Query 014381
Match_columns 425
No_of_seqs 173 out of 453
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 04:34:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014381.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014381hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1171 Metallothionein-like p 100.0 6.5E-46 1.4E-50 374.1 12.5 136 139-274 117-253 (406)
2 PF03638 TCR: Tesmin/TSO1-like 99.6 6.2E-16 1.3E-20 113.9 2.7 41 151-191 1-42 (42)
3 PF03638 TCR: Tesmin/TSO1-like 99.6 8.1E-16 1.8E-20 113.3 2.9 40 237-276 2-41 (42)
4 KOG1171 Metallothionein-like p 99.4 5.1E-14 1.1E-18 143.7 3.8 125 151-276 215-390 (406)
5 KOG1079 Transcriptional repres 95.4 0.0075 1.6E-07 66.2 2.1 62 151-268 505-569 (739)
6 KOG3813 Uncharacterized conser 81.1 2.6 5.6E-05 46.2 5.3 42 234-276 303-351 (640)
7 PF05033 Pre-SET: Pre-SET moti 71.3 4 8.7E-05 33.7 2.9 38 236-274 44-103 (103)
8 KOG1924 RhoA GTPase effector D 44.4 68 0.0015 37.5 7.3 13 209-221 667-679 (1102)
9 KOG1079 Transcriptional repres 41.5 11 0.00024 42.5 0.8 29 153-182 539-569 (739)
10 KOG4592 Uncharacterized conser 36.7 1.2E+02 0.0027 34.4 7.7 60 48-107 121-195 (728)
11 KOG3813 Uncharacterized conser 24.0 47 0.001 36.9 1.9 37 153-190 307-351 (640)
No 1
>KOG1171 consensus Metallothionein-like protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.5e-46 Score=374.13 Aligned_cols=136 Identities=60% Similarity=1.229 Sum_probs=128.7
Q ss_pred cccCCCCCCCCCCCCccccccCccccccchhhhcCCCCCCC-CCCCCCCCCccchHHHHHHHHHHHhhCCCCCCccccCC
Q 014381 139 PRANTDGKDGTPKKQKQCNCRNSRCLKLYCECFAAGIYCDG-CNCVNCHNNVEHEVARQEAVGATLERNPNAFRPKIASS 217 (425)
Q Consensus 139 ~~~~~e~kdgtpkk~K~CnCKKSkCLKLYCECFaaG~~C~~-CnC~nC~N~~ene~eR~eAIe~iL~RNP~AF~PKI~~s 217 (425)
.....+..++++-+++.||||+|+|||+||||||+|.||++ |+|+||+|+.+|+++|.+|++.+|+|||+||+|||+++
T Consensus 117 ~~s~~~~~~~~~g~k~~~~ck~SkclklYCeCFAsG~yC~~~CnCvnC~N~~~~e~~r~~a~k~~l~RNP~AFkPKia~s 196 (406)
T KOG1171|consen 117 VKTKKGTSQGAPGSKKKCNCKKSKCLKLYCECFASGVYCTGPCNCVNCFNNPEHESVRLKARKQILERNPNAFKPKIAAS 196 (406)
T ss_pred CccccccccCCCCCccCCCchHHHHHHHhHHHHhhcccccCCcceeeccCCCcchHHHHHHHHHHhhcCccccccccccC
Confidence 34455667888888999999999999999999999999996 99999999999999999999999999999999999999
Q ss_pred CCCCcchhhhHHHHHHhhhcCCCcccCCccccchhhhhhhcCCccCCCCcccCCCCC
Q 014381 218 PHGAQDAREDAREAQLAAKHNKGCHCKKSGCLKKYCECFQANILCSENCRCLDCKNF 274 (425)
Q Consensus 218 ~~~~~d~~~~a~~~~~~~k~~kGC~CKKS~CLK~YCeCF~ag~~Cs~~CkC~~CkN~ 274 (425)
.++..+..+++...+..++|++|||||||+|||+||||||+|++|+++|+|++|+|+
T Consensus 197 ~~~~~da~~~~~~~~~sa~hkkGC~CkkSgClKkYCECyQa~vlCS~nCkC~~CkN~ 253 (406)
T KOG1171|consen 197 SSGIADASEEASKTPASARHKKGCNCKKSGCLKKYCECYQAGVLCSSNCKCQGCKNN 253 (406)
T ss_pred CcccchhhhhhhccchhhhhcCCCCCccccchHHHHHHHhcCCCccccccCcCCccc
Confidence 999999999999999999999999999999999999999999999999999999993
No 2
>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The family includes Tesmin Q9Y4I5 from SWISSPROT [] and TSO1 Q9LE32 from SWISSPROT []. This group of proteins is called a CXC domain in [].
Probab=99.58 E-value=6.2e-16 Score=113.91 Aligned_cols=41 Identities=61% Similarity=1.446 Sum_probs=37.9
Q ss_pred CCCccccccCccccccchhhhcCCCCCC-CCCCCCCCCCccc
Q 014381 151 KKQKQCNCRNSRCLKLYCECFAAGIYCD-GCNCVNCHNNVEH 191 (425)
Q Consensus 151 kk~K~CnCKKSkCLKLYCECFaaG~~C~-~CnC~nC~N~~en 191 (425)
++.++|+|+||+|||+|||||++|++|+ .|+|.+|+|+.+|
T Consensus 1 ~~~~gC~Ckks~Clk~YC~Cf~~g~~C~~~C~C~~C~N~~~~ 42 (42)
T PF03638_consen 1 KKKKGCNCKKSKCLKLYCECFQAGRFCTPNCKCQNCKNTEEN 42 (42)
T ss_pred CCCCCCcccCcChhhhhCHHHHCcCcCCCCcccCCCCCcCCC
Confidence 3578999999999999999999999998 6999999998875
No 3
>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The family includes Tesmin Q9Y4I5 from SWISSPROT [] and TSO1 Q9LE32 from SWISSPROT []. This group of proteins is called a CXC domain in [].
Probab=99.58 E-value=8.1e-16 Score=113.30 Aligned_cols=40 Identities=63% Similarity=1.395 Sum_probs=38.3
Q ss_pred cCCCcccCCccccchhhhhhhcCCccCCCCcccCCCCCCC
Q 014381 237 HNKGCHCKKSGCLKKYCECFQANILCSENCRCLDCKNFEG 276 (425)
Q Consensus 237 ~~kGC~CKKS~CLK~YCeCF~ag~~Cs~~CkC~~CkN~e~ 276 (425)
+.+||+|+||+|||+|||||++|++|++.|+|++|+|.++
T Consensus 2 ~~~gC~Ckks~Clk~YC~Cf~~g~~C~~~C~C~~C~N~~~ 41 (42)
T PF03638_consen 2 KKKGCNCKKSKCLKLYCECFQAGRFCTPNCKCQNCKNTEE 41 (42)
T ss_pred CCCCCcccCcChhhhhCHHHHCcCcCCCCcccCCCCCcCC
Confidence 5789999999999999999999999999999999999876
No 4
>KOG1171 consensus Metallothionein-like protein [Inorganic ion transport and metabolism]
Probab=99.43 E-value=5.1e-14 Score=143.67 Aligned_cols=125 Identities=29% Similarity=0.544 Sum_probs=80.3
Q ss_pred CCCccccccCccccccchhhhcCCCCCC-CCCCCCCCCCccchHH------HHHHHHHH--------HhhCCCCCC----
Q 014381 151 KKQKQCNCRNSRCLKLYCECFAAGIYCD-GCNCVNCHNNVEHEVA------RQEAVGAT--------LERNPNAFR---- 211 (425)
Q Consensus 151 kk~K~CnCKKSkCLKLYCECFaaG~~C~-~CnC~nC~N~~ene~e------R~eAIe~i--------L~RNP~AF~---- 211 (425)
+|++|||||||+|||.|||||++|+.|+ +|+|.+|+|+..+.+. ++ +...+ ...|-.+++
T Consensus 215 ~hkkGC~CkkSgClKkYCECyQa~vlCS~nCkC~~CkN~~g~~~s~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~ 293 (406)
T KOG1171|consen 215 RHKKGCNCKKSGCLKKYCECYQAGVLCSSNCKCQGCKNNFGYKDSKTQQPPTK-ALMSTPVESSGPAAQQNTEARRKSDP 293 (406)
T ss_pred hhcCCCCCccccchHHHHHHHhcCCCccccccCcCCccchhhccccccCCchh-hhccccccccccccccccccccCCCC
Confidence 6899999999999999999999999998 8999999995444332 11 11111 122222211
Q ss_pred ---------ccccCCCCCCcc-hhh----------hHHHH-HH---------hhhcCC--CcccCCccccchhhhhhhcC
Q 014381 212 ---------PKIASSPHGAQD-ARE----------DAREA-QL---------AAKHNK--GCHCKKSGCLKKYCECFQAN 259 (425)
Q Consensus 212 ---------PKI~~s~~~~~d-~~~----------~a~~~-~~---------~~k~~k--GC~CKKS~CLK~YCeCF~ag 259 (425)
|.+...+....| .+. ++... ++ ...... +|.+....+|+.|++|+..-
T Consensus 294 ~~~~~~~~~~~~~~lp~~~~d~~r~~~~~~~~~v~ea~~~cm~~~~~~~~~~e~~~~~~~~~~~~e~~vl~~f~~cl~~~ 373 (406)
T KOG1171|consen 294 PASPLPDNDPLLLHLPDLSDDGNRLPPNTLALEVDEAITICMLAQAEEAKPVEQSQNEGDKELEQEQLVLEEFGRCLEQI 373 (406)
T ss_pred CCCCcccccccccCCcccccCcCCCChHHHhhhhhhHHHHHHhhccccccchhhcccccchhHHHHHHHHHHHHHHHhcc
Confidence 000111111111 000 00000 00 111223 69999999999999999999
Q ss_pred CccCCCCcccCCCCCCC
Q 014381 260 ILCSENCRCLDCKNFEG 276 (425)
Q Consensus 260 ~~Cs~~CkC~~CkN~e~ 276 (425)
+-|...+++.+|.+.++
T Consensus 374 i~~~~~~~~~~~r~~~~ 390 (406)
T KOG1171|consen 374 IPNITELSPDGDRASED 390 (406)
T ss_pred ccccceecccccccccc
Confidence 99999999999999876
No 5
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=95.43 E-value=0.0075 Score=66.25 Aligned_cols=62 Identities=35% Similarity=0.997 Sum_probs=50.7
Q ss_pred CCCccccccCccccccchhhhcCCCCCC-CCCCC-CCCCCccchHHHHHHHHHHHhhCCCCCCccccCCCCCCcchhhhH
Q 014381 151 KKQKQCNCRNSRCLKLYCECFAAGIYCD-GCNCV-NCHNNVEHEVARQEAVGATLERNPNAFRPKIASSPHGAQDAREDA 228 (425)
Q Consensus 151 kk~K~CnCKKSkCLKLYCECFaaG~~C~-~CnC~-nC~N~~ene~eR~eAIe~iL~RNP~AF~PKI~~s~~~~~d~~~~a 228 (425)
++-.+|||-+ -|.|-..+.+|. -|.|. +|+|. |
T Consensus 505 ~hp~~c~c~~------~C~C~~n~~~CEk~C~C~~dC~nr---------------------F------------------ 539 (739)
T KOG1079|consen 505 DHPGPCNCGV------GCPCIDNETFCEKFCYCSPDCRNR---------------------F------------------ 539 (739)
T ss_pred cCCCCCCCCC------CCcccccCcchhhcccCCHHHHhc---------------------C------------------
Confidence 4556677433 488889999998 69998 88882 2
Q ss_pred HHHHHhhhcCCCcccCCccccchhhhhhhcCCccC-CCCcc
Q 014381 229 REAQLAAKHNKGCHCKKSGCLKKYCECFQANILCS-ENCRC 268 (425)
Q Consensus 229 ~~~~~~~k~~kGC~CKKS~CLK~YCeCF~ag~~Cs-~~CkC 268 (425)
.||+| +++|.-+-|.||.|..-|. +-|.+
T Consensus 540 ----------~GC~C-k~QC~tkqCpC~~A~rECdPd~Cl~ 569 (739)
T KOG1079|consen 540 ----------PGCRC-KAQCNTKQCPCYLAVRECDPDVCLM 569 (739)
T ss_pred ----------CCCCc-ccccccCcCchhhhccccCchHHhc
Confidence 49999 9999999999999999999 67776
No 6
>KOG3813 consensus Uncharacterized conserved protein (tumor-suppressor AXUD1 in humans) [General function prediction only]
Probab=81.10 E-value=2.6 Score=46.17 Aligned_cols=42 Identities=38% Similarity=0.903 Sum_probs=36.7
Q ss_pred hhhcCCCcccCCccccchhhhhhhcCCccCC-----CCcc--cCCCCCCC
Q 014381 234 AAKHNKGCHCKKSGCLKKYCECFQANILCSE-----NCRC--LDCKNFEG 276 (425)
Q Consensus 234 ~~k~~kGC~CKKS~CLK~YCeCF~ag~~Cs~-----~CkC--~~CkN~e~ 276 (425)
..|...||.|+ -.|.--.|-|-++||+|-. -|-| .+|.|.++
T Consensus 303 nSReeCGCsCr-~~CdPETCaCSqaGIkCQvDr~~fPCgC~rEgCgNp~G 351 (640)
T KOG3813|consen 303 NSREECGCSCR-GVCDPETCACSQAGIKCQVDRGEFPCGCFREGCGNPEG 351 (640)
T ss_pred hhHHhhCCccc-ceeChhhcchhccCceEeecCcccccccchhhcCCCcc
Confidence 45677999999 8999999999999999964 4878 69999987
No 7
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils and stabilising the SET domain. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site [] when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity []. ; GO: 0008270 zinc ion binding, 0018024 histone-lysine N-methyltransferase activity, 0034968 histone lysine methylation, 0005634 nucleus; PDB: 3K5K_A 2O8J_D 3RJW_B 1ML9_A 1PEG_B 1MVH_A 1MVX_A 3BO5_A 2RFI_B 3MO5_B ....
Probab=71.30 E-value=4 Score=33.75 Aligned_cols=38 Identities=39% Similarity=1.035 Sum_probs=22.5
Q ss_pred hcCCCcccCCccc-cchhhhhhhcCC--------------------ccCCCCccc-CCCCC
Q 014381 236 KHNKGCHCKKSGC-LKKYCECFQANI--------------------LCSENCRCL-DCKNF 274 (425)
Q Consensus 236 k~~kGC~CKKS~C-LK~YCeCF~ag~--------------------~Cs~~CkC~-~CkN~ 274 (425)
....||.| ...| ....|+|.+... -|++.|.|- .|.|.
T Consensus 44 ~~~~~C~C-~~~C~~~~~C~C~~~~~~~~~Y~~~g~l~~~~~~~i~EC~~~C~C~~~C~NR 103 (103)
T PF05033_consen 44 EFLQGCDC-SGDCSNPSNCECLQRNGGIFAYDSNGRLRIPDKPPIFECNDNCGCSPSCRNR 103 (103)
T ss_dssp GGTS-----SSSSTCTTTSHHHCCTSSS-SB-TTSSBSSSSTSEEE---TTSSS-TTSTT-
T ss_pred ccCccCcc-CCCCCCCCCCcCccccCccccccCCCcCccCCCCeEEeCCCCCCCCCCCCCC
Confidence 45679999 5569 889999986553 299999995 88884
No 8
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=44.39 E-value=68 Score=37.50 Aligned_cols=13 Identities=31% Similarity=0.585 Sum_probs=6.0
Q ss_pred CCCccccCCCCCC
Q 014381 209 AFRPKIASSPHGA 221 (425)
Q Consensus 209 AF~PKI~~s~~~~ 221 (425)
|-+||..+...+.
T Consensus 667 atq~k~~k~~e~~ 679 (1102)
T KOG1924|consen 667 ATQPKVKKEQEGG 679 (1102)
T ss_pred hcccccccccccc
Confidence 3345555444443
No 9
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=41.47 E-value=11 Score=42.50 Aligned_cols=29 Identities=31% Similarity=0.803 Sum_probs=25.6
Q ss_pred CccccccCccccccchhhhcCCCCCCC--CCC
Q 014381 153 QKQCNCRNSRCLKLYCECFAAGIYCDG--CNC 182 (425)
Q Consensus 153 ~K~CnCKKSkCLKLYCECFaaG~~C~~--CnC 182 (425)
-.||+| +++|--.-|.||.|..-|+- |.+
T Consensus 539 F~GC~C-k~QC~tkqCpC~~A~rECdPd~Cl~ 569 (739)
T KOG1079|consen 539 FPGCRC-KAQCNTKQCPCYLAVRECDPDVCLM 569 (739)
T ss_pred CCCCCc-ccccccCcCchhhhccccCchHHhc
Confidence 578999 99999999999999999984 554
No 10
>KOG4592 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.71 E-value=1.2e+02 Score=34.41 Aligned_cols=60 Identities=37% Similarity=0.550 Sum_probs=35.2
Q ss_pred CCCCCCCCCCcccccccccCCCCCcchhhh------------hc-CCCC--CcccccccccCCCCCCCCCcCCCc
Q 014381 48 SPLQPQPPKSQPQVQSKVASPSQSQPLVRL------------QL-LPPS--SQPHVQAHMRSPSQAMPQWQARPQ 107 (425)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~-~p~~--~~~~~~~~~~~~~~~~~~~q~rp~ 107 (425)
.|-+++.|+.+||---++|.-..++|.-+- .+ -|++ ++|+++.+|..+|+..|+.|+-|.
T Consensus 121 ~pq~~~~pa~~PqqmaplQ~~L~~Qp~e~qqqq~qqQl~N~~~~p~P~~lpq~pqqq~~m~~qs~q~~psq~~p~ 195 (728)
T KOG4592|consen 121 KPQQQQHPAHQPQQMAPLQEALNPQPFEKQQQQSQQQLGNRQQVPTPTMLPQQPQQQHHMKQQSQQQPPSQAQPK 195 (728)
T ss_pred CcccccCCCCCCcccCChhhhcCCCcchHHHHHHHHHHhccccCCCCCCccccccccchhhhhccCCChhhcCCC
Confidence 444455555555544555555544444211 11 1322 567888999999988888886665
No 11
>KOG3813 consensus Uncharacterized conserved protein (tumor-suppressor AXUD1 in humans) [General function prediction only]
Probab=24.03 E-value=47 Score=36.91 Aligned_cols=37 Identities=38% Similarity=0.927 Sum_probs=32.0
Q ss_pred CccccccCccccccchhhhcCCCCCC------CCCCC--CCCCCcc
Q 014381 153 QKQCNCRNSRCLKLYCECFAAGIYCD------GCNCV--NCHNNVE 190 (425)
Q Consensus 153 ~K~CnCKKSkCLKLYCECFaaG~~C~------~CnC~--nC~N~~e 190 (425)
..||.|. -.|+--.|-|-.+|+.|- -|.|. +|-|...
T Consensus 307 eCGCsCr-~~CdPETCaCSqaGIkCQvDr~~fPCgC~rEgCgNp~G 351 (640)
T KOG3813|consen 307 ECGCSCR-GVCDPETCACSQAGIKCQVDRGEFPCGCFREGCGNPEG 351 (640)
T ss_pred hhCCccc-ceeChhhcchhccCceEeecCcccccccchhhcCCCcc
Confidence 5799999 899999999999999993 38886 8999754
Done!