Query 014378
Match_columns 426
No_of_seqs 250 out of 1635
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 10:30:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014378.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014378hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oyr_A Trans-isoprenyl diphosp 100.0 4.8E-72 1.6E-76 562.2 34.0 316 85-425 24-344 (345)
2 3mzv_A Decaprenyl diphosphate 100.0 2.7E-71 9.3E-76 556.5 34.1 317 85-426 11-333 (341)
3 3apz_A Geranyl diphosphate syn 100.0 5.8E-72 2E-76 563.7 28.6 342 85-426 7-348 (348)
4 3pko_A Geranylgeranyl pyrophos 100.0 6.3E-71 2.2E-75 552.6 29.8 318 85-426 14-334 (334)
5 3rmg_A Octaprenyl-diphosphate 100.0 6.6E-71 2.3E-75 552.5 28.5 315 86-426 7-326 (334)
6 3lmd_A Geranylgeranyl pyrophos 100.0 3.3E-70 1.1E-74 551.2 27.9 314 87-426 35-352 (360)
7 3nf2_A Putative polyprenyl syn 100.0 9E-70 3.1E-74 547.4 29.7 313 89-426 6-344 (352)
8 1wy0_A Geranylgeranyl pyrophos 100.0 6.9E-70 2.4E-74 547.4 27.3 317 85-426 4-342 (342)
9 3aqb_B Component B of hexapren 100.0 4.3E-69 1.5E-73 538.1 28.7 314 87-426 5-325 (325)
10 4dhd_A Polyprenyl synthetase; 100.0 9.4E-68 3.2E-72 534.0 30.9 309 90-426 8-336 (358)
11 1wmw_A Geranylgeranyl diphosph 100.0 1.8E-67 6.1E-72 527.4 26.1 306 93-426 6-330 (330)
12 1v4e_A Octoprenyl-diphosphate 100.0 2.6E-66 8.8E-71 512.0 24.3 281 92-403 9-289 (299)
13 3lk5_A Geranylgeranyl pyrophos 100.0 3.1E-65 1E-69 518.9 29.7 322 86-425 19-372 (380)
14 3tc1_A Octaprenyl pyrophosphat 100.0 3.7E-65 1.3E-69 506.7 27.0 298 96-422 6-307 (315)
15 2e8v_A Geranylgeranyl pyrophos 100.0 1.2E-65 4.1E-70 515.9 22.0 304 99-423 10-339 (340)
16 2q80_A Geranylgeranyl pyrophos 100.0 1.8E-65 6.3E-70 506.5 20.9 292 103-426 2-297 (301)
17 3uca_A Geranyltranstransferase 100.0 9.2E-64 3.1E-68 497.4 26.0 282 85-426 30-324 (324)
18 4f62_A Geranyltranstransferase 100.0 6.1E-63 2.1E-67 490.1 29.2 279 87-426 4-295 (317)
19 1yhl_A Farnesyl pyrophosphate 100.0 6.4E-63 2.2E-67 500.3 29.3 299 112-426 34-362 (362)
20 3ts7_A Geranyltranstransferase 100.0 4.7E-63 1.6E-67 492.3 26.8 279 87-426 8-302 (324)
21 2qis_A Farnesyl pyrophosphate 100.0 1.3E-62 4.3E-67 499.4 29.2 296 111-426 63-374 (374)
22 1rqj_A Geranyltranstransferase 100.0 3.3E-63 1.1E-67 490.1 22.7 280 89-426 4-299 (299)
23 1rtr_A Geranyltranstransferase 100.0 3.5E-63 1.2E-67 490.0 22.9 273 95-426 9-293 (301)
24 3lsn_A Geranyltranstransferase 100.0 1.2E-62 4E-67 486.3 26.4 278 88-426 3-296 (304)
25 2h8o_A Geranyltranstransferase 100.0 7.6E-63 2.6E-67 493.4 25.1 278 88-426 39-335 (335)
26 3p8r_A Geranyltranstransferase 100.0 1.7E-62 5.8E-67 485.0 25.5 276 90-426 11-302 (302)
27 3dyh_A Farnesyl pyrophosphate 100.0 9.6E-63 3.3E-67 502.4 24.4 330 85-426 22-390 (390)
28 3p8l_A Geranyltranstransferase 100.0 2.8E-62 9.6E-67 482.9 26.7 276 91-424 13-302 (302)
29 1uby_A FPS, farnesyl diphospha 100.0 3.9E-62 1.3E-66 494.7 28.3 295 112-426 57-367 (367)
30 2ihi_A Pyrophosphate synthase; 100.0 2.6E-62 9E-67 499.4 25.7 318 84-425 35-395 (395)
31 3m0g_A Farnesyl diphosphate sy 100.0 5.8E-62 2E-66 479.9 23.0 274 89-426 4-289 (297)
32 3mav_A Farnesyl pyrophosphate 100.0 5.3E-61 1.8E-65 491.2 29.6 291 113-424 67-394 (395)
33 3pde_A Farnesyl-diphosphate sy 100.0 1E-61 3.6E-66 479.7 23.5 279 89-426 9-300 (309)
34 3lom_A Geranyltranstransferase 100.0 1.3E-61 4.4E-66 480.4 24.0 275 90-425 11-302 (313)
35 2her_A Fragment, farnesyl pyro 100.0 1.2E-62 4.1E-67 496.7 16.1 310 84-424 27-354 (368)
36 3ipi_A Geranyltranstransferase 100.0 3.4E-61 1.1E-65 474.1 24.3 272 96-425 11-283 (295)
37 2ftz_A Geranyltranstransferase 100.0 7.3E-61 2.5E-65 469.3 25.3 264 97-424 16-284 (284)
38 3llw_A Geranyltranstransferase 100.0 1.9E-58 6.6E-63 457.3 24.9 273 99-425 18-304 (311)
39 3npk_A Geranyltranstransferase 100.0 1.7E-57 5.8E-62 446.7 22.8 266 97-423 7-284 (291)
40 2j1p_A Geranylgeranyl pyrophos 100.0 4.7E-57 1.6E-61 444.8 25.7 269 85-426 10-293 (293)
41 2q58_A Fragment, farnesyl pyro 100.0 5.7E-58 1.9E-62 464.5 18.9 288 113-425 59-359 (368)
42 2azj_A Geranylgeranyl pyrophos 100.0 2.1E-57 7.1E-62 446.1 22.2 265 90-425 13-280 (289)
43 4fp4_A Polyprenyl synthetase; 100.0 5.7E-53 2E-57 412.2 14.8 223 85-335 3-226 (285)
44 3kra_B Geranyl diphosphate syn 100.0 2.9E-48 9.8E-53 378.6 24.7 202 93-314 6-221 (274)
45 3qkc_B Geranyl diphosphate syn 100.0 8E-47 2.7E-51 368.3 25.8 196 97-315 15-223 (273)
46 4hd1_A Squalene synthase HPNC; 96.6 0.18 6.1E-06 48.7 19.8 132 240-402 106-237 (294)
47 3vj8_A Squalene synthase; farn 95.0 0.22 7.4E-06 49.4 12.5 146 231-402 111-256 (343)
48 3acx_A Dehydrosqualene synthas 94.7 0.41 1.4E-05 46.0 13.5 136 238-403 108-243 (293)
49 3aqb_A Component A of hexapren 82.6 2.4 8.4E-05 36.2 6.1 45 209-253 72-116 (147)
50 3kb9_A EPI-isozizaene synthase 79.8 49 0.0017 32.5 16.0 94 226-320 172-269 (382)
51 3v1v_A 2-MIB synthase, 2-methy 75.9 42 0.0014 33.9 14.0 96 222-320 246-346 (433)
52 3g4d_A (+)-delta-cadinene synt 63.9 1.3E+02 0.0043 31.5 14.8 91 228-320 363-459 (554)
53 3n0f_A Isoprene synthase; terp 56.2 91 0.0031 32.6 12.1 88 231-320 364-457 (555)
54 3m00_A Aristolochene synthase; 55.9 1.6E+02 0.0055 30.7 13.9 91 227-320 358-454 (550)
55 2q80_A Geranylgeranyl pyrophos 51.5 1.3E+02 0.0043 28.7 11.5 46 286-343 39-84 (301)
56 3rmg_A Octaprenyl-diphosphate 50.9 75 0.0026 30.8 9.9 49 284-344 59-107 (334)
57 3mzv_A Decaprenyl diphosphate 50.2 1.1E+02 0.0038 29.7 11.0 52 280-343 61-112 (341)
58 2ong_A 4S-limonene synthase; m 46.0 2E+02 0.0069 29.7 12.8 89 231-320 355-448 (543)
59 3uca_A Geranyltranstransferase 45.1 35 0.0012 33.2 6.4 61 168-228 234-306 (324)
60 4fp4_A Polyprenyl synthetase; 44.9 1E+02 0.0035 29.3 9.5 42 290-343 66-107 (285)
61 3nf2_A Putative polyprenyl syn 44.6 67 0.0023 31.4 8.4 52 280-343 62-113 (352)
62 3lsn_A Geranyltranstransferase 43.6 24 0.00084 33.9 5.0 79 168-246 206-298 (304)
63 3lmd_A Geranylgeranyl pyrophos 42.8 80 0.0027 31.0 8.7 50 282-343 84-134 (360)
64 1di1_A Aristolochene synthase; 39.6 2.3E+02 0.0078 26.0 16.6 65 257-321 150-214 (300)
65 4f62_A Geranyltranstransferase 39.3 49 0.0017 32.0 6.4 61 168-228 205-277 (317)
66 2ftz_A Geranyltranstransferase 39.2 2.1E+02 0.007 27.0 10.7 49 283-343 57-107 (284)
67 3m0g_A Farnesyl diphosphate sy 39.0 79 0.0027 30.1 7.8 60 169-228 200-271 (297)
68 1ps1_A Pentalenene synthase; a 36.0 2.8E+02 0.0095 26.0 17.4 99 222-320 125-227 (337)
69 3p8l_A Geranyltranstransferase 35.9 42 0.0014 32.2 5.2 60 168-227 209-280 (302)
70 1n1b_A (+)-bornyl diphosphate 34.8 1.8E+02 0.0062 30.2 10.3 88 232-320 362-455 (549)
71 1rtr_A Geranyltranstransferase 33.9 41 0.0014 32.1 4.9 61 168-228 201-273 (301)
72 3aqb_B Component B of hexapren 33.7 1.1E+02 0.0038 29.3 8.0 51 281-343 53-103 (325)
73 3lom_A Geranyltranstransferase 33.7 61 0.0021 31.2 6.0 61 168-228 213-285 (313)
74 2h8o_A Geranyltranstransferase 33.4 43 0.0015 32.6 5.0 61 168-228 245-317 (335)
75 3ts7_A Geranyltranstransferase 32.6 71 0.0024 30.9 6.4 61 169-229 213-285 (324)
76 3p8r_A Geranyltranstransferase 32.4 39 0.0013 32.4 4.4 61 169-229 213-285 (302)
77 1v4e_A Octoprenyl-diphosphate 32.4 1.6E+02 0.0053 28.0 8.7 40 292-343 61-100 (299)
78 3sdr_A Alpha-bisabolene syntha 31.5 1.3E+02 0.0046 32.8 8.9 87 232-320 626-721 (817)
79 4dhd_A Polyprenyl synthetase; 30.2 1.5E+02 0.0051 28.9 8.3 42 290-343 63-104 (358)
80 2e8v_A Geranylgeranyl pyrophos 29.7 2.6E+02 0.0088 26.9 9.9 47 285-343 53-99 (340)
81 3pko_A Geranylgeranyl pyrophos 28.8 1.9E+02 0.0064 27.9 8.7 48 284-343 67-115 (334)
82 3p5p_A Taxadiene synthase; cla 28.0 1.9E+02 0.0065 31.4 9.3 88 231-320 566-659 (764)
83 1wy0_A Geranylgeranyl pyrophos 26.7 1.8E+02 0.0061 28.0 8.1 49 283-343 57-105 (342)
84 3oyr_A Trans-isoprenyl diphosp 26.1 1.6E+02 0.0054 28.6 7.6 37 280-316 73-109 (345)
85 2azj_A Geranylgeranyl pyrophos 26.0 2.2E+02 0.0074 26.9 8.4 50 282-343 59-108 (289)
86 1yyq_A Trichodiene synthase; t 22.6 5.4E+02 0.019 25.1 17.4 151 176-348 91-252 (374)
87 3llw_A Geranyltranstransferase 22.5 2.3E+02 0.008 27.0 8.0 40 292-343 74-115 (311)
88 3pde_A Farnesyl-diphosphate sy 22.2 1.1E+02 0.0037 29.4 5.5 59 169-227 209-279 (309)
89 3ipi_A Geranyltranstransferase 22.2 1.2E+02 0.0041 28.8 5.8 61 169-229 191-265 (295)
No 1
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=100.00 E-value=4.8e-72 Score=562.23 Aligned_cols=316 Identities=31% Similarity=0.434 Sum_probs=266.7
Q ss_pred ccCchhhHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhH
Q 014378 85 QLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELR 164 (426)
Q Consensus 85 ~~~~~~~i~~eL~~v~~~l~~~~~~~~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~~~~~~~~ 164 (426)
+.+.+..+.++++.|+..|++.+.+.+|.+.++++|++..| |||+||.|++++++++|++.+
T Consensus 24 ~~~l~~~l~~~l~~v~~~l~~~l~~~~~~l~~~~~y~~~~g--GKrlRp~l~ll~~~~~g~~~~---------------- 85 (345)
T 3oyr_A 24 VDRLVRLAEADMAGVNRLITDRMQSDVAIIPALAEHLIAAG--GKRLRPLMTVAAARLAGADND---------------- 85 (345)
T ss_dssp SHHHHHHTHHHHHHHHHHHHHHTCCSSTHHHHHHHHHHTTT--CCCHHHHHHHHHHHHTTCCSS----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH----------------
Confidence 55667889999999999999999999999999999999988 999999999999999987543
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 014378 165 TRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLV 244 (426)
Q Consensus 165 ~~~~~lA~aiEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l~~~~v~~~ls~~~~~l~ 244 (426)
.+..+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++||..+++.+++++++.+++++..++
T Consensus 86 -~~~~~A~aiEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~~ 164 (345)
T 3oyr_A 86 -HFQKLAAAVEFIHTATLLHDDVVDGSQLRRGKVAAHLIWGGAQSVLVGDFLFARAFELMVETNSMKALEILARASRVIA 164 (345)
T ss_dssp -THHHHHHHHHHHHHHHHHTTTTC---------CCCSCCTTHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHCcccCCCCCCCCCccHHHhhCHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccCCcccc
Q 014378 245 TGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASL 324 (426)
Q Consensus 245 ~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lGiafQI~DDllD~~g~~~~~ 324 (426)
+||++|+.+..+...++++|++++.+|||+||++||++|++++|++++..+.+++||+++|+||||+||++||+++++.+
T Consensus 165 ~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~ 244 (345)
T 3oyr_A 165 EGEVLQLMRSHDLNLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGATETL 244 (345)
T ss_dssp HHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhc
Confidence 99999999988778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccchhccCcccHHHHHHhhhC-chHHHHHH----cccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccC
Q 014378 325 GKGSLSDIRHGIITAPILFAMEEF-PQLRTVVE----QGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSL 399 (426)
Q Consensus 325 GK~~g~Dl~~Gk~TlPvl~Al~~~-~~l~~~l~----~~~~~~~~v~~~~~li~~sg~i~~a~~~a~~~~~~A~~~L~~l 399 (426)
|||.|+||++||+|+|++++++.. +..++.+. +...+++++++++++|.++|++++|++++++|.++|++.|+.|
T Consensus 245 GK~~g~Dl~egK~TlP~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~v~~~i~~~gale~a~~~a~~~~~~A~~~L~~l 324 (345)
T 3oyr_A 245 GKNAGDDFREGKATLPLLLAIARSGPREAEFWERAIGRREQTEADFRRARELIIGSGALDATLDLAADYADKAKAALAMF 324 (345)
T ss_dssp ------------CCHHHHHHHHHSCSHHHHHHHHHCC----CCSSHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTS
T ss_pred CCCccchhhcCchHHHHHHHHHhCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999874 44444443 3334668899999999999999999999999999999999999
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHhcc
Q 014378 400 PENNDEDVTKSRRALLDLTHRVITRN 425 (426)
Q Consensus 400 p~~~~~~~~~~~~~L~~l~~~v~~R~ 425 (426)
|+++ +++.|.+|++++++|+
T Consensus 325 p~~~------~~~~L~~la~~~~~R~ 344 (345)
T 3oyr_A 325 PAND------WREALEELADFAVSRR 344 (345)
T ss_dssp CSSH------HHHHHHHHHHHHHHC-
T ss_pred CCcH------HHHHHHHHHHHHHhcc
Confidence 9988 9999999999999996
No 2
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=100.00 E-value=2.7e-71 Score=556.48 Aligned_cols=317 Identities=29% Similarity=0.495 Sum_probs=281.8
Q ss_pred ccCchhhHHHHHHHHHHHHHHHhhhC-chHHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHh
Q 014378 85 QLDPFSLVADELSILAKRLRSMVVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATEL 163 (426)
Q Consensus 85 ~~~~~~~i~~eL~~v~~~l~~~~~~~-~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~~~~~~~ 163 (426)
+.+.+..+.++++.|++.|++.+.+. +|.+.++++|++..| |||+||.|++++++++|++.+
T Consensus 11 ~~~l~~~l~~~l~~v~~~l~~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~l~l~~~~~~g~~~~--------------- 73 (341)
T 3mzv_A 11 HDRLAQALAEDMAAVNALIRERMSSEHAPRIPEVTAHLIEAG--GKRLRPMLTLAAARLVGYGGP--------------- 73 (341)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHSCCSSCTHHHHHHHHHHHSC--CCCHHHHHHHHHHHHTTCCCS---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH---------------
Confidence 55567889999999999999999988 899999999999988 999999999999999987542
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 014378 164 RTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHL 243 (426)
Q Consensus 164 ~~~~~~lA~aiEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l~~~~v~~~ls~~~~~l 243 (426)
.+..+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++||..+++.+++++++.+++++..+
T Consensus 74 --~~~~~A~aiEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~ 151 (341)
T 3mzv_A 74 --FHVHLAATVEFIHTATLLHDDVVDESRQRRGRPTANLLWDNKSSVLVGDYLFARSFQLMTDTGNMRVMEILANASAVI 151 (341)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHC------CTTSCCHHHHSCHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHcCccCCCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred HHHHHHhhcccCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccCCccc
Q 014378 244 VTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSAS 323 (426)
Q Consensus 244 ~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lGiafQI~DDllD~~g~~~~ 323 (426)
++||++|+.+..+...++++|++|+++|||+||++||++|++++|++++..+.++.||.++|+||||+||++|++++++.
T Consensus 152 ~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~ 231 (341)
T 3mzv_A 152 AEGEVLQLTAAQNLATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKSAE 231 (341)
T ss_dssp HHHHHHHHHHTTCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhh
Confidence 99999999998777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccchhccCcccHHHHHHhhhCc-h----HHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcc
Q 014378 324 LGKGSLSDIRHGIITAPILFAMEEFP-Q----LRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDS 398 (426)
Q Consensus 324 ~GK~~g~Dl~~Gk~TlPvl~Al~~~~-~----l~~~l~~~~~~~~~v~~~~~li~~sg~i~~a~~~a~~~~~~A~~~L~~ 398 (426)
+|||.|+||++||+|||+++|++..+ . +.+++.+...++++++++++++.++|++++|+.++++|.++|++.|+.
T Consensus 232 ~GK~~g~Dl~egK~Tlp~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~l~~~ga~~~a~~~a~~~~~~A~~~L~~ 311 (341)
T 3mzv_A 232 IGKNTGDDFRERKLTMPVIKAVALADEAERAFWKRVIEKGDQQDGDLEHAMALMTKHGTLEATRLAAIGWTDTARKALAK 311 (341)
T ss_dssp ----CCHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHTTSCCCCTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCcccccCchhHHHHHHHHhCCHhHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998864 2 344555444567899999999999999999999999999999999999
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014378 399 LPENNDEDVTKSRRALLDLTHRVITRNK 426 (426)
Q Consensus 399 lp~~~~~~~~~~~~~L~~l~~~v~~R~k 426 (426)
||+++ +++.|.+|++++++|+.
T Consensus 312 lp~~~------~~~~L~~la~~~~~r~~ 333 (341)
T 3mzv_A 312 LPDHP------LRQMLDDLADYVVERVR 333 (341)
T ss_dssp SCCCH------HHHHHHHHHHHHTGGGC
T ss_pred CCCCH------HHHHHHHHHHHHHhccc
Confidence 99988 99999999999999974
No 3
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=100.00 E-value=5.8e-72 Score=563.72 Aligned_cols=342 Identities=80% Similarity=1.158 Sum_probs=277.6
Q ss_pred ccCchhhHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhH
Q 014378 85 QLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELR 164 (426)
Q Consensus 85 ~~~~~~~i~~eL~~v~~~l~~~~~~~~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~~~~~~~~ 164 (426)
..+++..+.+||+.|++.|++.+.+.+|.+.++++|++..|.+|||+||.|++++++++|++.+.+.+.+..+..+.++.
T Consensus 7 ~~~~~~~i~~~l~~v~~~l~~~~~~~~~~l~~~~~y~~~~g~~GKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (348)
T 3apz_A 7 ELDPFSLVADELSLLSNKLREMVLAEVPKLASAAEYFFKRGVQGKQFRSTILLLMATALDVRVPEALIGESTDIVTSELR 86 (348)
T ss_dssp -CCTTTTTHHHHHHHHHGGGGCCCCCCC------------CCHHHHHHHHHHHHHHTTSCC--------------CHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHhCCCCCccHHHHHHHHHHHHcCCCCccccccccccccccchh
Confidence 67788899999999999999999999999999999999855459999999999999999864321100000001112344
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 014378 165 TRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLV 244 (426)
Q Consensus 165 ~~~~~lA~aiEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l~~~~v~~~ls~~~~~l~ 244 (426)
+.++.+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++|+..+++.+++++++.+++++..++
T Consensus 87 ~~~~~~A~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 166 (348)
T 3apz_A 87 VRQRGIAEITEMIHVASLLHDDVLDDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLV 166 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC----------------CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCcHHHHhCchHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred HHHHHhhcccCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccCCcccc
Q 014378 245 TGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASL 324 (426)
Q Consensus 245 ~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lGiafQI~DDllD~~g~~~~~ 324 (426)
+||++|+.+..+...++++|++++++|||+||+++|++|++++|.+++..+.+++||.++|+||||+||++||+++++.+
T Consensus 167 ~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~gd~~~~ 246 (348)
T 3apz_A 167 TGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASL 246 (348)
T ss_dssp HHHHHHHTCCHHHHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCT
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhc
Confidence 99999998876566899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccchhccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 014378 325 GKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENND 404 (426)
Q Consensus 325 GK~~g~Dl~~Gk~TlPvl~Al~~~~~l~~~l~~~~~~~~~v~~~~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~ 404 (426)
|||+|+||++||+|+|+++|++..|++++++.+.+.++++++.++++|.++|++++|++++++|.++|.+.|+.||+++.
T Consensus 247 GK~~g~Dl~egK~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~g~l~~a~~~~~~~~~~A~~~L~~l~~~~~ 326 (348)
T 3apz_A 247 GKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARELAMEHANLAAAAIGSLPETDN 326 (348)
T ss_dssp TCSCCHHHHTTCCCHHHHHHHHHCTTHHHHHHTTTTCTHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCCC
T ss_pred CCcchhhHhCCChhHHHHHHHHcCHHHHHHHHhccCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 99999999999999999999999899999998888888899999999999999999999999999999999999998752
Q ss_pred cchHHHHHHHHHHHHHHHhccC
Q 014378 405 EDVTKSRRALLDLTHRVITRNK 426 (426)
Q Consensus 405 ~~~~~~~~~L~~l~~~v~~R~k 426 (426)
......++.|..|++++++|++
T Consensus 327 ~~~~~~~~~L~~l~~~~~~R~~ 348 (348)
T 3apz_A 327 EDVKRSRRALIDLTHRVITRNK 348 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCC
T ss_pred cccHHHHHHHHHHHHHHHhCcC
Confidence 2222268999999999999975
No 4
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=100.00 E-value=6.3e-71 Score=552.63 Aligned_cols=318 Identities=26% Similarity=0.430 Sum_probs=298.3
Q ss_pred ccCchhhHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhH
Q 014378 85 QLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELR 164 (426)
Q Consensus 85 ~~~~~~~i~~eL~~v~~~l~~~~~~~~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~~~~~~~~ 164 (426)
.|++|+.+.+||+.|++.|++.+.+.+|.+.++++|++..| |||+||.|++++++ +|+..+ .
T Consensus 14 ~~~~~~~i~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~g--GKrlRp~l~l~~~~-~g~~~~---------------~ 75 (334)
T 3pko_A 14 LWRQFPQVEPQLTALQDYLLRTVQLDNQPIHHKILALLKSG--GKLLRPGYFYLFST-FGNAAT---------------P 75 (334)
T ss_dssp GGGGCTTTHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHC--CCCHHHHHHHHHHT-TCSCCC---------------H
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHhCC--CCcHHHHHHHHHHH-HcCCCC---------------H
Confidence 88999999999999999999999999999999999999989 99999999999999 664111 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHH
Q 014378 165 TRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-TEVVTLLATVVEHL 243 (426)
Q Consensus 165 ~~~~~lA~aiEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l~~-~~v~~~ls~~~~~l 243 (426)
+.+..+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++||..+++..+ +++++.+++++..+
T Consensus 76 ~~~~~~A~aiEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 155 (334)
T 3pko_A 76 AQLQAGAAAIEILHVGTLIHDDVIDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTTDRSLIQNHIDAMHRI 155 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCccCCCCCCcCCCccHHHHcCchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999998765 89999999999999
Q ss_pred HHHHHHhhcccCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccCCccc
Q 014378 244 VTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSAS 323 (426)
Q Consensus 244 ~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lGiafQI~DDllD~~g~~~~ 323 (426)
+.||++|+.+..+...++++|++++.+|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.
T Consensus 156 ~~Gq~~dl~~~~~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~ 235 (334)
T 3pko_A 156 LQGELHQMDLNYREDITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKR 235 (334)
T ss_dssp HHHHHHHHHTTTCTTCCHHHHHHHHHHTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTS
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhh
Confidence 99999999988777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccchhccCcccHHHHHHhhhCc-hHHHHHH-cccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCC
Q 014378 324 LGKGSLSDIRHGIITAPILFAMEEFP-QLRTVVE-QGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPE 401 (426)
Q Consensus 324 ~GK~~g~Dl~~Gk~TlPvl~Al~~~~-~l~~~l~-~~~~~~~~v~~~~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~ 401 (426)
+|||+|+||++||+|+|+++|++..+ ++++++. +...++++++.+++++.++|++++|++++++|.++|++.|+.||+
T Consensus 236 ~GK~~g~Dl~egK~Tlp~i~al~~~~~~l~~~l~~~~~~~~~~~~~i~~li~~~ga~~~a~~~~~~~~~~A~~~L~~lp~ 315 (334)
T 3pko_A 236 TQKPVLEDLRSGVYSLPLLLSLSHAPRDFHKLLKKKQAMTLEDIKHVQALVAQYDGVGAAKQLAQDYTDRALTLIQQLPV 315 (334)
T ss_dssp CCHHHHHHHHTTCCCHHHHHHGGGSHHHHHHHHTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCS
T ss_pred cCCCCCCccccCchhHHHHHHHHhCcHHHHHHHhcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999865 6777773 444578899999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHHHHhccC
Q 014378 402 NNDEDVTKSRRALLDLTHRVITRNK 426 (426)
Q Consensus 402 ~~~~~~~~~~~~L~~l~~~v~~R~k 426 (426)
++ +++.|.+|++++++|++
T Consensus 316 ~~------~~~~L~~l~~~~~~R~~ 334 (334)
T 3pko_A 316 GS------AQQSLEQLTRLLLRRDH 334 (334)
T ss_dssp SH------HHHHHHHHHHHHTTCC-
T ss_pred cH------HHHHHHHHHHHHHhccC
Confidence 87 99999999999999975
No 5
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.6e-71 Score=552.47 Aligned_cols=315 Identities=28% Similarity=0.382 Sum_probs=272.7
Q ss_pred cCchhhHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHH
Q 014378 86 LDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 165 (426)
Q Consensus 86 ~~~~~~i~~eL~~v~~~l~~~~~~~~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~~~~~~~~~ 165 (426)
.+.+..+.+||+.|+..|++.+.+.+|.+.++.+|++..| |||+||.|++++++++|++. +
T Consensus 7 ~~~~~~i~~~l~~v~~~l~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~l~l~~~~~~g~~~-----------------~ 67 (334)
T 3rmg_A 7 SLIKTPIEAELEDFKALFDTPLSDSNALLDSVITHIRKRN--GKMMRPILVLLVARLYGAVT-----------------P 67 (334)
T ss_dssp HHHHGGGHHHHHHHHHHTC----CCCHHHHHHHHHTCC------CHHHHHHHHHHHHHSCCC-----------------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCh-----------------H
Confidence 3456789999999999999999999999999999999988 99999999999999998643 3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 014378 166 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVT 245 (426)
Q Consensus 166 ~~~~lA~aiEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l~~~~v~~~ls~~~~~l~~ 245 (426)
.+..+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++|+..++..+++++++.+++++..++.
T Consensus 68 ~~~~~A~aiEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 147 (334)
T 3rmg_A 68 ATLHAAVSLELLHTASLVHDDVVDESTERRGQLSVNAIFNNKVSVLAGDYLLATSLVHAEQTNNYEIIRLVSSLGQKLAE 147 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCccCCCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred HHHHhhcccCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccCCccccC
Q 014378 246 GETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLG 325 (426)
Q Consensus 246 Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lGiafQI~DDllD~~g~~~~~G 325 (426)
||++|+.+..+...++++|++++++|||+||+++|++|++++|++++..+.++.||.++|+||||+||++|++ +++.+|
T Consensus 148 GQ~ldl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~-~~~~~G 226 (334)
T 3rmg_A 148 GELLQLSNVSNHSFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGICFQIKDDIFDYF-DSKKIG 226 (334)
T ss_dssp HHHHHHHCCCC--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTS-CC----
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCC-ChhhcC
Confidence 9999999987777899999999999999999999999999999999999999999999999999999999999 578999
Q ss_pred CCccchhccCcccHHHHHHhhhC-c----hHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCC
Q 014378 326 KGSLSDIRHGIITAPILFAMEEF-P----QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLP 400 (426)
Q Consensus 326 K~~g~Dl~~Gk~TlPvl~Al~~~-~----~l~~~l~~~~~~~~~v~~~~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp 400 (426)
||.|+||++||+|||+++|++.. + .+.+++.+...++++++.+++++.++|++++|+.++++|.++|++.|+.||
T Consensus 227 K~~g~Dl~egK~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~v~~~i~~~g~~~~a~~~~~~~~~~A~~~L~~lp 306 (334)
T 3rmg_A 227 KPTGNDMLEGKLTLPALYALNTTKDAWAEQIAFKVKEGTATPDEIVRLIEFTKDNGGIEYACRTIEQYKKKAFDLLAALP 306 (334)
T ss_dssp --CCHHHHTTCCCHHHHHHHHHHCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCchhhhhcCchHHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999874 2 466677777778899999999999999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHHHHHHHhccC
Q 014378 401 ENNDEDVTKSRRALLDLTHRVITRNK 426 (426)
Q Consensus 401 ~~~~~~~~~~~~~L~~l~~~v~~R~k 426 (426)
+++ +++.|.+|++++++|.+
T Consensus 307 ~~~------~~~~L~~l~~~~~~R~~ 326 (334)
T 3rmg_A 307 DSN------ICLALRTYLDYVVAREK 326 (334)
T ss_dssp CCH------HHHHHHHHHHHHHHCC-
T ss_pred CcH------HHHHHHHHHHHHHhccc
Confidence 888 99999999999999974
No 6
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=100.00 E-value=3.3e-70 Score=551.18 Aligned_cols=314 Identities=29% Similarity=0.431 Sum_probs=275.0
Q ss_pred CchhhHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHH
Q 014378 87 DPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 166 (426)
Q Consensus 87 ~~~~~i~~eL~~v~~~l~~~~~~~~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~~~~~~~~~~ 166 (426)
+.+..+.++++.|+..|++.+.+.+|.+.++++|++..| |||+||.|++++++++|.+.. +.
T Consensus 35 ~~~~~l~~~l~~ve~~l~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~ll~~~~~~~~~~----------------~~ 96 (360)
T 3lmd_A 35 ELTARINDAMVQVEELLHTELSSGEDFLVDIVMHLTRAG--GKRFRPMFALLASEFGEKPLS----------------EN 96 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHCCCC--SCCHHHHHHHHHHTTSSSTTC----------------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHCC--CCcHHHHHHHHHHHHhCCCCh----------------HH
Confidence 456789999999999999999999999999999999988 999999999999998873221 36
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 014378 167 QQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTG 246 (426)
Q Consensus 167 ~~~lA~aiEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l~~~~v~~~ls~~~~~l~~G 246 (426)
++.+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++||..+++++ ++++..+++++..++.|
T Consensus 97 ~~~~A~avEliH~asLIHDDImD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~-~~~~~~~~~~~~~~~~G 175 (360)
T 3lmd_A 97 VIKAAVVVEITHLATLYHDDVMDEASMRRGVPSANARWDNSVAILAGDILLAHASGLMSQLG-TDTVAHFAETFGELVTG 175 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcCCCCCCCCCCcHHhhcChHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999876 59999999999999999
Q ss_pred HHHhhcccCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccCCccccCC
Q 014378 247 ETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGK 326 (426)
Q Consensus 247 q~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lGiafQI~DDllD~~g~~~~~GK 326 (426)
|++|+.+..+. .++++|++++++|||+||+++|++|++++|++++..+.+++||.+||+||||+||++|++++++.+||
T Consensus 176 Q~ldl~~~~~~-~t~~~y~~~i~~KTg~L~~~a~~lga~laga~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK 254 (360)
T 3lmd_A 176 QMRETVGPRDT-DPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSETHESGK 254 (360)
T ss_dssp HHHHHHCCTTS-CHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHhccCCC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhhCC
Confidence 99999998776 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhccCcccHHHHHHhhhCc----hHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCC
Q 014378 327 GSLSDIRHGIITAPILFAMEEFP----QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPEN 402 (426)
Q Consensus 327 ~~g~Dl~~Gk~TlPvl~Al~~~~----~l~~~l~~~~~~~~~v~~~~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~ 402 (426)
|.|+||++||+|||+++|++..+ .+.+++.+...+++++++++++|+++|++++|++++++|.++|++.|+.||++
T Consensus 255 ~~g~Dl~egK~Tlp~l~al~~~~~~~~~L~~~l~~~~~~~~~~~~~~~ll~~~gal~~a~~~a~~~~~~A~~~L~~lp~~ 334 (360)
T 3lmd_A 255 TPGTDLREGVFTLPVLYALREDTPVGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALDEVYRYMDIANAELDRLPDS 334 (360)
T ss_dssp -CCHHHHHTCCCHHHHHHHHCCSHHHHHHHHHCSSCCCSHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred CchhHHhcCCchHHHHHHHHcCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999998742 46666666666788999999999999999999999999999999999999998
Q ss_pred CCcchHHHHHHHHHHHHHHHhccC
Q 014378 403 NDEDVTKSRRALLDLTHRVITRNK 426 (426)
Q Consensus 403 ~~~~~~~~~~~L~~l~~~v~~R~k 426 (426)
+ +++.|..|++++++|+.
T Consensus 335 ~------~~~~L~~La~~~~~R~~ 352 (360)
T 3lmd_A 335 T------VKEALRNLATFTVKRVG 352 (360)
T ss_dssp H------HHHHHHHHHHHHHHTTS
T ss_pred H------HHHHHHHHHHHHHHhcc
Confidence 8 99999999999999963
No 7
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=100.00 E-value=9e-70 Score=547.37 Aligned_cols=313 Identities=25% Similarity=0.344 Sum_probs=288.2
Q ss_pred hhhHHHHHHHHHHHHHHHhhhCchHHHHHHHHHH-----------hcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchh
Q 014378 89 FSLVADELSILAKRLRSMVVAEVPKLASAAEYFF-----------KMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVED 157 (426)
Q Consensus 89 ~~~i~~eL~~v~~~l~~~~~~~~~~l~~~~~y~~-----------~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~ 157 (426)
...+..-...|+..|++.+.+.+|.+.+++.|.+ ..| |||+||+|++++++++|++.+
T Consensus 6 ~~~l~~~~~~v~~~l~~~v~~~~~~l~~~~~y~~~~~~~~~~~~~~~g--GKrlRp~l~ll~~~~~g~~~~--------- 74 (352)
T 3nf2_A 6 TALLERGRTLATPVLRAAVDRLAPPMDTVAAYHFGWIDAQGNPADGDG--GKAVRPALAVLSAEVTGAAPE--------- 74 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCTTHHHHHHHHTTSBCTTSCBCCCCC--CCCHHHHHHHHHHHTTTCCGG---------
T ss_pred HHHHHHHHHHHHHHHHHHHcccChHHHHHHHHHhcccccccccCcCCC--cccHHHHHHHHHHHHcCCCHH---------
Confidence 3566777788999999999999999999999998 567 999999999999999987532
Q ss_pred hHhHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcCCCH---HHHH
Q 014378 158 ALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNT---EVVT 234 (426)
Q Consensus 158 ~~~~~~~~~~~~lA~aiEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l~~~---~v~~ 234 (426)
.++.+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++|+..+++.+++ ++++
T Consensus 75 --------~~~~~A~avEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~ 146 (352)
T 3nf2_A 75 --------VGVPGAVAVELVHNFSLLHDDLMDGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELGTVEAGRATR 146 (352)
T ss_dssp --------GGHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999887 7899
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhc
Q 014378 235 LLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDV 314 (426)
Q Consensus 235 ~ls~~~~~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lGiafQI~DDl 314 (426)
++++++..+++||++|+.+..+...++++|++|+++|||+||++||++|++++|++++..+.++.||++||+||||+||+
T Consensus 147 ~~~~~~~~l~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ 226 (352)
T 3nf2_A 147 RLTKASRSLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDL 226 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998777889999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccccCCCccchhccCcccHHHHHHhhhC-c---hHHHHHHcc-------cCChhHHHHHHHHHHhcchHHHHHH
Q 014378 315 LDFTGTSASLGKGSLSDIRHGIITAPILFAMEEF-P---QLRTVVEQG-------FEDSSNVDIALEYLGKSRGIQKTRE 383 (426)
Q Consensus 315 lD~~g~~~~~GK~~g~Dl~~Gk~TlPvl~Al~~~-~---~l~~~l~~~-------~~~~~~v~~~~~li~~sg~i~~a~~ 383 (426)
+||+++++.+|||.|+||++||+|+|+++|++.. | ++.+++.+. ..+++++++++++|.++|++++|++
T Consensus 227 ld~~gd~~~~GK~~g~Dl~egK~Tlpvi~al~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~li~~~g~~~~a~~ 306 (352)
T 3nf2_A 227 LGIWGDPDATGKQTWSDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTAD 306 (352)
T ss_dssp HHHHCCHHHHSSCTTHHHHTTCCCHHHHHHHHHCSHHHHHHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HhccCChhhhCCCcCcccccCCccHHHHHHHHhCChHHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHCCcHHHHHH
Confidence 9999999999999999999999999999999874 3 455666553 2467889999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCC-CCCcchHHHHHHHHHHHHHHHhccC
Q 014378 384 LAVKHANLAAAAIDSLPE-NNDEDVTKSRRALLDLTHRVITRNK 426 (426)
Q Consensus 384 ~a~~~~~~A~~~L~~lp~-~~~~~~~~~~~~L~~l~~~v~~R~k 426 (426)
++++|.++|++.|+.||+ ++ +|+.|..|++++++|+.
T Consensus 307 ~a~~~~~~A~~~L~~lp~~~~------~r~~L~~la~~~~~R~~ 344 (352)
T 3nf2_A 307 EARRQHTIAIEALDAVDMPDR------VRDRFTALADFVVVRKR 344 (352)
T ss_dssp HHHHHHHHHHHHHTTSCCCHH------HHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHhCCCCcH------HHHHHHHHHHHHHhccc
Confidence 999999999999999998 45 89999999999999963
No 8
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=6.9e-70 Score=547.39 Aligned_cols=317 Identities=28% Similarity=0.383 Sum_probs=292.2
Q ss_pred ccCchhhHHHHHHHHHHHHHHHhhhC-chHHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHh
Q 014378 85 QLDPFSLVADELSILAKRLRSMVVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATEL 163 (426)
Q Consensus 85 ~~~~~~~i~~eL~~v~~~l~~~~~~~-~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~~~~~~~ 163 (426)
+.+.+..+.++++.|++.|++.+... ++.+.++++|++..| |||+||.|++++++++|++.+
T Consensus 4 ~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~l~~~~~~~~~~g--GKrlRp~l~l~~~~~~g~~~~--------------- 66 (342)
T 1wy0_A 4 YEELFARIKEKAKLIDEKIFELIPEKDPRVLYEAARHYPLAG--GKRVRPFVVLTSTEAVGGDPL--------------- 66 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCSCSSHHHHHHHHHTGGGT--CCCHHHHHHHHHTTTTTSCGG---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhCC--CccHHHHHHHHHHHHcCCCHH---------------
Confidence 34456788899999999999999877 889999999999988 999999999999999976421
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcC-----CCHHHHHHHHH
Q 014378 164 RTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL-----KNTEVVTLLAT 238 (426)
Q Consensus 164 ~~~~~~lA~aiEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l-----~~~~v~~~ls~ 238 (426)
.+..+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++||..+++. .+.++++.+++
T Consensus 67 --~~~~~A~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~ 144 (342)
T 1wy0_A 67 --RAIYPAVAIELIHNYSLVHDDIMDMDETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAVARAEIPPEKKARVLEVIVK 144 (342)
T ss_dssp --GGHHHHHHHHHHHHHHHHHHHHHHTCCCSTTSCCHHHHHCHHHHHHHHHHHHHHHHHHHHTCCSCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHCCcccCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHHcccCcccHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999987 45689999999
Q ss_pred HHHHHHHHHHHhhcccCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhccccc
Q 014378 239 VVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFT 318 (426)
Q Consensus 239 ~~~~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lGiafQI~DDllD~~ 318 (426)
++..++.||++|+.+..+..+++++|++|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++
T Consensus 145 ~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~ 224 (342)
T 1wy0_A 145 ASNELCEGQARDLEFEKKSTVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLI 224 (342)
T ss_dssp HHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999988777899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCccchhccCcccHHHHHHhhhCc-hHHHHHHcccCC---------------hhHHHHHHHHHHhcchHHHHH
Q 014378 319 GTSASLGKGSLSDIRHGIITAPILFAMEEFP-QLRTVVEQGFED---------------SSNVDIALEYLGKSRGIQKTR 382 (426)
Q Consensus 319 g~~~~~GK~~g~Dl~~Gk~TlPvl~Al~~~~-~l~~~l~~~~~~---------------~~~v~~~~~li~~sg~i~~a~ 382 (426)
++++.+|||.|+||++||+|||++++++..+ ..++.+.+.+.. +++++.+++++.++|++++++
T Consensus 225 ~d~~~~GK~~g~Dl~egK~Tlp~i~al~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~g~~~~~~ 304 (342)
T 1wy0_A 225 ADEKKLGKPVGSDIRKGKKTLIVAHFFENADEKDKQRFLKIFGKYAGDVKGRGIIEEDIKSDVMEAIDLLKKYGSIDYAA 304 (342)
T ss_dssp SCHHHHTSCSCHHHHHTCCCHHHHHHHHHCCHHHHHHHHHTSCC-------------CHHHHHHHHHHHHHHTTHHHHHH
T ss_pred CChhhhCCCchhHHhCCCCcHHHHHHHHhCCHhHHHHHHHHHcccccccccccccccCCHHHHHHHHHHHHHCCcHHHHH
Confidence 9999999999999999999999999998753 455556555432 568899999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014378 383 ELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 426 (426)
Q Consensus 383 ~~a~~~~~~A~~~L~~lp~~~~~~~~~~~~~L~~l~~~v~~R~k 426 (426)
+++++|.++|.+.|+.||+++ .++.|..|++++++|++
T Consensus 305 ~~~~~~~~~A~~~L~~l~~~~------~~~~L~~l~~~~~~R~~ 342 (342)
T 1wy0_A 305 EIAKDMIKKANEALRILPKSK------ARMDLELLAKFIVEREY 342 (342)
T ss_dssp HHHHHHHHHHHTTGGGSCCCH------HHHHHHHHHHHTTTCC-
T ss_pred HHHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHhccC
Confidence 999999999999999999877 89999999999999974
No 9
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=100.00 E-value=4.3e-69 Score=538.06 Aligned_cols=314 Identities=27% Similarity=0.412 Sum_probs=290.7
Q ss_pred CchhhHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHH
Q 014378 87 DPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 166 (426)
Q Consensus 87 ~~~~~i~~eL~~v~~~l~~~~~~~~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~~~~~~~~~~ 166 (426)
..+..+.++++.|++.|++.+...+|.+.++++|++..| |||+||.|++++++++|++. +.
T Consensus 5 ~~~~~~~~~~~~v~~~l~~~~~~~~~~l~~~~~~~~~~g--GKr~Rp~l~l~~~~~~g~~~-----------------~~ 65 (325)
T 3aqb_B 5 SYKAFLNPYIIEVEKRLYECIQSDSETINKAAHHILSSG--GKRVRPMFVLLSGFLNDTQK-----------------DD 65 (325)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHSC--CCCHHHHHHHHHHTTSSCCC-----------------HH
T ss_pred chHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCh-----------------HH
Confidence 456678899999999999999888899999999999988 99999999999999997642 26
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 014378 167 QQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTG 246 (426)
Q Consensus 167 ~~~lA~aiEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l~~~~v~~~ls~~~~~l~~G 246 (426)
+..+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++|+..+++..++++++.+++++..+++|
T Consensus 66 ~~~~A~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~G 145 (325)
T 3aqb_B 66 LIRTAVSLELVHMASLVHDDYIDNSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQNIATINNSKFHQIFSKTILEVCFG 145 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECHHHHTCHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccccCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred HHHhhcccCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccCCccccCC
Q 014378 247 ETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGK 326 (426)
Q Consensus 247 q~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lGiafQI~DDllD~~g~~~~~GK 326 (426)
|.+|+.+..+...++++|++++++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+||
T Consensus 146 Q~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK 225 (325)
T 3aqb_B 146 EFDQMADRFNYPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLGK 225 (325)
T ss_dssp HHHHHHTTTCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS
T ss_pred HHHHHHcccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCC
Confidence 99999998777789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhccCcccHHHHHHhhhCch-HHHHHH---cccC---ChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccC
Q 014378 327 GSLSDIRHGIITAPILFAMEEFPQ-LRTVVE---QGFE---DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSL 399 (426)
Q Consensus 327 ~~g~Dl~~Gk~TlPvl~Al~~~~~-l~~~l~---~~~~---~~~~v~~~~~li~~sg~i~~a~~~a~~~~~~A~~~L~~l 399 (426)
|.|+||++||+|||++++++..+. .++.+. +.+. ++++++++++++.++ ++++++.++++|.++|.+.|+.+
T Consensus 226 ~~g~Dl~~gk~T~p~i~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~A~~~L~~l 304 (325)
T 3aqb_B 226 PVGSDIRNGHITYPLMAAIANLKEQDDDKLEAVVKHLTSTSDDEVYQYIVSQVKQY-GIEPAELLSRKYGDKAKYHLSQL 304 (325)
T ss_dssp CTTHHHHTTCCCHHHHHHHHHHHHTTCCHHHHHHHTCCTTCCHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHTS
T ss_pred ccchHhhCCCccHHHHHHHHhCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999987532 222332 2222 267899999999999 99999999999999999999999
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHhccC
Q 014378 400 PENNDEDVTKSRRALLDLTHRVITRNK 426 (426)
Q Consensus 400 p~~~~~~~~~~~~~L~~l~~~v~~R~k 426 (426)
|+++ .++.|..|++++++|++
T Consensus 305 p~~~------~~~~L~~l~~~~~~R~~ 325 (325)
T 3aqb_B 305 QDSN------IKDYLEEIHEKMLKRVY 325 (325)
T ss_dssp CCCH------HHHHHHHHHHHHTTTTC
T ss_pred CCcH------HHHHHHHHHHHHHhCcC
Confidence 9987 89999999999999975
No 10
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=100.00 E-value=9.4e-68 Score=533.99 Aligned_cols=309 Identities=25% Similarity=0.354 Sum_probs=278.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhC-chHHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHH
Q 014378 90 SLVADELSILAKRLRSMVVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQ 168 (426)
Q Consensus 90 ~~i~~eL~~v~~~l~~~~~~~-~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~ 168 (426)
.+++..++.|++.|++.+... ++.+.+++.|++..| |||+||.|++++++++|++.. .++
T Consensus 8 ~~~~~~~~~v~~~l~~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~-----------------~~~ 68 (358)
T 4dhd_A 8 RLHQKYGAEVEKALVRYLSIGLAEDFREAVLYQVKTG--GKRLRPLLTLAAAEAVSGQWR-----------------PAL 68 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHGGGSSC--CCCHHHHHHHHHHHHHHSCCG-----------------GGH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------HHH
Confidence 455667889999999999887 789999999999988 999999999999999987532 567
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHH
Q 014378 169 CIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-TEVVTLLATVVEHLVTGE 247 (426)
Q Consensus 169 ~lA~aiEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l~~-~~v~~~ls~~~~~l~~Gq 247 (426)
.+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++|+..++.... .++++.+++++..+++||
T Consensus 69 ~~A~aiEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~GQ 148 (358)
T 4dhd_A 69 PAAAIVELIHNYSLIYDDIIDRGDVRRGLPTVRKAFGDNAAILVGIWYREAIEEAVLDTPKPTLFAKEVAEVIKAIDEGE 148 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCccccCCCCcCCCccHHHhcCHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999976654 689999999999999999
Q ss_pred HHhhccc-----------CCC-CCCHHHHHHHHHhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcc
Q 014378 248 TMQMTTS-----------SDQ-RCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVL 315 (426)
Q Consensus 248 ~~dl~~~-----------~~~-~~s~~~Yl~ii~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lGiafQI~DDll 315 (426)
.+|+.+. .+. ..++++|++++.+|||+||++||++|++++|++++..+.+++||.++|+||||+||++
T Consensus 149 ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~l 228 (358)
T 4dhd_A 149 RLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDDVL 228 (358)
T ss_dssp HHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987 444 6799999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccccCCCccchhccCcc-cHHHHHHhhhC-c----hHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHH
Q 014378 316 DFTGTSASLGKGSLSDIRHGII-TAPILFAMEEF-P----QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHA 389 (426)
Q Consensus 316 D~~g~~~~~GK~~g~Dl~~Gk~-TlPvl~Al~~~-~----~l~~~l~~~~~~~~~v~~~~~li~~sg~i~~a~~~a~~~~ 389 (426)
|++++++.+|||.|+||++||+ |+|+++|++.. + .+.+++.+...+++++++++++|.++|++++|++++++|.
T Consensus 229 D~~gd~~~~GK~~g~Dl~egK~~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~i~~li~~~gai~~a~~~a~~~~ 308 (358)
T 4dhd_A 229 DIYGDPKKFGKEIGKDIKEHKRGNAVVAVALSHLGEGERRRLLEILAREVVEEADVREAVALLDSVGAREEALRLAARYR 308 (358)
T ss_dssp HHHC-------CTTHHHHTTBSCSHHHHHHHHHSCHHHHHHHHHHHHCSSCCHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HhcCChhhcCCCchhhHhcCChhhHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHH
Confidence 9999999999999999999999 99999999974 3 3566777666678899999999999999999999999999
Q ss_pred HHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014378 390 NLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 426 (426)
Q Consensus 390 ~~A~~~L~~lp~~~~~~~~~~~~~L~~l~~~v~~R~k 426 (426)
++|++.|+.||+++ .|.+|++++++|++
T Consensus 309 ~~A~~~L~~lp~~~---------~L~~la~~~~~R~~ 336 (358)
T 4dhd_A 309 EEAERHLAKIPNNG---------TLKELLDFIVAREY 336 (358)
T ss_dssp HHHHHHHTTSSSCH---------HHHHHHHHHTTTTT
T ss_pred HHHHHHHHcCCCCH---------HHHHHHHHHHhccc
Confidence 99999999999543 79999999999974
No 11
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=100.00 E-value=1.8e-67 Score=527.38 Aligned_cols=306 Identities=25% Similarity=0.261 Sum_probs=277.3
Q ss_pred HHHHHHHHHHHHHHhhhCchHHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHH
Q 014378 93 ADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAE 172 (426)
Q Consensus 93 ~~eL~~v~~~l~~~~~~~~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~ 172 (426)
......|++.|.+.+...+|.+.++++|++..| |||+||.|++++++++|++. +.++.+|+
T Consensus 6 ~~~~~~v~~~l~~~~~~~~~~l~~~~~~~~~~g--GKrlRp~l~l~~~~~~~~~~-----------------~~~~~~A~ 66 (330)
T 1wmw_A 6 EAIRQALQERLLARLDHPDPLYRDLLQDYPRRG--GKMLRGLLTVYSALAHGAPL-----------------EAGLEAAT 66 (330)
T ss_dssp HHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHTTCCH-----------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHhCC--CccHHHHHHHHHHHHcCCCH-----------------HHHHHHHH
Confidence 455667888898888888899999999999988 99999999999999998632 26789999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcCCC-----HHHHHHHHHHHHHHHHHH
Q 014378 173 ITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-----TEVVTLLATVVEHLVTGE 247 (426)
Q Consensus 173 aiEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l~~-----~~v~~~ls~~~~~l~~Gq 247 (426)
++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++|++.+++..+ +++++.+++++..+++||
T Consensus 67 avEliH~asLihDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ 146 (330)
T 1wmw_A 67 ALELFQNWVLVHDDIEDGSEERRGRPALHRLHPMPLALNAGDAMHAEMWGLLAEGLARGLFPPEVLLEFHEVVRRTAYGQ 146 (330)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccccCCCCCCCCCccccccCchHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999987543 789999999999999999
Q ss_pred HHhhcc-cCC-CCCCHHHHHHHHHhhhhhH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccCCcccc
Q 014378 248 TMQMTT-SSD-QRCSMDYYMQKTYYKTASL-ISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASL 324 (426)
Q Consensus 248 ~~dl~~-~~~-~~~s~~~Yl~ii~~KTasL-~~~a~~~ga~lag~~~~~~~~l~~~G~~lGiafQI~DDllD~~g~~~~~ 324 (426)
++|+.+ ..+ ...++++|++|+++|||+| |++||++|++++|.+++.. +++||.++|+||||+||++|++++++ +
T Consensus 147 ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~~~~~~--l~~~g~~lG~aFQi~DD~ld~~~d~~-~ 223 (330)
T 1wmw_A 147 HLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGKTPPAA--YEEGGLRLGTAFQIVDDVLNLEGGEA-Y 223 (330)
T ss_dssp HHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCCHH--HHHHHHHHHHHHHHHHHHHHHSCSCC-C
T ss_pred HHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHccCcccCCcc-c
Confidence 999998 776 6789999999999999999 9999999999999987766 99999999999999999999999999 9
Q ss_pred CCCccchhccCcccHHHHHHhhhCc-hHHHHHHcccC----C--hhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc
Q 014378 325 GKGSLSDIRHGIITAPILFAMEEFP-QLRTVVEQGFE----D--SSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAID 397 (426)
Q Consensus 325 GK~~g~Dl~~Gk~TlPvl~Al~~~~-~l~~~l~~~~~----~--~~~v~~~~~li~~sg~i~~a~~~a~~~~~~A~~~L~ 397 (426)
|||.|+||++||+|||+++|++..+ ..++.+...+. + +++++++++++.++|+++++++++++|.++|.+.|+
T Consensus 224 GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~~~~A~~~L~ 303 (330)
T 1wmw_A 224 GKERAGDLYEGKRTLILLRFLEEAPPEERARALALLALPREAKPEAEVGWLLERLLASRALAWAKAEAKRLQAEGLALLE 303 (330)
T ss_dssp SSSTTHHHHHTCCCHHHHHHHHHSCHHHHHHHHHHHTSCGGGSCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCchhhCCCCCHHHHHHHHhCCHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998764 34444433332 2 678999999999999999999999999999999999
Q ss_pred ----cCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014378 398 ----SLPENNDEDVTKSRRALLDLTHRVITRNK 426 (426)
Q Consensus 398 ----~lp~~~~~~~~~~~~~L~~l~~~v~~R~k 426 (426)
.||+++ .++.|..|++++++|++
T Consensus 304 ~~i~~lp~~~------~~~~L~~l~~~~~~R~~ 330 (330)
T 1wmw_A 304 AAFQDLPGKE------ALDHLRGLLAALVERRA 330 (330)
T ss_dssp TGGGGCSCHH------HHHHHHHHHHHHHHC--
T ss_pred HHhhcCCCcH------HHHHHHHHHHHHHhccC
Confidence 999876 89999999999999975
No 12
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=100.00 E-value=2.6e-66 Score=511.97 Aligned_cols=281 Identities=24% Similarity=0.384 Sum_probs=261.8
Q ss_pred HHHHHHHHHHHHHHHhhhCchHHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHH
Q 014378 92 VADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 171 (426)
Q Consensus 92 i~~eL~~v~~~l~~~~~~~~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~lA 171 (426)
+.+|++.|++.|++.+....| ++++|++..| |||+||.|++++++++|++.+ +.+..+|
T Consensus 9 ~~~~l~~v~~~l~~~~~~~~~---~~~~y~~~~g--GKrlRp~l~l~~~~~~g~~~~----------------~~~~~~A 67 (299)
T 1v4e_A 9 NSYELEKVKERIEQILSQFFP---EQIMKDLPLY--GKMLRVRLSILSFKNRGVEIG----------------EDAISSL 67 (299)
T ss_dssp CHHHHHHHHHHHHHHHHHHSC---HHHHTTSCCC--CCCHHHHHHHHHHHHHTCCCC----------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCH---HHHHHHHhCC--CCcHHHHHHHHHHHHcCCCCh----------------hHHHHHH
Confidence 567899999999998877666 8999999988 999999999999999986221 2578899
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh
Q 014378 172 EITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQM 251 (426)
Q Consensus 172 ~aiEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l~~~~v~~~ls~~~~~l~~Gq~~dl 251 (426)
+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++||..+++..++++++.+++++..+++||++|+
T Consensus 68 ~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl 147 (299)
T 1v4e_A 68 AALELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMSEAELIEQ 147 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred cccCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccCCccccCCCccch
Q 014378 252 TTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSD 331 (426)
Q Consensus 252 ~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lGiafQI~DDllD~~g~~~~~GK~~g~D 331 (426)
.+..+. .++++|++++.+|||+||++||++|++++|+++ +.+++||.++|+||||+||++|++++ +.+|||.|+|
T Consensus 148 ~~~~~~-~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~---~~l~~~g~~lG~aFQi~DD~lD~~~d-~~~GK~~g~D 222 (299)
T 1v4e_A 148 LSRYKP-ITKEEYLRIVEGKSGALFGLALQLPALLEGELG---EDLYNLGVTIGTIYQMFDDIMDFAGM-EKIGKDGFLD 222 (299)
T ss_dssp HHTTSC-CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCC---HHHHHHHHHHHHHHHHHHHHHHHTTC-CSCCTTSSCC
T ss_pred HccCCC-CCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCH---HHHHHHHHHHHHHHHHHHHHHHccCc-cccCCCcchH
Confidence 988766 899999999999999999999999999999877 88999999999999999999999999 9999999999
Q ss_pred hccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 014378 332 IRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENN 403 (426)
Q Consensus 332 l~~Gk~TlPvl~Al~~~~~l~~~l~~~~~~~~~v~~~~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~ 403 (426)
|++||+|||++++++..+.+++++.+ ++++++++++.++|++++++.++++|.++|.+.|+.||+..
T Consensus 223 l~egK~T~p~l~al~~~~~l~~~l~~-----~~~~~~~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~l~~~~ 289 (299)
T 1v4e_A 223 LKNGVASFPLVTAMEKFPEARQMFEN-----RDWSGLMSFMREKGILKECEETLKVLVKNVIIENSWLRDFV 289 (299)
T ss_dssp CTTTTCCHHHHHHHHHCHHHHHHHHT-----TCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCGGGCCC-
T ss_pred hhCCCchHHHHHHHHhChHHHHHHhH-----HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999987667677754 57889999999999999999999999999999999999887
No 13
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=100.00 E-value=3.1e-65 Score=518.89 Aligned_cols=322 Identities=23% Similarity=0.290 Sum_probs=265.3
Q ss_pred cCchhhHHHHHHHHHHHHHHHhhhCchH---HHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchhhHhHH
Q 014378 86 LDPFSLVADELSILAKRLRSMVVAEVPK---LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATE 162 (426)
Q Consensus 86 ~~~~~~i~~eL~~v~~~l~~~~~~~~~~---l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~~~~~~ 162 (426)
.+....|+++|+.+-......+....|. +.+.+.|++..| |||+||+|++++++++|+..+. ..
T Consensus 19 ~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g--GKrlRp~l~l~~~~~~g~~~~~-----------~~ 85 (380)
T 3lk5_A 19 DKFPEVVRDRLTQFLDAQELTIADIGAPVTDAVAHLRSFVLNG--GKRIRPLYAWAGFLAAQGHKNS-----------SE 85 (380)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHSC--CCCHHHHHHHHHHHHHHTTSCC-----------SS
T ss_pred HHHHHHHHHHHHHHHHHhhHhhhccCccHHHHHHHHHHHHhCC--CcchhHHHHHHHHHHcCCCccc-----------cC
Confidence 4445677788877776666655555554 566667877788 9999999999999999874110 01
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCccccc----------------cChhHHHHHHHHHHHHHHHHHHc
Q 014378 163 LRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFV----------------MGNKLAVLAGDFLLSRACVALAS 226 (426)
Q Consensus 163 ~~~~~~~lA~aiEliH~AsLIHDDIiD~s~~RRG~pt~h~~----------------~G~~~AVlaGD~Lla~a~~~la~ 226 (426)
..+.++.+|+++||||+||||||||||+|++|||+||+|++ ||++.|||+||||+++|++++++
T Consensus 86 ~~~~~~~~AaaiEliH~asLIHDDImD~s~~RRG~pt~h~~f~~~~~~~~~~~~~~~~G~~~AIL~GD~Ll~~A~~~l~~ 165 (380)
T 3lk5_A 86 KLESVLDAAASLEFIQACALIHDDIIDSSDTRRGAPTVHRAVEADHRANNFEGDPEHFGVSVSILAGDMALVWAEDMLQD 165 (380)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTC-----------------------------CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCcCCCCCCCCCcchhHHHHHhhhhcccccchhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 12478899999999999999999999999999999999997 69999999999999999999998
Q ss_pred CCC-----HHHHHHHHHHHHHHHHHHHHhhcccCCCCCCHHHHHHHHHhhhhhH-HHHHHHHHHHHcCCCHHHHHHHHHH
Q 014378 227 LKN-----TEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASL-ISNSCKAIALLAGQTAEVAILAFDY 300 (426)
Q Consensus 227 l~~-----~~v~~~ls~~~~~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL-~~~a~~~ga~lag~~~~~~~~l~~~ 300 (426)
.+. ..++..++.+...++.||++|+.+..+...++++|++|+.+|||+| |++||++|++++|++++..+.++.|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~laga~~~~~~~l~~~ 245 (380)
T 3lk5_A 166 SGLSAEALARTRDAWRGMRTEVIGGQLLDIYLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHY 245 (380)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 653 3577888888899999999999998777789999999999999999 8999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcccccCCccccCCCccchhccCcccHHHHHHhhhC----chHHHHHHccc---CChhHHHHHHHHHH
Q 014378 301 GKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEF----PQLRTVVEQGF---EDSSNVDIALEYLG 373 (426)
Q Consensus 301 G~~lGiafQI~DDllD~~g~~~~~GK~~g~Dl~~Gk~TlPvl~Al~~~----~~l~~~l~~~~---~~~~~v~~~~~li~ 373 (426)
|++||+||||+||++|++|+++.+|||+|+||++||+|+|+++|++.. |..++.+.+.+ .+++++++++++|.
T Consensus 246 G~~lG~AFQI~DDiLd~~gd~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~~~~L~~~l~~~~~~~~~~~v~~li~ 325 (380)
T 3lk5_A 246 GHDIGIAFQLRDDLLGVFGDPAITGKPAGDDIREGKRTVLLALALQRADKQSPEAATAIRAGVGKVTSPEDIAVITEHIR 325 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHHHHHCHHHHHHHHHHTTTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchHHHHHHHHhCccCChHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999863 44444443332 35788999999999
Q ss_pred hcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhcc
Q 014378 374 KSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRN 425 (426)
Q Consensus 374 ~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~~~~L~~l~~~v~~R~ 425 (426)
++|+++++++++++|.++|++.|+.+|.++. +|+.|.+|++++..|+
T Consensus 326 ~~Ga~~~~~~~~~~~~~~A~~~L~~lp~~~~-----~r~~L~~La~~~~~~~ 372 (380)
T 3lk5_A 326 ATGAEEEVEQRISQLTESGLAHLDDVDIPDE-----VRAQLRALAIRSTERR 372 (380)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHGGGSCCCHH-----HHHHHHHHHHHHHC--
T ss_pred HcChHHHHHHHHHHHHHHHHHHHHhCCCChH-----HHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999996431 8999999999999885
No 14
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=100.00 E-value=3.7e-65 Score=506.70 Aligned_cols=298 Identities=27% Similarity=0.350 Sum_probs=247.3
Q ss_pred HHHHHHHHHHHhhh-CchHHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHHH
Q 014378 96 LSILAKRLRSMVVA-EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEIT 174 (426)
Q Consensus 96 L~~v~~~l~~~~~~-~~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~ai 174 (426)
+..|++.|.+.+.. ..|.+.+ .|.+..| |||+||.|++++++. +.. ....+++..+|+++
T Consensus 6 ~~~i~~~l~~~~~~~~~~~~~~--~y~~~~g--GKrlRp~l~l~~~~~-~~~--------------~~~~~~~~~~A~ai 66 (315)
T 3tc1_A 6 LKAIQNKIASWIKEIESGFIDE--LFSKIGP--SKMLRSKLMLALLNE-KTD--------------AILLDKALNLCTIV 66 (315)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHH--HHTTCCC--CCCHHHHHHHTTCCT-TCC--------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCcHHHHH--HHHhcCC--cccHHHHHHHHHhcc-Ccc--------------ccchhhHHHHHHHH
Confidence 56677777777763 3344433 5777777 999999999998772 110 01124678999999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccc
Q 014378 175 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTS 254 (426)
Q Consensus 175 EliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l~~~~v~~~ls~~~~~l~~Gq~~dl~~~ 254 (426)
||||+||||||||||+|++|||+||+|.+||++.|||+||||+++||..+++.+ +++++.+++++..++.||++|+.+.
T Consensus 67 EliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~-~~~~~~~~~~~~~~~~GQ~~dl~~~ 145 (315)
T 3tc1_A 67 EMIQTASLLHDDVIDKATMRRKLPSINALFGNFNAVMLGDVFYSKAFFELSKMG-ELIAQALSNAVLRLSRGEIEDVFVG 145 (315)
T ss_dssp HHHHHHHHHHHHTC----------------CCSHHHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCCCCcCCCccHHHHhCchHHHHHHHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999999887 8999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccCCccccCCCccchhcc
Q 014378 255 SDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH 334 (426)
Q Consensus 255 ~~~~~s~~~Yl~ii~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lGiafQI~DDllD~~g~~~~~GK~~g~Dl~~ 334 (426)
.+...++++|++++++|||+||++||++|++++|++ .+.++.||.++|+||||+||++|++++++.+|||.|+||++
T Consensus 146 ~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~---~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~e 222 (315)
T 3tc1_A 146 ECFNSDKQKYWRILEDKTAHFIEASLKSMAILLNKD---AKIYADFGLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFKE 222 (315)
T ss_dssp TSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCTGGG
T ss_pred CCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHHHHHhcccCCHHHhCCChhhHHHc
Confidence 777889999999999999999999999999999998 67899999999999999999999999999999999999999
Q ss_pred CcccHHHHHHhhhC-chHHHHHHcccC--ChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHH
Q 014378 335 GIITAPILFAMEEF-PQLRTVVEQGFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSR 411 (426)
Q Consensus 335 Gk~TlPvl~Al~~~-~~l~~~l~~~~~--~~~~v~~~~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~~ 411 (426)
||+|||+++|++.. |..++.+.+.+. ++++++.+++++.++|++++|+.++++|.++|++.|+.||+++ +|
T Consensus 223 gK~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~i~~li~~~ga~~~~~~~~~~~~~~A~~~L~~lp~s~------~r 296 (315)
T 3tc1_A 223 GKTTLPYLLLYEKLNQHDQGLLISYFKQDSHEIIEWTKEKFKQYGIIEETLKTAQVYSKKALEAIKGENNLI------LE 296 (315)
T ss_dssp TCCCHHHHHHHTTSCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTTCCHH------HH
T ss_pred CChhHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcH------HH
Confidence 99999999999984 555555544333 6789999999999999999999999999999999999999998 99
Q ss_pred HHHHHHHHHHH
Q 014378 412 RALLDLTHRVI 422 (426)
Q Consensus 412 ~~L~~l~~~v~ 422 (426)
+.|..|++++.
T Consensus 297 ~~L~~l~~~~~ 307 (315)
T 3tc1_A 297 KLAQDVISRTF 307 (315)
T ss_dssp HHHHHHHCC--
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 15
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=100.00 E-value=1.2e-65 Score=515.85 Aligned_cols=304 Identities=18% Similarity=0.280 Sum_probs=239.6
Q ss_pred HHHHHHHHh---hhCchHHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHHHH
Q 014378 99 LAKRLRSMV---VAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITE 175 (426)
Q Consensus 99 v~~~l~~~~---~~~~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiE 175 (426)
|+..+.+.. ...++.+.++++|++..| |||+||.|++++++++|.+. +.+..+|+++|
T Consensus 10 v~~~l~~~~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~l~l~~~~~~~~~~-----------------~~~~~~A~avE 70 (340)
T 2e8v_A 10 IDELINNDPVWSSQNESLISKPYNHILLKP--GKNFRLNLIVQINRVMNLPK-----------------DQLAIVSQIVE 70 (340)
T ss_dssp HHHHHTSCCCCCHHHHHHHHHHHHHHHTSC--CCCHHHHHHHHHHHHHCCCH-----------------HHHHHHHHHHH
T ss_pred HHHHHHhcccccccChHHHHHHHHHHHhCC--CccHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHH
Confidence 555555554 456678999999999988 99999999999999998631 25788999999
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcCCCHH-----HHHHHHHHHHHHHHHHHHh
Q 014378 176 MIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTE-----VVTLLATVVEHLVTGETMQ 250 (426)
Q Consensus 176 liH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l~~~~-----v~~~ls~~~~~l~~Gq~~d 250 (426)
|||+||||||||||+|++|||+||+|.+||++.|||+||||+++|+..+++..++. +++.+++++..+++||++|
T Consensus 71 liH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ld 150 (340)
T 2e8v_A 71 LLHNSSLLIDDIEDNAPLRRGQTTSHLIFGVPSTINTANYMYFRAMQLVSQLTTKEPLYHNLITIFNEELINLHRGQGLD 150 (340)
T ss_dssp HHHHHHHHHHHHHTTCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccccCCCCCCCCcchhhccCchHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988766 9999999999999999999
Q ss_pred hcccCCC---CCCHHHHHHHHHhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccCCccccCCC
Q 014378 251 MTTSSDQ---RCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKG 327 (426)
Q Consensus 251 l~~~~~~---~~s~~~Yl~ii~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lGiafQI~DDllD~~g~~~~~GK~ 327 (426)
+.+..+. ..++++|++++++|||+||+++|++|++++|.++ ..+.++.||.++|+||||+||++||+++++.+|||
T Consensus 151 l~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~-~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~ 229 (340)
T 2e8v_A 151 IYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSPSSH-HGHSLVPFINLLGIIYQIRDDYLNLKDFQMSSEKG 229 (340)
T ss_dssp HHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHC-----CCC
T ss_pred HHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCC
Confidence 9886553 5699999999999999999999999999999987 57899999999999999999999999999999999
Q ss_pred ccchhccCcccHHHHHHhhhCch---------HHHHHHcccCChhHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHH--
Q 014378 328 SLSDIRHGIITAPILFAMEEFPQ---------LRTVVEQGFEDSSNVDIALEYLG-KSRGIQKTRELAVKHANLAAAA-- 395 (426)
Q Consensus 328 ~g~Dl~~Gk~TlPvl~Al~~~~~---------l~~~l~~~~~~~~~v~~~~~li~-~sg~i~~a~~~a~~~~~~A~~~-- 395 (426)
+|+||++||+|+|+++|++..+. +..++.+...+.+..+.++++|. ++|++++|++++++|.++|++.
T Consensus 230 ~g~Dl~egK~Tlp~i~al~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~ga~~~~~~~~~~~~~~A~~~~~ 309 (340)
T 2e8v_A 230 FAEDITEGKLSFPIVHALNFTKTKGQTEQHNEILRILLLRTSDKDIKLKLIQILEFDTNSLAYTKNFINQLVNMIKNDNE 309 (340)
T ss_dssp TTHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTC--
T ss_pred chhhHhcCCchHHHHHHHHhCcccccchhHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999986432 55566555444444558999999 9999999999999999999999
Q ss_pred ---hccCCCCCCcchHHHHHHHHHHHHHHHh
Q 014378 396 ---IDSLPENNDEDVTKSRRALLDLTHRVIT 423 (426)
Q Consensus 396 ---L~~lp~~~~~~~~~~~~~L~~l~~~v~~ 423 (426)
|+.||+++.. ...+|+.|..|++++.+
T Consensus 310 ~~~L~~lp~~~~~-~~~~~~~L~~l~~~l~~ 339 (340)
T 2e8v_A 310 NKYLPDLASHSDT-ATNLHDELLYIIDHLSE 339 (340)
T ss_dssp -------------------------------
T ss_pred cccHhhCCCCccc-cHHHHHHHHHHHHHHHh
Confidence 9999987510 11178899999998865
No 16
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=100.00 E-value=1.8e-65 Score=506.47 Aligned_cols=292 Identities=21% Similarity=0.264 Sum_probs=254.4
Q ss_pred HHHHhhhCchHHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHHHHHHHHHHH
Q 014378 103 LRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASL 182 (426)
Q Consensus 103 l~~~~~~~~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~AsL 182 (426)
+++.+.+.+|.+.++.+|++..| |||+||.|++++++++|.+. +.+..+|+++||||+|||
T Consensus 2 ~~k~~~~~~~~l~~~~~y~~~~g--GKr~Rp~l~l~~~~~~~~~~-----------------~~~~~~A~avEliH~asL 62 (301)
T 2q80_A 2 MEKTQETVQRILLEPYKYLLQLP--GKQVRTKLSQAFNHWLKVPE-----------------DKLQIIIEVTEMLHNASL 62 (301)
T ss_dssp -----CCHHHHHTHHHHHHTTSS--CHHHHHHHHHHHHHHHCCCH-----------------HHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCcHHHHHHHHHHHhCC--CccHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHH
Confidence 45566777889999999999988 99999999999999997631 257899999999999999
Q ss_pred hhcCCCCCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccCCC-CCCH
Q 014378 183 LHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQ-RCSM 261 (426)
Q Consensus 183 IHDDIiD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l~~~~v~~~ls~~~~~l~~Gq~~dl~~~~~~-~~s~ 261 (426)
|||||||+|++|||+||+|.+||++.|||+||||+++|+..+++.+++++++.+++++..+++||++|+.+..+. ..++
T Consensus 63 iHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~ 142 (301)
T 2q80_A 63 LIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTE 142 (301)
T ss_dssp HHHHHHHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHccccCCCCCCCCCcchhhccCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCH
Confidence 999999999999999999999999999999999999999999998888899999999999999999999885543 5799
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccCCccccCCCccchhccCcccHHH
Q 014378 262 DYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPI 341 (426)
Q Consensus 262 ~~Yl~ii~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lGiafQI~DDllD~~g~~~~~GK~~g~Dl~~Gk~TlPv 341 (426)
++|++++++|||+||+++|++|++++|.++ .+++||.++|+||||+||++|++++++.+|||.|+||++||+|||+
T Consensus 143 ~~y~~~i~~KTa~L~~~~~~~ga~~a~~~~----~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~T~p~ 218 (301)
T 2q80_A 143 EEYKAMVLQKTGGLFGLAVGLMQLFSDYKE----DLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPT 218 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCCS----CCHHHHHHHHHHHHHHHHHHHHHCC------CTTHHHHHTCCCHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCChH----HHHHHHHHHHHHHHHHHHHhhhcCChhhhCCCccchhhcCCcHHHH
Confidence 999999999999999999999999999873 4899999999999999999999999999999999999999999999
Q ss_pred HHHhhhCc---hHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHH
Q 014378 342 LFAMEEFP---QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLT 418 (426)
Q Consensus 342 l~Al~~~~---~l~~~l~~~~~~~~~v~~~~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~~~~L~~l~ 418 (426)
++|++..| .+.+++.+...+.+..+.++++|.++|++++|++++++|.++|.+.|+.+|+++ . |..++
T Consensus 219 i~al~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~A~~~L~~l~~~~------~---L~~l~ 289 (301)
T 2q80_A 219 IHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNP------E---LVALV 289 (301)
T ss_dssp HHHHHHSTTCCHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCH------H---HHHHH
T ss_pred HHHHHcCccchHHHHHHhcCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCH------H---HHHHH
Confidence 99998754 366666555444344445999999999999999999999999999999999776 3 89999
Q ss_pred HHHHhccC
Q 014378 419 HRVITRNK 426 (426)
Q Consensus 419 ~~v~~R~k 426 (426)
+++.+|.+
T Consensus 290 ~~l~~~~~ 297 (301)
T 2q80_A 290 KHLSKMFK 297 (301)
T ss_dssp HHHHTTCC
T ss_pred HHHHHHhc
Confidence 99988764
No 17
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=9.2e-64 Score=497.40 Aligned_cols=282 Identities=26% Similarity=0.354 Sum_probs=241.5
Q ss_pred ccCchhhHHHHHHHHHHHHHHHhhhC---chHHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchhhHhH
Q 014378 85 QLDPFSLVADELSILAKRLRSMVVAE---VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALAT 161 (426)
Q Consensus 85 ~~~~~~~i~~eL~~v~~~l~~~~~~~---~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~~~~~ 161 (426)
..+.+..++++++.|++.|.+.+... ++.+.++++|.+..| |||+||.|++++++++|++.+
T Consensus 30 ~~~~~~~l~~~~~~ve~~l~~~l~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~------------- 94 (324)
T 3uca_A 30 LEDTAMNINSLKEEVDQSLKAYFNKDREYNKVLYDSMAYSINVG--GKRIRPILMLLSYYIYKSDYK------------- 94 (324)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHCCCCSSCHHHHHHHHHHHHHC--CCCHHHHHHHHHHHTTCSCGG-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-------------
Confidence 55667789999999999999999865 788999999999989 999999999999999987532
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhcCC--CCCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcCC--C----HHHH
Q 014378 162 ELRTRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK--N----TEVV 233 (426)
Q Consensus 162 ~~~~~~~~lA~aiEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l~--~----~~v~ 233 (426)
.+..+|+++||||+|||||||| ||+|++|||+||+|++||++.|||+||||+++||+.+++.. + .+++
T Consensus 95 ----~~~~~A~aiEliH~aSLIHDDIP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~i 170 (324)
T 3uca_A 95 ----KILTPAMAIEMIHTYSLIHDDLPCMDNDDLRRGKPTNHKVFGEAIAVLAGDALLNEAMKILVDYSLEEGKSALKAT 170 (324)
T ss_dssp ----GGHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHCCchhccCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHH
Confidence 5678999999999999999999 99999999999999999999999999999999999998743 1 4678
Q ss_pred HHHHHHH--HHHHHHHHHhhcccCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhh
Q 014378 234 TLLATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLI 311 (426)
Q Consensus 234 ~~ls~~~--~~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lGiafQI~ 311 (426)
..++++. ..++.||.+|+.+..+...++++|++|+++|||+||++||++|++++|++++..+.+++||.++|+||||+
T Consensus 171 ~~la~a~g~~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~ 250 (324)
T 3uca_A 171 KIIADAAGSDGMIGGQIVDIINEDKEEISLKELDYMHLKKTGELIKASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQIK 250 (324)
T ss_dssp HHHHHHHSTTTHHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhHHHHhHHHHHHcCCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8888876 68999999999998776789999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCCccccCCCccchhccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHH
Q 014378 312 DDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANL 391 (426)
Q Consensus 312 DDllD~~g~~~~~GK~~g~Dl~~Gk~TlPvl~Al~~~~~l~~~l~~~~~~~~~v~~~~~li~~sg~i~~a~~~a~~~~~~ 391 (426)
||++|++++++.+|||+|+|+++||+|||++++ +++|++.+++|.++
T Consensus 251 DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~a---------------------------------l~~a~~~a~~~~~~ 297 (324)
T 3uca_A 251 DDILDVVGNAKDLGKNVHKDQESNKNNYITIFG---------------------------------LEECKKKCVNITEE 297 (324)
T ss_dssp HHHHHHCCC-----------------CHHHHHC---------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHhccCCHHHhCCCcchHhhcCCccHHHHHH---------------------------------HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999994 47889999999999
Q ss_pred HHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014378 392 AAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 426 (426)
Q Consensus 392 A~~~L~~lp~~~~~~~~~~~~~L~~l~~~v~~R~k 426 (426)
|++.|+.||++. +.|.+|++++++|++
T Consensus 298 A~~~L~~l~~~~--------~~L~~la~~i~~R~~ 324 (324)
T 3uca_A 298 CIEILSSIKGNT--------EPLKVLTMKLLERKF 324 (324)
T ss_dssp HHHHHHTSSSCC--------HHHHHHHHHHHHCCC
T ss_pred HHHHHHhCCCcH--------HHHHHHHHHHHhccC
Confidence 999999999754 789999999999975
No 18
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=100.00 E-value=6.1e-63 Score=490.14 Aligned_cols=279 Identities=27% Similarity=0.378 Sum_probs=229.5
Q ss_pred CchhhHHHHHHHHHHHHHHHhhhC--chHHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhH
Q 014378 87 DPFSLVADELSILAKRLRSMVVAE--VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELR 164 (426)
Q Consensus 87 ~~~~~i~~eL~~v~~~l~~~~~~~--~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~~~~~~~~ 164 (426)
+....+.+....|++.|.+.+... ++.+.++++|.+..| |||+||.|++++++++|++.
T Consensus 4 ~~~~~l~~~~~~ve~~L~~~l~~~~~~~~l~~a~~y~~~~g--GKrlRp~Lvl~~~~~~g~~~----------------- 64 (317)
T 4f62_A 4 NLKQFSTYTQSRVDQYLEQQLSDYAPANQLHNAMRYSLFNG--GKRIRPMLTYASAQLVGDIS----------------- 64 (317)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHC-C--CCCHHHHHHHHHHHHHSCCC-----------------
T ss_pred cHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhCC--CcchHHHHHHHHHHHhCCCH-----------------
Confidence 445667778889999999988765 678999999999988 99999999999999998753
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC--CCCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcCCC------HHHHHHH
Q 014378 165 TRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN------TEVVTLL 236 (426)
Q Consensus 165 ~~~~~lA~aiEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l~~------~~v~~~l 236 (426)
+.+..+|+++||||+|||||||| ||+|++|||+||+|++||++.|||+||||+++||+.+++..+ .+++..+
T Consensus 65 ~~~~~~A~avEliH~aSLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~i~~l 144 (317)
T 4f62_A 65 SLTDASAAALESIHAYSLIHDDLPAMDNDELRRGKPTCHIQFDEATAILAGDALQTFAFELLSNPTSAQPELAIKLIQEL 144 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTSCC-------CCHHHHSCHHHHHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCcccccCCCCcCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 26789999999999999999999 999999999999999999999999999999999999998642 2577888
Q ss_pred HHHH--HHHHHHHHHhhcccCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHhhhhh
Q 014378 237 ATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDD 313 (426)
Q Consensus 237 s~~~--~~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~ga~lag-~~~~~~~~l~~~G~~lGiafQI~DD 313 (426)
++++ ..++.||.+|+.+... ..++++|++|+.+|||+||++||++|++++| ++++..+.+++||.+||+||||+||
T Consensus 145 a~a~g~~~m~~GQ~lDl~~~~~-~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DD 223 (317)
T 4f62_A 145 VVASGRNGMITGQMIDLSSENK-NISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDD 223 (317)
T ss_dssp HHHHSTTTHHHHHHHHHHTSSS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHhHHHHHhccCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8876 4799999999998754 4899999999999999999999999999999 8999999999999999999999999
Q ss_pred cccccCCccccCCCccchhccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Q 014378 314 VLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAA 393 (426)
Q Consensus 314 llD~~g~~~~~GK~~g~Dl~~Gk~TlPvl~Al~~~~~l~~~l~~~~~~~~~v~~~~~li~~sg~i~~a~~~a~~~~~~A~ 393 (426)
++|++++++.+|||+|+|+++||+|||+++ |+++|++.+++|.++|+
T Consensus 224 iLD~~gd~~~~GK~~g~Dl~egK~T~p~l~---------------------------------gle~a~~~a~~~~~~A~ 270 (317)
T 4f62_A 224 IIDLTSDTETLGKTQFSDAEANKATYPKLL---------------------------------GLDGAKALVVRLHEQAI 270 (317)
T ss_dssp HHHTC----------------CCCCHHHHH---------------------------------HHHHHHHHHHHHHHHHH
T ss_pred HHhccCChHhhCCCcchHHhcCCCcHHHHH---------------------------------HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 46889999999999999
Q ss_pred HHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014378 394 AAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 426 (426)
Q Consensus 394 ~~L~~lp~~~~~~~~~~~~~L~~l~~~v~~R~k 426 (426)
+.|+.||+ .++.|.+|++++++|++
T Consensus 271 ~~L~~l~~--------~~~~L~~l~~~~~~R~~ 295 (317)
T 4f62_A 271 AQISEFGD--------KSQPLTDLANYIIDRNH 295 (317)
T ss_dssp HHHGGGGG--------GGHHHHHHHHHHHC---
T ss_pred HHHHhCch--------hHHHHHHHHHHHHHhcc
Confidence 99999985 35799999999999974
No 19
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=100.00 E-value=6.4e-63 Score=500.26 Aligned_cols=299 Identities=16% Similarity=0.146 Sum_probs=262.9
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 014378 112 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 191 (426)
Q Consensus 112 ~~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~AsLIHDDIiD~s 191 (426)
+.+.++.+|.+ .| |||+||.|++++++++|++...+ ....+.+.+.+..+|+++||||+||||||||||+|
T Consensus 34 ~~l~~~~~y~~-~g--GKrlRp~l~l~~~~~~~~~~~~~------~~~~~~~~~~a~~~a~avEliH~asLiHDDI~D~s 104 (362)
T 1yhl_A 34 RYLRIMMDTTC-LG--GKYFRGMTVVNVAEGFLAVTQHD------EATKERILHDACVGGWMIEFLQAHYLVEDDIMDGS 104 (362)
T ss_dssp HHHHHHHHHHH-SS--SCCHHHHHHHHHHHHHHTTSCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhc-CC--cccHHHHHHHHHHHHhCCCcCCC------hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 46888888887 48 99999999999999998642100 00001123344458899999999999999999999
Q ss_pred CCCCCCCccccccCh--hHHHHHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHHHHHHhhccc----------
Q 014378 192 DTRRGIGSLNFVMGN--KLAVLAGDFLLSRACVALASL-----KNTEVVTLLATVVEHLVTGETMQMTTS---------- 254 (426)
Q Consensus 192 ~~RRG~pt~h~~~G~--~~AVlaGD~Lla~a~~~la~l-----~~~~v~~~ls~~~~~l~~Gq~~dl~~~---------- 254 (426)
++|||+||+|.+||+ +.|||+||||+++|+..+++. .+.++++.+++++..+++||++|+.+.
T Consensus 105 ~~RRG~pt~h~~~g~~~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~ 184 (362)
T 1yhl_A 105 VMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEV 184 (362)
T ss_dssp CEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTS
T ss_pred CCCCCCccHHhccCccHhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Confidence 999999999999999 589999999999999999875 447899999999999999999999886
Q ss_pred -C--CC---CCCHHHHHHHHHhhhhhH-HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHhhhhhcccccCCccccCC
Q 014378 255 -S--DQ---RCSMDYYMQKTYYKTASL-ISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGK 326 (426)
Q Consensus 255 -~--~~---~~s~~~Yl~ii~~KTasL-~~~a~~~ga~lag-~~~~~~~~l~~~G~~lGiafQI~DDllD~~g~~~~~GK 326 (426)
. +. ..++++|++|+++|||+| |++||++|++++| ++++..+.+++||.++|+||||+||++|++++++.+||
T Consensus 185 ~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK 264 (362)
T 1yhl_A 185 AQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAHLIGEYFQVQDDVMDCFTPPEQLGK 264 (362)
T ss_dssp CCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS
T ss_pred ccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCC
Confidence 2 22 479999999999999999 9999999999999 88888899999999999999999999999999999999
Q ss_pred CccchhccCcccHHHHHHhhhC-chHHHHHHcccC--ChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 014378 327 GSLSDIRHGIITAPILFAMEEF-PQLRTVVEQGFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENN 403 (426)
Q Consensus 327 ~~g~Dl~~Gk~TlPvl~Al~~~-~~l~~~l~~~~~--~~~~v~~~~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~ 403 (426)
.|+||++||+|||+++|++.. +..++.+.+.+. ++++++.+++++.++|+++++++++++|.++|.+.|+.||+++
T Consensus 265 -~g~Dl~egK~T~p~l~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~ 343 (362)
T 1yhl_A 265 -VGTDIEDAKCSWLAVTFLGKANAAQVAEFKANYGDKDPAKVAVVKRLYSEANLQADFAAYEAEVVREVESLIEQLKVKS 343 (362)
T ss_dssp -CCCTTTTTCCCHHHHHHHTTCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred -ChhhHhcCCchHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999885 455555555443 4678999999999999999999999999999999999999998
Q ss_pred CcchHHHH--HHHHHHHHHHHhccC
Q 014378 404 DEDVTKSR--RALLDLTHRVITRNK 426 (426)
Q Consensus 404 ~~~~~~~~--~~L~~l~~~v~~R~k 426 (426)
.+ +.|..|++++++|+|
T Consensus 344 ------~~~~~~L~~l~~~i~~R~~ 362 (362)
T 1yhl_A 344 ------PTFAESVAVVWEKTHKRKK 362 (362)
T ss_dssp ------HHHHHHHHHHHHHHHTCCC
T ss_pred ------hhHHHHHHHHHHHHHhccC
Confidence 78 999999999999986
No 20
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=100.00 E-value=4.7e-63 Score=492.30 Aligned_cols=279 Identities=27% Similarity=0.328 Sum_probs=241.5
Q ss_pred CchhhHHHHHHHHHHHHHHHhhhC---chHHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHh
Q 014378 87 DPFSLVADELSILAKRLRSMVVAE---VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATEL 163 (426)
Q Consensus 87 ~~~~~i~~eL~~v~~~l~~~~~~~---~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~~~~~~~ 163 (426)
+....+.+....|++.|.+.+... ++.+.++++|.+..| |||+||.|++++++++|++..
T Consensus 8 ~~~~~l~~~~~~ve~~L~~~l~~~~~~~~~l~~a~~y~~~~g--GKrlRP~L~l~~~~~~g~~~~--------------- 70 (324)
T 3ts7_A 8 SLSDFMRSSQERVERALDARLPAADRMPERLHQAMRYSVLGG--GKRMRPLLTYATGQTIGVAAD--------------- 70 (324)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSCCTTSSSHHHHHHHHHHHHSC--CCCHHHHHHHHHHHHHTCCGG---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH---------------
Confidence 445567888889999999988753 678999999999988 999999999999999987532
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCC--CCCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcCC--C------HHHH
Q 014378 164 RTRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK--N------TEVV 233 (426)
Q Consensus 164 ~~~~~~lA~aiEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l~--~------~~v~ 233 (426)
.+..+|+++||||+|||||||| ||+|++|||+||+|++||++.|||+||||+++||+.+++.. + .+++
T Consensus 71 --~~~~~A~avEliH~aSLIHDDip~mD~~~~RRG~pt~h~~~G~~~AIlaGD~L~~~Af~~l~~~~~~~~~~~~~~~~i 148 (324)
T 3ts7_A 71 --LLDGPACAVEFIHVYSLIHDDLPAMDDDDLRRGKPTCHKAYDEATAILAGDGLQALAFHVLAQDPSIAVPAENRIAMI 148 (324)
T ss_dssp --GTHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHhhcCcccccCCCccCCCCchhhhcChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHH
Confidence 5689999999999999999999 99999999999999999999999999999999999999874 2 2578
Q ss_pred HHHHHHH--HHHHHHHHHhhcccCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHhh
Q 014378 234 TLLATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQL 310 (426)
Q Consensus 234 ~~ls~~~--~~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~ga~lag-~~~~~~~~l~~~G~~lGiafQI 310 (426)
+.++++. ..++.||.+|+.+..+ ..++++|++|+++|||+||++||++|++++| ++++..+.+++||.+||+||||
T Consensus 149 ~~la~a~g~~~m~~GQ~lDl~~~~~-~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI 227 (324)
T 3ts7_A 149 ETLAKASGPAGMVGGQAIDLASVGK-KLDLPGLENMHIRKTGALIRASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQI 227 (324)
T ss_dssp HHHHHHHSTTTHHHHHHHHHHTTTC-CCCHHHHHHHHHHHTHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHhHHHHHHccCC-CCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888885 7899999999998766 7899999999999999999999999999999 8999999999999999999999
Q ss_pred hhhcccccCCccccCCCccchhccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHH
Q 014378 311 IDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHAN 390 (426)
Q Consensus 311 ~DDllD~~g~~~~~GK~~g~Dl~~Gk~TlPvl~Al~~~~~l~~~l~~~~~~~~~v~~~~~li~~sg~i~~a~~~a~~~~~ 390 (426)
+||++|++++++.+|||+|+|+++||+|||+++ |+++|++.+++|.+
T Consensus 228 ~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~---------------------------------gle~a~~~a~~~~~ 274 (324)
T 3ts7_A 228 QDDILDEESDTQTLGKTRGKDRDHNKPNYPALL---------------------------------GLSGAKEKAEEMHE 274 (324)
T ss_dssp HHHHHHHTCC---------------CCCHHHHH---------------------------------CHHHHHHHHHHHHH
T ss_pred HHHHHhccCCHHHhCCCccchhhcCCccHHHHH---------------------------------HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 46889999999999
Q ss_pred HHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014378 391 LAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 426 (426)
Q Consensus 391 ~A~~~L~~lp~~~~~~~~~~~~~L~~l~~~v~~R~k 426 (426)
+|++.|+.||++. +.|.+|++++++|++
T Consensus 275 ~A~~~L~~l~~~~--------~~L~~la~~~~~R~~ 302 (324)
T 3ts7_A 275 AALESLAGFGPEA--------DLLRELARFIIQRQS 302 (324)
T ss_dssp HHHHTTTTCCGGG--------HHHHHHHHHHHHTSS
T ss_pred HHHHHHHhCCccH--------HHHHHHHHHHHhccC
Confidence 9999999998753 789999999999974
No 21
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=100.00 E-value=1.3e-62 Score=499.41 Aligned_cols=296 Identities=18% Similarity=0.198 Sum_probs=262.5
Q ss_pred chHHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 014378 111 VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDD 190 (426)
Q Consensus 111 ~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~AsLIHDDIiD~ 190 (426)
.+.+.++++|.. .| |||+||+||+++++++|++... +++..+.+..+|+++||||+||||||||||+
T Consensus 63 ~~~l~~~~~y~~-~g--GKrlRp~l~l~~~~~~~~~~~~----------~~~~~~~a~~~A~avEliH~asLIHDDImD~ 129 (374)
T 2qis_A 63 IARLKEVLEYNA-IG--GKYNRGLTVVVAFRELVEPRKQ----------DADSLQRAWTVGWCVELLQAFFLVADDIMDS 129 (374)
T ss_dssp HHHHHHHHHHHS-SS--SCCHHHHHHHHHHHHHSCGGGC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhc-CC--CcchHHHHHHHHHHHhCCCCcc----------chHHHHHHHHHHHHHHHHHHHHHHHccccCC
Confidence 357889999877 58 9999999999999999863210 0122346788999999999999999999999
Q ss_pred CCCCCCCCccccccChh-HHHHHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHHHHHHhhcccCCC-----CC
Q 014378 191 ADTRRGIGSLNFVMGNK-LAVLAGDFLLSRACVALASL-----KNTEVVTLLATVVEHLVTGETMQMTTSSDQ-----RC 259 (426)
Q Consensus 191 s~~RRG~pt~h~~~G~~-~AVlaGD~Lla~a~~~la~l-----~~~~v~~~ls~~~~~l~~Gq~~dl~~~~~~-----~~ 259 (426)
|++|||+||+|++||++ +||++||+|++.+|..+++. .+.++++.+++++..++.||++|+.+.... ..
T Consensus 130 s~~RRG~pt~h~~~G~~~~Ai~~g~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~ 209 (374)
T 2qis_A 130 SLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRF 209 (374)
T ss_dssp CCEETTEECGGGSTTTGGGHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCGGGC
T ss_pred CCCCCCCccHHHhcCchHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccC
Confidence 99999999999999999 99999999999999988864 347899999999999999999999886542 37
Q ss_pred CHHHHHHHHHhhhhhH-HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHhhhhhcccccCCccccCCCccchhccCcc
Q 014378 260 SMDYYMQKTYYKTASL-ISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGII 337 (426)
Q Consensus 260 s~~~Yl~ii~~KTasL-~~~a~~~ga~lag-~~~~~~~~l~~~G~~lGiafQI~DDllD~~g~~~~~GK~~g~Dl~~Gk~ 337 (426)
++++|++|+.+|||+| |++||++|++++| ++++..+.++.||.++|+||||+||++|++++++.+|| +|+||++||+
T Consensus 210 t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag~a~~~~~~~l~~~g~~lG~aFQI~DDiLD~~gd~~~~GK-~g~Dl~~gK~ 288 (374)
T 2qis_A 210 TEKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGK-IGTDIQDNKC 288 (374)
T ss_dssp CHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHCS-CCCTTTTTCC
T ss_pred CHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhcCC-chhHHHcCCc
Confidence 9999999999999999 9999999999999 99999999999999999999999999999999999999 9999999999
Q ss_pred cHHHHHHhhhC-chHHHHHHcccC--ChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHH
Q 014378 338 TAPILFAMEEF-PQLRTVVEQGFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRAL 414 (426)
Q Consensus 338 TlPvl~Al~~~-~~l~~~l~~~~~--~~~~v~~~~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~~~~L 414 (426)
|||++++++.. +..++.+...+. ++++++++++++.++|+.++++..+++|.++|.+.|+.||+++ .++.|
T Consensus 289 T~p~l~al~~a~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~a~~~L~~lp~~~------~k~~L 362 (374)
T 2qis_A 289 SWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPL------PPAVF 362 (374)
T ss_dssp CHHHHHHHHHCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCTTS------CHHHH
T ss_pred cHHHHHHHHhCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCch------HHHHH
Confidence 99999999985 456666666554 3678999999999999999999999999999999999999988 89999
Q ss_pred HHHHHHHHhccC
Q 014378 415 LDLTHRVITRNK 426 (426)
Q Consensus 415 ~~l~~~v~~R~k 426 (426)
..|++++++|+|
T Consensus 363 ~~l~~~i~~R~k 374 (374)
T 2qis_A 363 LGLARKIYKRRK 374 (374)
T ss_dssp HHHHHHHC----
T ss_pred HHHHHHHHcCcC
Confidence 999999999986
No 22
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=100.00 E-value=3.3e-63 Score=490.10 Aligned_cols=280 Identities=26% Similarity=0.381 Sum_probs=255.1
Q ss_pred hhhHHHHHHHHHHHHHHHhhhC---chHHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHH
Q 014378 89 FSLVADELSILAKRLRSMVVAE---VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 165 (426)
Q Consensus 89 ~~~i~~eL~~v~~~l~~~~~~~---~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~~~~~~~~~ 165 (426)
...+.++++.|++.|++.+... ++.+.++++|.+..| |||+||.|++++++++|++. +
T Consensus 4 ~~~l~~~~~~v~~~l~~~l~~~~~~~~~l~~~~~y~~~~g--GKrlRp~l~l~~~~~~g~~~-----------------~ 64 (299)
T 1rqj_A 4 PQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLG--GKRLRPFLVYATGHMFGVST-----------------N 64 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHSS--CCCHHHHHHHHHHHHTTCCH-----------------H
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------H
Confidence 3567788899999999988764 678999999999988 99999999999999998642 2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC--CCCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcCC--------CHHHHHH
Q 014378 166 RQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK--------NTEVVTL 235 (426)
Q Consensus 166 ~~~~lA~aiEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l~--------~~~v~~~ 235 (426)
.+..+|+++||||+|||||||| ||+|++|||+||+|.+||++.|||+||||+++||+.+++.. ..+++..
T Consensus 65 ~~~~~A~avEliH~asLiHDDiP~~D~s~~RRG~pt~h~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~ 144 (299)
T 1rqj_A 65 TLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISE 144 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHhCCChhhcCCCCCCCCCChhhhcChHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHH
Confidence 6789999999999999999999 99999999999999999999999999999999999999851 2357888
Q ss_pred HHHHH--HHHHHHHHHhhcccCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHhhhh
Q 014378 236 LATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALL-AGQTAEVAILAFDYGKNLGLAYQLID 312 (426)
Q Consensus 236 ls~~~--~~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~ga~l-ag~~~~~~~~l~~~G~~lGiafQI~D 312 (426)
+++++ ..++.||++|+.+..+ ..++++|++++.+|||+||++||++|+++ +|++++..+.+++||.++|+||||+|
T Consensus 145 l~~~~g~~~~~~GQ~~dl~~~~~-~~~~~~y~~i~~~KTa~L~~~~~~~ga~l~ag~~~~~~~~l~~~g~~lG~aFQi~D 223 (299)
T 1rqj_A 145 LASASGIAGMCGGQALDLDAEGK-HVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQD 223 (299)
T ss_dssp HHHHHSTTTHHHHHHHHHHTTTT-CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHhHHHHHhccCC-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88886 7999999999998766 68999999999999999999999999999 99888999999999999999999999
Q ss_pred hcccccCCccccCCCccchhccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 014378 313 DVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLA 392 (426)
Q Consensus 313 DllD~~g~~~~~GK~~g~Dl~~Gk~TlPvl~Al~~~~~l~~~l~~~~~~~~~v~~~~~li~~sg~i~~a~~~a~~~~~~A 392 (426)
|++|++++++.+|||+|+|+++||+|||+++++ ++++..+++|.++|
T Consensus 224 D~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l---------------------------------~~a~~~~~~~~~~A 270 (299)
T 1rqj_A 224 DILDVVGDTATLGKRQGADQQLGKSTYPALLGL---------------------------------EQARKKARDLIDDA 270 (299)
T ss_dssp HHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCH---------------------------------HHHHHHHHHHHHHH
T ss_pred HHHhccCCHHHhCCChhhHHHcCCCcHHHHHHH---------------------------------HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999965 46789999999999
Q ss_pred HHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014378 393 AAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 426 (426)
Q Consensus 393 ~~~L~~lp~~~~~~~~~~~~~L~~l~~~v~~R~k 426 (426)
++.|+.||++.. .++.|.+|++++++|++
T Consensus 271 ~~~L~~l~~~~~-----~~~~L~~l~~~~~~R~~ 299 (299)
T 1rqj_A 271 RQSLKQLAEQSL-----DTSALEALADYIIQRNK 299 (299)
T ss_dssp HHHHHHHHTTTC-----CCHHHHHHHHHHHHCCC
T ss_pred HHHHHhCCCCcH-----HHHHHHHHHHHHHhccC
Confidence 999999987331 56899999999999975
No 23
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=100.00 E-value=3.5e-63 Score=490.03 Aligned_cols=273 Identities=27% Similarity=0.347 Sum_probs=237.5
Q ss_pred HHHHHHHHHHHHhhh--CchHHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHH
Q 014378 95 ELSILAKRLRSMVVA--EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAE 172 (426)
Q Consensus 95 eL~~v~~~l~~~~~~--~~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~ 172 (426)
..+.|++.|.+.+.. .++.+.++++|.+..| |||+||.|++++++++|++.. .++.+|+
T Consensus 9 ~~~~v~~~l~~~l~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~-----------------~~~~~A~ 69 (301)
T 1rtr_A 9 LIDEVNNELSVAINKSVMDTQLEESMLYSLNAG--GKRIRPVLLLLTLDSLNTEYE-----------------LGMKSAI 69 (301)
T ss_dssp HHHHHHHHHHTSSCCCSSCCSHHHHHHHHHTSC--CCCHHHHHHHHHHHHTTSCGG-----------------GGHHHHH
T ss_pred HHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------HHHHHHH
Confidence 445688888887765 5678999999999988 999999999999999986421 4578999
Q ss_pred HHHHHHHHHHhhcCC--CCCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcC------CCHHHHHHHHHHH--HH
Q 014378 173 ITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL------KNTEVVTLLATVV--EH 242 (426)
Q Consensus 173 aiEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l------~~~~v~~~ls~~~--~~ 242 (426)
++||||+|||||||| ||+|++|||+||+|.+||++.|||+||||+++||..+++. ...+++..+++++ ..
T Consensus 70 avEliH~asLiHDDiP~~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~ls~~~g~~~ 149 (301)
T 1rtr_A 70 ALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDDRLTDEVKIKVLQRLSIASGHVG 149 (301)
T ss_dssp HHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHSTTT
T ss_pred HHHHHHHHHHHhCCchhccCCCccCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhH
Confidence 999999999999999 9999999999999999999999999999999999999987 2356888999998 88
Q ss_pred HHHHHHHhhcccCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccCCcc
Q 014378 243 LVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSA 322 (426)
Q Consensus 243 l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lGiafQI~DDllD~~g~~~ 322 (426)
+++||++|+.+..+ ..++++|++++++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++
T Consensus 150 ~~~GQ~~Dl~~~~~-~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~ 228 (301)
T 1rtr_A 150 MVGGQMLDMQSEGQ-PIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEA 228 (301)
T ss_dssp HHHHHHHHHHTTTS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHccCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 99999999998765 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccchhccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCC
Q 014378 323 SLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPEN 402 (426)
Q Consensus 323 ~~GK~~g~Dl~~Gk~TlPvl~Al~~~~~l~~~l~~~~~~~~~v~~~~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~ 402 (426)
.+|||+|+|+++||+|||+++++ +++++.+++|.++|++.|+.||++
T Consensus 229 ~~GK~~g~Dl~~gK~T~p~l~al---------------------------------~~a~~~a~~~~~~A~~~L~~l~~~ 275 (301)
T 1rtr_A 229 KLGKKVGSDLENNKSTYVSLLGK---------------------------------DGAEDKLTYHRDAAVDELTQIDEQ 275 (301)
T ss_dssp C-------------CCHHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHTSCTT
T ss_pred HhCCCcchHHHcCCCcHHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999964 577899999999999999999987
Q ss_pred CCcchHHHHHHHHHHHHHHHhccC
Q 014378 403 NDEDVTKSRRALLDLTHRVITRNK 426 (426)
Q Consensus 403 ~~~~~~~~~~~L~~l~~~v~~R~k 426 (426)
+ .++.|.+|++++++|++
T Consensus 276 ~------~~~~L~~l~~~i~~R~~ 293 (301)
T 1rtr_A 276 F------NTKHLLEIVDLFYSRDH 293 (301)
T ss_dssp S------CCHHHHHHHHHHHCC--
T ss_pred h------HHHHHHHHHHHHHHhhc
Confidence 7 67899999999999974
No 24
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=100.00 E-value=1.2e-62 Score=486.32 Aligned_cols=278 Identities=28% Similarity=0.361 Sum_probs=240.2
Q ss_pred chhhHHHHHHHHHHHHHHHhhhC---chHHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhH
Q 014378 88 PFSLVADELSILAKRLRSMVVAE---VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELR 164 (426)
Q Consensus 88 ~~~~i~~eL~~v~~~l~~~~~~~---~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~~~~~~~~ 164 (426)
....+......|++.|.+.+... ++.+.++++|.+..| |||+||.|++++++++|++..
T Consensus 3 ~~~~~~~~~~~ve~~l~~~~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~---------------- 64 (304)
T 3lsn_A 3 LTAYQASSQARVDAAMHTLFTAPSPELARLYEAMRYSVMNG--GKRVRPLLAYAACEALGGKPE---------------- 64 (304)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCCSSGGGHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHTTCCGG----------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCC--CCchHHHHHHHHHHHhCCCHH----------------
Confidence 34567777888999999998765 578999999999988 999999999999999987532
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC--CCCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcCC----C----HHHHH
Q 014378 165 TRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK----N----TEVVT 234 (426)
Q Consensus 165 ~~~~~lA~aiEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l~----~----~~v~~ 234 (426)
.+..+|+++||||+|||||||| ||+|++|||+||+|++||++.|||+||||+++||+.+++.. + .+++.
T Consensus 65 -~~~~~A~aiEliH~asLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~ 143 (304)
T 3lsn_A 65 -QANGAACAVELIHAYSLVHDDLPAMDDDDLRRGQPTTHKAFDEACAILAGDGLQSLAFSALLDPALSDASAEIRLRMVT 143 (304)
T ss_dssp -GGHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHCCcccccCCCccCCCCchHhhcCHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHH
Confidence 5689999999999999999999 99999999999999999999999999999999999999874 2 35788
Q ss_pred HHHHHHH--HHHHHHHHhhcccCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHhhh
Q 014378 235 LLATVVE--HLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQ-TAEVAILAFDYGKNLGLAYQLI 311 (426)
Q Consensus 235 ~ls~~~~--~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~ga~lag~-~~~~~~~l~~~G~~lGiafQI~ 311 (426)
.+++++. .++.||.+|+.+..+ ..++++|++|+.+|||+||++||++|++++|+ +++..+.+++||.+||+||||+
T Consensus 144 ~l~~a~~~~~~~~GQ~lDl~~~~~-~~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lGlaFQI~ 222 (304)
T 3lsn_A 144 TLAQAAGPAGMVGGQAIDLGSVGL-KLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQ 222 (304)
T ss_dssp HHHHHHSTTTHHHHHHHHHHTTTC-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHchhhHhHhHHHHHHccCC-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8888874 599999999998765 48999999999999999999999999999999 8889999999999999999999
Q ss_pred hhcccccCCccccCCCccchhccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHH
Q 014378 312 DDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANL 391 (426)
Q Consensus 312 DDllD~~g~~~~~GK~~g~Dl~~Gk~TlPvl~Al~~~~~l~~~l~~~~~~~~~v~~~~~li~~sg~i~~a~~~a~~~~~~ 391 (426)
||++|++++++.+|||+|+|+++||+|||+++ ++++|++.++++.++
T Consensus 223 DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~---------------------------------~l~~a~~~a~~~~~~ 269 (304)
T 3lsn_A 223 DDILDVESDTATLGKRQGADIARDKPTYPALL---------------------------------GLAAAKEYALELRDQ 269 (304)
T ss_dssp HHHHHHHHHHHHC------------CCHHHHH---------------------------------CHHHHHHHHHHHHHH
T ss_pred HHHHhccCChHHhCCCcccHHhcCCccHHHHH---------------------------------HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 468889999999999
Q ss_pred HHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014378 392 AAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 426 (426)
Q Consensus 392 A~~~L~~lp~~~~~~~~~~~~~L~~l~~~v~~R~k 426 (426)
|.+.|+.||+. ++.|.+|++++++|++
T Consensus 270 A~~~L~~l~~~--------~~~L~~l~~~~~~R~~ 296 (304)
T 3lsn_A 270 ALHALRPFDAA--------AEPLRELARYIVERRS 296 (304)
T ss_dssp HHHHTTTSCGG--------GHHHHHHHHHHHC---
T ss_pred HHHHHHhCchh--------HHHHHHHHHHHHHhcc
Confidence 99999999853 4789999999999974
No 25
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=100.00 E-value=7.6e-63 Score=493.42 Aligned_cols=278 Identities=25% Similarity=0.308 Sum_probs=236.8
Q ss_pred chhhHHHHHHHHHHHHHHHhhh--------CchHHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchhhH
Q 014378 88 PFSLVADELSILAKRLRSMVVA--------EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDAL 159 (426)
Q Consensus 88 ~~~~i~~eL~~v~~~l~~~~~~--------~~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~~~ 159 (426)
....+.++++.|++.|++.+.. .++.+.++++|++..| |||+||.|++++++++|++.
T Consensus 39 ~~~~l~~~~~~ve~~L~~~l~~~~~~~~~~~~~~l~~~~~y~~~~g--GKrlRP~L~l~~~~~~g~~~------------ 104 (335)
T 2h8o_A 39 FETRLRENAAKTEALLGHLLSGEARADEITRPQNLLEAMRHGVLNG--GKRLRPFLVIESVALLGGDA------------ 104 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSCCTTCCCCCHHHHHHHHHHHHTS--CSCHHHHHHHHHHHHTTCCH------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH------------
Confidence 3456677888999999998866 4678999999999988 99999999999999998642
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHhhcCC--CCCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcC--C-----CH
Q 014378 160 ATELRTRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL--K-----NT 230 (426)
Q Consensus 160 ~~~~~~~~~~lA~aiEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l--~-----~~ 230 (426)
+.+..+|+++||||+|||||||| ||+|++|||+||+|.+||++.|||+||||+++||+.+++. + ..
T Consensus 105 -----~~~~~~A~aiEliH~asLIHDDiPamD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~ 179 (335)
T 2h8o_A 105 -----EAGLHVGAALECLHCYSLVHDDLPAMDDDDLRRGQPTVHRKFDEATAILAGDSLLTLAFDIIASDDNPLAAERKA 179 (335)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHSTTSCSCHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHCCchhccCCCcCCCCCcHhhhcChHHHHHHHHHHHHHHHHHHHHhcccCCchHHH
Confidence 25688999999999999999999 9999999999999999999999999999999999999987 1 24
Q ss_pred HHHHHHHHHH--HHHHHHHHHhhcccCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q 014378 231 EVVTLLATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAY 308 (426)
Q Consensus 231 ~v~~~ls~~~--~~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lGiaf 308 (426)
++++.+++++ ..++.||++|+.+..+ ..++++|++++++|||+||+++|++|++++|++++..+.+++||.++|+||
T Consensus 180 ~~~~~ls~a~g~~~~~~GQ~lDl~~~~~-~~~~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAF 258 (335)
T 2h8o_A 180 ALVISLARAAGIGGMAGGQALDLAAEKK-APDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSF 258 (335)
T ss_dssp HHHHHHHHHHSTTSHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHccCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 6888999998 8899999999998766 689999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccccCCccccCCCccchhccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHH
Q 014378 309 QLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKH 388 (426)
Q Consensus 309 QI~DDllD~~g~~~~~GK~~g~Dl~~Gk~TlPvl~Al~~~~~l~~~l~~~~~~~~~v~~~~~li~~sg~i~~a~~~a~~~ 388 (426)
||+||++|++++++.+|||+|+|+++||+|||++++ ++++++.+++|
T Consensus 259 QI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~---------------------------------le~a~~~a~~~ 305 (335)
T 2h8o_A 259 QLADDLLDLTADAATMGKATGKDAARGKGTLVALRG---------------------------------EAWAREKLQEQ 305 (335)
T ss_dssp HHHHHHHHHC-----------------CCCHHHHHC---------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHH---------------------------------HHHHHHHHHHH
Confidence 999999999999999999999999999999999995 47889999999
Q ss_pred HHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014378 389 ANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 426 (426)
Q Consensus 389 ~~~A~~~L~~lp~~~~~~~~~~~~~L~~l~~~v~~R~k 426 (426)
.++|++.|+.||+ .++.|.+|++++++|++
T Consensus 306 ~~~A~~~L~~l~~--------~~~~L~~l~~~i~~R~~ 335 (335)
T 2h8o_A 306 VAEASELLAPYGE--------KAAILIAAARFIAERKS 335 (335)
T ss_dssp HHHHHHHTGGGGG--------GGHHHHHHHHHHHC---
T ss_pred HHHHHHHHHhCch--------hHHHHHHHHHHHHhccC
Confidence 9999999999984 35789999999999974
No 26
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=100.00 E-value=1.7e-62 Score=484.99 Aligned_cols=276 Identities=25% Similarity=0.343 Sum_probs=224.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhC---chHHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHH
Q 014378 90 SLVADELSILAKRLRSMVVAE---VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 166 (426)
Q Consensus 90 ~~i~~eL~~v~~~l~~~~~~~---~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~~~~~~~~~~ 166 (426)
.-+...+..|++.|.+.+... ++.+.++++|.+..| |||+||.|++++++++|++.. .
T Consensus 11 ~~~~~~~~~ve~~l~~~l~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~-----------------~ 71 (302)
T 3p8r_A 11 EALSSYQQRNNQQLDQWLNRIPFQTLPLIEAMRYGLLLG--GKRARPYLVYITGQMLGCELS-----------------D 71 (302)
T ss_dssp THHHHHHHHHHHHHHHHHHTCSCTTSSHHHHHHHHHHSC--CSCHHHHHHHHHHHTTTCCGG-----------------G
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------H
Confidence 357788999999999998764 578999999999988 999999999999999987532 5
Q ss_pred HHHHHHHHHHHHHHHHhhcCC--CCCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcCC--C------HHHHHHH
Q 014378 167 QQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK--N------TEVVTLL 236 (426)
Q Consensus 167 ~~~lA~aiEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l~--~------~~v~~~l 236 (426)
+..+|+++||||+|||||||| ||+|++|||+||+|++||++.|||+||||+++||+.+++.. + .+++..+
T Consensus 72 ~~~~A~aiEliH~asLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l 151 (302)
T 3p8r_A 72 LDTPASAVECIHAYSLIHDDLPAMDDDELRRGKPTCHIQFDEATAILTGDALQTLAFTILAEGDLSAAGETQRVAMLQAL 151 (302)
T ss_dssp THHHHHHHHHHHHHHHHHHTCHHHHCCC--------------HHHHHHHHHHHHHHHHHHHHSCCCHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCcccccCCCcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHH
Confidence 689999999999999999999 99999999999999999999999999999999999999874 1 2578888
Q ss_pred HHHH--HHHHHHHHHhhcccCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHhhhhh
Q 014378 237 ATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDD 313 (426)
Q Consensus 237 s~~~--~~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~ga~lag-~~~~~~~~l~~~G~~lGiafQI~DD 313 (426)
++++ ..++.||.+|+.+.. ...++++|++|+.+|||+||++||++|++++| ++++..+.+++||.++|+||||+||
T Consensus 152 ~~a~g~~~~~~GQ~lDl~~~~-~~~s~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DD 230 (302)
T 3p8r_A 152 AEASGAQGMCLGQALDLAAEN-RLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDD 230 (302)
T ss_dssp HHHHSTTTHHHHHHHHHHTTT-SCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHhHHHHhHHHHHHccC-CCCCHHHHHHHhccCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8886 689999999999874 46899999999999999999999999999999 7888889999999999999999999
Q ss_pred cccccCCccccCCCccchhccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Q 014378 314 VLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAA 393 (426)
Q Consensus 314 llD~~g~~~~~GK~~g~Dl~~Gk~TlPvl~Al~~~~~l~~~l~~~~~~~~~v~~~~~li~~sg~i~~a~~~a~~~~~~A~ 393 (426)
++|++++++.+|||.|+|+++||+|||++++ +++|+..+++|.++|+
T Consensus 231 ilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~---------------------------------l~~a~~~a~~~~~~A~ 277 (302)
T 3p8r_A 231 ILDIISDTETLGKPQGSDQELNKSTYPALLG---------------------------------LEGAQQKAHTLLQEAL 277 (302)
T ss_dssp HHHHTTC---------------CCCHHHHHH---------------------------------HHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHhCCCcchHHhcCCchHHHHHH---------------------------------HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999994 5889999999999999
Q ss_pred HHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014378 394 AAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 426 (426)
Q Consensus 394 ~~L~~lp~~~~~~~~~~~~~L~~l~~~v~~R~k 426 (426)
+.|+.||++. +.|.+|++++++|++
T Consensus 278 ~~L~~l~~~~--------~~L~~l~~~~~~R~~ 302 (302)
T 3p8r_A 278 LALEAIPYNT--------EHLEEFARYVVERKN 302 (302)
T ss_dssp HHHTTCSSCT--------HHHHHHHHHHHHCCC
T ss_pred HHHHhCCccH--------HHHHHHHHHHHhccC
Confidence 9999999764 689999999999975
No 27
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=100.00 E-value=9.6e-63 Score=502.37 Aligned_cols=330 Identities=17% Similarity=0.152 Sum_probs=271.1
Q ss_pred ccCchhhHHHHHHHHHHHHHHHhhhC-------chHHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchh
Q 014378 85 QLDPFSLVADELSILAKRLRSMVVAE-------VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVED 157 (426)
Q Consensus 85 ~~~~~~~i~~eL~~v~~~l~~~~~~~-------~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~ 157 (426)
+......+.+-+..+++.|.+.+.+. .+.+.++++|.+ .| |||+||+||+++++++|+..+.. +....+
T Consensus 22 ~~~~~~~f~~~~~~v~~~l~~~l~~~~~~~~~~~~~l~~~m~Y~~-~G--GKr~Rp~l~l~~~~~l~~~~~~~-~~~~~~ 97 (390)
T 3dyh_A 22 ASMPMQMFMQVYDEIQMFLLEELELKFDMDPNRVRYLRKMMDTTC-LG--GKYNRGLTVIDVAESLLSLSPNN-NGEEDD 97 (390)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH-SS--SCCHHHHHHHHHHHHTSCC----------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhc-CC--ccchhHHHHHHHHHHhCCccccc-cccccc
Confidence 44445555555566666666655432 235888999998 78 99999999999999987511000 000000
Q ss_pred hHhHHhHHHHHHHHH----HHHHHHHHHHhhcCCCCCCCCCCCCCccccccChhHHHHHHHHHHHHH--HHHHHcC-CC-
Q 014378 158 ALATELRTRQQCIAE----ITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRA--CVALASL-KN- 229 (426)
Q Consensus 158 ~~~~~~~~~~~~lA~----aiEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a--~~~la~l-~~- 229 (426)
....+..+++|+ ++||||+||||||||||+|++|||+||+|+.||++.||++||+++..+ +.++++. .+
T Consensus 98 ---~~~~~~~~~~A~~~g~avEliH~asLIHDDImD~s~~RRG~Pt~h~~~G~~~ail~gD~ll~~a~a~~ll~~~~~~~ 174 (390)
T 3dyh_A 98 ---GARRKRVLHDACVCGWMIEFLQAHYLVEDDIMDNSVTRRGKPCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFADR 174 (390)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECGGGSTTCCHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred ---cCCHHHHHHHHHhhhhHHHHHHHHHHHHcCCcCCCCCcCCCccccccCChHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 001124455555 899999999999999999999999999999999999999999999755 5777653 22
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHhhccc----------CC------CCCCHHHHHHHHHhhhhhH-HHHHHHHHHHHcCC
Q 014378 230 ---TEVVTLLATVVEHLVTGETMQMTTS----------SD------QRCSMDYYMQKTYYKTASL-ISNSCKAIALLAGQ 289 (426)
Q Consensus 230 ---~~v~~~ls~~~~~l~~Gq~~dl~~~----------~~------~~~s~~~Yl~ii~~KTasL-~~~a~~~ga~lag~ 289 (426)
.++++++++++..++.||++|+.+. .. ...++++|++|+++|||+| |++||++|++++|+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~e~~~~d~~~~~~~~~~~~~~t~~~y~~i~~~KTa~L~~~~~~~~ga~laga 254 (390)
T 3dyh_A 175 PFLQDLLCRFNRVDYTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEA 254 (390)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHTTTSCGGGCCTTSCCCCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHcCC
Confidence 3789999999999999999999872 11 2579999999999999999 99999999999999
Q ss_pred CHHH-HHHHHHHHHHHHHHHhhhhhcccccCCccccCCCccchhccCcccHHHHHHhhh-CchHHHHHHcccC--ChhHH
Q 014378 290 TAEV-AILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEE-FPQLRTVVEQGFE--DSSNV 365 (426)
Q Consensus 290 ~~~~-~~~l~~~G~~lGiafQI~DDllD~~g~~~~~GK~~g~Dl~~Gk~TlPvl~Al~~-~~~l~~~l~~~~~--~~~~v 365 (426)
+++. .+.++.||.+||+||||+||++|++|+++.+|| +|+||++||+|||+++|++. .|+.++.+.+.+. +++++
T Consensus 255 ~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK-~g~Dl~egK~T~pvi~al~~~~~~~r~~L~~~~~~~~~~~v 333 (390)
T 3dyh_A 255 LPTVDMGVTEELAMLMGEYFQVQDDVMDCFTPPERLGK-VGTDIQDAKCSWLAVTFLAKASSAQVAEFKANYGSGDSEKV 333 (390)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS-CCCTTTTTCCCHHHHHHHHHCCHHHHHHHHTTTTCCCHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHhCC-CcchhhcCCccHHHHHHHHhCCHHHHHHHHHHhCCCCHHHH
Confidence 8775 788999999999999999999999999999999 99999999999999999998 4677777766554 67889
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014378 366 DIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 426 (426)
Q Consensus 366 ~~~~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~~~~L~~l~~~v~~R~k 426 (426)
++++++++++|++++++.+++++.++|.+.|+.||+++. ..++.|..|++++++|+|
T Consensus 334 ~~v~~l~~~~g~~~~~~~~~~~~~~~a~~~i~~l~~~~~----~~~~~l~~l~~~i~~R~k 390 (390)
T 3dyh_A 334 ATVRRLYEEADLQGDYVAYEAAVAEQVKELIEKLRLCSP----GFAASVETLWGKTYKRQK 390 (390)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHTTTTCCC
T ss_pred HHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHcCCCCch----HHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999881 028899999999999987
No 28
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=100.00 E-value=2.8e-62 Score=482.94 Aligned_cols=276 Identities=30% Similarity=0.388 Sum_probs=235.7
Q ss_pred hHHHHHHHHHHHHHHHhhh--CchHHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHH
Q 014378 91 LVADELSILAKRLRSMVVA--EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQ 168 (426)
Q Consensus 91 ~i~~eL~~v~~~l~~~~~~--~~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~ 168 (426)
+-+..+..|++.|.+.+.. .++.+.++++|.+..| |||+||.|++++++++|++.. +.+.
T Consensus 13 ~~~~~~~~ve~~l~~~l~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~----------------~~~~ 74 (302)
T 3p8l_A 13 FSQQHLPLVEKVMVDFIAEYTENERLKEAMLYSIHAG--GKRLRPLLVLTTVAAFQKEME----------------TQDY 74 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHTTCCCC----------------HHHH
T ss_pred hhHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCcc----------------HHHH
Confidence 3456678888888888875 3778999999999988 999999999999999987532 2578
Q ss_pred HHHHHHHHHHHHHHhhcCC--CCCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcCCC-----HHHHHHHHHHH-
Q 014378 169 CIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-----TEVVTLLATVV- 240 (426)
Q Consensus 169 ~lA~aiEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l~~-----~~v~~~ls~~~- 240 (426)
.+|+++||||+|||||||| ||+|++|||+||+|++||++.|||+||||+++||..+++... .++++.+++++
T Consensus 75 ~~A~avEliH~asLIHDDIP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~a~g 154 (302)
T 3p8l_A 75 QVAASLEMIHTYSLIHDDLPAMDDDDLRRGKPTNHKVFGEATAILAGDGLLTGAFQLLSLSQLGLSEKVLLMQQLAKAAG 154 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHCCchhccCCCccCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhh
Confidence 9999999999999999999 999999999999999999999999999999999999998542 26788888887
Q ss_pred -HHHHHHHHHhhcccCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccC
Q 014378 241 -EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTG 319 (426)
Q Consensus 241 -~~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lGiafQI~DDllD~~g 319 (426)
..++.||++|+.+... ..++++|++|+.+|||+||++||++|++++|++++..+.+++||.++|+||||+||++|+++
T Consensus 155 ~~~~~~GQ~lDl~~~~~-~~t~~~y~~i~~~KTg~L~~~~~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDilD~~~ 233 (302)
T 3p8l_A 155 NQGMVSGQMGDIEGEKV-SLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATS 233 (302)
T ss_dssp TTTHHHHHHHHHHTTTS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHccCC-CCCHHHHHHHHHcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 7899999999998755 68999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCccchhccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccC
Q 014378 320 TSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSL 399 (426)
Q Consensus 320 ~~~~~GK~~g~Dl~~Gk~TlPvl~Al~~~~~l~~~l~~~~~~~~~v~~~~~li~~sg~i~~a~~~a~~~~~~A~~~L~~l 399 (426)
+++.+|||.|+|+++||+|||++++ ++++++.++++.++|.+.|+.|
T Consensus 234 d~~~~GK~~g~Dl~egK~T~p~l~~---------------------------------l~~a~~~~~~~~~~A~~~L~~~ 280 (302)
T 3p8l_A 234 TEADLGKKVGRDEALNKSTYPALLG---------------------------------IAGAKDALTHQLAEGSAVLEKI 280 (302)
T ss_dssp -----------------CCHHHHHC---------------------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHhCCChhhHHhcCCCcHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999994 5788899999999999999999
Q ss_pred CC---CCCcchHHHHHHHHHHHHHHHhc
Q 014378 400 PE---NNDEDVTKSRRALLDLTHRVITR 424 (426)
Q Consensus 400 p~---~~~~~~~~~~~~L~~l~~~v~~R 424 (426)
|+ ++ .++.|.+|++++++|
T Consensus 281 ~~~~~~~------~~~~L~~l~~~~~~R 302 (302)
T 3p8l_A 281 KANVPNF------SEEHLANLLTQLQLR 302 (302)
T ss_dssp HHHCSSC------CHHHHHHHHHHTSCC
T ss_pred ccccCCh------hHHHHHHHHHHHhhC
Confidence 86 56 678999999999987
No 29
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=100.00 E-value=3.9e-62 Score=494.73 Aligned_cols=295 Identities=20% Similarity=0.196 Sum_probs=265.2
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 014378 112 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 191 (426)
Q Consensus 112 ~~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~AsLIHDDIiD~s 191 (426)
+.+.++++|.+ .| |||+||+||+++++++|++.+. +.+..+.+..+|+++||||+||||||||||+|
T Consensus 57 ~~l~~~~~y~~-~g--GKrlRp~l~l~~~~~~~~~~~~----------~~~~~~~~~~~A~aiEliH~asLiHDDImD~s 123 (367)
T 1uby_A 57 ARLKEVLQYNA-PG--GKCNRGLTVVAAYRELSGPGQK----------DAESLRCALAVGWCIELFQAASLVADDIMDQS 123 (367)
T ss_dssp HHHHHHHHHHS-SS--SCCHHHHHHHHHHHHHCCGGGC----------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhc-CC--CcchhHHHHHHHHHHhCCCccC----------ChhhHHHHHHHHHHHHHHHHHHHHhCcccCCC
Confidence 46889999988 48 9999999999999999863110 01222367899999999999999999999999
Q ss_pred CCCCCCCccccccChh-HHHHHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHHHHHHhhcccCCC-----CCC
Q 014378 192 DTRRGIGSLNFVMGNK-LAVLAGDFLLSRACVALASL-----KNTEVVTLLATVVEHLVTGETMQMTTSSDQ-----RCS 260 (426)
Q Consensus 192 ~~RRG~pt~h~~~G~~-~AVlaGD~Lla~a~~~la~l-----~~~~v~~~ls~~~~~l~~Gq~~dl~~~~~~-----~~s 260 (426)
++|||+||+|++||++ .+|+.||++++.+|.++++. .+.++++.+++++..++.||++|+.+.... ..+
T Consensus 124 ~~RRG~pt~h~~~g~~~~ai~dg~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t 203 (367)
T 1uby_A 124 LTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAYQTELGQMLDLITAPVSKVDLSHFS 203 (367)
T ss_dssp CEETTEECGGGSTTTTTHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCC
T ss_pred CCCCCCCChhhccCcHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCC
Confidence 9999999999999999 99999999999999998874 347899999999999999999999886532 579
Q ss_pred HHHHHHHHHhhhhhH-HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHhhhhhcccccCCccccCCCccchhccCccc
Q 014378 261 MDYYMQKTYYKTASL-ISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIIT 338 (426)
Q Consensus 261 ~~~Yl~ii~~KTasL-~~~a~~~ga~lag-~~~~~~~~l~~~G~~lGiafQI~DDllD~~g~~~~~GK~~g~Dl~~Gk~T 338 (426)
+++|++|+.+|||+| |++||++|++++| ++++..+.++.||.++|+||||+||++|++++++.+|| .|+||++||+|
T Consensus 204 ~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK-~g~Dl~egK~T 282 (367)
T 1uby_A 204 EERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFGDPALTGA-VGTDIQDNKCS 282 (367)
T ss_dssp HHHHHHHHHHHTHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSC-CCCCSSSCCCC
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCC-chhhHHcCCch
Confidence 999999999999999 9999999999999 89999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHhhh-CchHHHHHHcccC--ChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHH
Q 014378 339 APILFAMEE-FPQLRTVVEQGFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALL 415 (426)
Q Consensus 339 lPvl~Al~~-~~~l~~~l~~~~~--~~~~v~~~~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~~~~L~ 415 (426)
||++++++. .|+.++.+.+.+. ++++++++++++.++|+.+.++..+++|.++|.+.|+.+|+++ .++.|.
T Consensus 283 ~p~l~al~~~~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~------~k~~L~ 356 (367)
T 1uby_A 283 WLVVQCLQRVTPEQRQLLEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEKHSNRL------PKEIFL 356 (367)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCSSS------CTHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHhCCCcH------HHHHHH
Confidence 999999987 4566667766554 3678999999999999888898999999999999999999887 889999
Q ss_pred HHHHHHHhccC
Q 014378 416 DLTHRVITRNK 426 (426)
Q Consensus 416 ~l~~~v~~R~k 426 (426)
.|++++++|+|
T Consensus 357 ~l~~~i~~R~~ 367 (367)
T 1uby_A 357 GLAQKIYKRQK 367 (367)
T ss_dssp HHHHHHCCCCC
T ss_pred HHHHHHHhCcC
Confidence 99999999986
No 30
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=2.6e-62 Score=499.36 Aligned_cols=318 Identities=18% Similarity=0.173 Sum_probs=257.1
Q ss_pred cccCchhhHHHHHHHHHHHHHHH-hhhCc-----hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchh
Q 014378 84 EQLDPFSLVADELSILAKRLRSM-VVAEV-----PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVED 157 (426)
Q Consensus 84 ~~~~~~~~i~~eL~~v~~~l~~~-~~~~~-----~~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~ 157 (426)
.+.+.|+.+.+++...-. .. +..+. +.+.++.+|.. .| |||+||+||+++++++|++..
T Consensus 35 ~f~~~~~~~~~~l~~~l~---~~~~~~~~~~~~~~~~~~~~~Y~~-~G--GKrlRp~Lvl~~~~~~g~~~~--------- 99 (395)
T 2ihi_A 35 FFRNMYDKYRDAFLSHLN---EYSLEEEIKEHISKYYKLLFDYNC-LG--GKNNRGILVILIYEYVKNRDI--------- 99 (395)
T ss_dssp CTTTTHHHHHHHHHHHHH---TSSCCHHHHHHHHHHHHHHHHHHH-SS--SCCHHHHHHHHHHHHHC---C---------
T ss_pred HHHHHHHHHHHHHHHHHh---hCCCChhhhhhHHHHHHHHHHhhc-cC--cccHHHHHHHHHHHHhCCCCC---------
Confidence 377888877777664432 21 11111 46788999988 68 999999999999999986421
Q ss_pred hHhHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCccccccChhH--HHHHHHHHHHHHHHHHHcC-C----CH
Q 014378 158 ALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKL--AVLAGDFLLSRACVALASL-K----NT 230 (426)
Q Consensus 158 ~~~~~~~~~~~~lA~aiEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~--AVlaGD~Lla~a~~~la~l-~----~~ 230 (426)
+.+..+.+..+|+++||||+||||||||||+|++|||+||+|++||++. |||+||+|++.++.++++. . ..
T Consensus 100 --~~~~~~~a~~lA~aiEliH~asLIHDDImD~s~~RRG~pt~h~~~g~~~~~AI~~gd~L~~~a~~ll~~~~~~~~~~~ 177 (395)
T 2ihi_A 100 --NSSEWEKAACLAWCIEILQAAFLVADDIMDKGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYV 177 (395)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHH
T ss_pred --ChhHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCccccCCccHHHHHHHHHHHHHHHHHHHHHhccCchhHH
Confidence 1223457889999999999999999999999999999999999999998 9999999999999998763 1 26
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-c-----------------c---CC---CCCCHHHHHHHHHhhhhhH-HHHHHHHHHH
Q 014378 231 EVVTLLATVVEHLVTGETMQMT-T-----------------S---SD---QRCSMDYYMQKTYYKTASL-ISNSCKAIAL 285 (426)
Q Consensus 231 ~v~~~ls~~~~~l~~Gq~~dl~-~-----------------~---~~---~~~s~~~Yl~ii~~KTasL-~~~a~~~ga~ 285 (426)
++++++++++..++.||.+|+. | . .. ...++++|++|+.+|||+| |.+||++|++
T Consensus 178 ~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~~e~~~dl~~~t~~~y~~i~~~KTa~Ls~~~~~~~ga~ 257 (395)
T 2ihi_A 178 DVIATFRDATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGML 257 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSHHHHCSSSCCCTTCCCCC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhhcccccccccccccccccccccccccCCCHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 8999999999999999999992 1 1 11 1578999999999999999 9999999999
Q ss_pred HcCCCHHH--HHHHHHHHHHHHHHHhhhhhcccccCCccccCCCccchhccCcccHHHHHHhhh-CchHHHHHHcccC--
Q 014378 286 LAGQTAEV--AILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEE-FPQLRTVVEQGFE-- 360 (426)
Q Consensus 286 lag~~~~~--~~~l~~~G~~lGiafQI~DDllD~~g~~~~~GK~~g~Dl~~Gk~TlPvl~Al~~-~~~l~~~l~~~~~-- 360 (426)
++|++++. .+.++.||.+||+||||+||++|++|+++.+|| .|+||++||+|||+++|++. .|+.++.+.+.+.
T Consensus 258 lag~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK-~g~Dl~egK~T~p~l~al~~~~~~~~~~L~~~~~~~ 336 (395)
T 2ihi_A 258 LAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGK-VGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKN 336 (395)
T ss_dssp HTTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHSCC----------CTTTTTCCCHHHHHHHHHCCHHHHHHHHHHCC-C
T ss_pred HcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHhCC-CcchhhcCCchHHHHHHHHhCCHHHHHHHHHHhCCC
Confidence 99998887 899999999999999999999999999999999 99999999999999999998 4666666655554
Q ss_pred ChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhcc
Q 014378 361 DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRN 425 (426)
Q Consensus 361 ~~~~v~~~~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~~~~L~~l~~~v~~R~ 425 (426)
++++++.+++++.++|+++++++.++++.++|++.|+.+|+++ .++.|..|++++++|.
T Consensus 337 ~~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~------~r~~L~~l~~~i~~R~ 395 (395)
T 2ihi_A 337 NLACVKVIDSLYEQYKIRKHYESYEKAQKAKILSAINELHHEG------IEYVLKYLLEILFTGV 395 (395)
T ss_dssp CHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHTTSCCHH------HHHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHHHHhCCCch------HHHHHHHHHHHHhccC
Confidence 5678999999999999999999999999999999999999987 9999999999999984
No 31
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=100.00 E-value=5.8e-62 Score=479.88 Aligned_cols=274 Identities=27% Similarity=0.327 Sum_probs=226.5
Q ss_pred hhhHHHHHHHHHHHHHHHhhhC-chHHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHH
Q 014378 89 FSLVADELSILAKRLRSMVVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQ 167 (426)
Q Consensus 89 ~~~i~~eL~~v~~~l~~~~~~~-~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~ 167 (426)
...+.+....|++.|.+.+... ++.+.++++|. ..| |||+||.|++++++++|++. +.+
T Consensus 4 ~~~~~~~~~~ve~~l~~~~~~~~~~~l~~~~~y~-~~g--GKrlRp~L~l~~~~~~g~~~-----------------~~~ 63 (297)
T 3m0g_A 4 SERLKEVQDAVETAMAAAIGRLPAGDLRDAMAYA-AQG--GKRLRAFLAIESAAIHGISM-----------------AQA 63 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCSHHHHHHHHH-HSC--SCCHHHHHHHHHHHHTTCCH-----------------HHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHH-cCC--CCcHHHHHHHHHHHHhCCCH-----------------HHH
Confidence 3456777788999999988765 66899999999 878 99999999999999998642 368
Q ss_pred HHHHHHHHHHHHHHHhhcCC--CCCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcCC--C----HHHHHHHHHH
Q 014378 168 QCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK--N----TEVVTLLATV 239 (426)
Q Consensus 168 ~~lA~aiEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l~--~----~~v~~~ls~~ 239 (426)
..+|+++||||+|||||||| ||+|++|||+||+|++||++.|||+||||+++||+.+++.. + .++++.++++
T Consensus 64 ~~~A~avEliH~asLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~l~~~ 143 (297)
T 3m0g_A 64 MPAALAVEALHAYSLVHDDMPCMDNDDLRRGLPTVHKKWDDATAVLAGDALQTLAFELCTDPVLGSAENRVALVAALAQA 143 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHTTCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCccccCCCCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 89999999999999999999 99999999999999999999999999999999999998764 2 3688899999
Q ss_pred H--HHHHHHHHHhhcccC-CCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhccc
Q 014378 240 V--EHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLD 316 (426)
Q Consensus 240 ~--~~l~~Gq~~dl~~~~-~~~~s~~~Yl~ii~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lGiafQI~DDllD 316 (426)
+ ..++.||.+|+.+.. ....++++|++|+.+|||+||++||++|++++|++++ .+++||.+||+||||+||++|
T Consensus 144 ~g~~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DDilD 220 (297)
T 3m0g_A 144 SGAEGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGADRG---PLTAYATALGLAFQIADDILD 220 (297)
T ss_dssp HSTTTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHTTCC-
T ss_pred HhHhHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcCCCHH---HHHHHHHHHHHHHHHHHHHHh
Confidence 8 889999999999862 3367999999999999999999999999999998876 799999999999999999999
Q ss_pred ccCCccccCCCccchhccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHh
Q 014378 317 FTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAI 396 (426)
Q Consensus 317 ~~g~~~~~GK~~g~Dl~~Gk~TlPvl~Al~~~~~l~~~l~~~~~~~~~v~~~~~li~~sg~i~~a~~~a~~~~~~A~~~L 396 (426)
++++++.+|||+|+|+++||+|||++++ +++|++.++++.++|.+.|
T Consensus 221 ~~~~~~~~GK~~g~Dl~~gK~T~p~l~~---------------------------------l~~a~~~~~~~~~~A~~~L 267 (297)
T 3m0g_A 221 VEGNEEAAGKRLGKDAEAHKATFVSLLG---------------------------------LAGAKSRAADLVAEAEAAL 267 (297)
T ss_dssp --------------------CCHHHHHC---------------------------------SSHHHHHHHHHHHHHHHHT
T ss_pred ccCCHHHhCCCccchhhcCCccHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999994 4678899999999999999
Q ss_pred ccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014378 397 DSLPENNDEDVTKSRRALLDLTHRVITRNK 426 (426)
Q Consensus 397 ~~lp~~~~~~~~~~~~~L~~l~~~v~~R~k 426 (426)
+.||++. +.|.+|++++++|++
T Consensus 268 ~~~~~~~--------~~L~~l~~~~~~R~~ 289 (297)
T 3m0g_A 268 APYGEAA--------STLRACARYVIERDK 289 (297)
T ss_dssp GGGGGGG--------HHHHHHHHHHTC---
T ss_pred HhCCCCH--------HHHHHHHHHHHHhcc
Confidence 9998754 689999999999974
No 32
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=5.3e-61 Score=491.20 Aligned_cols=291 Identities=19% Similarity=0.200 Sum_probs=240.1
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 014378 113 KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDAD 192 (426)
Q Consensus 113 ~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~AsLIHDDIiD~s~ 192 (426)
.+..+.+|.+. | |||+||+||+++++++|+.... .+..+.+..+|+++||||+||||||||||+|+
T Consensus 67 ~~~~~~~Y~~~-G--GKRlRP~l~l~~~~~~~~~~~~-----------~~~~~~~~~~A~aiEliH~asLiHDDImD~s~ 132 (395)
T 3mav_A 67 YYKLLFDYNCL-G--GKNNRGILVILIYEYVKNRDIN-----------SSEWEKAACLAWCIEILQAAFLVADDIMDKGE 132 (395)
T ss_dssp HHHHHHHHHHS-S--SCCHHHHHHHHHHHHHHC-CCC-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHhcCCC-C--chhhhHHHHHHHHHHhCCCCCC-----------cccHHHHHHHHHHHHHHHHHHHHHhHHhcCCC
Confidence 45566777775 8 9999999999999999875321 23345788999999999999999999999999
Q ss_pred CCCCCCccccccChhHHHHHHHHHHH--HHHHHHHcC-----CCHHHHHHHHHHHHHHHHHHHHhhcccCC---------
Q 014378 193 TRRGIGSLNFVMGNKLAVLAGDFLLS--RACVALASL-----KNTEVVTLLATVVEHLVTGETMQMTTSSD--------- 256 (426)
Q Consensus 193 ~RRG~pt~h~~~G~~~AVlaGD~Lla--~a~~~la~l-----~~~~v~~~ls~~~~~l~~Gq~~dl~~~~~--------- 256 (426)
+|||+||+|++||++.||++||+|+. .++.++... ...++++.++++...+|+||.+|+.+..+
T Consensus 133 ~RRG~pt~h~~~g~~~Ail~GD~ll~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~ 212 (395)
T 3mav_A 133 MRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTIIGQHLDTNIFSDKYSDAHREI 212 (395)
T ss_dssp EETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHCC-CCC
T ss_pred CCCCchhhhhccchHHHHHhhhHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHh
Confidence 99999999999999999999999774 456665532 23679999999999999999999875321
Q ss_pred ---------------CCCCHHHHHHHHHhhhhhH-HHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHHhhhhhccccc
Q 014378 257 ---------------QRCSMDYYMQKTYYKTASL-ISNSCKAIALLAGQT--AEVAILAFDYGKNLGLAYQLIDDVLDFT 318 (426)
Q Consensus 257 ---------------~~~s~~~Yl~ii~~KTasL-~~~a~~~ga~lag~~--~~~~~~l~~~G~~lGiafQI~DDllD~~ 318 (426)
...++++|++|+++|||+| |.+||.+|++++|.+ +...+.+++||.+||+||||+||+||++
T Consensus 213 ~~~~~~~~e~~~~~~~~~t~~~Y~~ii~~KTa~L~~~~~~~~ga~~ag~~~d~~~~~~l~~~g~~lG~aFQI~DDiLD~~ 292 (395)
T 3mav_A 213 DVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIF 292 (395)
T ss_dssp CSSCSSSCCCCCCCGGGCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhcccccchhcccccccCCHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2468999999999999999 899999999999975 3467899999999999999999999999
Q ss_pred CCccccCCCccchhccCcccHHHHHHhhhC-chHHHHHHcccC--ChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Q 014378 319 GTSASLGKGSLSDIRHGIITAPILFAMEEF-PQLRTVVEQGFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAA 395 (426)
Q Consensus 319 g~~~~~GK~~g~Dl~~Gk~TlPvl~Al~~~-~~l~~~l~~~~~--~~~~v~~~~~li~~sg~i~~a~~~a~~~~~~A~~~ 395 (426)
|+++.+|| +|+||++||+|||+++|++.. +..+..+.+.+. ++++++.+.+++.++|+.++++..++++.++|.+.
T Consensus 293 gd~~~~GK-~g~Dl~egK~T~p~i~al~~~~~~~r~~L~~~~~~~d~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~a~~~ 371 (395)
T 3mav_A 293 GDSTKTGK-VGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQKAKILSA 371 (395)
T ss_dssp ---------CCCTTTTTCCCHHHHHHHHHSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCHhhhcc-cccHHhcCCchHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999 699999999999999999874 555555554443 56788899999999999999999999999999999
Q ss_pred hccCCCCCCcchHHHHHHHHHHHHHHHhc
Q 014378 396 IDSLPENNDEDVTKSRRALLDLTHRVITR 424 (426)
Q Consensus 396 L~~lp~~~~~~~~~~~~~L~~l~~~v~~R 424 (426)
|+.+|... .+..|..+++++.++
T Consensus 372 l~~l~~~~------l~~ll~~lle~i~~~ 394 (395)
T 3mav_A 372 INELHHEG------IEYVLKYLLEILFTG 394 (395)
T ss_dssp HHTSCCHH------HHHHHHHHHHHC---
T ss_pred HHhCCcHH------HHHHHHHHHHHHhcC
Confidence 99999776 777888888877665
No 33
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=100.00 E-value=1e-61 Score=479.75 Aligned_cols=279 Identities=24% Similarity=0.324 Sum_probs=241.2
Q ss_pred hhhHHHHHHHHHHHHHHHhhhC--chHHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHH
Q 014378 89 FSLVADELSILAKRLRSMVVAE--VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 166 (426)
Q Consensus 89 ~~~i~~eL~~v~~~l~~~~~~~--~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~~~~~~~~~~ 166 (426)
...+.+.+..|++.|.+.+... ++.+.++++|.+..| |||+||.|++++++++|++.. +
T Consensus 9 ~~~~~~~~~~ve~~l~~~l~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~-----------------~ 69 (309)
T 3pde_A 9 IAFEDQWVPALNAPLKQAILADSQDAQLAAAMTYSVLAG--GKRLRPLLTVATMQSLGVTFV-----------------P 69 (309)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHTCSCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHTTCCCC-----------------H
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhCC--CCchHHHHHHHHHHHhCCCHH-----------------H
Confidence 3466777888999998888765 678999999999988 999999999999999987543 4
Q ss_pred H--HHHHHHHHHHHHHHHhhcCC--CCCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcCCC-----HHHHHHHH
Q 014378 167 Q--QCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-----TEVVTLLA 237 (426)
Q Consensus 167 ~--~~lA~aiEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l~~-----~~v~~~ls 237 (426)
. ..+|+++||||+|||||||| ||+|++|||+||+|++||+++|||+||||++.||+.+++... .++++.++
T Consensus 70 ~~~~~~A~aiEliH~aSLIHDDiP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~l~ 149 (309)
T 3pde_A 70 ERHWRPVMALELLHTYSLIHDDLPAMDNDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQWLTATDLPATMQAALVQALA 149 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHH
T ss_pred HhHhHHHHHHHHHHHHHHHHCCchhccCCCCCCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 5 79999999999999999999 999999999999999999999999999999999999998653 26788898
Q ss_pred HHH--HHHHHHHHHhhcccCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcc
Q 014378 238 TVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVL 315 (426)
Q Consensus 238 ~~~--~~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lGiafQI~DDll 315 (426)
+++ ..++.||.+|+.+... ..++++|++|+++|||+||++||++|++++|++++..+.+++||.+||+||||+||++
T Consensus 150 ~a~g~~~m~~GQ~lDl~~~~~-~~t~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiL 228 (309)
T 3pde_A 150 TAAGPSGMVAGQAKDIQSEHV-NLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDIL 228 (309)
T ss_dssp HHHSTTTHHHHHHHHHHTTTC-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHhHHHHhHHHHHHccCC-CCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 886 7899999999998755 6799999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccccCCCccchhccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Q 014378 316 DFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAA 395 (426)
Q Consensus 316 D~~g~~~~~GK~~g~Dl~~Gk~TlPvl~Al~~~~~l~~~l~~~~~~~~~v~~~~~li~~sg~i~~a~~~a~~~~~~A~~~ 395 (426)
|++++++.+|||+|+|+++||+|||+++++ +.+...++++.++|.+.
T Consensus 229 D~~gd~~~~GK~~g~Dl~egK~T~p~l~al---------------------------------~~a~~~~~~~~~~a~~~ 275 (309)
T 3pde_A 229 DVVSSPAEMGKATQKDADEAKNTYPGKLGL---------------------------------IGANQALIDTIHSGQAA 275 (309)
T ss_dssp HHHCC-----------CTTTSSSHHHHHCH---------------------------------HHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHhCCCccchhhcCCccHHHHHHH---------------------------------HHhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999955 66778889999999999
Q ss_pred hccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014378 396 IDSLPENNDEDVTKSRRALLDLTHRVITRNK 426 (426)
Q Consensus 396 L~~lp~~~~~~~~~~~~~L~~l~~~v~~R~k 426 (426)
|+.+|.+-. ... |.+|++++++|+.
T Consensus 276 l~~~~~~~~-----~~~-L~~l~~~~~~r~~ 300 (309)
T 3pde_A 276 LQGLPTSTQ-----RDD-LAAFFSYFDTERV 300 (309)
T ss_dssp HHTSCCCHH-----HHH-HHGGGGGSCTTTT
T ss_pred HHHhhhccC-----HHH-HHHHHHHHHHhhc
Confidence 999876531 223 9999999999964
No 34
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=100.00 E-value=1.3e-61 Score=480.44 Aligned_cols=275 Identities=26% Similarity=0.369 Sum_probs=235.8
Q ss_pred hhHHHHHHHHHHHHHHHhhhC---chHHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHH
Q 014378 90 SLVADELSILAKRLRSMVVAE---VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 166 (426)
Q Consensus 90 ~~i~~eL~~v~~~l~~~~~~~---~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~~~~~~~~~~ 166 (426)
..+.+....|++.|.+.+... ++.+.++++|.+..| |||+||.|++++++++|++. +.
T Consensus 11 ~~l~~~~~~ve~~L~~~l~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~-----------------~~ 71 (313)
T 3lom_A 11 QVIDKYTQRHELYLEQLLNEIIIPAPQIRSALHYALFSG--GKRIRPILVYLAGDLIDVDQ-----------------GV 71 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHCCS--SCCHHHHHHHHHHHHTTCCH-----------------HH
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------HH
Confidence 455666678888888888753 678999999999988 99999999999999998642 36
Q ss_pred HHHHHHHHHHHHHHHHhhcCC--CCCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcCC-C-------HHHHHHH
Q 014378 167 QQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK-N-------TEVVTLL 236 (426)
Q Consensus 167 ~~~lA~aiEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l~-~-------~~v~~~l 236 (426)
+..+|+++||||+|||||||| ||+|++|||+||+|++||++.|||+||||+++||+.+++.. + .+++..+
T Consensus 72 ~~~~A~aiEliH~aSLIHDDip~mD~~~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~i~~l 151 (313)
T 3lom_A 72 LDIIAAALELTHCYSLIHDDLPAMDNDDLRRGKPSCHKAFDEATAILVGDGMQALAIEVLLMRLSPLLPAAQVVAITQVL 151 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcccccCCCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Confidence 889999999999999999999 99999999999999999999999999999999999998752 1 2477788
Q ss_pred HHHH--HHHHHHHHHhhcccCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHhhhh
Q 014378 237 ATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAG--QTAEVAILAFDYGKNLGLAYQLID 312 (426)
Q Consensus 237 s~~~--~~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~ga~lag--~~~~~~~~l~~~G~~lGiafQI~D 312 (426)
++++ ..++.||.+|+.+..+...++++|++|+.+|||+||+++|++ |+++| ++++..+.+++||.+||+||||+|
T Consensus 152 a~a~g~~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~-a~lag~~a~~~~~~~l~~~g~~lGlaFQI~D 230 (313)
T 3lom_A 152 VNASGISGMVSGQSLDLSELAKSSVTEEQLREIHLLKTGKLILACFEM-VLAAQHEVSEQIKSALRTYGKHIGLVFQMQD 230 (313)
T ss_dssp HHHHSTTTHHHHHHHHHHTTTSSCCCHHHHHHHHHHHTHHHHHHHHHH-HHTTCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHhHHHHhHHHHHHccCCCCCCHHHHHHHHHcCcHHHHHHHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8876 689999999999987767899999999999999999999999 99999 899999999999999999999999
Q ss_pred hcccccCCccccCCCccchhccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 014378 313 DVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLA 392 (426)
Q Consensus 313 DllD~~g~~~~~GK~~g~Dl~~Gk~TlPvl~Al~~~~~l~~~l~~~~~~~~~v~~~~~li~~sg~i~~a~~~a~~~~~~A 392 (426)
|++|++++++.+|||+|+|+++||+|||+++ ++++|++.++++.++|
T Consensus 231 DilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~---------------------------------~l~~a~~~a~~~~~~A 277 (313)
T 3lom_A 231 DYLDLYAPTQILGKGRSSDQANQKTTFATLF---------------------------------NKQQLEEEIAVHYQIA 277 (313)
T ss_dssp HHHHHHCC---------------CCCHHHHS---------------------------------CHHHHHHHHHHHHHHH
T ss_pred HHHhccCCHHhhCCCCcchhhcCCccHHHHH---------------------------------HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 4688899999999999
Q ss_pred HHHhccCCCCCCcchHHHHHHHHHHHHHHHhcc
Q 014378 393 AAAIDSLPENNDEDVTKSRRALLDLTHRVITRN 425 (426)
Q Consensus 393 ~~~L~~lp~~~~~~~~~~~~~L~~l~~~v~~R~ 425 (426)
.+.|+.||++. +.|.+|++++++|+
T Consensus 278 ~~~L~~l~~~~--------~~L~~la~~~~~R~ 302 (313)
T 3lom_A 278 MDSLRLFGSKA--------AALIELTKQLQNRS 302 (313)
T ss_dssp HHTTTTTGGGG--------HHHHHHHHHHHHHH
T ss_pred HHHHHhCCccH--------HHHHHHHHHHHhcc
Confidence 99999998643 68999999999996
No 35
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=100.00 E-value=1.2e-62 Score=496.69 Aligned_cols=310 Identities=16% Similarity=0.173 Sum_probs=266.7
Q ss_pred cccCchhhHHHHHHHHHHHHHHHhhhCc-----hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchhh
Q 014378 84 EQLDPFSLVADELSILAKRLRSMVVAEV-----PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDA 158 (426)
Q Consensus 84 ~~~~~~~~i~~eL~~v~~~l~~~~~~~~-----~~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~~ 158 (426)
.++..|+.+.+++...-..+ ....+. +.+.++..|.. .| |||+||+||+++++++|+..++
T Consensus 27 ~f~~~~~~l~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~y~~-~G--GKrlRp~l~l~~~~~~g~~~~~--------- 92 (368)
T 2her_A 27 DFINYYDKFKVIVYNVLKKL--PLNDEIRKPVIEYYLNCIDYNV-KK--GKHIRGKILVLISSLSSAYSNI--------- 92 (368)
T ss_dssp TGGGTHHHHHHHHHTTCCCC--TTSCCTTTTHHHHHHHHHHHHT-TS--STTTTTC-CHHHHTTTTCCCSS---------
T ss_pred HHHHHHHHHHHHHHHHHHhC--CCCcchhhhHHHHHHHHHHHhh-CC--CCccchHHHHHHHHHhCCCCcc---------
Confidence 36666766666655432211 111122 56778888887 68 9999999999999999764221
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCccccccChhHHHHHHHHHH---HHHHHHHHcC-C---CHH
Q 014378 159 LATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLL---SRACVALASL-K---NTE 231 (426)
Q Consensus 159 ~~~~~~~~~~~lA~aiEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVlaGD~Ll---a~a~~~la~l-~---~~~ 231 (426)
..+.+..+|+++||||+||||||||||+|++|||+||+|++||+..|||+||||+ ++++.++++. . ..+
T Consensus 93 ----~~~~~~~~A~avEllH~asLIHDDImD~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~a~~ll~~~~~~~~~~~ 168 (368)
T 2her_A 93 ----KRDSIYLLGWVVEAIQALILIADDIMDSGKFRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELSSVFGNDIVMK 168 (368)
T ss_dssp ----SHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTTHHHHCHHHHHH
T ss_pred ----cHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCCCccHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcCcChHHH
Confidence 1247889999999999999999999999999999999999999999999999999 8888877753 2 247
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCC-CCCH-HHHHHHHHhhhhhH-HHHHHHHHHHHcCCCHHH--HHHHHHHHHHHHH
Q 014378 232 VVTLLATVVEHLVTGETMQMTTSSDQ-RCSM-DYYMQKTYYKTASL-ISNSCKAIALLAGQTAEV--AILAFDYGKNLGL 306 (426)
Q Consensus 232 v~~~ls~~~~~l~~Gq~~dl~~~~~~-~~s~-~~Yl~ii~~KTasL-~~~a~~~ga~lag~~~~~--~~~l~~~G~~lGi 306 (426)
+++++++++..++.||++|+.+.... ..+. ++|++|+++|||+| |++||++|++++|++++. .+.++.||.++|+
T Consensus 169 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag~~~~~~~~~~l~~~g~~lG~ 248 (368)
T 2her_A 169 IQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGE 248 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHH
Confidence 89999999999999999999987643 4455 99999999999999 999999999999998887 8899999999999
Q ss_pred HHhhhhhcccccCCccccCCCccchhccCcccHHHHHHhhh-CchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHH
Q 014378 307 AYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEE-FPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELA 385 (426)
Q Consensus 307 afQI~DDllD~~g~~~~~GK~~g~Dl~~Gk~TlPvl~Al~~-~~~l~~~l~~~~~~~~~v~~~~~li~~sg~i~~a~~~a 385 (426)
||||+||++|++ .+|| .|+||++||+|||+++|++. .|+.++.+.+.+..++ +++++++.++|+++++++++
T Consensus 249 aFQI~DD~LD~~----~~GK-~g~Dl~egK~T~pvi~al~~a~~~~r~~L~~~~~~~~--~~v~~li~~~g~~~~~~~~~ 321 (368)
T 2her_A 249 FYQVHNDVSDYL----FNDS-NADDICRFKLTWPLQKSFEIADEEMKLKISENYGKNS--SLVKDCYNLLKINEHYLEYQ 321 (368)
T ss_dssp HHHHHHHHHHHH----SCCS-SSCTTTTTCCCHHHHSSTTTCCHHHHHHHHHHTTTCH--HHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHH----hcCC-CCChHhCCcccHHHHHHHHhCCHHHHHHHHHHhCCcH--HHHHHHHHHCCcHHHHHHHH
Confidence 999999999999 7899 99999999999999999997 5677888877776655 99999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhc
Q 014378 386 VKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITR 424 (426)
Q Consensus 386 ~~~~~~A~~~L~~lp~~~~~~~~~~~~~L~~l~~~v~~R 424 (426)
++|.++|++.|+.+|+++ .|+.|..|++++.++
T Consensus 322 ~~~~~~A~~~L~~lp~~~------~k~~L~~l~~~i~~~ 354 (368)
T 2her_A 322 RNALDYLIKLVKDITDDS------LQKVFIHLIHQISEL 354 (368)
T ss_dssp HHHHHHHHHHHTTCSCHH------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHHH
Confidence 999999999999999987 999999999999876
No 36
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=100.00 E-value=3.4e-61 Score=474.06 Aligned_cols=272 Identities=26% Similarity=0.392 Sum_probs=237.1
Q ss_pred HHHHHHHHHHHhhhC-chHHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHHH
Q 014378 96 LSILAKRLRSMVVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEIT 174 (426)
Q Consensus 96 L~~v~~~l~~~~~~~-~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~ai 174 (426)
...|++.|.+.+... .|.+.++++|.+..| |||+||.|++++++++|++.+ .+..+|+++
T Consensus 11 ~~~i~~~l~~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~-----------------~~~~~A~av 71 (295)
T 3ipi_A 11 YRYVEAGIKESITLIEDPGLKKMVEHVCHSG--GKRIRPIILLLVSEICSGSYS-----------------RSLNAALAV 71 (295)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTC--CCCHHHHHHHHHHHHHHSCCG-----------------GGHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------HHHHHHHHH
Confidence 466777777777653 378999999999988 999999999999999987532 567899999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccc
Q 014378 175 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTS 254 (426)
Q Consensus 175 EliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l~~~~v~~~ls~~~~~l~~Gq~~dl~~~ 254 (426)
||||+||||||||||+|++|||+||+|++||++.|||+||||+++||..++... .++++.+++++..++.||++|+.+.
T Consensus 72 EliH~asLIHDDi~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~ll~~~~-~~~~~~~~~~~~~~~~GQ~~dl~~~ 150 (295)
T 3ipi_A 72 EMMHSASLIHDDLLDQGLVRRNLPSAPEKFGPSGALLCGDYLIAKSIAFISPYG-EKVIQDFGKAGMDMAEGEVLDLKLE 150 (295)
T ss_dssp HHHHHHHHHHHHHHHHHTSCTTSCCCCCSSCHHHHHHHHHHHHHHHHHHHGGGC-HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHCcCcCCCCCCCCCccHHHhcCccHHHHHHHHHHHHHHHHHHHch-HHHHHHHHHHHHHHHccchHHHHcc
Confidence 999999999999999999999999999999999999999999999999998764 7899999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccCCccccCCCccchhcc
Q 014378 255 SDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH 334 (426)
Q Consensus 255 ~~~~~s~~~Yl~ii~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lGiafQI~DDllD~~g~~~~~GK~~g~Dl~~ 334 (426)
.+. .++++|++++++|||+||++||++|++++|++++..+.+++||+++|+||||+||++|++++++ || |+.+
T Consensus 151 ~~~-~t~~~y~~~i~~KTg~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~--gk----d~~~ 223 (295)
T 3ipi_A 151 DES-FGENDYFKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEVVE--GK----ESKF 223 (295)
T ss_dssp ------CHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--C---------
T ss_pred CCC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--CC----Cccc
Confidence 653 7889999999999999999999999999999999999999999999999999999999999873 65 5789
Q ss_pred CcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHH
Q 014378 335 GIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRAL 414 (426)
Q Consensus 335 Gk~TlPvl~Al~~~~~l~~~l~~~~~~~~~v~~~~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~~~~L 414 (426)
||+|+|++++++..+ .+++++|++.+++|.++|++.|+.||+++ .++.|
T Consensus 224 gk~Tlp~l~al~~~~-------------------------~~~le~a~~~a~~~~~~A~~~L~~lp~~~------~~~~L 272 (295)
T 3ipi_A 224 TSETLPHIYMKSTSK-------------------------EEALKKSIDCVKLHVAAAKETLETFRECP------ARDKL 272 (295)
T ss_dssp --CCHHHHHTTTSCH-------------------------HHHHHHHHHHHHHHHHHHHHHHTTSCCSH------HHHHH
T ss_pred CcccHHHHHHHhcCc-------------------------hhHHHHHHHHHHHHHHHHHHHHHhCCCch------HHHHH
Confidence 999999999986532 24699999999999999999999999988 89999
Q ss_pred HHHHHHHHhcc
Q 014378 415 LDLTHRVITRN 425 (426)
Q Consensus 415 ~~l~~~v~~R~ 425 (426)
.+|+++++.|.
T Consensus 273 ~~l~~~~~~~~ 283 (295)
T 3ipi_A 273 FQITDYITVDM 283 (295)
T ss_dssp HHHHHHTTGGG
T ss_pred HHHHHHHHHhC
Confidence 99999999874
No 37
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=7.3e-61 Score=469.31 Aligned_cols=264 Identities=27% Similarity=0.336 Sum_probs=232.5
Q ss_pred HHHHHHHHHHhhh-CchHHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHHHH
Q 014378 97 SILAKRLRSMVVA-EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITE 175 (426)
Q Consensus 97 ~~v~~~l~~~~~~-~~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiE 175 (426)
++|+..|.+.+.. .++.+.++++|.+..| |||+||.|++++++++|++. +.+..+|+++|
T Consensus 16 ~~v~~~l~~~l~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~-----------------~~~~~~A~avE 76 (284)
T 2ftz_A 16 EXVEERIREILRPGWDLLTEEAMLYSATVG--GXRIRPLLVLTLGEDLGVEE-----------------EXLLDVAVAVE 76 (284)
T ss_dssp HHHHHHHHHHHSCSSCCHHHHHHHHHHHSC--CCCHHHHHHHHHHHHHTCCH-----------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCcCH-----------------HHHHHHHHHHH
Confidence 4566666666633 3568999999999988 99999999999999998642 25788999999
Q ss_pred HHHHHHHhhcCC--CCCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcc
Q 014378 176 MIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTT 253 (426)
Q Consensus 176 liH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l~~~~v~~~ls~~~~~l~~Gq~~dl~~ 253 (426)
|||+|||||||| ||+|++|||+||+|.+||++.|||+||||+++||+.+++.++.++++.+++++..++.||++|+.+
T Consensus 77 liH~asLIHDDIP~~D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~l~~~~~~~~~GQ~ldl~~ 156 (284)
T 2ftz_A 77 LFHTASLIHDDLPPIDNADFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQISXIGNSXIFEEFSETAYXLLLGEAMDVEF 156 (284)
T ss_dssp HHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCchhcCCCCCCCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhhHHHHHh
Confidence 999999999999 999999999999999999999999999999999999999877799999999999999999999998
Q ss_pred cCCC-CCCHHHHHHHHHhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccCCccccCCCccchh
Q 014378 254 SSDQ-RCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDI 332 (426)
Q Consensus 254 ~~~~-~~s~~~Yl~ii~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lGiafQI~DDllD~~g~~~~~GK~~g~Dl 332 (426)
..+. ..++++|++++++|||+||++||++|++++|++++ .+++||.++|+||||+||++|++++++.+|||+|+|+
T Consensus 157 ~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl 233 (284)
T 2ftz_A 157 ERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGXDHT---XMXLLGEXFGVAFQIYDDLXDILGSFEKVGKDLGKDT 233 (284)
T ss_dssp HHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCC--------
T ss_pred ccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCChh---HHHHHHHHHHHHHHHHHhhhhhcCCHHhhCCCcchhc
Confidence 7665 78999999999999999999999999999998876 8999999999999999999999999999999999999
Q ss_pred ccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHH
Q 014378 333 RHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRR 412 (426)
Q Consensus 333 ~~Gk~TlPvl~Al~~~~~l~~~l~~~~~~~~~v~~~~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~~~ 412 (426)
+ |+|||++++ ++++++++++|.++|++.|+.||+ + .++
T Consensus 234 ~--K~T~p~l~~---------------------------------l~~a~~~a~~~~~~A~~~L~~l~~-~------~~~ 271 (284)
T 2ftz_A 234 E--XVTLVXXVG---------------------------------IQXAREMADXYYEEVLXGIESEGL-F------RTL 271 (284)
T ss_dssp -----CHHHHHC---------------------------------HHHHHHHHHHHHHHHHHHHHHTTC-H------HHH
T ss_pred c--ccchHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHhCCc-h------hHH
Confidence 9 999999995 467889999999999999999987 5 788
Q ss_pred H-HHHHHHHHHhc
Q 014378 413 A-LLDLTHRVITR 424 (426)
Q Consensus 413 ~-L~~l~~~v~~R 424 (426)
. |.+|++++++|
T Consensus 272 ~~L~~l~~~~~~R 284 (284)
T 2ftz_A 272 FLLXELXQMVEER 284 (284)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcC
Confidence 8 99999999987
No 38
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=100.00 E-value=1.9e-58 Score=457.31 Aligned_cols=273 Identities=24% Similarity=0.294 Sum_probs=227.9
Q ss_pred HHHHHHHHhh---hCchHHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHHHH
Q 014378 99 LAKRLRSMVV---AEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITE 175 (426)
Q Consensus 99 v~~~l~~~~~---~~~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiE 175 (426)
|++.|.+.+. +.++.+.++++|.+..| |||+||.|++++++++|++.. .++..+.+..+|+++|
T Consensus 18 ve~~l~~~~~~~~~~~~~l~~a~~y~~~~g--GKrlRp~Lvl~~~~~~g~~~~-----------~~~~~~~~~~~A~aiE 84 (311)
T 3llw_A 18 FESFLKNHHLHLESFHPYLEKAFFEMVLNG--GKRFRPKLFLAVLCALVGQKD-----------YSNQQTEYFKIALSIE 84 (311)
T ss_dssp HHHHHHTCCCCCCSSCSSHHHHHHHHHHSC--CCCHHHHHHHHHHHHHSCHHH-----------HHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccCCcHHHHHHHHHHhhCC--CCchHHHHHHHHHHHhCCCcc-----------cccchHHHHHHHHHHH
Confidence 7888888774 35678999999999988 999999999999999986420 1233357889999999
Q ss_pred HHHHHHHhhcCC--CCCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHc--CCC---HHHHHHHHHH--HHHHHHH
Q 014378 176 MIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALAS--LKN---TEVVTLLATV--VEHLVTG 246 (426)
Q Consensus 176 liH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~--l~~---~~v~~~ls~~--~~~l~~G 246 (426)
|||+|||||||| ||+|++|||+||+|++||+..|||+||||++.||+.+++ +.+ .+++..++++ +..++.|
T Consensus 85 liH~aSLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~i~~la~a~g~~~m~~G 164 (311)
T 3llw_A 85 CLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNALLESHIIVELIKILSANGGIKGMILG 164 (311)
T ss_dssp HHHHHHHHHHTSTTTTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSTTTHHHH
T ss_pred HHHHHHHHHCCccccCCCcccCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999 999999999999999999999999999999999999987 332 2477888888 5799999
Q ss_pred HHHhhcccCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHHHHHHhhhhhcccccCCccccC
Q 014378 247 ETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVA-ILAFDYGKNLGLAYQLIDDVLDFTGTSASLG 325 (426)
Q Consensus 247 q~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~ga~lag~~~~~~-~~l~~~G~~lGiafQI~DDllD~~g~~~~~G 325 (426)
|.+|+.+. +...++++|++|+.+|||+||+++|++|++++|++++.. +.+++||.+||+||||+||++|++++++.+|
T Consensus 165 Q~lDl~~~-~~~~t~~~y~~i~~~KTg~L~~~a~~lga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~G 243 (311)
T 3llw_A 165 QALDCYFE-NTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESG 243 (311)
T ss_dssp HHHHHHTT-TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHhc-CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHC
Confidence 99999986 356899999999999999999999999999999998888 9999999999999999999999999999999
Q ss_pred CCccchhccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCc
Q 014378 326 KGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDE 405 (426)
Q Consensus 326 K~~g~Dl~~Gk~TlPvl~Al~~~~~l~~~l~~~~~~~~~v~~~~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~ 405 (426)
|+.|+ ++||+|||+++++ +.++..++++.++|.+.|+.|+.-..
T Consensus 244 K~~g~--~~gK~T~p~l~~l---------------------------------~~a~~~~~~~~~~a~~~l~~~~~~~~- 287 (311)
T 3llw_A 244 KTTHL--DSAKNSFVNLLGL---------------------------------ERANNYAQTLKTEVLNDLDALKPAYP- 287 (311)
T ss_dssp ---------CCSCHHHHHCH---------------------------------HHHHHHHHHHHHHHHHHHTTSTTTCH-
T ss_pred ccccc--ccCcchHHHHHHH---------------------------------HHHHHHHHHHHHHHHHHhhhccccCc-
Confidence 99877 9999999999954 66778899999999999999764220
Q ss_pred chHHH-HHHHHHHHHHHHhcc
Q 014378 406 DVTKS-RRALLDLTHRVITRN 425 (426)
Q Consensus 406 ~~~~~-~~~L~~l~~~v~~R~ 425 (426)
. .+.|.+|++++++|.
T Consensus 288 ----~~~~~l~~l~~~~~~r~ 304 (311)
T 3llw_A 288 ----LLQENLNALLNTLFKGE 304 (311)
T ss_dssp ----HHHHHHHHHHHHHHC--
T ss_pred ----cHHHHHHHHHHHHHhcc
Confidence 2 578999999999995
No 39
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=100.00 E-value=1.7e-57 Score=446.69 Aligned_cols=266 Identities=24% Similarity=0.329 Sum_probs=220.1
Q ss_pred HHHHHHHHHHhh---hCchHHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHH
Q 014378 97 SILAKRLRSMVV---AEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEI 173 (426)
Q Consensus 97 ~~v~~~l~~~~~---~~~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~a 173 (426)
+.+++.|.+.+. +.+|.+.++++|.+..| |||+||.|++++++++|++. .+.+..+|++
T Consensus 7 ~~i~~~l~~~~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~~~~~----------------~~~~~~~A~a 68 (291)
T 3npk_A 7 ELFIHHLEKNLPKVESFHPFFNEALALMLKAG--GKHFRAQLLLSVVQSNKPEL----------------LNQALDVALA 68 (291)
T ss_dssp HHHHHHHHTCCCCCCSSCSSHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCGGG----------------HHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCcHHHHHHHHHHHhCC--CcchHHHHHHHHHHHhCCCc----------------HHHHHHHHHH
Confidence 446666666553 35678999999999988 99999999999999997531 1368899999
Q ss_pred HHHHHHHHHhhcCC--CCCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcCC-C----HHHHHHHHHH--HHHHH
Q 014378 174 TEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK-N----TEVVTLLATV--VEHLV 244 (426)
Q Consensus 174 iEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l~-~----~~v~~~ls~~--~~~l~ 244 (426)
+||||+|||||||| ||+|++|||+||+|++||++.|||+||||++.||+.+++.. + .++++.++++ +..++
T Consensus 69 iEliH~aSLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~~~g~~~~~ 148 (291)
T 3npk_A 69 LEFIHTYSLIHDDLPAMDNADFRRGIPTLHKSYDETTAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGMV 148 (291)
T ss_dssp HHHHHHHHHHHHTSTTTTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHSTTTHH
T ss_pred HHHHHHHHHHHCCcccccCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999 99999999999999999999999999999999999998754 2 3578889998 89999
Q ss_pred HHHHHhhcccCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccCCcccc
Q 014378 245 TGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASL 324 (426)
Q Consensus 245 ~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lGiafQI~DDllD~~g~~~~~ 324 (426)
.||.+|+.+.. ...++++|++|+++|||+||+++|++||+++|++++..+.+++||.+||+||||+||++|++++++.+
T Consensus 149 ~GQ~lDl~~~~-~~~~~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~ 227 (291)
T 3npk_A 149 IGQAIDCFFED-KRLSLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQS 227 (291)
T ss_dssp HHHHHHHHTTT-SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHhccC-CCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHH
Confidence 99999998865 35799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccchhccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 014378 325 GKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENND 404 (426)
Q Consensus 325 GK~~g~Dl~~Gk~TlPvl~Al~~~~~l~~~l~~~~~~~~~v~~~~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~ 404 (426)
|||.+.| +||+|||+++++ +.+...++++.++|.+.|+.|+..
T Consensus 228 GK~~~~d--~gK~T~p~l~~l---------------------------------~~a~~~~~~~~~~a~~~l~~~~~~-- 270 (291)
T 3npk_A 228 GKPTNND--IHKNSFVNLLGL---------------------------------EQAIKTKENLLNECEQDLEKLNEK-- 270 (291)
T ss_dssp ------------CCHHHHHCH---------------------------------HHHHHHHHHHHHHHHHHHHTSCHH--
T ss_pred CCccchh--cCcchHHHHHHH---------------------------------HHhHHHHHHHHHHHHHHHHHhchh--
Confidence 9999877 999999999965 556678888999999999998642
Q ss_pred cchHHHHHHHHHHHHHHHh
Q 014378 405 EDVTKSRRALLDLTHRVIT 423 (426)
Q Consensus 405 ~~~~~~~~~L~~l~~~v~~ 423 (426)
..+.|.+|+.+.++
T Consensus 271 -----~~~~l~~la~~~~~ 284 (291)
T 3npk_A 271 -----LAQMIQNLIIQYLE 284 (291)
T ss_dssp -----HHHHHHHHHHHHC-
T ss_pred -----HHHHHHHHHHHHHh
Confidence 35789999988764
No 40
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=100.00 E-value=4.7e-57 Score=444.80 Aligned_cols=269 Identities=31% Similarity=0.420 Sum_probs=233.4
Q ss_pred ccCchhhHHHHHHHHHHHHHHHhhhCc-hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHh
Q 014378 85 QLDPFSLVADELSILAKRLRSMVVAEV-PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATEL 163 (426)
Q Consensus 85 ~~~~~~~i~~eL~~v~~~l~~~~~~~~-~~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~~~~~~~ 163 (426)
..|+-..+.++++.|++.|++.+.... +.+.++++|.+..| |||+||.|++++++++|++.
T Consensus 10 ~~~~~~~~~~~~~~v~~~l~~~l~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~---------------- 71 (293)
T 2j1p_A 10 HTDPISYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAG--GKRVRPVLCIAACELVGGEE---------------- 71 (293)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHSCSCSSHHHHHHHHHHHTSC--CCCHHHHHHHHHHHHTTCCH----------------
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH----------------
Confidence 345566788889999999999887654 56999999999988 99999999999999987631
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCC--CCCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcCC-----CHHHHH--
Q 014378 164 RTRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK-----NTEVVT-- 234 (426)
Q Consensus 164 ~~~~~~lA~aiEliH~AsLIHDDI--iD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l~-----~~~v~~-- 234 (426)
+.++.+|+++||||+|||||||| ||+|++|||+||+|.+||++.|||+||||+++||+.+++.. +..+++
T Consensus 72 -~~~~~~A~avEliH~asLiHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~ 150 (293)
T 2j1p_A 72 -SLAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAV 150 (293)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHCCchhccCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHHhccccCChHHHHHHH
Confidence 25788999999999999999998 99999999999999999999999999999999999998753 233444
Q ss_pred -HHHHHH--HHHHHHHHHhhcccCC--CCCCHHHHHHHHHhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Q 014378 235 -LLATVV--EHLVTGETMQMTTSSD--QRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQ 309 (426)
Q Consensus 235 -~ls~~~--~~l~~Gq~~dl~~~~~--~~~s~~~Yl~ii~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lGiafQ 309 (426)
.+++++ ..+++||.+|+.+..+ ...++++|+.++++|||+||++||++|++++|++++..+.+++||.++|+|||
T Consensus 151 ~~l~~~~g~~~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lG~aFQ 230 (293)
T 2j1p_A 151 GELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQ 230 (293)
T ss_dssp HHHHHHHSTTTHHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhHHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 555554 5799999999988654 35688999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccCCccccCCCccchhccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHH
Q 014378 310 LIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHA 389 (426)
Q Consensus 310 I~DDllD~~g~~~~~GK~~g~Dl~~Gk~TlPvl~Al~~~~~l~~~l~~~~~~~~~v~~~~~li~~sg~i~~a~~~a~~~~ 389 (426)
|+||++|+++++ |.|+|+++ |+++|++.+++|.
T Consensus 231 I~DDiLD~~~~~--------------K~T~p~l~---------------------------------gle~a~~~a~~~~ 263 (293)
T 2j1p_A 231 VVDDILDVTKSS--------------KLTYPKLM---------------------------------GLEKSREFAEKLN 263 (293)
T ss_dssp HHHHHHHHHC----------------CCCHHHHH---------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHccCCc--------------cccHHHHH---------------------------------HHHHHHHHHHHHH
Confidence 999999999875 89999998 5689999999999
Q ss_pred HHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 014378 390 NLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 426 (426)
Q Consensus 390 ~~A~~~L~~lp~~~~~~~~~~~~~L~~l~~~v~~R~k 426 (426)
++|++.|+.|| ++ .++.|.+|++++++|++
T Consensus 264 ~~A~~~L~~l~-~~------~~~~L~~l~~~~~~R~~ 293 (293)
T 2j1p_A 264 TEARDQLLGFD-SD------KVAPLLALANYIANRQN 293 (293)
T ss_dssp HHHHHHTTTSC-TT------TTHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHhCC-cH------HHHHHHHHHHHHHhhcC
Confidence 99999999998 34 56889999999999975
No 41
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=100.00 E-value=5.7e-58 Score=464.53 Aligned_cols=288 Identities=15% Similarity=0.161 Sum_probs=237.7
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 014378 113 KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDAD 192 (426)
Q Consensus 113 ~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~AsLIHDDIiD~s~ 192 (426)
++.++++|.+. | |||+||+|++++++++++.... ..+.++.+|++|||||+||||||||||+|+
T Consensus 59 ~~~~~l~Y~~~-G--GKrlRp~l~~~~~~~~~~~~~~-------------~~e~~~~la~aiEliH~asLiHDDimD~s~ 122 (368)
T 2q58_A 59 YYLNCIDYNVK-K--GKHIRGKILVLISSLSSAYSNI-------------KRDSIYLLGWVVEAIQALILIADDIMDSGK 122 (368)
T ss_dssp HHHHHHHHHTT-C--STTTTTC-CHHHHTTTTCCCSS-------------SHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhcCCC-C--ccchhHHHHHHHHHHhCCCccC-------------CHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Confidence 47788999884 8 9999999999999999875321 124678899999999999999999999999
Q ss_pred CCCCCCccccccChhHHHHHHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHHHHHhhcccC--CCCCCHHH
Q 014378 193 TRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-------TEVVTLLATVVEHLVTGETMQMTTSS--DQRCSMDY 263 (426)
Q Consensus 193 ~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l~~-------~~v~~~ls~~~~~l~~Gq~~dl~~~~--~~~~s~~~ 263 (426)
+|||+||+|++||++.|||+||+|++.|+.++.++.+ .++++++++++..++.||.+|+.+.. +...+.++
T Consensus 123 ~RRG~pt~h~~~G~~~AIl~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~e~ 202 (368)
T 2q58_A 123 FRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESIFFTVLGQHLDLSYFDLSKADKISER 202 (368)
T ss_dssp EETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHH
T ss_pred CCCCCCccccCcchhhHHHHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccCCchHHH
Confidence 9999999999999999999999999999999987653 36889999999999999999997653 34567899
Q ss_pred HHHHHHhhhhhH-HHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHhhhhhcccccCCccccCCCccchhccCcccHH
Q 014378 264 YMQKTYYKTASL-ISNSCKAIALLAG--QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAP 340 (426)
Q Consensus 264 Yl~ii~~KTasL-~~~a~~~ga~lag--~~~~~~~~l~~~G~~lGiafQI~DDllD~~g~~~~~GK~~g~Dl~~Gk~TlP 340 (426)
|++++.+|||.| |.+||.+|++++| ++++..+.++.||.+||+||||+||++||++ |||.|+||++||+|||
T Consensus 203 y~~ii~~KTa~l~~~~~~~~g~~~ag~~~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~-----gK~~g~Dl~egK~T~p 277 (368)
T 2q58_A 203 YFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYLF-----NDSNADDICRFKLTWP 277 (368)
T ss_dssp HHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHHS-----CCCSSCTTTSCCCCHH
T ss_pred HHHHHHHHhccccchHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccc-----CCCCCchHhcCCcHHH
Confidence 999999999999 7999999999998 4667788899999999999999999999985 8999999999999999
Q ss_pred HHHHhhhC-chHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHH
Q 014378 341 ILFAMEEF-PQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTH 419 (426)
Q Consensus 341 vl~Al~~~-~~l~~~l~~~~~~~~~v~~~~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~~~~L~~l~~ 419 (426)
+++|++.. ++.+..+.+.+.... ..+.+++...+..+.+.+.++++.+++.+.|+.+|+.... ...+..|..+++
T Consensus 278 ~i~al~~~~~~~r~~L~~~~~~~~--~~vk~l~~~l~~~~~~~ey~~~~~~~~~~~i~~l~~~~~k--~~l~~ll~kI~~ 353 (368)
T 2q58_A 278 LQKSFEIADEEMKLKISENYGKNS--SLVKDCYNLLKINEHYLEYQRNALDYLIKLVKDITDDSLQ--KVFIHLIHQISE 353 (368)
T ss_dssp HHSSTTTCCHHHHHHHHHHTTTCH--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCSCHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHhCCCH--HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccchhHH--HHHHHHHHHHHH
Confidence 99999975 567777766654322 2334444555666777888889999999999999987611 113344556666
Q ss_pred HHHhcc
Q 014378 420 RVITRN 425 (426)
Q Consensus 420 ~v~~R~ 425 (426)
++++|+
T Consensus 354 ~~~~rk 359 (368)
T 2q58_A 354 LITNSR 359 (368)
T ss_dssp HHCC--
T ss_pred HHHHhh
Confidence 777765
No 42
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=100.00 E-value=2.1e-57 Score=446.08 Aligned_cols=265 Identities=21% Similarity=0.258 Sum_probs=233.9
Q ss_pred hhHHHHHHHHHHHHHHHhhh-CchHHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHH
Q 014378 90 SLVADELSILAKRLRSMVVA-EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQ 168 (426)
Q Consensus 90 ~~i~~eL~~v~~~l~~~~~~-~~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~ 168 (426)
+.+.+-.+.|++.|.+.+.. .++.+.++++|++. | |||+||.|++++++++|++.. .+.
T Consensus 13 ~~~~~~~~~v~~~l~~~l~~~~~~~l~~~~~y~~~-g--GKrlRp~L~l~~~~~~g~~~~-----------------~~~ 72 (289)
T 2azj_A 13 EFWLEAKATIDRLIEQFLNSNRDWDLVDISSYILK-D--GKRFRGTLNMFFTVALGGDIK-----------------DSY 72 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSCTTHHHHHHHHHS-C--CCCHHHHHHHHHHHHTTCCGG-----------------GGH
T ss_pred HHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHhc-C--CCcHHHHHHHHHHHHhCCCHH-----------------HHH
Confidence 34444456688888888765 46779999999998 9 999999999999999986421 467
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHH
Q 014378 169 CIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVAL-ASLKNTEVVTLLATVVEHLVTGE 247 (426)
Q Consensus 169 ~lA~aiEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~l-a~l~~~~v~~~ls~~~~~l~~Gq 247 (426)
.+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++||+.+ ++.+ +++++.+++++..+++||
T Consensus 73 ~~A~avEliH~asLIHDDi~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~-~~~~~~~~~~~~~~~~GQ 151 (289)
T 2azj_A 73 GGALAIEILHSASLALCDIVDLDATRRGDKAAWVVYGNRKVIFITNYLIPTALRIIQTSYG-DDALNTSIELWKDTSVGA 151 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCBSSSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999 8875 589999999999999999
Q ss_pred HHhhcccCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccCCccccCCC
Q 014378 248 TMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKG 327 (426)
Q Consensus 248 ~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lGiafQI~DDllD~~g~~~~~GK~ 327 (426)
++|+.+ +++|++++++|||+||++||++|++++ ++++..+.+++||.++|+||||+||++|++++ ||+
T Consensus 152 ~~dl~~-------~~~y~~~i~~KTa~L~~~a~~~ga~la-~~~~~~~~l~~~g~~lG~aFQi~DDilD~~~~----~K~ 219 (289)
T 2azj_A 152 LRDMYD-------NSDYIRTIELKTGSLFKLSTVLSAYAS-KHYNTKQQMLDVGKYLGIIYQVIDDFVDYKTK----KVE 219 (289)
T ss_dssp HHTTTT-------TSCHHHHHHHHTHHHHHHHHHHHHHHT-TCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTS----CTT
T ss_pred HHHHhh-------HHHHHHHHHcchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC----CCh
Confidence 999975 578999999999999999999999999 88889999999999999999999999999996 565
Q ss_pred ccchhccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCC-CCCcc
Q 014378 328 SLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPE-NNDED 406 (426)
Q Consensus 328 ~g~Dl~~Gk~TlPvl~Al~~~~~l~~~l~~~~~~~~~v~~~~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~-~~~~~ 406 (426)
|+++||.|+|+++ +... . +.+ .+.++++|.++|++.|+.||+ ++
T Consensus 220 ---dl~~gk~Tlp~l~--~~~g-~--------------~~a------------~~~~a~~~~~~A~~~L~~lp~~~~--- 264 (289)
T 2azj_A 220 ---EIDGSAKQLFKYY--REGK-L--------------EEY------------VRSVYLEYKQKYDELISNIPFQSK--- 264 (289)
T ss_dssp ---TCCTTGGGGHHHH--TTTC-H--------------HHH------------HHHHHHHHHHHHHHHHHTSCCCGG---
T ss_pred ---hhhcCcccHHHHH--HcCC-H--------------HHH------------HHHHHHHHHHHHHHHHHhCCCCcH---
Confidence 8999999999999 2211 0 000 135999999999999999998 66
Q ss_pred hHHHHHHHHHHHHHHHhcc
Q 014378 407 VTKSRRALLDLTHRVITRN 425 (426)
Q Consensus 407 ~~~~~~~L~~l~~~v~~R~ 425 (426)
.++.|.+|++++++|.
T Consensus 265 ---~~~~L~~l~~~~~~R~ 280 (289)
T 2azj_A 265 ---YLSEIRSLPEFLANGL 280 (289)
T ss_dssp ---GHHHHHTHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHhcc
Confidence 7899999999999985
No 43
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=100.00 E-value=5.7e-53 Score=412.17 Aligned_cols=223 Identities=29% Similarity=0.381 Sum_probs=196.0
Q ss_pred ccCchhhHHHHHHHHHHHHHHHhhhC-chHHHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHh
Q 014378 85 QLDPFSLVADELSILAKRLRSMVVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATEL 163 (426)
Q Consensus 85 ~~~~~~~i~~eL~~v~~~l~~~~~~~-~~~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~~~~~~~ 163 (426)
+......+.++++.|++.|++.+.+. +|.+.++++|++..| |||+||.|++++++++|+... .
T Consensus 3 ~~~l~~~i~~~l~~ve~~L~~~l~~~~~~~l~~~~~y~~~~g--GKrlRp~Lvll~~~~~g~~~~--------------~ 66 (285)
T 4fp4_A 3 MYSLPPEVLAALERVKARLNKVGEELEPISLRKAVRHYIETP--GKLLRPLLLLTFTYSIDRRSI--------------M 66 (285)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTTTTTCSSHHHHHHHHHHHHSC--CCCHHHHHHHHHHHHHCGGGG--------------G
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCCC--------------C
Confidence 44556789999999999999999987 889999999999988 999999999999999986210 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 014378 164 RTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHL 243 (426)
Q Consensus 164 ~~~~~~lA~aiEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l~~~~v~~~ls~~~~~l 243 (426)
.+.+..+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++|++.+++.+ +++++.+++++..+
T Consensus 67 ~~~~~~~A~aiEliH~aSLIHDDImD~s~~RRG~Pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~-~~~~~~ls~~~~~~ 145 (285)
T 4fp4_A 67 DPRILEAAAIVELLHVVSLLQDDVMDQHDQRRGIKTPRAMYGDGRAIVASDWLIAESIKMAVNLG-ADVVTYLADVAQRL 145 (285)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTCSBSSSSBCHHHHHCHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCcHHHhcChHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHH
Confidence 13788999999999999999999999999999999999999999999999999999999999986 49999999999999
Q ss_pred HHHHHHhhcccCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccCCccc
Q 014378 244 VTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSAS 323 (426)
Q Consensus 244 ~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lGiafQI~DDllD~~g~~~~ 323 (426)
+.||.+|+.+..+. ++++|||+||++||++|++++|++ +..+.+++||.++|+||||+||++||+++++
T Consensus 146 ~~GQ~lDl~~~~~~---------~i~~KTg~Lf~~a~~lGa~lag~~-~~~~~l~~~G~~lGlAFQI~DDiLD~~~d~~- 214 (285)
T 4fp4_A 146 SVGQALDLEGERDK---------AAEFKTAPLIEAALVMPLVILGRR-ELIETAKKLGTKLGILYQYSDDYSDENVERP- 214 (285)
T ss_dssp HHHHHHHHTTCHHH---------HHHHHTHHHHHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHTTCC---------CH-
T ss_pred HHhHHHHHhccccc---------hhhcCcHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcc-
Confidence 99999999885431 999999999999999999999999 8889999999999999999999999999876
Q ss_pred cCCCccchhccC
Q 014378 324 LGKGSLSDIRHG 335 (426)
Q Consensus 324 ~GK~~g~Dl~~G 335 (426)
.||+.|+||+++
T Consensus 215 ~~k~~g~DI~e~ 226 (285)
T 4fp4_A 215 ETKSIANEIGRY 226 (285)
T ss_dssp HHHHHHHHHHHH
T ss_pred ccCccHHHHHHH
Confidence 578899999998
No 44
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=100.00 E-value=2.9e-48 Score=378.60 Aligned_cols=202 Identities=13% Similarity=0.165 Sum_probs=179.0
Q ss_pred HHHHHHHHHHHHHHhhhCchH-HHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHH
Q 014378 93 ADELSILAKRLRSMVVAEVPK-LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 171 (426)
Q Consensus 93 ~~eL~~v~~~l~~~~~~~~~~-l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~lA 171 (426)
+.--+.|++.|.+.+....|. +.++++|++..| |||+||.|++++++++|++.. .+..+|
T Consensus 6 ~~~~~~ie~~L~~~l~~~~p~~l~~~~~y~~~~g--GKrlRP~L~l~~~~~~g~~~~-----------------~~~~~A 66 (274)
T 3kra_B 6 AAIEADIERYLKKSITIRPPETVFGPMHHLTFAA--PATAASTLCLAACELVGGDRS-----------------QAMAAA 66 (274)
T ss_dssp HHHHHHHHHHHHHHCCCCSSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHTTCCGG-----------------GGHHHH
T ss_pred HHHHHHHHHHHHHHcccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------HHHHHH
Confidence 333455788888888877775 999999999989 999999999999999987532 567899
Q ss_pred HHHHHHHHHHHhhcCCC-CCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcCCCH-------HHHHH---HHHHH
Q 014378 172 EITEMIHVASLLHDDVL-DDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNT-------EVVTL---LATVV 240 (426)
Q Consensus 172 ~aiEliH~AsLIHDDIi-D~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l~~~-------~v~~~---ls~~~ 240 (426)
+++||||+||||||||+ |++++|||+||+|++||+++|||+||||+++||+.+++..++ .+++. +++++
T Consensus 67 ~aiEliH~aSLIHDDI~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~~l~~a~ 146 (274)
T 3kra_B 67 AAIHLVHAAAYVHEHLPLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRAG 146 (274)
T ss_dssp HHHHHHHHHHHHHHTCCCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCcccCCccCCCCCCchhhcChHHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHH
Confidence 99999999999999998 777789999999999999999999999999999999987653 34444 45554
Q ss_pred --HHHHHHHHHhhcccCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhc
Q 014378 241 --EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDV 314 (426)
Q Consensus 241 --~~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lGiafQI~DDl 314 (426)
..++.||.+|+.+..+ ..++++|++|+++|||+||++||++|++++|++++.++.+++||++||+||||+||.
T Consensus 147 G~~~~~~GQ~lDl~~~~~-~~t~~~y~~~i~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lG~aFQI~DD~ 221 (274)
T 3kra_B 147 GPEGMISGLHREEEIVDG-NTSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMK 221 (274)
T ss_dssp STTTHHHHHHHHTTCCTT-SSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHhHHHHHhccCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6789999999998765 689999999999999999999999999999999999999999999999999999997
No 45
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=100.00 E-value=8e-47 Score=368.34 Aligned_cols=196 Identities=12% Similarity=0.156 Sum_probs=170.7
Q ss_pred HHHHHHHHHHhhhCchH-HHHHHHHHHhcCCCCCCchHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHHHH
Q 014378 97 SILAKRLRSMVVAEVPK-LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITE 175 (426)
Q Consensus 97 ~~v~~~l~~~~~~~~~~-l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiE 175 (426)
..|++.|.+.+....|. +.++++|++..| |||+||.|++++++++|++.. .+..+|+++|
T Consensus 15 ~~i~~~L~~~~~~~~p~~l~~~~~y~~~~g--GKrlRP~L~l~~~~~~g~~~~-----------------~~~~~A~aiE 75 (273)
T 3qkc_B 15 SDIESYLKKAIPIRAPESVFEPMHHLTFAA--PRTSASALCVAACELVGGDRS-----------------DAMAAAAAVH 75 (273)
T ss_dssp HHHHHHHHHHSCCCCSSTTHHHHHHHHHHS--CCCHHHHHHHHHHHHTTCCGG-----------------GTHHHHHHHH
T ss_pred HHHHHHHHHhcccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------HHHHHHHHHH
Confidence 45678888888766664 999999999989 999999999999999987532 5688999999
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcCCC------HHHHHHH---HHHH--HHHH
Q 014378 176 MIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN------TEVVTLL---ATVV--EHLV 244 (426)
Q Consensus 176 liH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l~~------~~v~~~l---s~~~--~~l~ 244 (426)
|||+||||||||+|+|+ |||+||+|++||++.|||+||||+++||+.+++..+ ..+++.+ ++++ ..++
T Consensus 76 liH~aSLIHDDI~D~d~-RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~l~~a~g~~~~~ 154 (273)
T 3qkc_B 76 LMHVAAYTHENLPLTDG-PMSKSEIQHKFDPNIELLTGDGIIPFGLELMARSMDPTRNNPDRILRAIIELTRVMGSEGIV 154 (273)
T ss_dssp HHHHHHHHHHSCCBTTB-CSSSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHcCcccCcc-CCCCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHhchhHHH
Confidence 99999999999999998 999999999999999999999999999999987553 3445554 4444 6789
Q ss_pred HHHHHhhcccCCCCCCHHHHHH-HHHhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcc
Q 014378 245 TGETMQMTTSSDQRCSMDYYMQ-KTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVL 315 (426)
Q Consensus 245 ~Gq~~dl~~~~~~~~s~~~Yl~-ii~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lGiafQI~DDll 315 (426)
.||.+|+.+.. ..+. +|++ ++++|||+||++||++||+++|++++..+.+++||.+||+||||+||++
T Consensus 155 ~GQ~lDl~~~~--~~~~-eyl~~I~~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lGlaFQI~DD~~ 223 (273)
T 3qkc_B 155 EGQYHELGLNQ--LNDL-ELIEYVCKKKEGTLHACGAACGAILGGCDEDKIEKLRRFGLYVGTVQGLLGKNR 223 (273)
T ss_dssp HHHHHHTTCCS--SCCH-HHHHHHHHHTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhcCC--CCCH-HHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999998842 3454 5665 6699999999999999999999999999999999999999999999996
No 46
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=96.64 E-value=0.18 Score=48.74 Aligned_cols=132 Identities=11% Similarity=0.011 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhhcccCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccC
Q 014378 240 VEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTG 319 (426)
Q Consensus 240 ~~~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lGiafQI~DDllD~~g 319 (426)
+..+..|..+|+... ...|++++..-+++-.|+...+.+. +++..+++ ...++.++|+|||+.|=+.|+
T Consensus 106 ~~~li~g~~~Dl~~~--~~~t~~dL~~Y~~~vAg~VG~m~~~---i~g~~~~~----~~~~A~~lG~AlQltNilRDv-- 174 (294)
T 4hd1_A 106 FLRLIEANRRDQRKH--TYDTWEDLRDYCRYSADPVGRLVLG---IFGCLDDE----RARLSDATCTALQVANHMQDI-- 174 (294)
T ss_dssp HHHHHHHHHHHHHCS--BCCSHHHHHHHHHHHTHHHHHHHHH---HTTCCSHH----HHHHHHHHHHHHHHHHHHHTH--
T ss_pred HHHHHHHHHhccccC--CCCCHHHHHHHHHhccchHHHHHHH---HhCCCCHH----HHHHHHHHHHHHHHHHHHHhc--
Confidence 567889999998764 2457777777666555554444333 34444544 345788999999999988886
Q ss_pred CccccCCCccchhccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccC
Q 014378 320 TSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSL 399 (426)
Q Consensus 320 ~~~~~GK~~g~Dl~~Gk~TlPvl~Al~~~~~l~~~l~~~~~~~~~v~~~~~li~~sg~i~~a~~~a~~~~~~A~~~L~~l 399 (426)
+.|+..|++-+|.=..-+.+-...++.. ...+ +.+..+ +..-...++.|.++|...+..+
T Consensus 175 ---------~eD~~~gR~YlP~~~l~~~gv~~~dl~~-~~~~-~~~~~~---------~~~~~~~A~~~~~~a~~~~~~l 234 (294)
T 4hd1_A 175 ---------DRDLALGRIYVPRADLEQFGATLDDIRA-RRAT-DGVRRC---------IALEVDRAQALFDEGRRLESLV 234 (294)
T ss_dssp ---------HHHHHTTCBCSCHHHHHTTTCCHHHHHT-TCCC-HHHHHH---------HHHHHHHHHHHHHHHGGGGGSS
T ss_pred ---------hhhhccCceeCCHHHHHHcCCCHHHHhc-CCCC-HHHHHH---------HHHHHHHHHHHHHHHHHHHHhC
Confidence 4678889998887554332212222222 2112 222222 2333466788888888888888
Q ss_pred CCC
Q 014378 400 PEN 402 (426)
Q Consensus 400 p~~ 402 (426)
|..
T Consensus 235 p~~ 237 (294)
T 4hd1_A 235 PPR 237 (294)
T ss_dssp CHH
T ss_pred CHH
Confidence 754
No 47
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=95.01 E-value=0.22 Score=49.35 Aligned_cols=146 Identities=14% Similarity=0.110 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhh
Q 014378 231 EVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQL 310 (426)
Q Consensus 231 ~v~~~ls~~~~~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lGiafQI 310 (426)
.+..++.+.+..+..|-.+++.. ...|++++..-+++-.|+...+.+.+-..-...++. .......+.++|.|||+
T Consensus 111 ~~~~~i~~~~~~m~~gm~~dl~~---~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~~~~~~-~~~~~~~A~~lG~AlQl 186 (343)
T 3vj8_A 111 KYQTVIADICRRMGIGMAEFLDK---HVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPL-VGEDTERANSMGLFLQK 186 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGC---CCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSSCHH-HHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccC---CCCCHHHHHHHHHhCcHHHHHHHHHHhCCCCCccch-hhhHHHHHHHHHHHHHH
Confidence 34456667777888888888752 345888888877777777666666654433222332 33456789999999999
Q ss_pred hhhcccccCCccccCCCccchhccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHH
Q 014378 311 IDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHAN 390 (426)
Q Consensus 311 ~DDllD~~g~~~~~GK~~g~Dl~~Gk~TlPvl~Al~~~~~l~~~l~~~~~~~~~v~~~~~li~~sg~i~~a~~~a~~~~~ 390 (426)
.|=+.|+ +.|+..|++-+|.=..-+..-...++. .+..-..+.. .+..-...++.|.+
T Consensus 187 tNilRDv-----------~eD~~~gR~YlP~e~l~~~g~~~~dl~-----~~~~~~~~~~------~l~~l~~~A~~~~~ 244 (343)
T 3vj8_A 187 TNIIRDY-----------LEDQQGGREFWPQEVWSRYVKKLGDFA-----KPENIDLAVQ------CLNELITNALHHIP 244 (343)
T ss_dssp HHHHHTH-----------HHHHHTTCCCSCHHHHTTTCSSGGGGG-----SGGGHHHHHH------HHHHHHHHHHTTHH
T ss_pred HHHHHHh-----------HHHHhCCCeeCCHHHHHHcCCCHHHHh-----cccCCHHHHH------HHHHHHHHHHHHHH
Confidence 9988776 567888998888744322110001111 1111122222 23444567788888
Q ss_pred HHHHHhccCCCC
Q 014378 391 LAAAAIDSLPEN 402 (426)
Q Consensus 391 ~A~~~L~~lp~~ 402 (426)
+|...+..+|+.
T Consensus 245 ~a~~~~~~L~~~ 256 (343)
T 3vj8_A 245 DVITYLSRLRNQ 256 (343)
T ss_dssp HHHHHHHTCCCH
T ss_pred HHHHHHHhCCcc
Confidence 888888888764
No 48
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=94.74 E-value=0.41 Score=46.02 Aligned_cols=136 Identities=13% Similarity=0.013 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 014378 238 TVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDF 317 (426)
Q Consensus 238 ~~~~~l~~Gq~~dl~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lGiafQI~DDllD~ 317 (426)
..+..+..|..+|+... ...|++++..-+++-.|+...+.+.+ ++..+. +.....+.++|.|+|+.|=+.|+
T Consensus 108 ~~~~~li~g~~~Dl~~~--~~~t~~dL~~Yc~~vAg~VG~l~~~l---~g~~~~---~~~~~~A~~lG~AlQltNilRDv 179 (293)
T 3acx_A 108 QSFYNLIDTVYKDQHFT--MFETDAELFGYCYGVAGTVGEVLTPI---LSDHET---HQTYDVARRLGESLQLINILRDV 179 (293)
T ss_dssp HHHHHHHHHHHHHTTCC--CCSSHHHHHHHHHHHTHHHHHHHHHH---HCSSCC---HHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHcCCC--CCCCHHHHHHHHHHhhHHHHHHHHHH---hCCCCc---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577788888888753 23578888877777666665555543 333331 23567899999999999977776
Q ss_pred cCCccccCCCccchhccCcccHHHHHHhhhCchHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc
Q 014378 318 TGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAID 397 (426)
Q Consensus 318 ~g~~~~~GK~~g~Dl~~Gk~TlPvl~Al~~~~~l~~~l~~~~~~~~~v~~~~~li~~sg~i~~a~~~a~~~~~~A~~~L~ 397 (426)
+.|+..|++-+|.=..-+..-...++.... .+ ..+.. .+..-...++.|..+|...+.
T Consensus 180 -----------~eD~~~gR~YLP~d~l~~~gv~~e~l~~~~-~~-~~~~~---------~~~~l~~~A~~~~~~a~~~~~ 237 (293)
T 3acx_A 180 -----------GEDFENERIYFSKQRLKQYEVDIAEVYQNG-VN-NHYID---------LWEYYAAIAEKDFRDVMDQIK 237 (293)
T ss_dssp -----------HHHHHTTCCCSCHHHHHHHTCCHHHHHHHC-CC-HHHHH---------HHHHHHHHHHHHHHHHHHTGG
T ss_pred -----------HHHHhCCcEEeCHHHHHHcCCCHHHhcccC-CC-HHHHH---------HHHHHHHHHHHHHHHHHHhHH
Confidence 567888999998754333221222233221 12 22222 234445778899999999999
Q ss_pred cCCCCC
Q 014378 398 SLPENN 403 (426)
Q Consensus 398 ~lp~~~ 403 (426)
.+|...
T Consensus 238 ~lp~~~ 243 (293)
T 3acx_A 238 VFSIEA 243 (293)
T ss_dssp GSCTTH
T ss_pred hCCHHH
Confidence 998753
No 49
>3aqb_A Component A of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_A*
Probab=82.63 E-value=2.4 Score=36.20 Aligned_cols=45 Identities=18% Similarity=0.100 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcc
Q 014378 209 AVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTT 253 (426)
Q Consensus 209 AVlaGD~Lla~a~~~la~l~~~~v~~~ls~~~~~l~~Gq~~dl~~ 253 (426)
-||+|||+-+..+.+|+..+....+..+++++..+.+.-..-++-
T Consensus 72 iVLaGD~~Sa~fY~lLa~~~~~~~i~~lS~aI~eVNE~K~sl~~~ 116 (147)
T 3aqb_A 72 FVLSTDVLSALFYKYLSQPFYQHDFLVLTDCVSRINELKSIRATI 116 (147)
T ss_dssp HHHHHHHHHHHHHHHTBTTBCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred eEeehHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 559999999999999999999999999999999998887665543
No 50
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=79.83 E-value=49 Score=32.53 Aligned_cols=94 Identities=6% Similarity=-0.069 Sum_probs=62.4
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhhcccC-CCCCCHHHHHHHHHhhhhhHHHHH-HHHHHHHcCCCHHHHH--HHHHHH
Q 014378 226 SLKNTEVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNS-CKAIALLAGQTAEVAI--LAFDYG 301 (426)
Q Consensus 226 ~l~~~~v~~~ls~~~~~l~~Gq~~dl~~~~-~~~~s~~~Yl~ii~~KTasL~~~a-~~~ga~lag~~~~~~~--~l~~~G 301 (426)
....+.....+.+.+..++.+-..+..+.. ....++++|+++-..-+|..+..+ +..+ .--..+++..+ .+.++-
T Consensus 172 ~~~~~~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~~~~~~l~~~~-~g~~l~~~~~~~p~~~~l~ 250 (382)
T 3kb9_A 172 AFLPATWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPS-SGCELPDAVRKHPAYRRAA 250 (382)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHHHHHHHH-HTCCCCHHHHTSHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCHHHHHHHHHHH-cCCCCCHHHHhChHHHHHH
Confidence 333567788899999999999988887753 335799999998555444433222 1221 11123444332 456677
Q ss_pred HHHHHHHhhhhhcccccCC
Q 014378 302 KNLGLAYQLIDDVLDFTGT 320 (426)
Q Consensus 302 ~~lGiafQI~DDllD~~g~ 320 (426)
+..+...-+.||+..|..+
T Consensus 251 ~~~~~i~rL~NDi~S~~kE 269 (382)
T 3kb9_A 251 LLSQEFAAWYNDLCSLPKE 269 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8889999999999998654
No 51
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=75.88 E-value=42 Score=33.91 Aligned_cols=96 Identities=9% Similarity=-0.028 Sum_probs=63.0
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccC-CCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHcC--CCHHHHH--H
Q 014378 222 VALASLKNTEVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLAG--QTAEVAI--L 296 (426)
Q Consensus 222 ~~la~l~~~~v~~~ls~~~~~l~~Gq~~dl~~~~-~~~~s~~~Yl~ii~~KTasL~~~a~~~ga~lag--~~~~~~~--~ 296 (426)
..+.+...+.....+.+.+..++.+-+.+..|.. ....++++|+++ +..||.....++ .....| .++++.+ .
T Consensus 246 ~~l~~~a~~~q~~r~~~~~~~~~~a~l~EA~W~~~g~vPsleEYl~~-R~~sg~~p~~~l--~e~~~g~~lp~~v~~~p~ 322 (433)
T 3v1v_A 246 GYFVRAATPSQSDRYRHDMARLHLGYLAEGAWAQTGHVPEVWEYLAM-RQFNNFRPCPTI--TDTVGGYELPADLHARPD 322 (433)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH-HHHSSSTTTGGG--HHHHHTCCCCHHHHTSHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH-HHHHhHHHHHHH--HHHHcCCCCCHHHHhCch
Confidence 3444444567788888889999999888877743 335699999996 445654322211 112223 2444433 4
Q ss_pred HHHHHHHHHHHHhhhhhcccccCC
Q 014378 297 AFDYGKNLGLAYQLIDDVLDFTGT 320 (426)
Q Consensus 297 l~~~G~~lGiafQI~DDllD~~g~ 320 (426)
+.++-+..+...-+.||+..|..+
T Consensus 323 ~~~L~~~~~~i~rL~NDI~Sy~kE 346 (433)
T 3v1v_A 323 MQRVIALAGNATTIVNDLYSYTKE 346 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHHHHHHhchHHHHHHH
Confidence 566778888889999999999754
No 52
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=63.93 E-value=1.3e+02 Score=31.47 Aligned_cols=91 Identities=11% Similarity=0.022 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhcccC-CCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHcC--CCHHHHHHH---HHHH
Q 014378 228 KNTEVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLAG--QTAEVAILA---FDYG 301 (426)
Q Consensus 228 ~~~~v~~~ls~~~~~l~~Gq~~dl~~~~-~~~~s~~~Yl~ii~~KTasL~~~a~~~ga~lag--~~~~~~~~l---~~~G 301 (426)
+...++..+-+++..++.+-+.+..|.. ...+|.++|++...--+|.-+...... ...| .+.+..+.+ .++-
T Consensus 363 ~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~--~~mg~~lt~e~~e~~~~~p~i~ 440 (554)
T 3g4d_A 363 GRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSF--VGMGDIVTPETFKWAASDPKII 440 (554)
T ss_dssp TCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHH--HTSCTTSCHHHHHHHHTCCHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHHHHH--HhcCCCCCHHHHHhccccHHHH
Confidence 3346788888999999999999888854 345799999997555444432221111 1123 456655543 3677
Q ss_pred HHHHHHHhhhhhcccccCC
Q 014378 302 KNLGLAYQLIDDVLDFTGT 320 (426)
Q Consensus 302 ~~lGiafQI~DDllD~~g~ 320 (426)
+..+...-+.||+..+..+
T Consensus 441 ~~~~~I~RL~NDI~S~k~E 459 (554)
T 3g4d_A 441 QASTIICRFMDDVAEHKFK 459 (554)
T ss_dssp HHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHhcccchhhhh
Confidence 8889999999999998654
No 53
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=56.23 E-value=91 Score=32.56 Aligned_cols=88 Identities=9% Similarity=0.053 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccC-CCCCCHHHHHHHHHhhhhhHHHH-HHHHHHHHcC-CCHHHHHHH---HHHHHHH
Q 014378 231 EVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISN-SCKAIALLAG-QTAEVAILA---FDYGKNL 304 (426)
Q Consensus 231 ~v~~~ls~~~~~l~~Gq~~dl~~~~-~~~~s~~~Yl~ii~~KTasL~~~-a~~~ga~lag-~~~~~~~~l---~~~G~~l 304 (426)
.++..+-+++..++.+-+.+..|.. ...+|.++|++...--+|.-+.. .+.++ ++. .+.+..+.+ -++-+..
T Consensus 364 ~~~~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~--mg~~lt~e~~e~~~~~p~i~~~~ 441 (555)
T 3n0f_A 364 NILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFA--VVQNIKKEEIENLQKYHDIISRP 441 (555)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHHHHHHHHH--HCSSCCHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHHHHHHHHHHh--cCCCCCHHHHHhcccchHHHHHH
Confidence 3667778888999999988888753 34579999999765554443222 11111 122 356655443 4667888
Q ss_pred HHHHhhhhhcccccCC
Q 014378 305 GLAYQLIDDVLDFTGT 320 (426)
Q Consensus 305 GiafQI~DDllD~~g~ 320 (426)
+...-+.||+..+..+
T Consensus 442 ~~i~RL~NDi~S~~~E 457 (555)
T 3n0f_A 442 SHIFRLCNDLASASAE 457 (555)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchhhhhh
Confidence 8899999999998644
No 54
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=55.87 E-value=1.6e+02 Score=30.65 Aligned_cols=91 Identities=11% Similarity=0.056 Sum_probs=61.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhcccC-CCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHc-C-CCHHHHHHH---HHH
Q 014378 227 LKNTEVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLA-G-QTAEVAILA---FDY 300 (426)
Q Consensus 227 l~~~~v~~~ls~~~~~l~~Gq~~dl~~~~-~~~~s~~~Yl~ii~~KTasL~~~a~~~ga~la-g-~~~~~~~~l---~~~ 300 (426)
.+...++..+-+++..++.+-+.+..|.. ...+|.++|++...--+|.....+.. .++ . .+.+..+.+ -++
T Consensus 358 ~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~---f~g~~~lt~e~~e~~~~~p~i 434 (550)
T 3m00_A 358 AGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTS---YLGMKSATEQDFEWLSKNPKI 434 (550)
T ss_dssp TTCGGGHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGSHHHHHHHH---HHTCTTCCHHHHHHHHTCCHH
T ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHH---HHcCCCCcHHHHHhhcccHHH
Confidence 33345778888999999999999888854 33579999999765555443222111 232 2 455555442 367
Q ss_pred HHHHHHHHhhhhhcccccCC
Q 014378 301 GKNLGLAYQLIDDVLDFTGT 320 (426)
Q Consensus 301 G~~lGiafQI~DDllD~~g~ 320 (426)
-+..+...-+.||+..+..+
T Consensus 435 ~~~~~~I~RL~NDI~S~k~E 454 (550)
T 3m00_A 435 LEASVIICRVIDDTATYEVE 454 (550)
T ss_dssp HHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHhhhheeeccchhHHHH
Confidence 78889999999999998644
No 55
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=51.54 E-value=1.3e+02 Score=28.67 Aligned_cols=46 Identities=24% Similarity=0.271 Sum_probs=31.3
Q ss_pred HcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccCCccccCCCccchhccCcccHHHHH
Q 014378 286 LAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 343 (426)
Q Consensus 286 lag~~~~~~~~l~~~G~~lGiafQI~DDllD~~g~~~~~GK~~g~Dl~~Gk~TlPvl~ 343 (426)
+.|.+.+....+...-+-|=.++-|.||+.| .+|+|.|++|+=..|
T Consensus 39 ~~~~~~~~~~~~A~avEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~ 84 (301)
T 2q80_A 39 WLKVPEDKLQIIIEVTEMLHNASLLIDDIED------------NSKLRRGFPVAHSIY 84 (301)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH------------TCSEETTEECHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHccccC------------CCCCCCCCcchhhcc
Confidence 3355555455566666777788899999976 245677888765544
No 56
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=50.87 E-value=75 Score=30.79 Aligned_cols=49 Identities=29% Similarity=0.247 Sum_probs=26.9
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccCCccccCCCccchhccCcccHHHHHH
Q 014378 284 ALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFA 344 (426)
Q Consensus 284 a~lag~~~~~~~~l~~~G~~lGiafQI~DDllD~~g~~~~~GK~~g~Dl~~Gk~TlPvl~A 344 (426)
+.+.|.+.+....+...-+-|=.++-|.||+.|= +|+|.|++|+-..|-
T Consensus 59 ~~~~g~~~~~~~~~A~aiEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~G 107 (334)
T 3rmg_A 59 ARLYGAVTPATLHAAVSLELLHTASLVHDDVVDE------------STERRGQLSVNAIFN 107 (334)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHC---------------------CHHHHHH
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHHHHHcCccCC------------CCCcCCCccHHHhcC
Confidence 3333444444445566677788899999999772 567888888776664
No 57
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=50.22 E-value=1.1e+02 Score=29.68 Aligned_cols=52 Identities=31% Similarity=0.221 Sum_probs=30.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccCCccccCCCccchhccCcccHHHHH
Q 014378 280 CKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 343 (426)
Q Consensus 280 ~~~ga~lag~~~~~~~~l~~~G~~lGiafQI~DDllD~~g~~~~~GK~~g~Dl~~Gk~TlPvl~ 343 (426)
|.+++.+.|.+.+....+...-+-|=.++-|.||+.|= +|+|.|++|+-..|
T Consensus 61 ~l~~~~~~g~~~~~~~~~A~aiEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~ 112 (341)
T 3mzv_A 61 TLAAARLVGYGGPFHVHLAATVEFIHTATLLHDDVVDE------------SRQRRGRPTANLLW 112 (341)
T ss_dssp HHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHHC------------------CTTSCCHHHHS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCccCC------------CCCcCCCccHHHhc
Confidence 34444444554444455666667788899999999772 45677777765554
No 58
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=45.98 E-value=2e+02 Score=29.72 Aligned_cols=89 Identities=12% Similarity=0.061 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCC-CCCHHHHHHHHHhhhhhHHHHHHHHHHHHcC-CCHHHHHH---HHHHHHHHH
Q 014378 231 EVVTLLATVVEHLVTGETMQMTTSSDQ-RCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAIL---AFDYGKNLG 305 (426)
Q Consensus 231 ~v~~~ls~~~~~l~~Gq~~dl~~~~~~-~~s~~~Yl~ii~~KTasL~~~a~~~ga~lag-~~~~~~~~---l~~~G~~lG 305 (426)
.++..+.+++..++.+-+.+..|.... .+|.++|++.-..-+|...-... .-..++. .+.+..+. .-++-+..+
T Consensus 355 ~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~-~~~~~g~~~t~e~~e~~~~~p~i~~~~~ 433 (543)
T 2ong_A 355 NVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTH-IFFRVTDSFTKETVDSLYKYHDLVRWSS 433 (543)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHH-HHHHHSSCCCHHHHHHHTTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHH-HHHHcCCCCCHHHHHHhcccHHHHHHHH
Confidence 366777888888998888887775443 46999999875444443222211 1112232 35554443 235667778
Q ss_pred HHHhhhhhcccccCC
Q 014378 306 LAYQLIDDVLDFTGT 320 (426)
Q Consensus 306 iafQI~DDllD~~g~ 320 (426)
+..-+.||+..+..+
T Consensus 434 ~i~RL~NDi~S~~~E 448 (543)
T 2ong_A 434 FVLRLADDLGTSVEE 448 (543)
T ss_dssp HHHHHHHHHHSSHHH
T ss_pred HHHHHhcccchhhhc
Confidence 888899999888644
No 59
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=45.12 E-value=35 Score=33.17 Aligned_cols=61 Identities=16% Similarity=0.160 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC------------CCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcCC
Q 014378 168 QCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK 228 (426)
Q Consensus 168 ~~lA~aiEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l~ 228 (426)
..+...-+.|=.|.-|.|||+| .++.+.|++|+-..+|...|--...-+..+|...|..++
T Consensus 234 ~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~ 306 (324)
T 3uca_A 234 KKLEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKCVNITEECIEILSSIK 306 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCC-----------------CHHHHHCHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3455566677788889999976 346788888998999999998888888999998888876
No 60
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=44.94 E-value=1e+02 Score=29.31 Aligned_cols=42 Identities=29% Similarity=0.295 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhcccccCCccccCCCccchhccCcccHHHHH
Q 014378 290 TAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 343 (426)
Q Consensus 290 ~~~~~~~l~~~G~~lGiafQI~DDllD~~g~~~~~GK~~g~Dl~~Gk~TlPvl~ 343 (426)
+.+....+...-+-|=.+.-|.||+.| .+|+|.|++|+-..|
T Consensus 66 ~~~~~~~~A~aiEliH~aSLIHDDImD------------~s~~RRG~Pt~h~~~ 107 (285)
T 4fp4_A 66 MDPRILEAAAIVELLHVVSLLQDDVMD------------QHDQRRGIKTPRAMY 107 (285)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHT------------TCSBSSSSBCHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHCCCCC------------CCCCCCCCCcHHHhc
Confidence 334444556666778889999999976 245677888876655
No 61
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=44.62 E-value=67 Score=31.43 Aligned_cols=52 Identities=19% Similarity=0.031 Sum_probs=34.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccCCccccCCCccchhccCcccHHHHH
Q 014378 280 CKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 343 (426)
Q Consensus 280 ~~~ga~lag~~~~~~~~l~~~G~~lGiafQI~DDllD~~g~~~~~GK~~g~Dl~~Gk~TlPvl~ 343 (426)
|.+++.+.|.+.+....+...-+-|=.++-|.||+.|= +|+|.|++|+-..|
T Consensus 62 ~ll~~~~~g~~~~~~~~~A~avEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~ 113 (352)
T 3nf2_A 62 AVLSAEVTGAAPEVGVPGAVAVELVHNFSLLHDDLMDG------------DEQRRHRDTVWKVH 113 (352)
T ss_dssp HHHHHHTTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHT------------CCEETTEECHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC------------CCCCCCCccHHHhc
Confidence 33444555555554555666667788889999999872 45677888865554
No 62
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=43.59 E-value=24 Score=33.89 Aligned_cols=79 Identities=27% Similarity=0.268 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC------------CCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcCCC-HHHHH
Q 014378 168 QCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-TEVVT 234 (426)
Q Consensus 168 ~~lA~aiEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l~~-~~v~~ 234 (426)
..+...-+.|=.|.-|.|||+| .++.+.|++|+=..+|...|--...-++..|...|..++. .+.+.
T Consensus 206 ~~l~~~g~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~~~~L~ 285 (304)
T 3lsn_A 206 KALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELRDQALHALRPFDAAAEPLR 285 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHHHHHHHHHHTTTSCGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHH
Confidence 3455566677788899999987 5788999999999999999999999999999999988763 23333
Q ss_pred HHH-HHHHHHHHH
Q 014378 235 LLA-TVVEHLVTG 246 (426)
Q Consensus 235 ~ls-~~~~~l~~G 246 (426)
.++ ..+.+..+|
T Consensus 286 ~l~~~~~~R~~~~ 298 (304)
T 3lsn_A 286 ELARYIVERRSEG 298 (304)
T ss_dssp HHHHHHHC-----
T ss_pred HHHHHHHHhcccc
Confidence 333 333444444
No 63
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=42.78 E-value=80 Score=31.01 Aligned_cols=50 Identities=24% Similarity=0.180 Sum_probs=25.2
Q ss_pred HHHHHcC-CCHHHHHHHHHHHHHHHHHHhhhhhcccccCCccccCCCccchhccCcccHHHHH
Q 014378 282 AIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 343 (426)
Q Consensus 282 ~ga~lag-~~~~~~~~l~~~G~~lGiafQI~DDllD~~g~~~~~GK~~g~Dl~~Gk~TlPvl~ 343 (426)
+++.+.| .+.+.+..+...-+-|=.+.-|.||+.|= +|+|.|++|+-..|
T Consensus 84 l~~~~~~~~~~~~~~~~A~avEliH~asLIHDDImD~------------s~~RRG~pt~h~~~ 134 (360)
T 3lmd_A 84 LASEFGEKPLSENVIKAAVVVEITHLATLYHDDVMDE------------ASMRRGVPSANARW 134 (360)
T ss_dssp HHHTTSSSTTCHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------CHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHHHHHhCCCcCC------------CCCCCCCCcHHhhc
Confidence 4444555 44444444555667778889999999772 45677777765555
No 64
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=39.58 E-value=2.3e+02 Score=26.03 Aligned_cols=65 Identities=6% Similarity=0.057 Sum_probs=44.5
Q ss_pred CCCCHHHHHHHHHhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccCCc
Q 014378 257 QRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTS 321 (426)
Q Consensus 257 ~~~s~~~Yl~ii~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lGiafQI~DDllD~~g~~ 321 (426)
..+++++|+++-..-+|..+...+..-++=-..+++..+.+..+-+..+...-+.||+..|..+.
T Consensus 150 ~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~l~~~~~~~~~l~NDl~S~~kE~ 214 (300)
T 1di1_A 150 SIHELGHYLEYREKDVGKALLSALMRFSMGLRLSADELQDMKALEANCAKQLSVVNDIYSYDKEE 214 (300)
T ss_dssp CCCSHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred CCCCHHHHHHHHhhhccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 35699999997655555443332222222123467777788889999999999999999997553
No 65
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=39.26 E-value=49 Score=31.99 Aligned_cols=61 Identities=16% Similarity=0.141 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC------------CCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcCC
Q 014378 168 QCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK 228 (426)
Q Consensus 168 ~~lA~aiEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l~ 228 (426)
..+...-+.|=.|.-|.|||+| .++.+.|++|+-..+|...|--...-+..+|...|..++
T Consensus 205 ~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~ 277 (317)
T 4f62_A 205 AKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVVRLHEQAIAQISEFG 277 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3455666777788889999977 357788899999999998888888888888988888775
No 66
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=39.18 E-value=2.1e+02 Score=26.99 Aligned_cols=49 Identities=18% Similarity=0.145 Sum_probs=32.9
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhc--ccccCCccccCCCccchhccCcccHHHHH
Q 014378 283 IALLAGQTAEVAILAFDYGKNLGLAYQLIDDV--LDFTGTSASLGKGSLSDIRHGIITAPILF 343 (426)
Q Consensus 283 ga~lag~~~~~~~~l~~~G~~lGiafQI~DDl--lD~~g~~~~~GK~~g~Dl~~Gk~TlPvl~ 343 (426)
++.+.|.+++..-.+...-+-|=.+.-|.||+ .| .+|+|.|++|+=..|
T Consensus 57 ~~~~~g~~~~~~~~~A~avEliH~asLIHDDIP~~D------------~s~~RRG~pt~h~~~ 107 (284)
T 2ftz_A 57 LGEDLGVEEEXLLDVAVAVELFHTASLIHDDLPPID------------NADFRRGXPSCHRTY 107 (284)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSTTTT------------CCSEETTEECHHHHH
T ss_pred HHHHhCcCHHHHHHHHHHHHHHHHHHHHhCCchhcC------------CCCCCCCCccHHhhc
Confidence 33334555554445666667777788899999 87 245788888876665
No 67
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=38.98 E-value=79 Score=30.12 Aligned_cols=60 Identities=22% Similarity=0.202 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCC------------CCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcCC
Q 014378 169 CIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK 228 (426)
Q Consensus 169 ~lA~aiEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l~ 228 (426)
.+...-+.|=.|.-|.||++| .++.+.|++|+-..+|...|--...-++..|...|..++
T Consensus 200 ~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~~ 271 (297)
T 3m0g_A 200 PLTAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADLVAEAEAALAPYG 271 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCC---------------------CCHHHHHCSSHHHHHHHHHHHHHHHHTGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 445555677778889999988 346788899999999999998888889999988888775
No 68
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=36.00 E-value=2.8e+02 Score=26.00 Aligned_cols=99 Identities=9% Similarity=-0.094 Sum_probs=61.2
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccCCC-CC-CHHHHHHHHHhhhhhHHHHHHHHHHHHcCCCHHHHH--HH
Q 014378 222 VALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQ-RC-SMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAI--LA 297 (426)
Q Consensus 222 ~~la~l~~~~v~~~ls~~~~~l~~Gq~~dl~~~~~~-~~-s~~~Yl~ii~~KTasL~~~a~~~ga~lag~~~~~~~--~l 297 (426)
..+.....+.....+.+.+..++.+-..+..+.... .+ ++++|+++-..-.|..+..++..-++--..+++..+ .+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~eEYl~~r~~s~g~~~~~~~~~~~~g~~l~~~~~~~p~~ 204 (337)
T 1ps1_A 125 RRTCEGMTPAWCARSARHWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDSAVM 204 (337)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTSHHH
T ss_pred HHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHcccccchhhHHHHHHHHcCCCCCHHHHhChHH
Confidence 334444457778889999999999998887775433 46 899999865444444332222211111123444332 45
Q ss_pred HHHHHHHHHHHhhhhhcccccCC
Q 014378 298 FDYGKNLGLAYQLIDDVLDFTGT 320 (426)
Q Consensus 298 ~~~G~~lGiafQI~DDllD~~g~ 320 (426)
.++-+..+...-+.||+..|..+
T Consensus 205 ~~l~~~~~~i~rL~NDl~S~~kE 227 (337)
T 1ps1_A 205 SAMLQIAVDVNLLLNDIASLEKE 227 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHH
Confidence 56778888899999999999654
No 69
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=35.89 E-value=42 Score=32.22 Aligned_cols=60 Identities=18% Similarity=0.182 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC------------CCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcC
Q 014378 168 QCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL 227 (426)
Q Consensus 168 ~~lA~aiEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l 227 (426)
..+...-+.|=.|.-|.|||+| .++.+.|++|+=..+|...|--...-+...|...|..+
T Consensus 209 ~~l~~~g~~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~ 280 (302)
T 3p8l_A 209 GLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTHQLAEGSAVLEKI 280 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-----------------CCHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455566677778889999977 34677788888888888888777777777787777655
No 70
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=34.81 E-value=1.8e+02 Score=30.17 Aligned_cols=88 Identities=17% Similarity=0.010 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCC-CCCCHHHHHHHHHhhhhhHHHHHHHHHHHHcC-CCHHH-HHH---HHHHHHHHH
Q 014378 232 VVTLLATVVEHLVTGETMQMTTSSD-QRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEV-AIL---AFDYGKNLG 305 (426)
Q Consensus 232 v~~~ls~~~~~l~~Gq~~dl~~~~~-~~~s~~~Yl~ii~~KTasL~~~a~~~ga~lag-~~~~~-~~~---l~~~G~~lG 305 (426)
++..+.+++..++.+-+.+..|... ..+|.++|++.-..-+|.-... +..-..++. .+.+. .+. .-++-+..+
T Consensus 362 ~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~-~~~~~~~g~~lt~e~~~e~~~~~p~i~~~~~ 440 (549)
T 1n1b_A 362 CLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAII-SPTYFTFANASHDTAVIDSLYQYHDILCLAG 440 (549)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHH-HHHHTTSTTCCCCHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcccchhHHHHH-HHHHHHcCCCCcHHHHHhhhcccHHHHHHHH
Confidence 5667778888888888877776433 3479999999754443332211 111111122 23444 332 346777888
Q ss_pred HHHhhhhhcccccCC
Q 014378 306 LAYQLIDDVLDFTGT 320 (426)
Q Consensus 306 iafQI~DDllD~~g~ 320 (426)
+..-+.||+..+..+
T Consensus 441 ~i~RL~NDi~S~~~E 455 (549)
T 1n1b_A 441 IILRLPDDLGTSYFE 455 (549)
T ss_dssp HHHHHHHHHC-----
T ss_pred HHHHHhcccchhhhh
Confidence 889999999988654
No 71
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=33.89 E-value=41 Score=32.14 Aligned_cols=61 Identities=15% Similarity=0.167 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC------------CCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcCC
Q 014378 168 QCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK 228 (426)
Q Consensus 168 ~~lA~aiEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l~ 228 (426)
..+...-+.+=.|.-|.|||+| .++.+.|++|+=..+|...|.-..+-+..+|...|..++
T Consensus 201 ~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~ 273 (301)
T 1rtr_A 201 EHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKLTYHRDAAVDELTQID 273 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3455556677778889999987 467888899988888888888888888888888888764
No 72
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=33.75 E-value=1.1e+02 Score=29.34 Aligned_cols=51 Identities=24% Similarity=0.206 Sum_probs=31.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccCCccccCCCccchhccCcccHHHHH
Q 014378 281 KAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 343 (426)
Q Consensus 281 ~~ga~lag~~~~~~~~l~~~G~~lGiafQI~DDllD~~g~~~~~GK~~g~Dl~~Gk~TlPvl~ 343 (426)
.+++.+.|.+.+..-.+...-+-+=.++-|.||+.| .+|+|.|++|+=..|
T Consensus 53 l~~~~~~g~~~~~~~~~A~avEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~ 103 (325)
T 3aqb_B 53 LLSGFLNDTQKDDLIRTAVSLELVHMASLVHDDYID------------NSDMRRGNTSVHIAF 103 (325)
T ss_dssp HHHHTTSSCCCHHHHHHHHHHHHHHHHHHHHHHHHH------------TCCEETTEECHHHHT
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHHHhCcccc------------CCCCCCCCCCccccc
Confidence 344444444433344455566667778899999977 245677777765443
No 73
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=33.67 E-value=61 Score=31.22 Aligned_cols=61 Identities=13% Similarity=0.092 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC------------CCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcCC
Q 014378 168 QCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK 228 (426)
Q Consensus 168 ~~lA~aiEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l~ 228 (426)
..+...-+.|=.|.-|.|||+| .++.+.|++|+=..+|...|--...-+...|...|..++
T Consensus 213 ~~l~~~g~~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~ 285 (313)
T 3lom_A 213 SALRTYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIAVHYQIAMDSLRLFG 285 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC---------------CCCHHHHSCHHHHHHHHHHHHHHHHHTTTTTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3455566677788889999976 347788999999999999998888888999988887775
No 74
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=33.39 E-value=43 Score=32.60 Aligned_cols=61 Identities=30% Similarity=0.278 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC------------CCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcCC
Q 014378 168 QCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK 228 (426)
Q Consensus 168 ~~lA~aiEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l~ 228 (426)
..+...-+.+=.|.-|.|||+| .++.+.|++|+=..+|...|.-..+-+..+|...|..++
T Consensus 245 ~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a~~~~~~A~~~L~~l~ 317 (335)
T 2h8o_A 245 QRLRLFGEKIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQEQVAEASELLAPYG 317 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-----------------CCCHHHHHCHHHHHHHHHHHHHHHHHHTGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3455566677788889999977 246778888888888888887777778888877777664
No 75
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=32.61 E-value=71 Score=30.91 Aligned_cols=61 Identities=20% Similarity=0.196 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCC------------CCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcCCC
Q 014378 169 CIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN 229 (426)
Q Consensus 169 ~lA~aiEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l~~ 229 (426)
.+...-+.|=.|.-|.|||+| .++.+.|++|+=..+|...|--...-+..+|...|..++.
T Consensus 213 ~l~~~g~~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~ 285 (324)
T 3ts7_A 213 RLDHYAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEEMHEAALESLAGFGP 285 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHHHHHHHHHHTTTTCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 455566677788889999976 3467889999999999999988888889999888887764
No 76
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=32.39 E-value=39 Score=32.38 Aligned_cols=61 Identities=23% Similarity=0.293 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCC------------CCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcCCC
Q 014378 169 CIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN 229 (426)
Q Consensus 169 ~lA~aiEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l~~ 229 (426)
.+...-+.|=.|.-|.||++| .++.+.|++|+-..+|...|--...-+..+|...|..++.
T Consensus 213 ~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~ 285 (302)
T 3p8r_A 213 HLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTLLQEALLALEAIPY 285 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 455556677778889999976 3467788889988899988888888889999888888763
No 77
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=32.36 E-value=1.6e+02 Score=27.99 Aligned_cols=40 Identities=33% Similarity=0.326 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccCCccccCCCccchhccCcccHHHHH
Q 014378 292 EVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 343 (426)
Q Consensus 292 ~~~~~l~~~G~~lGiafQI~DDllD~~g~~~~~GK~~g~Dl~~Gk~TlPvl~ 343 (426)
+..-.+...-+-|=.++=|.||+.| .+|+|.|++|+-..|
T Consensus 61 ~~~~~~A~avEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~ 100 (299)
T 1v4e_A 61 EDAISSLAALELVHLASLLHDDVID------------GARFRRGKETINFMY 100 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------------TCSEETTEECHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhCCCCC------------CCCCCCCCCchhhhc
Confidence 3333455556667778889999977 246788888876554
No 78
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=31.49 E-value=1.3e+02 Score=32.83 Aligned_cols=87 Identities=13% Similarity=0.064 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccC-CCCCCHHHHHHHHHhhhhhHH--HHHHHHHHHHcC-CCHHHHHHHH-----HHHH
Q 014378 232 VVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLI--SNSCKAIALLAG-QTAEVAILAF-----DYGK 302 (426)
Q Consensus 232 v~~~ls~~~~~l~~Gq~~dl~~~~-~~~~s~~~Yl~ii~~KTasL~--~~a~~~ga~lag-~~~~~~~~l~-----~~G~ 302 (426)
++..+-++...++.+-+.+..|.. ...+|.++|++...--+|.-. ...+..+ ++. .+.+..+... ++-+
T Consensus 626 ~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll~~~~~~~--~g~~lt~e~~e~~~~~s~p~l~~ 703 (817)
T 3sdr_A 626 LVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIM--DGQLLSQEALEKVDYPGRRVLTE 703 (817)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHTTC--TTCCCCHHHHHTTCCTTSCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHHHHHHHHHH--cCCCCCHHHHhcccccchHHHHH
Confidence 567777888899999888877643 335799999997554444321 2222222 222 3566655554 6778
Q ss_pred HHHHHHhhhhhcccccCC
Q 014378 303 NLGLAYQLIDDVLDFTGT 320 (426)
Q Consensus 303 ~lGiafQI~DDllD~~g~ 320 (426)
..+...-+.||+..|..+
T Consensus 704 ~~~~I~RL~NDi~S~k~E 721 (817)
T 3sdr_A 704 LNSLISRLADDTKTYKAE 721 (817)
T ss_dssp HHHHHHHHHHHHHSSCC-
T ss_pred HHHHHHHHhccchHHHHH
Confidence 888889999999998654
No 79
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=30.20 E-value=1.5e+02 Score=28.93 Aligned_cols=42 Identities=24% Similarity=0.241 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhcccccCCccccCCCccchhccCcccHHHHH
Q 014378 290 TAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 343 (426)
Q Consensus 290 ~~~~~~~l~~~G~~lGiafQI~DDllD~~g~~~~~GK~~g~Dl~~Gk~TlPvl~ 343 (426)
+.+....+...-+-|=.++-|.||+.| .+|+|.|++|+=..|
T Consensus 63 ~~~~~~~~A~aiEliH~asLiHDDI~D------------~s~~RRG~pt~h~~~ 104 (358)
T 4dhd_A 63 QWRPALPAAAIVELIHNYSLIYDDIID------------RGDVRRGLPTVRKAF 104 (358)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHHHHHT------------TCCEETTEECHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCcccc------------CCCCcCCCccHHHhc
Confidence 333334455566778888999999976 245688888876655
No 80
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=29.75 E-value=2.6e+02 Score=26.91 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=30.3
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccCCccccCCCccchhccCcccHHHHH
Q 014378 285 LLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 343 (426)
Q Consensus 285 ~lag~~~~~~~~l~~~G~~lGiafQI~DDllD~~g~~~~~GK~~g~Dl~~Gk~TlPvl~ 343 (426)
.+.|.+.+....+...-+-|=.++=|.||+.| .+|+|.|++|+-..|
T Consensus 53 ~~~~~~~~~~~~~A~avEliH~asLiHDDI~D------------~s~~RRG~pt~h~~~ 99 (340)
T 2e8v_A 53 RVMNLPKDQLAIVSQIVELLHNSSLLIDDIED------------NAPLRRGQTTSHLIF 99 (340)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHT------------TCSEETTEECHHHHT
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHhCcccc------------CCCCCCCCcchhhcc
Confidence 33455555444556666667778889999976 245677777765443
No 81
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=28.83 E-value=1.9e+02 Score=27.90 Aligned_cols=48 Identities=21% Similarity=0.201 Sum_probs=33.5
Q ss_pred HHHcC-CCHHHHHHHHHHHHHHHHHHhhhhhcccccCCccccCCCccchhccCcccHHHHH
Q 014378 284 ALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 343 (426)
Q Consensus 284 a~lag-~~~~~~~~l~~~G~~lGiafQI~DDllD~~g~~~~~GK~~g~Dl~~Gk~TlPvl~ 343 (426)
+.+++ .+.+....+...-+-|=.++=|.||+.| .+|+|.|++|+-..|
T Consensus 67 ~~~g~~~~~~~~~~~A~aiEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~ 115 (334)
T 3pko_A 67 STFGNAATPAQLQAGAAAIEILHVGTLIHDDVID------------DSPTRRGVRTIQMTY 115 (334)
T ss_dssp HTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH------------TCSEETTEECHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHhCccCC------------CCCCcCCCccHHHHc
Confidence 33444 4666555666677778889999999977 245788888876554
No 82
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=27.99 E-value=1.9e+02 Score=31.35 Aligned_cols=88 Identities=7% Similarity=0.027 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccC-CCCCCHHHHHHHHHhhhhhH-HHHHHHHHHHHcC-CCHHHHHHH---HHHHHHH
Q 014378 231 EVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASL-ISNSCKAIALLAG-QTAEVAILA---FDYGKNL 304 (426)
Q Consensus 231 ~v~~~ls~~~~~l~~Gq~~dl~~~~-~~~~s~~~Yl~ii~~KTasL-~~~a~~~ga~lag-~~~~~~~~l---~~~G~~l 304 (426)
.++..+-++...++.+-+.+..|.. ...+|.++|++...--+|.- +...+..+ ++. .+.+..+.. .++-+..
T Consensus 566 ~~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~~~~--~G~~lt~e~~e~~~~~~~l~~~~ 643 (764)
T 3p5p_A 566 DMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILL--MGELVKDDVVEKVHYPSNMFELV 643 (764)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHT--SSSCCCGGGHHHHSTTSHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHHHHH--cCCCCcHHHHhhhhhhHHHHHHH
Confidence 3667778888899998888877643 33579999999755444442 22222221 222 345554444 4577888
Q ss_pred HHHHhhhhhcccccCC
Q 014378 305 GLAYQLIDDVLDFTGT 320 (426)
Q Consensus 305 GiafQI~DDllD~~g~ 320 (426)
+...-+.||+..+..+
T Consensus 644 ~~I~RL~NDi~S~k~E 659 (764)
T 3p5p_A 644 SLSWRLTNDTKTYQAE 659 (764)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccchHHH
Confidence 8889999999998644
No 83
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=26.72 E-value=1.8e+02 Score=28.04 Aligned_cols=49 Identities=18% Similarity=0.134 Sum_probs=31.1
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccCCccccCCCccchhccCcccHHHHH
Q 014378 283 IALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 343 (426)
Q Consensus 283 ga~lag~~~~~~~~l~~~G~~lGiafQI~DDllD~~g~~~~~GK~~g~Dl~~Gk~TlPvl~ 343 (426)
++.+.|.+.+....+...-+-|=.++-|.||+.| .+|+|.|++|+=..|
T Consensus 57 ~~~~~g~~~~~~~~~A~avEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~ 105 (342)
T 1wy0_A 57 STEAVGGDPLRAIYPAVAIELIHNYSLVHDDIMD------------MDETRRGKPTVHRIW 105 (342)
T ss_dssp HTTTTTSCGGGGHHHHHHHHHHHHHHHHHHHHHH------------TCCCSTTSCCHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHCCccc------------CCCCCCCCCcccccc
Confidence 3333454444334455566667778899999987 245677777765554
No 84
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=26.15 E-value=1.6e+02 Score=28.64 Aligned_cols=37 Identities=30% Similarity=0.141 Sum_probs=23.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhccc
Q 014378 280 CKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLD 316 (426)
Q Consensus 280 ~~~ga~lag~~~~~~~~l~~~G~~lGiafQI~DDllD 316 (426)
|.+++.+.|.+.+....+...-+-|=.++-|.||+.|
T Consensus 73 ~ll~~~~~g~~~~~~~~~A~aiEliH~asLiHDDi~D 109 (345)
T 3oyr_A 73 TVAAARLAGADNDHFQKLAAAVEFIHTATLLHDDVVD 109 (345)
T ss_dssp HHHHHHHTTCCSSTHHHHHHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCcccC
Confidence 3344444555544444556666778889999999977
No 85
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=26.04 E-value=2.2e+02 Score=26.89 Aligned_cols=50 Identities=18% Similarity=0.092 Sum_probs=31.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHhhhhhcccccCCccccCCCccchhccCcccHHHHH
Q 014378 282 AIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 343 (426)
Q Consensus 282 ~ga~lag~~~~~~~~l~~~G~~lGiafQI~DDllD~~g~~~~~GK~~g~Dl~~Gk~TlPvl~ 343 (426)
+++.+.|.+++....+...-+-|=.++=|.||+.| .+|+|.|++|+=..|
T Consensus 59 ~~~~~~g~~~~~~~~~A~avEliH~asLIHDDi~D------------~s~~RRG~pt~h~~~ 108 (289)
T 2azj_A 59 FFTVALGGDIKDSYGGALAIEILHSASLALCDIVD------------LDATRRGDKAAWVVY 108 (289)
T ss_dssp HHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHT------------TCCBSSSSBCHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhCCCCC------------CCCCCCCCccHHHhc
Confidence 34444454444334455556667778889999966 246788888876555
No 86
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=22.57 E-value=5.4e+02 Score=25.05 Aligned_cols=151 Identities=13% Similarity=0.012 Sum_probs=82.9
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCcccccc--Chh--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh
Q 014378 176 MIHVASLLHDDVLDDADTRRGIGSLNFVM--GNK--LAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQM 251 (426)
Q Consensus 176 liH~AsLIHDDIiD~s~~RRG~pt~h~~~--G~~--~AVlaGD~Lla~a~~~la~l~~~~v~~~ls~~~~~l~~Gq~~dl 251 (426)
.+.++..+.||+.|++.. .....+..+ |.. ..++. .+...+.-+.+.-.+.....+.+.+.+...|...+.
T Consensus 91 d~~~~~F~lDD~~d~~~~--~l~~~~~~ll~G~~~~~Pl~~---al~dl~~rl~~~~~p~~~~rf~~s~~~~~~a~~~Ea 165 (374)
T 1yyq_A 91 IHYTYTLVLDDSKDDPYP--TMVNYFDDLQAGREQAHPWWA---LVNEHFPNVLRHFGPFCSLNLIRSTLDFFEGCWIEQ 165 (374)
T ss_dssp HHHHHHHHHTTCCSCSHH--HHTTHHHHHHHTCCCSSHHHH---HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhcccccCcHH--HHHHHHHHHhcCCCCCChHHH---HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778889999987531 111122111 110 01111 122233444555567777888888888889988886
Q ss_pred cccCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHcC-CC------HHHHHHHHHHHHHHHHHHhhhhhcccccCCcccc
Q 014378 252 TTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QT------AEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASL 324 (426)
Q Consensus 252 ~~~~~~~~s~~~Yl~ii~~KTasL~~~a~~~ga~lag-~~------~~~~~~l~~~G~~lGiafQI~DDllD~~g~~~~~ 324 (426)
.+ ....++.++|....+.+||.. + ++ .+.++.. .- ++....+..+...+ =..|||+-|..+....
T Consensus 166 ~n-~~~~p~~~~Y~~~rR~~sG~~-E-~~-~~~~~P~~~~~e~~~~~~~~~~i~am~~~i----~~~NDIlSf~KE~~~~ 237 (374)
T 1yyq_A 166 YN-FGGFPGSHDYPQFLRRMNGLG-H-CV-GASLWPKEQFNERSLFLEITSAIAQMENWM----VWVNDLMSFYKEFDDE 237 (374)
T ss_dssp TC-CCCCTTCTTHHHHHHHHHHCH-H-HH-HHTTCCTTTCCTTTTHHHHHHHHHHHHHHH----HHHHHHHHHHHHTTCS
T ss_pred hc-cCCCCCHHHHHHHHHhhccHH-H-HH-HHhhccccccchhhcchhHHHHHHHHHHHH----Hhhhhhhccchhhhcc
Confidence 54 333457788999889999973 1 11 1112211 11 22444444444433 4579999987554211
Q ss_pred CCCccchhccCcccHHHHHHhhhC
Q 014378 325 GKGSLSDIRHGIITAPILFAMEEF 348 (426)
Q Consensus 325 GK~~g~Dl~~Gk~TlPvl~Al~~~ 348 (426)
| | ..+++.+++-.+.
T Consensus 238 G-----d----~~NlV~vl~~~~g 252 (374)
T 1yyq_A 238 R-----D----QISLVKNYVVSDE 252 (374)
T ss_dssp S-----C----CCCHHHHHHHHHT
T ss_pred C-----C----ccchhhhehhcCC
Confidence 2 1 3467777766543
No 87
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=22.47 E-value=2.3e+02 Score=26.98 Aligned_cols=40 Identities=15% Similarity=-0.002 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhc--ccccCCccccCCCccchhccCcccHHHHH
Q 014378 292 EVAILAFDYGKNLGLAYQLIDDV--LDFTGTSASLGKGSLSDIRHGIITAPILF 343 (426)
Q Consensus 292 ~~~~~l~~~G~~lGiafQI~DDl--lD~~g~~~~~GK~~g~Dl~~Gk~TlPvl~ 343 (426)
+....+...-+-|=.++-|.||+ .| .+|+|.|++|+=..|
T Consensus 74 ~~~~~~A~aiEliH~aSLIHDDIp~mD------------~s~~RRG~pt~h~~~ 115 (311)
T 3llw_A 74 TEYFKIALSIECLHTYSLIHDDLPCMD------------NAALRRNHPTLHAKY 115 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTTT------------CCSEETTEECHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCccccC------------CCcccCCCCchhhhc
Confidence 44444555556677788999999 77 246778888865554
No 88
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=22.25 E-value=1.1e+02 Score=29.42 Aligned_cols=59 Identities=20% Similarity=0.124 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCC------------CCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHcC
Q 014378 169 CIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL 227 (426)
Q Consensus 169 ~lA~aiEliH~AsLIHDDIiD------------~s~~RRG~pt~h~~~G~~~AVlaGD~Lla~a~~~la~l 227 (426)
.+...-+.|=.|.-|.|||+| .++.+.|++|+=..+|...|--.-.-++..|...+..+
T Consensus 209 ~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~~~~~~~~a~~~l~~~ 279 (309)
T 3pde_A 209 AYLQFADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQALIDTIHSGQAALQGL 279 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC-----------CTTTSSSHHHHHCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 455556667778889999977 35788888898888888888777777788887777763
No 89
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=22.23 E-value=1.2e+02 Score=28.80 Aligned_cols=61 Identities=13% Similarity=0.177 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCC------CCCCCCCCCccccccC--------hhHHHHHHHHHHHHHHHHHHcCCC
Q 014378 169 CIAEITEMIHVASLLHDDVLD------DADTRRGIGSLNFVMG--------NKLAVLAGDFLLSRACVALASLKN 229 (426)
Q Consensus 169 ~lA~aiEliH~AsLIHDDIiD------~s~~RRG~pt~h~~~G--------~~~AVlaGD~Lla~a~~~la~l~~ 229 (426)
.+...-+.+=.|.-|.|||+| +.+.+.|++|+-..|+ ...|.-...-+..+|...|..+++
T Consensus 191 ~l~~~g~~lGlaFQI~DDilD~~~~~~gkd~~~gk~Tlp~l~al~~~~~~~le~a~~~a~~~~~~A~~~L~~lp~ 265 (295)
T 3ipi_A 191 RFSHFGNALGTAYQIVDDILEFLEVVEGKESKFTSETLPHIYMKSTSKEEALKKSIDCVKLHVAAAKETLETFRE 265 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccCCCcccCcccHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 445555667778889999987 3556778888777776 555666666667777777777664
Done!