BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014377
         (426 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1PQ2|A Chain A, Crystal Structure Of Human Drug Metabolizing Cytochrome
           P450 2c8
 pdb|1PQ2|B Chain B, Crystal Structure Of Human Drug Metabolizing Cytochrome
           P450 2c8
 pdb|2NNH|A Chain A, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
 pdb|2NNH|B Chain B, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
 pdb|2NNI|A Chain A, Cyp2c8dh Complexed With Montelukast
 pdb|2NNJ|A Chain A, Cyp2c8dh Complexed With Felodipine
 pdb|2VN0|A Chain A, Cyp2c8dh Complexed With Troglitazone
          Length = 476

 Score = 30.4 bits (67), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 23/127 (18%)

Query: 143 LDATGFSRCLVQYDKPYNPGYQVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELK-E 201
           +D     +    + K Y P + V +G+   V  H ++  K   +D       N  E    
Sbjct: 27  IDVKDICKSFTNFSKVYGPVFTVYFGMNPIVVFHGYEAVKEALID-------NGEEFSGR 79

Query: 202 ANSKIPTFLYAMPFSSNRIFLEETSLVARPGVPMKDIQERMVARLKHLGIKVRSIE---- 257
            NS I          S RI  +   +++  G   K+I+   +  L++ G+  RSIE    
Sbjct: 80  GNSPI----------SQRI-TKGLGIISSNGKRWKEIRRFSLTTLRNFGMGKRSIEDRVQ 128

Query: 258 EDEHCVI 264
           E+ HC++
Sbjct: 129 EEAHCLV 135


>pdb|3CIA|A Chain A, Crystal Structure Of Cold-Aminopeptidase From Colwellia
           Psychrerythraea
 pdb|3CIA|B Chain B, Crystal Structure Of Cold-Aminopeptidase From Colwellia
           Psychrerythraea
 pdb|3CIA|C Chain C, Crystal Structure Of Cold-Aminopeptidase From Colwellia
           Psychrerythraea
 pdb|3CIA|D Chain D, Crystal Structure Of Cold-Aminopeptidase From Colwellia
           Psychrerythraea
          Length = 605

 Score = 30.0 bits (66), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 284 AGMVHPSTGYMVARTLAAAPIVANAIVRSLSSDRSISGHKLSAEVWKDLW 333
            GM +P   ++    +A    + N I   L+   S SG+ ++ E W+DLW
Sbjct: 273 GGMENPRLSFITPTVVAGDKSLVNLIAHELA--HSWSGNLVTNESWRDLW 320


>pdb|3R31|A Chain A, Crystal Structure Of Betaine Aldehyde Dehydrogenase From
           Agrobacterium Tumefaciens
 pdb|3R31|B Chain B, Crystal Structure Of Betaine Aldehyde Dehydrogenase From
           Agrobacterium Tumefaciens
          Length = 517

 Score = 30.0 bits (66), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 9/53 (16%)

Query: 287 VHPSTGYMVARTLAAAPIVANAIVRSLSSDRSISGHKLSAEVWKDLWPIERRR 339
           + P+TG M+A+  AA P    AIV     +R+I+  K + + W  + P+ R R
Sbjct: 35  IFPATGEMIAKLHAATP----AIV-----ERAIASAKRAQKEWAAMSPMARGR 78


>pdb|2Q0K|A Chain A, Oxidized Thioredoxin Reductase From Helicobacter Pylori In
           Complex With Nadp+
 pdb|2Q0K|B Chain B, Oxidized Thioredoxin Reductase From Helicobacter Pylori In
           Complex With Nadp+
 pdb|2Q0L|A Chain A, Helicobacter Pylori Thioredoxin Reductase Reduced By
           Sodium Dithionite In Complex With Nadp+
 pdb|2Q0L|B Chain B, Helicobacter Pylori Thioredoxin Reductase Reduced By
           Sodium Dithionite In Complex With Nadp+
 pdb|3ISH|A Chain A, Crystal Structure Of Helicobacter Pylori Thioredoxin
           Reductase
 pdb|3ISH|B Chain B, Crystal Structure Of Helicobacter Pylori Thioredoxin
           Reductase
 pdb|3ISH|C Chain C, Crystal Structure Of Helicobacter Pylori Thioredoxin
           Reductase
          Length = 311

 Score = 28.5 bits (62), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 103 QKCITNGVKFHQAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFS 149
           ++C   G+K     V +V  ++S  +++  DG T +A  V+ ATG S
Sbjct: 67  EQCFRFGLKHEMTAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGS 113


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.138    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,216,019
Number of Sequences: 62578
Number of extensions: 500574
Number of successful extensions: 1108
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1107
Number of HSP's gapped (non-prelim): 7
length of query: 426
length of database: 14,973,337
effective HSP length: 102
effective length of query: 324
effective length of database: 8,590,381
effective search space: 2783283444
effective search space used: 2783283444
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)