Query 014382
Match_columns 425
No_of_seqs 282 out of 2178
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 04:35:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014382.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014382hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 1.9E-52 4.1E-57 388.4 29.4 363 26-393 56-452 (476)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 2.9E-46 6.3E-51 347.3 29.2 327 19-351 104-464 (476)
3 KOG1427 Uncharacterized conser 100.0 2.6E-45 5.6E-50 319.9 18.7 326 20-353 57-400 (443)
4 KOG1427 Uncharacterized conser 100.0 5.8E-43 1.3E-47 305.2 19.4 351 36-398 18-391 (443)
5 KOG0783 Uncharacterized conser 100.0 7.4E-29 1.6E-33 241.8 14.7 304 32-353 136-450 (1267)
6 KOG1428 Inhibitor of type V ad 99.9 4.6E-25 9.9E-30 223.1 22.3 327 20-370 480-855 (3738)
7 KOG0783 Uncharacterized conser 99.9 4.1E-26 8.9E-31 222.8 13.4 275 83-362 134-417 (1267)
8 KOG1428 Inhibitor of type V ad 99.9 1.4E-22 3E-27 205.4 23.8 285 16-319 522-856 (3738)
9 PF00415 RCC1: Regulator of ch 99.3 4.9E-12 1.1E-16 85.4 4.6 50 300-349 1-51 (51)
10 PF00415 RCC1: Regulator of ch 99.2 7.3E-12 1.6E-16 84.5 4.5 50 37-86 1-51 (51)
11 PF13540 RCC1_2: Regulator of 99.1 5.8E-11 1.3E-15 69.6 4.0 30 336-365 1-30 (30)
12 KOG0941 E3 ubiquitin protein l 99.1 5.1E-13 1.1E-17 133.1 -9.5 191 61-302 4-198 (850)
13 PF13540 RCC1_2: Regulator of 99.1 1.2E-10 2.6E-15 68.3 4.2 30 284-313 1-30 (30)
14 KOG0941 E3 ubiquitin protein l 99.1 1.1E-12 2.4E-17 130.7 -7.5 151 115-312 5-156 (850)
15 PF11725 AvrE: Pathogenicity f 96.1 0.11 2.4E-06 57.5 13.8 111 229-352 702-814 (1774)
16 KOG3669 Uncharacterized conser 95.8 0.65 1.4E-05 46.1 16.2 157 183-357 190-351 (705)
17 PF11725 AvrE: Pathogenicity f 94.6 1.1 2.4E-05 50.2 15.4 70 276-358 697-769 (1774)
18 KOG3669 Uncharacterized conser 94.6 5.6 0.00012 39.8 23.2 108 26-148 190-299 (705)
19 KOG4693 Uncharacterized conser 93.5 1.2 2.6E-05 40.1 10.9 58 32-98 83-147 (392)
20 KOG0646 WD40 repeat protein [G 90.5 18 0.00039 35.3 17.5 159 125-307 83-245 (476)
21 PHA03098 kelch-like protein; P 88.9 26 0.00057 35.8 17.0 15 32-46 289-303 (534)
22 KOG0315 G-protein beta subunit 88.2 19 0.00042 32.4 20.0 67 125-202 126-196 (311)
23 KOG0315 G-protein beta subunit 87.4 22 0.00047 32.1 24.2 164 114-309 72-245 (311)
24 COG4257 Vgb Streptogramin lyas 87.1 23 0.00051 32.4 13.0 142 27-200 62-205 (353)
25 cd00200 WD40 WD40 domain, foun 86.3 23 0.0005 31.3 33.7 109 18-151 9-123 (289)
26 KOG4693 Uncharacterized conser 85.3 29 0.00063 31.6 16.3 63 80-150 80-147 (392)
27 KOG0649 WD40 repeat protein [G 84.4 30 0.00065 31.1 12.2 80 175-255 62-142 (325)
28 PLN02153 epithiospecifier prot 83.4 43 0.00092 32.0 25.2 17 185-202 129-145 (341)
29 KOG0291 WD40-repeat-containing 83.1 65 0.0014 33.8 24.9 250 16-316 295-557 (893)
30 KOG1900 Nuclear pore complex, 82.9 55 0.0012 36.6 15.7 217 83-308 92-339 (1311)
31 KOG0293 WD40 repeat-containing 82.4 50 0.0011 32.0 16.1 67 230-310 396-471 (519)
32 PHA03098 kelch-like protein; P 81.6 66 0.0014 32.9 16.8 18 134-152 335-352 (534)
33 cd00200 WD40 WD40 domain, foun 81.5 37 0.0008 30.0 26.8 106 72-202 95-206 (289)
34 KOG0943 Predicted ubiquitin-pr 81.1 0.093 2E-06 55.9 -5.1 132 125-261 375-509 (3015)
35 PF07569 Hira: TUP1-like enhan 80.9 6.5 0.00014 35.0 7.1 29 282-310 13-41 (219)
36 KOG4441 Proteins containing BT 80.7 38 0.00082 35.1 13.5 57 190-256 471-530 (571)
37 TIGR01063 gyrA DNA gyrase, A s 80.2 93 0.002 33.7 24.1 214 26-258 544-770 (800)
38 KOG0646 WD40 repeat protein [G 80.0 64 0.0014 31.7 19.5 95 20-134 83-185 (476)
39 PF07569 Hira: TUP1-like enhan 80.0 8.7 0.00019 34.2 7.6 35 12-46 6-40 (219)
40 KOG0943 Predicted ubiquitin-pr 79.5 0.27 5.9E-06 52.7 -2.4 129 70-204 373-506 (3015)
41 PHA02713 hypothetical protein; 79.2 53 0.0011 33.9 14.1 14 138-151 394-407 (557)
42 PRK14131 N-acetylneuraminic ac 78.2 69 0.0015 31.1 21.1 18 134-151 131-148 (376)
43 PLN02153 epithiospecifier prot 78.0 65 0.0014 30.7 21.3 17 186-203 244-260 (341)
44 COG4257 Vgb Streptogramin lyas 77.6 31 0.00068 31.6 10.1 99 29-149 106-206 (353)
45 PHA02713 hypothetical protein; 76.1 1E+02 0.0022 31.9 15.4 20 132-151 341-360 (557)
46 PF04841 Vps16_N: Vps16, N-ter 75.4 88 0.0019 30.9 18.1 70 124-201 81-153 (410)
47 smart00706 TECPR Beta propelle 75.0 7 0.00015 23.2 3.9 25 124-148 8-33 (35)
48 KOG1900 Nuclear pore complex, 74.2 1.1E+02 0.0025 34.2 14.9 214 137-360 93-339 (1311)
49 PF04762 IKI3: IKI3 family; I 73.2 1.5E+02 0.0033 32.7 22.0 251 7-322 415-691 (928)
50 PRK05560 DNA gyrase subunit A; 70.1 1.7E+02 0.0037 31.8 24.0 215 25-258 545-773 (805)
51 smart00706 TECPR Beta propelle 69.7 8.8 0.00019 22.8 3.5 25 334-358 8-33 (35)
52 PRK14131 N-acetylneuraminic ac 68.4 1.2E+02 0.0026 29.4 17.0 18 186-203 131-148 (376)
53 PF02239 Cytochrom_D1: Cytochr 63.4 1.5E+02 0.0032 28.8 14.5 116 176-307 27-156 (369)
54 KOG2106 Uncharacterized conser 62.8 1.7E+02 0.0037 29.3 25.2 56 72-147 248-303 (626)
55 KOG4441 Proteins containing BT 61.9 1E+02 0.0022 31.9 11.5 57 244-308 471-530 (571)
56 PF12341 DUF3639: Protein of u 61.9 25 0.00055 19.8 3.9 24 230-253 2-25 (27)
57 TIGR01062 parC_Gneg DNA topois 58.9 2.6E+02 0.0056 30.0 15.8 161 79-263 493-660 (735)
58 PRK13979 DNA topoisomerase IV 58.5 3E+02 0.0064 30.6 25.3 252 80-355 516-821 (957)
59 PF02239 Cytochrom_D1: Cytochr 58.0 1.9E+02 0.004 28.1 14.3 117 72-201 28-156 (369)
60 KOG0291 WD40-repeat-containing 55.5 2.8E+02 0.0061 29.4 30.8 126 243-386 313-444 (893)
61 PHA02790 Kelch-like protein; P 54.4 1.3E+02 0.0028 30.4 10.7 13 139-151 315-327 (480)
62 TIGR01063 gyrA DNA gyrase, A s 53.1 3.3E+02 0.0072 29.6 22.0 163 78-255 544-716 (800)
63 TIGR03548 mutarot_permut cycli 52.9 2E+02 0.0044 27.0 13.5 17 240-257 116-132 (323)
64 PRK05560 DNA gyrase subunit A; 52.4 3.4E+02 0.0074 29.5 21.9 216 78-310 546-773 (805)
65 TIGR03548 mutarot_permut cycli 51.8 2.1E+02 0.0046 26.9 13.1 18 134-152 116-133 (323)
66 PF10168 Nup88: Nuclear pore c 49.2 3.6E+02 0.0079 28.9 18.6 118 30-150 34-178 (717)
67 PF04762 IKI3: IKI3 family; I 49.1 4.1E+02 0.0089 29.5 23.7 28 123-150 426-455 (928)
68 PF06739 SBBP: Beta-propeller 48.6 23 0.0005 21.6 2.7 18 293-310 16-33 (38)
69 KOG0278 Serine/threonine kinas 46.7 2.3E+02 0.0049 25.8 11.4 138 126-309 146-287 (334)
70 KOG0289 mRNA splicing factor [ 43.5 3.3E+02 0.0072 26.8 10.8 66 240-309 350-419 (506)
71 KOG0278 Serine/threonine kinas 43.2 2.6E+02 0.0056 25.5 12.6 82 165-262 134-218 (334)
72 PF04841 Vps16_N: Vps16, N-ter 40.4 3.7E+02 0.0081 26.5 22.9 72 19-99 81-155 (410)
73 KOG1034 Transcriptional repres 39.8 2.6E+02 0.0057 26.5 9.1 58 243-308 323-382 (385)
74 KOG1230 Protein containing rep 39.1 2.5E+02 0.0054 27.6 9.1 18 291-308 233-250 (521)
75 KOG2111 Uncharacterized conser 38.6 3.4E+02 0.0074 25.6 21.3 27 123-150 94-120 (346)
76 COG5308 NUP170 Nuclear pore co 37.3 3.9E+02 0.0084 29.2 10.7 64 82-150 94-159 (1263)
77 PHA02790 Kelch-like protein; P 37.2 1.7E+02 0.0037 29.5 8.5 15 32-46 313-327 (480)
78 KOG0296 Angio-associated migra 36.4 4E+02 0.0086 25.6 24.0 113 19-155 65-182 (399)
79 PF13418 Kelch_4: Galactose ox 34.1 46 0.001 21.1 2.6 17 29-45 4-20 (49)
80 KOG0316 Conserved WD40 repeat- 33.0 3.7E+02 0.0081 24.3 13.4 37 59-96 134-170 (307)
81 KOG1034 Transcriptional repres 32.3 1.3E+02 0.0028 28.4 5.9 59 84-150 322-382 (385)
82 PLN03215 ascorbic acid mannose 32.1 2.2E+02 0.0047 27.7 7.7 62 125-201 161-225 (373)
83 PF07250 Glyoxal_oxid_N: Glyox 31.8 3.9E+02 0.0085 24.2 11.7 65 237-310 117-190 (243)
84 KOG1274 WD40 repeat protein [G 31.4 7.2E+02 0.016 27.1 22.9 68 26-96 13-81 (933)
85 PF03785 Peptidase_C25_C: Pept 30.9 63 0.0014 23.6 2.9 41 324-366 8-49 (81)
86 PF01436 NHL: NHL repeat; Int 30.4 98 0.0021 17.2 3.2 18 30-47 5-22 (28)
87 KOG1240 Protein kinase contain 29.3 9E+02 0.02 27.6 15.1 120 125-256 1050-1180(1431)
88 PLN02772 guanylate kinase 29.3 1.9E+02 0.0041 28.4 6.8 60 32-99 29-95 (398)
89 PLN03215 ascorbic acid mannose 27.1 2.5E+02 0.0054 27.3 7.2 62 20-97 161-225 (373)
90 PHA02146 hypothetical protein 26.0 80 0.0017 22.1 2.7 35 235-269 23-58 (86)
91 PF13964 Kelch_6: Kelch motif 24.5 79 0.0017 20.1 2.5 19 30-48 4-22 (50)
92 KOG2280 Vacuolar assembly/sort 24.3 9E+02 0.019 25.9 13.3 144 133-305 94-242 (829)
93 PRK11138 outer membrane biogen 23.1 6.9E+02 0.015 24.1 13.8 136 28-200 256-391 (394)
94 PF03785 Peptidase_C25_C: Pept 22.6 1.3E+02 0.0027 22.1 3.2 32 177-208 17-49 (81)
95 PF06433 Me-amine-dh_H: Methyl 22.1 6.2E+02 0.013 24.3 8.6 158 179-360 31-212 (342)
96 PF07646 Kelch_2: Kelch motif; 21.4 1.1E+02 0.0023 19.4 2.6 17 30-46 4-20 (49)
97 KOG1587 Cytoplasmic dynein int 21.2 9.3E+02 0.02 24.9 14.0 191 28-254 255-469 (555)
98 cd00058 FGF Acidic and basic f 20.9 4.3E+02 0.0094 21.0 8.4 61 181-254 3-64 (123)
99 PLN02772 guanylate kinase 20.5 2.5E+02 0.0055 27.5 5.9 62 240-309 27-95 (398)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=1.9e-52 Score=388.45 Aligned_cols=363 Identities=31% Similarity=0.541 Sum_probs=294.2
Q ss_pred ccCCceEEEEcCCeEEEEeCCCCCccCCCCCCCc-cCCeeecCC--CCCcEEEEEcCCCeEEEEEcCCCEEEEEeCCCCC
Q 014382 26 AGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDR-LSPTQLSAL--DGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFG 102 (425)
Q Consensus 26 ~g~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~-~~p~~v~~~--~~~~i~~i~~G~~~~~~lt~~~g~v~~wG~n~~g 102 (425)
.-..|...++.-..||+||.|...+||++..+.. ..|++.+.. +...|++++||+.|+++|++| |+||+||.|..|
T Consensus 56 ~~~~~~~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~D-g~lyswG~N~~G 134 (476)
T COG5184 56 IINKHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHD-GNLYSWGDNDDG 134 (476)
T ss_pred hcccchhhhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCC-CCEEEeccCccc
Confidence 3456667888999999999999999999987654 889988877 667899999999999999999 999999999999
Q ss_pred CCCCCCC----------------CCcccceeecc----cCCCCEEEEEeCCCEEEEEEcCCCEEEEeCCCCCccCCCCCC
Q 014382 103 RLGHGNS----------------SDLFTPLPIKA----LHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTE 162 (425)
Q Consensus 103 ~lg~~~~----------------~~~~~p~~v~~----~~~~~i~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~ 162 (425)
+||+... .....|..+.. ....+++++.||++++++|+++|+||.||.+..+.++.+...
T Consensus 135 ~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~ 214 (476)
T COG5184 135 ALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYK 214 (476)
T ss_pred ccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCcccccccccccc
Confidence 9998761 12345665554 234489999999999999999999999999888888877444
Q ss_pred Cccc----ceeeeccCCceEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEec
Q 014382 163 DSLV----PQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACG 238 (425)
Q Consensus 163 ~~~~----p~~~~~~~~~~i~~i~~G~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~g 238 (425)
.... ++++... ...|+++++|.+|.++|+++|+||.||+|..||||.........+..+..+ +.-..|+.|+||
T Consensus 215 ~s~k~~~~~~p~~v~-~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~-f~i~~i~~vacG 292 (476)
T COG5184 215 NSQKTSIQFTPLKVP-KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDP-FAIRNIKYVACG 292 (476)
T ss_pred ccccceeeeeeeecC-chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCCh-hhhhhhhhcccC
Confidence 3322 3333222 457999999999999999999999999999999998877666555555322 122357889999
Q ss_pred CceEEEEecCCCEEEecCCCCCcCCCCCCC----CcccceeeccccCCcEEEEecCCceEEEEeCCCcEEEeeeCCCCCc
Q 014382 239 WRHTISVSSSGRLYSYGWSKYGQLGHGDFK----DHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQV 314 (425)
Q Consensus 239 ~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~----~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqL 314 (425)
.+|+++|+++|++|+||.|.+|||+.++.. ....|.....+....|.+|++|..|+++|..+|.||.||++..+||
T Consensus 293 ~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~ql 372 (476)
T COG5184 293 KDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQL 372 (476)
T ss_pred cceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCccccc
Confidence 999999999999999999999999998221 2334555566667779999999999999999999999999999999
Q ss_pred ccCCCC--CcccceEeecCCCCcEEEEEcCCCeeEEEeCCCCEEEeeCCCCCccCCCCC-CCCCCCeEeeecccCCCceE
Q 014382 315 GVGDNV--DHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGES-SDRNSPKIIEPLSLDGSKGQ 391 (425)
Q Consensus 315 G~~~~~--~~~~p~~i~~~~~~~i~~i~~G~~~~~~l~~~g~vy~wG~n~~gqLG~g~~-~~~~~p~~~~~~~~~~~~~~ 391 (425)
|..+.. ....|..+ ....++.+++||..|.++.+.+|+||+||+|++||||+|+. .+...|+.+.....++....
T Consensus 373 g~~~~~~~~~~~~~~l--s~~~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~~~~~~pt~i~~~~~~~~~~i 450 (476)
T COG5184 373 GIQEEITIDVSTPTKL--SVAIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIRQPLLSGHNII 450 (476)
T ss_pred cCcccceeecCCcccc--ccccceEEEEecCccceeeccCCceEEecCchhhhccCCchhhhccccccccccccCCCceE
Confidence 998844 33444443 33467999999999999999999999999999999999986 45777888776555665544
Q ss_pred Ee
Q 014382 392 NI 393 (425)
Q Consensus 392 ~~ 393 (425)
-.
T Consensus 451 ~~ 452 (476)
T COG5184 451 LA 452 (476)
T ss_pred Ee
Confidence 33
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=2.9e-46 Score=347.28 Aligned_cols=327 Identities=29% Similarity=0.530 Sum_probs=264.1
Q ss_pred CCeEEEeccCCceEEEEcCCeEEEEeCCCCCccCCCCC----------------CCccCCeeecCC----CCCcEEEEEc
Q 014382 19 RPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDA----------------EDRLSPTQLSAL----DGHEIVSVTC 78 (425)
Q Consensus 19 ~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqLG~~~~----------------~~~~~p~~v~~~----~~~~i~~i~~ 78 (425)
..|++++||+.|+++|++||.||+||.|..|+||.... +...+|..|+.. ...++++++|
T Consensus 104 ~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~c 183 (476)
T COG5184 104 ASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLAC 183 (476)
T ss_pred eeeEEeecCCceEEeecCCCCEEEeccCcccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeec
Confidence 68999999999999999999999999999999998651 125778888772 2247999999
Q ss_pred CCCeEEEEEcCCCEEEEEeCCCCCCCCCCCCCCccc----ceeecccCCCCEEEEEeCCCEEEEEEcCCCEEEEeCCCCC
Q 014382 79 GADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFT----PLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNG 154 (425)
Q Consensus 79 G~~~~~~lt~~~g~v~~wG~n~~g~lg~~~~~~~~~----p~~v~~~~~~~i~~v~~G~~~~~~lt~~G~vy~~G~n~~g 154 (425)
|+.++++|+++ |+||.||....+.++.+...+... ++|+... ...|+++++|.+|.++|+++|+||.||+|..|
T Consensus 184 g~e~svil~~~-G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~-~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkg 261 (476)
T COG5184 184 GWEISVILTAD-GRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP-KKAIVQLAAGADHLIALTNEGKVYGWGSNQKG 261 (476)
T ss_pred CCceEEEEccC-CcEEEecCccccccccccccccccceeeeeeeecC-chheeeeccCCceEEEEecCCcEEEecCCccc
Confidence 99999999999 999999999888888885544433 5555554 45899999999999999999999999999999
Q ss_pred ccCCCCCCCcccceeeeccC-CceEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCC----CcceeeeeeeecCC
Q 014382 155 QLGLGTTEDSLVPQKLQAFE-GVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRND----RLIPEKVATVDLQR 229 (425)
Q Consensus 155 qlg~~~~~~~~~p~~~~~~~-~~~i~~i~~G~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~----~~~p~~v~~~~~~~ 229 (425)
|||....+....+..+..+. -..|+.|+||.+|+++|+++|++|+||.|.+|||+.++... ...|.....+ ..
T Consensus 262 qlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~--~~ 339 (476)
T COG5184 262 QLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLL--SG 339 (476)
T ss_pred ccCCchhhhcccccccCChhhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccC--CC
Confidence 99999877665555554322 23478899999999999999999999999999999982211 1122222221 24
Q ss_pred CeEEEEEecCceEEEEecCCCEEEecCCCCCcCCCCC--CCCcccceeeccccCCcEEEEecCCceEEEEeCCCcEEEee
Q 014382 230 EKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGD--FKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWG 307 (425)
Q Consensus 230 ~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~--~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~v~~wG 307 (425)
..|..|++|..|+++|..+|.||+||++..+|||..+ ......|+++..... +.+++||..|.++.+++|+||.||
T Consensus 340 ~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls~~~~--~~~v~~gt~~~~~~t~~gsvy~wG 417 (476)
T COG5184 340 VTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVAIK--LEQVACGTHHNIARTDDGSVYSWG 417 (476)
T ss_pred ceEEEEecCcceEEEEecCceEEEecCCccccccCcccceeecCCccccccccc--eEEEEecCccceeeccCCceEEec
Confidence 4689999999999999999999999999999999998 455556666554433 999999999999999999999999
Q ss_pred eCCCCCcccCCCCCc-ccceEeec--CCCCcEEEEEcCCCeeEEEeC
Q 014382 308 WNKFGQVGVGDNVDH-CSPVQVKF--PLDQKVVQISCGWRHTLAVTE 351 (425)
Q Consensus 308 ~n~~gqLG~~~~~~~-~~p~~i~~--~~~~~i~~i~~G~~~~~~l~~ 351 (425)
++.+|+||.+..... ..|+.++- .....++..-||....++...
T Consensus 418 ~ge~gnlG~g~~~~~~~~pt~i~~~~~~~~~~i~~g~~~~~~v~~~~ 464 (476)
T COG5184 418 WGEHGNLGNGPKEADVLVPTLIRQPLLSGHNIILAGYGNQFSVIEET 464 (476)
T ss_pred CchhhhccCCchhhhccccccccccccCCCceEEeccCcceEEEecc
Confidence 999999999876554 45666652 345677788777766666543
No 3
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=2.6e-45 Score=319.88 Aligned_cols=326 Identities=29% Similarity=0.561 Sum_probs=284.8
Q ss_pred CeEEEecc--CCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcCCCeEEEEEcCCCEEEEEe
Q 014382 20 PVLLISAG--ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWG 97 (425)
Q Consensus 20 ~i~~i~~g--~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~~g~v~~wG 97 (425)
+|..+++| .-|+++|+-+|+.|.||+|..||||+++...+..|+.|+.+...+|++-+||++|+++|+++ |+||.||
T Consensus 57 ~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhgD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdt-G~v~afG 135 (443)
T KOG1427|consen 57 NIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGDMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDT-GQVLAFG 135 (443)
T ss_pred eEEEEecccchhhEEEEecccceeecccCccCccCccchhhccCCchhhhhhhhhHHHHhhccCcEEEEecC-CcEEEec
Confidence 56777765 66999999999999999999999999998899999999999999999999999999999999 9999999
Q ss_pred CCCCCCCCCCCCCCcccceeecccCCCCEEEEEeCCCEEEEEEcCCCEEEEeCCCCCccCCCCCCC--------------
Q 014382 98 WGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTED-------------- 163 (425)
Q Consensus 98 ~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~-------------- 163 (425)
.|.+||||.++.......++........|+.|+||.+|++.|+..+.+..+|--.+||||+++...
T Consensus 136 eNK~GQlGlgn~~~~v~s~~~~~~~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~ 215 (443)
T KOG1427|consen 136 ENKYGQLGLGNAKNEVESTPLPCVVSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEA 215 (443)
T ss_pred ccccccccccccccccccCCCccccCccceeeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeeec
Confidence 999999999998655444445555567899999999999999999999999999999999987542
Q ss_pred cccceeeeccCCceEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEecCceEE
Q 014382 164 SLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTI 243 (425)
Q Consensus 164 ~~~p~~~~~~~~~~i~~i~~G~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~g~~~~~ 243 (425)
+..|..+.++++.+|++++||.+|+++++++++||+||..-+|+||+....+...|+.+..++.++..-.++.||+..++
T Consensus 216 ~pr~~~i~~~dgvqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl 295 (443)
T KOG1427|consen 216 QPRPKAIASLDGVQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSL 295 (443)
T ss_pred CCCccccccccceeeEEEeccCcceeeecCCccEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccce
Confidence 23566677888999999999999999999999999999999999999999999999999988888888899999999999
Q ss_pred EEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcEEEEecCCceEEEEeCCCcEEEeeeCCCCCcccCCCC--C
Q 014382 244 SVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNV--D 321 (425)
Q Consensus 244 ~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqLG~~~~~--~ 321 (425)
.+.+-|.||.||.+... -++...|..+..+.+..+..+.|+..|.+ +..+..+..||...+|.+..+... .
T Consensus 296 ~v~e~G~Lf~~g~~k~~------ge~~mypkP~~dlsgwnl~~~~~~~~h~~-v~ad~s~i~wg~~~~g~~lggp~~Qks 368 (443)
T KOG1427|consen 296 NVAEGGQLFMWGKIKNN------GEDWMYPKPMMDLSGWNLRWMDSGSMHHF-VGADSSCISWGHAQYGELLGGPNGQKS 368 (443)
T ss_pred eecccceeEEeeccccC------cccccCCCchhhcCCccCCCcCccceeee-ecccccccccccccccccccCcccccc
Confidence 99999999999986532 24566788888899988999999998866 566678999999988776544332 3
Q ss_pred cccceEeecCCCCcEEEEEcCCCeeEEEeCCC
Q 014382 322 HCSPVQVKFPLDQKVVQISCGWRHTLAVTERQ 353 (425)
Q Consensus 322 ~~~p~~i~~~~~~~i~~i~~G~~~~~~l~~~g 353 (425)
...|..++.+....|.+|++|..|+++|.++-
T Consensus 369 s~~Pk~v~~l~~i~v~~VamGysHs~vivd~t 400 (443)
T KOG1427|consen 369 SAAPKKVDMLEGIHVMGVAMGYSHSMVIVDRT 400 (443)
T ss_pred ccCccccchhcceeccceeeccceEEEEEccc
Confidence 35688888888889999999999999997653
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=5.8e-43 Score=305.16 Aligned_cols=351 Identities=28% Similarity=0.473 Sum_probs=287.7
Q ss_pred cCCeEEEEeCCCCCccCCCC---CCCccCCeeecCCCCCcEEEEEcC--CCeEEEEEcCCCEEEEEeCCCCCCCCCCCCC
Q 014382 36 SGNIVCSWGRGEDGQLGHGD---AEDRLSPTQLSALDGHEIVSVTCG--ADHTTAYSESCMQVYSWGWGDFGRLGHGNSS 110 (425)
Q Consensus 36 ~~g~v~~wG~n~~gqLG~~~---~~~~~~p~~v~~~~~~~i~~i~~G--~~~~~~lt~~~g~v~~wG~n~~g~lg~~~~~ 110 (425)
..|++..+|.-..-+.|..+ ..+...|.++..+.+.+|+-|+.| ..|+++|+-+ |+.|.||.|..||||+++..
T Consensus 18 ~~g~ml~~g~v~wd~tgkRd~~~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~me-gk~~~wGRNekGQLGhgD~k 96 (443)
T KOG1427|consen 18 KGGEMLFCGAVAWDITGKRDGAMEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDME-GKCYTWGRNEKGQLGHGDMK 96 (443)
T ss_pred CCccEEEeccchhhhhcccccccccccccceeccccccceEEEEecccchhhEEEEecc-cceeecccCccCccCccchh
Confidence 34667767765555544332 235788999999999999999876 6799999999 99999999999999999999
Q ss_pred CcccceeecccCCCCEEEEEeCCCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeeccCCceEEEEEeCCCeEEE
Q 014382 111 DLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVA 190 (425)
Q Consensus 111 ~~~~p~~v~~~~~~~i~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~ 190 (425)
....|+.+..+...+|++.+||++|+++||++|.||.||.|.+||||.++.......+.+......+|..|+||.+|++.
T Consensus 97 ~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~s~~~~~~~~~~v~~v~cga~ftv~ 176 (443)
T KOG1427|consen 97 QRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEVESTPLPCVVSDEVTNVACGADFTVW 176 (443)
T ss_pred hccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccccccccCCCccccCccceeeccccceEEE
Confidence 99999999999999999999999999999999999999999999999998664443333334445689999999999999
Q ss_pred EecCCcEEEeeCCCCCCCCCCCCCCC--------------cceeeeeeeecCCCeEEEEEecCceEEEEecCCCEEEecC
Q 014382 191 VAEDGELYGWGWGRYGNLGLGDRNDR--------------LIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGW 256 (425)
Q Consensus 191 L~~~g~vy~~G~n~~gqlg~~~~~~~--------------~~p~~v~~~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~ 256 (425)
|+..+.+.++|...|||||++..... ..|..|..+ ....|++++||.+|+++++++++||+||.
T Consensus 177 l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~--dgvqiv~~acg~nhtvavd~nkrVysWGF 254 (443)
T KOG1427|consen 177 LSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASL--DGVQIVKVACGTNHTVAVDKNKRVYSWGF 254 (443)
T ss_pred eecccceeecCCccccccccCcchhhccccccceeeeecCCCccccccc--cceeeEEEeccCcceeeecCCccEEEecc
Confidence 99999999999999999999866332 223334433 37899999999999999999999999999
Q ss_pred CCCCcCCCCCCCCcccceeecccc--CCcEEEEecCCceEEEEeCCCcEEEeeeCCCCCcccCCCCCcccceEeecCCCC
Q 014382 257 SKYGQLGHGDFKDHLVPCQLEALR--ESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQ 334 (425)
Q Consensus 257 n~~gqlg~~~~~~~~~p~~v~~~~--~~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~ 334 (425)
+-||+||+....+...|.+++.++ +..-.++.||+..++++.+-|.+|.||.+.. +-+....|.++..+...
T Consensus 255 GGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~------~ge~~mypkP~~dlsgw 328 (443)
T KOG1427|consen 255 GGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKN------NGEDWMYPKPMMDLSGW 328 (443)
T ss_pred ccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEeecccc------CcccccCCCchhhcCCc
Confidence 999999999999999999998765 3446788999999999999999999998864 22344567777777788
Q ss_pred cEEEEEcCCCeeEEEeCCCCEEEeeCCCCCccCCCC--CCCCCCCeEeeecccCCCceEEeecccc
Q 014382 335 KVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGE--SSDRNSPKIIEPLSLDGSKGQNIASSKY 398 (425)
Q Consensus 335 ~i~~i~~G~~~~~~l~~~g~vy~wG~n~~gqLG~g~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 398 (425)
++..+.|+..|.+ +..|-.+.+||...+|.++-+. +.....|..+. .+++.+..+|+...-
T Consensus 329 nl~~~~~~~~h~~-v~ad~s~i~wg~~~~g~~lggp~~Qkss~~Pk~v~--~l~~i~v~~VamGys 391 (443)
T KOG1427|consen 329 NLRWMDSGSMHHF-VGADSSCISWGHAQYGELLGGPNGQKSSAAPKKVD--MLEGIHVMGVAMGYS 391 (443)
T ss_pred cCCCcCccceeee-ecccccccccccccccccccCccccccccCccccc--hhcceeccceeeccc
Confidence 9999999988865 5778899999999888766554 34566676655 456777777765443
No 5
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.96 E-value=7.4e-29 Score=241.81 Aligned_cols=304 Identities=26% Similarity=0.387 Sum_probs=235.9
Q ss_pred EEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCC--CcEEEEEcCCCeEEEEEcCCCEEEEEeCCCCCCCCCCCC
Q 014382 32 VALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDG--HEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNS 109 (425)
Q Consensus 32 ~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~--~~i~~i~~G~~~~~~lt~~~g~v~~wG~n~~g~lg~~~~ 109 (425)
.+++.-..||.||.|.+-.||++...+...|.+|..++. .-+.+|+.+..|++|+++. |+||++|-+..|+||+++.
T Consensus 136 ~~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~k-gqvY~cGhG~GGRlG~gde 214 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEK-GQVYVCGHGAGGRLGFGDE 214 (1267)
T ss_pred cccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCC-CcEEEeccCCCCccCcCcc
Confidence 456666889999999999999999999999999987763 4578899999999999999 9999999999999999999
Q ss_pred CCcccceeecccCCCCEEEEEeCCCEEEEEEcCCCEEEEeCCCCCccCCCCCC-Ccccceeeecc--CCc-eEEEEEeCC
Q 014382 110 SDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTE-DSLVPQKLQAF--EGV-SIKMVAAGA 185 (425)
Q Consensus 110 ~~~~~p~~v~~~~~~~i~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~-~~~~p~~~~~~--~~~-~i~~i~~G~ 185 (425)
+....|+.|+.+.+.+|.+|++...|+++||++|-||+||.|..+|||..+.. ....|..+... ++. .|+-|++|.
T Consensus 215 q~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg~ 294 (1267)
T KOG0783|consen 215 QYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAGK 294 (1267)
T ss_pred cccccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhccc
Confidence 99999999999999999999999999999999999999999999999987655 34455555432 222 689999999
Q ss_pred CeEEEEecCCcEEEeeCCCCCCCCCCCCCC-CcceeeeeeeecCCCeEEEEEecCceEEEEecCCCEEEecCCCCCcCCC
Q 014382 186 EHSVAVAEDGELYGWGWGRYGNLGLGDRND-RLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGH 264 (425)
Q Consensus 186 ~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~-~~~p~~v~~~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~ 264 (425)
.|+++.++. .||+||.|. ||||..++.. ...|+.+... ...|..++|...-++++++++.+|++-+-+.-.+
T Consensus 295 ~hsVawt~~-~VY~wGlN~-GQlGi~~n~~~Vt~Pr~l~~~---~~~v~~v~a~~~ATVc~~~~~~i~~~ady~~~k~-- 367 (1267)
T KOG0783|consen 295 SHSVAWTDT-DVYSWGLNN-GQLGISDNISVVTTPRRLAGL---LSPVIHVVATTRATVCLLQNNSIIAFADYNQVKL-- 367 (1267)
T ss_pred ceeeeeecc-eEEEecccC-ceecCCCCCceeecchhhccc---ccceEEEEecCccEEEEecCCcEEEEecccceec--
Confidence 999999965 799999876 9999887744 4556555332 4689999999999999999999999875332222
Q ss_pred CCCCCcccceeec--c--ccCCcEEEEecCCceEEEEeCCCcEEEeeeCCCCCcccCCCCCcccceEeecCCCCcEEEEE
Q 014382 265 GDFKDHLVPCQLE--A--LRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQIS 340 (425)
Q Consensus 265 ~~~~~~~~p~~v~--~--~~~~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~ 340 (425)
...........|. . +....+++..+...-.++||+-|+||.|-.+..- ...+.+.|.++ ..|.+|+
T Consensus 368 ~~n~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~-----~~~c~ftp~r~-----~~isdIa 437 (1267)
T KOG0783|consen 368 PFNVDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNST-----RTSCKFTPLRI-----FEISDIA 437 (1267)
T ss_pred CcchhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCc-----eeeeeccccee-----eehhhhh
Confidence 1111111111111 0 1112355666777788899999999999866421 12333445444 2456777
Q ss_pred cCCCeeEEEeCCC
Q 014382 341 CGWRHTLAVTERQ 353 (425)
Q Consensus 341 ~G~~~~~~l~~~g 353 (425)
--.+..++++.||
T Consensus 438 ~~~N~~~~~t~dG 450 (1267)
T KOG0783|consen 438 WTANSLILCTRDG 450 (1267)
T ss_pred hccceEEEEecCc
Confidence 7778999999999
No 6
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.94 E-value=4.6e-25 Score=223.13 Aligned_cols=327 Identities=23% Similarity=0.324 Sum_probs=222.2
Q ss_pred CeEEEeccCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcCCCeEEEEEcC-CCEEEEEeC
Q 014382 20 PVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSES-CMQVYSWGW 98 (425)
Q Consensus 20 ~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~-~g~v~~wG~ 98 (425)
.-+.+-.++...++-+++|+||.-|... .+|+-.+.. ....+... ++|++|+.|-+.+.|+.-. .|-++.-++
T Consensus 480 qtv~L~~~RE~A~iqa~sGKvYYaGn~t--~~Gl~e~G~--nWmEL~l~--~~IVq~SVG~D~~~~~~~A~~G~I~~v~D 553 (3738)
T KOG1428|consen 480 QTVDLHFTREMAFIQARSGKVYYAGNGT--RFGLFETGN--NWMELCLP--EPIVQISVGIDTIMFRSGAGHGWIASVDD 553 (3738)
T ss_pred hheecccchhhhhhhhcCccEEEecCcc--EEeEEccCC--ceEEecCC--CceEEEEeccchhheeeccCcceEEeccC
Confidence 3455667888888889999999998653 466544332 22333322 4799999999888777654 044444442
Q ss_pred CCCCCCCCCCCCCcccceeecccCCCCEEEEEeCCCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeeccCCceE
Q 014382 99 GDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSI 178 (425)
Q Consensus 99 n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i 178 (425)
.. ..| .-.........+|+.|.+...-.-.++++|++|..|....- .....+.+..+++.-|
T Consensus 554 ~k--~~~--------~~Rr~~P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm~--------~n~SSqmln~L~~~~i 615 (3738)
T KOG1428|consen 554 KK--RNG--------RLRRLVPSNRRKIVHVCASGHVYGYVSENGKIFMGGLHTMR--------VNVSSQMLNGLDNVMI 615 (3738)
T ss_pred cc--ccc--------chhhcCCCCcceeEEEeeeeEEEEEEccCCeEEeecceeEE--------ecchHHHhhcccccee
Confidence 21 111 11112222345788887666556688999999999864310 1112345667888899
Q ss_pred EEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcc-eeeeeeee-----------cCCCeEEEEEecCceEE---
Q 014382 179 KMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLI-PEKVATVD-----------LQREKMVMVACGWRHTI--- 243 (425)
Q Consensus 179 ~~i~~G~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~-p~~v~~~~-----------~~~~~i~~i~~g~~~~~--- 243 (425)
.+++.|..|.++++.+|.||+||.|+.+|+|.-....... |..-...+ +.+...+...||.....
T Consensus 616 sslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~Gva 695 (3738)
T KOG1428|consen 616 SSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVA 695 (3738)
T ss_pred ehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhcccccccccc
Confidence 9999999999999999999999999999999754432221 11110000 00112222333332211
Q ss_pred ---EEecCCCEEEecCCCCCcCCCC------C--------------CC-------Ccccceeec---cccCCcEEEEecC
Q 014382 244 ---SVSSSGRLYSYGWSKYGQLGHG------D--------------FK-------DHLVPCQLE---ALRESFISQISGG 290 (425)
Q Consensus 244 ---~lt~~G~vy~~G~n~~gqlg~~------~--------------~~-------~~~~p~~v~---~~~~~~i~~i~~G 290 (425)
+-...|.+-.+|.++.+.+--+ + +. ...-|..+. ...+.++.+|+||
T Consensus 696 C~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG 775 (3738)
T KOG1428|consen 696 CGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCG 775 (3738)
T ss_pred cccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEecc
Confidence 1123456666666665543111 0 00 111233332 2234679999999
Q ss_pred CceEEEEeCCCcEEEeeeCCCCCcccCCCCCcccceEeecCCCCcEEEEEcCCCeeEEEeCCCCEEEeeCCCCCccCCCC
Q 014382 291 WRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGE 370 (425)
Q Consensus 291 ~~~~~~lt~~g~v~~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~l~~~g~vy~wG~n~~gqLG~g~ 370 (425)
..|+++|.+|++||.||+|.+||||.|+......|+++.+|.+..+++|++|++|++++..||+||+||.-.+|||+..-
T Consensus 776 ~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~ 855 (3738)
T KOG1428|consen 776 NFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLARPA 855 (3738)
T ss_pred CceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEEEeccccCccccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999764
No 7
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.93 E-value=4.1e-26 Score=222.78 Aligned_cols=275 Identities=21% Similarity=0.349 Sum_probs=215.1
Q ss_pred EEEEEcCCCEEEEEeCCCCCCCCCCCCCCcccceeecccC--CCCEEEEEeCCCEEEEEEcCCCEEEEeCCCCCccCCCC
Q 014382 83 TTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALH--SLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGT 160 (425)
Q Consensus 83 ~~~lt~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~--~~~i~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~ 160 (425)
..+.+++-..||+||.|.+..||+++......|..|..+. +.-+.+|..+..|++++++.|+||++|....|.||+++
T Consensus 134 i~~~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gd 213 (1267)
T KOG0783|consen 134 IHPVLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGD 213 (1267)
T ss_pred cccccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCc
Confidence 3344444489999999999999999999988998888764 44578899999999999999999999999999999999
Q ss_pred CCCcccceeeeccCCceEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCC-CcceeeeeeeecCCC-eEEEEEec
Q 014382 161 TEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRND-RLIPEKVATVDLQRE-KMVMVACG 238 (425)
Q Consensus 161 ~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~-~~~p~~v~~~~~~~~-~i~~i~~g 238 (425)
......|.+++.+.+.++.+|+....|+++||++|-||+||.|..+|||..+... ...|.+|....+++. .|+.|++|
T Consensus 214 eq~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg 293 (1267)
T KOG0783|consen 214 EQYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAG 293 (1267)
T ss_pred ccccccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhcc
Confidence 9888999999999999999999999999999999999999999999999876643 345666554444444 89999999
Q ss_pred CceEEEEecCCCEEEecCCCCCcCCCCCCCC-cccceeeccccCCcEEEEecCCceEEEEeCCCcEEEeeeCCCCCcccC
Q 014382 239 WRHTISVSSSGRLYSYGWSKYGQLGHGDFKD-HLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVG 317 (425)
Q Consensus 239 ~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~-~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqLG~~ 317 (425)
..|+++-++ -.||+||.| .||||..+... ...|..+.. ....|..++|...-++++++++.+|++-+-....+.
T Consensus 294 ~~hsVawt~-~~VY~wGlN-~GQlGi~~n~~~Vt~Pr~l~~-~~~~v~~v~a~~~ATVc~~~~~~i~~~ady~~~k~~-- 368 (1267)
T KOG0783|consen 294 KSHSVAWTD-TDVYSWGLN-NGQLGISDNISVVTTPRRLAG-LLSPVIHVVATTRATVCLLQNNSIIAFADYNQVKLP-- 368 (1267)
T ss_pred cceeeeeec-ceEEEeccc-CceecCCCCCceeecchhhcc-cccceEEEEecCccEEEEecCCcEEEEecccceecC--
Confidence 999999994 579999985 59999876544 445655533 335589999999999999999999998764433221
Q ss_pred CCCCcccceEeec----CCCCcEEEEEcCCCeeEEEeCCCCEEEeeCCC
Q 014382 318 DNVDHCSPVQVKF----PLDQKVVQISCGWRHTLAVTERQNVFSWGRGT 362 (425)
Q Consensus 318 ~~~~~~~p~~i~~----~~~~~i~~i~~G~~~~~~l~~~g~vy~wG~n~ 362 (425)
.+....+...+.- ....++++..+...-.++|++-|.||.|=.+.
T Consensus 369 ~n~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~n 417 (1267)
T KOG0783|consen 369 FNVDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKN 417 (1267)
T ss_pred cchhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCC
Confidence 1111111122210 00134556666677789999999999998643
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.91 E-value=1.4e-22 Score=205.44 Aligned_cols=285 Identities=23% Similarity=0.312 Sum_probs=191.6
Q ss_pred CCCCCeEEEeccCCceEEEE--cCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcCCCeEEEEEcCCCEE
Q 014382 16 APFRPVLLISAGASHSVALL--SGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQV 93 (425)
Q Consensus 16 ~~~~~i~~i~~g~~~~~~l~--~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~~g~v 93 (425)
+.+.+|++|+.|-+...++. .+|-++.-|+... .....++...+..+|+.+.....-.-.+.++ |++
T Consensus 522 ~l~~~IVq~SVG~D~~~~~~~A~~G~I~~v~D~k~----------~~~~Rr~~P~n~rKIv~v~~s~~VY~~vSen-Gki 590 (3738)
T KOG1428|consen 522 CLPEPIVQISVGIDTIMFRSGAGHGWIASVDDKKR----------NGRLRRLVPSNRRKIVHVCASGHVYGYVSEN-GKI 590 (3738)
T ss_pred cCCCceEEEEeccchhheeeccCcceEEeccCccc----------ccchhhcCCCCcceeEEEeeeeEEEEEEccC-CeE
Confidence 44589999999988888876 5565655553221 1111222222334677775544444556666 999
Q ss_pred EEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeCCCEEEEEEcCCCEEEEeCCCCCccCCCCCCCccc-cee---
Q 014382 94 YSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLV-PQK--- 169 (425)
Q Consensus 94 ~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~-p~~--- 169 (425)
|..|....- .......+..+.+.-|.+++.|..|.++++.+|+||.||-|+.+|+|+-.+..... |..
T Consensus 591 fM~G~~tm~--------~n~SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~ 662 (3738)
T KOG1428|consen 591 FMGGLHTMR--------VNVSSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGR 662 (3738)
T ss_pred EeecceeEE--------ecchHHHhhccccceeehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccc
Confidence 999854321 11233445667788899999999999999999999999999999999754332111 110
Q ss_pred ----eec------cCCceEEEEEeCCCeEEEE------ecCCcEEEeeCCCCCCC--CC------CCC------------
Q 014382 170 ----LQA------FEGVSIKMVAAGAEHSVAV------AEDGELYGWGWGRYGNL--GL------GDR------------ 213 (425)
Q Consensus 170 ----~~~------~~~~~i~~i~~G~~~~~~L------~~~g~vy~~G~n~~gql--g~------~~~------------ 213 (425)
+-+ +.+...+-..||.....-. .-.|.+-.+|.++.+.+ |. ..+
T Consensus 663 ~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~ 742 (3738)
T KOG1428|consen 663 QEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQF 742 (3738)
T ss_pred eeecccCCccceeecCCcchhhhcccccccccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhhee
Confidence 000 0011222222332211100 12456666666554432 11 111
Q ss_pred -------CCCcceeeeee-eecCCCeEEEEEecCceEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcEE
Q 014382 214 -------NDRLIPEKVAT-VDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFIS 285 (425)
Q Consensus 214 -------~~~~~p~~v~~-~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~ 285 (425)
.....|.++.. -...+.++.+|+||..|+++|.+|++||.||.|.+||||+++......|.++..+++..|+
T Consensus 743 ~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~v 822 (3738)
T KOG1428|consen 743 SSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVIV 822 (3738)
T ss_pred cccccccccccCchheeeccCCcceeEEEEeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEcCCCCceE
Confidence 00112222211 1123458999999999999999999999999999999999999999999999999998899
Q ss_pred EEecCCceEEEEeCCCcEEEeeeCCCCCcccCCC
Q 014382 286 QISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDN 319 (425)
Q Consensus 286 ~i~~G~~~~~~lt~~g~v~~wG~n~~gqLG~~~~ 319 (425)
+|++|.+|++++..||.||.||.-..|||+..-.
T Consensus 823 QVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~~ 856 (3738)
T KOG1428|consen 823 QVAAGSNHTILRANDGSVFTFGAFGKGQLARPAG 856 (3738)
T ss_pred EEecCCCceEEEecCCcEEEeccccCccccCccc
Confidence 9999999999999999999999999999997543
No 9
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.27 E-value=4.9e-12 Score=85.35 Aligned_cols=50 Identities=46% Similarity=0.922 Sum_probs=47.1
Q ss_pred CCcEEEeeeCCCCCcc-cCCCCCcccceEeecCCCCcEEEEEcCCCeeEEE
Q 014382 300 DGKLYGWGWNKFGQVG-VGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAV 349 (425)
Q Consensus 300 ~g~v~~wG~n~~gqLG-~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~l 349 (425)
||+||+||.|.+|||| .++......|++++.+...+|++|+||.+|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6899999999999999 8888888999999999889999999999999986
No 10
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.25 E-value=7.3e-12 Score=84.50 Aligned_cols=50 Identities=46% Similarity=0.787 Sum_probs=47.1
Q ss_pred CCeEEEEeCCCCCccC-CCCCCCccCCeeecCCCCCcEEEEEcCCCeEEEE
Q 014382 37 GNIVCSWGRGEDGQLG-HGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAY 86 (425)
Q Consensus 37 ~g~v~~wG~n~~gqLG-~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l 86 (425)
||+||+||.|.+|||| .+.......|++++.+.+.+|++|+||..|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 7999999999999999 7777889999999999999999999999999987
No 11
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.14 E-value=5.8e-11 Score=69.65 Aligned_cols=30 Identities=50% Similarity=0.870 Sum_probs=26.1
Q ss_pred EEEEEcCCCeeEEEeCCCCEEEeeCCCCCc
Q 014382 336 VVQISCGWRHTLAVTERQNVFSWGRGTNGQ 365 (425)
Q Consensus 336 i~~i~~G~~~~~~l~~~g~vy~wG~n~~gq 365 (425)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 689999999999999999999999999998
No 12
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=5.1e-13 Score=133.07 Aligned_cols=191 Identities=24% Similarity=0.457 Sum_probs=147.3
Q ss_pred CCeeecCCCCCcEEEEEcCCCeEEEEEcCCCEEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeCCCEEEEEE
Q 014382 61 SPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVT 140 (425)
Q Consensus 61 ~p~~v~~~~~~~i~~i~~G~~~~~~lt~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~~lt 140 (425)
.|.++..+....+.++.||..|+++++.. |++|+||.|.+||+|++.......|.+++.+.+.+..+|++|..|+++++
T Consensus 4 ~~~~~~~l~~k~~lq~~cGn~hclal~~~-g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS 82 (850)
T KOG0941|consen 4 APRLVLILNYKHILQVGCGNNHCLALSCA-GELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALS 82 (850)
T ss_pred hhHHHHHHhhhhhhhhccccHHHHhhhcc-CCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhh
Confidence 35555555666799999999999999999 99999999999999998654444599999999999999999999999998
Q ss_pred cCCCEEEEeCCCCCccCCCCCCCcccceeeeccCCceEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCccee
Q 014382 141 VEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPE 220 (425)
Q Consensus 141 ~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~ 220 (425)
. |+++|+.+|.++.+|....+|+++........|.
T Consensus 83 ~---------------------------------------------~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~~~ 117 (850)
T KOG0941|consen 83 S---------------------------------------------HTVLLTDEGKVFSFGAGSTGQLGHSLTENEVLPL 117 (850)
T ss_pred h---------------------------------------------chhhcchhccccccCCcccccccccccccccccH
Confidence 6 9999999999999999999999996666666666
Q ss_pred eeeeeecCCCeEEEEEecCceEEEEe-cCCCEEEecCCCCCcCCCCCCCCcccceeecc---ccCCcEEEEecCCceEEE
Q 014382 221 KVATVDLQREKMVMVACGWRHTISVS-SSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEA---LRESFISQISGGWRHTMA 296 (425)
Q Consensus 221 ~v~~~~~~~~~i~~i~~g~~~~~~lt-~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~---~~~~~i~~i~~G~~~~~~ 296 (425)
.+.... ...+..|+|+..|+.++- .-|++|.+|.+..|. +.......+.+... -....+..+..|.+.++.
T Consensus 118 ~v~e~i--~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sGk---~~i~s~s~~~~l~~~d~~~~~~~~~~~~g~dq~~~ 192 (850)
T KOG0941|consen 118 LVLELI--GSRVTRIACVRGHTLAIVPRLGQSFSFGKGASGK---GVIVSLSGEDLLRDHDSEKDHRCSLAFAGGDQTFS 192 (850)
T ss_pred HHHHHH--hhhhHHHHHHHHHHHhhhhhhcceeecccCCCCC---ceeeccchhhhcccccHHHHHHHHHHhcCCCceEE
Confidence 655433 678999999999998765 459999999988771 11111111111111 111235567788888887
Q ss_pred EeCCCc
Q 014382 297 VTSDGK 302 (425)
Q Consensus 297 lt~~g~ 302 (425)
+...++
T Consensus 193 l~~~~~ 198 (850)
T KOG0941|consen 193 LSSKGE 198 (850)
T ss_pred EEeecc
Confidence 766644
No 13
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.10 E-value=1.2e-10 Score=68.31 Aligned_cols=30 Identities=53% Similarity=0.887 Sum_probs=26.0
Q ss_pred EEEEecCCceEEEEeCCCcEEEeeeCCCCC
Q 014382 284 ISQISGGWRHTMAVTSDGKLYGWGWNKFGQ 313 (425)
Q Consensus 284 i~~i~~G~~~~~~lt~~g~v~~wG~n~~gq 313 (425)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 689999999999999999999999999997
No 14
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.1e-12 Score=130.72 Aligned_cols=151 Identities=32% Similarity=0.591 Sum_probs=134.0
Q ss_pred ceeecccCCCCEEEEEeCCCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeeccCCceEEEEEeCCCeEEEEecC
Q 014382 115 PLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAED 194 (425)
Q Consensus 115 p~~v~~~~~~~i~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~L~~~ 194 (425)
|..+..+.-.+|.+++||+.|+++++..|++++||.|.+||+|.+.......|.+++++.+.+..+|++|.+|++++..
T Consensus 5 ~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~- 83 (850)
T KOG0941|consen 5 PRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSS- 83 (850)
T ss_pred hHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhh-
Confidence 3444445556899999999999999999999999999999999996555555999999999999999999999999986
Q ss_pred CcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEecCceEEEEecCCCEEEecCCCCCcCCCCCCCCcccce
Q 014382 195 GELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPC 274 (425)
Q Consensus 195 g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~ 274 (425)
|+++++..|.++.+|....+|+++........|.
T Consensus 84 ----------------------------------------------~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~~~ 117 (850)
T KOG0941|consen 84 ----------------------------------------------HTVLLTDEGKVFSFGAGSTGQLGHSLTENEVLPL 117 (850)
T ss_pred ----------------------------------------------chhhcchhccccccCCcccccccccccccccccH
Confidence 8999999999999999999999998778888898
Q ss_pred eeccccCCcEEEEecCCceEEEE-eCCCcEEEeeeCCCC
Q 014382 275 QLEALRESFISQISGGWRHTMAV-TSDGKLYGWGWNKFG 312 (425)
Q Consensus 275 ~v~~~~~~~i~~i~~G~~~~~~l-t~~g~v~~wG~n~~g 312 (425)
.+..+-...+.+|+||..|+++. ..-|++|.+|.+..|
T Consensus 118 ~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sG 156 (850)
T KOG0941|consen 118 LVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASG 156 (850)
T ss_pred HHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCC
Confidence 88888888899999999999885 456999999998876
No 15
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=96.09 E-value=0.11 Score=57.55 Aligned_cols=111 Identities=17% Similarity=0.163 Sum_probs=70.9
Q ss_pred CCeEEEEEe-cCceEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcEEEEecCCceE-EEEeCCCcEEEe
Q 014382 229 REKMVMVAC-GWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHT-MAVTSDGKLYGW 306 (425)
Q Consensus 229 ~~~i~~i~~-g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~-~~lt~~g~v~~w 306 (425)
+..|..++. +.++.++|+++|+|-..= .-+ ...|.....+.+ .|++|+.=..|. +|++.+|++|..
T Consensus 702 ~~~i~a~Avv~~~~fvald~qg~lt~h~--k~g---------~p~~l~~~gl~G-~ik~l~lD~~~nL~Alt~~G~Lf~~ 769 (1774)
T PF11725_consen 702 DRVITAFAVVNDNKFVALDDQGDLTAHQ--KPG---------RPVPLSRPGLSG-EIKDLALDEKQNLYALTSTGELFRL 769 (1774)
T ss_pred cCcceeEEEEcCCceEEeccCCcccccc--CCC---------CCccCCCCCCCc-chhheeeccccceeEecCCCceeec
Confidence 556666654 678899999999987642 111 122222233433 399999877755 579999999974
Q ss_pred eeCCCCCcccCCCCCcccceEeecCCCCcEEEEEcCCCeeEEEeCC
Q 014382 307 GWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTER 352 (425)
Q Consensus 307 G~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~l~~~ 352 (425)
=.-.+-+.- ........+.++.+|.+.+|..+....+|.+.+.-+
T Consensus 770 ~k~~WQ~~~-~~~~~~~~W~~v~lP~~~~v~~l~~~~~~~l~~~~~ 814 (1774)
T PF11725_consen 770 PKEAWQGNA-EGDQMAAKWQKVALPDEQPVKSLRTNDDNHLSAQIE 814 (1774)
T ss_pred CHHHhhCcc-cCCccccCceeccCCCCCchhhhhcCCCCceEEEec
Confidence 332221111 111222567777788889999999999998877743
No 16
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=95.78 E-value=0.65 Score=46.11 Aligned_cols=157 Identities=17% Similarity=0.138 Sum_probs=91.7
Q ss_pred eCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCc-ceeeeeeeecCCCeEEEEEecC-ceEEEEecCCCEE-EecCCCC
Q 014382 183 AGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRL-IPEKVATVDLQREKMVMVACGW-RHTISVSSSGRLY-SYGWSKY 259 (425)
Q Consensus 183 ~G~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~-~p~~v~~~~~~~~~i~~i~~g~-~~~~~lt~~G~vy-~~G~n~~ 259 (425)
.|.....+|..+|++|. +-|.......- .-+.+.. ..++..|++|. .-..+++++|.|+ -.|-...
T Consensus 190 ~g~~~awAI~s~Gd~y~-------RtGvs~~~P~GraW~~i~~----~t~L~qISagPtg~VwAvt~nG~vf~R~GVsRq 258 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYL-------RTGVSVDRPCGRAWKVICP----YTDLSQISAGPTGVVWAVTENGAVFYREGVSRQ 258 (705)
T ss_pred CCceEEEEEecCCcEEE-------eccccCCCCCCceeeecCC----CCccceEeecCcceEEEEeeCCcEEEEeccccc
Confidence 56667788899999984 22222221111 1111211 23689999999 6778999999976 4676666
Q ss_pred CcCCCCCCCCcccceeeccccCCcEEEEecCCceEEEEeCCCcEEEe-eeCCCCCcccCCCCCc-ccceEeecCCCCcEE
Q 014382 260 GQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGW-GWNKFGQVGVGDNVDH-CSPVQVKFPLDQKVV 337 (425)
Q Consensus 260 gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~v~~w-G~n~~gqLG~~~~~~~-~~p~~i~~~~~~~i~ 337 (425)
.+.|..-. +...|..... ++.|+.|....-+||.+|.+|.- |.-...-+|....... ..-..+........+
T Consensus 259 Np~GdsWk-dI~tP~~a~~-----~v~iSvGt~t~Waldndg~lwfrrgii~~kpeg~h~~e~~~s~~~~v~tdq~isf~ 332 (705)
T KOG3669|consen 259 NPEGDSWK-DIVTPRQALE-----PVCISVGTQTLWALDNDGNLWFRRGIISKKPEGDHDHEWQVSITDYVVTDQCISFQ 332 (705)
T ss_pred CCCCchhh-hccCcccccc-----eEEEEeccceEEEEecCCcEEEEecccccCcccccccccccccccceEEecceeeE
Confidence 55554322 3333433322 89999999999999999999864 2222221222221111 111222233445566
Q ss_pred EEEcCCCeeEEEeCCCCEEE
Q 014382 338 QISCGWRHTLAVTERQNVFS 357 (425)
Q Consensus 338 ~i~~G~~~~~~l~~~g~vy~ 357 (425)
.|+.+ +|++++...+.+|.
T Consensus 333 SV~~n-dqVfaisa~~~i~~ 351 (705)
T KOG3669|consen 333 SVIHN-DQVFAISAQAKIEV 351 (705)
T ss_pred EEEec-ceEEEEecccceee
Confidence 77776 47777777776654
No 17
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=94.65 E-value=1.1 Score=50.16 Aligned_cols=70 Identities=21% Similarity=0.323 Sum_probs=47.2
Q ss_pred eccccCCcEEEEe-cCCceEEEEeCCCcEEEeeeCCCCCcccCCCCCcccceEeecC-CCCcEEEEEcCCCe-eEEEeCC
Q 014382 276 LEALRESFISQIS-GGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFP-LDQKVVQISCGWRH-TLAVTER 352 (425)
Q Consensus 276 v~~~~~~~i~~i~-~G~~~~~~lt~~g~v~~wG~n~~gqLG~~~~~~~~~p~~i~~~-~~~~i~~i~~G~~~-~~~l~~~ 352 (425)
++.+.+..|+.++ .+.++.++|++.|++-..= . .-.|+.+..+ ....|.+++.-..| .+|++.+
T Consensus 697 l~Gl~~~~i~a~Avv~~~~fvald~qg~lt~h~--k-----------~g~p~~l~~~gl~G~ik~l~lD~~~nL~Alt~~ 763 (1774)
T PF11725_consen 697 LEGLEDRVITAFAVVNDNKFVALDDQGDLTAHQ--K-----------PGRPVPLSRPGLSGEIKDLALDEKQNLYALTST 763 (1774)
T ss_pred ccCCCcCcceeEEEEcCCceEEeccCCcccccc--C-----------CCCCccCCCCCCCcchhheeeccccceeEecCC
Confidence 4455566677665 4778899999999887532 1 1124444322 13578899987774 5699999
Q ss_pred CCEEEe
Q 014382 353 QNVFSW 358 (425)
Q Consensus 353 g~vy~w 358 (425)
|++|.-
T Consensus 764 G~Lf~~ 769 (1774)
T PF11725_consen 764 GELFRL 769 (1774)
T ss_pred Cceeec
Confidence 999974
No 18
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=94.59 E-value=5.6 Score=39.84 Aligned_cols=108 Identities=18% Similarity=0.147 Sum_probs=65.1
Q ss_pred ccCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcCC-CeEEEEEcCCCEEEE-EeCCCCCC
Q 014382 26 AGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGA-DHTTAYSESCMQVYS-WGWGDFGR 103 (425)
Q Consensus 26 ~g~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~-~~~~~lt~~~g~v~~-wG~n~~g~ 103 (425)
.|.....+|..+|.+|. +-|.....++..--++.... ..+.+|+.|. .-..+|+.+ |.||. -|-..+.+
T Consensus 190 ~g~~~awAI~s~Gd~y~-------RtGvs~~~P~GraW~~i~~~-t~L~qISagPtg~VwAvt~n-G~vf~R~GVsRqNp 260 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYL-------RTGVSVDRPCGRAWKVICPY-TDLSQISAGPTGVVWAVTEN-GAVFYREGVSRQNP 260 (705)
T ss_pred CCceEEEEEecCCcEEE-------eccccCCCCCCceeeecCCC-CccceEeecCcceEEEEeeC-CcEEEEecccccCC
Confidence 34556667888888883 22222222222222221111 1588999998 677889999 77654 45444444
Q ss_pred CCCCCCCCcccceeecccCCCCEEEEEeCCCEEEEEEcCCCEEEE
Q 014382 104 LGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSW 148 (425)
Q Consensus 104 lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~~lt~~G~vy~~ 148 (425)
.|..-. +...|. ..+ .++.|+.|.....+||++|++|.=
T Consensus 261 ~GdsWk-dI~tP~--~a~---~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 261 EGDSWK-DIVTPR--QAL---EPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred CCchhh-hccCcc--ccc---ceEEEEeccceEEEEecCCcEEEE
Confidence 443222 222332 221 399999999999999999999864
No 19
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=93.54 E-value=1.2 Score=40.14 Aligned_cols=58 Identities=17% Similarity=0.279 Sum_probs=30.2
Q ss_pred EEEEcCCeEEEEe-CCC-CCccCCCC----CCCc-cCCeeecCCCCCcEEEEEcCCCeEEEEEcCCCEEEEEeC
Q 014382 32 VALLSGNIVCSWG-RGE-DGQLGHGD----AEDR-LSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGW 98 (425)
Q Consensus 32 ~~l~~~g~v~~wG-~n~-~gqLG~~~----~~~~-~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~~g~v~~wG~ 98 (425)
.++.-++++|+|| .|+ .|....-. .... .+|..-..+++. -..|+..+..+ .+|++|.
T Consensus 83 tvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPga-------RDGHsAcV~gn--~MyiFGG 147 (392)
T KOG4693|consen 83 TVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGA-------RDGHSACVWGN--QMYIFGG 147 (392)
T ss_pred eEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCc-------cCCceeeEECc--EEEEecC
Confidence 3455678899998 443 23322110 1112 223222223321 25677777764 8999983
No 20
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=90.53 E-value=18 Score=35.28 Aligned_cols=159 Identities=16% Similarity=0.135 Sum_probs=78.7
Q ss_pred CEEEEEeCC--CEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeeccCCceEEEEEeCCCeEEEEe--cCCcEEEe
Q 014382 125 RVKQIACGD--SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVA--EDGELYGW 200 (425)
Q Consensus 125 ~i~~v~~G~--~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~L~--~~g~vy~~ 200 (425)
++..+++.. .+.++=+..|++|.|--++.--|.. ...+ -..|..+....+-+++++ +||.|.+|
T Consensus 83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v----------~~aH--YQ~ITcL~fs~dgs~iiTgskDg~V~vW 150 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTISGNLYLWELSSGILLNV----------LSAH--YQSITCLKFSDDGSHIITGSKDGAVLVW 150 (476)
T ss_pred ceeeeecCCCceEEEeecccCcEEEEEeccccHHHH----------HHhh--ccceeEEEEeCCCcEEEecCCCccEEEE
Confidence 455565544 3344445899999996544211100 0011 234566655555555554 68999999
Q ss_pred eCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEecCceEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeecccc
Q 014382 201 GWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALR 280 (425)
Q Consensus 201 G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~ 280 (425)
=.-+ +-+......|.++..+..-...|+++.+|.-- .+.+||+-+...--.+ .+......-..+..+.
T Consensus 151 ~l~~-----lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg-----~~~rl~TaS~D~t~k~--wdlS~g~LLlti~fp~ 218 (476)
T KOG0646|consen 151 LLTD-----LVSADNDHSVKPLHIFSDHTLSITDLQIGSGG-----TNARLYTASEDRTIKL--WDLSLGVLLLTITFPS 218 (476)
T ss_pred EEEe-----ecccccCCCccceeeeccCcceeEEEEecCCC-----ccceEEEecCCceEEE--EEeccceeeEEEecCC
Confidence 6322 11222223555555555556678888887653 1233333221110000 0000001112222222
Q ss_pred CCcEEEEecCCceEEEEeCCCcEEEee
Q 014382 281 ESFISQISGGWRHTMAVTSDGKLYGWG 307 (425)
Q Consensus 281 ~~~i~~i~~G~~~~~~lt~~g~v~~wG 307 (425)
.....-+.-+..++++=+++|++|..=
T Consensus 219 si~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 219 SIKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred cceeEEEcccccEEEecCCcceEEeee
Confidence 222444556777888888999998743
No 21
>PHA03098 kelch-like protein; Provisional
Probab=88.88 E-value=26 Score=35.80 Aligned_cols=15 Identities=13% Similarity=0.151 Sum_probs=11.1
Q ss_pred EEEEcCCeEEEEeCC
Q 014382 32 VALLSGNIVCSWGRG 46 (425)
Q Consensus 32 ~~l~~~g~v~~wG~n 46 (425)
.++.-++.+|+.|-.
T Consensus 289 ~~~~~~~~lyv~GG~ 303 (534)
T PHA03098 289 GSVVLNNVIYFIGGM 303 (534)
T ss_pred eEEEECCEEEEECCC
Confidence 455677899999943
No 22
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=88.18 E-value=19 Score=32.38 Aligned_cols=67 Identities=18% Similarity=0.416 Sum_probs=40.1
Q ss_pred CEEEEEeC--CCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeeccCCceEEEEEeCCCe--EEEEecCCcEEEe
Q 014382 125 RVKQIACG--DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEH--SVAVAEDGELYGW 200 (425)
Q Consensus 125 ~i~~v~~G--~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~--~~~L~~~g~vy~~ 200 (425)
.|..|... ..+.+.-+.+|+|++|--... .-.....|.. ...|.+++...+- .++.++.|++|+|
T Consensus 126 pVn~vvlhpnQteLis~dqsg~irvWDl~~~------~c~~~liPe~-----~~~i~sl~v~~dgsml~a~nnkG~cyvW 194 (311)
T KOG0315|consen 126 PVNTVVLHPNQTELISGDQSGNIRVWDLGEN------SCTHELIPED-----DTSIQSLTVMPDGSMLAAANNKGNCYVW 194 (311)
T ss_pred CcceEEecCCcceEEeecCCCcEEEEEccCC------ccccccCCCC-----CcceeeEEEcCCCcEEEEecCCccEEEE
Confidence 44455444 455666678899999964221 1112222222 2456666666554 4677889999999
Q ss_pred eC
Q 014382 201 GW 202 (425)
Q Consensus 201 G~ 202 (425)
-.
T Consensus 195 ~l 196 (311)
T KOG0315|consen 195 RL 196 (311)
T ss_pred Ec
Confidence 63
No 23
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=87.39 E-value=22 Score=32.07 Aligned_cols=164 Identities=15% Similarity=0.241 Sum_probs=80.2
Q ss_pred cceeecccCC--CCEEEEEe--CCCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeeccCCceEEEE--EeCCCe
Q 014382 114 TPLPIKALHS--LRVKQIAC--GDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMV--AAGAEH 187 (425)
Q Consensus 114 ~p~~v~~~~~--~~i~~v~~--G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i--~~G~~~ 187 (425)
.|.|+..+.+ .+|..|.. -....+-=.+||.+-+|---. .++ +...... .+|..| .--..+
T Consensus 72 np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~-~~~----------qR~~~~~--spVn~vvlhpnQte 138 (311)
T KOG0315|consen 72 NPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS-LSC----------QRNYQHN--SPVNTVVLHPNQTE 138 (311)
T ss_pred CCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccC-ccc----------chhccCC--CCcceEEecCCcce
Confidence 3444444332 35555544 334444556789999996322 000 1111111 123333 333455
Q ss_pred EEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEecCceE--EEEecCCCEEEecCCCCCcCCCC
Q 014382 188 SVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHT--ISVSSSGRLYSYGWSKYGQLGHG 265 (425)
Q Consensus 188 ~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~g~~~~--~~lt~~G~vy~~G~n~~gqlg~~ 265 (425)
.+.=+.+|.|++|-... ........|.. ...|.+++...+-+ ++.++.|+.|+|-.-. .
T Consensus 139 Lis~dqsg~irvWDl~~------~~c~~~liPe~-------~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~------~ 199 (311)
T KOG0315|consen 139 LISGDQSGNIRVWDLGE------NSCTHELIPED-------DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLN------H 199 (311)
T ss_pred EEeecCCCcEEEEEccC------CccccccCCCC-------CcceeeEEEcCCCcEEEEecCCccEEEEEccC------C
Confidence 56667889999996322 22222233322 24667776666544 5677889999997533 1
Q ss_pred CCCCcccceeeccccCCcEEEE--ecCCceEEEEeCCCcEEEeeeC
Q 014382 266 DFKDHLVPCQLEALRESFISQI--SGGWRHTMAVTSDGKLYGWGWN 309 (425)
Q Consensus 266 ~~~~~~~p~~v~~~~~~~i~~i--~~G~~~~~~lt~~g~v~~wG~n 309 (425)
.......|..--...+..|.+. +-...|.+.-..+-+|++|-..
T Consensus 200 ~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~ 245 (311)
T KOG0315|consen 200 QTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTD 245 (311)
T ss_pred CccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecC
Confidence 1122223322111112223332 3333444445566677777543
No 24
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=87.12 E-value=23 Score=32.42 Aligned_cols=142 Identities=18% Similarity=0.139 Sum_probs=69.0
Q ss_pred cCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcCCCeEEEEEcCCCEEEEEeCC-CCCCCC
Q 014382 27 GASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWG-DFGRLG 105 (425)
Q Consensus 27 g~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~~g~v~~wG~n-~~g~lg 105 (425)
+.-+-++...||.||.-+ .-.+.+|+=+.. .-+-.++..-.+..- |.+++-.| |..|++-.. ..++++
T Consensus 62 ~ap~dvapapdG~VWft~-qg~gaiGhLdP~-tGev~~ypLg~Ga~P--------hgiv~gpd-g~~Witd~~~aI~R~d 130 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTA-QGTGAIGHLDPA-TGEVETYPLGSGASP--------HGIVVGPD-GSAWITDTGLAIGRLD 130 (353)
T ss_pred CCccccccCCCCceEEec-CccccceecCCC-CCceEEEecCCCCCC--------ceEEECCC-CCeeEecCcceeEEec
Confidence 455777888999999444 334455532111 111122222222222 44455555 556655322 223333
Q ss_pred CCCCCCcccceeecccCCCCEEEEEeCCCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeeccCCceEEEE-EeC
Q 014382 106 HGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMV-AAG 184 (425)
Q Consensus 106 ~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i-~~G 184 (425)
..+-.-...|.+ .+..-++-.+.+++.+|+||.-|.+. ..|.-+..... + +|-.. .-+
T Consensus 131 pkt~evt~f~lp---------~~~a~~nlet~vfD~~G~lWFt~q~G--~yGrLdPa~~~----i------~vfpaPqG~ 189 (353)
T COG4257 131 PKTLEVTRFPLP---------LEHADANLETAVFDPWGNLWFTGQIG--AYGRLDPARNV----I------SVFPAPQGG 189 (353)
T ss_pred CcccceEEeecc---------cccCCCcccceeeCCCccEEEeeccc--cceecCcccCc----e------eeeccCCCC
Confidence 222111112222 33344556788999999999998743 23321211100 0 01111 123
Q ss_pred CCeEEEEecCCcEEEe
Q 014382 185 AEHSVAVAEDGELYGW 200 (425)
Q Consensus 185 ~~~~~~L~~~g~vy~~ 200 (425)
.-.-++.|-||+||.-
T Consensus 190 gpyGi~atpdGsvwya 205 (353)
T COG4257 190 GPYGICATPDGSVWYA 205 (353)
T ss_pred CCcceEECCCCcEEEE
Confidence 4556889999999976
No 25
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=86.27 E-value=23 Score=31.32 Aligned_cols=109 Identities=12% Similarity=0.118 Sum_probs=54.6
Q ss_pred CCCeEEEeccC--CceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcCCC--eEEEEEcCCCEE
Q 014382 18 FRPVLLISAGA--SHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD--HTTAYSESCMQV 93 (425)
Q Consensus 18 ~~~i~~i~~g~--~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~--~~~~lt~~~g~v 93 (425)
..+|..++... ...++...+|.++.|-..... ....+... ...+..+..... ..++...+ |.|
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-----------~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~~-~~i 75 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-----------LLRTLKGH-TGPVRDVAASADGTYLASGSSD-KTI 75 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC-----------cEEEEecC-CcceeEEEECCCCCEEEEEcCC-CeE
Confidence 35677777655 334444468999999654321 11111111 123434443332 34444456 999
Q ss_pred EEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeCCC-EEEEEEc-CCCEEEEeCC
Q 014382 94 YSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDS-HCLAVTV-EGEVQSWGRN 151 (425)
Q Consensus 94 ~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~-~~~~lt~-~G~vy~~G~n 151 (425)
+.|-..... ....+. .....|..+..... ..++... +|.|+.|-..
T Consensus 76 ~i~~~~~~~-----------~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (289)
T cd00200 76 RLWDLETGE-----------CVRTLT-GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE 123 (289)
T ss_pred EEEEcCccc-----------ceEEEe-ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECC
Confidence 999643310 111111 11224666665543 3444444 8999999654
No 26
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=85.28 E-value=29 Score=31.57 Aligned_cols=63 Identities=22% Similarity=0.325 Sum_probs=32.0
Q ss_pred CCeEEEEEcCCCEEEEEeC-CC-CCCCCCCCCCCcccceeec-ccCCCCEEEEE--eCCCEEEEEEcCCCEEEEeC
Q 014382 80 ADHTTAYSESCMQVYSWGW-GD-FGRLGHGNSSDLFTPLPIK-ALHSLRVKQIA--CGDSHCLAVTVEGEVQSWGR 150 (425)
Q Consensus 80 ~~~~~~lt~~~g~v~~wG~-n~-~g~lg~~~~~~~~~p~~v~-~~~~~~i~~v~--~G~~~~~~lt~~G~vy~~G~ 150 (425)
..|+.+.-+| ++|+||. |+ .|.+.. .+...+-. .....+|.-.. +-+.|++++- ....|++|-
T Consensus 80 YGHtvV~y~d--~~yvWGGRND~egaCN~-----Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~-gn~MyiFGG 147 (392)
T KOG4693|consen 80 YGHTVVEYQD--KAYVWGGRNDDEGACNL-----LYEFDPETNVWKKPEVEGFVPGARDGHSACVW-GNQMYIFGG 147 (392)
T ss_pred cCceEEEEcc--eEEEEcCccCcccccce-----eeeeccccccccccceeeecCCccCCceeeEE-CcEEEEecC
Confidence 4578877765 8999983 33 222211 11111100 01112333333 3358887775 556899984
No 27
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=84.42 E-value=30 Score=31.06 Aligned_cols=80 Identities=19% Similarity=0.318 Sum_probs=43.3
Q ss_pred CceEEEEEeCCCeEEEEecCCcEEEeeCCCCCC-CCCCCCCCCcceeeeeeeecCCCeEEEEEecCceEEEEecCCCEEE
Q 014382 175 GVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGN-LGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYS 253 (425)
Q Consensus 175 ~~~i~~i~~G~~~~~~L~~~g~vy~~G~n~~gq-lg~~~~~~~~~p~~v~~~~~~~~~i~~i~~g~~~~~~lt~~G~vy~ 253 (425)
+.+|-.++.-+.|.+ ..-+|.||.|-+++.-. ++....-....|..+...+.+..+...+.-..+..+.-.-|+.+|+
T Consensus 62 dgpiy~~~f~d~~Ll-s~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~ 140 (325)
T KOG0649|consen 62 DGPIYYLAFHDDFLL-SGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQ 140 (325)
T ss_pred CCCeeeeeeehhhee-eccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEE
Confidence 346666766666543 34569999999998755 5544444444555543333223333333333333333345666776
Q ss_pred ec
Q 014382 254 YG 255 (425)
Q Consensus 254 ~G 255 (425)
|-
T Consensus 141 ~d 142 (325)
T KOG0649|consen 141 VD 142 (325)
T ss_pred EE
Confidence 64
No 28
>PLN02153 epithiospecifier protein
Probab=83.40 E-value=43 Score=31.95 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=12.2
Q ss_pred CCeEEEEecCCcEEEeeC
Q 014382 185 AEHSVAVAEDGELYGWGW 202 (425)
Q Consensus 185 ~~~~~~L~~~g~vy~~G~ 202 (425)
..|++++. ++++|++|-
T Consensus 129 ~~~~~~~~-~~~iyv~GG 145 (341)
T PLN02153 129 TFHSMASD-ENHVYVFGG 145 (341)
T ss_pred eeeEEEEE-CCEEEEECC
Confidence 36666655 678999984
No 29
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=83.09 E-value=65 Score=33.80 Aligned_cols=250 Identities=18% Similarity=0.169 Sum_probs=126.6
Q ss_pred CCCCCeEEEeccCC--ceEEEEcCCeEEEEeCCCCCccCCCCCC-CccCCeeecCCCCCcEEEEEcCCCeEEEEE--cCC
Q 014382 16 APFRPVLLISAGAS--HSVALLSGNIVCSWGRGEDGQLGHGDAE-DRLSPTQLSALDGHEIVSVTCGADHTTAYS--ESC 90 (425)
Q Consensus 16 ~~~~~i~~i~~g~~--~~~~l~~~g~v~~wG~n~~gqLG~~~~~-~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt--~~~ 90 (425)
+...=|.+++.+.. .++++...|.-.++|...-|||..=+=. +...-.+-.... ++..++...+-.++.| +|
T Consensus 295 P~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~--~i~~l~YSpDgq~iaTG~eD- 371 (893)
T KOG0291|consen 295 PDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSD--RITSLAYSPDGQLIATGAED- 371 (893)
T ss_pred CCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccccc--ceeeEEECCCCcEEEeccCC-
Confidence 33444556666644 4556667799999999888888752211 111111111122 4666665555444444 56
Q ss_pred CEEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeCCCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceee
Q 014382 91 MQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKL 170 (425)
Q Consensus 91 g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~ 170 (425)
|+|-+|-....-+ .-+.-+...+....+++.-.+..+..+-||.|-+|--..+-.. .....|.+
T Consensus 372 gKVKvWn~~SgfC----------~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNf-----RTft~P~p- 435 (893)
T KOG0291|consen 372 GKVKVWNTQSGFC----------FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNF-----RTFTSPEP- 435 (893)
T ss_pred CcEEEEeccCceE----------EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccccee-----eeecCCCc-
Confidence 8888885433111 1222233345566777777788888888999999975443111 01112222
Q ss_pred eccCCceEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEecCc---eEEEEec
Q 014382 171 QAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWR---HTISVSS 247 (425)
Q Consensus 171 ~~~~~~~i~~i~~G~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~g~~---~~~~lt~ 247 (425)
++.+| ++.+..|.|.+.|.-+. ..|-.+..+.-++.+|-.|.. +.+...-
T Consensus 436 --------~Qfsc-----vavD~sGelV~AG~~d~--------------F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~ 488 (893)
T KOG0291|consen 436 --------IQFSC-----VAVDPSGELVCAGAQDS--------------FEIFVWSVQTGQLLDILSGHEGPVSGLSFSP 488 (893)
T ss_pred --------eeeeE-----EEEcCCCCEEEeeccce--------------EEEEEEEeecCeeeehhcCCCCcceeeEEcc
Confidence 22222 55666666666663221 111112222334444444433 3334444
Q ss_pred CCCEEEecCCCCCcCCCCC-C--CCcccceeeccccCCcEEEEecC--CceEEEEeCCCcEEEeeeCCCCCccc
Q 014382 248 SGRLYSYGWSKYGQLGHGD-F--KDHLVPCQLEALRESFISQISGG--WRHTMAVTSDGKLYGWGWNKFGQVGV 316 (425)
Q Consensus 248 ~G~vy~~G~n~~gqlg~~~-~--~~~~~p~~v~~~~~~~i~~i~~G--~~~~~~lt~~g~v~~wG~n~~gqLG~ 316 (425)
.|.+.+-|+=++- .-..+ + .....|.++ ..+ +..++.. ..-.++.|-+|++-.|-.+...|.|.
T Consensus 489 ~~~~LaS~SWDkT-VRiW~if~s~~~vEtl~i--~sd--vl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~ 557 (893)
T KOG0291|consen 489 DGSLLASGSWDKT-VRIWDIFSSSGTVETLEI--RSD--VLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGS 557 (893)
T ss_pred ccCeEEeccccce-EEEEEeeccCceeeeEee--ccc--eeEEEEcCCCCeEEEEEecceEEEEEhhhceeecc
Confidence 5544443321100 00000 0 001112222 222 5555544 66778889999999999998888854
No 30
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.87 E-value=55 Score=36.56 Aligned_cols=217 Identities=18% Similarity=0.193 Sum_probs=103.5
Q ss_pred EEEEEcCCCEEEEEeCCCCCCCCCCCCC--CcccceeecccCCCCEEEEEeCCCEEEEEEcCCCEEEEeCCCCC-ccCCC
Q 014382 83 TTAYSESCMQVYSWGWGDFGRLGHGNSS--DLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNG-QLGLG 159 (425)
Q Consensus 83 ~~~lt~~~g~v~~wG~n~~g~lg~~~~~--~~~~p~~v~~~~~~~i~~v~~G~~~~~~lt~~G~vy~~G~n~~g-qlg~~ 159 (425)
-+.+|-| .+||.|-.++.+++-.-+.. ....-..++.-.+..+-. =.|.++|.+.-+|+..|-...- ..+..
T Consensus 92 RaWiTiD-n~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~----IqhlLvvaT~~ei~ilgV~~~~~~~~~~ 166 (1311)
T KOG1900|consen 92 RAWITID-NNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPE----IQHLLVVATPVEIVILGVSFDEFTGELS 166 (1311)
T ss_pred ceEEEeC-CeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhh----hheeEEecccceEEEEEEEeccccCccc
Confidence 3678888 99999998886665322211 111111111111211212 2689999999999999843211 11111
Q ss_pred CCCCcccceeeeccCCceEEEEEeCCCeEEEEe-cCCcEEEeeC----CCCCC-C---CCC-CCCCCcceeeeeeeecCC
Q 014382 160 TTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVA-EDGELYGWGW----GRYGN-L---GLG-DRNDRLIPEKVATVDLQR 229 (425)
Q Consensus 160 ~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~L~-~~g~vy~~G~----n~~gq-l---g~~-~~~~~~~p~~v~~~~~~~ 229 (425)
.-... ..-..++..|..|.+-.+.=++++ +||.||-.=. +=+++ + -+. ..-....|..+..+....
T Consensus 167 ~f~~~----~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~ 242 (1311)
T KOG1900|consen 167 IFNTS----FKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSK 242 (1311)
T ss_pred ccccc----eeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCC
Confidence 11110 111233455666665444444444 5556553311 11111 0 000 011223444222221335
Q ss_pred CeEEEEEecCceE--EEEecCCCEEEecCCCCCcCCCCCCCCc---------ccceeeccccCCcEEEEec------CCc
Q 014382 230 EKMVMVACGWRHT--ISVSSSGRLYSYGWSKYGQLGHGDFKDH---------LVPCQLEALRESFISQISG------GWR 292 (425)
Q Consensus 230 ~~i~~i~~g~~~~--~~lt~~G~vy~~G~n~~gqlg~~~~~~~---------~~p~~v~~~~~~~i~~i~~------G~~ 292 (425)
+.|.+|+...... +.+++.|.|-+|=....|+-+.-..... ..-..+....-..|++|+. -+-
T Consensus 243 dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~~~~s~f~~IvsI~~l~~~es~~l 322 (1311)
T KOG1900|consen 243 DPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNPLDDSVFFSIVSISPLSASESNDL 322 (1311)
T ss_pred CcceeeEeccccceeeeeccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccccCCCcccceeEEecccCcccccce
Confidence 6899998887655 4667888876665544444332211000 0000011111123555542 344
Q ss_pred eEEEEeCCC-cEEEeee
Q 014382 293 HTMAVTSDG-KLYGWGW 308 (425)
Q Consensus 293 ~~~~lt~~g-~v~~wG~ 308 (425)
|.+|+|..| ++|.-|.
T Consensus 323 ~LvA~ts~GvRlYfs~s 339 (1311)
T KOG1900|consen 323 HLVAITSTGVRLYFSTS 339 (1311)
T ss_pred eEEEEecCCeEEEEecc
Confidence 888999988 5776554
No 31
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=82.42 E-value=50 Score=32.02 Aligned_cols=67 Identities=10% Similarity=0.141 Sum_probs=37.7
Q ss_pred CeEEEEEecCceEEEEe--cCCCEEEecCCCCCcCCCCCCCCcccceeeccccC-----CcEEEEecCCceEEEE--eCC
Q 014382 230 EKMVMVACGWRHTISVS--SSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRE-----SFISQISGGWRHTMAV--TSD 300 (425)
Q Consensus 230 ~~i~~i~~g~~~~~~lt--~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~-----~~i~~i~~G~~~~~~l--t~~ 300 (425)
.+|.+++-..+.-++|. .+.++..|-.- .+..+....+ .-|.+-..|.+-.++. .+|
T Consensus 396 ~~its~~iS~d~k~~LvnL~~qei~LWDl~--------------e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED 461 (519)
T KOG0293|consen 396 QPITSFSISKDGKLALVNLQDQEIHLWDLE--------------ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSED 461 (519)
T ss_pred CceeEEEEcCCCcEEEEEcccCeeEEeecc--------------hhhHHHHhhcccccceEEEeccCCCCcceEEecCCC
Confidence 46666665554444443 56667777532 1222222211 2266666777766666 589
Q ss_pred CcEEEeeeCC
Q 014382 301 GKLYGWGWNK 310 (425)
Q Consensus 301 g~v~~wG~n~ 310 (425)
++||.|-.-.
T Consensus 462 ~kvyIWhr~s 471 (519)
T KOG0293|consen 462 SKVYIWHRIS 471 (519)
T ss_pred ceEEEEEccC
Confidence 9999997543
No 32
>PHA03098 kelch-like protein; Provisional
Probab=81.61 E-value=66 Score=32.87 Aligned_cols=18 Identities=6% Similarity=0.034 Sum_probs=12.0
Q ss_pred CEEEEEEcCCCEEEEeCCC
Q 014382 134 SHCLAVTVEGEVQSWGRNQ 152 (425)
Q Consensus 134 ~~~~~lt~~G~vy~~G~n~ 152 (425)
.|+++ .-+|+||++|-..
T Consensus 335 ~~~~~-~~~~~lyv~GG~~ 352 (534)
T PHA03098 335 NPGVT-VFNNRIYVIGGIY 352 (534)
T ss_pred cceEE-EECCEEEEEeCCC
Confidence 44444 3479999999643
No 33
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=81.54 E-value=37 Score=29.96 Aligned_cols=106 Identities=16% Similarity=0.221 Sum_probs=50.6
Q ss_pred cEEEEEcCCC-eEEEEEc-CCCEEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeCC-CEEEEEEc-CCCEEE
Q 014382 72 EIVSVTCGAD-HTTAYSE-SCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD-SHCLAVTV-EGEVQS 147 (425)
Q Consensus 72 ~i~~i~~G~~-~~~~lt~-~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~-~~~~~lt~-~G~vy~ 147 (425)
.|..+..... ..++... + |.|+.|-...... ...+. .....|..+.... ...++... +|.|+.
T Consensus 95 ~i~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~-----------~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 161 (289)
T cd00200 95 YVSSVAFSPDGRILSSSSRD-KTIKVWDVETGKC-----------LTTLR-GHTDWVNSVAFSPDGTFVASSSQDGTIKL 161 (289)
T ss_pred cEEEEEEcCCCCEEEEecCC-CeEEEEECCCcEE-----------EEEec-cCCCcEEEEEEcCcCCEEEEEcCCCcEEE
Confidence 4666655443 3344444 5 9999996432110 01111 1122466666655 33344444 899999
Q ss_pred EeCCCCCccCCCCCCCcccceeeeccCCceEEEEEeCCC--eEEEEecCCcEEEeeC
Q 014382 148 WGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAE--HSVAVAEDGELYGWGW 202 (425)
Q Consensus 148 ~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G~~--~~~~L~~~g~vy~~G~ 202 (425)
|-...... ...+. .....|..+..-.+ ..++...+|.|+.|-.
T Consensus 162 ~d~~~~~~-----------~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~ 206 (289)
T cd00200 162 WDLRTGKC-----------VATLT-GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDL 206 (289)
T ss_pred EEcccccc-----------ceeEe-cCccccceEEECCCcCEEEEecCCCcEEEEEC
Confidence 96532100 00111 11223444444333 4455555788888854
No 34
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=81.06 E-value=0.093 Score=55.93 Aligned_cols=132 Identities=18% Similarity=0.224 Sum_probs=87.3
Q ss_pred CEEEEEeCCCEEEEEEcCCCEEEEeCCCCCccCCCCCC--Ccccce-eeeccCCceEEEEEeCCCeEEEEecCCcEEEee
Q 014382 125 RVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTE--DSLVPQ-KLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWG 201 (425)
Q Consensus 125 ~i~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~--~~~~p~-~~~~~~~~~i~~i~~G~~~~~~L~~~g~vy~~G 201 (425)
+++.|.+-.+..++|..+|++|.|-+....-+-..... ...-|. ....+.+.+|+.+++..--.-++|++|.|-+|=
T Consensus 375 ~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlasWl 454 (3015)
T KOG0943|consen 375 KFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLASWL 454 (3015)
T ss_pred eeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhhHH
Confidence 56667666777889999999999987665433332111 111121 122456789999999999999999999999995
Q ss_pred CCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEecCceEEEEecCCCEEEecCCCCCc
Q 014382 202 WGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQ 261 (425)
Q Consensus 202 ~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gq 261 (425)
+ .+|.+-.... ...-+.........+++..|...|.++..+|.-+|-||--.+.+
T Consensus 455 D----EcgagV~fkL-a~ea~Tkieed~~maVqd~~~adhlaAf~~dniihWcGiVPf~e 509 (3015)
T KOG0943|consen 455 D----ECGAGVAFKL-AHEAQTKIEEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPFSE 509 (3015)
T ss_pred h----hhhhhhhhhh-hhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhceeeEEeeeeehh
Confidence 3 2222222111 11111222334667888889999999999999999999644433
No 35
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=80.95 E-value=6.5 Score=35.05 Aligned_cols=29 Identities=34% Similarity=0.452 Sum_probs=24.3
Q ss_pred CcEEEEecCCceEEEEeCCCcEEEeeeCC
Q 014382 282 SFISQISGGWRHTMAVTSDGKLYGWGWNK 310 (425)
Q Consensus 282 ~~i~~i~~G~~~~~~lt~~g~v~~wG~n~ 310 (425)
.++..+.|-.++.+++|++|.+|+|=-..
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKK 41 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 34777889999999999999999996443
No 36
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=80.68 E-value=38 Score=35.05 Aligned_cols=57 Identities=19% Similarity=0.171 Sum_probs=31.8
Q ss_pred EEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEE---EEecCceEEEEecCCCEEEecC
Q 014382 190 AVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVM---VACGWRHTISVSSSGRLYSYGW 256 (425)
Q Consensus 190 ~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~---i~~g~~~~~~lt~~G~vy~~G~ 256 (425)
+..-++.||+.|-... ......++..++.....+. ......+.-+..-++++|+-|-
T Consensus 471 ~a~~~~~iYvvGG~~~----------~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 471 VAVLNGKIYVVGGFDG----------TSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred EEEECCEEEEECCccC----------CCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEec
Confidence 3334789999993321 1111124433433334443 3445566666677899999885
No 37
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=80.25 E-value=93 Score=33.72 Aligned_cols=214 Identities=11% Similarity=0.035 Sum_probs=106.5
Q ss_pred ccCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCe--eecCCCCCcEEEEEcC-----CCeEEEEEcCCCEEEEEeC
Q 014382 26 AGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPT--QLSALDGHEIVSVTCG-----ADHTTAYSESCMQVYSWGW 98 (425)
Q Consensus 26 ~g~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~--~v~~~~~~~i~~i~~G-----~~~~~~lt~~~g~v~~wG~ 98 (425)
...++.+++|++|++|..=.. ++-.......-.|. .+...++++|+.+.+- ....+++|.+ |.+.-.-.
T Consensus 544 ~t~d~LllfTs~Grv~~l~~~---~IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~-GyiKRi~l 619 (800)
T TIGR01063 544 STHDYLLFFTNRGKVYWLKVY---QIPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKN-GVVKKTSL 619 (800)
T ss_pred cCCCeEEEEeCCCcEEEEEhh---hCcCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCC-CEEEEEEh
Confidence 456668899999999988322 22111111111221 2334455677776652 2346777777 87776643
Q ss_pred CCCCCCCCCCCCCcccceeecccCCCCEEEEEe--CCCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeeccCCc
Q 014382 99 GDFGRLGHGNSSDLFTPLPIKALHSLRVKQIAC--GDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGV 176 (425)
Q Consensus 99 n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~--G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~ 176 (425)
+++-.... .....+..-.+..++.+.. ...+.+++|++|++|.+-.......+....... .+..-+++
T Consensus 620 ~~~~~~~r------~G~~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~----~i~L~~~E 689 (800)
T TIGR01063 620 TEFSNIRS------NGIIAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVR----GIKLKNED 689 (800)
T ss_pred HHhhhhcc------CCcccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCee----cccCCCCC
Confidence 33211000 0000011112334554433 346799999999999997665544443322111 12222455
Q ss_pred eEEEEEeC--CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEe--cCceEEEEecCCCEE
Q 014382 177 SIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVAC--GWRHTISVSSSGRLY 252 (425)
Q Consensus 177 ~i~~i~~G--~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~--g~~~~~~lt~~G~vy 252 (425)
+|+.+..- ..+.+++|++|.+.-.-..++-....+. .......+...+..++.+.. ..+..++++++|++.
T Consensus 690 ~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~-----kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~l 764 (800)
T TIGR01063 690 FVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGG-----KGVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLI 764 (800)
T ss_pred EEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCC-----cceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEE
Confidence 67666542 3457888888877765433321111100 00111111111234443322 334578888888887
Q ss_pred EecCCC
Q 014382 253 SYGWSK 258 (425)
Q Consensus 253 ~~G~n~ 258 (425)
.+-.++
T Consensus 765 rf~~~e 770 (800)
T TIGR01063 765 RTSVQD 770 (800)
T ss_pred EeeHhh
Confidence 765443
No 38
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=79.98 E-value=64 Score=31.68 Aligned_cols=95 Identities=15% Similarity=0.249 Sum_probs=51.2
Q ss_pred CeEEEeccCCceEEE--EcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCC--CcEEEEEcCCCeEEEEE--cCCCEE
Q 014382 20 PVLLISAGASHSVAL--LSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDG--HEIVSVTCGADHTTAYS--ESCMQV 93 (425)
Q Consensus 20 ~i~~i~~g~~~~~~l--~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~--~~i~~i~~G~~~~~~lt--~~~g~v 93 (425)
++..+++...-.+++ +..|++|.|=-+..-.|- .+.. ..|..+....+.+++++ +| |.|
T Consensus 83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~--------------v~~aHYQ~ITcL~fs~dgs~iiTgskD-g~V 147 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTISGNLYLWELSSGILLN--------------VLSAHYQSITCLKFSDDGSHIITGSKD-GAV 147 (476)
T ss_pred ceeeeecCCCceEEEeecccCcEEEEEeccccHHH--------------HHHhhccceeEEEEeCCCcEEEecCCC-ccE
Confidence 455566554433333 368999999876432221 1111 24666666666666665 45 888
Q ss_pred EEEeCCCCCCCCCCCCCCcccceeecccCC--CCEEEEEeCCC
Q 014382 94 YSWGWGDFGRLGHGNSSDLFTPLPIKALHS--LRVKQIACGDS 134 (425)
Q Consensus 94 ~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~--~~i~~v~~G~~ 134 (425)
.+|---+- -...+...|.|+..+.+ ..|+++.+|..
T Consensus 148 ~vW~l~~l-----v~a~~~~~~~p~~~f~~HtlsITDl~ig~G 185 (476)
T KOG0646|consen 148 LVWLLTDL-----VSADNDHSVKPLHIFSDHTLSITDLQIGSG 185 (476)
T ss_pred EEEEEEee-----cccccCCCccceeeeccCcceeEEEEecCC
Confidence 88852211 01112224555555543 36888888765
No 39
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=79.95 E-value=8.7 Score=34.24 Aligned_cols=35 Identities=17% Similarity=0.249 Sum_probs=30.3
Q ss_pred cCCCCCCCCeEEEeccCCceEEEEcCCeEEEEeCC
Q 014382 12 STTAAPFRPVLLISAGASHSVALLSGNIVCSWGRG 46 (425)
Q Consensus 12 ~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~n 46 (425)
-+++....+++.+.|-+.+.++||.+|.+|+|--.
T Consensus 6 ~P~i~Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~ 40 (219)
T PF07569_consen 6 LPPIVLGSPVSFLECNGSYLLAITSSGLLYVWNLK 40 (219)
T ss_pred cCcEecCCceEEEEeCCCEEEEEeCCCeEEEEECC
Confidence 35667778999999999999999999999999743
No 40
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=79.48 E-value=0.27 Score=52.67 Aligned_cols=129 Identities=18% Similarity=0.267 Sum_probs=85.0
Q ss_pred CCcEEEEEcCCCeEEEEEcCCCEEEEEeCCCCCCCCC--CCCCCccccee-ecccCCCCEEEEEeCCCEEEEEEcCCCEE
Q 014382 70 GHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGH--GNSSDLFTPLP-IKALHSLRVKQIACGDSHCLAVTVEGEVQ 146 (425)
Q Consensus 70 ~~~i~~i~~G~~~~~~lt~~~g~v~~wG~n~~g~lg~--~~~~~~~~p~~-v~~~~~~~i~~v~~G~~~~~~lt~~G~vy 146 (425)
..+++.|-+-....++|..+ |++|.|-..+.--|-. ....+...|.. .-.+.+.+|+.+++..-..-++|++|+|.
T Consensus 373 an~~I~I~A~s~el~Alhrk-GelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghla 451 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRK-GELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLA 451 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhC-CceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchh
Confidence 34677777777778889998 9999998665433322 11122333332 22356779999999999999999999999
Q ss_pred EEeCCCCCccCCCC--CCCcccceeeeccCCceEEEEEeCCCeEEEEecCCcEEEeeCCC
Q 014382 147 SWGRNQNGQLGLGT--TEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGR 204 (425)
Q Consensus 147 ~~G~n~~gqlg~~~--~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~L~~~g~vy~~G~n~ 204 (425)
+|=+. +|.+- .......+.+ ...++.+++..|...|.++..+|+-+|-||---
T Consensus 452 sWlDE----cgagV~fkLa~ea~Tki-eed~~maVqd~~~adhlaAf~~dniihWcGiVP 506 (3015)
T KOG0943|consen 452 SWLDE----CGAGVAFKLAHEAQTKI-EEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVP 506 (3015)
T ss_pred hHHhh----hhhhhhhhhhhhhhhhh-hhhhHHHHHHHHHHHHHHHHhhhceeeEEeeee
Confidence 99432 12111 1111112222 234566788888889999999999999999544
No 41
>PHA02713 hypothetical protein; Provisional
Probab=79.18 E-value=53 Score=33.89 Aligned_cols=14 Identities=7% Similarity=0.093 Sum_probs=10.3
Q ss_pred EEEcCCCEEEEeCC
Q 014382 138 AVTVEGEVQSWGRN 151 (425)
Q Consensus 138 ~lt~~G~vy~~G~n 151 (425)
+..-+|+||+.|-.
T Consensus 394 ~~~~~g~IYviGG~ 407 (557)
T PHA02713 394 MCVLDQYIYIIGGR 407 (557)
T ss_pred EEEECCEEEEEeCC
Confidence 33458999999854
No 42
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=78.15 E-value=69 Score=31.06 Aligned_cols=18 Identities=17% Similarity=0.117 Sum_probs=12.9
Q ss_pred CEEEEEEcCCCEEEEeCC
Q 014382 134 SHCLAVTVEGEVQSWGRN 151 (425)
Q Consensus 134 ~~~~~lt~~G~vy~~G~n 151 (425)
.|+++...+++||++|-.
T Consensus 131 ~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ceEEEEeeCCEEEEECCC
Confidence 455555468999999864
No 43
>PLN02153 epithiospecifier protein
Probab=78.02 E-value=65 Score=30.68 Aligned_cols=17 Identities=18% Similarity=0.047 Sum_probs=11.6
Q ss_pred CeEEEEecCCcEEEeeCC
Q 014382 186 EHSVAVAEDGELYGWGWG 203 (425)
Q Consensus 186 ~~~~~L~~~g~vy~~G~n 203 (425)
.|++++. +++||++|-.
T Consensus 244 ~~~~~~~-~~~iyv~GG~ 260 (341)
T PLN02153 244 VFAHAVV-GKYIIIFGGE 260 (341)
T ss_pred eeeeEEE-CCEEEEECcc
Confidence 4555554 5799999953
No 44
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=77.63 E-value=31 Score=31.65 Aligned_cols=99 Identities=17% Similarity=0.143 Sum_probs=53.8
Q ss_pred CceEEEEcCCeEEEEeCCC-CCccCCCCCCCccCCeeecCCCCCcEEEEEcCCCeEEEEEcCCCEEEEEeCCC-CCCCCC
Q 014382 29 SHSVALLSGNIVCSWGRGE-DGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGD-FGRLGH 106 (425)
Q Consensus 29 ~~~~~l~~~g~v~~wG~n~-~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~~g~v~~wG~n~-~g~lg~ 106 (425)
-|.+++..||..|..-... -++++...-+...-|.. .+.+-++-.+.++..+ |+||.-|.+. +|+|-.
T Consensus 106 Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp---------~~~a~~nlet~vfD~~-G~lWFt~q~G~yGrLdP 175 (353)
T COG4257 106 PHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLP---------LEHADANLETAVFDPW-GNLWFTGQIGAYGRLDP 175 (353)
T ss_pred CceEEECCCCCeeEecCcceeEEecCcccceEEeecc---------cccCCCcccceeeCCC-ccEEEeeccccceecCc
Confidence 3777888999999876542 22332211111222222 2233345567778887 9999999642 333322
Q ss_pred CCCCCcccceeecccCCCCEEEEEeCCCEEEEEEcCCCEEEEe
Q 014382 107 GNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWG 149 (425)
Q Consensus 107 ~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~~lt~~G~vy~~G 149 (425)
........|.| .-+.-+-++.|-||+||.--
T Consensus 176 a~~~i~vfpaP------------qG~gpyGi~atpdGsvwyas 206 (353)
T COG4257 176 ARNVISVFPAP------------QGGGPYGICATPDGSVWYAS 206 (353)
T ss_pred ccCceeeeccC------------CCCCCcceEECCCCcEEEEe
Confidence 11111111111 12335678899999999874
No 45
>PHA02713 hypothetical protein; Provisional
Probab=76.14 E-value=1e+02 Score=31.88 Aligned_cols=20 Identities=5% Similarity=0.162 Sum_probs=13.2
Q ss_pred CCCEEEEEEcCCCEEEEeCC
Q 014382 132 GDSHCLAVTVEGEVQSWGRN 151 (425)
Q Consensus 132 G~~~~~~lt~~G~vy~~G~n 151 (425)
...+..+..-+|+||++|-.
T Consensus 341 ~R~~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 341 NRCRFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred hhhceeEEEECCEEEEECCc
Confidence 33333445558999999964
No 46
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=75.43 E-value=88 Score=30.86 Aligned_cols=70 Identities=13% Similarity=0.169 Sum_probs=42.2
Q ss_pred CCEEEEEeC-CCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeee--ccCCceEEEEEeCCCeEEEEecCCcEEEe
Q 014382 124 LRVKQIACG-DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQ--AFEGVSIKMVAAGAEHSVAVAEDGELYGW 200 (425)
Q Consensus 124 ~~i~~v~~G-~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~--~~~~~~i~~i~~G~~~~~~L~~~g~vy~~ 200 (425)
.+|+.+.-- ..+.++|.++|.++.+. -.|.. ....+..+. ...+.++-.+..+.+-.++|+.++++|..
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~------~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v 152 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF------QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVV 152 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEe--CCCce------eechhhhccccCcccccccccccCCCCEEEECCCCeEEEE
Confidence 467777664 46889999999988873 22322 111111221 11122333445666778999999999987
Q ss_pred e
Q 014382 201 G 201 (425)
Q Consensus 201 G 201 (425)
-
T Consensus 153 ~ 153 (410)
T PF04841_consen 153 N 153 (410)
T ss_pred e
Confidence 4
No 47
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=75.00 E-value=7 Score=23.22 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=22.2
Q ss_pred CCEEEEEeCC-CEEEEEEcCCCEEEE
Q 014382 124 LRVKQIACGD-SHCLAVTVEGEVQSW 148 (425)
Q Consensus 124 ~~i~~v~~G~-~~~~~lt~~G~vy~~ 148 (425)
-.+++|++|. ....+++.+|.||..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 3799999999 999999999999964
No 48
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.19 E-value=1.1e+02 Score=34.22 Aligned_cols=214 Identities=16% Similarity=0.090 Sum_probs=105.2
Q ss_pred EEEEcCCCEEEEeCCCCCccCCCCCCCcc--cceeeeccCCceEEEEEeCCCeEEEEecCCcEEEeeCCCCCC-CCCCCC
Q 014382 137 LAVTVEGEVQSWGRNQNGQLGLGTTEDSL--VPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGN-LGLGDR 213 (425)
Q Consensus 137 ~~lt~~G~vy~~G~n~~gqlg~~~~~~~~--~p~~~~~~~~~~i~~i~~G~~~~~~L~~~g~vy~~G~n~~gq-lg~~~~ 213 (425)
+.+|-|.++|.|-.++.+++-.=+..... .-..+.+-.+.-+-. -.|.++|...-+|+..|-...-. .+....
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~----IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f 168 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPE----IQHLLVVATPVEIVILGVSFDEFTGELSIF 168 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhh----hheeEEecccceEEEEEEEeccccCccccc
Confidence 57788999999998876555322221111 111111111111111 26889998888999888433211 111111
Q ss_pred CCCcceeeeeeeecCCCeEEEEEecCceEEEEe-cCCCEE----EecCCCCCcCCCC-----CCCCcccceeeccc--cC
Q 014382 214 NDRLIPEKVATVDLQREKMVMVACGWRHTISVS-SSGRLY----SYGWSKYGQLGHG-----DFKDHLVPCQLEAL--RE 281 (425)
Q Consensus 214 ~~~~~p~~v~~~~~~~~~i~~i~~g~~~~~~lt-~~G~vy----~~G~n~~gqlg~~-----~~~~~~~p~~v~~~--~~ 281 (425)
... -+| ...+..|..|.+-.+--++++ +||.|| ..+++.+++-.+. ..-....|..+..+ ..
T Consensus 169 ~~~---~~i---~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~ 242 (1311)
T KOG1900|consen 169 NTS---FKI---SVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSK 242 (1311)
T ss_pred ccc---eee---ecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCC
Confidence 111 112 223556767765555555555 666655 3344444442111 11122345533322 24
Q ss_pred CcEEEEecCCceEEE--EeCCCcEEEeeeCCCCCcccCCCCC---------cccceEeecCCCCcEEEEEc------CCC
Q 014382 282 SFISQISGGWRHTMA--VTSDGKLYGWGWNKFGQVGVGDNVD---------HCSPVQVKFPLDQKVVQISC------GWR 344 (425)
Q Consensus 282 ~~i~~i~~G~~~~~~--lt~~g~v~~wG~n~~gqLG~~~~~~---------~~~p~~i~~~~~~~i~~i~~------G~~ 344 (425)
.+|.+|+......+. +++.|.|-+|=-...|+-+.-.-.. ...-.++.-+.-.+|++|+. -+-
T Consensus 243 dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~~~~s~f~~IvsI~~l~~~es~~l 322 (1311)
T KOG1900|consen 243 DPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNPLDDSVFFSIVSISPLSASESNDL 322 (1311)
T ss_pred CcceeeEeccccceeeeeccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccccCCCcccceeEEecccCcccccce
Confidence 579999988877765 5678887777555444433210000 00000111111134555533 344
Q ss_pred eeEEEeCCC-CEEEeeC
Q 014382 345 HTLAVTERQ-NVFSWGR 360 (425)
Q Consensus 345 ~~~~l~~~g-~vy~wG~ 360 (425)
|.+|++..| .+|.-|.
T Consensus 323 ~LvA~ts~GvRlYfs~s 339 (1311)
T KOG1900|consen 323 HLVAITSTGVRLYFSTS 339 (1311)
T ss_pred eEEEEecCCeEEEEecc
Confidence 888999888 5776553
No 49
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=73.24 E-value=1.5e+02 Score=32.69 Aligned_cols=251 Identities=16% Similarity=0.091 Sum_probs=121.5
Q ss_pred ccccccCCCCCCCCeEEEeccCCc--eEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeec------------CCCCCc
Q 014382 7 ASEAASTTAAPFRPVLLISAGASH--SVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLS------------ALDGHE 72 (425)
Q Consensus 7 ~~~~~~~~~~~~~~i~~i~~g~~~--~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~------------~~~~~~ 72 (425)
+-++....+..+.+|..++....+ .++++.||+++.|-........ ...|.... ......
T Consensus 415 PPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (928)
T PF04762_consen 415 PPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWS------VKPPKLLSSISLDSMDISDSELPLGS 488 (928)
T ss_pred CchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCccc------ccCcchhhhccccccccccccccccc
Confidence 334444445567799999998888 8999999988777633221110 11111111 111234
Q ss_pred EEEEEcCCCe-EEEEEcCC---CEEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEE-eCCCE-EEEEEcCCCEE
Q 014382 73 IVSVTCGADH-TTAYSESC---MQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIA-CGDSH-CLAVTVEGEVQ 146 (425)
Q Consensus 73 i~~i~~G~~~-~~~lt~~~---g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~-~G~~~-~~~lt~~G~vy 146 (425)
+.++..-... .+++.... ..+..+-..+ ............. ...+..++ ....+ .++-+.+|++|
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~q~~~G~v~ 559 (928)
T PF04762_consen 489 LRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDD--------SENSASVESSTEV-DGVVLIISSSPDSGSLYIQTNDGKVF 559 (928)
T ss_pred EEEEEEeCCCEEEEEEecCcccceEEEEEecc--------CCCceeEEEEecc-CceEEEEeeCCCCcEEEEEECCCEEE
Confidence 5555543333 33333320 1222221110 0011111111111 22333333 33343 66778899999
Q ss_pred EEeCCCCCccCCCCCCCcccceeeeccCCceEEEEEeCC----CeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeee
Q 014382 147 SWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA----EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKV 222 (425)
Q Consensus 147 ~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G~----~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v 222 (425)
..-.... . ......|+... .+.-+..+. .+.+.|+++|++|.=+ ..+
T Consensus 560 ~~~~~~~--~----~~~~~fp~~c~-----~~~~~~~~~~~~~~~~~GLs~~~~Ly~n~------------------~~l 610 (928)
T PF04762_consen 560 QLSSDGE--L----SQIVKFPQPCP-----WMEVCQINGSEDKRVLFGLSSNGRLYANS------------------RLL 610 (928)
T ss_pred EeecCCC--c----cccccCCCCCc-----EEEEEEECCccceeEEEEECCCCEEEECC------------------EEE
Confidence 5422111 0 00011122111 122222333 3688999999999521 122
Q ss_pred eeeecCCCeEEEEEecCceEEEEecCCCEEEecCC-CCCcCCCCCCCCcccceeec-cccCCcEEEEecCCceEEEEeCC
Q 014382 223 ATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWS-KYGQLGHGDFKDHLVPCQLE-ALRESFISQISGGWRHTMAVTSD 300 (425)
Q Consensus 223 ~~~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n-~~gqlg~~~~~~~~~p~~v~-~~~~~~i~~i~~G~~~~~~lt~~ 300 (425)
. ..++++.....|-++-|.+-.+.+.=-+ ....+ ..+.... ...++++..|.-|..-..++-.+
T Consensus 611 a------~~~tSF~v~~~~Ll~TT~~h~l~fv~L~~~~~~l--------~~~~~~~~~~~de~~R~VERGsriVt~vp~~ 676 (928)
T PF04762_consen 611 A------SNCTSFAVTDSFLLFTTTQHTLKFVHLNSSVEDL--------EIPPDSPENSYDERCRRVERGSRIVTAVPSD 676 (928)
T ss_pred e------cCCceEEEEcCEEEEEecCceEEEEECcCchhhc--------ccccCccccccccccccCccCCEEEEEeCCC
Confidence 1 3788888888898888888777776544 11111 1111000 00234577777777777777666
Q ss_pred CcEEEeeeCCCCCcccCCCCCc
Q 014382 301 GKLYGWGWNKFGQVGVGDNVDH 322 (425)
Q Consensus 301 g~v~~wG~n~~gqLG~~~~~~~ 322 (425)
-+|.. |+-.|+-+.+
T Consensus 677 ~~vVL-------QmPRGNLEtI 691 (928)
T PF04762_consen 677 TSVVL-------QMPRGNLETI 691 (928)
T ss_pred ceEEE-------EcCCCchhhh
Confidence 66654 6655554443
No 50
>PRK05560 DNA gyrase subunit A; Validated
Probab=70.08 E-value=1.7e+02 Score=31.82 Aligned_cols=215 Identities=14% Similarity=0.093 Sum_probs=107.4
Q ss_pred eccCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCe--eecCCCCCcEEEEEcCC-----CeEEEEEcCCCEEEEEe
Q 014382 25 SAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPT--QLSALDGHEIVSVTCGA-----DHTTAYSESCMQVYSWG 97 (425)
Q Consensus 25 ~~g~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~--~v~~~~~~~i~~i~~G~-----~~~~~lt~~~g~v~~wG 97 (425)
+...+..+++|+.|++|..=... |-.......-.|. .+...++++|+.+.+-. ...+++|++ |.+.---
T Consensus 545 ~~t~d~LllfTs~Grv~~l~v~~---iP~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~-GyiKRi~ 620 (805)
T PRK05560 545 ASTHDTLLFFTNRGRVYRLKVYE---IPEASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKN-GTVKKTS 620 (805)
T ss_pred ecCCCeEEEEecCCeEEEEEhhh---CcCCCcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCC-CEEEEEE
Confidence 34566688999999999886542 2111111111221 23344566787776644 346777787 8776554
Q ss_pred CCCCCCCCCCCCCCcccceeecccCCCCEEEEEe--CCCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeeccCC
Q 014382 98 WGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIAC--GDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEG 175 (425)
Q Consensus 98 ~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~--G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~ 175 (425)
.+++-....+ ....+..-.+..++.+.. ...+.+++|++|++|.+-.......+....... .+..-++
T Consensus 621 l~~~~~~~r~------G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~----~i~L~~~ 690 (805)
T PRK05560 621 LSEFSNIRSN------GIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTARGVR----GIKLREG 690 (805)
T ss_pred hHHhhhcccC------CceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccCCcc----cccCCCC
Confidence 3332110000 011111112445554433 346799999999999997655444333221110 0111234
Q ss_pred ceEEEEEeCC---CeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEE--EecCceEEEEecCCC
Q 014382 176 VSIKMVAAGA---EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMV--ACGWRHTISVSSSGR 250 (425)
Q Consensus 176 ~~i~~i~~G~---~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i--~~g~~~~~~lt~~G~ 250 (425)
++|+.+.... .+.+++|+.|.+.-.-..++-....+. .....-.+...+..++.+ ..+.+..++++.+|+
T Consensus 691 E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~-----kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~ 765 (805)
T PRK05560 691 DEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGG-----KGVITIKITEKNGKLVGALPVDDDDEIMLITDSGK 765 (805)
T ss_pred CEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCC-----CcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCe
Confidence 5666665433 257888888877755432221111000 001111111112344433 234456788888898
Q ss_pred EEEecCCC
Q 014382 251 LYSYGWSK 258 (425)
Q Consensus 251 vy~~G~n~ 258 (425)
+..+-.++
T Consensus 766 ~lrf~~~e 773 (805)
T PRK05560 766 LIRTRVSE 773 (805)
T ss_pred EEEEEHHH
Confidence 87765443
No 51
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=69.75 E-value=8.8 Score=22.76 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=21.8
Q ss_pred CcEEEEEcCC-CeeEEEeCCCCEEEe
Q 014382 334 QKVVQISCGW-RHTLAVTERQNVFSW 358 (425)
Q Consensus 334 ~~i~~i~~G~-~~~~~l~~~g~vy~w 358 (425)
..+.+|++|. +...+++.+|++|..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 5789999999 888999999999863
No 52
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=68.43 E-value=1.2e+02 Score=29.42 Aligned_cols=18 Identities=22% Similarity=0.196 Sum_probs=12.5
Q ss_pred CeEEEEecCCcEEEeeCC
Q 014382 186 EHSVAVAEDGELYGWGWG 203 (425)
Q Consensus 186 ~~~~~L~~~g~vy~~G~n 203 (425)
.|+++...+++||++|-.
T Consensus 131 ~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ceEEEEeeCCEEEEECCC
Confidence 355555357899999853
No 53
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=63.45 E-value=1.5e+02 Score=28.77 Aligned_cols=116 Identities=18% Similarity=0.230 Sum_probs=53.5
Q ss_pred ceEEEEEeCCC-eE-EEEecCCc-EEEeeCCCCCCCCCCCCCCCcceeeeeeeecC-CCeEEEEEecCc-eEEEEecCCC
Q 014382 176 VSIKMVAAGAE-HS-VAVAEDGE-LYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQ-REKMVMVACGWR-HTISVSSSGR 250 (425)
Q Consensus 176 ~~i~~i~~G~~-~~-~~L~~~g~-vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~-~~~i~~i~~g~~-~~~~lt~~G~ 250 (425)
+.+..|..|.. |. ++.+.||+ +|+.+. .| .+..+++. .+.+..|..|.. +.++++.||+
T Consensus 27 ~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r--dg--------------~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~ 90 (369)
T PF02239_consen 27 KVVARIPTGGAPHAGLKFSPDGRYLYVANR--DG--------------TVSVIDLATGKVVATIKVGGNPRGIAVSPDGK 90 (369)
T ss_dssp SEEEEEE-STTEEEEEE-TT-SSEEEEEET--TS--------------EEEEEETTSSSEEEEEE-SSEEEEEEE--TTT
T ss_pred eEEEEEcCCCCceeEEEecCCCCEEEEEcC--CC--------------eEEEEECCcccEEEEEecCCCcceEEEcCCCC
Confidence 34667776654 54 55677776 777642 12 23333332 345667777764 7788999999
Q ss_pred EEEecCCCCCcCCCCCCCCcccceeecc------ccCCcEEEEecCC---ceEEEEeCCCcEEEee
Q 014382 251 LYSYGWSKYGQLGHGDFKDHLVPCQLEA------LRESFISQISGGW---RHTMAVTSDGKLYGWG 307 (425)
Q Consensus 251 vy~~G~n~~gqlg~~~~~~~~~p~~v~~------~~~~~i~~i~~G~---~~~~~lt~~g~v~~wG 307 (425)
...-++...+++-.-+......-..+.. ....++..|.... .+.+.+.+.+++|.--
T Consensus 91 ~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd 156 (369)
T PF02239_consen 91 YVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD 156 (369)
T ss_dssp EEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred EEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence 6655543334433222111111111110 0223455554322 2455677788888753
No 54
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=62.80 E-value=1.7e+02 Score=29.30 Aligned_cols=56 Identities=16% Similarity=0.165 Sum_probs=34.0
Q ss_pred cEEEEEcCCCeEEEEEcCCCEEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeCCCEEEEEEcCCCEEE
Q 014382 72 EIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQS 147 (425)
Q Consensus 72 ~i~~i~~G~~~~~~lt~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~~lt~~G~vy~ 147 (425)
.|..++.+.+--++--+.+|.+++|+.... ... +-+...-|.-+++++..+|.|.+
T Consensus 248 ~Vl~v~F~engdviTgDS~G~i~Iw~~~~~------------~~~--------k~~~aH~ggv~~L~~lr~GtllS 303 (626)
T KOG2106|consen 248 FVLCVTFLENGDVITGDSGGNILIWSKGTN------------RIS--------KQVHAHDGGVFSLCMLRDGTLLS 303 (626)
T ss_pred EEEEEEEcCCCCEEeecCCceEEEEeCCCc------------eEE--------eEeeecCCceEEEEEecCccEee
Confidence 466677776666666666699999985211 000 11123445667777777777776
No 55
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=61.95 E-value=1e+02 Score=31.94 Aligned_cols=57 Identities=16% Similarity=0.120 Sum_probs=30.2
Q ss_pred EEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcEEE---EecCCceEEEEeCCCcEEEeee
Q 014382 244 SVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQ---ISGGWRHTMAVTSDGKLYGWGW 308 (425)
Q Consensus 244 ~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~---i~~G~~~~~~lt~~g~v~~wG~ 308 (425)
+..-+++||+.|-.+. +.... -.+.-.+.....+. +.....+.-+..-++++|+-|-
T Consensus 471 ~a~~~~~iYvvGG~~~-~~~~~-------~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 471 VAVLNGKIYVVGGFDG-TSALS-------SVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred EEEECCEEEEECCccC-CCccc-------eEEEEcCCCCceeEcccCccccccccEEEECCEEEEEec
Confidence 4445889999995432 11000 01111122222222 3445566666777889999885
No 56
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=61.87 E-value=25 Score=19.76 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=20.7
Q ss_pred CeEEEEEecCceEEEEecCCCEEE
Q 014382 230 EKMVMVACGWRHTISVSSSGRLYS 253 (425)
Q Consensus 230 ~~i~~i~~g~~~~~~lt~~G~vy~ 253 (425)
+.|..|++|....++.|+.+-|-.
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRi 25 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRI 25 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEe
Confidence 589999999999999998886654
No 57
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=58.87 E-value=2.6e+02 Score=30.01 Aligned_cols=161 Identities=12% Similarity=0.057 Sum_probs=85.3
Q ss_pred CCCeEEEEEcCCCEEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEe--CCCEEEEEEcCCCEEEEeCCCCCcc
Q 014382 79 GADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIAC--GDSHCLAVTVEGEVQSWGRNQNGQL 156 (425)
Q Consensus 79 G~~~~~~lt~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~--G~~~~~~lt~~G~vy~~G~n~~gql 156 (425)
-...++++|++ |-|-.--...+. +.-+..-.+..++.+.. ...+.+++|++|++|.+..+.-. .
T Consensus 493 ~e~v~VilTk~-G~IKr~~~~~~~------------~saikLKegD~L~~~~~~~t~d~LllfTs~Gr~yrf~v~eIP-~ 558 (735)
T TIGR01062 493 KEPVTIILSKM-GWVRSAKGHDID------------LSTLKYKAGDSEKAIIEGKSNQKVVFIDSTGRSYALDPDNLP-S 558 (735)
T ss_pred CcceEEEEecC-CEEEeccccccc------------hhccCcCCCCeEEEEEEecCCCEEEEEECCCeEEEEEhHhcC-c
Confidence 45667788888 866654333221 11222223445555544 44568999999999999766543 2
Q ss_pred CCCCCCCcccceeeeccCCceEEEEEeCCC--eEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEE
Q 014382 157 GLGTTEDSLVPQKLQAFEGVSIKMVAAGAE--HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVM 234 (425)
Q Consensus 157 g~~~~~~~~~p~~~~~~~~~~i~~i~~G~~--~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~ 234 (425)
|.+...+ .-..+...++..|+.+.+... +.+++++.|..+-.-..++-....+ -..+..+.. +..++.
T Consensus 559 GR~aGgp--V~~~L~L~~gE~Iv~~~~v~~~~~lLlaT~~GyGKrt~lse~~~~~Ra-------GKgvi~Lk~-~d~lv~ 628 (735)
T TIGR01062 559 ARGQGEP--LTGKLLLPIGATITNILMYSPNQLLLMASDAGYGFLCNFNDLIARNKA-------GKALINLPE-NASVIA 628 (735)
T ss_pred CccCCce--eEeeecCCCCCEEEEEEEecCCcEEEEEEcCCcEEEEEhHhccccCcC-------CeEEEEeCC-CCEEEE
Confidence 3222111 111222335667888776543 4788888897776543332211100 011111111 223332
Q ss_pred E--EecC-ceEEEEecCCCEEEecCCCCCcCC
Q 014382 235 V--ACGW-RHTISVSSSGRLYSYGWSKYGQLG 263 (425)
Q Consensus 235 i--~~g~-~~~~~lt~~G~vy~~G~n~~gqlg 263 (425)
+ ..+. .+.++++++|++..+-.++-.+++
T Consensus 629 v~~v~~~dd~V~liT~~GrlLrf~v~EIp~~g 660 (735)
T TIGR01062 629 PLPVNGDSDMIAAITEAGRMLVFPIDDLPELS 660 (735)
T ss_pred EEEEcCCCCEEEEEeCCCcEEEEEHHHCCccC
Confidence 2 2233 357789999999988765544443
No 58
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=58.54 E-value=3e+02 Score=30.61 Aligned_cols=252 Identities=11% Similarity=0.040 Sum_probs=0.0
Q ss_pred CCeEEEEEcCCCEEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeCC--CEEEEEEcCCCEEEEeCCCCCccC
Q 014382 80 ADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--SHCLAVTVEGEVQSWGRNQNGQLG 157 (425)
Q Consensus 80 ~~~~~~lt~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~--~~~~~lt~~G~vy~~G~n~~gqlg 157 (425)
..-.+.|+.+ |-+-..-...+..-+++ ..-+..-.+..+..+.... ++.+++|+.|++|..-...-.+..
T Consensus 516 E~v~v~lS~~-GyIKr~~~~~~~~q~~g-------~~~~~~ke~D~i~~~~~~~T~d~LL~FTn~Gkvy~ikvy~IPe~~ 587 (957)
T PRK13979 516 EDVVITLSNE-GFIKRIPLKSYNRSNSN-------VEDIEYREGDFNKFLIQSNTKDTLLIFTDKGNMYQIKGINIPEFK 587 (957)
T ss_pred cceEEEEecC-CEEEEcccccccccccc-------ccccccCCCCceEEEEEEcCCCEEEEEECCCeEEEEEeeeCCCCC
Q ss_pred CCCCCCcccceee-eccCCceEEEEEeCCCe-----EEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCe
Q 014382 158 LGTTEDSLVPQKL-QAFEGVSIKMVAAGAEH-----SVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREK 231 (425)
Q Consensus 158 ~~~~~~~~~p~~~-~~~~~~~i~~i~~G~~~-----~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~ 231 (425)
.........--.- ..+++++|+.+.+-..+ .+++|++|.+. +..+............-.+.. +..
T Consensus 588 ~~~~G~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~G~VK--------rt~L~ef~~~r~~~~aikL~e-~De 658 (957)
T PRK13979 588 WKEKGERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDSGGIK--------KTSLDKFVTNYTKLMALKLKK-GEK 658 (957)
T ss_pred cCCCCeEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEEECCCeEE--------EEehhhccccccceEEEEcCC-CCE
Q ss_pred EEEEEecC-----ceEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcEEEEecCC---------------
Q 014382 232 MVMVACGW-----RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGW--------------- 291 (425)
Q Consensus 232 i~~i~~g~-----~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G~--------------- 291 (425)
++.+.... .+.+++|++|....|-.++-..+|....- -.-+..-.+..|+.+..-.
T Consensus 659 LV~v~~~~~~~~~~~Iil~Tk~G~airF~~~eVr~mGR~a~G----VkgI~L~~~D~Vv~~~~~~~~~~~~~~~~~~~~~ 734 (957)
T PRK13979 659 LIKVKLVDRTREEKFIKIKTKKGLSFTVEEPELEPVDRNIIG----YQLFDLLPNDSIKKVDFCDNYEYKEFYVNINKKG 734 (957)
T ss_pred EEEEEEcCCCCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcC----eeeEeeCCCCEEEEEEEEhhhhhcchhhhccccc
Q ss_pred --------------------ceEEEEeCCCcEEEeeeCCCCCcccCCCCCcccceEe-ecCCCCcEEEEEcCCC-----e
Q 014382 292 --------------------RHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQV-KFPLDQKVVQISCGWR-----H 345 (425)
Q Consensus 292 --------------------~~~~~lt~~g~v~~wG~n~~gqLG~~~~~~~~~p~~i-~~~~~~~i~~i~~G~~-----~ 345 (425)
++.+++|+.|++|..=.-.--+ .......-...+ ++..+++|..+-.-.. .
T Consensus 735 ~~~~~~~~~~~~~~i~~~T~d~Ll~FTn~Gkvy~ikv~eIPe---~~~kG~~i~nll~~l~~~E~Ii~i~~~~~~~~~~~ 811 (957)
T PRK13979 735 IIKISDKDNKSSISVFTNSSKNLLIFSDEGKVYKIPAFMLQN---IKNEGINISALTGDFEKDEKIIKIISIFEFEEDLS 811 (957)
T ss_pred ceeecccccccccceeecCCceEEEEecCCeEEEEEeeeccc---ccccCcCHHHhhcccCCCCeEEEEEeecccCCCce
Q ss_pred eEEEeCCCCE
Q 014382 346 TLAVTERQNV 355 (425)
Q Consensus 346 ~~~l~~~g~v 355 (425)
.+++|++|.+
T Consensus 812 Ll~vTk~G~i 821 (957)
T PRK13979 812 IYFFSKKGLV 821 (957)
T ss_pred EEEEecCCcE
No 59
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=57.95 E-value=1.9e+02 Score=28.10 Aligned_cols=117 Identities=16% Similarity=0.215 Sum_probs=54.6
Q ss_pred cEEEEEcCCC-eEE-EEEcCCCEEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeCC-CEEEEEEcCCCEEEE
Q 014382 72 EIVSVTCGAD-HTT-AYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD-SHCLAVTVEGEVQSW 148 (425)
Q Consensus 72 ~i~~i~~G~~-~~~-~lt~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~-~~~~~lt~~G~vy~~ 148 (425)
.+..|..|.. |.. +.+.|...+|+.+. .|. -..+.......+..|..|. -+.++++.||+...-
T Consensus 28 ~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r--dg~-----------vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v 94 (369)
T PF02239_consen 28 VVARIPTGGAPHAGLKFSPDGRYLYVANR--DGT-----------VSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYV 94 (369)
T ss_dssp EEEEEE-STTEEEEEE-TT-SSEEEEEET--TSE-----------EEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEE
T ss_pred EEEEEcCCCCceeEEEecCCCCEEEEEcC--CCe-----------EEEEECCcccEEEEEecCCCcceEEEcCCCCEEEE
Confidence 4666766544 553 44566235888753 222 1233333455677888876 567888999986555
Q ss_pred eCCCCCccCCCCCCCcccceeeec--c----CCceEEEEEeC---CCeEEEEecCCcEEEee
Q 014382 149 GRNQNGQLGLGTTEDSLVPQKLQA--F----EGVSIKMVAAG---AEHSVAVAEDGELYGWG 201 (425)
Q Consensus 149 G~n~~gqlg~~~~~~~~~p~~~~~--~----~~~~i~~i~~G---~~~~~~L~~~g~vy~~G 201 (425)
++...+++-.-+......-..++. . ...++..|... ..+.+.|.+.+++|.--
T Consensus 95 ~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd 156 (369)
T PF02239_consen 95 ANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD 156 (369)
T ss_dssp EEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred EecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence 543334443222211111111110 0 12345555432 23566777888888653
No 60
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=55.47 E-value=2.8e+02 Score=29.40 Aligned_cols=126 Identities=19% Similarity=0.207 Sum_probs=67.1
Q ss_pred EEEecCCCEEEecCCCCCcCCCCCCCCccc-ceeeccccCCcEEEEecCCceEEEE--eCCCcEEEeeeCCCCCcccCCC
Q 014382 243 ISVSSSGRLYSYGWSKYGQLGHGDFKDHLV-PCQLEALRESFISQISGGWRHTMAV--TSDGKLYGWGWNKFGQVGVGDN 319 (425)
Q Consensus 243 ~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~-p~~v~~~~~~~i~~i~~G~~~~~~l--t~~g~v~~wG~n~~gqLG~~~~ 319 (425)
+++...|.-.++|...-|||...+-..... .++-..+.. +..++-..+-.++. -+||+|=+|-....
T Consensus 313 ~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~--i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg-------- 382 (893)
T KOG0291|consen 313 VSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDR--ITSLAYSPDGQLIATGAEDGKVKVWNTQSG-------- 382 (893)
T ss_pred EEecccCCEEEEcCCccceEEEEEeeccceeeeccccccc--eeeEEECCCCcEEEeccCCCcEEEEeccCc--------
Confidence 455667888899998888887655333222 111112222 55444444433333 36777777754321
Q ss_pred CCcccceEeecCC---CCcEEEEEcCCCeeEEEeCCCCEEEeeCCCCCccCCCCCCCCCCCeEeeecccC
Q 014382 320 VDHCSPVQVKFPL---DQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLD 386 (425)
Q Consensus 320 ~~~~~p~~i~~~~---~~~i~~i~~G~~~~~~l~~~g~vy~wG~n~~gqLG~g~~~~~~~p~~~~~~~~~ 386 (425)
+--+.+.. ....+++..-.+..+-.+-||.|-+|=...+-.. .+-....|+...-+..|
T Consensus 383 -----fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNf---RTft~P~p~QfscvavD 444 (893)
T KOG0291|consen 383 -----FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNF---RTFTSPEPIQFSCVAVD 444 (893)
T ss_pred -----eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccccee---eeecCCCceeeeEEEEc
Confidence 11111111 2345566666666677778999999977654332 11223344444445455
No 61
>PHA02790 Kelch-like protein; Provisional
Probab=54.44 E-value=1.3e+02 Score=30.41 Aligned_cols=13 Identities=15% Similarity=0.135 Sum_probs=10.0
Q ss_pred EEcCCCEEEEeCC
Q 014382 139 VTVEGEVQSWGRN 151 (425)
Q Consensus 139 lt~~G~vy~~G~n 151 (425)
..-+|+||+.|-.
T Consensus 315 v~~~~~iYviGG~ 327 (480)
T PHA02790 315 VPANNKLYVVGGL 327 (480)
T ss_pred EEECCEEEEECCc
Confidence 3468999999863
No 62
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=53.13 E-value=3.3e+02 Score=29.58 Aligned_cols=163 Identities=10% Similarity=0.034 Sum_probs=83.2
Q ss_pred cCCCeEEEEEcCCCEEEEEeCCCCCCCCCCCC-CCcccceeecccCCCCEEEEEeC-----CCEEEEEEcCCCEEEEeCC
Q 014382 78 CGADHTTAYSESCMQVYSWGWGDFGRLGHGNS-SDLFTPLPIKALHSLRVKQIACG-----DSHCLAVTVEGEVQSWGRN 151 (425)
Q Consensus 78 ~G~~~~~~lt~~~g~v~~wG~n~~g~lg~~~~-~~~~~p~~v~~~~~~~i~~v~~G-----~~~~~~lt~~G~vy~~G~n 151 (425)
...++.+++|+. |++|..-....-..+.... .... ..+....+.+|+.+.+- ....+++|++|.+.-.-.+
T Consensus 544 ~t~d~LllfTs~-Grv~~l~~~~IP~~~r~~~G~~i~--~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~ 620 (800)
T TIGR01063 544 STHDYLLFFTNR-GKVYWLKVYQIPEASRTAKGKPIV--NLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLT 620 (800)
T ss_pred cCCCeEEEEeCC-CcEEEEEhhhCcCCCcCCCCcCHH--HhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhH
Confidence 345567778887 9999995443322221111 1111 11223345677776652 2467888999987766433
Q ss_pred CCCccCCCCCCCcccceeeeccCCceEEEEE--eCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCC
Q 014382 152 QNGQLGLGTTEDSLVPQKLQAFEGVSIKMVA--AGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQR 229 (425)
Q Consensus 152 ~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~--~G~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~ 229 (425)
.+-..... -...+..-++..++.+. ....+.+++|++|++|.+-..+--..+.... ..++..+. .+
T Consensus 621 ~~~~~~r~------G~~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~-----Gv~~i~L~-~~ 688 (800)
T TIGR01063 621 EFSNIRSN------GIIAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAAR-----GVRGIKLK-NE 688 (800)
T ss_pred HhhhhccC------CcccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCC-----CeecccCC-CC
Confidence 22110000 00001111223444442 3345689999999999887655433332221 11111111 24
Q ss_pred CeEEEEEec--CceEEEEecCCCEEEec
Q 014382 230 EKMVMVACG--WRHTISVSSSGRLYSYG 255 (425)
Q Consensus 230 ~~i~~i~~g--~~~~~~lt~~G~vy~~G 255 (425)
++|+.+..- ..+.+++|++|.+.-.-
T Consensus 689 E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~ 716 (800)
T TIGR01063 689 DFVVSLLVVSEESYLLIVTENGYGKRTS 716 (800)
T ss_pred CEEEEEEEeccccEEEEEecCCcEEEEE
Confidence 567766543 33577888888766543
No 63
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=52.86 E-value=2e+02 Score=26.99 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=11.8
Q ss_pred ceEEEEecCCCEEEecCC
Q 014382 240 RHTISVSSSGRLYSYGWS 257 (425)
Q Consensus 240 ~~~~~lt~~G~vy~~G~n 257 (425)
.|++++ -+++||.+|-.
T Consensus 116 ~~~~~~-~~~~iYv~GG~ 132 (323)
T TIGR03548 116 NGSACY-KDGTLYVGGGN 132 (323)
T ss_pred CceEEE-ECCEEEEEeCc
Confidence 455554 36899999864
No 64
>PRK05560 DNA gyrase subunit A; Validated
Probab=52.39 E-value=3.4e+02 Score=29.51 Aligned_cols=216 Identities=12% Similarity=0.075 Sum_probs=104.0
Q ss_pred cCCCeEEEEEcCCCEEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeCC-----CEEEEEEcCCCEEEEeCCC
Q 014382 78 CGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD-----SHCLAVTVEGEVQSWGRNQ 152 (425)
Q Consensus 78 ~G~~~~~~lt~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~-----~~~~~lt~~G~vy~~G~n~ 152 (425)
....+.+++|+. |++|..-....-..+.... .......+....+.+|+.+.+-. ...+++|++|.+.-.-.+.
T Consensus 546 ~t~d~LllfTs~-Grv~~l~v~~iP~~~~~~~-G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~ 623 (805)
T PRK05560 546 STHDTLLFFTNR-GRVYRLKVYEIPEASRTAR-GRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSE 623 (805)
T ss_pred cCCCeEEEEecC-CeEEEEEhhhCcCCCcCCC-CeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHH
Confidence 345567778887 9999997654332221110 00011112333466787776644 4578899999777554322
Q ss_pred CCccCCCCCCCcccceeeeccCCceEEEEE--eCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCC
Q 014382 153 NGQLGLGTTEDSLVPQKLQAFEGVSIKMVA--AGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQRE 230 (425)
Q Consensus 153 ~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~--~G~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~ 230 (425)
+-....+ -...+..-++..++.+. ....+.+++|++|++|.+-..+--..+.... ..++..+ ..++
T Consensus 624 ~~~~~r~------G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~-----Gv~~i~L-~~~E 691 (805)
T PRK05560 624 FSNIRSN------GIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTAR-----GVRGIKL-REGD 691 (805)
T ss_pred hhhcccC------CceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccC-----CcccccC-CCCC
Confidence 2110000 00111111233454443 3345689999999999886544322222111 1111112 1245
Q ss_pred eEEEEEecC---ceEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcEEEE--ecCCceEEEEeCCCcEEE
Q 014382 231 KMVMVACGW---RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQI--SGGWRHTMAVTSDGKLYG 305 (425)
Q Consensus 231 ~i~~i~~g~---~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i--~~G~~~~~~lt~~g~v~~ 305 (425)
+|+.+..-. .+.+++|++|.+--.-.+++-....+... ..-..+..- +..+..+ ..+.+..+++|.+|++..
T Consensus 692 ~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~kG--~~~lkl~~~-~d~lv~v~~v~~~~~v~i~T~~G~~lr 768 (805)
T PRK05560 692 EVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGKG--VITIKITEK-NGKLVGALPVDDDDEIMLITDSGKLIR 768 (805)
T ss_pred EEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCCc--EEeeeccCC-CCeEEEEEEecCCCeEEEEecCCeEEE
Confidence 677665543 25778888886654432222111110000 000011000 1123322 234456788888888877
Q ss_pred eeeCC
Q 014382 306 WGWNK 310 (425)
Q Consensus 306 wG~n~ 310 (425)
+-.+.
T Consensus 769 f~~~e 773 (805)
T PRK05560 769 TRVSE 773 (805)
T ss_pred EEHHH
Confidence 65543
No 65
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=51.83 E-value=2.1e+02 Score=26.88 Aligned_cols=18 Identities=17% Similarity=0.211 Sum_probs=12.3
Q ss_pred CEEEEEEcCCCEEEEeCCC
Q 014382 134 SHCLAVTVEGEVQSWGRNQ 152 (425)
Q Consensus 134 ~~~~~lt~~G~vy~~G~n~ 152 (425)
.|++++ -+++||++|-..
T Consensus 116 ~~~~~~-~~~~iYv~GG~~ 133 (323)
T TIGR03548 116 NGSACY-KDGTLYVGGGNR 133 (323)
T ss_pred CceEEE-ECCEEEEEeCcC
Confidence 455544 478999998643
No 66
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=49.19 E-value=3.6e+02 Score=28.85 Aligned_cols=118 Identities=17% Similarity=0.189 Sum_probs=58.9
Q ss_pred ceEEEEcCCeEEEEeCCCCCccCCCCC----C---C-ccCCeee-c-CCCCCcEEEEEcCCCeE-EEEEcCCCEEEE---
Q 014382 30 HSVALLSGNIVCSWGRGEDGQLGHGDA----E---D-RLSPTQL-S-ALDGHEIVSVTCGADHT-TAYSESCMQVYS--- 95 (425)
Q Consensus 30 ~~~~l~~~g~v~~wG~n~~gqLG~~~~----~---~-~~~p~~v-~-~~~~~~i~~i~~G~~~~-~~lt~~~g~v~~--- 95 (425)
..++...|+.+|+|=.+....+-..-. . + ......+ . ......|.+|....... ++|.-. ..|++
T Consensus 34 rNLl~~~d~~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~-~~v~V~~L 112 (717)
T PF10168_consen 34 RNLLACRDGDLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGP-RGVVVLEL 112 (717)
T ss_pred eeeEEEeCCEEEEEECCCCEEEEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcC-CcEEEEEe
Confidence 345555679999998877654333111 0 1 0111111 1 11223577777664433 344433 33333
Q ss_pred ---EeCCCCCCCCCCCCCCcccceeec-----ccCCCCEEEEEe-----CCCEEEEEEcCCCEEEEeC
Q 014382 96 ---WGWGDFGRLGHGNSSDLFTPLPIK-----ALHSLRVKQIAC-----GDSHCLAVTVEGEVQSWGR 150 (425)
Q Consensus 96 ---wG~n~~g~lg~~~~~~~~~p~~v~-----~~~~~~i~~v~~-----G~~~~~~lt~~G~vy~~G~ 150 (425)
||.+..-+.|... ......++. .-....|+++.= .+.|.++||+|+.+-.+-.
T Consensus 113 P~r~g~~~~~~~g~~~--i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~ 178 (717)
T PF10168_consen 113 PRRWGKNGEFEDGKKE--INCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDI 178 (717)
T ss_pred ccccCccccccCCCcc--eeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEec
Confidence 5554332222221 111222221 122346777753 4789999999998776653
No 67
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=49.14 E-value=4.1e+02 Score=29.47 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=23.3
Q ss_pred CCCEEEEEeCCCE--EEEEEcCCCEEEEeC
Q 014382 123 SLRVKQIACGDSH--CLAVTVEGEVQSWGR 150 (425)
Q Consensus 123 ~~~i~~v~~G~~~--~~~lt~~G~vy~~G~ 150 (425)
...|.+|+....+ .++++.+|.|+.|-.
T Consensus 426 ~~~v~~vaf~~~~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 426 PSPVNDVAFSPSNSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred CCCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence 4579999998877 899999999888764
No 68
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=48.56 E-value=23 Score=21.61 Aligned_cols=18 Identities=33% Similarity=0.667 Sum_probs=15.3
Q ss_pred eEEEEeCCCcEEEeeeCC
Q 014382 293 HTMAVTSDGKLYGWGWNK 310 (425)
Q Consensus 293 ~~~~lt~~g~v~~wG~n~ 310 (425)
+.++++.+|.||+-|.-.
T Consensus 16 ~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 16 NGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred EEEEECCCCCEEEEEeec
Confidence 668899999999999743
No 69
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=46.74 E-value=2.3e+02 Score=25.82 Aligned_cols=138 Identities=18% Similarity=0.378 Sum_probs=65.3
Q ss_pred EEEE-EeCCCEEEEE-EcCCCEEEEeCCCCCccCCCCCCCcccceeeeccC-CceEEEEEe-CCCeEEEEecCCcEEEee
Q 014382 126 VKQI-ACGDSHCLAV-TVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFE-GVSIKMVAA-GAEHSVAVAEDGELYGWG 201 (425)
Q Consensus 126 i~~v-~~G~~~~~~l-t~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~-~~~i~~i~~-G~~~~~~L~~~g~vy~~G 201 (425)
|+.+ -|-.+++++- ++++.|-.|-.-+. +.+..++ +.++..+.. -..+.+-+..-+.|-.|-
T Consensus 146 Ir~v~wc~eD~~iLSSadd~tVRLWD~rTg--------------t~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwd 211 (334)
T KOG0278|consen 146 IRTVLWCHEDKCILSSADDKTVRLWDHRTG--------------TEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWD 211 (334)
T ss_pred ceeEEEeccCceEEeeccCCceEEEEeccC--------------cEEEEEecCCCCcceeeccCCCEEEEecCceeEEec
Confidence 4443 5666777665 67899999965321 1111110 112332221 133444555556677777
Q ss_pred CCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEecCceEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccC
Q 014382 202 WGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRE 281 (425)
Q Consensus 202 ~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~ 281 (425)
...++.|- ....|..|..-.+...+=+-|+. .+++.+|.+-.+.--.++. .
T Consensus 212 aksf~~lK-----s~k~P~nV~SASL~P~k~~fVaG--------ged~~~~kfDy~TgeEi~~--------------~-- 262 (334)
T KOG0278|consen 212 AKSFGLLK-----SYKMPCNVESASLHPKKEFFVAG--------GEDFKVYKFDYNTGEEIGS--------------Y-- 262 (334)
T ss_pred ccccccee-----eccCccccccccccCCCceEEec--------CcceEEEEEeccCCceeee--------------c--
Confidence 66655442 33445555443333333222222 2455566654433222221 0
Q ss_pred CcEEEEecCCceEEEEeCCCcEEEeeeC
Q 014382 282 SFISQISGGWRHTMAVTSDGKLYGWGWN 309 (425)
Q Consensus 282 ~~i~~i~~G~~~~~~lt~~g~v~~wG~n 309 (425)
.+=..|.-|++=.+-+|++|+-|+.
T Consensus 263 ---nkgh~gpVhcVrFSPdGE~yAsGSE 287 (334)
T KOG0278|consen 263 ---NKGHFGPVHCVRFSPDGELYASGSE 287 (334)
T ss_pred ---ccCCCCceEEEEECCCCceeeccCC
Confidence 0112234466666677777776653
No 70
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=43.50 E-value=3.3e+02 Score=26.81 Aligned_cols=66 Identities=15% Similarity=0.176 Sum_probs=42.3
Q ss_pred ceEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccC--CcEEEEecCCceEEEE--eCCCcEEEeeeC
Q 014382 240 RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRE--SFISQISGGWRHTMAV--TSDGKLYGWGWN 309 (425)
Q Consensus 240 ~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~--~~i~~i~~G~~~~~~l--t~~g~v~~wG~n 309 (425)
.+++++-.||-+|+-|. ..+++-..+.. .+..+..|+. .+|+.|+.+.+-.... .+|+.|..|--.
T Consensus 350 ~ts~~fHpDgLifgtgt-~d~~vkiwdlk---s~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLR 419 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGT-PDGVVKIWDLK---SQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLR 419 (506)
T ss_pred eEEeeEcCCceEEeccC-CCceEEEEEcC---CccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEeh
Confidence 57778888999998886 33454433322 2333333433 4588898887766544 467789999754
No 71
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=43.24 E-value=2.6e+02 Score=25.47 Aligned_cols=82 Identities=11% Similarity=0.285 Sum_probs=42.3
Q ss_pred ccceeeeccCCceEEE-EEeCCCeEEEE-ecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEecC-ce
Q 014382 165 LVPQKLQAFEGVSIKM-VAAGAEHSVAV-AEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW-RH 241 (425)
Q Consensus 165 ~~p~~~~~~~~~~i~~-i~~G~~~~~~L-~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~g~-~~ 241 (425)
..|+.+..-.+ -|+. +-|-.+++++- ++++.|-.|-.. +-+.+..+.+ +..|.+.-... .+
T Consensus 134 App~E~~ghtg-~Ir~v~wc~eD~~iLSSadd~tVRLWD~r--------------Tgt~v~sL~~-~s~VtSlEvs~dG~ 197 (334)
T KOG0278|consen 134 APPKEISGHTG-GIRTVLWCHEDKCILSSADDKTVRLWDHR--------------TGTEVQSLEF-NSPVTSLEVSQDGR 197 (334)
T ss_pred CCchhhcCCCC-cceeEEEeccCceEEeeccCCceEEEEec--------------cCcEEEEEec-CCCCcceeeccCCC
Confidence 34455543333 3554 46877887666 678888888531 1123333322 22344433322 23
Q ss_pred EEEEecCCCEEEecCCCCCcC
Q 014382 242 TISVSSSGRLYSYGWSKYGQL 262 (425)
Q Consensus 242 ~~~lt~~G~vy~~G~n~~gql 262 (425)
.+.+..-+.|-.|-.+.++.|
T Consensus 198 ilTia~gssV~Fwdaksf~~l 218 (334)
T KOG0278|consen 198 ILTIAYGSSVKFWDAKSFGLL 218 (334)
T ss_pred EEEEecCceeEEeccccccce
Confidence 334444455777777666655
No 72
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=40.36 E-value=3.7e+02 Score=26.45 Aligned_cols=72 Identities=8% Similarity=-0.002 Sum_probs=39.2
Q ss_pred CCeEEEec-cCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeec--CCCCCcEEEEEcCCCeEEEEEcCCCEEEE
Q 014382 19 RPVLLISA-GASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLS--ALDGHEIVSVTCGADHTTAYSESCMQVYS 95 (425)
Q Consensus 19 ~~i~~i~~-g~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~--~~~~~~i~~i~~G~~~~~~lt~~~g~v~~ 95 (425)
.+|+.+.- -....++|.+||.++++- -.|.. .-..+..+. ...+.++-.+..+.+-.++||.+ +++|.
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~------~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~-~~~~~ 151 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF------QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGN-NRFYV 151 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEe--CCCce------eechhhhccccCcccccccccccCCCCEEEECCC-CeEEE
Confidence 45555553 345666777888877662 22322 001111121 11122344445666678888988 99998
Q ss_pred EeCC
Q 014382 96 WGWG 99 (425)
Q Consensus 96 wG~n 99 (425)
--..
T Consensus 152 v~n~ 155 (410)
T PF04841_consen 152 VNNI 155 (410)
T ss_pred EeCc
Confidence 8433
No 73
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=39.80 E-value=2.6e+02 Score=26.47 Aligned_cols=58 Identities=17% Similarity=0.251 Sum_probs=38.9
Q ss_pred EEEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcEEEEecCCceEE--EEeCCCcEEEeee
Q 014382 243 ISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTM--AVTSDGKLYGWGW 308 (425)
Q Consensus 243 ~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~--~lt~~g~v~~wG~ 308 (425)
++..+.|+||.|--.+ ..+...++.........|.|.+...+-++ ++.+++.||.|-.
T Consensus 323 a~gnq~g~v~vwdL~~--------~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDN--------NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred hhccCCCcEEEEECCC--------CCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 3445789999997422 22335566666667777888877666554 4578899998854
No 74
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=39.12 E-value=2.5e+02 Score=27.56 Aligned_cols=18 Identities=22% Similarity=0.277 Sum_probs=15.8
Q ss_pred CceEEEEeCCCcEEEeee
Q 014382 291 WRHTMAVTSDGKLYGWGW 308 (425)
Q Consensus 291 ~~~~~~lt~~g~v~~wG~ 308 (425)
+.|+++++-+|.+|+||-
T Consensus 233 SGcq~~vtpqg~i~vyGG 250 (521)
T KOG1230|consen 233 SGCQFSVTPQGGIVVYGG 250 (521)
T ss_pred CcceEEecCCCcEEEEcc
Confidence 568899999999999984
No 75
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=38.65 E-value=3.4e+02 Score=25.56 Aligned_cols=27 Identities=11% Similarity=0.182 Sum_probs=21.2
Q ss_pred CCCEEEEEeCCCEEEEEEcCCCEEEEeC
Q 014382 123 SLRVKQIACGDSHCLAVTVEGEVQSWGR 150 (425)
Q Consensus 123 ~~~i~~v~~G~~~~~~lt~~G~vy~~G~ 150 (425)
...|+.|.....+.+++. ++++|+|--
T Consensus 94 ~~~I~~V~l~r~riVvvl-~~~I~VytF 120 (346)
T KOG2111|consen 94 NSEIKAVKLRRDRIVVVL-ENKIYVYTF 120 (346)
T ss_pred ccceeeEEEcCCeEEEEe-cCeEEEEEc
Confidence 447999999999998887 556777744
No 76
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=37.27 E-value=3.9e+02 Score=29.20 Aligned_cols=64 Identities=17% Similarity=0.192 Sum_probs=34.2
Q ss_pred eEEEEEcCCCEEEEEeCCCCCCCCCCCC-C-CcccceeecccCCCCEEEEEeCCCEEEEEEcCCCEEEEeC
Q 014382 82 HTTAYSESCMQVYSWGWGDFGRLGHGNS-S-DLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGR 150 (425)
Q Consensus 82 ~~~~lt~~~g~v~~wG~n~~g~lg~~~~-~-~~~~p~~v~~~~~~~i~~v~~G~~~~~~lt~~G~vy~~G~ 150 (425)
.-+.+|.| ++|+.|--|.......-+. + ...+-..++.-.+..+ ..-.|.+++.+.-++|..|-
T Consensus 94 nrcWiT~d-nkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFv----s~i~hlL~vAT~~e~~ilgv 159 (1263)
T COG5308 94 NRCWITND-NKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFV----SRISHLLFVATEKEVMILGV 159 (1263)
T ss_pred cceEEEcC-CEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccH----HhhhhhhhhhhhheeeEEEE
Confidence 35789999 9999998664322111000 0 0111111111111111 12378899999999999985
No 77
>PHA02790 Kelch-like protein; Provisional
Probab=37.25 E-value=1.7e+02 Score=29.47 Aligned_cols=15 Identities=13% Similarity=0.027 Sum_probs=10.9
Q ss_pred EEEEcCCeEEEEeCC
Q 014382 32 VALLSGNIVCSWGRG 46 (425)
Q Consensus 32 ~~l~~~g~v~~wG~n 46 (425)
.+..-+|+||+-|-.
T Consensus 313 ~~v~~~~~iYviGG~ 327 (480)
T PHA02790 313 SGVPANNKLYVVGGL 327 (480)
T ss_pred eEEEECCEEEEECCc
Confidence 344568999999953
No 78
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=36.39 E-value=4e+02 Score=25.64 Aligned_cols=113 Identities=12% Similarity=0.156 Sum_probs=65.7
Q ss_pred CCeEEEeccCCceEEEE--cCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcCCCeEEEEEcC-CCEEEE
Q 014382 19 RPVLLISAGASHSVALL--SGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSES-CMQVYS 95 (425)
Q Consensus 19 ~~i~~i~~g~~~~~~l~--~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~-~g~v~~ 95 (425)
..+-.+++..+..++.| .|.+.|.|-.+..- .+..+..-++ .|..+.....-+++.|-+ .|+|.+
T Consensus 65 ~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge-----------~~~eltgHKD-SVt~~~FshdgtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 65 DSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE-----------FAGELTGHKD-SVTCCSFSHDGTLLATGDMSGKVLV 132 (399)
T ss_pred CceEEEEeCCCCceEEecCCCceEEEEEccCCc-----------ceeEecCCCC-ceEEEEEccCceEEEecCCCccEEE
Confidence 34556666666677777 56778888765432 3344444442 588888888888888764 388888
Q ss_pred EeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeC--CCEEEEEEcCCCEEEEeCCCCCc
Q 014382 96 WGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVEGEVQSWGRNQNGQ 155 (425)
Q Consensus 96 wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G--~~~~~~lt~~G~vy~~G~n~~gq 155 (425)
|-....+. ..++. -....|.-+.-. ....+|=++||.||+|-.++.++
T Consensus 133 ~~~stg~~-----------~~~~~-~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~ 182 (399)
T KOG0296|consen 133 FKVSTGGE-----------QWKLD-QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQAL 182 (399)
T ss_pred EEcccCce-----------EEEee-cccCceEEEEecccccEEEeecCCCcEEEEECCCcce
Confidence 85332110 01111 011123333322 24456668899999998776543
No 79
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=34.09 E-value=46 Score=21.11 Aligned_cols=17 Identities=24% Similarity=0.448 Sum_probs=11.0
Q ss_pred CceEEEEcCCeEEEEeC
Q 014382 29 SHSVALLSGNIVCSWGR 45 (425)
Q Consensus 29 ~~~~~l~~~g~v~~wG~ 45 (425)
.|+++...+++||++|-
T Consensus 4 ~h~~~~~~~~~i~v~GG 20 (49)
T PF13418_consen 4 GHSAVSIGDNSIYVFGG 20 (49)
T ss_dssp S-EEEEE-TTEEEEE--
T ss_pred eEEEEEEeCCeEEEECC
Confidence 57777777899999993
No 80
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=32.97 E-value=3.7e+02 Score=24.30 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=23.8
Q ss_pred ccCCeeecCCCCCcEEEEEcCCCeEEEEEcCCCEEEEE
Q 014382 59 RLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSW 96 (425)
Q Consensus 59 ~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~~g~v~~w 96 (425)
+.+|+++-.-....|.+|-...+..++=..| |+|-++
T Consensus 134 s~ePiQildea~D~V~Si~v~~heIvaGS~D-GtvRty 170 (307)
T KOG0316|consen 134 SFEPIQILDEAKDGVSSIDVAEHEIVAGSVD-GTVRTY 170 (307)
T ss_pred CCCccchhhhhcCceeEEEecccEEEeeccC-CcEEEE
Confidence 3455555443334677777777777777777 877665
No 81
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=32.28 E-value=1.3e+02 Score=28.39 Aligned_cols=59 Identities=20% Similarity=0.289 Sum_probs=37.6
Q ss_pred EEEEcCCCEEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeCC--CEEEEEEcCCCEEEEeC
Q 014382 84 TAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--SHCLAVTVEGEVQSWGR 150 (425)
Q Consensus 84 ~~lt~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~--~~~~~lt~~G~vy~~G~ 150 (425)
+++-...|+||+|--.. .++...++......+..|+|.+... ...+++.+++.||.|-.
T Consensus 322 la~gnq~g~v~vwdL~~--------~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 322 LALGNQSGKVYVWDLDN--------NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred HhhccCCCcEEEEECCC--------CCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 33333349999995221 1222344555555677888888765 55677788999999953
No 82
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=32.08 E-value=2.2e+02 Score=27.69 Aligned_cols=62 Identities=21% Similarity=0.373 Sum_probs=45.5
Q ss_pred CEEEEEeCCCE---EEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeeccCCceEEEEEeCCCeEEEEecCCcEEEee
Q 014382 125 RVKQIACGDSH---CLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWG 201 (425)
Q Consensus 125 ~i~~v~~G~~~---~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~L~~~g~vy~~G 201 (425)
.+..+.+++.+ .+++..+|++..|..+ ..+.+. .....+.+|.--....+|++..|+||++.
T Consensus 161 ~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~--------------~Wt~l~-~~~~~~~DIi~~kGkfYAvD~~G~l~~i~ 225 (373)
T PLN03215 161 ALVKVKEGDNHRDGVLGIGRDGKINYWDGN--------------VLKALK-QMGYHFSDIIVHKGQTYALDSIGIVYWIN 225 (373)
T ss_pred EEEEeecCCCcceEEEEEeecCcEeeecCC--------------eeeEcc-CCCceeeEEEEECCEEEEEcCCCeEEEEe
Confidence 34456777775 7788889999999532 233333 24567889988888889999999999886
No 83
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=31.80 E-value=3.9e+02 Score=24.20 Aligned_cols=65 Identities=20% Similarity=0.262 Sum_probs=35.8
Q ss_pred ecCceEEEEecCCCEEEecCCCCCcCCCCCCCCcccce--------eeccccCCcEE-EEecCCceEEEEeCCCcEEEee
Q 014382 237 CGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPC--------QLEALRESFIS-QISGGWRHTMAVTSDGKLYGWG 307 (425)
Q Consensus 237 ~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~--------~v~~~~~~~i~-~i~~G~~~~~~lt~~g~v~~wG 307 (425)
--++-+..+..||+|+..|-.. .......|. .+..+.. .. ......+=.+.|..+|+||.|+
T Consensus 117 ~RWYpT~~~L~DG~vlIvGG~~-------~~t~E~~P~~~~~~~~~~~~~l~~--~~~~~~~nlYP~~~llPdG~lFi~a 187 (243)
T PF07250_consen 117 GRWYPTATTLPDGRVLIVGGSN-------NPTYEFWPPKGPGPGPVTLPFLSQ--TSDTLPNNLYPFVHLLPDGNLFIFA 187 (243)
T ss_pred CCccccceECCCCCEEEEeCcC-------CCcccccCCccCCCCceeeecchh--hhccCccccCceEEEcCCCCEEEEE
Confidence 3456778888999999988543 111112222 1111111 11 1112233346788899999998
Q ss_pred eCC
Q 014382 308 WNK 310 (425)
Q Consensus 308 ~n~ 310 (425)
.+.
T Consensus 188 n~~ 190 (243)
T PF07250_consen 188 NRG 190 (243)
T ss_pred cCC
Confidence 764
No 84
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=31.36 E-value=7.2e+02 Score=27.09 Aligned_cols=68 Identities=19% Similarity=0.328 Sum_probs=39.5
Q ss_pred ccCCceEEEEcCCe-EEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcCCCeEEEEEcCCCEEEEE
Q 014382 26 AGASHSVALLSGNI-VCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSW 96 (425)
Q Consensus 26 ~g~~~~~~l~~~g~-v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~~g~v~~w 96 (425)
.++...++++.+|+ |+++|.+..=. -.....+...|..+.. .+..|..|++-..|.+.-+++ +.|-..
T Consensus 13 t~G~t~i~~d~~gefi~tcgsdg~ir-~~~~~sd~e~P~ti~~-~g~~v~~ia~~s~~f~~~s~~-~tv~~y 81 (933)
T KOG1274|consen 13 TGGLTLICYDPDGEFICTCGSDGDIR-KWKTNSDEEEPETIDI-SGELVSSIACYSNHFLTGSEQ-NTVLRY 81 (933)
T ss_pred cCceEEEEEcCCCCEEEEecCCCceE-EeecCCcccCCchhhc-cCceeEEEeecccceEEeecc-ceEEEe
Confidence 45667777887775 45666543211 0111122355555543 445788888888888777777 755433
No 85
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=30.86 E-value=63 Score=23.57 Aligned_cols=41 Identities=17% Similarity=0.374 Sum_probs=28.1
Q ss_pred cceEeecCCCCcEEEEEcC-CCeeEEEeCCCCEEEeeCCCCCcc
Q 014382 324 SPVQVKFPLDQKVVQISCG-WRHTLAVTERQNVFSWGRGTNGQL 366 (425)
Q Consensus 324 ~p~~i~~~~~~~i~~i~~G-~~~~~~l~~~g~vy~wG~n~~gqL 366 (425)
.|..+. ....=..|+|. ....++|+.||.+|+-+--+.|++
T Consensus 8 ~Pa~i~--~~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~a 49 (81)
T PF03785_consen 8 HPASIN--LGQTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNA 49 (81)
T ss_dssp --SEEE--TT-SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEE
T ss_pred cccccc--ccccEEEEEecCCCcEEEEecCCEEEEEEEecCceE
Confidence 344443 33455789999 888999999999999997667765
No 86
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=30.35 E-value=98 Score=17.17 Aligned_cols=18 Identities=28% Similarity=0.285 Sum_probs=13.8
Q ss_pred ceEEEEcCCeEEEEeCCC
Q 014382 30 HSVALLSGNIVCSWGRGE 47 (425)
Q Consensus 30 ~~~~l~~~g~v~~wG~n~ 47 (425)
+.++++++|++|+.-.+.
T Consensus 5 ~gvav~~~g~i~VaD~~n 22 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGN 22 (28)
T ss_dssp EEEEEETTSEEEEEECCC
T ss_pred cEEEEeCCCCEEEEECCC
Confidence 467888999999877554
No 87
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=29.32 E-value=9e+02 Score=27.59 Aligned_cols=120 Identities=21% Similarity=0.300 Sum_probs=62.3
Q ss_pred CEEEEEeCCCE-EEEE--EcCCCEEEEeCCCCCccCCCCCCCcccceeeeccCCceEEEE-EeCCCeEEEE-ecCCcEEE
Q 014382 125 RVKQIACGDSH-CLAV--TVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMV-AAGAEHSVAV-AEDGELYG 199 (425)
Q Consensus 125 ~i~~v~~G~~~-~~~l--t~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i-~~G~~~~~~L-~~~g~vy~ 199 (425)
.+.+++....| .+++ ++||.|-+|-.-.. .|.+.. ......-...+.++.++ .|++.+.+|+ ++||.|-.
T Consensus 1050 ~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~--~~~~~s---~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~ 1124 (1431)
T KOG1240|consen 1050 AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKL--EGEGGS---ARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRV 1124 (1431)
T ss_pred cccceeecCCCCceEEEecCCceEEEeeehhh--hcCcce---eeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEE
Confidence 45677777777 5555 46899999964331 222111 11112223345566666 4666665554 67888887
Q ss_pred eeCCCCCCCCCCCCCCCcceeeeeeeecCC-CeEEEEEecC----ce-EEEEecCCCEEEecC
Q 014382 200 WGWGRYGNLGLGDRNDRLIPEKVATVDLQR-EKMVMVACGW----RH-TISVSSSGRLYSYGW 256 (425)
Q Consensus 200 ~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~-~~i~~i~~g~----~~-~~~lt~~G~vy~~G~ 256 (425)
.+-+.+ +.....+..+..++... ..+++..+-. .| .++.|..+.+..|+-
T Consensus 1125 ~~id~~-------~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~ 1180 (1431)
T KOG1240|consen 1125 LRIDHY-------NVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDT 1180 (1431)
T ss_pred EEcccc-------ccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecc
Confidence 775443 12222222222222211 2344443222 12 356677888888874
No 88
>PLN02772 guanylate kinase
Probab=29.31 E-value=1.9e+02 Score=28.36 Aligned_cols=60 Identities=15% Similarity=0.121 Sum_probs=34.7
Q ss_pred EEEEcCCeEEEEe-CCCCCccCCC------CCCCccCCeeecCCCCCcEEEEEcCCCeEEEEEcCCCEEEEEeCC
Q 014382 32 VALLSGNIVCSWG-RGEDGQLGHG------DAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWG 99 (425)
Q Consensus 32 ~~l~~~g~v~~wG-~n~~gqLG~~------~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~~g~v~~wG~n 99 (425)
.+++-+.++|+|| .|+.+.+-.. .+..-..|...-..+. ....|++++..+ .++++.+..
T Consensus 29 tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~-------~r~GhSa~v~~~-~rilv~~~~ 95 (398)
T PLN02772 29 TSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPK-------PCKGYSAVVLNK-DRILVIKKG 95 (398)
T ss_pred eeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCC-------CCCcceEEEECC-ceEEEEeCC
Confidence 4555678999999 4443323221 1112333443333331 236788888888 899999743
No 89
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=27.10 E-value=2.5e+02 Score=27.28 Aligned_cols=62 Identities=15% Similarity=0.188 Sum_probs=44.2
Q ss_pred CeEEEeccCCc---eEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcCCCeEEEEEcCCCEEEEE
Q 014382 20 PVLLISAGASH---SVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSW 96 (425)
Q Consensus 20 ~i~~i~~g~~~---~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~~g~v~~w 96 (425)
-++.+.+++.+ .+++..+|++..|-.+. ...++ .....+.+|..-....+++... |+||.+
T Consensus 161 ~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~--------------Wt~l~-~~~~~~~DIi~~kGkfYAvD~~-G~l~~i 224 (373)
T PLN03215 161 ALVKVKEGDNHRDGVLGIGRDGKINYWDGNV--------------LKALK-QMGYHFSDIIVHKGQTYALDSI-GIVYWI 224 (373)
T ss_pred EEEEeecCCCcceEEEEEeecCcEeeecCCe--------------eeEcc-CCCceeeEEEEECCEEEEEcCC-CeEEEE
Confidence 34445666665 67777899998886432 22332 2345799999999999999888 999998
Q ss_pred e
Q 014382 97 G 97 (425)
Q Consensus 97 G 97 (425)
-
T Consensus 225 ~ 225 (373)
T PLN03215 225 N 225 (373)
T ss_pred e
Confidence 6
No 90
>PHA02146 hypothetical protein
Probab=26.04 E-value=80 Score=22.08 Aligned_cols=35 Identities=29% Similarity=0.541 Sum_probs=25.1
Q ss_pred EEecCceEE-EEecCCCEEEecCCCCCcCCCCCCCC
Q 014382 235 VACGWRHTI-SVSSSGRLYSYGWSKYGQLGHGDFKD 269 (425)
Q Consensus 235 i~~g~~~~~-~lt~~G~vy~~G~n~~gqlg~~~~~~ 269 (425)
|.-|..+++ -|++||.+|+.|-...|.-|..+..+
T Consensus 23 i~ng~ef~v~~~d~dgd~~s~~iswng~dg~s~~ap 58 (86)
T PHA02146 23 ITNGTEFTVTNIDDDGDLYTYDISWNGRDGKSAFAP 58 (86)
T ss_pred cCCCcEEEeeccccCCCeEeecccccCccCCcccCc
Confidence 344544443 57899999999999988887765443
No 91
>PF13964 Kelch_6: Kelch motif
Probab=24.45 E-value=79 Score=20.13 Aligned_cols=19 Identities=16% Similarity=0.335 Sum_probs=13.7
Q ss_pred ceEEEEcCCeEEEEeCCCC
Q 014382 30 HSVALLSGNIVCSWGRGED 48 (425)
Q Consensus 30 ~~~~l~~~g~v~~wG~n~~ 48 (425)
+..++.-+++||++|-...
T Consensus 4 ~~s~v~~~~~iyv~GG~~~ 22 (50)
T PF13964_consen 4 GHSAVVVGGKIYVFGGYDN 22 (50)
T ss_pred cCEEEEECCEEEEECCCCC
Confidence 4455667889999996543
No 92
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.33 E-value=9e+02 Score=25.91 Aligned_cols=144 Identities=16% Similarity=0.058 Sum_probs=0.0
Q ss_pred CCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeeccCCceEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCC
Q 014382 133 DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGD 212 (425)
Q Consensus 133 ~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~L~~~g~vy~~G~n~~gqlg~~~ 212 (425)
+.-.++++++|.++++|. ++...... .........+|...-.-.+..++|+.+|+++.--.++
T Consensus 94 ~eeLI~v~k~g~v~Vy~~-------~ge~ie~~--svg~e~~~~~I~ec~~f~~GVavlt~~g~v~~i~~~~-------- 156 (829)
T KOG2280|consen 94 DEELICVQKDGTVHVYGL-------LGEFIESN--SVGFESQMSDIVECRFFHNGVAVLTVSGQVILINGVE-------- 156 (829)
T ss_pred CceEEEEeccceEEEeec-------chhhhccc--ccccccccCceeEEEEecCceEEEecCCcEEEEcCCC--------
Q ss_pred CCCCcceeeeeeeecCCCeEEEEEecCceEEEEecC---CCEEEecCCCCCcCCCCCCCCcccceeeccccCCcEEEEec
Q 014382 213 RNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSS---GRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISG 289 (425)
Q Consensus 213 ~~~~~~p~~v~~~~~~~~~i~~i~~g~~~~~~lt~~---G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~ 289 (425)
......-+.++...+...-..-+.-+...++.|.-+ |....-+.....|+-.-... ...+.+|+.
T Consensus 157 ~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~------------~~~~~ki~V 224 (829)
T KOG2280|consen 157 EPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWP------------NSSVVKISV 224 (829)
T ss_pred cchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCC------------CceEEEEEE
Q ss_pred C--CceEEEEeCCCcEEE
Q 014382 290 G--WRHTMAVTSDGKLYG 305 (425)
Q Consensus 290 G--~~~~~~lt~~g~v~~ 305 (425)
. ..|.+..|++|++|+
T Consensus 225 S~n~~~laLyt~~G~i~~ 242 (829)
T KOG2280|consen 225 SPNRRFLALYTETGKIWV 242 (829)
T ss_pred cCCcceEEEEecCCcEEE
No 93
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=23.10 E-value=6.9e+02 Score=24.14 Aligned_cols=136 Identities=10% Similarity=0.004 Sum_probs=0.0
Q ss_pred CCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcCCCeEEEEEcCCCEEEEEeCCCCCCCCCC
Q 014382 28 ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHG 107 (425)
Q Consensus 28 ~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~~g~v~~wG~n~~g~lg~~ 107 (425)
+...++.+.+|.+|+.-....-.+-.........| .......++.+.+ |+||+.
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~--------------~~~~~~vy~~~~~-g~l~al----------- 309 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYGSVNDF--------------AVDGGRIYLVDQN-DRVYAL----------- 309 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCCCccCc--------------EEECCEEEEEcCC-CeEEEE-----------
Q ss_pred CCCCcccceeecccCCCCEEEEEeCCCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeeccCCceEEEEEeCCCe
Q 014382 108 NSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEH 187 (425)
Q Consensus 108 ~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~ 187 (425)
+...-..--....+..........-....++.+.+|.||+. +...-..-.........-...-.....+
T Consensus 310 d~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~l-----------d~~tG~~~~~~~~~~~~~~s~P~~~~~~ 378 (394)
T PRK11138 310 DTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWI-----------NREDGRFVAQQKVDSSGFLSEPVVADDK 378 (394)
T ss_pred ECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEE-----------ECCCCCEEEEEEcCCCcceeCCEEECCE
Q ss_pred EEEEecCCcEEEe
Q 014382 188 SVAVAEDGELYGW 200 (425)
Q Consensus 188 ~~~L~~~g~vy~~ 200 (425)
.++.+++|+||.+
T Consensus 379 l~v~t~~G~l~~~ 391 (394)
T PRK11138 379 LLIQARDGTVYAI 391 (394)
T ss_pred EEEEeCCceEEEE
No 94
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=22.56 E-value=1.3e+02 Score=22.05 Aligned_cols=32 Identities=31% Similarity=0.428 Sum_probs=24.6
Q ss_pred eEEEEEeC-CCeEEEEecCCcEEEeeCCCCCCC
Q 014382 177 SIKMVAAG-AEHSVAVAEDGELYGWGWGRYGNL 208 (425)
Q Consensus 177 ~i~~i~~G-~~~~~~L~~~g~vy~~G~n~~gql 208 (425)
.-..|+|. ....++|++||.+|.-+--+.|++
T Consensus 17 tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~a 49 (81)
T PF03785_consen 17 TSISVSCDVPGSYVALSQDGDLYGKAIVNSGNA 49 (81)
T ss_dssp SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEE
T ss_pred cEEEEEecCCCcEEEEecCCEEEEEEEecCceE
Confidence 45679999 888999999999999886555544
No 95
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=22.07 E-value=6.2e+02 Score=24.28 Aligned_cols=158 Identities=20% Similarity=0.216 Sum_probs=73.8
Q ss_pred EEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCC--------Cccee-eeeeeecCCC-eEEEEEecCceEEEEecC
Q 014382 179 KMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRND--------RLIPE-KVATVDLQRE-KMVMVACGWRHTISVSSS 248 (425)
Q Consensus 179 ~~i~~G~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~--------~~~p~-~v~~~~~~~~-~i~~i~~g~~~~~~lt~~ 248 (425)
=.|.+|....+++..+|+-+.-=.-.+.+..++...+ ...|. .|.. +.. +. .+.-+.+.+.|+.|
T Consensus 31 Gmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~i---P~k~R~--~~~~~~~~~~ls~d 105 (342)
T PF06433_consen 31 GMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEI---PPKPRA--QVVPYKNMFALSAD 105 (342)
T ss_dssp EEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEE---TTS-B----BS--GGGEEE-TT
T ss_pred EEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEec---CCcchh--eecccccceEEccC
Confidence 4477888888888888764332212222333333211 11121 2221 121 33 23356778899988
Q ss_pred CC-EEEecCCCCCcCCCCCCCCcccceeeccccCCc---------EEEE-ecCCceEEEEeCCCcEEEeeeCCCCCcccC
Q 014382 249 GR-LYSYGWSKYGQLGHGDFKDHLVPCQLEALRESF---------ISQI-SGGWRHTMAVTSDGKLYGWGWNKFGQVGVG 317 (425)
Q Consensus 249 G~-vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~---------i~~i-~~G~~~~~~lt~~g~v~~wG~n~~gqLG~~ 317 (425)
|+ +|.+-. ++...- .|-.+...+ +..| -.|......+-.||.+........|+.-
T Consensus 106 gk~~~V~N~-----------TPa~SV-tVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~-- 171 (342)
T PF06433_consen 106 GKFLYVQNF-----------TPATSV-TVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEA-- 171 (342)
T ss_dssp SSEEEEEEE-----------SSSEEE-EEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEE--
T ss_pred CcEEEEEcc-----------CCCCeE-EEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEe--
Confidence 87 555421 111111 111122211 2222 1344455667788888887777666542
Q ss_pred CCCCcccceEeecCCCCcEEE---EEcCCCeeEEEeCCCCEEEeeC
Q 014382 318 DNVDHCSPVQVKFPLDQKVVQ---ISCGWRHTLAVTERQNVFSWGR 360 (425)
Q Consensus 318 ~~~~~~~p~~i~~~~~~~i~~---i~~G~~~~~~l~~~g~vy~wG~ 360 (425)
.+..++-.+.+..+.. ......+.++++=+|+||.--.
T Consensus 172 -----~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dl 212 (342)
T PF06433_consen 172 -----QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADL 212 (342)
T ss_dssp -----EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEE
T ss_pred -----EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEec
Confidence 1222332332333321 2235567788899999998643
No 96
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=21.40 E-value=1.1e+02 Score=19.45 Aligned_cols=17 Identities=12% Similarity=0.130 Sum_probs=12.7
Q ss_pred ceEEEEcCCeEEEEeCC
Q 014382 30 HSVALLSGNIVCSWGRG 46 (425)
Q Consensus 30 ~~~~l~~~g~v~~wG~n 46 (425)
...++.-++++|+||--
T Consensus 4 ~hs~~~~~~kiyv~GG~ 20 (49)
T PF07646_consen 4 GHSAVVLDGKIYVFGGY 20 (49)
T ss_pred ceEEEEECCEEEEECCc
Confidence 34555779999999954
No 97
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=21.20 E-value=9.3e+02 Score=24.92 Aligned_cols=191 Identities=14% Similarity=0.060 Sum_probs=0.0
Q ss_pred CCceEEEEcCCeEEEEeCCCCCc--cCCCCCCCccCCeeecCCCCCcEEEEEcCCCeEEEEEcCCCEEEEEeCCCCCCCC
Q 014382 28 ASHSVALLSGNIVCSWGRGEDGQ--LGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLG 105 (425)
Q Consensus 28 ~~~~~~l~~~g~v~~wG~n~~gq--LG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~~g~v~~wG~n~~g~lg 105 (425)
.+..+.-+.+|+|.+|.--..+. .-.-.......+..+...- -.+..-+ .-.+-+..| |+|-.|
T Consensus 255 p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vv---W~~~~~~-~~f~s~ssD-G~i~~W--------- 320 (555)
T KOG1587|consen 255 PNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVV---WLQNEHN-TEFFSLSSD-GSICSW--------- 320 (555)
T ss_pred cceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEE---EeccCCC-CceEEEecC-CcEeee---------
Q ss_pred CCCCCCcccceeecccCCCC--------------EEEEEeCCCEEEEEEcCCCEEE-EeCCCCCccCCCCCCCcccceee
Q 014382 106 HGNSSDLFTPLPIKALHSLR--------------VKQIACGDSHCLAVTVEGEVQS-WGRNQNGQLGLGTTEDSLVPQKL 170 (425)
Q Consensus 106 ~~~~~~~~~p~~v~~~~~~~--------------i~~v~~G~~~~~~lt~~G~vy~-~G~n~~gqlg~~~~~~~~~p~~~ 170 (425)
.......|.....+.... ++....-.+|.++-|+.|.||. .-.+..-+.. ....+...
T Consensus 321 --~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~-----~~~~~~~~ 393 (555)
T KOG1587|consen 321 --DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE-----VSYKGHST 393 (555)
T ss_pred --eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc-----cccccccc
Q ss_pred eccCCceEEEEEeCCCeEEEEecCC----cEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEecCce---EE
Q 014382 171 QAFEGVSIKMVAAGAEHSVAVAEDG----ELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRH---TI 243 (425)
Q Consensus 171 ~~~~~~~i~~i~~G~~~~~~L~~~g----~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~g~~~---~~ 243 (425)
...-...|..|.....|--..+.-| ++|.-+... .++..+......+.+++=...| .+
T Consensus 394 ~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~---------------~Pl~~~~~~~~~v~~vaWSptrpavF~ 458 (555)
T KOG1587|consen 394 FITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA---------------SPLLSLDSSPDYVTDVAWSPTRPAVFA 458 (555)
T ss_pred ccccCcceEeeecCCCccceeeeeccceeEeccccCCC---------------CcchhhhhccceeeeeEEcCcCceEEE
Q ss_pred EEecCCCEEEe
Q 014382 244 SVSSSGRLYSY 254 (425)
Q Consensus 244 ~lt~~G~vy~~ 254 (425)
+.+.+|+|+.|
T Consensus 459 ~~d~~G~l~iW 469 (555)
T KOG1587|consen 459 TVDGDGNLDIW 469 (555)
T ss_pred EEcCCCceehh
No 98
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).
Probab=20.88 E-value=4.3e+02 Score=20.95 Aligned_cols=61 Identities=15% Similarity=0.208 Sum_probs=33.2
Q ss_pred EEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEE-ecCceEEEEecCCCEEEe
Q 014382 181 VAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVA-CGWRHTISVSSSGRLYSY 254 (425)
Q Consensus 181 i~~G~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~-~g~~~~~~lt~~G~vy~~ 254 (425)
+.|-..+.+.+..||+|-.-. +..+...--.+.... ..++.|. +-...-+++++.|+||+-
T Consensus 3 Ly~~~~~~L~I~~dG~V~Gt~----------~~~~~~s~l~~~s~~---~g~v~i~~v~s~~YLCmn~~G~ly~s 64 (123)
T cd00058 3 LYCRTGFHLQILPDGTVDGTR----------DDSSSYTILERIAVA---VGVVSIKGVASCRYLCMNKCGKLYGS 64 (123)
T ss_pred EEEcCCeEEEEcCCCcEeccc----------CCCCCCceEEEEECC---CCEEEEEEcccceEEEECCCCCEEEC
Confidence 444446677888899887432 112112222222222 2333333 334567889999999973
No 99
>PLN02772 guanylate kinase
Probab=20.52 E-value=2.5e+02 Score=27.49 Aligned_cols=62 Identities=15% Similarity=0.066 Sum_probs=35.1
Q ss_pred ceEEEEecCCCEEEecC-CCCCcCCCC------CCCCcccceeeccccCCcEEEEecCCceEEEEeCCCcEEEeeeC
Q 014382 240 RHTISVSSSGRLYSYGW-SKYGQLGHG------DFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWN 309 (425)
Q Consensus 240 ~~~~~lt~~G~vy~~G~-n~~gqlg~~------~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~v~~wG~n 309 (425)
.|+++.- ..++|.||- |+.+++... .+.....|...-..+. +...|++++-.+.++++.+..
T Consensus 27 ~~tav~i-gdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~-------~r~GhSa~v~~~~rilv~~~~ 95 (398)
T PLN02772 27 RETSVTI-GDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPK-------PCKGYSAVVLNKDRILVIKKG 95 (398)
T ss_pred cceeEEE-CCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCC-------CCCcceEEEECCceEEEEeCC
Confidence 3554444 468999994 444434321 1222334443322222 234699999999999998753
Done!