q 014376 274 DEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIA 330 (426)
Q Consensus 274 DEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~ld~a 330 (426)
|+++.+....... +.+....+.+.+++..|.++....++.++.++|. ...|++
T Consensus 189 DsI~aL~~~~~~~---s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp-~s~dea 241 (331)
T 2vhj_A 189 DSLKNVIGAAGGN---TTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP-TSNDDK 241 (331)
T ss_dssp ECCTTTC--------------CCHHHHHHHHHHHHHHHHHTCEEEEECCC-SSCSSS
T ss_pred ecccccccccccc---cccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCC-cccchh
Confidence 9999885433221 0111112445666666666555556677777774 444444
No 90
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.67 E-value=3.9e-07 Score=88.68 Aligned_cols=161 Identities=19% Similarity=0.252 Sum_probs=91.0
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccc
Q 014376 159 ESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (426)
Q Consensus 159 ~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (426)
+.+++.+...+.|.+.+.. ++.++|+||+|+|||+|++.+++..+ .+++++..
T Consensus 12 ~~~~gR~~el~~L~~~l~~----------------~~~v~i~G~~G~GKT~Ll~~~~~~~~-----------~~~~~~~~ 64 (350)
T 2qen_A 12 EDIFDREEESRKLEESLEN----------------YPLTLLLGIRRVGKSSLLRAFLNERP-----------GILIDCRE 64 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHH----------------CSEEEEECCTTSSHHHHHHHHHHHSS-----------EEEEEHHH
T ss_pred HhcCChHHHHHHHHHHHhc----------------CCeEEEECCCcCCHHHHHHHHHHHcC-----------cEEEEeec
Confidence 4577888877777766542 24699999999999999999998763 24455432
Q ss_pred cc------------c---ccccc---------------------hHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHH
Q 014376 239 LF------------S---KWFSE---------------------SGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAA 282 (426)
Q Consensus 239 l~------------~---~~~~e---------------------~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~ 282 (426)
.. . ..... .......++..+....... .+.+|+|||++.+...
T Consensus 65 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~vlvlDe~~~~~~~ 143 (350)
T 2qen_A 65 LYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEEL-GEFIVAFDEAQYLRFY 143 (350)
T ss_dssp HHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHH-SCEEEEEETGGGGGGB
T ss_pred ccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhcc-CCEEEEEeCHHHHhcc
Confidence 21 0 00000 0012233444443333222 3899999999987530
Q ss_pred hhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCC---------cCCHHHhcccCeEEEeCCCCHHHHHHHH
Q 014376 283 RKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITA---------AIDIAFVDRADIKAYVGPPTLQARYEIL 353 (426)
Q Consensus 283 r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~---------~ld~al~~R~~~~i~i~~p~~~~r~~Il 353 (426)
. . .........+-..++.. .++.++.|+.... .....+.+|+...+.+++.+.++..+++
T Consensus 144 ~------~--~~~~~~~~~L~~~~~~~---~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l 212 (350)
T 2qen_A 144 G------S--RGGKELLALFAYAYDSL---PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFL 212 (350)
T ss_dssp T------T--TTTHHHHHHHHHHHHHC---TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHH
T ss_pred C------c--cchhhHHHHHHHHHHhc---CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHH
Confidence 0 0 01112333333333331 3455555543321 1122344566678999999999999888
Q ss_pred HHHHH
Q 014376 354 RSCLQ 358 (426)
Q Consensus 354 ~~~l~ 358 (426)
+..+.
T Consensus 213 ~~~~~ 217 (350)
T 2qen_A 213 KRGFR 217 (350)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77553
No 91
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.65 E-value=1.6e-07 Score=83.97 Aligned_cols=27 Identities=37% Similarity=0.731 Sum_probs=24.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccc
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKLSIRF 222 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (426)
.+.|.||||+|||||++.|++.+++.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 488999999999999999999987544
No 92
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.65 E-value=1.7e-06 Score=86.62 Aligned_cols=140 Identities=21% Similarity=0.246 Sum_probs=90.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHH-----------HHHHH
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKI-----------QEMVE 263 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~-----------~~~~~ 263 (426)
..++|+|++|||||++++++..... .....++.+||..+.... .-..+|... ...++
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ih~~s~------r~~~~fv~v~~~~~~~~~------~~~elfg~~~g~~tga~~~~~g~~~ 228 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARLIHKLSD------RSKEPFVALNVASIPRDI------FEAELFGYEKGAFTGAVSSKEGFFE 228 (387)
T ss_dssp SCEEEECSTTSSHHHHHHHHHHHST------TTTSCEEEEETTTSCHHH------HHHHHHCBCTTSSTTCCSCBCCHHH
T ss_pred CCeEEecCCCcCHHHHHHHHHHhcC------CCCCCeEEEecCCCCHHH------HHHHhcCCCCCCCCCcccccCCcee
Confidence 4489999999999999999988764 234667999998763211 111122110 00011
Q ss_pred hccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc--C-------CCcEEEEEEeCCC-------CcC
Q 014376 264 EENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK--S-------SPNVIILTTSNIT-------AAI 327 (426)
Q Consensus 264 ~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~--~-------~~~viVi~TtN~~-------~~l 327 (426)
. ...+.||||||+.+.. ..+..|++.++.-. + ..++.||++||.. ..+
T Consensus 229 ~-a~~gtlfldei~~l~~---------------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~f 292 (387)
T 1ny5_A 229 L-ADGGTLFLDEIGELSL---------------EAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKF 292 (387)
T ss_dssp H-TTTSEEEEESGGGCCH---------------HHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSS
T ss_pred e-CCCcEEEEcChhhCCH---------------HHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCc
Confidence 1 2457999999998865 45566777766421 1 1357788888864 335
Q ss_pred CHHHhcccC-eEEEeCCCCH--HHHHHHHHHHHHHHHH
Q 014376 328 DIAFVDRAD-IKAYVGPPTL--QARYEILRSCLQELIR 362 (426)
Q Consensus 328 d~al~~R~~-~~i~i~~p~~--~~r~~Il~~~l~~l~~ 362 (426)
.+.+..|+. ..+.+|+... ++...++++++.+...
T Consensus 293 r~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~ 330 (387)
T 1ny5_A 293 REDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSR 330 (387)
T ss_dssp CHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHH
Confidence 677777764 4567777653 6677778888877654
No 93
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.58 E-value=2.2e-07 Score=94.43 Aligned_cols=114 Identities=22% Similarity=0.228 Sum_probs=69.0
Q ss_pred EEEEEcCCCCcHHHHHHHH-HHHhcccccCCCCcceEEEEecc-----cccc------ccccchHHHHHHHHHHHHHHHH
Q 014376 196 IVLLHGPPGTGKTSLCKAL-AQKLSIRFSSRYPQCQLVEVNAH-----SLFS------KWFSESGKLVAKLFQKIQEMVE 263 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaral-A~~l~~~~~~~~~~~~~i~i~~~-----~l~~------~~~~e~~~~v~~~f~~~~~~~~ 263 (426)
++||.|+||+ ||++++++ ++.+... ++..+. .+.. .|.-+.+... .
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~pR~----------~ft~g~~ss~~gLt~s~r~~tG~~~~~G~l~-----L------ 298 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLAPRG----------VYVDLRRTELTDLTAVLKEDRGWALRAGAAV-----L------ 298 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTCSSE----------EEEEGGGCCHHHHSEEEEESSSEEEEECHHH-----H------
T ss_pred eEEEECCCCh-HHHHHHHHHHHhCCCe----------EEecCCCCCccCceEEEEcCCCcccCCCeeE-----E------
Confidence 6999999999 99999999 6655221 111110 0110 0111122110 1
Q ss_pred hccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhh-------cCCCcEEEEEEeCCCC-----------
Q 014376 264 EENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL-------KSSPNVIILTTSNITA----------- 325 (426)
Q Consensus 264 ~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l-------~~~~~viVi~TtN~~~----------- 325 (426)
....++++||++.+.. ..+..|++.|++- .-+.++.||+|+|...
T Consensus 299 --AdgGvl~lDEIn~~~~---------------~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~ 361 (506)
T 3f8t_A 299 --ADGGILAVDHLEGAPE---------------PHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARI 361 (506)
T ss_dssp --TTTSEEEEECCTTCCH---------------HHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGC
T ss_pred --cCCCeeehHhhhhCCH---------------HHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCcccc
Confidence 2457999999998865 4556677776631 1235689999999875
Q ss_pred cCCHHHhcccCeEE-EeCCCCHHH
Q 014376 326 AIDIAFVDRADIKA-YVGPPTLQA 348 (426)
Q Consensus 326 ~ld~al~~R~~~~i-~i~~p~~~~ 348 (426)
.+..++++|||..+ .++.|+.+.
T Consensus 362 ~Lp~alLDRFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 362 DLDQDFLSHFDLIAFLGVDPRPGE 385 (506)
T ss_dssp CSCHHHHTTCSEEEETTC------
T ss_pred CCChHHhhheeeEEEecCCCChhH
Confidence 67899999998765 456666544
No 94
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.58 E-value=3.3e-07 Score=110.22 Aligned_cols=130 Identities=21% Similarity=0.242 Sum_probs=91.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEE
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLI 273 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illI 273 (426)
+.++++.||+|||||++++.+|+.+|.++ +.++|++-.. ...+..+|..+.. .++.+++
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~---------v~~nc~e~ld------~~~lg~~~~g~~~------~Gaw~~~ 703 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVV---------VVFNCDDSFD------YQVLSRLLVGITQ------IGAWGCF 703 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCC---------EEEETTSSCC------HHHHHHHHHHHHH------HTCEEEE
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcE---------EEEECCCCCC------hhHhhHHHHHHHh------cCCEeee
Confidence 46799999999999999999999998766 8899987543 3445666655543 4589999
Q ss_pred echhhHHHHhhhhccCCCCChhHHHHHHHHHHhh-----------hhcCCCcEEEEEEeCCC----CcCCHHHhcccCeE
Q 014376 274 DEVESLAAARKAALSGSEPSDSIRVVNALLTQMD-----------KLKSSPNVIILTTSNIT----AAIDIAFVDRADIK 338 (426)
Q Consensus 274 DEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld-----------~l~~~~~viVi~TtN~~----~~ld~al~~R~~~~ 338 (426)
||++.+.....+.++ ..+..+.+.+. .++-++.+.|++|.|.. ..++.++++|| +.
T Consensus 704 DE~nr~~~evLs~l~--------~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~F-r~ 774 (2695)
T 4akg_A 704 DEFNRLDEKVLSAVS--------ANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSF-RE 774 (2695)
T ss_dssp ETTTSSCHHHHHHHH--------HHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTE-EE
T ss_pred hhhhhcChHHHHHHH--------HHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhhe-EE
Confidence 999987654322111 01111122221 12234567888999953 45889999999 78
Q ss_pred EEeCCCCHHHHHHHH
Q 014376 339 AYVGPPTLQARYEIL 353 (426)
Q Consensus 339 i~i~~p~~~~r~~Il 353 (426)
+.+..|+.+...+|+
T Consensus 775 v~m~~Pd~~~i~ei~ 789 (2695)
T 4akg_A 775 FSMKSPQSGTIAEMI 789 (2695)
T ss_dssp EECCCCCHHHHHHHH
T ss_pred EEeeCCCHHHHHHHH
Confidence 999999999888875
No 95
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.56 E-value=5.3e-08 Score=88.69 Aligned_cols=137 Identities=18% Similarity=0.211 Sum_probs=73.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCc-ceEEEEeccccccccc----------cchHH--HHHHHHHHHHHH
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQ-CQLVEVNAHSLFSKWF----------SESGK--LVAKLFQKIQEM 261 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~-~~~i~i~~~~l~~~~~----------~e~~~--~v~~~f~~~~~~ 261 (426)
..++++|+||||||++|..++..... +.....+ ..++..+...+...+. ..... ....+++-+ .
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~-~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~-~- 82 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEM-FKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWI-K- 82 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGG-GSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHT-T-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHh-hcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHh-h-
Confidence 47899999999999999887554410 0000001 2233444443432211 00000 001111110 0
Q ss_pred HHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCcCCHHHhcccCeEEEe
Q 014376 262 VEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYV 341 (426)
Q Consensus 262 ~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~ld~al~~R~~~~i~i 341 (426)
-.....++|+|||++.+.+.+... .+ .. .++..+..-+.. ..-||.+++.+..++.++++|++..+++
T Consensus 83 -~~~~~~~vliIDEAq~l~~~~~~~---~e---~~----rll~~l~~~r~~-~~~iil~tq~~~~l~~~lr~ri~~~~~l 150 (199)
T 2r2a_A 83 -KPENIGSIVIVDEAQDVWPARSAG---SK---IP----ENVQWLNTHRHQ-GIDIFVLTQGPKLLDQNLRTLVRKHYHI 150 (199)
T ss_dssp -SGGGTTCEEEETTGGGTSBCCCTT---CC---CC----HHHHGGGGTTTT-TCEEEEEESCGGGBCHHHHTTEEEEEEE
T ss_pred -ccccCceEEEEEChhhhccCcccc---ch---hH----HHHHHHHhcCcC-CeEEEEECCCHHHHhHHHHHHhheEEEE
Confidence 011347899999999886433111 11 11 255555543333 4444445566889999999999999988
Q ss_pred CCCCH
Q 014376 342 GPPTL 346 (426)
Q Consensus 342 ~~p~~ 346 (426)
..|..
T Consensus 151 ~~~~~ 155 (199)
T 2r2a_A 151 ASNKM 155 (199)
T ss_dssp EECSS
T ss_pred cCccc
Confidence 87543
No 96
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.54 E-value=2.7e-08 Score=96.74 Aligned_cols=111 Identities=16% Similarity=0.163 Sum_probs=57.9
Q ss_pred ccccccchhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhc-ccccCCCC
Q 014376 149 LPAKEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLS-IRFSSRYP 227 (426)
Q Consensus 149 lp~~~~~~~~~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~-~~~~~~~~ 227 (426)
+|..-....|+++++....+..+...+.. |.... .. ..+.+++|+||||||||+|++++|+.+. ..
T Consensus 114 l~~~~~~~tfd~f~~~~~~~~~~~~~~~~---~i~~~-~~---~~~~~lll~G~~GtGKT~La~aia~~~~~~~------ 180 (308)
T 2qgz_A 114 LPKSYRHIHLSDIDVNNASRMEAFSAILD---FVEQY-PS---AEQKGLYLYGDMGIGKSYLLAAMAHELSEKK------ 180 (308)
T ss_dssp SCGGGGSCCGGGSCCCSHHHHHHHHHHHH---HHHHC-SC---SSCCEEEEECSTTSSHHHHHHHHHHHHHHHS------
T ss_pred CCHHHHhCCHhhCcCCChHHHHHHHHHHH---HHHhc-cc---cCCceEEEECCCCCCHHHHHHHHHHHHHHhc------
Confidence 55443445678887754322222222211 11110 00 0146899999999999999999999885 32
Q ss_pred cceEEEEeccccccccccch-HHHHHHHHHHHHHHHHhccCcEEEEEechhhH
Q 014376 228 QCQLVEVNAHSLFSKWFSES-GKLVAKLFQKIQEMVEEENNLVFVLIDEVESL 279 (426)
Q Consensus 228 ~~~~i~i~~~~l~~~~~~e~-~~~v~~~f~~~~~~~~~~~~~~illIDEid~l 279 (426)
+..++.+++.++........ .......+... ....+|+|||++..
T Consensus 181 g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~-------~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 181 GVSTTLLHFPSFAIDVKNAISNGSVKEEIDAV-------KNVPVLILDDIGAE 226 (308)
T ss_dssp CCCEEEEEHHHHHHHHHCCCC----CCTTHHH-------HTSSEEEEETCCC-
T ss_pred CCcEEEEEHHHHHHHHHHHhccchHHHHHHHh-------cCCCEEEEcCCCCC
Confidence 23446666655443221110 00111111111 13469999999654
No 97
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.53 E-value=5.4e-06 Score=82.44 Aligned_cols=138 Identities=19% Similarity=0.288 Sum_probs=88.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHH-----------HHHHHh
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKI-----------QEMVEE 264 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~-----------~~~~~~ 264 (426)
.++++|++||||+++++++....+.. ..++.+||..+-... ....+|... ...++.
T Consensus 154 ~vli~GesGtGKe~lAr~ih~~s~r~-------~~fv~vnc~~~~~~~------~~~~lfg~~~g~~tga~~~~~g~~~~ 220 (368)
T 3dzd_A 154 PVLITGESGTGKEIVARLIHRYSGRK-------GAFVDLNCASIPQEL------AESELFGHEKGAFTGALTRKKGKLEL 220 (368)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHCCC-------SCEEEEESSSSCTTT------HHHHHHEECSCSSSSCCCCEECHHHH
T ss_pred hheEEeCCCchHHHHHHHHHHhcccc-------CCcEEEEcccCChHH------HHHHhcCccccccCCcccccCChHhh
Confidence 49999999999999999998876432 237999998763221 111111100 000111
Q ss_pred ccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhc--C-------CCcEEEEEEeCCC-------CcCC
Q 014376 265 ENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLK--S-------SPNVIILTTSNIT-------AAID 328 (426)
Q Consensus 265 ~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~--~-------~~~viVi~TtN~~-------~~ld 328 (426)
...+.||||||+.+.. ..+..|+..++.-. + .-++.+|++||.. ..+.
T Consensus 221 -a~~gtlfldei~~l~~---------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr 284 (368)
T 3dzd_A 221 -ADQGTLFLDEVGELDQ---------------RVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFR 284 (368)
T ss_dssp -TTTSEEEEETGGGSCH---------------HHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSC
T ss_pred -cCCCeEEecChhhCCH---------------HHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCcc
Confidence 2446899999999865 45566777776421 1 1246677887754 2345
Q ss_pred HHHhcccCe-EEEeCCCCH--HHHHHHHHHHHHHHHH
Q 014376 329 IAFVDRADI-KAYVGPPTL--QARYEILRSCLQELIR 362 (426)
Q Consensus 329 ~al~~R~~~-~i~i~~p~~--~~r~~Il~~~l~~l~~ 362 (426)
+.+..|+.. .+.+|+... ++...++++++.+...
T Consensus 285 ~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~ 321 (368)
T 3dzd_A 285 EDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAK 321 (368)
T ss_dssp HHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHH
Confidence 677777754 578888776 6778888888887754
No 98
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.53 E-value=5e-07 Score=88.00 Aligned_cols=43 Identities=23% Similarity=0.248 Sum_probs=33.0
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 159 ESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 159 ~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+++.++..+.|.+ +.. +.++|+||+|+|||+|++.+++.++
T Consensus 13 ~~~~gR~~el~~L~~-l~~-----------------~~v~i~G~~G~GKT~L~~~~~~~~~ 55 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA-----------------PITLVLGLRRTGKSSIIKIGINELN 55 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS-----------------SEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHhcChHHHHHHHHH-hcC-----------------CcEEEECCCCCCHHHHHHHHHHhcC
Confidence 456777776666655 321 3699999999999999999999874
No 99
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.52 E-value=1.1e-07 Score=94.79 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=33.5
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (426)
+.+..|..+.|.||+|||||||+|+|++.+. |..+.+.+++.
T Consensus 24 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-------p~~G~I~i~G~ 65 (381)
T 3rlf_A 24 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLET-------ITSGDLFIGEK 65 (381)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSC-------CSEEEEEETTE
T ss_pred EEECCCCEEEEEcCCCchHHHHHHHHHcCCC-------CCCeEEEECCE
Confidence 5677799999999999999999999999884 34445555543
No 100
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.49 E-value=3e-07 Score=83.65 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
.++++|+||||||||++|.++|+.+.
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56799999999999999999999984
No 101
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.48 E-value=7.4e-07 Score=81.63 Aligned_cols=132 Identities=14% Similarity=0.197 Sum_probs=69.7
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccc-c-------cc---------------ch
Q 014376 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSK-W-------FS---------------ES 247 (426)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~-~-------~~---------------e~ 247 (426)
+..|..+.|.||||+|||||++.+++.+..+........+.++++....+.. . ++ ..
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFN 101 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEECCS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEecCC
Confidence 3348999999999999999999999976443222222445677766542110 0 00 00
Q ss_pred HHHHHHHHHHHHHHHH----hccCcEEEEEechhhHHHHhhhhccCCCC-ChhHHHHHHHHHHhhhhc-CCCcEEEEEEe
Q 014376 248 GKLVAKLFQKIQEMVE----EENNLVFVLIDEVESLAAARKAALSGSEP-SDSIRVVNALLTQMDKLK-SSPNVIILTTS 321 (426)
Q Consensus 248 ~~~v~~~f~~~~~~~~----~~~~~~illIDEid~l~~~r~~~ls~~e~-~~~~~~~~~ll~~ld~l~-~~~~viVi~Tt 321 (426)
..........+...+. ....|.++++||........ ++++.+ ....+.+..++..+.++. ..+..+|++||
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~---~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH 178 (231)
T 4a74_A 102 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSE---YIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQ 178 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHH---SCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccc---cCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEee
Confidence 1111111222332222 13578899999987765432 222111 011122334555554443 34678888888
Q ss_pred CCCC
Q 014376 322 NITA 325 (426)
Q Consensus 322 N~~~ 325 (426)
...+
T Consensus 179 ~~~~ 182 (231)
T 4a74_A 179 VQAN 182 (231)
T ss_dssp CC--
T ss_pred cccC
Confidence 6554
No 102
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.45 E-value=5.8e-07 Score=85.90 Aligned_cols=42 Identities=17% Similarity=0.335 Sum_probs=33.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (426)
+.+..|..+.|.||+|+|||||+++|++.+. |..+.+.+++.
T Consensus 29 l~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~-------p~~G~I~~~G~ 70 (275)
T 3gfo_A 29 MNIKRGEVTAILGGNGVGKSTLFQNFNGILK-------PSSGRILFDNK 70 (275)
T ss_dssp EEEETTSEEEEECCTTSSHHHHHHHHTTSSC-------CSEEEEEETTE
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-------CCCeEEEECCE
Confidence 5677799999999999999999999999873 33444555543
No 103
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.45 E-value=2e-08 Score=95.65 Aligned_cols=31 Identities=32% Similarity=0.561 Sum_probs=28.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 32 l~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 32 LHIASGEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp EEEETTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 5677799999999999999999999999873
No 104
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.41 E-value=9.4e-07 Score=81.99 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=23.4
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHH
Q 014376 191 VSWNRIVLLHGPPGTGKTSLCKALAQ 216 (426)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~ 216 (426)
+..|..+.|.||||+|||||++.++.
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 44589999999999999999999994
No 105
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.40 E-value=1.8e-06 Score=81.56 Aligned_cols=31 Identities=29% Similarity=0.470 Sum_probs=27.8
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 36 l~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 36 FEIEEGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5567799999999999999999999999873
No 106
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.37 E-value=4e-07 Score=90.06 Aligned_cols=31 Identities=29% Similarity=0.418 Sum_probs=28.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|||||||+|+|++...
T Consensus 25 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 25 LSLDPGEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 4677799999999999999999999999874
No 107
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.36 E-value=1.8e-06 Score=80.45 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=28.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 26 l~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 26 LNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4677799999999999999999999999874
No 108
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.36 E-value=4e-07 Score=90.19 Aligned_cols=31 Identities=39% Similarity=0.441 Sum_probs=27.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|||||||+|+||+.+.
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 24 FEVKDGEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEcCCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 4567799999999999999999999999873
No 109
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.36 E-value=3.6e-07 Score=90.40 Aligned_cols=42 Identities=29% Similarity=0.401 Sum_probs=33.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (426)
+.+..|..+.|.||+|||||||+|+||+.+. |..+.+.+++.
T Consensus 36 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-------p~~G~I~i~g~ 77 (355)
T 1z47_A 36 FQIREGEMVGLLGPSGSGKTTILRLIAGLER-------PTKGDVWIGGK 77 (355)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTSSC-------CSEEEEEETTE
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHhCCCC-------CCccEEEECCE
Confidence 4567789999999999999999999999873 34444555543
No 110
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.34 E-value=1.2e-06 Score=106.26 Aligned_cols=143 Identities=21% Similarity=0.310 Sum_probs=86.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHH---------HHh
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEM---------VEE 264 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~---------~~~ 264 (426)
++.+||+||||||||++++.....+ ++..++.++.+.-.+ ...+...++...+. ..-
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l--------~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p 1369 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAF--------PDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRP 1369 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGC--------TTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhC--------CCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCC
Confidence 3559999999999998876554433 123456777665332 22333333211000 000
Q ss_pred --ccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhh----------hcCCCcEEEEEEeCCCC-----cC
Q 014376 265 --ENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDK----------LKSSPNVIILTTSNITA-----AI 327 (426)
Q Consensus 265 --~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~----------l~~~~~viVi~TtN~~~-----~l 327 (426)
.+...|+||||++.-.. +...+......|...+|. .+.-.++.+|+|.|.+. .+
T Consensus 1370 ~~~Gk~~VlFiDDiNmp~~---------D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l 1440 (3245)
T 3vkg_A 1370 TQLGKWLVVFCDEINLPST---------DKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQL 1440 (3245)
T ss_dssp SSTTCEEEEEETTTTCCCC---------CTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCC
T ss_pred CcCCceEEEEecccCCCCc---------cccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccC
Confidence 12347999999874221 111122233333333331 11225688999999874 48
Q ss_pred CHHHhcccCeEEEeCCCCHHHHHHHHHHHHHHH
Q 014376 328 DIAFVDRADIKAYVGPPTLQARYEILRSCLQEL 360 (426)
Q Consensus 328 d~al~~R~~~~i~i~~p~~~~r~~Il~~~l~~l 360 (426)
+++|++|| ..++++.|+.+....|+..++...
T Consensus 1441 ~~Rf~r~F-~vi~i~~ps~esL~~If~til~~~ 1472 (3245)
T 3vkg_A 1441 THRFLRHA-PILLVDFPSTSSLTQIYGTFNRAL 1472 (3245)
T ss_dssp CHHHHTTC-CEEECCCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHhhc-eEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99999999 569999999999999988776654
No 111
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.34 E-value=2e-06 Score=79.62 Aligned_cols=31 Identities=26% Similarity=0.317 Sum_probs=27.8
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 25 l~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 25 LSVKKGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEETTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4567799999999999999999999999873
No 112
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.33 E-value=3.6e-07 Score=88.60 Aligned_cols=42 Identities=21% Similarity=0.399 Sum_probs=33.4
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (426)
+.+..|..+.|.||+|+|||||++.|++.+. |..+.+.+++.
T Consensus 75 l~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~-------p~~G~I~i~G~ 116 (306)
T 3nh6_A 75 FTVMPGQTLALVGPSGAGKSTILRLLFRFYD-------ISSGCIRIDGQ 116 (306)
T ss_dssp EEECTTCEEEEESSSCHHHHHHHHHHTTSSC-------CSEEEEEETTE
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHHcCCC-------CCCcEEEECCE
Confidence 5677799999999999999999999999873 34445555554
No 113
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.33 E-value=1.6e-06 Score=81.93 Aligned_cols=31 Identities=29% Similarity=0.524 Sum_probs=28.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 28 l~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 28 ISVNKGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp CEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5677899999999999999999999999874
No 114
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.31 E-value=3e-06 Score=80.42 Aligned_cols=31 Identities=23% Similarity=0.457 Sum_probs=27.8
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 45 l~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 45 VHIREGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 4567799999999999999999999999873
No 115
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.31 E-value=7.5e-07 Score=88.64 Aligned_cols=31 Identities=26% Similarity=0.425 Sum_probs=27.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|||||||+|+||+.+.
T Consensus 32 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 32 LTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 4567789999999999999999999999873
No 116
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.31 E-value=1.5e-06 Score=86.19 Aligned_cols=43 Identities=23% Similarity=0.297 Sum_probs=34.4
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (426)
+.+..|..+.|.||+|+|||||+|+|++.+. |..+.+.+++.+
T Consensus 49 l~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~-------p~~G~I~i~G~~ 91 (366)
T 3tui_C 49 LHVPAGQIYGVIGASGAGKSTLIRCVNLLER-------PTEGSVLVDGQE 91 (366)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSC-------CSEEEEEETTEE
T ss_pred EEEcCCCEEEEEcCCCchHHHHHHHHhcCCC-------CCceEEEECCEE
Confidence 5677799999999999999999999999873 445556665543
No 117
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.30 E-value=6.5e-07 Score=88.76 Aligned_cols=42 Identities=21% Similarity=0.389 Sum_probs=33.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (426)
+.+..|..+.|.||+|||||||+|+||+.+. |..+.+.+++.
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-------p~~G~I~i~g~ 65 (362)
T 2it1_A 24 LKIKDGEFMALLGPSGSGKSTLLYTIAGIYK-------PTSGKIYFDEK 65 (362)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSC-------CSEEEEEETTE
T ss_pred EEECCCCEEEEECCCCchHHHHHHHHhcCCC-------CCceEEEECCE
Confidence 4567799999999999999999999999873 34444555543
No 118
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.30 E-value=1.6e-06 Score=101.55 Aligned_cols=120 Identities=13% Similarity=0.185 Sum_probs=75.4
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccccccc----------------ccchHHHHHHH
Q 014376 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKW----------------FSESGKLVAKL 254 (426)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~----------------~~e~~~~v~~~ 254 (426)
+..+++++|+||||||||+||.+++...... +.....++....+... ....+.....+
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~------G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTT------TCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHc------CCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHH
Confidence 3457899999999999999999998877432 2234555554332110 11223444444
Q ss_pred HHHHHHHHHhccCcEEEEEechhhHHHHhhh--hccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEe
Q 014376 255 FQKIQEMVEEENNLVFVLIDEVESLAAARKA--ALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTS 321 (426)
Q Consensus 255 f~~~~~~~~~~~~~~illIDEid~l~~~r~~--~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~Tt 321 (426)
++.++. ..+.+|+||+++.+.+.... .+.........+.+.++|..|..+....+++||+|.
T Consensus 1498 ~~lvr~-----~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A 1498 DALARS-----GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp HHHHHH-----TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred HHHHhc-----CCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 444443 57899999999877764321 111111112356778888888888777777777764
No 119
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.29 E-value=8.7e-07 Score=78.26 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=22.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHH
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKA 213 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLara 213 (426)
+.+..|..+.|.||||+|||||+++
T Consensus 4 l~i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 4 LTIPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEESSEEEEEECCTTSCHHHHHHH
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHH
Confidence 4566789999999999999999993
No 120
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.28 E-value=8.9e-07 Score=88.17 Aligned_cols=31 Identities=29% Similarity=0.421 Sum_probs=28.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|||||||+|+||+.+.
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 24 LEVKDGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEcCCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 4567799999999999999999999999874
No 121
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.28 E-value=9.5e-07 Score=87.15 Aligned_cols=43 Identities=21% Similarity=0.347 Sum_probs=34.2
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (426)
+.+..|..+.|.||+|||||||+|+||+... |..+.+.+++.+
T Consensus 21 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-------p~~G~I~~~g~~ 63 (348)
T 3d31_A 21 LKVESGEYFVILGPTGAGKTLFLELIAGFHV-------PDSGRILLDGKD 63 (348)
T ss_dssp EEECTTCEEEEECCCTHHHHHHHHHHHTSSC-------CSEEEEEETTEE
T ss_pred EEEcCCCEEEEECCCCccHHHHHHHHHcCCC-------CCCcEEEECCEE
Confidence 4567799999999999999999999999873 445556665543
No 122
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.25 E-value=6.5e-06 Score=78.37 Aligned_cols=31 Identities=26% Similarity=0.486 Sum_probs=27.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 40 l~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 40 FTLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4567799999999999999999999999873
No 123
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.25 E-value=2.5e-06 Score=78.41 Aligned_cols=31 Identities=35% Similarity=0.620 Sum_probs=27.6
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 30 l~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 30 MTIEKGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp EEEETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4567789999999999999999999999873
No 124
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.24 E-value=4.7e-06 Score=78.34 Aligned_cols=29 Identities=38% Similarity=0.588 Sum_probs=26.7
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHH
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQK 217 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~ 217 (426)
+.+..|..+.|.||+|+|||||+++|++.
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 24 LVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 55777999999999999999999999997
No 125
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.23 E-value=2.8e-06 Score=79.40 Aligned_cols=31 Identities=35% Similarity=0.456 Sum_probs=27.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 27 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 27 LKVPRGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5567799999999999999999999999874
No 126
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.23 E-value=3.3e-06 Score=79.44 Aligned_cols=31 Identities=35% Similarity=0.397 Sum_probs=28.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 21 l~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 21 GEVRAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4567799999999999999999999999874
No 127
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.23 E-value=1.5e-06 Score=83.13 Aligned_cols=31 Identities=26% Similarity=0.309 Sum_probs=27.8
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 42 l~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 42 WQIAKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4567789999999999999999999999873
No 128
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.21 E-value=1.1e-05 Score=74.42 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=32.3
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccc
Q 014376 192 SWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (426)
Q Consensus 192 ~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (426)
..|..++|+||||+|||||++.++.....+........+.++++...
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 34889999999999999999999996421100000135667777655
No 129
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.19 E-value=7.5e-06 Score=99.42 Aligned_cols=134 Identities=18% Similarity=0.150 Sum_probs=88.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEE
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLI 273 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illI 273 (426)
+.+..+.||+|||||.+++.+|+.+|... +.+||++-+. .+.+.++|.-+.. ..+..++
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~---------~vfnC~~~~d------~~~~g~i~~G~~~------~GaW~cf 662 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFV---------LVFCCDEGFD------LQAMSRIFVGLCQ------CGAWGCF 662 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCE---------EEEECSSCCC------HHHHHHHHHHHHH------HTCEEEE
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeE---------EEEeCCCCCC------HHHHHHHHhhHhh------cCcEEEe
Confidence 45678999999999999999999998665 8889877432 2345556554433 4577899
Q ss_pred echhhHHHHhhhhccCCCCChhHHHHHHHHHH-----h---hhhcCCCcEEEEEEeCCC----CcCCHHHhcccCeEEEe
Q 014376 274 DEVESLAAARKAALSGSEPSDSIRVVNALLTQ-----M---DKLKSSPNVIILTTSNIT----AAIDIAFVDRADIKAYV 341 (426)
Q Consensus 274 DEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~-----l---d~l~~~~~viVi~TtN~~----~~ld~al~~R~~~~i~i 341 (426)
||++.+....-+.++.. -..+..++... + ..++-++.+.|++|.|.. ..++.+++.|| +.+.+
T Consensus 663 DEfNrl~~~vLSvv~~q----i~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lF-r~v~m 737 (3245)
T 3vkg_A 663 DEFNRLEERILSAVSQQ----IQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLF-RSMAM 737 (3245)
T ss_dssp ETTTSSCHHHHHHHHHH----HHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTE-EEEEC
T ss_pred hhhhcCCHHHHHHHHHH----HHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhc-EEEEE
Confidence 99988755332111000 00011111110 0 012334568889999953 45899999999 77999
Q ss_pred CCCCHHHHHHHH
Q 014376 342 GPPTLQARYEIL 353 (426)
Q Consensus 342 ~~p~~~~r~~Il 353 (426)
..|+.+...+|+
T Consensus 738 ~~Pd~~~i~ei~ 749 (3245)
T 3vkg_A 738 IKPDREMIAQVM 749 (3245)
T ss_dssp CSCCHHHHHHHH
T ss_pred eCCCHHHHHHHH
Confidence 999999988885
No 130
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.19 E-value=5e-06 Score=78.35 Aligned_cols=31 Identities=26% Similarity=0.330 Sum_probs=28.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 26 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 26 FDLNKGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEETTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5567799999999999999999999999874
No 131
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.18 E-value=3.3e-06 Score=79.01 Aligned_cols=40 Identities=28% Similarity=0.469 Sum_probs=31.5
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEec
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (426)
+.+.. ..+.|.||+|+|||||+++|++.+. |..+.+.+++
T Consensus 20 l~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-------p~~G~i~~~g 59 (240)
T 2onk_A 20 FEMGR-DYCVLLGPTGAGKSVFLELIAGIVK-------PDRGEVRLNG 59 (240)
T ss_dssp EEECS-SEEEEECCTTSSHHHHHHHHHTSSC-------CSEEEEEETT
T ss_pred EEECC-EEEEEECCCCCCHHHHHHHHhCCCC-------CCceEEEECC
Confidence 45677 8899999999999999999999873 3444455554
No 132
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.17 E-value=3.6e-06 Score=76.41 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHH
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQ 216 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~ 216 (426)
.|..++|+||||+|||||++.++.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999999998
No 133
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.17 E-value=1.6e-06 Score=85.70 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=28.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|||||||+|+||+.+.
T Consensus 26 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 26 INIENGERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp EEECTTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 5677799999999999999999999999874
No 134
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.14 E-value=1.5e-05 Score=78.66 Aligned_cols=132 Identities=14% Similarity=0.192 Sum_probs=71.0
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccccc-c----------c----------ccc--
Q 014376 190 LVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFS-K----------W----------FSE-- 246 (426)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~-~----------~----------~~e-- 246 (426)
.+..|+.+.|+||||+|||||++.++..+..+......++..++++....+. . + +..
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~ 206 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAF 206 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecC
Confidence 3556899999999999999999999998732210000123447777654320 0 0 000
Q ss_pred hHHHHHHHHHHHHHHHHhc----cCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcC-CCcEEEEEEe
Q 014376 247 SGKLVAKLFQKIQEMVEEE----NNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKS-SPNVIILTTS 321 (426)
Q Consensus 247 ~~~~v~~~f~~~~~~~~~~----~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~-~~~viVi~Tt 321 (426)
......+++..+..++... ..+.+|+|||+-.+...... ..++-......+..++..|.++.. .+.++|+++|
T Consensus 207 ~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~--~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h 284 (349)
T 1pzn_A 207 NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYI--GRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQ 284 (349)
T ss_dssp SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCC--STTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhc--ccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcc
Confidence 0112233344444444332 57899999999877643210 000001111234555555555543 3556666666
Q ss_pred CC
Q 014376 322 NI 323 (426)
Q Consensus 322 N~ 323 (426)
..
T Consensus 285 ~~ 286 (349)
T 1pzn_A 285 VQ 286 (349)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 135
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.13 E-value=4.6e-06 Score=76.18 Aligned_cols=28 Identities=32% Similarity=0.379 Sum_probs=24.7
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 192 SWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 192 ~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
..|..++|+||||+|||||++.++..+.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3488999999999999999999997763
No 136
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.12 E-value=8.6e-06 Score=80.49 Aligned_cols=120 Identities=15% Similarity=0.244 Sum_probs=67.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccccccc------------ccchHHHHHHHHHHHHHH
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKW------------FSESGKLVAKLFQKIQEM 261 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~------------~~e~~~~v~~~f~~~~~~ 261 (426)
|+.++|+||||+|||||+..++..+... +..+++++........ .-.....+..+...+..+
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~------gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l 134 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKM------GGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDEL 134 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHT------TCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc------CCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHH
Confidence 8899999999999999999999887421 2345666665432110 000011122333333333
Q ss_pred HHhccCcEEEEEechhhHHHHhhhhccC--CCCC--hhHHHHHHHHHHhhhhcCCCcEEEEEEeC
Q 014376 262 VEEENNLVFVLIDEVESLAAARKAALSG--SEPS--DSIRVVNALLTQMDKLKSSPNVIILTTSN 322 (426)
Q Consensus 262 ~~~~~~~~illIDEid~l~~~r~~~ls~--~e~~--~~~~~~~~ll~~ld~l~~~~~viVi~TtN 322 (426)
+. ...+.+++||.+..+..... +.+ ++.. ...+.+..++..|..+....++.||.+..
T Consensus 135 ~~-~~~~dlvVIDSi~~l~~~~e--l~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inq 196 (356)
T 3hr8_A 135 VR-SGVVDLIVVDSVAALVPRAE--IEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQ 196 (356)
T ss_dssp HH-TSCCSEEEEECTTTCCCHHH--HTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEE
T ss_pred hh-hcCCCeEEehHhhhhcChhh--hcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEee
Confidence 32 24678999999887753111 112 1111 22456667777777765555555555433
No 137
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.12 E-value=6.3e-06 Score=76.89 Aligned_cols=31 Identities=32% Similarity=0.485 Sum_probs=28.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 26 FSIPEGALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5677799999999999999999999999874
No 138
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.10 E-value=2.3e-05 Score=74.06 Aligned_cols=31 Identities=26% Similarity=0.451 Sum_probs=27.6
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 41 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 41 FFIPSGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 4567799999999999999999999999763
No 139
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.09 E-value=2e-05 Score=76.79 Aligned_cols=128 Identities=18% Similarity=0.292 Sum_probs=70.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccc-----c---cc---------------chHH
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSK-----W---FS---------------ESGK 249 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~-----~---~~---------------e~~~ 249 (426)
.|..++|+||||+|||+||..++.....+......+.+.++++....+.. + ++ ....
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 48899999999999999999999875322100011346677776553110 0 00 0111
Q ss_pred HHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccC-CCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCC
Q 014376 250 LVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSG-SEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNI 323 (426)
Q Consensus 250 ~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~-~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~ 323 (426)
....++..+..++.....+.+|+||.+..+..... .+ ++.......+..++..|..+....++.|++++..
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~---~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEY---PGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHS---CTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhh---cCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 22234444554444325688999999998875321 11 1111112345666666666654445555555443
No 140
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.09 E-value=1.7e-05 Score=77.94 Aligned_cols=129 Identities=21% Similarity=0.336 Sum_probs=70.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccc-----c---cc---------------chHH
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSK-----W---FS---------------ESGK 249 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~-----~---~~---------------e~~~ 249 (426)
.|..++|+||||+|||+||..+|.....+......+.+.++++....+.. + ++ ....
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~e 200 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSE 200 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCHH
Confidence 48899999999999999999999875322100002346677776553210 0 00 0011
Q ss_pred HHHHHHHHHHHHHHhc-cCcEEEEEechhhHHHHhhhhccC-CCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCC
Q 014376 250 LVAKLFQKIQEMVEEE-NNLVFVLIDEVESLAAARKAALSG-SEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNIT 324 (426)
Q Consensus 250 ~v~~~f~~~~~~~~~~-~~~~illIDEid~l~~~r~~~ls~-~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~ 324 (426)
....+...+..++... ..+.+|+||.+..+.... ..+ ++.......+..++..|..+....++.||+++...
T Consensus 201 ~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~---~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 201 HQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVD---FSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp HHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHH---CCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred HHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHH---hcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 1223333444444432 567899999999887532 111 11011122456666666666555555555554443
No 141
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.02 E-value=1.9e-05 Score=79.29 Aligned_cols=128 Identities=20% Similarity=0.311 Sum_probs=67.9
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccccccc--------ccc---------------h
Q 014376 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKW--------FSE---------------S 247 (426)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~--------~~e---------------~ 247 (426)
+..|..+.|+||||+|||||++.++-....+........+.++++....+... ++- .
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~ 254 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYN 254 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCC
Confidence 45588999999999999999997764443221100123456777775532110 000 0
Q ss_pred HHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccC-CCCChhHHHHHHHHHHhhhhcCC-CcEEEEEEeC
Q 014376 248 GKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSG-SEPSDSIRVVNALLTQMDKLKSS-PNVIILTTSN 322 (426)
Q Consensus 248 ~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~-~e~~~~~~~~~~ll~~ld~l~~~-~~viVi~TtN 322 (426)
..........+...+.. ..+.+|+||++..+.... +++ ++.....+.+..++..|.++... +..+|+++|-
T Consensus 255 ~~~~~~~l~~~~~~l~~-~~~~llVIDs~t~~~~~~---~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 255 ADHQLRLLDAAAQMMSE-SRFSLIVVDSVMALYRTD---FSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp HHHHHHHHHHHHHHHHH-SCEEEEEEETGGGGCC---------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred hHHHHHHHHHHHHHHHh-cCCceEEecchhhhCchh---hcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 11112222333333322 468999999987765321 111 11112234446666666666443 5667777665
No 142
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.02 E-value=6.7e-06 Score=85.59 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=24.2
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHH--HHHHh
Q 014376 191 VSWNRIVLLHGPPGTGKTSLCKA--LAQKL 218 (426)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLara--lA~~l 218 (426)
+..|+.++|.||||||||||++. +++.+
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 44589999999999999999999 56665
No 143
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.01 E-value=1.4e-05 Score=79.89 Aligned_cols=31 Identities=35% Similarity=0.459 Sum_probs=27.7
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|||||||+++|++.+.
T Consensus 42 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 42 FSISPGQRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred EEEcCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 4567799999999999999999999999763
No 144
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.99 E-value=6.1e-06 Score=87.11 Aligned_cols=44 Identities=27% Similarity=0.463 Sum_probs=35.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (426)
+.++.|+.+.|.||+|+|||||++.+++.+. |..+.+.+++.++
T Consensus 364 l~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~-------~~~G~i~i~g~~i 407 (587)
T 3qf4_A 364 FSVKPGSLVAVLGETGSGKSTLMNLIPRLID-------PERGRVEVDELDV 407 (587)
T ss_dssp EEECTTCEEEEECSSSSSHHHHHHTTTTSSC-------CSEEEEEESSSBG
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCcc-------CCCcEEEECCEEc
Confidence 4577799999999999999999999999873 4455566665443
No 145
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.98 E-value=1.1e-05 Score=79.55 Aligned_cols=81 Identities=16% Similarity=0.225 Sum_probs=48.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccccccc----ccc--------hHHHHHHHHHHHHH
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKW----FSE--------SGKLVAKLFQKIQE 260 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~----~~e--------~~~~v~~~f~~~~~ 260 (426)
.|+.++|+||||+||||||..++..+... +..+++++........ ++. ......+++..+..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~------g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA------GGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT------TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC------CCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 38899999999999999999999876421 2344555554322110 000 00012233333333
Q ss_pred HHHhccCcEEEEEechhhHH
Q 014376 261 MVEEENNLVFVLIDEVESLA 280 (426)
Q Consensus 261 ~~~~~~~~~illIDEid~l~ 280 (426)
++. ...+.+|+||++..+.
T Consensus 134 l~~-~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 134 LVR-SGALDIIVIDSVAALV 152 (349)
T ss_dssp HHT-TTCCSEEEEECGGGCC
T ss_pred HHh-cCCCCEEEEcChHhhc
Confidence 322 2468899999998876
No 146
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.97 E-value=7.1e-06 Score=86.51 Aligned_cols=31 Identities=23% Similarity=0.470 Sum_probs=28.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.++.|+.+.|.||+|+|||||++.+++.+.
T Consensus 364 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 364 FSIPQGKTVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5677799999999999999999999999874
No 147
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.97 E-value=5e-06 Score=87.96 Aligned_cols=43 Identities=26% Similarity=0.365 Sum_probs=34.2
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (426)
+.++.|+.+.|.||+|+|||||++.+++.+. |..+.+.+++.+
T Consensus 376 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~-------p~~G~i~~~g~~ 418 (598)
T 3qf4_B 376 FHIKPGQKVALVGPTGSGKTTIVNLLMRFYD-------VDRGQILVDGID 418 (598)
T ss_dssp EECCTTCEEEEECCTTSSTTHHHHHHTTSSC-------CSEEEEEETTEE
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCcC-------CCCeEEEECCEE
Confidence 5677899999999999999999999999873 344556665543
No 148
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.95 E-value=7.9e-05 Score=70.45 Aligned_cols=26 Identities=35% Similarity=0.654 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
..+++|+||||||||+++++||+.+.
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 45799999999999999999999753
No 149
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.93 E-value=4.5e-05 Score=72.44 Aligned_cols=29 Identities=28% Similarity=0.405 Sum_probs=25.4
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+..|+.++|+||||+|||||++.++..+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 34588999999999999999999998663
No 150
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.92 E-value=3.1e-05 Score=73.19 Aligned_cols=29 Identities=21% Similarity=0.468 Sum_probs=25.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 192 SWNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 192 ~~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
..|..++|.||+|+||||+++++++.+..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 34788999999999999999999998853
No 151
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.90 E-value=8.7e-06 Score=85.81 Aligned_cols=42 Identities=17% Similarity=0.325 Sum_probs=33.2
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (426)
+.++.|+.+.|.||+|+|||||++.+++.+. |..+.+.+++.
T Consensus 364 ~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-------p~~G~i~~~g~ 405 (582)
T 3b60_A 364 LKIPAGKTVALVGRSGSGKSTIASLITRFYD-------IDEGHILMDGH 405 (582)
T ss_dssp EEECTTCEEEEEECTTSSHHHHHHHHTTTTC-------CSEEEEEETTE
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhccC-------CCCCeEEECCE
Confidence 4567799999999999999999999999873 34444555543
No 152
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.90 E-value=5.6e-06 Score=87.20 Aligned_cols=43 Identities=16% Similarity=0.296 Sum_probs=34.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (426)
+.++.|..+.|.||+|+|||||++.+++.+. |..+.+.+++.+
T Consensus 362 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~-------p~~G~i~~~g~~ 404 (578)
T 4a82_A 362 LSIEKGETVAFVGMSGGGKSTLINLIPRFYD-------VTSGQILIDGHN 404 (578)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHTTTTTSSC-------CSEEEEEETTEE
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHhcCCC-------CCCcEEEECCEE
Confidence 4577799999999999999999999999873 444556666543
No 153
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.87 E-value=1e-05 Score=79.28 Aligned_cols=38 Identities=18% Similarity=0.441 Sum_probs=30.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (426)
|..++|.||+|+|||||+++|++.+. ++.+.+.++...
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~-------~~~g~i~i~~~~ 208 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIP-------KEERIISIEDTE 208 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSC-------TTSCEEEEESSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc-------CCCcEEEECCee
Confidence 56799999999999999999999873 345567776543
No 154
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.84 E-value=3e-05 Score=74.21 Aligned_cols=30 Identities=13% Similarity=0.329 Sum_probs=26.4
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
+..|..++|.||||+|||||++.++..+..
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 345899999999999999999999998853
No 155
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.84 E-value=3.7e-05 Score=72.79 Aligned_cols=29 Identities=38% Similarity=0.654 Sum_probs=26.8
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (426)
+.+. |..+.|.||+|+|||||+++|++.+
T Consensus 26 l~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 26 LEVN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678 8999999999999999999999876
No 156
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.84 E-value=9.2e-05 Score=71.82 Aligned_cols=127 Identities=18% Similarity=0.268 Sum_probs=69.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccc------cCCCCc----ceEEEEeccccccc-----c---cc---------
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKLSIRF------SSRYPQ----CQLVEVNAHSLFSK-----W---FS--------- 245 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~~~~------~~~~~~----~~~i~i~~~~l~~~-----~---~~--------- 245 (426)
.|..++|+||||+|||+||..++.....+. .....+ .++++++...-+.. + ++
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDN 176 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhcC
Confidence 488999999999999999999998642210 000011 46677776553210 0 00
Q ss_pred ------chHHHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccC-CCCChhHHHHHHHHHHhhhhcCCCcEEEE
Q 014376 246 ------ESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSG-SEPSDSIRVVNALLTQMDKLKSSPNVIIL 318 (426)
Q Consensus 246 ------e~~~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~-~e~~~~~~~~~~ll~~ld~l~~~~~viVi 318 (426)
........++..+...+.....+.+|+||.+..+.... ..+ ++..+....+..++..|..+....++.|+
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~---~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi 253 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNE---YTGRGKLAERQQKLGRHMATLNKLADLFNCVVL 253 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHH---CCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHH---hcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 01111222333444444332567899999999887532 111 11111223456666666666555555555
Q ss_pred EEeC
Q 014376 319 TTSN 322 (426)
Q Consensus 319 ~TtN 322 (426)
+++.
T Consensus 254 ~~nq 257 (322)
T 2i1q_A 254 VTNQ 257 (322)
T ss_dssp EEEC
T ss_pred EECc
Confidence 5543
No 157
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.82 E-value=2.8e-05 Score=82.23 Aligned_cols=32 Identities=28% Similarity=0.298 Sum_probs=27.8
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhcccc
Q 014376 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (426)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (426)
+..|..+.|.||+|+|||||++.|++.+....
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~ 131 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNL 131 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSSCCCT
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCCCCCC
Confidence 45689999999999999999999999885443
No 158
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.81 E-value=8.3e-05 Score=77.57 Aligned_cols=31 Identities=39% Similarity=0.490 Sum_probs=27.7
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 190 LVSWNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
.+..|..+.|.||+|+|||||+++|++.+..
T Consensus 43 ~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p 73 (538)
T 1yqt_A 43 VVKEGMVVGIVGPNGTGKSTAVKILAGQLIP 73 (538)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4667999999999999999999999998743
No 159
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.81 E-value=1.3e-05 Score=84.72 Aligned_cols=42 Identities=21% Similarity=0.482 Sum_probs=33.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (426)
+.++.|+.+.|.||+|+|||||++.|++.+. |..+.+.+++.
T Consensus 365 l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-------p~~G~i~~~g~ 406 (595)
T 2yl4_A 365 LSIPSGSVTALVGPSGSGKSTVLSLLLRLYD-------PASGTISLDGH 406 (595)
T ss_dssp EEECTTCEEEEECCTTSSSTHHHHHHTTSSC-------CSEEEEEETTE
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-------CCCcEEEECCE
Confidence 4577799999999999999999999999873 34444555543
No 160
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.78 E-value=1.2e-05 Score=72.43 Aligned_cols=26 Identities=46% Similarity=0.777 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
|..+.|.||+|+|||||++.|++.+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc
Confidence 34689999999999999999999884
No 161
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.77 E-value=5.9e-05 Score=88.52 Aligned_cols=128 Identities=14% Similarity=0.218 Sum_probs=84.1
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccccccc----cc--------chHHHHHHHHHHH
Q 014376 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKW----FS--------ESGKLVAKLFQKI 258 (426)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~----~~--------e~~~~v~~~f~~~ 258 (426)
+..+..++|+|+||+|||+||..+|..+... +..+++++.......+ ++ .....+..++..+
T Consensus 729 l~~G~lilIaG~PG~GKTtLalqlA~~~a~~------g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~ 802 (2050)
T 3cmu_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEIC 802 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTT------TCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhc------CCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHH
Confidence 3357899999999999999999999988532 3456777776554432 11 1223355666666
Q ss_pred HHHHHhccCcEEEEEechhhHHH-HhhhhccCCCC-ChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCC
Q 014376 259 QEMVEEENNLVFVLIDEVESLAA-ARKAALSGSEP-SDSIRVVNALLTQMDKLKSSPNVIILTTSNITA 325 (426)
Q Consensus 259 ~~~~~~~~~~~illIDEid~l~~-~r~~~ls~~e~-~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~ 325 (426)
+.+... ..+.+++||.+..+.. .....-.++.. ....+.++.+++.|..+....++.||+++....
T Consensus 803 r~l~~~-~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv~r 870 (2050)
T 3cmu_A 803 DALARS-GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 870 (2050)
T ss_dssp HHHHHH-TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEE
T ss_pred HHHhhc-cCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccccc
Confidence 554432 4689999999998864 22111112211 234566888888999888877877777765443
No 162
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.77 E-value=0.00012 Score=77.42 Aligned_cols=33 Identities=27% Similarity=0.325 Sum_probs=28.5
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHHHhcccc
Q 014376 190 LVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (426)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (426)
.+..|..+.|.||+|+|||||+++|++.+....
T Consensus 378 ~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~ 410 (607)
T 3bk7_A 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE 410 (607)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHHTSSCCSB
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCc
Confidence 456799999999999999999999999875443
No 163
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.76 E-value=9.3e-05 Score=79.22 Aligned_cols=23 Identities=35% Similarity=0.650 Sum_probs=21.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHH
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLC 211 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLa 211 (426)
+.+..|..+.|.||+|+|||||+
T Consensus 39 l~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 39 VEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EEEETTSEEEEECSTTSSHHHHH
T ss_pred EEECCCCEEEEECCCCCCHHHHh
Confidence 56778999999999999999997
No 164
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.75 E-value=0.00013 Score=75.93 Aligned_cols=31 Identities=32% Similarity=0.357 Sum_probs=27.1
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
+..|..+.|.||+|+|||||+++|++.+...
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~ 52 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPN 52 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCC
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 4568999999999999999999999987543
No 165
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.74 E-value=0.001 Score=68.61 Aligned_cols=75 Identities=16% Similarity=0.203 Sum_probs=48.6
Q ss_pred EEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhh-cCCCcEEEEEEeCCC-CcCCHHHhcccCeEEEeCCCCH
Q 014376 269 VFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL-KSSPNVIILTTSNIT-AAIDIAFVDRADIKAYVGPPTL 346 (426)
Q Consensus 269 ~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l-~~~~~viVi~TtN~~-~~ld~al~~R~~~~i~i~~p~~ 346 (426)
.+++|||...+..... .....++..+-+. +..+-.+|++|++.. +.++..+++.+...+.+...+.
T Consensus 299 ivlvIDE~~~ll~~~~------------~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~ 366 (512)
T 2ius_A 299 IVVLVDEFADLMMTVG------------KKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSK 366 (512)
T ss_dssp EEEEEETHHHHHHHHH------------HHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSH
T ss_pred EEEEEeCHHHHHhhhh------------HHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCH
Confidence 4899999987765221 1122333333222 333556666666655 4688888888988899998888
Q ss_pred HHHHHHHHH
Q 014376 347 QARYEILRS 355 (426)
Q Consensus 347 ~~r~~Il~~ 355 (426)
.+...++..
T Consensus 367 ~dsr~ilg~ 375 (512)
T 2ius_A 367 IDSRTILDQ 375 (512)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHhcCC
Confidence 888777643
No 166
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.73 E-value=9.3e-05 Score=77.18 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=28.5
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
+.+..|..+.|.||+|+|||||+++|++.+...
T Consensus 307 ~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~ 339 (538)
T 1yqt_A 307 GEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT 339 (538)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 345679999999999999999999999987543
No 167
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.73 E-value=8.3e-05 Score=68.47 Aligned_cols=27 Identities=37% Similarity=0.508 Sum_probs=23.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 192 SWNRIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 192 ~~~~~vLL~GPpGtGKTtLaralA~~l 218 (426)
..|..++|+||||+|||+|+..++...
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 348899999999999999998887655
No 168
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.72 E-value=8.1e-05 Score=73.84 Aligned_cols=122 Identities=16% Similarity=0.281 Sum_probs=66.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccc----cc--------hHHHHHHHHHHHHH
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWF----SE--------SGKLVAKLFQKIQE 260 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~----~e--------~~~~v~~~f~~~~~ 260 (426)
.++.++|+||||+|||+||..++..+... +..+++++...-...+. +. .......++..+..
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~------g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKA------GGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT------TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHC------CCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 37899999999999999999998876421 23445666543221110 00 00112333344443
Q ss_pred HHHhccCcEEEEEechhhHHHHhhhhccC--CC--CChhHHHHHHHHHHhhhhcCCCcEEEEEEeCC
Q 014376 261 MVEEENNLVFVLIDEVESLAAARKAALSG--SE--PSDSIRVVNALLTQMDKLKSSPNVIILTTSNI 323 (426)
Q Consensus 261 ~~~~~~~~~illIDEid~l~~~r~~~ls~--~e--~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~ 323 (426)
+.. ...+.+|+||.+..+..... ..+ ++ .....+.+..++..|..+....++.||+++..
T Consensus 147 l~~-~~~~~lVVIDsl~~l~~~~e--~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~ 210 (366)
T 1xp8_A 147 LVR-SGAIDVVVVDSVAALTPRAE--IEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQV 210 (366)
T ss_dssp HHT-TTCCSEEEEECTTTCCCSTT--C--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC
T ss_pred HHh-cCCCCEEEEeChHHhccccc--cccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEec
Confidence 332 24678999999988753110 000 00 00122445666666665555556666665444
No 169
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.72 E-value=0.00013 Score=80.63 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=22.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHH
Q 014376 192 SWNRIVLLHGPPGTGKTSLCKALAQK 217 (426)
Q Consensus 192 ~~~~~vLL~GPpGtGKTtLaralA~~ 217 (426)
..|+.++|.||+|+||||++|.++..
T Consensus 660 ~~g~i~~ItGpNGsGKSTlLr~ial~ 685 (934)
T 3thx_A 660 DKQMFHIITGPNMGGKSTYIRQTGVI 685 (934)
T ss_dssp TTBCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999999543
No 170
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.72 E-value=9.8e-05 Score=76.97 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=28.7
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
+.+..|..+.|.||+|+|||||+++|++.+...
T Consensus 289 ~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~ 321 (538)
T 3ozx_A 289 GEAKEGEIIGILGPNGIGKTTFARILVGEITAD 321 (538)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred ceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 446789999999999999999999999987543
No 171
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.71 E-value=0.00012 Score=77.40 Aligned_cols=32 Identities=41% Similarity=0.489 Sum_probs=28.2
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 190 LVSWNRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
.+..|..+.|.||+|+|||||+++|++.+...
T Consensus 113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~ 144 (607)
T 3bk7_A 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN 144 (607)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhCCCCCC
Confidence 46779999999999999999999999987543
No 172
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.71 E-value=0.00011 Score=71.66 Aligned_cols=133 Identities=16% Similarity=0.104 Sum_probs=83.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccccccccchHHHHHHHHHHHHHHHHhccCcEEEEEe
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLID 274 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~~~e~~~~v~~~f~~~~~~~~~~~~~~illID 274 (426)
..++|+||+|.||++.++.+++.+...- +..+..+.+++ ...++.+.+.+.... -.....+++||
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~-----------~~~~~~l~~~~~~~p-lf~~~kvvii~ 83 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQG---FEEHHTFSIDP-----------NTDWNAIFSLCQAMS-LFASRQTLLLL 83 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHHT---CCEEEEEECCT-----------TCCHHHHHHHHHHHH-HCCSCEEEEEE
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhCC---CCeeEEEEecC-----------CCCHHHHHHHhcCcC-CccCCeEEEEE
Confidence 4799999999999999999999874211 11112233321 122344554444321 12456899999
Q ss_pred chhh-HHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCC-----CCcCCHHHhcccCeEEEeCCCCHHH
Q 014376 275 EVES-LAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNI-----TAAIDIAFVDRADIKAYVGPPTLQA 348 (426)
Q Consensus 275 Eid~-l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~-----~~~ld~al~~R~~~~i~i~~p~~~~ 348 (426)
|++. +.. ...++|+..++... ...++|+++++. ...+-+++.+|+ ..+.+.+++..+
T Consensus 84 ~~~~kl~~---------------~~~~aLl~~le~p~-~~~~~il~~~~~~~~~~~~k~~~~i~sr~-~~~~~~~l~~~~ 146 (343)
T 1jr3_D 84 LPENGPNA---------------AINEQLLTLTGLLH-DDLLLIVRGNKLSKAQENAAWFTALANRS-VQVTCQTPEQAQ 146 (343)
T ss_dssp CCSSCCCT---------------THHHHHHHHHTTCB-TTEEEEEEESCCCTTTTTSHHHHHHTTTC-EEEEECCCCTTH
T ss_pred CCCCCCCh---------------HHHHHHHHHHhcCC-CCeEEEEEcCCCChhhHhhHHHHHHHhCc-eEEEeeCCCHHH
Confidence 9886 532 34577888776532 233444444432 234556778887 678899988888
Q ss_pred HHHHHHHHHHH
Q 014376 349 RYEILRSCLQE 359 (426)
Q Consensus 349 r~~Il~~~l~~ 359 (426)
....++..+++
T Consensus 147 l~~~l~~~~~~ 157 (343)
T 1jr3_D 147 LPRWVAARAKQ 157 (343)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88877776654
No 173
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.71 E-value=0.00014 Score=80.11 Aligned_cols=28 Identities=29% Similarity=0.408 Sum_probs=24.1
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 191 VSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (426)
+..|+.++|.||+|+||||++|.++...
T Consensus 670 ~~~g~i~~ItGPNGaGKSTlLr~i~~i~ 697 (918)
T 3thx_B 670 EDSERVMIITGPNMGGKSSYIKQVALIT 697 (918)
T ss_dssp TTSCCEEEEESCCCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHH
Confidence 3457899999999999999999998643
No 174
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.71 E-value=0.00015 Score=77.61 Aligned_cols=27 Identities=22% Similarity=0.460 Sum_probs=23.8
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHH
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALA 215 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA 215 (426)
+.+..|..+.|.||+|+|||||++++.
T Consensus 343 l~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 343 VKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred eEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 567889999999999999999997654
No 175
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.69 E-value=2.2e-05 Score=70.72 Aligned_cols=33 Identities=39% Similarity=0.504 Sum_probs=26.9
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHHHhcccc
Q 014376 190 LVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (426)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (426)
.+..+..++|.|||||||||+++.||+.++.++
T Consensus 21 ~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~ 53 (199)
T 3vaa_A 21 QSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPF 53 (199)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHHTCCE
T ss_pred ecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCE
Confidence 345578899999999999999999999997544
No 176
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.69 E-value=0.00012 Score=72.26 Aligned_cols=82 Identities=16% Similarity=0.232 Sum_probs=48.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccccccc----ccc--------hHHHHHHHHHHHHH
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKW----FSE--------SGKLVAKLFQKIQE 260 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~----~~e--------~~~~v~~~f~~~~~ 260 (426)
.++.++|+||||+|||+||..++..+... +..+++++........ .+. .......+...+..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~------g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT------TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC------CCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 37899999999999999999999876421 2345666653322110 000 00011222333333
Q ss_pred HHHhccCcEEEEEechhhHHH
Q 014376 261 MVEEENNLVFVLIDEVESLAA 281 (426)
Q Consensus 261 ~~~~~~~~~illIDEid~l~~ 281 (426)
+.. ...+.+|+||.+..+..
T Consensus 136 l~~-~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 136 LAR-SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHH-HTCCSEEEEECGGGCCC
T ss_pred HHh-ccCCCEEEEcCHHHhcc
Confidence 222 24678999999988763
No 177
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.66 E-value=2e-05 Score=70.04 Aligned_cols=28 Identities=39% Similarity=0.583 Sum_probs=24.8
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 191 VSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (426)
+..|..++|.||||+||||+++.|++..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 4458899999999999999999999874
No 178
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.64 E-value=2.4e-05 Score=74.06 Aligned_cols=42 Identities=17% Similarity=0.323 Sum_probs=33.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (426)
+.+..|..+.|.||+|+|||||+++|++.+. |..+.+.+++.
T Consensus 27 l~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~-------p~~G~i~~~g~ 68 (262)
T 1b0u_A 27 LQARAGDVISIIGSSGSGKSTFLRCINFLEK-------PSEGAIIVNGQ 68 (262)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSSC-------CSEEEEEETTE
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-------CCCcEEEECCE
Confidence 4567799999999999999999999999873 34444555543
No 179
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.63 E-value=0.00013 Score=72.12 Aligned_cols=27 Identities=33% Similarity=0.592 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
+..++|.||+||||||+++++++.+..
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccC
Confidence 467999999999999999999998854
No 180
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.63 E-value=0.0017 Score=67.66 Aligned_cols=75 Identities=11% Similarity=0.161 Sum_probs=49.4
Q ss_pred cEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCC--cCCHHHhcccCeEEEeCCCC
Q 014376 268 LVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITA--AIDIAFVDRADIKAYVGPPT 345 (426)
Q Consensus 268 ~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~--~ld~al~~R~~~~i~i~~p~ 345 (426)
+.+|+|||+..+..... ..+ ...+..+-+.-+..++-+|.+|.++. .++..+++.|...+.+...+
T Consensus 344 ~ivvVIDE~~~L~~~~~-----------~~~-~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s 411 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVG-----------KKV-EELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSS 411 (574)
T ss_dssp EEEEEESCCTTHHHHTC-----------HHH-HHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSC
T ss_pred cEEEEEeCHHHHhhhhh-----------HHH-HHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCC
Confidence 36899999998875321 122 22333333333444555555566665 78888999999999999988
Q ss_pred HHHHHHHHH
Q 014376 346 LQARYEILR 354 (426)
Q Consensus 346 ~~~r~~Il~ 354 (426)
..+...|+.
T Consensus 412 ~~Dsr~ILd 420 (574)
T 2iut_A 412 KIDSRTILD 420 (574)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 887776763
No 181
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.62 E-value=9.5e-05 Score=71.56 Aligned_cols=122 Identities=16% Similarity=0.252 Sum_probs=62.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccccccc----cc--------chHHHHHHH-HHHHHH
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKW----FS--------ESGKLVAKL-FQKIQE 260 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~----~~--------e~~~~v~~~-f~~~~~ 260 (426)
| .++|+||||+|||+||-.++...... .++...+++++..-+... ++ .......++ +..+..
T Consensus 29 G-iteI~G~pGsGKTtL~Lq~~~~~~~~----g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 29 G-LLILAGPSKSFKSNFGLTMVSSYMRQ----YPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp E-EEEEEESSSSSHHHHHHHHHHHHHHH----CTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred C-eEEEECCCCCCHHHHHHHHHHHHHhc----CCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 6 79999999999999988887766422 124456777765432110 00 000112222 222222
Q ss_pred HH-HhccCcEEEEEechhhHHHH--hhhhccCCCCC--hhHHHHHHHHHHhhhhcCCCcEEEEEE
Q 014376 261 MV-EEENNLVFVLIDEVESLAAA--RKAALSGSEPS--DSIRVVNALLTQMDKLKSSPNVIILTT 320 (426)
Q Consensus 261 ~~-~~~~~~~illIDEid~l~~~--r~~~ls~~e~~--~~~~~~~~ll~~ld~l~~~~~viVi~T 320 (426)
+. -....+.+++||-+..+... -.+.+...... ...+.+++.|..|..+....++.+|.|
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~t 168 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAI 168 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 10 12357899999999888532 11111111111 234556666666555544455555554
No 182
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.57 E-value=3e-05 Score=72.66 Aligned_cols=31 Identities=19% Similarity=0.381 Sum_probs=27.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 30 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 30 LSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4567799999999999999999999999873
No 183
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.57 E-value=0.0009 Score=65.80 Aligned_cols=128 Identities=16% Similarity=0.254 Sum_probs=70.4
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccc---cc---cc-----------c---ccch-H
Q 014376 190 LVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS---LF---SK-----------W---FSES-G 248 (426)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~---l~---~~-----------~---~~e~-~ 248 (426)
.+..|..+.|.||+|+|||||++.|++... ++.+.+.+.+.. +. .. + .... .
T Consensus 67 ~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~-------~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~~~~ 139 (347)
T 2obl_A 67 TCGIGQRIGIFAGSGVGKSTLLGMICNGAS-------ADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDRPAL 139 (347)
T ss_dssp CEETTCEEEEEECTTSSHHHHHHHHHHHSC-------CSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTSCHH
T ss_pred eecCCCEEEEECCCCCCHHHHHHHHhcCCC-------CCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCCCHH
Confidence 355688999999999999999999999984 334445554422 10 00 0 0011 1
Q ss_pred HHHHHHHH--HHHHHHHhccCcEEEEEechhhHHHHhh-hhccCCCC----ChhHHHHHHHHHHhhhhcC--CCc-----
Q 014376 249 KLVAKLFQ--KIQEMVEEENNLVFVLIDEVESLAAARK-AALSGSEP----SDSIRVVNALLTQMDKLKS--SPN----- 314 (426)
Q Consensus 249 ~~v~~~f~--~~~~~~~~~~~~~illIDEid~l~~~r~-~~ls~~e~----~~~~~~~~~ll~~ld~l~~--~~~----- 314 (426)
..+...+. ...+++.+....+++++|.+..+....+ -.+.-+++ ..+......+.+.++++.. .+.
T Consensus 140 ~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~r~v~lal~~p~~t~Gldp~~~~~l~~ller~~~~~~GsiT~~~ 219 (347)
T 2obl_A 140 ERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLASGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIY 219 (347)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHHTTCCCCBTTBCHHHHHHHHHHHTTCEECSSSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHHHHHHHHcCCCCcccCCCHHHHHHHHHHHHHHhCCCCCCeeeEE
Confidence 11111111 1112222334456778898877765331 11112222 2345667777888887764 344
Q ss_pred EEEEEEeCCC
Q 014376 315 VIILTTSNIT 324 (426)
Q Consensus 315 viVi~TtN~~ 324 (426)
++++.||+..
T Consensus 220 tVl~~thdl~ 229 (347)
T 2obl_A 220 TVLLESDNVN 229 (347)
T ss_dssp EEECCSSCCC
T ss_pred EEEEeCCCCC
Confidence 5666666655
No 184
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.57 E-value=4.1e-05 Score=67.15 Aligned_cols=29 Identities=24% Similarity=0.571 Sum_probs=25.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (426)
+..|+|+|+|||||||+++.|++.++.++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~ 31 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPW 31 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCe
Confidence 46799999999999999999999986443
No 185
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.57 E-value=3.8e-05 Score=67.04 Aligned_cols=27 Identities=41% Similarity=0.776 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
+..++|.|||||||||+++.||+.++.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 456999999999999999999999864
No 186
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.57 E-value=0.00019 Score=65.88 Aligned_cols=32 Identities=28% Similarity=0.651 Sum_probs=27.8
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 190 LVSWNRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
....++.|+|.||||+||+|.|+.|++.++..
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~ 56 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFN 56 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHCCE
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHCCc
Confidence 44557899999999999999999999999753
No 187
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.55 E-value=3e-05 Score=69.31 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l 218 (426)
+..++++||+|+||||++..++..+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 5679999999999999996666654
No 188
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.55 E-value=3.1e-05 Score=72.33 Aligned_cols=31 Identities=29% Similarity=0.500 Sum_probs=28.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 23 FEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp EEECTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4577799999999999999999999999874
No 189
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.55 E-value=3.7e-05 Score=72.87 Aligned_cols=31 Identities=23% Similarity=0.474 Sum_probs=27.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 28 l~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 28 LVINEGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 5677799999999999999999999999873
No 190
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.54 E-value=4.9e-05 Score=66.26 Aligned_cols=28 Identities=32% Similarity=0.506 Sum_probs=25.8
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 191 VSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (426)
+..|..+.|.||+|+|||||+|+|++.+
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4458899999999999999999999998
No 191
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.52 E-value=5.8e-05 Score=86.48 Aligned_cols=43 Identities=21% Similarity=0.372 Sum_probs=34.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (426)
+.++.|..+.|.||+|+|||||++.|++.+. |..+.+.+++.+
T Consensus 411 l~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~-------~~~G~i~i~g~~ 453 (1284)
T 3g5u_A 411 LKVKSGQTVALVGNSGCGKSTTVQLMQRLYD-------PLDGMVSIDGQD 453 (1284)
T ss_dssp EEECTTCEEEEECCSSSSHHHHHHHTTTSSC-------CSEEEEEETTEE
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-------CCCeEEEECCEE
Confidence 5677799999999999999999999998873 455566666643
No 192
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.51 E-value=0.00028 Score=74.57 Aligned_cols=28 Identities=43% Similarity=0.591 Sum_probs=24.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
|..+.|.||+|+|||||+++|++.+...
T Consensus 378 GEiv~iiG~NGsGKSTLlk~l~Gl~~p~ 405 (608)
T 3j16_B 378 SEILVMMGENGTGKTTLIKLLAGALKPD 405 (608)
T ss_dssp TCEEEEESCTTSSHHHHHHHHHTSSCCS
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 4779999999999999999999988543
No 193
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.51 E-value=8.4e-05 Score=66.85 Aligned_cols=27 Identities=30% Similarity=0.598 Sum_probs=24.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
+..++|.||||+||||+++.|++.++.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~ 55 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGL 55 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 678999999999999999999998853
No 194
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.51 E-value=0.00014 Score=74.59 Aligned_cols=31 Identities=26% Similarity=0.318 Sum_probs=28.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..++|.||+|+|||||++.|++.+.
T Consensus 288 l~i~~GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 288 VEGKAPFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp CCSCTTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eeccCCeEEEEECCCcccHHHHHHHHHHHhh
Confidence 4567789999999999999999999999985
No 195
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.50 E-value=4.8e-05 Score=70.40 Aligned_cols=31 Identities=29% Similarity=0.523 Sum_probs=28.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 29 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 29 FKIERGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4567799999999999999999999999874
No 196
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.50 E-value=5.9e-05 Score=66.64 Aligned_cols=29 Identities=31% Similarity=0.277 Sum_probs=25.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (426)
++.|+|+|||||||||+++.||+.++.++
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~ 33 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRIL 33 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 46799999999999999999999997654
No 197
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.49 E-value=0.00013 Score=70.39 Aligned_cols=43 Identities=23% Similarity=0.232 Sum_probs=33.6
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccc
Q 014376 190 LVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (426)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (426)
.+..|..+.|.||+|+||||+++.||+.+.. ..+-+.+.+.+.
T Consensus 96 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~-------~~g~V~l~g~d~ 138 (302)
T 3b9q_A 96 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN-------EGTKVLMAAGDT 138 (302)
T ss_dssp CSSSCEEEEEECCTTSCHHHHHHHHHHHHHH-------TTCCEEEECCCC
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH-------cCCeEEEEeecc
Confidence 4567899999999999999999999999853 233356666554
No 198
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.47 E-value=0.00052 Score=74.73 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l 218 (426)
.|+.++|.||+|+||||++|.++...
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH
Confidence 46789999999999999999999864
No 199
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.47 E-value=0.00054 Score=68.56 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=25.3
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 190 LVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
.+..| .+.|+||+|+|||||+++|+..++
T Consensus 57 ~~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 57 ELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp ECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred ecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 44557 899999999999999999988775
No 200
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.44 E-value=7.3e-05 Score=64.87 Aligned_cols=27 Identities=22% Similarity=0.469 Sum_probs=24.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccc
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKLSIRF 222 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (426)
.|+|.|||||||||+++.|++.++.++
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~ 29 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPI 29 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCee
Confidence 589999999999999999999987543
No 201
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.43 E-value=0.00012 Score=64.02 Aligned_cols=27 Identities=30% Similarity=0.583 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
+..++|.||||+||||+++.|++.++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~ 34 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHA 34 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCc
Confidence 678999999999999999999998853
No 202
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.43 E-value=8e-05 Score=66.74 Aligned_cols=27 Identities=37% Similarity=0.669 Sum_probs=24.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 192 SWNRIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 192 ~~~~~vLL~GPpGtGKTtLaralA~~l 218 (426)
..|..+.|.||+|+|||||++.|++.+
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 347889999999999999999999986
No 203
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.40 E-value=1.7e-05 Score=91.11 Aligned_cols=44 Identities=20% Similarity=0.337 Sum_probs=35.3
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (426)
+.++.|..+.|+||+|+|||||++.|.+.+. |..+-|.+++.++
T Consensus 1100 l~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-------p~~G~I~iDG~di 1143 (1321)
T 4f4c_A 1100 FSVEPGQTLALVGPSGCGKSTVVALLERFYD-------TLGGEIFIDGSEI 1143 (1321)
T ss_dssp EEECTTCEEEEECSTTSSTTSHHHHHTTSSC-------CSSSEEEETTEET
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHhcCcc-------CCCCEEEECCEEh
Confidence 4577899999999999999999999988773 4555677776543
No 204
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.40 E-value=8.7e-05 Score=67.18 Aligned_cols=30 Identities=27% Similarity=0.638 Sum_probs=25.3
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 190 LVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
.+..|+.+.|.||+|+|||||+++|++.+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 456689999999999999999999999873
No 205
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.39 E-value=0.00022 Score=82.79 Aligned_cols=83 Identities=16% Similarity=0.245 Sum_probs=53.5
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccccccc----cc--------chHHHHHHHHHHH
Q 014376 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKW----FS--------ESGKLVAKLFQKI 258 (426)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~~~----~~--------e~~~~v~~~f~~~ 258 (426)
+..+..++|+||||+|||+||..+|..+... +..+++++........ .+ .....+..++..+
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~------g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l 802 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEIC 802 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHT------TCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHc------CCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHH
Confidence 4558899999999999999999999987531 2244556554332110 01 0111234555555
Q ss_pred HHHHHhccCcEEEEEechhhHH
Q 014376 259 QEMVEEENNLVFVLIDEVESLA 280 (426)
Q Consensus 259 ~~~~~~~~~~~illIDEid~l~ 280 (426)
+.+... ..+.+|+||.+..+.
T Consensus 803 ~~lv~~-~~~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 803 DALARS-GAVDVIVVDSVAALT 823 (1706)
T ss_dssp HHHHHH-TCCSEEEESCSTTCC
T ss_pred HHHHHc-cCCCEEEEechhhhc
Confidence 544432 568899999999876
No 206
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.39 E-value=0.00011 Score=65.29 Aligned_cols=29 Identities=34% Similarity=0.554 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH-hccc
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQK-LSIR 221 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~-l~~~ 221 (426)
.+..++|+|+|||||||+++.|++. ++.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~ 38 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQ 38 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCE
Confidence 4678999999999999999999998 6643
No 207
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.38 E-value=0.0001 Score=65.37 Aligned_cols=29 Identities=38% Similarity=0.622 Sum_probs=25.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
.+..|+|.|+||+||||+++.|++.++..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~ 32 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLP 32 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 36789999999999999999999998643
No 208
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.37 E-value=0.0002 Score=70.76 Aligned_cols=43 Identities=23% Similarity=0.232 Sum_probs=33.7
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccc
Q 014376 190 LVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (426)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (426)
.+..|..+.|.||+|+||||+++.||+.+.. ..+-+.+.+.+.
T Consensus 153 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~-------~~G~V~l~g~D~ 195 (359)
T 2og2_A 153 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN-------EGTKVLMAAGDT 195 (359)
T ss_dssp CSSSSEEEEEECCTTSCHHHHHHHHHHHHHH-------TTCCEEEECCCC
T ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHhhccc-------cCCEEEEecccc
Confidence 4567899999999999999999999999853 233366666554
No 209
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.37 E-value=0.00063 Score=69.00 Aligned_cols=41 Identities=20% Similarity=0.206 Sum_probs=33.0
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecc
Q 014376 190 LVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAH 237 (426)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~ 237 (426)
.+..|..+.|.||+|+|||||++.|++... ++.+.+.+.+.
T Consensus 153 ~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~-------~~~G~i~~~G~ 193 (438)
T 2dpy_A 153 TVGRGQRMGLFAGSGVGKSVLLGMMARYTR-------ADVIVVGLIGE 193 (438)
T ss_dssp CCBTTCEEEEEECTTSSHHHHHHHHHHHSC-------CSEEEEEEESC
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhcccC-------CCeEEEEEece
Confidence 455688999999999999999999999984 34555666654
No 210
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.37 E-value=0.00023 Score=66.55 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=25.2
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 192 SWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 192 ~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
..+..++|.|+|||||||+++.|++.++
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3467899999999999999999999985
No 211
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.37 E-value=0.0001 Score=64.93 Aligned_cols=28 Identities=46% Similarity=0.686 Sum_probs=25.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
+..|+|+|+||+||||+++.+++.++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~ 38 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLK 38 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCe
Confidence 5679999999999999999999998654
No 212
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.36 E-value=0.00093 Score=74.58 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l 218 (426)
|+.++|.||+|+||||++|.+ +.+
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~ 812 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLL 812 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHH
T ss_pred CcEEEEECCCCCChHHHHHHH-HHH
Confidence 688999999999999999999 654
No 213
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.36 E-value=0.00022 Score=65.74 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
|..++++||+|+||||++..++..+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~ 37 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLE 37 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 67899999999999999988888774
No 214
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.36 E-value=7.4e-05 Score=85.85 Aligned_cols=43 Identities=19% Similarity=0.237 Sum_probs=35.5
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (426)
+.++.|..+.|.||+|+|||||++.|.+.+ .|..+.+.+++.+
T Consensus 439 l~i~~G~~vaivG~sGsGKSTll~ll~~~~-------~~~~G~I~idG~~ 481 (1321)
T 4f4c_A 439 LRVNAGQTVALVGSSGCGKSTIISLLLRYY-------DVLKGKITIDGVD 481 (1321)
T ss_dssp EEECTTCEEEEEECSSSCHHHHHHHHTTSS-------CCSEEEEEETTEE
T ss_pred EeecCCcEEEEEecCCCcHHHHHHHhcccc-------ccccCcccCCCcc
Confidence 457789999999999999999999999988 3556667777644
No 215
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.36 E-value=0.00044 Score=74.87 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l 218 (426)
|+.++|.||+|+||||++|.+++..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 7889999999999999999999875
No 216
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.36 E-value=9.6e-05 Score=65.23 Aligned_cols=28 Identities=39% Similarity=0.755 Sum_probs=24.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
|..++|.|+|||||||+++.|++.++..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~ 31 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFK 31 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 5679999999999999999999988643
No 217
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.35 E-value=0.0014 Score=64.98 Aligned_cols=130 Identities=21% Similarity=0.336 Sum_probs=67.5
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccc---------------cccccccch-HHHH--
Q 014376 190 LVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS---------------LFSKWFSES-GKLV-- 251 (426)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~---------------l~~~~~~e~-~~~v-- 251 (426)
.+..|..++|.||+|+|||+|++.|++.++... ++..++.+-... ++.....+. ...+
T Consensus 170 pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~----~~v~~I~~lIGER~~Ev~~~~~~~~~~vV~atadep~~~r~~~ 245 (422)
T 3ice_A 170 PIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNH----PDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQV 245 (422)
T ss_dssp CCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHC----TTSEEEEEEESSCHHHHHHHHTTCSSEEEEECTTSCHHHHHHH
T ss_pred eecCCcEEEEecCCCCChhHHHHHHHHHHhhcC----CCeeEEEEEecCChHHHHHHHHHhCeEEEEeCCCCCHHHHHHH
Confidence 355688899999999999999999999875431 233333332110 000011111 1111
Q ss_pred HH-HHHHHHHHHHhccCcEEEEEechhhHHHHhhh-hccCCCC-C--hhHHHHHHHHHHhhh---hcCCCcEEEEEEeCC
Q 014376 252 AK-LFQKIQEMVEEENNLVFVLIDEVESLAAARKA-ALSGSEP-S--DSIRVVNALLTQMDK---LKSSPNVIILTTSNI 323 (426)
Q Consensus 252 ~~-~f~~~~~~~~~~~~~~illIDEid~l~~~r~~-~ls~~e~-~--~~~~~~~~ll~~ld~---l~~~~~viVi~TtN~ 323 (426)
.. ....++ ++.+....+++++|++.+++.+... .+..+++ + ....+...+-+.+++ +...+.+..+.|.-.
T Consensus 246 a~~alt~AE-yfrd~G~dVLil~DslTR~A~A~revs~~~Ge~ps~Gyp~~~~~~~~rl~erA~~~~~~GSIT~i~tvlv 324 (422)
T 3ice_A 246 AEMVIEKAK-RLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALI 324 (422)
T ss_dssp HHHHHHHHH-HHHHTSCEEEEEEECHHHHHHHHHHHSCCSSCBCSSSCBHHHHHHHHHHHTTCEEESSSCEEEEEEEECC
T ss_pred HHHHHHHHH-HHHhcCCCEEEEEeCchHHHHHHHHHHHhcCCCCCCCcCHHHHhhhHHHHHhccccCCCcceeEEEEEEe
Confidence 11 122233 3335577899999999998865432 2233332 2 112233333333333 223455666666555
Q ss_pred C
Q 014376 324 T 324 (426)
Q Consensus 324 ~ 324 (426)
+
T Consensus 325 ~ 325 (422)
T 3ice_A 325 D 325 (422)
T ss_dssp S
T ss_pred c
Confidence 4
No 218
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.35 E-value=7.8e-05 Score=70.66 Aligned_cols=30 Identities=30% Similarity=0.470 Sum_probs=27.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (426)
+.+..|..+.|.||+|+|||||+++|++.+
T Consensus 41 l~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 41 LDVHPGEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456779999999999999999999999974
No 219
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.35 E-value=9.5e-05 Score=64.84 Aligned_cols=27 Identities=37% Similarity=0.661 Sum_probs=24.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccc
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKLSIRF 222 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (426)
.++|.|||||||||+++.||+.++.++
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~ 32 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVF 32 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCE
Confidence 489999999999999999999997543
No 220
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.34 E-value=9.6e-05 Score=67.70 Aligned_cols=30 Identities=27% Similarity=0.371 Sum_probs=24.8
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (426)
+.+..|+.+.|.||+|+|||||++.|++.+
T Consensus 18 l~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 18 GSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ----CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred eecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 456678999999999999999999999977
No 221
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.33 E-value=0.0001 Score=66.02 Aligned_cols=28 Identities=25% Similarity=0.456 Sum_probs=24.8
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 191 VSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (426)
+..|..+.|.||+||||||+++.|++.+
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3457889999999999999999999987
No 222
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.32 E-value=0.00012 Score=64.58 Aligned_cols=26 Identities=31% Similarity=0.615 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+..|+|.|+|||||||+++.|+..++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999999999886
No 223
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.32 E-value=0.00013 Score=65.65 Aligned_cols=26 Identities=35% Similarity=0.539 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
|..+.|.||+||||||++++|++.++
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999999985
No 224
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.28 E-value=0.00094 Score=69.90 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=35.5
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHH
Q 014376 159 ESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQK 217 (426)
Q Consensus 159 ~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~ 217 (426)
..++|.+...+.|.+.+... . ...+.++|+||+|+|||+||+.+++.
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~------~------~~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKL------K------GEPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTS------T------TSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CeecccHHHHHHHHHHHhcc------c------CCCceEEEEcCCCCCHHHHHHHHHhc
Confidence 35788888888887765321 0 11468999999999999999999764
No 225
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.28 E-value=4.9e-05 Score=87.13 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=27.6
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||++.|++.+.
T Consensus 1054 l~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~ 1084 (1284)
T 3g5u_A 1054 LEVKKGQTLALVGSSGCGKSTVVQLLERFYD 1084 (1284)
T ss_dssp EEECSSSEEEEECSSSTTHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 4567789999999999999999999999873
No 226
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.27 E-value=0.00013 Score=64.45 Aligned_cols=28 Identities=32% Similarity=0.627 Sum_probs=24.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccc
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (426)
..|+|.|+|||||||+++.|++.++.++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~ 30 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGL 30 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 3599999999999999999999997654
No 227
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.27 E-value=0.00015 Score=64.05 Aligned_cols=27 Identities=30% Similarity=0.639 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
+..|+|.|+|||||||+++.|++.++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~ 29 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGY 29 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467999999999999999999999864
No 228
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.27 E-value=0.00041 Score=66.32 Aligned_cols=26 Identities=42% Similarity=0.571 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l 218 (426)
.+..++|.||||+||||+++.|+..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999999987
No 229
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.27 E-value=0.00015 Score=64.28 Aligned_cols=28 Identities=32% Similarity=0.710 Sum_probs=25.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
+..|+|.|+|||||||+++.|++.++.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~ 36 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYT 36 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 4679999999999999999999998653
No 230
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.26 E-value=0.00016 Score=62.83 Aligned_cols=28 Identities=32% Similarity=0.508 Sum_probs=25.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccc
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (426)
.+++|.|++||||||+++.||..++.++
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~ 35 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEV 35 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4699999999999999999999998654
No 231
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.26 E-value=0.00018 Score=64.53 Aligned_cols=28 Identities=50% Similarity=0.731 Sum_probs=25.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
+..|+|.|+|||||||+++.|++.++.+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~ 47 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIP 47 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 4579999999999999999999998643
No 232
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.25 E-value=0.00012 Score=64.24 Aligned_cols=29 Identities=34% Similarity=0.623 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (426)
+..|+|.|+|||||||+++.|++.++.++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~ 33 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSF 33 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCE
Confidence 46799999999999999999999987654
No 233
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.24 E-value=0.00016 Score=65.00 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=23.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
..|+|.|++|+||||+++.|++.++.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~ 44 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGY 44 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 56999999999999999999999864
No 234
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.24 E-value=0.00042 Score=67.34 Aligned_cols=28 Identities=39% Similarity=0.590 Sum_probs=24.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
+..++|+||+||||||+++.||+.++..
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~ 32 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCE 32 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 3579999999999999999999998643
No 235
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.24 E-value=0.00017 Score=63.71 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
|+.+.|.||+|+|||||++.|++.+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 67899999999999999999999864
No 236
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.24 E-value=9.8e-05 Score=70.88 Aligned_cols=31 Identities=29% Similarity=0.523 Sum_probs=28.3
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.+..|..+.|.||+|+|||||+++|++.+.
T Consensus 59 l~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 59 FKIERGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 5677899999999999999999999999874
No 237
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.23 E-value=0.00017 Score=67.04 Aligned_cols=33 Identities=18% Similarity=0.394 Sum_probs=26.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
+.+..+..+.|.||+|+||||+++.|++.++..
T Consensus 20 l~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 20 FQSMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp ---CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 455668889999999999999999999988643
No 238
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.23 E-value=0.00016 Score=63.16 Aligned_cols=25 Identities=28% Similarity=0.596 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH-Hhc
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQ-KLS 219 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~-~l~ 219 (426)
..|+|.|+|||||||+++.|++ .++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~ 28 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPG 28 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTT
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCC
Confidence 5699999999999999999998 444
No 239
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.22 E-value=0.0002 Score=65.30 Aligned_cols=28 Identities=29% Similarity=0.561 Sum_probs=25.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
+..|+|.|+|||||||+++.||+.++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~ 31 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAA 31 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCce
Confidence 4679999999999999999999998643
No 240
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.21 E-value=0.00016 Score=64.34 Aligned_cols=26 Identities=38% Similarity=0.710 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
|+.+.|.||+|+|||||+++|++.+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35689999999999999999999885
No 241
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.20 E-value=0.0069 Score=63.02 Aligned_cols=44 Identities=16% Similarity=0.230 Sum_probs=33.5
Q ss_pred hchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHH
Q 014376 162 IYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQ 216 (426)
Q Consensus 162 v~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~ 216 (426)
+|.++.++.|.+.+... .+- ..+.+.|+|+.|+||||||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~-----~~~------~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM-----CDL------DSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHH-----TTS------SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc-----cCC------CceEEEEEcCCCCCHHHHHHHHHH
Confidence 48888888888776421 111 136899999999999999999997
No 242
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.20 E-value=0.00088 Score=69.49 Aligned_cols=29 Identities=31% Similarity=0.446 Sum_probs=26.0
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+..|..++|.||||+|||||++.+++...
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 44589999999999999999999999874
No 243
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.20 E-value=0.00019 Score=61.99 Aligned_cols=26 Identities=31% Similarity=0.745 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
..|+|.|||||||||+++.| +.++.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~ 27 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAK 27 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCE
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCc
Confidence 36899999999999999999 777643
No 244
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.20 E-value=0.00019 Score=64.99 Aligned_cols=27 Identities=44% Similarity=0.731 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
.|..+.|.||+|+|||||++.|++.+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 378899999999999999999999985
No 245
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.19 E-value=0.00019 Score=63.79 Aligned_cols=27 Identities=33% Similarity=0.773 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
+..|+|.|+|||||||+++.|++.++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~ 38 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGF 38 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467999999999999999999999864
No 246
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.19 E-value=0.00019 Score=65.12 Aligned_cols=27 Identities=26% Similarity=0.521 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
.|+.+.|.||+|+||||+++.|++.+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 368899999999999999999999874
No 247
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.19 E-value=0.00087 Score=68.25 Aligned_cols=30 Identities=20% Similarity=0.458 Sum_probs=26.1
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
+..|..++|.|+||+|||+|+..+|..+..
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~ 229 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVAT 229 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 445889999999999999999999998743
No 248
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.19 E-value=0.00019 Score=65.29 Aligned_cols=34 Identities=32% Similarity=0.678 Sum_probs=28.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccc
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLF 240 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~ 240 (426)
.++|.||||+||+|.|+.||+.++. ..++..+++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~-----------~~istGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGF-----------VHISTGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC-----------EEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC-----------eEEcHHHHH
Confidence 4889999999999999999999975 446666654
No 249
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.18 E-value=0.00051 Score=64.54 Aligned_cols=25 Identities=40% Similarity=0.720 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l 218 (426)
+..|+|.|+|||||||+++.|+..+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999999985
No 250
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.18 E-value=0.00021 Score=66.43 Aligned_cols=27 Identities=33% Similarity=0.783 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
+..+.|.||||+||||+++.|++.++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~ 53 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGL 53 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467999999999999999999988864
No 251
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.17 E-value=0.0002 Score=62.33 Aligned_cols=28 Identities=29% Similarity=0.549 Sum_probs=24.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccc
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (426)
..|+|.|+|||||||+++.|++.++.++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~ 30 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEF 30 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 3589999999999999999999987543
No 252
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.17 E-value=0.00014 Score=66.95 Aligned_cols=30 Identities=33% Similarity=0.534 Sum_probs=21.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHH-HHh
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALA-QKL 218 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA-~~l 218 (426)
+.+..|..+.|.||+|+||||+++.|+ +.+
T Consensus 22 l~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 22 MLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 567778999999999999999999999 876
No 253
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.16 E-value=0.00022 Score=68.89 Aligned_cols=29 Identities=34% Similarity=0.611 Sum_probs=26.3
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 190 LVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (426)
.++.|..+.|+||+|+|||||++.|++.+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 35558999999999999999999999987
No 254
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.15 E-value=0.00016 Score=67.86 Aligned_cols=29 Identities=38% Similarity=0.576 Sum_probs=26.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (426)
+..+.|.|++|+||||+++.||+.++.++
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~ 76 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTF 76 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcE
Confidence 56799999999999999999999997654
No 255
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.15 E-value=0.00024 Score=62.60 Aligned_cols=27 Identities=26% Similarity=0.660 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
+..|+|.|+|||||||+++.|++.++.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 32 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGW 32 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467999999999999999999999864
No 256
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.15 E-value=0.00022 Score=65.36 Aligned_cols=28 Identities=18% Similarity=0.497 Sum_probs=25.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
+..|+|.|+|||||||+++.|++.++..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~ 34 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELK 34 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 4679999999999999999999998643
No 257
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.14 E-value=0.0003 Score=63.01 Aligned_cols=28 Identities=29% Similarity=0.631 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
....|+|.|++||||||+++.|++.++.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~ 41 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSF 41 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 3567999999999999999999999864
No 258
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.14 E-value=0.00025 Score=66.51 Aligned_cols=26 Identities=31% Similarity=0.494 Sum_probs=23.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
.++|.|||||||||+++.||+.++..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~ 28 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWP 28 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCe
Confidence 58999999999999999999998643
No 259
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.14 E-value=0.001 Score=72.65 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=26.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHH-HHHHh
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKA-LAQKL 218 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLara-lA~~l 218 (426)
+.+..|..+.|.|++|+|||||++. |++.+
T Consensus 518 l~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l 548 (842)
T 2vf7_A 518 VRFPLGVMTSVTGVSGSGKSTLVSQALVDAL 548 (842)
T ss_dssp EEEESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred EEEcCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence 5678899999999999999999997 66554
No 260
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.14 E-value=0.00025 Score=64.62 Aligned_cols=28 Identities=39% Similarity=0.827 Sum_probs=24.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
+..+.|.||+||||||+++.|++.++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~ 32 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWH 32 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3579999999999999999999998743
No 261
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.14 E-value=0.0002 Score=63.52 Aligned_cols=25 Identities=40% Similarity=0.918 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l 218 (426)
|..++|.||||+||||+++.|++..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCcHHHHHHHHhccc
Confidence 4678999999999999999999754
No 262
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.14 E-value=0.00021 Score=64.39 Aligned_cols=27 Identities=48% Similarity=0.642 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
.|+.+.|.||+|+|||||++.|++.+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 367799999999999999999999873
No 263
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.14 E-value=0.00026 Score=63.49 Aligned_cols=27 Identities=22% Similarity=0.433 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
+..|+|.|+|||||||+++.|++.++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 467999999999999999999999864
No 264
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.12 E-value=0.00025 Score=63.95 Aligned_cols=27 Identities=33% Similarity=0.469 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
.+..+.|.||+|||||||++.|++.++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 367899999999999999999999986
No 265
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.12 E-value=0.00022 Score=62.86 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
.|+|.|+|||||||+++.|++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999986
No 266
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.11 E-value=0.00024 Score=64.86 Aligned_cols=28 Identities=25% Similarity=0.574 Sum_probs=24.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
+..|+|.|||||||||+++.||+.++..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~ 32 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLA 32 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 4569999999999999999999999753
No 267
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.11 E-value=0.00034 Score=62.71 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
.|.|.|++||||||+++.|++ ++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~ 26 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGA 26 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTC
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCC
Confidence 589999999999999999999 754
No 268
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.10 E-value=0.00025 Score=63.88 Aligned_cols=27 Identities=26% Similarity=0.466 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
.++.++|.||||+||||+++.|++.++
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 477899999999999999999999874
No 269
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.10 E-value=0.00056 Score=66.74 Aligned_cols=42 Identities=26% Similarity=0.285 Sum_probs=32.2
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccc
Q 014376 192 SWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLF 240 (426)
Q Consensus 192 ~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~ 240 (426)
..|..+.|.||+|+||||+++.||+.+.. ..+-+.+.+.+++
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~-------~~g~V~l~g~D~~ 168 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKN-------HGFSVVIAASDTF 168 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHH-------TTCCEEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh-------cCCEEEEEeeccc
Confidence 45789999999999999999999998853 2333556655543
No 270
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.10 E-value=0.0004 Score=61.01 Aligned_cols=25 Identities=40% Similarity=0.537 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l 218 (426)
|..+.|.|++||||||+++.|++.+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999999988
No 271
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.09 E-value=0.0028 Score=69.82 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.8
Q ss_pred ccccCCcEEEEEcCCCCcHHHHH
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLC 211 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLa 211 (426)
+.+..|..+.|.||+|+|||||+
T Consensus 605 l~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 605 VEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp EEEESSSEEEEECSTTSSHHHHH
T ss_pred eEEcCCcEEEEEccCCCChhhhH
Confidence 45677899999999999999997
No 272
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.08 E-value=0.0003 Score=64.57 Aligned_cols=28 Identities=29% Similarity=0.523 Sum_probs=25.0
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 192 SWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 192 ~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
..|+.+.|.||+|+|||||+++|++.+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3488999999999999999999999875
No 273
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.07 E-value=0.00073 Score=64.93 Aligned_cols=27 Identities=30% Similarity=0.445 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
.++.++|.||+|+||||++..||..+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999999885
No 274
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.06 E-value=0.0003 Score=69.93 Aligned_cols=29 Identities=34% Similarity=0.502 Sum_probs=25.9
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+..++.++|+||||+|||||++++++.++
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 44588999999999999999999999764
No 275
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.06 E-value=0.0023 Score=58.65 Aligned_cols=25 Identities=40% Similarity=0.521 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQK 217 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~ 217 (426)
.|..++|+|+||+|||++|..+|..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 4889999999999999999887654
No 276
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.06 E-value=0.00036 Score=64.29 Aligned_cols=28 Identities=32% Similarity=0.581 Sum_probs=25.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
+..|+|.|+|||||||+++.||+.++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~ 43 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVC 43 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 4679999999999999999999998643
No 277
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.05 E-value=0.00032 Score=63.49 Aligned_cols=26 Identities=31% Similarity=0.567 Sum_probs=23.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
.|+|.|||||||||+++.|++.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~ 27 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIP 27 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 48899999999999999999998653
No 278
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.05 E-value=0.00031 Score=63.62 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=23.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
.|+|.|||||||||+++.|++.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~ 27 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIP 27 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 38899999999999999999998643
No 279
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.05 E-value=0.00033 Score=63.79 Aligned_cols=28 Identities=25% Similarity=0.647 Sum_probs=24.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
+..|+|.|+|||||||+++.||+.++.+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~ 32 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLA 32 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCce
Confidence 3569999999999999999999999754
No 280
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.05 E-value=0.00044 Score=66.75 Aligned_cols=41 Identities=29% Similarity=0.302 Sum_probs=32.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccccc
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLF 240 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~ 240 (426)
.+..+.|.||+|+||||+++.||+.+.. ..+-+.+.+.+++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~-------~~g~V~l~g~D~~ 141 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN-------LGKKVMFCAGDTF 141 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT-------TTCCEEEECCCCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh-------cCCEEEEEeecCC
Confidence 4689999999999999999999999853 2334666666553
No 281
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.05 E-value=0.00036 Score=60.37 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=24.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccc
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKLSIRF 222 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (426)
.|+|.|++||||||+++.|++.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~ 28 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPF 28 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 489999999999999999999987543
No 282
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.05 E-value=0.00032 Score=63.09 Aligned_cols=29 Identities=21% Similarity=0.353 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
.+..|+|.|++||||||+++.|++.++..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 36789999999999999999999998754
No 283
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.04 E-value=0.00037 Score=64.83 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=24.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
+..|+|.|||||||||+++.|++.++..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g~~ 56 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHCYC 56 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 4679999999999999999999998653
No 284
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.04 E-value=0.0026 Score=61.53 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=23.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
|..++|.|+||+|||+|+..+|....
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a 93 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMS 93 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 88999999999999999999997764
No 285
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.04 E-value=0.00037 Score=65.21 Aligned_cols=28 Identities=46% Similarity=0.892 Sum_probs=25.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
+..+.|.||+||||||+++.||+.++..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~ 54 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWR 54 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 5789999999999999999999998754
No 286
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.03 E-value=0.0012 Score=67.27 Aligned_cols=74 Identities=19% Similarity=0.215 Sum_probs=57.5
Q ss_pred cEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEE---------eC---CCCcCCHHHhccc
Q 014376 268 LVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTT---------SN---ITAAIDIAFVDRA 335 (426)
Q Consensus 268 ~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~T---------tN---~~~~ld~al~~R~ 335 (426)
+.|++|||++.+.. ...+.|++.|+.-. ..++|++| ++ .+..+++.+++||
T Consensus 296 ~~VliIDEa~~l~~---------------~a~~aLlk~lEe~~--~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~ 358 (456)
T 2c9o_A 296 PGVLFVDEVHMLDI---------------ECFTYLHRALESSI--APIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRV 358 (456)
T ss_dssp ECEEEEESGGGCBH---------------HHHHHHHHHTTSTT--CCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTE
T ss_pred ceEEEEechhhcCH---------------HHHHHHHHHhhccC--CCEEEEecCCccccccccccccccccCChhHHhhc
Confidence 36999999998854 57788999888633 33555566 32 1566899999999
Q ss_pred CeEEEeCCCCHHHHHHHHHHHHHH
Q 014376 336 DIKAYVGPPTLQARYEILRSCLQE 359 (426)
Q Consensus 336 ~~~i~i~~p~~~~r~~Il~~~l~~ 359 (426)
.. +.+++++.++..++++..+..
T Consensus 359 ~~-~~~~~~~~~e~~~iL~~~~~~ 381 (456)
T 2c9o_A 359 MI-IRTMLYTPQEMKQIIKIRAQT 381 (456)
T ss_dssp EE-EECCCCCHHHHHHHHHHHHHH
T ss_pred ce-eeCCCCCHHHHHHHHHHHHHH
Confidence 66 699999999999999988764
No 287
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.02 E-value=0.0036 Score=56.25 Aligned_cols=125 Identities=17% Similarity=0.216 Sum_probs=68.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEE---ecc------ccccc-----------cccch------H
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEV---NAH------SLFSK-----------WFSES------G 248 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i---~~~------~l~~~-----------~~~e~------~ 248 (426)
..+++|+++|.||||+|-.+|-..--. +..+..+ .+. .+... |.... .
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~------G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~ 102 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGH------GKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADT 102 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHT------TCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHC------CCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHH
Confidence 468999999999999999998776211 0111112 110 01111 11111 2
Q ss_pred HHHHHHHHHHHHHHHhccCcEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCCCCcCC
Q 014376 249 KLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAID 328 (426)
Q Consensus 249 ~~v~~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~~~~ld 328 (426)
......+..+++.+. .....+|++||+.....-. -. -...++..+.. ++...-||.|.|.+ +
T Consensus 103 ~~a~~~l~~a~~~l~-~~~yDlvILDEi~~al~~g------~l------~~~ev~~~l~~--Rp~~~~vIlTGr~a---p 164 (196)
T 1g5t_A 103 AACMAVWQHGKRMLA-DPLLDMVVLDELTYMVAYD------YL------PLEEVISALNA--RPGHQTVIITGRGC---H 164 (196)
T ss_dssp HHHHHHHHHHHHHTT-CTTCSEEEEETHHHHHHTT------SS------CHHHHHHHHHT--SCTTCEEEEECSSC---C
T ss_pred HHHHHHHHHHHHHHh-cCCCCEEEEeCCCccccCC------CC------CHHHHHHHHHh--CcCCCEEEEECCCC---c
Confidence 334455555555442 2456899999987654421 11 12335555543 34555666666653 5
Q ss_pred HHHhcccCeEEEeCC
Q 014376 329 IAFVDRADIKAYVGP 343 (426)
Q Consensus 329 ~al~~R~~~~i~i~~ 343 (426)
+.++...|.+-++..
T Consensus 165 ~~l~e~AD~VTem~~ 179 (196)
T 1g5t_A 165 RDILDLADTVSELRP 179 (196)
T ss_dssp HHHHHHCSEEEECCC
T ss_pred HHHHHhCcceeeecc
Confidence 677888887776643
No 288
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.01 E-value=0.00037 Score=62.65 Aligned_cols=26 Identities=35% Similarity=0.542 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
..+.|.||+||||||+++.|++ ++.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~ 28 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVP 28 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCC
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCc
Confidence 3589999999999999999988 6543
No 289
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.01 E-value=0.0024 Score=65.04 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
.|..++|+||+|+|||+|++.++.....
T Consensus 150 kGq~~~i~G~sGvGKTtL~~~l~~~~~~ 177 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLIQELIHNIAQ 177 (473)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCccHHHHHHHhhhhh
Confidence 3677999999999999999999887654
No 290
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.01 E-value=0.00039 Score=61.89 Aligned_cols=27 Identities=22% Similarity=0.539 Sum_probs=24.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccc
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKLSIRF 222 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (426)
.|.|.|++||||||+++.|++.++..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~ 28 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEI 28 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcE
Confidence 489999999999999999999997543
No 291
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.98 E-value=0.00045 Score=61.70 Aligned_cols=25 Identities=20% Similarity=0.569 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l 218 (426)
+..|.|.|++||||||+++.|++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5779999999999999999999988
No 292
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.97 E-value=0.00041 Score=62.42 Aligned_cols=28 Identities=21% Similarity=0.445 Sum_probs=25.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
+..|+|.|++||||||+++.|++.++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 5779999999999999999999998643
No 293
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.97 E-value=0.0005 Score=60.77 Aligned_cols=28 Identities=39% Similarity=0.571 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
.+..++|.|+||+||||+++.+++.++.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3678999999999999999999999853
No 294
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.96 E-value=0.00027 Score=64.37 Aligned_cols=27 Identities=44% Similarity=0.629 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
|..+.|.||+|+|||||+++|++. ...
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl-~p~ 48 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ-ALQ 48 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH-HHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC-CCc
Confidence 788999999999999999999998 543
No 295
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.95 E-value=0.0013 Score=66.81 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
.|..++|.|+||+|||+++..+|....
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 388999999999999999999998774
No 296
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.94 E-value=0.00037 Score=62.76 Aligned_cols=29 Identities=34% Similarity=0.389 Sum_probs=25.7
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 190 LVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (426)
.+..+..+.|.|++|+||||+++.|++.+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35557889999999999999999999987
No 297
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.93 E-value=0.00052 Score=62.15 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+..++|.|++|+||||+++.|++.++
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 67899999999999999999999885
No 298
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.93 E-value=0.00052 Score=66.49 Aligned_cols=30 Identities=20% Similarity=0.225 Sum_probs=27.0
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
+..|..+.|.||+|+|||||++.|++.+..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 556889999999999999999999999853
No 299
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.92 E-value=0.00035 Score=69.07 Aligned_cols=38 Identities=32% Similarity=0.599 Sum_probs=30.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEec
Q 014376 192 SWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNA 236 (426)
Q Consensus 192 ~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~ 236 (426)
..|..++|.||+|+|||||+++|++.+. +..+.+.++.
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~-------~~~g~I~ie~ 210 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIP-------FDQRLITIED 210 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSC-------TTSCEEEEES
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCC-------CCceEEEECC
Confidence 3467899999999999999999999874 3445566654
No 300
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.91 E-value=0.0022 Score=59.05 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=19.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHH
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQ 216 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~ 216 (426)
.|+.+++.||+|||||+++..+.-
T Consensus 75 ~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 75 QNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCcHHhHHHHHh
Confidence 368899999999999987766543
No 301
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.88 E-value=0.0011 Score=61.74 Aligned_cols=47 Identities=26% Similarity=0.412 Sum_probs=32.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccccc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFS 241 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l~~ 241 (426)
...|.|.|++||||||+++.|+..++.++.. .....++.++..++..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d-~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVD-YRQKQVVILSQDSFYR 68 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSC-GGGCSEEEEEGGGGBC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhccc-ccCCceEEEecCcccc
Confidence 3579999999999999999999999865311 1122334566666543
No 302
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.86 E-value=0.00081 Score=66.07 Aligned_cols=27 Identities=33% Similarity=0.753 Sum_probs=25.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccc
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKLSIRF 222 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (426)
.++|+||||+||||++++||+.++.++
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 499999999999999999999998776
No 303
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.85 E-value=0.00056 Score=62.00 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=23.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
.|+|.|+|||||||+++.|++.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~ 27 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIP 27 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 38999999999999999999998643
No 304
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.85 E-value=0.00065 Score=61.31 Aligned_cols=27 Identities=22% Similarity=0.413 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
.|+.+.|.||+|+|||||++.|++...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 478899999999999999999998864
No 305
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.85 E-value=0.001 Score=64.21 Aligned_cols=27 Identities=33% Similarity=0.632 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
+..++|.||+|+|||+|+..+|+.++.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~ 36 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPV 36 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCE
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCC
Confidence 467899999999999999999999853
No 306
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.85 E-value=0.0063 Score=54.11 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=18.2
Q ss_pred CcEEEEEcCCCCcHHHH-HHHHHHHh
Q 014376 194 NRIVLLHGPPGTGKTSL-CKALAQKL 218 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtL-aralA~~l 218 (426)
++.+++.+|+|+|||.. +-.+...+
T Consensus 38 ~~~~li~~~TGsGKT~~~~~~~~~~l 63 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAFALPIAERL 63 (207)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCCEEEECCCCChHHHHHHHHHHHHH
Confidence 45699999999999986 33344443
No 307
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.83 E-value=0.00065 Score=62.18 Aligned_cols=25 Identities=32% Similarity=0.602 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
.|+|.|+|||||||+++.|++.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~ 26 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSL 26 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4899999999999999999999864
No 308
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.82 E-value=0.0007 Score=62.75 Aligned_cols=28 Identities=43% Similarity=0.764 Sum_probs=24.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
+..+.|.||+||||||+++.|++.++..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~ 36 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGAR 36 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3579999999999999999999998643
No 309
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.82 E-value=0.0007 Score=59.71 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l 218 (426)
.|.|.|++||||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999988
No 310
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.81 E-value=0.00042 Score=72.79 Aligned_cols=26 Identities=46% Similarity=0.742 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
++.++|.|||||||||++++++..+.
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~ 229 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAE 229 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 36799999999999999999998874
No 311
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.80 E-value=0.0067 Score=68.49 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=36.2
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 159 ESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 159 ~~lv~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (426)
..++|.++..++|.+.+... . . ..+.+.|+|+.|.|||+||+.+++..
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~----~---~-----~~~~v~i~G~gG~GKTtLa~~~~~~~ 171 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKL----N---G-----EPGWVTIYGMAGCGKSVLAAEAVRDH 171 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTT----T---T-----SCEEEEEECSTTSSHHHHHHHHTCCH
T ss_pred ceeccHHHHHHHHHHHHhhc----c---C-----CCCEEEEEeCCCCCHHHHHHHHhcCh
Confidence 35888888888888775321 1 1 14679999999999999999887763
No 312
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.78 E-value=0.00053 Score=70.96 Aligned_cols=38 Identities=18% Similarity=0.361 Sum_probs=30.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS 238 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~ 238 (426)
|.+++|.||+||||||+++++++.+. ++.+.+.+....
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~-------~~~giitied~~ 297 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIP-------PDAKVVSIEDTR 297 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSC-------TTCCEEEEESSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC-------CCCCEEEEcCcc
Confidence 56799999999999999999998873 345566666543
No 313
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.77 E-value=0.00078 Score=59.66 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l 218 (426)
.|.|.|++||||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999998
No 314
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.76 E-value=0.00079 Score=60.18 Aligned_cols=27 Identities=33% Similarity=0.730 Sum_probs=24.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccc
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKLSIRF 222 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (426)
.+.|.|++||||||+++.|++.++.++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~ 30 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPY 30 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCce
Confidence 689999999999999999999997544
No 315
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.74 E-value=0.00089 Score=60.18 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+..+.|.||+|+||||+++.|++.+.
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 67899999999999999999999874
No 316
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.72 E-value=0.0085 Score=63.25 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 014376 197 VLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 197 vLL~GPpGtGKTtLaralA~~l 218 (426)
+.|.||+|+|||||+++|++.+
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC
T ss_pred EEEECCCCChHHHHHHHHhCCC
Confidence 9999999999999999999976
No 317
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.72 E-value=0.00099 Score=61.39 Aligned_cols=29 Identities=21% Similarity=0.485 Sum_probs=25.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
.+..+.|.|++||||||+++.|++.++.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg~~ 43 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGFT 43 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 35679999999999999999999998754
No 318
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.71 E-value=0.019 Score=58.08 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+..+++.|++|+||||++..||..+.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999999885
No 319
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.70 E-value=0.00051 Score=70.16 Aligned_cols=29 Identities=31% Similarity=0.253 Sum_probs=25.6
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+..|..+.|.||+|+|||||+|.|++.+.
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCccc
Confidence 34578899999999999999999999873
No 320
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.70 E-value=0.00098 Score=65.77 Aligned_cols=35 Identities=23% Similarity=0.251 Sum_probs=29.8
Q ss_pred CCccccC--CcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 187 NPFLVSW--NRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 187 ~~~~i~~--~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
-++.+.. +..+.|.||+|+|||||++.|++.+...
T Consensus 161 v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 161 IPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp SCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred CCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3456666 8899999999999999999999998643
No 321
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.70 E-value=0.00093 Score=60.01 Aligned_cols=27 Identities=30% Similarity=0.597 Sum_probs=24.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
..|.|+|++||||||+++.+++.++.+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~ 39 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAH 39 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 569999999999999999999987654
No 322
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.69 E-value=0.0075 Score=66.38 Aligned_cols=27 Identities=22% Similarity=0.460 Sum_probs=24.2
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHH
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALA 215 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA 215 (426)
+.+..|..+.|.|++|+|||||++.+.
T Consensus 645 l~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 645 VKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp EEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred EEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 567889999999999999999999853
No 323
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=96.68 E-value=0.0012 Score=50.03 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhccCchHHHHhhhh
Q 014376 342 GPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRS 398 (426)
Q Consensus 342 ~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~s~~di~~~~~~ 398 (426)
|+|+.++|.+||+.++++.. .....++..++..++|||++||+..|+.
T Consensus 1 plPd~~~R~~Il~~~l~~~~---------~~~~~dl~~la~~t~G~SGADi~~l~~e 48 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMN---------LTRGINLRKIAELMPGASGAEVKGVCTE 48 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSE---------ECTTCCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCC---------CCCccCHHHHHHHcCCCCHHHHHHHHHH
Confidence 68999999999998887642 2345789999999999999999988654
No 324
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.67 E-value=0.0077 Score=66.46 Aligned_cols=27 Identities=19% Similarity=0.379 Sum_probs=24.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHH
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALA 215 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA 215 (426)
+.+..|..+.|.|++|+|||||++.+.
T Consensus 663 l~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 663 VSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp EEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred EEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 567789999999999999999999853
No 325
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.66 E-value=0.0028 Score=58.47 Aligned_cols=28 Identities=29% Similarity=0.502 Sum_probs=24.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccc
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (426)
..+.|.||||+||||+|+.|++.++.+.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~ 36 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQ 36 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCE
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCe
Confidence 3588999999999999999999997543
No 326
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.66 E-value=0.012 Score=59.59 Aligned_cols=83 Identities=16% Similarity=0.200 Sum_probs=60.7
Q ss_pred cEEEEEechhhHHHHhhhhccCCCCChhHHHHHHHHHHhhhh--------cCCCcEEEEEEe-----CCCCcCCHHHhcc
Q 014376 268 LVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKL--------KSSPNVIILTTS-----NITAAIDIAFVDR 334 (426)
Q Consensus 268 ~~illIDEid~l~~~r~~~ls~~e~~~~~~~~~~ll~~ld~l--------~~~~~viVi~Tt-----N~~~~ld~al~~R 334 (426)
..++++||+|++...... +++ +-....++++||..++.- ....++++|+|. |..+ +-+.|++|
T Consensus 251 ~~il~~DEidki~~~~~~--~~~-D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~d-lipel~~R 326 (444)
T 1g41_A 251 NGIVFIDEIDKICKKGEY--SGA-DVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSD-LIPELQGR 326 (444)
T ss_dssp HCEEEEETGGGGSCCSSC--SSS-HHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGG-SCHHHHTT
T ss_pred CCeeeHHHHHHHhhccCC--CCC-CchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhh-cchHHhcc
Confidence 368999999999754211 111 111234778999999863 134678999887 4444 55889999
Q ss_pred cCeEEEeCCCCHHHHHHHHH
Q 014376 335 ADIKAYVGPPTLQARYEILR 354 (426)
Q Consensus 335 ~~~~i~i~~p~~~~r~~Il~ 354 (426)
|..++.++.++.++..+|+.
T Consensus 327 ~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 327 LPIRVELTALSAADFERILT 346 (444)
T ss_dssp CCEEEECCCCCHHHHHHHHH
T ss_pred cceeeeCCCCCHHHHHHHHH
Confidence 99999999999999999993
No 327
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.65 E-value=0.0011 Score=58.21 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
..+|+||+|+||||++++|+..++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 789999999999999999999885
No 328
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.65 E-value=0.0022 Score=57.65 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHH-HHHHHHHHHh
Q 014376 194 NRIVLLHGPPGTGKT-SLCKALAQKL 218 (426)
Q Consensus 194 ~~~vLL~GPpGtGKT-tLaralA~~l 218 (426)
++..++|||.|+||| .|++++.+..
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~ 45 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQ 45 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 678999999999999 8888887765
No 329
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.65 E-value=0.0012 Score=60.86 Aligned_cols=28 Identities=25% Similarity=0.586 Sum_probs=25.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 192 SWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 192 ~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
..|..|.|.||||+||||+++.|++.++
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3578899999999999999999999985
No 330
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.63 E-value=0.0012 Score=59.87 Aligned_cols=26 Identities=42% Similarity=0.653 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
+..|.|.|++||||||+++.|++ ++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~ 29 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGI 29 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCC
Confidence 46799999999999999999998 654
No 331
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.62 E-value=0.0011 Score=64.68 Aligned_cols=27 Identities=33% Similarity=0.662 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
+..++|.||+|+|||+|+..||+.++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~ 66 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPL 66 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCC
Confidence 457999999999999999999999864
No 332
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.62 E-value=0.0011 Score=59.03 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
+..|.|.|++||||||+++.|++. +..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~ 34 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYP 34 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCE
Confidence 467999999999999999999997 543
No 333
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.60 E-value=0.0058 Score=61.72 Aligned_cols=28 Identities=32% Similarity=0.367 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
.+..+++.||+|+||||++..||..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3688999999999999999999998853
No 334
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.59 E-value=0.0085 Score=54.10 Aligned_cols=25 Identities=36% Similarity=0.428 Sum_probs=18.0
Q ss_pred CcEEEEEcCCCCcHHHH-HHHHHHHh
Q 014376 194 NRIVLLHGPPGTGKTSL-CKALAQKL 218 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtL-aralA~~l 218 (426)
++.+++.+|+|+|||.. +-.+...+
T Consensus 51 ~~~~lv~~pTGsGKT~~~~~~~l~~l 76 (224)
T 1qde_A 51 GHDVLAQAQSGTGKTGTFSIAALQRI 76 (224)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 45699999999999976 33344433
No 335
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.59 E-value=0.0012 Score=65.48 Aligned_cols=28 Identities=21% Similarity=0.487 Sum_probs=25.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
.+..++|.||+|+||||+++++++.+..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 3788999999999999999999998854
No 336
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.58 E-value=0.0053 Score=60.03 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
.|..++|.|+||+|||+|+..+|....
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 388999999999999999999998864
No 337
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.58 E-value=0.0012 Score=63.55 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
.+..+.|.||+|+|||||++.|++.++
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999999885
No 338
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.58 E-value=0.0012 Score=59.09 Aligned_cols=25 Identities=40% Similarity=0.727 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
|.|+|.||+|+|||||++.|.....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4489999999999999999988763
No 339
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.58 E-value=0.0014 Score=64.14 Aligned_cols=30 Identities=30% Similarity=0.379 Sum_probs=26.2
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 190 LVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
.+..+..+.|.||||+|||||++++++.+.
T Consensus 51 ~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 51 QTGRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp GCCCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 345578999999999999999999999873
No 340
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.56 E-value=0.0012 Score=62.61 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
.+.|.||+|+|||||+++|++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~ 28 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS 28 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4899999999999999999998743
No 341
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.51 E-value=0.001 Score=68.17 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=26.7
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
+.+.. ..+.|.||+|+|||||+++|++.+..
T Consensus 25 l~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p 55 (483)
T 3euj_A 25 FDFDE-LVTTLSGGNGAGKSTTMAGFVTALIP 55 (483)
T ss_dssp EECCS-SEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred EEEcc-ceEEEECCCCCcHHHHHHHHhcCCCC
Confidence 34556 78999999999999999999998843
No 342
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=96.51 E-value=0.0091 Score=54.30 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccc
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (426)
..|.|+|..||||||+++.++. +|.+.
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~v 36 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASL 36 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcE
Confidence 3599999999999999999988 76543
No 343
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=96.50 E-value=0.038 Score=54.84 Aligned_cols=128 Identities=17% Similarity=0.234 Sum_probs=66.7
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEeccc-------cc--------cccccchH-HHHH--
Q 014376 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHS-------LF--------SKWFSESG-KLVA-- 252 (426)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~-------l~--------~~~~~e~~-~~v~-- 252 (426)
+..|..++|.|++|+|||+|+..|++..... .++..++.+-... +. ...+.+.. ..+.
T Consensus 172 igrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~----~~dv~~V~~lIGER~~EV~d~~~~~~G~VV~atadep~~~r~~~a 247 (427)
T 3l0o_A 172 IGKGQRGMIVAPPKAGKTTILKEIANGIAEN----HPDTIRIILLIDERPEEVTDIRESTNAIVIAAPFDMPPDKQVKVA 247 (427)
T ss_dssp CBTTCEEEEEECTTCCHHHHHHHHHHHHHHH----CTTSEEEEEECSCCHHHHSSSSSSCCSEEEECCTTSCHHHHHHHH
T ss_pred ccCCceEEEecCCCCChhHHHHHHHHHHhhc----CCCeEEEEEEeccCcchHHHHHHHhCCeEEEECCCCCHHHHHHHH
Confidence 4557889999999999999999999876432 1222223222210 11 11111211 1111
Q ss_pred -HHHHHHHHHHHhccCcEEEEEechhhHHHHhhh-h------ccCCCCChhHHHHHHHHHHhhhhcCCCcEEEEEEeCC
Q 014376 253 -KLFQKIQEMVEEENNLVFVLIDEVESLAAARKA-A------LSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNI 323 (426)
Q Consensus 253 -~~f~~~~~~~~~~~~~~illIDEid~l~~~r~~-~------ls~~e~~~~~~~~~~ll~~ld~l~~~~~viVi~TtN~ 323 (426)
.....+. ++.+....+++++|.+-+++.+... . +++|.+.........++..-..+...+.+..+.|.-.
T Consensus 248 ~~altiAE-yfrd~G~dVLil~DslTR~A~A~rEvs~~~Ge~~s~Gypp~~~~~~~~~~erA~~ie~~GSIT~i~tvlv 325 (427)
T 3l0o_A 248 ELTLEMAK-RLVEFNYDVVILLDSLTRLARVYNIVVPPSGKLLTGGVDPAALYKPKRFFGAARNTREGGSLTIIATALV 325 (427)
T ss_dssp HHHHHHHH-HHHHTTCEEEEEEECHHHHHHHHHHHSCCCSCCCSSSCCSSCSHHHHHHHHTCEEESSSCEEEEEEEEEC
T ss_pred HHHHHHHH-HHHHcCCCEEEecccchHHHHHHHHHHHhcCCCCCCCcCchhhcchHHHHHhhcccCCCcceeEEEEEEe
Confidence 1122232 3334567799999999988765432 2 2333444333333444443222334555666665443
No 344
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.48 E-value=0.0022 Score=64.65 Aligned_cols=27 Identities=37% Similarity=0.580 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
+..++|.||+|+||||+++++++.+..
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 567999999999999999999999853
No 345
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.47 E-value=0.0044 Score=63.78 Aligned_cols=30 Identities=7% Similarity=0.169 Sum_probs=26.1
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
+..|..++|.|+||+|||+|+..+|.....
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~ 268 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGT 268 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTT
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHH
Confidence 445889999999999999999999988753
No 346
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.46 E-value=0.0051 Score=55.12 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l 218 (426)
++..+++||.|+||||.+-.++..+
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHH
Confidence 6789999999999999998888877
No 347
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.46 E-value=0.018 Score=63.97 Aligned_cols=43 Identities=19% Similarity=0.177 Sum_probs=32.4
Q ss_pred hchhhHHHHHHHHHHHHHHHhhcCCCCccccCCcEEEEEcCCCCcHHHHHHHHHHH
Q 014376 162 IYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQK 217 (426)
Q Consensus 162 v~~~~~k~~L~~~~~~~~~~~~~g~~~~~i~~~~~vLL~GPpGtGKTtLaralA~~ 217 (426)
+|.+...+.|.+.+.. ..+ .+.+.|+||.|.||||||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~-----~d~--------~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLE-----LRP--------AKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHH-----CCS--------SCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhc-----cCC--------CeEEEEEcCCCccHHHHHHHHHHh
Confidence 6777777777766532 111 367999999999999999999864
No 348
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=96.46 E-value=0.0016 Score=50.53 Aligned_cols=49 Identities=16% Similarity=0.151 Sum_probs=41.0
Q ss_pred eCCCCHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhccCchHHHHhhhh
Q 014376 341 VGPPTLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRS 398 (426)
Q Consensus 341 i~~p~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~s~~di~~~~~~ 398 (426)
-.+|+.++|.+||+.++++.. .....++..++..++|||++||+..|+.
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~---------l~~dvdl~~LA~~T~G~SGADL~~l~~e 56 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMN---------LTRGINLRKIAELMPGASGAEVKGVCTE 56 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSE---------ECTTCCCHHHHHTCSSCCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHcCCC---------CCcccCHHHHHHHcCCCCHHHHHHHHHH
Confidence 468999999999999987642 2345689999999999999999998754
No 349
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.45 E-value=0.0019 Score=62.36 Aligned_cols=27 Identities=33% Similarity=0.544 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
+..++|.||+|+|||+|+..||+.++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~ 29 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNG 29 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTE
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCcc
Confidence 357899999999999999999998853
No 350
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.44 E-value=0.003 Score=60.96 Aligned_cols=29 Identities=31% Similarity=0.464 Sum_probs=26.0
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
...++.++|.||+|+||||++..||..+.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHH
Confidence 34578999999999999999999999985
No 351
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.44 E-value=0.0039 Score=60.51 Aligned_cols=31 Identities=29% Similarity=0.282 Sum_probs=27.3
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 190 LVSWNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
....++.+++.||+|+||||++..||..+..
T Consensus 101 ~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 101 KENRLNIFMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp CTTSCEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3566889999999999999999999998853
No 352
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.41 E-value=0.005 Score=58.89 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=24.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
+..|.|.||+|+|||||++.|++.++.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 578999999999999999999999864
No 353
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.40 E-value=0.0017 Score=58.66 Aligned_cols=28 Identities=32% Similarity=0.624 Sum_probs=24.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccc
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (426)
..+.|.|++||||||+++.|++.++.++
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~ 31 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIY 31 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCce
Confidence 4699999999999999999999987543
No 354
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.38 E-value=0.0019 Score=61.49 Aligned_cols=24 Identities=33% Similarity=0.639 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l 218 (426)
..|+|.|+|||||||+++.|++.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 569999999999999999999864
No 355
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.37 E-value=0.0034 Score=58.04 Aligned_cols=25 Identities=32% Similarity=0.390 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.++++||+|+|||.++.+++..++
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~ 133 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELS 133 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcC
Confidence 3489999999999999998887763
No 356
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.37 E-value=0.00095 Score=60.00 Aligned_cols=25 Identities=24% Similarity=0.531 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
.|.|.|++||||||+++.|++.++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 5889999999999999999999853
No 357
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.35 E-value=0.007 Score=61.40 Aligned_cols=29 Identities=28% Similarity=0.394 Sum_probs=25.3
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 192 SWNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 192 ~~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
..|..++|.|+||+|||+++..+|.....
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~ 223 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSD 223 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHH
Confidence 34889999999999999999999987743
No 358
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.34 E-value=0.0073 Score=53.57 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 014376 197 VLLHGPPGTGKTSLCKALAQK 217 (426)
Q Consensus 197 vLL~GPpGtGKTtLaralA~~ 217 (426)
++++|++|||||++|+.++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 799999999999999999865
No 359
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.32 E-value=0.0023 Score=62.08 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+..+.|.||+||||||+++.|++.+.
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35799999999999999999999885
No 360
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.30 E-value=0.004 Score=62.14 Aligned_cols=25 Identities=36% Similarity=0.728 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
..++|.||+|+|||+|+..||..++
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5689999999999999999999985
No 361
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.27 E-value=0.0012 Score=58.05 Aligned_cols=41 Identities=27% Similarity=0.302 Sum_probs=27.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEecccc
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSL 239 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~~~~l 239 (426)
+.+.|.|++|+|||||++.|++.+...- -..+.+.+++.++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g----~~~G~I~~dg~~i 43 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERG----LRVAVVKRHAHGD 43 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTT----CCEEEEEC-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcC----CceEEEEEcCccc
Confidence 4589999999999999999999985420 0135566666554
No 362
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.26 E-value=0.0019 Score=64.98 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
.+..|+|+|+|||||||+++.+++.++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~ 284 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGY 284 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 3578999999999999999999998754
No 363
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.22 E-value=0.0021 Score=58.04 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
++.++|.||+|+|||+|+..+++...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 67899999999999999999998874
No 364
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.21 E-value=0.0032 Score=61.50 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=23.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
..|+|.||+||||||+++.||+.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~ 33 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNG 33 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTE
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCC
Confidence 46999999999999999999999863
No 365
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.19 E-value=0.002 Score=67.11 Aligned_cols=29 Identities=34% Similarity=0.515 Sum_probs=26.1
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+..|..+.|.|++|||||||+++|++.++
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 34578899999999999999999999995
No 366
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.11 E-value=0.0031 Score=59.90 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
...|.|.|++||||||+++.|+ .++.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~ 100 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGA 100 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTC
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCC
Confidence 4579999999999999999999 5653
No 367
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=96.11 E-value=0.056 Score=49.41 Aligned_cols=18 Identities=39% Similarity=0.580 Sum_probs=15.3
Q ss_pred CcEEEEEcCCCCcHHHHH
Q 014376 194 NRIVLLHGPPGTGKTSLC 211 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLa 211 (426)
++.+++.+|+|+|||..+
T Consensus 66 ~~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 66 GRELLASAPTGSGKTLAF 83 (245)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEECCCCCcHHHHH
Confidence 456999999999999763
No 368
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.08 E-value=0.0062 Score=66.14 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l 218 (426)
++.+++.||+|+|||+++..+....
T Consensus 109 ~~~vii~gpTGSGKTtllp~ll~~~ 133 (773)
T 2xau_A 109 NQIMVFVGETGSGKTTQIPQFVLFD 133 (773)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5679999999999999877775543
No 369
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.03 E-value=0.011 Score=62.46 Aligned_cols=25 Identities=40% Similarity=0.537 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l 218 (426)
+..|+|.|.|||||||+++.|++.+
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999999998
No 370
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.03 E-value=0.055 Score=48.52 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=17.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHH
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQ 216 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~ 216 (426)
++.+++.+|+|+|||..+-..+-
T Consensus 51 ~~~~li~~~TGsGKT~~~~~~~~ 73 (220)
T 1t6n_A 51 GMDVLCQAKSGMGKTAVFVLATL 73 (220)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEECCCCCchhhhhhHHHH
Confidence 34599999999999986655443
No 371
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.01 E-value=0.0023 Score=70.78 Aligned_cols=40 Identities=30% Similarity=0.470 Sum_probs=32.8
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHhcccccCCCCcceEEEEe
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVN 235 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l~~~~~~~~~~~~~i~i~ 235 (426)
+.+..|..+.|.||+|+|||||++.|++.+. |..+.+.++
T Consensus 694 l~I~~GeivaIiGpNGSGKSTLLklLaGll~-------P~sG~I~~~ 733 (986)
T 2iw3_A 694 FQCSLSSRIAVIGPNGAGKSTLINVLTGELL-------PTSGEVYTH 733 (986)
T ss_dssp EEEETTCEEEECSCCCHHHHHHHHHHTTSSC-------CSEEEEEEC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-------CCceEEEEc
Confidence 5677899999999999999999999999873 444556554
No 372
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.00 E-value=0.0026 Score=64.10 Aligned_cols=28 Identities=32% Similarity=0.376 Sum_probs=23.8
Q ss_pred ccCCcE--EEEEcCCCCcHHHHHHHHHHHh
Q 014376 191 VSWNRI--VLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 191 i~~~~~--vLL~GPpGtGKTtLaralA~~l 218 (426)
+..|.. +.|.||+|+|||||+++|++..
T Consensus 37 i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 37 VSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp CC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred ecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 344777 9999999999999999999863
No 373
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.00 E-value=0.0041 Score=56.06 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=26.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccc
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (426)
..|.|.|++||||||+++.||+.++.++
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~ 34 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPL 34 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCE
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCE
Confidence 5799999999999999999999998776
No 374
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.99 E-value=0.0027 Score=61.43 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=18.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQK 217 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~ 217 (426)
+.+++.+|+|+|||..+-..+-.
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHH
Confidence 57999999999999876554443
No 375
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.97 E-value=0.0024 Score=58.64 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=24.6
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHHH
Q 014376 190 LVSWNRIVLLHGPPGTGKTSLCKALAQK 217 (426)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~ 217 (426)
....|..+.|.||+|+||||+++.|++.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 3455789999999999999999999886
No 376
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.94 E-value=0.014 Score=51.98 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l 218 (426)
+.+++.+|+|+|||.++-.++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 459999999999999888776654
No 377
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.85 E-value=0.0053 Score=54.11 Aligned_cols=25 Identities=36% Similarity=0.461 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
..+.|.|++|+|||||++.+++.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 4689999999999999999999874
No 378
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.83 E-value=0.0019 Score=57.67 Aligned_cols=30 Identities=20% Similarity=0.206 Sum_probs=24.8
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~~l 218 (426)
+.+..+..+.|.|++|+|||||++++++..
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 445567889999999999999999997654
No 379
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.82 E-value=0.0058 Score=52.27 Aligned_cols=24 Identities=42% Similarity=0.569 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l 218 (426)
...+|+||+|+|||+++.+|.-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 568999999999999999998766
No 380
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.82 E-value=0.003 Score=60.39 Aligned_cols=26 Identities=19% Similarity=0.455 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+..|.|.||+||||||+++.|++.++
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35799999999999999999999876
No 381
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.81 E-value=0.0015 Score=60.37 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 014376 197 VLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 197 vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+.|.||+|+|||||+++|+..+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 56789999999999999999984
No 382
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=95.80 E-value=0.036 Score=50.66 Aligned_cols=18 Identities=33% Similarity=0.410 Sum_probs=15.1
Q ss_pred CcEEEEEcCCCCcHHHHH
Q 014376 194 NRIVLLHGPPGTGKTSLC 211 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLa 211 (426)
++.+++.+|+|+|||..+
T Consensus 67 ~~~~li~apTGsGKT~~~ 84 (237)
T 3bor_A 67 GYDVIAQAQSGTGKTATF 84 (237)
T ss_dssp TCCEEECCCSSHHHHHHH
T ss_pred CCCEEEECCCCCcHHHHH
Confidence 455999999999999763
No 383
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.80 E-value=0.0058 Score=53.65 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
..+.|.|++|+||||++..++..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4689999999999999999999875
No 384
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.79 E-value=0.0051 Score=54.19 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQK 217 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~ 217 (426)
.|++++|.|++|+||||+|..+.+.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3789999999999999999999874
No 385
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.78 E-value=0.059 Score=46.95 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l 218 (426)
-.|+|.|++|+|||+|++.+.+.-
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998643
No 386
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=95.77 E-value=0.043 Score=48.55 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=15.5
Q ss_pred CcEEEEEcCCCCcHHHHHH
Q 014376 194 NRIVLLHGPPGTGKTSLCK 212 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLar 212 (426)
++.+++.+|+|+|||..+-
T Consensus 40 ~~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 40 GRDILARAKNGTGKSGAYL 58 (206)
T ss_dssp TCCEEEECCSSSTTHHHHH
T ss_pred CCCEEEECCCCCchHHHHH
Confidence 4569999999999996543
No 387
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.74 E-value=0.0056 Score=56.37 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+..|.|.|++|+||||+++.|++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999999983
No 388
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.73 E-value=0.0064 Score=55.37 Aligned_cols=27 Identities=37% Similarity=0.549 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
|..|.|.|++|+||||+++.|++.+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 678999999999999999999999853
No 389
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.67 E-value=0.0061 Score=54.05 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l 218 (426)
.+.|.|++|+|||||++.+++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999864
No 390
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.67 E-value=0.0035 Score=62.96 Aligned_cols=26 Identities=27% Similarity=0.301 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+..+.|.||||+|||||+++|++...
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~ 94 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGN 94 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCT
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34799999999999999999999653
No 391
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.65 E-value=0.0059 Score=53.95 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l 218 (426)
-.+.|.|++|+|||||++.+++..
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 358999999999999999999865
No 392
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.65 E-value=0.0058 Score=56.28 Aligned_cols=29 Identities=24% Similarity=0.436 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
.|..|.|.||+|+||||+++.|++.+...
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 36789999999999999999999999643
No 393
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.65 E-value=0.079 Score=48.42 Aligned_cols=18 Identities=22% Similarity=0.141 Sum_probs=15.2
Q ss_pred CcEEEEEcCCCCcHHHHH
Q 014376 194 NRIVLLHGPPGTGKTSLC 211 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLa 211 (426)
|+.+++.+|+|+|||...
T Consensus 66 g~~~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 66 GLDMVGVAQTGSGKTLSY 83 (242)
T ss_dssp TCCEEEEECTTSCHHHHH
T ss_pred CCCEEEECCCcCHHHHHH
Confidence 355999999999999764
No 394
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=95.64 E-value=0.084 Score=48.69 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=15.5
Q ss_pred CcEEEEEcCCCCcHHHHH
Q 014376 194 NRIVLLHGPPGTGKTSLC 211 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLa 211 (426)
++.+++.+|+|+|||..+
T Consensus 80 ~~~~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 80 GRDIIGLAETGSGKTGAF 97 (249)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEEcCCCCCchhHh
Confidence 466999999999999864
No 395
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.62 E-value=0.0054 Score=67.85 Aligned_cols=28 Identities=32% Similarity=0.529 Sum_probs=25.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHH
Q 014376 189 FLVSWNRIVLLHGPPGTGKTSLCKALAQ 216 (426)
Q Consensus 189 ~~i~~~~~vLL~GPpGtGKTtLaralA~ 216 (426)
+.+..|..+.|.||+|+|||||+++|++
T Consensus 456 l~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 456 LRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4466788999999999999999999995
No 396
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.62 E-value=0.0035 Score=60.14 Aligned_cols=28 Identities=32% Similarity=0.442 Sum_probs=24.7
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 192 SWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 192 ~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
..+..+.|.||||+|||||+++|++...
T Consensus 167 l~geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 167 LKGKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp HSSSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred hcCCeEEEECCCCCcHHHHHHHhccccc
Confidence 3467899999999999999999998774
No 397
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=95.60 E-value=0.068 Score=51.89 Aligned_cols=19 Identities=32% Similarity=0.462 Sum_probs=16.0
Q ss_pred cEEEEEcCCCCcHHHHHHH
Q 014376 195 RIVLLHGPPGTGKTSLCKA 213 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLara 213 (426)
+.+++.+|+|+|||..+-.
T Consensus 45 ~~~lv~a~TGsGKT~~~~~ 63 (395)
T 3pey_A 45 RNMIAQSQSGTGKTAAFSL 63 (395)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 6699999999999986543
No 398
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=95.58 E-value=0.063 Score=51.19 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=15.3
Q ss_pred CcEEEEEcCCCCcHHHHH
Q 014376 194 NRIVLLHGPPGTGKTSLC 211 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLa 211 (426)
++.+++.+|+|||||...
T Consensus 131 ~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 131 PQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCccHHH
Confidence 367999999999999753
No 399
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.58 E-value=0.066 Score=45.61 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l 218 (426)
..|++.|++|+|||||++.+.+.-
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998754
No 400
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.57 E-value=0.1 Score=45.38 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l 218 (426)
-.|+|.|++|+|||||++.+.+.-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 359999999999999999998754
No 401
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.56 E-value=0.007 Score=62.67 Aligned_cols=28 Identities=29% Similarity=0.485 Sum_probs=24.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
+..|+|.|.||+||||+++.|++.++..
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~ 62 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWI 62 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 4679999999999999999999998643
No 402
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.55 E-value=0.011 Score=62.84 Aligned_cols=23 Identities=39% Similarity=0.847 Sum_probs=17.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQK 217 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~ 217 (426)
...||+||||||||+++-.+...
T Consensus 206 ~~~lI~GPPGTGKT~ti~~~I~~ 228 (646)
T 4b3f_X 206 ELAIIHGPPGTGKTTTVVEIILQ 228 (646)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999765444433
No 403
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=95.54 E-value=0.2 Score=45.31 Aligned_cols=19 Identities=32% Similarity=0.277 Sum_probs=15.7
Q ss_pred CcEEEEEcCCCCcHHHHHH
Q 014376 194 NRIVLLHGPPGTGKTSLCK 212 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLar 212 (426)
++.+++.+|+|+|||..+-
T Consensus 62 ~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 62 GKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEEeCCCCcHHHHHH
Confidence 4569999999999998543
No 404
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.53 E-value=0.0084 Score=54.76 Aligned_cols=27 Identities=37% Similarity=0.656 Sum_probs=25.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
|..|.|.|++|+||||+++.+++.++.
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 678999999999999999999999964
No 405
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=95.51 E-value=0.043 Score=49.57 Aligned_cols=19 Identities=26% Similarity=0.240 Sum_probs=15.7
Q ss_pred CcEEEEEcCCCCcHHHHHH
Q 014376 194 NRIVLLHGPPGTGKTSLCK 212 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLar 212 (426)
++.+++.+|+|+|||..+-
T Consensus 57 ~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 57 GIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEECCCCChHHHHHH
Confidence 4569999999999997543
No 406
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=95.51 E-value=0.086 Score=47.28 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=15.1
Q ss_pred CcEEEEEcCCCCcHHHHH
Q 014376 194 NRIVLLHGPPGTGKTSLC 211 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLa 211 (426)
++.+++.+|+|+|||..+
T Consensus 41 ~~~~lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 41 GESMVGQSQTGTGKTHAY 58 (219)
T ss_dssp TCCEEEECCSSHHHHHHH
T ss_pred CCCEEEECCCCChHHHHH
Confidence 355999999999999863
No 407
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.49 E-value=0.0083 Score=55.57 Aligned_cols=27 Identities=19% Similarity=0.502 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
|..|.|.|++|+||||+++.|++.+..
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 578999999999999999999999854
No 408
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.44 E-value=0.0091 Score=54.77 Aligned_cols=29 Identities=34% Similarity=0.524 Sum_probs=26.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIRF 222 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~~ 222 (426)
+..|.|.|++||||||+++.||+.++.++
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~ 42 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHF 42 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEE
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcE
Confidence 35799999999999999999999998765
No 409
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.40 E-value=0.017 Score=52.61 Aligned_cols=27 Identities=15% Similarity=0.089 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
.|...+++||.|+||||.+-.++..+.
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~ 53 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQ 53 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 367788999999999999888887763
No 410
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.38 E-value=0.0095 Score=60.55 Aligned_cols=24 Identities=42% Similarity=0.661 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
.++|.|+||||||+++.+++..+.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~ 70 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALI 70 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 699999999999999999999884
No 411
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.37 E-value=0.013 Score=51.22 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l 218 (426)
...+++.|++|+|||||+..+.+..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3469999999999999999998754
No 412
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.36 E-value=0.0064 Score=59.88 Aligned_cols=26 Identities=38% Similarity=0.561 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
|..+.|.||||+|||||+++|++...
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCEEEEECCCCccHHHHHHHHhcccc
Confidence 67899999999999999999998764
No 413
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.35 E-value=0.0042 Score=58.09 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l 218 (426)
+..|.|.|++|+||||+++.|++.+
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5679999999999999999999988
No 414
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.31 E-value=0.0088 Score=59.00 Aligned_cols=23 Identities=43% Similarity=0.778 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l 218 (426)
..+|+||+|+||||+..+|+..+
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999998665
No 415
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.30 E-value=0.011 Score=53.87 Aligned_cols=27 Identities=22% Similarity=0.486 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
|..|.|.|++|+||||.++.|++.+..
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 577999999999999999999999853
No 416
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=95.29 E-value=0.13 Score=50.38 Aligned_cols=21 Identities=33% Similarity=0.358 Sum_probs=16.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHH
Q 014376 194 NRIVLLHGPPGTGKTSLCKAL 214 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaral 214 (426)
++.+++.+|+|+|||..+-..
T Consensus 58 ~~~~li~a~TGsGKT~~~~~~ 78 (400)
T 1s2m_A 58 GRDILARAKNGTGKTAAFVIP 78 (400)
T ss_dssp TCCEEEECCTTSCHHHHHHHH
T ss_pred CCCEEEECCCCcHHHHHHHHH
Confidence 355999999999999865443
No 417
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.27 E-value=0.012 Score=54.01 Aligned_cols=27 Identities=33% Similarity=0.458 Sum_probs=24.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
|..|.|.|++|+||||+++.+++.++.
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 578999999999999999999999864
No 418
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=95.26 E-value=0.018 Score=57.28 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=33.4
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHh-----cccccCCCCcceEEEEec
Q 014376 191 VSWNRIVLLHGPPGTGKTSLCKALAQKL-----SIRFSSRYPQCQLVEVNA 236 (426)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l-----~~~~~~~~~~~~~i~i~~ 236 (426)
+..+..+.|.|+||+|||||.++|.+.- +.++....|+.+.+.+++
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~ 67 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 67 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence 3457789999999999999999999832 223334456666666654
No 419
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.25 E-value=0.0032 Score=60.77 Aligned_cols=30 Identities=27% Similarity=0.439 Sum_probs=24.3
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 190 LVSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
.+..|+.+.|.||||+|||||+++|++...
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC---
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhccccc
Confidence 445688999999999999999999988763
No 420
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.25 E-value=0.0096 Score=61.37 Aligned_cols=27 Identities=15% Similarity=0.113 Sum_probs=24.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
+..|+|.|.+||||||++++||+.++.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 567999999999999999999999973
No 421
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.24 E-value=0.012 Score=53.05 Aligned_cols=25 Identities=40% Similarity=0.521 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
...+|+||+|+||||++.+|.-.+.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 5789999999999999999988775
No 422
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=95.18 E-value=0.053 Score=50.51 Aligned_cols=19 Identities=32% Similarity=0.340 Sum_probs=15.4
Q ss_pred CcEEEEEcCCCCcHHHHHH
Q 014376 194 NRIVLLHGPPGTGKTSLCK 212 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLar 212 (426)
++.+++.+|+|+|||..+-
T Consensus 91 ~~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 91 GRDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp TCCCEECCCTTSCHHHHHH
T ss_pred CCcEEEEccCCCCchHHHH
Confidence 3558999999999997643
No 423
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.17 E-value=0.009 Score=57.31 Aligned_cols=26 Identities=35% Similarity=0.505 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
.+..+.|.||||+|||||+++|+ ...
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 46789999999999999999999 653
No 424
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.14 E-value=0.013 Score=56.06 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
.++.+.+.|++|+||||++..+|..+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999999999985
No 425
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=95.13 E-value=0.012 Score=59.13 Aligned_cols=28 Identities=25% Similarity=0.500 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
.+..++|+||+|+|||+++++|+..++.
T Consensus 25 ~~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 3678999999999999999999998754
No 426
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=95.13 E-value=0.011 Score=58.24 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l 218 (426)
.++|+||+|+|||+++++|+...
T Consensus 28 ~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHHhc
Confidence 78999999999999999998744
No 427
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.12 E-value=0.013 Score=49.36 Aligned_cols=23 Identities=39% Similarity=0.577 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l 218 (426)
.+++.|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998754
No 428
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=95.06 E-value=0.1 Score=50.81 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=17.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHH
Q 014376 194 NRIVLLHGPPGTGKTSLCKALA 215 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA 215 (426)
++.+++.+|+|+|||..+-..+
T Consensus 45 ~~~~lv~a~TGsGKT~~~~~~~ 66 (391)
T 1xti_A 45 GMDVLCQAKSGMGKTAVFVLAT 66 (391)
T ss_dssp TCCEEEECSSCSSHHHHHHHHH
T ss_pred CCcEEEECCCCCcHHHHHHHHH
Confidence 4569999999999998654433
No 429
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.02 E-value=0.014 Score=56.83 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=24.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 192 SWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 192 ~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
..+..+.|.|+||+||||+++.+++.+.
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3467899999999999999999998873
No 430
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.01 E-value=0.011 Score=50.77 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQK 217 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~ 217 (426)
..+.|.|++|+|||||++.+++.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999864
No 431
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.00 E-value=0.013 Score=59.70 Aligned_cols=28 Identities=29% Similarity=0.515 Sum_probs=24.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSIR 221 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~~ 221 (426)
+..|+|.|.||+||||+++.|++.++..
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~ 66 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFI 66 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 4579999999999999999999998643
No 432
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.96 E-value=0.012 Score=51.04 Aligned_cols=25 Identities=40% Similarity=0.569 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l 218 (426)
+..+.|.|+||+|||||++.+++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4569999999999999999998753
No 433
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.93 E-value=0.016 Score=56.74 Aligned_cols=25 Identities=36% Similarity=0.603 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l 218 (426)
+..+.|.|+||+|||||++++++.+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999999876
No 434
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=94.93 E-value=0.11 Score=50.82 Aligned_cols=18 Identities=33% Similarity=0.410 Sum_probs=15.3
Q ss_pred CcEEEEEcCCCCcHHHHH
Q 014376 194 NRIVLLHGPPGTGKTSLC 211 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLa 211 (426)
++.+++.+|+|+|||..+
T Consensus 77 ~~~~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 77 GYDVIAQAQSGTGKTATF 94 (414)
T ss_dssp TCCEEECCCSCSSSHHHH
T ss_pred CCCEEEECCCCCcccHHH
Confidence 455999999999999874
No 435
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.91 E-value=0.015 Score=49.14 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l 218 (426)
.+++.|++|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 436
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.90 E-value=0.015 Score=60.96 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+..|+|.|++||||||++++|++.++
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 46799999999999999999999986
No 437
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=94.88 E-value=0.016 Score=57.00 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=15.6
Q ss_pred CcEEEEEcCCCCcHHHHH
Q 014376 194 NRIVLLHGPPGTGKTSLC 211 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLa 211 (426)
++.+++.+|+|+|||..+
T Consensus 64 ~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 64 PQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCchHHHHH
Confidence 366999999999999874
No 438
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.87 E-value=0.03 Score=56.39 Aligned_cols=28 Identities=29% Similarity=0.267 Sum_probs=25.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 193 WNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 193 ~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
.++.+++.|++|+||||++..+|..+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5788999999999999999999999853
No 439
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.84 E-value=0.091 Score=53.64 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=24.8
Q ss_pred ccCCcEEEEEcCCCCcHHHH-HHHHHHHhc
Q 014376 191 VSWNRIVLLHGPPGTGKTSL-CKALAQKLS 219 (426)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtL-aralA~~l~ 219 (426)
+..|..++|.|++|+|||+| +..|++..+
T Consensus 159 igrGQR~~Ifg~~g~GKT~Lal~~I~~~~~ 188 (502)
T 2qe7_A 159 IGRGQRELIIGDRQTGKTTIAIDTIINQKG 188 (502)
T ss_dssp CBTTCBCEEEECSSSCHHHHHHHHHHGGGS
T ss_pred cccCCEEEEECCCCCCchHHHHHHHHHhhc
Confidence 56678899999999999999 678888764
No 440
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.81 E-value=0.017 Score=48.59 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l 218 (426)
.|++.|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 59999999999999999988643
No 441
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.80 E-value=0.01 Score=51.91 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 014376 196 IVLLHGPPGTGKTSLCKALAQK 217 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~ 217 (426)
.++|.|++|+|||||++.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
No 442
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=94.79 E-value=0.2 Score=45.29 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=15.3
Q ss_pred CcEEEEEcCCCCcHHHHH
Q 014376 194 NRIVLLHGPPGTGKTSLC 211 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLa 211 (426)
++.+++.+|+|+|||..+
T Consensus 61 ~~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 61 GLDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp TCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCcHHHHH
Confidence 456999999999999763
No 443
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.78 E-value=0.08 Score=54.15 Aligned_cols=29 Identities=21% Similarity=0.338 Sum_probs=24.6
Q ss_pred ccCCcEEEEEcCCCCcHHHH-HHHHHHHhc
Q 014376 191 VSWNRIVLLHGPPGTGKTSL-CKALAQKLS 219 (426)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtL-aralA~~l~ 219 (426)
+..|..++|.|++|+|||+| +.+|++..+
T Consensus 172 igrGQR~~I~g~~g~GKT~Lal~~I~~~~~ 201 (515)
T 2r9v_A 172 IGRGQRELIIGDRQTGKTAIAIDTIINQKG 201 (515)
T ss_dssp EETTCBEEEEEETTSSHHHHHHHHHHTTTT
T ss_pred cccCCEEEEEcCCCCCccHHHHHHHHHhhc
Confidence 55677899999999999999 678888764
No 444
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.77 E-value=0.016 Score=48.60 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l 218 (426)
.+++.|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998753
No 445
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.74 E-value=0.02 Score=51.24 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l 218 (426)
..++|.|++|+|||||++.+.+..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 469999999999999999998865
No 446
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=94.73 E-value=0.14 Score=50.26 Aligned_cols=20 Identities=35% Similarity=0.464 Sum_probs=16.1
Q ss_pred CcEEEEEcCCCCcHHHHHHH
Q 014376 194 NRIVLLHGPPGTGKTSLCKA 213 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLara 213 (426)
++.+++.+|+|+|||..+-.
T Consensus 74 ~~~~lv~a~TGsGKT~~~~~ 93 (410)
T 2j0s_A 74 GRDVIAQSQSGTGKTATFSI 93 (410)
T ss_dssp TCCEEEECCTTSSHHHHHHH
T ss_pred CCCEEEECCCCCCchHHHHH
Confidence 45699999999999976543
No 447
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.72 E-value=0.015 Score=50.54 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQK 217 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~ 217 (426)
..++|.|++|+|||||++.+++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999874
No 448
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.71 E-value=0.019 Score=48.42 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l 218 (426)
..|++.|++|+|||||++.+.+.-
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 359999999999999999998753
No 449
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.69 E-value=0.017 Score=55.31 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
++.+++.|++|+||||++..+|..+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 78899999999999999999999885
No 450
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.67 E-value=0.02 Score=48.56 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l 218 (426)
.|++.|++|+|||||++.+.+.-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 59999999999999999998754
No 451
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.65 E-value=0.02 Score=48.47 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l 218 (426)
.|++.|++|+|||||++.+.+.-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998654
No 452
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=94.63 E-value=0.12 Score=52.27 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=15.7
Q ss_pred CcEEEEEcCCCCcHHHHH
Q 014376 194 NRIVLLHGPPGTGKTSLC 211 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLa 211 (426)
++.+++.||+|+|||...
T Consensus 131 ~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 131 PQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CCEEEEECCSSSSHHHHH
T ss_pred CCcEEEEcCCCCchhHHH
Confidence 477999999999999763
No 453
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.63 E-value=0.017 Score=60.84 Aligned_cols=26 Identities=42% Similarity=0.644 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
++.+++.|||||||||++..+...+.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999998887764
No 454
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.61 E-value=0.019 Score=60.74 Aligned_cols=24 Identities=42% Similarity=0.776 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l 218 (426)
..+++.||||||||+++..++..+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999888777665
No 455
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.61 E-value=0.02 Score=48.96 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l 218 (426)
-.|++.|++|+|||||++.+.+.-
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 359999999999999999998643
No 456
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.58 E-value=0.014 Score=56.30 Aligned_cols=24 Identities=33% Similarity=0.528 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l 218 (426)
..++|.|++|+|||||++.+++..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 468999999999999999999875
No 457
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.58 E-value=0.015 Score=56.11 Aligned_cols=23 Identities=26% Similarity=0.593 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l 218 (426)
..+|+||+|+|||+|+++|.-.+
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHHTS
T ss_pred cEEEECCCCCcHHHHHHHHHHHh
Confidence 89999999999999999999765
No 458
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.57 E-value=0.022 Score=52.37 Aligned_cols=24 Identities=33% Similarity=0.351 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
.+++.|+||+||||++-.+|..+.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL 31 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 489999999999999999998884
No 459
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=94.57 E-value=0.021 Score=55.61 Aligned_cols=24 Identities=42% Similarity=0.569 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l 218 (426)
...+|+||+|+|||+++.||.-.+
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 568999999999999999986655
No 460
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.57 E-value=0.022 Score=48.38 Aligned_cols=24 Identities=33% Similarity=0.296 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l 218 (426)
-.|++.|++|+|||||++.+.+.-
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 359999999999999999998653
No 461
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.56 E-value=0.021 Score=48.94 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l 218 (426)
..|++.|++|+|||||++.+.+..
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 459999999999999999998753
No 462
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.55 E-value=0.02 Score=48.54 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 014376 196 IVLLHGPPGTGKTSLCKALAQK 217 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~ 217 (426)
.|++.|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 463
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=94.53 E-value=0.12 Score=50.22 Aligned_cols=17 Identities=41% Similarity=0.483 Sum_probs=14.6
Q ss_pred cEEEEEcCCCCcHHHHH
Q 014376 195 RIVLLHGPPGTGKTSLC 211 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLa 211 (426)
+.+++.+|+|+|||..+
T Consensus 59 ~~~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 59 HDVLAQAQSGTGKTGTF 75 (394)
T ss_dssp CCEEECCCSSHHHHHHH
T ss_pred CCEEEECCCCChHHHHH
Confidence 45899999999999764
No 464
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.52 E-value=0.022 Score=48.84 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQK 217 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~ 217 (426)
...|++.|++|+|||||++.+.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456999999999999999999764
No 465
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.48 E-value=0.022 Score=51.15 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
..++|.|++|+|||||+..+++.+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4699999999999999999998863
No 466
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.46 E-value=0.023 Score=47.94 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 014376 196 IVLLHGPPGTGKTSLCKALAQK 217 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~ 217 (426)
.+++.|++|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 467
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=94.46 E-value=0.12 Score=48.94 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=18.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQK 217 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~ 217 (426)
++.+++.+|+|+|||..+-..+-.
T Consensus 31 ~~~~lv~~~TGsGKT~~~~~~~~~ 54 (337)
T 2z0m_A 31 GKNVVVRAKTGSGKTAAYAIPILE 54 (337)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHh
Confidence 356999999999999876555443
No 468
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.45 E-value=0.02 Score=48.79 Aligned_cols=23 Identities=52% Similarity=0.694 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l 218 (426)
.|+|.|++|+|||||++.+.+.-
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 59999999999999999987543
No 469
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.43 E-value=0.02 Score=48.52 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQK 217 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~ 217 (426)
-.|++.|++|+|||||++.+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999863
No 470
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=94.42 E-value=0.092 Score=53.66 Aligned_cols=30 Identities=23% Similarity=0.302 Sum_probs=25.4
Q ss_pred cccCCcEEEEEcCCCCcHHHH-HHHHHHHhc
Q 014376 190 LVSWNRIVLLHGPPGTGKTSL-CKALAQKLS 219 (426)
Q Consensus 190 ~i~~~~~vLL~GPpGtGKTtL-aralA~~l~ 219 (426)
.+..|..++|.|++|+|||+| +..|++..+
T Consensus 159 PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~ 189 (507)
T 1fx0_A 159 PVGRGQRELIIGDRQTGKTAVATDTILNQQG 189 (507)
T ss_dssp CCBTTCBCBEEESSSSSHHHHHHHHHHTCCT
T ss_pred ccccCCEEEEecCCCCCccHHHHHHHHHhhc
Confidence 366788899999999999999 678888764
No 471
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.42 E-value=0.024 Score=47.93 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQK 217 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~ 217 (426)
-.|++.|++|+|||||++.+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 472
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.41 E-value=0.026 Score=50.89 Aligned_cols=26 Identities=27% Similarity=0.630 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+..|.|-|+.||||||.++.|++.+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 45689999999999999999999984
No 473
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=94.40 E-value=0.024 Score=43.90 Aligned_cols=45 Identities=13% Similarity=0.072 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHHHHHHhCccccCCCCCCCchhhHHHHhhccCchHHHHhhhh
Q 014376 345 TLQARYEILRSCLQELIRTGIISNFQDCDQSMLPNFSILKEKLSNPDIQEADRS 398 (426)
Q Consensus 345 ~~~~r~~Il~~~l~~l~~~~~i~~~~~~~~~~l~~l~~~~~~~s~~di~~~~~~ 398 (426)
+.++|.+||+.++++.. .....++..++..++|||++||+..|+.
T Consensus 2 d~~~R~~Il~~~~~~~~---------~~~dvdl~~lA~~t~G~SGADl~~l~~e 46 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMS---------VERGIRWELISRLCPNSTGAELRSVCTE 46 (88)
T ss_dssp CSSHHHHHHHHHHTTSC---------BCSCCCHHHHHHTCSSCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCC---------CCCccCHHHHHHHcCCCcHHHHHHHHHH
Confidence 45789999998887642 2346789999999999999999998764
No 474
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.39 E-value=0.018 Score=58.10 Aligned_cols=26 Identities=35% Similarity=0.592 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
++.+++.|++|+||||++..||..+.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999999874
No 475
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.38 E-value=0.03 Score=47.52 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQK 217 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~ 217 (426)
...|++.|++|+|||||++.+.+.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 356999999999999999999764
No 476
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=94.37 E-value=0.12 Score=52.63 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=23.3
Q ss_pred ccCCcEEEEEcCCCCcHHHH-HHHHHHHh
Q 014376 191 VSWNRIVLLHGPPGTGKTSL-CKALAQKL 218 (426)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtL-aralA~~l 218 (426)
+..|..++|.|++|+|||++ ..+|++..
T Consensus 159 igrGQR~~Ifg~~g~GKT~l~l~~I~n~~ 187 (513)
T 3oaa_A 159 IGRGQRELIIGDRQTGKTALAIDAIINQR 187 (513)
T ss_dssp CBTTCBCEEEESSSSSHHHHHHHHHHTTS
T ss_pred cccCCEEEeecCCCCCcchHHHHHHHhhc
Confidence 55677899999999999999 57887754
No 477
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.31 E-value=0.025 Score=48.96 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQK 217 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~ 217 (426)
-.|+|.|++|+|||||++.+.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999999999864
No 478
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.31 E-value=0.024 Score=58.93 Aligned_cols=27 Identities=33% Similarity=0.469 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
+..|+|.|++|+||||+++.|++.++.
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 567999999999999999999998853
No 479
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.31 E-value=0.026 Score=47.60 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 014376 197 VLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 197 vLL~GPpGtGKTtLaralA~~l 218 (426)
+++.|++|+|||+|++.+.+.-
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 8999999999999999997643
No 480
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.28 E-value=0.026 Score=55.92 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 194 NRIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLaralA~~l 218 (426)
+.++++.||+|+|||++++.++..+
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHH
Confidence 5679999999999999999998876
No 481
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.28 E-value=0.023 Score=48.21 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 014376 196 IVLLHGPPGTGKTSLCKALAQ 216 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~ 216 (426)
.|++.|++|+|||||++.+.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999964
No 482
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.26 E-value=0.025 Score=48.89 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 014376 196 IVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~~l 218 (426)
.|++.|++|+|||||++.+.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998654
No 483
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.25 E-value=0.025 Score=48.40 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQK 217 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~ 217 (426)
..|++.|++|+|||||++.+.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999876
No 484
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=94.25 E-value=0.15 Score=51.72 Aligned_cols=30 Identities=10% Similarity=0.231 Sum_probs=26.0
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 014376 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLSI 220 (426)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l~~ 220 (426)
+..|..++|.|++|+|||+|+..||+....
T Consensus 149 igrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~ 178 (469)
T 2c61_A 149 LVRGQKLPIFSASGLPHNEIALQIARQASV 178 (469)
T ss_dssp CBTTCBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 556777899999999999999999998754
No 485
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.23 E-value=0.023 Score=48.53 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQK 217 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~ 217 (426)
-.|++.|++|+|||||++.+.+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999854
No 486
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.23 E-value=0.021 Score=48.34 Aligned_cols=21 Identities=43% Similarity=0.774 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 014376 196 IVLLHGPPGTGKTSLCKALAQ 216 (426)
Q Consensus 196 ~vLL~GPpGtGKTtLaralA~ 216 (426)
.++|.|++|+|||||++.+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 489999999999999999864
No 487
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.23 E-value=0.025 Score=49.27 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l 218 (426)
-.|++.|++|+|||||++++.+.-
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 459999999999999999998763
No 488
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.21 E-value=0.022 Score=48.75 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQK 217 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~ 217 (426)
-.|++.|++|+|||+|++.+.+.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 35999999999999999999864
No 489
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=94.17 E-value=0.047 Score=58.37 Aligned_cols=19 Identities=37% Similarity=0.536 Sum_probs=16.9
Q ss_pred CcEEEEEcCCCCcHHHHHH
Q 014376 194 NRIVLLHGPPGTGKTSLCK 212 (426)
Q Consensus 194 ~~~vLL~GPpGtGKTtLar 212 (426)
++.+++.||+|+|||+.+-
T Consensus 40 ~~~~lv~apTGsGKT~~~~ 58 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAE 58 (702)
T ss_dssp CSCEEEECSSHHHHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHH
Confidence 6779999999999999873
No 490
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.16 E-value=0.028 Score=48.86 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l 218 (426)
-.|++.|++|+|||||++.+++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 359999999999999999998753
No 491
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.14 E-value=0.029 Score=49.04 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l 218 (426)
-.|+|.|++|+|||||++.+.+.-
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 359999999999999999998743
No 492
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=94.14 E-value=0.14 Score=52.31 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=24.6
Q ss_pred ccCCcEEEEEcCCCCcHHHH-HHHHHHHhc
Q 014376 191 VSWNRIVLLHGPPGTGKTSL-CKALAQKLS 219 (426)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtL-aralA~~l~ 219 (426)
+..|..++|.|++|+|||+| +..|++...
T Consensus 159 igrGQR~~I~g~~g~GKT~Lal~~I~~q~~ 188 (510)
T 2ck3_A 159 IGRGQRELIIGDRQTGKTSIAIDTIINQKR 188 (510)
T ss_dssp CBTTCBCEEEESTTSSHHHHHHHHHHHTHH
T ss_pred cccCCEEEEecCCCCCchHHHHHHHHHHHh
Confidence 55677899999999999999 678888775
No 493
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.11 E-value=0.03 Score=48.23 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l 218 (426)
..|+|.|++|+|||||++.+.+.-
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 459999999999999999998643
No 494
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=94.10 E-value=0.087 Score=49.41 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 014376 197 VLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 197 vLL~GPpGtGKTtLaralA~~l 218 (426)
.+|.+|+|+|||..+-+++...
T Consensus 131 ~ll~~~tGsGKT~~~~~~~~~~ 152 (282)
T 1rif_A 131 RILNLPTSAGRSLIQALLARYY 152 (282)
T ss_dssp EEECCCTTSCHHHHHHHHHHHH
T ss_pred eEEEcCCCCCcHHHHHHHHHHH
Confidence 5779999999999987776653
No 495
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.10 E-value=0.025 Score=49.12 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQK 217 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~ 217 (426)
-.+++.|++|+|||||++.+.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999875
No 496
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.09 E-value=0.031 Score=47.98 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQK 217 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~ 217 (426)
-.|++.|++|+|||||++.+.+.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35999999999999999999865
No 497
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=94.08 E-value=0.18 Score=50.89 Aligned_cols=29 Identities=10% Similarity=0.190 Sum_probs=25.3
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+..|..++|.|++|+|||+|+..|++...
T Consensus 148 igrGQr~~Ifgg~G~GKt~L~~~Ia~~~~ 176 (465)
T 3vr4_D 148 LVRGQKLPVFSGSGLPHKELAAQIARQAT 176 (465)
T ss_dssp CBTTCBCCEEECTTSCHHHHHHHHHHHCB
T ss_pred cccCCEEEEeCCCCcChHHHHHHHHHHHH
Confidence 55677799999999999999999998764
No 498
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.05 E-value=0.026 Score=48.75 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKL 218 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l 218 (426)
-.|++.|++|+|||||++.+.+.-
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 459999999999999999998653
No 499
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.04 E-value=0.027 Score=49.04 Aligned_cols=25 Identities=28% Similarity=0.297 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 195 RIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 195 ~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
-.|+|.|++|+|||+|++.+.+...
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3599999999999999998887654
No 500
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=94.02 E-value=0.23 Score=51.52 Aligned_cols=29 Identities=28% Similarity=0.345 Sum_probs=25.3
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 014376 191 VSWNRIVLLHGPPGTGKTSLCKALAQKLS 219 (426)
Q Consensus 191 i~~~~~vLL~GPpGtGKTtLaralA~~l~ 219 (426)
+..|..++|.|++|+|||+|+..||+...
T Consensus 229 igrGqr~~Ifgg~g~GKT~L~~~ia~~~~ 257 (600)
T 3vr4_A 229 VTKGGAAAVPGPFGAGKTVVQHQIAKWSD 257 (600)
T ss_dssp CBTTCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred ccCCCEEeeecCCCccHHHHHHHHHhccC
Confidence 55678899999999999999999998753
Done!