Query 014377
Match_columns 426
No_of_seqs 262 out of 3512
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 04:32:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014377.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014377hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02463 lycopene beta cyclase 100.0 1.7E-69 3.7E-74 517.7 45.2 425 2-426 21-447 (447)
2 PLN02697 lycopene epsilon cycl 100.0 3.3E-62 7.2E-67 473.5 44.5 415 5-424 104-529 (529)
3 TIGR01790 carotene-cycl lycope 100.0 2.3E-51 5E-56 394.0 41.6 387 11-406 1-388 (388)
4 PF05834 Lycopene_cycl: Lycope 100.0 1.5E-51 3.3E-56 390.3 34.7 365 11-402 1-372 (374)
5 TIGR01789 lycopene_cycl lycope 100.0 8.1E-48 1.7E-52 362.9 29.9 357 11-417 1-369 (370)
6 TIGR02023 BchP-ChlP geranylger 100.0 1.1E-35 2.5E-40 284.4 36.0 367 10-414 1-386 (388)
7 PLN00093 geranylgeranyl diphos 100.0 2.8E-35 6E-40 283.7 34.2 314 7-340 37-377 (450)
8 TIGR02028 ChlP geranylgeranyl 100.0 3.3E-34 7.2E-39 274.1 33.9 334 10-367 1-360 (398)
9 COG0644 FixC Dehydrogenases (f 100.0 2.9E-34 6.2E-39 274.7 33.1 322 8-344 2-336 (396)
10 COG0654 UbiH 2-polyprenyl-6-me 100.0 2.2E-33 4.8E-38 268.2 27.5 304 9-330 2-333 (387)
11 PRK08013 oxidoreductase; Provi 100.0 3.8E-32 8.2E-37 261.2 29.9 303 8-329 2-339 (400)
12 PRK08773 2-octaprenyl-3-methyl 100.0 7.4E-32 1.6E-36 259.0 30.7 307 4-329 1-339 (392)
13 PRK06184 hypothetical protein; 100.0 7.6E-32 1.6E-36 266.4 28.6 305 8-331 2-336 (502)
14 PRK07494 2-octaprenyl-6-methox 100.0 1E-31 2.3E-36 257.8 27.7 308 4-330 2-335 (388)
15 PRK05714 2-octaprenyl-3-methyl 100.0 1.4E-31 3.1E-36 258.2 27.9 303 9-330 2-343 (405)
16 PRK08850 2-octaprenyl-6-methox 100.0 4.1E-31 8.9E-36 254.7 30.9 304 7-329 2-339 (405)
17 PRK10015 oxidoreductase; Provi 100.0 1.6E-31 3.5E-36 257.4 28.0 357 8-370 4-395 (429)
18 PRK07364 2-octaprenyl-6-methox 100.0 2E-31 4.4E-36 258.2 28.7 307 4-329 13-351 (415)
19 PRK07190 hypothetical protein; 100.0 3.8E-31 8.3E-36 258.1 30.6 301 7-331 3-331 (487)
20 TIGR02032 GG-red-SF geranylger 100.0 3.8E-31 8.3E-36 244.7 29.1 283 10-309 1-295 (295)
21 TIGR01989 COQ6 Ubiquinone bios 100.0 5.3E-31 1.1E-35 255.7 30.6 305 10-330 1-391 (437)
22 PRK08244 hypothetical protein; 100.0 7.4E-31 1.6E-35 259.0 31.7 302 9-330 2-327 (493)
23 PRK08020 ubiF 2-octaprenyl-3-m 100.0 3.6E-31 7.9E-36 254.4 28.6 301 6-329 2-338 (391)
24 PRK11445 putative oxidoreducta 100.0 5.6E-31 1.2E-35 248.3 29.1 294 9-330 1-314 (351)
25 PRK08243 4-hydroxybenzoate 3-m 100.0 1E-30 2.2E-35 250.8 31.3 302 9-330 2-333 (392)
26 PRK06834 hypothetical protein; 100.0 1.5E-30 3.2E-35 254.3 32.8 300 8-331 2-321 (488)
27 PRK08294 phenol 2-monooxygenas 100.0 9.9E-31 2.1E-35 262.3 31.9 308 6-330 29-395 (634)
28 PRK06617 2-octaprenyl-6-methox 100.0 6E-31 1.3E-35 250.6 28.8 293 10-330 2-321 (374)
29 PRK07333 2-octaprenyl-6-methox 100.0 5E-31 1.1E-35 254.6 27.6 301 9-328 1-336 (403)
30 TIGR01988 Ubi-OHases Ubiquinon 100.0 7.9E-31 1.7E-35 251.9 28.7 301 11-330 1-334 (385)
31 PRK09126 hypothetical protein; 100.0 6.5E-31 1.4E-35 252.8 28.0 304 8-330 2-338 (392)
32 PF01494 FAD_binding_3: FAD bi 100.0 7.3E-32 1.6E-36 256.2 20.2 304 9-330 1-346 (356)
33 PRK07045 putative monooxygenas 100.0 1.2E-30 2.7E-35 250.2 28.5 305 6-330 2-341 (388)
34 PRK06183 mhpA 3-(3-hydroxyphen 100.0 9.7E-31 2.1E-35 260.3 28.4 304 7-331 8-342 (538)
35 TIGR01984 UbiH 2-polyprenyl-6- 100.0 1.1E-30 2.4E-35 250.4 27.5 301 11-330 1-331 (382)
36 PRK08849 2-octaprenyl-3-methyl 100.0 3.8E-30 8.1E-35 246.2 30.2 300 9-330 3-332 (384)
37 PRK07608 ubiquinone biosynthes 100.0 2.1E-30 4.6E-35 248.9 28.5 304 8-330 4-337 (388)
38 PRK07588 hypothetical protein; 100.0 2.6E-30 5.6E-35 248.3 28.5 303 10-330 1-332 (391)
39 PRK06185 hypothetical protein; 100.0 6.5E-30 1.4E-34 247.0 30.5 307 5-329 2-339 (407)
40 PRK10157 putative oxidoreducta 100.0 2.5E-30 5.4E-35 249.5 26.7 350 8-370 4-394 (428)
41 PRK08132 FAD-dependent oxidore 100.0 1.4E-29 2.9E-34 252.8 30.8 307 7-331 21-355 (547)
42 PRK06996 hypothetical protein; 100.0 7E-30 1.5E-34 245.3 27.5 302 6-329 8-342 (398)
43 PRK05732 2-octaprenyl-6-methox 100.0 1E-29 2.2E-34 244.8 28.1 304 8-331 2-341 (395)
44 PRK06753 hypothetical protein; 100.0 7.8E-30 1.7E-34 243.6 25.7 295 10-331 1-322 (373)
45 TIGR02360 pbenz_hydroxyl 4-hyd 100.0 4.5E-29 9.7E-34 238.6 30.4 299 9-330 2-333 (390)
46 PRK06847 hypothetical protein; 100.0 6.5E-29 1.4E-33 237.5 30.4 302 7-330 2-334 (375)
47 PRK08163 salicylate hydroxylas 100.0 8.5E-30 1.8E-34 245.4 24.4 300 7-330 2-339 (396)
48 PRK05868 hypothetical protein; 100.0 2.9E-29 6.3E-34 238.2 27.5 302 10-331 2-336 (372)
49 PRK06475 salicylate hydroxylas 100.0 2.3E-29 5E-34 242.1 27.1 303 10-330 3-343 (400)
50 PRK06126 hypothetical protein; 100.0 5E-29 1.1E-33 248.9 30.6 308 5-331 3-359 (545)
51 PTZ00367 squalene epoxidase; P 100.0 4.4E-29 9.5E-34 245.4 29.4 286 8-312 32-374 (567)
52 PRK07538 hypothetical protein; 100.0 8.3E-29 1.8E-33 239.2 30.5 300 10-330 1-349 (413)
53 PLN02985 squalene monooxygenas 100.0 1.6E-28 3.6E-33 240.4 29.9 320 6-345 40-399 (514)
54 PRK07236 hypothetical protein; 100.0 2E-28 4.3E-33 234.5 28.7 320 7-330 4-358 (386)
55 TIGR03219 salicylate_mono sali 100.0 5.2E-27 1.1E-31 226.9 26.3 309 11-330 2-356 (414)
56 KOG2614 Kynurenine 3-monooxyge 100.0 4.8E-27 1E-31 212.2 19.6 299 9-314 2-327 (420)
57 PLN02927 antheraxanthin epoxid 100.0 7.9E-26 1.7E-30 223.4 29.2 307 7-330 79-429 (668)
58 PF04820 Trp_halogenase: Trypt 99.9 6.6E-25 1.4E-29 212.1 21.8 304 11-345 1-383 (454)
59 PRK08255 salicylyl-CoA 5-hydro 99.9 9.2E-23 2E-27 209.6 21.0 286 11-331 2-323 (765)
60 KOG1298 Squalene monooxygenase 99.9 1.3E-21 2.7E-26 174.0 20.9 286 5-311 41-362 (509)
61 KOG3855 Monooxygenase involved 99.8 8.4E-20 1.8E-24 164.2 19.5 297 9-321 36-416 (481)
62 PRK11259 solA N-methyltryptoph 99.7 3.9E-14 8.6E-19 135.6 26.2 61 90-151 144-205 (376)
63 PF01266 DAO: FAD dependent ox 99.7 1.9E-15 4.1E-20 143.6 16.6 84 90-175 142-228 (358)
64 PRK13369 glycerol-3-phosphate 99.7 8.4E-14 1.8E-18 137.6 28.2 205 91-314 151-379 (502)
65 COG2081 Predicted flavoprotein 99.6 3.3E-15 7.2E-20 135.7 15.0 140 7-151 1-168 (408)
66 PRK12266 glpD glycerol-3-phosp 99.6 2.4E-13 5.2E-18 134.2 27.8 205 91-314 151-380 (508)
67 PRK01747 mnmC bifunctional tRN 99.6 1E-13 2.3E-18 141.5 25.0 61 90-151 403-464 (662)
68 KOG2415 Electron transfer flav 99.6 5.3E-14 1.2E-18 127.0 17.4 313 8-333 75-446 (621)
69 TIGR01373 soxB sarcosine oxida 99.6 3E-13 6.4E-18 130.8 23.9 195 90-310 178-383 (407)
70 TIGR01377 soxA_mon sarcosine o 99.6 9.3E-13 2E-17 126.3 25.9 66 90-156 140-207 (380)
71 PRK04176 ribulose-1,5-biphosph 99.6 1.3E-14 2.9E-19 129.7 10.9 137 8-155 24-178 (257)
72 PRK12409 D-amino acid dehydrog 99.6 4.3E-13 9.2E-18 129.9 22.0 61 91-151 193-259 (410)
73 TIGR03329 Phn_aa_oxid putative 99.6 2.1E-13 4.6E-18 133.5 19.8 60 90-151 178-238 (460)
74 TIGR00292 thiazole biosynthesi 99.6 4.2E-14 9E-19 126.0 12.1 137 8-155 20-175 (254)
75 PF03486 HI0933_like: HI0933-l 99.5 6.5E-14 1.4E-18 132.9 13.9 138 10-151 1-167 (409)
76 PRK00711 D-amino acid dehydrog 99.5 1.7E-12 3.6E-17 126.1 24.1 60 91-151 197-258 (416)
77 PRK05192 tRNA uridine 5-carbox 99.5 1.7E-13 3.6E-18 134.1 16.6 143 7-150 2-157 (618)
78 COG0665 DadA Glycine/D-amino a 99.5 6.9E-13 1.5E-17 127.5 20.5 196 90-310 151-365 (387)
79 PF01946 Thi4: Thi4 family; PD 99.5 5.4E-14 1.2E-18 117.7 10.6 141 8-155 16-170 (230)
80 PRK11728 hydroxyglutarate oxid 99.5 9.2E-13 2E-17 126.6 20.7 122 90-225 144-269 (393)
81 PLN02464 glycerol-3-phosphate 99.5 1.4E-11 3E-16 124.2 28.1 161 90-267 227-405 (627)
82 COG0578 GlpA Glycerol-3-phosph 99.5 1.5E-10 3.2E-15 111.3 32.0 206 91-314 160-388 (532)
83 COG1635 THI4 Ribulose 1,5-bisp 99.5 2.4E-13 5.3E-18 112.9 10.8 138 8-154 29-182 (262)
84 PRK11101 glpA sn-glycerol-3-ph 99.5 1.3E-11 2.8E-16 123.0 24.3 202 90-313 144-371 (546)
85 COG0579 Predicted dehydrogenas 99.4 5.2E-12 1.1E-16 118.8 16.0 146 7-152 1-213 (429)
86 PF13738 Pyr_redox_3: Pyridine 99.4 1.2E-12 2.5E-17 114.0 9.9 132 13-151 1-139 (203)
87 KOG2820 FAD-dependent oxidored 99.4 6.8E-11 1.5E-15 104.6 19.9 145 5-150 3-212 (399)
88 PF08491 SE: Squalene epoxidas 99.4 1.7E-11 3.7E-16 107.6 16.2 157 139-312 2-167 (276)
89 TIGR03364 HpnW_proposed FAD de 99.3 2.4E-10 5.2E-15 108.9 22.6 57 90-151 140-198 (365)
90 TIGR00136 gidA glucose-inhibit 99.3 2.7E-11 5.9E-16 118.5 16.1 140 10-150 1-154 (617)
91 PF01134 GIDA: Glucose inhibit 99.3 1.9E-11 4.1E-16 113.7 14.0 136 11-148 1-150 (392)
92 COG0492 TrxB Thioredoxin reduc 99.3 4.8E-11 1.1E-15 108.8 14.3 117 8-154 2-119 (305)
93 PRK07233 hypothetical protein; 99.3 1.2E-09 2.7E-14 106.7 24.8 55 96-150 199-254 (434)
94 TIGR01292 TRX_reduct thioredox 99.3 8.9E-11 1.9E-15 108.7 15.9 113 10-151 1-113 (300)
95 PLN02172 flavin-containing mon 99.3 4.2E-11 9E-16 116.3 13.9 141 6-151 7-174 (461)
96 PF12831 FAD_oxidored: FAD dep 99.2 4.8E-12 1E-16 122.5 4.5 138 11-151 1-151 (428)
97 PRK15317 alkyl hydroperoxide r 99.2 3E-10 6.5E-15 112.8 16.0 114 7-151 209-323 (517)
98 TIGR03143 AhpF_homolog putativ 99.2 4.4E-10 9.4E-15 112.4 16.5 115 7-152 2-116 (555)
99 PTZ00383 malate:quinone oxidor 99.2 9.6E-11 2.1E-15 114.3 10.1 61 90-151 206-274 (497)
100 COG2072 TrkA Predicted flavopr 99.2 4.3E-10 9.3E-15 108.8 14.5 151 5-172 4-163 (443)
101 TIGR02730 carot_isom carotene 99.2 1.6E-08 3.4E-13 100.3 25.7 61 95-155 229-291 (493)
102 PLN02612 phytoene desaturase 99.2 1.9E-08 4.1E-13 100.8 26.1 52 97-148 310-364 (567)
103 TIGR03140 AhpF alkyl hydropero 99.2 5E-10 1.1E-14 111.1 14.9 113 7-150 210-323 (515)
104 PRK05257 malate:quinone oxidor 99.2 2.4E-10 5.1E-15 112.0 12.3 84 91-174 179-274 (494)
105 TIGR00562 proto_IX_ox protopor 99.2 2.5E-08 5.5E-13 98.2 26.8 40 110-149 238-278 (462)
106 TIGR00275 flavoprotein, HI0933 99.2 4E-10 8.7E-15 108.2 13.5 133 13-151 1-161 (400)
107 PLN02661 Putative thiazole syn 99.2 5.9E-10 1.3E-14 102.2 13.3 133 7-151 90-245 (357)
108 KOG1399 Flavin-containing mono 99.2 3.7E-10 8E-15 107.8 12.4 139 6-150 3-153 (448)
109 KOG2853 Possible oxidoreductas 99.1 6.6E-09 1.4E-13 92.2 18.7 62 90-151 238-321 (509)
110 TIGR01320 mal_quin_oxido malat 99.1 4.4E-10 9.6E-15 110.0 12.5 86 90-175 173-269 (483)
111 PRK13339 malate:quinone oxidor 99.1 5.7E-10 1.2E-14 108.5 13.0 84 91-174 180-275 (497)
112 PRK12416 protoporphyrinogen ox 99.1 3.1E-08 6.7E-13 97.6 24.8 38 110-147 239-277 (463)
113 PRK05976 dihydrolipoamide dehy 99.1 3.8E-10 8.2E-15 111.1 11.3 140 6-151 1-155 (472)
114 PRK08274 tricarballylate dehyd 99.1 1.4E-09 3.1E-14 107.0 14.7 146 6-151 1-193 (466)
115 PRK07804 L-aspartate oxidase; 99.1 1.1E-09 2.5E-14 109.0 13.7 147 7-153 14-213 (541)
116 PRK06116 glutathione reductase 99.1 5E-10 1.1E-14 109.7 10.4 135 7-151 2-144 (450)
117 PRK05249 soluble pyridine nucl 99.1 1.1E-09 2.4E-14 107.6 12.5 138 7-151 3-150 (461)
118 TIGR02734 crtI_fam phytoene de 99.1 8E-08 1.7E-12 95.6 25.7 58 95-152 219-278 (502)
119 TIGR01424 gluta_reduc_2 glutat 99.1 6.3E-10 1.4E-14 108.6 10.3 134 9-151 2-143 (446)
120 PRK06481 fumarate reductase fl 99.1 2.2E-09 4.9E-14 106.2 14.2 145 7-151 59-252 (506)
121 PRK11883 protoporphyrinogen ox 99.1 7.9E-08 1.7E-12 94.5 25.1 40 111-150 235-275 (451)
122 TIGR03197 MnmC_Cterm tRNA U-34 99.0 1.1E-08 2.4E-13 98.0 17.7 62 90-152 130-192 (381)
123 PRK10262 thioredoxin reductase 99.0 7.8E-09 1.7E-13 96.6 15.8 116 6-151 3-118 (321)
124 PRK06370 mercuric reductase; V 99.0 1.2E-09 2.6E-14 107.4 10.4 136 5-152 1-147 (463)
125 PRK06467 dihydrolipoamide dehy 99.0 1.8E-09 4E-14 106.0 11.7 137 7-151 2-149 (471)
126 TIGR00551 nadB L-aspartate oxi 99.0 2.6E-09 5.6E-14 105.4 12.0 145 9-154 2-193 (488)
127 PRK14694 putative mercuric red 99.0 4.3E-09 9.4E-14 103.4 13.4 141 5-152 2-154 (468)
128 PRK06327 dihydrolipoamide dehy 99.0 3E-09 6.4E-14 104.8 12.2 140 7-151 2-158 (475)
129 PRK06175 L-aspartate oxidase; 99.0 4.7E-09 1E-13 101.7 13.4 143 8-151 3-190 (433)
130 PF13454 NAD_binding_9: FAD-NA 99.0 5.7E-09 1.2E-13 86.3 11.9 131 13-148 1-155 (156)
131 PRK08401 L-aspartate oxidase; 99.0 4.5E-09 9.7E-14 103.0 13.1 145 10-154 2-179 (466)
132 PRK06416 dihydrolipoamide dehy 99.0 7.4E-09 1.6E-13 101.9 14.5 136 8-151 3-147 (462)
133 PRK05945 sdhA succinate dehydr 99.0 4.5E-09 9.8E-14 105.6 13.2 58 95-152 135-199 (575)
134 PLN02507 glutathione reductase 99.0 3.9E-09 8.4E-14 104.2 12.3 137 8-151 24-180 (499)
135 PF00890 FAD_binding_2: FAD bi 99.0 3.8E-09 8.3E-14 102.6 11.7 59 93-151 139-204 (417)
136 KOG2852 Possible oxidoreductas 99.0 2E-08 4.4E-13 87.2 14.5 145 7-151 8-209 (380)
137 PF00743 FMO-like: Flavin-bind 99.0 4.1E-09 8.9E-14 103.9 11.8 133 11-151 3-151 (531)
138 PTZ00058 glutathione reductase 99.0 3E-09 6.6E-14 105.6 10.9 47 7-53 46-92 (561)
139 TIGR01421 gluta_reduc_1 glutat 99.0 6.3E-09 1.4E-13 101.6 12.8 132 9-151 2-142 (450)
140 PRK06115 dihydrolipoamide dehy 99.0 3.8E-09 8.3E-14 103.6 11.2 134 9-150 3-148 (466)
141 PRK08010 pyridine nucleotide-d 99.0 6.5E-09 1.4E-13 101.6 12.7 122 8-152 2-133 (441)
142 TIGR01812 sdhA_frdA_Gneg succi 99.0 7E-09 1.5E-13 104.5 13.3 60 95-154 129-195 (566)
143 TIGR01813 flavo_cyto_c flavocy 99.0 8.5E-09 1.8E-13 100.8 13.0 141 11-151 1-193 (439)
144 KOG2844 Dimethylglycine dehydr 99.0 1.8E-08 3.9E-13 97.0 14.6 62 90-152 182-245 (856)
145 TIGR02731 phytoene_desat phyto 98.9 3.3E-07 7.1E-12 90.0 24.2 34 11-44 1-34 (453)
146 PRK09231 fumarate reductase fl 98.9 1E-08 2.2E-13 103.0 13.3 59 95-153 133-199 (582)
147 PRK06854 adenylylsulfate reduc 98.9 2.8E-08 6E-13 100.4 16.3 143 8-151 10-196 (608)
148 PRK05335 tRNA (uracil-5-)-meth 98.9 7.4E-09 1.6E-13 97.5 11.2 110 10-121 3-126 (436)
149 PRK07251 pyridine nucleotide-d 98.9 6E-09 1.3E-13 101.7 10.7 119 8-152 2-132 (438)
150 PLN02487 zeta-carotene desatur 98.9 2.4E-06 5.3E-11 84.9 28.9 36 9-44 75-110 (569)
151 COG3380 Predicted NAD/FAD-depe 98.9 6.7E-09 1.4E-13 89.5 9.3 134 10-148 2-158 (331)
152 PRK07818 dihydrolipoamide dehy 98.9 8.6E-09 1.9E-13 101.3 11.4 136 8-151 3-148 (466)
153 COG1249 Lpd Pyruvate/2-oxoglut 98.9 1.2E-08 2.6E-13 97.9 11.5 141 6-153 1-150 (454)
154 PRK07573 sdhA succinate dehydr 98.9 2.5E-08 5.4E-13 101.1 14.2 55 98-152 173-234 (640)
155 TIGR00137 gid_trmFO tRNA:m(5)U 98.9 2.1E-08 4.5E-13 95.2 12.5 110 10-121 1-124 (433)
156 PRK06452 sdhA succinate dehydr 98.9 2.2E-08 4.8E-13 100.3 13.5 145 8-152 4-200 (566)
157 TIGR01350 lipoamide_DH dihydro 98.9 1.1E-08 2.4E-13 100.7 11.1 135 9-151 1-144 (461)
158 PRK07208 hypothetical protein; 98.9 1.4E-06 3E-11 86.3 25.9 39 6-44 1-39 (479)
159 COG1232 HemY Protoporphyrinoge 98.9 7.4E-07 1.6E-11 85.0 22.5 34 11-44 2-37 (444)
160 PRK09078 sdhA succinate dehydr 98.9 3.9E-08 8.4E-13 99.2 14.7 58 95-152 149-214 (598)
161 PRK06069 sdhA succinate dehydr 98.9 2E-08 4.4E-13 101.1 12.6 148 6-153 2-203 (577)
162 TIGR01176 fum_red_Fp fumarate 98.9 2.8E-08 6.1E-13 99.7 13.4 144 9-152 3-197 (580)
163 COG1233 Phytoene dehydrogenase 98.9 3.1E-08 6.7E-13 97.5 13.5 54 95-148 224-279 (487)
164 PRK13748 putative mercuric red 98.9 1.2E-08 2.5E-13 103.0 10.6 133 8-152 97-246 (561)
165 PRK07121 hypothetical protein; 98.9 3.3E-08 7.2E-13 97.9 13.6 58 94-151 176-240 (492)
166 TIGR02732 zeta_caro_desat caro 98.9 1.9E-06 4.2E-11 84.6 25.6 34 11-44 1-34 (474)
167 PRK09897 hypothetical protein; 98.9 5.5E-08 1.2E-12 95.6 14.6 139 10-149 2-165 (534)
168 TIGR02053 MerA mercuric reduct 98.9 1.2E-08 2.7E-13 100.3 10.2 132 10-152 1-142 (463)
169 PRK07845 flavoprotein disulfid 98.8 3E-08 6.5E-13 97.4 12.7 139 10-151 2-152 (466)
170 PTZ00139 Succinate dehydrogena 98.8 3.5E-08 7.5E-13 99.7 13.3 58 95-152 166-231 (617)
171 PRK07057 sdhA succinate dehydr 98.8 4.3E-08 9.4E-13 98.7 13.8 58 95-152 148-213 (591)
172 PLN02546 glutathione reductase 98.8 2.8E-08 6.2E-13 98.7 12.3 135 8-152 78-230 (558)
173 PRK08205 sdhA succinate dehydr 98.8 4.3E-08 9.2E-13 98.8 13.7 59 94-152 139-208 (583)
174 PLN00128 Succinate dehydrogena 98.8 4.9E-08 1.1E-12 98.7 14.1 59 94-152 186-252 (635)
175 PRK08071 L-aspartate oxidase; 98.8 2.1E-08 4.6E-13 99.3 11.1 142 9-152 3-192 (510)
176 PRK07803 sdhA succinate dehydr 98.8 5.1E-08 1.1E-12 98.8 13.8 38 7-44 6-43 (626)
177 PTZ00363 rab-GDP dissociation 98.8 1.2E-07 2.5E-12 91.5 15.5 55 96-150 233-290 (443)
178 PRK07512 L-aspartate oxidase; 98.8 2.7E-08 5.9E-13 98.6 11.5 58 94-151 135-198 (513)
179 PRK08275 putative oxidoreducta 98.8 5.3E-08 1.2E-12 97.6 13.6 145 8-152 8-202 (554)
180 COG0445 GidA Flavin-dependent 98.8 5.5E-09 1.2E-13 98.7 5.9 142 7-149 2-157 (621)
181 PRK06292 dihydrolipoamide dehy 98.8 1.8E-08 4E-13 99.0 9.7 35 8-42 2-36 (460)
182 PF07992 Pyr_redox_2: Pyridine 98.8 2.4E-09 5.2E-14 92.9 3.1 112 11-150 1-122 (201)
183 PRK08958 sdhA succinate dehydr 98.8 7.7E-08 1.7E-12 96.7 14.2 59 94-152 142-208 (588)
184 PLN02268 probable polyamine ox 98.8 4.5E-06 9.7E-11 81.6 26.0 42 108-149 209-251 (435)
185 PF13434 K_oxygenase: L-lysine 98.8 3.2E-09 7E-14 99.1 3.4 142 9-150 2-159 (341)
186 PRK06912 acoL dihydrolipoamide 98.8 4.7E-08 1E-12 95.9 11.6 135 11-151 2-145 (458)
187 PRK06263 sdhA succinate dehydr 98.8 5.4E-08 1.2E-12 97.4 12.2 58 95-152 134-199 (543)
188 PF00070 Pyr_redox: Pyridine n 98.8 1.2E-07 2.6E-12 68.8 10.8 79 11-134 1-80 (80)
189 PRK05329 anaerobic glycerol-3- 98.8 1.1E-06 2.3E-11 84.3 19.7 56 94-149 258-317 (422)
190 PRK12839 hypothetical protein; 98.8 1.4E-07 2.9E-12 94.6 13.9 41 4-44 3-43 (572)
191 PRK08626 fumarate reductase fl 98.7 1.4E-07 3.1E-12 95.8 14.0 58 95-152 158-222 (657)
192 PRK09077 L-aspartate oxidase; 98.7 1.7E-07 3.8E-12 93.5 14.3 60 95-154 138-211 (536)
193 PRK06134 putative FAD-binding 98.7 1.6E-07 3.5E-12 94.5 13.9 57 95-151 217-279 (581)
194 PLN02815 L-aspartate oxidase 98.7 8.8E-08 1.9E-12 96.0 11.9 147 5-152 25-224 (594)
195 PRK14727 putative mercuric red 98.7 7.8E-08 1.7E-12 94.8 11.0 37 7-43 14-50 (479)
196 PRK12842 putative succinate de 98.7 1.9E-07 4.2E-12 94.0 14.0 39 6-44 6-44 (574)
197 PTZ00052 thioredoxin reductase 98.7 7.8E-08 1.7E-12 95.1 10.8 34 8-41 4-37 (499)
198 TIGR01438 TGR thioredoxin and 98.7 1.1E-07 2.4E-12 93.5 11.5 136 9-151 2-156 (484)
199 PTZ00318 NADH dehydrogenase-li 98.7 1.9E-07 4E-12 90.7 12.9 111 7-151 8-126 (424)
200 TIGR01423 trypano_reduc trypan 98.7 1.6E-07 3.5E-12 92.3 12.4 138 8-151 2-164 (486)
201 PRK08641 sdhA succinate dehydr 98.7 2.7E-07 5.8E-12 93.0 14.2 37 8-44 2-38 (589)
202 PF06039 Mqo: Malate:quinone o 98.7 9E-08 1.9E-12 89.6 9.6 61 92-152 178-246 (488)
203 PRK07395 L-aspartate oxidase; 98.7 1E-07 2.2E-12 95.2 10.3 145 6-151 6-198 (553)
204 PRK12844 3-ketosteroid-delta-1 98.7 2.8E-07 6.1E-12 92.3 13.5 38 7-44 4-41 (557)
205 TIGR03378 glycerol3P_GlpB glyc 98.7 4.8E-07 1E-11 85.6 14.3 60 92-151 260-324 (419)
206 TIGR02352 thiamin_ThiO glycine 98.7 1.3E-06 2.8E-11 82.3 16.7 191 90-310 132-334 (337)
207 TIGR03169 Nterm_to_SelD pyridi 98.6 2.4E-07 5.2E-12 88.3 11.5 106 11-152 1-109 (364)
208 PRK12835 3-ketosteroid-delta-1 98.6 3.8E-07 8.2E-12 91.8 12.9 39 6-44 8-46 (584)
209 COG1231 Monoamine oxidase [Ami 98.6 2.5E-07 5.4E-12 86.3 10.7 38 7-44 5-42 (450)
210 PRK07846 mycothione reductase; 98.6 1.3E-07 2.9E-12 92.3 9.2 132 9-152 1-142 (451)
211 PRK12834 putative FAD-binding 98.6 8.5E-07 1.8E-11 88.9 15.2 36 7-42 2-37 (549)
212 PRK07843 3-ketosteroid-delta-1 98.6 1.6E-06 3.5E-11 87.0 16.9 38 7-44 5-42 (557)
213 PRK12845 3-ketosteroid-delta-1 98.6 4.8E-07 1E-11 90.5 13.1 38 6-44 13-50 (564)
214 COG2509 Uncharacterized FAD-de 98.6 3.4E-06 7.4E-11 78.6 17.1 87 93-179 171-264 (486)
215 PTZ00153 lipoamide dehydrogena 98.6 3E-07 6.5E-12 92.8 11.2 46 9-54 116-163 (659)
216 PRK04965 NADH:flavorubredoxin 98.6 6.1E-07 1.3E-11 85.9 12.6 98 10-151 142-240 (377)
217 PF13450 NAD_binding_8: NAD(P) 98.6 6E-08 1.3E-12 67.5 4.1 31 14-44 1-31 (68)
218 TIGR01372 soxA sarcosine oxida 98.6 1E-06 2.2E-11 94.0 14.9 110 8-151 162-287 (985)
219 PRK12843 putative FAD-binding 98.6 9.3E-07 2E-11 89.1 13.8 57 96-152 222-284 (578)
220 PRK09754 phenylpropionate diox 98.6 8.7E-07 1.9E-11 85.3 13.1 108 9-151 3-113 (396)
221 PRK09564 coenzyme A disulfide 98.6 6.2E-07 1.3E-11 87.9 12.1 110 11-152 2-117 (444)
222 PRK12779 putative bifunctional 98.5 3.6E-07 7.7E-12 96.2 10.1 98 8-149 305-403 (944)
223 PRK13800 putative oxidoreducta 98.5 1.1E-06 2.5E-11 92.8 14.0 37 7-43 11-47 (897)
224 TIGR01811 sdhA_Bsu succinate d 98.5 8.3E-07 1.8E-11 89.6 12.4 31 12-42 1-31 (603)
225 TIGR02485 CobZ_N-term precorri 98.5 1.1E-06 2.5E-11 85.6 13.1 59 94-152 122-185 (432)
226 KOG0042 Glycerol-3-phosphate d 98.5 3.2E-07 6.9E-12 86.6 8.6 38 7-44 65-102 (680)
227 PF00732 GMC_oxred_N: GMC oxid 98.5 4.5E-07 9.8E-12 83.8 9.7 35 10-44 1-36 (296)
228 COG3573 Predicted oxidoreducta 98.5 2E-06 4.4E-11 76.6 13.0 38 7-44 3-40 (552)
229 PRK12831 putative oxidoreducta 98.5 2.4E-07 5.3E-12 90.7 8.1 100 7-149 138-239 (464)
230 PRK09754 phenylpropionate diox 98.5 1.2E-06 2.6E-11 84.4 12.5 97 10-151 145-242 (396)
231 TIGR03452 mycothione_red mycot 98.5 4.2E-07 9E-12 88.9 9.3 131 9-152 2-145 (452)
232 PRK12837 3-ketosteroid-delta-1 98.5 3.9E-06 8.4E-11 83.5 16.2 37 7-44 5-41 (513)
233 COG3075 GlpB Anaerobic glycero 98.5 1.1E-06 2.3E-11 78.2 10.5 56 93-148 256-315 (421)
234 COG3634 AhpF Alkyl hydroperoxi 98.5 2.6E-07 5.7E-12 82.5 6.8 112 7-149 209-324 (520)
235 KOG2665 Predicted FAD-dependen 98.5 4.5E-07 9.8E-12 80.0 7.9 63 90-152 191-259 (453)
236 PRK13977 myosin-cross-reactive 98.5 3.1E-06 6.7E-11 82.9 14.5 37 8-44 21-61 (576)
237 PRK09853 putative selenate red 98.5 9.1E-07 2E-11 92.1 10.9 97 8-150 538-635 (1019)
238 PTZ00306 NADH-dependent fumara 98.5 1.9E-06 4.1E-11 93.4 13.3 38 7-44 407-444 (1167)
239 KOG0404 Thioredoxin reductase 98.4 2.6E-06 5.7E-11 71.5 10.8 119 8-151 7-125 (322)
240 PRK05249 soluble pyridine nucl 98.4 3E-06 6.5E-11 83.4 13.3 98 10-152 176-274 (461)
241 TIGR02061 aprA adenosine phosp 98.4 7.6E-06 1.6E-10 82.3 16.1 33 11-43 1-37 (614)
242 TIGR01350 lipoamide_DH dihydro 98.4 3E-06 6.5E-11 83.5 13.0 99 10-153 171-272 (461)
243 PRK13512 coenzyme A disulfide 98.4 1.9E-06 4E-11 84.1 11.3 110 11-151 3-118 (438)
244 COG1053 SdhA Succinate dehydro 98.4 7E-07 1.5E-11 88.4 8.1 40 5-44 2-41 (562)
245 TIGR03315 Se_ygfK putative sel 98.4 1.3E-06 2.9E-11 91.3 10.1 36 8-43 536-571 (1012)
246 PRK04965 NADH:flavorubredoxin 98.4 5.6E-06 1.2E-10 79.2 13.6 106 10-151 3-112 (377)
247 PRK06416 dihydrolipoamide dehy 98.4 4.3E-06 9.3E-11 82.4 12.9 98 10-152 173-274 (462)
248 PRK14989 nitrite reductase sub 98.3 4.4E-06 9.5E-11 87.2 12.1 107 10-152 4-115 (847)
249 KOG2311 NAD/FAD-utilizing prot 98.3 1.8E-06 3.8E-11 80.5 8.1 141 7-149 26-185 (679)
250 COG0029 NadB Aspartate oxidase 98.3 2.4E-06 5.2E-11 80.5 9.0 143 11-154 9-200 (518)
251 PRK06116 glutathione reductase 98.3 7.2E-06 1.6E-10 80.4 12.9 98 10-152 168-267 (450)
252 KOG3923 D-aspartate oxidase [A 98.3 2.8E-05 6.1E-10 68.4 14.8 69 92-175 148-216 (342)
253 TIGR02374 nitri_red_nirB nitri 98.3 5.3E-06 1.2E-10 86.5 12.0 106 12-152 1-110 (785)
254 PLN02852 ferredoxin-NADP+ redu 98.3 2.6E-06 5.6E-11 83.0 9.0 38 7-44 24-63 (491)
255 TIGR01424 gluta_reduc_2 glutat 98.3 1.1E-05 2.4E-10 79.0 13.3 98 10-152 167-265 (446)
256 COG1252 Ndh NADH dehydrogenase 98.3 5.9E-06 1.3E-10 77.8 10.7 110 8-153 2-114 (405)
257 PRK11749 dihydropyrimidine deh 98.3 2.1E-06 4.5E-11 84.3 8.0 98 7-149 138-236 (457)
258 PRK07845 flavoprotein disulfid 98.3 1.1E-05 2.5E-10 79.2 13.2 98 10-152 178-276 (466)
259 PRK12778 putative bifunctional 98.3 1.7E-06 3.8E-11 90.0 7.7 37 7-43 429-465 (752)
260 TIGR03377 glycerol3P_GlpA glyc 98.3 0.00013 2.8E-09 72.9 20.6 201 90-313 123-348 (516)
261 PLN02507 glutathione reductase 98.3 1.2E-05 2.6E-10 79.6 13.0 98 10-152 204-302 (499)
262 PRK07251 pyridine nucleotide-d 98.3 1.3E-05 2.8E-10 78.4 13.1 97 10-152 158-255 (438)
263 COG1206 Gid NAD(FAD)-utilizing 98.3 1.9E-06 4.2E-11 76.5 6.4 112 9-122 3-128 (439)
264 COG3486 IucD Lysine/ornithine 98.3 5.7E-06 1.2E-10 76.1 9.5 149 5-154 1-161 (436)
265 TIGR01421 gluta_reduc_1 glutat 98.2 1.5E-05 3.3E-10 77.9 12.9 98 10-152 167-267 (450)
266 KOG1335 Dihydrolipoamide dehyd 98.2 1.8E-06 3.9E-11 78.3 5.7 128 8-149 38-184 (506)
267 TIGR01316 gltA glutamate synth 98.2 2.5E-06 5.4E-11 83.4 7.3 37 7-43 131-167 (449)
268 COG1249 Lpd Pyruvate/2-oxoglut 98.2 2E-05 4.3E-10 76.1 13.1 99 10-153 174-275 (454)
269 PRK12775 putative trifunctiona 98.2 2.3E-06 4.9E-11 91.0 7.4 36 8-43 429-464 (1006)
270 PRK07818 dihydrolipoamide dehy 98.2 1.8E-05 3.8E-10 78.0 13.1 98 10-152 173-275 (466)
271 KOG0685 Flavin-containing amin 98.2 8.8E-05 1.9E-09 69.8 16.7 38 7-44 19-57 (498)
272 PRK06912 acoL dihydrolipoamide 98.2 2.1E-05 4.6E-10 77.3 13.4 98 10-152 171-270 (458)
273 PRK07846 mycothione reductase; 98.2 1.5E-05 3.3E-10 78.0 12.2 97 10-152 167-264 (451)
274 PRK06327 dihydrolipoamide dehy 98.2 2.2E-05 4.8E-10 77.4 13.4 98 10-152 184-286 (475)
275 PRK06370 mercuric reductase; V 98.2 2.2E-05 4.7E-10 77.3 13.1 98 10-152 172-273 (463)
276 PRK05976 dihydrolipoamide dehy 98.2 1.9E-05 4.1E-10 77.9 12.7 98 10-152 181-283 (472)
277 TIGR02053 MerA mercuric reduct 98.2 2.5E-05 5.5E-10 76.9 13.2 98 10-152 167-268 (463)
278 PRK06115 dihydrolipoamide dehy 98.2 2.9E-05 6.3E-10 76.4 13.4 98 10-152 175-278 (466)
279 TIGR03385 CoA_CoA_reduc CoA-di 98.2 2E-05 4.4E-10 76.8 12.2 96 10-151 138-234 (427)
280 PRK06567 putative bifunctional 98.2 6.4E-06 1.4E-10 85.0 8.7 37 7-43 381-417 (1028)
281 PRK12770 putative glutamate sy 98.2 8.8E-06 1.9E-10 77.1 9.1 36 8-43 17-52 (352)
282 TIGR02374 nitri_red_nirB nitri 98.2 1.9E-05 4.2E-10 82.4 12.3 99 10-152 141-240 (785)
283 KOG0029 Amine oxidase [Seconda 98.1 2.8E-06 6.1E-11 83.0 5.4 39 6-44 12-50 (501)
284 COG4529 Uncharacterized protei 98.1 3.2E-05 6.9E-10 73.2 11.7 144 9-152 1-166 (474)
285 TIGR01423 trypano_reduc trypan 98.1 4.5E-05 9.7E-10 75.2 13.0 98 10-152 188-290 (486)
286 TIGR00031 UDP-GALP_mutase UDP- 98.1 3.9E-06 8.5E-11 79.1 5.1 35 10-44 2-36 (377)
287 PRK08010 pyridine nucleotide-d 98.1 4.6E-05 1E-09 74.6 12.8 97 10-152 159-256 (441)
288 PRK13512 coenzyme A disulfide 98.1 3.5E-05 7.7E-10 75.2 11.9 93 10-151 149-242 (438)
289 TIGR03452 mycothione_red mycot 98.1 4.8E-05 1E-09 74.5 12.8 97 10-152 170-267 (452)
290 TIGR01318 gltD_gamma_fam gluta 98.1 9.2E-06 2E-10 79.8 7.7 99 8-151 140-239 (467)
291 PRK14727 putative mercuric red 98.1 6.4E-05 1.4E-09 74.3 13.6 96 10-152 189-285 (479)
292 COG2907 Predicted NAD/FAD-bind 98.1 5.4E-06 1.2E-10 74.4 5.1 40 111-150 233-273 (447)
293 PF01593 Amino_oxidase: Flavin 98.1 0.0001 2.2E-09 71.8 14.8 45 108-152 222-267 (450)
294 PRK02106 choline dehydrogenase 98.1 4.5E-06 9.7E-11 84.1 5.2 37 6-42 2-39 (560)
295 PTZ00052 thioredoxin reductase 98.1 5.8E-05 1.3E-09 74.8 12.9 96 11-152 184-280 (499)
296 PRK14989 nitrite reductase sub 98.1 4.5E-05 9.7E-10 79.8 12.5 99 10-152 146-247 (847)
297 PTZ00188 adrenodoxin reductase 98.0 1.5E-05 3.2E-10 76.7 8.2 37 8-44 38-75 (506)
298 COG1148 HdrA Heterodisulfide r 98.0 1.5E-05 3.1E-10 74.8 7.8 94 9-134 124-218 (622)
299 PRK14694 putative mercuric red 98.0 6.8E-05 1.5E-09 73.9 13.2 96 10-152 179-275 (468)
300 PLN02576 protoporphyrinogen ox 98.0 5.3E-06 1.1E-10 82.6 5.4 38 7-44 10-48 (496)
301 PRK09564 coenzyme A disulfide 98.0 5.8E-05 1.3E-09 74.0 12.6 97 10-151 150-247 (444)
302 TIGR02733 desat_CrtD C-3',4' d 98.0 5.6E-06 1.2E-10 82.2 5.1 56 95-150 232-294 (492)
303 KOG2404 Fumarate reductase, fl 98.0 3.3E-05 7.1E-10 68.7 9.0 38 7-44 7-44 (477)
304 TIGR01438 TGR thioredoxin and 98.0 0.0001 2.2E-09 72.8 13.1 97 10-152 181-281 (484)
305 PRK06467 dihydrolipoamide dehy 98.0 8.2E-05 1.8E-09 73.3 12.4 97 10-152 175-276 (471)
306 PTZ00058 glutathione reductase 98.0 0.00012 2.7E-09 73.1 13.5 99 9-152 237-338 (561)
307 PLN02568 polyamine oxidase 98.0 1E-05 2.2E-10 80.5 5.5 52 96-149 243-295 (539)
308 PRK13748 putative mercuric red 97.9 0.00013 2.8E-09 73.8 13.1 96 10-152 271-367 (561)
309 TIGR01317 GOGAT_sm_gam glutama 97.9 2.4E-05 5.3E-10 77.1 7.6 36 8-43 142-177 (485)
310 COG0446 HcaD Uncharacterized N 97.9 8.3E-05 1.8E-09 72.1 11.3 98 10-151 137-238 (415)
311 COG0562 Glf UDP-galactopyranos 97.9 1.3E-05 2.9E-10 71.3 4.8 37 9-45 1-37 (374)
312 PTZ00318 NADH dehydrogenase-li 97.9 0.00014 2.9E-09 70.8 12.2 91 11-150 175-280 (424)
313 COG3349 Uncharacterized conser 97.9 1.4E-05 3.1E-10 76.2 4.8 34 11-44 2-35 (485)
314 KOG0405 Pyridine nucleotide-di 97.9 6.3E-05 1.4E-09 67.7 8.4 136 8-154 19-169 (478)
315 KOG4254 Phytoene desaturase [C 97.8 5.5E-05 1.2E-09 70.4 7.7 61 95-155 264-326 (561)
316 PRK06292 dihydrolipoamide dehy 97.8 0.0003 6.5E-09 69.3 13.2 97 10-152 170-270 (460)
317 COG1252 Ndh NADH dehydrogenase 97.8 9.4E-05 2E-09 69.8 8.9 93 9-150 155-262 (405)
318 PLN02676 polyamine oxidase 97.8 3.3E-05 7.1E-10 76.2 5.6 42 110-151 245-287 (487)
319 TIGR02462 pyranose_ox pyranose 97.8 2.6E-05 5.7E-10 76.9 4.8 36 10-45 1-36 (544)
320 PLN02546 glutathione reductase 97.8 0.00033 7.2E-09 70.0 12.5 98 10-152 253-352 (558)
321 COG2303 BetA Choline dehydroge 97.8 2.4E-05 5.3E-10 78.0 4.4 38 5-42 3-40 (542)
322 PRK12810 gltD glutamate syntha 97.7 4.3E-05 9.3E-10 75.3 5.9 37 8-44 142-178 (471)
323 PTZ00153 lipoamide dehydrogena 97.7 0.00045 9.8E-09 70.2 12.5 98 10-152 313-429 (659)
324 PRK12769 putative oxidoreducta 97.7 5.3E-05 1.2E-09 77.7 5.7 37 8-44 326-362 (654)
325 TIGR01292 TRX_reduct thioredox 97.7 0.00048 1E-08 63.6 11.6 90 10-150 142-238 (300)
326 KOG2960 Protein involved in th 97.7 3.9E-05 8.5E-10 64.0 3.7 131 9-152 76-236 (328)
327 PLN02529 lysine-specific histo 97.6 7E-05 1.5E-09 76.5 5.6 38 7-44 158-195 (738)
328 KOG1336 Monodehydroascorbate/f 97.6 0.00062 1.3E-08 64.3 11.3 100 9-152 213-315 (478)
329 KOG4716 Thioredoxin reductase 97.6 0.0017 3.7E-08 58.5 12.8 134 7-153 17-176 (503)
330 PLN02328 lysine-specific histo 97.6 9.6E-05 2.1E-09 75.9 5.7 37 8-44 237-273 (808)
331 PRK12814 putative NADPH-depend 97.5 0.00012 2.6E-09 74.9 5.7 37 8-44 192-228 (652)
332 PLN02785 Protein HOTHEAD 97.5 9.8E-05 2.1E-09 74.3 4.8 36 7-43 53-88 (587)
333 TIGR01810 betA choline dehydro 97.5 7.5E-05 1.6E-09 74.9 3.8 33 11-43 1-34 (532)
334 TIGR03140 AhpF alkyl hydropero 97.5 0.00085 1.8E-08 66.9 11.2 90 10-150 353-450 (515)
335 PRK12809 putative oxidoreducta 97.5 0.00016 3.4E-09 74.0 5.9 37 8-44 309-345 (639)
336 PRK10262 thioredoxin reductase 97.5 0.00097 2.1E-08 62.3 10.4 94 10-150 147-248 (321)
337 COG0493 GltD NADPH-dependent g 97.4 0.00021 4.6E-09 69.1 4.7 44 8-51 122-165 (457)
338 KOG3851 Sulfide:quinone oxidor 97.4 7.8E-05 1.7E-09 66.3 1.5 37 7-43 37-75 (446)
339 KOG1276 Protoporphyrinogen oxi 97.3 0.00028 6.1E-09 65.5 4.9 38 7-44 9-48 (491)
340 KOG0399 Glutamate synthase [Am 97.3 0.00024 5.3E-09 73.0 4.6 52 1-52 1777-1828(2142)
341 PRK12771 putative glutamate sy 97.3 0.00026 5.6E-09 71.5 4.8 37 8-44 136-172 (564)
342 TIGR03169 Nterm_to_SelD pyridi 97.3 0.0023 5E-08 61.0 11.1 91 10-150 146-243 (364)
343 PLN03000 amine oxidase 97.3 0.00037 8E-09 71.9 5.6 37 8-44 183-219 (881)
344 TIGR03862 flavo_PP4765 unchara 97.3 0.0032 6.9E-08 59.4 11.3 57 92-150 83-141 (376)
345 PRK11749 dihydropyrimidine deh 97.3 0.0021 4.5E-08 63.2 10.5 34 9-42 273-307 (457)
346 KOG1800 Ferredoxin/adrenodoxin 97.2 0.00039 8.5E-09 63.5 4.0 46 8-53 19-66 (468)
347 TIGR01316 gltA glutamate synth 97.2 0.0043 9.4E-08 60.8 11.7 33 10-42 273-305 (449)
348 PRK13984 putative oxidoreducta 97.2 0.00058 1.3E-08 69.7 5.6 37 8-44 282-318 (604)
349 PLN02976 amine oxidase 97.1 0.00057 1.2E-08 73.3 5.3 37 8-44 692-728 (1713)
350 PRK12770 putative glutamate sy 97.1 0.0042 9.1E-08 58.9 10.8 33 10-42 173-206 (352)
351 PRK15317 alkyl hydroperoxide r 97.1 0.0037 8.1E-08 62.4 10.3 90 10-150 352-449 (517)
352 KOG1238 Glucose dehydrogenase/ 97.1 0.00053 1.1E-08 67.3 4.0 38 7-44 55-93 (623)
353 PF13434 K_oxygenase: L-lysine 97.0 0.0008 1.7E-08 63.1 4.5 133 8-148 189-339 (341)
354 PRK12831 putative oxidoreducta 97.0 0.012 2.5E-07 58.0 12.5 33 10-42 282-314 (464)
355 TIGR01372 soxA sarcosine oxida 96.9 0.0056 1.2E-07 65.9 10.3 90 10-152 318-413 (985)
356 KOG1336 Monodehydroascorbate/f 96.9 0.0096 2.1E-07 56.5 10.5 105 9-150 74-181 (478)
357 PRK12810 gltD glutamate syntha 96.8 0.014 3E-07 57.7 11.3 102 10-150 282-400 (471)
358 KOG1335 Dihydrolipoamide dehyd 96.8 0.0069 1.5E-07 55.7 8.1 99 10-153 212-317 (506)
359 PF00996 GDI: GDP dissociation 96.7 0.0017 3.6E-08 62.4 4.5 39 6-44 1-39 (438)
360 COG1251 NirB NAD(P)H-nitrite r 96.7 0.0063 1.4E-07 60.8 7.9 97 11-151 147-244 (793)
361 TIGR03467 HpnE squalene-associ 96.6 0.24 5.1E-06 48.0 18.8 52 99-150 201-254 (419)
362 KOG1346 Programmed cell death 96.6 0.0073 1.6E-07 56.1 7.2 102 9-154 347-455 (659)
363 TIGR03143 AhpF_homolog putativ 96.5 0.022 4.7E-07 57.5 10.9 33 10-42 144-176 (555)
364 PRK12778 putative bifunctional 96.5 0.024 5.2E-07 59.4 11.3 33 10-42 571-604 (752)
365 PF06100 Strep_67kDa_ant: Stre 96.4 0.061 1.3E-06 51.9 12.4 36 9-44 2-41 (500)
366 PF02737 3HCDH_N: 3-hydroxyacy 96.1 0.0059 1.3E-07 51.6 3.8 32 11-42 1-32 (180)
367 PRK12814 putative NADPH-depend 96.1 0.056 1.2E-06 55.6 11.5 33 10-42 324-357 (652)
368 TIGR01318 gltD_gamma_fam gluta 96.0 0.063 1.4E-06 52.9 11.1 33 10-42 283-316 (467)
369 PF01210 NAD_Gly3P_dh_N: NAD-d 96.0 0.0081 1.8E-07 49.6 4.1 32 11-42 1-32 (157)
370 PLN02172 flavin-containing mon 96.0 0.017 3.7E-07 56.6 6.6 33 10-42 205-237 (461)
371 COG0569 TrkA K+ transport syst 95.9 0.0092 2E-07 52.4 4.3 34 11-44 2-35 (225)
372 KOG2495 NADH-dehydrogenase (ub 95.9 0.098 2.1E-06 49.2 10.9 114 7-154 53-174 (491)
373 KOG4405 GDP dissociation inhib 95.8 0.013 2.7E-07 54.4 4.3 49 1-52 1-49 (547)
374 PRK12779 putative bifunctional 95.6 0.091 2E-06 56.2 10.9 33 10-42 448-480 (944)
375 COG1251 NirB NAD(P)H-nitrite r 95.6 0.097 2.1E-06 52.6 10.0 111 9-154 3-117 (793)
376 PF02558 ApbA: Ketopantoate re 95.5 0.018 4E-07 47.1 4.3 31 12-42 1-31 (151)
377 PRK07066 3-hydroxybutyryl-CoA 95.5 0.021 4.5E-07 52.8 5.0 34 10-43 8-41 (321)
378 PRK06129 3-hydroxyacyl-CoA deh 95.5 0.018 3.8E-07 53.4 4.5 32 11-42 4-35 (308)
379 PRK07819 3-hydroxybutyryl-CoA 95.4 0.02 4.3E-07 52.4 4.5 34 10-43 6-39 (286)
380 PRK06249 2-dehydropantoate 2-r 95.4 0.023 5.1E-07 52.8 5.0 34 9-42 5-38 (313)
381 PRK02705 murD UDP-N-acetylmura 95.4 0.02 4.3E-07 56.5 4.6 34 11-44 2-35 (459)
382 PRK09853 putative selenate red 95.3 0.12 2.5E-06 55.1 10.3 33 10-42 669-703 (1019)
383 PRK01438 murD UDP-N-acetylmura 95.3 0.019 4.2E-07 56.8 4.5 33 10-42 17-49 (480)
384 PRK12769 putative oxidoreducta 95.3 0.17 3.6E-06 52.3 11.2 33 10-42 469-502 (654)
385 KOG2495 NADH-dehydrogenase (ub 95.3 0.042 9.1E-07 51.5 6.0 47 102-150 280-329 (491)
386 PRK07530 3-hydroxybutyryl-CoA 95.2 0.026 5.6E-07 52.0 4.6 34 9-42 4-37 (292)
387 PLN02676 polyamine oxidase 95.1 0.81 1.7E-05 45.4 15.0 39 6-44 23-62 (487)
388 PF00743 FMO-like: Flavin-bind 95.1 0.084 1.8E-06 52.7 8.0 39 10-48 184-222 (531)
389 PF03721 UDPG_MGDP_dh_N: UDP-g 95.0 0.018 4E-07 48.8 2.8 32 11-42 2-33 (185)
390 PRK05708 2-dehydropantoate 2-r 94.8 0.037 8E-07 51.2 4.5 33 10-42 3-35 (305)
391 PRK08293 3-hydroxybutyryl-CoA 94.8 0.038 8.2E-07 50.7 4.5 33 10-42 4-36 (287)
392 PRK06719 precorrin-2 dehydroge 94.8 0.045 9.8E-07 45.0 4.5 33 8-40 12-44 (157)
393 PRK06718 precorrin-2 dehydroge 94.8 0.041 9E-07 47.4 4.3 34 8-41 9-42 (202)
394 COG0446 HcaD Uncharacterized N 94.7 0.16 3.6E-06 49.0 9.0 105 12-152 1-108 (415)
395 PRK09260 3-hydroxybutyryl-CoA 94.6 0.04 8.7E-07 50.6 4.1 33 11-43 3-35 (288)
396 PRK14618 NAD(P)H-dependent gly 94.6 0.046 1E-06 51.2 4.6 32 11-42 6-37 (328)
397 TIGR03315 Se_ygfK putative sel 94.6 0.32 7E-06 52.0 11.1 34 9-42 666-701 (1012)
398 TIGR01470 cysG_Nterm siroheme 94.5 0.059 1.3E-06 46.5 4.8 33 10-42 10-42 (205)
399 PRK05675 sdhA succinate dehydr 94.5 0.28 6.1E-06 49.7 10.2 59 94-152 125-191 (570)
400 PF02254 TrkA_N: TrkA-N domain 94.4 0.049 1.1E-06 42.2 3.8 32 12-43 1-32 (116)
401 PRK14106 murD UDP-N-acetylmura 94.4 0.062 1.3E-06 52.8 5.1 34 9-42 5-38 (450)
402 PRK05808 3-hydroxybutyryl-CoA 94.4 0.055 1.2E-06 49.5 4.5 33 11-43 5-37 (282)
403 PF13478 XdhC_C: XdhC Rossmann 94.3 0.04 8.7E-07 44.0 3.0 32 12-43 1-32 (136)
404 PRK06035 3-hydroxyacyl-CoA deh 94.2 0.063 1.4E-06 49.3 4.4 33 10-42 4-36 (291)
405 PF13241 NAD_binding_7: Putati 94.1 0.043 9.3E-07 41.6 2.7 35 8-42 6-40 (103)
406 PRK12921 2-dehydropantoate 2-r 94.1 0.064 1.4E-06 49.6 4.5 30 11-40 2-31 (305)
407 PLN02545 3-hydroxybutyryl-CoA 94.1 0.068 1.5E-06 49.2 4.6 34 10-43 5-38 (295)
408 PRK06522 2-dehydropantoate 2-r 94.0 0.069 1.5E-06 49.4 4.4 32 11-42 2-33 (304)
409 PRK06130 3-hydroxybutyryl-CoA 93.9 0.081 1.7E-06 49.2 4.7 33 10-42 5-37 (311)
410 PTZ00082 L-lactate dehydrogena 93.9 0.1 2.3E-06 48.4 5.3 38 6-43 3-41 (321)
411 PRK13984 putative oxidoreducta 93.9 0.52 1.1E-05 48.2 10.9 34 275-314 569-602 (604)
412 TIGR02354 thiF_fam2 thiamine b 93.8 0.1 2.2E-06 44.9 4.7 34 9-42 21-55 (200)
413 TIGR03385 CoA_CoA_reduc CoA-di 93.7 0.41 8.8E-06 46.7 9.3 46 106-151 55-104 (427)
414 PRK08229 2-dehydropantoate 2-r 93.7 0.091 2E-06 49.5 4.6 31 11-41 4-34 (341)
415 PRK04148 hypothetical protein; 93.5 0.062 1.3E-06 42.5 2.6 33 10-43 18-50 (134)
416 COG5044 MRS6 RAB proteins gera 93.5 0.12 2.6E-06 47.6 4.7 37 8-44 5-41 (434)
417 COG1004 Ugd Predicted UDP-gluc 93.4 0.054 1.2E-06 50.5 2.5 33 11-43 2-34 (414)
418 TIGR00518 alaDH alanine dehydr 93.4 0.13 2.7E-06 49.0 5.1 35 8-42 166-200 (370)
419 cd00401 AdoHcyase S-adenosyl-L 93.4 0.099 2.2E-06 50.1 4.3 34 9-42 202-235 (413)
420 cd05292 LDH_2 A subgroup of L- 93.4 0.11 2.3E-06 48.1 4.5 33 11-43 2-36 (308)
421 PRK11064 wecC UDP-N-acetyl-D-m 93.3 0.097 2.1E-06 50.6 4.3 34 10-43 4-37 (415)
422 PRK08268 3-hydroxy-acyl-CoA de 93.2 0.13 2.7E-06 51.2 4.8 36 8-43 6-41 (507)
423 PRK07531 bifunctional 3-hydrox 93.1 0.12 2.6E-06 51.4 4.6 33 11-43 6-38 (495)
424 PRK00066 ldh L-lactate dehydro 93.1 0.17 3.6E-06 47.0 5.3 38 6-43 3-42 (315)
425 PRK09424 pntA NAD(P) transhydr 93.1 0.1 2.2E-06 51.4 4.0 35 8-42 164-198 (509)
426 PF00899 ThiF: ThiF family; I 93.1 0.13 2.8E-06 41.1 4.0 34 10-43 3-37 (135)
427 PF01262 AlaDh_PNT_C: Alanine 93.0 0.14 3.1E-06 42.7 4.3 35 8-42 19-53 (168)
428 PRK14619 NAD(P)H-dependent gly 93.0 0.16 3.5E-06 47.1 5.1 34 9-42 4-37 (308)
429 PRK12809 putative oxidoreducta 93.0 0.84 1.8E-05 47.0 10.7 33 10-42 452-485 (639)
430 TIGR02964 xanthine_xdhC xanthi 93.0 0.15 3.3E-06 45.3 4.7 37 7-43 98-134 (246)
431 KOG1346 Programmed cell death 93.0 0.38 8.2E-06 45.2 7.2 132 7-152 176-313 (659)
432 PF01488 Shikimate_DH: Shikima 92.9 0.21 4.5E-06 40.0 4.9 34 8-41 11-45 (135)
433 PRK14620 NAD(P)H-dependent gly 92.8 0.12 2.7E-06 48.3 4.0 32 11-42 2-33 (326)
434 TIGR01763 MalateDH_bact malate 92.7 0.18 3.9E-06 46.6 4.9 33 10-42 2-35 (305)
435 KOG1439 RAB proteins geranylge 92.6 0.051 1.1E-06 50.5 1.1 39 6-44 1-39 (440)
436 PRK12475 thiamine/molybdopteri 92.6 0.18 4E-06 47.2 4.8 35 9-43 24-59 (338)
437 PRK07417 arogenate dehydrogena 92.6 0.13 2.9E-06 46.9 3.8 32 11-42 2-33 (279)
438 PRK12775 putative trifunctiona 92.4 1.5 3.3E-05 47.6 12.0 33 9-41 571-604 (1006)
439 PLN02852 ferredoxin-NADP+ redu 92.4 1.3 2.9E-05 43.7 10.7 22 10-31 167-188 (491)
440 PRK15116 sulfur acceptor prote 92.4 0.22 4.7E-06 44.8 4.8 36 8-43 29-65 (268)
441 TIGR02356 adenyl_thiF thiazole 92.4 0.23 5.1E-06 42.8 4.9 35 8-42 20-55 (202)
442 PRK00094 gpsA NAD(P)H-dependen 92.3 0.16 3.5E-06 47.4 4.2 32 11-42 3-34 (325)
443 PF03446 NAD_binding_2: NAD bi 92.3 0.16 3.5E-06 42.1 3.7 33 10-42 2-34 (163)
444 PF00056 Ldh_1_N: lactate/mala 92.2 0.24 5.3E-06 39.9 4.5 32 11-42 2-36 (141)
445 PRK07502 cyclohexadienyl dehyd 92.2 0.18 4E-06 46.7 4.3 33 10-42 7-41 (307)
446 cd01487 E1_ThiF_like E1_ThiF_l 92.0 0.26 5.6E-06 41.3 4.6 32 11-42 1-33 (174)
447 TIGR03026 NDP-sugDHase nucleot 92.0 0.16 3.4E-06 49.2 3.8 33 11-43 2-34 (411)
448 PRK07688 thiamine/molybdopteri 92.0 0.24 5.1E-06 46.5 4.8 34 9-42 24-58 (339)
449 KOG2755 Oxidoreductase [Genera 92.0 0.12 2.6E-06 45.3 2.5 31 12-42 2-34 (334)
450 cd01483 E1_enzyme_family Super 91.8 0.3 6.5E-06 39.5 4.6 33 11-43 1-34 (143)
451 TIGR00936 ahcY adenosylhomocys 91.7 0.22 4.9E-06 47.5 4.3 35 9-43 195-229 (406)
452 PRK06223 malate dehydrogenase; 91.6 0.26 5.7E-06 45.6 4.7 34 10-43 3-37 (307)
453 PLN02328 lysine-specific histo 91.6 6.9 0.00015 41.2 15.2 37 112-149 449-486 (808)
454 KOG2304 3-hydroxyacyl-CoA dehy 91.6 0.2 4.2E-06 42.9 3.4 37 7-43 9-45 (298)
455 PF10727 Rossmann-like: Rossma 91.6 0.11 2.4E-06 40.9 1.8 36 6-41 7-42 (127)
456 cd01080 NAD_bind_m-THF_DH_Cycl 91.6 0.31 6.6E-06 40.6 4.5 34 8-41 43-77 (168)
457 PRK10669 putative cation:proto 91.5 0.21 4.4E-06 50.6 4.1 35 9-43 417-451 (558)
458 TIGR02279 PaaC-3OHAcCoADH 3-hy 91.5 0.23 5E-06 49.2 4.4 35 9-43 5-39 (503)
459 COG1748 LYS9 Saccharopine dehy 91.5 0.27 5.8E-06 46.5 4.5 33 10-42 2-35 (389)
460 PLN02576 protoporphyrinogen ox 91.4 16 0.00034 36.4 17.4 34 275-314 455-488 (496)
461 PRK12549 shikimate 5-dehydroge 91.2 0.3 6.4E-06 44.6 4.5 33 10-42 128-161 (284)
462 cd05293 LDH_1 A subgroup of L- 91.2 0.34 7.5E-06 44.8 5.0 35 8-42 2-38 (312)
463 PLN03000 amine oxidase 91.2 9.3 0.0002 40.5 15.6 48 95-148 381-429 (881)
464 PRK08644 thiamine biosynthesis 91.1 0.39 8.5E-06 41.7 4.9 34 9-42 28-62 (212)
465 TIGR02355 moeB molybdopterin s 91.1 0.35 7.7E-06 42.9 4.7 35 9-43 24-59 (240)
466 PRK11730 fadB multifunctional 91.0 0.23 4.9E-06 51.7 3.9 34 10-43 314-347 (715)
467 cd05291 HicDH_like L-2-hydroxy 91.0 0.3 6.6E-06 45.2 4.4 33 11-43 2-36 (306)
468 TIGR02437 FadB fatty oxidation 91.0 0.23 5E-06 51.5 4.0 35 9-43 313-347 (714)
469 PRK05690 molybdopterin biosynt 91.0 0.36 7.9E-06 43.0 4.7 34 9-42 32-66 (245)
470 cd01339 LDH-like_MDH L-lactate 90.8 0.29 6.3E-06 45.1 4.0 31 12-42 1-32 (300)
471 PRK11199 tyrA bifunctional cho 90.6 0.37 7.9E-06 46.0 4.7 35 8-42 97-132 (374)
472 PLN02976 amine oxidase 90.6 34 0.00074 38.6 23.8 38 111-148 947-995 (1713)
473 PRK09496 trkA potassium transp 90.6 0.3 6.4E-06 48.1 4.2 33 11-43 2-34 (453)
474 TIGR01915 npdG NADPH-dependent 90.6 0.36 7.8E-06 42.2 4.2 32 11-42 2-34 (219)
475 PRK05476 S-adenosyl-L-homocyst 90.6 0.35 7.7E-06 46.5 4.5 35 9-43 212-246 (425)
476 COG1063 Tdh Threonine dehydrog 90.5 0.33 7.3E-06 45.8 4.3 32 11-42 171-203 (350)
477 TIGR02441 fa_ox_alpha_mit fatt 90.5 0.29 6.2E-06 51.0 4.1 34 10-43 336-369 (737)
478 PRK12771 putative glutamate sy 90.5 3.2 7E-05 42.1 11.6 34 9-42 267-301 (564)
479 TIGR01505 tartro_sem_red 2-hyd 90.5 0.32 6.9E-06 44.7 4.0 32 11-42 1-32 (291)
480 PRK02472 murD UDP-N-acetylmura 90.4 0.41 8.9E-06 47.0 5.0 33 10-42 6-38 (447)
481 COG0492 TrxB Thioredoxin reduc 90.4 2.2 4.8E-05 39.3 9.4 34 10-43 144-177 (305)
482 TIGR03736 PRTRC_ThiF PRTRC sys 90.4 0.45 9.8E-06 42.1 4.7 36 7-42 9-55 (244)
483 PRK08306 dipicolinate synthase 90.4 0.34 7.5E-06 44.5 4.1 34 9-42 152-185 (296)
484 cd00757 ThiF_MoeB_HesA_family 90.3 0.46 1E-05 41.8 4.7 34 9-42 21-55 (228)
485 PRK08328 hypothetical protein; 90.3 0.47 1E-05 41.9 4.7 34 9-42 27-61 (231)
486 TIGR00561 pntA NAD(P) transhyd 90.2 0.37 8E-06 47.4 4.3 34 9-42 164-197 (511)
487 cd05311 NAD_bind_2_malic_enz N 90.2 0.52 1.1E-05 41.4 4.9 34 9-42 25-61 (226)
488 PRK04308 murD UDP-N-acetylmura 90.2 0.5 1.1E-05 46.4 5.3 34 10-43 6-39 (445)
489 PLN02602 lactate dehydrogenase 90.0 0.57 1.2E-05 44.0 5.3 33 10-42 38-72 (350)
490 TIGR02853 spore_dpaA dipicolin 90.0 0.4 8.8E-06 43.8 4.2 34 9-42 151-184 (287)
491 COG1893 ApbA Ketopantoate redu 89.8 0.38 8.2E-06 44.4 3.9 32 11-42 2-33 (307)
492 PRK03369 murD UDP-N-acetylmura 89.8 0.39 8.5E-06 47.7 4.3 33 10-42 13-45 (488)
493 PLN02353 probable UDP-glucose 89.8 0.39 8.4E-06 47.1 4.2 33 11-43 3-37 (473)
494 PRK03659 glutathione-regulated 89.8 0.43 9.2E-06 48.7 4.6 34 9-42 400-433 (601)
495 COG0287 TyrA Prephenate dehydr 89.7 0.57 1.2E-05 42.5 4.8 35 9-43 3-37 (279)
496 PRK15057 UDP-glucose 6-dehydro 89.7 0.38 8.3E-06 46.0 3.9 32 11-43 2-33 (388)
497 cd00755 YgdL_like Family of ac 89.6 0.58 1.3E-05 41.2 4.7 34 9-42 11-45 (231)
498 cd01075 NAD_bind_Leu_Phe_Val_D 89.5 0.56 1.2E-05 40.3 4.5 33 10-42 29-61 (200)
499 PLN02494 adenosylhomocysteinas 89.5 0.5 1.1E-05 45.8 4.5 35 9-43 254-288 (477)
500 COG0686 Ald Alanine dehydrogen 89.4 0.3 6.6E-06 44.0 2.8 34 9-42 168-201 (371)
No 1
>PLN02463 lycopene beta cyclase
Probab=100.00 E-value=1.7e-69 Score=517.69 Aligned_cols=425 Identities=85% Similarity=1.383 Sum_probs=385.6
Q ss_pred CCCCCCCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCC
Q 014377 2 YDPSKGLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNT 81 (426)
Q Consensus 2 ~~~~~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (426)
++++....+||+||||||||+++|..|++.|++|+|||+.+...++++++.|.+.++.+++.+++.+.|+...+++.+..
T Consensus 21 ~~~~~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~ 100 (447)
T PLN02463 21 FDPSKSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGK 100 (447)
T ss_pred CCCccccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCC
Confidence 56777778999999999999999999999999999999988777888999999999999999999999998888877655
Q ss_pred ccccCCCccccCHHHHHHHHHHHHHhCCcEEEEEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCccccccCCCCC
Q 014377 82 KKDLDRPYGRVNRKLLKSKMLQKCITNGVKFHQAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRCLVQYDKPYNP 161 (426)
Q Consensus 82 ~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~~r~~~~~~~~ 161 (426)
......+|+.|+|..|.+.|.+++.+.|++++.++|++++.+++++.|++++|.+++||+||+|||.+|.+.+...+...
T Consensus 101 ~~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~l~~~~~~~~~ 180 (447)
T PLN02463 101 KKDLDRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRCLVQYDKPFNP 180 (447)
T ss_pred CccccCcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcCccCCCCCCCc
Confidence 55667899999999999999999988999988789999998888889999999999999999999999998776555557
Q ss_pred ceeeEEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeEEEecccCcCCCCCChHHHHHH
Q 014377 162 GYQVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETSLVARPGVPMKDIQER 241 (426)
Q Consensus 162 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~~~~~~~~~~~~~ 241 (426)
++|.++|+.++++..+++.+.+++|||+..|.+..+.+...+...++|+|++|++++++++|.|+...++..+.++++++
T Consensus 181 g~Q~a~Gi~~ev~~~p~d~~~~vlMD~r~~~~~~~~~~~~~~~~~p~FlY~~P~~~~~~~vEeT~l~s~~~~~~~~lk~~ 260 (447)
T PLN02463 181 GYQVAYGILAEVDSHPFDLDKMLFMDWRDSHLGNNPELRARNSKLPTFLYAMPFSSNRIFLEETSLVARPGLPMDDIQER 260 (447)
T ss_pred cceeeeeEEeecCCCCcccccchhhhcChhhccccchhhhccCCCCceEEEEecCCCeEEEEeeeeecCCCCCHHHHHHH
Confidence 88999999999887788888899999998886654444444444478999999999999999998888888888999999
Q ss_pred HHHHHhhcCCccccccccceEeecCCCCCCCCCCceeEeeccCCCCCCCCcHHHHHHHHhcHHHHHHHHHhcCCCCC--C
Q 014377 242 MVARLKHLGIKVRSIEEDEHCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVRSLSSDRS--I 319 (426)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~liGdAa~~~~P~~G~G~~~a~~~a~~la~~i~~~l~~~~~--~ 319 (426)
+.++++..++...++.+.+.+.|||++..+...++++++||||++++|.+|+|+..++..|..+|++|.++++.++. .
T Consensus 261 L~~~l~~~Gi~~~~i~~~E~~~IPmg~~~~~~~~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~~~~~~~~~~~ 340 (447)
T PLN02463 261 MVARLRHLGIKVKSVEEDEKCVIPMGGPLPVIPQRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYLGSSRSNSF 340 (447)
T ss_pred HHHHHHHCCCCcceeeeeeeeEeeCCCCCCCCCCCEEEecchhcCcCCCccccHHHHHHHHHHHHHHHHHHHhcCCCcCC
Confidence 99999988888888899999999999887777889999999999999999999999999999999999999987665 5
Q ss_pred chhhhHHHHHHhcCCHHHHHHHHHHHhHHHHHhCCChhHHHHHHHHhcCCCccccccccCCCCChHHHHHHHHHhhhcCC
Q 014377 320 SGHKLSAEVWKDLWPIERRRQREFFCFGMDILLKLDLPATRRFFDAFFDLEPRYWHGFLSSRLFLPELLVFGLSLFSHAS 399 (426)
Q Consensus 320 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~ 399 (426)
......++.|..+|+.++++++.|++|+++.|++++.+.+++||++||+||++.|.+||++++++.+|+.+|++||..+|
T Consensus 341 ~~~~~~~~~w~~lw~~~~~~~~~~~~fg~~~l~~~~~~~~~~ff~~ff~l~~~~~~gfl~~~~~~~~l~~~~~~~f~~~~ 420 (447)
T PLN02463 341 RGDELSAEVWNDLWPIERRRQREFFCFGMDILLKLDLDGTRRFFDAFFDLEPHYWHGFLSSRLFLPELLLFGLSLFSHAS 420 (447)
T ss_pred ChHHHHHHHHHHhCCHhHhHhHHHHHhHHHHHHcCChHHHHHHHHHHHcCCHHHccccccCCCChHHHHHHHHHHHHhCC
Confidence 66778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHhhCChhHHHHHHhhhccCC
Q 014377 400 NTSRLEIMAKGTLPLVNMINNLVQDTD 426 (426)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (426)
|.+|+.++.++++|+.+|++|++++++
T Consensus 421 ~~~r~~~~~~~~~~~~~~~~~~~~~~~ 447 (447)
T PLN02463 421 NTSRLEIMAKGTVPLVKMINNLIQDRI 447 (447)
T ss_pred HHHHHHHHHcCChhHHHHHHHhcccCC
Confidence 999999999999999999999998764
No 2
>PLN02697 lycopene epsilon cyclase
Probab=100.00 E-value=3.3e-62 Score=473.54 Aligned_cols=415 Identities=39% Similarity=0.710 Sum_probs=357.5
Q ss_pred CCCCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccc
Q 014377 5 SKGLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKD 84 (426)
Q Consensus 5 ~~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (426)
+....+||+||||||||+++|..|++.|++|+|||+.. .+..++|.|...++.+++.+++.+.|++..+++++.....
T Consensus 104 ~~~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~--p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~ 181 (529)
T PLN02697 104 IGDGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL--PFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIM 181 (529)
T ss_pred cccCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcc--cCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceee
Confidence 34567999999999999999999999999999999863 3566789998889999999888899999888887655555
Q ss_pred cCCCccccCHHHHHHHHHHHHHhCCcEEEEEEEEEEEEeCCeEE-EEEcCCcEEEcCEEEECCCCCCc-cccccC-CCCC
Q 014377 85 LDRPYGRVNRKLLKSKMLQKCITNGVKFHQAKVIKVIHEESKSL-LICNDGVTIQAAVVLDATGFSRC-LVQYDK-PYNP 161 (426)
Q Consensus 85 ~~~~~~~v~r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~-v~~~~g~~i~a~~vV~AdG~~s~-~r~~~~-~~~~ 161 (426)
...+|+.|+|..|.+.|.+++.+.|+++++++|++++.+++++. +.+.+|.++.|++||+|||.+|. ...... ....
T Consensus 182 ~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S~rl~~~~~~~~~~ 261 (529)
T PLN02697 182 IGRAYGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAASGRLLQYEVGGPRV 261 (529)
T ss_pred ccCcccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcChhhhhccccCCCCc
Confidence 67889889999999999999998999988889999988766654 45678889999999999999993 222111 1234
Q ss_pred ceeeEEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeEEEecccCcCCCCCChHHHHHH
Q 014377 162 GYQVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETSLVARPGVPMKDIQER 241 (426)
Q Consensus 162 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~~~~~~~~~~~~~ 241 (426)
++|.++|++++++..+++++.+++|||+..+.+..... ....++|+|++|+++++++||.|++...+..+.+.++++
T Consensus 262 ~~Q~a~Gi~ve~~~~~~d~~~~vlMD~r~~~~~~~~~~---~~~~p~FlYvlP~~~~~~~VE~T~l~~~~~l~~~~l~~~ 338 (529)
T PLN02697 262 CVQTAYGVEVEVENNPYDPSLMVFMDYRDYFKEKVSHL---EAEYPTFLYAMPMSSTRVFFEETCLASKDAMPFDLLKKR 338 (529)
T ss_pred ccEEEEEEEEEecCCCCCcchheeeccccccccccccc---cCCCceEEEEeecCCCeEEEEEeeeccCCCCCHHHHHHH
Confidence 57999999999988888888899999886543221111 112368999999999999999998877887888999999
Q ss_pred HHHHHhhcCCccccccccceEeecCCCCCCCCCCceeEeeccCCCCCCCCcHHHHHHHHhcHHHHHHHHHhcCCCCC---
Q 014377 242 MVARLKHLGIKVRSIEEDEHCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVRSLSSDRS--- 318 (426)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~liGdAa~~~~P~~G~G~~~a~~~a~~la~~i~~~l~~~~~--- 318 (426)
+.++++..++...++.+.+.+.+||+++.+...++++++||||+++||.||||+..++.+|..+|++|+++++.++.
T Consensus 339 L~~~l~~~Gi~~~~i~~~E~g~iPm~g~~~~~~~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~~~~~~ 418 (529)
T PLN02697 339 LMSRLETMGIRILKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIARILKNVSSGGK 418 (529)
T ss_pred HHHHHHhCCCCcceEEEEEeeeecCCCCCcccCCCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHHHhhCCccccc
Confidence 99999999888888999999999998887777889999999999999999999999999999999999999976541
Q ss_pred ---CchhhhHHHHHHhcCCHHHHHHHHHHHhHHHHHhCCChhHHHHHHHHhcCCCccccccccCCCCChHHHHHHHHHhh
Q 014377 319 ---ISGHKLSAEVWKDLWPIERRRQREFFCFGMDILLKLDLPATRRFFDAFFDLEPRYWHGFLSSRLFLPELLVFGLSLF 395 (426)
Q Consensus 319 ---~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~ 395 (426)
......+.+.|..+|+.+++.++.|+.++++++++++++.++++|++||+||++.|.+||++++++.|++.+|++||
T Consensus 419 ~~~~~~~~~~l~~~~~lw~~e~~r~~~~~~~g~~~l~~l~~~~~~~ff~~ff~L~~~~~~~Fl~~~l~~~~l~~~~~~~f 498 (529)
T PLN02697 419 LGTSNSSNISMQAWNTLWPQERKRQRAFFLFGLALILQLDTEGIRTFFVTFFRLPKWMWQGFLGSTLSSVDLILFALYMF 498 (529)
T ss_pred cccccchHHHHHHHHHhChHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHhhHhhccCCHHHHHHHHHHHH
Confidence 12345566778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChhhHHHHHh--hCChhHHHHHHhhhcc
Q 014377 396 SHASNTSRLEIMA--KGTLPLVNMINNLVQD 424 (426)
Q Consensus 396 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 424 (426)
..+||.+|+.++. +.+.|+.+|++||+++
T Consensus 499 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 529 (529)
T PLN02697 499 VIAPNQLRMQLVRHLISDPTGATMIKTYLTL 529 (529)
T ss_pred HhCChhHHHHHHHhhcCCchHhHHHHHhhcC
Confidence 9999999999975 7789999999999874
No 3
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=100.00 E-value=2.3e-51 Score=393.98 Aligned_cols=387 Identities=42% Similarity=0.717 Sum_probs=314.5
Q ss_pred cEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCcc
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPYG 90 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (426)
||+||||||||+++|+.|++.|++|+|||+++....+.+|+.|...++.+++.+++.+.|++...............+|.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 89999999999999999999999999999998777777899998778888887777788887544443223334456777
Q ss_pred ccCHHHHHHHHHHHHHhCCcEEEEEEEEEEEEe-CCeEEEEEcCCcEEEcCEEEECCCCCCccccccCCCCCceeeEEEE
Q 014377 91 RVNRKLLKSKMLQKCITNGVKFHQAKVIKVIHE-ESKSLLICNDGVTIQAAVVLDATGFSRCLVQYDKPYNPGYQVAYGI 169 (426)
Q Consensus 91 ~v~r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~-~~~~~v~~~~g~~i~a~~vV~AdG~~s~~r~~~~~~~~~~~~~~g~ 169 (426)
.+++..|.+.|.+++.+.|++++.++|++++.+ ++.+.|++.+|++++|++||+|||.+|.+++.......+++.+.|+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s~~~~~~~~~~~~~q~~~G~ 160 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGPLVQYVRFPLNVGFQVAYGV 160 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCchhcccccCCCCceEEEEEEE
Confidence 899999999999999988998887788888877 5667888888889999999999999996654443444567889999
Q ss_pred EEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeEEEecccCcCCCCCChHHHHHHHHHHHhhc
Q 014377 170 LAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETSLVARPGVPMKDIQERMVARLKHL 249 (426)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (426)
.+++..++++.+..++|++...+.. .+... ...++|+|++|.++++++++.+........+.+++++.+.++++..
T Consensus 161 ~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~---~~~~~f~~~lP~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~ 236 (388)
T TIGR01790 161 EARLSRPPHGPSSMVIMDARVDQLA-APELK---GYRPTFLYAMPLGSTRVFIEETSLADRPALPRDRLRQRILARLNAQ 236 (388)
T ss_pred EEEEcCCCCCCCceEEEeccccccc-ccccc---CCCCceEEEeecCCCeEEEEeccccCCCCCCHHHHHHHHHHHHHHc
Confidence 9998877777778889998665421 00000 0114599999999999999988766556667889999999999888
Q ss_pred CCccccccccceEeecCCCCCCCCCCceeEeeccCCCCCCCCcHHHHHHHHhcHHHHHHHHHhcCCCCCCchhhhHHHHH
Q 014377 250 GIKVRSIEEDEHCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVRSLSSDRSISGHKLSAEVW 329 (426)
Q Consensus 250 ~~~~~~~~~~~~~~~p~~~~~~~~~~~v~liGdAa~~~~P~~G~G~~~a~~~a~~la~~i~~~l~~~~~~~~~~~y~~~~ 329 (426)
++...++.+.+.+.+|+....+...+|++++|||||.++|++|||++.++++|..+|+.|.++++.+.. ..++.|+
T Consensus 237 g~~~~~i~~~~~~~iP~~~~~~~~~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~~~~-~~~~~~~--- 312 (388)
T TIGR01790 237 GWQIKTIEEEEWGALPVGLPGPFLPQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQSSE-LATAAWD--- 312 (388)
T ss_pred CCeeeEEEeeeeEEEecccCCCccCCCeeeeechhcCcCCcccccHHHHHHHHHHHHHHHHHHhccCHH-HHHHHHH---
Confidence 887777788889999997765667789999999999999999999999999999999999988864421 2334444
Q ss_pred HhcCCHHHHHHHHHHHhHHHHHhCCChhHHHHHHHHhcCCCccccccccCCCCChHHHHHHHHHhhhcCChhhHHHH
Q 014377 330 KDLWPIERRRQREFFCFGMDILLKLDLPATRRFFDAFFDLEPRYWHGFLSSRLFLPELLVFGLSLFSHASNTSRLEI 406 (426)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 406 (426)
..|......+..+..+...+++.++++..+++|+.||+++++.|.+||++++++.|++++|+++|...|+.+|+.+
T Consensus 313 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (388)
T TIGR01790 313 -GLWPTERRRQRYFRLLGRMLFLALEPEERRRFFQRFFGLPEELWERFLAARLSLPDLLRVLLRMFGQPPNPVRSAL 388 (388)
T ss_pred -HhchHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHCCCHHHHhhhhcCCCCHHHHHHHHHHHhCcCChhhhhcC
Confidence 4555555555556666666778889999999999999999999999999999999999999999999999998753
No 4
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=100.00 E-value=1.5e-51 Score=390.27 Aligned_cols=365 Identities=38% Similarity=0.622 Sum_probs=309.0
Q ss_pred cEEEECchHHHHHHHHHH--HHCCCcEEEEcCCCCCCCCC--cccchhHHHhhcCchhhhhhccCCeEEEecCCCccccC
Q 014377 11 DLAVVGGGPAGLAVAQQV--SEAGLSVCSIDPSPKLIWPN--NYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLD 86 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~L--a~~G~~V~liE~~~~~~~~~--~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
|||||||||||+++|++| ++.|.+|+|||+++...+++ +|+.|...+.. +.+++.+.|+...+.+++.......
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~--~~~~v~~~w~~~~v~~~~~~~~~~~ 78 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGP--LDSLVSHRWSGWRVYFPDGSRILID 78 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccc--hHHHHheecCceEEEeCCCceEEcc
Confidence 899999999999999999 78899999999998875555 45555443222 6788899999999998877655555
Q ss_pred CCccccCHHHHHHHHHHHHHhCCcEEEEEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCccccccCCCCCceeeE
Q 014377 87 RPYGRVNRKLLKSKMLQKCITNGVKFHQAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRCLVQYDKPYNPGYQVA 166 (426)
Q Consensus 87 ~~~~~v~r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~~r~~~~~~~~~~~~~ 166 (426)
.+|..|++..|.+.|.+++.+.|+.+++++|++++.+++++.|++.+|++++|++||||+|..+. .....++|++
T Consensus 79 ~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~-----~~~~~~~Q~f 153 (374)
T PF05834_consen 79 YPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP-----KARPLGLQHF 153 (374)
T ss_pred cceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc-----ccccccccee
Confidence 68889999999999999999666655599999999998888999999999999999999997665 2334567999
Q ss_pred EEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeEEEecccCcCCCCCChHHHHHHHHHHH
Q 014377 167 YGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETSLVARPGVPMKDIQERMVARL 246 (426)
Q Consensus 167 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 246 (426)
+|++++++.++++++.+.+|||+.++.. ..++|+|++|+++++++||.|.+...+.++.+++++++.+++
T Consensus 154 ~G~~v~~~~~~f~~~~~~lMD~r~~~~~----------~~~~F~Y~lP~~~~~alvE~T~fs~~~~~~~~~~~~~l~~~l 223 (374)
T PF05834_consen 154 YGWEVETDEPVFDPDTATLMDFRVPQSA----------DGPSFLYVLPFSEDRALVEETSFSPRPALPEEELKARLRRYL 223 (374)
T ss_pred EEEEEeccCCCCCCCceEEEEecccCCC----------CCceEEEEEEcCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 9999999988899999999999987641 126999999999999999999998888889999999999999
Q ss_pred hhcCCccccccccceEeecC--CCCCCCCCCceeEeeccCCCCCCCCcHHHHHHHHhcHHHHHHHHHhcCCCCCCchhhh
Q 014377 247 KHLGIKVRSIEEDEHCVIPM--GGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVRSLSSDRSISGHKL 324 (426)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~v~liGdAa~~~~P~~G~G~~~a~~~a~~la~~i~~~l~~~~~~~~~~~ 324 (426)
...++...++.+.+.+.||| +...+...++++.+|+|||+++|.|||++..+++.+..+|+.+.+. +.
T Consensus 224 ~~~g~~~~~i~~~E~G~IPm~~~~~~~~~~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~~~---~~------- 293 (374)
T PF05834_consen 224 ERLGIDDYEILEEERGVIPMTTGGFPPRFGQRVIRIGTAGGMVKPSTGYSFARIQRQADAIADALAKG---GA------- 293 (374)
T ss_pred HHcCCCceeEEEeecceeecccCCCccccCCCeeeEEccccCCCCcccHHHHHHHHHHHHHHHHHhhc---cc-------
Confidence 99999999999999999999 4555666788999999999999999999999999998888888752 10
Q ss_pred HHHHHHhcCCHHHHHHHHHH-HhHHHHHhCCChhHHHHHHHHhcCCCccccccccCCCCChHHHHHHHHHhhhcCChhh
Q 014377 325 SAEVWKDLWPIERRRQREFF-CFGMDILLKLDLPATRRFFDAFFDLEPRYWHGFLSSRLFLPELLVFGLSLFSHASNTS 402 (426)
Q Consensus 325 y~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~ 402 (426)
....+...|+..++....|+ .+++++|+..+++..+.||+.|++++++.|.+||++++++.|++++|+++|+..+...
T Consensus 294 ~~~~~~~~~~~~~~~~~~flr~l~~~~l~~~~~~~~~~f~~~f~~l~~~~~~~FL~~~~~~~~~~~i~~~~p~~p~~~a 372 (374)
T PF05834_consen 294 PLRAWSPLWPRERWRDRRFLRVLGLEVLLRLPPDGRRIFFRMFFRLPPDRIARFLSERSSLADDLRIMLALPKRPFLRA 372 (374)
T ss_pred cccccccccHHHHHHHHHHHHHhcchhhcccChhHHHHHHHHHhCCCHHHHHhHhcCCCCHHHHHHHHHhCCCcChhhc
Confidence 11122346666677666666 4567888899999999999999999999999999999999999999999998887743
No 5
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=100.00 E-value=8.1e-48 Score=362.93 Aligned_cols=357 Identities=21% Similarity=0.310 Sum_probs=283.0
Q ss_pred cEEEECchHHHHHHHHHHHHC--CCcEEEEcCCCCCCCCCcccchhHHHhhc---CchhhhhhccCCeEEEecCCCcccc
Q 014377 11 DLAVVGGGPAGLAVAQQVSEA--GLSVCSIDPSPKLIWPNNYGVWVDEFEAM---DLLDCLDTTWSGAVVHIDDNTKKDL 85 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~--G~~V~liE~~~~~~~~~~~g~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (426)
||+|||||+||+++|+.|++. |++|+|+|+.+.....++|+.|...+... .+.+++.+.|++..+.+++. ...+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~-~~~l 79 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKY-RRKL 79 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcch-hhhc
Confidence 899999999999999999987 99999999988766566788886544332 25567888999988887543 3455
Q ss_pred CCCccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCccccccCCCCCcee
Q 014377 86 DRPYGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRCLVQYDKPYNPGYQ 164 (426)
Q Consensus 86 ~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~~r~~~~~~~~~~~ 164 (426)
..+|..|++..|.+.|.+.+.. + ++ +++|+++ ++++++ +.+|++++|++||+|+|.+|.. ....++|
T Consensus 80 ~~~Y~~I~r~~f~~~l~~~l~~-~--i~~~~~V~~v--~~~~v~--l~dg~~~~A~~VI~A~G~~s~~-----~~~~~~Q 147 (370)
T TIGR01789 80 KTAYRSMTSTRFHEGLLQAFPE-G--VILGRKAVGL--DADGVD--LAPGTRINARSVIDCRGFKPSA-----HLKGGFQ 147 (370)
T ss_pred CCCceEEEHHHHHHHHHHhhcc-c--EEecCEEEEE--eCCEEE--ECCCCEEEeeEEEECCCCCCCc-----cccceee
Confidence 6899999999999999877643 3 44 8888888 344444 4789999999999999998742 2225889
Q ss_pred eEEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeEEEecccCcCCCCCChHHHHHHHHH
Q 014377 165 VAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETSLVARPGVPMKDIQERMVA 244 (426)
Q Consensus 165 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 244 (426)
+++|+++++.. +++++.+++||++.++.++ +.|+|++|++++++++|.|.+...+.++.+++.+++.+
T Consensus 148 ~f~G~~~r~~~-p~~~~~~~lMD~~~~q~~g-----------~~F~Y~lP~~~~~~lvE~T~~s~~~~l~~~~l~~~l~~ 215 (370)
T TIGR01789 148 VFLGREMRLQE-PHGLENPIIMDATVDQLAG-----------YRFVYVLPLGSHDLLIEDTYYADDPLLDRNALSQRIDQ 215 (370)
T ss_pred EEEEEEEEEcC-CCCCCccEEEeeeccCCCC-----------ceEEEECcCCCCeEEEEEEeccCCCCCCHHHHHHHHHH
Confidence 99999999984 5999999999998765332 58999999999999999998888788899999999999
Q ss_pred HHhhcCCccccccccceEeecCCCC--CC---CCCCceeEeeccCCCCCCCCcHHHHHHHHhcHHHHHHHHHhcCCCCCC
Q 014377 245 RLKHLGIKVRSIEEDEHCVIPMGGP--LP---VLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVRSLSSDRSI 319 (426)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~p~~~~--~~---~~~~~v~liGdAa~~~~P~~G~G~~~a~~~a~~la~~i~~~l~~~~~~ 319 (426)
|+...++...++++.+.+++||... ++ ...++++++|||||.++|.+|||++.+++++..|++.+. +++.+..
T Consensus 216 ~~~~~g~~~~~i~~~e~g~iPm~~~~~~~~~~~~~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~la~~~~--~~~~~~~ 293 (370)
T TIGR01789 216 YARANGWQNGTPVRHEQGVLPVLLGGDFSAYQDEVRIVAIAGLRAGLTHPTTGYSLPVAVENADALAAQPD--LSSEQLA 293 (370)
T ss_pred HHHHhCCCceEEEEeeeeEEeeecCCCcccccccCCceeeeecccccccccccccHHHHHHHHHHHHhccC--cCccchh
Confidence 9988888888898889999998432 22 234669999999999999999999999999988887664 1111110
Q ss_pred chhhhHHHHHHhcCCHHHHHHHHHHHhHHHHHhCC-ChhHHHHHHHHhcCCCccccccccCCCCChHHHHHHHHHhhhcC
Q 014377 320 SGHKLSAEVWKDLWPIERRRQREFFCFGMDILLKL-DLPATRRFFDAFFDLEPRYWHGFLSSRLFLPELLVFGLSLFSHA 398 (426)
Q Consensus 320 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~ 398 (426)
... ..|+..++.+..++++++++|+.. .++...++|++||++|++.|.+||++++++.|.+++|
T Consensus 294 ~~~--------~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~f~~~f~l~~~~~~rFl~~~~~~~~~~~i~------- 358 (370)
T TIGR01789 294 AFI--------DSRARRHWSKTGYYRLLNRMLFFAAKPEKRVRVFQRFYGLREGLIERFYAARSNTFDKLRVL------- 358 (370)
T ss_pred hhh--------hHHHHHHHHHhHHHHHHHHHHhccCCchhHHHHHHHHhCCCHHHHHHHHhcCCCHHHHHHHH-------
Confidence 111 245555666777888989888755 4455599999999999999999999999999955444
Q ss_pred ChhhHHHHHhhCChhHHHH
Q 014377 399 SNTSRLEIMAKGTLPLVNM 417 (426)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~ 417 (426)
+++|++|.+++
T Consensus 359 --------~~~p~~p~~~a 369 (370)
T TIGR01789 359 --------WGKPPVPIHSA 369 (370)
T ss_pred --------cCCCCcchhhc
Confidence 56777776654
No 6
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=100.00 E-value=1.1e-35 Score=284.44 Aligned_cols=367 Identities=17% Similarity=0.213 Sum_probs=232.8
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchh--HHHhhcCchh-hhhhccCCeEEEecCCCcccc-
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWV--DEFEAMDLLD-CLDTTWSGAVVHIDDNTKKDL- 85 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~--~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~- 85 (426)
|||+||||||||+++|+.|++.|++|+|+|++. ..++.||... ..++.+++.+ .+...+.+..+..++......
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~--~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERAL--SNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVT 78 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCC--CCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeec
Confidence 799999999999999999999999999999983 2345565543 3466676643 444556665555444321111
Q ss_pred -C--CCc-cccCHHHHHHHHHHHHHhCCcEEEEEEEEEEEEeCCeEEEEEcC------C--cEEEcCEEEECCCCCCccc
Q 014377 86 -D--RPY-GRVNRKLLKSKMLQKCITNGVKFHQAKVIKVIHEESKSLLICND------G--VTIQAAVVLDATGFSRCLV 153 (426)
Q Consensus 86 -~--~~~-~~v~r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~------g--~~i~a~~vV~AdG~~s~~r 153 (426)
. ..| +.++|..|++.|.+++.+.|++++.++|+++..+++++.|++.+ + .+++||+||+|||.+|.++
T Consensus 79 ~~~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v~ 158 (388)
T TIGR02023 79 IPSEDGYVGMVRREVFDSYLRERAQKAGAELIHGLFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSPVA 158 (388)
T ss_pred cCCCCCceEeeeHHHHHHHHHHHHHhCCCEEEeeEEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcHHH
Confidence 1 223 35899999999999999999999855799998888887777653 2 4799999999999999999
Q ss_pred cccCCCC-CceeeEEEEEEEeec--CCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeEEEecccCcCC
Q 014377 154 QYDKPYN-PGYQVAYGILAEVEE--HPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETSLVAR 230 (426)
Q Consensus 154 ~~~~~~~-~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~~ 230 (426)
+.++... ..+...+...+.... ..++.+...++ +.. ...+.+|.|++|.++. +.++.... .
T Consensus 159 r~lg~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~------------~~~p~~y~wv~P~~~~-~~vg~~~~--~ 222 (388)
T TIGR02023 159 KELGLPKNLPRVIAYQERIKLPDDKMAYYEELADVY-YGG------------EVSPDFYGWVFPKGDH-IAVGTGTG--T 222 (388)
T ss_pred HHcCCCCCCcEEEEEEEEecCCchhcccCCCeEEEE-ECC------------CcCCCceEEEeeCCCe-eEEeEEEC--C
Confidence 8765432 111222222222111 11122221111 000 0111379999999854 44544322 1
Q ss_pred CCCChHHHHHHHHHHHhhcCCccccccccceEeecCCCCCCCCCCceeEeeccCCCCCCCCcHHHHHHHHhcHHHHHHHH
Q 014377 231 PGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIV 310 (426)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~liGdAa~~~~P~~G~G~~~a~~~a~~la~~i~ 310 (426)
...+.+++.+.+.+.+. ....+..+.+.+.+|+........++++++|||||+++|++|+|++.||.+|..+|++|.
T Consensus 223 ~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~ip~~~~~~~~~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~ 299 (388)
T TIGR02023 223 HGFDAKQLQANLRRRAG---LDGGQTIRREAAPIPMKPRPRWDFGRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIA 299 (388)
T ss_pred CCCCHHHHHHHHHHhhC---CCCceEeeeeeEeccccccccccCCCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHH
Confidence 22344555555555432 222334455567778743322346899999999999999999999999999999999999
Q ss_pred HhcCCCCCCchhhhHHHHHHhcCCHHHHHHHHHHHhHHHHHhCCChhHHHHHHHHhcCCCccccccccCCCCChHHHHHH
Q 014377 311 RSLSSDRSISGHKLSAEVWKDLWPIERRRQREFFCFGMDILLKLDLPATRRFFDAFFDLEPRYWHGFLSSRLFLPELLVF 390 (426)
Q Consensus 311 ~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~ 390 (426)
++++.++ ...+..|++.|++.+....+..+. .+.+..++++.+..++..+.+.+ +.++... ..
T Consensus 300 ~~l~~~~-~~~L~~Y~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--------~~ 362 (388)
T TIGR02023 300 EYLQNGD-ATDLRHYERKFMKLYGTTFRVLRV-----LQMVYYRSDRRREVFVEMCRDKD---VQRLTFD--------SY 362 (388)
T ss_pred HHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHccCHHHHHHHHHHhcccc---HHHhhHH--------Hh
Confidence 9987543 256788999998766654433211 33334555555555544443322 1111111 23
Q ss_pred HHHhhhcCChhhHHHHHhhCChhH
Q 014377 391 GLSLFSHASNTSRLEIMAKGTLPL 414 (426)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~ 414 (426)
+.+.+...|+-..+++..|.+..+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~ 386 (388)
T TIGR02023 363 MYKQMAPAPWLAQLKIAAKNIGSL 386 (388)
T ss_pred hhhccccCChHHHHHHHHHHHHHh
Confidence 445556666667777777766654
No 7
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=100.00 E-value=2.8e-35 Score=283.74 Aligned_cols=314 Identities=18% Similarity=0.200 Sum_probs=200.5
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchh--HHHhhcCchh-hhhhccCCeEEEecCCCcc
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWV--DEFEAMDLLD-CLDTTWSGAVVHIDDNTKK 83 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~--~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (426)
.+++||+||||||||+++|+.|++.|++|+|+|+++. .++.||... ..++++++.+ .+.+.+....+..+.....
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~--~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v 114 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD--NAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAV 114 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC--CCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEE
Confidence 4579999999999999999999999999999999864 445676643 3456666653 3333333333332222111
Q ss_pred cc-----CCCc-cccCHHHHHHHHHHHHHhCCcEEEEEEEEEEEEe---CCeEEEEEcC---------CcEEEcCEEEEC
Q 014377 84 DL-----DRPY-GRVNRKLLKSKMLQKCITNGVKFHQAKVIKVIHE---ESKSLLICND---------GVTIQAAVVLDA 145 (426)
Q Consensus 84 ~~-----~~~~-~~v~r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~---~~~~~v~~~~---------g~~i~a~~vV~A 145 (426)
.. ..+| +.++|..|++.|.+++.+.|++++..++++++.. ++.+.|++.+ +.+++||+||+|
T Consensus 115 ~~~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgA 194 (450)
T PLN00093 115 DIGKTLKPHEYIGMVRREVLDSFLRERAQSNGATLINGLFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGA 194 (450)
T ss_pred EecccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEeceEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEc
Confidence 11 1233 3589999999999999999999985567777642 2345555422 358999999999
Q ss_pred CCCCCccccccCCCCCceeeEEEEEEEeecCC--CCCCc-eeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeEEE
Q 014377 146 TGFSRCLVQYDKPYNPGYQVAYGILAEVEEHP--FDLDK-MVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFL 222 (426)
Q Consensus 146 dG~~s~~r~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v 222 (426)
||.+|.+++.++.... +...++...+..+. .+.+. ..-+.+. .+..+.+|.|++|.++ .+.|
T Consensus 195 DG~~S~vrr~lg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------------~~~~p~~Y~WifP~g~-~~~V 259 (450)
T PLN00093 195 DGANSRVAKDIDAGDY--DYAIAFQERIKIPDDKMEYYEDLAEMYVG------------DDVSPDFYGWVFPKCD-HVAV 259 (450)
T ss_pred CCcchHHHHHhCCCCc--ceeEEEEEEEeCChhhccccCCeEEEEeC------------CCCCCCceEEEEECCC-cEEE
Confidence 9999999998765432 33344443332111 11000 0001100 0111236899999995 4556
Q ss_pred ecccCcCCCCCChHHHHHHHHHHHhhcCCccccccccceEeecCCCCCCCCCCceeEeeccCCCCCCCCcHHHHHHHHhc
Q 014377 223 EETSLVARPGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAA 302 (426)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~liGdAa~~~~P~~G~G~~~a~~~a 302 (426)
+...... ..+...+.+.+.+.+... ....++.+...+.+|+........++++++|||||+++|++|+|++.||.+|
T Consensus 260 G~g~~~~--~~~~~~~~~~l~~~~~~~-l~~~~~~~~~~~~ip~~~~~~~~~~~vlLvGDAAg~v~P~tGeGI~~Am~sg 336 (450)
T PLN00093 260 GTGTVVN--KPAIKKYQRATRNRAKDK-IAGGKIIRVEAHPIPEHPRPRRVRGRVALVGDAAGYVTKCSGEGIYFAAKSG 336 (450)
T ss_pred EEEEccC--CCChHHHHHHHHHHhhhh-cCCCeEEEEEEEEcccccccceeCCCcEEEeccccCCCccccccHHHHHHHH
Confidence 6532211 123344555555443321 1113344556677787433233568999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCC---CCchhhhHHHHHHhcCCHHHHHH
Q 014377 303 PIVANAIVRSLSSDR---SISGHKLSAEVWKDLWPIERRRQ 340 (426)
Q Consensus 303 ~~la~~i~~~l~~~~---~~~~~~~y~~~~~~~~~~~~~~~ 340 (426)
..+|+.+.++++.++ ....+..|++.|+..+..+.+..
T Consensus 337 ~~AAe~i~~~~~~g~~~~s~~~L~~Y~~~~~~~~g~~~~~~ 377 (450)
T PLN00093 337 RMCAEAIVEGSENGTRMVDEADLREYLRKWDKKYWPTYKVL 377 (450)
T ss_pred HHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999886542 12457789888876555444433
No 8
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=100.00 E-value=3.3e-34 Score=274.08 Aligned_cols=334 Identities=18% Similarity=0.225 Sum_probs=206.2
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchh--HHHhhcCch-hhhhhccCCeEEEecCCCccc--
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWV--DEFEAMDLL-DCLDTTWSGAVVHIDDNTKKD-- 84 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~--~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~-- 84 (426)
+||+||||||||+++|+.|++.|++|+|+|+++. .++.||... ..++++++. +.+.+.+.+..+..+......
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~--~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~ 78 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPD--NAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIG 78 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC--CCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEec
Confidence 6999999999999999999999999999999864 245666543 346666664 333334444333332221111
Q ss_pred ---cCCCc-cccCHHHHHHHHHHHHHhCCcEEEEEEEEEEEEe---CCeEEEEE--cC-----C--cEEEcCEEEECCCC
Q 014377 85 ---LDRPY-GRVNRKLLKSKMLQKCITNGVKFHQAKVIKVIHE---ESKSLLIC--ND-----G--VTIQAAVVLDATGF 148 (426)
Q Consensus 85 ---~~~~~-~~v~r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~---~~~~~v~~--~~-----g--~~i~a~~vV~AdG~ 148 (426)
...+| ..++|..|++.|.+++.+.|++++..++++++.. ++.+.|++ .+ | .+++||+||+|||.
T Consensus 79 ~~~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~ 158 (398)
T TIGR02028 79 RTLKEHEYIGMLRREVLDSFLRRRAADAGATLINGLVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGA 158 (398)
T ss_pred cCCCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcceEEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCc
Confidence 11233 3589999999999999999999984457777532 33444543 22 2 47999999999999
Q ss_pred CCccccccCCCCCceeeEEEEEEEeecCC--CCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeEEEeccc
Q 014377 149 SRCLVQYDKPYNPGYQVAYGILAEVEEHP--FDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETS 226 (426)
Q Consensus 149 ~s~~r~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~ 226 (426)
+|.+++.++.........+...+..+... +..+. .-+.+ +....+.+|.|++|.++ .+.|+...
T Consensus 159 ~S~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------------g~~~~p~gY~WifP~~~-~~~VG~g~ 224 (398)
T TIGR02028 159 NSRVAKEIDAGDYSYAIAFQERIRLPDEKMAYYDDL-AEMYV------------GDDVSPDFYGWVFPKCD-HVAVGTGT 224 (398)
T ss_pred chHHHHHhCCCCcceEEEEEEEeeCChhhcccCCCe-EEEEe------------CCCCCCCceEEEEECCC-eEEEEEEe
Confidence 99999987654321111221122222110 11111 10110 00112236999999995 44566543
Q ss_pred CcCCCCCChHHHHHHHHHHHhhcCCccccccccceEeecCCCCCCCCCCceeEeeccCCCCCCCCcHHHHHHHHhcHHHH
Q 014377 227 LVARPGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVA 306 (426)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~liGdAa~~~~P~~G~G~~~a~~~a~~la 306 (426)
.. .....+.+.+.+....... ....++.+...+.+|+........+|++++|||||+++|++|+|++.||.+|..+|
T Consensus 225 ~~--~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~ip~~~~~~~~~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa 301 (398)
T TIGR02028 225 VA--AKPEIKRLQSGIRARAAGK-VAGGRIIRVEAHPIPEHPRPRRVVGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCA 301 (398)
T ss_pred CC--CCccHHHHHHhhhhhhhhc-cCCCcEEEEEEEeccccccccEECCCEEEEEcCCCCCCcccccchHHHHHHHHHHH
Confidence 21 1123334444443332211 11123344556677875332335689999999999999999999999999999999
Q ss_pred HHHHHhcCCCC---CCchhhhHHHHHHhcCCHHHHHHHHHHHhHHHHHhCCChhHHHHHHHHhc
Q 014377 307 NAIVRSLSSDR---SISGHKLSAEVWKDLWPIERRRQREFFCFGMDILLKLDLPATRRFFDAFF 367 (426)
Q Consensus 307 ~~i~~~l~~~~---~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 367 (426)
+++.++++.++ ....+..|++.|++.+..+.+....+ .+++.. +++.+..+++.+.
T Consensus 302 ~~i~~~~~~~~~~~~~~~l~~Y~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~ 360 (398)
T TIGR02028 302 EAIVEESRLGGAVTEEGDLAGYLRRWDKEYRPTYRVLDLL----QRVFYR-SNAGREAFVEMCA 360 (398)
T ss_pred HHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHcC-CcHHHHHHHHHhc
Confidence 99999886553 22457789988887665554444333 223333 5666666666553
No 9
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=100.00 E-value=2.9e-34 Score=274.75 Aligned_cols=322 Identities=20% Similarity=0.199 Sum_probs=217.8
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccch--hHHHhhcCchhh--hhhccCCeEEEecCCCcc
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVW--VDEFEAMDLLDC--LDTTWSGAVVHIDDNTKK 83 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~--~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~ 83 (426)
++|||+||||||||+++|+.|++.|++|+|+|+++.++.+..|+.. ...++.+..... +.....+..+++.. ...
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~-~~~ 80 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPG-EKV 80 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecC-Cce
Confidence 5799999999999999999999999999999999999888877332 233555443321 33334444454442 222
Q ss_pred ccCC--C-ccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEE-cCCcEEEcCEEEECCCCCCccccccCC
Q 014377 84 DLDR--P-YGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLIC-NDGVTIQAAVVLDATGFSRCLVQYDKP 158 (426)
Q Consensus 84 ~~~~--~-~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~-~~g~~i~a~~vV~AdG~~s~~r~~~~~ 158 (426)
.+.. + ...++|..|++.|.+++++.|++++ ++++.++..+++++.+.. .++.+++||+||+|||.+|.+++.++.
T Consensus 81 ~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l~~~lg~ 160 (396)
T COG0644 81 AIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSALARKLGL 160 (396)
T ss_pred EEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchHHHHHhCC
Confidence 2221 2 2358999999999999999999999 999999998887665544 444789999999999999999988776
Q ss_pred CCCceeeEEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeEEEecccCcCCCCCChH-H
Q 014377 159 YNPGYQVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETSLVARPGVPMK-D 237 (426)
Q Consensus 159 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~~~~~~~~-~ 237 (426)
.....+.......+....+.+.+...+..+... ....+|.|++|.+++.+.++.......+..... +
T Consensus 161 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~------------~~~~Gy~wifP~~~~~~~VG~g~~~~~~~~~~~~~ 228 (396)
T COG0644 161 KDRKPEDYAIGVKEVIEVPDDGDVEEFLYGPLD------------VGPGGYGWIFPLGDGHANVGIGVLLDDPSLSPFLE 228 (396)
T ss_pred CCCChhheeEEeEEEEecCCCCceEEEEecCCc------------cCCCceEEEEECCCceEEEEEEEecCCcCCCchHH
Confidence 622112122222222222222222222211111 122589999999999888777644333222222 3
Q ss_pred HHHHHHHHHhhcCCc-cccccccceEeecCCCCCCC--CCCceeEeeccCCCCCCCCcHHHHHHHHhcHHHHHHHHHhcC
Q 014377 238 IQERMVARLKHLGIK-VRSIEEDEHCVIPMGGPLPV--LPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVRSLS 314 (426)
Q Consensus 238 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~--~~~~v~liGdAa~~~~P~~G~G~~~a~~~a~~la~~i~~~l~ 314 (426)
..+++.+........ ..++.+...+.+|.+..... ..++++++||||++++|++|.|+..||.+|..+|+.|.++++
T Consensus 229 ~l~~f~~~~~~~~~~~~~~~~~~~~~~ip~~g~~~~~~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~ 308 (396)
T COG0644 229 LLERFKEHPAIRKLLLGGKILEYAAGGIPEGGPASRPLVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEALE 308 (396)
T ss_pred HHHHHHhCcccchhccCCceEEEeeeecccCCcCCCccccCCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHHHHH
Confidence 334443322111111 13556677888998755443 568999999999999999999999999999999999999886
Q ss_pred CCCCCchhhhHHHHHHhcCCHHHHHHHHHH
Q 014377 315 SDRSISGHKLSAEVWKDLWPIERRRQREFF 344 (426)
Q Consensus 315 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 344 (426)
.+ ...+..|++.|++.+......+....
T Consensus 309 ~~--~~~l~~Y~~~~~~~~~~~~~~~~~~~ 336 (396)
T COG0644 309 GG--EEALAEYERLLRKSLAREDLKSLRLL 336 (396)
T ss_pred cC--hhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 55 24567799888877765555443333
No 10
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=100.00 E-value=2.2e-33 Score=268.24 Aligned_cols=304 Identities=20% Similarity=0.234 Sum_probs=197.4
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccc--h---hHHHhhcCc-hhhhhhcc-CCeEEEecCCC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGV--W---VDEFEAMDL-LDCLDTTW-SGAVVHIDDNT 81 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~--~---~~~l~~~~~-~~~~~~~~-~~~~~~~~~~~ 81 (426)
.+||+||||||+|+++|+.|++.|++|+|||+.+....+...+. . ...|+++|+ +.+..... +..........
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 57999999999999999999999999999999832212221222 2 235788998 55544222 11111111111
Q ss_pred ---------ccccCCCccccCHHHHHHHHHHHHHhC-CcEEE-EEEEEEEEEeCCeEEEEEc-CCcEEEcCEEEECCCCC
Q 014377 82 ---------KKDLDRPYGRVNRKLLKSKMLQKCITN-GVKFH-QAKVIKVIHEESKSLLICN-DGVTIQAAVVLDATGFS 149 (426)
Q Consensus 82 ---------~~~~~~~~~~v~r~~l~~~L~~~~~~~-gv~~~-~~~v~~i~~~~~~~~v~~~-~g~~i~a~~vV~AdG~~ 149 (426)
..........+.+..|.+.|.+++.+. +++++ +++|+.++.+++.+++++. ||++++||+||+|||.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~ 161 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGAN 161 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCc
Confidence 011122233589999999999999885 49999 9999999999988888888 99999999999999999
Q ss_pred CccccccC-CCCCceee-EEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCe---EEEec
Q 014377 150 RCLVQYDK-PYNPGYQV-AYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNR---IFLEE 224 (426)
Q Consensus 150 s~~r~~~~-~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~---~~v~~ 224 (426)
|.+|+..+ ....+..+ ...+...+.. ..+.....+..+.. .+.+.++|..++. +|...
T Consensus 162 S~vR~~~~~~~~~~~~y~~~~l~~~~~~-~~~~~~~~~~~~~~----------------~~~~~~~p~~~~~~~~~~~~~ 224 (387)
T COG0654 162 SAVRRAAGIAEFSGRDYGQTALVANVEP-EEPHEGRAGERFTH----------------AGPFALLPLPDNRSSVVWSLP 224 (387)
T ss_pred hHHHHhcCCCCccCCCCCceEEEEEeec-CCCCCCeEEEEecC----------------CCceEEEecCCCceeEEEECC
Confidence 99999887 33333222 2233333332 12222222222211 2446777887432 22222
Q ss_pred ccCc-CCCCCChHHHHHHHHHHHhhcCCccccc-cccceEeecCCCCCC--CCCCceeEeeccCCCCCCCCcHHHHHHHH
Q 014377 225 TSLV-ARPGVPMKDIQERMVARLKHLGIKVRSI-EEDEHCVIPMGGPLP--VLPQRVVGIGGTAGMVHPSTGYMVARTLA 300 (426)
Q Consensus 225 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~--~~~~~v~liGdAa~~~~P~~G~G~~~a~~ 300 (426)
.... .....+.+.+.+.+.+.++.... ...+ .......+|+..... .+.+|++|+|||||.++|++|||+|.|++
T Consensus 225 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~pl~~~~a~~~~~~Rv~LiGDAAH~~~P~~gQG~nlgl~ 303 (387)
T COG0654 225 PGPAEDLQGLSDEEFLRELQRRLGERDP-LGRVTLVSSRSAFPLSLRVAERYRRGRVVLIGDAAHAMHPLAGQGANLALE 303 (387)
T ss_pred hhhHHHHhcCCHHHHHHHHHHhcCcccc-cceEEEccccccccccchhhhheecCcEEEEeeccccCCCccccchhhhhh
Confidence 1111 11334556666666666554321 2211 334455667653332 35689999999999999999999999999
Q ss_pred hcHHHHHHHHHhcCCCCCCchhhhHHHHHH
Q 014377 301 AAPIVANAIVRSLSSDRSISGHKLSAEVWK 330 (426)
Q Consensus 301 ~a~~la~~i~~~l~~~~~~~~~~~y~~~~~ 330 (426)
|+..||+.|.+....+.+...++.|++.++
T Consensus 304 Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~ 333 (387)
T COG0654 304 DAAALAEALAAAPRPGADAAALAAYEARRR 333 (387)
T ss_pred hHHHHHHHHHHHhhcCccHHHHHHHHHhhh
Confidence 999999999998874332466788886543
No 11
>PRK08013 oxidoreductase; Provisional
Probab=100.00 E-value=3.8e-32 Score=261.18 Aligned_cols=303 Identities=16% Similarity=0.188 Sum_probs=186.7
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCC-------Ccccch---hHHHhhcCchhhhhh--ccCCeEE
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWP-------NNYGVW---VDEFEAMDLLDCLDT--TWSGAVV 75 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~-------~~~g~~---~~~l~~~~~~~~~~~--~~~~~~~ 75 (426)
+++||+||||||+|+++|+.|++.|++|+|+|+.+.+... +..+.. ...|+++|+.+.+.. ..+...+
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~ 81 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGM 81 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEE
Confidence 3589999999999999999999999999999998763211 111112 234788888665432 1121112
Q ss_pred EecCCC---cc-----ccCCCc--cccCHHHHHHHHHHHHHh-CCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEE
Q 014377 76 HIDDNT---KK-----DLDRPY--GRVNRKLLKSKMLQKCIT-NGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVL 143 (426)
Q Consensus 76 ~~~~~~---~~-----~~~~~~--~~v~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV 143 (426)
.+.+.. .. ....++ ..++|..|++.|.+.+.+ .|++++ +++|++++.+++.+.+++.+|++++||+||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvV 161 (400)
T PRK08013 82 EVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVV 161 (400)
T ss_pred EEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEE
Confidence 111110 00 111222 248999999999999988 589998 999999998888899999999999999999
Q ss_pred ECCCCCCccccccCCCCCcee-eEEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCe-EE
Q 014377 144 DATGFSRCLVQYDKPYNPGYQ-VAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNR-IF 221 (426)
Q Consensus 144 ~AdG~~s~~r~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~-~~ 221 (426)
+|||.+|.+|+.++....+.. ....+...++.. .+........|.. .++++.+|..++. ..
T Consensus 162 gADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~----------------~g~~~~~p~~~~~~~~ 224 (400)
T PRK08013 162 GADGANSWLRNKADIPLTFWDYQHHALVATIRTE-EPHDAVARQVFHG----------------DGILAFLPLSDPHLCS 224 (400)
T ss_pred EeCCCCcHHHHHcCCCccccccCcEEEEEEEecc-CCCCCEEEEEEcC----------------CCCEEEEECCCCCeEE
Confidence 999999999998765443221 122233333211 1111111111110 2456777876543 21
Q ss_pred EecccCc---C-CCCCChHHHHHHHHHHHhhcCCccccccccceEeecCCCCC-CC-CCCceeEeeccCCCCCCCCcHHH
Q 014377 222 LEETSLV---A-RPGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPMGGPL-PV-LPQRVVGIGGTAGMVHPSTGYMV 295 (426)
Q Consensus 222 v~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~-~~~~v~liGdAa~~~~P~~G~G~ 295 (426)
+.-.... . ....+.+++.+.+...++.. ....++ ......+|+.... +. +.+|++|+|||||.++|+.|||+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-l~~~~~-~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~ 302 (400)
T PRK08013 225 IVWSLSPEEAQRMQQAPEEEFNRALAIAFDNR-LGLCEL-ESERQVFPLTGRYARQFAAHRLALVGDAAHTIHPLAGQGV 302 (400)
T ss_pred EEEEcCHHHHHHHHcCCHHHHHHHHHHHHhHh-hCceEe-cCCccEEecceeecccccCCcEEEEechhhcCCccccCch
Confidence 1111000 0 01223344444444333211 000111 1122344543322 22 46999999999999999999999
Q ss_pred HHHHHhcHHHHHHHHHhcCCCCCC---chhhhHHHHH
Q 014377 296 ARTLAAAPIVANAIVRSLSSDRSI---SGHKLSAEVW 329 (426)
Q Consensus 296 ~~a~~~a~~la~~i~~~l~~~~~~---~~~~~y~~~~ 329 (426)
|+|++||..|++.|...+..+... ..++.|++.+
T Consensus 303 n~gi~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R 339 (400)
T PRK08013 303 NLGFMDAAELIAELRRLHRQGKDIGQHLYLRRYERSR 339 (400)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 999999999999998776443322 2477888654
No 12
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=100.00 E-value=7.4e-32 Score=259.01 Aligned_cols=307 Identities=19% Similarity=0.240 Sum_probs=192.6
Q ss_pred CCCCCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCC------Ccccch---hHHHhhcCchhhhhh--c--c
Q 014377 4 PSKGLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWP------NNYGVW---VDEFEAMDLLDCLDT--T--W 70 (426)
Q Consensus 4 ~~~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~------~~~g~~---~~~l~~~~~~~~~~~--~--~ 70 (426)
|++...+||+||||||+|+++|+.|+++|++|+|||+.+.+.+. +..+.. ...++.+|+.+.+.. . +
T Consensus 1 ~~~~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~ 80 (392)
T PRK08773 1 MSRRSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPY 80 (392)
T ss_pred CCCCCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcc
Confidence 34567899999999999999999999999999999998754321 111222 234678888665432 1 1
Q ss_pred CCeEEEecCCC-ccc-----c-CCCcc-ccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCE
Q 014377 71 SGAVVHIDDNT-KKD-----L-DRPYG-RVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAV 141 (426)
Q Consensus 71 ~~~~~~~~~~~-~~~-----~-~~~~~-~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~ 141 (426)
....+...... ... . ...++ .+++..|.+.|.+.+.+.|++++ +++|++++.++++++|++.+|++++||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~ 160 (392)
T PRK08773 81 RRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAAL 160 (392)
T ss_pred cEEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCE
Confidence 21112111110 000 1 11222 47899999999999998999999 9999999988888889888888999999
Q ss_pred EEECCCCCCccccccCCCCCceee-EEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeE
Q 014377 142 VLDATGFSRCLVQYDKPYNPGYQV-AYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRI 220 (426)
Q Consensus 142 vV~AdG~~s~~r~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~ 220 (426)
||+|||.+|.+++.++........ ..++...++.. .+.....+..+.. .+.++++|..++..
T Consensus 161 vV~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~----------------~g~~~~lP~~~~~~ 223 (392)
T PRK08773 161 AIAADGAASTLRELAGLPVSRHDYAQRGVVAFVDTE-HPHQATAWQRFLP----------------TGPLALLPFADGRS 223 (392)
T ss_pred EEEecCCCchHHHhhcCCceEEEeccEEEEEEEEcc-CCCCCEEEEEeCC----------------CCcEEEEECCCCce
Confidence 999999999999876554332111 23443333321 1111111211110 24466778776654
Q ss_pred EEecccCc---C-CCCCChHHHHHHHHHHHhhcCCccccccccceEeecCCCCC-CC-CCCceeEeeccCCCCCCCCcHH
Q 014377 221 FLEETSLV---A-RPGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPMGGPL-PV-LPQRVVGIGGTAGMVHPSTGYM 294 (426)
Q Consensus 221 ~v~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~-~~~~v~liGdAa~~~~P~~G~G 294 (426)
.+.-.... . ....+.+++.+.+.+.+......+... .....+|+.... .. ..+|++|+|||||.++|+.|||
T Consensus 224 ~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG 301 (392)
T PRK08773 224 SIVWTLPDAEAERVLALDEAAFSRELTQAFAARLGEVRVA--SPRTAFPLRRQLVQQYVSGRVLTLGDAAHVVHPLAGQG 301 (392)
T ss_pred EEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhhcCeEec--CCccEeechhhhhhhhcCCcEEEEechhhcCCCchhch
Confidence 32211100 0 012234455555555554432222111 122345543222 22 4689999999999999999999
Q ss_pred HHHHHHhcHHHHHHHHHhcCCCCC---CchhhhHHHHH
Q 014377 295 VARTLAAAPIVANAIVRSLSSDRS---ISGHKLSAEVW 329 (426)
Q Consensus 295 ~~~a~~~a~~la~~i~~~l~~~~~---~~~~~~y~~~~ 329 (426)
+|.|++||..||+.|.+.++.+.. ...+..|++.+
T Consensus 302 ~n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~y~~~R 339 (392)
T PRK08773 302 VNLGLRDVAALQQLVRQAHARRADWAAPHRLQRWARTR 339 (392)
T ss_pred hhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 999999999999999987654322 13466777553
No 13
>PRK06184 hypothetical protein; Provisional
Probab=100.00 E-value=7.6e-32 Score=266.39 Aligned_cols=305 Identities=17% Similarity=0.227 Sum_probs=192.4
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCC-CCcccchh---HHHhhcCchhhhhh-c--cCCeEEEecCC
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIW-PNNYGVWV---DEFEAMDLLDCLDT-T--WSGAVVHIDDN 80 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~-~~~~g~~~---~~l~~~~~~~~~~~-~--~~~~~~~~~~~ 80 (426)
+++||+||||||+|+++|+.|++.|++|+|||+.+.+.. ++..+.+. +.|+.+|+.+.+.. . ++...++....
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 81 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDG 81 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCc
Confidence 468999999999999999999999999999999876532 23333332 34778887654332 1 12222211111
Q ss_pred C----------ccccCCCc---cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEE---cCCcEEEcCEEE
Q 014377 81 T----------KKDLDRPY---GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLIC---NDGVTIQAAVVL 143 (426)
Q Consensus 81 ~----------~~~~~~~~---~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~---~~g~~i~a~~vV 143 (426)
. ......++ ..+++..+++.|.+.+.+.|++++ +++|++++++++++++++ .++++++||+||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vV 161 (502)
T PRK06184 82 SVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLV 161 (502)
T ss_pred eEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEE
Confidence 0 00011122 247899999999999998899999 999999998888887776 566789999999
Q ss_pred ECCCCCCccccccCCCCCceeeE--EEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeE-
Q 014377 144 DATGFSRCLVQYDKPYNPGYQVA--YGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRI- 220 (426)
Q Consensus 144 ~AdG~~s~~r~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~- 220 (426)
+|||.+|.+|+.++....+.... ..+.........+.+ .+..|.... .+++..+|..++..
T Consensus 162 gADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--------------~~~~~~~p~~~~~~~ 225 (502)
T PRK06184 162 GADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTGLDRD--AWHQWPDGD--------------MGMIALCPLPGTDLF 225 (502)
T ss_pred ECCCCchHHHHhCCCCcccCcCCCceEEEEEEEeecCCCc--ceEEccCCC--------------CcEEEEEEccCCCeE
Confidence 99999999999887655443221 222222221111111 111111100 14455667654422
Q ss_pred EEeccc-CcCCCCCChHHHHHHHHHHHhhcCCccccccccceEeecCCCCC-CC-CCCceeEeeccCCCCCCCCcHHHHH
Q 014377 221 FLEETS-LVARPGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPMGGPL-PV-LPQRVVGIGGTAGMVHPSTGYMVAR 297 (426)
Q Consensus 221 ~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~-~~~~v~liGdAa~~~~P~~G~G~~~ 297 (426)
.+.... .......+.+.+.+.+.+...........+. ....+++.... +. ..+||+|+|||||.++|++|||+|+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~ 303 (502)
T PRK06184 226 QIQAPLPPGGEPDLSADGLTALLAERTGRTDIRLHSVT--WASAFRMNARLADRYRVGRVFLAGDAAHVHPPAGGQGLNT 303 (502)
T ss_pred EEEEEcCCCccCCCCHHHHHHHHHHhcCCCCcceeeee--eeeccccceeEhhhhcCCcEEEeccccccCCCcccccccc
Confidence 221111 1112334566677766665542222221111 12223322221 22 3589999999999999999999999
Q ss_pred HHHhcHHHHHHHHHhcCCCCCCchhhhHHHHHHh
Q 014377 298 TLAAAPIVANAIVRSLSSDRSISGHKLSAEVWKD 331 (426)
Q Consensus 298 a~~~a~~la~~i~~~l~~~~~~~~~~~y~~~~~~ 331 (426)
+|+||..||+.|+..+++ .....++.|++.++.
T Consensus 304 gi~DA~~LawkLa~vl~g-~~~~lL~~Ye~eR~p 336 (502)
T PRK06184 304 SVQDAYNLGWKLAAVLAG-APEALLDTYEEERRP 336 (502)
T ss_pred hHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHH
Confidence 999999999999988876 444568889877654
No 14
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=1e-31 Score=257.83 Aligned_cols=308 Identities=15% Similarity=0.136 Sum_probs=194.1
Q ss_pred CCCCCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchh---HHHhhcCchhhhhh-c--cCCeEEEe
Q 014377 4 PSKGLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWV---DEFEAMDLLDCLDT-T--WSGAVVHI 77 (426)
Q Consensus 4 ~~~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~---~~l~~~~~~~~~~~-~--~~~~~~~~ 77 (426)
.|++..+||+||||||+|+++|+.|++.|++|+|||+.+.....+.++.+. ..|+.+|+.+.+.. . +....+..
T Consensus 2 ~~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~ 81 (388)
T PRK07494 2 LMEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVD 81 (388)
T ss_pred CCCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEe
Confidence 355677999999999999999999999999999999987653334444332 34677787654432 1 22222222
Q ss_pred cCCCcc-----c------cCCCcc-ccCHHHHHHHHHHHHHhC-CcEEEEEEEEEEEEeCCeEEEEEcCCcEEEcCEEEE
Q 014377 78 DDNTKK-----D------LDRPYG-RVNRKLLKSKMLQKCITN-GVKFHQAKVIKVIHEESKSLLICNDGVTIQAAVVLD 144 (426)
Q Consensus 78 ~~~~~~-----~------~~~~~~-~v~r~~l~~~L~~~~~~~-gv~~~~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~ 144 (426)
.+.... . ...+++ .+++..+.+.|.+++.+. ++...+++|++++.+++++.|++++|++++||+||+
T Consensus 82 ~~g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~ 161 (388)
T PRK07494 82 ATGRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPREDEVTVTLADGTTLSARLVVG 161 (388)
T ss_pred CCCCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEE
Confidence 221100 0 012333 489999999999999874 566449999999988888999999999999999999
Q ss_pred CCCCCCccccccCCCCCcee-eEEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeEEEe
Q 014377 145 ATGFSRCLVQYDKPYNPGYQ-VAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLE 223 (426)
Q Consensus 145 AdG~~s~~r~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~ 223 (426)
|||.+|.+|+.++....... ...++.+.+... .+........+ . ..++++.+|..+++..+.
T Consensus 162 AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~-~---------------~~g~~~~~Pl~~~~~~~v 224 (388)
T PRK07494 162 ADGRNSPVREAAGIGVRTWSYPQKALVLNFTHS-RPHQNVSTEFH-T---------------EGGPFTQVPLPGRRSSLV 224 (388)
T ss_pred ecCCCchhHHhcCCCceecCCCCEEEEEEEecc-CCCCCEEEEEe-C---------------CCCcEEEEECCCCcEEEE
Confidence 99999999988755432111 122333333321 11111111110 0 025566778776553221
Q ss_pred ---cccCcC-CCCCChHHHHHHHHHHHhhcCCccccccccceEeecCCCCCC-C-CCCceeEeeccCCCCCCCCcHHHHH
Q 014377 224 ---ETSLVA-RPGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPMGGPLP-V-LPQRVVGIGGTAGMVHPSTGYMVAR 297 (426)
Q Consensus 224 ---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~-~~~~v~liGdAa~~~~P~~G~G~~~ 297 (426)
...... ....+.+++.+.+.+.+....-... .......+|+..... . ..+|++++|||||.++|++|||+|+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~ 302 (388)
T PRK07494 225 WVVRPAEAERLLALSDAALSAAIEERMQSMLGKLT--LEPGRQAWPLSGQVAHRFAAGRTALVGEAAHVFPPIGAQGLNL 302 (388)
T ss_pred EECCHHHHHHHHcCCHHHHHHHHHHHHhhhcCCeE--EccCCcEeechHHHHHhhccCceEEEEhhhhcCCchhhcccch
Confidence 111100 1233556677777666554321111 122345566543322 2 4689999999999999999999999
Q ss_pred HHHhcHHHHHHHHHhcCCCCCCchhhhHHHHHH
Q 014377 298 TLAAAPIVANAIVRSLSSDRSISGHKLSAEVWK 330 (426)
Q Consensus 298 a~~~a~~la~~i~~~l~~~~~~~~~~~y~~~~~ 330 (426)
|++||..|++.|.+...+......+..|++.++
T Consensus 303 ~l~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~ 335 (388)
T PRK07494 303 GLRDVATLVEIVEDRPEDPGSAAVLAAYDRARR 335 (388)
T ss_pred hHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 999999999999874332212245677876543
No 15
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=1.4e-31 Score=258.19 Aligned_cols=303 Identities=16% Similarity=0.192 Sum_probs=185.7
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCC---------CCCcccch---hHHHhhcCchhhhhh--ccCCeE
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLI---------WPNNYGVW---VDEFEAMDLLDCLDT--TWSGAV 74 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~---------~~~~~g~~---~~~l~~~~~~~~~~~--~~~~~~ 74 (426)
.+||+||||||+|+++|+.|++.|++|+|||+.+... .++..+.. ...|+.+|+.+.+.. ..+...
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 81 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSE 81 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcccee
Confidence 4899999999999999999999999999999986310 11111112 234778888665432 122222
Q ss_pred EEecCCCc-c-------ccC-CCcc-ccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEE
Q 014377 75 VHIDDNTK-K-------DLD-RPYG-RVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVL 143 (426)
Q Consensus 75 ~~~~~~~~-~-------~~~-~~~~-~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV 143 (426)
+...+... . ... ..++ .+++..+.+.|.+.+.+.|++++ ++++++++.+++++.|++.+|++++||+||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV 161 (405)
T PRK05714 82 MQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVV 161 (405)
T ss_pred EEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEE
Confidence 22211111 0 011 1122 47899999999999988899998 999999998888888999999899999999
Q ss_pred ECCCCCCccccccCCCCCceee-EEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCC--e-
Q 014377 144 DATGFSRCLVQYDKPYNPGYQV-AYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSN--R- 219 (426)
Q Consensus 144 ~AdG~~s~~r~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~--~- 219 (426)
+|||.+|.+|+.++.....+.+ ...+...+.. +.+.....++.+.. .+.++.+|..++ .
T Consensus 162 gAdG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----------------~g~~~~~P~~~~~~~~ 224 (405)
T PRK05714 162 AADGANSAVRRLAGCATREWDYLHHAIVTSVRC-SEPHRATAWQRFTD----------------DGPLAFLPLERDGDEH 224 (405)
T ss_pred EecCCCchhHHhcCCCcccccCCceEEEEEEEc-CCCCCCEEEEEcCC----------------CCCeEEeeCCCCCCCC
Confidence 9999999999987654332221 2222222221 11111111221111 144666777532 1
Q ss_pred -EEEecccCcC---C-CCCChHHHHHHHHHHHhhcCCccccccccceEeecCCCC-CCC-CCCceeEeeccCCCCCCCCc
Q 014377 220 -IFLEETSLVA---R-PGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPMGGP-LPV-LPQRVVGIGGTAGMVHPSTG 292 (426)
Q Consensus 220 -~~v~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~-~~~~v~liGdAa~~~~P~~G 292 (426)
..+.-..... . ...+.+++.+.+.+.+......... ......+|+... .+. ..+|++|+|||||.++|+.|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~rv~LlGDAAH~~~P~~G 302 (405)
T PRK05714 225 WCSIVWSTTPEEAERLMALDDDAFCAALERAFEGRLGEVLS--ADPRLCVPLRQRHAKRYVEPGLALIGDAAHTIHPLAG 302 (405)
T ss_pred eEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHhCCcee--cCCccEEecceeehhhhccCCEEEEEeccccCCCccc
Confidence 1111110000 0 1123444555555444332111111 112234554432 223 45899999999999999999
Q ss_pred HHHHHHHHhcHHHHHHHHHhcCCCCC---CchhhhHHHHHH
Q 014377 293 YMVARTLAAAPIVANAIVRSLSSDRS---ISGHKLSAEVWK 330 (426)
Q Consensus 293 ~G~~~a~~~a~~la~~i~~~l~~~~~---~~~~~~y~~~~~ 330 (426)
||+|+|++||..|++.|.+.+..+++ ...+..|++.++
T Consensus 303 QG~n~al~DA~~La~~L~~~~~~g~~~~~~~~L~~Ye~~R~ 343 (405)
T PRK05714 303 QGVNLGFLDAAVLAEVLLHAAERGERLADVRVLSRFERRRM 343 (405)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 99999999999999999876543321 246778886644
No 16
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=100.00 E-value=4.1e-31 Score=254.74 Aligned_cols=304 Identities=17% Similarity=0.202 Sum_probs=187.5
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCC-CCCC--C---CCcccchh---HHHhhcCchhhhhh--ccC--Ce
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPS-PKLI--W---PNNYGVWV---DEFEAMDLLDCLDT--TWS--GA 73 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~-~~~~--~---~~~~g~~~---~~l~~~~~~~~~~~--~~~--~~ 73 (426)
|..+||+||||||+|+++|+.|++.|++|+|+|+. +... . .+..+... ..|+++|+.+.+.. ..+ ..
T Consensus 2 m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~ 81 (405)
T PRK08850 2 MQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAM 81 (405)
T ss_pred CCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEE
Confidence 34689999999999999999999999999999996 3211 0 11222222 34788888765532 112 22
Q ss_pred EEEecCC-Cc-----ccc-CCCcc-ccCHHHHHHHHHHHHHh-CCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEE
Q 014377 74 VVHIDDN-TK-----KDL-DRPYG-RVNRKLLKSKMLQKCIT-NGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVL 143 (426)
Q Consensus 74 ~~~~~~~-~~-----~~~-~~~~~-~v~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV 143 (426)
.+..... .. ... ..+++ .+.+..|.+.|.+++.+ .|++++ +++|++++.+++.+.|++.+|++++||+||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvI 161 (405)
T PRK08850 82 EVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVV 161 (405)
T ss_pred EEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEE
Confidence 2221110 00 011 11233 36888999999999877 579998 999999998888889999999999999999
Q ss_pred ECCCCCCccccccCCCCCceee-EEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCC-eEE
Q 014377 144 DATGFSRCLVQYDKPYNPGYQV-AYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSN-RIF 221 (426)
Q Consensus 144 ~AdG~~s~~r~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~-~~~ 221 (426)
+|||.+|.+|+.++....+..+ ..++...+... ...+....+.|.. .+.+..+|..++ ...
T Consensus 162 gADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~----------------~g~~~~lp~~~~~~~~ 224 (405)
T PRK08850 162 GADGANSWLRRQMDIPLTHWDYGHSALVANVRTV-DPHNSVARQIFTP----------------QGPLAFLPMSEPNMSS 224 (405)
T ss_pred EeCCCCChhHHHcCCCeeEEeeccEEEEEEEEcc-CCCCCEEEEEEcC----------------CCceEEEECCCCCeEE
Confidence 9999999999987665432221 22233333221 1112111121110 244666788754 322
Q ss_pred E---ecccCcCC-CCCChHHHHHHHHHHHhhcCCccccccccceEeecCCCCC-C-CCCCceeEeeccCCCCCCCCcHHH
Q 014377 222 L---EETSLVAR-PGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPMGGPL-P-VLPQRVVGIGGTAGMVHPSTGYMV 295 (426)
Q Consensus 222 v---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~-~~~~~v~liGdAa~~~~P~~G~G~ 295 (426)
+ ........ ...+.+++.+.+.+.+...-... ++ ......+|+.... + ...+|++++|||||.++|..|||+
T Consensus 225 ~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~-~~~~~~~pl~~~~~~~~~~~rv~LiGDAAH~~~P~~GQG~ 302 (405)
T PRK08850 225 IVWSTEPLRAEALLAMSDEQFNKALTAEFDNRLGLC-EV-VGERQAFPLKMRYARDFVRERVALVGDAAHTIHPLAGQGV 302 (405)
T ss_pred EEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhhCcE-EE-cccccEEecceeeccccccCcEEEEEhhhhcCCccccccH
Confidence 2 11100000 12234455555555443211111 11 1122345653322 2 246899999999999999999999
Q ss_pred HHHHHhcHHHHHHHHHhcCCCCC---CchhhhHHHHH
Q 014377 296 ARTLAAAPIVANAIVRSLSSDRS---ISGHKLSAEVW 329 (426)
Q Consensus 296 ~~a~~~a~~la~~i~~~l~~~~~---~~~~~~y~~~~ 329 (426)
|+|++||..|+++|...+..+.+ ...++.|++.+
T Consensus 303 n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R 339 (405)
T PRK08850 303 NLGLLDAASLAQEILALWQQGRDIGLKRNLRGYERWR 339 (405)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 99999999999999877643322 24567787553
No 17
>PRK10015 oxidoreductase; Provisional
Probab=100.00 E-value=1.6e-31 Score=257.42 Aligned_cols=357 Identities=16% Similarity=0.146 Sum_probs=212.3
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccch--hHHHhhc--Cch--hhhhhccCCeEEEe-cCC
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVW--VDEFEAM--DLL--DCLDTTWSGAVVHI-DDN 80 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~--~~~l~~~--~~~--~~~~~~~~~~~~~~-~~~ 80 (426)
.+||||||||||||+++|+.|++.|++|+||||.+.++.+..||.. ...++.+ ++. ..+........+.+ ...
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~ 83 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEE 83 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCC
Confidence 4699999999999999999999999999999999877655545432 1112222 111 11111111111111 110
Q ss_pred Cc-------cc--c-CCCccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCC
Q 014377 81 TK-------KD--L-DRPYGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFS 149 (426)
Q Consensus 81 ~~-------~~--~-~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~ 149 (426)
.. .. . ......+.|..|++.|.+++.+.|++++ +++|+++..+++++.+...++.+++|++||+|||.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~~ 163 (429)
T PRK10015 84 SAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVN 163 (429)
T ss_pred CceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCcc
Confidence 00 00 0 1112358999999999999999999999 889999987776665444456689999999999999
Q ss_pred CccccccCCCC--CceeeEEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhc--cCCCCCcEEEEeeCCCCeEEEecc
Q 014377 150 RCLVQYDKPYN--PGYQVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKE--ANSKIPTFLYAMPFSSNRIFLEET 225 (426)
Q Consensus 150 s~~r~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~P~~~~~~~v~~~ 225 (426)
|.+++.++... .......++......+ .+. +-..+.......+..... ......++.|++|.. +.+.++..
T Consensus 164 s~v~~~lg~~~~~~~~~~~~gvk~~~~~~---~~~-i~~~~~~~~~~g~~w~~~g~~~~g~~g~G~~~~~~-d~v~vGv~ 238 (429)
T PRK10015 164 SMLGRSLGMVPASDPHHYAVGVKEVIGLT---PEQ-INDRFNITGEEGAAWLFAGSPSDGLMGGGFLYTNK-DSISLGLV 238 (429)
T ss_pred hhhhcccCCCcCCCcCeEEEEEEEEEeCC---HHH-hhHhhcCCCCCCeEEEecCccCCCCCCceEEEEcC-CcEEEEEE
Confidence 99988765422 2233344554333211 110 000000000000000000 000011344555543 44555442
Q ss_pred cCc---CCCCCChHHHHHHHHH--HHhhcCCccccccccceEeecCCCCC--C-CCCCceeEeeccCCCCCC--CCcHHH
Q 014377 226 SLV---ARPGVPMKDIQERMVA--RLKHLGIKVRSIEEDEHCVIPMGGPL--P-VLPQRVVGIGGTAGMVHP--STGYMV 295 (426)
Q Consensus 226 ~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~--~-~~~~~v~liGdAa~~~~P--~~G~G~ 295 (426)
+.. .....+..++.+.+.+ .+... ....+..+...+.+|.++.. + ...++++++||||++++| ++|.|+
T Consensus 239 ~~~~~~~~~~~~~~~~l~~~~~~p~~~~~-~~~~~~~e~~~~~ip~gg~~~~~~~~~~g~llvGDAAg~v~p~~~~g~Gi 317 (429)
T PRK10015 239 CGLGDIAHAQKSVPQMLEDFKQHPAIRPL-ISGGKLLEYSAHMVPEGGLAMVPQLVNDGVMIVGDAAGFCLNLGFTVRGM 317 (429)
T ss_pred EehhhhccCCCCHHHHHHHHhhChHHHHH-hcCCEEEEEeeEEcccCCcccCCccccCCeEEEecccccccccCccccch
Confidence 211 1122345555555532 11111 12234456678888876432 3 357999999999999995 699999
Q ss_pred HHHHHhcHHHHHHHHHhcCCCCC-CchhhhHHHHHHhcC-CHHHHHHHHHHHhHHH-HHhCCChhHHHHHHHHhcCCC
Q 014377 296 ARTLAAAPIVANAIVRSLSSDRS-ISGHKLSAEVWKDLW-PIERRRQREFFCFGMD-ILLKLDLPATRRFFDAFFDLE 370 (426)
Q Consensus 296 ~~a~~~a~~la~~i~~~l~~~~~-~~~~~~y~~~~~~~~-~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~ 370 (426)
+.||.+|..+|+++.++++.++. ...++.|++.|++.+ .++.+..+.+..++.+ .++..-+..+.+.+.++|..+
T Consensus 318 ~~A~~SG~~AAe~i~~a~~~~d~s~~~l~~Y~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (429)
T PRK10015 318 DLAIASAQAAATTVIAAKERADFSASSLAQYKRELEQSCVMRDMQHFRKIPALMENPRLFSQYPRMVADIMNDMFTID 395 (429)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHCHHHHHHHHHhChHhhhcCccHHHHHHHHHHHHHHHhcccC
Confidence 99999999999999999876542 356788999998764 3334444444444322 233334667788888888765
No 18
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=2e-31 Score=258.24 Aligned_cols=307 Identities=17% Similarity=0.213 Sum_probs=187.4
Q ss_pred CCCCCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCC---Ccccch---hHHHhhcCchhhhhhc-cCCeEEE
Q 014377 4 PSKGLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWP---NNYGVW---VDEFEAMDLLDCLDTT-WSGAVVH 76 (426)
Q Consensus 4 ~~~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~---~~~g~~---~~~l~~~~~~~~~~~~-~~~~~~~ 76 (426)
.++..++||+||||||||+++|+.|++.|++|+|+|+++..... +..+.. ...|+.+|+.+.+... .+...+.
T Consensus 13 ~~~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~ 92 (415)
T PRK07364 13 STRSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIR 92 (415)
T ss_pred CCCccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEE
Confidence 34566899999999999999999999999999999998865322 112222 2347788886544322 1211111
Q ss_pred ecCCCc---c-----cc-CCCcc-ccCHHHHHHHHHHHHHh-CCcEEE-EEEEEEEEEeCCeEEEEEcCC---cEEEcCE
Q 014377 77 IDDNTK---K-----DL-DRPYG-RVNRKLLKSKMLQKCIT-NGVKFH-QAKVIKVIHEESKSLLICNDG---VTIQAAV 141 (426)
Q Consensus 77 ~~~~~~---~-----~~-~~~~~-~v~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~~~~~~v~~~~g---~~i~a~~ 141 (426)
+.+... . .. ...++ .+.+..|.+.|.+.+.+ .|++++ +++|++++.+++.+.|++.++ .+++||+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adl 172 (415)
T PRK07364 93 LSDADYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKL 172 (415)
T ss_pred EEeCCCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeE
Confidence 111100 0 01 11122 23445788889888877 589998 999999998888888877642 4699999
Q ss_pred EEECCCCCCccccccCCCCCceeeE-EEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeE
Q 014377 142 VLDATGFSRCLVQYDKPYNPGYQVA-YGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRI 220 (426)
Q Consensus 142 vV~AdG~~s~~r~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~ 220 (426)
||+|||.+|.+|+.++....++... ..+.+.+.. +.......+..|. ..++++++|..++..
T Consensus 173 vIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----------------~~g~~~~~p~~~~~~ 235 (415)
T PRK07364 173 VVAADGARSPIRQAAGIKTKGWKYWQSCVTATVKH-EAPHNDIAYERFW----------------PSGPFAILPLPGNRC 235 (415)
T ss_pred EEEeCCCCchhHHHhCCCceeecCCCEEEEEEEEc-cCCCCCEEEEEec----------------CCCCeEEeECCCCCE
Confidence 9999999999998876654332211 112222221 1111111111110 024577888887764
Q ss_pred EEecccCc----CCCCCChHHHHHHHHHHHhhcCCccccccccceEeecCCCC-CCC-CCCceeEeeccCCCCCCCCcHH
Q 014377 221 FLEETSLV----ARPGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPMGGP-LPV-LPQRVVGIGGTAGMVHPSTGYM 294 (426)
Q Consensus 221 ~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~-~~~~v~liGdAa~~~~P~~G~G 294 (426)
.+.-.... .....+.+++.+.+.+.+......... . .....+|+... .+. ..+|++++|||||.++|++|||
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG 313 (415)
T PRK07364 236 QIVWTAPHAQAKALLALPEAEFLAELQQRYGDQLGKLEL-L-GDRFLFPVQLMQSDRYVQHRLALVGDAAHCCHPVGGQG 313 (415)
T ss_pred EEEEECCHHHHHHHHCCCHHHHHHHHHHHhhhhhcCcee-c-CCCceecchhhhhhhhcCCcEEEEecccccCCCccccc
Confidence 32211100 001234456666666665543222211 1 12233454322 222 4689999999999999999999
Q ss_pred HHHHHHhcHHHHHHHHHhcCCCCCC---chhhhHHHHH
Q 014377 295 VARTLAAAPIVANAIVRSLSSDRSI---SGHKLSAEVW 329 (426)
Q Consensus 295 ~~~a~~~a~~la~~i~~~l~~~~~~---~~~~~y~~~~ 329 (426)
+|+|++||..|+++|.+.++.+... ..++.|++.+
T Consensus 314 ~n~al~DA~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R 351 (415)
T PRK07364 314 LNLGIRDAAALAQVLQTAHQRGEDIGSLAVLKRYERWR 351 (415)
T ss_pred HhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 9999999999999998876433221 4567787654
No 19
>PRK07190 hypothetical protein; Provisional
Probab=100.00 E-value=3.8e-31 Score=258.10 Aligned_cols=301 Identities=13% Similarity=0.151 Sum_probs=194.9
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCC-Ccccchh---HHHhhcCchhhhhh-c--------cCCe
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWP-NNYGVWV---DEFEAMDLLDCLDT-T--------WSGA 73 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~-~~~g~~~---~~l~~~~~~~~~~~-~--------~~~~ 73 (426)
+..+||+||||||+|+++|+.|+++|++|+|||+.+.+... +..+... +.++.+|+.+.+.. . |...
T Consensus 3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g 82 (487)
T PRK07190 3 TQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANG 82 (487)
T ss_pred CccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCC
Confidence 45689999999999999999999999999999998764221 2212222 23666776543321 1 1111
Q ss_pred EE-EecCCCccc---cCC-CccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCC
Q 014377 74 VV-HIDDNTKKD---LDR-PYGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATG 147 (426)
Q Consensus 74 ~~-~~~~~~~~~---~~~-~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG 147 (426)
.. ......... ... .+..+.+..+++.|.+++.+.|++++ +++|++++.+++++.+.+.+|++++|++||+|||
T Consensus 83 ~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG 162 (487)
T PRK07190 83 KFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADG 162 (487)
T ss_pred ceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCC
Confidence 11 100000000 111 12347899999999999998999999 9999999998888888888888999999999999
Q ss_pred CCCccccccCCCCCcee--eEEEEE-EEeecCCCCC-CceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeE--E
Q 014377 148 FSRCLVQYDKPYNPGYQ--VAYGIL-AEVEEHPFDL-DKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRI--F 221 (426)
Q Consensus 148 ~~s~~r~~~~~~~~~~~--~~~g~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~--~ 221 (426)
.+|.+|+.++....+.. ..+.+. +.++. .++. ..... +... .+.+..+|..++.. .
T Consensus 163 ~~S~vR~~lgi~f~g~~~~~~~~~~d~~~~~-~~~~~~~~~~--~~~~---------------~g~~~~~p~~~~~~r~~ 224 (487)
T PRK07190 163 SRSFVRNHFNVPFEIIRPQIIWAVIDGVIDT-DFPKVPEIIV--FQAE---------------TSDVAWIPREGEIDRFY 224 (487)
T ss_pred CCHHHHHHcCCCccccccceeEEEEEEEEcc-CCCCCcceEE--EEcC---------------CCCEEEEECCCCEEEEE
Confidence 99999998876554322 222221 22221 1111 11111 1010 24455678876543 2
Q ss_pred EecccCcCCCCCChHHHHHHHHHHHhhcCCccccccccceEeecCCCCCC-CC--CCceeEeeccCCCCCCCCcHHHHHH
Q 014377 222 LEETSLVARPGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPMGGPLP-VL--PQRVVGIGGTAGMVHPSTGYMVART 298 (426)
Q Consensus 222 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~--~~~v~liGdAa~~~~P~~G~G~~~a 298 (426)
+.. .....+.+++.+.+.+.+......+.++. ....+++..... .+ .+||+|+|||||.++|++|||+|.+
T Consensus 225 ~~~----~~~~~t~~~~~~~l~~~~~~~~~~~~~~~--w~s~~~~~~r~a~~~r~~gRV~LaGDAAH~h~P~gGQGmN~g 298 (487)
T PRK07190 225 VRM----DTKDFTLEQAIAKINHAMQPHRLGFKEIV--WFSQFSVKESVAEHFFIQDRIFLAGDACHIHSVNGGQGLNTG 298 (487)
T ss_pred EEc----CCCCCCHHHHHHHHHHhcCCCCCceEEEE--EEEEeeeCcEehhhcCcCCcEEEEecccccCCCccccchhhh
Confidence 221 22345677777777665543333333221 133445543332 23 5999999999999999999999999
Q ss_pred HHhcHHHHHHHHHhcCCCCCCchhhhHHHHHHh
Q 014377 299 LAAAPIVANAIVRSLSSDRSISGHKLSAEVWKD 331 (426)
Q Consensus 299 ~~~a~~la~~i~~~l~~~~~~~~~~~y~~~~~~ 331 (426)
++||.+|++.|+..+++....+.++.|+..++.
T Consensus 299 iqDA~nL~wkLa~v~~g~a~~~lLdtY~~eR~p 331 (487)
T PRK07190 299 LADAFNLIWKLNMVIHHGASPELLQSYEAERKP 331 (487)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 999999999999888765555678889877553
No 20
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=100.00 E-value=3.8e-31 Score=244.67 Aligned_cols=283 Identities=20% Similarity=0.234 Sum_probs=181.7
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccc--hhHHHhhcCchhh-hhhccCCeEEEecCCCccc--
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGV--WVDEFEAMDLLDC-LDTTWSGAVVHIDDNTKKD-- 84 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~--~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~-- 84 (426)
|||+||||||+|+++|+.|++.|++|+|+|+++.+.. ..++. ....++.++.... ....+....+.........
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY-KPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIP 79 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc-ccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEec
Confidence 6999999999999999999999999999999976543 22322 2222333332211 1111222222222211111
Q ss_pred c-CCCccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcC-CcEEEcCEEEECCCCCCccccccCCCCC
Q 014377 85 L-DRPYGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICND-GVTIQAAVVLDATGFSRCLVQYDKPYNP 161 (426)
Q Consensus 85 ~-~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~-g~~i~a~~vV~AdG~~s~~r~~~~~~~~ 161 (426)
. ...+..++|..|.+.|.+.+.+.|++++ +++|++++.+++++.+.+.+ +.+++||+||+|||.+|.+++.++....
T Consensus 80 ~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s~~~~~~~~~~~ 159 (295)
T TIGR02032 80 IETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRSIVAKKLGLRKE 159 (295)
T ss_pred cCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcchHHHHhcCCCCC
Confidence 1 1223358999999999999999999998 99999998888877776554 4689999999999999999886654433
Q ss_pred ceeeEEEEEEEeecC--CCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeEEEecccCcCCCCCChHHHH
Q 014377 162 GYQVAYGILAEVEEH--PFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETSLVARPGVPMKDIQ 239 (426)
Q Consensus 162 ~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~~~~~~~~~~~ 239 (426)
..+...++...+..+ ....+...++. .... ..++|+|++|.+++++.++.+...... .....
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----------~~~~~~~~~P~~~~~~~v~~~~~~~~~---~~~~~ 223 (295)
T TIGR02032 160 PRELGVAARAEVEMPDEEVDEDFVEVYI--DRGI-----------SPGGYGWVFPKGDGTANVGVGSRSAEE---GEDLK 223 (295)
T ss_pred CcceeeEEEEEEecCCcccCcceEEEEc--CCCc-----------CCCceEEEEeCCCCeEEEeeeeccCCC---CCCHH
Confidence 334444443333322 22222221111 1100 014889999999998766654332222 23344
Q ss_pred HHHHHHHhhcC-CccccccccceEeecCCCCCCC-CCCceeEeeccCCCCCCCCcHHHHHHHHhcHHHHHHH
Q 014377 240 ERMVARLKHLG-IKVRSIEEDEHCVIPMGGPLPV-LPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAI 309 (426)
Q Consensus 240 ~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~-~~~~v~liGdAa~~~~P~~G~G~~~a~~~a~~la~~i 309 (426)
+.+.++++... +...++.+...+.+|....... +.+|++++|||||+++|++|||+++|++||..+|++|
T Consensus 224 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 224 KYLKDFLARRPELKDAETVEVIGAPIPIGRPDDKTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred HHHHHHHHhCcccccCcEEeeeceeeccCCCCCccccCCEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence 44555554332 2223344445566676544333 5799999999999999999999999999999998864
No 21
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=100.00 E-value=5.3e-31 Score=255.72 Aligned_cols=305 Identities=17% Similarity=0.240 Sum_probs=190.2
Q ss_pred CcEEEECchHHHHHHHHHHHH----CCCcEEEEcCCCCCCCC-------------Ccccchh---HHHhhcCchhhhhh-
Q 014377 10 VDLAVVGGGPAGLAVAQQVSE----AGLSVCSIDPSPKLIWP-------------NNYGVWV---DEFEAMDLLDCLDT- 68 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~----~G~~V~liE~~~~~~~~-------------~~~g~~~---~~l~~~~~~~~~~~- 68 (426)
|||+||||||+|+++|+.|++ .|++|+|||+++.+... +..+... ..|+.+|+.+.+..
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 699999999999999999999 89999999995433211 1222222 34778888765542
Q ss_pred cc-CCeEEEecCCCc---ccc-----CCCcc-ccCHHHHHHHHHHHHHhC---CcEEE-EEEEEEEEEe-------CCeE
Q 014377 69 TW-SGAVVHIDDNTK---KDL-----DRPYG-RVNRKLLKSKMLQKCITN---GVKFH-QAKVIKVIHE-------ESKS 127 (426)
Q Consensus 69 ~~-~~~~~~~~~~~~---~~~-----~~~~~-~v~r~~l~~~L~~~~~~~---gv~~~-~~~v~~i~~~-------~~~~ 127 (426)
.+ +...+.+.+... ..+ ..+++ .+++..|.+.|.+.+.+. +++++ +++|++++.+ ++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v 160 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWV 160 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCce
Confidence 12 211222211111 001 12223 479999999999998875 48988 9999999752 4568
Q ss_pred EEEEcCCcEEEcCEEEECCCCCCccccccCCCCCceee-EEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCC
Q 014377 128 LLICNDGVTIQAAVVLDATGFSRCLVQYDKPYNPGYQV-AYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKI 206 (426)
Q Consensus 128 ~v~~~~g~~i~a~~vV~AdG~~s~~r~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (426)
+|++.+|++++||+||+|||.+|.+|+.++....++.+ ..+++..+...........+..|..
T Consensus 161 ~v~~~~g~~i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~~v~~~~~~~~~~~~~~f~~---------------- 224 (437)
T TIGR01989 161 HITLSDGQVLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVATLKLEEATENDVAWQRFLP---------------- 224 (437)
T ss_pred EEEEcCCCEEEeeEEEEecCCCChhHHHcCCCccceeeccEEEEEEEEcccCCCCCeEEEEECC----------------
Confidence 88999999999999999999999999988776655432 2233333332111111222222211
Q ss_pred CcEEEEeeCCCCeEEEecccCcC----CCCCChHHHHHHHHHHHh-------h--------------cCCc---------
Q 014377 207 PTFLYAMPFSSNRIFLEETSLVA----RPGVPMKDIQERMVARLK-------H--------------LGIK--------- 252 (426)
Q Consensus 207 ~~~~~~~P~~~~~~~v~~~~~~~----~~~~~~~~~~~~~~~~~~-------~--------------~~~~--------- 252 (426)
.+.+..+|.+++...+.-+.... ....+.+++.+.+.+.+. . .+..
T Consensus 225 ~g~~~~lPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 304 (437)
T TIGR01989 225 TGPIALLPLPDNNSTLVWSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYLLDYAMEKLNEDIGFRTEGSKSCFQ 304 (437)
T ss_pred CCCEEEeECCCCCEEEEEeCCHHHHHHHHcCCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccc
Confidence 25577788887754322111100 013455566665544440 0 0000
Q ss_pred ----cccccccceEeecCCCCCC-C-CCCceeEeeccCCCCCCCCcHHHHHHHHhcHHHHHHHHHhcCCCCCC---chhh
Q 014377 253 ----VRSIEEDEHCVIPMGGPLP-V-LPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVRSLSSDRSI---SGHK 323 (426)
Q Consensus 253 ----~~~~~~~~~~~~p~~~~~~-~-~~~~v~liGdAa~~~~P~~G~G~~~a~~~a~~la~~i~~~l~~~~~~---~~~~ 323 (426)
...+.......+|+..... . ..+|++++|||||.++|.+|||+|.|++||..|++.|.+.++.+.+. ..++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~~~~L~ 384 (437)
T TIGR01989 305 VPPRVIGVVDKSRAAFPLGLGHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVGADIGSISSLK 384 (437)
T ss_pred cCchhheeecccceeEEecccchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHH
Confidence 0111111234556543322 2 46899999999999999999999999999999999999887554321 3466
Q ss_pred hHHHHHH
Q 014377 324 LSAEVWK 330 (426)
Q Consensus 324 ~y~~~~~ 330 (426)
.|++.++
T Consensus 385 ~Y~~~R~ 391 (437)
T TIGR01989 385 PYERERY 391 (437)
T ss_pred HHHHHHH
Confidence 7775543
No 22
>PRK08244 hypothetical protein; Provisional
Probab=100.00 E-value=7.4e-31 Score=258.96 Aligned_cols=302 Identities=14% Similarity=0.132 Sum_probs=192.1
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCC-CCCcccch---hHHHhhcCchhhhhh-c--cCCeEEEecCCC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLI-WPNNYGVW---VDEFEAMDLLDCLDT-T--WSGAVVHIDDNT 81 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~-~~~~~g~~---~~~l~~~~~~~~~~~-~--~~~~~~~~~~~~ 81 (426)
++||+||||||+|+++|+.|++.|++|+|||+.+.+. ..+..+.+ .+.|+.+|+.+.+.. . ++...+......
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 81 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTR 81 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEeccccc
Confidence 4899999999999999999999999999999987642 12223333 234778888654432 1 222222111100
Q ss_pred c--c--ccCCCcc-ccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEc--CC-cEEEcCEEEECCCCCCcc
Q 014377 82 K--K--DLDRPYG-RVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICN--DG-VTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 82 ~--~--~~~~~~~-~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~--~g-~~i~a~~vV~AdG~~s~~ 152 (426)
. . ....++. .+++..+++.|.+.+.+.|++++ ++++++++.+++++++++. +| ++++||+||+|||.+|.+
T Consensus 82 ~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~v 161 (493)
T PRK08244 82 LDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSIV 161 (493)
T ss_pred CCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChHH
Confidence 0 0 1112332 37899999999999988899998 9999999988888777654 45 479999999999999999
Q ss_pred ccccCCCCCceee-EEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeEEEecccC----
Q 014377 153 VQYDKPYNPGYQV-AYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETSL---- 227 (426)
Q Consensus 153 r~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~---- 227 (426)
|+.++....+... ..++...+......... .+..+ . ..++++++|..++...+.....
T Consensus 162 R~~lgi~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~------------~----~~g~~~~~P~~~~~~~~~~~~~~~~~ 224 (493)
T PRK08244 162 RKQAGIAFPGTDATFTAMLGDVVLKDPPPSS-VLSLC------------T----REGGVMIVPLSGGIYRVLIIDPERPQ 224 (493)
T ss_pred HHhcCCCccCCCcceEEEEEEEEecCCCCcc-eeEEE------------e----CCceEEEEECCCCeEEEEEEcCCccc
Confidence 9987654433221 22232222211111111 11110 0 1267889999887654322110
Q ss_pred -cCCCCCChHHHHHHHHHHHhhcCCccccccccceEeecCCCCC-CC-CCCceeEeeccCCCCCCCCcHHHHHHHHhcHH
Q 014377 228 -VARPGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPMGGPL-PV-LPQRVVGIGGTAGMVHPSTGYMVARTLAAAPI 304 (426)
Q Consensus 228 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~-~~~~v~liGdAa~~~~P~~G~G~~~a~~~a~~ 304 (426)
......+.+++.+.+.+.+... ....... ....++..... +. ..+||+|+|||||.++|++|||+|++|+||.+
T Consensus 225 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~--~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~ 301 (493)
T PRK08244 225 VPKDEPVTLEELKTSLIRICGTD-FGLNDPV--WMSRFGNATRQAERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQDAMN 301 (493)
T ss_pred ccCCCCCCHHHHHHHHHHhhCCC-CCcCCee--EEEecccceeeHhhhccCcEEEeecceeccCCccccccccchhhHHH
Confidence 0112235666766666554321 1111111 11222322221 22 35899999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCchhhhHHHHHH
Q 014377 305 VANAIVRSLSSDRSISGHKLSAEVWK 330 (426)
Q Consensus 305 la~~i~~~l~~~~~~~~~~~y~~~~~ 330 (426)
|++.|+..+++......++.|++.++
T Consensus 302 La~~La~~l~g~~~~~lL~~Ye~eR~ 327 (493)
T PRK08244 302 LGWKLAAAIKGWAPDWLLDSYHAERH 327 (493)
T ss_pred HHHHHHHHHcCCCCchhhhhhHHHHH
Confidence 99999998865444466888987654
No 23
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=100.00 E-value=3.6e-31 Score=254.35 Aligned_cols=301 Identities=18% Similarity=0.233 Sum_probs=186.5
Q ss_pred CCCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCC-------Ccccc---hhHHHhhcCchhhhhh-------
Q 014377 6 KGLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWP-------NNYGV---WVDEFEAMDLLDCLDT------- 68 (426)
Q Consensus 6 ~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~-------~~~g~---~~~~l~~~~~~~~~~~------- 68 (426)
....+||+||||||+|+++|+.|++.|++|+|||+.+..... +..+. ....++.+|+.+.+..
T Consensus 2 ~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~ 81 (391)
T PRK08020 2 TNQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYR 81 (391)
T ss_pred CcccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccc
Confidence 345699999999999999999999999999999998643221 11111 1234677777654332
Q ss_pred -----ccCCeEEEecCCCccccC-CCcc-ccCHHHHHHHHHHHHHhC-CcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEc
Q 014377 69 -----TWSGAVVHIDDNTKKDLD-RPYG-RVNRKLLKSKMLQKCITN-GVKFH-QAKVIKVIHEESKSLLICNDGVTIQA 139 (426)
Q Consensus 69 -----~~~~~~~~~~~~~~~~~~-~~~~-~v~r~~l~~~L~~~~~~~-gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a 139 (426)
.|....+.+... ... ..++ .++|..|.+.|.+.+.+. |++++ +++|++++.+++++.|.+.+|++++|
T Consensus 82 ~~~~~~~~~~~~~~~~~---~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a 158 (391)
T PRK08020 82 RLETWEWETAHVVFDAA---ELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQA 158 (391)
T ss_pred eEEEEeCCCCeEEeccc---ccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEe
Confidence 122222222111 111 1222 489999999999998874 99998 99999999888888888888989999
Q ss_pred CEEEECCCCCCccccccCCCCCcee-eEEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCC
Q 014377 140 AVVLDATGFSRCLVQYDKPYNPGYQ-VAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSN 218 (426)
Q Consensus 140 ~~vV~AdG~~s~~r~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~ 218 (426)
|+||+|||.+|.+|+..+....... ...++.+.+.... ......+..+.. .+-...+|..++
T Consensus 159 ~~vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~~-~~~~~~~~~~~~----------------~g~~~~~p~~~~ 221 (391)
T PRK08020 159 KLVIGADGANSQVRQMAGIGVHGWQYRQSCMLISVKCEN-PPGDSTWQQFTP----------------SGPRAFLPLFDN 221 (391)
T ss_pred CEEEEeCCCCchhHHHcCCCccccCCCceEEEEEEEecC-CCCCEEEEEEcC----------------CCCEEEeECCCC
Confidence 9999999999999998764332211 1233333333211 111111211111 122345677665
Q ss_pred eEEE---ecccCcC-CCCCChHHHHHHHHHHHhhcCCccccccccceEeecCCCCC-CC-CCCceeEeeccCCCCCCCCc
Q 014377 219 RIFL---EETSLVA-RPGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPMGGPL-PV-LPQRVVGIGGTAGMVHPSTG 292 (426)
Q Consensus 219 ~~~v---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~-~~~~v~liGdAa~~~~P~~G 292 (426)
+..+ ....... ....+.+++.+.+.+.++.. ..++.......+|+.... +. ..+|++++|||||.++|+.|
T Consensus 222 ~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~pl~~~~~~~~~~~rv~LvGDAAH~~~P~~G 298 (391)
T PRK08020 222 WASLVWYDSPARIRQLQAMSMAQLQQEIAAHFPAR---LGAVTPVAAGAFPLTRRHALQYVQPGLALVGDAAHTINPLAG 298 (391)
T ss_pred cEEEEEECCHHHHHHHHCCCHHHHHHHHHHHhhhh---ccceEeccccEeecceeehhhhccCcEEEEechhhccCCccc
Confidence 4322 1110000 01223445555554444322 122222234556654322 22 46899999999999999999
Q ss_pred HHHHHHHHhcHHHHHHHHHhcCCCCC---CchhhhHHHHH
Q 014377 293 YMVARTLAAAPIVANAIVRSLSSDRS---ISGHKLSAEVW 329 (426)
Q Consensus 293 ~G~~~a~~~a~~la~~i~~~l~~~~~---~~~~~~y~~~~ 329 (426)
||+|+|++||..|++.|.+..+.+.. ...++.|++.+
T Consensus 299 qG~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R 338 (391)
T PRK08020 299 QGVNLGYRDVDALLDVLVNARSYGEAWASEAVLKRYQRRR 338 (391)
T ss_pred chhHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 99999999999999999987543322 14566677553
No 24
>PRK11445 putative oxidoreductase; Provisional
Probab=100.00 E-value=5.6e-31 Score=248.33 Aligned_cols=294 Identities=17% Similarity=0.188 Sum_probs=181.5
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCC---CCCcccchh-----HHHhhcCchh---hhhhc--cCCeEE
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLI---WPNNYGVWV-----DEFEAMDLLD---CLDTT--WSGAVV 75 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~---~~~~~g~~~-----~~l~~~~~~~---~~~~~--~~~~~~ 75 (426)
.+||+||||||||+++|+.|++. ++|+|+|+++... ....||... ..|+++|+.. .+... .....+
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 79 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTI 79 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEe
Confidence 37999999999999999999999 9999999987532 334466532 2366666642 11100 011111
Q ss_pred EecCCCccccCCCccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEE-cCCc--EEEcCEEEECCCCCCc
Q 014377 76 HIDDNTKKDLDRPYGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLIC-NDGV--TIQAAVVLDATGFSRC 151 (426)
Q Consensus 76 ~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~-~~g~--~i~a~~vV~AdG~~s~ 151 (426)
............+|..++|..|++.|.+. .+.|++++ ++++++++.+++++.|.+ .+|+ +++||+||+|||.+|.
T Consensus 80 ~~~~~~~~~~~~~~~~i~R~~~~~~L~~~-~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~ 158 (351)
T PRK11445 80 DLANSLTRNYQRSYINIDRHKFDLWLKSL-IPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANSM 158 (351)
T ss_pred cccccchhhcCCCcccccHHHHHHHHHHH-HhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence 11111111123355569999999999985 45789998 999999998888888775 4564 6899999999999999
Q ss_pred cccccCCCCCceeeEEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeEEEecccCcCCC
Q 014377 152 LVQYDKPYNPGYQVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETSLVARP 231 (426)
Q Consensus 152 ~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~~~ 231 (426)
+|+.+...... ....++..........+-...+.+. ....+|.|.+|.++... ++.. . +
T Consensus 159 vr~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~f~~---------------~~~~~~~W~~p~~~~~~-~g~~-~---~ 217 (351)
T PRK11445 159 VRRHLYPDHQI-RKYVAIQQWFAEKHPVPFYSCIFDN---------------EITDCYSWSISKDGYFI-FGGA-Y---P 217 (351)
T ss_pred HhHHhcCCCch-hhEEEEEEEecCCCCCCCcceEEec---------------cCCCceEEEeCCCCcEE-eccc-c---c
Confidence 99876543211 1122322222211100000001110 11148999999976543 3222 1 1
Q ss_pred CCChHHHHHHHHHHHhhcCCccccccccceEeecCCCCCCC---CCCceeEeeccCCCCCCCCcHHHHHHHHhcHHHHHH
Q 014377 232 GVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPMGGPLPV---LPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANA 308 (426)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~v~liGdAa~~~~P~~G~G~~~a~~~a~~la~~ 308 (426)
..+..+..+.+.+++...+....++.+.+.+.++....... ..+|++++|||||+++|++|+|++.|++++..+|+.
T Consensus 218 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~~ 297 (351)
T PRK11445 218 MKDGRERFETLKEKLSAFGFQFGKPVKTEACTVLRPSRWQDFVCGKDNAFLIGEAAGFISPSSLEGISYALDSARILSEV 297 (351)
T ss_pred ccchHHHHHHHHHHHHhcccccccccccccccccCcccccccccCCCCEEEEEcccCccCCccCccHHHHHHhHHHHHHH
Confidence 11222233344455554444433433333333332221121 248899999999999999999999999999999999
Q ss_pred HHHhcCCCCCCchhhhHHHHHH
Q 014377 309 IVRSLSSDRSISGHKLSAEVWK 330 (426)
Q Consensus 309 i~~~l~~~~~~~~~~~y~~~~~ 330 (426)
|.+..+ ..++.|++.|+
T Consensus 298 l~~~~~-----~~~~~y~~~~~ 314 (351)
T PRK11445 298 LNKQPE-----KLNTAYWRKTR 314 (351)
T ss_pred HHhccc-----chHHHHHHHHH
Confidence 986552 45778887765
No 25
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=100.00 E-value=1e-30 Score=250.78 Aligned_cols=302 Identities=15% Similarity=0.199 Sum_probs=181.2
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCC---CCcccch---hHHHhhcCchhhhhh---ccCCeEEEecC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIW---PNNYGVW---VDEFEAMDLLDCLDT---TWSGAVVHIDD 79 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~---~~~~g~~---~~~l~~~~~~~~~~~---~~~~~~~~~~~ 79 (426)
++||+||||||+|+++|+.|++.|++|+|+|+++.... .+..... ...|+++|+.+.+.. ......+....
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g 81 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDG 81 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECC
Confidence 58999999999999999999999999999999875311 1111111 235788888665532 12222332221
Q ss_pred CCccccC-------CCccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEE-eCCeEEEEE-cCCc--EEEcCEEEECCC
Q 014377 80 NTKKDLD-------RPYGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIH-EESKSLLIC-NDGV--TIQAAVVLDATG 147 (426)
Q Consensus 80 ~~~~~~~-------~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~-~~~~~~v~~-~~g~--~i~a~~vV~AdG 147 (426)
.....+ .....+++..+.+.|.+.+.+.|++++ ++++++++. +++.+.|++ .+|+ +++||+||+|||
T Consensus 82 -~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG 160 (392)
T PRK08243 82 -RRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDG 160 (392)
T ss_pred -EEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCC
Confidence 111111 111235688888999998888899998 999999987 556666766 4663 689999999999
Q ss_pred CCCccccccCCCCC-ceeeE--EEEEEEe-ecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCe--EE
Q 014377 148 FSRCLVQYDKPYNP-GYQVA--YGILAEV-EEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNR--IF 221 (426)
Q Consensus 148 ~~s~~r~~~~~~~~-~~~~~--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~--~~ 221 (426)
.+|.+|+.++.... .+... +++.... +.++. .+...+.. ...+|.++.|.+.+. ++
T Consensus 161 ~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~ 222 (392)
T PRK08243 161 FHGVSRASIPAGALRTFERVYPFGWLGILAEAPPV-SDELIYAN-----------------HERGFALCSMRSPTRSRYY 222 (392)
T ss_pred CCCchhhhcCcchhhceecccCceEEEEeCCCCCC-CCceEEee-----------------CCCceEEEecCCCCcEEEE
Confidence 99999998754321 11111 1221111 11111 11111100 012555655555442 22
Q ss_pred EecccCcCCCCCChHHHHHHHHHHHhhc-CCccccccccceEeecCCCC-C-CCCCCceeEeeccCCCCCCCCcHHHHHH
Q 014377 222 LEETSLVARPGVPMKDIQERMVARLKHL-GIKVRSIEEDEHCVIPMGGP-L-PVLPQRVVGIGGTAGMVHPSTGYMVART 298 (426)
Q Consensus 222 v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~-~-~~~~~~v~liGdAa~~~~P~~G~G~~~a 298 (426)
+...........+.+..++.+.+.+... ..............+|+... . +...+|++|+|||||.++|++|||+|+|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~a 302 (392)
T PRK08243 223 LQCPLDDKVEDWSDERFWDELRRRLPPEDAERLVTGPSIEKSIAPLRSFVAEPMQYGRLFLAGDAAHIVPPTGAKGLNLA 302 (392)
T ss_pred EEecCCCCcccCChhHHHHHHHHhcCcccccccccCccccccceeeeeceeccceeCCEEEEecccccCCCCcCcchhHH
Confidence 2111111122234555666666555432 11111000011222333211 1 2235899999999999999999999999
Q ss_pred HHhcHHHHHHHHHhcCCCCCCchhhhHHHHHH
Q 014377 299 LAAAPIVANAIVRSLSSDRSISGHKLSAEVWK 330 (426)
Q Consensus 299 ~~~a~~la~~i~~~l~~~~~~~~~~~y~~~~~ 330 (426)
|+||..||+.|.+.++++ ..+.+..|++.++
T Consensus 303 i~Da~~La~~L~~~~~~~-~~~~L~~Ye~~r~ 333 (392)
T PRK08243 303 ASDVRYLARALVEFYREG-DTALLDAYSATAL 333 (392)
T ss_pred HHHHHHHHHHHHHHhccC-CHHHHHHHHHHHH
Confidence 999999999999877543 2367888987765
No 26
>PRK06834 hypothetical protein; Provisional
Probab=100.00 E-value=1.5e-30 Score=254.28 Aligned_cols=300 Identities=16% Similarity=0.147 Sum_probs=193.4
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCC--CCCcccchh---HHHhhcCchhhhhhc---cCCeE---EE
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLI--WPNNYGVWV---DEFEAMDLLDCLDTT---WSGAV---VH 76 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~--~~~~~g~~~---~~l~~~~~~~~~~~~---~~~~~---~~ 76 (426)
..+||+||||||+|+++|+.|+++|++|+|||+.+.+. .++..+.+. +.++.+|+.+.+... +.... ..
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 81 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATR 81 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEe
Confidence 46899999999999999999999999999999987543 223333333 346777876544321 11111 11
Q ss_pred ecCCCccccCCCcc-ccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCcccc
Q 014377 77 IDDNTKKDLDRPYG-RVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRCLVQ 154 (426)
Q Consensus 77 ~~~~~~~~~~~~~~-~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~~r~ 154 (426)
+.. .......++. .+.+..+++.|.+.+.+.|++++ +++|++++.+++++.+++.+|++++||+||+|||.+|.+|+
T Consensus 82 ~~~-~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~vR~ 160 (488)
T PRK06834 82 LDI-SDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLVRK 160 (488)
T ss_pred ccc-ccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCcHh
Confidence 110 0011112343 36889999999999988899999 99999999988889888888889999999999999999999
Q ss_pred ccCCCCCceee-EEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCC-CCeEEEe--cccCcCC
Q 014377 155 YDKPYNPGYQV-AYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFS-SNRIFLE--ETSLVAR 230 (426)
Q Consensus 155 ~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~-~~~~~v~--~~~~~~~ 230 (426)
.++....++.. ...+...+.... .+... .. .. ..+++...|.. +++..+. .......
T Consensus 161 ~lgi~~~g~~~~~~~~~~dv~~~~-~~~~~--~~-~~---------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (488)
T PRK06834 161 AAGIDFPGWDPTTSYLIAEVEMTE-EPEWG--VH-RD---------------ALGIHAFGRLEDEGPVRVMVTEKQVGAT 221 (488)
T ss_pred hcCCCCCCCCcceEEEEEEEEecC-CCCcc--ee-eC---------------CCceEEEeccCCCCeEEEEEecCCCCCC
Confidence 88765554432 223333332111 00000 00 00 02445555554 4432211 1111111
Q ss_pred CCCChHHHHHHHHHHHhh-cCCccccccccceEeecCCCCC-CC-CCCceeEeeccCCCCCCCCcHHHHHHHHhcHHHHH
Q 014377 231 PGVPMKDIQERMVARLKH-LGIKVRSIEEDEHCVIPMGGPL-PV-LPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVAN 307 (426)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~-~~-~~~~v~liGdAa~~~~P~~G~G~~~a~~~a~~la~ 307 (426)
...+.+++.+.+.+.+.. ++. .... ....++..... +. ..+||+|+|||||.++|+.|||+|.+++||.+|++
T Consensus 222 ~~~~~~~~~~~l~~~~g~~~~~--~~~~--~~~~~~~~~r~a~~~~~gRV~LaGDAAH~~~P~gGQG~N~gi~DA~nLaw 297 (488)
T PRK06834 222 GEPTLDDLREALIAVYGTDYGI--HSPT--WISRFTDMARQAASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLGW 297 (488)
T ss_pred CCCCHHHHHHHHHHhhCCCCcc--ccce--eEEeccccceecccccCCcEEEEeeccccCCccccccccccHHHHHHHHH
Confidence 234566777777665542 221 1111 12233332222 22 45899999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCchhhhHHHHHHh
Q 014377 308 AIVRSLSSDRSISGHKLSAEVWKD 331 (426)
Q Consensus 308 ~i~~~l~~~~~~~~~~~y~~~~~~ 331 (426)
+|+..+++......++.|++.++.
T Consensus 298 kLa~vl~g~~~~~lLd~Ye~eRrp 321 (488)
T PRK06834 298 KLAQVVKGTSPESLLDTYHAERHP 321 (488)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHH
Confidence 999988765554678889877653
No 27
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=100.00 E-value=9.9e-31 Score=262.29 Aligned_cols=308 Identities=14% Similarity=0.134 Sum_probs=192.7
Q ss_pred CCCcCcEEEECchHHHHHHHHHHHH-CCCcEEEEcCCCCCCC-CCcccchh---HHHhhcCchhhhhh-ccC--CeEEEe
Q 014377 6 KGLVVDLAVVGGGPAGLAVAQQVSE-AGLSVCSIDPSPKLIW-PNNYGVWV---DEFEAMDLLDCLDT-TWS--GAVVHI 77 (426)
Q Consensus 6 ~~~~~dViIvGgG~aGl~~A~~La~-~G~~V~liE~~~~~~~-~~~~g~~~---~~l~~~~~~~~~~~-~~~--~~~~~~ 77 (426)
|+.++||+||||||+||++|+.|++ .|++|+|||+.+.+.. .+..|... +.|+.+|+.+.+.. ..+ ...++.
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~ 108 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWK 108 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEc
Confidence 4568999999999999999999999 4999999999875422 22233333 45788888665432 111 111111
Q ss_pred cCCC---------------ccccCCCccccCHHHHHHHHHHHHHhCC--cEEE-EEEEEEEEEeC---CeEEEEEc----
Q 014377 78 DDNT---------------KKDLDRPYGRVNRKLLKSKMLQKCITNG--VKFH-QAKVIKVIHEE---SKSLLICN---- 132 (426)
Q Consensus 78 ~~~~---------------~~~~~~~~~~v~r~~l~~~L~~~~~~~g--v~~~-~~~v~~i~~~~---~~~~v~~~---- 132 (426)
.... ......++..+++..+++.|.+.+.+.| +++. ++++++++.++ ..++|++.
T Consensus 109 ~~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~ 188 (634)
T PRK08294 109 PDPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDG 188 (634)
T ss_pred CCCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCC
Confidence 1100 0001123335799999999999998765 4666 89999998764 24777664
Q ss_pred --CC--cEEEcCEEEECCCCCCccccccCCCCCcee--eEEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCC
Q 014377 133 --DG--VTIQAAVVLDATGFSRCLVQYDKPYNPGYQ--VAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKI 206 (426)
Q Consensus 133 --~g--~~i~a~~vV~AdG~~s~~r~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (426)
+| ++++||+||+|||++|.+|++++....+.. ..+++.-......++........... .
T Consensus 189 ~~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~~v~dv~~~~~~p~~~~~~~~~~~---------------~ 253 (634)
T PRK08294 189 EHEGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAWGVMDVLAVTDFPDIRLKCAIQSA---------------S 253 (634)
T ss_pred CCCCceEEEEeCEEEECCCCchHHHHhcCCCccCCcccceEEEEEEEEccCCCCcceEEEEecC---------------C
Confidence 34 589999999999999999999876554432 23333211111112111111000000 1
Q ss_pred CcEEEEeeCCCCe-EE--EecccC--c---CCCCCChHHHHHHHHHHHhhcCCccccccccceEeecCCCCCC-------
Q 014377 207 PTFLYAMPFSSNR-IF--LEETSL--V---ARPGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPMGGPLP------- 271 (426)
Q Consensus 207 ~~~~~~~P~~~~~-~~--v~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~------- 271 (426)
.+.+.++|..++. +. +..... . .....+.+++.+.+.+.+.........+.. ...+++.....
T Consensus 254 ~g~~~~~P~~~g~~~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~p~~~~~~~v~w--~s~y~i~~r~a~~f~~~~ 331 (634)
T PRK08294 254 EGSILLIPREGGYLVRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILHPYTLDVKEVAW--WSVYEVGQRLTDRFDDVP 331 (634)
T ss_pred CceEEEEECCCCeEEEEEEecCcCCCccccccccCCHHHHHHHHHHhcCCCCCceeEEeE--Eecccccceehhhccccc
Confidence 2556778887774 22 221110 0 113456777777777665543333333222 22223221111
Q ss_pred -----CCCCceeEeeccCCCCCCCCcHHHHHHHHhcHHHHHHHHHhcCCCCCCchhhhHHHHHH
Q 014377 272 -----VLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVRSLSSDRSISGHKLSAEVWK 330 (426)
Q Consensus 272 -----~~~~~v~liGdAa~~~~P~~G~G~~~a~~~a~~la~~i~~~l~~~~~~~~~~~y~~~~~ 330 (426)
...+||+|+|||||.++|.+|||+|.+|+||.+|++.|+..+++....+.++.|+..++
T Consensus 332 ~~~~~~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~g~a~~~lL~tYe~ERr 395 (634)
T PRK08294 332 AEEAGTRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSGRSPPELLHTYSAERQ 395 (634)
T ss_pred ccccccccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 02489999999999999999999999999999999999998876555567888987755
No 28
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=6e-31 Score=250.62 Aligned_cols=293 Identities=14% Similarity=0.168 Sum_probs=181.8
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCC---C--CCcccchh---HHHhhcCchhhhhh-ccC--CeEEEec
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLI---W--PNNYGVWV---DEFEAMDLLDCLDT-TWS--GAVVHID 78 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~---~--~~~~g~~~---~~l~~~~~~~~~~~-~~~--~~~~~~~ 78 (426)
+||+||||||+|+++|+.|++.|++|+|+|+.+... . .+..+.+. ..|+.+|+.+.+.. ..+ ...+...
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 81 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDN 81 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEEC
Confidence 799999999999999999999999999999874321 0 12222332 24778887654332 112 1122111
Q ss_pred CCCc-ccc----CCCcc-ccCHHHHHHHHHHHHHhC-CcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCC
Q 014377 79 DNTK-KDL----DRPYG-RVNRKLLKSKMLQKCITN-GVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSR 150 (426)
Q Consensus 79 ~~~~-~~~----~~~~~-~v~r~~l~~~L~~~~~~~-gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s 150 (426)
.... ..+ ..+++ .++|..|++.|.+++.+. +++++ ++++++++.+++++.|.+.++ +++||+||+|||.+|
T Consensus 82 ~g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S 160 (374)
T PRK06617 82 KASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANS 160 (374)
T ss_pred CCceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCc
Confidence 1110 001 11233 479999999999999885 58888 999999998888888988776 899999999999999
Q ss_pred ccccccCCCCCceeeEEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCe--EEEecccCc
Q 014377 151 CLVQYDKPYNPGYQVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNR--IFLEETSLV 228 (426)
Q Consensus 151 ~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~--~~v~~~~~~ 228 (426)
.+|+.+...........++.+.++... +.....+..+.. .+.++.+|..++. .++-.....
T Consensus 161 ~vR~~l~~~~~~~~y~~~~~~~v~~~~-~~~~~~~~~~~~----------------~g~~~~lPl~~~~~~~~vw~~~~~ 223 (374)
T PRK06617 161 KVRSHYFANEIEKPYQTALTFNIKHEK-PHENCAMEHFLP----------------LGPFALLPLKDQYASSVIWSTSSD 223 (374)
T ss_pred hhHHhcCCCcccccCCeEEEEEEeccC-CCCCEEEEEecC----------------CCCEEEeECCCCCeEEEEEeCCHH
Confidence 999987554322122334444443211 112111121100 1447778988763 222111100
Q ss_pred --C-CCCCChHHHHHHHHHHHhhcCCccccc-cccceEeecCCCC-CCC-CCCceeEeeccCCCCCCCCcHHHHHHHHhc
Q 014377 229 --A-RPGVPMKDIQERMVARLKHLGIKVRSI-EEDEHCVIPMGGP-LPV-LPQRVVGIGGTAGMVHPSTGYMVARTLAAA 302 (426)
Q Consensus 229 --~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~-~~~-~~~~v~liGdAa~~~~P~~G~G~~~a~~~a 302 (426)
. ....+.+++.+.+...+... ..++ ...+...+|+... ... ..+|++|+|||||.++|+.|||+|+|++|+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gl~Da 300 (374)
T PRK06617 224 QAALIVNLPVEEVRFLTQRNAGNS---LGKITIDSEISSFPLKARIANRYFHNRIVLIADTAHTVHPLAGQGLNQGIKDI 300 (374)
T ss_pred HHHHHHcCCHHHHHHHHHHhhchh---cCceeeccceeEEEeeeeeccceecCCEEEEEcccccCCCCccccHHHHHHHH
Confidence 0 01122344444443333211 1222 2223556676433 222 469999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCchhhhHHHHHH
Q 014377 303 PIVANAIVRSLSSDRSISGHKLSAEVWK 330 (426)
Q Consensus 303 ~~la~~i~~~l~~~~~~~~~~~y~~~~~ 330 (426)
..|+++|. .. ..++.|++.++
T Consensus 301 ~~La~~L~----~~---~~L~~Ye~~R~ 321 (374)
T PRK06617 301 EILSMIVS----NN---GTLQEYQKLRQ 321 (374)
T ss_pred HHHHHHHc----Cc---chHHHHHHHHh
Confidence 99999874 11 46788886643
No 29
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=5e-31 Score=254.58 Aligned_cols=301 Identities=19% Similarity=0.251 Sum_probs=188.9
Q ss_pred cCcEEEECchHHHHHHHHHHHHCC--CcEEEEcCCCCCCCC-Ccccc--hh---HHHhhcCchhhhhh-ccCCeEEEecC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAG--LSVCSIDPSPKLIWP-NNYGV--WV---DEFEAMDLLDCLDT-TWSGAVVHIDD 79 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G--~~V~liE~~~~~~~~-~~~g~--~~---~~l~~~~~~~~~~~-~~~~~~~~~~~ 79 (426)
.+||+||||||+|+++|+.|++.| ++|+|+|+.+..... ...+. +. ..++.+|+.+.+.. ..+...+.+.+
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~ 80 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITD 80 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEe
Confidence 489999999999999999999995 999999998753221 12222 22 34788888654432 21211111111
Q ss_pred --CC------------ccccCCCcc-ccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEE
Q 014377 80 --NT------------KKDLDRPYG-RVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVL 143 (426)
Q Consensus 80 --~~------------~~~~~~~~~-~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV 143 (426)
.. ......+++ .++|..|.+.|.+.+.+.|++++ +++|++++.+++.+.|++.+|.+++||+||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI 160 (403)
T PRK07333 81 SRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLV 160 (403)
T ss_pred CCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEE
Confidence 00 000122343 57999999999999988999999 999999998888888999899999999999
Q ss_pred ECCCCCCccccccCCCCCcee-eEEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeEEE
Q 014377 144 DATGFSRCLVQYDKPYNPGYQ-VAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFL 222 (426)
Q Consensus 144 ~AdG~~s~~r~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v 222 (426)
+|||.+|.+|+.++....... ...++...+.... .........+. ..+++|.+|.+++++.+
T Consensus 161 ~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----------------~~g~~~~~Pl~~~~~~~ 223 (403)
T PRK07333 161 AADGARSKLRELAGIKTVGWDYGQSGIVCTVEHER-PHGGRAEEHFL----------------PAGPFAILPLKGNRSSL 223 (403)
T ss_pred EcCCCChHHHHHcCCCcccccCCCEEEEEEEEcCC-CCCCEEEEEeC----------------CCCceEEeECCCCCeEE
Confidence 999999999987765432211 1233333333211 11111111110 13668889998887543
Q ss_pred ecccCcC---C-CCCChHHHHHHHHHHHhhcCCccccccccceEeecCCCCC-CC-CCCceeEeeccCCCCCCCCcHHHH
Q 014377 223 EETSLVA---R-PGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPMGGPL-PV-LPQRVVGIGGTAGMVHPSTGYMVA 296 (426)
Q Consensus 223 ~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~-~~~~v~liGdAa~~~~P~~G~G~~ 296 (426)
....... . ...+.+...+.+.+.+......+. .......+|+.... +. ..+|++++|||||.++|++|||+|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n 301 (403)
T PRK07333 224 VWTERTADAERLVALDDLVFEAELEQRFGHRLGELK--VLGKRRAFPLGLTLARSFVAPRFALVGDAAHGIHPIAGQGLN 301 (403)
T ss_pred EEECCHHHHHHHHCCCHHHHHHHHHHHhhhhcCceE--eccCccEeechhhhhhhccCCCEEEEechhhcCCCccccchh
Confidence 2211000 0 011223333444444332211111 11122334543221 22 468999999999999999999999
Q ss_pred HHHHhcHHHHHHHHHhcCCC---CCCchhhhHHHH
Q 014377 297 RTLAAAPIVANAIVRSLSSD---RSISGHKLSAEV 328 (426)
Q Consensus 297 ~a~~~a~~la~~i~~~l~~~---~~~~~~~~y~~~ 328 (426)
+|++||..|+++|.+.++.+ .....++.|++.
T Consensus 302 ~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Ye~~ 336 (403)
T PRK07333 302 LGLKDVAALAEVVVEAARLGLDIGSLDVLERYQRW 336 (403)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 99999999999999877532 123567788864
No 30
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=100.00 E-value=7.9e-31 Score=251.86 Aligned_cols=301 Identities=16% Similarity=0.195 Sum_probs=191.8
Q ss_pred cEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCC------Ccccch---hHHHhhcCchhhhhh--c--cCCeEEEe
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWP------NNYGVW---VDEFEAMDLLDCLDT--T--WSGAVVHI 77 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~------~~~g~~---~~~l~~~~~~~~~~~--~--~~~~~~~~ 77 (426)
||+||||||+|+++|+.|++.|++|+|+||++.+... +..+.. ...++++|+.+.+.. . +....+..
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 7999999999999999999999999999999864321 112222 234778887654432 1 22222222
Q ss_pred cCCCc-ccc-----C-CCc-cccCHHHHHHHHHHHHHhCC-cEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCC
Q 014377 78 DDNTK-KDL-----D-RPY-GRVNRKLLKSKMLQKCITNG-VKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATG 147 (426)
Q Consensus 78 ~~~~~-~~~-----~-~~~-~~v~r~~l~~~L~~~~~~~g-v~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG 147 (426)
..... ... . ..+ ..++|..|.+.|.+.+.+.| ++++ +++|++++.+++++.+++.+|+++.+|+||+|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG 160 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADG 160 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCC
Confidence 21110 001 1 112 24899999999999998876 9998 9999999988888889999999999999999999
Q ss_pred CCCccccccCCCCCceee-EEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeEEEeccc
Q 014377 148 FSRCLVQYDKPYNPGYQV-AYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETS 226 (426)
Q Consensus 148 ~~s~~r~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~ 226 (426)
.+|.+|+.++........ ..++.......... .......+. ..++++.+|..+++..+....
T Consensus 161 ~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----------------~~g~~~~~p~~~~~~~~~~~~ 223 (385)
T TIGR01988 161 ANSKVRQLAGIPTTGWDYGQSAVVANVKHERPH-QGTAWERFT----------------PTGPLALLPLPDNRSSLVWTL 223 (385)
T ss_pred CCCHHHHHcCCCccccccCCeEEEEEEEecCCC-CCEEEEEec----------------CCCCEEEeECCCCCeEEEEEC
Confidence 999999877543221111 12222222211111 111111110 125677889988875443321
Q ss_pred CcC----CCCCChHHHHHHHHHHHhhcCCccccccccceEeecCCCCC-C-CCCCceeEeeccCCCCCCCCcHHHHHHHH
Q 014377 227 LVA----RPGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPMGGPL-P-VLPQRVVGIGGTAGMVHPSTGYMVARTLA 300 (426)
Q Consensus 227 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~-~~~~~v~liGdAa~~~~P~~G~G~~~a~~ 300 (426)
... ....+.+++.+.+.+.+........ .......+|+.... + ...++++++|||||.++|++|+|+++|++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~LiGDAah~~~P~~G~G~~~Ai~ 301 (385)
T TIGR01988 224 PPEEAERLLALSDEEFLAELQRAFGSRLGAIT--LVGERHAFPLSLTHAKRYVAPRLALIGDAAHTIHPLAGQGLNLGLR 301 (385)
T ss_pred CHHHHHHHHcCCHHHHHHHHHHHHhhhcCceE--eccCcceeechhhhhhheecCceEEEecccccCCccccchhhhhHH
Confidence 110 0123455666666665543311111 12234455654322 2 24589999999999999999999999999
Q ss_pred hcHHHHHHHHHhcCCCCC---CchhhhHHHHHH
Q 014377 301 AAPIVANAIVRSLSSDRS---ISGHKLSAEVWK 330 (426)
Q Consensus 301 ~a~~la~~i~~~l~~~~~---~~~~~~y~~~~~ 330 (426)
||..||+.|.+.+..+.+ ...+..|++.++
T Consensus 302 da~~La~~L~~~~~~~~~~~~~~~l~~y~~~r~ 334 (385)
T TIGR01988 302 DVAALAEVLEDARRRGEDIGSPRVLQRYERRRR 334 (385)
T ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 999999999987653321 246777886654
No 31
>PRK09126 hypothetical protein; Provisional
Probab=100.00 E-value=6.5e-31 Score=252.79 Aligned_cols=304 Identities=16% Similarity=0.158 Sum_probs=186.7
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCC--CCccc----ch---hHHHhhcCchhhhhhc--cC--CeE
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIW--PNNYG----VW---VDEFEAMDLLDCLDTT--WS--GAV 74 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~--~~~~g----~~---~~~l~~~~~~~~~~~~--~~--~~~ 74 (426)
+++||+||||||+|+++|+.|+++|++|+|+|+.+.+.. +..+| .. ...|+.+|+.+.+... .+ ...
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~ 81 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAK 81 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEE
Confidence 369999999999999999999999999999999876421 22222 11 2347788876544211 11 112
Q ss_pred EEecCCCc-ccc------CCCcc-ccCHHHHHHHHHHHHHh-CCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEE
Q 014377 75 VHIDDNTK-KDL------DRPYG-RVNRKLLKSKMLQKCIT-NGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLD 144 (426)
Q Consensus 75 ~~~~~~~~-~~~------~~~~~-~v~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~ 144 (426)
+....... ... ...++ .+++..+.+.|.+.+.+ .|++++ +++|++++.+++.+.|.+++|++++||+||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~ 161 (392)
T PRK09126 82 VLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVA 161 (392)
T ss_pred EEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEE
Confidence 22111100 001 11222 36888999999988865 789999 9999999988888888888999999999999
Q ss_pred CCCCCCccccccCCCCCceee-EEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeEEEe
Q 014377 145 ATGFSRCLVQYDKPYNPGYQV-AYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLE 223 (426)
Q Consensus 145 AdG~~s~~r~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~ 223 (426)
|||.+|.+|+.++........ ...+...+.... +........+ .. .++++.+|..++.+.+.
T Consensus 162 AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------------~~----~~~~~~~P~~~~~~~~~ 224 (392)
T PRK09126 162 ADSRFSATRRQLGIGADMHDFGRTMLVCRMRHEL-PHHHTAWEWF------------GY----GQTLALLPLNGHLSSLV 224 (392)
T ss_pred eCCCCchhhHhcCCCccccccCCeEEEEEEeccC-CCCCEEEEEe------------cC----CCCeEEeECCCCCEEEE
Confidence 999999999887543211110 111111222111 1111111111 00 24577889887765443
Q ss_pred cccCcCC----CCCChHHHHHHHHHHHhhcCCccccccccceEeecCCCC-CCC-CCCceeEeeccCCCCCCCCcHHHHH
Q 014377 224 ETSLVAR----PGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPMGGP-LPV-LPQRVVGIGGTAGMVHPSTGYMVAR 297 (426)
Q Consensus 224 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~-~~~~v~liGdAa~~~~P~~G~G~~~ 297 (426)
.+..... ...+.+++.+.+.+.+........ .......+|+... .+. ..+|++++|||||.++|++|||+|.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~ 302 (392)
T PRK09126 225 LTLPPDQIEALLALDPEAFAAEVTARFKGRLGAMR--LVSSRHAYPLVAVYAHRFVAKRFALIGDAAVGMHPVTAHGFNL 302 (392)
T ss_pred EECCHHHHHHHHcCCHHHHHHHHHHHHhhhccCeE--EcCCCcEeechHHHHHHHhhcceEEEehhhhcCCCcccchhhh
Confidence 3221110 122344454555444443211111 1112233443221 122 4689999999999999999999999
Q ss_pred HHHhcHHHHHHHHHhcCCCCC---CchhhhHHHHHH
Q 014377 298 TLAAAPIVANAIVRSLSSDRS---ISGHKLSAEVWK 330 (426)
Q Consensus 298 a~~~a~~la~~i~~~l~~~~~---~~~~~~y~~~~~ 330 (426)
|++||..|+++|.+.++.+.. .+.+..|++.++
T Consensus 303 ai~da~~la~~L~~~~~~~~~~~~~~~l~~Y~~~r~ 338 (392)
T PRK09126 303 GLKGQDILARLILAAARRGQDIGAASLLERYERKHR 338 (392)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence 999999999999987743222 245778886654
No 32
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=100.00 E-value=7.3e-32 Score=256.19 Aligned_cols=304 Identities=21% Similarity=0.274 Sum_probs=177.6
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccch-----hHHHhhcCchhhhhhcc---CCeEEEecCC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVW-----VDEFEAMDLLDCLDTTW---SGAVVHIDDN 80 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~-----~~~l~~~~~~~~~~~~~---~~~~~~~~~~ 80 (426)
++||+||||||+|+++|+.|+++|++|+|||+++.+.... +|.. ...|+.+|+.+.+...- ......+...
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~-~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~ 79 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKG-RGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDG 79 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSS-SSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEE
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccccccc-cccccccccccccccccchhhhhhhcccccceeeEeecc
Confidence 4799999999999999999999999999999988753322 3332 23477888766443211 1111111110
Q ss_pred ------------Ccc----ccCCC-ccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcC---C--cEE
Q 014377 81 ------------TKK----DLDRP-YGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICND---G--VTI 137 (426)
Q Consensus 81 ------------~~~----~~~~~-~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~---g--~~i 137 (426)
... ....+ ...++|..|++.|.+.+.+.|+++. ++++++++.+++++++.+.+ | +++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i 159 (356)
T PF01494_consen 80 ISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETI 159 (356)
T ss_dssp TTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEE
T ss_pred cCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEE
Confidence 000 11112 2347999999999999999889999 99999999998887655433 3 379
Q ss_pred EcCEEEECCCCCCccccccCCCCCceeeE--EEEE-EEeecCCCC--CCceeeeecCCCcCCCchhhhccCCCCCcEEEE
Q 014377 138 QAAVVLDATGFSRCLVQYDKPYNPGYQVA--YGIL-AEVEEHPFD--LDKMVFMDWRDSHLNNNSELKEANSKIPTFLYA 212 (426)
Q Consensus 138 ~a~~vV~AdG~~s~~r~~~~~~~~~~~~~--~g~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (426)
+||+||+|||.+|.+|+.+.......... .++. +..+. ... .+...+.... ..+++++
T Consensus 160 ~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----------------~~~~~~~ 222 (356)
T PF01494_consen 160 EADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFDS-DLSDPWEDHCFIYSP----------------PSGGFAI 222 (356)
T ss_dssp EESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEEC-HSHTTTSCEEEEEEE----------------TTEEEEE
T ss_pred EEeeeecccCcccchhhhccccccCcccccccccccccccc-ccccccccccccccc----------------cccceeE
Confidence 99999999999999999886553222211 1221 11111 111 1111111100 0245688
Q ss_pred eeCCC-Ce--EEEecccCcCCCCCChHHHHHHHHHHHhhc-CCccccccccceEeecCCCC--CCCCCCceeEeeccCCC
Q 014377 213 MPFSS-NR--IFLEETSLVARPGVPMKDIQERMVARLKHL-GIKVRSIEEDEHCVIPMGGP--LPVLPQRVVGIGGTAGM 286 (426)
Q Consensus 213 ~P~~~-~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~--~~~~~~~v~liGdAa~~ 286 (426)
+|..+ +. ..+.................+.+.+.+... ..............+++... .+...+||+|+|||||.
T Consensus 223 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAAh~ 302 (356)
T PF01494_consen 223 IPLENGDRSRFVWFLPFDESKEERPEEFSPEELFANLPEIFGPDLLETEIDEISAWPIPQRVADRWVKGRVLLIGDAAHA 302 (356)
T ss_dssp EEETTTTEEEEEEEEETTTTTCCSTHCHHHHHHHHHHHHHHHTCHHHHEEEEEEEEEEEEEEESSSEETTEEE-GGGTEE
T ss_pred eeccCCccceEEEeeeccccccccccccccccccccccccccccccccccccccccccccccccccccceeEEeccceee
Confidence 88877 22 222222222222222222333333332221 11111111112223333211 12235899999999999
Q ss_pred CCCCCcHHHHHHHHhcHHHHHHHHHhcCCCCCCchhhhHHHHHH
Q 014377 287 VHPSTGYMVARTLAAAPIVANAIVRSLSSDRSISGHKLSAEVWK 330 (426)
Q Consensus 287 ~~P~~G~G~~~a~~~a~~la~~i~~~l~~~~~~~~~~~y~~~~~ 330 (426)
++|++|+|+|.||+||..|++.|.+.+++......++.|++.++
T Consensus 303 ~~P~~GqG~n~Ai~da~~La~~L~~~~~g~~~~~~l~~Y~~~r~ 346 (356)
T PF01494_consen 303 MDPFSGQGINMAIEDAAALAELLAAALKGEASEEALKAYEQERR 346 (356)
T ss_dssp E-CCTSHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHH
T ss_pred ecccccCCCCcccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999998874444356778886654
No 33
>PRK07045 putative monooxygenase; Reviewed
Probab=100.00 E-value=1.2e-30 Score=250.22 Aligned_cols=305 Identities=18% Similarity=0.210 Sum_probs=183.2
Q ss_pred CCCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCC-Ccccc---hhHHHhhcCchhhhhhcc----CCeEEEe
Q 014377 6 KGLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWP-NNYGV---WVDEFEAMDLLDCLDTTW----SGAVVHI 77 (426)
Q Consensus 6 ~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~-~~~g~---~~~~l~~~~~~~~~~~~~----~~~~~~~ 77 (426)
++.++||+||||||+|+++|+.|++.|++|+|+|+.+.+... ..... -...|+.+|+.+.+.... ....+.
T Consensus 2 ~~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~- 80 (388)
T PRK07045 2 KNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLY- 80 (388)
T ss_pred CCceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEe-
Confidence 356799999999999999999999999999999999865321 11111 123477778765433211 111111
Q ss_pred cCCCc-ccc------CCCc-cccCHHHHHHHHHHHHHh-CCcEEE-EEEEEEEEEeCCe--EEEEEcCCcEEEcCEEEEC
Q 014377 78 DDNTK-KDL------DRPY-GRVNRKLLKSKMLQKCIT-NGVKFH-QAKVIKVIHEESK--SLLICNDGVTIQAAVVLDA 145 (426)
Q Consensus 78 ~~~~~-~~~------~~~~-~~v~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~~~~--~~v~~~~g~~i~a~~vV~A 145 (426)
.+... ... ...+ ..++|..|.+.|.+.+.. .|++++ +++|++++.++++ +.|++.+|+++++|+||+|
T Consensus 81 ~~g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgA 160 (388)
T PRK07045 81 HDKELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGA 160 (388)
T ss_pred cCCcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEEC
Confidence 11110 000 1122 247899999999999865 789998 9999999987554 4678889999999999999
Q ss_pred CCCCCcccccc-CCCC--Cce--eeEEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeE
Q 014377 146 TGFSRCLVQYD-KPYN--PGY--QVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRI 220 (426)
Q Consensus 146 dG~~s~~r~~~-~~~~--~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~ 220 (426)
||.+|.+|+++ +... ..+ ...++... .. ...+.....+ + .. ..++.|.+|.+++..
T Consensus 161 DG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~--~-~~--------------~~~~~~~~p~~~~~~ 221 (388)
T PRK07045 161 DGARSMIRDDVLRMPAERVPYATPMAFGTIA-LT-DSVRECNRLY--V-DS--------------NQGLAYFYPIGDQAT 221 (388)
T ss_pred CCCChHHHHHhhCCCcccCCCCcceeEEEEe-cc-CCccccceEE--E-cC--------------CCceEEEEEcCCCcE
Confidence 99999999963 2221 111 12333322 11 1111100011 1 00 025678889876653
Q ss_pred EEecccCcCC-----CCCChHHHHHHHHHHHhhcCCc-cccccc-cceEeecCCCC-CCC-CCCceeEeeccCCCCCCCC
Q 014377 221 FLEETSLVAR-----PGVPMKDIQERMVARLKHLGIK-VRSIEE-DEHCVIPMGGP-LPV-LPQRVVGIGGTAGMVHPST 291 (426)
Q Consensus 221 ~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~p~~~~-~~~-~~~~v~liGdAa~~~~P~~ 291 (426)
.+........ .....+++.+.+.+++...... +..+.. .....+|+... .+. ..+|++++|||||.++|++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~ 301 (388)
T PRK07045 222 RLVVSFPADEMQGYLADTTRTKLLARLNEFVGDESADAMAAIGAGTAFPLIPLGRMNLDRYHKRNVVLLGDAAHSIHPIT 301 (388)
T ss_pred EEEEEeccccchhccCCCCHHHHHHHHhhhcCccchHHHhccCcccccceeecCccccccccCCCEEEEEccccccCCCc
Confidence 2222111010 1123445555555544221100 111111 11222344432 233 4689999999999999999
Q ss_pred cHHHHHHHHhcHHHHHHHHHhcCCCCC-CchhhhHHHHHH
Q 014377 292 GYMVARTLAAAPIVANAIVRSLSSDRS-ISGHKLSAEVWK 330 (426)
Q Consensus 292 G~G~~~a~~~a~~la~~i~~~l~~~~~-~~~~~~y~~~~~ 330 (426)
|||+|.|++||..||++|...+.+... ...++.|++.++
T Consensus 302 GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~L~~Ye~~R~ 341 (388)
T PRK07045 302 GQGMNLAIEDAGELGACLDLHLSGQIALADALERFERIRR 341 (388)
T ss_pred cccHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhh
Confidence 999999999999999999987654322 245677876543
No 34
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=100.00 E-value=9.7e-31 Score=260.29 Aligned_cols=304 Identities=16% Similarity=0.155 Sum_probs=185.2
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCC-CCCcccchh---HHHhhcCchhhhhh-c--cCCeEEEecC
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLI-WPNNYGVWV---DEFEAMDLLDCLDT-T--WSGAVVHIDD 79 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~-~~~~~g~~~---~~l~~~~~~~~~~~-~--~~~~~~~~~~ 79 (426)
+.++||+||||||+|+++|+.|++.|++|+|||+.+.+. .++..+.+. ..|+.+|+.+.+.. . +....+....
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 87 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAK 87 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCC
Confidence 457999999999999999999999999999999987542 233344443 34677887654331 1 2222222111
Q ss_pred CCcc-ccC--------CCc-cccCHHHHHHHHHHHHHh-CCcEEE-EEEEEEEEEeCCeEEEEEc--CC--cEEEcCEEE
Q 014377 80 NTKK-DLD--------RPY-GRVNRKLLKSKMLQKCIT-NGVKFH-QAKVIKVIHEESKSLLICN--DG--VTIQAAVVL 143 (426)
Q Consensus 80 ~~~~-~~~--------~~~-~~v~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~~~~~~v~~~--~g--~~i~a~~vV 143 (426)
.... ... .+. ..+++..+++.|.+.+.+ .|++++ +++|+++++++++++|++. +| .+++||+||
T Consensus 88 g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vV 167 (538)
T PRK06183 88 GRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVV 167 (538)
T ss_pred CCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEE
Confidence 1100 000 111 136899999999999887 599999 9999999999888888776 46 479999999
Q ss_pred ECCCCCCccccccCCCCCceeeEEEEE-EEe--ecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeE
Q 014377 144 DATGFSRCLVQYDKPYNPGYQVAYGIL-AEV--EEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRI 220 (426)
Q Consensus 144 ~AdG~~s~~r~~~~~~~~~~~~~~g~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~ 220 (426)
+|||.+|.+|+.++....+......+. +.+ ...+..... ....+ .+ .+.+..+|..++..
T Consensus 168 gADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~---------------~~~~~~~p~~~~~~ 230 (538)
T PRK06183 168 GCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIANDPLGGPH-TYQYC-DP---------------ARPYTSVRLPHGRR 230 (538)
T ss_pred ecCCCchhHHHHcCCeeeCCCccceEEEEEEecccCccCCCc-eEEEE-CC---------------CCCEEEEEcCCCeE
Confidence 999999999998866443322222221 121 111100001 01100 00 13344566665543
Q ss_pred EEecccC--cCC-CCCChHHHHHHHHHHHhhcCCccccccccceEeecCCCC-CCC-CCCceeEeeccCCCCCCCCcHHH
Q 014377 221 FLEETSL--VAR-PGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPMGGP-LPV-LPQRVVGIGGTAGMVHPSTGYMV 295 (426)
Q Consensus 221 ~v~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~-~~~~v~liGdAa~~~~P~~G~G~ 295 (426)
.+..... ... ...+.+.+++.+..+.. .....++.. ...+++... ... ..+||+|+|||||.++|++|||+
T Consensus 231 r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~--~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GQG~ 306 (538)
T PRK06183 231 RWEFMLLPGETEEQLASPENVWRLLAPWGP--TPDDAELIR--HAVYTFHARVADRWRSGRVLLAGDAAHLMPPFAGQGM 306 (538)
T ss_pred EEEEEeCCCCChhhcCCHHHHHHHHHhhCC--CCcceEEEE--EEeeeEccEEhhhhccCCEEEEechhhcCCCccccch
Confidence 2211111 001 11133444444433210 111112221 222222211 122 45899999999999999999999
Q ss_pred HHHHHhcHHHHHHHHHhcCCCCCCchhhhHHHHHHh
Q 014377 296 ARTLAAAPIVANAIVRSLSSDRSISGHKLSAEVWKD 331 (426)
Q Consensus 296 ~~a~~~a~~la~~i~~~l~~~~~~~~~~~y~~~~~~ 331 (426)
|++++||.+||+.|+..+++......++.|++.++.
T Consensus 307 n~gi~DA~~La~kLa~~~~g~~~~~~L~~Ye~eR~p 342 (538)
T PRK06183 307 NSGIRDAANLAWKLAAVLRGRAGDALLDTYEQERRP 342 (538)
T ss_pred hhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 999999999999999877654444678889877654
No 35
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=100.00 E-value=1.1e-30 Score=250.36 Aligned_cols=301 Identities=16% Similarity=0.165 Sum_probs=184.1
Q ss_pred cEEEECchHHHHHHHHHHHHCC-CcEEEEcCCCCCCCC-----Ccccch---hHHHhhcCchhhhhhc-cCCeEEEecCC
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAG-LSVCSIDPSPKLIWP-----NNYGVW---VDEFEAMDLLDCLDTT-WSGAVVHIDDN 80 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G-~~V~liE~~~~~~~~-----~~~g~~---~~~l~~~~~~~~~~~~-~~~~~~~~~~~ 80 (426)
||+||||||+|+++|+.|+++| ++|+|+|+.+.+... +..+.+ ...++.+|+.+.+... .+...+.+...
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 8999999999999999999999 999999998765321 111222 2357888886654321 11111221111
Q ss_pred ---Ccc-----ccCC-Cc-cccCHHHHHHHHHHHHHh-CCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCC
Q 014377 81 ---TKK-----DLDR-PY-GRVNRKLLKSKMLQKCIT-NGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGF 148 (426)
Q Consensus 81 ---~~~-----~~~~-~~-~~v~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~ 148 (426)
... .... +. ..++|..|.+.|.+.+.+ .|++++ +++|++++.++++++|++.+|++++||+||+|||.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~ 160 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGA 160 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCC
Confidence 000 1111 11 248999999999999988 599999 99999999888888899988989999999999999
Q ss_pred CCccccccCCCCCceee-EEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCC-eEEEeccc
Q 014377 149 SRCLVQYDKPYNPGYQV-AYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSN-RIFLEETS 226 (426)
Q Consensus 149 ~s~~r~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~-~~~v~~~~ 226 (426)
+|.+|+.++........ ...+...+... .+.....+..+. ..+.++.+|..++ ...+....
T Consensus 161 ~S~vr~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----------------~~g~~~~~p~~~~~~~~~~~~~ 223 (382)
T TIGR01984 161 NSKVRELLSIPTEEHDYNQTALIANIRHE-QPHQGCAFERFT----------------PHGPLALLPLKDNYRSSLVWCL 223 (382)
T ss_pred ChHHHHHcCCCCcccccCCEEEEEEEEec-CCCCCEEEEeeC----------------CCCCeEECcCCCCCCEEEEEEC
Confidence 99999876543221111 11222222211 111111111110 0244677888776 33221111
Q ss_pred Cc---C-CCCCChHHHHHHHHHHHhhcCCccccccccceEeecCCCC-CCC-CCCceeEeeccCCCCCCCCcHHHHHHHH
Q 014377 227 LV---A-RPGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPMGGP-LPV-LPQRVVGIGGTAGMVHPSTGYMVARTLA 300 (426)
Q Consensus 227 ~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~-~~~~v~liGdAa~~~~P~~G~G~~~a~~ 300 (426)
.. . ....+.+++.+.+.+.+......... ......+|+... .+. ..+|++++|||||.++|++|+|+|.|++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~al~ 301 (382)
T TIGR01984 224 PSKQADTIANLPDAEFLAELQQAFGWRLGKITQ--VGERKTYPLKLRIAETHVHPRVVLIGNAAQTLHPIAGQGFNLGLR 301 (382)
T ss_pred CHHHHHHHHcCCHHHHHHHHHHHHhhhccCeEE--cCCccEeecchhhhhheecCCEEEEeecccccCCccccchhhhHH
Confidence 00 0 01224444555555444321111111 112233443322 122 4589999999999999999999999999
Q ss_pred hcHHHHHHHHHhcCCCCCCchhhhHHHHHH
Q 014377 301 AAPIVANAIVRSLSSDRSISGHKLSAEVWK 330 (426)
Q Consensus 301 ~a~~la~~i~~~l~~~~~~~~~~~y~~~~~ 330 (426)
||..|+++|............++.|++.++
T Consensus 302 Da~~La~~L~~~~~~~~~~~~l~~Y~~~r~ 331 (382)
T TIGR01984 302 DVETLAEVLIDARIDLGTYALLQEYLRRRQ 331 (382)
T ss_pred HHHHHHHHHHHhccCccCHHHHHHHHHHHH
Confidence 999999999876522222245777886654
No 36
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.98 E-value=3.8e-30 Score=246.16 Aligned_cols=300 Identities=15% Similarity=0.188 Sum_probs=183.1
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCC-------Ccccch---hHHHhhcCchhhhhh--ccCCeEEE
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWP-------NNYGVW---VDEFEAMDLLDCLDT--TWSGAVVH 76 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~-------~~~g~~---~~~l~~~~~~~~~~~--~~~~~~~~ 76 (426)
.+||+||||||+|+++|+.|++.|++|+|||+.+...+. +..+.+ ...|+.+|+.+.+.. ..+...+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~ 82 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLE 82 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEE
Confidence 489999999999999999999999999999987532111 111222 245788888765532 11211111
Q ss_pred e--cCCCccc-----c-CCCcc-ccCHHHHHHHHHHHHHh-CCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEEC
Q 014377 77 I--DDNTKKD-----L-DRPYG-RVNRKLLKSKMLQKCIT-NGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDA 145 (426)
Q Consensus 77 ~--~~~~~~~-----~-~~~~~-~v~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~A 145 (426)
. ....... . ...++ .+.+..|...|.+++.+ .|++++ +++|++++.++++++|++++|.+++||+||+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgA 162 (384)
T PRK08849 83 TWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGA 162 (384)
T ss_pred EEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEe
Confidence 1 1111000 0 11122 35666899899888766 679999 99999999988889999999999999999999
Q ss_pred CCCCCccccccCCCCCceee-EEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCe---EE
Q 014377 146 TGFSRCLVQYDKPYNPGYQV-AYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNR---IF 221 (426)
Q Consensus 146 dG~~s~~r~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~---~~ 221 (426)
||.+|.+|+.++.....+.. ..++.+.+....... ...+..+... +-...+|..++. +|
T Consensus 163 DG~~S~vR~~~gi~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~----------------g~~~~~pl~~~~~~~~~ 225 (384)
T PRK08849 163 DGANSQVRQLAGIGITAWDYRQHCMLINVETEQPQQ-DITWQQFTPS----------------GPRSFLPLCGNQGSLVW 225 (384)
T ss_pred cCCCchhHHhcCCCceeccCCCeEEEEEEEcCCCCC-CEEEEEeCCC----------------CCEEEeEcCCCceEEEE
Confidence 99999999987654322211 223333333211111 1122211100 112224654432 22
Q ss_pred EecccCc-CCCCCChHHHHHHHHHHHhhcCCccccccccceEeecCCCCC-CC-CCCceeEeeccCCCCCCCCcHHHHHH
Q 014377 222 LEETSLV-ARPGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPMGGPL-PV-LPQRVVGIGGTAGMVHPSTGYMVART 298 (426)
Q Consensus 222 v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~-~~~~v~liGdAa~~~~P~~G~G~~~a 298 (426)
....... .....+.+.+.+.+.+.++... .++.......+|+.... +. ..+|++++|||||.++|+.|||+|+|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~grv~LlGDAAH~~~P~~GQG~n~a 302 (384)
T PRK08849 226 YDSPKRIKQLSAMNPEQLRSEILRHFPAEL---GEIKVLQHGSFPLTRRHAQQYVKNNCVLLGDAAHTINPLAGQGVNLG 302 (384)
T ss_pred ECCHHHHHHHHcCCHHHHHHHHHHHhhhhh---CcEEeccceEeeccccccchhccCCEEEEEcccccCCCCccchHhHH
Confidence 2111000 0122355666666666554321 12112234556654322 23 46899999999999999999999999
Q ss_pred HHhcHHHHHHHHHhcCCCCCCchhhhHHHHHH
Q 014377 299 LAAAPIVANAIVRSLSSDRSISGHKLSAEVWK 330 (426)
Q Consensus 299 ~~~a~~la~~i~~~l~~~~~~~~~~~y~~~~~ 330 (426)
++||..|++.+.+. +......+..|++.++
T Consensus 303 l~Da~~L~~~l~~~--~~~~~~~L~~Ye~~R~ 332 (384)
T PRK08849 303 FKDVDVLLAETEKQ--GVLNDASFARYERRRR 332 (384)
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHHHh
Confidence 99999999988642 1122246778886644
No 37
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.98 E-value=2.1e-30 Score=248.92 Aligned_cols=304 Identities=14% Similarity=0.167 Sum_probs=189.5
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCC------Ccccch---hHHHhhcCchhhhh-hcc-CCeEEE
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWP------NNYGVW---VDEFEAMDLLDCLD-TTW-SGAVVH 76 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~------~~~g~~---~~~l~~~~~~~~~~-~~~-~~~~~~ 76 (426)
+++||+||||||+|+++|+.|++.|++|+|+|+++.+... +..+.. ...++.+|+.+.+. ..+ +...+.
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 83 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMR 83 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEE
Confidence 3589999999999999999999999999999998764320 111112 23467777765442 122 111111
Q ss_pred e--cCCCcc-------ccCCCccccCHHHHHHHHHHHHHhCC-cEEEEEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECC
Q 014377 77 I--DDNTKK-------DLDRPYGRVNRKLLKSKMLQKCITNG-VKFHQAKVIKVIHEESKSLLICNDGVTIQAAVVLDAT 146 (426)
Q Consensus 77 ~--~~~~~~-------~~~~~~~~v~r~~l~~~L~~~~~~~g-v~~~~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~Ad 146 (426)
+ ...... .....+..+++..+.+.|.+.+.+.| +++++++|++++.+++.+.|++.+|.+++||+||+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~ad 163 (388)
T PRK07608 84 VFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWFPARAQGLEVDPDAATLTLADGQVLRADLVVGAD 163 (388)
T ss_pred EEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEEcceeEEEEecCCeEEEEECCCCEEEeeEEEEeC
Confidence 1 111000 01112235789999999999998876 8877888999988888888999889899999999999
Q ss_pred CCCCccccccCCCCCcee-eEEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeEEEecc
Q 014377 147 GFSRCLVQYDKPYNPGYQ-VAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEET 225 (426)
Q Consensus 147 G~~s~~r~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~ 225 (426)
|.+|.+|+.++....... ...++...++.... .....+..+ . ..++++++|..++++.+...
T Consensus 164 G~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~---------------~~~~~~~~p~~~~~~~~~~~ 226 (388)
T PRK07608 164 GAHSWVRSQAGIKAERRPYRQTGVVANFKAERP-HRGTAYQWF-R---------------DDGILALLPLPDGHVSMVWS 226 (388)
T ss_pred CCCchHHHhcCCCccccccCCEEEEEEEEecCC-CCCEEEEEe-c---------------CCCCEEEeECCCCCeEEEEE
Confidence 999999987754332211 12334333332211 111111111 0 03678889999887654322
Q ss_pred cCcC---C-CCCChHHHHHHHHHHHhhcCCccccccccceEeecCCCC-CCC-CCCceeEeeccCCCCCCCCcHHHHHHH
Q 014377 226 SLVA---R-PGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPMGGP-LPV-LPQRVVGIGGTAGMVHPSTGYMVARTL 299 (426)
Q Consensus 226 ~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~-~~~~v~liGdAa~~~~P~~G~G~~~a~ 299 (426)
.... . ...+.+++.+.+.+.+........ .. .....+|+... .+. ..+|++++|||||.++|++|||+|.|+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~rv~liGDAAh~~~P~~GqG~n~ai 304 (388)
T PRK07608 227 ARTAHADELLALSPEALAARVERASGGRLGRLE-CV-TPAAGFPLRLQRVDRLVAPRVALVGDAAHLIHPLAGQGMNLGL 304 (388)
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHHhcCCce-ec-CCcceeecchhhhhhhhcCceEEEeccccccCCccccccchhH
Confidence 1100 0 122445666666655443111111 11 11223454322 223 458999999999999999999999999
Q ss_pred HhcHHHHHHHHHhcCCCC--CCchhhhHHHHHH
Q 014377 300 AAAPIVANAIVRSLSSDR--SISGHKLSAEVWK 330 (426)
Q Consensus 300 ~~a~~la~~i~~~l~~~~--~~~~~~~y~~~~~ 330 (426)
+||..||+.|.+.....+ ..+.++.|++.++
T Consensus 305 ~da~~La~~L~~~~~~~~~~~~~~l~~Ye~~R~ 337 (388)
T PRK07608 305 RDVAALADVLAGREPFRDLGDLRLLRRYERARR 337 (388)
T ss_pred HHHHHHHHHHHHhhccCCCccHHHHHHHHHHHH
Confidence 999999999987542111 1245777876654
No 38
>PRK07588 hypothetical protein; Provisional
Probab=99.98 E-value=2.6e-30 Score=248.25 Aligned_cols=303 Identities=12% Similarity=0.117 Sum_probs=182.9
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCC-Ccccch---hHHHhhcCchhhhh-hc--cCCeEEEecCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWP-NNYGVW---VDEFEAMDLLDCLD-TT--WSGAVVHIDDNTK 82 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~-~~~g~~---~~~l~~~~~~~~~~-~~--~~~~~~~~~~~~~ 82 (426)
.||+||||||+|+++|+.|++.|++|+|+|+.+..... ..++.| ...++++|+.+.+. .. +....+....+..
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~ 80 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRR 80 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCE
Confidence 38999999999999999999999999999998754211 112222 24577888765433 22 2222222111110
Q ss_pred ----------cccCCCccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCc
Q 014377 83 ----------KDLDRPYGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRC 151 (426)
Q Consensus 83 ----------~~~~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~ 151 (426)
.....++..++|..|.+.|.+.+. .+++++ +++|++++.+++++.|++++|+++++|+||+|||.+|.
T Consensus 81 ~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~ 159 (391)
T PRK07588 81 KADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAID-GQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSH 159 (391)
T ss_pred EEEecHHHccccCCCceEEEEHHHHHHHHHHhhh-cCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCcc
Confidence 001123346899999999988664 578998 99999999988889999999999999999999999999
Q ss_pred cccccCCCCCceeeEEEEEE-EeecCCCC-CCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeEE-Eeccc-C
Q 014377 152 LVQYDKPYNPGYQVAYGILA-EVEEHPFD-LDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIF-LEETS-L 227 (426)
Q Consensus 152 ~r~~~~~~~~~~~~~~g~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~-v~~~~-~ 227 (426)
+|+.............+..+ ........ .....++.|..+ ..++..+|..++... +-... .
T Consensus 160 vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---------------g~~~~~~p~~~~~~~~~~~~~~~ 224 (391)
T PRK07588 160 VRRLVFGPERDFEHYLGCKVAACVVDGYRPRDERTYVLYNEV---------------GRQVARVALRGDRTLFLFIFRAE 224 (391)
T ss_pred chhhccCCccceEEEcCcEEEEEEcCCCCCCCCceEEEEeCC---------------CCEEEEEecCCCCeEEEEEEEcC
Confidence 99975332221122222222 11111111 111111111110 135677787666432 11111 1
Q ss_pred cCCCCCChHHHHHHHHHHHhhcCCcccccccc----c-eEeecCC-CCCCC-CCCceeEeeccCCCCCCCCcHHHHHHHH
Q 014377 228 VARPGVPMKDIQERMVARLKHLGIKVRSIEED----E-HCVIPMG-GPLPV-LPQRVVGIGGTAGMVHPSTGYMVARTLA 300 (426)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~p~~-~~~~~-~~~~v~liGdAa~~~~P~~G~G~~~a~~ 300 (426)
......+.++..+.+.+.+..+.+....+... . ....+.. ...+. ..+|++++|||||.++|+.|||+|+|++
T Consensus 225 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aie 304 (391)
T PRK07588 225 HDNPPLTPAEEKQLLRDQFGDVGWETPDILAALDDVEDLYFDVVSQIRMDRWSRGRVALVGDAAACPSLLGGEGSGLAIT 304 (391)
T ss_pred CccccCCHHHHHHHHHHHhccCCccHHHHHHhhhcccchheeeeeeeccCccccCCEEEEEccccCCCCccCCcHHHHHH
Confidence 11223345556666666665543322221110 0 0011111 11223 3589999999999999999999999999
Q ss_pred hcHHHHHHHHHhcCCCCCCchhhhHHHHHH
Q 014377 301 AAPIVANAIVRSLSSDRSISGHKLSAEVWK 330 (426)
Q Consensus 301 ~a~~la~~i~~~l~~~~~~~~~~~y~~~~~ 330 (426)
||..|++.|..... +....+..|++.++
T Consensus 305 Da~~La~~L~~~~~--~~~~al~~Y~~~R~ 332 (391)
T PRK07588 305 EAYVLAGELARAGG--DHRRAFDAYEKRLR 332 (391)
T ss_pred HHHHHHHHHHhccC--CHHHHHHHHHHHHH
Confidence 99999999975321 12245677876654
No 39
>PRK06185 hypothetical protein; Provisional
Probab=99.98 E-value=6.5e-30 Score=246.98 Aligned_cols=307 Identities=15% Similarity=0.144 Sum_probs=184.3
Q ss_pred CCCCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCC-CCcccch---hHHHhhcCchhhhhh-c---cCCeEEE
Q 014377 5 SKGLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIW-PNNYGVW---VDEFEAMDLLDCLDT-T---WSGAVVH 76 (426)
Q Consensus 5 ~~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~-~~~~g~~---~~~l~~~~~~~~~~~-~---~~~~~~~ 76 (426)
++.+++||+||||||+|+++|+.|++.|++|+|||+++.... .+....+ ...++.+|+.+.+.. . +....+.
T Consensus 2 ~~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~ 81 (407)
T PRK06185 2 AEVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFE 81 (407)
T ss_pred CccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEE
Confidence 456789999999999999999999999999999999864321 1111121 234777887654432 1 1111221
Q ss_pred ecCCCc-------cccCCCcc-ccCHHHHHHHHHHHHHh-CCcEEE-EEEEEEEEEeCCeE---EEEEcCCc-EEEcCEE
Q 014377 77 IDDNTK-------KDLDRPYG-RVNRKLLKSKMLQKCIT-NGVKFH-QAKVIKVIHEESKS---LLICNDGV-TIQAAVV 142 (426)
Q Consensus 77 ~~~~~~-------~~~~~~~~-~v~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~~~~~---~v~~~~g~-~i~a~~v 142 (426)
..+... .....+++ .+.+..+.+.|.+++.+ .|++++ +++|++++.+++.+ .+...+|+ +++||+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~v 161 (407)
T PRK06185 82 IGGRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLV 161 (407)
T ss_pred ECCeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEE
Confidence 111100 01112333 47899999999998877 589998 99999998877765 23344664 7999999
Q ss_pred EECCCCCCccccccCCCCCceee-EEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeEE
Q 014377 143 LDATGFSRCLVQYDKPYNPGYQV-AYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIF 221 (426)
Q Consensus 143 V~AdG~~s~~r~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~ 221 (426)
|+|||.+|.+|+.++.....+.. .....+..+... ......+..+ . ..+.++.+|.+ +...
T Consensus 162 I~AdG~~S~vr~~~gi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------------~----~~g~~~llP~~-~~~~ 223 (407)
T PRK06185 162 VGADGRHSRVRALAGLEVREFGAPMDVLWFRLPREP-DDPESLMGRF------------G----PGQGLIMIDRG-DYWQ 223 (407)
T ss_pred EECCCCchHHHHHcCCCccccCCCceeEEEecCCCC-CCCcccceEe------------c----CCcEEEEEcCC-CeEE
Confidence 99999999999877653322111 111222222111 1100011110 0 13667888887 5433
Q ss_pred EecccCcCC----CCCChHHHHHHHHHHHhhcCCcccccc-ccceEeecCCCCC--CCCCCceeEeeccCCCCCCCCcHH
Q 014377 222 LEETSLVAR----PGVPMKDIQERMVARLKHLGIKVRSIE-EDEHCVIPMGGPL--PVLPQRVVGIGGTAGMVHPSTGYM 294 (426)
Q Consensus 222 v~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~--~~~~~~v~liGdAa~~~~P~~G~G 294 (426)
+.-+..... ...+.+++.+.+.+..+.....+..+. ......+|+.... ....+|++++|||||.++|.+|||
T Consensus 224 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG 303 (407)
T PRK06185 224 CGYVIPKGGYAALRAAGLEAFRERVAELAPELADRVAELKSWDDVKLLDVRVDRLRRWHRPGLLCIGDAAHAMSPVGGVG 303 (407)
T ss_pred EEEEecCCCchhhhhhhHHHHHHHHHHhCccHHHHHhhcCCccccEEEEEeccccccccCCCeEEEeccccccCcccccc
Confidence 322211111 122334455555444332211112111 1223445543222 234689999999999999999999
Q ss_pred HHHHHHhcHHHHHHHHHhcCCCCC-CchhhhHHHHH
Q 014377 295 VARTLAAAPIVANAIVRSLSSDRS-ISGHKLSAEVW 329 (426)
Q Consensus 295 ~~~a~~~a~~la~~i~~~l~~~~~-~~~~~~y~~~~ 329 (426)
+|.|++|+..||+.|.+.++.++. ...++.|++.+
T Consensus 304 ~nlgl~Da~~La~~l~~~~~~~~~~~~~L~~Y~~~R 339 (407)
T PRK06185 304 INLAIQDAVAAANILAEPLRRGRVSDRDLAAVQRRR 339 (407)
T ss_pred hhHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHh
Confidence 999999999999999988765432 14567777553
No 40
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.98 E-value=2.5e-30 Score=249.53 Aligned_cols=350 Identities=17% Similarity=0.122 Sum_probs=208.5
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchh--HHHhhcC--------chhhhhhc-----cCC
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWV--DEFEAMD--------LLDCLDTT-----WSG 72 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~--~~l~~~~--------~~~~~~~~-----~~~ 72 (426)
++||||||||||||+++|+.|++.|++|+||||.+.++....+|... ..++.+. ++..+... ...
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEK 83 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCC
Confidence 46999999999999999999999999999999998776554444321 2222211 11111000 000
Q ss_pred eEEEecCCCcc--ccCCCccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCC
Q 014377 73 AVVHIDDNTKK--DLDRPYGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFS 149 (426)
Q Consensus 73 ~~~~~~~~~~~--~~~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~ 149 (426)
..+.+...... ........+.|..|++.|.+.+.+.|++++ +++|++++.+++.+.+...++.+++|++||+|||.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~ 163 (428)
T PRK10157 84 SAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVN 163 (428)
T ss_pred CceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCC
Confidence 11111100000 001111247999999999999999999999 999999988777665555677789999999999999
Q ss_pred CccccccCCC--CCceeeEEEEEEEeecCCC---------CCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCC
Q 014377 150 RCLVQYDKPY--NPGYQVAYGILAEVEEHPF---------DLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSN 218 (426)
Q Consensus 150 s~~r~~~~~~--~~~~~~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~ 218 (426)
|.+++.++.. ....+.+.++....+.+.. +.....+.....+. .+....+|+| +. .+
T Consensus 164 s~l~~~lgl~~~~~~~~~av~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~---------~g~~ggG~~~--~~-~~ 231 (428)
T PRK10157 164 SILAEKLGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPT---------DGLMGGGFLY--TN-EN 231 (428)
T ss_pred HHHHHHcCCCCCCCCcEEEEEEEEEEEcCHHHHHHhhccCCCCCeEEEEEECCC---------CCCcCceeEE--Ec-CC
Confidence 9998875432 2222334444332221110 00111111000000 0000124444 43 34
Q ss_pred eEEEecccCc---CCCCCChHHHHHHHHHHHhhcC--CccccccccceEeecCCCC--CC-CCCCceeEeeccCCCCCC-
Q 014377 219 RIFLEETSLV---ARPGVPMKDIQERMVARLKHLG--IKVRSIEEDEHCVIPMGGP--LP-VLPQRVVGIGGTAGMVHP- 289 (426)
Q Consensus 219 ~~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~--~~-~~~~~v~liGdAa~~~~P- 289 (426)
.+.++..... .....+..++.+.+.+. +... ....+..+.....+|..+. .+ ...++++++||||++++|
T Consensus 232 ~~svG~~~~~~~~~~~~~~~~~~l~~~~~~-p~v~~~~~~~~~~~~~~~~ip~~g~~~~~~~~~~g~llvGDAAg~v~p~ 310 (428)
T PRK10157 232 TLSLGLVCGLHHLHDAKKSVPQMLEDFKQH-PAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNL 310 (428)
T ss_pred eEEEEEEEehHHhcccCCCHHHHHHHHHhC-chHHHHhCCCeEHHHHhhHhhcCCcccCCceecCCeEEEeccccccccc
Confidence 4544432211 11223444555544321 1110 1112233445556675442 22 256899999999999998
Q ss_pred -CCcHHHHHHHHhcHHHHHHHHHhcCCCCC-CchhhhHHHHHHhcCCHHHHHHHHHHHhH-HHHHhCCChhHHHHHHHHh
Q 014377 290 -STGYMVARTLAAAPIVANAIVRSLSSDRS-ISGHKLSAEVWKDLWPIERRRQREFFCFG-MDILLKLDLPATRRFFDAF 366 (426)
Q Consensus 290 -~~G~G~~~a~~~a~~la~~i~~~l~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ 366 (426)
++|.|++.|+.+|..+|+++.++++.++. ...+..|++.+++.+.++.+..+.+..++ ...++..-|+...+.+.++
T Consensus 311 g~~g~Gi~~A~~SG~lAAeai~~a~~~~~~s~~~l~~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (428)
T PRK10157 311 GFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESGPLRDMRMYQKLPAFLDNPRMFSGYPELAVGVARDL 390 (428)
T ss_pred CceeeeHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHhHHHHHHHHhccHHHhcCccHHHHHHHHHHHHHHHh
Confidence 59999999999999999999999876653 24578899988877655555554444443 2233344567778888888
Q ss_pred cCCC
Q 014377 367 FDLE 370 (426)
Q Consensus 367 ~~~~ 370 (426)
|..+
T Consensus 391 ~~~~ 394 (428)
T PRK10157 391 FTID 394 (428)
T ss_pred eeeC
Confidence 8765
No 41
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.97 E-value=1.4e-29 Score=252.78 Aligned_cols=307 Identities=16% Similarity=0.150 Sum_probs=187.8
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCC-CCCcccchh---HHHhhcCchhhhhh---ccCCeEEEecC
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLI-WPNNYGVWV---DEFEAMDLLDCLDT---TWSGAVVHIDD 79 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~-~~~~~g~~~---~~l~~~~~~~~~~~---~~~~~~~~~~~ 79 (426)
+.++||+||||||+|+++|+.|++.|++|+|||+++... .++..+.+. +.|+.+|+.+.+.. .+........+
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 100 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRD 100 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCC
Confidence 457899999999999999999999999999999987542 223334443 34677887654432 12222222211
Q ss_pred CCccc--------cCC-CccccCHHHHHHHHHHHHHh-CCcEEE-EEEEEEEEEeCCeEEEEEc--CCc-EEEcCEEEEC
Q 014377 80 NTKKD--------LDR-PYGRVNRKLLKSKMLQKCIT-NGVKFH-QAKVIKVIHEESKSLLICN--DGV-TIQAAVVLDA 145 (426)
Q Consensus 80 ~~~~~--------~~~-~~~~v~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~~~~~~v~~~--~g~-~i~a~~vV~A 145 (426)
..... ... ++..+.+..+++.|.+.+.+ .+++++ +++|++++.+++++++++. ++. +++||+||+|
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgA 180 (547)
T PRK08132 101 EEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIAC 180 (547)
T ss_pred CeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEEC
Confidence 11000 001 12237899999999999987 579998 9999999988888776553 453 7999999999
Q ss_pred CCCCCccccccCCCCCceeeEEE-EEEEeec-CCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeEEEe
Q 014377 146 TGFSRCLVQYDKPYNPGYQVAYG-ILAEVEE-HPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLE 223 (426)
Q Consensus 146 dG~~s~~r~~~~~~~~~~~~~~g-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~ 223 (426)
||.+|.+|+.++....+...... +...+.. .+.+.....+.+ .... ...++++.|..++...++
T Consensus 181 DG~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~------------~~~~~~~~~~~~~~~~~~ 246 (547)
T PRK08132 181 DGARSPLREMLGLEFEGRTFEDRFLIADVKMKADFPTERWFWFD--PPFH------------PGQSVLLHRQPDNVWRID 246 (547)
T ss_pred CCCCcHHHHHcCCCCCCccccceEEEEEEEecCCCCCeeeEEEe--ccCC------------CCcEEEEEeCCCCeEEEE
Confidence 99999999988765544322111 1121211 112111111111 1000 013455556555543322
Q ss_pred cccC--c-CCCCCChHHHHHHHHHHHhhcCCccccccccceEeecCCCC-CCC-CCCceeEeeccCCCCCCCCcHHHHHH
Q 014377 224 ETSL--V-ARPGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPMGGP-LPV-LPQRVVGIGGTAGMVHPSTGYMVART 298 (426)
Q Consensus 224 ~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~-~~~~v~liGdAa~~~~P~~G~G~~~a 298 (426)
.... . .....+.+++.+.+.+.+... ... ++. ....+++... ... ..+||+|+|||||.++|++|||+|++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~-~~~--~~~~~~~~~~~a~~~~~gRV~L~GDAAH~~~P~~GqG~n~g 322 (547)
T PRK08132 247 FQLGWDADPEAEKKPENVIPRVRALLGED-VPF-ELE--WVSVYTFQCRRMDRFRHGRVLFAGDAAHQVSPFGARGANSG 322 (547)
T ss_pred EecCCCCCchhhcCHHHHHHHHHHHcCCC-CCe-eEE--EEEeeeeeeeeecccccccEEEEecccccCCCcccccccch
Confidence 1110 0 011123455555555554321 111 111 1122232222 122 46899999999999999999999999
Q ss_pred HHhcHHHHHHHHHhcCCCCCCchhhhHHHHHHh
Q 014377 299 LAAAPIVANAIVRSLSSDRSISGHKLSAEVWKD 331 (426)
Q Consensus 299 ~~~a~~la~~i~~~l~~~~~~~~~~~y~~~~~~ 331 (426)
++||..||+.|+..+++....+.++.|++.++.
T Consensus 323 i~DA~~LawkLa~vl~g~~~~~lL~~Ye~eR~p 355 (547)
T PRK08132 323 IQDADNLAWKLALVLRGRAPDSLLDSYASEREF 355 (547)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 999999999999888765444678889877654
No 42
>PRK06996 hypothetical protein; Provisional
Probab=99.97 E-value=7e-30 Score=245.34 Aligned_cols=302 Identities=17% Similarity=0.149 Sum_probs=181.9
Q ss_pred CCCcCcEEEECchHHHHHHHHHHHHCC----CcEEEEcCCCCCCC---CCcccchh---HHHhhcCchhhhhhccCCeEE
Q 014377 6 KGLVVDLAVVGGGPAGLAVAQQVSEAG----LSVCSIDPSPKLIW---PNNYGVWV---DEFEAMDLLDCLDTTWSGAVV 75 (426)
Q Consensus 6 ~~~~~dViIvGgG~aGl~~A~~La~~G----~~V~liE~~~~~~~---~~~~g~~~---~~l~~~~~~~~~~~~~~~~~~ 75 (426)
..+.+||+||||||+|+++|+.|++.| ++|+|+|+.+.... ++..+.+. ..|+.+++.+..........+
T Consensus 8 ~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~ 87 (398)
T PRK06996 8 AAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHV 87 (398)
T ss_pred cCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEE
Confidence 356789999999999999999999987 47999999764321 12222222 346777775432221111111
Q ss_pred EecCCC------ccccCCC-cc-ccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCC---cEEEcCEEE
Q 014377 76 HIDDNT------KKDLDRP-YG-RVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDG---VTIQAAVVL 143 (426)
Q Consensus 76 ~~~~~~------~~~~~~~-~~-~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g---~~i~a~~vV 143 (426)
...... ......+ .+ .++|..|++.|.+++.+.|+++. ++++++++.+++++++++.++ ++++||+||
T Consensus 88 ~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvI 167 (398)
T PRK06996 88 SQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAV 167 (398)
T ss_pred ecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEE
Confidence 100100 0111112 23 48999999999999999899998 999999998888898888755 689999999
Q ss_pred ECCCC-CCccccccCCCCCceee-EEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCe--
Q 014377 144 DATGF-SRCLVQYDKPYNPGYQV-AYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNR-- 219 (426)
Q Consensus 144 ~AdG~-~s~~r~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~-- 219 (426)
+|||. +|.+|+.++....+..+ ..++...+.. ..+.+...+..+.. .+++..+|..++.
T Consensus 168 gADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~----------------~G~~~~lp~~~~~~~ 230 (398)
T PRK06996 168 QAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTV-SAPRPGWAWERFTH----------------EGPLALLPLGGPRQA 230 (398)
T ss_pred ECCCCCchHHHHHcCCCceeeecCCeEEEEEEEc-cCCCCCEEEEEecC----------------CCCeEEeECCCCCCC
Confidence 99996 46777765443322111 2233333331 11122222222210 2446666776542
Q ss_pred -EE-Ee-cccC-c-CCCCCChHHHHHHHHHHHhhcCCccccccccceEeecCCCCC-CC-CCCceeEeeccCCCCCCCCc
Q 014377 220 -IF-LE-ETSL-V-ARPGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPMGGPL-PV-LPQRVVGIGGTAGMVHPSTG 292 (426)
Q Consensus 220 -~~-v~-~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~-~~~~v~liGdAa~~~~P~~G 292 (426)
.. +- .+.. . .....+.++..+.+.+.+......+.. ......+|+.... +. ..+|++++|||||.++|+.|
T Consensus 231 ~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~G 308 (398)
T PRK06996 231 DYALVWCCAPDEAARRAALPDDAFLAELGAAFGTRMGRFTR--IAGRHAFPLGLNAARTLVNGRIAAVGNAAQTLHPVAG 308 (398)
T ss_pred cEEEEEECCHHHHHHHHcCCHHHHHHHHHHHhccccCceEE--ecceEEEeeecccccceecCCEEEEEhhhccCCcccc
Confidence 21 11 1100 0 002234455666666555432111111 1112345554222 22 46899999999999999999
Q ss_pred HHHHHHHHhcHHHHHHHHHhcCCCCCCchhhhHHHHH
Q 014377 293 YMVARTLAAAPIVANAIVRSLSSDRSISGHKLSAEVW 329 (426)
Q Consensus 293 ~G~~~a~~~a~~la~~i~~~l~~~~~~~~~~~y~~~~ 329 (426)
||+|+|++||..||++|... +.....+..|++.+
T Consensus 309 QG~n~ai~Da~~La~~L~~~---~~~~~~L~~Y~~~R 342 (398)
T PRK06996 309 QGLNLGLRDAHTLADALSDH---GATPLALATFAARR 342 (398)
T ss_pred hhHHHHHHHHHHHHHHHHhc---CCcHHHHHHHHHHH
Confidence 99999999999999999752 22224577787654
No 43
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.97 E-value=1e-29 Score=244.83 Aligned_cols=304 Identities=17% Similarity=0.198 Sum_probs=184.2
Q ss_pred CcCcEEEECchHHHHHHHHHHHHC---CCcEEEEcCCCCCC--CC--C--cccch---hHHHhhcCchhhhhhc-cCCeE
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEA---GLSVCSIDPSPKLI--WP--N--NYGVW---VDEFEAMDLLDCLDTT-WSGAV 74 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~---G~~V~liE~~~~~~--~~--~--~~g~~---~~~l~~~~~~~~~~~~-~~~~~ 74 (426)
+.+||+||||||+|+++|+.|++. |++|+|||+..... .+ . ..+.+ ...++.+|+.+.+... .+...
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~ 81 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITH 81 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccE
Confidence 568999999999999999999998 99999999953221 11 1 11222 2347778876554322 11111
Q ss_pred EEecCC--Cc------cccCCCc--cccCHHHHHHHHHHHHHh-CCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEE
Q 014377 75 VHIDDN--TK------KDLDRPY--GRVNRKLLKSKMLQKCIT-NGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVV 142 (426)
Q Consensus 75 ~~~~~~--~~------~~~~~~~--~~v~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~v 142 (426)
+.+... .. .....+. ..++|..|.+.|.+.+.+ .|++++ +++|++++.+++++.|++.+|.++++|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~v 161 (395)
T PRK05732 82 IHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLL 161 (395)
T ss_pred EEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEE
Confidence 111110 00 0111111 247899999999998876 689998 89999998888888899988888999999
Q ss_pred EECCCCCCccccccCCCCCceee-EEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeEE
Q 014377 143 LDATGFSRCLVQYDKPYNPGYQV-AYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIF 221 (426)
Q Consensus 143 V~AdG~~s~~r~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~ 221 (426)
|+|||.+|.+++.++........ ...+...+..... .....+..+. ..+.++.+|.++++..
T Consensus 162 I~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----------------~~g~~~~~p~~~g~~~ 224 (395)
T PRK05732 162 VAADGSHSALREALGIDWQQHPYEQVAVIANVTTSEA-HQGRAFERFT----------------EHGPLALLPMSDGRCS 224 (395)
T ss_pred EEecCCChhhHHhhCCCccceecCCEEEEEEEEecCC-CCCEEEEeec----------------CCCCEEEeECCCCCeE
Confidence 99999999999876543221111 1112112221111 1111111110 0245778898887653
Q ss_pred EecccCcC----CCCCChHHHHHHHHHHHhhcCCccccccc-cceEeecCCCC--CCCCCCceeEeeccCCCCCCCCcHH
Q 014377 222 LEETSLVA----RPGVPMKDIQERMVARLKHLGIKVRSIEE-DEHCVIPMGGP--LPVLPQRVVGIGGTAGMVHPSTGYM 294 (426)
Q Consensus 222 v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~--~~~~~~~v~liGdAa~~~~P~~G~G 294 (426)
+....... ....+.+++.+.+.+.+.. ....+.. .....+|+... .+...+|++++|||||.++|++|||
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~grv~LvGDAAh~~~P~~GqG 301 (395)
T PRK05732 225 LVWCHPLEDAEEVLSWSDAQFLAELQQAFGW---RLGRITHAGKRSAYPLALVTAAQQISHRLALVGNAAQTLHPIAGQG 301 (395)
T ss_pred EEEECCHHHHHHHHcCCHHHHHHHHHHHHHh---hhcceeecCCcceecccccchhhhccCcEEEEeecccccCCccccc
Confidence 32111000 0123444455555444321 1111111 11223343221 1224689999999999999999999
Q ss_pred HHHHHHhcHHHHHHHHHhcCCCCC---CchhhhHHHHHHh
Q 014377 295 VARTLAAAPIVANAIVRSLSSDRS---ISGHKLSAEVWKD 331 (426)
Q Consensus 295 ~~~a~~~a~~la~~i~~~l~~~~~---~~~~~~y~~~~~~ 331 (426)
+|.|++||..||++|...++.... ...++.|++.++.
T Consensus 302 ~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~ 341 (395)
T PRK05732 302 FNLGLRDVMSLAETLTQALARGEDIGDYAVLQRYQQRRQQ 341 (395)
T ss_pred cchHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999877644322 1357778876553
No 44
>PRK06753 hypothetical protein; Provisional
Probab=99.97 E-value=7.8e-30 Score=243.64 Aligned_cols=295 Identities=17% Similarity=0.165 Sum_probs=175.7
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccc--h---hHHHhhcCchhhhhhc---cCCeEEEecCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGV--W---VDEFEAMDLLDCLDTT---WSGAVVHIDDNT 81 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~--~---~~~l~~~~~~~~~~~~---~~~~~~~~~~~~ 81 (426)
.||+||||||+|+++|+.|++.|++|+|+|+++.+.. ..+|. + ...|+.+|+.+.+... .....+...++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~-~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~ 79 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKE-VGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGT 79 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccc-cccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCC
Confidence 3799999999999999999999999999999986532 22222 2 2346777775543221 122222222111
Q ss_pred c-ccc----CCCccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCccccc
Q 014377 82 K-KDL----DRPYGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRCLVQY 155 (426)
Q Consensus 82 ~-~~~----~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~~r~~ 155 (426)
. ... ......++|..|.+.|.+.+. +.+++ +++|++++.+++++.|++.+|+++++|+||+|||.+|.+|+.
T Consensus 80 ~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~vR~~ 157 (373)
T PRK06753 80 LLNKVKLKSNTLNVTLHRQTLIDIIKSYVK--EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSKVRQS 157 (373)
T ss_pred EEeecccccCCccccccHHHHHHHHHHhCC--CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchHHHHH
Confidence 1 001 112235899999999998875 35677 999999998888899999999999999999999999999998
Q ss_pred cCCCCCc-eeeEEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeEEEecccCcC-----
Q 014377 156 DKPYNPG-YQVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETSLVA----- 229 (426)
Q Consensus 156 ~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~----- 229 (426)
+.+.... +.....+...+..............+ .. .++++++|..++.+.........
T Consensus 158 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------------~~----~g~~~~~p~~~~~~~~~~~~~~~~~~~~ 221 (373)
T PRK06753 158 VNADSKVRYQGYTCFRGLIDDIDLKLPDCAKEYW------------GT----KGRFGIVPLLNNQAYWFITINAKERDPK 221 (373)
T ss_pred hCCCCCceEcceEEEEEEeccccccCccceEEEE------------cC----CCEEEEEEcCCCeEEEEEEeccccCCcc
Confidence 7543211 11111221222211111111011111 00 25677888887754322211101
Q ss_pred CCCCChHHHHHHHHHHHhhcCCcccccccc----ceEeecCC--CCCCC-CCCceeEeeccCCCCCCCCcHHHHHHHHhc
Q 014377 230 RPGVPMKDIQERMVARLKHLGIKVRSIEED----EHCVIPMG--GPLPV-LPQRVVGIGGTAGMVHPSTGYMVARTLAAA 302 (426)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~p~~--~~~~~-~~~~v~liGdAa~~~~P~~G~G~~~a~~~a 302 (426)
....+.+++.+ ++..+...+.++.+. .....+.. .+.+. ..+|++++|||||.++|+.|||+|+|++||
T Consensus 222 ~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LiGDAAh~~~P~~GqG~n~ai~Da 297 (373)
T PRK06753 222 YSSFGKPHLQA----YFNHYPNEVREILDKQSETGILHHDIYDLKPLKSFVYGRIVLLGDAAHATTPNMGQGAGQAMEDA 297 (373)
T ss_pred cccccHHHHHH----HHhcCChHHHHHHHhCCcccceeeccccccccccccCCCEEEEecccccCCCCcCccHHHHHHHH
Confidence 01112233333 333222221211110 11111111 11223 358999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCchhhhHHHHHHh
Q 014377 303 PIVANAIVRSLSSDRSISGHKLSAEVWKD 331 (426)
Q Consensus 303 ~~la~~i~~~l~~~~~~~~~~~y~~~~~~ 331 (426)
..|++.|.+ .+....++.|++.++.
T Consensus 298 ~~L~~~L~~----~~~~~al~~Y~~~r~~ 322 (373)
T PRK06753 298 IVLANCLNA----YDFEKALQRYDKIRVK 322 (373)
T ss_pred HHHHHHhhh----ccHHHHHHHHHHHhhH
Confidence 999999853 1222556778876553
No 45
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.97 E-value=4.5e-29 Score=238.63 Aligned_cols=299 Identities=14% Similarity=0.196 Sum_probs=169.2
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCC-CCc-ccc-h---hHHHhhcCchhhhhh-cc--CCeEEEecC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIW-PNN-YGV-W---VDEFEAMDLLDCLDT-TW--SGAVVHIDD 79 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~-~~~-~g~-~---~~~l~~~~~~~~~~~-~~--~~~~~~~~~ 79 (426)
++||+||||||+|+++|+.|++.|++|+|||+.+.... ... .+. + ...|+.+|+.+.+.. .. ....+....
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 81 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDG 81 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCC
Confidence 47999999999999999999999999999999875311 111 111 2 245788888765432 11 122221111
Q ss_pred CCcccc-------CCCccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEE-eCCeEEEEEc-CCc--EEEcCEEEECCC
Q 014377 80 NTKKDL-------DRPYGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIH-EESKSLLICN-DGV--TIQAAVVLDATG 147 (426)
Q Consensus 80 ~~~~~~-------~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~-~~~~~~v~~~-~g~--~i~a~~vV~AdG 147 (426)
..... ..+.....+..+.+.|.+.+.+.|++++ +++++.+.. +++.+.|++. +|+ +++||+||+|||
T Consensus 82 -~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG 160 (390)
T TIGR02360 82 -QRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDG 160 (390)
T ss_pred -EEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCC
Confidence 10000 0111123577888999998888888887 888777755 4556667775 774 799999999999
Q ss_pred CCCccccccCCCCC-ceeeE--EEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCC--CC-eEE
Q 014377 148 FSRCLVQYDKPYNP-GYQVA--YGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFS--SN-RIF 221 (426)
Q Consensus 148 ~~s~~r~~~~~~~~-~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~--~~-~~~ 221 (426)
.+|.+|+++..... .+... .++..-....+.......+. ... .+|.+ .|.. +. +.+
T Consensus 161 ~~S~VR~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~--------------~~~~~-~~~~~~~~~~~~ 222 (390)
T TIGR02360 161 FHGVSRASIPAEVLKEFERVYPFGWLGILSETPPVSHELIYS---NHE--------------RGFAL-CSMRSATRSRYY 222 (390)
T ss_pred CchhhHHhcCcccceeeeccCCcceEEEecCCCCCCCceEEE---eCC--------------CceEE-EeccCCCcceEE
Confidence 99999998654321 11111 12221111111111111110 000 12222 2322 11 111
Q ss_pred EecccCcCCCCCChHHHHHHHHHHHhhcCCcccccc----ccceEeecCCCC--CCCCCCceeEeeccCCCCCCCCcHHH
Q 014377 222 LEETSLVARPGVPMKDIQERMVARLKHLGIKVRSIE----EDEHCVIPMGGP--LPVLPQRVVGIGGTAGMVHPSTGYMV 295 (426)
Q Consensus 222 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~p~~~~--~~~~~~~v~liGdAa~~~~P~~G~G~ 295 (426)
+..........+..+.+.+.+.+.+.. ...+.. .......|+... .+...+|++|+|||||.++|+.|||+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~grvvLvGDAAH~~~P~~GQG~ 299 (390)
T TIGR02360 223 VQVPLTDKVEDWSDDRFWAELKRRLPS---EAAERLVTGPSIEKSIAPLRSFVCEPMQYGRLFLAGDAAHIVPPTGAKGL 299 (390)
T ss_pred EEcCCCCChhhCChhHHHHHHHHhcCc---hhhhhhccCCccceeeeeHHhhccccCccCCEEEEEccccCCCCCcCCch
Confidence 111111111222334444444444321 111110 011233344221 12246999999999999999999999
Q ss_pred HHHHHhcHHHHHHHHHhcCCCCCCchhhhHHHHHH
Q 014377 296 ARTLAAAPIVANAIVRSLSSDRSISGHKLSAEVWK 330 (426)
Q Consensus 296 ~~a~~~a~~la~~i~~~l~~~~~~~~~~~y~~~~~ 330 (426)
|+|++||..||++|.+....+ ...++..|++.++
T Consensus 300 n~aieDA~~La~~L~~~~~~~-~~~al~~Y~~~R~ 333 (390)
T TIGR02360 300 NLAASDVHYLYEALLEHYQEG-SSAGIEGYSARAL 333 (390)
T ss_pred hHHHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 999999999999998654321 2256778887654
No 46
>PRK06847 hypothetical protein; Provisional
Probab=99.97 E-value=6.5e-29 Score=237.54 Aligned_cols=302 Identities=18% Similarity=0.215 Sum_probs=182.0
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccch-----hHHHhhcCchhhh-hhccC--CeEEEec
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVW-----VDEFEAMDLLDCL-DTTWS--GAVVHID 78 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~-----~~~l~~~~~~~~~-~~~~~--~~~~~~~ 78 (426)
....||+||||||+|+++|+.|++.|++|+|+|+.+.... ...|.. ...++.+++.+.+ ....+ ...+...
T Consensus 2 ~~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~-~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 80 (375)
T PRK06847 2 AAVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRV-YGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDP 80 (375)
T ss_pred CCcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcc-CCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECC
Confidence 3467999999999999999999999999999999875421 122221 2346677765433 22221 1222211
Q ss_pred CCCc-------cccC---CCccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCC
Q 014377 79 DNTK-------KDLD---RPYGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATG 147 (426)
Q Consensus 79 ~~~~-------~~~~---~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG 147 (426)
.+.. .... .....++|..|.+.|.+.+.+.|++++ +++|++++.+++++.+.+.+|+++.+|+||+|||
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG 160 (375)
T PRK06847 81 DGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADG 160 (375)
T ss_pred CCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcC
Confidence 1110 0000 112357899999999999988899998 8999999988888889999999999999999999
Q ss_pred CCCccccccCCC-C-CceeeEEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeEEEecc
Q 014377 148 FSRCLVQYDKPY-N-PGYQVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEET 225 (426)
Q Consensus 148 ~~s~~r~~~~~~-~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~ 225 (426)
.+|.+|+.+.+. . ..+.....+...++.++ ..+.. .+ |... .+.+..+|.+++.+++...
T Consensus 161 ~~s~~r~~l~~~~~~~~~~g~~~~~~~~~~~~-~~~~~-~~-~~~~---------------~~~~~~~p~~~~~~~~~~~ 222 (375)
T PRK06847 161 LYSKVRSLVFPDEPEPEYTGQGVWRAVLPRPA-EVDRS-LM-YLGP---------------TTKAGVVPLSEDLMYLFVT 222 (375)
T ss_pred CCcchhhHhcCCCCCceeccceEEEEEecCCC-Cccce-EE-EeCC---------------CcEEEEEcCCCCeEEEEEe
Confidence 999999876322 1 11111111111222111 11111 11 1110 1345566777665432221
Q ss_pred cCc-CCCCCChHHHHHHHHHHHhhcCC-ccccc---c--ccceEeecCCCC--CC-CCCCceeEeeccCCCCCCCCcHHH
Q 014377 226 SLV-ARPGVPMKDIQERMVARLKHLGI-KVRSI---E--EDEHCVIPMGGP--LP-VLPQRVVGIGGTAGMVHPSTGYMV 295 (426)
Q Consensus 226 ~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~--~~~~~~~p~~~~--~~-~~~~~v~liGdAa~~~~P~~G~G~ 295 (426)
... .....+.+...+.+.+.+..+.. ....+ . .......|+... .+ ...+|++|+|||||.++|++|||+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAaH~~~P~~GqG~ 302 (375)
T PRK06847 223 EPRPDNPRIEPDTLAALLRELLAPFGGPVLQELREQITDDAQVVYRPLETLLVPAPWHRGRVVLIGDAAHATTPHLAQGA 302 (375)
T ss_pred ccCcccccCChHHHHHHHHHHHhhcCchHHHHHHHhcCCccceeeccHhhccCCCCccCCeEEEEechhccCCCCccccH
Confidence 111 11122344455555555554432 11111 1 111223343221 12 246899999999999999999999
Q ss_pred HHHHHhcHHHHHHHHHhcCCCCCCchhhhHHHHHH
Q 014377 296 ARTLAAAPIVANAIVRSLSSDRSISGHKLSAEVWK 330 (426)
Q Consensus 296 ~~a~~~a~~la~~i~~~l~~~~~~~~~~~y~~~~~ 330 (426)
|.|++||..|++.|.+. .+..+.++.|++.++
T Consensus 303 n~aieDA~~La~~L~~~---~~~~~al~~Y~~~R~ 334 (375)
T PRK06847 303 GMAIEDAIVLAEELARH---DSLEAALQAYYARRW 334 (375)
T ss_pred HHHHHHHHHHHHHHhhC---CcHHHHHHHHHHHHH
Confidence 99999999999999752 112245677876543
No 47
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.97 E-value=8.5e-30 Score=245.37 Aligned_cols=300 Identities=15% Similarity=0.199 Sum_probs=179.2
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccc--h---hHHHhhcCchhhhhh-cc--CCeEEEec
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGV--W---VDEFEAMDLLDCLDT-TW--SGAVVHID 78 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~--~---~~~l~~~~~~~~~~~-~~--~~~~~~~~ 78 (426)
.++.||+||||||+|+++|+.|++.|++|+|+||.+.+.. ...+. + ...|+.+|+.+.+.. .. ....+...
T Consensus 2 ~~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~-~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~ 80 (396)
T PRK08163 2 TKVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGE-IGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDA 80 (396)
T ss_pred CCCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccccc-ccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeC
Confidence 3568999999999999999999999999999999876432 12222 2 234777887654432 11 11111111
Q ss_pred -CCCc-----------cccCCCccccCHHHHHHHHHHHHHhC-CcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEE
Q 014377 79 -DNTK-----------KDLDRPYGRVNRKLLKSKMLQKCITN-GVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLD 144 (426)
Q Consensus 79 -~~~~-----------~~~~~~~~~v~r~~l~~~L~~~~~~~-gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~ 144 (426)
.... .....++..++|..|.+.|.+.+.+. +++++ +++|++++.+++++.+++.+|+++.||+||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~ 160 (396)
T PRK08163 81 VDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIG 160 (396)
T ss_pred CCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEE
Confidence 0100 11223445689999999999999875 58888 8999999988888889999998999999999
Q ss_pred CCCCCCccccccCCC---CCceeeEEEEEEEeecCCCCC-CceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeE
Q 014377 145 ATGFSRCLVQYDKPY---NPGYQVAYGILAEVEEHPFDL-DKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRI 220 (426)
Q Consensus 145 AdG~~s~~r~~~~~~---~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~ 220 (426)
|||.+|.+|+..... ..++. .+...+.....+... .....+ + .+ ..++++.+|..++..
T Consensus 161 AdG~~S~~r~~~~g~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~-~------------~g---~~~~~~~~p~~~g~~ 223 (396)
T PRK08163 161 CDGVKSVVRQSLVGDAPRVTGHV-VYRAVIDVDDMPEDLRINAPVL-W------------AG---PHCHLVHYPLRGGEQ 223 (396)
T ss_pred CCCcChHHHhhccCCCCCccccE-EEEEEEeHHHCcchhccCccEE-E------------Ec---CCceEEEEEecCCeE
Confidence 999999999876321 22222 222222211110000 000000 0 00 024567778766542
Q ss_pred -EEeccc--Cc-C---CCCCChHHHHHHHHHHHhhcCCcccccccc--ceEeecCC--CCCCCC-CCceeEeeccCCCCC
Q 014377 221 -FLEETS--LV-A---RPGVPMKDIQERMVARLKHLGIKVRSIEED--EHCVIPMG--GPLPVL-PQRVVGIGGTAGMVH 288 (426)
Q Consensus 221 -~v~~~~--~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~--~~~~~~-~~~v~liGdAa~~~~ 288 (426)
.+..+. .. . ....+.+++.+. +..+.....+++.. ....+++. .+.+.| .+|++|+|||||.++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~ 299 (396)
T PRK08163 224 YNLVVTFHSREQEEWGVKDGSKEEVLSY----FEGIHPRPRQMLDKPTSWKRWATADREPVAKWSTGRVTLLGDAAHPMT 299 (396)
T ss_pred EEEEEEECCCCCcccccCCCCHHHHHHH----HcCCChHHHHHHhcCCceeEccccCCCcccccccCcEEEEecccccCC
Confidence 111110 00 0 011123334333 33322222222111 11111111 122333 589999999999999
Q ss_pred CCCcHHHHHHHHhcHHHHHHHHHhcCCCCCCchhhhHHHHHH
Q 014377 289 PSTGYMVARTLAAAPIVANAIVRSLSSDRSISGHKLSAEVWK 330 (426)
Q Consensus 289 P~~G~G~~~a~~~a~~la~~i~~~l~~~~~~~~~~~y~~~~~ 330 (426)
|+.|||+|+|++||..|+++|... ..+....+..|++.++
T Consensus 300 P~~GqG~n~ai~Da~~La~~L~~~--~~~~~~al~~y~~~R~ 339 (396)
T PRK08163 300 QYMAQGACMALEDAVTLGKALEGC--DGDAEAAFALYESVRI 339 (396)
T ss_pred cchhccHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 999999999999999999999752 1122246778886654
No 48
>PRK05868 hypothetical protein; Validated
Probab=99.97 E-value=2.9e-29 Score=238.23 Aligned_cols=302 Identities=16% Similarity=0.115 Sum_probs=177.2
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCC-Ccc---cchhHHHhhcCchhhhhh---ccCCeEEEecCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWP-NNY---GVWVDEFEAMDLLDCLDT---TWSGAVVHIDDNTK 82 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~-~~~---g~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~ 82 (426)
.||+||||||+|+++|+.|++.|++|+|||+++.+... ... +.....++.+|+.+.+.. ......+...++..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE 81 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence 48999999999999999999999999999998764321 111 112345788887654432 12222222221110
Q ss_pred c-----------ccCCCccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCC
Q 014377 83 K-----------DLDRPYGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSR 150 (426)
Q Consensus 83 ~-----------~~~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s 150 (426)
. ....+...+.|..|.+.|.+.+ ..|++++ +++|++++.++++++|+++||++++||+||+|||.+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~-~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S 160 (372)
T PRK05868 82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGAT-QPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHS 160 (372)
T ss_pred EeecccccccCCCCCCceEEEEHHHHHHHHHHhc-cCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCc
Confidence 0 0111122467899998876543 4689998 9999999988888999999999999999999999999
Q ss_pred ccccccCCCCCceee---EEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCC-eEE--Eec
Q 014377 151 CLVQYDKPYNPGYQV---AYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSN-RIF--LEE 224 (426)
Q Consensus 151 ~~r~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~-~~~--v~~ 224 (426)
.+|+.+......... .+...+.++. ....+....+ +... ..++.+.|..++ ..+ +..
T Consensus 161 ~vR~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~-~~g~---------------~~~~~~~~~~~~~~~~~~~~~ 223 (372)
T PRK05868 161 NVRRLVFGPEEQFVKRLGTHAAIFTVPN-FLELDYWQTW-HYGD---------------STMAGVYSARNNTEARAALAF 223 (372)
T ss_pred hHHHHhcCCcccceeecceEEEEEEcCC-CCCCCcceEE-EecC---------------CcEEEEEecCCCCceEEEEEE
Confidence 999986432211111 1222222221 1111111110 0000 123344455433 211 111
Q ss_pred ccCcCC-CCCChHHHHHHHHHHHhhcCCcccccc---c-cceEeec-CC-CCCCC-CCCceeEeeccCCCCCCCCcHHHH
Q 014377 225 TSLVAR-PGVPMKDIQERMVARLKHLGIKVRSIE---E-DEHCVIP-MG-GPLPV-LPQRVVGIGGTAGMVHPSTGYMVA 296 (426)
Q Consensus 225 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~p-~~-~~~~~-~~~~v~liGdAa~~~~P~~G~G~~ 296 (426)
.....+ .....+...+.+.+.+...++...++. . .....++ +. ...+. +.+||+|+|||||.++|+.|||+|
T Consensus 224 ~~~~~~~~~~~~~~~~~~l~~~f~~~~w~~~~l~~~~~~~~~~~~~~~~~~~~~~w~~grv~LvGDAAH~~~P~~GqGa~ 303 (372)
T PRK05868 224 MDTELRIDYRDTEAQFAELQRRMAEDGWVRAQLLHYMRSAPDFYFDEMSQILMDRWSRGRVALVGDAGYCCSPLSGQGTS 303 (372)
T ss_pred ecCCcccccCChHHHHHHHHHHHhhCCCchHHHHhhcccCCceeeccceEEecCCCCCCCeeeeecccccCCCccCccHH
Confidence 100000 111223344555555554334322221 1 1111222 21 12234 358999999999999999999999
Q ss_pred HHHHhcHHHHHHHHHhcCCCCCCchhhhHHHHHHh
Q 014377 297 RTLAAAPIVANAIVRSLSSDRSISGHKLSAEVWKD 331 (426)
Q Consensus 297 ~a~~~a~~la~~i~~~l~~~~~~~~~~~y~~~~~~ 331 (426)
+|++||..||++|.+. ..+...+++.|++.++.
T Consensus 304 ~AleDa~~La~~L~~~--~~~~~~al~~ye~~~~~ 336 (372)
T PRK05868 304 VALLGAYILAGELKAA--GDDYQLGFANYHAEFHG 336 (372)
T ss_pred HHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHhH
Confidence 9999999999999753 11223567888877553
No 49
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.97 E-value=2.3e-29 Score=242.07 Aligned_cols=303 Identities=19% Similarity=0.213 Sum_probs=177.3
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCC-CCcccch---hHHHhhcCchhhhhh-ccCCeEEEecCCCc--
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIW-PNNYGVW---VDEFEAMDLLDCLDT-TWSGAVVHIDDNTK-- 82 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~-~~~~g~~---~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~-- 82 (426)
-+|+||||||+|+++|+.|+++|++|+|+|+.+.... ....+.+ ...|+.+|+.+.+.. ......+.+.+...
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 5799999999999999999999999999999875421 1111122 234777887654432 11111122111100
Q ss_pred ------------cccCCCccccCHHHHHHHHHHHHHh-CCcEEE-EEEEEEEEEeCCeEEEEE---cCCcEEEcCEEEEC
Q 014377 83 ------------KDLDRPYGRVNRKLLKSKMLQKCIT-NGVKFH-QAKVIKVIHEESKSLLIC---NDGVTIQAAVVLDA 145 (426)
Q Consensus 83 ------------~~~~~~~~~v~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~~~~~~v~~---~~g~~i~a~~vV~A 145 (426)
.....+|..++|..|.+.|.+.+.+ .+++++ +++|++++.+++++.+++ .++++++||+||+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgA 162 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIAC 162 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEEC
Confidence 0112345468999999999999876 589988 999999998877777766 33467999999999
Q ss_pred CCCCCccccccCCCCCcee--eEEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeEE--
Q 014377 146 TGFSRCLVQYDKPYNPGYQ--VAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIF-- 221 (426)
Q Consensus 146 dG~~s~~r~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~-- 221 (426)
||.+|.+|+.++.....+. ..++..+..+..+..... .+ .+.+....+.+. .+.+..+|.+++..+
T Consensus 163 DG~~S~vR~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~g~----~~~~~~~p~~~~~~~~~ 232 (400)
T PRK06475 163 DGVWSMLRAKAGFSKARFSGHIAWRTTLAADALPASFLS-AM-----PEHKAVSAWLGN----KAHFIAYPVKGGKFFNF 232 (400)
T ss_pred CCccHhHHhhcCCCCCCcCCceEEEEEeehhhcchhhhh-hc-----ccCCceEEEEcC----CCEEEEEEccCCcEEEE
Confidence 9999999998744222221 122222222111100000 00 000000001011 245666787766432
Q ss_pred Eecc-----cCcCCCCCChHHHHHHHHHHHhhcCCccccccc--cceEeecCCCCC--CCC-CCceeEeeccCCCCCCCC
Q 014377 222 LEET-----SLVARPGVPMKDIQERMVARLKHLGIKVRSIEE--DEHCVIPMGGPL--PVL-PQRVVGIGGTAGMVHPST 291 (426)
Q Consensus 222 v~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~p~~~~~--~~~-~~~v~liGdAa~~~~P~~ 291 (426)
+... ........+.+.+ .+.+..+...+..+++ .....+|+.... +.+ .+|++|+|||||.++|++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~grvvLiGDAAH~~~P~~ 308 (400)
T PRK06475 233 VAITGGENPGEVWSKTGDKAHL----KSIYADWNKPVLQILAAIDEWTYWPLFEMADAQFVGPDRTIFLGDASHAVTPFA 308 (400)
T ss_pred EEEEcCCCCcccCCCCCCHHHH----HHHhcCCChHHHHHHhcCCceeECcCcccCCCcceecCCEEEEecccccCCchh
Confidence 1101 0001111123333 3333333222222111 122344543222 223 489999999999999999
Q ss_pred cHHHHHHHHhcHHHHHHHHHhcCCCCCCchhhhHHHHHH
Q 014377 292 GYMVARTLAAAPIVANAIVRSLSSDRSISGHKLSAEVWK 330 (426)
Q Consensus 292 G~G~~~a~~~a~~la~~i~~~l~~~~~~~~~~~y~~~~~ 330 (426)
|||+|+|++||..|+++|.. .+....++.|++.++
T Consensus 309 GqG~n~aieDa~~La~~L~~----~~~~~aL~~Ye~~R~ 343 (400)
T PRK06475 309 AQGAAMAIEDAAALAEALDS----DDQSAGLKRFDSVRK 343 (400)
T ss_pred hhhHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHH
Confidence 99999999999999999963 122256788887654
No 50
>PRK06126 hypothetical protein; Provisional
Probab=99.97 E-value=5e-29 Score=248.94 Aligned_cols=308 Identities=14% Similarity=0.131 Sum_probs=182.4
Q ss_pred CCCCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCC-CCCcccch---hHHHhhcCchhhhhhc-cC--------
Q 014377 5 SKGLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLI-WPNNYGVW---VDEFEAMDLLDCLDTT-WS-------- 71 (426)
Q Consensus 5 ~~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~-~~~~~g~~---~~~l~~~~~~~~~~~~-~~-------- 71 (426)
+++.++||+||||||+|+++|+.|+++|++|+|||+++.+. .++..+.. .+.|+.+|+.+.+... .+
T Consensus 3 ~~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~ 82 (545)
T PRK06126 3 ENTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIA 82 (545)
T ss_pred CCCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCce
Confidence 44567999999999999999999999999999999987542 22222222 2346777876543221 10
Q ss_pred ------CeEE---EecCCCcc-cc--------CCC--ccccCHHHHHHHHHHHHHh-CCcEEE-EEEEEEEEEeCCeEEE
Q 014377 72 ------GAVV---HIDDNTKK-DL--------DRP--YGRVNRKLLKSKMLQKCIT-NGVKFH-QAKVIKVIHEESKSLL 129 (426)
Q Consensus 72 ------~~~~---~~~~~~~~-~~--------~~~--~~~v~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~~~~~~v 129 (426)
+..+ ........ .. ..+ ...+++..|++.|.+.+.+ .|++++ +++|++++.+++++++
T Consensus 83 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v 162 (545)
T PRK06126 83 YFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTA 162 (545)
T ss_pred EEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEE
Confidence 1011 00000000 00 011 2247899999999999986 689999 9999999988887776
Q ss_pred EEc---CC--cEEEcCEEEECCCCCCccccccCCCCCce---eeEEEEEEEeecC-C-CCCCceeeeecCCCcCCCchhh
Q 014377 130 ICN---DG--VTIQAAVVLDATGFSRCLVQYDKPYNPGY---QVAYGILAEVEEH-P-FDLDKMVFMDWRDSHLNNNSEL 199 (426)
Q Consensus 130 ~~~---~g--~~i~a~~vV~AdG~~s~~r~~~~~~~~~~---~~~~g~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~ 199 (426)
++. +| .++++|+||+|||.+|.+|+.++....+. +......+..+.. . ..........+..+
T Consensus 163 ~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p-------- 234 (545)
T PRK06126 163 TVEDLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSIYIRAPGLAALVGHDPAWMYWLFNP-------- 234 (545)
T ss_pred EEEECCCCcEEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEEEEEEEcCchHHHhcCCCceEEEEECC--------
Confidence 653 35 37899999999999999999887654332 2222332222110 0 00111010000000
Q ss_pred hccCCCCCcEEEEeeCCCCeEE-Ee-cccCcCCCCCChHHHHHHHHHHHhhcCCccccccccceEeecCCCC-CCC-CCC
Q 014377 200 KEANSKIPTFLYAMPFSSNRIF-LE-ETSLVARPGVPMKDIQERMVARLKHLGIKVRSIEEDEHCVIPMGGP-LPV-LPQ 275 (426)
Q Consensus 200 ~~~~~~~~~~~~~~P~~~~~~~-v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~-~~~ 275 (426)
..+..+.|...+..| +. ..........+.+++.+.+.+.+.. ... .++.. ...++.... .+. ..+
T Consensus 235 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~i~~--~~~w~~~~~~a~~~~~g 303 (545)
T PRK06126 235 -------DRRGVLVAIDGRDEWLFHQLRGGEDEFTIDDVDARAFVRRGVGE-DID-YEVLS--VVPWTGRRLVADSYRRG 303 (545)
T ss_pred -------CccEEEEEECCCCeEEEEEecCCCCCCCCCHHHHHHHHHHhcCC-CCC-eEEEe--ecccchhheehhhhccC
Confidence 012223333333222 21 1111111223455566666555431 111 11111 111222111 122 368
Q ss_pred ceeEeeccCCCCCCCCcHHHHHHHHhcHHHHHHHHHhcCCCCCCchhhhHHHHHHh
Q 014377 276 RVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVRSLSSDRSISGHKLSAEVWKD 331 (426)
Q Consensus 276 ~v~liGdAa~~~~P~~G~G~~~a~~~a~~la~~i~~~l~~~~~~~~~~~y~~~~~~ 331 (426)
||+|+|||||.++|+.|||+|++++||..||+.|+..+++......++.|++.++.
T Consensus 304 Rv~L~GDAAH~~~P~~GqG~N~gieDa~~La~~La~~~~~~~~~~lL~~Y~~eR~p 359 (545)
T PRK06126 304 RVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNGWAGPALLDSYEAERRP 359 (545)
T ss_pred CEEEechhhccCCCCcCcccchhHHHHHHHHHHHHHHHcCCCcHHHHhhhHHHhhH
Confidence 99999999999999999999999999999999999877654444678889877654
No 51
>PTZ00367 squalene epoxidase; Provisional
Probab=99.97 E-value=4.4e-29 Score=245.36 Aligned_cols=286 Identities=15% Similarity=0.139 Sum_probs=168.4
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccch-----hHHHhhcCchhhhhhc---cCCeEEEecC
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVW-----VDEFEAMDLLDCLDTT---WSGAVVHIDD 79 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~-----~~~l~~~~~~~~~~~~---~~~~~~~~~~ 79 (426)
.++||+||||||+|+++|+.|++.|++|+|+|+++.....+..|.. ...|+++|+.+.+... ..+..+...+
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L~~LGL~d~l~~i~~~~~~~~v~~~~ 111 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIVGELLQPGGVNALKELGMEECAEGIGMPCFGYVVFDHK 111 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchhhhhhcCHHHHHHHHHCCChhhHhhcCcceeeeEEEECC
Confidence 5789999999999999999999999999999998621112233332 2357888987655422 2233333222
Q ss_pred CCccccCC----CccccCHHHHHHHHHHHH---HhCCcEEEEEEEEEEEEeCC-------eEEEEEcC------------
Q 014377 80 NTKKDLDR----PYGRVNRKLLKSKMLQKC---ITNGVKFHQAKVIKVIHEES-------KSLLICND------------ 133 (426)
Q Consensus 80 ~~~~~~~~----~~~~v~r~~l~~~L~~~~---~~~gv~~~~~~v~~i~~~~~-------~~~v~~~~------------ 133 (426)
+....... ....+++..|.+.|.+.+ ...+++++.++|+++..++. ++.+...+
T Consensus 112 G~~~~i~~~~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~~~v~~l~~~~~~~~~~v~gV~~~~~~~~~~~~~~f~~~ 191 (567)
T PTZ00367 112 GKQVKLPYGAGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLEGTVNSLLEEGPGFSERAYGVEYTEAEKYDVPENPFRED 191 (567)
T ss_pred CCEEEecCCCCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEEeEEEEeccccCccCCeeEEEEEecCCcccccccccccc
Confidence 21111111 111357889999998887 34789888668888865432 24444444
Q ss_pred -----------CcEEEcCEEEECCCCCCccccccCCC---CCceeeEEEEEEEeecCCCCCCceeeeecCCCcCCCchhh
Q 014377 134 -----------GVTIQAAVVLDATGFSRCLVQYDKPY---NPGYQVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSEL 199 (426)
Q Consensus 134 -----------g~~i~a~~vV~AdG~~s~~r~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (426)
+++++||+||+|||.+|.+|+.+... ....+.+.|..+.....+.+....++.
T Consensus 192 ~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~~g~~~~~~~lp~~~~~~v~~------------- 258 (567)
T PTZ00367 192 PPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFVGLVLKNVRLPKEQHGTVFL------------- 258 (567)
T ss_pred cccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcceEEEEEEEecccCCCCCeeEEEE-------------
Confidence 56899999999999999999987542 223355566544321111111111110
Q ss_pred hccCCCCCcEEEEeeCCCCeEEEecccCcCCCCCChHHHHHHHHHHHhh-cCCccc----cccc--cceEeecCCCC--C
Q 014377 200 KEANSKIPTFLYAMPFSSNRIFLEETSLVARPGVPMKDIQERMVARLKH-LGIKVR----SIEE--DEHCVIPMGGP--L 270 (426)
Q Consensus 200 ~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~--~~~~~~p~~~~--~ 270 (426)
. ..+.++.+|.+++.+.+......... .+.++..+.+.+.... +...+. +... ......|.... .
T Consensus 259 -g----~~gpi~~yPl~~~~~r~lv~~~~~~~-p~~~~~~~~l~~~~~p~l~~~l~~~f~~~l~~~~~l~~~p~~~~p~~ 332 (567)
T PTZ00367 259 -G----KTGPILSYRLDDNELRVLVDYNKPTL-PSLEEQSEWLIEDVAPHLPENMRESFIRASKDTKRIRSMPNARYPPA 332 (567)
T ss_pred -c----CCceEEEEEcCCCeEEEEEEecCCcC-CChHHHHHHHHHhhcccCcHHHHHHHHHhhcccCCeEEeeHhhCCCc
Confidence 0 13668889998886532222111110 1111222222221110 000000 0000 11222333221 1
Q ss_pred CCCCCceeEeeccCCCCCCCCcHHHHHHHHhcHHHHHHHHHh
Q 014377 271 PVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVRS 312 (426)
Q Consensus 271 ~~~~~~v~liGdAa~~~~P~~G~G~~~a~~~a~~la~~i~~~ 312 (426)
+.+.+|++++|||||.++|++|||+|.|++||..|++.|...
T Consensus 333 ~~~~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~ 374 (567)
T PTZ00367 333 FPSIKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGI 374 (567)
T ss_pred cCCCCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhh
Confidence 224689999999999999999999999999999999999753
No 52
>PRK07538 hypothetical protein; Provisional
Probab=99.97 E-value=8.3e-29 Score=239.19 Aligned_cols=300 Identities=19% Similarity=0.261 Sum_probs=171.4
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccc-----hhHHHhhcCchhhhhhc-c--CCeEEEecCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGV-----WVDEFEAMDLLDCLDTT-W--SGAVVHIDDNT 81 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~-----~~~~l~~~~~~~~~~~~-~--~~~~~~~~~~~ 81 (426)
.||+||||||+|+++|+.|++.|++|+|+|+++... +...|. ....|+.+|+.+.+... . ....++...+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~-~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~ 79 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELR-PLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQ 79 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCccc-ccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCC
Confidence 489999999999999999999999999999987643 222332 23346788876544321 1 12222211111
Q ss_pred c---------cccCCCccccCHHHHHHHHHHHHHh-CC-cEEE-EEEEEEEEEeCCeEEEEEcCC-----cEEEcCEEEE
Q 014377 82 K---------KDLDRPYGRVNRKLLKSKMLQKCIT-NG-VKFH-QAKVIKVIHEESKSLLICNDG-----VTIQAAVVLD 144 (426)
Q Consensus 82 ~---------~~~~~~~~~v~r~~l~~~L~~~~~~-~g-v~~~-~~~v~~i~~~~~~~~v~~~~g-----~~i~a~~vV~ 144 (426)
. .....+...++|..|++.|.+.+.+ .| .+++ +++|++++.+++++.+.+.++ ++++||+||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIg 159 (413)
T PRK07538 80 RIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIG 159 (413)
T ss_pred EEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEE
Confidence 0 0011122248999999999999876 46 4577 999999998777666665443 4899999999
Q ss_pred CCCCCCccccccCCCCC--ceeeEEEEEEEeecCCCCCCc-eeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCC---
Q 014377 145 ATGFSRCLVQYDKPYNP--GYQVAYGILAEVEEHPFDLDK-MVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSN--- 218 (426)
Q Consensus 145 AdG~~s~~r~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~--- 218 (426)
|||.+|.+|+.+.+... .+.....+....+..+..... ..++... .+.++.+|..++
T Consensus 160 ADG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~-----------------~~~~~~~p~~~~~~~ 222 (413)
T PRK07538 160 ADGIHSAVRAQLYPDEGPPRWNGVMMWRGVTEAPPFLTGRSMVMAGHL-----------------DGKLVVYPISEPVDA 222 (413)
T ss_pred CCCCCHHHhhhhcCCCCCCcccceEEEEEeecCccccCCCcEEEEcCC-----------------CCEEEEEECCCCccc
Confidence 99999999998754321 111111111111211111111 1111000 012333333321
Q ss_pred ----e-EEEecccCc-----CCCCCChHHHHHHHHHHHhhcCCc---cccccc--cceEeecCCC--CCCCC-CCceeEe
Q 014377 219 ----R-IFLEETSLV-----ARPGVPMKDIQERMVARLKHLGIK---VRSIEE--DEHCVIPMGG--PLPVL-PQRVVGI 280 (426)
Q Consensus 219 ----~-~~v~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~p~~~--~~~~~-~~~v~li 280 (426)
. .|+-..... ....+......+.+.+.+..+... +.+++. .....+|+.. +.+.| .+|++|+
T Consensus 223 ~g~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~w~~grv~Lv 302 (413)
T PRK07538 223 DGRQLINWVAEVRVDDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDVPALIRAAEAIYEYPMVDRDPLPRWTRGRVTLL 302 (413)
T ss_pred CCceEEEEEEEEcCCccCCCcccccCCccCHHHHHHHhcCCCCCcccHHHHHhcCcceeeccccccCCCCcccCCcEEEE
Confidence 1 111111000 001111112223333333332211 112211 1233345542 23344 5899999
Q ss_pred eccCCCCCCCCcHHHHHHHHhcHHHHHHHHHhcCCCCCCchhhhHHHHHH
Q 014377 281 GGTAGMVHPSTGYMVARTLAAAPIVANAIVRSLSSDRSISGHKLSAEVWK 330 (426)
Q Consensus 281 GdAa~~~~P~~G~G~~~a~~~a~~la~~i~~~l~~~~~~~~~~~y~~~~~ 330 (426)
|||||.++|++|||+|+|++||..||++|.+. .+....++.|++.++
T Consensus 303 GDAAH~~~P~~GqG~~~Ai~Da~~La~~L~~~---~~~~~aL~~Ye~~R~ 349 (413)
T PRK07538 303 GDAAHPMYPVGSNGASQAILDARALADALAAH---GDPEAALAAYEAERR 349 (413)
T ss_pred eeccCcCCCCCcccHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHhh
Confidence 99999999999999999999999999999863 222356788887654
No 53
>PLN02985 squalene monooxygenase
Probab=99.97 E-value=1.6e-28 Score=240.41 Aligned_cols=320 Identities=18% Similarity=0.174 Sum_probs=180.2
Q ss_pred CCCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchh-----HHHhhcCchhhhhh----ccCCeEEE
Q 014377 6 KGLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWV-----DEFEAMDLLDCLDT----TWSGAVVH 76 (426)
Q Consensus 6 ~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~-----~~l~~~~~~~~~~~----~~~~~~~~ 76 (426)
....+||+||||||+|+++|+.|++.|++|+|+||.+... .+.+|.+. ..|+++|+.+.+.. .+.+..+.
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~-~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~ 118 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREP-ERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVY 118 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCC-ccccccccCchHHHHHHHcCCcchhhhccCcccccEEEE
Confidence 4567899999999999999999999999999999976421 22344433 34788888765532 22222222
Q ss_pred ecCCCcccc-------CCC---c-cccCHHHHHHHHHHHHHh-CCcEEEEEEEEEEEEeCCe---EEEEEcCCc--EEEc
Q 014377 77 IDDNTKKDL-------DRP---Y-GRVNRKLLKSKMLQKCIT-NGVKFHQAKVIKVIHEESK---SLLICNDGV--TIQA 139 (426)
Q Consensus 77 ~~~~~~~~~-------~~~---~-~~v~r~~l~~~L~~~~~~-~gv~~~~~~v~~i~~~~~~---~~v~~~~g~--~i~a 139 (426)
. ++..... ..+ . ..++|..|.+.|.+++.+ .|+++..++++++..+++. +++...+|+ +++|
T Consensus 119 ~-~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~gtvv~li~~~~~v~gV~~~~~dG~~~~~~A 197 (514)
T PLN02985 119 K-DGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEGTVKSLIEEKGVIKGVTYKNSAGEETTALA 197 (514)
T ss_pred E-CCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEeeeEEEEEEcCCEEEEEEEEcCCCCEEEEEC
Confidence 2 1111000 011 1 247899999999999987 5788886677777665553 333344664 4679
Q ss_pred CEEEECCCCCCccccccCCCCC-ceeeEEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCC
Q 014377 140 AVVLDATGFSRCLVQYDKPYNP-GYQVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSN 218 (426)
Q Consensus 140 ~~vV~AdG~~s~~r~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~ 218 (426)
|+||+|||.+|.+|+.+..... .+....++.......+. ++... +.+ . .++.+.+.|.+++
T Consensus 198 dLVVgADG~~S~vR~~l~~~~~~~~s~~~~~~~~~~~~~~-~~~~~-~~~------------~----~~~~~l~ypi~~~ 259 (514)
T PLN02985 198 PLTVVCDGCYSNLRRSLNDNNAEVLSYQVGYISKNCRLEE-PEKLH-LIM------------S----KPSFTMLYQISST 259 (514)
T ss_pred CEEEECCCCchHHHHHhccCCCcceeEeEEEEEccccCCC-CCcce-EEc------------C----CCceEEEEEeCCC
Confidence 9999999999999998754332 22333444322111111 11110 000 0 0244556677666
Q ss_pred eEEEecccCc-CCCCCChHHHHHHHHHHH-hhcCCccccc-----cc-cceEeecCCCCC-C-CCCCceeEeeccCCCCC
Q 014377 219 RIFLEETSLV-ARPGVPMKDIQERMVARL-KHLGIKVRSI-----EE-DEHCVIPMGGPL-P-VLPQRVVGIGGTAGMVH 288 (426)
Q Consensus 219 ~~~v~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~-~~~~~~p~~~~~-~-~~~~~v~liGdAa~~~~ 288 (426)
++.+...... ..+.....++.+.+.+.. +.......+. .. ......|..... . ...+|++++|||+|+++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~~~~~~~p~~~l~~~~~~~~~vvLiGDAaH~~~ 339 (514)
T PLN02985 260 DVRCVFEVLPDNIPSIANGEMSTFVKNTIAPQVPPKLRKIFLKGIDEGAHIKVVPTKRMSATLSDKKGVIVLGDAFNMRH 339 (514)
T ss_pred eEEEEEEEeCCCCCCcChhhHHHHHHhccccccCHHHHHHHHhhcccccceeecCcccccccccCCCCEEEEecccccCC
Confidence 5433222111 112222233333332211 1100000000 00 012222321111 1 13478999999999999
Q ss_pred CCCcHHHHHHHHhcHHHHHHHHHhcC--CC-CCCchhhhHHHHHHhcCCHHHHHHHHHHH
Q 014377 289 PSTGYMVARTLAAAPIVANAIVRSLS--SD-RSISGHKLSAEVWKDLWPIERRRQREFFC 345 (426)
Q Consensus 289 P~~G~G~~~a~~~a~~la~~i~~~l~--~~-~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 345 (426)
|++|||++.|++||..|++.|.+.-. +. +....++.|++.++..-..-...++.+++
T Consensus 340 P~~GQGmn~AleDA~vLa~lL~~~~~~~~~~~~~~aL~~y~~~Rk~r~~~i~~la~al~~ 399 (514)
T PLN02985 340 PAIASGMMVLLSDILILRRLLQPLSNLGNANKVSEVIKSFYDIRKPMSATVNTLGNAFSQ 399 (514)
T ss_pred CCccccHhHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 99999999999999999999976311 11 11245677877655443333334444444
No 54
>PRK07236 hypothetical protein; Provisional
Probab=99.97 E-value=2e-28 Score=234.54 Aligned_cols=320 Identities=17% Similarity=0.138 Sum_probs=171.3
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccc--h---hHHHhhcCchhhhhhccC--CeEEEecC
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGV--W---VDEFEAMDLLDCLDTTWS--GAVVHIDD 79 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~--~---~~~l~~~~~~~~~~~~~~--~~~~~~~~ 79 (426)
++..||+||||||+|+++|+.|++.|++|+|+|+.+........|. + ...|+.+|+.+......+ ...+....
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~ 83 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRD 83 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCC
Confidence 3458999999999999999999999999999999875322222222 2 234677777654322222 11222111
Q ss_pred CCc-cccCCCccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCccccccC
Q 014377 80 NTK-KDLDRPYGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRCLVQYDK 157 (426)
Q Consensus 80 ~~~-~~~~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~~r~~~~ 157 (426)
+.. .....+...+.+..+.+.|.+.+ .+++++ +++|++++.++++++|++.+|++++||+||+|||.+|.+|+.+.
T Consensus 84 g~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~vR~~l~ 161 (386)
T PRK07236 84 GRVVQRRPMPQTQTSWNVLYRALRAAF--PAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRSTVRAQLL 161 (386)
T ss_pred CCEeeccCCCccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCchHHHHhC
Confidence 111 01112222357888888887654 456777 99999999888889999999999999999999999999998763
Q ss_pred CC----CCceeeEEEEEEEeecCCCC----CCceeeeecCCCcCCCchhhhccCC-----CCCcEEEEeeCCC-CeEE--
Q 014377 158 PY----NPGYQVAYGILAEVEEHPFD----LDKMVFMDWRDSHLNNNSELKEANS-----KIPTFLYAMPFSS-NRIF-- 221 (426)
Q Consensus 158 ~~----~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~P~~~-~~~~-- 221 (426)
+. ..++..+.++.......... .....+......+...++.....+. ....|+|..+... ....
T Consensus 162 ~~~~~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (386)
T PRK07236 162 PDVRPTYAGYVAWRGLVDEAALPPEARAALRDRFTFQLGPGSHILGYPVPGEDGSTEPGKRRYNWVWYRNAPAGEELDEL 241 (386)
T ss_pred CCCCCCcCCeEEEEEecchHHcCchhhhhcccceEEEEcCCceEEEEECCCCCCCcCCCCcEEEEEEEecCCCccchhhh
Confidence 32 22222222222111111000 0000000000000000000000000 0011333333322 0000
Q ss_pred Ee-cccCcC----CCCCChHHHHHHHHHHHhh-cCCccccccccc--eEeecCCCC-CCC-CCCceeEeeccCCCCCCCC
Q 014377 222 LE-ETSLVA----RPGVPMKDIQERMVARLKH-LGIKVRSIEEDE--HCVIPMGGP-LPV-LPQRVVGIGGTAGMVHPST 291 (426)
Q Consensus 222 v~-~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~p~~~~-~~~-~~~~v~liGdAa~~~~P~~ 291 (426)
.. .+.... .+....++..+.+.+.+.. +...+.++.+.. ....++... .+. ..+|++++|||||.++|+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~ 321 (386)
T PRK07236 242 LTDRDGTRRPFSVPPGALRDDVLAELRDDAAELLAPVFAELVEATAQPFVQAIFDLEVPRMAFGRVALLGDAAFVARPHT 321 (386)
T ss_pred cccCCCccccCCCCccccCHHHHHHHHHHHHHhcCHHHHHHHhhCcCchhhhhhcccCcccccCcEEEEecccccCCCcc
Confidence 00 000000 0111122333444433332 222222221111 011122111 223 4689999999999999999
Q ss_pred cHHHHHHHHhcHHHHHHHHHhcCCCCCCchhhhHHHHHH
Q 014377 292 GYMVARTLAAAPIVANAIVRSLSSDRSISGHKLSAEVWK 330 (426)
Q Consensus 292 G~G~~~a~~~a~~la~~i~~~l~~~~~~~~~~~y~~~~~ 330 (426)
|||+|+|++||..|+++|..... +....+..|++.++
T Consensus 322 GqG~n~aieDA~~La~~L~~~~~--~~~~al~~Ye~~R~ 358 (386)
T PRK07236 322 AAGVAKAAADAVALAEALAAAAG--DIDAALAAWEAERL 358 (386)
T ss_pred hhhHHHHHHHHHHHHHHHHhccc--chHHHHHHHHHHhh
Confidence 99999999999999999986421 12256777886654
No 55
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.96 E-value=5.2e-27 Score=226.89 Aligned_cols=309 Identities=17% Similarity=0.176 Sum_probs=172.4
Q ss_pred cEEEECchHHHHHHHHHHHHCC-CcEEEEcCCCCCCCCCcccc--h---hHHHhhcCchhhhhhcc-------CCeEEEe
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAG-LSVCSIDPSPKLIWPNNYGV--W---VDEFEAMDLLDCLDTTW-------SGAVVHI 77 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G-~~V~liE~~~~~~~~~~~g~--~---~~~l~~~~~~~~~~~~~-------~~~~~~~ 77 (426)
+|+||||||+||++|+.|++.| ++|+|+||.+... ....|. + ...|+.+|+.+.+.... ....+..
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~-~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~ 80 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFG-EVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEW 80 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCC-CCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEE
Confidence 6999999999999999999998 6999999987642 111111 2 23477788754433211 1111111
Q ss_pred cCC-Ccccc------CCCccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCC
Q 014377 78 DDN-TKKDL------DRPYGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFS 149 (426)
Q Consensus 78 ~~~-~~~~~------~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~ 149 (426)
... ..... ..++..++|..|.+.|.+.+.. ..++ +++|++++.++++++|.+.+|.+++||+||+|||.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~--~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~ 158 (414)
T TIGR03219 81 RNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPE--GIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIK 158 (414)
T ss_pred EecCccceeeeeccccCCcccCCHHHHHHHHHHhCCC--ceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCcc
Confidence 111 11111 1122348999999999987743 4455 999999998888899999999999999999999999
Q ss_pred CccccccCC---------CCCceeeEEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeE
Q 014377 150 RCLVQYDKP---------YNPGYQVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRI 220 (426)
Q Consensus 150 s~~r~~~~~---------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~ 220 (426)
|.+|+.+.. ...++....++ +............ . + ..+.........+ ..+++..+|..++..
T Consensus 159 S~vR~~l~~~~~~~~~~p~~~g~~~~r~~-~~~~~~~~~~~~~-~--~-~~~~~~~~~~~~~---~~~~~~~~p~~~g~~ 230 (414)
T TIGR03219 159 SALRDYVLQGQGQAPVRPRFSGTCAYRGL-VDSLQLREAYRAA-G--L-DEHLVDVPQMYLG---LDGHILTFPVRQGRL 230 (414)
T ss_pred HHHHHHhcCccCCCCCCccccCcEEEEEE-eeHHHHhhhhccc-c--c-cccccccceEEEc---CCCeEEEEECCCCcE
Confidence 999987531 12232222222 2111100000000 0 0 0000000000000 024455678776653
Q ss_pred E--EecccCc--------CCCCCChHHHHHHHHHHHhhcCCccccccccc--eEeecCC--CCCCCC-CCceeEeeccCC
Q 014377 221 F--LEETSLV--------ARPGVPMKDIQERMVARLKHLGIKVRSIEEDE--HCVIPMG--GPLPVL-PQRVVGIGGTAG 285 (426)
Q Consensus 221 ~--v~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~--~~~~~~-~~~v~liGdAa~ 285 (426)
+ +-..... .......+...+.+.+.+..+...+.+++... ...+++. ...+.| .+|++|+|||||
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~w~~grv~LiGDAAH 310 (414)
T TIGR03219 231 INVVAFISDRSQPKPTWPSDTPWVREATQREMLDAFAGWGDAARALLECIPAPTLWALHDLAELPGYVHGRVALIGDAAH 310 (414)
T ss_pred EEEEEEEcCcccccCCCCCCCcccCccCHHHHHHHhcCCCHHHHHHHHhCCCCCceeeeecccccceeeCcEEEEEcccC
Confidence 1 1100000 00111111122333333333322222211110 0111211 123333 589999999999
Q ss_pred CCCCCCcHHHHHHHHhcHHHHHHHHHhcCCCCC-CchhhhHHHHHH
Q 014377 286 MVHPSTGYMVARTLAAAPIVANAIVRSLSSDRS-ISGHKLSAEVWK 330 (426)
Q Consensus 286 ~~~P~~G~G~~~a~~~a~~la~~i~~~l~~~~~-~~~~~~y~~~~~ 330 (426)
.+.|+.|||.|+|++||..|++.|.....+... ...++.|++.++
T Consensus 311 ~m~P~~GqGa~~AieDA~~La~~L~~~~~~~~~~~~al~~Ye~~R~ 356 (414)
T TIGR03219 311 AMLPHQGAGAGQGLEDAYFLARLLGDTELEAGDLPALLEAYDDVRR 356 (414)
T ss_pred CCCCCcCcchHhHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHh
Confidence 999999999999999999999999865432222 256778887654
No 56
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=99.95 E-value=4.8e-27 Score=212.19 Aligned_cols=299 Identities=17% Similarity=0.192 Sum_probs=156.3
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCC-Ccccchh---HHHhhcCchhhhhhcc-C--CeEEEecCCC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWP-NNYGVWV---DEFEAMDLLDCLDTTW-S--GAVVHIDDNT 81 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~-~~~g~~~---~~l~~~~~~~~~~~~~-~--~~~~~~~~~~ 81 (426)
+.+|+|||||++|+++|..|++.|++|+|+|+...++.. ...+.+. +.++..++.+.+.... + +..+......
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L~~ng~~aLkai~~~e~i~~~gip~~~~v~~~~~sg 81 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNGWRALKAIGLKEQIREQGIPLGGRVLIHGDSG 81 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCcceeehhhHHHHHHHcccHHHHHHhcCcccceeeeecCCC
Confidence 458999999999999999999999999999997655322 1222222 3466777655443321 2 2212222111
Q ss_pred ccccCCCcc-------ccCHHHHHHHHHHHHHh-CCcEEE-E----EEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCC
Q 014377 82 KKDLDRPYG-------RVNRKLLKSKMLQKCIT-NGVKFH-Q----AKVIKVIHEESKSLLICNDGVTIQAAVVLDATGF 148 (426)
Q Consensus 82 ~~~~~~~~~-------~v~r~~l~~~L~~~~~~-~gv~~~-~----~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~ 148 (426)
......+|. .+.|+.+.+.++..+.. ..+++. . ..+..++.......|.+.||.++++|++|+|||+
T Consensus 82 ~~~~~~~~~~~~~~i~r~~~r~ll~~lL~~a~~~~~ikf~~~~~~~~~~~~~~~~~~~~~v~l~~g~~~~~dlligCDGa 161 (420)
T KOG2614|consen 82 KEVSRILYGEPDEYILRINRRNLLQELLAEALPTGTIKFHSNLSCTSKDVEIETLGKKLVVHLSDGTTVKGDLLIGCDGA 161 (420)
T ss_pred CeeEecccCCchHHHHHHHHHHHHHHHHHhhcCCCeeecccccccccccceeeecccccceecCCCcEEEeeEEEEcCch
Confidence 111111221 24455555554444444 445544 2 2344455555556788999999999999999999
Q ss_pred CCccccccCC---CCCceeeEEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeEEEecc
Q 014377 149 SRCLVQYDKP---YNPGYQVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEET 225 (426)
Q Consensus 149 ~s~~r~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~ 225 (426)
+|.+|+.+.. ...+++...|+- ..++ ..+...-++..... +...+..+....-++|.+-.+-+..+....
T Consensus 162 ~S~Vr~~l~~~~p~~~~~~ayrg~~-~~~~-~~~~~~~vf~~~~~-----~~~~~~~~~~~~~~y~~~~k~~t~t~~~~~ 234 (420)
T KOG2614|consen 162 YSKVRKWLGFKEPRYDGSQAYRGLG-FIPN-GIPFGKKVFAIYGN-----GLHSWPRPGFHLIAYWFLDKSLTSTDFAPF 234 (420)
T ss_pred HHHHHHHhcccCCcceeEEEEeeee-eccC-CCCcccceecccCC-----eEEEcccCCceEEEEEeecCCcccccccCc
Confidence 9999998754 345556555554 2221 11111111111100 000000000001122222111111111110
Q ss_pred cCcCCCCCChHHHHHHHHHHHhhc-C-CccccccccceEee-cCCCC-CCCCCCceeEeeccCCCCCCCCcHHHHHHHHh
Q 014377 226 SLVARPGVPMKDIQERMVARLKHL-G-IKVRSIEEDEHCVI-PMGGP-LPVLPQRVVGIGGTAGMVHPSTGYMVARTLAA 301 (426)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~-p~~~~-~~~~~~~v~liGdAa~~~~P~~G~G~~~a~~~ 301 (426)
...+.......+..+.+.+.+++. . ...+.+.+...... |+... ....+++++|+|||+|.|.|+.|||+|.|++|
T Consensus 235 ~e~~~l~~~~~~v~~~~~en~~d~i~~~~~e~i~~t~l~~r~p~~~i~~~~s~~~vvL~GDAaHaM~Pf~GQG~n~a~ED 314 (420)
T KOG2614|consen 235 DEPEKLKKTSLEVVDFFPENFPDIIELTGEESIVRTPLADRPPWPLISVKCSPGNVVLLGDAAHAMTPFLGQGGNCAFED 314 (420)
T ss_pred CCHHHHhhhHHHHHHHhHHhHHHHHHhcChHHhhhchhhhcCCcCeeeeccCCCeEEEecccccccCCcccccccchHHH
Confidence 000001111223333333444332 1 11122222111111 11000 11134689999999999999999999999999
Q ss_pred cHHHHHHHHHhcC
Q 014377 302 APIVANAIVRSLS 314 (426)
Q Consensus 302 a~~la~~i~~~l~ 314 (426)
+..||+++.++..
T Consensus 315 ~~VLa~~L~~~~~ 327 (420)
T KOG2614|consen 315 CVVLAECLDEAIN 327 (420)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999999876
No 57
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.95 E-value=7.9e-26 Score=223.36 Aligned_cols=307 Identities=14% Similarity=0.137 Sum_probs=171.1
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCC-----Ccccch---hHHHhhcCch--hh-hhhcc-CCeE
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWP-----NNYGVW---VDEFEAMDLL--DC-LDTTW-SGAV 74 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~-----~~~g~~---~~~l~~~~~~--~~-~~~~~-~~~~ 74 (426)
.+.++|+||||||+|+++|+.|++.|++|+|||+++..... ...+.+ ...|+.+++. +. ..... ....
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~ 158 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDR 158 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCcccce
Confidence 45689999999999999999999999999999997632111 111222 2346677642 11 11111 0000
Q ss_pred -------------EEecCCCc-cccCCCc-cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEE
Q 014377 75 -------------VHIDDNTK-KDLDRPY-GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQ 138 (426)
Q Consensus 75 -------------~~~~~~~~-~~~~~~~-~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~ 138 (426)
+.+..... .....++ ..|+|..|.+.|.+.+.. . .++ +++|++++.+++.++|++.+|++++
T Consensus 159 i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~-~-~i~~g~~V~~I~~~~d~VtV~~~dG~ti~ 236 (668)
T PLN02927 159 INGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGE-D-VIRNESNVVDFEDSGDKVTVVLENGQRYE 236 (668)
T ss_pred eeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCC-C-EEEcCCEEEEEEEeCCEEEEEECCCCEEE
Confidence 11110000 0011222 248999999999776532 2 245 7899999988889999999999999
Q ss_pred cCEEEECCCCCCccccccCCCC-CceeeEEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCC
Q 014377 139 AAVVLDATGFSRCLVQYDKPYN-PGYQVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSS 217 (426)
Q Consensus 139 a~~vV~AdG~~s~~r~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 217 (426)
+|+||+|||.+|.+|+.+.+.. ..+....++...++..+..........+.. . ..++...|.++
T Consensus 237 aDlVVGADG~~S~vR~~l~g~~~~~~sG~~~~rgi~~~~p~~~~~~~~~~~~G-----------~----~~~~v~~~v~~ 301 (668)
T PLN02927 237 GDLLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIADFIPADIESVGYRVFLG-----------H----KQYFVSSDVGG 301 (668)
T ss_pred cCEEEECCCCCcHHHHHhcCCCCCcccceEEEEEEcCCCcccccccceEEEEc-----------C----CeEEEEEcCCC
Confidence 9999999999999998763321 111111122111111111111100000000 0 12333345544
Q ss_pred CeEEE-ecccCcCCCCCChHHHHHHHHHHHhhcCCccccccc----cceEeecCCC--CCCCC-CCceeEeeccCCCCCC
Q 014377 218 NRIFL-EETSLVARPGVPMKDIQERMVARLKHLGIKVRSIEE----DEHCVIPMGG--PLPVL-PQRVVGIGGTAGMVHP 289 (426)
Q Consensus 218 ~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~p~~~--~~~~~-~~~v~liGdAa~~~~P 289 (426)
+.+.+ .............+..++.+.+.+..+...+.+++. .....+++.. +.+.| .+|++|+|||||.++|
T Consensus 302 g~~~~~~f~~~p~~~~~~~~~~~e~L~~~f~~w~~~v~elI~~t~~~~i~~~~iyd~~p~~~W~~grVvLiGDAAH~~~P 381 (668)
T PLN02927 302 GKMQWYAFHEEPAGGADAPNGMKKRLFEIFDGWCDNVLDLLHATEEDAILRRDIYDRSPGFTWGKGRVTLLGDSIHAMQP 381 (668)
T ss_pred CeEEEEEEEECCccccccchhHHHHHHHHhccCCHHHHHHHHhCccccceeeeEEeccCCCccccCcEEEEcCccCCCCC
Confidence 43321 110000000112233445555555544322222211 1111122221 22234 5899999999999999
Q ss_pred CCcHHHHHHHHhcHHHHHHHHHhcCCC-------CCCchhhhHHHHHH
Q 014377 290 STGYMVARTLAAAPIVANAIVRSLSSD-------RSISGHKLSAEVWK 330 (426)
Q Consensus 290 ~~G~G~~~a~~~a~~la~~i~~~l~~~-------~~~~~~~~y~~~~~ 330 (426)
+.|||.|+|++||..||.+|.+.++.. +...++..|++.++
T Consensus 382 ~~GqG~n~AieDa~~La~~L~~~~~~~~~~~~~~~~~~aL~~Ye~~R~ 429 (668)
T PLN02927 382 NMGQGGCMAIEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYEESRR 429 (668)
T ss_pred ccccchHHHHHHHHHHHHHHHHhhccccccCCcccHHHHHHHHHHHHH
Confidence 999999999999999999998765321 11245667876543
No 58
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.93 E-value=6.6e-25 Score=212.06 Aligned_cols=304 Identities=17% Similarity=0.166 Sum_probs=169.9
Q ss_pred cEEEECchHHHHHHHHHHHHCC---CcEEEEcCCCCCCCCCcccchh---HHHhhcCchhh--hhh------------cc
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAG---LSVCSIDPSPKLIWPNNYGVWV---DEFEAMDLLDC--LDT------------TW 70 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G---~~V~liE~~~~~~~~~~~g~~~---~~l~~~~~~~~--~~~------------~~ 70 (426)
||+|||||+||.++|..|++.+ ++|+|||+...+.....-+.+. ..++.+|+.+. +.. .|
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~~~vGe~~~p~~~~~~~~lgi~e~~~~~~~~~~~k~g~~f~~w 80 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPRIGVGESTLPSLRPFLRRLGIDEADFMRACDATFKLGIRFVNW 80 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS---SSEEE--THHHHCHHHHT--HHHHCHHCT-EEESEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCCCccccchHHHHHHHHHcCCChHHHHHHhCCeEeccEEeeec
Confidence 7999999999999999999998 9999999987654333222222 22455666533 221 12
Q ss_pred C--CeEEEecCCC-cc-------------------------------------c--------cCCCcc-ccCHHHHHHHH
Q 014377 71 S--GAVVHIDDNT-KK-------------------------------------D--------LDRPYG-RVNRKLLKSKM 101 (426)
Q Consensus 71 ~--~~~~~~~~~~-~~-------------------------------------~--------~~~~~~-~v~r~~l~~~L 101 (426)
. +.....+... .. . ....|+ +++|..|++.|
T Consensus 81 ~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR~~fd~~L 160 (454)
T PF04820_consen 81 GERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDRAKFDQFL 160 (454)
T ss_dssp SSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEHHHHHHHH
T ss_pred CCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeHHHHHHHH
Confidence 2 1111111100 00 0 001122 58999999999
Q ss_pred HHHHHhCCcEEEEEEEEEEEEeCCe--EEEEEcCCcEEEcCEEEECCCCCCcccccc-CCC----CCceeeEEEEEEEee
Q 014377 102 LQKCITNGVKFHQAKVIKVIHEESK--SLLICNDGVTIQAAVVLDATGFSRCLVQYD-KPY----NPGYQVAYGILAEVE 174 (426)
Q Consensus 102 ~~~~~~~gv~~~~~~v~~i~~~~~~--~~v~~~~g~~i~a~~vV~AdG~~s~~r~~~-~~~----~~~~~~~~g~~~~~~ 174 (426)
.+.|.+.||+++..+|+++..++++ ..|++.+|++++||+||||+|..|.+.+.. ... .........+.+.++
T Consensus 161 ~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L~~~~L~~~~~~~~~~L~~d~av~~~~~ 240 (454)
T PF04820_consen 161 RRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLLARKALKVGFRDWSDWLPNDRAVAVQVP 240 (454)
T ss_dssp HHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CCCCCCT-EEEEEETTTCEEEEEEEEEEE
T ss_pred HHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchhhHhhhcCCCccccccccccEEEEEecC
Confidence 9999999999985578888877554 368888999999999999999999887653 111 011111233333333
Q ss_pred cCC-CCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeEEEecccCcCCCCCChHHHHHHHHHHHhhcCCcc
Q 014377 175 EHP-FDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETSLVARPGVPMKDIQERMVARLKHLGIKV 253 (426)
Q Consensus 175 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (426)
... ..+.+.. . ....||+|.+|+.+++.. +... .....++++..+.+.+++.......
T Consensus 241 ~~~~~~~~T~~-~-----------------a~~~GW~W~IPL~~~~~~-G~V~--s~~~~s~~~A~~~l~~~l~~~~~~~ 299 (454)
T PF04820_consen 241 NEDPPEPYTRS-T-----------------AFEAGWIWYIPLQNRRGS-GYVY--SSDFISDDEAEAELLAYLGGSPEAE 299 (454)
T ss_dssp -SSCTTSSEEE-E-----------------EESSEEEEEEEESSEEEE-EEEE--ETTTSHHHHHHHHHHHHHTCHCTTS
T ss_pred cCCCCCCceeE-E-----------------ecCCceEEEccCCCcceE-EEEe--ccccCCHHHHHHHHHHhcchhhhcc
Confidence 221 1111100 0 011499999999987654 3221 1222355555666666665432111
Q ss_pred ccccccceEeecCC--CCCCCCCCceeEeeccCCCCCCCCcHHHHHHHHhcHHHHHHHHHhcCCCCCCchhhhHHHHHHh
Q 014377 254 RSIEEDEHCVIPMG--GPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVRSLSSDRSISGHKLSAEVWKD 331 (426)
Q Consensus 254 ~~~~~~~~~~~p~~--~~~~~~~~~v~liGdAa~~~~P~~G~G~~~a~~~a~~la~~i~~~l~~~~~~~~~~~y~~~~~~ 331 (426)
. ..+++. .....+.+|++++||||++++|+.+.|+..++..+..+++.+.... ......+.|++.+..
T Consensus 300 ~-------~~i~~~~g~~~~~~~~n~vavGdAAgFiDPL~StGI~la~~aa~~l~~~l~~~~---~~~~~~~~Yn~~~~~ 369 (454)
T PF04820_consen 300 P-------RHIRFRSGRRKQFWGKNCVAVGDAAGFIDPLESTGIHLALSAAEALAEALPDDD---FSPAALDRYNRRMRR 369 (454)
T ss_dssp C-------EEEE-S-EEESSSEETTEEE-CCCTEE--GGGSHHHHHHHHHHHHHHHTHHCTT---CCHHHHHHHHHHHHH
T ss_pred h-------hhhcccccchhhcccCCEEEEcchhhccCccccccHHHHHHHHHHHHHhcccCC---CCHHHHHHHHHHHHH
Confidence 1 222221 1233467899999999999999999999999997777666665321 112345667766665
Q ss_pred cCCHHHHHHHHHHH
Q 014377 332 LWPIERRRQREFFC 345 (426)
Q Consensus 332 ~~~~~~~~~~~~~~ 345 (426)
.|...+.....+|.
T Consensus 370 ~~~~~~~fi~~hY~ 383 (454)
T PF04820_consen 370 EYERIRDFISLHYQ 383 (454)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 55544444444444
No 59
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.90 E-value=9.2e-23 Score=209.62 Aligned_cols=286 Identities=17% Similarity=0.154 Sum_probs=159.8
Q ss_pred cEEEECchHHHHHHHHHHHHC--CCcEEEEcCCCCCCCCCcccc--hhHH---HhhcC--chhhhh---hccCCeEEEec
Q 014377 11 DLAVVGGGPAGLAVAQQVSEA--GLSVCSIDPSPKLIWPNNYGV--WVDE---FEAMD--LLDCLD---TTWSGAVVHID 78 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~--G~~V~liE~~~~~~~~~~~g~--~~~~---l~~~~--~~~~~~---~~~~~~~~~~~ 78 (426)
+|+||||||||+++|+.|++. |++|+|+|+.+... ...+|+ +... +..++ +...+. ..|....+...
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~-~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYD-TFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHFK 80 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCc-ccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEEC
Confidence 799999999999999999998 89999999987531 111222 2222 22222 111111 12444444432
Q ss_pred CCCccccCCCccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCccccccC
Q 014377 79 DNTKKDLDRPYGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRCLVQYDK 157 (426)
Q Consensus 79 ~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~~r~~~~ 157 (426)
.........+|..++|..|.+.|.+++.+.|++++ +++|++++.. ..++|+||+|||.+|.+|+++.
T Consensus 81 g~~~~~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~~------------~~~~D~VVgADG~~S~vR~~~~ 148 (765)
T PRK08255 81 GRRIRSGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQAL------------AADADLVIASDGLNSRIRTRYA 148 (765)
T ss_pred CEEEEECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhhh------------hcCCCEEEEcCCCCHHHHHHHH
Confidence 21111112345568999999999999999999998 8887665321 2479999999999999998642
Q ss_pred CCC----CceeeEEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEE--EEeeCCCCe-EEEecccCc--
Q 014377 158 PYN----PGYQVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFL--YAMPFSSNR-IFLEETSLV-- 228 (426)
Q Consensus 158 ~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~P~~~~~-~~v~~~~~~-- 228 (426)
... ......+.+. ... ..+ +...+...... .+++ ..+|..++. .++......
T Consensus 149 ~~~~~~~~~~~~~~~w~-g~~-~~~--~~~~~~~~~~~---------------~g~~~~~~y~~~~~~~~~~~~~~~~~~ 209 (765)
T PRK08255 149 DTFQPDIDTRRCRFVWL-GTH-KVF--DAFTFAFEETE---------------HGWFQAHAYRFDDDTSTFIVETPEEVW 209 (765)
T ss_pred hhcCCceecCCCceEEe-cCC-Ccc--cceeEEEEecC---------------CceEEEEEeeeCCCCcEEEEEcCHHHH
Confidence 111 0001112221 111 011 11111000000 1222 223444332 222211110
Q ss_pred ---CCCCCChHHHHHHHHHHHhhcCCccccccc------cceEeecCCCCCCCC-CCc----eeEeeccCCCCCCCCcHH
Q 014377 229 ---ARPGVPMKDIQERMVARLKHLGIKVRSIEE------DEHCVIPMGGPLPVL-PQR----VVGIGGTAGMVHPSTGYM 294 (426)
Q Consensus 229 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~p~~~~~~~~-~~~----v~liGdAa~~~~P~~G~G 294 (426)
.....+.++..+.+.+.+..+.....-+.. .....++.. ..+.| .++ ++++|||||.++|..|+|
T Consensus 210 ~~~~~~~~~~~~~~~~l~~~f~~~~~~~~li~~~~~~~~~~w~~~~~~-~~~~w~~gr~~~~v~liGDAAH~~~P~~GqG 288 (765)
T PRK08255 210 RAAGLDEMSQEESIAFCEKLFADYLDGHPLMSNASHLRGSAWINFPRV-VCERWVHWNRRVPVVLMGDAAHTAHFSIGSG 288 (765)
T ss_pred HhcCCccCCHHHHHHHHHHHhHHhcCCCcccccccccccceeeeccee-ccCCCccCCCcccEEEEEcCcccCCCCcchh
Confidence 112234555666666666554221111110 011112211 12233 466 999999999999999999
Q ss_pred HHHHHHhcHHHHHHHHHhcCCCCCCchhhhHHHHHHh
Q 014377 295 VARTLAAAPIVANAIVRSLSSDRSISGHKLSAEVWKD 331 (426)
Q Consensus 295 ~~~a~~~a~~la~~i~~~l~~~~~~~~~~~y~~~~~~ 331 (426)
+++|++||..|+++|..... +....++.|++.++.
T Consensus 289 ~~~aieDa~~La~~L~~~~~--~~~~al~~ye~~R~~ 323 (765)
T PRK08255 289 TKLALEDAIELARCLHEHPG--DLPAALAAYEEERRV 323 (765)
T ss_pred HHHHHHHHHHHHHHHHHccc--cHHHHHHHHHHHHHH
Confidence 99999999999999986421 223567888877653
No 60
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.89 E-value=1.3e-21 Score=174.01 Aligned_cols=286 Identities=18% Similarity=0.228 Sum_probs=179.1
Q ss_pred CCCCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchh-----HHHhhcCchhhhhh---cc-CCeEE
Q 014377 5 SKGLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWV-----DEFEAMDLLDCLDT---TW-SGAVV 75 (426)
Q Consensus 5 ~~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~-----~~l~~~~~~~~~~~---~~-~~~~~ 75 (426)
+....+||||||||.+|+++|+.|+|.|.+|+||||+-.. ..+-.|.+. ..|.++|+.+++.. .+ .+..+
T Consensus 41 ~~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~E-PdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~i 119 (509)
T KOG1298|consen 41 RNDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSE-PDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAI 119 (509)
T ss_pred ccCCcccEEEECCcchHHHHHHHHhhCCcEEEEEeccccc-chHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEE
Confidence 3456799999999999999999999999999999997432 112233332 24789999887753 22 44444
Q ss_pred EecCCCccccCCC---c-----c-ccCHHHHHHHHHHHHHh-CCcEEEEEEEEEEEEeCCeE---EEEEcCCc--EEEcC
Q 014377 76 HIDDNTKKDLDRP---Y-----G-RVNRKLLKSKMLQKCIT-NGVKFHQAKVIKVIHEESKS---LLICNDGV--TIQAA 140 (426)
Q Consensus 76 ~~~~~~~~~~~~~---~-----~-~v~r~~l~~~L~~~~~~-~gv~~~~~~v~~i~~~~~~~---~v~~~~g~--~i~a~ 140 (426)
+.++ +...+..| + + ..+..+|.+.|++.+.. ++|++.++.|.++..+++.+ +.+..+|+ +..|.
T Consensus 120 fk~g-k~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGtV~sLlee~gvvkGV~yk~k~gee~~~~Ap 198 (509)
T KOG1298|consen 120 FKDG-KEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEGTVKSLLEEEGVVKGVTYKNKEGEEVEAFAP 198 (509)
T ss_pred EeCC-ceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeeeeHHHHHhccCeEEeEEEecCCCceEEEecc
Confidence 4433 22222111 1 1 26788999999999887 89998888898887776643 33344443 56799
Q ss_pred EEEECCCCCCccccccCCC--CCceeeEEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCC-
Q 014377 141 VVLDATGFSRCLVQYDKPY--NPGYQVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSS- 217 (426)
Q Consensus 141 ~vV~AdG~~s~~r~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~- 217 (426)
+.|.|||..|.+|+.+-.. .....++.|+..+-...+.+...-+++. . +..+-+.|.+.
T Consensus 199 LTvVCDGcfSnlRrsL~~~~v~~V~S~fVG~vl~N~~l~~p~hghvIL~--~----------------pspil~Y~ISSt 260 (509)
T KOG1298|consen 199 LTVVCDGCFSNLRRSLCDPKVEEVPSYFVGLVLKNCRLPAPNHGHVILS--K----------------PSPILVYQISST 260 (509)
T ss_pred eEEEecchhHHHHHHhcCCcccccchheeeeeecCCCCCCCCcceEEec--C----------------CCcEEEEEecch
Confidence 9999999999999986442 2234568888776543333333222221 1 23344445444
Q ss_pred -CeEEEecccCcCCCCCChHHHHHHHHHHHhhc-CCccc-----cccccceEeecCCCCCCC--CCCceeEeeccCCCCC
Q 014377 218 -NRIFLEETSLVARPGVPMKDIQERMVARLKHL-GIKVR-----SIEEDEHCVIPMGGPLPV--LPQRVVGIGGTAGMVH 288 (426)
Q Consensus 218 -~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~p~~~~~~~--~~~~v~liGdAa~~~~ 288 (426)
-+++++.... .-|.....++...+.+....+ ...+. .+.+......|-....+. ...+++++|||-.+-|
T Consensus 261 EvRcl~~v~g~-~~Psi~~gem~~~mk~~v~PqiP~~lR~~F~~av~~g~irsmpn~~mpa~~~~~~G~illGDAfNMRH 339 (509)
T KOG1298|consen 261 EVRCLVDVPGQ-KLPSIANGEMATYMKESVAPQIPEKLRESFLEAVDEGNIRSMPNSSMPATLNDKKGVILLGDAFNMRH 339 (509)
T ss_pred heEEEEecCcc-cCCcccchhHHHHHHHhhCcCCCHHHHHHHHHHhhccchhcCccccCCCCcCCCCceEEEcccccccC
Confidence 4555544321 113334444555544333221 11111 112222233332222222 3478999999999999
Q ss_pred CCCcHHHHHHHHhcHHHHHHHHH
Q 014377 289 PSTGYMVARTLAAAPIVANAIVR 311 (426)
Q Consensus 289 P~~G~G~~~a~~~a~~la~~i~~ 311 (426)
|.+|.||.-++.|...|-+.|..
T Consensus 340 PltggGMtV~l~Di~lLr~ll~p 362 (509)
T KOG1298|consen 340 PLTGGGMTVALSDIVLLRRLLKP 362 (509)
T ss_pred CccCCceEeehhHHHHHHHHhcc
Confidence 99999999999999998887764
No 61
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.85 E-value=8.4e-20 Score=164.19 Aligned_cols=297 Identities=16% Similarity=0.244 Sum_probs=169.6
Q ss_pred cCcEEEECchHHHHHHHHHHHHC----CCcEEEEcCCCCC--C-------CCCccc----chhHHHhhcCchhhhhhc-c
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEA----GLSVCSIDPSPKL--I-------WPNNYG----VWVDEFEAMDLLDCLDTT-W 70 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~----G~~V~liE~~~~~--~-------~~~~~g----~~~~~l~~~~~~~~~~~~-~ 70 (426)
.|||+||||||+|+++|..|... .++|.|+|-...+ . +.+.+. ...+.++..+.++.+.+. .
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~~~R~ 115 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIFHDRY 115 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHhhhhcc
Confidence 79999999999999999999854 5799999987332 1 111111 122346666776655432 1
Q ss_pred CC-eEEEecCCC-cc-------ccCCCcc-ccCHHHHHHHHH--HHHHh-CCcEEE-EEEEEEEEEe-------C-CeEE
Q 014377 71 SG-AVVHIDDNT-KK-------DLDRPYG-RVNRKLLKSKML--QKCIT-NGVKFH-QAKVIKVIHE-------E-SKSL 128 (426)
Q Consensus 71 ~~-~~~~~~~~~-~~-------~~~~~~~-~v~r~~l~~~L~--~~~~~-~gv~~~-~~~v~~i~~~-------~-~~~~ 128 (426)
.. ......+.. .. ....+.+ .+....+...|. +...+ .++++. .+++..+... + ....
T Consensus 116 ~~~~~~~v~Ds~s~a~I~~~~d~~~~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~~~~~ 195 (481)
T KOG3855|consen 116 QKFSRMLVWDSCSAALILFDHDNVGIDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNGMWFH 195 (481)
T ss_pred ccccceeeecccchhhhhhccccccccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCcceEE
Confidence 11 111111111 11 1111222 355666666666 33323 688888 7787777652 1 1356
Q ss_pred EEEcCCcEEEcCEEEECCCCCCccccccCCCCCceee-EEEEEEEeecCC-CCCCceeeeecCCCcCCCchhhhccCCCC
Q 014377 129 LICNDGVTIQAAVVLDATGFSRCLVQYDKPYNPGYQV-AYGILAEVEEHP-FDLDKMVFMDWRDSHLNNNSELKEANSKI 206 (426)
Q Consensus 129 v~~~~g~~i~a~~vV~AdG~~s~~r~~~~~~~~~~~~-~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (426)
+.+.||..+.+|++|+|||.+|.+|+.......++.+ ..|++......+ .......|..|..
T Consensus 196 i~l~dg~~~~~~LLigAdg~Ns~vR~~snid~~~~ny~~havVAtl~l~~~~~~~~~AwQRFlP---------------- 259 (481)
T KOG3855|consen 196 ITLTDGINFATDLLIGADGFNSVVRKASNIDVASWNYDQHAVVATLKLEEEAILNGVAWQRFLP---------------- 259 (481)
T ss_pred EEeccCceeeeceeeccccccchhhhhcCCCcccccccceeeeEEEEecccccccchhHHhcCC----------------
Confidence 7889999999999999999999999987665444332 445554443222 1111111221111
Q ss_pred CcEEEEeeCCCCe---EEEecccCcCC-CCCChHHHHHHHHHH----------------------------Hhhc-----
Q 014377 207 PTFLYAMPFSSNR---IFLEETSLVAR-PGVPMKDIQERMVAR----------------------------LKHL----- 249 (426)
Q Consensus 207 ~~~~~~~P~~~~~---~~v~~~~~~~~-~~~~~~~~~~~~~~~----------------------------~~~~----- 249 (426)
-|-+..+|..++. +|-........ ..++++.+.+.+... +...
T Consensus 260 ~GpiAllpl~d~~s~LvWSts~~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~~~~~sl~~~~k~~~~ 339 (481)
T KOG3855|consen 260 TGPIALLPLSDTLSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESLLNTSKRLAN 339 (481)
T ss_pred CCceeecccccccccceeecCHHHHHHHhcCCchhHHHHHHHHHhccCCCchhhhchhhhhcchhhccHHHHhccCcccc
Confidence 1224445555442 22111100000 111222222222211 1110
Q ss_pred ---CCccccccccceEeecCCCCCC--CCCCceeEeeccCCCCCCCCcHHHHHHHHhcHHHHHHHHHhcCCCCCCch
Q 014377 250 ---GIKVRSIEEDEHCVIPMGGPLP--VLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVRSLSSDRSISG 321 (426)
Q Consensus 250 ---~~~~~~~~~~~~~~~p~~~~~~--~~~~~v~liGdAa~~~~P~~G~G~~~a~~~a~~la~~i~~~l~~~~~~~~ 321 (426)
...+.++....+..+|++.... ...+|+.++|||||-+||..|||+|++..|...|.+.+.+++..+.++..
T Consensus 340 ~q~pp~V~~v~dksRa~FPLgf~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~DlgS 416 (481)
T KOG3855|consen 340 QQYPPSVFEVGDKSRAQFPLGFGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGLDLGS 416 (481)
T ss_pred cccCCeEEEecccceeecccccccHHHhcCCchhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhcccccc
Confidence 1122233445566777664432 25799999999999999999999999999999999999999887766533
No 62
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.67 E-value=3.9e-14 Score=135.58 Aligned_cols=61 Identities=16% Similarity=0.162 Sum_probs=53.3
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRC 151 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~ 151 (426)
+.++...+...+.+.+.+.|++++ +++|++++.+++++.|++.+| +++||.||.|+|.++.
T Consensus 144 g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 144 GFLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVK 205 (376)
T ss_pred CEEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchh
Confidence 357888899999988888999999 899999998887888888777 7999999999998864
No 63
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.67 E-value=1.9e-15 Score=143.60 Aligned_cols=84 Identities=17% Similarity=0.147 Sum_probs=63.4
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEE-EEEcCCcEEEcCEEEECCCCCCcc-ccccCCCCCceeeE
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSL-LICNDGVTIQAAVVLDATGFSRCL-VQYDKPYNPGYQVA 166 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~-v~~~~g~~i~a~~vV~AdG~~s~~-r~~~~~~~~~~~~~ 166 (426)
+.++...+.+.|.+.+++.|++++ +++|++++.+++++. |.+.+|+ ++||.||.|+|.++.. .+..+... .....
T Consensus 142 g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~l~~~~~~~~-~~~~~ 219 (358)
T PF01266_consen 142 GVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQLLPLLGLDL-PLRPV 219 (358)
T ss_dssp EEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHHHHHTTTTSS-TEEEE
T ss_pred ccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccceeeeecccccc-ccccc
Confidence 358999999999999999999999 889999999999987 9999997 9999999999998754 22222211 33446
Q ss_pred EEEEEEeec
Q 014377 167 YGILAEVEE 175 (426)
Q Consensus 167 ~g~~~~~~~ 175 (426)
.+..+.++.
T Consensus 220 ~~~~~~~~~ 228 (358)
T PF01266_consen 220 RGQVLVLEP 228 (358)
T ss_dssp EEEEEEEEG
T ss_pred ceEEEEEcc
Confidence 666666654
No 64
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.66 E-value=8.4e-14 Score=137.58 Aligned_cols=205 Identities=12% Similarity=0.104 Sum_probs=120.4
Q ss_pred ccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCC----cEEEcCEEEECCCCCCcc-cccc-CCCC-Cc
Q 014377 91 RVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDG----VTIQAAVVLDATGFSRCL-VQYD-KPYN-PG 162 (426)
Q Consensus 91 ~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g----~~i~a~~vV~AdG~~s~~-r~~~-~~~~-~~ 162 (426)
.++...|...+...+.+.|++++ .++|++++.+++.+.|++.++ .+++|++||.|+|.++.- .+.. +... ..
T Consensus 151 ~vd~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~~~~ 230 (502)
T PRK13369 151 WVDDARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWVTDVIHRVAGSNSSRN 230 (502)
T ss_pred eecHHHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccHHHHHhhccCCCCCcc
Confidence 47889999999999999999999 889999998877777776554 369999999999999853 2322 2221 22
Q ss_pred eeeEEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeEEEecccCc-----CCCCCChHH
Q 014377 163 YQVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETSLV-----ARPGVPMKD 237 (426)
Q Consensus 163 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~-----~~~~~~~~~ 237 (426)
.....|..+.++. ........... . .+ ..++|++|..++.+.++.|... .....+.++
T Consensus 231 v~p~kG~~lv~~~-~~~~~~~~~~~--~--~d------------gr~~~i~P~~~~~~liGtTd~~~~~~~~~~~~~~~~ 293 (502)
T PRK13369 231 VRLVKGSHIVVPK-FWDGAQAYLFQ--N--PD------------KRVIFANPYEGDFTLIGTTDIAYEGDPEDVAADEEE 293 (502)
T ss_pred eEEeeEEEEEeCC-ccCCCceEEEe--C--CC------------CeEEEEEEecCCEEEEEecCccccCCCCCCCCCHHH
Confidence 3456777666642 22211111111 0 00 2568999998777777776432 123344444
Q ss_pred HHHHHH---HHHhhcCCccccccccceEeecCCCCC---CC--CCCceeEeec---cCCCCCCCCcHHHHHHHHhcHHHH
Q 014377 238 IQERMV---ARLKHLGIKVRSIEEDEHCVIPMGGPL---PV--LPQRVVGIGG---TAGMVHPSTGYMVARTLAAAPIVA 306 (426)
Q Consensus 238 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~--~~~~v~liGd---Aa~~~~P~~G~G~~~a~~~a~~la 306 (426)
+...+. ++++ ..+...++...-.+..|+...- +. ..+.++..-+ ..++++ ..|.++...-.-|..+.
T Consensus 294 i~~ll~~~~~~~~-~~l~~~~i~~~waGlRPl~~d~~~~~~~~sR~~~i~~~~~~g~~gli~-i~Ggk~Tt~r~~Ae~v~ 371 (502)
T PRK13369 294 IDYLLDAANRYFK-EKLRREDVVHSFSGVRPLFDDGAGNPSAVTRDYVFDLDAETGGAPLLS-VFGGKITTFRKLAEHAL 371 (502)
T ss_pred HHHHHHHHHHhhC-CCCCHhHEEEEeeceEEcCCCCCCCcccCCcceEEeeccccCCCCeEE-EeCChHhhHHHHHHHHH
Confidence 443333 3332 1233345556667777865211 11 1222333221 133444 34556776666677777
Q ss_pred HHHHHhcC
Q 014377 307 NAIVRSLS 314 (426)
Q Consensus 307 ~~i~~~l~ 314 (426)
+.+.+.+.
T Consensus 372 d~~~~~l~ 379 (502)
T PRK13369 372 ERLKPFFP 379 (502)
T ss_pred HHHHHhcC
Confidence 77777754
No 65
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.65 E-value=3.3e-15 Score=135.66 Aligned_cols=140 Identities=24% Similarity=0.284 Sum_probs=97.5
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCC------cccc-------------------hhHHHhhcC
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPN------NYGV-------------------WVDEFEAMD 61 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~------~~g~-------------------~~~~l~~~~ 61 (426)
++.+||+||||||||+++|..++++|.+|+|||+.+.++..- .|.. ..+.|.+..
T Consensus 1 ~~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft 80 (408)
T COG2081 1 MERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFT 80 (408)
T ss_pred CCcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCC
Confidence 357899999999999999999999999999999998762110 1111 011122222
Q ss_pred chhhhhhcc-CCeEEEecCCCccccCCCccc-cCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEE
Q 014377 62 LLDCLDTTW-SGAVVHIDDNTKKDLDRPYGR-VNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQ 138 (426)
Q Consensus 62 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~ 138 (426)
.+++++..- -+...+..+. .+-|.. -....+.+.|..++++.||+++ +++|.+++.+++...+.+.+|++++
T Consensus 81 ~~d~i~~~e~~Gi~~~e~~~-----Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~ 155 (408)
T COG2081 81 PEDFIDWVEGLGIALKEEDL-----GRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVK 155 (408)
T ss_pred HHHHHHHHHhcCCeeEEccC-----ceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEE
Confidence 222222110 1111111111 111111 3467888999999999999999 9999999999888999999999999
Q ss_pred cCEEEECCCCCCc
Q 014377 139 AAVVLDATGFSRC 151 (426)
Q Consensus 139 a~~vV~AdG~~s~ 151 (426)
||-+|.|+|..|.
T Consensus 156 ~d~lilAtGG~S~ 168 (408)
T COG2081 156 CDSLILATGGKSW 168 (408)
T ss_pred ccEEEEecCCcCC
Confidence 9999999997765
No 66
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.63 E-value=2.4e-13 Score=134.21 Aligned_cols=205 Identities=13% Similarity=0.145 Sum_probs=116.7
Q ss_pred ccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcC---C--cEEEcCEEEECCCCCCccc-cc-cCCC-CC
Q 014377 91 RVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICND---G--VTIQAAVVLDATGFSRCLV-QY-DKPY-NP 161 (426)
Q Consensus 91 ~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~---g--~~i~a~~vV~AdG~~s~~r-~~-~~~~-~~ 161 (426)
.++...|...+.+.+.+.|++++ +++|+++..+++.+.|.+.+ | .+++|+.||.|+|.++.-. +. .+.. ..
T Consensus 151 ~vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~~~ 230 (508)
T PRK12266 151 WVDDARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWVKQFLDDGLGLPSPY 230 (508)
T ss_pred ccCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccHHHHHhhccCCCCCc
Confidence 47888898899999999999999 89999998877777776553 4 3799999999999988422 22 2221 11
Q ss_pred ceeeEEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeEEEecccCcC-----CCCCChH
Q 014377 162 GYQVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETSLVA-----RPGVPMK 236 (426)
Q Consensus 162 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~-----~~~~~~~ 236 (426)
......|..+.++. ........+.. .+ ...++|++|..++.+.++.+.... ....+.+
T Consensus 231 ~i~p~kG~~lvl~~-~~~~~~~~~~~--~~--------------dgr~v~~~P~~~g~~liGttd~~~~~~~~~~~~~~~ 293 (508)
T PRK12266 231 GIRLVKGSHIVVPR-LFDHDQAYILQ--NP--------------DGRIVFAIPYEDDFTLIGTTDVEYKGDPAKVAISEE 293 (508)
T ss_pred ceeeeeeEEEEECC-cCCCCcEEEEe--CC--------------CCCEEEEEEeCCCeEEEecCCCCCCCCCCCCCCCHH
Confidence 23445666665542 12211111111 00 036789999988888888764321 1233444
Q ss_pred HHHHHHHHHHhhc---CCccccccccceEeecCCCC-CC--C--CCCceeEeec---cCCCCCCCCcHHHHHHHHhcHHH
Q 014377 237 DIQERMVARLKHL---GIKVRSIEEDEHCVIPMGGP-LP--V--LPQRVVGIGG---TAGMVHPSTGYMVARTLAAAPIV 305 (426)
Q Consensus 237 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~~-~~--~--~~~~v~liGd---Aa~~~~P~~G~G~~~a~~~a~~l 305 (426)
++. .+.+.+..+ .+...+++..-.+..|+... .+ . ..+.++...+ ..++++-.+| .+...-.-|..+
T Consensus 294 ~i~-~Ll~~~~~~~p~~l~~~~ii~~waG~RPl~~d~~~~~~~~sr~~~i~~~~~~g~~gli~v~Gg-k~Tt~r~mAe~~ 371 (508)
T PRK12266 294 EID-YLCKVVNRYFKKQLTPADVVWTYSGVRPLCDDESDSAQAITRDYTLELDDENGGAPLLSVFGG-KITTYRKLAEHA 371 (508)
T ss_pred HHH-HHHHHHHHhcCCCCCHHHEEEEeeeeEeeCCCCCCCcccCCcceEEEecccCCCCCeEEEEcC-hHHHHHHHHHHH
Confidence 443 333322221 23334556666777786432 11 1 1233443331 2445554444 355554445666
Q ss_pred HHHHHHhcC
Q 014377 306 ANAIVRSLS 314 (426)
Q Consensus 306 a~~i~~~l~ 314 (426)
.+.+.+.+.
T Consensus 372 ~~~~~~~l~ 380 (508)
T PRK12266 372 LEKLAPYLP 380 (508)
T ss_pred HHHHHHhcC
Confidence 666666653
No 67
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.63 E-value=1e-13 Score=141.54 Aligned_cols=61 Identities=21% Similarity=0.199 Sum_probs=54.6
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRC 151 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~ 151 (426)
+.++...+.+.|.+.+.+ |++++ +++|++++.+++++.|.+.+|..++|+.||.|+|.++.
T Consensus 403 G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 403 GWLCPAELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred CeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCcc
Confidence 457899999999999998 99999 89999999888888888888877899999999999875
No 68
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=99.60 E-value=5.3e-14 Score=127.01 Aligned_cols=313 Identities=17% Similarity=0.170 Sum_probs=167.6
Q ss_pred CcCcEEEECchHHHHHHHHHHHHC------CCcEEEEcCCCCCCCCCcccchhHH--HhhcCchh-----hhhhccCCeE
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEA------GLSVCSIDPSPKLIWPNNYGVWVDE--FEAMDLLD-----CLDTTWSGAV 74 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~------G~~V~liE~~~~~~~~~~~g~~~~~--l~~~~~~~-----~~~~~~~~~~ 74 (426)
..+||+|||||||||++|++|.+. .++|+|+|+....+-..-.|..++. ++++-.+. -+........
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~vT~d~ 154 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPVTSDK 154 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCcccccccccc
Confidence 469999999999999999988753 6899999999876543333322211 22211100 0000001111
Q ss_pred EEecCCC-cccc-------CCCccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCe-E-EEEEc-----------
Q 014377 75 VHIDDNT-KKDL-------DRPYGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESK-S-LLICN----------- 132 (426)
Q Consensus 75 ~~~~~~~-~~~~-------~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~-~-~v~~~----------- 132 (426)
+.|-... ...+ ......|.-..+.++|-++|++.|++++ +..+.++..++++ | .+-+.
T Consensus 155 ~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pK 234 (621)
T KOG2415|consen 155 FKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPK 234 (621)
T ss_pred eeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCcc
Confidence 1111100 0011 1111247889999999999999999999 7777777665443 2 23332
Q ss_pred ----CCcEEEcCEEEECCCCCCcccccc----CCCCCceeeEEEEE----EEeecCCCCCCc-eeeeecCCCcCCCchhh
Q 014377 133 ----DGVTIQAAVVLDATGFSRCLVQYD----KPYNPGYQVAYGIL----AEVEEHPFDLDK-MVFMDWRDSHLNNNSEL 199 (426)
Q Consensus 133 ----~g~~i~a~~vV~AdG~~s~~r~~~----~~~~~~~~~~~g~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 199 (426)
.|.++.|++.|-|.|.+..+.+++ ..+.......+|+- .+++...+.+.. .--+.|..+.
T Consensus 235 d~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n~e~qtYglGlKEvWei~~~~~~pG~v~HT~GwPl~~------- 307 (621)
T KOG2415|consen 235 DTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRENCEPQTYGLGLKEVWEIDPENHNPGEVAHTLGWPLDN------- 307 (621)
T ss_pred ccccccceecceeEEEeccccchhHHHHHHHhCcccCCCcceeccccceeEecChhhcCCcceeeeccCcccC-------
Confidence 245799999999999998877653 22221222244442 233322222211 1112222211
Q ss_pred hccCCCCCcEEEEeeCCCCeEEEecc--cCcCCCCCChHHHHHHHHH--HHhhcCCccccccccceEeecCCCC--CCC-
Q 014377 200 KEANSKIPTFLYAMPFSSNRIFLEET--SLVARPGVPMKDIQERMVA--RLKHLGIKVRSIEEDEHCVIPMGGP--LPV- 272 (426)
Q Consensus 200 ~~~~~~~~~~~~~~P~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~--~~~- 272 (426)
..+..+|+|.+- +..+.++.. ..-.+|-+++-.-.+++.. .+... ++-.+.+......+--++. .|.
T Consensus 308 ---~tYGGsFlYh~~--d~~VavGlVVgLdY~NP~lsP~~EFQk~K~hP~i~~v-leGgk~i~YgARaLNEGGfQsiPkl 381 (621)
T KOG2415|consen 308 ---DTYGGSFLYHFN--DPLVAVGLVVGLDYKNPYLSPYKEFQKMKHHPSISKV-LEGGKRIAYGARALNEGGFQSIPKL 381 (621)
T ss_pred ---CccCceeEEEcC--CCeEEEEEEEEecCCCCCCCHHHHHHHhhcCcchhhh-hcCcceeeehhhhhccCCcccCccc
Confidence 122357888764 344433322 1123455554332233321 11111 0111111111111111111 121
Q ss_pred CCCceeEeeccCCCCCCCCcHHHHHHHHhcHHHHHHHHHhcCCCCCCc--h--hhhHHHHHHhcC
Q 014377 273 LPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVRSLSSDRSIS--G--HKLSAEVWKDLW 333 (426)
Q Consensus 273 ~~~~v~liGdAa~~~~P~~G~G~~~a~~~a~~la~~i~~~l~~~~~~~--~--~~~y~~~~~~~~ 333 (426)
.-++=.+||=+|++++---=.|...||.++..+|+.|-+++.+.+... . ...|++.++..|
T Consensus 382 ~FPGG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~~~~~k~~~~~~~~Ye~nlkds~ 446 (621)
T KOG2415|consen 382 VFPGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKGLPQSKMAGLDPTTYEENLKDSY 446 (621)
T ss_pred ccCCceEeecccccccccccccchhhhhcchhHHHHHHHHHhcCccccccccChhhHHHhhhhhH
Confidence 224457899999999988888999999999999999999996554211 1 346776665544
No 69
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.60 E-value=3e-13 Score=130.82 Aligned_cols=195 Identities=14% Similarity=0.031 Sum_probs=101.1
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEe-CCeE-EEEEcCCcEEEcCEEEECCCCCC-ccccccCCCCCceee
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHE-ESKS-LLICNDGVTIQAAVVLDATGFSR-CLVQYDKPYNPGYQV 165 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~-~~~~-~v~~~~g~~i~a~~vV~AdG~~s-~~r~~~~~~~~~~~~ 165 (426)
+.++...+...|.+.+.+.|++++ +++|++++.. ++.+ .|++.+| ++.|+.||.|.|.++ .+.+..+...+...
T Consensus 178 g~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g~~~~~~~- 255 (407)
T TIGR01373 178 GTARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMAGFRLPIES- 255 (407)
T ss_pred CcCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHcCCCCCcCc-
Confidence 357778888889999999999999 8899999754 3444 4667666 699997777666555 44443322211111
Q ss_pred EEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeEEEecccCc--CC-CCCChHHHHHHH
Q 014377 166 AYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETSLV--AR-PGVPMKDIQERM 242 (426)
Q Consensus 166 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~--~~-~~~~~~~~~~~~ 242 (426)
..+..+..+ +.......+++. ....+|+.|..++++.++.+... .. ...+. +..+.+
T Consensus 256 ~~~~~~~~~-~~~~~~~~~~~~------------------~~~~~y~~p~~~g~~~ig~~~~~~~~~~~~~~~-~~~~~l 315 (407)
T TIGR01373 256 HPLQALVSE-PLKPIIDTVVMS------------------NAVHFYVSQSDKGELVIGGGIDGYNSYAQRGNL-PTLEHV 315 (407)
T ss_pred ccceEEEec-CCCCCcCCeEEe------------------CCCceEEEEcCCceEEEecCCCCCCccCcCCCH-HHHHHH
Confidence 111111121 110000111110 01336778888887777754321 11 11122 222233
Q ss_pred HHHHhhcCCccccccccceEeecCCCCCCCCCCceeEeeccC--CCCC--CCCcHHHHHHHHhcHHHHHHHH
Q 014377 243 VARLKHLGIKVRSIEEDEHCVIPMGGPLPVLPQRVVGIGGTA--GMVH--PSTGYMVARTLAAAPIVANAIV 310 (426)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~liGdAa--~~~~--P~~G~G~~~a~~~a~~la~~i~ 310 (426)
.+.+..+-...... .. ...+.+.++..+|+.++||... +.+. =++|.|+.+|...|..+|+.|.
T Consensus 316 ~~~~~~~~P~l~~~-~~---~~~w~G~~~~t~D~~PiIg~~~~~gl~~a~G~~g~G~~~ap~~G~~la~li~ 383 (407)
T TIGR01373 316 LAAILEMFPILSRV-RM---LRSWGGIVDVTPDGSPIIGKTPLPNLYLNCGWGTGGFKATPASGTVFAHTLA 383 (407)
T ss_pred HHHHHHhCCCcCCC-Ce---EEEeccccccCCCCCceeCCCCCCCeEEEeccCCcchhhchHHHHHHHHHHh
Confidence 33333221111111 00 0113444555667788888652 2211 1456788888777777777765
No 70
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.59 E-value=9.3e-13 Score=126.30 Aligned_cols=66 Identities=15% Similarity=0.122 Sum_probs=54.7
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCC-cccccc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSR-CLVQYD 156 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s-~~r~~~ 156 (426)
+.++...+.+.|.+.+.+.|++++ +++|++++.+++.+.|.+.++ ++.||.||.|+|.++ .+++.+
T Consensus 140 g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~~~l~~~~ 207 (380)
T TIGR01377 140 GVLYAEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWTSKLLSPL 207 (380)
T ss_pred cEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcchHHHhhhc
Confidence 457889999999999988999999 889999998877788877665 799999999999864 454443
No 71
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.57 E-value=1.3e-14 Score=129.71 Aligned_cols=137 Identities=28% Similarity=0.341 Sum_probs=90.9
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCch----hhhhhccCCeEEEecCCCcc
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLL----DCLDTTWSGAVVHIDDNTKK 83 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~ 83 (426)
.++||+||||||||+++|+.|++.|++|+|+|+.+.++..-..|.. .+....+. +.++ .+.- . +.
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~--~~~~~~v~~~~~~~l~-~~gv-~--~~----- 92 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGM--LFNKIVVQEEADEILD-EFGI-R--YK----- 92 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCcc--ccccccchHHHHHHHH-HCCC-C--ce-----
Confidence 4689999999999999999999999999999998764321111110 00111110 0111 0000 0 00
Q ss_pred ccCCCccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCC-eE-EEEEc-----------CCcEEEcCEEEECCCCC
Q 014377 84 DLDRPYGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEES-KS-LLICN-----------DGVTIQAAVVLDATGFS 149 (426)
Q Consensus 84 ~~~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~-~~-~v~~~-----------~g~~i~a~~vV~AdG~~ 149 (426)
.....+..+++..+...|.+++.+.|++++ +++|+++..+++ .+ .+... +..+++|++||+|+|.+
T Consensus 93 ~~~~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~ 172 (257)
T PRK04176 93 EVEDGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHD 172 (257)
T ss_pred eecCcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCC
Confidence 001223457899999999999999999999 899999987554 33 22221 23579999999999999
Q ss_pred Cccccc
Q 014377 150 RCLVQY 155 (426)
Q Consensus 150 s~~r~~ 155 (426)
+.+.+.
T Consensus 173 a~v~~~ 178 (257)
T PRK04176 173 AEVVSV 178 (257)
T ss_pred cHHHHH
Confidence 987654
No 72
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.57 E-value=4.3e-13 Score=129.86 Aligned_cols=61 Identities=15% Similarity=0.229 Sum_probs=50.7
Q ss_pred ccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCC-----cEEEcCEEEECCCCCCc
Q 014377 91 RVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDG-----VTIQAAVVLDATGFSRC 151 (426)
Q Consensus 91 ~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g-----~~i~a~~vV~AdG~~s~ 151 (426)
.++...+...|.+.+.+.|++++ +++|++++.+++.+++.+.++ .+++||.||.|+|.++.
T Consensus 193 ~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~ 259 (410)
T PRK12409 193 TGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSR 259 (410)
T ss_pred ccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChH
Confidence 36777888999999999999999 899999998777776654433 37999999999999974
No 73
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.57 E-value=2.1e-13 Score=133.49 Aligned_cols=60 Identities=18% Similarity=0.206 Sum_probs=51.0
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRC 151 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~ 151 (426)
+.++..++...|.+.+.+.|++++ +++|++++. ++.+.|++.+| +++|+.||.|+|.++.
T Consensus 178 g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 178 ASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWMA 238 (460)
T ss_pred eEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccccc
Confidence 458999999999999999999999 899999975 44566777666 6999999999998864
No 74
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.55 E-value=4.2e-14 Score=126.04 Aligned_cols=137 Identities=26% Similarity=0.363 Sum_probs=91.2
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCch----hhhhhccCCeEEEecCCCcc
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLL----DCLDTTWSGAVVHIDDNTKK 83 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~ 83 (426)
.++||+||||||+|+++|+.|++.|++|+|+||++.++.. .|+.- ..+....+. +.+. .+. .. + .
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg-~~~gg-~~~~~~~~~~~~~~~l~-~~g-i~--~-----~ 88 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGG-SWGGG-MLFSKIVVEKPAHEILD-EFG-IR--Y-----E 88 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcc-ccCCC-cceecccccchHHHHHH-HCC-CC--e-----e
Confidence 4699999999999999999999999999999999765321 12110 001111110 1110 000 00 0 0
Q ss_pred ccCCCccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCC--eE-EEEEc-----------CCcEEEcCEEEECCCC
Q 014377 84 DLDRPYGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEES--KS-LLICN-----------DGVTIQAAVVLDATGF 148 (426)
Q Consensus 84 ~~~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~--~~-~v~~~-----------~g~~i~a~~vV~AdG~ 148 (426)
.....+...++..+.+.|.+++.+.|++++ +++|+++..+++ .+ .|.+. |..+++|++||+|+|.
T Consensus 89 ~~~~g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~ 168 (254)
T TIGR00292 89 DEGDGYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGH 168 (254)
T ss_pred eccCceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecC
Confidence 011223346889999999999999999999 999999987665 23 23332 2357999999999999
Q ss_pred CCccccc
Q 014377 149 SRCLVQY 155 (426)
Q Consensus 149 ~s~~r~~ 155 (426)
.+.+.+.
T Consensus 169 ~a~v~~~ 175 (254)
T TIGR00292 169 DAEIVAV 175 (254)
T ss_pred CchHHHH
Confidence 8876553
No 75
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.55 E-value=6.5e-14 Score=132.91 Aligned_cols=138 Identities=20% Similarity=0.267 Sum_probs=80.0
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCC------Ccccc--------------------hhHHHhhcCch
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWP------NNYGV--------------------WVDEFEAMDLL 63 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~------~~~g~--------------------~~~~l~~~~~~ 63 (426)
|||+||||||||+.+|+.|++.|.+|+|+||.+..+.. ..|.. ....+......
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 79999999999999999999999999999999876110 01111 11123333333
Q ss_pred hhhhhcc-CCeEEEecCCCccccCCCccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCe-EEEEEcCCcEEEcC
Q 014377 64 DCLDTTW-SGAVVHIDDNTKKDLDRPYGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESK-SLLICNDGVTIQAA 140 (426)
Q Consensus 64 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~-~~v~~~~g~~i~a~ 140 (426)
+.+..-- .+........ .+.. |. .-....+.+.|.+.+.+.|++++ +++|.+++.++++ +.|.++++.++.||
T Consensus 81 d~~~ff~~~Gv~~~~~~~-gr~f--P~-s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~ 156 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEED-GRVF--PK-SDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEAD 156 (409)
T ss_dssp HHHHHHHHTT--EEE-ST-TEEE--ET-T--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEES
T ss_pred HHHHHHHhcCCeEEEcCC-CEEC--CC-CCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCC
Confidence 3222110 1111111111 1111 11 12567888999999999999999 9999999988777 78888788899999
Q ss_pred EEEECCCCCCc
Q 014377 141 VVLDATGFSRC 151 (426)
Q Consensus 141 ~vV~AdG~~s~ 151 (426)
.||.|+|..|.
T Consensus 157 ~vILAtGG~S~ 167 (409)
T PF03486_consen 157 AVILATGGKSY 167 (409)
T ss_dssp EEEE----SSS
T ss_pred EEEEecCCCCc
Confidence 99999998774
No 76
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.55 E-value=1.7e-12 Score=126.07 Aligned_cols=60 Identities=20% Similarity=0.205 Sum_probs=50.3
Q ss_pred ccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEE-EEEcCCcEEEcCEEEECCCCCCc
Q 014377 91 RVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSL-LICNDGVTIQAAVVLDATGFSRC 151 (426)
Q Consensus 91 ~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~-v~~~~g~~i~a~~vV~AdG~~s~ 151 (426)
.++...+...|.+.+.+.|++++ +++|++++.+++++. |++. +.++.||.||.|+|.++.
T Consensus 197 ~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~-~~~~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 197 TGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTG-GGVITADAYVVALGSYST 258 (416)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeC-CcEEeCCEEEECCCcchH
Confidence 46788999999999988999999 899999988777654 5555 457999999999999874
No 77
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.54 E-value=1.7e-13 Score=134.07 Aligned_cols=143 Identities=22% Similarity=0.249 Sum_probs=96.5
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCC-CCC----CCc----ccchhHHHhhcCc--hhhhhhccCCeEE
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPK-LIW----PNN----YGVWVDEFEAMDL--LDCLDTTWSGAVV 75 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~-~~~----~~~----~g~~~~~l~~~~~--~~~~~~~~~~~~~ 75 (426)
+..|||+|||||+||+.+|+.+++.|.+|+|+|++.. ++. +.. .|.+.+.++.++- ....+...-...+
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ 81 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRM 81 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceee
Confidence 4569999999999999999999999999999999742 221 000 1223334444431 1111111101111
Q ss_pred EecCCCccccCCCccccCHHHHHHHHHHHHHh-CCcEEEEEEEEEEEEeCCeE-EEEEcCCcEEEcCEEEECCCCCC
Q 014377 76 HIDDNTKKDLDRPYGRVNRKLLKSKMLQKCIT-NGVKFHQAKVIKVIHEESKS-LLICNDGVTIQAAVVLDATGFSR 150 (426)
Q Consensus 76 ~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~-~gv~~~~~~v~~i~~~~~~~-~v~~~~g~~i~a~~vV~AdG~~s 150 (426)
....+......+.+.+|+..+...+.+.+.+ .|++++.++|+++..+++.+ .|.+.+|.++.|+.||+|+|.++
T Consensus 82 -ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 82 -LNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTFL 157 (618)
T ss_pred -cccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcch
Confidence 1111111222344578999999999999886 58998888899988776665 47888899999999999999765
No 78
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.54 E-value=6.9e-13 Score=127.52 Aligned_cols=196 Identities=16% Similarity=0.073 Sum_probs=106.6
Q ss_pred cccCHHHHHHHHHHHHHhCCc-EEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCcccc-ccCCCCCceeeE
Q 014377 90 GRVNRKLLKSKMLQKCITNGV-KFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRCLVQ-YDKPYNPGYQVA 166 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv-~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~~r~-~~~~~~~~~~~~ 166 (426)
+.++...+.+.|.+.+.+.|+ .+. ++.+..++.+.+.+.|.+.+|. +.|+.||.|+|.++...- ..+.........
T Consensus 151 ~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~~~l~~~~~~~~~~~~p~ 229 (387)
T COG0665 151 GHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAGELAATLGELPLPLRPV 229 (387)
T ss_pred CcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHHHHHHHhcCCCcCccccc
Confidence 357889999999999999884 455 7788888764245678888776 999999999999876321 111111111223
Q ss_pred EEEEEEeecCCCCCCceee-eecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeEEEecccCcC---CCCCCh-----HH
Q 014377 167 YGILAEVEEHPFDLDKMVF-MDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETSLVA---RPGVPM-----KD 237 (426)
Q Consensus 167 ~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~---~~~~~~-----~~ 237 (426)
.+..+.++..+........ .... ....-.|+.|..++++.++.+.... ...... .+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~y~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~ 294 (387)
T COG0665 230 RGQALTTEPPEGLLADGLAPVVLV---------------VDDGGGYIRPRGDGRLRVGGTDEEGGDDPSDPEREDLVIAE 294 (387)
T ss_pred cceEEEecCCCccccccccceEEE---------------ecCCceEEEEcCCCcEEEeecccccCCCCccccCcchhHHH
Confidence 4444444422111110000 0000 0023477788888887777664433 111111 13
Q ss_pred HHHHHHHHHhhcCCccccccccceEeecCCCCCCCC-CCceeEeeccCCCCC------CCCcHHHHHHHHhcHHHHHHHH
Q 014377 238 IQERMVARLKHLGIKVRSIEEDEHCVIPMGGPLPVL-PQRVVGIGGTAGMVH------PSTGYMVARTLAAAPIVANAIV 310 (426)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~v~liGdAa~~~~------P~~G~G~~~a~~~a~~la~~i~ 310 (426)
+.+.+.+.++.+ .+..... .+.+.++.. +++.+++|-+.. .+ -++|.|+..+-..|..+|+.|.
T Consensus 295 l~~~~~~~~P~l----~~~~~~~----~w~g~~~~t~pd~~P~iG~~~~-~~~l~~a~G~~~~G~~~~p~~g~~lA~li~ 365 (387)
T COG0665 295 LLRVARALLPGL----ADAGIEA----AWAGLRPPTTPDGLPVIGRAAP-LPNLYVATGHGGHGFTLAPALGRLLADLIL 365 (387)
T ss_pred HHHHHHHhCccc----cccccce----eeeccccCCCCCCCceeCCCCC-CCCEEEEecCCCcChhhccHHHHHHHHHHc
Confidence 444444444433 2111111 233445543 788888885221 11 1445577777766666666665
No 79
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.54 E-value=5.4e-14 Score=117.66 Aligned_cols=141 Identities=28% Similarity=0.329 Sum_probs=84.0
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCC
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDR 87 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (426)
.++||+||||||+|+++|+.|++.|++|++||++..++-..-+|.. .+.+.-+++..........+.+ .....
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~--lf~~iVVq~~a~~iL~elgi~y-----~~~~~ 88 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGM--LFNKIVVQEEADEILDELGIPY-----EEYGD 88 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CT--T---EEEETTTHHHHHHHT--------EE-SS
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccccccc--ccchhhhhhhHHHHHHhCCcee-----EEeCC
Confidence 4689999999999999999999999999999998765432222221 1111111110000000000101 11112
Q ss_pred CccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeC-CeEE-EEE------c-----CCcEEEcCEEEECCCCCCccc
Q 014377 88 PYGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEE-SKSL-LIC------N-----DGVTIQAAVVLDATGFSRCLV 153 (426)
Q Consensus 88 ~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~-~~~~-v~~------~-----~g~~i~a~~vV~AdG~~s~~r 153 (426)
.|...|...+...|..++.++|++++ ...|+++...+ +++. |.. . |--+++|++||+|+|..+.+.
T Consensus 89 g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v~ 168 (230)
T PF01946_consen 89 GYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEVV 168 (230)
T ss_dssp EEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSST
T ss_pred eEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHHH
Confidence 33457999999999999999999999 88999998766 5543 221 1 224899999999999988765
Q ss_pred cc
Q 014377 154 QY 155 (426)
Q Consensus 154 ~~ 155 (426)
+.
T Consensus 169 ~~ 170 (230)
T PF01946_consen 169 RV 170 (230)
T ss_dssp SH
T ss_pred HH
Confidence 53
No 80
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.53 E-value=9.2e-13 Score=126.65 Aligned_cols=122 Identities=9% Similarity=0.058 Sum_probs=79.9
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCc-cccccCCC-CCceeeE
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRC-LVQYDKPY-NPGYQVA 166 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~-~r~~~~~~-~~~~~~~ 166 (426)
+.++...+.+.|.+.+.+.|++++ +++|++++.+++++.|.+.++ ++.||.||.|+|.+|. +.+.++.. .......
T Consensus 144 g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~g~~~~~~v~p~ 222 (393)
T PRK11728 144 GIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMSDRLAKMAGLEPDFRIVPF 222 (393)
T ss_pred eEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcchHHHHHHhCCCCCCceEEe
Confidence 457899999999999999999999 889999988777777877766 7999999999999984 33333322 1222345
Q ss_pred EEEEEEeecCCCC-CCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeEEEecc
Q 014377 167 YGILAEVEEHPFD-LDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEET 225 (426)
Q Consensus 167 ~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~ 225 (426)
.|..+.++..... ....+ . ..+.... ...-+|..|..++++.++.+
T Consensus 223 rGq~~~~~~~~~~~~~~~v-~--~~p~~~~----------~~~g~~~~p~~~G~~~~G~~ 269 (393)
T PRK11728 223 RGEYYRLAPEKNQLVNHLI-Y--PVPDPAF----------PFLGVHLTRMIDGSVTVGPN 269 (393)
T ss_pred eeEEEEeccccccccCCce-e--cCCCCCC----------CcceEEeecCCCCCEEECCC
Confidence 6766666532111 11111 1 1111000 01125778999999888863
No 81
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.51 E-value=1.4e-11 Score=124.24 Aligned_cols=161 Identities=15% Similarity=0.150 Sum_probs=94.6
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeC--CeE-EEEE---cCCc--EEEcCEEEECCCCCCc-cccccCC-
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEE--SKS-LLIC---NDGV--TIQAAVVLDATGFSRC-LVQYDKP- 158 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~--~~~-~v~~---~~g~--~i~a~~vV~AdG~~s~-~r~~~~~- 158 (426)
++++...+...|.+.+.+.|++++ .++|+++..++ +.+ .|+. .+++ ++.||.||.|+|.+|. +++..+.
T Consensus 227 g~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~g~~ 306 (627)
T PLN02464 227 GQMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMADGK 306 (627)
T ss_pred cEEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhccCc
Confidence 358999999999999999999999 88999998763 433 3343 2333 6899999999999985 4443332
Q ss_pred CCCceeeEEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeEEEecccCc----CCCCCC
Q 014377 159 YNPGYQVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETSLV----ARPGVP 234 (426)
Q Consensus 159 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~----~~~~~~ 234 (426)
.........|..+.++....+....+++. ... ....++++|. .+.+.++.|... ..+..+
T Consensus 307 ~~~~I~p~kG~hlvl~~~~~~~~~~~i~~--~~~-------------dgr~~~~~P~-~g~~liGtTd~~~~~~~~~~~t 370 (627)
T PLN02464 307 AKPMICPSSGVHIVLPDYYSPEGMGLIVP--KTK-------------DGRVVFMLPW-LGRTVAGTTDSKTPITMLPEPH 370 (627)
T ss_pred CCCceEeeeeEEEecccccCCCCceEEec--CCC-------------CCCEEEEEec-CCcEEEecCCCCCCCCCCCCCC
Confidence 22224557777776542111111111111 000 0256889999 666777866432 123333
Q ss_pred hHHHHHH---HHHHHhhcCCccccccccceEeecCC
Q 014377 235 MKDIQER---MVARLKHLGIKVRSIEEDEHCVIPMG 267 (426)
Q Consensus 235 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~ 267 (426)
.+++... ...+++ ..+...++...-.+..|+.
T Consensus 371 ~~ei~~Ll~~a~~~~~-~~l~~~~v~~~waG~RPl~ 405 (627)
T PLN02464 371 EDEIQFILDAISDYLN-VKVRRSDVLSAWSGIRPLA 405 (627)
T ss_pred HHHHHHHHHHHHHhhC-CCCChhhEEEEEEeEEeec
Confidence 3444333 333442 1233345555567777865
No 82
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.50 E-value=1.5e-10 Score=111.29 Aligned_cols=206 Identities=16% Similarity=0.163 Sum_probs=124.6
Q ss_pred ccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCC-----cEEEcCEEEECCCCCCcc-ccccCCCC---
Q 014377 91 RVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDG-----VTIQAAVVLDATGFSRCL-VQYDKPYN--- 160 (426)
Q Consensus 91 ~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g-----~~i~a~~vV~AdG~~s~~-r~~~~~~~--- 160 (426)
.++-.+|.-.....|.+.|.+++ .++|+++..+++.+.|...|. .+++|+.||.|+|+++.- ++......
T Consensus 160 ~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~~~~~~~~ 239 (532)
T COG0578 160 VVDDARLVAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMAGLEQSPH 239 (532)
T ss_pred eechHHHHHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhhcccCCCC
Confidence 47888999999999999999999 899999999888555665543 368999999999999863 33332211
Q ss_pred CceeeEEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeEEEecccCc-----CCCCCCh
Q 014377 161 PGYQVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETSLV-----ARPGVPM 235 (426)
Q Consensus 161 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~-----~~~~~~~ 235 (426)
.......|..+-++. .++...+++.....+ .....++|..+.. .++.|... +++..+.
T Consensus 240 ~~vr~skGsHlVv~~-~~~~~~a~~~~~~~d---------------~r~~f~iP~~~~~-liGTTD~~~~~~~~~~~~~~ 302 (532)
T COG0578 240 IGVRPSKGSHLVVDK-KFPINQAVINRCRKD---------------GRIVFAIPYEGKT-LIGTTDTDYDGDPEDPRITE 302 (532)
T ss_pred ccceeccceEEEecc-cCCCCceEEeecCCC---------------CceEEEecCCCCE-EeeccccccCCCcccCCCCH
Confidence 133557788887775 455566665543321 2567888988877 56665432 2344555
Q ss_pred HHHHHHHHHHH--hhcCCccccccccceEeecCCCCC---CC-CCCceeEeecc--CCCCCCCCcHHHHHHHHhcHHHHH
Q 014377 236 KDIQERMVARL--KHLGIKVRSIEEDEHCVIPMGGPL---PV-LPQRVVGIGGT--AGMVHPSTGYMVARTLAAAPIVAN 307 (426)
Q Consensus 236 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~---~~-~~~~v~liGdA--a~~~~P~~G~G~~~a~~~a~~la~ 307 (426)
+++.-.+.+.- ....+...++...-.++.|+...- +. ..-...+.-++ +++++-++|.=...- .-|..+.+
T Consensus 303 eEidyll~~~~~~~~~~l~~~dI~~syaGVRPL~~~~~~~~~~isR~~~l~~~~~~~glltv~GGKlTTyR-~maE~a~d 381 (532)
T COG0578 303 EEIDYLLDAVNRYLAPPLTREDILSTYAGVRPLVDDGDDDTSAISRDHVLFDHAELAGLLTVAGGKLTTYR-KMAEDALD 381 (532)
T ss_pred HHHHHHHHHHHhhhhccCChhheeeeeeeeeeccCCCCCchhhccCceEEEecCCCCCeEEEecchhHHhH-HHHHHHHH
Confidence 55544333221 112244455666667888875421 11 12334445455 666666666522211 11334445
Q ss_pred HHHHhcC
Q 014377 308 AIVRSLS 314 (426)
Q Consensus 308 ~i~~~l~ 314 (426)
.+.+.+.
T Consensus 382 ~v~~~lg 388 (532)
T COG0578 382 AVCEKLG 388 (532)
T ss_pred HHHHhcC
Confidence 5555553
No 83
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.49 E-value=2.4e-13 Score=112.85 Aligned_cols=138 Identities=25% Similarity=0.392 Sum_probs=91.1
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhH--HHhhcCchhhhhhccCCeEEEecCCCcccc
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVD--EFEAMDLLDCLDTTWSGAVVHIDDNTKKDL 85 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (426)
...||+||||||+||++|++|+++|++|+|+||+-.++- |.|.- .+...-+.+..........+.. ...
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GG----G~w~GGmlf~~iVv~~~a~~iL~e~gI~y-----e~~ 99 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGG----GIWGGGMLFNKIVVREEADEILDEFGIRY-----EEE 99 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCC----cccccccccceeeecchHHHHHHHhCCcc-----eec
Confidence 357999999999999999999999999999999876532 23321 1111111110000000000000 111
Q ss_pred CCCccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCC-eEE-EEE-----------cCCcEEEcCEEEECCCCCCc
Q 014377 86 DRPYGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEES-KSL-LIC-----------NDGVTIQAAVVLDATGFSRC 151 (426)
Q Consensus 86 ~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~-~~~-v~~-----------~~g~~i~a~~vV~AdG~~s~ 151 (426)
...|...|...+...|..++.+.|++++ ...|+++...++ +++ |.+ -|--+++|++||+|+|....
T Consensus 100 e~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~ 179 (262)
T COG1635 100 EDGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAE 179 (262)
T ss_pred CCceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchH
Confidence 1234457999999999999999999999 889999987665 442 221 13357999999999998765
Q ss_pred ccc
Q 014377 152 LVQ 154 (426)
Q Consensus 152 ~r~ 154 (426)
+-+
T Consensus 180 v~~ 182 (262)
T COG1635 180 VVS 182 (262)
T ss_pred HHH
Confidence 543
No 84
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.48 E-value=1.3e-11 Score=123.03 Aligned_cols=202 Identities=18% Similarity=0.192 Sum_probs=108.7
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEE-EEEc---CC--cEEEcCEEEECCCCCCcc-ccccCCCCC
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSL-LICN---DG--VTIQAAVVLDATGFSRCL-VQYDKPYNP 161 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~-v~~~---~g--~~i~a~~vV~AdG~~s~~-r~~~~~~~~ 161 (426)
+.++...|...+.+.+.+.|++++ +++|+++..++++++ |++. ++ .+++|+.||.|+|.++.- .+..+...
T Consensus 144 g~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g~~~- 222 (546)
T PRK11101 144 GTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYADLRI- 222 (546)
T ss_pred cEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhcCCCC-
Confidence 568999999999999999999999 899999988776543 4432 23 479999999999999843 22222211
Q ss_pred ceeeEEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeEEEecccCcC------CCCCCh
Q 014377 162 GYQVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETSLVA------RPGVPM 235 (426)
Q Consensus 162 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~------~~~~~~ 235 (426)
......|..+.++. ... ..++.....+. .+. ++.| .++.++++.|.... ....+.
T Consensus 223 ~i~p~kG~~lv~~~-~~~--~~vi~~~~~~~--------------~~~-~~vp-~~~~~liGtT~~~~~~~~~~~~~~t~ 283 (546)
T PRK11101 223 RMFPAKGSLLIMDH-RIN--NHVINRCRKPA--------------DAD-ILVP-GDTISLIGTTSTRIDYDQIDDNRVTA 283 (546)
T ss_pred ceeecceEEEEECC-ccC--ceeEeccCCCC--------------CCC-EEEe-cCCEEEEeeCCCCccCCCcCCCCCCH
Confidence 12334555555542 111 11111100000 011 2446 34556777664321 123445
Q ss_pred HHHHHHHHHHHhhcC--CccccccccceEeecCCCCC--CC---CCCceeEeecc-----CCCCCCCCcHHHHHHHHhcH
Q 014377 236 KDIQERMVARLKHLG--IKVRSIEEDEHCVIPMGGPL--PV---LPQRVVGIGGT-----AGMVHPSTGYMVARTLAAAP 303 (426)
Q Consensus 236 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~--~~---~~~~v~liGdA-----a~~~~P~~G~G~~~a~~~a~ 303 (426)
+++...+. ....+- +...++++.-.++.|+.... +. ...+.+++++. .++++-.+|. +...-.-|.
T Consensus 284 ~~i~~Ll~-~~~~l~P~l~~~~i~~~~aGvRPl~~~~~~~~~~~~sR~~~ii~~~~~~g~~gli~i~GGk-ltt~r~~Ae 361 (546)
T PRK11101 284 EEVDILLR-EGEKLAPVMAKTRILRAYAGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGK-LMTYRLMAE 361 (546)
T ss_pred HHHHHHHH-HHHHhCCCCCccCEEEEEEEeccCCCCCCCCcccccCCCeEEeecccccCCCCeEEEECCh-HHHHHHHHH
Confidence 54443333 233322 23344555567777763211 11 12246677743 4565555544 333333355
Q ss_pred HHHHHHHHhc
Q 014377 304 IVANAIVRSL 313 (426)
Q Consensus 304 ~la~~i~~~l 313 (426)
.+++.+.+.+
T Consensus 362 ~v~d~v~~~l 371 (546)
T PRK11101 362 WATDAVCRKL 371 (546)
T ss_pred HHHHHHHHhc
Confidence 6666666554
No 85
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.42 E-value=5.2e-12 Score=118.78 Aligned_cols=146 Identities=21% Similarity=0.332 Sum_probs=96.1
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCC--CcEEEEcCCCCCCCCCc--------ccchh------HH------------Hh
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAG--LSVCSIDPSPKLIWPNN--------YGVWV------DE------------FE 58 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G--~~V~liE~~~~~~~~~~--------~g~~~------~~------------l~ 58 (426)
++++||+|||||+.|+++|+.|++.+ ++|+|+||...+....+ .|... .. .+
T Consensus 1 ~~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~k 80 (429)
T COG0579 1 MMDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICK 80 (429)
T ss_pred CCceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHH
Confidence 35799999999999999999999998 99999999877632211 11100 00 11
Q ss_pred hcCch----------------hhhhhcc----C-CeE-EEecCCCc--------------cccCCCccccCHHHHHHHHH
Q 014377 59 AMDLL----------------DCLDTTW----S-GAV-VHIDDNTK--------------KDLDRPYGRVNRKLLKSKML 102 (426)
Q Consensus 59 ~~~~~----------------~~~~~~~----~-~~~-~~~~~~~~--------------~~~~~~~~~v~r~~l~~~L~ 102 (426)
++++. +.+...+ . +.. +..-+... .......+.|+...+...|.
T Consensus 81 q~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~ 160 (429)
T COG0579 81 QLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALA 160 (429)
T ss_pred HhCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHH
Confidence 11100 0000000 0 000 11100000 00012234589999999999
Q ss_pred HHHHhCCcEEE-EEEEEEEEEeCC-eEEEEEcCCcE-EEcCEEEECCCCCCcc
Q 014377 103 QKCITNGVKFH-QAKVIKVIHEES-KSLLICNDGVT-IQAAVVLDATGFSRCL 152 (426)
Q Consensus 103 ~~~~~~gv~~~-~~~v~~i~~~~~-~~~v~~~~g~~-i~a~~vV~AdG~~s~~ 152 (426)
+.+++.|++++ +++|++++..++ ...+.+.+|++ ++|+.||.|.|..|.-
T Consensus 161 e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~ 213 (429)
T COG0579 161 EEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADP 213 (429)
T ss_pred HHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHH
Confidence 99999999999 999999999887 56677888866 9999999999988853
No 86
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.40 E-value=1.2e-12 Score=114.02 Aligned_cols=132 Identities=22% Similarity=0.303 Sum_probs=79.6
Q ss_pred EEECchHHHHHHHHHHHHCCCc-EEEEcCCCCCCCCCcccchhHHHhhcCch--hhhhhccCCeEEEecCCCcc---ccC
Q 014377 13 AVVGGGPAGLAVAQQVSEAGLS-VCSIDPSPKLIWPNNYGVWVDEFEAMDLL--DCLDTTWSGAVVHIDDNTKK---DLD 86 (426)
Q Consensus 13 iIvGgG~aGl~~A~~La~~G~~-V~liE~~~~~~~~~~~g~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~ 86 (426)
+||||||+|+++|..|.+.|++ |+|||+++.++ |.|...-....+. .... ...... .+...... ...
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~G-----g~w~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~ 73 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPG-----GVWRRYYSYTRLHSPSFFS-SDFGLP-DFESFSFDDSPEWR 73 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSST-----THHHCH-TTTT-BSSSCCT-GGSS---CCCHSCHHHHHHHH
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCC-----CeeEEeCCCCccccCcccc-ccccCC-cccccccccCCCCC
Confidence 7999999999999999999999 99999986543 3343211110010 0000 000000 00000000 000
Q ss_pred CCccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCc
Q 014377 87 RPYGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRC 151 (426)
Q Consensus 87 ~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~ 151 (426)
.+.....+..+.+.|.+.+++.++++. +++|+++..+++++.|++.++++++|+.||.|+|..+.
T Consensus 74 ~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 74 WPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSH 139 (203)
T ss_dssp HSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCS
T ss_pred CCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCC
Confidence 012236788889999999988999988 99999999999899999999989999999999997654
No 87
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.39 E-value=6.8e-11 Score=104.63 Aligned_cols=145 Identities=18% Similarity=0.218 Sum_probs=95.8
Q ss_pred CCCCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCc-----------c-------------cchhHH----
Q 014377 5 SKGLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNN-----------Y-------------GVWVDE---- 56 (426)
Q Consensus 5 ~~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~-----------~-------------g~~~~~---- 56 (426)
+|...+||+|||||+-|+++|+.|+++|.+++++|+.+.+..... + ..|...
T Consensus 3 ~~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~ 82 (399)
T KOG2820|consen 3 EMVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEES 82 (399)
T ss_pred ccccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhh
Confidence 355679999999999999999999999999999999876611100 0 001000
Q ss_pred ---------------------------HhhcCch------hhhhhccCCeEEEecCCCccccCCCccccCHHHHHHHHHH
Q 014377 57 ---------------------------FEAMDLL------DCLDTTWSGAVVHIDDNTKKDLDRPYGRVNRKLLKSKMLQ 103 (426)
Q Consensus 57 ---------------------------l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~ 103 (426)
++.-++. +.+...+|+ .+.+++......+..-+.++..+-.+.|..
T Consensus 83 g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~-~~~l~d~~~G~~n~~gGvi~a~kslk~~~~ 161 (399)
T KOG2820|consen 83 GVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPS-NIPLPDGWQGVVNESGGVINAAKSLKALQD 161 (399)
T ss_pred ceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCC-CccCCcchhhcccccccEeeHHHHHHHHHH
Confidence 0000000 111112222 112222221222233356788999999999
Q ss_pred HHHhCCcEEE-EEEEEEEEE---eCCeEEEEEcCCcEEEcCEEEECCCCCC
Q 014377 104 KCITNGVKFH-QAKVIKVIH---EESKSLLICNDGVTIQAAVVLDATGFSR 150 (426)
Q Consensus 104 ~~~~~gv~~~-~~~v~~i~~---~~~~~~v~~~~g~~i~a~~vV~AdG~~s 150 (426)
.+.+.|+.++ +..|..++. ++..+.|.+.+|..+.|+-+|.+.|++-
T Consensus 162 ~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi 212 (399)
T KOG2820|consen 162 KARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWI 212 (399)
T ss_pred HHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHH
Confidence 9999999999 777777663 3456889999999999999999999873
No 88
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=99.39 E-value=1.7e-11 Score=107.63 Aligned_cols=157 Identities=17% Similarity=0.172 Sum_probs=95.7
Q ss_pred cCEEEECCCCCCccccccCCC-CCceeeEEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCC
Q 014377 139 AAVVLDATGFSRCLVQYDKPY-NPGYQVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSS 217 (426)
Q Consensus 139 a~~vV~AdG~~s~~r~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 217 (426)
|.++|.|||..|.+|+.+... ......++|+.+.-...+.+...-++.. . ..|-.+|.+-..+
T Consensus 2 A~LtivaDG~~S~fRk~l~~~~~~v~S~fvGl~l~~~~lp~~~~ghvil~--~--------------~~pil~YqI~~~e 65 (276)
T PF08491_consen 2 APLTIVADGCFSKFRKELSDNKPQVRSYFVGLILKDAPLPKPNHGHVILG--K--------------PGPILLYQISSNE 65 (276)
T ss_pred CCEEEEecCCchHHHHhhcCCCCceeeeEEEEEEcCCCCCCCCceEEEEc--C--------------CCcEEEEEcCCCc
Confidence 789999999999999987543 3344668888776433333332222221 0 0134455555555
Q ss_pred CeEEEecccCcCCCCCChHHHHHHHHHHHhh-cC----Ccccc-ccccceEeecCCCCCC--CCCCceeEeeccCCCCCC
Q 014377 218 NRIFLEETSLVARPGVPMKDIQERMVARLKH-LG----IKVRS-IEEDEHCVIPMGGPLP--VLPQRVVGIGGTAGMVHP 289 (426)
Q Consensus 218 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~-~~~~~~~~~p~~~~~~--~~~~~v~liGdAa~~~~P 289 (426)
.|+++..... .-|..+..++++.+.+.... +. ....+ +........|.....+ ...++++++|||+++.||
T Consensus 66 tR~Lvdvp~~-k~P~~~~g~l~~yl~~~v~P~LP~~lr~~f~~al~~~rirsMPn~~lp~~~~~~~G~vllGDA~nmrHP 144 (276)
T PF08491_consen 66 TRVLVDVPGP-KLPSVSNGELKEYLREVVAPQLPEELRPSFEKALEDGRIRSMPNSFLPASPNWKPGVVLLGDAANMRHP 144 (276)
T ss_pred eEEEEEeCCC-ccCCccchHHHHHHHHHHHhhchHHHHHHHHHHhccCCcceecccccCCCCCCCCCEEEEehhhcCcCC
Confidence 6666655422 12333445666655543321 11 11111 1222334445433222 255899999999999999
Q ss_pred CCcHHHHHHHHhcHHHHHHHHHh
Q 014377 290 STGYMVARTLAAAPIVANAIVRS 312 (426)
Q Consensus 290 ~~G~G~~~a~~~a~~la~~i~~~ 312 (426)
.+|+||+.|+.|+..|++.|...
T Consensus 145 LTGgGMTVAl~Dv~lL~~lL~~~ 167 (276)
T PF08491_consen 145 LTGGGMTVALNDVVLLRDLLSPI 167 (276)
T ss_pred ccccchhhHHHHHHHHHHHHhhh
Confidence 99999999999999999999865
No 89
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.35 E-value=2.4e-10 Score=108.94 Aligned_cols=57 Identities=21% Similarity=0.218 Sum_probs=46.7
Q ss_pred cccCHHHHHHHHHHHHHhC-CcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCc
Q 014377 90 GRVNRKLLKSKMLQKCITN-GVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRC 151 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~-gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~ 151 (426)
+.++...+...|.+.+.+. |++++ +++|++++.. .|++.+| +++||.||.|+|.++.
T Consensus 140 g~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~----~v~t~~g-~i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 140 LRVEPREAIPALAAYLAEQHGVEFHWNTAVTSVETG----TVRTSRG-DVHADQVFVCPGADFE 198 (365)
T ss_pred eeECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEecC----eEEeCCC-cEEeCEEEECCCCChh
Confidence 3578999999999988774 99999 8899998642 5667666 4789999999999864
No 90
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.34 E-value=2.7e-11 Score=118.54 Aligned_cols=140 Identities=20% Similarity=0.254 Sum_probs=95.7
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCC-CCC--------cccchhHHHhhcC--chhhhhhccCCeEEEec
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLI-WPN--------NYGVWVDEFEAMD--LLDCLDTTWSGAVVHID 78 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~-~~~--------~~g~~~~~l~~~~--~~~~~~~~~~~~~~~~~ 78 (426)
|||+|||||+||+.+|..+++.|.+|+|+|+++... ... ..|.|.+.++.+| +....++..-.......
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~ 80 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNS 80 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheeccc
Confidence 699999999999999999999999999999875321 110 1233444555543 22222222111111111
Q ss_pred CCCccccCCCccccCHHHHHHHHHHHHHhC-CcEEEEEEEEEEEEe-CC-eEEEEEcCCcEEEcCEEEECCCCCC
Q 014377 79 DNTKKDLDRPYGRVNRKLLKSKMLQKCITN-GVKFHQAKVIKVIHE-ES-KSLLICNDGVTIQAAVVLDATGFSR 150 (426)
Q Consensus 79 ~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~-gv~~~~~~v~~i~~~-~~-~~~v~~~~g~~i~a~~vV~AdG~~s 150 (426)
+. ......+.+.+|+..+...+.+.+.+. |++++..+|+++..+ ++ ...|.+.+|..+.|+.||+|+|.+.
T Consensus 81 sk-gpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 81 SK-GPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred CC-CCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 11 112233446799999999999999884 888887788888765 33 4567888888999999999999986
No 91
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.34 E-value=1.9e-11 Score=113.71 Aligned_cols=136 Identities=24% Similarity=0.286 Sum_probs=86.9
Q ss_pred cEEEECchHHHHHHHHHHHHCCCcEEEE-cCCCCCCCC---Cccc-----chhHHHhhcCchhhhhhccCCeEE--Eec-
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAGLSVCSI-DPSPKLIWP---NNYG-----VWVDEFEAMDLLDCLDTTWSGAVV--HID- 78 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G~~V~li-E~~~~~~~~---~~~g-----~~~~~l~~~~~~~~~~~~~~~~~~--~~~- 78 (426)
||+|||||.||+.+|+++|+.|.+|+|+ ++....... ...+ ....++..++ ..+........+ ...
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalg--g~m~~~aD~~~i~~~~lN 78 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALG--GLMGRAADETGIHFRMLN 78 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT---SHHHHHHHHEEEEEEES
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhh--hHHHHHHhHhhhhhhccc
Confidence 8999999999999999999999999999 333222111 1111 1223344444 111111111122 221
Q ss_pred CCCccccCCCccccCHHHHHHHHHHHHHh-CCcEEEEEEEEEEEEeCCeE-EEEEcCCcEEEcCEEEECCCC
Q 014377 79 DNTKKDLDRPYGRVNRKLLKSKMLQKCIT-NGVKFHQAKVIKVIHEESKS-LLICNDGVTIQAAVVLDATGF 148 (426)
Q Consensus 79 ~~~~~~~~~~~~~v~r~~l~~~L~~~~~~-~gv~~~~~~v~~i~~~~~~~-~v~~~~g~~i~a~~vV~AdG~ 148 (426)
..+......+...+||..+.+.+.+.+.+ ++++++.++|+++..+++.+ .|.+.+|.++.||.||+|+|.
T Consensus 79 ~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 79 RSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp TTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred ccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 11222222233469999999999999988 88998888999999887765 688999999999999999998
No 92
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=4.8e-11 Score=108.75 Aligned_cols=117 Identities=26% Similarity=0.294 Sum_probs=86.2
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCc-EEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccC
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLS-VCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLD 86 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~-V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
..+||+||||||||+++|.++++++++ ++|+|+....+++..+. ....||+.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~--------------~venypg~------------- 54 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTT--------------DVENYPGF------------- 54 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccce--------------eecCCCCC-------------
Confidence 569999999999999999999999999 77777654322211110 00111110
Q ss_pred CCccccCHHHHHHHHHHHHHhCCcEEEEEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCcccc
Q 014377 87 RPYGRVNRKLLKSKMLQKCITNGVKFHQAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRCLVQ 154 (426)
Q Consensus 87 ~~~~~v~r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~~r~ 154 (426)
+ +.+.-..|.+.+.+++...|+++....|.+++..++.+.|++.++. ++||.||.|+|....-.+
T Consensus 55 -~-~~~~g~~L~~~~~~~a~~~~~~~~~~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~~ 119 (305)
T COG0492 55 -P-GGILGPELMEQMKEQAEKFGVEIVEDEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKLG 119 (305)
T ss_pred -c-cCCchHHHHHHHHHHHhhcCeEEEEEEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCCC
Confidence 1 1256677888899999889999888888888876667888888887 999999999999876443
No 93
>PRK07233 hypothetical protein; Provisional
Probab=99.30 E-value=1.2e-09 Score=106.68 Aligned_cols=55 Identities=13% Similarity=0.068 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCC
Q 014377 96 LLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSR 150 (426)
Q Consensus 96 ~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s 150 (426)
.+.+.|.+.+.+.|++++ +++|++++.+++++.+...++++++||.||.|.+...
T Consensus 199 ~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~~ 254 (434)
T PRK07233 199 TLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPPI 254 (434)
T ss_pred HHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHHH
Confidence 456777777877888998 9999999988777766667778999999999998653
No 94
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.29 E-value=8.9e-11 Score=108.71 Aligned_cols=113 Identities=27% Similarity=0.326 Sum_probs=82.9
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
|||+|||||+||+++|..|++.|.+|+|||+.+.. |.+... ..+ +.+++ . +
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~g------g~~~~~-------~~~-~~~~~-------~-------~- 51 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPG------GQLTTT-------TEV-ENYPG-------F-------P- 51 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCC------cceeec-------ccc-cccCC-------C-------C-
Confidence 69999999999999999999999999999987521 111000 000 00010 0 0
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEEEEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFHQAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRC 151 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~ 151 (426)
..+....+...+.+.+.+.|++++.++|++++.+++.+.|.+.++.++++|.||.|+|....
T Consensus 52 ~~~~~~~~~~~l~~~~~~~gv~~~~~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~ 113 (300)
T TIGR01292 52 EGISGPELMEKMKEQAVKFGAEIIYEEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASAR 113 (300)
T ss_pred CCCChHHHHHHHHHHHHHcCCeEEEEEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcc
Confidence 01334567778888888889998778899998887778888888889999999999998654
No 95
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.29 E-value=4.2e-11 Score=116.32 Aligned_cols=141 Identities=16% Similarity=0.182 Sum_probs=90.1
Q ss_pred CCCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHH----HhhcCch-----------hhhhhcc
Q 014377 6 KGLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDE----FEAMDLL-----------DCLDTTW 70 (426)
Q Consensus 6 ~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~----l~~~~~~-----------~~~~~~~ 70 (426)
+....+|+||||||+|+++|..|.+.|++|+|+|+.+..+ |.|.-. -..+++. +.+....
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vG-----G~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~ 81 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVG-----GLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNL 81 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCc-----ceeecCCCcCCCccccCCCCcccchhhhhhhhccC
Confidence 3456899999999999999999999999999999987653 333110 0001110 0000011
Q ss_pred CCeEEEecCCCcc-c---c-CCCccccCHHHHHHHHHHHHHhCCcE--EE-EEEEEEEEEeCCeEEEEEcCC--c--EEE
Q 014377 71 SGAVVHIDDNTKK-D---L-DRPYGRVNRKLLKSKMLQKCITNGVK--FH-QAKVIKVIHEESKSLLICNDG--V--TIQ 138 (426)
Q Consensus 71 ~~~~~~~~~~~~~-~---~-~~~~~~v~r~~l~~~L~~~~~~~gv~--~~-~~~v~~i~~~~~~~~v~~~~g--~--~i~ 138 (426)
+.....+.+.... . . ...-....+..+.+.|.+.+...|+. +. +++|++++..+++|.|++.++ . +..
T Consensus 82 p~~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~ 161 (461)
T PLN02172 82 PRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEI 161 (461)
T ss_pred CHhhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEE
Confidence 1111111111000 0 0 00111346788999999999888877 66 899999998888888887643 2 457
Q ss_pred cCEEEECCCCCCc
Q 014377 139 AAVVLDATGFSRC 151 (426)
Q Consensus 139 a~~vV~AdG~~s~ 151 (426)
+|.||.|+|..+.
T Consensus 162 ~d~VIvAtG~~~~ 174 (461)
T PLN02172 162 FDAVVVCNGHYTE 174 (461)
T ss_pred cCEEEEeccCCCC
Confidence 9999999997653
No 96
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.24 E-value=4.8e-12 Score=122.50 Aligned_cols=138 Identities=24% Similarity=0.245 Sum_probs=33.0
Q ss_pred cEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccch--hHH-----HhhcCchhhhhhccCC-eEEEecCCCc
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVW--VDE-----FEAMDLLDCLDTTWSG-AVVHIDDNTK 82 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~--~~~-----l~~~~~~~~~~~~~~~-~~~~~~~~~~ 82 (426)
|||||||||+|+++|+.+++.|.+|+|||+.+..+-..+.+.. ... ...-++...+...... ........
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~-- 78 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDR-- 78 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccc--
Confidence 8999999999999999999999999999999876432222110 000 0001111111111110 00000000
Q ss_pred cccCCCccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeE-EEEEcC---CcEEEcCEEEECCCCCCc
Q 014377 83 KDLDRPYGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKS-LLICND---GVTIQAAVVLDATGFSRC 151 (426)
Q Consensus 83 ~~~~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~-~v~~~~---g~~i~a~~vV~AdG~~s~ 151 (426)
...... ..+++..+...|.+.+.+.|++++ ++.|.++..+++++ .|.+.+ ..+++|+++|||+|-...
T Consensus 79 ~~~~~~-~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~g~l 151 (428)
T PF12831_consen 79 YGWVSN-VPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGDGDL 151 (428)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 000000 246777888888888888999999 99999999887654 344433 368999999999996443
No 97
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.22 E-value=3e-10 Score=112.84 Aligned_cols=114 Identities=22% Similarity=0.249 Sum_probs=86.3
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccC
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLD 86 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
...+||+||||||||+++|..|++.|++|+|+|+... |.+.+ ..++ +. ...
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~G-------G~~~~---~~~~--------~~-----------~~~ 259 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFG-------GQVLD---TMGI--------EN-----------FIS 259 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC-------Ceeec---cCcc--------cc-----------cCC
Confidence 4579999999999999999999999999999976411 11110 0000 00 000
Q ss_pred CCccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCc
Q 014377 87 RPYGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRC 151 (426)
Q Consensus 87 ~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~ 151 (426)
.+ ......+.+.|.+++.+.|++++ +++|+++...++.+.|.+.+|.++.+|.||.|+|..+.
T Consensus 260 ~~--~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r 323 (517)
T PRK15317 260 VP--ETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWR 323 (517)
T ss_pred CC--CCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcC
Confidence 01 24566788888998888999998 89999998877788888888889999999999999764
No 98
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.21 E-value=4.4e-10 Score=112.43 Aligned_cols=115 Identities=28% Similarity=0.309 Sum_probs=81.8
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccC
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLD 86 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
...|||+||||||||+++|..|+++|++|+|||+.... |.+... ..+ ..+++
T Consensus 2 ~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~G------G~~~~~-------~~i-~~~pg-------------- 53 (555)
T TIGR03143 2 EEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFG------GQITIT-------SEV-VNYPG-------------- 53 (555)
T ss_pred CCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC------ceEEec-------ccc-ccCCC--------------
Confidence 45699999999999999999999999999999986421 111000 000 00010
Q ss_pred CCccccCHHHHHHHHHHHHHhCCcEEEEEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCcc
Q 014377 87 RPYGRVNRKLLKSKMLQKCITNGVKFHQAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 87 ~~~~~v~r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~~ 152 (426)
...+....+.+.+.+.+.+.|++++.++|+++..+++.+.|.+.++ ++.++.||.|+|+++..
T Consensus 54 --~~~~~~~~l~~~l~~~~~~~gv~~~~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~ 116 (555)
T TIGR03143 54 --ILNTTGPELMQEMRQQAQDFGVKFLQAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRK 116 (555)
T ss_pred --CcCCCHHHHHHHHHHHHHHcCCEEeccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCC
Confidence 0123455677778888888899988888988887666667777655 68999999999997654
No 99
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.18 E-value=9.6e-11 Score=114.27 Aligned_cols=61 Identities=16% Similarity=0.226 Sum_probs=52.3
Q ss_pred cccCHHHHHHHHHHHHHh----CC--cEEE-EEEEEEEEEe-CCeEEEEEcCCcEEEcCEEEECCCCCCc
Q 014377 90 GRVNRKLLKSKMLQKCIT----NG--VKFH-QAKVIKVIHE-ESKSLLICNDGVTIQAAVVLDATGFSRC 151 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~----~g--v~~~-~~~v~~i~~~-~~~~~v~~~~g~~i~a~~vV~AdG~~s~ 151 (426)
+.+|...+.+.|.+.+.+ .| ++++ +++|++++.+ ++.+.|++.+| +++||.||.|.|.+|.
T Consensus 206 ~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 206 TTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSL 274 (497)
T ss_pred EEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHH
Confidence 468999999999999988 77 7788 9999999987 45577888777 6999999999999985
No 100
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.18 E-value=4.3e-10 Score=108.84 Aligned_cols=151 Identities=19% Similarity=0.259 Sum_probs=85.0
Q ss_pred CCCCcCcEEEECchHHHHHHHHHHHHCCCc-EEEEcCCCCCCCCCcccchhHH-HhhcCchhhhhhccCCeEEEecCCCc
Q 014377 5 SKGLVVDLAVVGGGPAGLAVAQQVSEAGLS-VCSIDPSPKLIWPNNYGVWVDE-FEAMDLLDCLDTTWSGAVVHIDDNTK 82 (426)
Q Consensus 5 ~~~~~~dViIvGgG~aGl~~A~~La~~G~~-V~liE~~~~~~~~~~~g~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (426)
++++.+||+|||||++|+++|++|.++|.+ ++|+|++...+ |.|... .+.+-+ .-+.....++...-
T Consensus 4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~G-----g~W~~~ry~~l~~------~~p~~~~~~~~~p~ 72 (443)
T COG2072 4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVG-----GTWRYNRYPGLRL------DSPKWLLGFPFLPF 72 (443)
T ss_pred CcCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcC-----CcchhccCCceEE------CCchheeccCCCcc
Confidence 456789999999999999999999999999 99999987543 333111 000000 00111111111110
Q ss_pred cccCCCccccCHHHHHHHHHHHHHhCCc----EEE-EEEEEEEEEeCCeEEEEEcCCcE--EEcCEEEECCCCCCccccc
Q 014377 83 KDLDRPYGRVNRKLLKSKMLQKCITNGV----KFH-QAKVIKVIHEESKSLLICNDGVT--IQAAVVLDATGFSRCLVQY 155 (426)
Q Consensus 83 ~~~~~~~~~v~r~~l~~~L~~~~~~~gv----~~~-~~~v~~i~~~~~~~~v~~~~g~~--i~a~~vV~AdG~~s~~r~~ 155 (426)
. ....+. ....+...+.+.+.+.+. .+. ..++.....+++.++|+++++.+ +.||.||.|+|..+.-
T Consensus 73 ~-~~~~~~--~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P--- 146 (443)
T COG2072 73 R-WDEAFA--PFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEP--- 146 (443)
T ss_pred C-CcccCC--CcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCC---
Confidence 0 011111 222245555555555443 333 33443444445689999998865 4599999999996632
Q ss_pred cCCCCCceeeEEEEEEE
Q 014377 156 DKPYNPGYQVAYGILAE 172 (426)
Q Consensus 156 ~~~~~~~~~~~~g~~~~ 172 (426)
..|...|...+.|.++.
T Consensus 147 ~iP~~~G~~~f~g~~~H 163 (443)
T COG2072 147 YIPDFAGLDEFKGRILH 163 (443)
T ss_pred CCCCCCCccCCCceEEc
Confidence 12233444444454443
No 101
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.17 E-value=1.6e-08 Score=100.29 Aligned_cols=61 Identities=18% Similarity=0.200 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCe-EEEEEcCCcEEEcCEEEECCCCCCccccc
Q 014377 95 KLLKSKMLQKCITNGVKFH-QAKVIKVIHEESK-SLLICNDGVTIQAAVVLDATGFSRCLVQY 155 (426)
Q Consensus 95 ~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~-~~v~~~~g~~i~a~~vV~AdG~~s~~r~~ 155 (426)
..+.+.|.+.+++.|++++ +++|++|..++++ ..|++.+|++++||.||.|.|.+..+.+.
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~L 291 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKL 291 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHh
Confidence 5677888899988999999 9999999876554 46778888899999999999987666543
No 102
>PLN02612 phytoene desaturase
Probab=99.17 E-value=1.9e-08 Score=100.79 Aligned_cols=52 Identities=13% Similarity=0.252 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhCCcEEE-EEEEEEEEEeCCe--EEEEEcCCcEEEcCEEEECCCC
Q 014377 97 LKSKMLQKCITNGVKFH-QAKVIKVIHEESK--SLLICNDGVTIQAAVVLDATGF 148 (426)
Q Consensus 97 l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~--~~v~~~~g~~i~a~~vV~AdG~ 148 (426)
+.+.|.+.+++.|++++ +++|++|+.++++ +.+.+.+|+++.||.||.|...
T Consensus 310 l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 310 LCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence 44555566666799999 9999999986554 3467788889999999999864
No 103
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.17 E-value=5e-10 Score=111.11 Aligned_cols=113 Identities=22% Similarity=0.285 Sum_probs=83.7
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccC
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLD 86 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
...+||+||||||||+++|..|++.|++|+|+|.... |.+.. ..++ . ....
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~G-------G~~~~---~~~~--------~-----------~~~~ 260 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIG-------GQVKD---TVGI--------E-----------NLIS 260 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC-------Ccccc---CcCc--------c-----------cccc
Confidence 4569999999999999999999999999999975311 11100 0000 0 0000
Q ss_pred CCccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCC
Q 014377 87 RPYGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSR 150 (426)
Q Consensus 87 ~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s 150 (426)
.+ ......+.+.+.+.+.+.|++++ +++|+++..+++.+.+.+.+|.++.+|.||.|+|...
T Consensus 261 ~~--~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 261 VP--YTTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARW 323 (515)
T ss_pred cC--CCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 11 12456677788888888899998 8999999887777888888888999999999999875
No 104
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.17 E-value=2.4e-10 Score=111.97 Aligned_cols=84 Identities=18% Similarity=0.151 Sum_probs=59.5
Q ss_pred ccCHHHHHHHHHHHHHhCC-cEEE-EEEEEEEEEeCCe-EEEEEc---CCc--EEEcCEEEECCCCCCc-cccccCCCC-
Q 014377 91 RVNRKLLKSKMLQKCITNG-VKFH-QAKVIKVIHEESK-SLLICN---DGV--TIQAAVVLDATGFSRC-LVQYDKPYN- 160 (426)
Q Consensus 91 ~v~r~~l~~~L~~~~~~~g-v~~~-~~~v~~i~~~~~~-~~v~~~---~g~--~i~a~~vV~AdG~~s~-~r~~~~~~~- 160 (426)
.+|...+.+.|.+.+++.| ++++ +++|++++.++++ +.+.+. +|. +++|++||.|+|.+|. +++..+...
T Consensus 179 ~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~Gi~~~ 258 (494)
T PRK05257 179 DVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKSGIPEA 258 (494)
T ss_pred EECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHcCCCcc
Confidence 4789999999999998876 8998 9999999986553 666543 353 6999999999998875 333333321
Q ss_pred --CceeeEEEEEEEee
Q 014377 161 --PGYQVAYGILAEVE 174 (426)
Q Consensus 161 --~~~~~~~g~~~~~~ 174 (426)
.....+.|..+.++
T Consensus 259 ~~~~i~PvrGq~l~~~ 274 (494)
T PRK05257 259 KGYGGFPVSGQFLVCE 274 (494)
T ss_pred CCCCeeeeeEEEEEcC
Confidence 11234667766665
No 105
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.17 E-value=2.5e-08 Score=98.23 Aligned_cols=40 Identities=28% Similarity=0.318 Sum_probs=34.7
Q ss_pred cEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCC
Q 014377 110 VKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFS 149 (426)
Q Consensus 110 v~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~ 149 (426)
.+++ +++|++|+.++++++|++.+|+++.||.||.|....
T Consensus 238 ~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~ 278 (462)
T TIGR00562 238 TKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHK 278 (462)
T ss_pred CeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHH
Confidence 4577 899999998888888988888889999999998764
No 106
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.16 E-value=4e-10 Score=108.15 Aligned_cols=133 Identities=20% Similarity=0.219 Sum_probs=84.1
Q ss_pred EEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCC------cccc-----hhHHHhh--------------cCchhhhh
Q 014377 13 AVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPN------NYGV-----WVDEFEA--------------MDLLDCLD 67 (426)
Q Consensus 13 iIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~------~~g~-----~~~~l~~--------------~~~~~~~~ 67 (426)
+|||||+||+++|+.|+++|.+|+|+|+.+..+..- .|.. ....... ....+.+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 699999999999999999999999999987653210 1110 0000011 11111110
Q ss_pred hc-cCCeEEEecCCCccccCCCc-cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEE
Q 014377 68 TT-WSGAVVHIDDNTKKDLDRPY-GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLD 144 (426)
Q Consensus 68 ~~-~~~~~~~~~~~~~~~~~~~~-~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~ 144 (426)
.- -.+..+..... ...| ..-....+.+.|.+.+.+.|++++ +++|++++.+++.+.+++ +++++.||.||.
T Consensus 81 ~~~~~Gv~~~~~~~-----g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIl 154 (400)
T TIGR00275 81 FFESLGLELKVEED-----GRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVIL 154 (400)
T ss_pred HHHHcCCeeEEecC-----CEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEE
Confidence 00 00111111110 0011 012357788889999988999999 899999987777777776 566899999999
Q ss_pred CCCCCCc
Q 014377 145 ATGFSRC 151 (426)
Q Consensus 145 AdG~~s~ 151 (426)
|+|..|.
T Consensus 155 AtG~~s~ 161 (400)
T TIGR00275 155 ATGGLSY 161 (400)
T ss_pred CCCCccc
Confidence 9998873
No 107
>PLN02661 Putative thiazole synthesis
Probab=99.15 E-value=5.9e-10 Score=102.18 Aligned_cols=133 Identities=23% Similarity=0.277 Sum_probs=80.5
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHC-CCcEEEEcCCCCCCCCCcccchhHHHhhcCc----hhhhhhccCCeEEEecCCC
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEA-GLSVCSIDPSPKLIWPNNYGVWVDEFEAMDL----LDCLDTTWSGAVVHIDDNT 81 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~-G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~ 81 (426)
..++||+|||||++|+++|+.|++. |++|+|||+...++- ..|..- ..+...-+ ...+. .+. +.+...
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GG-G~~~gg-~l~~~~vv~~~a~e~Le-ElG---V~fd~~- 162 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGG-GAWLGG-QLFSAMVVRKPAHLFLD-ELG---VPYDEQ- 162 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccc-ceeeCc-ccccccccccHHHHHHH-HcC---CCcccC-
Confidence 3468999999999999999999975 899999999865432 111100 00000000 01110 110 011110
Q ss_pred ccccCCCcccc-CHHHHHHHHHHHHHh-CCcEEE-EEEEEEEEEeCCeE-EEEE------cC--------CcEEEcCEEE
Q 014377 82 KKDLDRPYGRV-NRKLLKSKMLQKCIT-NGVKFH-QAKVIKVIHEESKS-LLIC------ND--------GVTIQAAVVL 143 (426)
Q Consensus 82 ~~~~~~~~~~v-~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~~~~~-~v~~------~~--------g~~i~a~~vV 143 (426)
..|..+ +...+.+.|.+++.+ .|++++ ++.|+++..+++.+ .|.+ .+ ...++|+.||
T Consensus 163 -----dgy~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVV 237 (357)
T PLN02661 163 -----ENYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVV 237 (357)
T ss_pred -----CCeeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEE
Confidence 112222 445666778877765 899999 89999998776653 2221 11 1368999999
Q ss_pred ECCCCCCc
Q 014377 144 DATGFSRC 151 (426)
Q Consensus 144 ~AdG~~s~ 151 (426)
+|+|..+.
T Consensus 238 lATGh~g~ 245 (357)
T PLN02661 238 SSCGHDGP 245 (357)
T ss_pred EcCCCCCc
Confidence 99996653
No 108
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.15 E-value=3.7e-10 Score=107.82 Aligned_cols=139 Identities=19% Similarity=0.221 Sum_probs=90.0
Q ss_pred CCCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhc----CchhhhhhccCCeEEEecCCC
Q 014377 6 KGLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAM----DLLDCLDTTWSGAVVHIDDNT 81 (426)
Q Consensus 6 ~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~ 81 (426)
+++..+|+|||||||||++|..|.++|++|+++||.+.++ |.|.-.-+.- .+-+.+....+.....+.+..
T Consensus 3 ~~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iG-----GlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfp 77 (448)
T KOG1399|consen 3 MMMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIG-----GLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFP 77 (448)
T ss_pred cCCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCcc-----ceEeecCcccccccchhhhhhccCChhhhcCCCCC
Confidence 4456799999999999999999999999999999988754 3442110000 000111111111111111111
Q ss_pred ccccCCCccccCHHHHHHHHHHHHHhCCc--EEE-EEEEEEEEEeC-CeEEEEEcCC----cEEEcCEEEECCCCCC
Q 014377 82 KKDLDRPYGRVNRKLLKSKMLQKCITNGV--KFH-QAKVIKVIHEE-SKSLLICNDG----VTIQAAVVLDATGFSR 150 (426)
Q Consensus 82 ~~~~~~~~~~v~r~~l~~~L~~~~~~~gv--~~~-~~~v~~i~~~~-~~~~v~~~~g----~~i~a~~vV~AdG~~s 150 (426)
-..- .+-...++..+.+.|...|..-+. .+. +++|..+.... +.|.|.+.++ ++..+|.||.|+|.+.
T Consensus 78 f~~~-~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~ 153 (448)
T KOG1399|consen 78 FPER-DPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYV 153 (448)
T ss_pred Cccc-CcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcC
Confidence 0000 111135677999999999998765 455 78888888877 6898887655 3667999999999983
No 109
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=99.14 E-value=6.6e-09 Score=92.21 Aligned_cols=62 Identities=26% Similarity=0.312 Sum_probs=49.3
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEEEEEEEEEEEeCC--------------------eEEEEEcCC--cEEEcCEEEECCC
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFHQAKVIKVIHEES--------------------KSLLICNDG--VTIQAAVVLDATG 147 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~--------------------~~~v~~~~g--~~i~a~~vV~AdG 147 (426)
+.+|...|...+++++...|+.+.+.+|++++.+.. ++.|...|+ +++++.++|.|.|
T Consensus 238 Gwfdpw~LLs~~rrk~~~lGv~f~~GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAG 317 (509)
T KOG2853|consen 238 GWFDPWALLSGIRRKAITLGVQFVKGEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAG 317 (509)
T ss_pred cccCHHHHHHHHHHHhhhhcceEecceEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccC
Confidence 458999999999999999999988889988886522 133444444 5789999999999
Q ss_pred CCCc
Q 014377 148 FSRC 151 (426)
Q Consensus 148 ~~s~ 151 (426)
++|-
T Consensus 318 a~s~ 321 (509)
T KOG2853|consen 318 AWSG 321 (509)
T ss_pred ccHH
Confidence 9985
No 110
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.13 E-value=4.4e-10 Score=109.95 Aligned_cols=86 Identities=15% Similarity=0.139 Sum_probs=62.2
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeC-CeEEEEEc---CC--cEEEcCEEEECCCCCCc-cccccCCCC-
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEE-SKSLLICN---DG--VTIQAAVVLDATGFSRC-LVQYDKPYN- 160 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~-~~~~v~~~---~g--~~i~a~~vV~AdG~~s~-~r~~~~~~~- 160 (426)
+.||...+.+.|.+.+.+.|++++ +++|++++.++ +++.+++. +| .+++|++||.|.|.+|. +++..+...
T Consensus 173 g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~Gi~~~ 252 (483)
T TIGR01320 173 TDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSGIPEV 252 (483)
T ss_pred EEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcCCCcC
Confidence 358999999999999999999999 99999998864 45666532 33 36999999999998874 344343321
Q ss_pred --CceeeEEEEEEEeec
Q 014377 161 --PGYQVAYGILAEVEE 175 (426)
Q Consensus 161 --~~~~~~~g~~~~~~~ 175 (426)
.....+.|..+..+.
T Consensus 253 ~~~~i~P~~Gq~l~l~~ 269 (483)
T TIGR01320 253 KGFAGFPVSGLFLRCGN 269 (483)
T ss_pred CCCceeeeeEEEEEeCC
Confidence 122446777777653
No 111
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.13 E-value=5.7e-10 Score=108.49 Aligned_cols=84 Identities=17% Similarity=0.082 Sum_probs=60.9
Q ss_pred ccCHHHHHHHHHHHHHh-CCcEEE-EEEEEEEEEe-CCeEEEE---EcCCc--EEEcCEEEECCCCCCc-cccccCCCC-
Q 014377 91 RVNRKLLKSKMLQKCIT-NGVKFH-QAKVIKVIHE-ESKSLLI---CNDGV--TIQAAVVLDATGFSRC-LVQYDKPYN- 160 (426)
Q Consensus 91 ~v~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~-~~~~~v~---~~~g~--~i~a~~vV~AdG~~s~-~r~~~~~~~- 160 (426)
.||...+.+.|.+.+.+ .|++++ +++|++++.+ +++|++. +.+++ +++||+||.|.|.+|. +.+..+...
T Consensus 180 ~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~Gi~~~ 259 (497)
T PRK13339 180 DVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKSGIPES 259 (497)
T ss_pred ecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHHcCCCcc
Confidence 58999999999999965 589998 9999999877 6667765 33442 6999999999999985 333333321
Q ss_pred --CceeeEEEEEEEee
Q 014377 161 --PGYQVAYGILAEVE 174 (426)
Q Consensus 161 --~~~~~~~g~~~~~~ 174 (426)
.....+.|..+.++
T Consensus 260 ~~~~i~PvkGq~l~l~ 275 (497)
T PRK13339 260 KHLGGFPISGQFLRCT 275 (497)
T ss_pred CCCceEeeeEEEEEec
Confidence 12244667776665
No 112
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.12 E-value=3.1e-08 Score=97.56 Aligned_cols=38 Identities=18% Similarity=0.089 Sum_probs=33.5
Q ss_pred cEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCC
Q 014377 110 VKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATG 147 (426)
Q Consensus 110 v~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG 147 (426)
+++. +++|++|+.+++++.|++.+|+++.||.||.|.-
T Consensus 239 ~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p 277 (463)
T PRK12416 239 TVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAP 277 (463)
T ss_pred ccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCC
Confidence 4577 9999999998888888888888899999999985
No 113
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.12 E-value=3.8e-10 Score=111.08 Aligned_cols=140 Identities=14% Similarity=0.144 Sum_probs=80.5
Q ss_pred CCCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHH--HhhcCchhhhhhccCCeEEEecCCCcc
Q 014377 6 KGLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDE--FEAMDLLDCLDTTWSGAVVHIDDNTKK 83 (426)
Q Consensus 6 ~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (426)
|...|||+||||||||+.+|..|++.|.+|+|||+...-+.....|+..+. +............ ....+...
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~-~~~g~~~~----- 74 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGKLGGTCLHKGCIPSKALLHSAEVFQTAKKA-SPFGISVS----- 74 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCcceEcCCcCchHHHHHHHHHHHHHHHH-HhcCccCC-----
Confidence 345799999999999999999999999999999986433333333443321 1111111111000 00000000
Q ss_pred ccCCCcccc--CHHH----HHHHHHHHHHhCCcEEEEEEEEEEEEe-----CCeEEEEEcCC--cEEEcCEEEECCCCCC
Q 014377 84 DLDRPYGRV--NRKL----LKSKMLQKCITNGVKFHQAKVIKVIHE-----ESKSLLICNDG--VTIQAAVVLDATGFSR 150 (426)
Q Consensus 84 ~~~~~~~~v--~r~~----l~~~L~~~~~~~gv~~~~~~v~~i~~~-----~~~~~v~~~~g--~~i~a~~vV~AdG~~s 150 (426)
.....+..+ .+.. +.+...+.+.+.|++++..+++.+..+ ++.+.|.+.+| .++.+|.||.|+|...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p 154 (472)
T PRK05976 75 GPALDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRP 154 (472)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCC
Confidence 001111111 1112 233333445567999986666665433 23677777777 5799999999999876
Q ss_pred c
Q 014377 151 C 151 (426)
Q Consensus 151 ~ 151 (426)
.
T Consensus 155 ~ 155 (472)
T PRK05976 155 V 155 (472)
T ss_pred C
Confidence 3
No 114
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.11 E-value=1.4e-09 Score=107.02 Aligned_cols=146 Identities=21% Similarity=0.238 Sum_probs=84.1
Q ss_pred CCCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCC--C-CCC-cccc-hh---------------HHH----hhcC
Q 014377 6 KGLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL--I-WPN-NYGV-WV---------------DEF----EAMD 61 (426)
Q Consensus 6 ~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~--~-~~~-~~g~-~~---------------~~l----~~~~ 61 (426)
|+.++||||||+|++|+++|+.+++.|.+|+||||.+.. + ... ..|. +. ..+ +..+
T Consensus 1 ~~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (466)
T PRK08274 1 MASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTG 80 (466)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhC
Confidence 456799999999999999999999999999999998631 1 000 0110 00 000 0000
Q ss_pred -c--hhhh----h-----hcc---CCeEEEecCCCccccCCCccc--cCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEe
Q 014377 62 -L--LDCL----D-----TTW---SGAVVHIDDNTKKDLDRPYGR--VNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHE 123 (426)
Q Consensus 62 -~--~~~~----~-----~~~---~~~~~~~~~~~~~~~~~~~~~--v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~ 123 (426)
. .+.+ . ..| .+..+................ -....+...|.+.+++.|++++ +++|+++..+
T Consensus 81 ~~~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~ 160 (466)
T PRK08274 81 GRTDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEIRYDAPVTALELD 160 (466)
T ss_pred CCCCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec
Confidence 0 0000 0 001 011111100000000000000 0135678888888988999999 9999999876
Q ss_pred CCeEE-EEE--cCC--cEEEcCEEEECCCCCCc
Q 014377 124 ESKSL-LIC--NDG--VTIQAAVVLDATGFSRC 151 (426)
Q Consensus 124 ~~~~~-v~~--~~g--~~i~a~~vV~AdG~~s~ 151 (426)
+++++ |.. .++ .+++|+.||.|+|..+.
T Consensus 161 ~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~ 193 (466)
T PRK08274 161 DGRFVGARAGSAAGGAERIRAKAVVLAAGGFES 193 (466)
T ss_pred CCeEEEEEEEccCCceEEEECCEEEECCCCCCC
Confidence 66543 333 233 46899999999997554
No 115
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.10 E-value=1.1e-09 Score=109.01 Aligned_cols=147 Identities=18% Similarity=0.185 Sum_probs=85.0
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcc--c-ch-------------hHHHhhc-Cc--hhhh-
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNY--G-VW-------------VDEFEAM-DL--LDCL- 66 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~--g-~~-------------~~~l~~~-~~--~~~~- 66 (426)
+.++||+|||+|+||+++|+.+++.|.+|+|+||.+...-...+ | .+ .+.++.. ++ .+.+
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~ 93 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVR 93 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 45799999999999999999999999999999998754211100 1 00 0011110 11 0000
Q ss_pred ---hh-----cc-CCeEEEecCCC-cc-----ccCCCcc-------ccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEe
Q 014377 67 ---DT-----TW-SGAVVHIDDNT-KK-----DLDRPYG-------RVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHE 123 (426)
Q Consensus 67 ---~~-----~~-~~~~~~~~~~~-~~-----~~~~~~~-------~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~ 123 (426)
.. .| ...-+.+.... .. .-...+. ...-..+.+.|.+++.+.|++++ ++.|+++..+
T Consensus 94 ~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~ 173 (541)
T PRK07804 94 SLVAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHALALDLLTD 173 (541)
T ss_pred HHHHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECeEeeeeEEc
Confidence 00 01 00001111000 00 0000000 01345688889898888899999 9999999876
Q ss_pred CC-eE-EEEE-------cCC-cEEEcCEEEECCCCCCccc
Q 014377 124 ES-KS-LLIC-------NDG-VTIQAAVVLDATGFSRCLV 153 (426)
Q Consensus 124 ~~-~~-~v~~-------~~g-~~i~a~~vV~AdG~~s~~r 153 (426)
++ .+ .+.. .++ .++.|+.||.|+|..+.+.
T Consensus 174 ~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~~~ 213 (541)
T PRK07804 174 GTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQLY 213 (541)
T ss_pred CCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCCCC
Confidence 53 32 2222 233 4689999999999988654
No 116
>PRK06116 glutathione reductase; Validated
Probab=99.08 E-value=5e-10 Score=109.65 Aligned_cols=135 Identities=19% Similarity=0.173 Sum_probs=75.6
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHH--HhhcCchhhhhhccCCeEEEecCCCccc
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDE--FEAMDLLDCLDTTWSGAVVHIDDNTKKD 84 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (426)
+.+|||+||||||||+++|..|++.|.+|+|||+....+...+.|+..+. +....+.+.+....+...+....
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~----- 76 (450)
T PRK06116 2 TKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAKRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTE----- 76 (450)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCC-----
Confidence 35699999999999999999999999999999986433333334443322 11111111111100000000000
Q ss_pred cCCCcccc-C-----HHHHHHHHHHHHHhCCcEEEEEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCc
Q 014377 85 LDRPYGRV-N-----RKLLKSKMLQKCITNGVKFHQAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRC 151 (426)
Q Consensus 85 ~~~~~~~v-~-----r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~ 151 (426)
....+..+ . ...+.+.+.+.+.+.|++++..+++.+. ... |++ +|+++++|.||.|+|....
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~--~~~--v~~-~g~~~~~d~lViATGs~p~ 144 (450)
T PRK06116 77 NKFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVD--AHT--VEV-NGERYTADHILIATGGRPS 144 (450)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CCE--EEE-CCEEEEeCEEEEecCCCCC
Confidence 00111111 0 1223334445555689998855565543 333 444 6778999999999998754
No 117
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.08 E-value=1.1e-09 Score=107.62 Aligned_cols=138 Identities=21% Similarity=0.219 Sum_probs=76.7
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCC-CCCcccchhHH-HhhcCchhhhhhccCCeEEEecCCCccc
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLI-WPNNYGVWVDE-FEAMDLLDCLDTTWSGAVVHIDDNTKKD 84 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~-~~~~~g~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (426)
+..|||+||||||+|+.+|..|++.|.+|+|||+++..+ .....|+.... +... ..... .+.....+.......
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~-~~~~~--~~~~~~~~~~~~~~~- 78 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREA-VLRLI--GFNQNPLYSSYRVKL- 78 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHH-HHHHH--HHhhhhhhcccCCcC-
Confidence 456999999999999999999999999999999965432 22222322211 1000 00000 000000000000000
Q ss_pred cCCCccc-cCH-----HHHHHHHHHHHHhCCcEEEEEEEEEEEEeCCeEEEEEcCCc--EEEcCEEEECCCCCCc
Q 014377 85 LDRPYGR-VNR-----KLLKSKMLQKCITNGVKFHQAKVIKVIHEESKSLLICNDGV--TIQAAVVLDATGFSRC 151 (426)
Q Consensus 85 ~~~~~~~-v~r-----~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g~--~i~a~~vV~AdG~~s~ 151 (426)
..++.. +.+ ..+.+.+.+.+.+.|++++..++..+ +.+.+.|...+|+ ++++|.||.|+|....
T Consensus 79 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~--~~~~~~v~~~~g~~~~~~~d~lviATGs~p~ 150 (461)
T PRK05249 79 -RITFADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFV--DPHTVEVECPDGEVETLTADKIVIATGSRPY 150 (461)
T ss_pred -ccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEe--cCCEEEEEeCCCceEEEEcCEEEEcCCCCCC
Confidence 001111 111 12333455556668999885555443 3456777777764 7999999999997654
No 118
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.07 E-value=8e-08 Score=95.60 Aligned_cols=58 Identities=19% Similarity=0.270 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCe-EEEEEcCCcEEEcCEEEECCCCCCcc
Q 014377 95 KLLKSKMLQKCITNGVKFH-QAKVIKVIHEESK-SLLICNDGVTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 95 ~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~-~~v~~~~g~~i~a~~vV~AdG~~s~~ 152 (426)
..+.+.|.+.+++.|++++ +++|+++..++++ +.|++.+|+++.||.||.|.+.....
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~ 278 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTY 278 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHH
Confidence 5677888888888899999 9999999877665 56888888899999999998875544
No 119
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.07 E-value=6.3e-10 Score=108.65 Aligned_cols=134 Identities=16% Similarity=0.110 Sum_probs=77.6
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHH--HhhcCchhhhhhccCCeEEEecCCCccccC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDE--FEAMDLLDCLDTTWSGAVVHIDDNTKKDLD 86 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
+|||+||||||||+++|..+++.|.+|+|+|+...-+.-..+|+..+. +....+...+.+ .+...+.... ..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~-~~~~g~~~~~-----~~ 75 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPRVGGTCVIRGCVPKKLMVYGSTFGGEFED-AAGYGWTVGK-----AR 75 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCccCceeecCCcCchHHHHHHHHHHHHHhh-hHhcCcCCCC-----CC
Confidence 599999999999999999999999999999986433332334443332 111111111110 0100000000 00
Q ss_pred CCcccc------CHHHHHHHHHHHHHhCCcEEEEEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCc
Q 014377 87 RPYGRV------NRKLLKSKMLQKCITNGVKFHQAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRC 151 (426)
Q Consensus 87 ~~~~~v------~r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~ 151 (426)
..+..+ ....+.+.+.+.+.+.|++++..++..+.. +.+.+. .+|+++.+|.||.|+|....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~--~~v~v~-~~g~~~~~d~lIiATGs~p~ 143 (446)
T TIGR01424 76 FDWKKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGP--NTVEVL-QDGTTYTAKKILIAVGGRPQ 143 (446)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecC--CEEEEe-cCCeEEEcCEEEEecCCcCC
Confidence 111111 012344455556667899988657665542 344443 46778999999999998753
No 120
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.07 E-value=2.2e-09 Score=106.20 Aligned_cols=145 Identities=22% Similarity=0.302 Sum_probs=84.6
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCc--c-cchh--HHH-hhcCch-----------------
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNN--Y-GVWV--DEF-EAMDLL----------------- 63 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~--~-g~~~--~~l-~~~~~~----------------- 63 (426)
+.++||||||+|+||+++|+.+++.|.+|+||||.+..+-... . +.+. ..+ +..++.
T Consensus 59 ~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~ 138 (506)
T PRK06481 59 KDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGT 138 (506)
T ss_pred cccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCC
Confidence 3578999999999999999999999999999999876422110 0 1110 000 011110
Q ss_pred ---hhhh---------hcc---CCeEEEe---cCCC-ccccCCCc-cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEE
Q 014377 64 ---DCLD---------TTW---SGAVVHI---DDNT-KKDLDRPY-GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIH 122 (426)
Q Consensus 64 ---~~~~---------~~~---~~~~~~~---~~~~-~~~~~~~~-~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~ 122 (426)
+++. ..| .+..+.. .... ......+. +...-..+...|.+.+.+.|++++ +++|+++..
T Consensus 139 ~d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~ 218 (506)
T PRK06481 139 NDKALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITE 218 (506)
T ss_pred CCHHHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEe
Confidence 0000 001 0111110 0000 00000111 112234577888888888999999 999999987
Q ss_pred eCCeE---EEEEcCC--cEEEcCEEEECCCCCCc
Q 014377 123 EESKS---LLICNDG--VTIQAAVVLDATGFSRC 151 (426)
Q Consensus 123 ~~~~~---~v~~~~g--~~i~a~~vV~AdG~~s~ 151 (426)
+++.+ .+...++ .++.||.||.|+|..+.
T Consensus 219 ~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~ 252 (506)
T PRK06481 219 KDGKVTGVKVKINGKETKTISSKAVVVTTGGFGA 252 (506)
T ss_pred cCCEEEEEEEEeCCCeEEEEecCeEEEeCCCccc
Confidence 66643 3333443 36899999999997654
No 121
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.06 E-value=7.9e-08 Score=94.45 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=34.8
Q ss_pred EEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCC
Q 014377 111 KFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSR 150 (426)
Q Consensus 111 ~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s 150 (426)
+++ +++|++|+.+++++.|++.+|+++.||.||.|...+.
T Consensus 235 ~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~~ 275 (451)
T PRK11883 235 TIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPV 275 (451)
T ss_pred eEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHHH
Confidence 577 9999999988888888888999999999999987543
No 122
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=99.04 E-value=1.1e-08 Score=97.98 Aligned_cols=62 Identities=19% Similarity=0.232 Sum_probs=55.5
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCcc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~~ 152 (426)
+.++...+...|.+.+.+ |++++ +++|++++.+++++.|++.+|.+++||.||.|+|.++..
T Consensus 130 g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~~ 192 (381)
T TIGR03197 130 GWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAGQ 192 (381)
T ss_pred cccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCccccc
Confidence 458999999999999998 99998 899999998888888988888889999999999998753
No 123
>PRK10262 thioredoxin reductase; Provisional
Probab=99.03 E-value=7.8e-09 Score=96.64 Aligned_cols=116 Identities=21% Similarity=0.208 Sum_probs=78.7
Q ss_pred CCCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCcccc
Q 014377 6 KGLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDL 85 (426)
Q Consensus 6 ~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (426)
....+||+||||||||+++|..|+++|++|++||+....+ .+... .. .+.++..
T Consensus 3 ~~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg---~~~~~---------~~--~~~~~~~------------ 56 (321)
T PRK10262 3 TTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGG---QLTTT---------TE--VENWPGD------------ 56 (321)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCC---ceecC---------ce--ECCCCCC------------
Confidence 3467999999999999999999999999999999643211 11000 00 0111110
Q ss_pred CCCccccCHHHHHHHHHHHHHhCCcEEEEEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCc
Q 014377 86 DRPYGRVNRKLLKSKMLQKCITNGVKFHQAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRC 151 (426)
Q Consensus 86 ~~~~~~v~r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~ 151 (426)
+ ..++...+.+.+.+.+...++++...+|++++..++.+.++..+ .++.+|.||.|+|.+..
T Consensus 57 --~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~v~~~~-~~~~~d~vilAtG~~~~ 118 (321)
T PRK10262 57 --P-NDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLTGDS-GEYTCDALIIATGASAR 118 (321)
T ss_pred --C-CCCCHHHHHHHHHHHHHHCCCEEEeeEEEEEEecCCeEEEEecC-CEEEECEEEECCCCCCC
Confidence 0 12345566677777777777777655677888777777776544 47899999999998764
No 124
>PRK06370 mercuric reductase; Validated
Probab=99.03 E-value=1.2e-09 Score=107.40 Aligned_cols=136 Identities=17% Similarity=0.124 Sum_probs=74.7
Q ss_pred CCCCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHH--HhhcCchhhhhh-ccCCeEEEecCCC
Q 014377 5 SKGLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDE--FEAMDLLDCLDT-TWSGAVVHIDDNT 81 (426)
Q Consensus 5 ~~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~--l~~~~~~~~~~~-~~~~~~~~~~~~~ 81 (426)
+|+.+|||+||||||+|+++|..|++.|.+|+|||+.+..+....+|+..+. +..........+ ...+.. ...
T Consensus 1 ~~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~--~~~-- 76 (463)
T PRK06370 1 TPAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVS--VGG-- 76 (463)
T ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcc--cCc--
Confidence 3566799999999999999999999999999999997543333334443221 111111111100 011110 000
Q ss_pred ccccCCCcccc-CH-----HHHHHHHHHHHHhC-CcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCcc
Q 014377 82 KKDLDRPYGRV-NR-----KLLKSKMLQKCITN-GVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 82 ~~~~~~~~~~v-~r-----~~l~~~L~~~~~~~-gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~~ 152 (426)
.....+..+ .+ ..+...+.+...+. |++++ ++.+ . .++..+.+ +++++++|.||.|+|.....
T Consensus 77 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~-~--~~~~~v~v---~~~~~~~d~lViATGs~p~~ 147 (463)
T PRK06370 77 --PVSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHAR-F--ESPNTVRV---GGETLRAKRIFINTGARAAI 147 (463)
T ss_pred --cCccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEE-E--ccCCEEEE---CcEEEEeCEEEEcCCCCCCC
Confidence 000111111 00 11233444455555 99988 5543 1 22333333 45689999999999987654
No 125
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.03 E-value=1.8e-09 Score=105.99 Aligned_cols=137 Identities=15% Similarity=0.165 Sum_probs=76.8
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCC-CCCCcccchhHH--HhhcCchhhhhhccCCeEEEecCCCcc
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL-IWPNNYGVWVDE--FEAMDLLDCLDTTWSGAVVHIDDNTKK 83 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~-~~~~~~g~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (426)
+.+|||+||||||+|+.+|..|++.|.+|+|||+.+.. +...+.|+.... +............ ....+....
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~-~~~g~~~~~---- 76 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKAL-AEHGIVFGE---- 76 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhh-hhcCcccCC----
Confidence 45699999999999999999999999999999987432 222233433221 1111111111000 000000000
Q ss_pred ccCCCcccc-C-H----HHHHHHHHHHHHhCCcEEEEEEEEEEEEeCCeEEEEEcCC--cEEEcCEEEECCCCCCc
Q 014377 84 DLDRPYGRV-N-R----KLLKSKMLQKCITNGVKFHQAKVIKVIHEESKSLLICNDG--VTIQAAVVLDATGFSRC 151 (426)
Q Consensus 84 ~~~~~~~~v-~-r----~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g--~~i~a~~vV~AdG~~s~ 151 (426)
...++..+ . + ..+...+...+.+.|++++..++..+ +++.+.|...+| .++.+|.||.|+|....
T Consensus 77 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~--~~~~v~v~~~~g~~~~~~~d~lViATGs~p~ 149 (471)
T PRK06467 77 -PKIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFT--GGNTLEVTGEDGKTTVIEFDNAIIAAGSRPI 149 (471)
T ss_pred -CCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc--cCCEEEEecCCCceEEEEcCEEEEeCCCCCC
Confidence 01111111 1 1 11223333445568999985554432 345667776666 47999999999998653
No 126
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.01 E-value=2.6e-09 Score=105.40 Aligned_cols=145 Identities=21% Similarity=0.348 Sum_probs=84.5
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcc--c-ch-------------hHHHhh-cCc--hhhh---
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNY--G-VW-------------VDEFEA-MDL--LDCL--- 66 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~--g-~~-------------~~~l~~-~~~--~~~~--- 66 (426)
++||+|||+|+||+++|+.+++.|. |+|+||.+...-...+ | .+ .+.++. .++ .+.+
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 80 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV 80 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 4799999999999999999999997 9999998643211110 1 00 000111 011 0000
Q ss_pred -hh-----cc-CCeEEEecCCC--c----cccCCCccc------cCHHHHHHHHHHHHHh-CCcEEE-EEEEEEEEEeCC
Q 014377 67 -DT-----TW-SGAVVHIDDNT--K----KDLDRPYGR------VNRKLLKSKMLQKCIT-NGVKFH-QAKVIKVIHEES 125 (426)
Q Consensus 67 -~~-----~~-~~~~~~~~~~~--~----~~~~~~~~~------v~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~~~ 125 (426)
.. .| ...-+.+.... . ..-...+.. ..-..+.+.|.+.+.+ .|++++ ++.|+++..+++
T Consensus 81 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g 160 (488)
T TIGR00551 81 VSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIETG 160 (488)
T ss_pred HHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeeccCC
Confidence 00 01 00011111000 0 000011111 1346788899999887 799999 999999987665
Q ss_pred eEE-EEEcC-C--cEEEcCEEEECCCCCCcccc
Q 014377 126 KSL-LICND-G--VTIQAAVVLDATGFSRCLVQ 154 (426)
Q Consensus 126 ~~~-v~~~~-g--~~i~a~~vV~AdG~~s~~r~ 154 (426)
.+. +...+ + ..+.|+.||.|+|..+.+..
T Consensus 161 ~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~~~~ 193 (488)
T TIGR00551 161 RVVGVWVWNRETVETCHADAVVLATGGAGKLYQ 193 (488)
T ss_pred EEEEEEEEECCcEEEEEcCEEEECCCcccCCCC
Confidence 543 43332 3 46899999999999987543
No 127
>PRK14694 putative mercuric reductase; Provisional
Probab=99.01 E-value=4.3e-09 Score=103.45 Aligned_cols=141 Identities=15% Similarity=0.077 Sum_probs=76.6
Q ss_pred CCCCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHH-H-hhcCchhhhhhccCCeEEEecCCCc
Q 014377 5 SKGLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDE-F-EAMDLLDCLDTTWSGAVVHIDDNTK 82 (426)
Q Consensus 5 ~~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~-l-~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (426)
+....|||+||||||||+++|..|++.|.+|+|||++...+.-.+.|+..+. + ....+.... ....... ....
T Consensus 2 ~~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~~GGtc~n~GciPsk~l~~~a~~~~~~----~~~~~~~-g~~~ 76 (468)
T PRK14694 2 MSDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGTIGGTCVNIGCVPSKIMIRAAHIAHLR----RESPFDD-GLSA 76 (468)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccccccceecCCccccHHHHHHHHHHHHH----hhccccC-Cccc
Confidence 3456899999999999999999999999999999987532222222332111 1 110000000 0000000 0000
Q ss_pred cccCCCcccc-C-HHHHHHHH-----HHHHHh-CCcEEEEEEEEEEEEeCCeEEEEEcCC--cEEEcCEEEECCCCCCcc
Q 014377 83 KDLDRPYGRV-N-RKLLKSKM-----LQKCIT-NGVKFHQAKVIKVIHEESKSLLICNDG--VTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 83 ~~~~~~~~~v-~-r~~l~~~L-----~~~~~~-~gv~~~~~~v~~i~~~~~~~~v~~~~g--~~i~a~~vV~AdG~~s~~ 152 (426)
......+..+ . .......+ ...+.+ .+++++..+++.++ .+.+.|++.+| .++++|.||.|+|.....
T Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id--~~~~~V~~~~g~~~~~~~d~lViATGs~p~~ 154 (468)
T PRK14694 77 QAPVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVD--ERTLTVTLNDGGEQTVHFDRAFIGTGARPAE 154 (468)
T ss_pred CCCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEec--CCEEEEEecCCCeEEEECCEEEEeCCCCCCC
Confidence 0000111111 0 11111111 111223 47888866777774 44677877777 479999999999987643
No 128
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.01 E-value=3e-09 Score=104.77 Aligned_cols=140 Identities=19% Similarity=0.224 Sum_probs=74.6
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcC-------CCCCCCCCcccchhHH--HhhcCchhhhhhccCCeEEEe
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDP-------SPKLIWPNNYGVWVDE--FEAMDLLDCLDTTWSGAVVHI 77 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~-------~~~~~~~~~~g~~~~~--l~~~~~~~~~~~~~~~~~~~~ 77 (426)
...|||+||||||||+++|..+++.|.+|+|||+ ....+.-.+.|+..+. +....+.....+......+..
T Consensus 2 ~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~ 81 (475)
T PRK06327 2 SKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHV 81 (475)
T ss_pred CcceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccC
Confidence 3469999999999999999999999999999998 2111111122222211 111111111110000000000
Q ss_pred cCCCccccCCCccc-cCH-----HHHHHHHHHHHHhCCcEEEEEEEEEEEEeCCeEEEEE--cCCcEEEcCEEEECCCCC
Q 014377 78 DDNTKKDLDRPYGR-VNR-----KLLKSKMLQKCITNGVKFHQAKVIKVIHEESKSLLIC--NDGVTIQAAVVLDATGFS 149 (426)
Q Consensus 78 ~~~~~~~~~~~~~~-v~r-----~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~--~~g~~i~a~~vV~AdG~~ 149 (426)
. .....+.. +.+ ..+.+.+.+.+...|++++..++..+..+++..+|.+ .+++++++|.||.|+|..
T Consensus 82 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~ 156 (475)
T PRK06327 82 D-----GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSE 156 (475)
T ss_pred C-----CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCC
Confidence 0 00011111 111 1222344444555799988666655554443444443 345689999999999987
Q ss_pred Cc
Q 014377 150 RC 151 (426)
Q Consensus 150 s~ 151 (426)
..
T Consensus 157 p~ 158 (475)
T PRK06327 157 PR 158 (475)
T ss_pred CC
Confidence 63
No 129
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.01 E-value=4.7e-09 Score=101.74 Aligned_cols=143 Identities=19% Similarity=0.213 Sum_probs=80.1
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCc---ccch-----------h-HHHhhc-C--chhhhh--
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNN---YGVW-----------V-DEFEAM-D--LLDCLD-- 67 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~---~g~~-----------~-~~l~~~-~--~~~~~~-- 67 (426)
.++||||||+|.||+++|+.++ .|.+|+|+||.+..+.... .|.+ . +.++.- . -.+.+.
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s~~a~ggi~~~~~~d~~~~~~~d~~~~g~~~~d~~lv~~~ 81 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNTYLAQGGISVARNKDDITSFVEDTLKAGQYENNLEAVKIL 81 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCchHHHhHhheeCCCCCCHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 5689999999999999999975 6999999999875421111 0111 0 001100 0 000000
Q ss_pred --h-----cc-CCeEEEecCCC-cccc----CCCcc------ccCHHHHHHHHHHHHHh-CCcEEE-EEEEEEEEEeCCe
Q 014377 68 --T-----TW-SGAVVHIDDNT-KKDL----DRPYG------RVNRKLLKSKMLQKCIT-NGVKFH-QAKVIKVIHEESK 126 (426)
Q Consensus 68 --~-----~~-~~~~~~~~~~~-~~~~----~~~~~------~v~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~~~~ 126 (426)
. .| ...-+.+.... .... ..... -.....+.+.|.+.+.+ .|++++ +++|+++..+++.
T Consensus 82 ~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~ 161 (433)
T PRK06175 82 ANESIENINKLIDMGLNFDKDEKELSYTKEGAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIENDNT 161 (433)
T ss_pred HHHHHHHHHHHHHcCCccccCCCceeeeccCccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEecCCE
Confidence 0 01 00001111000 0000 00000 01335677788888775 699999 9999999876664
Q ss_pred E-EEE-EcCCc--EEEcCEEEECCCCCCc
Q 014377 127 S-LLI-CNDGV--TIQAAVVLDATGFSRC 151 (426)
Q Consensus 127 ~-~v~-~~~g~--~i~a~~vV~AdG~~s~ 151 (426)
+ .|. ..++. ++.|+.||.|+|..+.
T Consensus 162 v~Gv~~~~~g~~~~i~Ak~VILAtGG~~~ 190 (433)
T PRK06175 162 CIGAICLKDNKQINIYSKVTILATGGIGG 190 (433)
T ss_pred EEEEEEEECCcEEEEEcCeEEEccCcccc
Confidence 3 222 33443 6899999999998664
No 130
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=99.00 E-value=5.7e-09 Score=86.33 Aligned_cols=131 Identities=26% Similarity=0.373 Sum_probs=77.5
Q ss_pred EEECchHHHHHHHHHHHHC-----CCcEEEEcCCCCCCCCCcccch--hHHH-----hhcCchh--h--hhhccCCeEEE
Q 014377 13 AVVGGGPAGLAVAQQVSEA-----GLSVCSIDPSPKLIWPNNYGVW--VDEF-----EAMDLLD--C--LDTTWSGAVVH 76 (426)
Q Consensus 13 iIvGgG~aGl~~A~~La~~-----G~~V~liE~~~~~~~~~~~g~~--~~~l-----~~~~~~~--~--~~~~~~~~~~~ 76 (426)
+||||||+|++++..|.+. ..+|+|||+.+. +....|..- ...+ ..+.+.. . --..|-...-.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~-G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~ 79 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF-GAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGA 79 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc-cccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCc
Confidence 5999999999999999876 579999999654 211222111 0000 0111100 0 00011000000
Q ss_pred ecCCCccccCCCccccCHHHHHHHHHHHHHh------CCcEEE--EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCC
Q 014377 77 IDDNTKKDLDRPYGRVNRKLLKSKMLQKCIT------NGVKFH--QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGF 148 (426)
Q Consensus 77 ~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~------~gv~~~--~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~ 148 (426)
+ ......+...+.|..+-+.|.+.... .|+++. ..+|+++...+++..+.+.+|.++.+|.||.|+|.
T Consensus 80 --~--~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 80 --D--EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred --c--cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 0 00111122346676666655554432 355544 77999999998889999999999999999999995
No 131
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.00 E-value=4.5e-09 Score=103.04 Aligned_cols=145 Identities=21% Similarity=0.271 Sum_probs=84.7
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCC--cccc------------hh-HHHhhc-Cc--hhhhh----
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPN--NYGV------------WV-DEFEAM-DL--LDCLD---- 67 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~--~~g~------------~~-~~l~~~-~~--~~~~~---- 67 (426)
+||+|||||+||+++|+.+++.|.+|+|+|+.+...... ..|. +. +.++.. ++ .+.+.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~ 81 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS 81 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 799999999999999999999999999999975321100 0011 00 011100 01 01010
Q ss_pred h-----cc-CCeEEEecCC---CccccCCCcc--ccCHHHHHHHHHHHHHhCCcEEEEEEEEEEEEeCCeEEEEEcCCcE
Q 014377 68 T-----TW-SGAVVHIDDN---TKKDLDRPYG--RVNRKLLKSKMLQKCITNGVKFHQAKVIKVIHEESKSLLICNDGVT 136 (426)
Q Consensus 68 ~-----~~-~~~~~~~~~~---~~~~~~~~~~--~v~r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g~~ 136 (426)
+ .| ...-+.+... ........+. ...-..+.+.|.+.+.+.|++++...++++..+++.+.....++..
T Consensus 82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~v~~l~~~~g~v~Gv~~~g~~ 161 (466)
T PRK08401 82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRGFAEELAIKNGKAYGVFLDGEL 161 (466)
T ss_pred HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEeEeEEEEeeCCEEEEEEECCEE
Confidence 0 01 0001111110 0000000000 0123568888999998899998855788887666665433336678
Q ss_pred EEcCEEEECCCCCCcccc
Q 014377 137 IQAAVVLDATGFSRCLVQ 154 (426)
Q Consensus 137 i~a~~vV~AdG~~s~~r~ 154 (426)
+.++.||.|+|..+....
T Consensus 162 i~a~~VVLATGG~~~~~~ 179 (466)
T PRK08401 162 LKFDATVIATGGFSGLFK 179 (466)
T ss_pred EEeCeEEECCCcCcCCCC
Confidence 999999999999987653
No 132
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.99 E-value=7.4e-09 Score=101.85 Aligned_cols=136 Identities=18% Similarity=0.168 Sum_probs=75.6
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHH--HhhcCchhhhhhccCCeEEEecCCCcccc
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDE--FEAMDLLDCLDTTWSGAVVHIDDNTKKDL 85 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (426)
..|||+||||||||+++|..|++.|.+|+|+|+.+.-+....+|+..+. +......+.... .+...+.... .
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~~GG~c~~~gciP~k~l~~~~~~~~~~~~-~~~~g~~~~~---~-- 76 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEKLGGTCLNRGCIPSKALLHAAERADEARH-SEDFGIKAEN---V-- 76 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccceeecccCCcHHHHHhhhHHHHHHH-HHhcCcccCC---C--
Confidence 4699999999999999999999999999999987632222223332211 111111111110 0000000000 0
Q ss_pred CCCccc-cCH-----HHHHHHHHHHHHhCCcEEEEEEEEEEEEeCCeEEEEEcC-CcEEEcCEEEECCCCCCc
Q 014377 86 DRPYGR-VNR-----KLLKSKMLQKCITNGVKFHQAKVIKVIHEESKSLLICND-GVTIQAAVVLDATGFSRC 151 (426)
Q Consensus 86 ~~~~~~-v~r-----~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~-g~~i~a~~vV~AdG~~s~ 151 (426)
...+.. +++ ..+...+...+.+.|++++..+++.+ +...+.|...+ ++++.+|.||.|+|....
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~--~~~~~~v~~~~~~~~~~~d~lViAtGs~p~ 147 (462)
T PRK06416 77 GIDFKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLV--DPNTVRVMTEDGEQTYTAKNIILATGSRPR 147 (462)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc--cCCEEEEecCCCcEEEEeCEEEEeCCCCCC
Confidence 001110 111 12223355556668999885555443 34456665433 368999999999998753
No 133
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.99 E-value=4.5e-09 Score=105.65 Aligned_cols=58 Identities=21% Similarity=0.264 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEE-E---EEcCCc--EEEcCEEEECCCCCCcc
Q 014377 95 KLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSL-L---ICNDGV--TIQAAVVLDATGFSRCL 152 (426)
Q Consensus 95 ~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~-v---~~~~g~--~i~a~~vV~AdG~~s~~ 152 (426)
..+...|.+.+.+.|++++ ++.|+++..+++.+. + ...+++ .+.|+.||.|+|..+.+
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~ 199 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGRV 199 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcCC
Confidence 5678888888888899999 999999987666432 2 234553 68999999999998754
No 134
>PLN02507 glutathione reductase
Probab=98.99 E-value=3.9e-09 Score=104.18 Aligned_cols=137 Identities=18% Similarity=0.103 Sum_probs=77.0
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCC----------CCCCCCCcccchhHH--HhhcCchhhhhhccCCeEE
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPS----------PKLIWPNNYGVWVDE--FEAMDLLDCLDTTWSGAVV 75 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~----------~~~~~~~~~g~~~~~--l~~~~~~~~~~~~~~~~~~ 75 (426)
.+|||+||||||+|+.+|..+++.|.+|+|||+. ..-+...+.|+..+. +....+.+.+.+. ....+
T Consensus 24 ~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~-~~~G~ 102 (499)
T PLN02507 24 YDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDA-KNYGW 102 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHH-HhcCc
Confidence 3699999999999999999999999999999962 111111122333221 1111111111110 00000
Q ss_pred EecCCCccccCCCccc-cC-----HHHHHHHHHHHHHhCCcEEEEEEEEEEEEeCCeEEEEEcCCc--EEEcCEEEECCC
Q 014377 76 HIDDNTKKDLDRPYGR-VN-----RKLLKSKMLQKCITNGVKFHQAKVIKVIHEESKSLLICNDGV--TIQAAVVLDATG 147 (426)
Q Consensus 76 ~~~~~~~~~~~~~~~~-v~-----r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g~--~i~a~~vV~AdG 147 (426)
.... .....+.. +. ...+...+.+.+...|++++..++..+ +.+.+.|+..+|+ ++.+|.||.|+|
T Consensus 103 ~~~~----~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~v--d~~~v~V~~~~g~~~~~~~d~LIIATG 176 (499)
T PLN02507 103 EINE----KVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIV--GPNEVEVTQLDGTKLRYTAKHILIATG 176 (499)
T ss_pred ccCC----CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEe--cCCEEEEEeCCCcEEEEEcCEEEEecC
Confidence 0000 00011111 10 122333444455568999886666555 3456778877875 589999999999
Q ss_pred CCCc
Q 014377 148 FSRC 151 (426)
Q Consensus 148 ~~s~ 151 (426)
....
T Consensus 177 s~p~ 180 (499)
T PLN02507 177 SRAQ 180 (499)
T ss_pred CCCC
Confidence 8764
No 135
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.98 E-value=3.8e-09 Score=102.58 Aligned_cols=59 Identities=25% Similarity=0.339 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEE-EEE---cCCc--EEEcCEEEECCCCCCc
Q 014377 93 NRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSL-LIC---NDGV--TIQAAVVLDATGFSRC 151 (426)
Q Consensus 93 ~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~-v~~---~~g~--~i~a~~vV~AdG~~s~ 151 (426)
.-..+...|.+.+++.|++++ +++++++..++++++ |.. .+|+ +++|+.||.|+|..+.
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 457888999999999999999 999999999887653 332 3454 6889999999998875
No 136
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.98 E-value=2e-08 Score=87.21 Aligned_cols=145 Identities=19% Similarity=0.268 Sum_probs=87.9
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCC------CcEEEEcCCCCCCCCC--cccc---hh-----HHHhhcC------chh
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAG------LSVCSIDPSPKLIWPN--NYGV---WV-----DEFEAMD------LLD 64 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G------~~V~liE~~~~~~~~~--~~g~---~~-----~~l~~~~------~~~ 64 (426)
.....|+|||||+.|.++|++|++++ ++|+|||+........ .-|. |- ..|..+. +.+
T Consensus 8 ~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~Lsd 87 (380)
T KOG2852|consen 8 GNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEELSD 87 (380)
T ss_pred CCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHHHH
Confidence 34578999999999999999999998 8999999976542211 1111 11 1122211 112
Q ss_pred hhh--hccC-----CeEEEec--CCCccc--------------------cCCCccccCHHHHHHHHHHHHHh-CCcEEEE
Q 014377 65 CLD--TTWS-----GAVVHID--DNTKKD--------------------LDRPYGRVNRKLLKSKMLQKCIT-NGVKFHQ 114 (426)
Q Consensus 65 ~~~--~~~~-----~~~~~~~--~~~~~~--------------------~~~~~~~v~r~~l~~~L~~~~~~-~gv~~~~ 114 (426)
..+ ..|. .+.+... +..... .....++|+...|.+.++..+.+ .||++.-
T Consensus 88 eydGvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V~lv~ 167 (380)
T KOG2852|consen 88 EYDGVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGVKLVF 167 (380)
T ss_pred hhcCcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcCeEEEE
Confidence 111 1221 1111111 000000 01234579999999999999998 5599887
Q ss_pred EEEEEEEEeCCeEE-EEEc---C-CcEEEcCEEEECCCCCCc
Q 014377 115 AKVIKVIHEESKSL-LICN---D-GVTIQAAVVLDATGFSRC 151 (426)
Q Consensus 115 ~~v~~i~~~~~~~~-v~~~---~-g~~i~a~~vV~AdG~~s~ 151 (426)
..|.++..+.+++. +..+ + ......+.+|.+.|.++.
T Consensus 168 Gkv~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTs 209 (380)
T KOG2852|consen 168 GKVKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTS 209 (380)
T ss_pred eeeEEeecccccccccchhhhcCceEEeeeeEEEEecCCCch
Confidence 78888864444332 2222 2 346778999999999975
No 137
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.98 E-value=4.1e-09 Score=103.93 Aligned_cols=133 Identities=23% Similarity=0.309 Sum_probs=82.9
Q ss_pred cEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHh-hcC---chhhhhhccCCeEEEecCCCccccC
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFE-AMD---LLDCLDTTWSGAVVHIDDNTKKDLD 86 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
.|+|||||++||++|..|.+.|++|+++|+.+..+ |.|...-. .-+ +.+.+....+.....+.+.. .+
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iG-----G~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp---~p 74 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIG-----GLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFP---FP 74 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSS-----GGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS----HC
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCC-----ccCeeCCcCCCCccccccceEEeeCchHhcCCCcC---CC
Confidence 59999999999999999999999999999988654 55632100 000 00111001111111111111 01
Q ss_pred CCc-cccCHHHHHHHHHHHHHhCCc--EEE-EEEEEEEEEeC-----CeEEEEEcCC---cEEEcCEEEECCCCCCc
Q 014377 87 RPY-GRVNRKLLKSKMLQKCITNGV--KFH-QAKVIKVIHEE-----SKSLLICNDG---VTIQAAVVLDATGFSRC 151 (426)
Q Consensus 87 ~~~-~~v~r~~l~~~L~~~~~~~gv--~~~-~~~v~~i~~~~-----~~~~v~~~~g---~~i~a~~vV~AdG~~s~ 151 (426)
..+ ...++..+.+.|...+..-+. .+. +++|++++..+ +.|.|++.++ ++-.+|.||.|+|.++.
T Consensus 75 ~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~ 151 (531)
T PF00743_consen 75 EDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSK 151 (531)
T ss_dssp CCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCC
Confidence 111 146899999999999998765 466 99999998764 3688887654 24568999999999874
No 138
>PTZ00058 glutathione reductase; Provisional
Probab=98.97 E-value=3e-09 Score=105.55 Aligned_cols=47 Identities=28% Similarity=0.334 Sum_probs=38.7
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccch
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVW 53 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~ 53 (426)
..+|||+||||||+|..+|..+++.|.+|+|||++..-+...++|+.
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~~GGtCln~GCi 92 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDYLGGTCVNVGCV 92 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecccccccccccCCC
Confidence 36799999999999999999999999999999997543433444554
No 139
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.97 E-value=6.3e-09 Score=101.60 Aligned_cols=132 Identities=18% Similarity=0.163 Sum_probs=73.0
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHH--HhhcCchhhhhhccCCeEEEecCCCccccC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDE--FEAMDLLDCLDTTWSGAVVHIDDNTKKDLD 86 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
+|||+||||||+|+.+|..|++.|.+|+|+|+....+...++|+..+. +....+.....+. +...+... . ...
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~-~~~g~~~~--~--~~~ 76 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERMHDA-ADYGFYQN--L--ENT 76 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEecccccccceeccCcCccHHHHHHHHHHHHHhHH-hhcCcccC--C--cCc
Confidence 599999999999999999999999999999997533333333443321 1111111111100 00000000 0 000
Q ss_pred CCccccC------HHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCc
Q 014377 87 RPYGRVN------RKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRC 151 (426)
Q Consensus 87 ~~~~~v~------r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~ 151 (426)
..+..+. ...+.+.+...+.+.|++++ ++.+ + .+++.+.+ +++++.+|.||.|+|....
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~--~-~~~~~v~v---~~~~~~~d~vIiAtGs~p~ 142 (450)
T TIGR01421 77 FNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHAR--F-TKDGTVEV---NGRDYTAPHILIATGGKPS 142 (450)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE--E-ccCCEEEE---CCEEEEeCEEEEecCCCCC
Confidence 1111111 11233445555666899988 5432 1 12333333 5668999999999998754
No 140
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.96 E-value=3.8e-09 Score=103.64 Aligned_cols=134 Identities=18% Similarity=0.238 Sum_probs=73.2
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCC-CCCCCcccchhHH--HhhcCchhhhhh-ccCCeEEEecCCCccc
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPK-LIWPNNYGVWVDE--FEAMDLLDCLDT-TWSGAVVHIDDNTKKD 84 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~-~~~~~~~g~~~~~--l~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 84 (426)
+|||+||||||||+.+|..+++.|.+|+|||+... -+.-.++|+..+. +........+.. ......+.. .
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~------~ 76 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEV------K 76 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccc------c
Confidence 59999999999999999999999999999997432 2222334443322 111111111100 000000000 0
Q ss_pred cCCCcccc-C-----HHHHHHHHHHHHHhCCcEEEEEEEEEEEEeCCeEEEEEcCCc--EEEcCEEEECCCCCC
Q 014377 85 LDRPYGRV-N-----RKLLKSKMLQKCITNGVKFHQAKVIKVIHEESKSLLICNDGV--TIQAAVVLDATGFSR 150 (426)
Q Consensus 85 ~~~~~~~v-~-----r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g~--~i~a~~vV~AdG~~s 150 (426)
....+..+ . ...+.+.+.......|++++..+. .+. +++++.|...+|+ ++++|.||.|+|...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a-~~~-~~~~v~v~~~~g~~~~~~~d~lVIATGs~p 148 (466)
T PRK06115 77 PTLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWG-RLD-GVGKVVVKAEDGSETQLEAKDIVIATGSEP 148 (466)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEc-cCCEEEEEcCCCceEEEEeCEEEEeCCCCC
Confidence 00111110 0 111223333344457898874332 332 3445667666664 699999999999865
No 141
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.96 E-value=6.5e-09 Score=101.58 Aligned_cols=122 Identities=16% Similarity=0.179 Sum_probs=72.2
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCC--CCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCcccc
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL--IWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDL 85 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~--~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (426)
+.|||+||||||||+.+|..|++.|.+|+|||+.+.. +.....|+..... ++.....
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~-------l~~~~~~-------------- 60 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKT-------LVHDAQQ-------------- 60 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHH-------HHHHhcc--------------
Confidence 4699999999999999999999999999999997531 1111122221110 0000000
Q ss_pred CCCccc-cC-HHH----HHHHHHHHHHh-CCcEEEEEEEEEEEEeCCeEEEEEcCCc-EEEcCEEEECCCCCCcc
Q 014377 86 DRPYGR-VN-RKL----LKSKMLQKCIT-NGVKFHQAKVIKVIHEESKSLLICNDGV-TIQAAVVLDATGFSRCL 152 (426)
Q Consensus 86 ~~~~~~-v~-r~~----l~~~L~~~~~~-~gv~~~~~~v~~i~~~~~~~~v~~~~g~-~i~a~~vV~AdG~~s~~ 152 (426)
...+.. +. +.. +.+...+...+ .|++++..++..+. .+.+.|.+.++. ++.+|.||.|+|.....
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~--~~~~~v~~~~g~~~~~~d~lviATGs~p~~ 133 (441)
T PRK08010 61 HTDFVRAIQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFIN--NHSLRVHRPEGNLEIHGEKIFINTGAQTVV 133 (441)
T ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHhhcCCcEEEEEEEEEec--CCEEEEEeCCCeEEEEeCEEEEcCCCcCCC
Confidence 001110 11 111 11112223333 58998855665543 456777777775 79999999999987643
No 142
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.96 E-value=7e-09 Score=104.46 Aligned_cols=60 Identities=22% Similarity=0.386 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEE-EE---EcCCc--EEEcCEEEECCCCCCcccc
Q 014377 95 KLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSL-LI---CNDGV--TIQAAVVLDATGFSRCLVQ 154 (426)
Q Consensus 95 ~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~-v~---~~~g~--~i~a~~vV~AdG~~s~~r~ 154 (426)
..+...|.+.+.+.|++++ ++.++++..+++.+. |. ..+|+ .+.|+.||.|+|..+.+..
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~~~~ 195 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRIYK 195 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCcccCCCC
Confidence 4577788888888899999 999999987766543 22 23553 6899999999999886543
No 143
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.95 E-value=8.5e-09 Score=100.75 Aligned_cols=141 Identities=23% Similarity=0.314 Sum_probs=82.6
Q ss_pred cEEEECchHHHHHHHHHHHHCC-CcEEEEcCCCCCCCCCc-ccc--h---hHHHhhcCch--------------------
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAG-LSVCSIDPSPKLIWPNN-YGV--W---VDEFEAMDLL-------------------- 63 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G-~~V~liE~~~~~~~~~~-~g~--~---~~~l~~~~~~-------------------- 63 (426)
||||||||+||+++|+.++++| .+|+||||.+..+-... .+. + ....+..++.
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 8999999999999999999999 99999999876421110 010 0 0000011110
Q ss_pred hhhh----h-----cc-C-CeEEEecCC---CccccC---CCc-cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeC
Q 014377 64 DCLD----T-----TW-S-GAVVHIDDN---TKKDLD---RPY-GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEE 124 (426)
Q Consensus 64 ~~~~----~-----~~-~-~~~~~~~~~---~~~~~~---~~~-~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~ 124 (426)
+++. . .| . +..+..... ...... .+. +...-..+.+.|.+.+.+.|++++ +++|+++..++
T Consensus 81 ~l~~~~~~~~~~~i~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~ 160 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQDGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDD 160 (439)
T ss_pred HHHHHHHhccHHHHHHHHhCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCEEEeCCEeeEeEECC
Confidence 0000 0 01 0 111111000 000000 011 113446788899999999999999 99999998764
Q ss_pred -CeE---EEEEcCCc--EEEcCEEEECCCCCCc
Q 014377 125 -SKS---LLICNDGV--TIQAAVVLDATGFSRC 151 (426)
Q Consensus 125 -~~~---~v~~~~g~--~i~a~~vV~AdG~~s~ 151 (426)
+.+ .+...+++ .+.+|.||.|+|..+.
T Consensus 161 ~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 161 QGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred CCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 322 33334443 4789999999998876
No 144
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.95 E-value=1.8e-08 Score=97.00 Aligned_cols=62 Identities=16% Similarity=0.123 Sum_probs=52.5
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCC-eEEEEEcCCcEEEcCEEEECCCCCCcc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEES-KSLLICNDGVTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~-~~~v~~~~g~~i~a~~vV~AdG~~s~~ 152 (426)
+.+|...+.+.|...|.+.|+.+. ++.|+++....+ .+.|.+.-| .+++..||+|+|.+...
T Consensus 182 G~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWAr~ 245 (856)
T KOG2844|consen 182 GVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWARE 245 (856)
T ss_pred cccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHHHH
Confidence 468999999999999999999999 999999976544 346777666 59999999999999743
No 145
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.95 E-value=3.3e-07 Score=90.02 Aligned_cols=34 Identities=29% Similarity=0.514 Sum_probs=31.7
Q ss_pred cEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCC
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL 44 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~ 44 (426)
+|+|||||++|+++|+.|+++|++|+|+|+.+..
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~ 34 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVL 34 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 5899999999999999999999999999998754
No 146
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.94 E-value=1e-08 Score=103.00 Aligned_cols=59 Identities=17% Similarity=0.234 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHh-CCcEEE-EEEEEEEEEeCCeEE----EEEcCC--cEEEcCEEEECCCCCCccc
Q 014377 95 KLLKSKMLQKCIT-NGVKFH-QAKVIKVIHEESKSL----LICNDG--VTIQAAVVLDATGFSRCLV 153 (426)
Q Consensus 95 ~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~~~~~~----v~~~~g--~~i~a~~vV~AdG~~s~~r 153 (426)
..+...|.+++.+ .+++++ ++.++++..+++.+. +...+| ..+.|+.||.|+|..|.+-
T Consensus 133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l~ 199 (582)
T PRK09231 133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVY 199 (582)
T ss_pred HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCCC
Confidence 4577778887776 589988 999999987766543 233456 4789999999999988764
No 147
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.93 E-value=2.8e-08 Score=100.36 Aligned_cols=143 Identities=17% Similarity=0.142 Sum_probs=82.8
Q ss_pred CcCcEEEECchHHHHHHHHHHHHC--CCcEEEEcCCCCCCCCCcc-cc--hh-------------HH-Hhh-cCc--hhh
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEA--GLSVCSIDPSPKLIWPNNY-GV--WV-------------DE-FEA-MDL--LDC 65 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~--G~~V~liE~~~~~~~~~~~-g~--~~-------------~~-l~~-~~~--~~~ 65 (426)
.++||+|||||+||+++|+.+++. |.+|+||||.+........ |. .. +. +.. .++ .+.
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~l 89 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDL 89 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHH
Confidence 368999999999999999999998 9999999998643111100 10 00 00 000 000 000
Q ss_pred hh----h-----cc---CCeEEEecCCCccccCC--CccccCHHHHHHHHHHHHHhCC-cEEE-EEEEEEEEEeCCeEE-
Q 014377 66 LD----T-----TW---SGAVVHIDDNTKKDLDR--PYGRVNRKLLKSKMLQKCITNG-VKFH-QAKVIKVIHEESKSL- 128 (426)
Q Consensus 66 ~~----~-----~~---~~~~~~~~~~~~~~~~~--~~~~v~r~~l~~~L~~~~~~~g-v~~~-~~~v~~i~~~~~~~~- 128 (426)
+. . .| -+..+...... ..... ....++...+...|.+.+.+.+ ++++ ++.|+++..+++.+.
T Consensus 90 v~~~~~~s~~~i~~L~~~Gv~f~~~~~G-~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~G 168 (608)
T PRK06854 90 VYDIARHVDSVVHLFEEWGLPIWKDENG-KYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAG 168 (608)
T ss_pred HHHHHHhHHHHHHHHHHcCCeeeecCCC-CccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEE
Confidence 00 0 00 01111111100 00000 0002355678888888887765 9999 999999987666442
Q ss_pred E---EEcCCc--EEEcCEEEECCCCCCc
Q 014377 129 L---ICNDGV--TIQAAVVLDATGFSRC 151 (426)
Q Consensus 129 v---~~~~g~--~i~a~~vV~AdG~~s~ 151 (426)
| ...+++ .+.|+.||.|+|..+.
T Consensus 169 v~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 169 AVGFSVRENKFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred EEEEEccCCcEEEEECCEEEECCCchhh
Confidence 2 233453 6899999999998764
No 148
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.93 E-value=7.4e-09 Score=97.48 Aligned_cols=110 Identities=16% Similarity=0.135 Sum_probs=67.3
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCC----C-----cccchh---HHHhhcCchhhhhhccCCeEEEe
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWP----N-----NYGVWV---DEFEAMDLLDCLDTTWSGAVVHI 77 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~----~-----~~g~~~---~~l~~~~~~~~~~~~~~~~~~~~ 77 (426)
.||+|||||++|+.+|+.|+++|++|+|+|+.+....+ . .|.... ..+...|+.......+....+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~Gll~~em~~lgsl~~~a 82 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAVGLLKEEMRRLGSLIMEA 82 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcCCchHHHHHHhcchheec
Confidence 59999999999999999999999999999987654221 1 111111 11233443321111122111111
Q ss_pred cCCCcccc-CCCccccCHHHHHHHHHHHHHh-CCcEEEEEEEEEEE
Q 014377 78 DDNTKKDL-DRPYGRVNRKLLKSKMLQKCIT-NGVKFHQAKVIKVI 121 (426)
Q Consensus 78 ~~~~~~~~-~~~~~~v~r~~l~~~L~~~~~~-~gv~~~~~~v~~i~ 121 (426)
.+ .... ...+-.++|..|.+.|.+++.+ .+++++..+|+++.
T Consensus 83 ad--~~~vPA~gaLvvdR~~~~~~L~~~L~~~pnI~l~~~eV~~l~ 126 (436)
T PRK05335 83 AD--AHRVPAGGALAVDREGFSEYVTEALENHPLITVIREEVTEIP 126 (436)
T ss_pred cc--ccCCCCccceecCHHHHHHHHHHHHHcCCCcEEEccchhccc
Confidence 10 1111 1112247999999999999887 68998866887775
No 149
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.92 E-value=6e-09 Score=101.68 Aligned_cols=119 Identities=21% Similarity=0.308 Sum_probs=70.2
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcc---cchhHH--HhhcCchhhhhhccCCeEEEecCCCc
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNY---GVWVDE--FEAMDLLDCLDTTWSGAVVHIDDNTK 82 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~---g~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (426)
.+|||+||||||||+++|..|++.|.+|+|||+++.. +..+| |+.... +.... .
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~-~GG~c~~~gciP~k~~~~~~~---------~----------- 60 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAM-YGGTCINIGCIPTKTLLVAAE---------K----------- 60 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcc-cceeeecCccccchHhhhhhh---------c-----------
Confidence 3699999999999999999999999999999997632 11111 221110 00000 0
Q ss_pred cccCCCccc-cC-H----HHHHHHHHHHHHhCCcEEEEEEEEEEEEeCCeEEEEEcC-CcEEEcCEEEECCCCCCcc
Q 014377 83 KDLDRPYGR-VN-R----KLLKSKMLQKCITNGVKFHQAKVIKVIHEESKSLLICND-GVTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 83 ~~~~~~~~~-v~-r----~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~-g~~i~a~~vV~AdG~~s~~ 152 (426)
...+.. +. + ..+.....+...+.|++++..++..+ ++..+.+...+ ..++.+|.||.|+|..+..
T Consensus 61 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~--~~~~v~v~~~~~~~~~~~d~vViATGs~~~~ 132 (438)
T PRK07251 61 ---NLSFEQVMATKNTVTSRLRGKNYAMLAGSGVDLYDAEAHFV--SNKVIEVQAGDEKIELTAETIVINTGAVSNV 132 (438)
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc--cCCEEEEeeCCCcEEEEcCEEEEeCCCCCCC
Confidence 001111 11 1 11222333445567999884444332 34445555433 3579999999999987643
No 150
>PLN02487 zeta-carotene desaturase
Probab=98.92 E-value=2.4e-06 Score=84.93 Aligned_cols=36 Identities=25% Similarity=0.489 Sum_probs=33.5
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL 44 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~ 44 (426)
..+|+|||||++|+++|+.|++.|++|+|+|+.+..
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~ 110 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFI 110 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCC
Confidence 459999999999999999999999999999998765
No 151
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.91 E-value=6.7e-09 Score=89.50 Aligned_cols=134 Identities=25% Similarity=0.279 Sum_probs=77.7
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCC----CCcccchhH----HHhhcC--chhh--------hhhccC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIW----PNNYGVWVD----EFEAMD--LLDC--------LDTTWS 71 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~----~~~~g~~~~----~l~~~~--~~~~--------~~~~~~ 71 (426)
.+|+|||+||+|+++|+.|+..|++|+|+||....+- .+.-+.+.+ .++.-+ +.+. +-..|.
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~ 81 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWT 81 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeecc
Confidence 4799999999999999999999999999999865411 000111111 011000 0011 111232
Q ss_pred CeEEEecC--CCccccCCCccc-cCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCC-cEEEcCEEEECC
Q 014377 72 GAVVHIDD--NTKKDLDRPYGR-VNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDG-VTIQAAVVLDAT 146 (426)
Q Consensus 72 ~~~~~~~~--~~~~~~~~~~~~-v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g-~~i~a~~vV~Ad 146 (426)
.....+.. ......+.||-- -.-+.|.+.|. ...++. +++|+.+...++.|++.+++| +...+|.||.|-
T Consensus 82 ~~~~~~~~~~~~~~~d~~pyvg~pgmsalak~LA-----tdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~ 156 (331)
T COG3380 82 PAVWTFTGDGSPPRGDEDPYVGEPGMSALAKFLA-----TDLTVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAI 156 (331)
T ss_pred ccccccccCCCCCCCCCCccccCcchHHHHHHHh-----ccchhhhhhhhhhheecCCeeEEEecCCCcccccceEEEec
Confidence 11111111 111122233321 22344554443 345566 999999999999999999776 567799999986
Q ss_pred CC
Q 014377 147 GF 148 (426)
Q Consensus 147 G~ 148 (426)
-.
T Consensus 157 PA 158 (331)
T COG3380 157 PA 158 (331)
T ss_pred CC
Confidence 54
No 152
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.91 E-value=8.6e-09 Score=101.34 Aligned_cols=136 Identities=17% Similarity=0.136 Sum_probs=72.6
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHH--HhhcCchhhhhhccCCeEEEecCCCcccc
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDE--FEAMDLLDCLDTTWSGAVVHIDDNTKKDL 85 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (426)
.+|||+||||||||+++|..|++.|.+|+|||++...+....+|+..+. +....+.....+......+. . ..
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~--~----~~ 76 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGIS--G----EV 76 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCC--c----Cc
Confidence 4699999999999999999999999999999987543333333433221 11111111111100000000 0 00
Q ss_pred CCCcccc--CHHHH----HHHHHHHHHhCCcEEEEEEEEEEEEeCCeEEEEEcCC--cEEEcCEEEECCCCCCc
Q 014377 86 DRPYGRV--NRKLL----KSKMLQKCITNGVKFHQAKVIKVIHEESKSLLICNDG--VTIQAAVVLDATGFSRC 151 (426)
Q Consensus 86 ~~~~~~v--~r~~l----~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g--~~i~a~~vV~AdG~~s~ 151 (426)
...+..+ ....+ ...........+++.+..+..- .+.+.+.|...+| .++++|.||.|+|....
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~--~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~ 148 (466)
T PRK07818 77 TFDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTF--TDANTLEVDLNDGGTETVTFDNAIIATGSSTR 148 (466)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE--cCCCEEEEEecCCCeeEEEcCEEEEeCCCCCC
Confidence 1111111 11111 1222222334577776333221 2345566666665 37999999999998764
No 153
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.90 E-value=1.2e-08 Score=97.95 Aligned_cols=141 Identities=19% Similarity=0.196 Sum_probs=79.2
Q ss_pred CCCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCC-CCCCCCcccchhHH--HhhcCchhhhhhccCCeEEEecCCCc
Q 014377 6 KGLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP-KLIWPNNYGVWVDE--FEAMDLLDCLDTTWSGAVVHIDDNTK 82 (426)
Q Consensus 6 ~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~-~~~~~~~~g~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (426)
++.+||++||||||+|..+|..+++.|.+|+++|+.+ .-+...++|+.++. +....+.....+.-...-+.....
T Consensus 1 ~~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~-- 78 (454)
T COG1249 1 MMKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVP-- 78 (454)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCC--
Confidence 3567999999999999999999999999999999994 43444445665432 222222111111100111111110
Q ss_pred cccCCCccc-cC-H----HHHHHHHHHHHHhCCcEEEEEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCccc
Q 014377 83 KDLDRPYGR-VN-R----KLLKSKMLQKCITNGVKFHQAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRCLV 153 (426)
Q Consensus 83 ~~~~~~~~~-v~-r----~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~~r 153 (426)
...+.. +. + ..+...+.....+.|++++..+..-+ +++.+.|...+.++++++.+|.|+|.++...
T Consensus 79 ---~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~--~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~ 150 (454)
T COG1249 79 ---KIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFV--DPHTVEVTGEDKETITADNIIIATGSRPRIP 150 (454)
T ss_pred ---CcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEEC--CCCEEEEcCCCceEEEeCEEEEcCCCCCcCC
Confidence 111111 11 1 11222233334446999884333211 1445555544457899999999999987543
No 154
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.89 E-value=2.5e-08 Score=101.11 Aligned_cols=55 Identities=15% Similarity=0.199 Sum_probs=41.1
Q ss_pred HHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEE-EEE---cCCc--EEEcCEEEECCCCCCcc
Q 014377 98 KSKMLQKCITNGVKFH-QAKVIKVIHEESKSL-LIC---NDGV--TIQAAVVLDATGFSRCL 152 (426)
Q Consensus 98 ~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~-v~~---~~g~--~i~a~~vV~AdG~~s~~ 152 (426)
.+.|.+.+.+.|++++ ++.++++..+++.+. |.. .+|. .+.|+.||.|+|..+.+
T Consensus 173 ~~~L~~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~ 234 (640)
T PRK07573 173 YQALSRQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYGNV 234 (640)
T ss_pred HHHHHHHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCcccC
Confidence 3566667777899999 999999987666542 333 2453 68999999999987754
No 155
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.89 E-value=2.1e-08 Score=95.15 Aligned_cols=110 Identities=20% Similarity=0.257 Sum_probs=64.2
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCc---------ccch---hHHHhhcCchhhhhhccCCeEEEe
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNN---------YGVW---VDEFEAMDLLDCLDTTWSGAVVHI 77 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~---------~g~~---~~~l~~~~~~~~~~~~~~~~~~~~ 77 (426)
.||+|||||++|+.+|+.|+++|++|+|+|+++....+.. |... ...+...++....-..+....+..
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~p~~~~~~~~elvcs~Slgg~~l~~a~Gil~~ei~~lg~l~~~~ 80 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLTPAHHTEDLAELVCSNSLGAKALDRAAGLLKTEMRQLSSLIITA 80 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccCchhhhhhhhhhcccccccchhHHhccCcHHHHHhhcCeeeeeh
Confidence 4899999999999999999999999999998775422211 1000 011122232211111111111111
Q ss_pred cCCCccccC-CCccccCHHHHHHHHHHHHHh-CCcEEEEEEEEEEE
Q 014377 78 DDNTKKDLD-RPYGRVNRKLLKSKMLQKCIT-NGVKFHQAKVIKVI 121 (426)
Q Consensus 78 ~~~~~~~~~-~~~~~v~r~~l~~~L~~~~~~-~gv~~~~~~v~~i~ 121 (426)
.+. .... .....++|..+.+.+.+++.+ .++.+...+|.++.
T Consensus 81 ad~--~~Ipagg~~~vDR~lF~~~L~~qLe~~pnItviq~eV~dL~ 124 (433)
T TIGR00137 81 ADR--HAVPAGGALAVDRGIFSRSLTEQVASHPNVTLIREEVTEIP 124 (433)
T ss_pred hhh--hCCCCCceEEehHHHHHHHHHHHHHhCCCcEEEeeeeEEEc
Confidence 111 1111 112246999999999999887 67776677777655
No 156
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.89 E-value=2.2e-08 Score=100.34 Aligned_cols=145 Identities=19% Similarity=0.227 Sum_probs=83.2
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCc--ccchh----------H--------HHhhc-Cc--hh
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNN--YGVWV----------D--------EFEAM-DL--LD 64 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~--~g~~~----------~--------~l~~~-~~--~~ 64 (426)
.++||+|||+|.||+++|+.+++.|.+|+|+||.+....... .|.+. + .+..- ++ .+
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~ 83 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQD 83 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCHH
Confidence 568999999999999999999999999999999864311110 01100 0 01000 00 00
Q ss_pred hhh----h-----cc-CCeEEEecCCC-c----ccc-CCCccc------cCHHHHHHHHHHHHHhCCcEEE-EEEEEEEE
Q 014377 65 CLD----T-----TW-SGAVVHIDDNT-K----KDL-DRPYGR------VNRKLLKSKMLQKCITNGVKFH-QAKVIKVI 121 (426)
Q Consensus 65 ~~~----~-----~~-~~~~~~~~~~~-~----~~~-~~~~~~------v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~ 121 (426)
.+. . .| ...-+.|.... . ... ...+.. -.-..+...|.+.+.+.|++++ ++.++++.
T Consensus 84 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~~~~Li 163 (566)
T PRK06452 84 AAELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVDFYNEWFSLDLV 163 (566)
T ss_pred HHHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCEEEeCcEEEEEE
Confidence 000 0 01 00011111000 0 000 000100 1234577788888888899999 99999999
Q ss_pred EeCCeEE-EEE---cCC--cEEEcCEEEECCCCCCcc
Q 014377 122 HEESKSL-LIC---NDG--VTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 122 ~~~~~~~-v~~---~~g--~~i~a~~vV~AdG~~s~~ 152 (426)
.+++.++ |.. .++ ..+.|+.||.|+|..+.+
T Consensus 164 ~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~l 200 (566)
T PRK06452 164 TDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMGML 200 (566)
T ss_pred EECCEEEEEEEEECCCCeEEEEEeCeEEECCCccccc
Confidence 8766543 332 233 368899999999987754
No 157
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.88 E-value=1.1e-08 Score=100.67 Aligned_cols=135 Identities=19% Similarity=0.241 Sum_probs=73.3
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHH--HhhcCchhhhhhccCCeEEEecCCCccccC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDE--FEAMDLLDCLDTTWSGAVVHIDDNTKKDLD 86 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
.|||+||||||||+.+|..|++.|.+|+|||+....+.....|+.... +....+...+.. .....+... ...
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~-~~~~g~~~~-----~~~ 74 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKEYLGGTCLNVGCIPTKALLHSAEVYDEIKH-AKDYGIEVE-----NVS 74 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceeecCccchHHHHHHhhHHHHHHH-HHhcCCCCC-----CCc
Confidence 389999999999999999999999999999994322222222332221 111111111100 000000000 000
Q ss_pred CCcccc-C-----HHHHHHHHHHHHHhCCcEEEEEEEEEEEEeCCeEEEEEcCC-cEEEcCEEEECCCCCCc
Q 014377 87 RPYGRV-N-----RKLLKSKMLQKCITNGVKFHQAKVIKVIHEESKSLLICNDG-VTIQAAVVLDATGFSRC 151 (426)
Q Consensus 87 ~~~~~v-~-----r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g-~~i~a~~vV~AdG~~s~ 151 (426)
.++..+ . ...+...+...+.+.|++++..++..+ +++.+.+...+| .++++|.||.|+|....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~--~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~ 144 (461)
T TIGR01350 75 VDWEKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFL--DPGTVLVTGENGEETLTAKNIIIATGSRPR 144 (461)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc--cCCEEEEecCCCcEEEEeCEEEEcCCCCCC
Confidence 111111 0 112223334445567899885554433 345566766665 57999999999998653
No 158
>PRK07208 hypothetical protein; Provisional
Probab=98.88 E-value=1.4e-06 Score=86.30 Aligned_cols=39 Identities=26% Similarity=0.516 Sum_probs=35.5
Q ss_pred CCCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCC
Q 014377 6 KGLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL 44 (426)
Q Consensus 6 ~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~ 44 (426)
|+.+.||+|||||++||++|+.|+++|++|+|+|+.+..
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~ 39 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVV 39 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 456789999999999999999999999999999997765
No 159
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.87 E-value=7.4e-07 Score=84.99 Aligned_cols=34 Identities=32% Similarity=0.675 Sum_probs=31.8
Q ss_pred cEEEECchHHHHHHHHHHHHCC--CcEEEEcCCCCC
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAG--LSVCSIDPSPKL 44 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G--~~V~liE~~~~~ 44 (426)
.|+|||||++||++|+.|++++ .+|+|+|+++..
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~ 37 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRV 37 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCC
Confidence 5899999999999999999999 999999998665
No 160
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.87 E-value=3.9e-08 Score=99.19 Aligned_cols=58 Identities=17% Similarity=0.286 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhCCcEEE-EEEEEEEEEeC-CeEE-EE---EcCCc--EEEcCEEEECCCCCCcc
Q 014377 95 KLLKSKMLQKCITNGVKFH-QAKVIKVIHEE-SKSL-LI---CNDGV--TIQAAVVLDATGFSRCL 152 (426)
Q Consensus 95 ~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~-~~~~-v~---~~~g~--~i~a~~vV~AdG~~s~~ 152 (426)
..+...|.+.+.+.|++++ ++.++++..++ +.+. |. ..+|. .+.|+.||.|+|..+..
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 214 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRA 214 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCccc
Confidence 4678888888888999999 99999998765 4332 32 23553 68899999999987753
No 161
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.87 E-value=2e-08 Score=101.08 Aligned_cols=148 Identities=21% Similarity=0.205 Sum_probs=83.6
Q ss_pred CCCcCcEEEECchHHHHHHHHHHHHCC---CcEEEEcCCCCCCCCCcc---cch---h----H--------HHhh-cCch
Q 014377 6 KGLVVDLAVVGGGPAGLAVAQQVSEAG---LSVCSIDPSPKLIWPNNY---GVW---V----D--------EFEA-MDLL 63 (426)
Q Consensus 6 ~~~~~dViIvGgG~aGl~~A~~La~~G---~~V~liE~~~~~~~~~~~---g~~---~----~--------~l~~-~~~~ 63 (426)
+..++||+|||||+||+++|+.+++.| .+|+|+||.+..+....+ |.+ . + .++. .++.
T Consensus 2 ~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g~~~~ 81 (577)
T PRK06069 2 EVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGSDFLA 81 (577)
T ss_pred CceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHHhhcccC
Confidence 345689999999999999999999998 899999998653211110 100 0 0 0000 0110
Q ss_pred --hhhh----h-----cc---CCeEEEec-CCCc---cccCCCcccc------CHHHHHHHHHHHHHh-CCcEEE-EEEE
Q 014377 64 --DCLD----T-----TW---SGAVVHID-DNTK---KDLDRPYGRV------NRKLLKSKMLQKCIT-NGVKFH-QAKV 117 (426)
Q Consensus 64 --~~~~----~-----~~---~~~~~~~~-~~~~---~~~~~~~~~v------~r~~l~~~L~~~~~~-~gv~~~-~~~v 117 (426)
+.+. . .| -+..+... ++.. ..-...+..+ .-..+.+.|.+++.+ .|++++ ++.+
T Consensus 82 d~~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~i~~~~~v 161 (577)
T PRK06069 82 DQDAVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGGMSFPRTTFAADKTGFYIMHTLYSRALRFDNIHFYDEHFV 161 (577)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCeeEecCCCcEeeeecCCcccceeeEcCCCchHHHHHHHHHHHHhcCCCEEEECCEE
Confidence 0000 0 01 01111110 0000 0000011111 124477778887766 689998 8999
Q ss_pred EEEEEeCCeEE-E---EEcCCc--EEEcCEEEECCCCCCccc
Q 014377 118 IKVIHEESKSL-L---ICNDGV--TIQAAVVLDATGFSRCLV 153 (426)
Q Consensus 118 ~~i~~~~~~~~-v---~~~~g~--~i~a~~vV~AdG~~s~~r 153 (426)
+++..+++.+. | ...+++ .+.|+.||.|+|..+.+.
T Consensus 162 ~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~~ 203 (577)
T PRK06069 162 TSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGRLY 203 (577)
T ss_pred EEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhcccC
Confidence 99987666542 2 224553 589999999999987543
No 162
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.87 E-value=2.8e-08 Score=99.65 Aligned_cols=144 Identities=23% Similarity=0.162 Sum_probs=82.5
Q ss_pred cCcEEEECchHHHHHHHHHHHHC--CCcEEEEcCCCCCCCCCcc--cc-h------------h-HHHhh-cCch--hhhh
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEA--GLSVCSIDPSPKLIWPNNY--GV-W------------V-DEFEA-MDLL--DCLD 67 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~--G~~V~liE~~~~~~~~~~~--g~-~------------~-~~l~~-~~~~--~~~~ 67 (426)
++||+|||||+||+++|+.+++. |.+|+|+||.+.......+ |. . . +.++. .++. +.+.
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv~ 82 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVVE 82 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHHH
Confidence 58999999999999999999986 6899999998654211100 10 0 0 00110 0010 0000
Q ss_pred ----h-----cc---CCeEEEec-CCCc---cccCCCcc---c-c--CHHHHHHHHHHHHHh-CCcEEE-EEEEEEEEEe
Q 014377 68 ----T-----TW---SGAVVHID-DNTK---KDLDRPYG---R-V--NRKLLKSKMLQKCIT-NGVKFH-QAKVIKVIHE 123 (426)
Q Consensus 68 ----~-----~~---~~~~~~~~-~~~~---~~~~~~~~---~-v--~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~ 123 (426)
+ .| -+..+... ++.. ..-...+. + . .-..+...|.+++.+ .+++++ ++.++++..+
T Consensus 83 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~ 162 (580)
T TIGR01176 83 YFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD 162 (580)
T ss_pred HHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEEEEee
Confidence 0 00 01111100 0000 00000110 0 1 235688888888776 589988 8999999887
Q ss_pred CCeEE-E---EEcCC--cEEEcCEEEECCCCCCcc
Q 014377 124 ESKSL-L---ICNDG--VTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 124 ~~~~~-v---~~~~g--~~i~a~~vV~AdG~~s~~ 152 (426)
++.+. | ...+| ..+.|+.||.|+|..+.+
T Consensus 163 ~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 163 DGRVCGLVAIEMAEGRLVTILADAVVLATGGAGRV 197 (580)
T ss_pred CCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence 66543 2 23456 468999999999998865
No 163
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.86 E-value=3.1e-08 Score=97.50 Aligned_cols=54 Identities=19% Similarity=0.204 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCC-eEEEEEcCCcEEEcCEEEECCCC
Q 014377 95 KLLKSKMLQKCITNGVKFH-QAKVIKVIHEES-KSLLICNDGVTIQAAVVLDATGF 148 (426)
Q Consensus 95 ~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~-~~~v~~~~g~~i~a~~vV~AdG~ 148 (426)
..+.+.|.+.+++.|++|+ +++|++|..+++ ++++...+|..+++|.||.+...
T Consensus 224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence 5677888999999999999 999999998876 46777777778999999998776
No 164
>PRK13748 putative mercuric reductase; Provisional
Probab=98.86 E-value=1.2e-08 Score=103.04 Aligned_cols=133 Identities=20% Similarity=0.162 Sum_probs=74.8
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHH--HhhcCchhhhhhccCCeEEEecCCCcccc
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDE--FEAMDLLDCLDTTWSGAVVHIDDNTKKDL 85 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (426)
.+|||+||||||+|+.+|..|++.|.+|+|||++...+.-.++|+..+. +....+..... ... +..+ ...
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~----~~~--~~~g--~~~ 168 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRR----ESP--FDGG--IAA 168 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCcceeeccccCccccHHHHHHHHHHHHHh----ccc--ccCC--ccC
Confidence 4699999999999999999999999999999987433332334444332 11111111110 000 0000 000
Q ss_pred CCCccccCHHHHH-------HH-----HHHHHHh-CCcEEEEEEEEEEEEeCCeEEEEEcCCc--EEEcCEEEECCCCCC
Q 014377 86 DRPYGRVNRKLLK-------SK-----MLQKCIT-NGVKFHQAKVIKVIHEESKSLLICNDGV--TIQAAVVLDATGFSR 150 (426)
Q Consensus 86 ~~~~~~v~r~~l~-------~~-----L~~~~~~-~gv~~~~~~v~~i~~~~~~~~v~~~~g~--~i~a~~vV~AdG~~s 150 (426)
..+ .++...+. .. ..+.+.+ .+++++..++..+ +++.+.|.+.+|+ ++++|.||.|+|...
T Consensus 169 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~--~~~~~~v~~~~g~~~~~~~d~lviAtGs~p 244 (561)
T PRK13748 169 TVP--TIDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFK--DDQTLIVRLNDGGERVVAFDRCLIATGASP 244 (561)
T ss_pred CCC--ccCHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEe--cCCEEEEEeCCCceEEEEcCEEEEcCCCCC
Confidence 000 11222211 11 1122233 3788886566543 3456777776663 699999999999876
Q ss_pred cc
Q 014377 151 CL 152 (426)
Q Consensus 151 ~~ 152 (426)
..
T Consensus 245 ~~ 246 (561)
T PRK13748 245 AV 246 (561)
T ss_pred CC
Confidence 43
No 165
>PRK07121 hypothetical protein; Validated
Probab=98.86 E-value=3.3e-08 Score=97.87 Aligned_cols=58 Identities=19% Similarity=0.269 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeC-CeE-EEEEc-CC--cEEEc-CEEEECCCCCCc
Q 014377 94 RKLLKSKMLQKCITNGVKFH-QAKVIKVIHEE-SKS-LLICN-DG--VTIQA-AVVLDATGFSRC 151 (426)
Q Consensus 94 r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~-~~~-~v~~~-~g--~~i~a-~~vV~AdG~~s~ 151 (426)
-..+.+.|.+.+++.|++++ +++|+++..++ +.+ .|... ++ .++.| +.||.|+|..+.
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~ 240 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAM 240 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCc
Confidence 45688889999988999999 99999998764 333 33332 33 35889 999999998774
No 166
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.85 E-value=1.9e-06 Score=84.64 Aligned_cols=34 Identities=32% Similarity=0.497 Sum_probs=31.8
Q ss_pred cEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCC
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL 44 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~ 44 (426)
+|+|||||++|+++|+.|++.|++|+|+|+++..
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~ 34 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFI 34 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCC
Confidence 5899999999999999999999999999998765
No 167
>PRK09897 hypothetical protein; Provisional
Probab=98.85 E-value=5.5e-08 Score=95.63 Aligned_cols=139 Identities=16% Similarity=0.211 Sum_probs=77.9
Q ss_pred CcEEEECchHHHHHHHHHHHHC--CCcEEEEcCCCCCCCCCcccch-hH--HHhh---cCch--hhhhhccCCeEE--Ee
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEA--GLSVCSIDPSPKLIWPNNYGVW-VD--EFEA---MDLL--DCLDTTWSGAVV--HI 77 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~--G~~V~liE~~~~~~~~~~~g~~-~~--~l~~---~~~~--~~~~~~~~~~~~--~~ 77 (426)
.+|+||||||+|+++|..|.+. .++|+|||+...++....|..- .. .+-. ..+. ...-..|..... .+
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 4899999999999999999876 4699999997655432222110 00 0000 0000 000011211000 00
Q ss_pred c----C----CCccccC-CCccccCHHHHHHHHHHHHHhCC--cEEE-EEEEEEEEEeCCeEEEEEcC-CcEEEcCEEEE
Q 014377 78 D----D----NTKKDLD-RPYGRVNRKLLKSKMLQKCITNG--VKFH-QAKVIKVIHEESKSLLICND-GVTIQAAVVLD 144 (426)
Q Consensus 78 ~----~----~~~~~~~-~~~~~v~r~~l~~~L~~~~~~~g--v~~~-~~~v~~i~~~~~~~~v~~~~-g~~i~a~~vV~ 144 (426)
. . ......+ .-|+..-+..|. .+.+.+.+.| ++++ +++|++++.+++++.+++.+ +..+.+|.||.
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~-~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVL 160 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFL-RLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVI 160 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHH-HHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEE
Confidence 0 0 0001111 111211133333 3445555566 6777 77999999888888888865 46899999999
Q ss_pred CCCCC
Q 014377 145 ATGFS 149 (426)
Q Consensus 145 AdG~~ 149 (426)
|+|..
T Consensus 161 AtGh~ 165 (534)
T PRK09897 161 ATGHV 165 (534)
T ss_pred CCCCC
Confidence 99964
No 168
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.85 E-value=1.2e-08 Score=100.26 Aligned_cols=132 Identities=18% Similarity=0.195 Sum_probs=71.7
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHH--HhhcCchhhhhhccCCeEEEecCCCccccCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDE--FEAMDLLDCLDTTWSGAVVHIDDNTKKDLDR 87 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (426)
|||+||||||+|+++|..|++.|.+|+|||+.+..+...++|+..+. +....+...... ....+.. .....
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~--~~~g~~~-----~~~~~ 73 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARK--PPFGGLA-----ATVAV 73 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCcccCCeeeecEEccHHHHHHHHHHHHhhc--cCccccc-----CCCcc
Confidence 79999999999999999999999999999997643332333443321 111111111110 0000000 00011
Q ss_pred Cccc-c-CHHHHHHH-----HHHHHHhCCcEEEEEEEEEEEEeCCeEEEEEcCC-cEEEcCEEEECCCCCCcc
Q 014377 88 PYGR-V-NRKLLKSK-----MLQKCITNGVKFHQAKVIKVIHEESKSLLICNDG-VTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 88 ~~~~-v-~r~~l~~~-----L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g-~~i~a~~vV~AdG~~s~~ 152 (426)
.+.. + .+..+... +.+.+.+.|++++..++..+ ++. +|.+.+| ..+.+|.||.|+|.....
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~--~~~--~v~v~~g~~~~~~~~lIiATGs~p~~ 142 (463)
T TIGR02053 74 DFGELLEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFK--DPK--TVKVDLGREVRGAKRFLIATGARPAI 142 (463)
T ss_pred CHHHHHHHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEc--cCC--EEEEcCCeEEEEeCEEEEcCCCCCCC
Confidence 1111 1 11122222 23344557999885444432 222 4445555 368899999999987643
No 169
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.85 E-value=3e-08 Score=97.37 Aligned_cols=139 Identities=18% Similarity=0.172 Sum_probs=81.3
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHH--HhhcCchhhhhhccCCeEEEecCCCccccCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDE--FEAMDLLDCLDTTWSGAVVHIDDNTKKDLDR 87 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (426)
.||+||||||+|+.+|..+++.|.+|+|+|+.+..+....+|+..+. +....+.....+. ...-+...... ....
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~-~~~g~~~~~~~--~~~~ 78 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRA-AELGIRFIDDG--EARV 78 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHH-HhCCcccccCc--cccc
Confidence 38999999999999999999999999999997644444444543221 1111111111110 00000000000 0011
Q ss_pred Ccccc----C--HHHHHHHHHHHHHhCCcEEEEEEEEEEE--EeCCeEEEEEcCCc--EEEcCEEEECCCCCCc
Q 014377 88 PYGRV----N--RKLLKSKMLQKCITNGVKFHQAKVIKVI--HEESKSLLICNDGV--TIQAAVVLDATGFSRC 151 (426)
Q Consensus 88 ~~~~v----~--r~~l~~~L~~~~~~~gv~~~~~~v~~i~--~~~~~~~v~~~~g~--~i~a~~vV~AdG~~s~ 151 (426)
.+..+ + ...+.+.+.+.+.+.|++++..+++.++ .+++.+.|.+.+|+ ++.+|.||.|+|..+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~ 152 (466)
T PRK07845 79 DLPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPR 152 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCC
Confidence 11111 0 1122334556666789999866665544 45567788777775 7999999999999764
No 170
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.85 E-value=3.5e-08 Score=99.72 Aligned_cols=58 Identities=17% Similarity=0.223 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhCCcEEE-EEEEEEEEE-eCCeEE-EE---EcCC--cEEEcCEEEECCCCCCcc
Q 014377 95 KLLKSKMLQKCITNGVKFH-QAKVIKVIH-EESKSL-LI---CNDG--VTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 95 ~~l~~~L~~~~~~~gv~~~-~~~v~~i~~-~~~~~~-v~---~~~g--~~i~a~~vV~AdG~~s~~ 152 (426)
..+...|.+++.+.|++++ ++.++++.. +++.+. |. ..+| ..+.|+.||.|+|..+..
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 231 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGRA 231 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCccc
Confidence 4788899999988999999 999999887 444432 32 2355 368899999999987643
No 171
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.84 E-value=4.3e-08 Score=98.70 Aligned_cols=58 Identities=17% Similarity=0.250 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhCCcEEE-EEEEEEEEEe-CCeE-EEEE---cCCc--EEEcCEEEECCCCCCcc
Q 014377 95 KLLKSKMLQKCITNGVKFH-QAKVIKVIHE-ESKS-LLIC---NDGV--TIQAAVVLDATGFSRCL 152 (426)
Q Consensus 95 ~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~-~~~~-~v~~---~~g~--~i~a~~vV~AdG~~s~~ 152 (426)
..+...|.+.+.+.|++++ ++.++++..+ ++.+ .|.. .+|+ .+.|+.||.|+|..+.+
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 213 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGRI 213 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcccc
Confidence 4688888888888999999 9999998875 3433 2332 3453 67899999999988754
No 172
>PLN02546 glutathione reductase
Probab=98.84 E-value=2.8e-08 Score=98.73 Aligned_cols=135 Identities=16% Similarity=0.083 Sum_probs=76.0
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCC----------CCCCCCCcccchhHH--HhhcCchhhhhhccCCeEE
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPS----------PKLIWPNNYGVWVDE--FEAMDLLDCLDTTWSGAVV 75 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~----------~~~~~~~~~g~~~~~--l~~~~~~~~~~~~~~~~~~ 75 (426)
.+|||+||||||+|..+|..+++.|.+|+|+|+. ..-+...++|+..+. +....+...+.+. ....+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~-~~~g~ 156 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEES-RGFGW 156 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhh-hhcCc
Confidence 3599999999999999999999999999999962 111222334554332 1111111111110 00000
Q ss_pred EecCCCccccCCCcccc------CHHHHHHHHHHHHHhCCcEEEEEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCC
Q 014377 76 HIDDNTKKDLDRPYGRV------NRKLLKSKMLQKCITNGVKFHQAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFS 149 (426)
Q Consensus 76 ~~~~~~~~~~~~~~~~v------~r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~ 149 (426)
.... .....+..+ ....+...+.+.+.+.|++++..+++.+.. +.+ .. +|+++.+|.||.|+|..
T Consensus 157 ~~~~----~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~--~~V--~v-~G~~~~~D~LVIATGs~ 227 (558)
T PLN02546 157 KYET----EPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDP--HTV--DV-DGKLYTARNILIAVGGR 227 (558)
T ss_pred ccCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccC--CEE--EE-CCEEEECCEEEEeCCCC
Confidence 0000 001112111 112344455566667899988656555532 233 33 57789999999999987
Q ss_pred Ccc
Q 014377 150 RCL 152 (426)
Q Consensus 150 s~~ 152 (426)
...
T Consensus 228 p~~ 230 (558)
T PLN02546 228 PFI 230 (558)
T ss_pred CCC
Confidence 643
No 173
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.84 E-value=4.3e-08 Score=98.75 Aligned_cols=59 Identities=24% Similarity=0.392 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeC----CeE-EEE---EcCCc--EEEcCEEEECCCCCCcc
Q 014377 94 RKLLKSKMLQKCITNGVKFH-QAKVIKVIHEE----SKS-LLI---CNDGV--TIQAAVVLDATGFSRCL 152 (426)
Q Consensus 94 r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~----~~~-~v~---~~~g~--~i~a~~vV~AdG~~s~~ 152 (426)
-..+...|.+.+.+.|++++ ++.|+++..++ +.+ .+. ..+++ .+.|+.||.|+|..+.+
T Consensus 139 G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 208 (583)
T PRK08205 139 GHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGRV 208 (583)
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCccc
Confidence 35678889998888999999 99999998654 433 232 23453 58899999999988754
No 174
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.84 E-value=4.9e-08 Score=98.68 Aligned_cols=59 Identities=15% Similarity=0.237 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHhCCcEEE-EEEEEEEEEe-CCeEE-EEE---cCC--cEEEcCEEEECCCCCCcc
Q 014377 94 RKLLKSKMLQKCITNGVKFH-QAKVIKVIHE-ESKSL-LIC---NDG--VTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 94 r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~-~~~~~-v~~---~~g--~~i~a~~vV~AdG~~s~~ 152 (426)
-..+...|.+.+.+.|++++ ++.++++..+ ++.+. |.. .+| ..+.|+.||.|+|..+..
T Consensus 186 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 252 (635)
T PLN00128 186 GHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGRA 252 (635)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCccc
Confidence 35678888888888899999 9999998776 44432 322 345 368999999999987754
No 175
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.83 E-value=2.1e-08 Score=99.26 Aligned_cols=142 Identities=23% Similarity=0.255 Sum_probs=79.5
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcc--c-ch---------h----HHHhh-cCc--hhhh---
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNY--G-VW---------V----DEFEA-MDL--LDCL--- 66 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~--g-~~---------~----~~l~~-~~~--~~~~--- 66 (426)
++||+|||+|.||+++|+.+++ |.+|+|+|+.+.......+ | .+ . +.++. .++ .+.+
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~~ 81 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVRYL 81 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHHHH
Confidence 6899999999999999999976 9999999998754211110 1 10 0 00110 010 0000
Q ss_pred -hh-----cc-CCeEEEecCC-Ccc-----ccCCCc-------cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCC
Q 014377 67 -DT-----TW-SGAVVHIDDN-TKK-----DLDRPY-------GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEES 125 (426)
Q Consensus 67 -~~-----~~-~~~~~~~~~~-~~~-----~~~~~~-------~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~ 125 (426)
.. .| ...-+.|... ... .-...+ +...-..+.+.|.+.+. .|++++ ++.++++..+++
T Consensus 82 ~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~g 160 (510)
T PRK08071 82 VEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV-PHVTVVEQEMVIDLIIENG 160 (510)
T ss_pred HHHHHHHHHHHHHcCCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh-cCCEEEECeEhhheeecCC
Confidence 00 00 0001111100 000 000000 01123457777877775 699999 899999987666
Q ss_pred eEE-EEEc--CCc--EEEcCEEEECCCCCCcc
Q 014377 126 KSL-LICN--DGV--TIQAAVVLDATGFSRCL 152 (426)
Q Consensus 126 ~~~-v~~~--~g~--~i~a~~vV~AdG~~s~~ 152 (426)
.+. +... +++ .+.|+.||.|+|..+.+
T Consensus 161 ~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~~ 192 (510)
T PRK08071 161 RCIGVLTKDSEGKLKRYYADYVVLASGGCGGL 192 (510)
T ss_pred EEEEEEEEECCCcEEEEEcCeEEEecCCCccc
Confidence 443 3332 343 68999999999987753
No 176
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.82 E-value=5.1e-08 Score=98.77 Aligned_cols=38 Identities=34% Similarity=0.375 Sum_probs=34.6
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCC
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL 44 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~ 44 (426)
..++||+|||+|+||+++|+.+++.|.+|+|||+.+..
T Consensus 6 ~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~ 43 (626)
T PRK07803 6 RHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFG 43 (626)
T ss_pred ceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence 35689999999999999999999999999999998643
No 177
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.82 E-value=1.2e-07 Score=91.50 Aligned_cols=55 Identities=15% Similarity=0.220 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCe--EEEEEcCCcEEEcCEEEECCCCCC
Q 014377 96 LLKSKMLQKCITNGVKFH-QAKVIKVIHEESK--SLLICNDGVTIQAAVVLDATGFSR 150 (426)
Q Consensus 96 ~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~--~~v~~~~g~~i~a~~vV~AdG~~s 150 (426)
.+-+.|.+.+...|.+++ +++|++|..++++ +.|++++|++++|+.||......+
T Consensus 233 ~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p 290 (443)
T PTZ00363 233 GLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFP 290 (443)
T ss_pred HHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECccccc
Confidence 455666666677888998 9999999877543 568888999999999998665543
No 178
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.82 E-value=2.7e-08 Score=98.55 Aligned_cols=58 Identities=12% Similarity=0.134 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHh-CCcEEE-EEEEEEEEEeCCeE-EEEEc-CCc--EEEcCEEEECCCCCCc
Q 014377 94 RKLLKSKMLQKCIT-NGVKFH-QAKVIKVIHEESKS-LLICN-DGV--TIQAAVVLDATGFSRC 151 (426)
Q Consensus 94 r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~~~~~-~v~~~-~g~--~i~a~~vV~AdG~~s~ 151 (426)
-..+...|.+.+.+ .|++++ ++.|+++..+++.+ .|... ++. ++.|+.||.|+|..+.
T Consensus 135 G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~~ 198 (513)
T PRK07512 135 GAAIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGIGG 198 (513)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCCcC
Confidence 35678888888876 489999 88999987665543 23332 232 6899999999998764
No 179
>PRK08275 putative oxidoreductase; Provisional
Probab=98.82 E-value=5.3e-08 Score=97.59 Aligned_cols=145 Identities=17% Similarity=0.234 Sum_probs=83.0
Q ss_pred CcCcEEEECchHHHHHHHHHHHHC--CCcEEEEcCCCCCCCCCc-cc--chhHHH-----------h----h-cCc--hh
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEA--GLSVCSIDPSPKLIWPNN-YG--VWVDEF-----------E----A-MDL--LD 64 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~--G~~V~liE~~~~~~~~~~-~g--~~~~~l-----------~----~-~~~--~~ 64 (426)
.++||+|||||+||+++|+.+++. |.+|+|+||.+....... .+ .+...+ + . .++ .+
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~ 87 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQK 87 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHH
Confidence 568999999999999999999986 789999999875311111 01 010000 0 0 000 01
Q ss_pred hhhh---------cc---CCeEEEecCCCcc---ccC--CCc--cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEe-
Q 014377 65 CLDT---------TW---SGAVVHIDDNTKK---DLD--RPY--GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHE- 123 (426)
Q Consensus 65 ~~~~---------~~---~~~~~~~~~~~~~---~~~--~~~--~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~- 123 (426)
.+.. .| -+..+........ ... ..+ ..-.-..+.+.|.+.+.+.|++++ ++.|+++..+
T Consensus 88 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~ 167 (554)
T PRK08275 88 AVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLITNRIMATRLLTDA 167 (554)
T ss_pred HHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCEEEcceEEEEEEEcC
Confidence 0000 00 0111111000000 000 000 001234678888898888999999 9999999876
Q ss_pred CCeEE-EE---EcCCc--EEEcCEEEECCCCCCcc
Q 014377 124 ESKSL-LI---CNDGV--TIQAAVVLDATGFSRCL 152 (426)
Q Consensus 124 ~~~~~-v~---~~~g~--~i~a~~vV~AdG~~s~~ 152 (426)
++.+. |. ..+|+ .+.|+.||.|+|..+.+
T Consensus 168 ~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~ 202 (554)
T PRK08275 168 DGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGRL 202 (554)
T ss_pred CCeEEEEEEEecCCCcEEEEECCEEEECCCCcccc
Confidence 44332 22 33553 58999999999987654
No 180
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.81 E-value=5.5e-09 Score=98.75 Aligned_cols=142 Identities=20% Similarity=0.256 Sum_probs=93.6
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcc----c-----chhHHHhhcCc-h-hhhhhccCCeEE
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNY----G-----VWVDEFEAMDL-L-DCLDTTWSGAVV 75 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~----g-----~~~~~l~~~~~-~-~~~~~~~~~~~~ 75 (426)
+..|||||||||-||+-+|++.||.|.+++|+=......-.-.| | ....+++.+|= . ...+...-...+
T Consensus 2 ~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~ 81 (621)
T COG0445 2 PKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRM 81 (621)
T ss_pred CCCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhh
Confidence 34599999999999999999999999999999765433111111 1 11222333321 0 111111000000
Q ss_pred EecCCCccccCCCccccCHHHHHHHHHHHHHh-CCcEEEEEEEEEEEEeCCe--EEEEEcCCcEEEcCEEEECCCCC
Q 014377 76 HIDDNTKKDLDRPYGRVNRKLLKSKMLQKCIT-NGVKFHQAKVIKVIHEESK--SLLICNDGVTIQAAVVLDATGFS 149 (426)
Q Consensus 76 ~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~-~gv~~~~~~v~~i~~~~~~--~~v~~~~g~~i~a~~vV~AdG~~ 149 (426)
.+..+......+-+++|+..+.+.+.+.+.. .+..++...|+++..+++. +.|++.+|..+.|+.||.++|..
T Consensus 82 -LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTF 157 (621)
T COG0445 82 -LNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTF 157 (621)
T ss_pred -ccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeeccc
Confidence 1222223333444578999999998888887 7888888889898876553 57889999999999999999965
No 181
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.81 E-value=1.8e-08 Score=99.03 Aligned_cols=35 Identities=34% Similarity=0.612 Sum_probs=32.7
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
.+|||+||||||+|+++|..|++.|.+|+|||+..
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 36 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGP 36 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 45999999999999999999999999999999943
No 182
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.81 E-value=2.4e-09 Score=92.91 Aligned_cols=112 Identities=25% Similarity=0.352 Sum_probs=70.0
Q ss_pred cEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhc-CchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAM-DLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
||+||||||||+++|..|++.|++|+|+|+.+...+. ..+.+...+... .......
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------------------- 57 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYN-SGCIPSPLLVEIAPHRHEFL---------------------- 57 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHH-HSHHHHHHHHHHHHHHHHHH----------------------
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccc-cccccccccccccccccccc----------------------
Confidence 7999999999999999999999999999886532110 011110000000 0000000
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeE-----EE---EEcCCcEEEcCEEEECCCCCC
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKS-----LL---ICNDGVTIQAAVVLDATGFSR 150 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~-----~v---~~~~g~~i~a~~vV~AdG~~s 150 (426)
..+ +. .+.+++...+++++ ++++.++......+ .+ ...++.++.+|+||.|+|..+
T Consensus 58 ---~~~-~~-~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~ 122 (201)
T PF07992_consen 58 ---PAR-LF-KLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRP 122 (201)
T ss_dssp ---HHH-HG-HHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEE
T ss_pred ---ccc-cc-ccccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCcccc
Confidence 000 00 44555556789997 88999998776632 22 234567899999999999654
No 183
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.80 E-value=7.7e-08 Score=96.75 Aligned_cols=59 Identities=14% Similarity=0.140 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHhCCcEEE-EEEEEEEEEe-CCeE-EEE---EcCCc--EEEcCEEEECCCCCCcc
Q 014377 94 RKLLKSKMLQKCITNGVKFH-QAKVIKVIHE-ESKS-LLI---CNDGV--TIQAAVVLDATGFSRCL 152 (426)
Q Consensus 94 r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~-~~~~-~v~---~~~g~--~i~a~~vV~AdG~~s~~ 152 (426)
-..+...|.+++.+.|++++ ++.++++..+ ++.+ .|. ..+|+ .+.|+.||.|+|..+.+
T Consensus 142 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 208 (588)
T PRK08958 142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGRI 208 (588)
T ss_pred HHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcccc
Confidence 35678888888888899999 9999999875 4443 232 23553 67899999999987754
No 184
>PLN02268 probable polyamine oxidase
Probab=98.80 E-value=4.5e-06 Score=81.60 Aligned_cols=42 Identities=19% Similarity=0.327 Sum_probs=36.0
Q ss_pred CCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCC
Q 014377 108 NGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFS 149 (426)
Q Consensus 108 ~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~ 149 (426)
.+++++ ++.|+++..+++++.|++.+|+++.||.||.|.-..
T Consensus 209 ~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~~ 251 (435)
T PLN02268 209 KGLDIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPLG 251 (435)
T ss_pred ccCceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCHH
Confidence 355677 999999999888899999999899999999998554
No 185
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.79 E-value=3.2e-09 Score=99.06 Aligned_cols=142 Identities=18% Similarity=0.166 Sum_probs=77.6
Q ss_pred cCcEEEECchHHHHHHHHHHHHCC-CcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEec----CCC--
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAG-LSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHID----DNT-- 81 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G-~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~-- 81 (426)
.+|+|+||.||++|++|..|...+ ++++.+|+.+...|...+-.--..++---+.+++...-|...+.+- ..+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl 81 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRL 81 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-H
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCCh
Confidence 589999999999999999999875 9999999999877765321100111111122333322222111110 000
Q ss_pred ccccCCCccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCC----eEEEEEc----CCcEEEcCEEEECCCCCC
Q 014377 82 KKDLDRPYGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEES----KSLLICN----DGVTIQAAVVLDATGFSR 150 (426)
Q Consensus 82 ~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~----~~~v~~~----~g~~i~a~~vV~AdG~~s 150 (426)
...+...+-...|..+.+.|...+.+-+-.+. +++|++|+..++ .+.|.+. +++++.|+.||.|+|...
T Consensus 82 ~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P 159 (341)
T PF13434_consen 82 YEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQP 159 (341)
T ss_dssp HHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE
T ss_pred hhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCC
Confidence 01111222346899999999888877444344 889999987643 3777773 447899999999999543
No 186
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.78 E-value=4.7e-08 Score=95.91 Aligned_cols=135 Identities=19% Similarity=0.220 Sum_probs=75.0
Q ss_pred cEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHH--HhhcCchhhhhhccCCeEEEecCCCccccCCC
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDE--FEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRP 88 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (426)
+|+||||||+|+++|..+++.|.+|+|||+++..+...+.|+..+. ++.....+...+. ...-+..... ....+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~-~~~g~~~~~~---~~~~~ 77 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKA-NHFGITLPNG---SISID 77 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHH-HhcCccccCC---CCccC
Confidence 7999999999999999999999999999998644333344443321 1211111111110 0000000000 00011
Q ss_pred cccc--CHHH----HHHHHHHHHHhCCcEEEEEEEEEEEEeCCeEEEEEcCC-cEEEcCEEEECCCCCCc
Q 014377 89 YGRV--NRKL----LKSKMLQKCITNGVKFHQAKVIKVIHEESKSLLICNDG-VTIQAAVVLDATGFSRC 151 (426)
Q Consensus 89 ~~~v--~r~~----l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g-~~i~a~~vV~AdG~~s~ 151 (426)
+..+ .+.. +.+.....+...|++++..++..+ +++.+.|...++ .++++|.||.|+|....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~--~~~~v~v~~~~~~~~~~~d~lviATGs~p~ 145 (458)
T PRK06912 78 WKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFE--TDHRVRVEYGDKEEVVDAEQFIIAAGSEPT 145 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEc--cCCEEEEeeCCCcEEEECCEEEEeCCCCCC
Confidence 1111 0111 222233344457899886565443 345566766555 47999999999998764
No 187
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.78 E-value=5.4e-08 Score=97.39 Aligned_cols=58 Identities=24% Similarity=0.295 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCe-EE-EE--E-cCCc--EEEcCEEEECCCCCCcc
Q 014377 95 KLLKSKMLQKCITNGVKFH-QAKVIKVIHEESK-SL-LI--C-NDGV--TIQAAVVLDATGFSRCL 152 (426)
Q Consensus 95 ~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~-~~-v~--~-~~g~--~i~a~~vV~AdG~~s~~ 152 (426)
..+...|.+.+.+.|++++ ++.++++..++++ ++ +. . .+|+ .+.|+.||.|+|..+.+
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~~ 199 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAGQL 199 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCCC
Confidence 5677788888888899999 9999999876554 32 22 2 4553 68999999999987753
No 188
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.78 E-value=1.2e-07 Score=68.76 Aligned_cols=79 Identities=24% Similarity=0.359 Sum_probs=62.8
Q ss_pred cEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCcc
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPYG 90 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (426)
.|+|||||+.|+-+|..|++.|.+|+|+++.+.+. ..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~--~~----------------------------------------- 37 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL--PG----------------------------------------- 37 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS--TT-----------------------------------------
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh--hh-----------------------------------------
Confidence 38999999999999999999999999999987432 00
Q ss_pred ccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCC
Q 014377 91 RVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDG 134 (426)
Q Consensus 91 ~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g 134 (426)
-...+.+.+.+.+++.|++++ ++.+.+++.+++++.|+++||
T Consensus 38 --~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 38 --FDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp --SSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred --cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 012244455666677899999 999999999887777888876
No 189
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.76 E-value=1.1e-06 Score=84.25 Aligned_cols=56 Identities=14% Similarity=0.097 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEE-EEcCC--cEEEcCEEEECCCCC
Q 014377 94 RKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLL-ICNDG--VTIQAAVVLDATGFS 149 (426)
Q Consensus 94 r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v-~~~~g--~~i~a~~vV~AdG~~ 149 (426)
..++.+.|.+.+.+.|++++ +++|++++.+++++.+ ...++ .+++||.||.|+|..
T Consensus 258 G~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 258 GLRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence 34677888888888999999 9999999987776654 34444 468999999999975
No 190
>PRK12839 hypothetical protein; Provisional
Probab=98.75 E-value=1.4e-07 Score=94.60 Aligned_cols=41 Identities=29% Similarity=0.451 Sum_probs=37.3
Q ss_pred CCCCCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCC
Q 014377 4 PSKGLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL 44 (426)
Q Consensus 4 ~~~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~ 44 (426)
++++.++||+|||+|++|+++|+.+++.|.+|+|||+.+..
T Consensus 3 ~~~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~ 43 (572)
T PRK12839 3 PSMTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTC 43 (572)
T ss_pred CCcCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 55777899999999999999999999999999999997654
No 191
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.74 E-value=1.4e-07 Score=95.79 Aligned_cols=58 Identities=24% Similarity=0.324 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeE---EEEE-cCCc--EEEcCEEEECCCCCCcc
Q 014377 95 KLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKS---LLIC-NDGV--TIQAAVVLDATGFSRCL 152 (426)
Q Consensus 95 ~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~---~v~~-~~g~--~i~a~~vV~AdG~~s~~ 152 (426)
..+...|.+.+.+.|++++ ++.++++..+++.+ .+.. .+|+ .+.|+.||.|+|..+.+
T Consensus 158 ~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~~ 222 (657)
T PRK08626 158 HTMLYAVDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYGRI 222 (657)
T ss_pred HHHHHHHHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccCC
Confidence 3456678888888999999 99999999876653 2322 3553 56899999999987754
No 192
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.74 E-value=1.7e-07 Score=93.47 Aligned_cols=60 Identities=18% Similarity=0.232 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHh-CCcEEE-EEEEEEEEEeC------CeE-EEEE---cCCc--EEEcCEEEECCCCCCcccc
Q 014377 95 KLLKSKMLQKCIT-NGVKFH-QAKVIKVIHEE------SKS-LLIC---NDGV--TIQAAVVLDATGFSRCLVQ 154 (426)
Q Consensus 95 ~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~~------~~~-~v~~---~~g~--~i~a~~vV~AdG~~s~~r~ 154 (426)
..+...|.+++.+ .|++++ ++.++++..++ +.+ .|.. .+++ .+.|+.||.|+|..+.+..
T Consensus 138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~~~ 211 (536)
T PRK09077 138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASKVYL 211 (536)
T ss_pred HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCCCCC
Confidence 5677888888876 589999 99999987653 433 2332 2343 6899999999999886544
No 193
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.73 E-value=1.6e-07 Score=94.53 Aligned_cols=57 Identities=21% Similarity=0.290 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEE-EEE--cCCc-EEEc-CEEEECCCCCCc
Q 014377 95 KLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSL-LIC--NDGV-TIQA-AVVLDATGFSRC 151 (426)
Q Consensus 95 ~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~-v~~--~~g~-~i~a-~~vV~AdG~~s~ 151 (426)
..|.+.|.+.+++.|++++ +++|+++..+++.++ |.. .++. +++| +.||.|+|..+.
T Consensus 217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 217 NALVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence 4466788899999999999 999999887666542 332 3332 5889 999999998875
No 194
>PLN02815 L-aspartate oxidase
Probab=98.73 E-value=8.8e-08 Score=95.99 Aligned_cols=147 Identities=20% Similarity=0.224 Sum_probs=82.1
Q ss_pred CCCCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcc---cchh-------------HHHhh-cCc--hhh
Q 014377 5 SKGLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNY---GVWV-------------DEFEA-MDL--LDC 65 (426)
Q Consensus 5 ~~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~---g~~~-------------~~l~~-~~~--~~~ 65 (426)
....++||+|||+|.||+++|+.+++.| +|+|+|+.+...-...+ |.+. +.+.. .++ .+.
T Consensus 25 ~~~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~~l 103 (594)
T PLN02815 25 ESTKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDEET 103 (594)
T ss_pred CcccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcHHH
Confidence 3445789999999999999999999999 99999998754211110 1100 00110 011 011
Q ss_pred hh----h-----cc-CCeEEEecCCC-cc-----ccCCCccc------cCHHHHHHHHHHHHHh-CCcEEE-EEEEEEEE
Q 014377 66 LD----T-----TW-SGAVVHIDDNT-KK-----DLDRPYGR------VNRKLLKSKMLQKCIT-NGVKFH-QAKVIKVI 121 (426)
Q Consensus 66 ~~----~-----~~-~~~~~~~~~~~-~~-----~~~~~~~~------v~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~ 121 (426)
+. + .| ...-+.|.... .. .-...+.. ..-..+...|.+.+.+ .|++++ ++.++++.
T Consensus 104 v~~~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~Li 183 (594)
T PLN02815 104 VRVVCTEGPERVKELIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAIDLL 183 (594)
T ss_pred HHHHHHHHHHHHHHHHHhCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhheee
Confidence 10 0 01 00111121100 00 00000101 1234677788888876 589999 89999988
Q ss_pred EeC-Ce---E-EEEE---cCCc--EEEcCEEEECCCCCCcc
Q 014377 122 HEE-SK---S-LLIC---NDGV--TIQAAVVLDATGFSRCL 152 (426)
Q Consensus 122 ~~~-~~---~-~v~~---~~g~--~i~a~~vV~AdG~~s~~ 152 (426)
.++ ++ + .+.. .+|. .+.|+.||.|+|..+.+
T Consensus 184 ~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 224 (594)
T PLN02815 184 TSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGHI 224 (594)
T ss_pred eecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcceee
Confidence 753 31 2 2332 3453 57899999999977654
No 195
>PRK14727 putative mercuric reductase; Provisional
Probab=98.72 E-value=7.8e-08 Score=94.80 Aligned_cols=37 Identities=30% Similarity=0.465 Sum_probs=34.0
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCC
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPK 43 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 43 (426)
+.++||+||||||+|+.+|..|++.|.+|+|+|++..
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~ 50 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADV 50 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCc
Confidence 4579999999999999999999999999999998743
No 196
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.72 E-value=1.9e-07 Score=94.01 Aligned_cols=39 Identities=31% Similarity=0.589 Sum_probs=35.5
Q ss_pred CCCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCC
Q 014377 6 KGLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL 44 (426)
Q Consensus 6 ~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~ 44 (426)
...++||+|||+|++|+++|+.++++|.+|+|+||.+..
T Consensus 6 ~~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~ 44 (574)
T PRK12842 6 NELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVF 44 (574)
T ss_pred cCCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 345799999999999999999999999999999998754
No 197
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.71 E-value=7.8e-08 Score=95.07 Aligned_cols=34 Identities=35% Similarity=0.632 Sum_probs=31.9
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCC
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPS 41 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~ 41 (426)
..|||+||||||||+.+|..|++.|.+|+|||+.
T Consensus 4 ~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 4 FMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 3699999999999999999999999999999973
No 198
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.70 E-value=1.1e-07 Score=93.50 Aligned_cols=136 Identities=21% Similarity=0.175 Sum_probs=72.5
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCC---------CCCCCcccchhHH--HhhcCchhhhhhccCCeEEEe
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPK---------LIWPNNYGVWVDE--FEAMDLLDCLDTTWSGAVVHI 77 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~---------~~~~~~~g~~~~~--l~~~~~~~~~~~~~~~~~~~~ 77 (426)
+|||+||||||+|..+|..+++.|.+|+|||+... -+.--+.|+.++. +....+.....+ .....+..
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~-~~~~g~~~ 80 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKD-SRNYGWNV 80 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhh-hhhcCccc
Confidence 58999999999999999999999999999997421 1111122333321 111111111110 01100100
Q ss_pred cCCCccccCCCcccc-C-H----HHHHHHHHHHHHhCCcEEEEEEEEEEEEeCCeEEEEEcCC--cEEEcCEEEECCCCC
Q 014377 78 DDNTKKDLDRPYGRV-N-R----KLLKSKMLQKCITNGVKFHQAKVIKVIHEESKSLLICNDG--VTIQAAVVLDATGFS 149 (426)
Q Consensus 78 ~~~~~~~~~~~~~~v-~-r----~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g--~~i~a~~vV~AdG~~ 149 (426)
.. .....+..+ . + ..+.+...+.+...|++++..+..-+ +++.+.|...+| +++.+|.||.|+|..
T Consensus 81 ~~----~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~--~~~~v~v~~~~g~~~~~~~d~lVIATGs~ 154 (484)
T TIGR01438 81 EE----TVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFV--DKHRIKATNKKGKEKIYSAERFLIATGER 154 (484)
T ss_pred CC----CcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEc--CCCEEEEeccCCCceEEEeCEEEEecCCC
Confidence 00 000111111 0 1 12233344455568999884444222 244566654444 479999999999986
Q ss_pred Cc
Q 014377 150 RC 151 (426)
Q Consensus 150 s~ 151 (426)
+.
T Consensus 155 p~ 156 (484)
T TIGR01438 155 PR 156 (484)
T ss_pred CC
Confidence 64
No 199
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.70 E-value=1.9e-07 Score=90.69 Aligned_cols=111 Identities=14% Similarity=0.131 Sum_probs=76.1
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccC
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLD 86 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
.++.+|+|||||.||+.+|..|.+.+.+|+|||+.+...+.. .+.. ..
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~-------~l~~-----~~-------------------- 55 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTP-------LLPQ-----TT-------------------- 55 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhh-------hHHH-----hc--------------------
Confidence 456799999999999999999987789999999886432210 1110 00
Q ss_pred CCccccCHHHHHHHHHHHHHhCCcEEEEEEEEEEEEeCCeEEEEE--------cCCcEEEcCEEEECCCCCCc
Q 014377 87 RPYGRVNRKLLKSKMLQKCITNGVKFHQAKVIKVIHEESKSLLIC--------NDGVTIQAAVVLDATGFSRC 151 (426)
Q Consensus 87 ~~~~~v~r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~--------~~g~~i~a~~vV~AdG~~s~ 151 (426)
.+..+...+...+.+.+...++++...+|++|+.+++.+.+.. .+|.++.+|+||.|+|....
T Consensus 56 --~g~~~~~~~~~~~~~~~~~~~~~~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~ 126 (424)
T PTZ00318 56 --TGTLEFRSICEPVRPALAKLPNRYLRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPN 126 (424)
T ss_pred --ccCCChHHhHHHHHHHhccCCeEEEEEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccC
Confidence 0111222233234444555688877889999988877766632 45678999999999998764
No 200
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.70 E-value=1.6e-07 Score=92.26 Aligned_cols=138 Identities=18% Similarity=0.171 Sum_probs=73.5
Q ss_pred CcCcEEEECchHHHHHHHHHHHHC-CCcEEEEcCC---------CCCCCCCcccchhHH--HhhcCchhhhhhccCCeEE
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEA-GLSVCSIDPS---------PKLIWPNNYGVWVDE--FEAMDLLDCLDTTWSGAVV 75 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~-G~~V~liE~~---------~~~~~~~~~g~~~~~--l~~~~~~~~~~~~~~~~~~ 75 (426)
..|||+||||||+|..+|..+++. |.+|+|||+. ..-+..-++|+.++. +....+.....+. ....+
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~-~~~gi 80 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRES-AGFGW 80 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHh-hccCe
Confidence 469999999999999999999996 9999999974 111222234544332 1221111111111 11111
Q ss_pred EecCCCccccCCCcccc--CH----HHHHHHHHHHHHh-CCcEEEEEEEEEEEEeCCeEEEEEcC------CcEEEcCEE
Q 014377 76 HIDDNTKKDLDRPYGRV--NR----KLLKSKMLQKCIT-NGVKFHQAKVIKVIHEESKSLLICND------GVTIQAAVV 142 (426)
Q Consensus 76 ~~~~~~~~~~~~~~~~v--~r----~~l~~~L~~~~~~-~gv~~~~~~v~~i~~~~~~~~v~~~~------g~~i~a~~v 142 (426)
.... . .....+..+ .+ ..+.+.+.+.+++ .|++++..+.. + .+++.+.|...+ ++++.+|.|
T Consensus 81 ~~~~-~--~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~-f-~~~~~v~V~~~~~~~~~~~~~~~~d~l 155 (486)
T TIGR01423 81 EFDR-S--SVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGA-L-EDKNVVLVRESADPKSAVKERLQAEHI 155 (486)
T ss_pred eccC-C--ccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEE-E-ccCCEEEEeeccCCCCCcceEEECCEE
Confidence 1100 0 001111111 11 2233344444555 48998844432 1 234455665321 247999999
Q ss_pred EECCCCCCc
Q 014377 143 LDATGFSRC 151 (426)
Q Consensus 143 V~AdG~~s~ 151 (426)
|.|+|..+.
T Consensus 156 IIATGs~p~ 164 (486)
T TIGR01423 156 LLATGSWPQ 164 (486)
T ss_pred EEecCCCCC
Confidence 999998764
No 201
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.70 E-value=2.7e-07 Score=92.99 Aligned_cols=37 Identities=35% Similarity=0.431 Sum_probs=33.5
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCC
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL 44 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~ 44 (426)
.++||+|||+|+||+++|+.+++.|.+|+||||.+..
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~ 38 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVK 38 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence 3569999999999999999999999999999987653
No 202
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.69 E-value=9e-08 Score=89.63 Aligned_cols=61 Identities=15% Similarity=0.175 Sum_probs=52.0
Q ss_pred cCHHHHHHHHHHHHHhC-CcEEE-EEEEEEEEEeCCe-EEEEEc-----CCcEEEcCEEEECCCCCCcc
Q 014377 92 VNRKLLKSKMLQKCITN-GVKFH-QAKVIKVIHEESK-SLLICN-----DGVTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 92 v~r~~l~~~L~~~~~~~-gv~~~-~~~v~~i~~~~~~-~~v~~~-----~g~~i~a~~vV~AdG~~s~~ 152 (426)
||-..|.+.|.+.+.+. |++++ +++|+++++.+++ |.|++. +..+++|++|+...|.+|..
T Consensus 178 VnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~ 246 (488)
T PF06039_consen 178 VNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALP 246 (488)
T ss_pred ccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHH
Confidence 78899999999999885 99999 9999999998665 888764 23689999999999998864
No 203
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.68 E-value=1e-07 Score=95.16 Aligned_cols=145 Identities=19% Similarity=0.207 Sum_probs=80.1
Q ss_pred CCCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcc--c-ch------------h-HHHhhc-Cc--hhhh
Q 014377 6 KGLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNY--G-VW------------V-DEFEAM-DL--LDCL 66 (426)
Q Consensus 6 ~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~--g-~~------------~-~~l~~~-~~--~~~~ 66 (426)
.+.++||+|||+|.||+++|+.++ .|.+|+|+||.+..+....+ | .+ . +.++.. ++ .+.+
T Consensus 6 ~~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~~d~~lv 84 (553)
T PRK07395 6 LPSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLCDPEAV 84 (553)
T ss_pred ccccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCchhhhcccceecccCCCCHHHHHHHHHHhcCCCCCHHHH
Confidence 456799999999999999999986 49999999998754211110 1 10 0 001110 00 0000
Q ss_pred ----hh-----cc-CCeEEEecCCCc-c----ccCCCcc---cc---CHHHHHHHHHHHHHh-CCcEEE-EEEEEEEEEe
Q 014377 67 ----DT-----TW-SGAVVHIDDNTK-K----DLDRPYG---RV---NRKLLKSKMLQKCIT-NGVKFH-QAKVIKVIHE 123 (426)
Q Consensus 67 ----~~-----~~-~~~~~~~~~~~~-~----~~~~~~~---~v---~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~ 123 (426)
.. .| ...-+.|..... . ....... +. .-..+...|.+.+.+ .|++++ ++.++++..+
T Consensus 85 ~~~~~~s~~~i~wL~~~Gv~f~~~~~~~~~~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~ 164 (553)
T PRK07395 85 RFLVEQAPEAIASLVEMGVAFDRHGQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIISQALALSLWLE 164 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCeeecCCCceeeecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcEEEECcChhhheec
Confidence 00 01 001111111000 0 0000000 01 235677788888765 599999 8999999876
Q ss_pred C--CeE-EEE-EcCCc--EEEcCEEEECCCCCCc
Q 014377 124 E--SKS-LLI-CNDGV--TIQAAVVLDATGFSRC 151 (426)
Q Consensus 124 ~--~~~-~v~-~~~g~--~i~a~~vV~AdG~~s~ 151 (426)
+ +.+ .|. ..+|. .+.|+-||.|+|..+.
T Consensus 165 ~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~~~ 198 (553)
T PRK07395 165 PETGRCQGISLLYQGQITWLRAGAVILATGGGGQ 198 (553)
T ss_pred CCCCEEEEEEEEECCeEEEEEcCEEEEcCCCCcc
Confidence 3 333 222 23453 4789999999998654
No 204
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.67 E-value=2.8e-07 Score=92.28 Aligned_cols=38 Identities=26% Similarity=0.467 Sum_probs=34.6
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCC
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL 44 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~ 44 (426)
..++||+|||+|++|+++|+.+++.|.+|+|||+.+..
T Consensus 4 d~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~ 41 (557)
T PRK12844 4 DETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKV 41 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 34799999999999999999999999999999997653
No 205
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.67 E-value=4.8e-07 Score=85.59 Aligned_cols=60 Identities=12% Similarity=0.109 Sum_probs=50.5
Q ss_pred cCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEE-EEEcCC--cEEEcCEEEECCCCC-Cc
Q 014377 92 VNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSL-LICNDG--VTIQAAVVLDATGFS-RC 151 (426)
Q Consensus 92 v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~-v~~~~g--~~i~a~~vV~AdG~~-s~ 151 (426)
+.-.+|.+.|.+.+++.|++++ +++|.++..++++++ |.+.++ .+++||.+|.|+|.+ |.
T Consensus 260 v~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~ 324 (419)
T TIGR03378 260 LLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSN 324 (419)
T ss_pred CcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCH
Confidence 6678899999999999999998 779999998887765 444555 489999999999999 74
No 206
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.65 E-value=1.3e-06 Score=82.32 Aligned_cols=191 Identities=15% Similarity=0.115 Sum_probs=108.0
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEE-EEEcCCcEEEcCEEEECCCCCCccccccCCCCCceeeEE
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSL-LICNDGVTIQAAVVLDATGFSRCLVQYDKPYNPGYQVAY 167 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~-v~~~~g~~i~a~~vV~AdG~~s~~r~~~~~~~~~~~~~~ 167 (426)
+.++...+...|.+.+.+.|++++ +++|++++.+++.+. |.+.+| +++||.||.|+|.++...-.. ......
T Consensus 132 g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~~l~~~-----~~~~~~ 205 (337)
T TIGR02352 132 AHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAGELLPL-----PLRPVR 205 (337)
T ss_pred ceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhhhcccC-----CccccC
Confidence 468999999999999999999999 899999998777654 566555 899999999999987532111 111122
Q ss_pred EEEEEeecCCCCC-CceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeEEEecccCcCCC--CCChHHHHHHHHH
Q 014377 168 GILAEVEEHPFDL-DKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETSLVARP--GVPMKDIQERMVA 244 (426)
Q Consensus 168 g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~ 244 (426)
+..+.++...... +..... . .. ....|+.|..++++.++.+...... ..+.+ ..+.+.+
T Consensus 206 g~~~~~~~~~~~~~~~~~~~----~-------~~------~~~~y~~p~~~g~~~iG~~~~~~~~~~~~~~~-~~~~l~~ 267 (337)
T TIGR02352 206 GQPLRLEAPAVPLLNRPLRA----V-------VY------GRRVYIVPRRDGRLVVGATMEESGFDTTPTLG-GIKELLR 267 (337)
T ss_pred ceEEEeeccccccCCcccce----E-------EE------cCCEEEEEcCCCeEEEEEeccccCccCCCCHH-HHHHHHH
Confidence 3333332211100 000000 0 00 1236778988888877765432221 12222 2333333
Q ss_pred HHhhcCCc--cccccccceEeecCCCCCCCCCCceeEeeccCC-----CCCCCCcHHHHHHHHhcHHHHHHHH
Q 014377 245 RLKHLGIK--VRSIEEDEHCVIPMGGPLPVLPQRVVGIGGTAG-----MVHPSTGYMVARTLAAAPIVANAIV 310 (426)
Q Consensus 245 ~~~~~~~~--~~~~~~~~~~~~p~~~~~~~~~~~v~liGdAa~-----~~~P~~G~G~~~a~~~a~~la~~i~ 310 (426)
.+.+.-.. ..++... +.+.++...|+.+++|.... ...-++|.|+..+...|..+|+.|.
T Consensus 268 ~~~~~~P~l~~~~~~~~------~~g~r~~t~D~~piig~~~~~~~~~~~~g~~g~G~~~~p~~g~~la~~i~ 334 (337)
T TIGR02352 268 DAYTILPALKEARLLET------WAGLRPGTPDNLPYIGEHPEDRRLLIATGHYRNGILLAPATAEVIADLIL 334 (337)
T ss_pred HHHHhCCCcccCcHHHh------eecCCCCCCCCCCEeCccCCCCCEEEEcccccCceehhhHHHHHHHHHHh
Confidence 33332111 1122222 23444445677788885432 2233566677777776777776665
No 207
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.64 E-value=2.4e-07 Score=88.27 Aligned_cols=106 Identities=16% Similarity=0.245 Sum_probs=71.4
Q ss_pred cEEEECchHHHHHHHHHHHH---CCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCC
Q 014377 11 DLAVVGGGPAGLAVAQQVSE---AGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDR 87 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~---~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (426)
+|+|||||+||+.+|..|.+ .+.+|+|||+.+...+... + . ..+.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~---~----~-----~~~~-------------------- 48 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGM---L----P-----GMIA-------------------- 48 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccch---h----h-----HHHh--------------------
Confidence 48999999999999999964 3789999998864322110 0 0 0000
Q ss_pred CccccCHHHHHHHHHHHHHhCCcEEEEEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCcc
Q 014377 88 PYGRVNRKLLKSKMLQKCITNGVKFHQAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 88 ~~~~v~r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~~ 152 (426)
+.++...+...+.+.+.+.|++++..+|++++.+++ +|.+.+|+++++|+||.|+|.....
T Consensus 49 --g~~~~~~~~~~~~~~~~~~gv~~~~~~v~~id~~~~--~V~~~~g~~~~yD~LviAtG~~~~~ 109 (364)
T TIGR03169 49 --GHYSLDEIRIDLRRLARQAGARFVIAEATGIDPDRR--KVLLANRPPLSYDVLSLDVGSTTPL 109 (364)
T ss_pred --eeCCHHHhcccHHHHHHhcCCEEEEEEEEEEecccC--EEEECCCCcccccEEEEccCCCCCC
Confidence 001111222223344455799988778999987655 5677888889999999999987654
No 208
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.63 E-value=3.8e-07 Score=91.76 Aligned_cols=39 Identities=28% Similarity=0.438 Sum_probs=35.4
Q ss_pred CCCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCC
Q 014377 6 KGLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL 44 (426)
Q Consensus 6 ~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~ 44 (426)
...++||||||+|+||+++|+.+++.|.+|+|+|+.+..
T Consensus 8 ~~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~ 46 (584)
T PRK12835 8 FDREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHF 46 (584)
T ss_pred ccCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 345799999999999999999999999999999998754
No 209
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.63 E-value=2.5e-07 Score=86.33 Aligned_cols=38 Identities=29% Similarity=0.505 Sum_probs=35.1
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCC
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL 44 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~ 44 (426)
+...||||||+|.+||++|+.|.+.|++|+|+|.++..
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~ 42 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRV 42 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCc
Confidence 56789999999999999999999999999999987665
No 210
>PRK07846 mycothione reductase; Reviewed
Probab=98.62 E-value=1.3e-07 Score=92.31 Aligned_cols=132 Identities=15% Similarity=0.083 Sum_probs=71.0
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHH--HhhcCchhhhhhccCCeEEEecCCCccccC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDE--FEAMDLLDCLDTTWSGAVVHIDDNTKKDLD 86 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
+|||+||||||+|..+|.. +.|.+|+|||++...+.--++|+.++. +....+.....+. +...+.... ..
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~-~~~g~~~~~-----~~ 72 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREA-ARLGVDAEL-----DG 72 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHH-HhCCccCCC-----Cc
Confidence 4899999999999988866 459999999997654444455664432 1111111111110 000000000 00
Q ss_pred CCcccc-CH-HHHHHHH-----HHH-HHhCCcEEEEEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCcc
Q 014377 87 RPYGRV-NR-KLLKSKM-----LQK-CITNGVKFHQAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 87 ~~~~~v-~r-~~l~~~L-----~~~-~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~~ 152 (426)
..+..+ ++ ....+.+ ... +...|++++..+..-+ ++. +|++.+|+++++|.||.|+|.....
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~--~~~--~V~v~~g~~~~~d~lViATGs~p~~ 142 (451)
T PRK07846 73 VRWPDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFI--GPK--TLRTGDGEEITADQVVIAAGSRPVI 142 (451)
T ss_pred CCHHHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEe--cCC--EEEECCCCEEEeCEEEEcCCCCCCC
Confidence 111111 11 1111111 122 4457899884444333 233 4555677789999999999987643
No 211
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.62 E-value=8.5e-07 Score=88.94 Aligned_cols=36 Identities=36% Similarity=0.558 Sum_probs=34.1
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
..++||||||+|.||+++|+.+++.|.+|+|||+.+
T Consensus 2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 2 AMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred CccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 467999999999999999999999999999999988
No 212
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.61 E-value=1.6e-06 Score=86.95 Aligned_cols=38 Identities=32% Similarity=0.523 Sum_probs=34.9
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCC
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL 44 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~ 44 (426)
..++||+|||+|++|+++|+.+++.|.+|+|||+.+..
T Consensus 5 ~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~ 42 (557)
T PRK07843 5 VQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHY 42 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 45799999999999999999999999999999998653
No 213
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.61 E-value=4.8e-07 Score=90.46 Aligned_cols=38 Identities=42% Similarity=0.602 Sum_probs=34.4
Q ss_pred CCCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCC
Q 014377 6 KGLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL 44 (426)
Q Consensus 6 ~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~ 44 (426)
-+.++||||||+| +|+++|+.+++.|.+|+||||.+..
T Consensus 13 ~d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~ 50 (564)
T PRK12845 13 RDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYV 50 (564)
T ss_pred CCceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCC
Confidence 3458999999999 8999999999999999999998654
No 214
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.60 E-value=3.4e-06 Score=78.57 Aligned_cols=87 Identities=15% Similarity=0.030 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCe-EEEEEcCCcEEEcCEEEECCCCCCcc-----ccccCCCCCceee
Q 014377 93 NRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESK-SLLICNDGVTIQAAVVLDATGFSRCL-----VQYDKPYNPGYQV 165 (426)
Q Consensus 93 ~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~-~~v~~~~g~~i~a~~vV~AdG~~s~~-----r~~~~~~~~~~~~ 165 (426)
.-....+.+.+.+.+.|++++ +++|.+++..++. ..|.+++|.++.+|+||.|-|..+.- .+..+.....-..
T Consensus 171 ~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~dw~~~l~~K~Gv~~~~~p~ 250 (486)
T COG2509 171 ILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGRDWFEMLHKKLGVKMRAKPF 250 (486)
T ss_pred chHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcchHHHHHHHHHhcCcccccCCe
Confidence 346777889999999999999 9999999988764 56788999999999999999987641 1111222222245
Q ss_pred EEEEEEEeecCCCC
Q 014377 166 AYGILAEVEEHPFD 179 (426)
Q Consensus 166 ~~g~~~~~~~~~~~ 179 (426)
..|+.++.+....+
T Consensus 251 dIGVRvE~p~~vmd 264 (486)
T COG2509 251 DIGVRVEHPQSVMD 264 (486)
T ss_pred eEEEEEecchHhhC
Confidence 67777776654333
No 215
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.60 E-value=3e-07 Score=92.83 Aligned_cols=46 Identities=26% Similarity=0.202 Sum_probs=36.8
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCcEEEEcCC--CCCCCCCcccchh
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPS--PKLIWPNNYGVWV 54 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~--~~~~~~~~~g~~~ 54 (426)
+|||+||||||+|..+|..+++.|.+|+|||++ ..-+.-.++|+..
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiP 163 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIP 163 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcc
Confidence 689999999999999999999999999999975 2223333445543
No 216
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.59 E-value=6.1e-07 Score=85.85 Aligned_cols=98 Identities=21% Similarity=0.343 Sum_probs=77.4
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
-+|+|||||+.|+-+|..|++.|.+|+++|+.+... +.
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l-~~----------------------------------------- 179 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLL-AS----------------------------------------- 179 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCccc-ch-----------------------------------------
Confidence 479999999999999999999999999999875321 00
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRC 151 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~ 151 (426)
.. ...+...+.+.+.+.|++++ ++++++++.+++.+.+.+.+|+++.||+||.|+|..+.
T Consensus 180 -~~-~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~ 240 (377)
T PRK04965 180 -LM-PPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPN 240 (377)
T ss_pred -hC-CHHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcc
Confidence 00 01233445566667899998 89999998877777888899999999999999998663
No 217
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.59 E-value=6e-08 Score=67.49 Aligned_cols=31 Identities=32% Similarity=0.595 Sum_probs=28.5
Q ss_pred EECchHHHHHHHHHHHHCCCcEEEEcCCCCC
Q 014377 14 VVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL 44 (426)
Q Consensus 14 IvGgG~aGl~~A~~La~~G~~V~liE~~~~~ 44 (426)
|||||++|+++|+.|++.|++|+|+|+++.+
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCccc
Confidence 8999999999999999999999999999764
No 218
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.57 E-value=1e-06 Score=93.98 Aligned_cols=110 Identities=24% Similarity=0.256 Sum_probs=70.0
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCC
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDR 87 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (426)
..+||+||||||||+++|+.|++.|++|+|+|+.+..+ |.+.. ... ..
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~G-----G~~~~---------------~~~--~~---------- 209 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAG-----GSLLS---------------EAE--TI---------- 209 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCC-----Ceeec---------------ccc--cc----------
Confidence 35899999999999999999999999999999986532 11100 000 00
Q ss_pred CccccCHHHHHHHHHHHHHhC-CcEEE-EEEEEEEEEeCCeEEEE-E--------cC---C--cEEEcCEEEECCCCCCc
Q 014377 88 PYGRVNRKLLKSKMLQKCITN-GVKFH-QAKVIKVIHEESKSLLI-C--------ND---G--VTIQAAVVLDATGFSRC 151 (426)
Q Consensus 88 ~~~~v~r~~l~~~L~~~~~~~-gv~~~-~~~v~~i~~~~~~~~v~-~--------~~---g--~~i~a~~vV~AdG~~s~ 151 (426)
...+...+...+.+++.+. +++++ +++|.++........+. . .. + .++.+|.||.|+|+...
T Consensus 210 --~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r 287 (985)
T TIGR01372 210 --DGKPAADWAAATVAELTAMPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHER 287 (985)
T ss_pred --CCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCc
Confidence 0122334545566666554 58988 88888775321111111 0 00 1 26899999999998753
No 219
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.57 E-value=9.3e-07 Score=89.07 Aligned_cols=57 Identities=25% Similarity=0.242 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEE-EEEc-CCc--EEEc-CEEEECCCCCCcc
Q 014377 96 LLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSL-LICN-DGV--TIQA-AVVLDATGFSRCL 152 (426)
Q Consensus 96 ~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~-v~~~-~g~--~i~a-~~vV~AdG~~s~~ 152 (426)
.+...|.+.+++.|++++ +++|+++..+++.++ |... +++ ++.| +.||.|+|..+..
T Consensus 222 ~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n 284 (578)
T PRK12843 222 ALIGRLLYSLRARGVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGFNRH 284 (578)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCcccC
Confidence 466778888888999999 999999887655443 4333 343 5776 7899999988774
No 220
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.57 E-value=8.7e-07 Score=85.35 Aligned_cols=108 Identities=16% Similarity=0.173 Sum_probs=70.7
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCC--cEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGL--SVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLD 86 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~--~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
..+|+|||||+||+.+|..|++.|. +|+|+++.+...+.+.. .. . ..+..... . ..
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~-l~-~--------~~~~~~~~---------~-~~-- 60 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPP-LS-K--------SMLLEDSP---------Q-LQ-- 60 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCC-CC-H--------HHHCCCCc---------c-cc--
Confidence 3579999999999999999999876 79999988654332210 00 0 00000000 0 00
Q ss_pred CCccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCc
Q 014377 87 RPYGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRC 151 (426)
Q Consensus 87 ~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~ 151 (426)
. .... +...+.|++++ ++.|+.+..+.. .|.+.+|+++.+|.||.|+|....
T Consensus 61 --~-~~~~--------~~~~~~~i~~~~g~~V~~id~~~~--~v~~~~g~~~~yd~LViATGs~~~ 113 (396)
T PRK09754 61 --Q-VLPA--------NWWQENNVHLHSGVTIKTLGRDTR--ELVLTNGESWHWDQLFIATGAAAR 113 (396)
T ss_pred --c-cCCH--------HHHHHCCCEEEcCCEEEEEECCCC--EEEECCCCEEEcCEEEEccCCCCC
Confidence 0 0011 11234789998 888988876543 466678889999999999998864
No 221
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.56 E-value=6.2e-07 Score=87.88 Aligned_cols=110 Identities=15% Similarity=0.283 Sum_probs=70.6
Q ss_pred cEEEECchHHHHHHHHHHHHCC--CcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCC
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAG--LSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRP 88 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G--~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (426)
+|+|||||+||+++|..|++.+ .+|+|||+.+...+.. + ++ +. + ... ...
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~-~----------~~--------~~--~-~~~----~~~-- 53 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGA-C----------GL--------PY--F-VGG----FFD-- 53 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeec-C----------CC--------ce--E-ecc----ccC--
Confidence 6999999999999999999875 5899999987532210 0 00 00 0 000 000
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEE-cCCcEEE--cCEEEECCCCCCcc
Q 014377 89 YGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLIC-NDGVTIQ--AAVVLDATGFSRCL 152 (426)
Q Consensus 89 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~-~~g~~i~--a~~vV~AdG~~s~~ 152 (426)
....+.....+.+.+.|++++ +++|+++..+++.+.+.. .++.+++ +|.||.|+|.....
T Consensus 54 ----~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~ 117 (444)
T PRK09564 54 ----DPNTMIARTPEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPII 117 (444)
T ss_pred ----CHHHhhcCCHHHHHHCCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCC
Confidence 011111112233445799988 899999988777666654 2355666 99999999987643
No 222
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.53 E-value=3.6e-07 Score=96.20 Aligned_cols=98 Identities=23% Similarity=0.287 Sum_probs=65.2
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCC
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDR 87 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (426)
...+|+|||||||||++|..|++.|++|+|||+.+..+ |.. ..|+ | .
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~G-----G~l-----~yGI--------P-------~-------- 351 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLG-----GVL-----RYGI--------P-------E-------- 351 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCC-----ceE-----EccC--------C-------C--------
Confidence 46789999999999999999999999999999976432 111 0000 1 0
Q ss_pred CccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCC
Q 014377 88 PYGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFS 149 (426)
Q Consensus 88 ~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~ 149 (426)
| .+.+. +.+...+.+.+.|++++ ++.+- ..+++.+.....+|.||.|+|++
T Consensus 352 -~-rlp~~-vi~~~i~~l~~~Gv~f~~n~~vG--------~dit~~~l~~~~yDAV~LAtGA~ 403 (944)
T PRK12779 352 -F-RLPNQ-LIDDVVEKIKLLGGRFVKNFVVG--------KTATLEDLKAAGFWKIFVGTGAG 403 (944)
T ss_pred -C-cChHH-HHHHHHHHHHhhcCeEEEeEEec--------cEEeHHHhccccCCEEEEeCCCC
Confidence 1 12222 23333455666899987 65542 12444555455789999999986
No 223
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.53 E-value=1.1e-06 Score=92.83 Aligned_cols=37 Identities=32% Similarity=0.478 Sum_probs=34.2
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCC
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPK 43 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 43 (426)
..++||+|||||.||+++|+.+++.|.+|+|+||.+.
T Consensus 11 ~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 11 RLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eeecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 4568999999999999999999999999999999764
No 224
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.53 E-value=8.3e-07 Score=89.58 Aligned_cols=31 Identities=32% Similarity=0.348 Sum_probs=29.9
Q ss_pred EEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 12 LAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 12 ViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
|+|||+|+||+++|+.+++.|.+|+|+||.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence 7999999999999999999999999999987
No 225
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.53 E-value=1.1e-06 Score=85.57 Aligned_cols=59 Identities=15% Similarity=0.103 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhCCcEEE-EEEEEEEEEe--CCeEE-EEEc-CCcEEEcCEEEECCCCCCcc
Q 014377 94 RKLLKSKMLQKCITNGVKFH-QAKVIKVIHE--ESKSL-LICN-DGVTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 94 r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~--~~~~~-v~~~-~g~~i~a~~vV~AdG~~s~~ 152 (426)
-..+.+.|.+.+++.|++++ +++|+++..+ ++.+. |... ++.++.||.||.|+|..+.-
T Consensus 122 g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n 185 (432)
T TIGR02485 122 GKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGAN 185 (432)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccC
Confidence 35688889999999999999 9999999876 33332 3433 34589999999999977653
No 226
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.53 E-value=3.2e-07 Score=86.60 Aligned_cols=38 Identities=21% Similarity=0.404 Sum_probs=34.7
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCC
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL 44 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~ 44 (426)
..+|||+|||||-.|.=+|+-.+-+|++|.|+|++...
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~ 102 (680)
T KOG0042|consen 65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFA 102 (680)
T ss_pred CCcccEEEECCCccCcceeehhhcccceeEEEeccccc
Confidence 34699999999999999999999999999999998764
No 227
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.53 E-value=4.5e-07 Score=83.76 Aligned_cols=35 Identities=37% Similarity=0.646 Sum_probs=30.3
Q ss_pred CcEEEECchHHHHHHHHHHHHCC-CcEEEEcCCCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAG-LSVCSIDPSPKL 44 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G-~~V~liE~~~~~ 44 (426)
||+||||+|++|+.+|.+|++.| .+|+|+|+.+..
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~ 36 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRY 36 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSC
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccC
Confidence 79999999999999999999987 799999998653
No 228
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.53 E-value=2e-06 Score=76.59 Aligned_cols=38 Identities=39% Similarity=0.611 Sum_probs=34.8
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCC
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL 44 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~ 44 (426)
+.++||||||+|+|||.+|..|+.+|.+|+++|+....
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeq 40 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQ 40 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEcccccc
Confidence 45799999999999999999999999999999987654
No 229
>PRK12831 putative oxidoreductase; Provisional
Probab=98.52 E-value=2.4e-07 Score=90.66 Aligned_cols=100 Identities=23% Similarity=0.305 Sum_probs=64.0
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccC
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLD 86 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
.+..||+||||||||+++|..|++.|++|+|+|+.+.++ |.+. .++ +.
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~G-----G~l~-----~gi--------p~-------------- 185 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPG-----GVLV-----YGI--------PE-------------- 185 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCC-----Ceee-----ecC--------CC--------------
Confidence 456899999999999999999999999999999876432 1110 000 10
Q ss_pred CCccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCC-cEEEcCEEEECCCCC
Q 014377 87 RPYGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDG-VTIQAAVVLDATGFS 149 (426)
Q Consensus 87 ~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g-~~i~a~~vV~AdG~~ 149 (426)
+ .+....+.....+.+.+.|++++ ++.+.. .+...+. +.+.+|.||.|+|.+
T Consensus 186 --~-~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~--------~v~~~~~~~~~~~d~viiAtGa~ 239 (464)
T PRK12831 186 --F-RLPKETVVKKEIENIKKLGVKIETNVVVGK--------TVTIDELLEEEGFDAVFIGSGAG 239 (464)
T ss_pred --c-cCCccHHHHHHHHHHHHcCCEEEcCCEECC--------cCCHHHHHhccCCCEEEEeCCCC
Confidence 0 11112233334456667899988 665421 1222232 235689999999984
No 230
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.51 E-value=1.2e-06 Score=84.39 Aligned_cols=97 Identities=24% Similarity=0.336 Sum_probs=75.5
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.. +
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~-~----------------------------------------- 182 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMG-R----------------------------------------- 182 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchh-h-----------------------------------------
Confidence 4699999999999999999999999999998753210 0
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRC 151 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~ 151 (426)
.....+.+.+.+.+.+.|++++ ++++++++. ++.+.+.+.+|+++.||+||.|.|..+.
T Consensus 183 --~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~~pn 242 (396)
T PRK09754 183 --NAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGISAN 242 (396)
T ss_pred --hcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCCChh
Confidence 0011233455666667899999 899999876 4566788889999999999999998654
No 231
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.51 E-value=4.2e-07 Score=88.94 Aligned_cols=131 Identities=12% Similarity=0.063 Sum_probs=69.3
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHH--HhhcCchhhhhhccCCeEEEecCCCccccC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDE--FEAMDLLDCLDTTWSGAVVHIDDNTKKDLD 86 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
+|||+|||+||+|..+|.. +.|.+|+|||++..-+..-++|+.++. +....+...+.+. ....+.... . .
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~-~~~g~~~~~---~--~ 73 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIGES-ARLGIDAEI---D--S 73 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCCCCCCeeeccCccchHHHHHHHHHHHHHHHh-hccCeeCCC---C--c
Confidence 5999999999999888644 469999999997654444455665442 1111111111110 100011000 0 0
Q ss_pred CCcccc-CHH-H-HHHHHH-----H--HHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCcc
Q 014377 87 RPYGRV-NRK-L-LKSKML-----Q--KCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 87 ~~~~~v-~r~-~-l~~~L~-----~--~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~~ 152 (426)
..+..+ .+. . ..+.+. . ..++.|++++ ++.+.. ++ .+|.+.+|+++++|.||.|+|.....
T Consensus 74 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~---~~--~~V~~~~g~~~~~d~lIiATGs~p~~ 145 (452)
T TIGR03452 74 VRWPDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV---GP--RTLRTGDGEEITGDQIVIAAGSRPYI 145 (452)
T ss_pred cCHHHHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEe---cC--CEEEECCCcEEEeCEEEEEECCCCCC
Confidence 111111 111 0 111111 1 1123789988 443222 22 34556677889999999999987643
No 232
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.51 E-value=3.9e-06 Score=83.47 Aligned_cols=37 Identities=35% Similarity=0.525 Sum_probs=34.0
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCC
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL 44 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~ 44 (426)
+.++||||||+| +|+++|+.+++.|.+|+||||.+..
T Consensus 5 d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~ 41 (513)
T PRK12837 5 DEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKF 41 (513)
T ss_pred CCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCC
Confidence 358999999999 9999999999999999999998754
No 233
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.50 E-value=1.1e-06 Score=78.24 Aligned_cols=56 Identities=13% Similarity=0.124 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEE-EEEcCC--cEEEcCEEEECCCC
Q 014377 93 NRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSL-LICNDG--VTIQAAVVLDATGF 148 (426)
Q Consensus 93 ~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~-v~~~~g--~~i~a~~vV~AdG~ 148 (426)
---++.+.|.++.++.|..+. +.+|.+.+..+++++ |.+.+. ..+++|..|.|+|.
T Consensus 256 lGiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGs 315 (421)
T COG3075 256 LGIRLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGS 315 (421)
T ss_pred hhhhHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeeccc
Confidence 345677788888888888888 889999999888764 556655 35789999999995
No 234
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=2.6e-07 Score=82.46 Aligned_cols=112 Identities=21% Similarity=0.289 Sum_probs=81.3
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccC
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLD 86 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
...|||+||||||||.++|.+.+|.|++.-|+-.+ +|. ..++.++++.++.
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aer--------fGG--QvldT~~IENfIs------------------- 259 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAER--------FGG--QVLDTMGIENFIS------------------- 259 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhhhhh--------hCC--eeccccchhheec-------------------
Confidence 45799999999999999999999999988666221 111 1223333333321
Q ss_pred CCccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEe---CCeEEEEEcCCcEEEcCEEEECCCCC
Q 014377 87 RPYGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHE---ESKSLLICNDGVTIQAAVVLDATGFS 149 (426)
Q Consensus 87 ~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~---~~~~~v~~~~g~~i~a~~vV~AdG~~ 149 (426)
-+ ...-.+|...|.++..+..+++. ..++++++.. ++-..|++++|-.++++-||.++|++
T Consensus 260 v~--~teGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 260 VP--ETEGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred cc--cccchHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence 11 12345678888888888888888 6677777764 44578999999999999999999975
No 235
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.49 E-value=4.5e-07 Score=79.99 Aligned_cols=63 Identities=10% Similarity=0.111 Sum_probs=51.0
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCe-----EEEEEcCCcEEEcCEEEECCCCCCcc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESK-----SLLICNDGVTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~-----~~v~~~~g~~i~a~~vV~AdG~~s~~ 152 (426)
+.+|...+...+.+.....|-++. +-++.++.++.+. ++|.-..+++++++.||-|.|..|..
T Consensus 191 GIvD~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr 259 (453)
T KOG2665|consen 191 GIVDWGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDR 259 (453)
T ss_pred ceeehHHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhH
Confidence 468989999999999888888888 8899999876542 45555567899999999999988754
No 236
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.49 E-value=3.1e-06 Score=82.88 Aligned_cols=37 Identities=19% Similarity=0.165 Sum_probs=33.4
Q ss_pred CcCcEEEECchHHHHHHHHHHHHC----CCcEEEEcCCCCC
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEA----GLSVCSIDPSPKL 44 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~----G~~V~liE~~~~~ 44 (426)
.+.+|+|||||+|||++|.+|++. |.+|+|+|+.+.+
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~ 61 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVP 61 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCC
Confidence 457899999999999999999985 7899999998865
No 237
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.47 E-value=9.1e-07 Score=92.15 Aligned_cols=97 Identities=25% Similarity=0.310 Sum_probs=63.1
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCC
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDR 87 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (426)
...+|+||||||||+++|..|++.|++|+|+|+.+.++ |.. .+..| ..
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~G-----G~l-------------r~~IP-------~~------- 585 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAG-----GVV-------------KNIIP-------QF------- 585 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccC-----cce-------------eeecc-------cc-------
Confidence 45689999999999999999999999999999986432 111 00001 00
Q ss_pred CccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCC
Q 014377 88 PYGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSR 150 (426)
Q Consensus 88 ~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s 150 (426)
.+.+..+. ...+.+.+.|++++ ++.+ ++. +.+.....+|.||.|+|++.
T Consensus 586 ---Rlp~evL~-~die~l~~~GVe~~~gt~V-di~---------le~L~~~gYDaVILATGA~~ 635 (1019)
T PRK09853 586 ---RIPAELIQ-HDIEFVKAHGVKFEFGCSP-DLT---------VEQLKNEGYDYVVVAIGADK 635 (1019)
T ss_pred ---cccHHHHH-HHHHHHHHcCCEEEeCcee-EEE---------hhhheeccCCEEEECcCCCC
Confidence 11222222 23355566799988 7665 222 22233456899999999874
No 238
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.45 E-value=1.9e-06 Score=93.38 Aligned_cols=38 Identities=34% Similarity=0.517 Sum_probs=34.9
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCC
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL 44 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~ 44 (426)
..++||||||+|.||+++|+.+++.|.+|+|+||.+..
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~ 444 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKL 444 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCC
Confidence 45689999999999999999999999999999998754
No 239
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=2.6e-06 Score=71.52 Aligned_cols=119 Identities=21% Similarity=0.156 Sum_probs=85.5
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCC
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDR 87 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (426)
..-.|+|||.|||+-.+|+++++..++-+|+|----... -++..+.....-......
T Consensus 7 h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i-----------------------~pGGQLtTTT~veNfPGF 63 (322)
T KOG0404|consen 7 HNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGI-----------------------APGGQLTTTTDVENFPGF 63 (322)
T ss_pred eeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCc-----------------------CCCceeeeeeccccCCCC
Confidence 445899999999999999999999999999995321100 122222221111122223
Q ss_pred CccccCHHHHHHHHHHHHHhCCcEEEEEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCc
Q 014377 88 PYGRVNRKLLKSKMLQKCITNGVKFHQAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRC 151 (426)
Q Consensus 88 ~~~~v~r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~ 151 (426)
|-+ |.-..|.+.+++++.+.|.+++...|.++..+...+.+.+ |.+.+.||.||.|+|+...
T Consensus 64 Pdg-i~G~~l~d~mrkqs~r~Gt~i~tEtVskv~~sskpF~l~t-d~~~v~~~avI~atGAsAk 125 (322)
T KOG0404|consen 64 PDG-ITGPELMDKMRKQSERFGTEIITETVSKVDLSSKPFKLWT-DARPVTADAVILATGASAK 125 (322)
T ss_pred Ccc-cccHHHHHHHHHHHHhhcceeeeeehhhccccCCCeEEEe-cCCceeeeeEEEeccccee
Confidence 333 5667888899999999999998778888888777777766 5567999999999998653
No 240
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.43 E-value=3e-06 Score=83.45 Aligned_cols=98 Identities=21% Similarity=0.283 Sum_probs=77.6
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
-.|+|||||+.|+-+|..|++.|.+|+++|+.+... +
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------~------------------ 212 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL-------------------------S------------------ 212 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------C------------------
Confidence 479999999999999999999999999999875321 0
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCcc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~~ 152 (426)
.++ ..+.+.|.+.+.+.|++++ +++|++++.+++++.+++.+|+++.+|.||.|.|..+..
T Consensus 213 -~~d-~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 274 (461)
T PRK05249 213 -FLD-DEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNT 274 (461)
T ss_pred -cCC-HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccc
Confidence 000 1133445566667899999 899999987777777778888899999999999988754
No 241
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.43 E-value=7.6e-06 Score=82.33 Aligned_cols=33 Identities=30% Similarity=0.546 Sum_probs=30.8
Q ss_pred cEEEECchHHHHHHHHHHH----HCCCcEEEEcCCCC
Q 014377 11 DLAVVGGGPAGLAVAQQVS----EAGLSVCSIDPSPK 43 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La----~~G~~V~liE~~~~ 43 (426)
||+|||||.||+++|+.++ +.|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 8999999999999999998 67999999999764
No 242
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.42 E-value=3e-06 Score=83.46 Aligned_cols=99 Identities=21% Similarity=0.279 Sum_probs=77.1
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
-+|+|||||++|+.+|..|++.|.+|+++|+.+... +
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------------~------------------ 207 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL-------------------------P------------------ 207 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC-------------------------C------------------
Confidence 579999999999999999999999999999875310 0
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCC--cEEEcCEEEECCCCCCccc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDG--VTIQAAVVLDATGFSRCLV 153 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g--~~i~a~~vV~AdG~~s~~r 153 (426)
.. ...+.+.+.+.+.+.|++++ +++|++++.+++++.+.+.+| .++.+|.||.|.|..+...
T Consensus 208 -~~-~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 208 -GE-DAEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred -CC-CHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence 00 01233345566667899999 899999988777777777667 5799999999999877543
No 243
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.42 E-value=1.9e-06 Score=84.11 Aligned_cols=110 Identities=13% Similarity=0.113 Sum_probs=69.8
Q ss_pred cEEEECchHHHHHHHHHHHHC--CCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCC
Q 014377 11 DLAVVGGGPAGLAVAQQVSEA--GLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRP 88 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~--G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (426)
+|+|||||+||+.+|..|++. +.+|+|||+.+...+.. |+ +...+....+ . .. .
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~-~~----------lp~~~~~~~~-------~---~~---~ 58 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFAN-CA----------LPYYIGEVVE-------D---RK---Y 58 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCccccc-CC----------cchhhcCccC-------C---HH---H
Confidence 799999999999999999876 68999999987543221 11 0000000000 0 00 0
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcC-Cc--EEEcCEEEECCCCCCc
Q 014377 89 YGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICND-GV--TIQAAVVLDATGFSRC 151 (426)
Q Consensus 89 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~-g~--~i~a~~vV~AdG~~s~ 151 (426)
...+.... ...+.|++++ +++|+++..+++.+.+...+ ++ ++.+|.||.|+|....
T Consensus 59 ~~~~~~~~-------~~~~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~ 118 (438)
T PRK13512 59 ALAYTPEK-------FYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASAN 118 (438)
T ss_pred cccCCHHH-------HHHhCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCC
Confidence 00011111 1134689988 89999998887777666543 22 4689999999998764
No 244
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.41 E-value=7e-07 Score=88.42 Aligned_cols=40 Identities=38% Similarity=0.542 Sum_probs=36.8
Q ss_pred CCCCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCC
Q 014377 5 SKGLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL 44 (426)
Q Consensus 5 ~~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~ 44 (426)
++..++||||||||.|||.+|+.+++.|++|+|+||.+..
T Consensus 2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~ 41 (562)
T COG1053 2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPK 41 (562)
T ss_pred cccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccC
Confidence 4567899999999999999999999999999999998765
No 245
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.40 E-value=1.3e-06 Score=91.33 Aligned_cols=36 Identities=33% Similarity=0.533 Sum_probs=33.4
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCC
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPK 43 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 43 (426)
...+|+||||||||+++|+.|++.|++|+|+|+.+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~ 571 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEK 571 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 357999999999999999999999999999999864
No 246
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.39 E-value=5.6e-06 Score=79.23 Aligned_cols=106 Identities=14% Similarity=0.135 Sum_probs=68.7
Q ss_pred CcEEEECchHHHHHHHHHHHHC--CCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEA--GLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDR 87 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~--G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (426)
.+|+|||||+||+.+|..|.+. ..+|+||++++...+.+.. +...+ . .
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~-----------l~~~~----~-------~-------- 52 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPD-----------LSHVF----S-------Q-------- 52 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCc-----------CcHHH----h-------C--------
Confidence 4899999999999999999875 5689999988753322110 00000 0 0
Q ss_pred CccccCHHHHHH-HHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCc
Q 014377 88 PYGRVNRKLLKS-KMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRC 151 (426)
Q Consensus 88 ~~~~v~r~~l~~-~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~ 151 (426)
......+.. ...+.+.+.|++++ +++|+++..+.. .|.+ +++++.+|.||.|+|....
T Consensus 53 ---~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~--~v~~-~~~~~~yd~LVlATG~~~~ 112 (377)
T PRK04965 53 ---GQRADDLTRQSAGEFAEQFNLRLFPHTWVTDIDAEAQ--VVKS-QGNQWQYDKLVLATGASAF 112 (377)
T ss_pred ---CCCHHHhhcCCHHHHHHhCCCEEECCCEEEEEECCCC--EEEE-CCeEEeCCEEEECCCCCCC
Confidence 001111111 12233345799998 889999887654 3333 5678999999999998764
No 247
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.38 E-value=4.3e-06 Score=82.36 Aligned_cols=98 Identities=27% Similarity=0.382 Sum_probs=76.2
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
-.|+|||||++|+-+|..|++.|.+|+++|+.+... +.
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-~~----------------------------------------- 210 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL-PG----------------------------------------- 210 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC-Cc-----------------------------------------
Confidence 479999999999999999999999999999876321 00
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCC---cEEEcCEEEECCCCCCcc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDG---VTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g---~~i~a~~vV~AdG~~s~~ 152 (426)
.+ ..+.+.+.+.+.+.|++++ +++|++++.+++.+.+.+.++ +++.+|.||.|.|..+..
T Consensus 211 --~~-~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~ 274 (462)
T PRK06416 211 --ED-KEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNT 274 (462)
T ss_pred --CC-HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCC
Confidence 00 1223445556667899999 899999988777777777665 679999999999987654
No 248
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.33 E-value=4.4e-06 Score=87.22 Aligned_cols=107 Identities=18% Similarity=0.262 Sum_probs=71.1
Q ss_pred CcEEEECchHHHHHHHHHHHHC----CCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCcccc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEA----GLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDL 85 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~----G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (426)
.+|+|||||+||+.+|..|.+. +++|+||++.+...+.+.. +...+. ...
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~-----------L~~~~~-----------~~~---- 57 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVH-----------LSSYFS-----------HHT---- 57 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCc-----------chHhHc-----------CCC----
Confidence 4899999999999999999754 5899999998865443210 111000 000
Q ss_pred CCCccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCcc
Q 014377 86 DRPYGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 86 ~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~~ 152 (426)
...+.....+...+.|++++ +++|+++..+. ..|.+.+|+++.+|.||.|+|....+
T Consensus 58 --------~~~l~~~~~~~~~~~gI~~~~g~~V~~Id~~~--~~V~~~~G~~i~yD~LVIATGs~p~~ 115 (847)
T PRK14989 58 --------AEELSLVREGFYEKHGIKVLVGERAITINRQE--KVIHSSAGRTVFYDKLIMATGSYPWI 115 (847)
T ss_pred --------HHHccCCCHHHHHhCCCEEEcCCEEEEEeCCC--cEEEECCCcEEECCEEEECCCCCcCC
Confidence 00010111122345799999 88898887653 35667788899999999999987654
No 249
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.33 E-value=1.8e-06 Score=80.45 Aligned_cols=141 Identities=21% Similarity=0.279 Sum_probs=86.5
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCc----ccc-----hhHHHhhcCchhhhhhccCCeEEEe
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNN----YGV-----WVDEFEAMDLLDCLDTTWSGAVVHI 77 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~----~g~-----~~~~l~~~~~~~~~~~~~~~~~~~~ 77 (426)
.+.|||||||||=||+-+|.+.++.|-+.+|+-..-.....-. +|. .+.+++.++ ...........+.+
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALd--Gl~~rvcD~s~vq~ 103 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALD--GLCSRVCDQSGVQY 103 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhhc--chHhhhhhhhhhhH
Confidence 5679999999999999999999999999999976533211111 111 222222221 11111101001111
Q ss_pred ---cCCCccccCCCccccCHHHHHHHHHHHHHh-CCcEEEEEEEEEEEEeCC------eEEEEEcCCcEEEcCEEEECCC
Q 014377 78 ---DDNTKKDLDRPYGRVNRKLLKSKMLQKCIT-NGVKFHQAKVIKVIHEES------KSLLICNDGVTIQAAVVLDATG 147 (426)
Q Consensus 78 ---~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~-~gv~~~~~~v~~i~~~~~------~~~v~~~~g~~i~a~~vV~AdG 147 (426)
+..+....-.+-+++||..+...+.+.... ++.++....|.++...+. ...|.+.||..+.|+.||..+|
T Consensus 104 k~LNrs~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~ire~~V~dliv~~~~~~~~~~~gV~l~dgt~v~a~~VilTTG 183 (679)
T KOG2311|consen 104 KVLNRSKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREGAVADLIVEDPDDGHCVVSGVVLVDGTVVYAESVILTTG 183 (679)
T ss_pred HHhhccCCCcccChHHhhhHHHHHHHHHHHhccCCcchhhhhhhhheeeccCCCCceEEEEEEEecCcEeccceEEEeec
Confidence 001111111233468888888888877766 677777778888764422 1357788999999999999999
Q ss_pred CC
Q 014377 148 FS 149 (426)
Q Consensus 148 ~~ 149 (426)
..
T Consensus 184 TF 185 (679)
T KOG2311|consen 184 TF 185 (679)
T ss_pred cc
Confidence 54
No 250
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.33 E-value=2.4e-06 Score=80.51 Aligned_cols=143 Identities=22% Similarity=0.328 Sum_probs=83.9
Q ss_pred cEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcc---cch-------------hHHHh-hcCchh--hhh----
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNY---GVW-------------VDEFE-AMDLLD--CLD---- 67 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~---g~~-------------~~~l~-~~~~~~--~~~---- 67 (426)
||+|||+|+|||++|+.|++. ++|+|+-|.+.......| |+. .+.|. ..++.+ .+.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 999999999999999999997 999999998765211111 110 00111 112211 000
Q ss_pred h-----cc-CCeEEEecCCCc--cccC----CCccc------cCHHHHHHHHHHHHHh-CCcEEE-EEEEEEEEEeCC-e
Q 014377 68 T-----TW-SGAVVHIDDNTK--KDLD----RPYGR------VNRKLLKSKMLQKCIT-NGVKFH-QAKVIKVIHEES-K 126 (426)
Q Consensus 68 ~-----~~-~~~~~~~~~~~~--~~~~----~~~~~------v~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~~~-~ 126 (426)
+ .| -..-+.|+.... -.+. ..... -.-..+...|.+++.+ ++++++ ++.+.++..+++ .
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~ 167 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIG 167 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCce
Confidence 0 00 001111211110 0000 01100 2346778888888887 899999 889999988877 4
Q ss_pred E-EEEE--cCC--cEEEcCEEEECCCCCCcccc
Q 014377 127 S-LLIC--NDG--VTIQAAVVLDATGFSRCLVQ 154 (426)
Q Consensus 127 ~-~v~~--~~g--~~i~a~~vV~AdG~~s~~r~ 154 (426)
+ .|.+ .++ .++.++.||.|+|.-+.+-+
T Consensus 168 ~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly~ 200 (518)
T COG0029 168 VAGVLVLNRNGELGTFRAKAVVLATGGLGGLYA 200 (518)
T ss_pred EeEEEEecCCCeEEEEecCeEEEecCCCccccc
Confidence 4 3333 222 57889999999998876644
No 251
>PRK06116 glutathione reductase; Validated
Probab=98.32 E-value=7.2e-06 Score=80.45 Aligned_cols=98 Identities=17% Similarity=0.216 Sum_probs=76.7
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
-.|+|||||+.|+-+|..|++.|.+|+++++.+.+. ..
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l--~~---------------------------------------- 205 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL--RG---------------------------------------- 205 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc--cc----------------------------------------
Confidence 479999999999999999999999999999875321 00
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCe-EEEEEcCCcEEEcCEEEECCCCCCcc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESK-SLLICNDGVTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~-~~v~~~~g~~i~a~~vV~AdG~~s~~ 152 (426)
.+ ..+.+.+.+.+.+.|++++ +++|.+++.++++ +.+.+.+|+++.+|.||.|.|..+..
T Consensus 206 --~~-~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~ 267 (450)
T PRK06116 206 --FD-PDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNT 267 (450)
T ss_pred --cC-HHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCC
Confidence 00 1133455566667899999 9999999876554 77888888899999999999987654
No 252
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=98.32 E-value=2.8e-05 Score=68.43 Aligned_cols=69 Identities=16% Similarity=0.155 Sum_probs=50.5
Q ss_pred cCHHHHHHHHHHHHHhCCcEEEEEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCccccccCCCCCceeeEEEEEE
Q 014377 92 VNRKLLKSKMLQKCITNGVKFHQAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRCLVQYDKPYNPGYQVAYGILA 171 (426)
Q Consensus 92 v~r~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~~r~~~~~~~~~~~~~~g~~~ 171 (426)
....++...|.+++.+.|+++...+|.+++.-. + -.+|+||.|+|-.+.. +..... ...-.|.++
T Consensus 148 sE~~~ylpyl~k~l~e~Gvef~~r~v~~l~E~~--------~---~~~DVivNCtGL~a~~---L~gDd~-~yPiRGqVl 212 (342)
T KOG3923|consen 148 SEGPKYLPYLKKRLTENGVEFVQRRVESLEEVA--------R---PEYDVIVNCTGLGAGK---LAGDDD-LYPIRGQVL 212 (342)
T ss_pred ccchhhhHHHHHHHHhcCcEEEEeeeccHHHhc--------c---CCCcEEEECCcccccc---ccCCcc-eeeccceEE
Confidence 467889999999999999998888888876421 1 3589999999988753 222222 344678888
Q ss_pred Eeec
Q 014377 172 EVEE 175 (426)
Q Consensus 172 ~~~~ 175 (426)
.++.
T Consensus 213 ~V~A 216 (342)
T KOG3923|consen 213 KVDA 216 (342)
T ss_pred EeeC
Confidence 8774
No 253
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.30 E-value=5.3e-06 Score=86.49 Aligned_cols=106 Identities=19% Similarity=0.257 Sum_probs=69.8
Q ss_pred EEEECchHHHHHHHHHHHHC---CCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCC
Q 014377 12 LAVVGGGPAGLAVAQQVSEA---GLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRP 88 (426)
Q Consensus 12 ViIvGgG~aGl~~A~~La~~---G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (426)
|+|||||+||+.+|..|.+. +++|+|||+.+...+.+.. +...+. + .
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~-----------L~~~l~----g-------~-------- 50 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRIL-----------LSSVLQ----G-------E-------- 50 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCccccc-----------ccHHHC----C-------C--------
Confidence 68999999999999988764 5799999998865432210 000000 0 0
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCcc
Q 014377 89 YGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 89 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~~ 152 (426)
.+...+.....+.+.+.|++++ +++|++++.+. ..|++.+|.++.+|.||.|+|.....
T Consensus 51 ---~~~~~l~~~~~~~~~~~gv~~~~g~~V~~Id~~~--k~V~~~~g~~~~yD~LVlATGs~p~~ 110 (785)
T TIGR02374 51 ---ADLDDITLNSKDWYEKHGITLYTGETVIQIDTDQ--KQVITDAGRTLSYDKLILATGSYPFI 110 (785)
T ss_pred ---CCHHHccCCCHHHHHHCCCEEEcCCeEEEEECCC--CEEEECCCcEeeCCEEEECCCCCcCC
Confidence 0000110011122345799999 88999987654 35677888899999999999987643
No 254
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.30 E-value=2.6e-06 Score=83.01 Aligned_cols=38 Identities=32% Similarity=0.485 Sum_probs=33.6
Q ss_pred CCcCcEEEECchHHHHHHHHHHHH--CCCcEEEEcCCCCC
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSE--AGLSVCSIDPSPKL 44 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~--~G~~V~liE~~~~~ 44 (426)
....+|+||||||||+.+|..|++ .|++|+|||+.+.+
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~p 63 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTP 63 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCC
Confidence 345789999999999999999987 79999999998743
No 255
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.29 E-value=1.1e-05 Score=78.99 Aligned_cols=98 Identities=20% Similarity=0.277 Sum_probs=76.1
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
-.|+|||||++|+-+|..+++.|.+|+++|+.+... +
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-------------------------~------------------ 203 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL-------------------------R------------------ 203 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC-------------------------c------------------
Confidence 369999999999999999999999999999865310 0
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCcc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~~ 152 (426)
..+ ..+.+.+.+.+.+.|++++ +++|++++.+++++.+.+.+|+++.+|.||.|.|..+..
T Consensus 204 -~~d-~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~ 265 (446)
T TIGR01424 204 -GFD-DDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNT 265 (446)
T ss_pred -ccC-HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCC
Confidence 000 1233344555667899999 899999987666777778888899999999999987643
No 256
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.28 E-value=5.9e-06 Score=77.75 Aligned_cols=110 Identities=15% Similarity=0.212 Sum_probs=74.7
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCC--CcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCcccc
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAG--LSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDL 85 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G--~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (426)
++..|+|||||.+|+.+|..|.+.- .+|+|||+++.-.+.. .|.+ ..
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~p-------lL~e-----va------------------- 50 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTP-------LLYE-----VA------------------- 50 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccch-------hhhh-----hh-------------------
Confidence 3467999999999999999999974 8999999987532211 1111 00
Q ss_pred CCCccccCHHHHHHHHHHHHHhC-CcEEEEEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCccc
Q 014377 86 DRPYGRVNRKLLKSKMLQKCITN-GVKFHQAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRCLV 153 (426)
Q Consensus 86 ~~~~~~v~r~~l~~~L~~~~~~~-gv~~~~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~~r 153 (426)
.+.++......-+.+.+... ++++...+|++|+.+... |.+++++.+.+|++|.|.|+....-
T Consensus 51 ---~g~l~~~~i~~p~~~~~~~~~~v~~~~~~V~~ID~~~k~--V~~~~~~~i~YD~LVvalGs~~~~f 114 (405)
T COG1252 51 ---TGTLSESEIAIPLRALLRKSGNVQFVQGEVTDIDRDAKK--VTLADLGEISYDYLVVALGSETNYF 114 (405)
T ss_pred ---cCCCChhheeccHHHHhcccCceEEEEEEEEEEcccCCE--EEeCCCccccccEEEEecCCcCCcC
Confidence 01122222222333334433 488889999999987764 5566677899999999999887543
No 257
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.28 E-value=2.1e-06 Score=84.31 Aligned_cols=98 Identities=21% Similarity=0.356 Sum_probs=63.3
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccC
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLD 86 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
....+|+||||||+|+++|..|++.|++|+|+|+.+..+ |.+ ..++ + .
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~g-----G~l-----~~gi--------p-------~------- 185 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAG-----GLL-----RYGI--------P-------E------- 185 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCC-----cEe-----eccC--------C-------C-------
Confidence 345799999999999999999999999999999986432 110 0000 0 0
Q ss_pred CCccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCC
Q 014377 87 RPYGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFS 149 (426)
Q Consensus 87 ~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~ 149 (426)
+ ... ..+...+.+.+.+.|++++ ++.+.. .+.+.+. .+.+|.||.|+|.+
T Consensus 186 --~-~~~-~~~~~~~~~~l~~~gv~~~~~~~v~~--------~v~~~~~-~~~~d~vvlAtGa~ 236 (457)
T PRK11749 186 --F-RLP-KDIVDREVERLLKLGVEIRTNTEVGR--------DITLDEL-RAGYDAVFIGTGAG 236 (457)
T ss_pred --c-cCC-HHHHHHHHHHHHHcCCEEEeCCEECC--------ccCHHHH-HhhCCEEEEccCCC
Confidence 0 011 2333444556667899987 655411 1222222 26799999999985
No 258
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.28 E-value=1.1e-05 Score=79.24 Aligned_cols=98 Identities=18% Similarity=0.228 Sum_probs=76.5
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
-.|+|||||..|+-+|..|++.|.+|+++|+.+.... .
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~-~----------------------------------------- 215 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLP-G----------------------------------------- 215 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCC-C-----------------------------------------
Confidence 3699999999999999999999999999998653210 0
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCcc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~~ 152 (426)
.+ ..+...+.+.+.+.|++++ ++++++++.+++++.+.+.+|+++.+|.||.|.|..+..
T Consensus 216 --~d-~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~ 276 (466)
T PRK07845 216 --ED-ADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNT 276 (466)
T ss_pred --CC-HHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCC
Confidence 00 0122344555567899999 899999987777777888888899999999999987654
No 259
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.27 E-value=1.7e-06 Score=89.99 Aligned_cols=37 Identities=30% Similarity=0.490 Sum_probs=33.5
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCC
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPK 43 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 43 (426)
....+|+||||||||+++|..|++.|++|+|||+.+.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~ 465 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHE 465 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 3467999999999999999999999999999998654
No 260
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.27 E-value=0.00013 Score=72.85 Aligned_cols=201 Identities=16% Similarity=0.160 Sum_probs=107.9
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEE-EEEc---CC--cEEEcCEEEECCCCCCccc-cccCCCCC
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSL-LICN---DG--VTIQAAVVLDATGFSRCLV-QYDKPYNP 161 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~-v~~~---~g--~~i~a~~vV~AdG~~s~~r-~~~~~~~~ 161 (426)
+.++...+...+.+.+.+.|++++ +++|++++.+++++. |++. +| .+++|+.||.|+|.++.-. +..+...
T Consensus 123 g~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~g~~~- 201 (516)
T TIGR03377 123 GTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGLDI- 201 (516)
T ss_pred cEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhcCCCC-
Confidence 468999999999999999999999 999999998777543 4432 23 3799999999999998532 2222211
Q ss_pred ceeeEEEEEEEeecCCCCCCceeeeecCCCcCCCchhhhccCCCCCcEEEEeeCCCCeEEEecccCcC----CCCCChHH
Q 014377 162 GYQVAYGILAEVEEHPFDLDKMVFMDWRDSHLNNNSELKEANSKIPTFLYAMPFSSNRIFLEETSLVA----RPGVPMKD 237 (426)
Q Consensus 162 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~----~~~~~~~~ 237 (426)
......|..+.++.. .. . .++.....+ . .+ .+++|. .+..+++.|.... ....+.++
T Consensus 202 ~i~p~kG~~lv~~~~-~~-~-~~~~~~~~~----------~----~g-~~~~P~-~~~~liGtT~~~~~~~~~~~~~~~~ 262 (516)
T TIGR03377 202 RMFPAKGALLIMNHR-IN-N-TVINRCRKP----------S----DA-DILVPG-DTISIIGTTSERIDDPDDLPVTQEE 262 (516)
T ss_pred ceecceEEEEEECCc-cc-c-cccccccCC----------C----CC-cEEEEC-CCeEEEecCCCCCCCCCCCCCCHHH
Confidence 123345665555421 11 1 011000000 0 12 235686 4556677664421 12233443
Q ss_pred HHH---HHHHHHhhcCCccccccccceEeecCCCCCCC-----CCCceeEeecc-----CCCCCCCCcHHHHHHHHhcHH
Q 014377 238 IQE---RMVARLKHLGIKVRSIEEDEHCVIPMGGPLPV-----LPQRVVGIGGT-----AGMVHPSTGYMVARTLAAAPI 304 (426)
Q Consensus 238 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-----~~~~v~liGdA-----a~~~~P~~G~G~~~a~~~a~~ 304 (426)
+.. ...++++. +...++...-.++.|+...... .....++++++ .++++-++|. +..+-.-|..
T Consensus 263 v~~ll~~~~~~~P~--l~~~~i~~~~aGvRPl~~~~~~~~~~~~sR~~~i~~~~~~~~~~g~i~i~GGk-ltt~r~~Ae~ 339 (516)
T TIGR03377 263 VDVLLREGAKLAPM--LAQTRILRAFAGVRPLVAVDDDPSGRNISRGIVLLDHAERDGLPGFITITGGK-LTTYRLMAEW 339 (516)
T ss_pred HHHHHHHHHHhCcc--cccCCEEEEEeecccccCCCCCCCccccCCCeEEeecccccCCCCeEEEecch-HHHHHHHHHH
Confidence 332 22233332 2334455555666665322110 11234455532 4555555554 5544444556
Q ss_pred HHHHHHHhc
Q 014377 305 VANAIVRSL 313 (426)
Q Consensus 305 la~~i~~~l 313 (426)
+++.+.+.+
T Consensus 340 ~~d~~~~~l 348 (516)
T TIGR03377 340 ATDVVCKKL 348 (516)
T ss_pred HHHHHHHHc
Confidence 666666554
No 261
>PLN02507 glutathione reductase
Probab=98.27 E-value=1.2e-05 Score=79.59 Aligned_cols=98 Identities=19% Similarity=0.229 Sum_probs=76.5
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
-+|+|||||+.|+-+|..|++.|.+|+|+++.+.+. +
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l-~------------------------------------------ 240 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL-R------------------------------------------ 240 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC-c------------------------------------------
Confidence 479999999999999999999999999999865311 0
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCcc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~~ 152 (426)
..+ ..+.+.+.+.+.+.|++++ +++|++++.+++++.+.+.+|+++.+|.||.|.|..+..
T Consensus 241 -~~d-~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~ 302 (499)
T PLN02507 241 -GFD-DEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNT 302 (499)
T ss_pred -ccC-HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCC
Confidence 001 1123334555567899999 999999987777777888888899999999999987654
No 262
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.26 E-value=1.3e-05 Score=78.38 Aligned_cols=97 Identities=23% Similarity=0.352 Sum_probs=73.2
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
-.|+|||||++|+.+|..|++.|.+|+++|+.+... +.
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-~~----------------------------------------- 195 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL-PR----------------------------------------- 195 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccC-CC-----------------------------------------
Confidence 479999999999999999999999999999976321 00
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCcc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~~ 152 (426)
. ...+.+.+.+.+.+.|++++ +++|++++.+++.+.+. .+++++.+|.||.|.|..+..
T Consensus 196 --~-~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~-~~g~~i~~D~viva~G~~p~~ 255 (438)
T PRK07251 196 --E-EPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVV-TEDETYRFDALLYATGRKPNT 255 (438)
T ss_pred --C-CHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEE-ECCeEEEcCEEEEeeCCCCCc
Confidence 0 01122344555667899999 89999998766555554 356789999999999987653
No 263
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=1.9e-06 Score=76.55 Aligned_cols=112 Identities=17% Similarity=0.200 Sum_probs=65.9
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccc-hh-----HHHh------hcCchhhhhhccCCeEEE
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGV-WV-----DEFE------AMDLLDCLDTTWSGAVVH 76 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~-~~-----~~l~------~~~~~~~~~~~~~~~~~~ 76 (426)
...|.|||||+||+-+|+.++++|++|.|+|.++....|.+-.. +. ..|. .-|+............+.
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~TpaH~td~fAELVCSNSlr~~~~~navGlLk~EMR~lgSlii~ 82 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPAHKTDNFAELVCSNSLRSDALTNAVGLLKAEMRLLGSLIIE 82 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccccCCCcccccchhhheeccccccchhhhhhHHHHHHHHHhhhHHhh
Confidence 45699999999999999999999999999998876544432111 00 0111 111110000001111111
Q ss_pred ecCCCccccCCC-ccccCHHHHHHHHHHHHHh-CCcEEEEEEEEEEEE
Q 014377 77 IDDNTKKDLDRP-YGRVNRKLLKSKMLQKCIT-NGVKFHQAKVIKVIH 122 (426)
Q Consensus 77 ~~~~~~~~~~~~-~~~v~r~~l~~~L~~~~~~-~gv~~~~~~v~~i~~ 122 (426)
..+. ...+.. --.|||..|-+.+-+...+ +.+++++.+|+++-.
T Consensus 83 ~Ad~--~~VPAGgALAVDR~~Fs~~vT~~l~~hpli~vireEvt~iP~ 128 (439)
T COG1206 83 AADK--HRVPAGGALAVDRDGFSQAVTEKLENHPLIEVIREEVTEIPP 128 (439)
T ss_pred hhhh--ccCCCCceeeecHhHHHHHHHHHHhcCCCEEEEccccccCCC
Confidence 1111 111111 1148999999999999987 678877777776643
No 264
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.26 E-value=5.7e-06 Score=76.09 Aligned_cols=149 Identities=13% Similarity=0.125 Sum_probs=95.0
Q ss_pred CCCCcCcEEEECchHHHHHHHHHHHHCC-CcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecC----
Q 014377 5 SKGLVVDLAVVGGGPAGLAVAQQVSEAG-LSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDD---- 79 (426)
Q Consensus 5 ~~~~~~dViIvGgG~aGl~~A~~La~~G-~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~---- 79 (426)
+|+..+|+|.||-||+.|++|..|...+ .+++.+||.+...|....-.-.+.++---+.|++...-|.....|-+
T Consensus 1 ~~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~ 80 (436)
T COG3486 1 MMAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHE 80 (436)
T ss_pred CCCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHH
Confidence 3667899999999999999999999875 78999999999888664211111122222233333222322211100
Q ss_pred CCc--cccCCCccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeC--CeEE--EEEcCCcEEEcCEEEECCCCCCcc
Q 014377 80 NTK--KDLDRPYGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEE--SKSL--LICNDGVTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 80 ~~~--~~~~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~--~~~~--v~~~~g~~i~a~~vV~AdG~~s~~ 152 (426)
... ..+....-.+.|..+.+.+.-.+..- -.+. +.+|++|...+ .... +++.++..++|+-||...|....+
T Consensus 81 h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~I 159 (436)
T COG3486 81 HGRLYEFLNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYI 159 (436)
T ss_pred cchHhhhhhhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcCC
Confidence 000 11111222588999999998888774 2334 88898773322 2233 667778899999999999998876
Q ss_pred cc
Q 014377 153 VQ 154 (426)
Q Consensus 153 r~ 154 (426)
..
T Consensus 160 P~ 161 (436)
T COG3486 160 PP 161 (436)
T ss_pred Ch
Confidence 54
No 265
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.24 E-value=1.5e-05 Score=77.94 Aligned_cols=98 Identities=14% Similarity=0.220 Sum_probs=74.9
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
-.|+|||||..|+-+|..|++.|.+|+|+|+.+.+. .
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il--~----------------------------------------- 203 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL--R----------------------------------------- 203 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC--c-----------------------------------------
Confidence 479999999999999999999999999999875321 0
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCe-EEEEEcCC-cEEEcCEEEECCCCCCcc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESK-SLLICNDG-VTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~-~~v~~~~g-~~i~a~~vV~AdG~~s~~ 152 (426)
..+. .+.+.+.+.+.+.|++++ +++|++++.++++ +.+.+.+| +++.+|.||.|.|..+..
T Consensus 204 -~~d~-~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~ 267 (450)
T TIGR01421 204 -SFDS-MISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNT 267 (450)
T ss_pred -ccCH-HHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCc
Confidence 0011 133445555667899999 9999999876443 66777777 579999999999987654
No 266
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.23 E-value=1.8e-06 Score=78.29 Aligned_cols=128 Identities=20% Similarity=0.233 Sum_probs=72.7
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCC-CCCcccchhHH--HhhcCchhhhhhc-c--CCeEEEecCCC
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLI-WPNNYGVWVDE--FEAMDLLDCLDTT-W--SGAVVHIDDNT 81 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~-~~~~~g~~~~~--l~~~~~~~~~~~~-~--~~~~~~~~~~~ 81 (426)
.+|||+||||||+|-.+|+..++.|++.+++|++...+ .--+-|+..+. |..-.+.....+. . .+..+.
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs----- 112 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVS----- 112 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCcccc-----
Confidence 57999999999999999999999999999999976432 11122333221 2222222222110 0 111110
Q ss_pred ccccCCCccccCHHHHHH-----------HHHHHHHhCCcEEEEEEEEEEEEeCCeEEEEEcCC--cEEEcCEEEECCCC
Q 014377 82 KKDLDRPYGRVNRKLLKS-----------KMLQKCITNGVKFHQAKVIKVIHEESKSLLICNDG--VTIQAAVVLDATGF 148 (426)
Q Consensus 82 ~~~~~~~~~~v~r~~l~~-----------~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g--~~i~a~~vV~AdG~ 148 (426)
-..+|...+.. .+.....+.+|.+.... .-..+++.+.+...|| .+++++.+|.|+|.
T Consensus 113 -------~~~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~--gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGS 183 (506)
T KOG1335|consen 113 -------SVSLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGF--GSFLDPNKVSVKKIDGEDQIIKAKNIIIATGS 183 (506)
T ss_pred -------ceecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeee--EeecCCceEEEeccCCCceEEeeeeEEEEeCC
Confidence 11233333333 33333344556655211 1112455677777777 57899999999996
Q ss_pred C
Q 014377 149 S 149 (426)
Q Consensus 149 ~ 149 (426)
.
T Consensus 184 e 184 (506)
T KOG1335|consen 184 E 184 (506)
T ss_pred c
Confidence 3
No 267
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.23 E-value=2.5e-06 Score=83.36 Aligned_cols=37 Identities=41% Similarity=0.603 Sum_probs=33.9
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCC
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPK 43 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 43 (426)
....+|+||||||+|+++|..|++.|++|+|+|+.+.
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~ 167 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHK 167 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 3568999999999999999999999999999999764
No 268
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.23 E-value=2e-05 Score=76.08 Aligned_cols=99 Identities=26% Similarity=0.343 Sum_probs=78.6
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
-.++|||||+.|+-.|..+++.|.+|+|+|+.+.+.. .
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp--~---------------------------------------- 211 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP--G---------------------------------------- 211 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC--c----------------------------------------
Confidence 4599999999999999999999999999999874320 0
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCc--EEEcCEEEECCCCCCccc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGV--TIQAAVVLDATGFSRCLV 153 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~--~i~a~~vV~AdG~~s~~r 153 (426)
. -..+.+.+.+.+.+.|++++ +++++.++..++++.+.+++|. ++++|.|+.|.|..+.+-
T Consensus 212 --~-D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~ 275 (454)
T COG1249 212 --E-DPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTD 275 (454)
T ss_pred --C-CHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCC
Confidence 0 11244455566666789999 9999999888777888888775 799999999999987654
No 269
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.23 E-value=2.3e-06 Score=91.02 Aligned_cols=36 Identities=31% Similarity=0.482 Sum_probs=33.2
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCC
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPK 43 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 43 (426)
...+|+||||||||+++|..|++.|++|+|||+.+.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~ 464 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHV 464 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 357999999999999999999999999999998764
No 270
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.22 E-value=1.8e-05 Score=78.03 Aligned_cols=98 Identities=23% Similarity=0.377 Sum_probs=73.7
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
-.|+|||||+.|+-+|..|++.|.+|+|+|+.+... +.
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l-~~----------------------------------------- 210 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL-PN----------------------------------------- 210 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC-Cc-----------------------------------------
Confidence 479999999999999999999999999999765311 00
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEc--CC--cEEEcCEEEECCCCCCcc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICN--DG--VTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~--~g--~~i~a~~vV~AdG~~s~~ 152 (426)
.+ ..+.+.+.+.+.+.|++++ +++|++++.+++.+.+.+. +| +++.+|.||.|.|..+..
T Consensus 211 --~d-~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~ 275 (466)
T PRK07818 211 --ED-AEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRV 275 (466)
T ss_pred --cC-HHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCC
Confidence 00 1123344556667899999 9999999876666655553 56 479999999999987654
No 271
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.22 E-value=8.8e-05 Score=69.77 Aligned_cols=38 Identities=26% Similarity=0.410 Sum_probs=32.2
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHC-CCcEEEEcCCCCC
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEA-GLSVCSIDPSPKL 44 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~-G~~V~liE~~~~~ 44 (426)
.....|+|||||.||+++|.+|-+. +.+|+|+|....+
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRI 57 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRI 57 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEecccc
Confidence 3456899999999999999999865 5689999987765
No 272
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.21 E-value=2.1e-05 Score=77.26 Aligned_cols=98 Identities=23% Similarity=0.327 Sum_probs=72.7
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+... +.
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll-------------------------~~----------------- 208 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL-------------------------PG----------------- 208 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------cc-----------------
Confidence 479999999999999999999999999999875310 00
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCC-cEEEcCEEEECCCCCCcc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDG-VTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g-~~i~a~~vV~AdG~~s~~ 152 (426)
. ...+.+.+.+.+.+.|++++ +++|++++.++..+.+...++ .++.+|.||.|+|..+.+
T Consensus 209 --~-d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~ 270 (458)
T PRK06912 209 --E-DEDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRV 270 (458)
T ss_pred --c-cHHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCC
Confidence 0 01233445566667899999 899999987665555543322 369999999999987764
No 273
>PRK07846 mycothione reductase; Reviewed
Probab=98.21 E-value=1.5e-05 Score=77.95 Aligned_cols=97 Identities=25% Similarity=0.316 Sum_probs=73.1
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
-+|+|||||+.|+-+|..|++.|.+|+++|+.+... + .
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll-~-----------~------------------------------ 204 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL-R-----------H------------------------------ 204 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc-c-----------c------------------------------
Confidence 479999999999999999999999999999875321 0 0
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCcc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~~ 152 (426)
.+. .+.+.+.+ ..+.|++++ ++++++++.+++++.+.+.+|+++.+|.||.|.|..+..
T Consensus 205 --~d~-~~~~~l~~-l~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~ 264 (451)
T PRK07846 205 --LDD-DISERFTE-LASKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNG 264 (451)
T ss_pred --cCH-HHHHHHHH-HHhcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCc
Confidence 000 01122222 224679988 899999987766777888888899999999999987654
No 274
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.20 E-value=2.2e-05 Score=77.44 Aligned_cols=98 Identities=17% Similarity=0.280 Sum_probs=74.6
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
-.|+|||||+.|+-+|..|++.|.+|+|+|+.+....
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------- 220 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA------------------------------------------- 220 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC-------------------------------------------
Confidence 4799999999999999999999999999998753210
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcC--C--cEEEcCEEEECCCCCCcc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICND--G--VTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~--g--~~i~a~~vV~AdG~~s~~ 152 (426)
..+ ..+.+.+.+.+.+.|++++ +++|++++.+++++.+.+.+ | +++.+|.||.|.|..+..
T Consensus 221 -~~d-~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~ 286 (475)
T PRK06327 221 -AAD-EQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNT 286 (475)
T ss_pred -cCC-HHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCC
Confidence 001 2233444555666899999 89999998777666666544 3 479999999999987654
No 275
>PRK06370 mercuric reductase; Validated
Probab=98.19 E-value=2.2e-05 Score=77.34 Aligned_cols=98 Identities=22% Similarity=0.300 Sum_probs=73.2
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
-+|+|||||+.|+-+|..|++.|.+|+++|+.+... +.
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-------------------------~~----------------- 209 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLL-------------------------PR----------------- 209 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCC-------------------------cc-----------------
Confidence 479999999999999999999999999999876321 00
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEE--c-CCcEEEcCEEEECCCCCCcc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLIC--N-DGVTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~--~-~g~~i~a~~vV~AdG~~s~~ 152 (426)
. ...+.+.+.+.+.+.|++++ +++|.+++.+++++.+.+ . ++.++.+|.||.|.|..+..
T Consensus 210 --~-~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~ 273 (463)
T PRK06370 210 --E-DEDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNT 273 (463)
T ss_pred --c-CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCC
Confidence 0 01123345555667899999 899999987766555443 2 34579999999999987654
No 276
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.19 E-value=1.9e-05 Score=77.92 Aligned_cols=98 Identities=22% Similarity=0.344 Sum_probs=72.1
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
-.|+|||||++|+-+|..|++.|.+|+|+|+.+... +.
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il-------------------------~~----------------- 218 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL-------------------------PT----------------- 218 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC-------------------------Cc-----------------
Confidence 479999999999999999999999999999876320 00
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEe-CCeE-EEEEcCC--cEEEcCEEEECCCCCCcc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHE-ESKS-LLICNDG--VTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~-~~~~-~v~~~~g--~~i~a~~vV~AdG~~s~~ 152 (426)
. ...+.+.+.+.+.+.|++++ +++|++++.+ ++++ .+.+.+| +++.+|.||.|.|.....
T Consensus 219 --~-~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 283 (472)
T PRK05976 219 --E-DAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNT 283 (472)
T ss_pred --C-CHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCC
Confidence 0 01233344555667899999 9999999752 3333 3445566 479999999999987654
No 277
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.18 E-value=2.5e-05 Score=76.92 Aligned_cols=98 Identities=23% Similarity=0.334 Sum_probs=73.0
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+... +.
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-~~----------------------------------------- 204 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL-PR----------------------------------------- 204 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC-Cc-----------------------------------------
Confidence 579999999999999999999999999999875321 00
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEc---CCcEEEcCEEEECCCCCCcc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICN---DGVTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~---~g~~i~a~~vV~AdG~~s~~ 152 (426)
.+ ..+...+.+.+.+.|++++ +++|++++.+++.+.+.+. +++++.+|.||.|.|..+..
T Consensus 205 --~d-~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~ 268 (463)
T TIGR02053 205 --EE-PEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNT 268 (463)
T ss_pred --cC-HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCC
Confidence 00 0122344555567899999 8999999876665555543 23689999999999987654
No 278
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.17 E-value=2.9e-05 Score=76.39 Aligned_cols=98 Identities=21% Similarity=0.252 Sum_probs=73.0
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
-.|+|||||+.|+-+|..+++.|.+|+|+|+.+... +
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il-------------------------~------------------ 211 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC-------------------------P------------------ 211 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC-------------------------C------------------
Confidence 479999999999999999999999999999865321 0
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEc-----CCcEEEcCEEEECCCCCCcc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICN-----DGVTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~-----~g~~i~a~~vV~AdG~~s~~ 152 (426)
..+ ..+.+.+.+.+.+.|++++ +++|++++.+++++.+.+. +++++.+|.||.|.|..+..
T Consensus 212 -~~d-~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~ 278 (466)
T PRK06115 212 -GTD-TETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYT 278 (466)
T ss_pred -CCC-HHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCcccc
Confidence 001 1133445556667899999 9999999876666655432 23579999999999987654
No 279
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.17 E-value=2e-05 Score=76.77 Aligned_cols=96 Identities=21% Similarity=0.329 Sum_probs=72.8
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
-.|+|||||++|+-+|..|++.|.+|+++++.+.... +
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~------------------------~------------------ 175 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN------------------------K------------------ 175 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc------------------------c------------------
Confidence 4799999999999999999999999999998753200 0
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRC 151 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~ 151 (426)
..+ ..+.+.+.+.+.+.|++++ +++|.+++.++. + +.+.+|+++.+|.||.|.|....
T Consensus 176 -~~~-~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~-~-v~~~~g~~i~~D~vi~a~G~~p~ 234 (427)
T TIGR03385 176 -LFD-EEMNQIVEEELKKHEINLRLNEEVDSIEGEER-V-KVFTSGGVYQADMVILATGIKPN 234 (427)
T ss_pred -ccC-HHHHHHHHHHHHHcCCEEEeCCEEEEEecCCC-E-EEEcCCCEEEeCEEEECCCccCC
Confidence 001 1233445566667899999 899999976443 3 56678889999999999998754
No 280
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.16 E-value=6.4e-06 Score=85.03 Aligned_cols=37 Identities=27% Similarity=0.380 Sum_probs=33.5
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCC
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPK 43 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 43 (426)
.+...|+||||||||+++|+.|++.|++|+|+|+.+.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i 417 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKI 417 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccc
Confidence 3557899999999999999999999999999998653
No 281
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.15 E-value=8.8e-06 Score=77.07 Aligned_cols=36 Identities=36% Similarity=0.536 Sum_probs=33.1
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCC
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPK 43 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 43 (426)
...+|+|||||++|+.+|..|++.|.+|+++|+.+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~ 52 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPE 52 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 356999999999999999999999999999999764
No 282
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.15 E-value=1.9e-05 Score=82.37 Aligned_cols=99 Identities=20% Similarity=0.392 Sum_probs=75.1
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
-.|+|||||+.|+-+|..|++.|.+|+|+|+.+... ++
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll-~~----------------------------------------- 178 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLM-AK----------------------------------------- 178 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchh-hh-----------------------------------------
Confidence 469999999999999999999999999999865310 00
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCcc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~~ 152 (426)
.++. ...+.+.+.+.+.|++++ ++.++++..++....|++.||+++.+|+||.|.|..+..
T Consensus 179 -~ld~-~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~ 240 (785)
T TIGR02374 179 -QLDQ-TAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPND 240 (785)
T ss_pred -hcCH-HHHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcCc
Confidence 0011 123344555567899999 888988876555567888999999999999999987543
No 283
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.14 E-value=2.8e-06 Score=82.96 Aligned_cols=39 Identities=28% Similarity=0.537 Sum_probs=35.8
Q ss_pred CCCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCC
Q 014377 6 KGLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL 44 (426)
Q Consensus 6 ~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~ 44 (426)
...+.+|||||||+||+++|..|.+.|++|+|+|.+...
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRv 50 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRV 50 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCc
Confidence 456789999999999999999999999999999988766
No 284
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.12 E-value=3.2e-05 Score=73.18 Aligned_cols=144 Identities=17% Similarity=0.217 Sum_probs=78.5
Q ss_pred cCcEEEECchHHHHHHHHHHHHC--C-CcEEEEcCCCCCCCCCcccchhH----HHhh--cCc--hhhhh--hccCCeEE
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEA--G-LSVCSIDPSPKLIWPNNYGVWVD----EFEA--MDL--LDCLD--TTWSGAVV 75 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~--G-~~V~liE~~~~~~~~~~~g~~~~----~l~~--~~~--~~~~~--~~~~~~~~ 75 (426)
+++|+|||||++|+.+|.+|.+. . -.|.|+|+++..+....|..-.. .... +.+ .+.-. ..|=....
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~ 80 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQL 80 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhcc
Confidence 37899999999999999999875 2 23999999987644333322111 0011 111 11000 11211100
Q ss_pred EecCCCccccCCCccccCHHHHHHHHHHHHH----hC--C-cEEEEEEEEEEEEe--CCeEEEEEcCCcEEEcCEEEECC
Q 014377 76 HIDDNTKKDLDRPYGRVNRKLLKSKMLQKCI----TN--G-VKFHQAKVIKVIHE--ESKSLLICNDGVTIQAAVVLDAT 146 (426)
Q Consensus 76 ~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~----~~--g-v~~~~~~v~~i~~~--~~~~~v~~~~g~~i~a~~vV~Ad 146 (426)
.-...........-.+..|..|-..|.++.. .. . +..+.++++++... .++..+...+|.+..||.+|.|+
T Consensus 81 ~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat 160 (474)
T COG4529 81 QRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIVLAT 160 (474)
T ss_pred cccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence 0000000000011112345555544444332 11 2 44447788888776 55678888999999999999999
Q ss_pred CCCCcc
Q 014377 147 GFSRCL 152 (426)
Q Consensus 147 G~~s~~ 152 (426)
|.....
T Consensus 161 gh~~~~ 166 (474)
T COG4529 161 GHSAPP 166 (474)
T ss_pred cCCCCC
Confidence 976443
No 285
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.10 E-value=4.5e-05 Score=75.16 Aligned_cols=98 Identities=18% Similarity=0.222 Sum_probs=73.2
Q ss_pred CcEEEECchHHHHHHHHHHHH---CCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSE---AGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLD 86 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~---~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
-.|+|||||+.|+-+|..++. .|.+|+|+|+.+... +
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il-~--------------------------------------- 227 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL-R--------------------------------------- 227 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc-c---------------------------------------
Confidence 479999999999999976654 499999999875321 0
Q ss_pred CCccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCe-EEEEEcCCcEEEcCEEEECCCCCCcc
Q 014377 87 RPYGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESK-SLLICNDGVTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 87 ~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~-~~v~~~~g~~i~a~~vV~AdG~~s~~ 152 (426)
.++ ..+.+.+.+.+++.|++++ ++++++++.++++ ..+.+.+++++.+|.||.|.|..+..
T Consensus 228 ----~~d-~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~ 290 (486)
T TIGR01423 228 ----GFD-STLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRT 290 (486)
T ss_pred ----ccC-HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCc
Confidence 001 1233455566667899999 8999999865443 56777788899999999999987654
No 286
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.09 E-value=3.9e-06 Score=79.11 Aligned_cols=35 Identities=20% Similarity=0.433 Sum_probs=32.7
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL 44 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~ 44 (426)
+||+|||||++|+++|..|++.|.+|+|+|+++..
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~i 36 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHI 36 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 79999999999999999999999999999997654
No 287
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.08 E-value=4.6e-05 Score=74.57 Aligned_cols=97 Identities=19% Similarity=0.324 Sum_probs=74.3
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
-.|+|||||+.|+-+|..|++.|.+|+|+|+.+... +.
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-~~----------------------------------------- 196 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL-PR----------------------------------------- 196 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC-CC-----------------------------------------
Confidence 379999999999999999999999999999865211 00
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCcc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~~ 152 (426)
.+ ..+.+.+.+.+.+.|++++ +++|++++.+++.+.+.+.++ ++.+|.||.|.|..+..
T Consensus 197 --~~-~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 197 --ED-RDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQPAT 256 (441)
T ss_pred --cC-HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCCcCC
Confidence 00 1123345666677899999 899999987766666666555 58999999999987754
No 288
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.08 E-value=3.5e-05 Score=75.20 Aligned_cols=93 Identities=16% Similarity=0.230 Sum_probs=71.3
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
-.|+|||||+.|+-+|..|++.|.+|+|+|+.+... . .
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~--~----------~------------------------------ 186 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKIN--K----------L------------------------------ 186 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc--h----------h------------------------------
Confidence 479999999999999999999999999999875321 0 0
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRC 151 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~ 151 (426)
.+ ..+.+.+.+.+.+.|++++ +++|++++. . .+++.+|+++.+|.||.|.|..+.
T Consensus 187 --~d-~~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~--~v~~~~g~~~~~D~vl~a~G~~pn 242 (438)
T PRK13512 187 --MD-ADMNQPILDELDKREIPYRLNEEIDAING--N--EVTFKSGKVEHYDMIIEGVGTHPN 242 (438)
T ss_pred --cC-HHHHHHHHHHHHhcCCEEEECCeEEEEeC--C--EEEECCCCEEEeCEEEECcCCCcC
Confidence 00 1233445556667899999 899998863 2 466677888999999999998764
No 289
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.08 E-value=4.8e-05 Score=74.54 Aligned_cols=97 Identities=25% Similarity=0.301 Sum_probs=72.2
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
-.++|||||+.|+-+|..|++.|.+|+++|+.+... . .
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll--~----------~------------------------------ 207 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLL--R----------H------------------------------ 207 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccc--c----------c------------------------------
Confidence 479999999999999999999999999999865311 0 0
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCcc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~~ 152 (426)
.+. .+.+.+.+ ..+.|++++ +++|++++.+++++.+.+.+|+++.+|.||.|.|..+..
T Consensus 208 --~d~-~~~~~l~~-~~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~ 267 (452)
T TIGR03452 208 --LDE-DISDRFTE-IAKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNG 267 (452)
T ss_pred --cCH-HHHHHHHH-HHhcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCC
Confidence 000 01112222 223579998 899999987776777888888899999999999987643
No 290
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.08 E-value=9.2e-06 Score=79.76 Aligned_cols=99 Identities=24% Similarity=0.430 Sum_probs=64.2
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCC
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDR 87 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (426)
+..+|+||||||+|+++|..|++.|++|+|+|+.+..+ |.+ . .++ +
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~g-----G~l-~----~gi--------p---------------- 185 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIG-----GLL-T----FGI--------P---------------- 185 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC-----cee-e----ecC--------c----------------
Confidence 45799999999999999999999999999999986432 111 0 000 0
Q ss_pred CccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCc
Q 014377 88 PYGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRC 151 (426)
Q Consensus 88 ~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~ 151 (426)
.+ ..++. +.....+.+.+.|++++ +++|..- +... +....+|.||.|+|....
T Consensus 186 ~~-~~~~~-~~~~~~~~~~~~Gv~~~~~~~v~~~--------~~~~-~~~~~~D~vilAtGa~~~ 239 (467)
T TIGR01318 186 SF-KLDKA-VLSRRREIFTAMGIEFHLNCEVGRD--------ISLD-DLLEDYDAVFLGVGTYRS 239 (467)
T ss_pred cc-cCCHH-HHHHHHHHHHHCCCEEECCCEeCCc--------cCHH-HHHhcCCEEEEEeCCCCC
Confidence 00 12222 23344556667899988 7766221 1111 112468999999999764
No 291
>PRK14727 putative mercuric reductase; Provisional
Probab=98.07 E-value=6.4e-05 Score=74.27 Aligned_cols=96 Identities=20% Similarity=0.239 Sum_probs=73.5
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
-.|+|||||+.|+-+|..|++.|.+|+|+++... .+. +
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~--l~~-------------~--------------------------- 226 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARSTL--LFR-------------E--------------------------- 226 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC--CCc-------------c---------------------------
Confidence 4699999999999999999999999999986421 000 0
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCcc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~~ 152 (426)
+ ..+.+.+.+.+.+.|++++ +++|++++.+++.+.+.+.++ ++.+|.||.|.|..+..
T Consensus 227 ---d-~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~ 285 (479)
T PRK14727 227 ---D-PLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANT 285 (479)
T ss_pred ---h-HHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCc
Confidence 0 1133445566667899999 899999987776776766555 69999999999998754
No 292
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.06 E-value=5.4e-06 Score=74.40 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=33.4
Q ss_pred EEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCC
Q 014377 111 KFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSR 150 (426)
Q Consensus 111 ~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s 150 (426)
++. ++.|..+.+-++++.++..||++-+.|.||.|+=+.-
T Consensus 233 ~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~dq 273 (447)
T COG2907 233 RIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPDQ 273 (447)
T ss_pred eeecCCceeeeeeCCCceEEecCCCCccccceeeeecChHH
Confidence 366 7779999998999999999999888999999976543
No 293
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=98.06 E-value=0.0001 Score=71.77 Aligned_cols=45 Identities=24% Similarity=0.263 Sum_probs=38.1
Q ss_pred CCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCcc
Q 014377 108 NGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 108 ~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~~ 152 (426)
.|.+++ +++|++|+.+++++.|++.+|+++.||.||.|.......
T Consensus 222 ~g~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~ 267 (450)
T PF01593_consen 222 LGGEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSVLK 267 (450)
T ss_dssp HGGGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHHHH
T ss_pred cCceeecCCcceeccccccccccccccceEEecceeeecCchhhhh
Confidence 456788 999999999999999999999999999999998875544
No 294
>PRK02106 choline dehydrogenase; Validated
Probab=98.06 E-value=4.5e-06 Score=84.09 Aligned_cols=37 Identities=27% Similarity=0.482 Sum_probs=34.6
Q ss_pred CCCcCcEEEECchHHHHHHHHHHHH-CCCcEEEEcCCC
Q 014377 6 KGLVVDLAVVGGGPAGLAVAQQVSE-AGLSVCSIDPSP 42 (426)
Q Consensus 6 ~~~~~dViIvGgG~aGl~~A~~La~-~G~~V~liE~~~ 42 (426)
+..+||+||||+|++|+.+|..|++ .|++|+|||+++
T Consensus 2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 5567999999999999999999999 899999999985
No 295
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.05 E-value=5.8e-05 Score=74.80 Aligned_cols=96 Identities=23% Similarity=0.241 Sum_probs=73.7
Q ss_pred cEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCcc
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPYG 90 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (426)
+|+|||||+.|+-+|..|++.|.+|+|+++... . ..
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~--l-~~----------------------------------------- 219 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNELGFDVTVAVRSIP--L-RG----------------------------------------- 219 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcc--c-cc-----------------------------------------
Confidence 799999999999999999999999999986321 0 00
Q ss_pred ccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCcc
Q 014377 91 RVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 91 ~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~~ 152 (426)
.+ ..+.+.+.+.+++.|++++ ++.+.+++..++.+.+.+.+|+++.+|.||.|.|..+..
T Consensus 220 -~d-~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~ 280 (499)
T PTZ00052 220 -FD-RQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDI 280 (499)
T ss_pred -CC-HHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCc
Confidence 00 0122344555667899999 888888887666667778888889999999999987654
No 296
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.05 E-value=4.5e-05 Score=79.80 Aligned_cols=99 Identities=22% Similarity=0.398 Sum_probs=74.7
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
-.++|||||+.|+-+|..|++.|.+|+|+|+.+... +.
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll-~~----------------------------------------- 183 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLM-AE----------------------------------------- 183 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccch-hh-----------------------------------------
Confidence 368999999999999999999999999999865310 00
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeC--CeEEEEEcCCcEEEcCEEEECCCCCCcc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEE--SKSLLICNDGVTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~--~~~~v~~~~g~~i~a~~vV~AdG~~s~~ 152 (426)
.++ ....+.+.+.+++.|++++ ++.++++..++ ....+.+.||+++.+|+||.|.|..+..
T Consensus 184 -~ld-~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~ 247 (847)
T PRK14989 184 -QLD-QMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQD 247 (847)
T ss_pred -hcC-HHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCc
Confidence 001 1122345556667899999 99999997543 2456778899999999999999987654
No 297
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.05 E-value=1.5e-05 Score=76.74 Aligned_cols=37 Identities=16% Similarity=0.378 Sum_probs=32.1
Q ss_pred CcCcEEEECchHHHHHHHHHH-HHCCCcEEEEcCCCCC
Q 014377 8 LVVDLAVVGGGPAGLAVAQQV-SEAGLSVCSIDPSPKL 44 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~L-a~~G~~V~liE~~~~~ 44 (426)
....|+||||||||+.+|..| ++.|++|+|+|+.+.+
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~p 75 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNP 75 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 346799999999999999975 4679999999998864
No 298
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.05 E-value=1.5e-05 Score=74.77 Aligned_cols=94 Identities=19% Similarity=0.281 Sum_probs=63.1
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRP 88 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (426)
.-+++|||||+||+++|+.|++.|++|.|+|+.+..+ .++..+.. .+|.. +.+
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiG------Grmak~~k---------~FP~~------------dcs 176 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIG------GRMAKLNK---------TFPTN------------DCS 176 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccc------ccHHhhhc---------cCCCc------------ccc
Confidence 3579999999999999999999999999999998653 33222211 11110 111
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCC
Q 014377 89 YGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDG 134 (426)
Q Consensus 89 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g 134 (426)
... |...+.+-...++++++ .++|+++.-.-+.++|+....
T Consensus 177 ~C~-----LaP~m~~v~~hp~i~l~TyaeV~ev~G~vGnF~vki~kk 218 (622)
T COG1148 177 ICI-----LAPKMVEVSNHPNIELITYAEVEEVSGSVGNFTVKIEKK 218 (622)
T ss_pred hhh-----ccchhhhhccCCceeeeeeeeeeeecccccceEEEEecc
Confidence 111 12223334445789999 999999987777777776654
No 299
>PRK14694 putative mercuric reductase; Provisional
Probab=98.05 E-value=6.8e-05 Score=73.89 Aligned_cols=96 Identities=21% Similarity=0.192 Sum_probs=72.2
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
-.|+|||||+.|+-+|..|++.|.+|+++++... .+.
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~--l~~----------------------------------------- 215 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARSRV--LSQ----------------------------------------- 215 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCC--CCC-----------------------------------------
Confidence 4799999999999999999999999999986421 000
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCcc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~~ 152 (426)
. ...+.+.+.+.+.+.|++++ ++++.+++.+++.+.+.+.+ .++.+|.||.|.|..+..
T Consensus 216 --~-~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~-~~i~~D~vi~a~G~~pn~ 275 (468)
T PRK14694 216 --E-DPAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNA-GTLRAEQLLVATGRTPNT 275 (468)
T ss_pred --C-CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECC-CEEEeCEEEEccCCCCCc
Confidence 0 01123345566667899999 88999998776666666544 479999999999987754
No 300
>PLN02576 protoporphyrinogen oxidase
Probab=98.04 E-value=5.3e-06 Score=82.57 Aligned_cols=38 Identities=32% Similarity=0.500 Sum_probs=35.0
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHC-CCcEEEEcCCCCC
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEA-GLSVCSIDPSPKL 44 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~-G~~V~liE~~~~~ 44 (426)
..++||+|||||++||++|+.|++. |++|+|+|+.+..
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rv 48 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRV 48 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCC
Confidence 4567999999999999999999999 9999999998765
No 301
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.04 E-value=5.8e-05 Score=73.99 Aligned_cols=97 Identities=24% Similarity=0.339 Sum_probs=71.5
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
-.|+|||||++|+-+|..|++.|.+|+++++.+... +.
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------------~~----------------- 187 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRIL-------------------------PD----------------- 187 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccC-------------------------ch-----------------
Confidence 479999999999999999999999999998764210 00
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRC 151 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~ 151 (426)
.. ...+.+.+.+.+.+.|++++ +++|++++.+++...+.+ ++.++.+|.||.|.|..+.
T Consensus 188 -~~-~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~-~~~~i~~d~vi~a~G~~p~ 247 (444)
T PRK09564 188 -SF-DKEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVT-DKGEYEADVVIVATGVKPN 247 (444)
T ss_pred -hc-CHHHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEe-CCCEEEcCEEEECcCCCcC
Confidence 00 12244556666777899999 999999965443334444 4557999999999998654
No 302
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.02 E-value=5.6e-06 Score=82.20 Aligned_cols=56 Identities=11% Similarity=0.217 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeE-EEEEcCC-----cEEEcCEEEECCCCCC
Q 014377 95 KLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKS-LLICNDG-----VTIQAAVVLDATGFSR 150 (426)
Q Consensus 95 ~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~-~v~~~~g-----~~i~a~~vV~AdG~~s 150 (426)
..|.+.|.+.+++.|++++ +++|++|..+++.+ .|.+.++ +++.||.||.+...+.
T Consensus 232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~ 294 (492)
T TIGR02733 232 QTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQS 294 (492)
T ss_pred HHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHH
Confidence 4566777777777899999 99999999876642 3444443 5789999999987643
No 303
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.01 E-value=3.3e-05 Score=68.70 Aligned_cols=38 Identities=24% Similarity=0.442 Sum_probs=32.5
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCC
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL 44 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~ 44 (426)
.....|+|||+|+|||+++..+-..|-.|+|+|+....
T Consensus 7 ~~lspvvVIGgGLAGLsasn~iin~gg~V~llek~~s~ 44 (477)
T KOG2404|consen 7 AELSPVVVIGGGLAGLSASNDIINKGGIVILLEKAGSI 44 (477)
T ss_pred ccCCcEEEECCchhhhhhHHHHHhcCCeEEEEeccCCc
Confidence 34447999999999999999998877779999998765
No 304
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.99 E-value=0.0001 Score=72.81 Aligned_cols=97 Identities=28% Similarity=0.270 Sum_probs=71.7
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
-.++|||||+.|+-+|..|++.|.+|+|+++.. . . +.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~-l-~~---------------------------------------- 217 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSI-L-L-RG---------------------------------------- 217 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEecc-c-c-cc----------------------------------------
Confidence 369999999999999999999999999998631 1 0 00
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCC---cEEEcCEEEECCCCCCcc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDG---VTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g---~~i~a~~vV~AdG~~s~~ 152 (426)
.+ ..+.+.+.+.+++.|++++ ++.+.+++..++.+.+++.++ +++.+|.||.|.|..+..
T Consensus 218 --~d-~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~ 281 (484)
T TIGR01438 218 --FD-QDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACT 281 (484)
T ss_pred --cC-HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCC
Confidence 00 1122344555667899999 888888887666666766655 379999999999987644
No 305
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.98 E-value=8.2e-05 Score=73.32 Aligned_cols=97 Identities=21% Similarity=0.212 Sum_probs=71.0
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+... +
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il-~------------------------------------------ 211 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI-P------------------------------------------ 211 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC-C------------------------------------------
Confidence 479999999999999999999999999999876321 0
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCC----cEEEcCEEEECCCCCCcc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDG----VTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g----~~i~a~~vV~AdG~~s~~ 152 (426)
..+ ..+.+.+.+.+.+. ++++ +++|++++.+++++.+.+.++ +++.+|.||.|.|..+..
T Consensus 212 -~~d-~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~ 276 (471)
T PRK06467 212 -AAD-KDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNG 276 (471)
T ss_pred -cCC-HHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccC
Confidence 000 11222334444445 7888 889999987766666665432 469999999999987765
No 306
>PTZ00058 glutathione reductase; Provisional
Probab=97.97 E-value=0.00012 Score=73.07 Aligned_cols=99 Identities=13% Similarity=0.198 Sum_probs=72.7
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRP 88 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (426)
.-.|+|||||..|+-+|..|++.|.+|+++|+.+... .
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il--~---------------------------------------- 274 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL--R---------------------------------------- 274 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc--c----------------------------------------
Confidence 3479999999999999999999999999999875311 0
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCC-eEEEEEcCC-cEEEcCEEEECCCCCCcc
Q 014377 89 YGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEES-KSLLICNDG-VTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 89 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~-~~~v~~~~g-~~i~a~~vV~AdG~~s~~ 152 (426)
.++ ..+.+.+.+.+.+.|++++ +++|.+++.+++ ++.+...++ +++.+|.||.|.|..+.+
T Consensus 275 --~~d-~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~ 338 (561)
T PTZ00058 275 --KFD-ETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNT 338 (561)
T ss_pred --cCC-HHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCc
Confidence 011 1122344555667899999 899999986543 455555444 579999999999987654
No 307
>PLN02568 polyamine oxidase
Probab=97.96 E-value=1e-05 Score=80.50 Aligned_cols=52 Identities=15% Similarity=0.138 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCC
Q 014377 96 LLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFS 149 (426)
Q Consensus 96 ~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~ 149 (426)
.|.+.|.+.+. +-.++ +++|+.|+.++++++|++.+|+++.||.||.+.-..
T Consensus 243 ~Li~~La~~L~--~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl~ 295 (539)
T PLN02568 243 SVIEALASVLP--PGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSLG 295 (539)
T ss_pred HHHHHHHhhCC--CCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCHH
Confidence 34555555442 22466 999999999988999999999899999999997643
No 308
>PRK13748 putative mercuric reductase; Provisional
Probab=97.93 E-value=0.00013 Score=73.77 Aligned_cols=96 Identities=21% Similarity=0.265 Sum_probs=72.5
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
-.|+|||||+.|+-+|..|++.|.+|+|+++... .+. .
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~--l~~-~--------------------------------------- 308 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARSTL--FFR-E--------------------------------------- 308 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcc--ccc-c---------------------------------------
Confidence 4799999999999999999999999999987421 100 0
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCcc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~~ 152 (426)
...+.+.+.+.+++.|++++ +++|++++.+++.+.+.+.++ ++.+|.||.|.|..+..
T Consensus 309 ----d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 309 ----DPAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNT 367 (561)
T ss_pred ----CHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCC
Confidence 00122344555567899999 999999987766666666555 69999999999987654
No 309
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.93 E-value=2.4e-05 Score=77.13 Aligned_cols=36 Identities=42% Similarity=0.616 Sum_probs=33.1
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCC
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPK 43 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 43 (426)
...+|+||||||+|+++|..|++.|++|+|+|+.+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~ 177 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDR 177 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 347999999999999999999999999999998864
No 310
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.93 E-value=8.3e-05 Score=72.07 Aligned_cols=98 Identities=24% Similarity=0.334 Sum_probs=78.2
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
.+|+|||+|++|+.+|..|+++|.+|+++|+.+.....
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~------------------------------------------ 174 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQ------------------------------------------ 174 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchh------------------------------------------
Confidence 68999999999999999999999999999998643210
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEE---EEEcCCcEEEcCEEEECCCCCCc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSL---LICNDGVTIQAAVVLDATGFSRC 151 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~---v~~~~g~~i~a~~vV~AdG~~s~ 151 (426)
... ..+.+.+.+...+.|++++ +.++.+++...+... +...++.++.+|+++.+.|....
T Consensus 175 -~~~-~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 175 -LLD-PEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred -hhh-HHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence 000 4456666777778899997 899999987766543 57778889999999999998763
No 311
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.91 E-value=1.3e-05 Score=71.27 Aligned_cols=37 Identities=22% Similarity=0.402 Sum_probs=34.5
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLI 45 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~ 45 (426)
.+|++|||+|++|+.+|..|++.|.+|+|+||++.++
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIG 37 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIG 37 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCC
Confidence 4899999999999999999999999999999998763
No 312
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.90 E-value=0.00014 Score=70.80 Aligned_cols=91 Identities=22% Similarity=0.434 Sum_probs=67.7
Q ss_pred cEEEECchHHHHHHHHHHHH--------------CCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEE
Q 014377 11 DLAVVGGGPAGLAVAQQVSE--------------AGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVH 76 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~--------------~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~ 76 (426)
.|+|||||++|+-+|..|+. .+.+|+|+|+.+... +
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll-------------------------~----- 224 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL-------------------------G----- 224 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc-------------------------c-----
Confidence 79999999999999998875 367888888765310 0
Q ss_pred ecCCCccccCCCccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCC
Q 014377 77 IDDNTKKDLDRPYGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSR 150 (426)
Q Consensus 77 ~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s 150 (426)
..+ ..+.+.+.+.+.+.|++++ +++|+++..+ .|.+++|+++.+|++|.|.|...
T Consensus 225 --------------~~~-~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~----~v~~~~g~~i~~d~vi~~~G~~~ 280 (424)
T PTZ00318 225 --------------SFD-QALRKYGQRRLRRLGVDIRTKTAVKEVLDK----EVVLKDGEVIPTGLVVWSTGVGP 280 (424)
T ss_pred --------------cCC-HHHHHHHHHHHHHCCCEEEeCCeEEEEeCC----EEEECCCCEEEccEEEEccCCCC
Confidence 011 1234455566667899999 9999888642 36678899999999999999654
No 313
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=1.4e-05 Score=76.22 Aligned_cols=34 Identities=35% Similarity=0.593 Sum_probs=32.6
Q ss_pred cEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCC
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL 44 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~ 44 (426)
.|+|+|||+|||++|+.|+++|++|+|+|+++..
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~ 35 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRL 35 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCcc
Confidence 5999999999999999999999999999999876
No 314
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.87 E-value=6.3e-05 Score=67.66 Aligned_cols=136 Identities=19% Similarity=0.130 Sum_probs=78.4
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCC-CCCCCCcccchhH------HHhhcCchhhhhhccCCeEEEecCC
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP-KLIWPNNYGVWVD------EFEAMDLLDCLDTTWSGAVVHIDDN 80 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~-~~~~~~~~g~~~~------~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (426)
..||.+|||||-.|+..|.+.++.|.+|.|+|..- ..+.-...|+-.. ......+.+.-+..|+...
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~------ 92 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINE------ 92 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCcccc------
Confidence 37999999999999999999999999999999862 2222222233211 1111112222223333211
Q ss_pred CccccCCCcccc--CH----HHHHHHHHHHHHhCCcEEEEEEEEEEEEeCCeEEEEEcCCc--EEEcCEEEECCCCCCcc
Q 014377 81 TKKDLDRPYGRV--NR----KLLKSKMLQKCITNGVKFHQAKVIKVIHEESKSLLICNDGV--TIQAAVVLDATGFSRCL 152 (426)
Q Consensus 81 ~~~~~~~~~~~v--~r----~~l~~~L~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~g~--~i~a~~vV~AdG~~s~~ 152 (426)
.....+..+ .| .+|.....+.+...+++++..+..- .+++.+.|...||. .++|+.+..|+|.+..+
T Consensus 93 ---~~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f--~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~ 167 (478)
T KOG0405|consen 93 ---EGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARF--VSPGEVEVEVNDGTKIVYTAKHILIATGGRPII 167 (478)
T ss_pred ---ccCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEE--cCCCceEEEecCCeeEEEecceEEEEeCCccCC
Confidence 111122111 11 1233333334445778877333221 13556788888884 37899999999998766
Q ss_pred cc
Q 014377 153 VQ 154 (426)
Q Consensus 153 r~ 154 (426)
..
T Consensus 168 Pn 169 (478)
T KOG0405|consen 168 PN 169 (478)
T ss_pred CC
Confidence 53
No 315
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=97.84 E-value=5.5e-05 Score=70.40 Aligned_cols=61 Identities=11% Similarity=0.174 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCe-EEEEEcCCcEEEcCEEEECCCCCCccccc
Q 014377 95 KLLKSKMLQKCITNGVKFH-QAKVIKVIHEESK-SLLICNDGVTIQAAVVLDATGFSRCLVQY 155 (426)
Q Consensus 95 ~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~-~~v~~~~g~~i~a~~vV~AdG~~s~~r~~ 155 (426)
..+...+.+.+++.|.++. +.+|.+|..+++. +.|+++||++++++.||--.+.+-..-+.
T Consensus 264 Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kL 326 (561)
T KOG4254|consen 264 GAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKL 326 (561)
T ss_pred hHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHh
Confidence 4566778888889999999 9999999988765 46899999999999999888877665443
No 316
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.82 E-value=0.0003 Score=69.33 Aligned_cols=97 Identities=28% Similarity=0.311 Sum_probs=70.6
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
-.|+|||||+.|+-+|..|++.|.+|+++|+.+....
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------- 206 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP------------------------------------------- 206 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc-------------------------------------------
Confidence 4799999999999999999999999999998753210
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCC-eEEEEEcCC--cEEEcCEEEECCCCCCcc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEES-KSLLICNDG--VTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~-~~~v~~~~g--~~i~a~~vV~AdG~~s~~ 152 (426)
..+ ..+.+.+.+.+.+. ++++ ++++++++.+++ .+.++..++ +++.+|.||.|.|..+..
T Consensus 207 -~~d-~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~ 270 (460)
T PRK06292 207 -LED-PEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNT 270 (460)
T ss_pred -chh-HHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCC
Confidence 000 12233444555566 8988 899999986654 455444333 579999999999987654
No 317
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.81 E-value=9.4e-05 Score=69.78 Aligned_cols=93 Identities=25% Similarity=0.366 Sum_probs=66.1
Q ss_pred cCcEEEECchHHHHHHHHHHHHCC-------------CcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEE
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAG-------------LSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVV 75 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G-------------~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~ 75 (426)
..+++|||||+.|.-+|-.|+..- ++|.|+|+.+....
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp----------------------------- 205 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILP----------------------------- 205 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhcc-----------------------------
Confidence 357999999999999998887531 26666666553210
Q ss_pred EecCCCccccCCCccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCc-EEEcCEEEECCCCCC
Q 014377 76 HIDDNTKKDLDRPYGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGV-TIQAAVVLDATGFSR 150 (426)
Q Consensus 76 ~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~-~i~a~~vV~AdG~~s 150 (426)
.....+.+...+.+++.||++. ++.|++++.+ .|++.+|+ +|.|+.+|-|.|...
T Consensus 206 ----------------~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~----~v~~~~g~~~I~~~tvvWaaGv~a 262 (405)
T COG1252 206 ----------------MFPPKLSKYAERALEKLGVEVLLGTPVTEVTPD----GVTLKDGEEEIPADTVVWAAGVRA 262 (405)
T ss_pred ----------------CCCHHHHHHHHHHHHHCCCEEEcCCceEEECCC----cEEEccCCeeEecCEEEEcCCCcC
Confidence 0112234444556667999999 9999999865 36666776 599999999999764
No 318
>PLN02676 polyamine oxidase
Probab=97.78 E-value=3.3e-05 Score=76.16 Aligned_cols=42 Identities=12% Similarity=0.146 Sum_probs=37.0
Q ss_pred cEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCc
Q 014377 110 VKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRC 151 (426)
Q Consensus 110 v~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~ 151 (426)
.+++ +++|++|..+++++.|++.+|++++||.||.|...+..
T Consensus 245 ~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~vL 287 (487)
T PLN02676 245 PRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLGVL 287 (487)
T ss_pred CceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChHHh
Confidence 4577 99999999998899999999999999999999986543
No 319
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.77 E-value=2.6e-05 Score=76.92 Aligned_cols=36 Identities=28% Similarity=0.451 Sum_probs=33.7
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLI 45 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~ 45 (426)
|||+|||+||+|+++|..|++.|++|++||++....
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~ 36 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADS 36 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccC
Confidence 699999999999999999999999999999987653
No 320
>PLN02546 glutathione reductase
Probab=97.76 E-value=0.00033 Score=70.04 Aligned_cols=98 Identities=20% Similarity=0.242 Sum_probs=71.6
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
-+|+|||||..|+-+|..|++.|.+|+|+|+.+... + .
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il-~-~---------------------------------------- 290 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL-R-G---------------------------------------- 290 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc-c-c----------------------------------------
Confidence 479999999999999999999999999999865311 0 0
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEe-CCeEEEEEcCCcEEEcCEEEECCCCCCcc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHE-ESKSLLICNDGVTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~-~~~~~v~~~~g~~i~a~~vV~AdG~~s~~ 152 (426)
+ ...+...+.+.+.+.|++++ ++++++++.+ ++.+.+.+.+++...+|.||.|.|..+..
T Consensus 291 --~-d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt 352 (558)
T PLN02546 291 --F-DEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNT 352 (558)
T ss_pred --c-CHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCC
Confidence 0 01122344555667899999 8999999764 34455666555545589999999988755
No 321
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.76 E-value=2.4e-05 Score=77.95 Aligned_cols=38 Identities=34% Similarity=0.551 Sum_probs=35.3
Q ss_pred CCCCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 5 SKGLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 5 ~~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
.+..++|+||||+|.+|+++|..|+..|++|+|+|+.+
T Consensus 3 ~~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 3 EMKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred cccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 45678999999999999999999999999999999985
No 322
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.75 E-value=4.3e-05 Score=75.28 Aligned_cols=37 Identities=41% Similarity=0.622 Sum_probs=33.8
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCC
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL 44 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~ 44 (426)
...+|+||||||||+++|..|++.|++|+|||+.+..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~ 178 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRI 178 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 4579999999999999999999999999999998643
No 323
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.70 E-value=0.00045 Score=70.17 Aligned_cols=98 Identities=19% Similarity=0.214 Sum_probs=69.2
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
-.|+|||||..|+-+|..|++.|.+|+|+|+.+... +
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll-------------------------~------------------ 349 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL-------------------------P------------------ 349 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc-------------------------c------------------
Confidence 379999999999999999999999999999876321 0
Q ss_pred cccCHHHHHHHHHHHH-HhCCcEEE-EEEEEEEEEeCCe--EEEEEcC-------C--------cEEEcCEEEECCCCCC
Q 014377 90 GRVNRKLLKSKMLQKC-ITNGVKFH-QAKVIKVIHEESK--SLLICND-------G--------VTIQAAVVLDATGFSR 150 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~-~~~gv~~~-~~~v~~i~~~~~~--~~v~~~~-------g--------~~i~a~~vV~AdG~~s 150 (426)
.++. .+.+.+.+.. .+.|++++ +++|.+++.+++. +.+.+.+ + +++.+|.||.|.|...
T Consensus 350 -~~d~-eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~P 427 (659)
T PTZ00153 350 -LLDA-DVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKP 427 (659)
T ss_pred -cCCH-HHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECccc
Confidence 0011 1222233332 35799999 9999999866533 5554321 1 3799999999999876
Q ss_pred cc
Q 014377 151 CL 152 (426)
Q Consensus 151 ~~ 152 (426)
.+
T Consensus 428 nt 429 (659)
T PTZ00153 428 NT 429 (659)
T ss_pred CC
Confidence 54
No 324
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.69 E-value=5.3e-05 Score=77.75 Aligned_cols=37 Identities=35% Similarity=0.638 Sum_probs=33.8
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCC
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL 44 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~ 44 (426)
+..+|+||||||||+++|..|++.|++|+|+|+.+..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~ 362 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEI 362 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4579999999999999999999999999999997643
No 325
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.68 E-value=0.00048 Score=63.58 Aligned_cols=90 Identities=18% Similarity=0.272 Sum_probs=64.8
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
-+|+|||+|+.|+-+|..|++.+.+|+++++.+... .
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~----------------~--------------------------- 178 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR----------------A--------------------------- 178 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC----------------c---------------------------
Confidence 479999999999999999999999999999864210 0
Q ss_pred cccCHHHHHHHHHHHHHhC-CcEEE-EEEEEEEEEeCCeEEEEEc-----CCcEEEcCEEEECCCCCC
Q 014377 90 GRVNRKLLKSKMLQKCITN-GVKFH-QAKVIKVIHEESKSLLICN-----DGVTIQAAVVLDATGFSR 150 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~-gv~~~-~~~v~~i~~~~~~~~v~~~-----~g~~i~a~~vV~AdG~~s 150 (426)
. ..+.+.+.+. |++++ ++++++++.++....+.+. ++.++.+|.||.|.|..+
T Consensus 179 ----~----~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~ 238 (300)
T TIGR01292 179 ----E----KILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEP 238 (300)
T ss_pred ----C----HHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCC
Confidence 0 1123334455 99998 8899998865532233332 235799999999999654
No 326
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.67 E-value=3.9e-05 Score=64.04 Aligned_cols=131 Identities=27% Similarity=0.374 Sum_probs=73.2
Q ss_pred cCcEEEECchHHHHHHHHHHHH--CCCcEEEEcCCCCCCCCCcccchhH--HHhhcCc---hhhhhhccCCeEEEecCCC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSE--AGLSVCSIDPSPKLIWPNNYGVWVD--EFEAMDL---LDCLDTTWSGAVVHIDDNT 81 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~--~G~~V~liE~~~~~~~~~~~g~~~~--~l~~~~~---~~~~~~~~~~~~~~~~~~~ 81 (426)
..||+|||+|-+||++|+..++ ..++|.+||..-.++- |.|.- .+...-+ .+++.+... +-+
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGG----GaWLGGQLFSAMvvRKPAhLFL~Eig---vpY---- 144 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGG----GAWLGGQLFSAMVVRKPAHLFLQEIG---VPY---- 144 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCC----cccccchhhhhhhhcChHHHHHHHhC---CCc----
Confidence 4699999999999999999985 4789999998754432 33422 1111111 011110000 000
Q ss_pred ccccCCCcccc-CHHHHHHHHHHHHHh-CCcEEE-EEEEEEEEEeCC---e---------EEEEEc--------CCcEEE
Q 014377 82 KKDLDRPYGRV-NRKLLKSKMLQKCIT-NGVKFH-QAKVIKVIHEES---K---------SLLICN--------DGVTIQ 138 (426)
Q Consensus 82 ~~~~~~~~~~v-~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~~~---~---------~~v~~~--------~g~~i~ 138 (426)
+-...|-.+ +...|......+... ++++++ .+.|+++...++ . |++... |-..++
T Consensus 145 --edegdYVVVKHAALFtSTvmsk~LalPNVKLFNAtavEDLivk~g~~g~~rvaGVVTNWtLV~qnHgtQsCMDPNvie 222 (328)
T KOG2960|consen 145 --EDEGDYVVVKHAALFTSTVMSKVLALPNVKLFNATAVEDLIVKPGEKGEVRVAGVVTNWTLVTQNHGTQSCMDPNVIE 222 (328)
T ss_pred --ccCCCEEEEeeHHHHHHHHHHHHhcCCcceeechhhhhhhhcccCcCCceEEEEEEeeeEEeeeccCccccCCCCeee
Confidence 011233333 455555555555544 888888 556666654321 1 222221 235789
Q ss_pred cCEEEECCCCCCcc
Q 014377 139 AAVVLDATGFSRCL 152 (426)
Q Consensus 139 a~~vV~AdG~~s~~ 152 (426)
+.+||-++|...++
T Consensus 223 a~~vvS~tGHDGPF 236 (328)
T KOG2960|consen 223 AAVVVSTTGHDGPF 236 (328)
T ss_pred EEEEEEccCCCCCc
Confidence 99999998876543
No 327
>PLN02529 lysine-specific histone demethylase 1
Probab=97.63 E-value=7e-05 Score=76.46 Aligned_cols=38 Identities=32% Similarity=0.470 Sum_probs=34.4
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCC
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL 44 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~ 44 (426)
....||+|||||++|+++|..|+++|++|+|+|+++..
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~ 195 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRP 195 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccC
Confidence 35689999999999999999999999999999997653
No 328
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.63 E-value=0.00062 Score=64.28 Aligned_cols=100 Identities=25% Similarity=0.284 Sum_probs=78.5
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRP 88 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (426)
.-.|+++|+|..|+-+|..|...+.+|++|++.+.+. ++
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~-~~---------------------------------------- 251 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLL-PR---------------------------------------- 251 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccch-hh----------------------------------------
Confidence 4569999999999999999999999999999876321 00
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeC--CeEEEEEcCCcEEEcCEEEECCCCCCcc
Q 014377 89 YGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEE--SKSLLICNDGVTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 89 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~--~~~~v~~~~g~~i~a~~vV~AdG~~s~~ 152 (426)
+--..+.+.+.+..++.|+++. ++.+.+++.++ ....|.+.||+++.||+||.+.|+.+.+
T Consensus 252 ---lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t 315 (478)
T KOG1336|consen 252 ---LFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNT 315 (478)
T ss_pred ---hhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccccc
Confidence 0012244455666677999999 99999998765 3457889999999999999999987653
No 329
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.0017 Score=58.46 Aligned_cols=134 Identities=19% Similarity=0.246 Sum_probs=75.1
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccc---------hhHH-HhhcCc-----hhhhhhccC
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGV---------WVDE-FEAMDL-----LDCLDTTWS 71 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~---------~~~~-l~~~~~-----~~~~~~~~~ 71 (426)
..+||.||||||-+||++|...+..|.+|.++|--........||. .... +.+..+ .+.....|.
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW~ 96 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGWN 96 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCCC
Confidence 3579999999999999999999999999999985332222233432 2222 222222 122222232
Q ss_pred CeEEEecCCCccccCCCccccCHHHHHHHHHHHHHhCCc----EEEEEEEEEEEE-----eCCeEEEEEcCC--cEEEcC
Q 014377 72 GAVVHIDDNTKKDLDRPYGRVNRKLLKSKMLQKCITNGV----KFHQAKVIKVIH-----EESKSLLICNDG--VTIQAA 140 (426)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv----~~~~~~v~~i~~-----~~~~~~v~~~~g--~~i~a~ 140 (426)
... ..+. -+...|.+....+..+.+. .++..+|+-+.. +...+..+..+| +.+.|+
T Consensus 97 ~~e--------~~ik-----hdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~ 163 (503)
T KOG4716|consen 97 VDE--------QKIK-----HDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAE 163 (503)
T ss_pred Ccc--------cccc-----ccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecc
Confidence 111 1111 1345566666666655432 222333333221 223344444455 468899
Q ss_pred EEEECCCCCCccc
Q 014377 141 VVLDATGFSRCLV 153 (426)
Q Consensus 141 ~vV~AdG~~s~~r 153 (426)
.+|.|+|-+..-.
T Consensus 164 ~fvIatG~RPrYp 176 (503)
T KOG4716|consen 164 NFVIATGLRPRYP 176 (503)
T ss_pred eEEEEecCCCCCC
Confidence 9999999877543
No 330
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.58 E-value=9.6e-05 Score=75.95 Aligned_cols=37 Identities=30% Similarity=0.472 Sum_probs=34.1
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCC
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL 44 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~ 44 (426)
...+|+|||||++|+++|+.|++.|++|+|+|++..+
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~ 273 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARP 273 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccC
Confidence 4689999999999999999999999999999997654
No 331
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.53 E-value=0.00012 Score=74.90 Aligned_cols=37 Identities=30% Similarity=0.456 Sum_probs=33.7
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCC
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL 44 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~ 44 (426)
...+|+||||||||+++|..|++.|++|+|+|+.+..
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~ 228 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQA 228 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 3579999999999999999999999999999998653
No 332
>PLN02785 Protein HOTHEAD
Probab=97.52 E-value=9.8e-05 Score=74.26 Aligned_cols=36 Identities=33% Similarity=0.475 Sum_probs=32.7
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCC
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPK 43 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 43 (426)
...||+||||||.||+.+|..|++ +.+|+|||+++.
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 346999999999999999999999 699999999863
No 333
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.51 E-value=7.5e-05 Score=74.87 Aligned_cols=33 Identities=33% Similarity=0.514 Sum_probs=30.9
Q ss_pred cEEEECchHHHHHHHHHHHHCC-CcEEEEcCCCC
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAG-LSVCSIDPSPK 43 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G-~~V~liE~~~~ 43 (426)
|+||||||.||+.+|.+|++.| ++|+|||+++.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 8999999999999999999988 79999999863
No 334
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.50 E-value=0.00085 Score=66.94 Aligned_cols=90 Identities=20% Similarity=0.310 Sum_probs=65.7
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+... .
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~-------------------------~------------------ 389 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK-------------------------A------------------ 389 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC-------------------------h------------------
Confidence 489999999999999999999999999998654210 0
Q ss_pred cccCHHHHHHHHHHHHHh-CCcEEE-EEEEEEEEEeCCeEE-EEEcC---C--cEEEcCEEEECCCCCC
Q 014377 90 GRVNRKLLKSKMLQKCIT-NGVKFH-QAKVIKVIHEESKSL-LICND---G--VTIQAAVVLDATGFSR 150 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~~~~~~-v~~~~---g--~~i~a~~vV~AdG~~s 150 (426)
.+.+.+.+.+ .|++++ ++.+++++.+++.+. |++.+ + +++.+|.||.|.|..+
T Consensus 390 --------~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~P 450 (515)
T TIGR03140 390 --------DKVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVP 450 (515)
T ss_pred --------hHHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcC
Confidence 0112333444 699999 889999876655443 55433 2 4789999999999764
No 335
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.49 E-value=0.00016 Score=73.98 Aligned_cols=37 Identities=38% Similarity=0.649 Sum_probs=34.0
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCC
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL 44 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~ 44 (426)
...+|+||||||+|+++|..|++.|++|+|+|+.+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~ 345 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEI 345 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 4678999999999999999999999999999998753
No 336
>PRK10262 thioredoxin reductase; Provisional
Probab=97.46 E-value=0.00097 Score=62.33 Aligned_cols=94 Identities=20% Similarity=0.241 Sum_probs=67.6
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
-.|+|||+|..|+-+|..|++.|.+|+++++.+....
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~------------------------------------------- 183 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA------------------------------------------- 183 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCC-------------------------------------------
Confidence 4799999999999999999999999999998642100
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeE-EEEEcC------CcEEEcCEEEECCCCCC
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKS-LLICND------GVTIQAAVVLDATGFSR 150 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~-~v~~~~------g~~i~a~~vV~AdG~~s 150 (426)
+ ..+.+.+.+.+.+.|++++ ++.+++++.++.++ .|++.+ .+++.+|.||.|.|..+
T Consensus 184 ---~-~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p 248 (321)
T PRK10262 184 ---E-KILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSP 248 (321)
T ss_pred ---C-HHHHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCcc
Confidence 0 0122344555567899998 88999997654332 344332 14799999999999754
No 337
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.36 E-value=0.00021 Score=69.09 Aligned_cols=44 Identities=36% Similarity=0.406 Sum_probs=37.7
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCccc
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYG 51 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g 51 (426)
.--.|+|||+||||+++|..|++.|++|+++|+.+.++-.-.+|
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yG 165 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYG 165 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEec
Confidence 34689999999999999999999999999999998775444444
No 338
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=97.35 E-value=7.8e-05 Score=66.32 Aligned_cols=37 Identities=30% Similarity=0.501 Sum_probs=31.1
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHC-C-CcEEEEcCCCC
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEA-G-LSVCSIDPSPK 43 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~-G-~~V~liE~~~~ 43 (426)
...+.|+|||||-+|+.+|..+.+. | -+|.|+|+...
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 3578999999999999999999875 3 48999998653
No 339
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.33 E-value=0.00028 Score=65.46 Aligned_cols=38 Identities=34% Similarity=0.513 Sum_probs=32.5
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcE--EEEcCCCCC
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSV--CSIDPSPKL 44 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V--~liE~~~~~ 44 (426)
.+..+|+|||||++||++|++|++.+-+| +|+|..+..
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~Rv 48 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRV 48 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcc
Confidence 45689999999999999999999998766 559987764
No 340
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.31 E-value=0.00024 Score=72.96 Aligned_cols=52 Identities=33% Similarity=0.452 Sum_probs=43.8
Q ss_pred CCCCCCCCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccc
Q 014377 1 MYDPSKGLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGV 52 (426)
Q Consensus 1 ~~~~~~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~ 52 (426)
+|+|...+-..|.|||.|||||++|-.|-+.|+.|+|+||....+-.-.+|+
T Consensus 1777 p~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygi 1828 (2142)
T KOG0399|consen 1777 PCPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGI 1828 (2142)
T ss_pred cCCcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecC
Confidence 4566666778999999999999999999999999999999987755555554
No 341
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.30 E-value=0.00026 Score=71.50 Aligned_cols=37 Identities=41% Similarity=0.676 Sum_probs=33.6
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCC
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL 44 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~ 44 (426)
..-+|+|||+||+|+++|..|++.|++|+|+|+.+..
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~ 172 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKL 172 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4468999999999999999999999999999998753
No 342
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.30 E-value=0.0023 Score=60.98 Aligned_cols=91 Identities=32% Similarity=0.417 Sum_probs=62.7
Q ss_pred CcEEEECchHHHHHHHHHHHH----CC--CcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCcc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSE----AG--LSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKK 83 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~----~G--~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (426)
-.|+|||||++|+-+|..|++ .| .+|+|+ ..+... +
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l-------------------------~------------ 187 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLL-------------------------P------------ 187 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCccc-------------------------c------------
Confidence 379999999999999999985 34 367776 221100 0
Q ss_pred ccCCCccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCC
Q 014377 84 DLDRPYGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSR 150 (426)
Q Consensus 84 ~~~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s 150 (426)
.+ ...+...+.+.+.+.|++++ ++++++++. + .+.+.+|+++.+|.||.|.|...
T Consensus 188 -------~~-~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 188 -------GF-PAKVRRLVLRLLARRGIEVHEGAPVTRGPD--G--ALILADGRTLPADAILWATGARA 243 (364)
T ss_pred -------cC-CHHHHHHHHHHHHHCCCEEEeCCeeEEEcC--C--eEEeCCCCEEecCEEEEccCCCh
Confidence 00 01123344556667899999 888888753 2 46677888999999999999653
No 343
>PLN03000 amine oxidase
Probab=97.28 E-value=0.00037 Score=71.91 Aligned_cols=37 Identities=27% Similarity=0.442 Sum_probs=34.3
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCC
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL 44 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~ 44 (426)
...+|+|||||++|+.+|..|++.|++|+|+|++..+
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~ri 219 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRP 219 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcC
Confidence 4689999999999999999999999999999997765
No 344
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.27 E-value=0.0032 Score=59.44 Aligned_cols=57 Identities=26% Similarity=0.304 Sum_probs=47.0
Q ss_pred cCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCC-cEEEcCEEEECCCCCC
Q 014377 92 VNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDG-VTIQAAVVLDATGFSR 150 (426)
Q Consensus 92 v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g-~~i~a~~vV~AdG~~s 150 (426)
-....+.+.|...+.+.||+++ +++|+++ +++++.+.+.++ .+++||.||.|+|..|
T Consensus 83 ~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 83 MKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCCcc
Confidence 3678888999999999999999 9999999 334567776543 5799999999999876
No 345
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.25 E-value=0.0021 Score=63.24 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=30.5
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCC-cEEEEcCCC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGL-SVCSIDPSP 42 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~-~V~liE~~~ 42 (426)
.-.|+|||||..|+-+|..|++.|. +|+++++..
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 3479999999999999999999998 899998764
No 346
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.17 E-value=0.00039 Score=63.51 Aligned_cols=46 Identities=28% Similarity=0.372 Sum_probs=37.6
Q ss_pred CcCcEEEECchHHHHHHHHHHHH--CCCcEEEEcCCCCCCCCCcccch
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSE--AGLSVCSIDPSPKLIWPNNYGVW 53 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~--~G~~V~liE~~~~~~~~~~~g~~ 53 (426)
.+..|+|||+||||..+|..|.+ .+.+|.++|+.|.+--...+|..
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVA 66 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVA 66 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccC
Confidence 45689999999999999998887 47999999999987444455554
No 347
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.17 E-value=0.0043 Score=60.79 Aligned_cols=33 Identities=21% Similarity=0.361 Sum_probs=30.7
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
-.|+|||||..|+-+|..|++.|.+|+++++.+
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 479999999999999999999999999998864
No 348
>PRK13984 putative oxidoreductase; Provisional
Probab=97.15 E-value=0.00058 Score=69.66 Aligned_cols=37 Identities=32% Similarity=0.461 Sum_probs=33.7
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCC
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL 44 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~ 44 (426)
...+|+|||+||||+++|..|++.|++|+|+|+.+..
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~ 318 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKP 318 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4578999999999999999999999999999998743
No 349
>PLN02976 amine oxidase
Probab=97.13 E-value=0.00057 Score=73.33 Aligned_cols=37 Identities=32% Similarity=0.614 Sum_probs=33.6
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCC
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL 44 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~ 44 (426)
...+|+|||||++|+++|+.|++.|++|+|||+.+.+
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~v 728 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRI 728 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCC
Confidence 3579999999999999999999999999999987554
No 350
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.13 E-value=0.0042 Score=58.86 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=29.7
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCc-EEEEcCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLS-VCSIDPSP 42 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~-V~liE~~~ 42 (426)
-.|+|||+|+.|+-+|..|++.|.+ |+|+++.+
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 3799999999999999999999997 99998753
No 351
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.06 E-value=0.0037 Score=62.44 Aligned_cols=90 Identities=22% Similarity=0.299 Sum_probs=65.2
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
-+|+|||||..|+-+|..|+..+.+|+|+++.+.... .
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~--------------------------------~---------- 389 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA--------------------------------D---------- 389 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc--------------------------------c----------
Confidence 4799999999999999999999999999987652100 0
Q ss_pred cccCHHHHHHHHHHHHHh-CCcEEE-EEEEEEEEEeCCeEE-EEEc---CC--cEEEcCEEEECCCCCC
Q 014377 90 GRVNRKLLKSKMLQKCIT-NGVKFH-QAKVIKVIHEESKSL-LICN---DG--VTIQAAVVLDATGFSR 150 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~-~gv~~~-~~~v~~i~~~~~~~~-v~~~---~g--~~i~a~~vV~AdG~~s 150 (426)
..+.+...+ .|++++ ++.+++++.+++.+. +++. ++ +++.+|.|+.|.|..+
T Consensus 390 ---------~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p 449 (517)
T PRK15317 390 ---------QVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVP 449 (517)
T ss_pred ---------HHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCcc
Confidence 011223333 689999 899999987655432 4443 23 3689999999999764
No 352
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=97.06 E-value=0.00053 Score=67.33 Aligned_cols=38 Identities=34% Similarity=0.452 Sum_probs=34.3
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHC-CCcEEEEcCCCCC
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEA-GLSVCSIDPSPKL 44 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~-G~~V~liE~~~~~ 44 (426)
...||.||||||-|||.+|..|++. .++|+|+|++..+
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 4579999999999999999999985 7999999998765
No 353
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.00 E-value=0.0008 Score=63.06 Aligned_cols=133 Identities=21% Similarity=0.355 Sum_probs=69.0
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCC--cEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCc---
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGL--SVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTK--- 82 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~--~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--- 82 (426)
....|+|||||-++.-++..|.+.+- +|.++=|.+... +....-+... -.. .+.++.-+.-. ...+.
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~-~~d~s~f~ne--~f~-P~~v~~f~~l~----~~~R~~~l 260 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFF-PMDDSPFVNE--IFS-PEYVDYFYSLP----DEERRELL 260 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-E-B----CCHHG--GGS-HHHHHHHHTS-----HHHHHHHH
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccC-CCccccchhh--hcC-chhhhhhhcCC----HHHHHHHH
Confidence 45689999999999999999998764 899998876431 1111111000 000 00110000000 00000
Q ss_pred cccC-CCccccCHHHHHHH---HHH-HHHh-CCcEEE-EEEEEEEEEeC-CeEEEEEcC-----CcEEEcCEEEECCCC
Q 014377 83 KDLD-RPYGRVNRKLLKSK---MLQ-KCIT-NGVKFH-QAKVIKVIHEE-SKSLLICND-----GVTIQAAVVLDATGF 148 (426)
Q Consensus 83 ~~~~-~~~~~v~r~~l~~~---L~~-~~~~-~gv~~~-~~~v~~i~~~~-~~~~v~~~~-----g~~i~a~~vV~AdG~ 148 (426)
.... ..|+.|+...+.+. +.+ ++.. ..++++ +++|++++.++ +++.+.+.+ ..++++|.||.|||.
T Consensus 261 ~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 261 REQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATGY 339 (341)
T ss_dssp HHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE---E
T ss_pred HHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCCc
Confidence 0011 24556666555433 222 2222 357888 89999999887 488888765 257899999999996
No 354
>PRK12831 putative oxidoreductase; Provisional
Probab=96.97 E-value=0.012 Score=58.00 Aligned_cols=33 Identities=27% Similarity=0.390 Sum_probs=30.6
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
-.|+|||||..|+-+|..|.+.|.+|+++++..
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 479999999999999999999999999998764
No 355
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.89 E-value=0.0056 Score=65.92 Aligned_cols=90 Identities=14% Similarity=0.175 Sum_probs=66.0
Q ss_pred CcEEEECchHHHHHHHHHHHHCCC-cEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGL-SVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRP 88 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~-~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (426)
-.|+|||+|+.|+.+|..|++.|. .|+|+|..+...
T Consensus 318 k~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~~------------------------------------------- 354 (985)
T TIGR01372 318 KRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADVS------------------------------------------- 354 (985)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcchh-------------------------------------------
Confidence 479999999999999999999996 578888754210
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEc----CCcEEEcCEEEECCCCCCcc
Q 014377 89 YGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICN----DGVTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 89 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~----~g~~i~a~~vV~AdG~~s~~ 152 (426)
..+.+.+++.|++++ ++.++++..++....|++. +++++.||.|+.+.|..+..
T Consensus 355 ----------~~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt 413 (985)
T TIGR01372 355 ----------PEARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPVV 413 (985)
T ss_pred ----------HHHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCchh
Confidence 002345567899999 8888888755432233332 45689999999999977653
No 356
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.88 E-value=0.0096 Score=56.49 Aligned_cols=105 Identities=18% Similarity=0.322 Sum_probs=66.0
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCC--cEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGL--SVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLD 86 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~--~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
...++|||||++|..++..+.+.|. +.+++=+.....+.+. ..+.........-
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~-------------------~Ls~~~~~~~~~~----- 129 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRA-------------------RLSKFLLTVGEGL----- 129 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccch-------------------hcccceeeccccc-----
Confidence 5679999999999999999988765 4444433221111110 0011011000000
Q ss_pred CCccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCC
Q 014377 87 RPYGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSR 150 (426)
Q Consensus 87 ~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s 150 (426)
.....+-..+.|++++ ++.|+.++.... ++.+.+|+++..+.+|.|+|..+
T Consensus 130 -----------a~r~~e~Yke~gIe~~~~t~v~~~D~~~K--~l~~~~Ge~~kys~LilATGs~~ 181 (478)
T KOG1336|consen 130 -----------AKRTPEFYKEKGIELILGTSVVKADLASK--TLVLGNGETLKYSKLIIATGSSA 181 (478)
T ss_pred -----------cccChhhHhhcCceEEEcceeEEeecccc--EEEeCCCceeecceEEEeecCcc
Confidence 0001112345799998 999999987654 67889999999999999999943
No 357
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.76 E-value=0.014 Score=57.68 Aligned_cols=102 Identities=24% Similarity=0.311 Sum_probs=62.2
Q ss_pred CcEEEECchHHHHHHHHHHHHCCC-cEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGL-SVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRP 88 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~-~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (426)
-.|+|||||..|+-+|..+.+.|. +|++++..+.+.... +... ..+
T Consensus 282 k~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~----------------------------~~~~-----~~~ 328 (471)
T PRK12810 282 KHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRR----------------------------NKNN-----PWP 328 (471)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCcccc----------------------------cccc-----CCc
Confidence 469999999999999998888886 788776543211000 0000 000
Q ss_pred ccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEE-EE-----EcCC---------cEEEcCEEEECCCCCC
Q 014377 89 YGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSL-LI-----CNDG---------VTIQAAVVLDATGFSR 150 (426)
Q Consensus 89 ~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~-v~-----~~~g---------~~i~a~~vV~AdG~~s 150 (426)
. ... ....+.+.+.|++++ ++.++++..+++.++ |+ ..+| .++.+|.||.|.|..+
T Consensus 329 ~--~~~----~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p 400 (471)
T PRK12810 329 Y--WPM----KLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTG 400 (471)
T ss_pred c--cch----HHHHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCC
Confidence 0 000 011334556899998 888888875455442 32 2222 5789999999999653
No 358
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=96.75 E-value=0.0069 Score=55.72 Aligned_cols=99 Identities=19% Similarity=0.236 Sum_probs=71.9
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
-..+|||||..||-++.--.+.|-+|+++|-.+.... .
T Consensus 212 k~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~-----~------------------------------------- 249 (506)
T KOG1335|consen 212 KKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGG-----V------------------------------------- 249 (506)
T ss_pred ceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcc-----c-------------------------------------
Confidence 4689999999999999999999999999997543210 0
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCC-eEEEEEcC-----CcEEEcCEEEECCCCCCccc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEES-KSLLICND-----GVTIQAAVVLDATGFSRCLV 153 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~-~~~v~~~~-----g~~i~a~~vV~AdG~~s~~r 153 (426)
+| ..+.+.+.+-+...|+++. +++|+..+.+++ .+.+.+.+ .++++||++..|.|.+..+-
T Consensus 250 --mD-~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~ 317 (506)
T KOG1335|consen 250 --MD-GEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTE 317 (506)
T ss_pred --cC-HHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCccccc
Confidence 00 0112222333345799999 999999998876 56655433 25899999999999987653
No 359
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.75 E-value=0.0017 Score=62.37 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=30.2
Q ss_pred CCCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCC
Q 014377 6 KGLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL 44 (426)
Q Consensus 6 ~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~ 44 (426)
|+.+|||||+|-|+.-+.+|.+|++.|.+|+.+|+++.-
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yY 39 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYY 39 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCc
Confidence 578899999999999999999999999999999998764
No 360
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.67 E-value=0.0063 Score=60.76 Aligned_cols=97 Identities=25% Similarity=0.412 Sum_probs=72.0
Q ss_pred cEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCcc
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPYG 90 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (426)
.-+|||||+-|+-+|..|...|.+|.|++-.+.. ++ .
T Consensus 147 ~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~l------------Me------------------------r------- 183 (793)
T COG1251 147 KAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTL------------ME------------------------R------- 183 (793)
T ss_pred CcEEEccchhhhHHHHHHHhCCCceEEEeecchH------------HH------------------------H-------
Confidence 3699999999999999999999999999765421 00 0
Q ss_pred ccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCc
Q 014377 91 RVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRC 151 (426)
Q Consensus 91 ~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~ 151 (426)
++|+. -...|.....+.|++++ +...+.+..++....+.++||..+.||+||-|+|.+..
T Consensus 184 QLD~~-ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn 244 (793)
T COG1251 184 QLDRT-AGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPN 244 (793)
T ss_pred hhhhH-HHHHHHHHHHhhcceeecccchhhhhcCcceeeEeecCCCcccceeEEEecccccc
Confidence 11111 11244555556899988 87777776655556889999999999999999998764
No 361
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=96.62 E-value=0.24 Score=48.05 Aligned_cols=52 Identities=13% Similarity=0.059 Sum_probs=39.9
Q ss_pred HHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEE-cCCcEEEcCEEEECCCCCC
Q 014377 99 SKMLQKCITNGVKFH-QAKVIKVIHEESKSLLIC-NDGVTIQAAVVLDATGFSR 150 (426)
Q Consensus 99 ~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~-~~g~~i~a~~vV~AdG~~s 150 (426)
+.|.+.+.+.|++++ +++|++|+.+++++++.. .+|+++.||.||.|.....
T Consensus 201 ~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~~ 254 (419)
T TIGR03467 201 EPARRWLDSRGGEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPRH 254 (419)
T ss_pred HHHHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHHH
Confidence 335666666788999 999999998887765543 4677899999999876543
No 362
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=96.58 E-value=0.0073 Score=56.08 Aligned_cols=102 Identities=21% Similarity=0.304 Sum_probs=72.3
Q ss_pred cCcEEEECchHHHHHHHHHHHHC----CCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccc
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEA----GLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKD 84 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~----G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (426)
.-.|-|||+|.-|.-+|..|.+. |..|.-+ |...
T Consensus 347 k~siTIiGnGflgSELacsl~rk~r~~g~eV~Qv--------------------------------------F~Ek---- 384 (659)
T KOG1346|consen 347 KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQV--------------------------------------FEEK---- 384 (659)
T ss_pred cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEe--------------------------------------eccc----
Confidence 35699999999999999999873 2222111 0000
Q ss_pred cCCCccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCC--CCcccc
Q 014377 85 LDRPYGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGF--SRCLVQ 154 (426)
Q Consensus 85 ~~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~--~s~~r~ 154 (426)
.+..-|-...|-++-.+..++.||.++ +..|.++......+.+++.||.++..|+||.|.|- +|-+..
T Consensus 385 --~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~ 455 (659)
T KOG1346|consen 385 --YNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAE 455 (659)
T ss_pred --CChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhcc
Confidence 011113334455555677778999999 99999998888888999999999999999999995 444443
No 363
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.50 E-value=0.022 Score=57.48 Aligned_cols=33 Identities=30% Similarity=0.368 Sum_probs=30.8
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
-.|+|||||+.|+-+|..|++.|.+|+++++.+
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 479999999999999999999999999999875
No 364
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.47 E-value=0.024 Score=59.42 Aligned_cols=33 Identities=27% Similarity=0.414 Sum_probs=30.2
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCc-EEEEcCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLS-VCSIDPSP 42 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~-V~liE~~~ 42 (426)
-.|+|||||..|+-+|..+.+.|.+ |+++++.+
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 4799999999999999999999997 99998764
No 365
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=96.41 E-value=0.061 Score=51.88 Aligned_cols=36 Identities=22% Similarity=0.199 Sum_probs=31.0
Q ss_pred cCcEEEECchHHHHHHHHHHHHC----CCcEEEEcCCCCC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEA----GLSVCSIDPSPKL 44 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~----G~~V~liE~~~~~ 44 (426)
+.++=|||+|+|+|++|.+|-|- |-+|+++|+.+.+
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~ 41 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVP 41 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCC
Confidence 35678999999999999999884 6799999998754
No 366
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.13 E-value=0.0059 Score=51.61 Aligned_cols=32 Identities=38% Similarity=0.598 Sum_probs=28.2
Q ss_pred cEEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
.|.|||+|..|...|..+++.|++|+++|+++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 48999999999999999999999999999975
No 367
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.11 E-value=0.056 Score=55.63 Aligned_cols=33 Identities=24% Similarity=0.391 Sum_probs=29.4
Q ss_pred CcEEEECchHHHHHHHHHHHHCCC-cEEEEcCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGL-SVCSIDPSP 42 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~-~V~liE~~~ 42 (426)
-.|+|||||..|+-+|..+.+.|. +|+|+++.+
T Consensus 324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 479999999999999999999987 599998764
No 368
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.05 E-value=0.063 Score=52.92 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=29.6
Q ss_pred CcEEEECchHHHHHHHHHHHHCCC-cEEEEcCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGL-SVCSIDPSP 42 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~-~V~liE~~~ 42 (426)
-.|+|||||..|+-+|..+.+.|. +|+|+++.+
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 579999999999999999999995 799999865
No 369
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.04 E-value=0.0081 Score=49.58 Aligned_cols=32 Identities=28% Similarity=0.417 Sum_probs=30.1
Q ss_pred cEEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
.|.|+|||-.|.++|..|+++|.+|.|+.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 48999999999999999999999999999875
No 370
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=95.96 E-value=0.017 Score=56.65 Aligned_cols=33 Identities=12% Similarity=0.236 Sum_probs=30.5
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
-.|+|||+|.+|+=+|..|++.+.+|+++.+..
T Consensus 205 k~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 205 EVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 469999999999999999999999999998864
No 371
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.94 E-value=0.0092 Score=52.39 Aligned_cols=34 Identities=32% Similarity=0.563 Sum_probs=31.7
Q ss_pred cEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCC
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL 44 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~ 44 (426)
+++|||+|..|.++|..|++.|..|+++|+++..
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~ 35 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEER 35 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHH
Confidence 6899999999999999999999999999998653
No 372
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=95.93 E-value=0.098 Score=49.18 Aligned_cols=114 Identities=15% Similarity=0.194 Sum_probs=72.5
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccC
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLD 86 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
.....|+|+|.|-+|.++...|-..-++|+|+.++....+.... | +
T Consensus 53 ~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLL--------------------p--------------S 98 (491)
T KOG2495|consen 53 GKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLL--------------------P--------------S 98 (491)
T ss_pred CCCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeecc--------------------C--------------C
Confidence 34578999999999999999998889999999877643221000 0 0
Q ss_pred CCccccCHHHHHHHHHHHHHh--CCcEEEEEEEEEEEEeCCeEEEE--EcCC----cEEEcCEEEECCCCCCcccc
Q 014377 87 RPYGRVNRKLLKSKMLQKCIT--NGVKFHQAKVIKVIHEESKSLLI--CNDG----VTIQAAVVLDATGFSRCLVQ 154 (426)
Q Consensus 87 ~~~~~v~r~~l~~~L~~~~~~--~gv~~~~~~v~~i~~~~~~~~v~--~~~g----~~i~a~~vV~AdG~~s~~r~ 154 (426)
.+.+.|+-+.+.+-...-+.. .+++++.++.++++.+...+.+. ++++ -.+..|++|.|.|+.+..-.
T Consensus 99 ~~vGTve~rSIvEPIr~i~r~k~~~~~y~eAec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFg 174 (491)
T KOG2495|consen 99 TTVGTVELRSIVEPIRAIARKKNGEVKYLEAECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFG 174 (491)
T ss_pred ccccceeehhhhhhHHHHhhccCCCceEEecccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCC
Confidence 111222222222222222222 36677777777887777665443 4455 46889999999999886544
No 373
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.75 E-value=0.013 Score=54.39 Aligned_cols=49 Identities=27% Similarity=0.327 Sum_probs=41.4
Q ss_pred CCCCCCCCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCcccc
Q 014377 1 MYDPSKGLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPNNYGV 52 (426)
Q Consensus 1 ~~~~~~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~g~ 52 (426)
|.|. .+..|||||||-|..=..+|.++++.|.+|+=+|+++. +...|..
T Consensus 1 M~D~-lP~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~y--YGg~waS 49 (547)
T KOG4405|consen 1 MADI-LPEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEY--YGGNWAS 49 (547)
T ss_pred CCcC-CchhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccc--cCCcccc
Confidence 5555 67889999999999999999999999999999999886 4445543
No 374
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=95.64 E-value=0.091 Score=56.17 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=30.2
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
-+|+|||||..|+-+|..+.+.|.+|+++.+++
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 469999999999999999999999999998764
No 375
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=95.56 E-value=0.097 Score=52.64 Aligned_cols=111 Identities=21% Similarity=0.308 Sum_probs=72.6
Q ss_pred cCcEEEECchHHHHHHHHHHHH---CCCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCcccc
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSE---AGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDL 85 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~---~G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (426)
...++|||.|.||..+.-.+.+ .-++|+++-..+.+.+.+.. +.+.+.. ......+
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~-----------Ls~vl~~----------~~~~edi 61 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRIL-----------LSSVLAG----------EKTAEDI 61 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCcccccee-----------eccccCC----------CccHHHH
Confidence 4579999999999999987776 45789998666654332211 1111110 0000000
Q ss_pred CCCccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCcccc
Q 014377 86 DRPYGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRCLVQ 154 (426)
Q Consensus 86 ~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~~r~ 154 (426)
.+++ .+-+.+.|++++ +.+|+.+..+.. .|+++.|.++.+|-+|.|+|....+..
T Consensus 62 -----~l~~-------~dwy~~~~i~L~~~~~v~~idr~~k--~V~t~~g~~~~YDkLilATGS~pfi~P 117 (793)
T COG1251 62 -----SLNR-------NDWYEENGITLYTGEKVIQIDRANK--VVTTDAGRTVSYDKLIIATGSYPFILP 117 (793)
T ss_pred -----hccc-------hhhHHHcCcEEEcCCeeEEeccCcc--eEEccCCcEeecceeEEecCccccccC
Confidence 1111 122346899999 999999887643 577888999999999999999887654
No 376
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.54 E-value=0.018 Score=47.06 Aligned_cols=31 Identities=29% Similarity=0.564 Sum_probs=29.1
Q ss_pred EEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 12 LAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 12 ViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
|+|+|+|-.|+..|..|++.|.+|.++.+.+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999998864
No 377
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.52 E-value=0.021 Score=52.84 Aligned_cols=34 Identities=29% Similarity=0.507 Sum_probs=31.4
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPK 43 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 43 (426)
..|.|||+|.-|...|..+++.|++|+++|+.+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998763
No 378
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.48 E-value=0.018 Score=53.44 Aligned_cols=32 Identities=34% Similarity=0.459 Sum_probs=30.6
Q ss_pred cEEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
+|.|||+|..|..+|..|+++|++|+++|+.+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 69999999999999999999999999999875
No 379
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.42 E-value=0.02 Score=52.39 Aligned_cols=34 Identities=26% Similarity=0.505 Sum_probs=31.7
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPK 43 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 43 (426)
..|.|||+|.-|...|..+++.|++|+++|+.+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 3799999999999999999999999999998864
No 380
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.39 E-value=0.023 Score=52.78 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=31.1
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
...|+|||+|-.|.++|..|++.|.+|+++.|.+
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 3579999999999999999999999999998864
No 381
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.35 E-value=0.02 Score=56.48 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=31.3
Q ss_pred cEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCC
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL 44 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~ 44 (426)
.|+|||.|++|+++|..|++.|++|+++|+.+.+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 4899999999999999999999999999988653
No 382
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=95.33 E-value=0.12 Score=55.06 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=28.6
Q ss_pred CcEEEECchHHHHHHHHHHHHC-C-CcEEEEcCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEA-G-LSVCSIDPSP 42 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~-G-~~V~liE~~~ 42 (426)
-.|+|||||..|+-+|..+.+. | -+|+++.+++
T Consensus 669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~ 703 (1019)
T PRK09853 669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 703 (1019)
T ss_pred CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence 4799999999999999988876 5 3899999875
No 383
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.33 E-value=0.019 Score=56.84 Aligned_cols=33 Identities=30% Similarity=0.458 Sum_probs=30.7
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
-.|+|||+|++|+.+|..|++.|.+|+++|+.+
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 479999999999999999999999999999765
No 384
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.29 E-value=0.17 Score=52.33 Aligned_cols=33 Identities=18% Similarity=0.374 Sum_probs=28.9
Q ss_pred CcEEEECchHHHHHHHHHHHHCCC-cEEEEcCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGL-SVCSIDPSP 42 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~-~V~liE~~~ 42 (426)
-.|+|||||..|+-+|..+.+.|. +|+++.+.+
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~ 502 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD 502 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence 379999999999999998888886 699988764
No 385
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=95.26 E-value=0.042 Score=51.52 Aligned_cols=47 Identities=21% Similarity=0.259 Sum_probs=33.1
Q ss_pred HHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCC--cEEEcCEEEECCCCCC
Q 014377 102 LQKCITNGVKFH-QAKVIKVIHEESKSLLICNDG--VTIQAAVVLDATGFSR 150 (426)
Q Consensus 102 ~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g--~~i~a~~vV~AdG~~s 150 (426)
.++..+.|+++. ++.|.+++.+ .+.+.+.|| ++|-.-.+|.|+|...
T Consensus 280 e~~f~~~~I~~~~~t~Vk~V~~~--~I~~~~~~g~~~~iPYG~lVWatG~~~ 329 (491)
T KOG2495|consen 280 ENQFVRDGIDLDTGTMVKKVTEK--TIHAKTKDGEIEEIPYGLLVWATGNGP 329 (491)
T ss_pred HHHhhhccceeecccEEEeecCc--EEEEEcCCCceeeecceEEEecCCCCC
Confidence 334445789988 8888777643 455556666 4688899999999654
No 386
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.20 E-value=0.026 Score=51.95 Aligned_cols=34 Identities=29% Similarity=0.423 Sum_probs=31.4
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
...|.|||+|.-|..+|..|+++|++|+++|+.+
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 4569999999999999999999999999999875
No 387
>PLN02676 polyamine oxidase
Probab=95.11 E-value=0.81 Score=45.41 Aligned_cols=39 Identities=23% Similarity=0.514 Sum_probs=34.8
Q ss_pred CCCcCcEEEECchHHHHHHHHHHHHCCC-cEEEEcCCCCC
Q 014377 6 KGLVVDLAVVGGGPAGLAVAQQVSEAGL-SVCSIDPSPKL 44 (426)
Q Consensus 6 ~~~~~dViIvGgG~aGl~~A~~La~~G~-~V~liE~~~~~ 44 (426)
....+||+|||||++|+++|..|++.|. +|+|+|++...
T Consensus 23 ~~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~ 62 (487)
T PLN02676 23 AKPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRI 62 (487)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCC
Confidence 3457899999999999999999999998 69999998764
No 388
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=95.07 E-value=0.084 Score=52.68 Aligned_cols=39 Identities=26% Similarity=0.383 Sum_probs=29.1
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCCCCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKLIWPN 48 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~ 48 (426)
-.|+|||+|.+|+=+|..|++..-+|.+.=|+..-..++
T Consensus 184 KrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr 222 (531)
T PF00743_consen 184 KRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPR 222 (531)
T ss_dssp SEEEEESSSHHHHHHHHHHTTTSCCEEEECC--------
T ss_pred CEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccc
Confidence 469999999999999999999999999998876544444
No 389
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.01 E-value=0.018 Score=48.81 Aligned_cols=32 Identities=34% Similarity=0.538 Sum_probs=26.7
Q ss_pred cEEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
.|.|||.|-.|+.+|..||+.|++|+.+|.++
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 68999999999999999999999999999875
No 390
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.82 E-value=0.037 Score=51.19 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=30.6
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
.+|+|+|+|..|...|..|++.|.+|+++.|..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 469999999999999999999999999999863
No 391
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.82 E-value=0.038 Score=50.67 Aligned_cols=33 Identities=30% Similarity=0.370 Sum_probs=30.8
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
..|.|||+|..|..+|..|++.|++|+++|+++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 469999999999999999999999999999875
No 392
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.80 E-value=0.045 Score=45.02 Aligned_cols=33 Identities=21% Similarity=0.390 Sum_probs=29.7
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcC
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDP 40 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~ 40 (426)
..-.|+|||||..|...|..|.+.|.+|+||.+
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 346799999999999999999999999999954
No 393
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.76 E-value=0.041 Score=47.39 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=30.7
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCC
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPS 41 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~ 41 (426)
....|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 3568999999999999999999999999999764
No 394
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=94.73 E-value=0.16 Score=48.96 Aligned_cols=105 Identities=22% Similarity=0.328 Sum_probs=63.2
Q ss_pred EEEECchHHHHHHHHHHHHC--CCcEEEEcCCCCCCCCCcccchhHHHhhcCchhhhhhccCCeEEEecCCCccccCCCc
Q 014377 12 LAVVGGGPAGLAVAQQVSEA--GLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLDRPY 89 (426)
Q Consensus 12 ViIvGgG~aGl~~A~~La~~--G~~V~liE~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (426)
++|||+|++|+.+|..|.+. +.++.++...+...+.. ++..... ..... ....+
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~-~~~~~~~----------~~~~~---------~~~~~---- 56 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYR-CPLSLYV----------GGGIA---------SLEDL---- 56 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCC-CccchHH----------hcccC---------CHHHh----
Confidence 58999999999999988874 56888777765432211 1111000 00000 00000
Q ss_pred cccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCcc
Q 014377 90 GRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 90 ~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~~ 152 (426)
..... .. .+.++++. +++|+++..... .+.+.+| ++..|.+|.|+|.....
T Consensus 57 -~~~~~-------~~-~~~~i~~~~~~~v~~id~~~~--~v~~~~g-~~~yd~LvlatGa~~~~ 108 (415)
T COG0446 57 -RYPPR-------FN-RATGIDVRTGTEVTSIDPENK--VVLLDDG-EIEYDYLVLATGARPRP 108 (415)
T ss_pred -cccch-------hH-HhhCCEEeeCCEEEEecCCCC--EEEECCC-cccccEEEEcCCCcccC
Confidence 00000 11 24578877 888988876554 4556666 89999999999987654
No 395
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.60 E-value=0.04 Score=50.56 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=30.7
Q ss_pred cEEEECchHHHHHHHHHHHHCCCcEEEEcCCCC
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPK 43 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 43 (426)
.|.|||+|..|..+|..|++.|++|+++|+++.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 589999999999999999999999999998753
No 396
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.59 E-value=0.046 Score=51.19 Aligned_cols=32 Identities=31% Similarity=0.434 Sum_probs=30.3
Q ss_pred cEEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
.|.|||+|.-|..+|..|++.|++|+++++.+
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 69999999999999999999999999999864
No 397
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=94.56 E-value=0.32 Score=52.02 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=29.1
Q ss_pred cCcEEEECchHHHHHHHHHHHHC-CC-cEEEEcCCC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEA-GL-SVCSIDPSP 42 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~-G~-~V~liE~~~ 42 (426)
.-.|+|||||..|+-+|..+.+. |. +|+++++..
T Consensus 666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 34799999999999999988875 86 799999865
No 398
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.54 E-value=0.059 Score=46.51 Aligned_cols=33 Identities=30% Similarity=0.379 Sum_probs=30.4
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
-.|+|||||.+|..-+..|.+.|.+|+|+++..
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 479999999999999999999999999998754
No 399
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.47 E-value=0.28 Score=49.68 Aligned_cols=59 Identities=19% Similarity=0.251 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHhCCcEEE-EEEEEEEEEe-CCeE-EEE---EcCCc--EEEcCEEEECCCCCCcc
Q 014377 94 RKLLKSKMLQKCITNGVKFH-QAKVIKVIHE-ESKS-LLI---CNDGV--TIQAAVVLDATGFSRCL 152 (426)
Q Consensus 94 r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~-~~~~-~v~---~~~g~--~i~a~~vV~AdG~~s~~ 152 (426)
-..+...|.+.+.+.|++++ ++.++++..+ ++.+ .|. ..+|+ .+.|+.||.|+|..+.+
T Consensus 125 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 125 GHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGRI 191 (570)
T ss_pred HHHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcccc
Confidence 35788889888888999999 8999999875 4443 232 23553 68899999999987754
No 400
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.45 E-value=0.049 Score=42.22 Aligned_cols=32 Identities=34% Similarity=0.681 Sum_probs=28.6
Q ss_pred EEEECchHHHHHHHHHHHHCCCcEEEEcCCCC
Q 014377 12 LAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPK 43 (426)
Q Consensus 12 ViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 43 (426)
|+|+|.|..|..++..|.+.+.+|+++|+++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 79999999999999999998889999999863
No 401
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.36 E-value=0.062 Score=52.81 Aligned_cols=34 Identities=32% Similarity=0.421 Sum_probs=31.6
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
.-.|+|+|+|.+|+.+|..|++.|++|+++|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4579999999999999999999999999999875
No 402
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.36 E-value=0.055 Score=49.47 Aligned_cols=33 Identities=33% Similarity=0.518 Sum_probs=30.8
Q ss_pred cEEEECchHHHHHHHHHHHHCCCcEEEEcCCCC
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPK 43 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 43 (426)
.|.|||+|..|..+|..+++.|++|+++|+++.
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 699999999999999999999999999998753
No 403
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=94.30 E-value=0.04 Score=44.01 Aligned_cols=32 Identities=31% Similarity=0.587 Sum_probs=28.1
Q ss_pred EEEECchHHHHHHHHHHHHCCCcEEEEcCCCC
Q 014377 12 LAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPK 43 (426)
Q Consensus 12 ViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 43 (426)
++|+|+|+.+..+|..++..|++|+|+|.++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999998865
No 404
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.15 E-value=0.063 Score=49.32 Aligned_cols=33 Identities=33% Similarity=0.475 Sum_probs=30.8
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
..|.|||+|.-|..+|..|++.|++|+++|+.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 469999999999999999999999999999875
No 405
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.13 E-value=0.043 Score=41.59 Aligned_cols=35 Identities=37% Similarity=0.473 Sum_probs=31.0
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
....|+|||||..|..-+..|.+.|.+|+|+.+..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 45679999999999999999999999999998763
No 406
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.12 E-value=0.064 Score=49.63 Aligned_cols=30 Identities=33% Similarity=0.439 Sum_probs=28.9
Q ss_pred cEEEECchHHHHHHHHHHHHCCCcEEEEcC
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAGLSVCSIDP 40 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G~~V~liE~ 40 (426)
.|+|||+|..|..+|..|++.|.+|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 599999999999999999999999999988
No 407
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=94.12 E-value=0.068 Score=49.25 Aligned_cols=34 Identities=35% Similarity=0.605 Sum_probs=31.2
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPK 43 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 43 (426)
-.|.|||+|.-|..+|..|++.|++|.++|+++.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 38 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA 38 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 4699999999999999999999999999998753
No 408
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=93.98 E-value=0.069 Score=49.37 Aligned_cols=32 Identities=22% Similarity=0.398 Sum_probs=29.8
Q ss_pred cEEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
.|+|||+|-.|..+|..|++.|.+|+++++++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 58999999999999999999999999999853
No 409
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.91 E-value=0.081 Score=49.16 Aligned_cols=33 Identities=33% Similarity=0.540 Sum_probs=30.6
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
..|.|||+|..|..+|..|++.|++|+++|+.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 469999999999999999999999999999865
No 410
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=93.90 E-value=0.1 Score=48.44 Aligned_cols=38 Identities=18% Similarity=0.174 Sum_probs=33.1
Q ss_pred CCCcCcEEEECchHHHHHHHHHHHHCCC-cEEEEcCCCC
Q 014377 6 KGLVVDLAVVGGGPAGLAVAQQVSEAGL-SVCSIDPSPK 43 (426)
Q Consensus 6 ~~~~~dViIvGgG~aGl~~A~~La~~G~-~V~liE~~~~ 43 (426)
|-....|.|||+|-.|..+|+.++..|+ +++|+|..+.
T Consensus 3 ~~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 3 MIKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 3344689999999999999999999996 9999998765
No 411
>PRK13984 putative oxidoreductase; Provisional
Probab=93.88 E-value=0.52 Score=48.25 Aligned_cols=34 Identities=15% Similarity=-0.019 Sum_probs=28.2
Q ss_pred CceeEeeccCCCCCCCCcHHHHHHHHhcHHHHHHHHHhcC
Q 014377 275 QRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVRSLS 314 (426)
Q Consensus 275 ~~v~liGdAa~~~~P~~G~G~~~a~~~a~~la~~i~~~l~ 314 (426)
++|+.+||+++. ..+..|+.+|..+|..|.+.|.
T Consensus 569 ~gVfAaGD~~~~------~~~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 569 PWLFAGGDIVHG------PDIIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred CCEEEecCcCCc------hHHHHHHHHHHHHHHHHHHHhc
Confidence 679999999753 3467899999999999998775
No 412
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.84 E-value=0.1 Score=44.93 Aligned_cols=34 Identities=26% Similarity=0.366 Sum_probs=31.2
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCC-cEEEEcCCC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGL-SVCSIDPSP 42 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~-~V~liE~~~ 42 (426)
...|+|||+|-.|+.+|..|++.|+ +++|+|.+.
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 4679999999999999999999999 699999873
No 413
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=93.68 E-value=0.41 Score=46.71 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=35.6
Q ss_pred HhCCcEEE-EEEEEEEEEeCCeEEEEEcC-CcEEE--cCEEEECCCCCCc
Q 014377 106 ITNGVKFH-QAKVIKVIHEESKSLLICND-GVTIQ--AAVVLDATGFSRC 151 (426)
Q Consensus 106 ~~~gv~~~-~~~v~~i~~~~~~~~v~~~~-g~~i~--a~~vV~AdG~~s~ 151 (426)
.+.|++++ +++|+++..+++.+.+...+ ++++. +|.||.|+|....
T Consensus 55 ~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p~ 104 (427)
T TIGR03385 55 KKRGIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPI 104 (427)
T ss_pred HhcCCeEEecCEEEEEECCCCEEEEEECCCCCEEecCCCEEEECCCCCCC
Confidence 45789987 88999998777766665443 45777 9999999998654
No 414
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=93.66 E-value=0.091 Score=49.51 Aligned_cols=31 Identities=26% Similarity=0.469 Sum_probs=29.6
Q ss_pred cEEEECchHHHHHHHHHHHHCCCcEEEEcCC
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAGLSVCSIDPS 41 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G~~V~liE~~ 41 (426)
+|.|||+|..|..+|..|++.|++|.++++.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 5999999999999999999999999999985
No 415
>PRK04148 hypothetical protein; Provisional
Probab=93.51 E-value=0.062 Score=42.48 Aligned_cols=33 Identities=30% Similarity=0.416 Sum_probs=30.2
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPK 43 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 43 (426)
..+++||.| .|..+|..|++.|.+|+.+|.++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 569999999 899999999999999999998864
No 416
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=93.49 E-value=0.12 Score=47.64 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=34.5
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCC
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL 44 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~ 44 (426)
..|||+|+|-|+.-+.++.+|+..|.+|+.||+++.-
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~Y 41 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYY 41 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCcc
Confidence 3799999999999999999999999999999998764
No 417
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.44 E-value=0.054 Score=50.53 Aligned_cols=33 Identities=27% Similarity=0.477 Sum_probs=30.8
Q ss_pred cEEEECchHHHHHHHHHHHHCCCcEEEEcCCCC
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPK 43 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 43 (426)
.|.|||.|=+||+.|..|++.|++|+.+|..+.
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 689999999999999999999999999998753
No 418
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.40 E-value=0.13 Score=48.97 Aligned_cols=35 Identities=26% Similarity=0.398 Sum_probs=31.7
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
...+|+|||+|.+|..+|..|.+.|.+|.++|+.+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 34679999999999999999999999999999864
No 419
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=93.36 E-value=0.099 Score=50.06 Aligned_cols=34 Identities=26% Similarity=0.285 Sum_probs=31.1
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
.-.|+|+|+|+.|+.+|..+...|.+|+++|..+
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 3479999999999999999999999999999875
No 420
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.36 E-value=0.11 Score=48.14 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=29.9
Q ss_pred cEEEECchHHHHHHHHHHHHCCC--cEEEEcCCCC
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAGL--SVCSIDPSPK 43 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G~--~V~liE~~~~ 43 (426)
+|.|||+|.+|.++|+.|+..|+ .|.++|+.+.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence 69999999999999999999994 8999998753
No 421
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=93.34 E-value=0.097 Score=50.64 Aligned_cols=34 Identities=24% Similarity=0.329 Sum_probs=31.4
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPK 43 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 43 (426)
..|.|||.|-.|+.+|..|++.|++|+++|+++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 4699999999999999999999999999998754
No 422
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=93.16 E-value=0.13 Score=51.16 Aligned_cols=36 Identities=31% Similarity=0.485 Sum_probs=32.5
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCC
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPK 43 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 43 (426)
+.-.|.|||+|.-|.-+|..|++.|++|+++|+.+.
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 345699999999999999999999999999998764
No 423
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=93.15 E-value=0.12 Score=51.35 Aligned_cols=33 Identities=36% Similarity=0.587 Sum_probs=30.9
Q ss_pred cEEEECchHHHHHHHHHHHHCCCcEEEEcCCCC
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPK 43 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 43 (426)
.|.|||+|.-|...|..|+++|++|+++|+.+.
T Consensus 6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~ 38 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE 38 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 699999999999999999999999999998753
No 424
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=93.12 E-value=0.17 Score=46.98 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=32.9
Q ss_pred CCCcCcEEEECchHHHHHHHHHHHHCCC--cEEEEcCCCC
Q 014377 6 KGLVVDLAVVGGGPAGLAVAQQVSEAGL--SVCSIDPSPK 43 (426)
Q Consensus 6 ~~~~~dViIvGgG~aGl~~A~~La~~G~--~V~liE~~~~ 43 (426)
+.....|.|||+|-+|.++|+.|+..|+ +++|+|....
T Consensus 3 ~~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~ 42 (315)
T PRK00066 3 KKQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE 42 (315)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence 4455799999999999999999999998 7999998643
No 425
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.10 E-value=0.1 Score=51.39 Aligned_cols=35 Identities=31% Similarity=0.454 Sum_probs=31.8
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
..-.|+|+|+|++|+.++..+...|.+|.++|.++
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35689999999999999999999999999999875
No 426
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=93.06 E-value=0.13 Score=41.13 Aligned_cols=34 Identities=21% Similarity=0.454 Sum_probs=30.4
Q ss_pred CcEEEECchHHHHHHHHHHHHCCC-cEEEEcCCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGL-SVCSIDPSPK 43 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~-~V~liE~~~~ 43 (426)
..|+|+|+|-.|+.+|..|++.|. +++|+|.+..
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV 37 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence 579999999999999999999999 7999998754
No 427
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=93.03 E-value=0.14 Score=42.68 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=29.9
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
.+..|+|+|+|.+|..+|..|...|.+|+++|..+
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 35789999999999999999999999999999764
No 428
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.02 E-value=0.16 Score=47.08 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=31.4
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
...|.|||+|-.|..+|..|++.|++|.++++.+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3569999999999999999999999999999875
No 429
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=93.00 E-value=0.84 Score=47.04 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=28.7
Q ss_pred CcEEEECchHHHHHHHHHHHHCCC-cEEEEcCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGL-SVCSIDPSP 42 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~-~V~liE~~~ 42 (426)
-.|+|||||..|+-.|..+.+.|. +|+++++.+
T Consensus 452 k~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~ 485 (639)
T PRK12809 452 KRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRD 485 (639)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 479999999999999988888885 799998764
No 430
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=92.99 E-value=0.15 Score=45.32 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=33.7
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCC
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPK 43 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 43 (426)
.+...++|+|+|+.+..+|..++..|++|+|+|.++.
T Consensus 98 ~p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 98 PPAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 4568999999999999999999999999999997765
No 431
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=92.99 E-value=0.38 Score=45.17 Aligned_cols=132 Identities=25% Similarity=0.281 Sum_probs=76.3
Q ss_pred CCcCcEEEECchHHHHHHHHHHH--HCCCcEEEEcCCCCCCCCCc---ccchhHHHhhcCchhhhhhccCCeEEEecCCC
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVS--EAGLSVCSIDPSPKLIWPNN---YGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNT 81 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La--~~G~~V~liE~~~~~~~~~~---~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (426)
+.....+|||||-+..+++.... ..+.+|++|-..+...+.+. -..|-.. .......+--..|.+.. +
T Consensus 176 p~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~-dpn~~k~lrfkqwsGke------R 248 (659)
T KOG1346|consen 176 PKHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYG-DPNSAKKLRFKQWSGKE------R 248 (659)
T ss_pred cccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecC-CCChhhheeecccCCcc------c
Confidence 34577899999988777665554 34778888866655433332 1111100 00000000011222211 0
Q ss_pred ccccCCCccccCHHHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCCCcc
Q 014377 82 KKDLDRPYGRVNRKLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFSRCL 152 (426)
Q Consensus 82 ~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~s~~ 152 (426)
...+..+--.|+..+|.. +...|+.+. +.+|+.+...+. .|.+.||.+|..|-...|+|....-
T Consensus 249 siffepd~FfvspeDLp~-----~~nGGvAvl~G~kvvkid~~d~--~V~LnDG~~I~YdkcLIATG~~Pk~ 313 (659)
T KOG1346|consen 249 SIFFEPDGFFVSPEDLPK-----AVNGGVAVLRGRKVVKIDEEDK--KVILNDGTTIGYDKCLIATGVRPKK 313 (659)
T ss_pred eeEecCCcceeChhHCcc-----cccCceEEEeccceEEeecccC--eEEecCCcEeehhheeeecCcCccc
Confidence 011122222577777543 445788888 888988876654 5778999999999999999987653
No 432
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=92.89 E-value=0.21 Score=39.97 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=30.7
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCCc-EEEEcCC
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGLS-VCSIDPS 41 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~~-V~liE~~ 41 (426)
..-.|+|||+|-+|.+++..|++.|.+ |+|+-|.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 346799999999999999999999998 9999875
No 433
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.79 E-value=0.12 Score=48.28 Aligned_cols=32 Identities=25% Similarity=0.383 Sum_probs=29.9
Q ss_pred cEEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
+|.|||+|-.|.++|..|++.|.+|.++.|++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 58999999999999999999999999999854
No 434
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=92.70 E-value=0.18 Score=46.59 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=29.6
Q ss_pred CcEEEECchHHHHHHHHHHHHCCC-cEEEEcCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGL-SVCSIDPSP 42 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~-~V~liE~~~ 42 (426)
..|.|||+|..|+.+|+.|+..|+ +|+++|...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 369999999999999999999887 899999843
No 435
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=92.60 E-value=0.051 Score=50.50 Aligned_cols=39 Identities=23% Similarity=0.231 Sum_probs=35.4
Q ss_pred CCCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCCC
Q 014377 6 KGLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPKL 44 (426)
Q Consensus 6 ~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~ 44 (426)
|+..|||+|+|-|..=+.++..|+..|-+|+.+||++.-
T Consensus 1 mdeeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yY 39 (440)
T KOG1439|consen 1 MDEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYY 39 (440)
T ss_pred CCCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCC
Confidence 445699999999999999999999999999999998754
No 436
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=92.56 E-value=0.18 Score=47.16 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=31.7
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCC-cEEEEcCCCC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGL-SVCSIDPSPK 43 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~-~V~liE~~~~ 43 (426)
...|+|||+|-.|..+|..|++.|. +++|+|++..
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~v 59 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYV 59 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 4679999999999999999999998 8999998753
No 437
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=92.56 E-value=0.13 Score=46.87 Aligned_cols=32 Identities=19% Similarity=0.345 Sum_probs=29.9
Q ss_pred cEEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
.|.|||.|..|.++|..|++.|.+|.++++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 58999999999999999999999999999864
No 438
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=92.42 E-value=1.5 Score=47.56 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=27.8
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCc-EEEEcCC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLS-VCSIDPS 41 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~-V~liE~~ 41 (426)
.-+|+|||||..|+-+|..+.+.|.+ |+++.+.
T Consensus 571 Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr 604 (1006)
T PRK12775 571 GKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRR 604 (1006)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeec
Confidence 35799999999999999999999985 6777654
No 439
>PLN02852 ferredoxin-NADP+ reductase
Probab=92.41 E-value=1.3 Score=43.65 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.9
Q ss_pred CcEEEECchHHHHHHHHHHHHC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEA 31 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~ 31 (426)
-.|+|||+|..|+-+|..|.+.
T Consensus 167 k~VvVIGgGnvAlD~Ar~L~~~ 188 (491)
T PLN02852 167 DTAVVLGQGNVALDCARILLRP 188 (491)
T ss_pred CEEEEECCCHHHHHHHHHHHhC
Confidence 4799999999999999998876
No 440
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=92.37 E-value=0.22 Score=44.78 Aligned_cols=36 Identities=25% Similarity=0.352 Sum_probs=31.8
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCC-cEEEEcCCCC
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGL-SVCSIDPSPK 43 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~-~V~liE~~~~ 43 (426)
....|+|||+|-.|+.+|..|++.|+ +++|+|.+..
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 34689999999999999999999995 8999998753
No 441
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=92.36 E-value=0.23 Score=42.79 Aligned_cols=35 Identities=23% Similarity=0.431 Sum_probs=31.8
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCC-cEEEEcCCC
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGL-SVCSIDPSP 42 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~-~V~liE~~~ 42 (426)
....|+|||+|-.|..+|..|++.|. +++++|.+.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 35689999999999999999999998 899999875
No 442
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=92.28 E-value=0.16 Score=47.39 Aligned_cols=32 Identities=31% Similarity=0.459 Sum_probs=30.2
Q ss_pred cEEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
+|.|||+|..|..+|..|++.|++|.++++.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 69999999999999999999999999999864
No 443
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=92.26 E-value=0.16 Score=42.08 Aligned_cols=33 Identities=33% Similarity=0.576 Sum_probs=28.9
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
..|-|||-|-.|..+|..|.+.|++|.++|+.+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 469999999999999999999999999999875
No 444
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=92.22 E-value=0.24 Score=39.91 Aligned_cols=32 Identities=28% Similarity=0.549 Sum_probs=28.9
Q ss_pred cEEEECc-hHHHHHHHHHHHHCCC--cEEEEcCCC
Q 014377 11 DLAVVGG-GPAGLAVAQQVSEAGL--SVCSIDPSP 42 (426)
Q Consensus 11 dViIvGg-G~aGl~~A~~La~~G~--~V~liE~~~ 42 (426)
+|.|||+ |-.|.++|+.|...++ ++.|+|..+
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 6999999 9999999999998875 699999874
No 445
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=92.22 E-value=0.18 Score=46.69 Aligned_cols=33 Identities=27% Similarity=0.451 Sum_probs=29.6
Q ss_pred CcEEEECchHHHHHHHHHHHHCCC--cEEEEcCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGL--SVCSIDPSP 42 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~--~V~liE~~~ 42 (426)
..|.|||+|..|.++|..|++.|+ +|.++++.+
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 479999999999999999999985 899999864
No 446
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=92.04 E-value=0.26 Score=41.35 Aligned_cols=32 Identities=19% Similarity=0.379 Sum_probs=29.3
Q ss_pred cEEEECchHHHHHHHHHHHHCCCc-EEEEcCCC
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAGLS-VCSIDPSP 42 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G~~-V~liE~~~ 42 (426)
.|+|||+|-.|..+|..|++.|.. ++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 489999999999999999999995 99999875
No 447
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=92.04 E-value=0.16 Score=49.24 Aligned_cols=33 Identities=30% Similarity=0.512 Sum_probs=30.7
Q ss_pred cEEEECchHHHHHHHHHHHHCCCcEEEEcCCCC
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPK 43 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 43 (426)
.|.|||.|-.|+.+|..|++.|++|+++|+++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 599999999999999999999999999998754
No 448
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=92.02 E-value=0.24 Score=46.47 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=31.5
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCC-cEEEEcCCC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGL-SVCSIDPSP 42 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~-~V~liE~~~ 42 (426)
...|+|||+|-.|..+|..|++.|. +++|+|.+.
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 4689999999999999999999999 999999864
No 449
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=91.95 E-value=0.12 Score=45.29 Aligned_cols=31 Identities=35% Similarity=0.572 Sum_probs=25.6
Q ss_pred EEEECchHHHHHHHHHHHHC--CCcEEEEcCCC
Q 014377 12 LAVVGGGPAGLAVAQQVSEA--GLSVCSIDPSP 42 (426)
Q Consensus 12 ViIvGgG~aGl~~A~~La~~--G~~V~liE~~~ 42 (426)
.+|||||+||.++|-.|+.. ..+|+|+-..+
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass 34 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASS 34 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccH
Confidence 58999999999999999864 56788876554
No 450
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=91.76 E-value=0.3 Score=39.45 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=29.9
Q ss_pred cEEEECchHHHHHHHHHHHHCCC-cEEEEcCCCC
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAGL-SVCSIDPSPK 43 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G~-~V~liE~~~~ 43 (426)
.|+|||+|-.|..+|..|++.|. +++++|.+..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v 34 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTV 34 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCc
Confidence 48999999999999999999998 6999998753
No 451
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=91.70 E-value=0.22 Score=47.53 Aligned_cols=35 Identities=23% Similarity=0.262 Sum_probs=31.8
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPK 43 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 43 (426)
.-.|+|+|.|+.|..+|..|...|.+|+++|.++.
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~ 229 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI 229 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence 45799999999999999999999999999998763
No 452
>PRK06223 malate dehydrogenase; Reviewed
Probab=91.63 E-value=0.26 Score=45.61 Aligned_cols=34 Identities=21% Similarity=0.362 Sum_probs=30.3
Q ss_pred CcEEEECchHHHHHHHHHHHHCCC-cEEEEcCCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGL-SVCSIDPSPK 43 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~-~V~liE~~~~ 43 (426)
..|.|||+|-.|..+|..++..|+ +|.|+|..+.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 489999999999999999999876 9999998653
No 453
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=91.62 E-value=6.9 Score=41.18 Aligned_cols=37 Identities=11% Similarity=0.143 Sum_probs=30.9
Q ss_pred EE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCCC
Q 014377 112 FH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGFS 149 (426)
Q Consensus 112 ~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~~ 149 (426)
++ ++.|+.|...++++.| +.+|++++||.||.+.-..
T Consensus 449 I~ln~~V~~I~~~~dgV~V-~~~G~~~~AD~VIvTvPl~ 486 (808)
T PLN02328 449 IFYERTVESIRYGVDGVIV-YAGGQEFHGDMVLCTVPLG 486 (808)
T ss_pred cccCCeeEEEEEcCCeEEE-EeCCeEEEcCEEEECCCHH
Confidence 55 9999999998888877 5578889999999997654
No 454
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=91.62 E-value=0.2 Score=42.92 Aligned_cols=37 Identities=30% Similarity=0.537 Sum_probs=33.6
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCC
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPK 43 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 43 (426)
.....|.|||+|.-|.-.|...+..|++|.|+|+...
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 4457899999999999999999999999999999865
No 455
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=91.61 E-value=0.11 Score=40.89 Aligned_cols=36 Identities=22% Similarity=0.479 Sum_probs=28.8
Q ss_pred CCCcCcEEEECchHHHHHHHHHHHHCCCcEEEEcCC
Q 014377 6 KGLVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPS 41 (426)
Q Consensus 6 ~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~ 41 (426)
.....+|.|||+|-+|..+|..|.+.|+.|.-+...
T Consensus 7 ~~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~sr 42 (127)
T PF10727_consen 7 QAARLKIGIIGAGRVGTALARALARAGHEVVGVYSR 42 (127)
T ss_dssp -----EEEEECTSCCCCHHHHHHHHTTSEEEEESSC
T ss_pred CCCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 456789999999999999999999999999888654
No 456
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=91.60 E-value=0.31 Score=40.57 Aligned_cols=34 Identities=18% Similarity=0.177 Sum_probs=30.1
Q ss_pred CcCcEEEECchH-HHHHHHHHHHHCCCcEEEEcCC
Q 014377 8 LVVDLAVVGGGP-AGLAVAQQVSEAGLSVCSIDPS 41 (426)
Q Consensus 8 ~~~dViIvGgG~-aGl~~A~~La~~G~~V~liE~~ 41 (426)
....|+|||+|- +|..+|..|.+.|.+|.++.|.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 456899999996 6999999999999999999875
No 457
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=91.54 E-value=0.21 Score=50.60 Aligned_cols=35 Identities=23% Similarity=0.374 Sum_probs=32.2
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPK 43 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 43 (426)
+-+++|+|+|..|..+|..|.++|++|+++|+++.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~ 451 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT 451 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence 35799999999999999999999999999999863
No 458
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=91.54 E-value=0.23 Score=49.21 Aligned_cols=35 Identities=37% Similarity=0.521 Sum_probs=31.9
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPK 43 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 43 (426)
...|.|||+|.-|.-+|..|++.|++|+++|+.+.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 34699999999999999999999999999998764
No 459
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=91.46 E-value=0.27 Score=46.48 Aligned_cols=33 Identities=30% Similarity=0.485 Sum_probs=30.8
Q ss_pred CcEEEECchHHHHHHHHHHHHCC-CcEEEEcCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAG-LSVCSIDPSP 42 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G-~~V~liE~~~ 42 (426)
.+|+|||+|-.|..+|..|+++| .+|++.+|..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence 47999999999999999999999 8999999974
No 460
>PLN02576 protoporphyrinogen oxidase
Probab=91.44 E-value=16 Score=36.43 Aligned_cols=34 Identities=12% Similarity=0.138 Sum_probs=28.5
Q ss_pred CceeEeeccCCCCCCCCcHHHHHHHHhcHHHHHHHHHhcC
Q 014377 275 QRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVRSLS 314 (426)
Q Consensus 275 ~~v~liGdAa~~~~P~~G~G~~~a~~~a~~la~~i~~~l~ 314 (426)
+++.++||.. .|-|++.++++|..+|+.|...+.
T Consensus 455 ~~l~~aG~~~------~g~~i~~ai~sg~~aA~~i~~~~~ 488 (496)
T PLN02576 455 PGLFLGGNYR------GGVALGKCVESGYEAADLVISYLE 488 (496)
T ss_pred CCEEEecccc------CCccHHHHHHHHHHHHHHHHHHHh
Confidence 5899999884 466999999999999999886543
No 461
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=91.25 E-value=0.3 Score=44.62 Aligned_cols=33 Identities=30% Similarity=0.478 Sum_probs=30.0
Q ss_pred CcEEEECchHHHHHHHHHHHHCCC-cEEEEcCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGL-SVCSIDPSP 42 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~-~V~liE~~~ 42 (426)
..|+|+|+|-+|.++|..|++.|. +|+|++|..
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 479999999999999999999998 799998863
No 462
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.25 E-value=0.34 Score=44.82 Aligned_cols=35 Identities=29% Similarity=0.393 Sum_probs=30.8
Q ss_pred CcCcEEEECchHHHHHHHHHHHHCCC--cEEEEcCCC
Q 014377 8 LVVDLAVVGGGPAGLAVAQQVSEAGL--SVCSIDPSP 42 (426)
Q Consensus 8 ~~~dViIvGgG~aGl~~A~~La~~G~--~V~liE~~~ 42 (426)
+...|.|||+|-.|.++|+.|+..|+ +++|+|...
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 45689999999999999999998876 699999865
No 463
>PLN03000 amine oxidase
Probab=91.23 E-value=9.3 Score=40.49 Aligned_cols=48 Identities=10% Similarity=0.102 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhCCcEEE-EEEEEEEEEeCCeEEEEEcCCcEEEcCEEEECCCC
Q 014377 95 KLLKSKMLQKCITNGVKFH-QAKVIKVIHEESKSLLICNDGVTIQAAVVLDATGF 148 (426)
Q Consensus 95 ~~l~~~L~~~~~~~gv~~~-~~~v~~i~~~~~~~~v~~~~g~~i~a~~vV~AdG~ 148 (426)
..|.+.|.+.+ .++ ++.|++|+.+++++.|++.+ ++++||.||.|.-.
T Consensus 381 ~~LieaLa~~L-----~I~Ln~~Vt~I~~~~dgV~V~~~~-~~~~AD~VIvTVPl 429 (881)
T PLN03000 381 GRLVQALAENV-----PILYEKTVQTIRYGSNGVKVIAGN-QVYEGDMVLCTVPL 429 (881)
T ss_pred HHHHHHHHhhC-----CcccCCcEEEEEECCCeEEEEECC-cEEEeceEEEcCCH
Confidence 34444454433 356 99999999998888887654 58999999999754
No 464
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=91.09 E-value=0.39 Score=41.71 Aligned_cols=34 Identities=18% Similarity=0.355 Sum_probs=30.9
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCc-EEEEcCCC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLS-VCSIDPSP 42 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~-V~liE~~~ 42 (426)
...|+|||+|-.|+.+|..|++.|.. ++++|.+.
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 46899999999999999999999985 99999874
No 465
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=91.08 E-value=0.35 Score=42.88 Aligned_cols=35 Identities=26% Similarity=0.363 Sum_probs=31.0
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCC-cEEEEcCCCC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGL-SVCSIDPSPK 43 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~-~V~liE~~~~ 43 (426)
...|+|||+|-.|..+|..|++.|. +++++|.+..
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 4689999999999999999999997 7888888753
No 466
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=91.02 E-value=0.23 Score=51.66 Aligned_cols=34 Identities=32% Similarity=0.381 Sum_probs=31.5
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPK 43 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 43 (426)
..|.|||+|.-|.-+|..++..|++|+|+|..+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998764
No 467
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=91.01 E-value=0.3 Score=45.16 Aligned_cols=33 Identities=21% Similarity=0.470 Sum_probs=29.7
Q ss_pred cEEEECchHHHHHHHHHHHHCCC--cEEEEcCCCC
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAGL--SVCSIDPSPK 43 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G~--~V~liE~~~~ 43 (426)
.|+|||+|-+|.++|+.|+..|+ ++.|+|+.+.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 58999999999999999999994 7999999754
No 468
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=91.01 E-value=0.23 Score=51.52 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=32.0
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPK 43 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 43 (426)
.-.|.|||+|.-|.-.|..++..|++|+++|..+.
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH 347 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 34699999999999999999999999999998764
No 469
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=90.99 E-value=0.36 Score=42.98 Aligned_cols=34 Identities=29% Similarity=0.413 Sum_probs=30.9
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCC-cEEEEcCCC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGL-SVCSIDPSP 42 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~-~V~liE~~~ 42 (426)
...|+|||+|..|+.+|..|++.|. +++|+|.+.
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 4689999999999999999999998 789998874
No 470
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=90.76 E-value=0.29 Score=45.14 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=28.5
Q ss_pred EEEECchHHHHHHHHHHHHCCC-cEEEEcCCC
Q 014377 12 LAVVGGGPAGLAVAQQVSEAGL-SVCSIDPSP 42 (426)
Q Consensus 12 ViIvGgG~aGl~~A~~La~~G~-~V~liE~~~ 42 (426)
|.|||+|-.|..+|..|+..|+ +|+|+|..+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5799999999999999999887 999999875
No 471
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=90.64 E-value=0.37 Score=45.98 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=31.4
Q ss_pred CcCcEEEEC-chHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 8 LVVDLAVVG-GGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 8 ~~~dViIvG-gG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
....|.||| .|.-|.++|..|.++|++|.++++.+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence 446799999 79999999999999999999999853
No 472
>PLN02976 amine oxidase
Probab=90.61 E-value=34 Score=38.59 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=31.6
Q ss_pred EEE-EEEEEEEEEe----------CCeEEEEEcCCcEEEcCEEEECCCC
Q 014377 111 KFH-QAKVIKVIHE----------ESKSLLICNDGVTIQAAVVLDATGF 148 (426)
Q Consensus 111 ~~~-~~~v~~i~~~----------~~~~~v~~~~g~~i~a~~vV~AdG~ 148 (426)
.++ ++.|+.|... ++++.|++.+|+++.||.||.+--.
T Consensus 947 ~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTVPL 995 (1713)
T PLN02976 947 DIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITVPL 995 (1713)
T ss_pred CeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeCCH
Confidence 466 9999999874 3568899999999999999998754
No 473
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=90.59 E-value=0.3 Score=48.05 Aligned_cols=33 Identities=27% Similarity=0.500 Sum_probs=30.6
Q ss_pred cEEEECchHHHHHHHHHHHHCCCcEEEEcCCCC
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPK 43 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 43 (426)
+|+|+|+|..|..+|..|.+.|++|+++|+++.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 699999999999999999999999999998653
No 474
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=90.56 E-value=0.36 Score=42.25 Aligned_cols=32 Identities=25% Similarity=0.365 Sum_probs=29.0
Q ss_pred cEEEEC-chHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 11 DLAVVG-GGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 11 dViIvG-gG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
.|.||| +|..|.++|..|++.|.+|.++++++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 589997 69999999999999999999998764
No 475
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=90.55 E-value=0.35 Score=46.51 Aligned_cols=35 Identities=26% Similarity=0.288 Sum_probs=31.7
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPK 43 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 43 (426)
.-.|+|+|.|..|..+|..|...|.+|+++|+++.
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ 246 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI 246 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence 34699999999999999999999999999998763
No 476
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=90.51 E-value=0.33 Score=45.84 Aligned_cols=32 Identities=38% Similarity=0.570 Sum_probs=26.6
Q ss_pred cEEEECchHHHHHHHHHHHHCCC-cEEEEcCCC
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAGL-SVCSIDPSP 42 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G~-~V~liE~~~ 42 (426)
.|+|+|+||.|++++..+...|. +|+++|+.+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~ 203 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP 203 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH
Confidence 59999999999999887777885 666667765
No 477
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=90.49 E-value=0.29 Score=51.03 Aligned_cols=34 Identities=35% Similarity=0.527 Sum_probs=31.5
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPK 43 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 43 (426)
..|.|||+|.-|.-.|..++..|++|+++|..+.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~ 369 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA 369 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence 4699999999999999999999999999998764
No 478
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=90.48 E-value=3.2 Score=42.11 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=27.5
Q ss_pred cCcEEEECchHHHHHHHHHHHHCC-CcEEEEcCCC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAG-LSVCSIDPSP 42 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G-~~V~liE~~~ 42 (426)
.-.|+|||||..|.-.|..+.+.| -+|+|+.+.+
T Consensus 267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~ 301 (564)
T PRK12771 267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRT 301 (564)
T ss_pred CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 346999999999999998888887 5688877654
No 479
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=90.46 E-value=0.32 Score=44.68 Aligned_cols=32 Identities=19% Similarity=0.370 Sum_probs=29.7
Q ss_pred cEEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
.|.|||.|..|..+|..|++.|++|+++++.+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 38899999999999999999999999999875
No 480
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.45 E-value=0.41 Score=46.98 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=30.4
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
-.|+|+|+|..|.++|..|++.|.+|++.|+..
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 358999999999999999999999999999765
No 481
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=90.44 E-value=2.2 Score=39.34 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=30.9
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPK 43 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 43 (426)
-+|+|||||-+..--|+.|++.+-+|+++=|++.
T Consensus 144 k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~ 177 (305)
T COG0492 144 KDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDE 177 (305)
T ss_pred CeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcc
Confidence 3999999999999999999999999999977653
No 482
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=90.40 E-value=0.45 Score=42.10 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=30.7
Q ss_pred CCcCcEEEECchHHHHHHHHHHHHCC-----------CcEEEEcCCC
Q 014377 7 GLVVDLAVVGGGPAGLAVAQQVSEAG-----------LSVCSIDPSP 42 (426)
Q Consensus 7 ~~~~dViIvGgG~aGl~~A~~La~~G-----------~~V~liE~~~ 42 (426)
.....|+|||+|-.|+.++..|++.| .+++|+|.+.
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 35679999999999999999999874 3888998764
No 483
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=90.36 E-value=0.34 Score=44.50 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=31.6
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
...|+|+|.|.+|..+|..|.+.|.+|.++++.+
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4689999999999999999999999999999874
No 484
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=90.31 E-value=0.46 Score=41.85 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=30.9
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCC-cEEEEcCCC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGL-SVCSIDPSP 42 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~-~V~liE~~~ 42 (426)
...|+|||+|-.|+.+|..|++.|. +++|+|.+.
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 4689999999999999999999998 888888764
No 485
>PRK08328 hypothetical protein; Provisional
Probab=90.31 E-value=0.47 Score=41.87 Aligned_cols=34 Identities=35% Similarity=0.449 Sum_probs=30.4
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCC-cEEEEcCCC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGL-SVCSIDPSP 42 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~-~V~liE~~~ 42 (426)
...|+|||+|-.|+.+|..|++.|. +++|+|.+.
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 4679999999999999999999998 688998765
No 486
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=90.20 E-value=0.37 Score=47.44 Aligned_cols=34 Identities=32% Similarity=0.495 Sum_probs=31.3
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
.-.|+|+|+|++|+.++..+...|.+|.++|+++
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999999875
No 487
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=90.15 E-value=0.52 Score=41.41 Aligned_cols=34 Identities=29% Similarity=0.548 Sum_probs=30.5
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCc---EEEEcCCC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLS---VCSIDPSP 42 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~---V~liE~~~ 42 (426)
...|+|+|+|-+|..+|..|.+.|.+ +.+++|..
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 45799999999999999999999985 99999874
No 488
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.15 E-value=0.5 Score=46.36 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=31.2
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPK 43 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 43 (426)
..|+|+|.|.+|+++|..|++.|.+|++.|..+.
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 4699999999999999999999999999997654
No 489
>PLN02602 lactate dehydrogenase
Probab=90.04 E-value=0.57 Score=44.02 Aligned_cols=33 Identities=33% Similarity=0.597 Sum_probs=30.0
Q ss_pred CcEEEECchHHHHHHHHHHHHCCC--cEEEEcCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGL--SVCSIDPSP 42 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~--~V~liE~~~ 42 (426)
..|+|||+|-.|.++|+.|+..++ .+.|+|...
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~ 72 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNP 72 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 699999999999999999998887 699999865
No 490
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=89.98 E-value=0.4 Score=43.79 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=31.2
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
...|+|+|.|-.|..+|..|+..|.+|.+++|.+
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3579999999999999999999999999999864
No 491
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=89.84 E-value=0.38 Score=44.43 Aligned_cols=32 Identities=22% Similarity=0.417 Sum_probs=29.0
Q ss_pred cEEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
.|.|+|+|-.|+..|+.|++.|.+|+++=|.+
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 58999999999999999999998888887765
No 492
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.84 E-value=0.39 Score=47.65 Aligned_cols=33 Identities=27% Similarity=0.394 Sum_probs=30.1
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
-.|+|+|.|..|++++..|.+.|.+|++.|..+
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~ 45 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDP 45 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 469999999999999999999999999999653
No 493
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=89.84 E-value=0.39 Score=47.15 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=29.4
Q ss_pred cEEEECchHHHHHHHHHHHHC--CCcEEEEcCCCC
Q 014377 11 DLAVVGGGPAGLAVAQQVSEA--GLSVCSIDPSPK 43 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~--G~~V~liE~~~~ 43 (426)
.|.|||.|-.|+.+|..|++. |++|+.+|.++.
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 599999999999999999988 578999997653
No 494
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=89.82 E-value=0.43 Score=48.68 Aligned_cols=34 Identities=12% Similarity=0.237 Sum_probs=31.9
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
+-.|+|+|.|..|..+|..|.++|++|+++|+++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~ 433 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDI 433 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCH
Confidence 4579999999999999999999999999999886
No 495
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=89.68 E-value=0.57 Score=42.50 Aligned_cols=35 Identities=31% Similarity=0.423 Sum_probs=31.7
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPK 43 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 43 (426)
...|+|||.|..|.++|..|.+.|+.|.++.++..
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~ 37 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRS 37 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCc
Confidence 35799999999999999999999999999988753
No 496
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=89.68 E-value=0.38 Score=46.02 Aligned_cols=32 Identities=22% Similarity=0.433 Sum_probs=28.7
Q ss_pred cEEEECchHHHHHHHHHHHHCCCcEEEEcCCCC
Q 014377 11 DLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPK 43 (426)
Q Consensus 11 dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 43 (426)
.|.|||.|-.|+.+|..++. |++|+++|+++.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 58999999999999988885 999999998764
No 497
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=89.61 E-value=0.58 Score=41.17 Aligned_cols=34 Identities=29% Similarity=0.366 Sum_probs=31.1
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCC-cEEEEcCCC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGL-SVCSIDPSP 42 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~-~V~liE~~~ 42 (426)
...|+|||.|-.|..+|..|++.|. +++|+|.+.
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 4689999999999999999999998 899999875
No 498
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=89.53 E-value=0.56 Score=40.33 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=30.4
Q ss_pred CcEEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 10 VDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 10 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
..|+|+|.|-.|..+|..|.+.|.+|+++|+++
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 469999999999999999999999999998763
No 499
>PLN02494 adenosylhomocysteinase
Probab=89.46 E-value=0.5 Score=45.81 Aligned_cols=35 Identities=23% Similarity=0.248 Sum_probs=31.7
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCCC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSPK 43 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 43 (426)
.-.|+|+|.|..|..+|..+...|.+|+++|+++.
T Consensus 254 GKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~ 288 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPI 288 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 35799999999999999999999999999998763
No 500
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=89.45 E-value=0.3 Score=44.01 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=31.4
Q ss_pred cCcEEEECchHHHHHHHHHHHHCCCcEEEEcCCC
Q 014377 9 VVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPSP 42 (426)
Q Consensus 9 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 42 (426)
+-+|+|+|||.+|.-+|.-+.-.|-+|+++|.+.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~ 201 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI 201 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence 4689999999999999999999999999999874
Done!