Query 014382
Match_columns 425
No_of_seqs 282 out of 2178
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 10:34:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014382.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014382hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4d9s_A UVB-resistance protein 100.0 1.8E-82 6.2E-87 622.6 45.4 398 12-411 9-406 (406)
2 3kci_A Probable E3 ubiquitin-p 100.0 1.3E-73 4.5E-78 556.9 33.8 371 23-398 5-379 (389)
3 3mvd_K Regulator of chromosome 100.0 5.7E-71 2E-75 544.8 37.9 374 12-398 17-410 (423)
4 1a12_A RCC1, regulator of chro 100.0 2.1E-70 7.2E-75 538.8 38.1 367 23-398 12-401 (413)
5 3of7_A Regulator of chromosome 100.0 1.3E-69 4.5E-74 541.5 35.2 378 16-399 7-443 (473)
6 3kci_A Probable E3 ubiquitin-p 100.0 5.9E-68 2E-72 517.1 35.3 333 18-353 52-388 (389)
7 4d9s_A UVB-resistance protein 100.0 2.6E-65 8.8E-70 501.0 39.2 342 71-417 16-362 (406)
8 1a12_A RCC1, regulator of chro 100.0 2.1E-64 7.1E-69 496.2 37.5 338 11-355 51-412 (413)
9 3mvd_K Regulator of chromosome 100.0 4.7E-63 1.6E-67 488.3 42.3 336 10-354 66-420 (423)
10 3of7_A Regulator of chromosome 100.0 7E-62 2.4E-66 485.6 37.6 327 17-351 65-449 (473)
11 3qhy_B Beta-lactamase inhibito 100.0 9.3E-53 3.2E-57 390.7 28.9 260 12-356 17-276 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 9.7E-52 3.3E-56 383.8 29.9 251 38-368 2-252 (282)
13 1p22_A F-BOX/WD-repeat protein 97.8 0.025 8.7E-07 54.4 34.5 282 18-362 133-414 (435)
14 2ovr_B FBW7, F-BOX/WD repeat p 97.5 0.08 2.7E-06 50.9 34.8 268 21-362 122-391 (445)
15 2zwa_A Leucine carboxyl methyl 96.9 0.28 9.6E-06 50.5 24.6 150 80-256 441-615 (695)
16 2zwa_A Leucine carboxyl methyl 96.7 0.33 1.1E-05 50.0 23.5 104 133-256 441-558 (695)
17 1p22_A F-BOX/WD-repeat protein 96.6 0.55 1.9E-05 44.8 34.4 229 72-360 135-363 (435)
18 4gbf_A Phikz131; 7-bladed beta 96.3 0.0055 1.9E-07 53.2 6.0 85 19-117 309-396 (400)
19 2ovr_B FBW7, F-BOX/WD repeat p 96.3 0.86 2.9E-05 43.5 37.6 231 17-309 158-390 (445)
20 1k3i_A Galactose oxidase precu 96.2 1.4 4.7E-05 44.9 27.7 72 239-312 457-533 (656)
21 4gbf_A Phikz131; 7-bladed beta 96.0 0.018 6.3E-07 50.0 7.5 72 282-366 309-380 (400)
22 4aez_A CDC20, WD repeat-contai 95.0 2.4 8.3E-05 39.7 32.0 267 24-362 99-380 (401)
23 3v7d_B Cell division control p 94.7 3 0.0001 39.7 36.1 279 21-362 125-421 (464)
24 1k3i_A Galactose oxidase precu 94.6 4.5 0.00015 41.0 27.1 72 291-364 457-533 (656)
25 3k26_A Polycomb protein EED; W 94.4 2.9 9.8E-05 38.0 32.7 304 18-360 18-364 (366)
26 1sq9_A Antiviral protein SKI8; 94.4 3.2 0.00011 38.4 29.8 255 16-309 14-321 (397)
27 3no0_A DNA gyrase subunit A; D 93.6 3.9 0.00013 36.6 21.1 216 18-263 23-251 (276)
28 3mmy_A MRNA export factor; mRN 93.6 4.1 0.00014 36.9 25.4 236 70-362 39-304 (368)
29 1gxr_A ESG1, transducin-like e 93.0 4.7 0.00016 36.0 36.6 277 25-362 8-296 (337)
30 3k26_A Polycomb protein EED; W 92.9 5.2 0.00018 36.2 26.6 258 19-307 70-363 (366)
31 3odt_A Protein DOA1; ubiquitin 92.9 4.6 0.00016 35.6 29.6 185 71-309 105-295 (313)
32 4g56_B MGC81050 protein; prote 92.4 6.6 0.00023 36.1 34.8 233 72-363 96-344 (357)
33 3no0_A DNA gyrase subunit A; D 91.9 6.6 0.00023 35.1 19.2 217 123-368 23-252 (276)
34 3zwl_B Eukaryotic translation 91.8 7.2 0.00024 35.2 33.1 200 18-256 32-247 (369)
35 4asc_A Kelch repeat and BTB do 91.1 8.4 0.00029 34.6 15.9 18 239-257 140-157 (315)
36 3odt_A Protein DOA1; ubiquitin 90.6 8.4 0.00029 33.8 34.0 269 17-361 17-295 (313)
37 3i2n_A WD repeat-containing pr 90.5 9.5 0.00033 34.3 30.9 288 18-360 18-351 (357)
38 1gxr_A ESG1, transducin-like e 90.4 9.2 0.00031 34.0 30.1 236 79-362 10-255 (337)
39 4a11_B DNA excision repair pro 89.3 13 0.00044 34.1 32.9 301 17-363 42-366 (408)
40 4aez_A CDC20, WD repeat-contai 89.0 14 0.0005 34.2 29.7 225 75-361 98-335 (401)
41 3v7d_B Cell division control p 88.7 16 0.00056 34.4 33.3 241 73-362 125-381 (464)
42 1pgu_A Actin interacting prote 88.3 20 0.00069 35.0 31.4 186 72-309 162-365 (615)
43 2uvk_A YJHT; unknown function, 88.2 15 0.00052 33.5 17.3 18 133-151 110-127 (357)
44 3ii7_A Kelch-like protein 7; p 86.9 16 0.00055 32.4 17.9 61 185-256 93-157 (306)
45 3uc1_A DNA gyrase subunit A; D 86.8 19 0.00064 33.0 20.7 222 129-368 49-285 (327)
46 2woz_A Kelch repeat and BTB do 86.6 18 0.0006 32.5 16.1 62 185-256 101-166 (318)
47 1pgu_A Actin interacting prote 86.4 26 0.00088 34.3 29.9 149 177-360 448-612 (615)
48 3jrp_A Fusion protein of prote 85.9 19 0.00066 32.4 30.0 238 72-361 13-286 (379)
49 3jrp_A Fusion protein of prote 85.6 20 0.00069 32.3 29.0 242 18-309 11-286 (379)
50 3sfz_A APAF-1, apoptotic pepti 85.1 47 0.0016 36.1 26.0 192 125-360 1046-1247(1249)
51 3uc1_A DNA gyrase subunit A; D 84.9 23 0.00079 32.4 23.7 220 25-263 50-284 (327)
52 4gga_A P55CDC, cell division c 84.5 26 0.0009 32.6 32.0 141 28-202 115-259 (420)
53 2vpj_A Kelch-like protein 12; 83.7 23 0.00078 31.3 14.8 60 186-257 152-215 (301)
54 3vl1_A 26S proteasome regulato 82.8 29 0.001 31.9 33.1 267 25-362 65-365 (420)
55 3no2_A Uncharacterized protein 82.7 25 0.00084 31.0 25.8 167 174-368 86-267 (276)
56 3ii7_A Kelch-like protein 7; p 82.3 26 0.0009 31.0 17.6 59 186-256 193-255 (306)
57 1r5m_A SIR4-interacting protei 81.9 31 0.0011 31.6 31.2 238 19-309 109-360 (425)
58 2vpj_A Kelch-like protein 12; 81.6 18 0.00062 32.0 12.3 59 186-256 199-261 (301)
59 1zgk_A Kelch-like ECH-associat 80.8 30 0.001 30.7 15.2 17 239-256 207-223 (308)
60 3fvz_A Peptidyl-glycine alpha- 80.7 32 0.0011 30.9 20.4 22 78-100 23-44 (329)
61 1q7f_A NHL, brain tumor CG1071 80.6 28 0.00095 30.2 24.9 16 241-256 210-225 (286)
62 3gre_A Serine/threonine-protei 79.7 39 0.0013 31.4 24.0 161 18-202 63-243 (437)
63 3jro_A Fusion protein of prote 78.8 61 0.0021 33.1 27.8 245 18-310 9-285 (753)
64 3i2n_A WD repeat-containing pr 78.8 35 0.0012 30.3 27.7 238 71-361 19-290 (357)
65 1sq9_A Antiviral protein SKI8; 78.0 41 0.0014 30.6 25.3 119 71-203 17-156 (397)
66 3p6j_A De novo designed beta-t 77.9 24 0.00081 27.9 10.7 108 123-253 29-138 (142)
67 2xyi_A Probable histone-bindin 77.6 47 0.0016 31.1 26.2 200 82-309 196-409 (430)
68 4a11_B DNA excision repair pro 77.1 43 0.0015 30.4 28.8 207 70-310 43-276 (408)
69 3mkq_A Coatomer beta'-subunit; 77.0 68 0.0023 32.7 31.6 231 19-310 14-259 (814)
70 1rwi_B Serine/threonine-protei 75.7 37 0.0013 28.9 18.9 15 293-307 237-251 (270)
71 4ery_A WD repeat-containing pr 75.4 42 0.0014 29.4 32.1 269 19-360 24-310 (312)
72 3gre_A Serine/threonine-protei 75.0 53 0.0018 30.4 19.6 117 18-151 111-244 (437)
73 1xip_A Nucleoporin NUP159; bet 74.8 41 0.0014 31.5 12.7 108 61-200 80-187 (388)
74 4asc_A Kelch repeat and BTB do 74.1 47 0.0016 29.5 15.3 16 240-256 91-106 (315)
75 2ymu_A WD-40 repeat protein; u 73.9 66 0.0023 31.0 31.2 219 72-358 346-576 (577)
76 1zgk_A Kelch-like ECH-associat 73.4 40 0.0014 29.9 12.1 17 239-256 160-176 (308)
77 2aq5_A Coronin-1A; WD40 repeat 73.2 56 0.0019 29.9 29.7 154 24-202 40-205 (402)
78 3p6j_A De novo designed beta-t 72.0 34 0.0012 26.9 13.4 107 174-305 28-138 (142)
79 2xn4_A Kelch-like protein 2; s 71.8 52 0.0018 28.9 13.9 16 134-150 101-116 (302)
80 1wp5_A Topoisomerase IV; broke 71.5 60 0.002 29.5 22.3 227 128-370 45-285 (323)
81 1q7f_A NHL, brain tumor CG1071 70.6 52 0.0018 28.4 24.4 16 293-308 210-225 (286)
82 1xip_A Nucleoporin NUP159; bet 70.5 55 0.0019 30.6 12.5 98 178-306 90-187 (388)
83 3jro_A Fusion protein of prote 70.1 1E+02 0.0034 31.5 27.8 241 72-362 11-285 (753)
84 4ggc_A P55CDC, cell division c 70.1 54 0.0019 28.4 32.7 141 28-202 35-179 (318)
85 3vgz_A Uncharacterized protein 68.1 64 0.0022 28.5 28.5 17 345-361 317-334 (353)
86 3mkq_A Coatomer beta'-subunit; 68.1 1.1E+02 0.0037 31.1 27.5 230 72-362 15-259 (814)
87 1r5m_A SIR4-interacting protei 67.6 72 0.0025 28.9 31.6 237 72-361 110-360 (425)
88 1zi0_A DNA gyrase subunit A; b 67.3 71 0.0024 28.7 25.0 217 24-259 49-278 (307)
89 1suu_A DNA gyrase subunit A; t 66.0 76 0.0026 28.6 21.5 219 133-369 8-238 (312)
90 4g56_B MGC81050 protein; prote 65.8 78 0.0027 28.6 30.2 236 72-360 44-299 (357)
91 2xn4_A Kelch-like protein 2; s 63.8 76 0.0026 27.8 18.3 59 186-256 101-163 (302)
92 4aow_A Guanine nucleotide-bind 63.8 76 0.0026 27.8 32.6 282 18-358 38-333 (340)
93 4gqb_B Methylosome protein 50; 63.3 86 0.003 28.3 34.3 230 72-360 84-329 (344)
94 1yfq_A Cell cycle arrest prote 60.0 89 0.0031 27.4 24.5 204 124-363 12-226 (342)
95 4gqb_B Methylosome protein 50; 58.6 1E+02 0.0036 27.7 29.1 229 19-308 83-329 (344)
96 2woz_A Kelch repeat and BTB do 58.5 98 0.0033 27.3 14.3 17 239-256 101-117 (318)
97 1vyh_C Platelet-activating fac 58.3 1.1E+02 0.0039 28.1 31.5 264 19-359 109-408 (410)
98 2aq5_A Coronin-1A; WD40 repeat 57.9 1.1E+02 0.0038 27.8 28.8 153 76-256 40-205 (402)
99 1suu_A DNA gyrase subunit A; t 57.0 1.1E+02 0.0038 27.5 23.3 261 29-310 9-283 (312)
100 2pm9_A Protein WEB1, protein t 56.9 1.1E+02 0.0039 27.6 22.7 244 17-310 66-337 (416)
101 1yfq_A Cell cycle arrest prote 54.4 1.1E+02 0.0038 26.7 28.4 248 72-361 13-281 (342)
102 1zi0_A DNA gyrase subunit A; b 54.2 1.2E+02 0.0041 27.1 23.6 217 129-363 49-278 (307)
103 2pm9_A Protein WEB1, protein t 53.9 1.3E+02 0.0044 27.3 27.0 243 72-363 69-338 (416)
104 3sfz_A APAF-1, apoptotic pepti 53.6 2.4E+02 0.0082 30.4 30.7 147 19-202 616-772 (1249)
105 2uvk_A YJHT; unknown function, 53.0 34 0.0012 31.0 7.6 65 185-256 57-126 (357)
106 2xyi_A Probable histone-bindin 52.7 1.4E+02 0.0049 27.5 27.5 260 72-361 130-409 (430)
107 4e54_B DNA damage-binding prot 51.6 1.5E+02 0.0052 27.4 23.3 191 18-256 119-325 (435)
108 3l6v_A GYRA, DNA gyrase subuni 49.4 1.6E+02 0.0056 27.2 24.4 125 24-158 53-186 (370)
109 1wp5_A Topoisomerase IV; broke 49.0 1.5E+02 0.0052 26.7 24.4 223 76-314 46-281 (323)
110 3zwl_B Eukaryotic translation 48.8 1.4E+02 0.0048 26.2 26.3 209 62-309 25-248 (369)
111 3no2_A Uncharacterized protein 48.4 1.4E+02 0.0046 26.0 30.3 164 123-315 87-266 (276)
112 2ymu_A WD-40 repeat protein; u 48.3 1.9E+02 0.0065 27.6 32.7 221 72-360 264-496 (577)
113 3q7x_A De novo designed beta-t 48.0 93 0.0032 24.0 11.0 105 126-254 8-114 (132)
114 1erj_A Transcriptional repress 46.1 1.7E+02 0.0059 26.5 28.2 238 73-360 126-387 (393)
115 1zvt_A Topoisomerase IV subuni 45.8 1.5E+02 0.0051 25.7 14.9 158 83-264 5-169 (256)
116 3ei3_B DNA damage-binding prot 43.4 1.8E+02 0.0062 26.0 25.8 192 71-310 74-282 (383)
117 4aow_A Guanine nucleotide-bind 43.1 1.7E+02 0.0057 25.4 27.1 94 136-256 188-284 (340)
118 3ei3_B DNA damage-binding prot 39.9 2E+02 0.007 25.6 27.8 194 17-258 72-282 (383)
119 3mmy_A MRNA export factor; mRN 38.0 2E+02 0.007 25.0 28.4 149 17-202 38-197 (368)
120 3v9f_A Two-component system se 35.1 3.7E+02 0.013 27.2 17.8 17 293-309 631-647 (781)
121 1zvu_A Topoisomerase IV subuni 34.8 3.3E+02 0.011 27.6 11.5 124 236-368 511-639 (716)
122 3q7x_A De novo designed beta-t 34.6 1.6E+02 0.0053 22.7 12.8 103 178-305 8-113 (132)
123 4gga_A P55CDC, cell division c 33.4 2.8E+02 0.0096 25.3 26.9 140 80-256 115-259 (420)
124 3l6v_A GYRA, DNA gyrase subuni 32.6 3E+02 0.01 25.3 25.6 126 76-209 53-185 (370)
125 3dw8_B Serine/threonine-protei 32.3 2.9E+02 0.0099 25.1 28.2 33 15-47 25-59 (447)
126 1k8k_C P40, ARP2/3 complex 41 31.9 2.6E+02 0.0089 24.5 33.5 251 18-310 8-274 (372)
127 1zvu_A Topoisomerase IV subuni 31.5 3.9E+02 0.013 27.1 11.4 124 130-264 511-639 (716)
128 1k8k_C P40, ARP2/3 complex 41 30.0 2.8E+02 0.0096 24.3 29.2 248 72-362 10-274 (372)
129 1zvt_A Topoisomerase IV subuni 30.0 2.7E+02 0.0092 24.0 16.1 156 31-209 5-168 (256)
130 1l0q_A Surface layer protein; 29.3 3E+02 0.01 24.4 18.7 230 30-306 35-271 (391)
131 3iz6_a 40S ribosomal protein R 28.8 3.2E+02 0.011 24.5 25.1 196 135-361 172-374 (380)
132 3hrp_A Uncharacterized protein 26.8 3.8E+02 0.013 24.7 22.3 215 30-311 134-401 (409)
133 3f3f_A Nucleoporin SEH1; struc 23.6 3.4E+02 0.012 23.1 30.6 123 18-152 11-143 (351)
134 3vgz_A Uncharacterized protein 23.1 3.7E+02 0.013 23.3 23.6 17 293-309 317-334 (353)
135 2pbi_B Guanine nucleotide-bind 22.4 4.1E+02 0.014 23.5 35.6 185 125-358 156-353 (354)
136 1vyh_C Platelet-activating fac 22.3 4.4E+02 0.015 23.9 27.4 146 72-256 110-263 (410)
137 3bws_A Protein LP49; two-domai 22.0 4.4E+02 0.015 23.7 26.1 26 125-150 213-241 (433)
138 1got_B GT-beta; complex (GTP-b 21.9 4E+02 0.014 23.3 34.3 270 19-358 56-339 (340)
139 2dg1_A DRP35, lactonase; beta 21.9 3.9E+02 0.013 23.1 11.2 15 241-255 90-104 (333)
140 1bfg_A Basic fibroblast growth 21.3 3E+02 0.01 21.5 7.2 70 16-96 15-85 (146)
141 3sjl_D Methylamine dehydrogena 21.0 5E+02 0.017 24.0 16.1 167 126-307 72-253 (386)
142 3snv_A Symfoil-4T/permutation 20.4 3.1E+02 0.01 21.3 12.1 98 185-309 18-118 (143)
143 3vu4_A KMHSV2; beta-propeller 20.3 4.5E+02 0.015 23.2 29.2 159 124-310 101-271 (355)
No 1
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=1.8e-82 Score=622.61 Aligned_cols=398 Identities=83% Similarity=1.410 Sum_probs=368.3
Q ss_pred cCCCCCCCCeEEEeccCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcCCCeEEEEEcCCC
Q 014382 12 STTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCM 91 (425)
Q Consensus 12 ~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~~g 91 (425)
++..+++.+|++|+||..|+++|++||+||+||+|.+||||.+...++..|.++..+.+.+|++|+||..|+++|+++++
T Consensus 9 ~~v~~~~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg 88 (406)
T 4d9s_A 9 DEVTAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGM 88 (406)
T ss_dssp ------CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTT
T ss_pred ccCCCCccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCC
Confidence 44556778999999999999999999999999999999999999999999999999988899999999999999999834
Q ss_pred EEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeCCCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeee
Q 014382 92 QVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQ 171 (425)
Q Consensus 92 ~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~ 171 (425)
+||+||.|.+||||.++......|.++..+.+.+|++|+||..|+++|+++|+||+||.|.+||||.++......|+++.
T Consensus 89 ~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~ 168 (406)
T 4d9s_A 89 EVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQ 168 (406)
T ss_dssp EEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECG
T ss_pred EEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEec
Confidence 99999999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred ccCCceEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEecCceEEEEecCCCE
Q 014382 172 AFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRL 251 (425)
Q Consensus 172 ~~~~~~i~~i~~G~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~g~~~~~~lt~~G~v 251 (425)
.+.+.+|++|+||.+|+++|+++|+||+||.|.+||||++.......|.++..+. ..+|++|+||.+|+++|+++|+|
T Consensus 169 ~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~--~~~i~~va~G~~ht~~l~~~G~v 246 (406)
T 4d9s_A 169 AFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTG--GEKMSMVACGWRHTISVSYSGAL 246 (406)
T ss_dssp GGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCST--TCCEEEEEECSSEEEEEETTCCE
T ss_pred ccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccC--CceEEEEEECCCcEEEEcCCCCE
Confidence 9988899999999999999999999999999999999999988888888886543 67899999999999999999999
Q ss_pred EEecCCCCCcCCCCCCCCcccceeeccccCCcEEEEecCCceEEEEeCCCcEEEeeeCCCCCcccCCCCCcccceEeecC
Q 014382 252 YSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFP 331 (425)
Q Consensus 252 y~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqLG~~~~~~~~~p~~i~~~ 331 (425)
|+||.|.+||||+++......|.+++.+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.++......|.++.++
T Consensus 247 ~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~ 326 (406)
T 4d9s_A 247 YTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP 326 (406)
T ss_dssp EEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCG
T ss_pred EEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEecc
Confidence 99999999999999999999999999999889999999999999999999999999999999999999999999999988
Q ss_pred CCCcEEEEEcCCCeeEEEeCCCCEEEeeCCCCCccCCCCCCCCCCCeEeeecccCCCceEEeeccccCCCCCcccccCCc
Q 014382 332 LDQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSKGQNIASSKYDPSSGKTWVSPSE 411 (425)
Q Consensus 332 ~~~~i~~i~~G~~~~~~l~~~g~vy~wG~n~~gqLG~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (425)
...+|++|+||.+|++||+++|+||+||+|.+||||+|+..++..|.+++.+..++....+++.+.+.+..++.|++|+|
T Consensus 327 ~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~g~~~~~~~~~~~~~~~~~~w~~~~~ 406 (406)
T 4d9s_A 327 DDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVDGASGQHIESSNIDPSSGKSWVSPAE 406 (406)
T ss_dssp GGCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGCSCSSCCCCCBCTTSCTTC---------
T ss_pred CCCcEEEEEeCCCeEEEEeCCCCEEEecCCCCCccCCCCCCCCcCCEEeeeecCCCceeeEEEecccccccCccccCcCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999876
No 2
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.3e-73 Score=556.93 Aligned_cols=371 Identities=30% Similarity=0.578 Sum_probs=329.9
Q ss_pred EEeccCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcCCCeEEEEEcCCCEEEEEeCCCCC
Q 014382 23 LISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFG 102 (425)
Q Consensus 23 ~i~~g~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~~g~v~~wG~n~~g 102 (425)
++..-...+++|++||+||+||.|.+||||.++......|.++..+...+|++|+||..|+++|+++ |+||+||.|..|
T Consensus 5 ~~~~~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~-G~v~~wG~n~~G 83 (389)
T 3kci_A 5 HHHSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTAD-GKLYATGYGAGG 83 (389)
T ss_dssp ----------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETT-SCEEEEECCGGG
T ss_pred ccccCcccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCC-CcEEEEECCCCC
Confidence 3445667889999999999999999999999888888899999988888899999999999999999 999999999999
Q ss_pred CCCCCCCCCcccceeecccCCCC--EEEEEeCCCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeeccCCceEEE
Q 014382 103 RLGHGNSSDLFTPLPIKALHSLR--VKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKM 180 (425)
Q Consensus 103 ~lg~~~~~~~~~p~~v~~~~~~~--i~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~ 180 (425)
|||.++......|.+++.+.... +++|+||..|+++|+++|+||+||.|.+||||.++......|.++..+.+.+|++
T Consensus 84 qLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ 163 (389)
T 3kci_A 84 RLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVD 163 (389)
T ss_dssp TTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEE
T ss_pred CCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEE
Confidence 99999988888999998877664 4788899999999999999999999999999999998889999999998889999
Q ss_pred EEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEecC--ceEEEEecCCCEEEecCCC
Q 014382 181 VAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW--RHTISVSSSGRLYSYGWSK 258 (425)
Q Consensus 181 i~~G~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~g~--~~~~~lt~~G~vy~~G~n~ 258 (425)
|+||..|+++|+++|+||+||.|.+||||.+.......|.++..+. ..+|++|+||. .|+++|+++|+||+||.|.
T Consensus 164 va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~--~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~ 241 (389)
T 3kci_A 164 VAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQ--GHRVVDIACGSGDAQTLCLTDDDTVWSWGDGD 241 (389)
T ss_dssp EEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGT--TSCEEEEEECCSSCEEEEEETTTEEEEEECCG
T ss_pred EEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccC--CCeEEEEEEcCCCcEEEEEccCCEEEEEeCCC
Confidence 9999999999999999999999999999999988888888886544 77899999995 8999999999999999999
Q ss_pred CCcCCCCCCCCcccceeeccccCCcEEEEecCCceEEEEeCCCcEEEeeeCCCCCcccCCCCCcccceEeecCCCCcEEE
Q 014382 259 YGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQ 338 (425)
Q Consensus 259 ~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~ 338 (425)
+||||.+.......|.+++.+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.++......|.+++.+...+|++
T Consensus 242 ~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ 321 (389)
T 3kci_A 242 YGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIA 321 (389)
T ss_dssp GGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEE
T ss_pred CCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEE
Confidence 99999999888899999999988889999999999999999999999999999999999999889999999888889999
Q ss_pred EEcCCCeeEEEeCCCCEEEeeCCCCCccCCCCCCCCCCCeEeeecccCCCceEEeecccc
Q 014382 339 ISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSKGQNIASSKY 398 (425)
Q Consensus 339 i~~G~~~~~~l~~~g~vy~wG~n~~gqLG~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 398 (425)
|+||.+|+++|+++|+||+||+|.+||||+|+..++..|.+++.+ .+.+..+|+++..
T Consensus 322 ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~--~~~~v~~va~G~~ 379 (389)
T 3kci_A 322 IATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAAL--QGKKVNRVACGSA 379 (389)
T ss_dssp EEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGG--TTSCCCEEEEETT
T ss_pred EEeccCeEEEECCCCCEEEeeCCCCCcCCCCCCCCccCcEEeccc--CCCCEEEEEecCC
Confidence 999999999999999999999999999999999888888888754 4556667766544
No 3
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=5.7e-71 Score=544.84 Aligned_cols=374 Identities=27% Similarity=0.405 Sum_probs=317.1
Q ss_pred cCCCCCCCCeEEEeccCCceEEEEcCCeEEEEeCCCCCccCCCCC-CCccCCeeecCCCCCcEEEEEcCCCeEEEEEcCC
Q 014382 12 STTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDA-EDRLSPTQLSALDGHEIVSVTCGADHTTAYSESC 90 (425)
Q Consensus 12 ~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqLG~~~~-~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~~ 90 (425)
..+.++..++.+|++|..|+++++++|+||+||.|.+||||++.. .....|.++..+. .|++|+||..|+++|+++
T Consensus 17 ~~~~~~~~~~~~ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~--~v~~va~G~~h~~~l~~~- 93 (423)
T 3mvd_K 17 AEQQPPKAKRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIP--DAVDISAGGMHNLVLTKS- 93 (423)
T ss_dssp ------------CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCS--SEEEEEECSSEEEEEETT-
T ss_pred CCCCCccceeeEEecCCccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCC--CceEEeeCCCeEEEEeCC-
Confidence 445777788999999999999999999999999999999999875 4567899888877 599999999999999999
Q ss_pred CEEEEEeCCCCCCCCCCCCCC--cccceeecccCCCCEEEEEeCCCEEEEEEcCCCEEEEeC--CCCCccCCCCCCCccc
Q 014382 91 MQVYSWGWGDFGRLGHGNSSD--LFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGR--NQNGQLGLGTTEDSLV 166 (425)
Q Consensus 91 g~v~~wG~n~~g~lg~~~~~~--~~~p~~v~~~~~~~i~~v~~G~~~~~~lt~~G~vy~~G~--n~~gqlg~~~~~~~~~ 166 (425)
|+||+||.|.+||||++.... ...|.++.. ..+|++|+||..|+++|+++|+||+||. |.+||||.+.......
T Consensus 94 G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~--~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~ 171 (423)
T 3mvd_K 94 GDIYSFGCNDEGALGRDTSEDGSESKPDLIDL--PGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRT 171 (423)
T ss_dssp SCEEEEECCSSSTTCSCCCSTTSSSSCEECCC--SSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEE
T ss_pred CeEEEeECCCCcCCCCCCcCCccccCCeEEcC--CCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCce
Confidence 999999999999999988754 566777764 3489999999999999999999999998 9999999987766555
Q ss_pred ceeeeccCCceEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCC-----------CCcceeeeeeeecCCCeEEEE
Q 014382 167 PQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRN-----------DRLIPEKVATVDLQREKMVMV 235 (425)
Q Consensus 167 p~~~~~~~~~~i~~i~~G~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~-----------~~~~p~~v~~~~~~~~~i~~i 235 (425)
|.. .+...+|++|+||.+|+++|+++|+||+||.|.+||||.+... ....|.++... ...+|++|
T Consensus 172 p~~--~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~--~~~~v~~i 247 (423)
T 3mvd_K 172 PID--LMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIIT--RAKPFEAI 247 (423)
T ss_dssp EEE--SSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCT--TCCCEEEE
T ss_pred eeE--ecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeec--CCccEEEE
Confidence 544 4567789999999999999999999999999999999997652 34567776543 36789999
Q ss_pred EecCceEEEE-ecCCCEEEecCCCCCcCCCCCCCC--cccceeeccccCCcEEEEecCCceEEEEeCCCcEEEeeeCCCC
Q 014382 236 ACGWRHTISV-SSSGRLYSYGWSKYGQLGHGDFKD--HLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFG 312 (425)
Q Consensus 236 ~~g~~~~~~l-t~~G~vy~~G~n~~gqlg~~~~~~--~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~g 312 (425)
+||.+|++++ +++|+||+||.|.++|||.+.... ...|.++. ..+|++|+||.+|+++|+++|+||+||.|.+|
T Consensus 248 ~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~---~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~G 324 (423)
T 3mvd_K 248 WATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE---LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYG 324 (423)
T ss_dssp EEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC---CCSEEEEEECSSEEEEEETTCCEEEEECCGGG
T ss_pred EECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC---CCCeEEEEcccCeEEEEeCCCcEEEEECCCCC
Confidence 9999999999 599999999999999999955433 34555554 34599999999999999999999999999999
Q ss_pred CcccCCCCC-cccceEeecCCCCcEEEEEcCCCeeEEEeCCCCEEEeeCCCCCccCCCCCCCCCCCeEeeecccCCCceE
Q 014382 313 QVGVGDNVD-HCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSKGQ 391 (425)
Q Consensus 313 qLG~~~~~~-~~~p~~i~~~~~~~i~~i~~G~~~~~~l~~~g~vy~wG~n~~gqLG~g~~~~~~~p~~~~~~~~~~~~~~ 391 (425)
|||.++... ...|.+++.+.. +|++|+||.+|+++|+++|+||+||.|.+||||+|+..++..|.+|+.+.+.+....
T Consensus 325 qLG~g~~~~~~~~p~~v~~l~~-~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~~~v~ 403 (423)
T 3mvd_K 325 RLGLGDVKDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHML 403 (423)
T ss_dssp TTCSSSCCSCEEEEEECTTCCS-CEEEEEEETTEEEEEETTSCEEEEECCTTSCSSSSSSCCEEEEEECCSTTTTTCCEE
T ss_pred CCCCCCccccccCceEeccCCC-CEEEEEcCCCeEEEEcCCCCEEEECCCCCCCCCCCCCCCcccCeEEeCcccCCCEEE
Confidence 999998766 357888876655 899999999999999999999999999999999999999999999998778888888
Q ss_pred Eeecccc
Q 014382 392 NIASSKY 398 (425)
Q Consensus 392 ~~~~~~~ 398 (425)
.|+++..
T Consensus 404 ~va~G~~ 410 (423)
T 3mvd_K 404 LASGGGQ 410 (423)
T ss_dssp EEEECSS
T ss_pred EEEECCC
Confidence 8887765
No 4
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=2.1e-70 Score=538.83 Aligned_cols=367 Identities=32% Similarity=0.504 Sum_probs=318.0
Q ss_pred EEeccCCceEEEEcCCeEEEEeCCCCCccCCCCCCC-ccCCeeecCCCCCcEEEEEcCCCeEEEEEcCCCEEEEEeCCCC
Q 014382 23 LISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAED-RLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDF 101 (425)
Q Consensus 23 ~i~~g~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~-~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~~g~v~~wG~n~~ 101 (425)
+.+.+..|+++|+++|+||+||.|.+||||++.... ...|.++..+ .+|++|+||..|+++|+++ |+||+||.|.+
T Consensus 12 ~~~~~~~h~~~l~~~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~~--~~i~~va~G~~hs~~l~~~-G~v~~wG~n~~ 88 (413)
T 1a12_A 12 SKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP--EDVVQAEAGGMHTVCLSKS-GQVYSFGCNDE 88 (413)
T ss_dssp -CCCCCCCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCS--SCEEEEEECSSEEEEEETT-SCEEEEECCTT
T ss_pred hhhhccccceeecCCCcEEEEECCCCCcCCCCCCccccccceEccCC--CCeEEEEeCCCeEEEEcCC-CCEEEEECCCC
Confidence 556678999999999999999999999999988654 6788888865 4799999999999999999 99999999999
Q ss_pred CCCCCCCCC--CcccceeecccCCCCEEEEEeCCCEEEEEEcCCCEEEEeC--CCCCccCCCCCCCc-ccceeeeccCCc
Q 014382 102 GRLGHGNSS--DLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGR--NQNGQLGLGTTEDS-LVPQKLQAFEGV 176 (425)
Q Consensus 102 g~lg~~~~~--~~~~p~~v~~~~~~~i~~v~~G~~~~~~lt~~G~vy~~G~--n~~gqlg~~~~~~~-~~p~~~~~~~~~ 176 (425)
||||+++.. ....|.++.. ..+|++|+||..|+++|+++|+||+||. |.+||||.+..... ..|.++ +...
T Consensus 89 GqLG~~~~~~~~~~~P~~v~l--~~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v--~~~~ 164 (413)
T 1a12_A 89 GALGRDTSVEGSEMVPGKVEL--QEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV--QLDV 164 (413)
T ss_dssp STTCSCCCSTTGGGSCEECCC--CSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEE--CCSS
T ss_pred CCCCCCCCCCccccCCeEecC--CCcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEe--cCCC
Confidence 999998763 4567777743 3489999999999999999999999998 89999998876543 347766 4466
Q ss_pred eEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCC-----------Ccceeeeeeeec---CCCeEEEEEecCceE
Q 014382 177 SIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRND-----------RLIPEKVATVDL---QREKMVMVACGWRHT 242 (425)
Q Consensus 177 ~i~~i~~G~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~-----------~~~p~~v~~~~~---~~~~i~~i~~g~~~~ 242 (425)
+|++|+||.+|+++|+++|+||+||.|.+||||.+.... ...|..+..... ...+|++|+||.+|+
T Consensus 165 ~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs 244 (413)
T 1a12_A 165 PVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFT 244 (413)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEE
T ss_pred CEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEE
Confidence 899999999999999999999999999999999875421 145554543211 346899999999999
Q ss_pred EEEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccC--CcEEEEecCCceEEEEeCCCcEEEeeeCCCCCcccC-CC
Q 014382 243 ISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRE--SFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVG-DN 319 (425)
Q Consensus 243 ~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~--~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqLG~~-~~ 319 (425)
++|+++|+||+||.|.+||||.++......|.++..+.+ .+|++|+||.+|+++|+++|+||+||.|.+||||.+ +.
T Consensus 245 ~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~ 324 (413)
T 1a12_A 245 FAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGA 324 (413)
T ss_dssp EEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTC
T ss_pred EEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCC
Confidence 999999999999999999999999888889999998876 679999999999999999999999999999999998 45
Q ss_pred CCcccceEeecCCCCcEEEEEcCCCeeEEEeCCCCEEEeeCCCCCccCCCCCCCCCCCeEeeecccCCCceEEeecccc
Q 014382 320 VDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSKGQNIASSKY 398 (425)
Q Consensus 320 ~~~~~p~~i~~~~~~~i~~i~~G~~~~~~l~~~g~vy~wG~n~~gqLG~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 398 (425)
.....|++++.+ .+|++|+||.+|+++|+++|+||+||.|.+||||+++..+...|.+++...+.+.....|+++..
T Consensus 325 ~~~~~P~~v~~l--~~v~~v~~G~~hs~alt~~G~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~~~v~~v~~G~~ 401 (413)
T 1a12_A 325 EEKSIPTLISRL--PAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQ 401 (413)
T ss_dssp CCEEEEEECCSS--SSEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTTTTTEEEEEEEECSS
T ss_pred ccccCCEEeccc--CceeEEEECcceEEEEeCCCCEEEecCCCCCCCCCCCCCCcccCeEccccccCCCeEEEEeeCCC
Confidence 566778888755 38999999999999999999999999999999999998888888888876667777788877654
No 5
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-69 Score=541.46 Aligned_cols=378 Identities=25% Similarity=0.411 Sum_probs=322.2
Q ss_pred CCCCCeEEEeccCCceEEEEcCCeEEEEeCCCCCccCCCCC---CCccCCeeecCC--CCCcEEEEEcCCCeEEEEEcCC
Q 014382 16 APFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDA---EDRLSPTQLSAL--DGHEIVSVTCGADHTTAYSESC 90 (425)
Q Consensus 16 ~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqLG~~~~---~~~~~p~~v~~~--~~~~i~~i~~G~~~~~~lt~~~ 90 (425)
.+...|....+...|+++++++|+||+||.|.+||||++.. .+...|.+++.+ ...+|++|+||..|+++|+++
T Consensus 7 ~~~~~~~~~~~~~~h~~~~~~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~- 85 (473)
T 3of7_A 7 HHMSHIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEE- 85 (473)
T ss_dssp --CTTCCCCGGGGHHHHCCSSCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETT-
T ss_pred hhhhhhhhhcccccccccCCCCccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEeCCCeEEEEecC-
Confidence 35567778888999999999999999999999999999985 345678887766 456899999999999999999
Q ss_pred CEEEEEeCCCCCCCCCCCCCC-----------------------cccceeecc--c----CCCCEEEEEeCCCEEEEEEc
Q 014382 91 MQVYSWGWGDFGRLGHGNSSD-----------------------LFTPLPIKA--L----HSLRVKQIACGDSHCLAVTV 141 (425)
Q Consensus 91 g~v~~wG~n~~g~lg~~~~~~-----------------------~~~p~~v~~--~----~~~~i~~v~~G~~~~~~lt~ 141 (425)
|+||+||.|..||||++.... ...|.++.. + .+.+|++|+||..|+++|++
T Consensus 86 G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~ 165 (473)
T 3of7_A 86 SNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFS 165 (473)
T ss_dssp CCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEET
T ss_pred CeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeC
Confidence 999999999999999987654 456777764 4 36799999999999999999
Q ss_pred CCCEEEEeC--CCCCccCCCCC--CCcccceeeeccCCceEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCC--
Q 014382 142 EGEVQSWGR--NQNGQLGLGTT--EDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRND-- 215 (425)
Q Consensus 142 ~G~vy~~G~--n~~gqlg~~~~--~~~~~p~~~~~~~~~~i~~i~~G~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~-- 215 (425)
+|+||+||. +..||||.+.. .....|.++..+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+....
T Consensus 166 ~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~ 245 (473)
T 3of7_A 166 NGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFR 245 (473)
T ss_dssp TSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGT
T ss_pred CCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCcccccc
Confidence 999999998 67899998544 356678888888888899999999999999999999999999999999886543
Q ss_pred --CcceeeeeeeecCCCeEEEEEecCceEEEEecCCCEEEecCCCCCcCCCCCCC----CcccceeeccccCCcEEEEec
Q 014382 216 --RLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFK----DHLVPCQLEALRESFISQISG 289 (425)
Q Consensus 216 --~~~p~~v~~~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~----~~~~p~~v~~~~~~~i~~i~~ 289 (425)
...|.++. ..+|++|+||.+|+++|+++|+||+||.|.+||||.+... ....|.++..+.+.+|++|+|
T Consensus 246 ~~~~~p~~~~-----~~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~ 320 (473)
T 3of7_A 246 LKTLDPRPFG-----LRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAA 320 (473)
T ss_dssp TTTCSCEECS-----CCSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEEE
T ss_pred ccccCceecC-----CcceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCCccEEEEEe
Confidence 34455542 2589999999999999999999999999999999998754 345788998888888999999
Q ss_pred CCceEEEEeCCCcEEEeeeCCCCCcccCCCC------------CcccceEeecCCCCcEEEEEcCCCeeEEEeCCCCEEE
Q 014382 290 GWRHTMAVTSDGKLYGWGWNKFGQVGVGDNV------------DHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFS 357 (425)
Q Consensus 290 G~~~~~~lt~~g~v~~wG~n~~gqLG~~~~~------------~~~~p~~i~~~~~~~i~~i~~G~~~~~~l~~~g~vy~ 357 (425)
|.+|+++|+++|+||+||.|.+||||.+... ....+.+..++...+|++|+||.+|++||+++|+||+
T Consensus 321 G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~v~~Ia~G~~hs~al~~~G~vy~ 400 (473)
T 3of7_A 321 GEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQNGIAYS 400 (473)
T ss_dssp CSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSCCEEEEEECSSEEEEEETTSCEEE
T ss_pred CCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCCceEEEEeCCCeEEEEeCCCcEEE
Confidence 9999999999999999999999999986531 1122333333333489999999999999999999999
Q ss_pred eeCCCCCccCCCC-CCCCCCCeEeeecccCCCceEEeeccccC
Q 014382 358 WGRGTNGQLGHGE-SSDRNSPKIIEPLSLDGSKGQNIASSKYD 399 (425)
Q Consensus 358 wG~n~~gqLG~g~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 399 (425)
||.|.+||||+|+ ..+...|++|+.+...+.....|+++...
T Consensus 401 wG~n~~GqLG~g~~~~~~~~P~~v~~~~~~~~~v~~v~cG~~~ 443 (473)
T 3of7_A 401 WGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQF 443 (473)
T ss_dssp EECCTTCTTCCCSCCSCEEEEEECCCTTTTTEEEEEEEECSSE
T ss_pred eeCCCCCCCCCCCCCccccCCeEecccccCCCeEEEEeeCCCe
Confidence 9999999999999 77888999999888888888888877653
No 6
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=5.9e-68 Score=517.06 Aligned_cols=333 Identities=31% Similarity=0.563 Sum_probs=313.0
Q ss_pred CCCeEEEeccCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCc--EEEEEcCCCeEEEEEcCCCEEEE
Q 014382 18 FRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHE--IVSVTCGADHTTAYSESCMQVYS 95 (425)
Q Consensus 18 ~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~--i~~i~~G~~~~~~lt~~~g~v~~ 95 (425)
..+|++|++|..|+++|++||+||+||.|.+||||.+..+....|.+++.+.+.. +++|+||..|+++|+++ |+||+
T Consensus 52 ~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~-G~v~~ 130 (389)
T 3kci_A 52 TLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSE-GEVYS 130 (389)
T ss_dssp HTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETT-SCEEE
T ss_pred CCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCC-CCEEE
Confidence 3489999999999999999999999999999999999988889999999887654 47889999999999999 99999
Q ss_pred EeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeCCCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeeccCC
Q 014382 96 WGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEG 175 (425)
Q Consensus 96 wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~ 175 (425)
||.|.+||||.++......|.+++.+.+.+|++|+||..|+++|+++|+||+||.|.+||||.++......|+++..+.+
T Consensus 131 wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~ 210 (389)
T 3kci_A 131 WGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQG 210 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTT
T ss_pred EeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCC
Confidence 99999999999999888999999999888999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEeCC--CeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEecCceEEEEecCCCEEE
Q 014382 176 VSIKMVAAGA--EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYS 253 (425)
Q Consensus 176 ~~i~~i~~G~--~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~g~~~~~~lt~~G~vy~ 253 (425)
.+|++|+||. .|+++|+++|+||+||.|.+||||.+.......|.++..+. +.+|++|+||.+|+++|+++|+||+
T Consensus 211 ~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~--~~~v~~v~~G~~hs~alt~~G~v~~ 288 (389)
T 3kci_A 211 HRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLT--GLGVVKVECGSQFSVALTKSGAVYT 288 (389)
T ss_dssp SCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGT--TSCEEEEEEETTEEEEEETTSCEEE
T ss_pred CeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccC--CCcEEEEeCCCCEEEEEeCCCeEEE
Confidence 9999999995 89999999999999999999999999888888888886544 6789999999999999999999999
Q ss_pred ecCCCCCcCCCCCCCCcccceeeccccCCcEEEEecCCceEEEEeCCCcEEEeeeCCCCCcccCCCCCcccceEeecCCC
Q 014382 254 YGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLD 333 (425)
Q Consensus 254 ~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqLG~~~~~~~~~p~~i~~~~~ 333 (425)
||.|.+||||+++......|.++..+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.++......|++++.+..
T Consensus 289 wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~ 368 (389)
T 3kci_A 289 WGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQG 368 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTT
T ss_pred EeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCCCCCCccCcEEecccCC
Confidence 99999999999998888999999999888999999999999999999999999999999999999999999999988888
Q ss_pred CcEEEEEcCCCeeEEEeCCC
Q 014382 334 QKVVQISCGWRHTLAVTERQ 353 (425)
Q Consensus 334 ~~i~~i~~G~~~~~~l~~~g 353 (425)
.+|++|+||.+|++||++++
T Consensus 369 ~~v~~va~G~~ht~al~~~~ 388 (389)
T 3kci_A 369 KKVNRVACGSAHTLAWSTSK 388 (389)
T ss_dssp SCCCEEEEETTEEEEECC--
T ss_pred CCEEEEEecCCcEEEEecCC
Confidence 89999999999999998764
No 7
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=2.6e-65 Score=500.97 Aligned_cols=342 Identities=35% Similarity=0.683 Sum_probs=313.0
Q ss_pred CcEEEEEcCCCeEEEEEcCCCEEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeCCCEEEEEEcCC-CEEEEe
Q 014382 71 HEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEG-EVQSWG 149 (425)
Q Consensus 71 ~~i~~i~~G~~~~~~lt~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~~lt~~G-~vy~~G 149 (425)
.+|++|+||..|+++|+++ |+||+||.|.+||||+++..+...|.++..+.+.+|++|+||..|+++|+++| +||+||
T Consensus 16 ~~v~~ia~G~~hs~al~~~-g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG 94 (406)
T 4d9s_A 16 RKVLIISAGASHSVALLSG-DIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWG 94 (406)
T ss_dssp CCEEEEEECSSEEEEEETT-TEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEE
T ss_pred cceEEEecCCCeEEEEEeC-CEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEc
Confidence 4799999999999999999 99999999999999999999999999999888889999999999999999986 999999
Q ss_pred CCCCCccCCCCCCCcccceeeeccCCceEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCC
Q 014382 150 RNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQR 229 (425)
Q Consensus 150 ~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~ 229 (425)
.|.+||||.+.......|.++..+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.......|.++..+. +
T Consensus 95 ~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~--~ 172 (406)
T 4d9s_A 95 WGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFE--G 172 (406)
T ss_dssp CCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGT--T
T ss_pred CCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccC--C
Confidence 99999999999988889999998888899999999999999999999999999999999999988888888887544 6
Q ss_pred CeEEEEEecCceEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcEEEEecCCceEEEEeCCCcEEEeeeC
Q 014382 230 EKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWN 309 (425)
Q Consensus 230 ~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~v~~wG~n 309 (425)
.+|++|+||.+|+++|+++|+||+||.|.+||||.++......|.++..+...+|++|+||.+|+++|+++|+||+||.|
T Consensus 173 ~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n 252 (406)
T 4d9s_A 173 IRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWS 252 (406)
T ss_dssp CCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred CcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEeeCC
Confidence 79999999999999999999999999999999999998889999999988888899999999999999999999999999
Q ss_pred CCCCcccCCCCCcccceEeecCCCCcEEEEEcCCCeeEEEeCCCCEEEeeCCCCCccCCCCCCCCCCCeEeeecccCCCc
Q 014382 310 KFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSK 389 (425)
Q Consensus 310 ~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~l~~~g~vy~wG~n~~gqLG~g~~~~~~~p~~~~~~~~~~~~ 389 (425)
.+||||.++......|.+++.+...+|++|+||.+|+++|+++|+||+||+|.+||||+++..+...|.+++.+. ...
T Consensus 253 ~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~--~~~ 330 (406)
T 4d9s_A 253 KYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPD--DQK 330 (406)
T ss_dssp TTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGG--GCC
T ss_pred CCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccC--CCc
Confidence 999999999988899999988888889999999999999999999999999999999999988888888887553 345
Q ss_pred eEEeecccc----CCCCCcccccCCccccccC
Q 014382 390 GQNIASSKY----DPSSGKTWVSPSERYAVVP 417 (425)
Q Consensus 390 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 417 (425)
..+|++... ...+|.+|.|+.-++--+.
T Consensus 331 v~~va~G~~hs~alt~~G~v~~wG~n~~GqLG 362 (406)
T 4d9s_A 331 VVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 362 (406)
T ss_dssp EEEEEECSSEEEEEETTSCEEEEECCTTSTTC
T ss_pred EEEEEeCCCeEEEEeCCCCEEEecCCCCCccC
Confidence 666666544 2337889988876664443
No 8
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=2.1e-64 Score=496.19 Aligned_cols=338 Identities=26% Similarity=0.476 Sum_probs=293.7
Q ss_pred ccCCCCCCCCeEEEeccCCceEEEEcCCeEEEEeCCCCCccCCCCCC--CccCCeeecCCCCCcEEEEEcCCCeEEEEEc
Q 014382 11 ASTTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAE--DRLSPTQLSALDGHEIVSVTCGADHTTAYSE 88 (425)
Q Consensus 11 ~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~--~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~ 88 (425)
.|..+....+|++|+||..|+++|++||+||+||.|.+||||.+... ....|.++.. . .+|++|+||..|+++|++
T Consensus 51 ~P~~v~~~~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~l-~-~~i~~va~G~~hs~alt~ 128 (413)
T 1a12_A 51 KPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVEL-Q-EKVVQVSAGDSHTAALTD 128 (413)
T ss_dssp EEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCC-C-SCEEEEEECSSEEEEEET
T ss_pred cceEccCCCCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEecC-C-CcEEEEecCCCeEEEEcC
Confidence 45555567899999999999999999999999999999999998763 4667888854 3 389999999999999999
Q ss_pred CCCEEEEEeC--CCCCCCCCCCCCCc-ccceeecccCCCCEEEEEeCCCEEEEEEcCCCEEEEeCCCCCccCCCCCCC--
Q 014382 89 SCMQVYSWGW--GDFGRLGHGNSSDL-FTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTED-- 163 (425)
Q Consensus 89 ~~g~v~~wG~--n~~g~lg~~~~~~~-~~p~~v~~~~~~~i~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~-- 163 (425)
+ |+||+||. |.+||||.+..... ..|.++ +...+|++|+||..|+++|+++|+||+||.|.+||||.+....
T Consensus 129 ~-G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v--~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~ 205 (413)
T 1a12_A 129 D-GRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV--QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFAN 205 (413)
T ss_dssp T-SCEEEEECEEETTEEEESSBBTBCEEEEEEE--CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSS
T ss_pred C-CcEEEeeCCcCCCCccCcCCccccccCCEEe--cCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCcccccc
Confidence 9 99999999 99999998776433 346666 4567999999999999999999999999999999999875421
Q ss_pred ---------cccceeeecc-----CCceEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCC
Q 014382 164 ---------SLVPQKLQAF-----EGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQR 229 (425)
Q Consensus 164 ---------~~~p~~~~~~-----~~~~i~~i~~G~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~ 229 (425)
...|+.+... ...+|++|+||.+|+++|+++|+||+||.|.+||||.+.......|.++..+....
T Consensus 206 ~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~ 285 (413)
T 1a12_A 206 RGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNST 285 (413)
T ss_dssp SCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTT
T ss_pred ccccccccccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCC
Confidence 2456555432 34689999999999999999999999999999999999888888888887655223
Q ss_pred CeEEEEEecCceEEEEecCCCEEEecCCCCCcCCCC-CCCCcccceeeccccCCcEEEEecCCceEEEEeCCCcEEEeee
Q 014382 230 EKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHG-DFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGW 308 (425)
Q Consensus 230 ~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~-~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~v~~wG~ 308 (425)
.+|++|+||.+|+++|+++|+||+||.|.+||||.+ +......|.++..+. +|++|+||.+|+++|+++|+||+||.
T Consensus 286 ~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~--~v~~v~~G~~hs~alt~~G~v~~wG~ 363 (413)
T 1a12_A 286 KSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP--AVSSVACGASVGYAVTKDGRVFAWGM 363 (413)
T ss_dssp CCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSS--SEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred ceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecccC--ceeEEEECcceEEEEeCCCCEEEecC
Confidence 679999999999999999999999999999999998 556677899998776 59999999999999999999999999
Q ss_pred CCCCCcccCCCCCcccceEeecC--CCCcEEEEEcCCCeeEEEeCCCCE
Q 014382 309 NKFGQVGVGDNVDHCSPVQVKFP--LDQKVVQISCGWRHTLAVTERQNV 355 (425)
Q Consensus 309 n~~gqLG~~~~~~~~~p~~i~~~--~~~~i~~i~~G~~~~~~l~~~g~v 355 (425)
|.+||||.++..+...|+++..+ ...+|++|+||.+|+++|+++|++
T Consensus 364 n~~gqLG~g~~~~~~~P~~v~~~~~~~~~v~~v~~G~~ht~~l~~~g~~ 412 (413)
T 1a12_A 364 GTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKEQ 412 (413)
T ss_dssp CTTSTTCSSSCSCEEEEEECCSTTTTTEEEEEEEECSSEEEEEEEECSC
T ss_pred CCCCCCCCCCCCCcccCeEccccccCCCeEEEEeeCCCcEEEEEecCCC
Confidence 99999999999888889998753 456899999999999999998864
No 9
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=4.7e-63 Score=488.33 Aligned_cols=336 Identities=25% Similarity=0.399 Sum_probs=294.1
Q ss_pred cccCCCCCCCCeEEEeccCCceEEEEcCCeEEEEeCCCCCccCCCCCCC--ccCCeeecCCCCCcEEEEEcCCCeEEEEE
Q 014382 10 AASTTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAED--RLSPTQLSALDGHEIVSVTCGADHTTAYS 87 (425)
Q Consensus 10 ~~~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~--~~~p~~v~~~~~~~i~~i~~G~~~~~~lt 87 (425)
..|+.+....+|++|+||..|+++|++||+||+||.|.+||||.+.... ...|.++.... +|++|+||..|+++|+
T Consensus 66 ~~p~~v~~l~~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~--~i~~va~G~~hs~al~ 143 (423)
T 3mvd_K 66 KRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPG--KALCISAGDSHSACLL 143 (423)
T ss_dssp EEEEECCSCSSEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSS--CEEEEEECSSEEEEEE
T ss_pred cCCeEccCCCCceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCC--CEEEEEcCcCeEEEEe
Confidence 3456677778999999999999999999999999999999999988754 67788887544 7999999999999999
Q ss_pred cCCCEEEEEeC--CCCCCCCCCCCCCcccceeecccCCCCEEEEEeCCCEEEEEEcCCCEEEEeCCCCCccCCCCCC---
Q 014382 88 ESCMQVYSWGW--GDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTE--- 162 (425)
Q Consensus 88 ~~~g~v~~wG~--n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~--- 162 (425)
++ |+||+||. |.+||||.+..... +.|+..+...+|++|+||..|+++|+++|+||+||.|.+||||.+...
T Consensus 144 ~~-G~v~~wG~~~n~~GqlG~~~~~~~--~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~ 220 (423)
T 3mvd_K 144 ED-GRVFAWGSFRDSHGNMGLTIDGNK--RTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSIS 220 (423)
T ss_dssp TT-SCEEEEECEECSSSEEESBTTBCE--EEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTT
T ss_pred CC-CeEEEEeCCCCCCCCcCcCCCCCC--ceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccc
Confidence 99 99999999 99999999877655 445555667799999999999999999999999999999999997653
Q ss_pred --------CcccceeeeccCCceEEEEEeCCCeEEEE-ecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEE
Q 014382 163 --------DSLVPQKLQAFEGVSIKMVAAGAEHSVAV-AEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMV 233 (425)
Q Consensus 163 --------~~~~p~~~~~~~~~~i~~i~~G~~~~~~L-~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~ 233 (425)
....|.++......+|++|+||.+|++++ +++|+||+||.|.+||||.+.......+.++.. . ..+|+
T Consensus 221 ~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~-~--~~~v~ 297 (423)
T 3mvd_K 221 GEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKT-E--LKDIR 297 (423)
T ss_dssp SCSTTTTTTTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEE-C--CCSEE
T ss_pred cccccccccccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEc-C--CCCeE
Confidence 34578888877778999999999999999 699999999999999999966554443333322 1 35899
Q ss_pred EEEecCceEEEEecCCCEEEecCCCCCcCCCCCCCC-cccceeeccccCCcEEEEecCCceEEEEeCCCcEEEeeeCCCC
Q 014382 234 MVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKD-HLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFG 312 (425)
Q Consensus 234 ~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~-~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~g 312 (425)
+|+||.+|+++|+++|+||+||.|.+||||.++... ...|..++.+.. +|++|+||.+|+++|+++|+||+||.|.+|
T Consensus 298 ~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~-~v~~ia~G~~hs~alt~~G~v~~wG~n~~G 376 (423)
T 3mvd_K 298 HIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNN 376 (423)
T ss_dssp EEEECSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCS-CEEEEEEETTEEEEEETTSCEEEEECCTTS
T ss_pred EEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCC-CEEEEEcCCCeEEEEcCCCCEEEECCCCCC
Confidence 999999999999999999999999999999998766 457888888776 799999999999999999999999999999
Q ss_pred CcccCCCCCcccceEeec--CCCCcEEEEEcCCCeeEEEeCCCC
Q 014382 313 QVGVGDNVDHCSPVQVKF--PLDQKVVQISCGWRHTLAVTERQN 354 (425)
Q Consensus 313 qLG~~~~~~~~~p~~i~~--~~~~~i~~i~~G~~~~~~l~~~g~ 354 (425)
|||.++..+...|+++.. +...+|++|+||.+|+++|+++++
T Consensus 377 qLG~g~~~~~~~P~~v~~~~~~~~~v~~va~G~~ht~~l~~~~k 420 (423)
T 3mvd_K 377 QLGVGDGDDELEPIVVVSKNTQGKHMLLASGGGQHAIFLVKADK 420 (423)
T ss_dssp CSSSSSSCCEEEEEECCSTTTTTCCEEEEEECSSEEEEEEECC-
T ss_pred CCCCCCCCCcccCeEEeCcccCCCEEEEEEECCCcEEEEEcccc
Confidence 999999999999999985 456789999999999999998864
No 10
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7e-62 Score=485.64 Aligned_cols=327 Identities=26% Similarity=0.484 Sum_probs=280.4
Q ss_pred CCCCeEEEeccCCceEEEEcCCeEEEEeCCCCCccCCCCCCC-----------------------ccCCeeecC--C---
Q 014382 17 PFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAED-----------------------RLSPTQLSA--L--- 68 (425)
Q Consensus 17 ~~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~-----------------------~~~p~~v~~--~--- 68 (425)
...+|++|+||..|+++|+++|+||+||.|.+||||.+.... ...|.+|.. +
T Consensus 65 ~~~~i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~ 144 (473)
T 3of7_A 65 DEAKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPL 144 (473)
T ss_dssp TTTCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHH
T ss_pred CCCCEEEEEeCCCeEEEEecCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcc
Confidence 446999999999999999999999999999999999987654 567888875 5
Q ss_pred -CCCcEEEEEcCCCeEEEEEcCCCEEEEEeC--CCCCCCCCCCC--CCcccceeecccCCCCEEEEEeCCCEEEEEEcCC
Q 014382 69 -DGHEIVSVTCGADHTTAYSESCMQVYSWGW--GDFGRLGHGNS--SDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEG 143 (425)
Q Consensus 69 -~~~~i~~i~~G~~~~~~lt~~~g~v~~wG~--n~~g~lg~~~~--~~~~~p~~v~~~~~~~i~~v~~G~~~~~~lt~~G 143 (425)
.+.+|++|+||..|+++|+++ |+||+||. |..||||.+.. .....|.++..+.+.+|++|+||..|+++|+++|
T Consensus 145 ~~~~~i~~va~G~~hs~alt~~-G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G 223 (473)
T 3of7_A 145 AEGHKVVQLAATDNMSCALFSN-GEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEG 223 (473)
T ss_dssp HTTCCEEEEEECSSEEEEEETT-SCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTS
T ss_pred cCCCcEEEEEccCCEEEEEeCC-CeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCC
Confidence 357899999999999999999 99999998 68899998554 3556788888888888999999999999999999
Q ss_pred CEEEEeCCCCCccCCCCCCC----cccceeeeccCCceEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCC----
Q 014382 144 EVQSWGRNQNGQLGLGTTED----SLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRND---- 215 (425)
Q Consensus 144 ~vy~~G~n~~gqlg~~~~~~----~~~p~~~~~~~~~~i~~i~~G~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~---- 215 (425)
+||+||.|.+||||.+.... ...|.++.. .+|++|+||.+|+++|+++|+||+||.|.+||||.+....
T Consensus 224 ~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~---~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~ 300 (473)
T 3of7_A 224 MVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGL---RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGAL 300 (473)
T ss_dssp CEEEEECCTTSTTSSCCCGGGTTTTCSCEECSC---CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCE
T ss_pred eEEEEeCCCCCCCCCCccccccccccCceecCC---cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCce
Confidence 99999999999999986543 345555532 5799999999999999999999999999999999987642
Q ss_pred CcceeeeeeeecCCCeEEEEEecCceEEEEecCCCEEEecCCCCCcCCCCCCC--------------CcccceeeccccC
Q 014382 216 RLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFK--------------DHLVPCQLEALRE 281 (425)
Q Consensus 216 ~~~p~~v~~~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~--------------~~~~p~~v~~~~~ 281 (425)
...|.++..+ .+.+|++|+||.+|+++|+++|+||+||.|.+||||.+... ....|.++..+.
T Consensus 301 ~~~P~~v~~~--~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~- 377 (473)
T 3of7_A 301 VTKPKRLALP--DNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP- 377 (473)
T ss_dssp EEEEEECCCC--TTCCEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSC-
T ss_pred eecccccccc--CCccEEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCC-
Confidence 3456666543 36789999999999999999999999999999999986421 223566665443
Q ss_pred CcEEEEecCCceEEEEeCCCcEEEeeeCCCCCcccCC-CCCcccceEeec--CCCCcEEEEEcCCCeeEEEeC
Q 014382 282 SFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGD-NVDHCSPVQVKF--PLDQKVVQISCGWRHTLAVTE 351 (425)
Q Consensus 282 ~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqLG~~~-~~~~~~p~~i~~--~~~~~i~~i~~G~~~~~~l~~ 351 (425)
+|++|+||.+|+++|+++|+||+||.|.+||||.++ ......|++|+. +...+|++|+||..|++++..
T Consensus 378 -~v~~Ia~G~~hs~al~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~~~~~v~~v~cG~~~s~~~~~ 449 (473)
T 3of7_A 378 -KFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFSVSGGV 449 (473)
T ss_dssp -CEEEEEECSSEEEEEETTSCEEEEECCTTCTTCCCSCCSCEEEEEECCCTTTTTEEEEEEEECSSEEEEEEE
T ss_pred -ceEEEEeCCCeEEEEeCCCcEEEeeCCCCCCCCCCCCCccccCCeEecccccCCCeEEEEeeCCCeEEEEEe
Confidence 599999999999999999999999999999999998 777888999974 345689999999999999965
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=9.3e-53 Score=390.68 Aligned_cols=260 Identities=26% Similarity=0.419 Sum_probs=218.6
Q ss_pred cCCCCCCCCeEEEeccCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcCCCeEEEEEcCCC
Q 014382 12 STTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCM 91 (425)
Q Consensus 12 ~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~~g 91 (425)
+.+.....+|++|+||..|+++|+ ||+||+||.|.+||||. |.. . ..+|++|+||..|+++|+ + |
T Consensus 17 ~~p~~~~~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~--------p~~--~--~~~i~~ia~G~~hs~~l~-~-G 81 (282)
T 3qhy_B 17 TVPAEAQSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTM--------PAA--T--QSGVDAIAAGNYHSLALK-D-G 81 (282)
T ss_dssp CCCGGGSSSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSC--------CGG--G--GSCCCEEEECSSEEEEEE-T-T
T ss_pred cCCccccCCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCC--------Ccc--C--CCCEEEEEeCCCEEEEEE-C-C
Confidence 445556679999999999999998 99999999999999994 221 1 236999999999999995 8 9
Q ss_pred EEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeCCCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeee
Q 014382 92 QVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQ 171 (425)
Q Consensus 92 ~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~ 171 (425)
+||+||.|.+||||. |.++ ..+|++|+||..|+++|+ +|+||+||.|.++||+...
T Consensus 82 ~v~~wG~n~~Gqlg~--------P~~~----~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~----------- 137 (282)
T 3qhy_B 82 EVIAWGGNEDGQTTV--------PAEA----RSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPA----------- 137 (282)
T ss_dssp EEEEEECCTTSTTCC--------CGGG----SSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCG-----------
T ss_pred EEEEeeCCCCCCCCC--------Cccc----CCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCc-----------
Confidence 999999999999985 3332 238999999999999999 9999999999999997421
Q ss_pred ccCCceEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEecCceEEEEecCCCE
Q 014382 172 AFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRL 251 (425)
Q Consensus 172 ~~~~~~i~~i~~G~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~g~~~~~~lt~~G~v 251 (425)
....+|++|+||..|+++|+ +|+||+||.|.+|||+. |.++ ..+|++|+||.+|+++| ++|+|
T Consensus 138 -~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~--------p~~~------~~~v~~i~~G~~hs~al-~~G~v 200 (282)
T 3qhy_B 138 -EAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTV--------PAEA------QSGVDDVAGGIFHSLAL-KDGKV 200 (282)
T ss_dssp -GGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSC--------CGGG------GSSEEEEEECSSEEEEE-ETTEE
T ss_pred -cCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCC--------ceec------CCCeEEEEecCCEEEEE-ECCeE
Confidence 11246999999999999999 89999999999999983 2222 35899999999999999 89999
Q ss_pred EEecCCCCCcCCCCCCCCcccceeeccccCCcEEEEecCCceEEEEeCCCcEEEeeeCCCCCcccCCCCCcccceEeecC
Q 014382 252 YSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFP 331 (425)
Q Consensus 252 y~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqLG~~~~~~~~~p~~i~~~ 331 (425)
|+||.|.++|||.+. +.+ .+|++|+||.+|+++|+ +|+||+||.|.++|++..
T Consensus 201 ~~wG~n~~gqlg~p~----------~~~--~~v~~i~~G~~h~~al~-~g~v~~wG~n~~gq~~v~-------------- 253 (282)
T 3qhy_B 201 IAWGDNRYKQTTVPT----------EAL--SGVSAIASGEWYSLALK-NGKVIAWGSSRTAPSSVQ-------------- 253 (282)
T ss_dssp EEEECCTTSTTCCCG----------GGG--SSCCEEEECSSCEEEEE-TTEEEEESTTCCCCGGGS--------------
T ss_pred EEEECCCCCCCCCCc----------ccC--CCceEEEcCCCEEEEEE-CCEEEEecCCCCccccCC--------------
Confidence 999999999998532 112 34999999999999999 999999999999998641
Q ss_pred CCCcEEEEEcCCCeeEEEeCCCCEE
Q 014382 332 LDQKVVQISCGWRHTLAVTERQNVF 356 (425)
Q Consensus 332 ~~~~i~~i~~G~~~~~~l~~~g~vy 356 (425)
..|++|+||..|+++|+++++.+
T Consensus 254 --~~v~~iaaG~~h~~al~~~~~~~ 276 (282)
T 3qhy_B 254 --SGVSSIEAGPNAAYALKGGSGSG 276 (282)
T ss_dssp --SCEEEEEECSSCEEEEEC-----
T ss_pred --CCcEEEEECcCeEEEEecCCCCC
Confidence 37999999999999999987654
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=9.7e-52 Score=383.82 Aligned_cols=251 Identities=27% Similarity=0.452 Sum_probs=210.9
Q ss_pred CeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcCCCeEEEEEcCCCEEEEEeCCCCCCCCCCCCCCccccee
Q 014382 38 NIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLP 117 (425)
Q Consensus 38 g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~ 117 (425)
.+||+||.|...++. |.+++.+. +|++|+||..|+++|+ + |+||+||.|.+||||.. .
T Consensus 2 ~~v~~WG~n~~~~~~---------~~p~~~~~--~i~~ia~G~~h~~~l~-~-G~v~~wG~n~~Gqlg~p--------~- 59 (282)
T 3qhy_B 2 TSVVAWGGNNDWGEA---------TVPAEAQS--GVDAIAGGYFHGLALK-G-GKVLGWGANLNGQLTMP--------A- 59 (282)
T ss_dssp CEEEEECSCCTTSTT---------CCCGGGSS--SCCEEEECSSEEEEEE-T-TEEEEEECCSSSTTSCC--------G-
T ss_pred eEEEEeCCCCCcCcc---------cCCccccC--CCcEEEeCCCeEEEEE-C-CEEEEEeCCCCCCCCCC--------c-
Confidence 369999998655442 22233333 6999999999999998 8 99999999999999942 1
Q ss_pred ecccCCCCEEEEEeCCCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeeccCCceEEEEEeCCCeEEEEecCCcE
Q 014382 118 IKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGEL 197 (425)
Q Consensus 118 v~~~~~~~i~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~L~~~g~v 197 (425)
.. ..+|++|+||..|+++|+ +|+||+||.|.+||||. |.++ ..+|++|+||.+|+++|+ +|+|
T Consensus 60 -~~--~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~--------P~~~----~~~v~~ia~G~~hs~al~-~G~v 122 (282)
T 3qhy_B 60 -AT--QSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV--------PAEA----RSGVDAIAAGAWASYALK-DGKV 122 (282)
T ss_dssp -GG--GSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC--------CGGG----SSSEEEEEEETTEEEEEE-TTEE
T ss_pred -cC--CCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC--------Cccc----CCCeEEEECcCCEEEEEe-CCeE
Confidence 11 237999999999999996 99999999999999985 3333 237999999999999999 9999
Q ss_pred EEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEecCceEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeec
Q 014382 198 YGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLE 277 (425)
Q Consensus 198 y~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~ 277 (425)
|+||.|.+|||+.. .+ ...+|++|+||.+|+++|+ +|+||+||.|.++||+. |.++
T Consensus 123 ~~wG~n~~gqlg~~--------~~------~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~--------p~~~- 178 (282)
T 3qhy_B 123 IAWGDDSDGQTTVP--------AE------AQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTV--------PAEA- 178 (282)
T ss_dssp EEEECCTTSTTSCC--------GG------GGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSC--------CGGG-
T ss_pred EEecCCCCCcCCCC--------cc------CCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCC--------ceec-
Confidence 99999999999842 11 1347999999999999999 89999999999999983 2222
Q ss_pred cccCCcEEEEecCCceEEEEeCCCcEEEeeeCCCCCcccCCCCCcccceEeecCCCCcEEEEEcCCCeeEEEeCCCCEEE
Q 014382 278 ALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFS 357 (425)
Q Consensus 278 ~~~~~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~l~~~g~vy~ 357 (425)
..+|++|+||.+|+++| ++|+||+||.|.+||||.+. +...+|++|+||.+|+++|+ +|+||+
T Consensus 179 ---~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~------------~~~~~v~~i~~G~~h~~al~-~g~v~~ 241 (282)
T 3qhy_B 179 ---QSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPT------------EALSGVSAIASGEWYSLALK-NGKVIA 241 (282)
T ss_dssp ---GSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCG------------GGGSSCCEEEECSSCEEEEE-TTEEEE
T ss_pred ---CCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCc------------ccCCCceEEEcCCCEEEEEE-CCEEEE
Confidence 34599999999999999 89999999999999998532 11257999999999999999 999999
Q ss_pred eeCCCCCccCC
Q 014382 358 WGRGTNGQLGH 368 (425)
Q Consensus 358 wG~n~~gqLG~ 368 (425)
||.|.+||++.
T Consensus 242 wG~n~~gq~~v 252 (282)
T 3qhy_B 242 WGSSRTAPSSV 252 (282)
T ss_dssp ESTTCCCCGGG
T ss_pred ecCCCCccccC
Confidence 99999999975
No 13
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.83 E-value=0.025 Score=54.41 Aligned_cols=282 Identities=12% Similarity=0.117 Sum_probs=161.6
Q ss_pred CCCeEEEeccCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcCCCeEEEEEcCCCEEEEEe
Q 014382 18 FRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWG 97 (425)
Q Consensus 18 ~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~~g~v~~wG 97 (425)
...|..++..+...+.-..||.|.+|-.... + ....+... ...|..++......+.-..| |.|..|-
T Consensus 133 ~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~-~----------~~~~~~~h-~~~v~~l~~~~~~l~sg~~d-g~i~vwd 199 (435)
T 1p22_A 133 SKGVYCLQYDDQKIVSGLRDNTIKIWDKNTL-E----------CKRILTGH-TGSVLCLQYDERVIITGSSD-STVRVWD 199 (435)
T ss_dssp CCCEEEEECCSSEEEEEESSSCEEEEESSSC-C----------EEEEECCC-SSCEEEEECCSSEEEEEETT-SCEEEEE
T ss_pred CCcEEEEEECCCEEEEEeCCCeEEEEeCCCC-e----------EEEEEcCC-CCcEEEEEECCCEEEEEcCC-CeEEEEE
Confidence 3457788887777777778999999964321 1 11112211 23688888866655666667 9999995
Q ss_pred CCCCCCCCCCCCCCcccceeecccCCCCEEEEEeCCCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeeccCCce
Q 014382 98 WGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVS 177 (425)
Q Consensus 98 ~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~ 177 (425)
....- ....+. .....|..++......+.-+.+|.|..|-...... .............
T Consensus 200 ~~~~~-----------~~~~~~-~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~---------~~~~~~~~~~~~~ 258 (435)
T 1p22_A 200 VNTGE-----------MLNTLI-HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD---------ITLRRVLVGHRAA 258 (435)
T ss_dssp SSSCC-----------EEEEEC-CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSC---------CEEEEEECCCSSC
T ss_pred CCCCc-----------EEEEEc-CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCC---------ceeeeEecCCCCc
Confidence 43211 001111 12346888888888888889999999996533211 0111111112345
Q ss_pred EEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEecCceEEEEecCCCEEEecCC
Q 014382 178 IKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWS 257 (425)
Q Consensus 178 i~~i~~G~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n 257 (425)
|..++......+.-..+|.|..|-.... ..+..+......|..++......+.-..||.|..|-..
T Consensus 259 v~~~~~~~~~l~s~~~dg~i~vwd~~~~--------------~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~ 324 (435)
T 1p22_A 259 VNVVDFDDKYIVSASGDRTIKVWNTSTC--------------EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIE 324 (435)
T ss_dssp EEEEEEETTEEEEEETTSEEEEEETTTC--------------CEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred EEEEEeCCCEEEEEeCCCeEEEEECCcC--------------cEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECC
Confidence 7777776777777788999999964221 12222232345677777777777777889999999643
Q ss_pred CCCcCCCCCCCCcccceeeccccCCcEEEEecCCceEEEEeCCCcEEEeeeCCCCCcccCCCCCcccceEeecCCCCcEE
Q 014382 258 KYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVV 337 (425)
Q Consensus 258 ~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~ 337 (425)
... ....+. .....|..++....+.+.-..+|.|.+|-........ ......+..........|.
T Consensus 325 ~~~-----------~~~~~~-~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~---~~~~~~~~~~~~~h~~~v~ 389 (435)
T 1p22_A 325 CGA-----------CLRVLE-GHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPR---APAGTLCLRTLVEHSGRVF 389 (435)
T ss_dssp TCC-----------EEEEEC-CCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTT---SCTTTTEEEEECCCSSCCC
T ss_pred CCC-----------EEEEEe-CCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCcc---ccccchheeeccCCCCCeE
Confidence 211 011111 1223477777766676777889999999643211100 0000011121122234566
Q ss_pred EEEcCCCeeEEEeCCCCEEEeeCCC
Q 014382 338 QISCGWRHTLAVTERQNVFSWGRGT 362 (425)
Q Consensus 338 ~i~~G~~~~~~l~~~g~vy~wG~n~ 362 (425)
.++......+.-..||.|..|-...
T Consensus 390 ~l~~~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 390 RLQFDEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp CEEECSSCEEECCSSSEEEEEC---
T ss_pred EEEeCCCEEEEEeCCCEEEEEECCC
Confidence 6666555555555789999997644
No 14
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.49 E-value=0.08 Score=50.92 Aligned_cols=268 Identities=11% Similarity=0.044 Sum_probs=156.5
Q ss_pred eEEEeccCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcCCCeEEEEEcCCCEEEEEeCCC
Q 014382 21 VLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGD 100 (425)
Q Consensus 21 i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~~g~v~~wG~n~ 100 (425)
+..++..+...+.-..||.|.+|-......+ ..+... ...|..++......+.-..| |.|..|-...
T Consensus 122 ~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~-----------~~~~~h-~~~v~~~~~~~~~l~s~~~d-g~i~vwd~~~ 188 (445)
T 2ovr_B 122 ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCL-----------RTLVGH-TGGVWSSQMRDNIIISGSTD-RTLKVWNAET 188 (445)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTCCEE-----------EECCCC-SSCEEEEEEETTEEEEEETT-SCEEEEETTT
T ss_pred EEEEEEcCCEEEEEECCCcEEEEECCCCcEE-----------EEEcCC-CCCEEEEEecCCEEEEEeCC-CeEEEEECCc
Confidence 4455555565666678888888875321111 111111 23577777666666666777 9999995322
Q ss_pred CCCCCCCCCCCcccceeecccCCCCEEEEEeCCCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeeccCCceEEE
Q 014382 101 FGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKM 180 (425)
Q Consensus 101 ~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~ 180 (425)
. .+..........|..+.......+.-+.+|.|+.|-...... ...+. .....|..
T Consensus 189 ~------------~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-----------~~~~~-~~~~~v~~ 244 (445)
T 2ovr_B 189 G------------ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC-----------LHVLM-GHVAAVRC 244 (445)
T ss_dssp T------------EEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCE-----------EEEEE-CCSSCEEE
T ss_pred C------------cEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcE-----------EEEEc-CCcccEEE
Confidence 1 111111112346788888788888888999999996543110 01111 12335667
Q ss_pred EEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEecCceEEEEecCCCEEEecCCCCC
Q 014382 181 VAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYG 260 (425)
Q Consensus 181 i~~G~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~g 260 (425)
++......+.-..+|.|+.|-... ...+..+......|..++....+.+.-..||.|..|-.....
T Consensus 245 ~~~~~~~l~~~~~dg~i~iwd~~~--------------~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 310 (445)
T 2ovr_B 245 VQYDGRRVVSGAYDFMVKVWDPET--------------ETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGN 310 (445)
T ss_dssp EEECSSCEEEEETTSCEEEEEGGG--------------TEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCC
T ss_pred EEECCCEEEEEcCCCEEEEEECCC--------------CcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCC
Confidence 766666777778899999995321 122223332345677777777777777889999998643211
Q ss_pred cCCCCCCCCcccceeeccccCCcEEEEecCCceEEEEeCCCcEEEeeeCCCCCcccCCCCCcccceEeec--CCCCcEEE
Q 014382 261 QLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKF--PLDQKVVQ 338 (425)
Q Consensus 261 qlg~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqLG~~~~~~~~~p~~i~~--~~~~~i~~ 338 (425)
. ...+. .....+..++...+..+.-..+|.|..|-...... ...+.. .....|..
T Consensus 311 ~-----------~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-----------~~~~~~~~~~~~~v~~ 367 (445)
T 2ovr_B 311 C-----------IHTLT-GHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQC-----------LQTLQGPNKHQSAVTC 367 (445)
T ss_dssp E-----------EEEEC-CCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCE-----------EEEECSTTSCSSCEEE
T ss_pred E-----------EEEEc-CCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcE-----------EEEEccCCCCCCCEEE
Confidence 1 01111 11233666666666667778899999996432111 111111 12356777
Q ss_pred EEcCCCeeEEEeCCCCEEEeeCCC
Q 014382 339 ISCGWRHTLAVTERQNVFSWGRGT 362 (425)
Q Consensus 339 i~~G~~~~~~l~~~g~vy~wG~n~ 362 (425)
++......+.-..||.|..|-...
T Consensus 368 ~~~~~~~l~s~~~dg~v~iwd~~~ 391 (445)
T 2ovr_B 368 LQFNKNFVITSSDDGTVKLWDLKT 391 (445)
T ss_dssp EEECSSEEEEEETTSEEEEEETTT
T ss_pred EEECCCEEEEEeCCCeEEEEECCC
Confidence 777766766777899999997543
No 15
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.89 E-value=0.28 Score=50.53 Aligned_cols=150 Identities=15% Similarity=0.065 Sum_probs=71.7
Q ss_pred CCeEEEEEc-CCCEEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEE----eCCCEEEEEEcCCCEEEEeCCCCC
Q 014382 80 ADHTTAYSE-SCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIA----CGDSHCLAVTVEGEVQSWGRNQNG 154 (425)
Q Consensus 80 ~~~~~~lt~-~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~----~G~~~~~~lt~~G~vy~~G~n~~g 154 (425)
..|++++.. + ++||++|-.....- ...+... -.+.......+. .-..|++++..+|+||++|-....
T Consensus 441 ~~hs~~~~~~~-~~lyv~GG~~~~~~---~~~dv~~----yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~ 512 (695)
T 2zwa_A 441 MCHTFTTISRN-NQLLLIGGRKAPHQ---GLSDNWI----FDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEG 512 (695)
T ss_dssp BSCEEEEETTT-TEEEEECCBSSTTC---BCCCCEE----EETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSS
T ss_pred cceEEEEEccC-CEEEEEcCCCCCCC---ccccEEE----EeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCC
Confidence 457777775 6 89999994322110 0011111 001111122221 224677776569999999853321
Q ss_pred ccCCCCCCCcccceeeeccCCceEEEEEe-------CCCeE-EEEecC-CcEEEeeCCCCCCCCCCCCCCCcceeeeeee
Q 014382 155 QLGLGTTEDSLVPQKLQAFEGVSIKMVAA-------GAEHS-VAVAED-GELYGWGWGRYGNLGLGDRNDRLIPEKVATV 225 (425)
Q Consensus 155 qlg~~~~~~~~~p~~~~~~~~~~i~~i~~-------G~~~~-~~L~~~-g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~ 225 (425)
. ...+-.+.......+.. -..|+ +++..+ +++|++|-.... + ......+..+
T Consensus 513 ~-----------~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~----~----~~~~~~v~~y 573 (695)
T 2zwa_A 513 P-----------AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMD----Q----TTVSDKAIIF 573 (695)
T ss_dssp C-----------SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTT----S----SCBCCEEEEE
T ss_pred C-----------CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCC----C----CeeeCcEEEE
Confidence 1 11111122233444432 23556 555655 899999832211 0 0001122222
Q ss_pred ecCCCe------EEEEE-----ecCceEEEEecCCCEEEecC
Q 014382 226 DLQREK------MVMVA-----CGWRHTISVSSSGRLYSYGW 256 (425)
Q Consensus 226 ~~~~~~------i~~i~-----~g~~~~~~lt~~G~vy~~G~ 256 (425)
++.... ...+. .-..|++++..+++||.+|-
T Consensus 574 d~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG 615 (695)
T 2zwa_A 574 KYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGG 615 (695)
T ss_dssp EECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECC
T ss_pred EccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECC
Confidence 222222 33332 23567888777799999985
No 16
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.72 E-value=0.33 Score=50.03 Aligned_cols=104 Identities=13% Similarity=0.089 Sum_probs=54.1
Q ss_pred CCEEEEEEc-CCCEEEEeCCCCCccCCCCCCCcccceeeeccCCceEEEEE----eCCCeEEEEecCCcEEEeeCCCCCC
Q 014382 133 DSHCLAVTV-EGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVA----AGAEHSVAVAEDGELYGWGWGRYGN 207 (425)
Q Consensus 133 ~~~~~~lt~-~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~----~G~~~~~~L~~~g~vy~~G~n~~gq 207 (425)
..|++++.. +|+||++|-.....--..+ ..+-.+.......+. .-..|++++..+++||++|-...
T Consensus 441 ~~hs~~~~~~~~~lyv~GG~~~~~~~~~d-------v~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~-- 511 (695)
T 2zwa_A 441 MCHTFTTISRNNQLLLIGGRKAPHQGLSD-------NWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTE-- 511 (695)
T ss_dssp BSCEEEEETTTTEEEEECCBSSTTCBCCC-------CEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCS--
T ss_pred cceEEEEEccCCEEEEEcCCCCCCCcccc-------EEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCC--
Confidence 368877776 8999999853321100000 001111111222221 23467777756899999983221
Q ss_pred CCCCCCCCCcceeeeeeeecCCCeEEEEEe-------cCceE-EEEecC-CCEEEecC
Q 014382 208 LGLGDRNDRLIPEKVATVDLQREKMVMVAC-------GWRHT-ISVSSS-GRLYSYGW 256 (425)
Q Consensus 208 lg~~~~~~~~~p~~v~~~~~~~~~i~~i~~-------g~~~~-~~lt~~-G~vy~~G~ 256 (425)
.. .+...+........+.. -..|+ +++..+ +++|.+|-
T Consensus 512 -----~~------~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG 558 (695)
T 2zwa_A 512 -----GP------AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGG 558 (695)
T ss_dssp -----SC------SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECC
T ss_pred -----CC------CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECC
Confidence 11 23333333445555542 34566 455655 89999994
No 17
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.58 E-value=0.55 Score=44.82 Aligned_cols=229 Identities=11% Similarity=0.062 Sum_probs=138.4
Q ss_pred cEEEEEcCCCeEEEEEcCCCEEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeCCCEEEEEEcCCCEEEEeCC
Q 014382 72 EIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRN 151 (425)
Q Consensus 72 ~i~~i~~G~~~~~~lt~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~~lt~~G~vy~~G~n 151 (425)
.|..++......+.-..| |.|..|-.... ............|..++......+.-+.||.|..|-..
T Consensus 135 ~v~~~~~d~~~l~~g~~d-g~i~iwd~~~~------------~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 135 GVYCLQYDDQKIVSGLRD-NTIKIWDKNTL------------ECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp CEEEEECCSSEEEEEESS-SCEEEEESSSC------------CEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESS
T ss_pred cEEEEEECCCEEEEEeCC-CeEEEEeCCCC------------eEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECC
Confidence 577777767777777777 99999953221 11111111234688888877777777889999999654
Q ss_pred CCCccCCCCCCCcccceeeeccCCceEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCe
Q 014382 152 QNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREK 231 (425)
Q Consensus 152 ~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~ 231 (425)
.... ...+. .....|..++......+.-..+|.|..|-..... .......+......
T Consensus 202 ~~~~-----------~~~~~-~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~-----------~~~~~~~~~~~~~~ 258 (435)
T 1p22_A 202 TGEM-----------LNTLI-HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPT-----------DITLRRVLVGHRAA 258 (435)
T ss_dssp SCCE-----------EEEEC-CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSS-----------CCEEEEEECCCSSC
T ss_pred CCcE-----------EEEEc-CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCC-----------CceeeeEecCCCCc
Confidence 3210 01111 1234677787777777888889999999643211 01111112222456
Q ss_pred EEEEEecCceEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcEEEEecCCceEEEEeCCCcEEEeeeCCC
Q 014382 232 MVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKF 311 (425)
Q Consensus 232 i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~ 311 (425)
|..++....+.+.-..||.|..|-..... ....+. .....|..++......+.-..+|.|..|-....
T Consensus 259 v~~~~~~~~~l~s~~~dg~i~vwd~~~~~-----------~~~~~~-~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~ 326 (435)
T 1p22_A 259 VNVVDFDDKYIVSASGDRTIKVWNTSTCE-----------FVRTLN-GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECG 326 (435)
T ss_dssp EEEEEEETTEEEEEETTSEEEEEETTTCC-----------EEEEEE-CCSSCEEEEEEETTEEEEEETTSCEEEEETTTC
T ss_pred EEEEEeCCCEEEEEeCCCeEEEEECCcCc-----------EEEEEc-CCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCC
Confidence 77777777777778889999998643211 011111 112336667666667777788999999965431
Q ss_pred CCcccCCCCCcccceEeecCCCCcEEEEEcCCCeeEEEeCCCCEEEeeC
Q 014382 312 GQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGR 360 (425)
Q Consensus 312 gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~l~~~g~vy~wG~ 360 (425)
.+...-......|..++......+.-..||.|..|-.
T Consensus 327 ------------~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 327 ------------ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp ------------CEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEH
T ss_pred ------------CEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEEC
Confidence 1111111233567778776666666678999999954
No 18
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.34 E-value=0.0055 Score=53.23 Aligned_cols=85 Identities=21% Similarity=0.354 Sum_probs=63.6
Q ss_pred CCeEEEeccCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcCCCeEEEEEcCCCEEEEEeC
Q 014382 19 RPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGW 98 (425)
Q Consensus 19 ~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~~g~v~~wG~ 98 (425)
.+|..|+--..|..++-.|++++.||++++||+-..... .+..++.+|.++++-+..- ..+-.||+
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~ta-------------gPfla~~AG~~fTVTVn~~-nyv~FWGD 374 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDHA-------------GPYIQLAAGHNFTVTVNTL-NQVMFWGD 374 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGGG-------------CCEEEEEECSSEEEEEETT-CCEEEEEC
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCCCc-------------chHHhHhccCCeEEEEece-eeEEEecC
Confidence 456677777889999999999999999999998542211 2588999999999999999 99999997
Q ss_pred CCCCCC---CCCCCCCccccee
Q 014382 99 GDFGRL---GHGNSSDLFTPLP 117 (425)
Q Consensus 99 n~~g~l---g~~~~~~~~~p~~ 117 (425)
.....| |+++.-...+|+|
T Consensus 375 SPDNSLLwnGr~t~~~~~~~~~ 396 (400)
T 4gbf_A 375 SPDNSLLWNGRGTRVKHIEPTP 396 (400)
T ss_dssp CTTSTTCCTTCCSBCCCCCCCC
T ss_pred CCCcceeecCccceeeeccCCC
Confidence 655443 4544444444444
No 19
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.26 E-value=0.86 Score=43.53 Aligned_cols=231 Identities=10% Similarity=0.060 Sum_probs=137.7
Q ss_pred CCCCeEEEeccCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcCCCeEEEEEcCCCEEEEE
Q 014382 17 PFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSW 96 (425)
Q Consensus 17 ~~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~~g~v~~w 96 (425)
....|..++..+...+.-..||.|.+|-.... + ....+.. ....|..++......+....| |.|..|
T Consensus 158 h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~-~----------~~~~~~~-h~~~v~~~~~~~~~l~s~s~d-g~i~~w 224 (445)
T 2ovr_B 158 HTGGVWSSQMRDNIIISGSTDRTLKVWNAETG-E----------CIHTLYG-HTSTVRCMHLHEKRVVSGSRD-ATLRVW 224 (445)
T ss_dssp CSSCEEEEEEETTEEEEEETTSCEEEEETTTT-E----------EEEEECC-CSSCEEEEEEETTEEEEEETT-SEEEEE
T ss_pred CCCCEEEEEecCCEEEEEeCCCeEEEEECCcC-c----------EEEEECC-CCCcEEEEEecCCEEEEEeCC-CEEEEE
Confidence 34567777776666666678899999964321 1 1111111 123577777777777777777 999999
Q ss_pred eCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeCCCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeeccCCc
Q 014382 97 GWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGV 176 (425)
Q Consensus 97 G~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~ 176 (425)
-.... .+..........|..++......+.-+.+|.|..|-..... ....+. ....
T Consensus 225 d~~~~------------~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~-~~~~ 280 (445)
T 2ovr_B 225 DIETG------------QCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETET-----------CLHTLQ-GHTN 280 (445)
T ss_dssp ESSSC------------CEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTE-----------EEEEEC-CCSS
T ss_pred ECCCC------------cEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCc-----------EeEEec-CCCC
Confidence 53321 11111111234677777777778888889999999643210 001111 1223
Q ss_pred eEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEecCceEEEEecCCCEEEecC
Q 014382 177 SIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGW 256 (425)
Q Consensus 177 ~i~~i~~G~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~ 256 (425)
.|..++....+.+.-..+|.|..|-.... ..+..+......+..+....+..+.-..||.|..|-.
T Consensus 281 ~v~~~~~~~~~l~~~~~d~~i~i~d~~~~--------------~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~ 346 (445)
T 2ovr_B 281 RVYSLQFDGIHVVSGSLDTSIRVWDVETG--------------NCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDI 346 (445)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEETTTC--------------CEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEET
T ss_pred ceEEEEECCCEEEEEeCCCeEEEEECCCC--------------CEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEEC
Confidence 57777776677777788999999964321 1122222223456667666777777788999999964
Q ss_pred CCCCcCCCCCCCCcccceeecc--ccCCcEEEEecCCceEEEEeCCCcEEEeeeC
Q 014382 257 SKYGQLGHGDFKDHLVPCQLEA--LRESFISQISGGWRHTMAVTSDGKLYGWGWN 309 (425)
Q Consensus 257 n~~gqlg~~~~~~~~~p~~v~~--~~~~~i~~i~~G~~~~~~lt~~g~v~~wG~n 309 (425)
.... ....+.. .....|..++....+.+.-..+|.|..|-..
T Consensus 347 ~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 347 KTGQ-----------CLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp TTCC-----------EEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETT
T ss_pred CCCc-----------EEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECC
Confidence 3211 1111111 1223477777767777777889999999654
No 20
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.16 E-value=1.4 Score=44.93 Aligned_cols=72 Identities=18% Similarity=0.177 Sum_probs=38.0
Q ss_pred CceEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcEEEEe----cCCceE-EEEeCCCcEEEeeeCCCC
Q 014382 239 WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQIS----GGWRHT-MAVTSDGKLYGWGWNKFG 312 (425)
Q Consensus 239 ~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~----~G~~~~-~~lt~~g~v~~wG~n~~g 312 (425)
..|++++..+|+||.+|-...++. .........+. +-.+...+...+. .-..|+ +++..+|+||+.|.+.++
T Consensus 457 ~~~~~~~l~~g~i~v~GG~~~~~~-~~~~~~~~~v~-~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~ 533 (656)
T 1k3i_A 457 TFHTSVVLPDGSTFITGGQRRGIP-FEDSTPVFTPE-IYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCG 533 (656)
T ss_dssp BSCEEEECTTSCEEEECCBSBCCT-TCCCSBCCCCE-EEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCT
T ss_pred ccCCeEECCCCCEEEECCcccCcC-cCCCCcccceE-EEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCCCCC
Confidence 357777778999999996443321 11111111111 1111112233222 224565 456689999999987654
No 21
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.01 E-value=0.018 Score=50.01 Aligned_cols=72 Identities=28% Similarity=0.471 Sum_probs=59.6
Q ss_pred CcEEEEecCCceEEEEeCCCcEEEeeeCCCCCcccCCCCCcccceEeecCCCCcEEEEEcCCCeeEEEeCCCCEEEeeCC
Q 014382 282 SFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRG 361 (425)
Q Consensus 282 ~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~l~~~g~vy~wG~n 361 (425)
..|..|+.-+.|+.++--+++++.||++..||+-.... ..+..++.+|.+.++-+..-+.+--||+.
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~t-------------agPfla~~AG~~fTVTVn~~nyv~FWGDS 375 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDH-------------AGPYIQLAAGHNFTVTVNTLNQVMFWGDS 375 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGG-------------GCCEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCCC-------------cchHHhHhccCCeEEEEeceeeEEEecCC
Confidence 44888999999999999999999999999999854221 24678999999999999999999999987
Q ss_pred CCCcc
Q 014382 362 TNGQL 366 (425)
Q Consensus 362 ~~gqL 366 (425)
....|
T Consensus 376 PDNSL 380 (400)
T 4gbf_A 376 PDNSL 380 (400)
T ss_dssp TTSTT
T ss_pred CCcce
Confidence 65544
No 22
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=94.95 E-value=2.4 Score=39.68 Aligned_cols=267 Identities=12% Similarity=0.054 Sum_probs=135.3
Q ss_pred EeccCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcCC--CeEEEEEcCCCEEEEEeCCCC
Q 014382 24 ISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGA--DHTTAYSESCMQVYSWGWGDF 101 (425)
Q Consensus 24 i~~g~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~~~~~lt~~~g~v~~wG~n~~ 101 (425)
++......++...||.|++|-.... + ....+.......|..++... ...++-..+ |.|..|-....
T Consensus 99 ~~~s~~~l~~~~~d~~v~lw~~~~~-~----------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-g~i~iwd~~~~ 166 (401)
T 4aez_A 99 LDWSNLNVVAVALERNVYVWNADSG-S----------VSALAETDESTYVASVKWSHDGSFLSVGLGN-GLVDIYDVESQ 166 (401)
T ss_dssp EEECTTSEEEEEETTEEEEEETTTC-C----------EEEEEECCTTCCEEEEEECTTSSEEEEEETT-SCEEEEETTTC
T ss_pred EeecCCCEEEEECCCeEEEeeCCCC-c----------EeEeeecCCCCCEEEEEECCCCCEEEEECCC-CeEEEEECcCC
Confidence 5555677888889999999976431 1 11112221234577766543 344444556 99999953321
Q ss_pred CCCCCCCCCCcccceeecccCCCCEEEEEeCCCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeeccCCceEEEE
Q 014382 102 GRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMV 181 (425)
Q Consensus 102 g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i 181 (425)
. ....+. .....|..++......+.-+.+|.|+.|-...... ....+.. ....|..+
T Consensus 167 ~-----------~~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------~~~~~~~-~~~~v~~~ 223 (401)
T 4aez_A 167 T-----------KLRTMA-GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANH----------QIGTLQG-HSSEVCGL 223 (401)
T ss_dssp C-----------EEEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC----------EEEEEEC-CSSCEEEE
T ss_pred e-----------EEEEec-CCCCceEEEEECCCEEEEEcCCCCEEEEecccCcc----------eeeEEcC-CCCCeeEE
Confidence 1 111111 22346888888778888888899999996542111 0111111 22356666
Q ss_pred EeCC--CeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEecC--ceEEEEe---cCCCEEEe
Q 014382 182 AAGA--EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW--RHTISVS---SSGRLYSY 254 (425)
Q Consensus 182 ~~G~--~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~g~--~~~~~lt---~~G~vy~~ 254 (425)
+... ...+.-..+|.|+.|-.... ..+..+......|..++... .+.++.. .+|.|+.|
T Consensus 224 ~~~~~~~~l~s~~~d~~v~iwd~~~~--------------~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~ 289 (401)
T 4aez_A 224 AWRSDGLQLASGGNDNVVQIWDARSS--------------IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW 289 (401)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTCS--------------SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEE
T ss_pred EEcCCCCEEEEEeCCCeEEEccCCCC--------------CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEE
Confidence 5543 34555567899999964321 11111111233455554433 2333332 47888888
Q ss_pred cCCCCCcCCCCCCCCcccceeeccccCCcEEEEecCCc--eEEEEe--CCCcEEEeeeCCCCCcccCCCCCcccceEeec
Q 014382 255 GWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWR--HTMAVT--SDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKF 330 (425)
Q Consensus 255 G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G~~--~~~~lt--~~g~v~~wG~n~~gqLG~~~~~~~~~p~~i~~ 330 (425)
-..... ....+. ....|..++...+ ..++.. .+|.|++|-...... .....+.
T Consensus 290 d~~~~~-----------~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~---------~~~~~~~- 346 (401)
T 4aez_A 290 NAATGA-----------RVNTVD--AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGL---------TKQVDIP- 346 (401)
T ss_dssp ETTTCC-----------EEEEEE--CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEE---------EEEEEEE-
T ss_pred ECCCCC-----------EEEEEe--CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccc---------eeEEEec-
Confidence 542211 011111 1233666554333 223322 688899886543100 0001111
Q ss_pred CCCCcEEEEEcCC--CeeEEEeCCCCEEEeeCCC
Q 014382 331 PLDQKVVQISCGW--RHTLAVTERQNVFSWGRGT 362 (425)
Q Consensus 331 ~~~~~i~~i~~G~--~~~~~l~~~g~vy~wG~n~ 362 (425)
.....|..++... ...+.-..||.|..|=...
T Consensus 347 ~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 347 AHDTRVLYSALSPDGRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp CCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred CCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 1223455554443 3344445788999996543
No 23
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=94.74 E-value=3 Score=39.74 Aligned_cols=279 Identities=10% Similarity=0.087 Sum_probs=145.9
Q ss_pred eEEEeccCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcCCC-eEEEEEcCCCEEEEEeCC
Q 014382 21 VLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD-HTTAYSESCMQVYSWGWG 99 (425)
Q Consensus 21 i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~-~~~~lt~~~g~v~~wG~n 99 (425)
+..++..+...+.-..||.|.+|-.... + ....+... ...|..++.... ..+.-..| |.|..|--.
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~~-~----------~~~~~~~h-~~~V~~l~~~~~~~l~s~s~d-g~i~vwd~~ 191 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSINK-K----------FLLQLSGH-DGGVWALKYAHGGILVSGSTD-RTVRVWDIK 191 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTT-E----------EEEEECCC-SSCEEEEEECSTTEEEEEETT-SCEEEEETT
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECCCC-c----------EEEEEeCC-CcCEEEEEEcCCCEEEEEeCC-CCEEEEECC
Confidence 4455665666666678899999964321 1 11111111 235777776544 44444556 999999533
Q ss_pred CCCCCCCCCCCCcccceeecccCCCCEEEEEeC----CCEEEEEEcCCCEEEEeCCCCCccCCCCCCC---------ccc
Q 014382 100 DFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG----DSHCLAVTVEGEVQSWGRNQNGQLGLGTTED---------SLV 166 (425)
Q Consensus 100 ~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G----~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~---------~~~ 166 (425)
... ....+. .....|..+... ..+.+.-+.+|.|..|-.............. ...
T Consensus 192 ~~~-----------~~~~~~-~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (464)
T 3v7d_B 192 KGC-----------CTHVFE-GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEEN 259 (464)
T ss_dssp TTE-----------EEEEEC-CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGC
T ss_pred CCc-----------EEEEEC-CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCC
Confidence 210 111111 123356555543 2556667789999999765432221100000 000
Q ss_pred ceeee--ccCCceEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEecC--ceE
Q 014382 167 PQKLQ--AFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW--RHT 242 (425)
Q Consensus 167 p~~~~--~~~~~~i~~i~~G~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~g~--~~~ 242 (425)
+..+. ......+..++......+.-..+|.|..|-... ...+..+......|..++... ...
T Consensus 260 ~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~l 325 (464)
T 3v7d_B 260 PYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQ--------------MKCLYILSGHTDRIYSTIYDHERKRC 325 (464)
T ss_dssp TTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTT--------------TEEEEEECCCSSCEEEEEEETTTTEE
T ss_pred eEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCC--------------CcEEEEecCCCCCEEEEEEcCCCCEE
Confidence 00111 112235666766667777778899999996422 112222222234566665543 355
Q ss_pred EEEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcEEEEecCCceEEEEeCCCcEEEeeeCCCCCcccCCCCCc
Q 014382 243 ISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDH 322 (425)
Q Consensus 243 ~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqLG~~~~~~~ 322 (425)
+.-..||.|+.|-.... + ....+. .....|..++....+.+.-..+|.|.+|-.....
T Consensus 326 ~sg~~dg~i~vwd~~~~-~----------~~~~~~-~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~---------- 383 (464)
T 3v7d_B 326 ISASMDTTIRIWDLENG-E----------LMYTLQ-GHTALVGLLRLSDKFLVSAAADGSIRGWDANDYS---------- 383 (464)
T ss_dssp EEEETTSCEEEEETTTT-E----------EEEEEC-CCSSCEEEEEECSSEEEEEETTSEEEEEETTTCC----------
T ss_pred EEEeCCCcEEEEECCCC-c----------EEEEEe-CCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCc----------
Confidence 56678888988854221 0 011111 1233477777777777778899999999654321
Q ss_pred ccceEeecCCCCcEEEEEcCCCeeEEEeCCCCEEEeeCCC
Q 014382 323 CSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRGT 362 (425)
Q Consensus 323 ~~p~~i~~~~~~~i~~i~~G~~~~~~l~~~g~vy~wG~n~ 362 (425)
............+..+..... .++...+|.|+.|=...
T Consensus 384 -~~~~~~~~~~~~~~~~~~~~~-~l~~~~dg~i~iwd~~~ 421 (464)
T 3v7d_B 384 -RKFSYHHTNLSAITTFYVSDN-ILVSGSENQFNIYNLRS 421 (464)
T ss_dssp -EEEEEECTTCCCEEEEEECSS-EEEEEETTEEEEEETTT
T ss_pred -eeeeecCCCCccEEEEEeCCC-EEEEecCCeEEEEECCC
Confidence 112222222334555555443 44445589999996543
No 24
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=94.58 E-value=4.5 Score=41.03 Aligned_cols=72 Identities=21% Similarity=0.199 Sum_probs=37.7
Q ss_pred CceEEEEeCCCcEEEeeeCCCCCcccCCCCCcccceEeecCCCCcEEEEE----cCCCeeE-EEeCCCCEEEeeCCCCC
Q 014382 291 WRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQIS----CGWRHTL-AVTERQNVFSWGRGTNG 364 (425)
Q Consensus 291 ~~~~~~lt~~g~v~~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~----~G~~~~~-~l~~~g~vy~wG~n~~g 364 (425)
..|++++..+|+||+.|-...++. .+.......+...... ..+...+. .-.+|+. ++..+|+||..|-+.++
T Consensus 457 ~~~~~~~l~~g~i~v~GG~~~~~~-~~~~~~~~~v~~ydp~-t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~ 533 (656)
T 1k3i_A 457 TFHTSVVLPDGSTFITGGQRRGIP-FEDSTPVFTPEIYVPE-QDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCG 533 (656)
T ss_dssp BSCEEEECTTSCEEEECCBSBCCT-TCCCSBCCCCEEEEGG-GTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCT
T ss_pred ccCCeEECCCCCEEEECCcccCcC-cCCCCcccceEEEcCC-CCceeecCCCCCccccccHhhcCCCcEEEecCCCCCC
Confidence 357777777999999985443321 1111111122222111 11222221 1234654 45689999999987655
No 25
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=94.40 E-value=2.9 Score=38.00 Aligned_cols=304 Identities=12% Similarity=0.061 Sum_probs=144.6
Q ss_pred CCCeEEEecc------CCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecC-CCCCcEEEEEcCCC------eEE
Q 014382 18 FRPVLLISAG------ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSA-LDGHEIVSVTCGAD------HTT 84 (425)
Q Consensus 18 ~~~i~~i~~g------~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~-~~~~~i~~i~~G~~------~~~ 84 (425)
..+|..++.. ....++-..++.|.+|-......+ ........ .....|..++.... ..+
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~ 89 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI--------RLLQSYVDADADENFYTCAWTYDSNTSHPLLA 89 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE--------EEEEEEECSCTTCCEEEEEEEECTTTCCEEEE
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE--------EeeeeccccCCCCcEEEEEeccCCCCCCCEEE
Confidence 4578888875 444666668889999975432111 01111111 11235666665433 344
Q ss_pred EEEcCCCEEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeC---CCEEEEEEcCCCEEEEeCCCCCccCCCCC
Q 014382 85 AYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG---DSHCLAVTVEGEVQSWGRNQNGQLGLGTT 161 (425)
Q Consensus 85 ~lt~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G---~~~~~~lt~~G~vy~~G~n~~gqlg~~~~ 161 (425)
.-..+ |.|..|-.... + ....+. .....|..+... ....+.-+.+|.|+.|-.....
T Consensus 90 ~~~~d-g~i~v~d~~~~-~----------~~~~~~-~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------- 149 (366)
T 3k26_A 90 VAGSR-GIIRIINPITM-Q----------CIKHYV-GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT------- 149 (366)
T ss_dssp EEETT-CEEEEECTTTC-C----------EEEEEE-SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE-------
T ss_pred EecCC-CEEEEEEchhc-e----------Eeeeec-CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe-------
Confidence 44566 99999953321 0 011111 123467777764 3566666789999999653311
Q ss_pred CCcccceeee--ccCCceEEEEEeC--CCeEEEEecCCcEEEeeCCCCCCCC-------CCC--CCCCcce-----eeee
Q 014382 162 EDSLVPQKLQ--AFEGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLG-------LGD--RNDRLIP-----EKVA 223 (425)
Q Consensus 162 ~~~~~p~~~~--~~~~~~i~~i~~G--~~~~~~L~~~g~vy~~G~n~~gqlg-------~~~--~~~~~~p-----~~v~ 223 (425)
....+. ......|..++.. ....+.-..+|.|+.|-......+. ... ......+ ....
T Consensus 150 ----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (366)
T 3k26_A 150 ----LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFS 225 (366)
T ss_dssp ----EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEE
T ss_pred ----EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccc
Confidence 011110 1123456767654 3345556678999999643311000 000 0000000 0011
Q ss_pred eeecCCCeEEEEEecCceEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeecccc--CCcEEEEec--C--CceEEEE
Q 014382 224 TVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALR--ESFISQISG--G--WRHTMAV 297 (425)
Q Consensus 224 ~~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~--~~~i~~i~~--G--~~~~~~l 297 (425)
........|..++-.....+.-..+|.|..|-.....+.-............+..+. ...|..++. - ....+.-
T Consensus 226 ~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~ 305 (366)
T 3k26_A 226 TRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALG 305 (366)
T ss_dssp ECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEE
T ss_pred cccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEE
Confidence 111123345555555666677778899988875432221000000000111111111 111322222 2 3455556
Q ss_pred eCCCcEEEeeeCCCCCcccCCCCCcccceEeecCC-CCcEEEEEcCCC--eeEEEeCCCCEEEeeC
Q 014382 298 TSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPL-DQKVVQISCGWR--HTLAVTERQNVFSWGR 360 (425)
Q Consensus 298 t~~g~v~~wG~n~~gqLG~~~~~~~~~p~~i~~~~-~~~i~~i~~G~~--~~~~l~~~g~vy~wG~ 360 (425)
..+|.|+.|-......+. .....+.... ...|..++...+ ..+.-..||.|+.|=.
T Consensus 306 ~~dg~i~vwd~~~~~~~~-------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 306 NQVGKLYVWDLEVEDPHK-------AKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp CTTSCEEEEECCSSSGGG-------CEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred ecCCcEEEEECCCCCCcc-------ccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 788999999754321110 0111122111 356777665433 4444558899999853
No 26
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=94.39 E-value=3.2 Score=38.43 Aligned_cols=255 Identities=13% Similarity=0.031 Sum_probs=122.9
Q ss_pred CCCCCeEEEeccCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcCCC---------eEEEE
Q 014382 16 APFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD---------HTTAY 86 (425)
Q Consensus 16 ~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~---------~~~~l 86 (425)
.-...|..++......+.-..||.|++|-...... .........+... ...|..++.... ..+..
T Consensus 14 ~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~-----~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~g~~~~~l~s~ 87 (397)
T 1sq9_A 14 AHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDN-----ENPKDKSYSHFVH-KSGLHHVDVLQAIERDAFELCLVATT 87 (397)
T ss_dssp CSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTT-----CCGGGGEEEEECC-TTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred hhhcCeEEEEecCCeEEEEcCCCEEEEEECCCccc-----ccCCCcceEEecC-CCcEEEEEEecccccCCccccEEEEE
Confidence 34568888888776666666899999998643210 0011112222222 235777665533 33334
Q ss_pred EcCCCEEEEEeCCCCCCCCCCCCCCcccceeecccC----CCCEEEEEeC------CCE-EEEEEcCCCEEEEeCCCCCc
Q 014382 87 SESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALH----SLRVKQIACG------DSH-CLAVTVEGEVQSWGRNQNGQ 155 (425)
Q Consensus 87 t~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~----~~~i~~v~~G------~~~-~~~lt~~G~vy~~G~n~~gq 155 (425)
..+ |.|+.|-...... ........+.... ...|..++.. ..+ .+..+.+|.|+.|-......
T Consensus 88 ~~d-g~i~iw~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 88 SFS-GDLLFYRITREDE------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp ETT-SCEEEEEEEECTT------TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred cCC-CCEEEEEccCCcc------cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence 456 9999995332110 0000012222221 2467766655 445 55667889999996543000
Q ss_pred cCCCCCCCcccce-eee------ccCCceEEEEEeCCC-eEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeec
Q 014382 156 LGLGTTEDSLVPQ-KLQ------AFEGVSIKMVAAGAE-HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDL 227 (425)
Q Consensus 156 lg~~~~~~~~~p~-~~~------~~~~~~i~~i~~G~~-~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~ 227 (425)
-..+. .....|. .+. ......|..++...+ ..+.-..+|.|+.|-... ...+..+..
T Consensus 161 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~--------------~~~~~~~~~ 225 (397)
T 1sq9_A 161 ESNSL-TLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELST--------------LRPLYNFES 225 (397)
T ss_dssp HHHHT-TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTT--------------TEEEEEEEC
T ss_pred ccccc-eeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCC--------------CceeEEEec
Confidence 00000 0011111 111 112234555554433 444445678888886422 112222222
Q ss_pred ---C---CCeEEEEEec--CceEEEEecC---CCEEEecCCCCCcCCCCCCCCcccceeeccc------------cCCcE
Q 014382 228 ---Q---REKMVMVACG--WRHTISVSSS---GRLYSYGWSKYGQLGHGDFKDHLVPCQLEAL------------RESFI 284 (425)
Q Consensus 228 ---~---~~~i~~i~~g--~~~~~~lt~~---G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~------------~~~~i 284 (425)
. ...|..++.. ..+.++-..+ |.|+.|-...... ...+... ....|
T Consensus 226 ~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~v 294 (397)
T 1sq9_A 226 QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER-----------IGSLSVPTHSSQASLGEFAHSSWV 294 (397)
T ss_dssp CC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE-----------EEEECBC--------CCBSBSSCE
T ss_pred cccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc-----------cceeccCcccccccccccccCCcE
Confidence 1 3456666553 3344455566 7888886432111 1111110 23346
Q ss_pred EEEecC--CceEEEEeCCCcEEEeeeC
Q 014382 285 SQISGG--WRHTMAVTSDGKLYGWGWN 309 (425)
Q Consensus 285 ~~i~~G--~~~~~~lt~~g~v~~wG~n 309 (425)
..++.. ....+.-..+|.|++|-..
T Consensus 295 ~~~~~~~~~~~l~~~~~dg~i~iwd~~ 321 (397)
T 1sq9_A 295 MSLSFNDSGETLCSAGWDGKLRFWDVK 321 (397)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 666554 3445555678999999654
No 27
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=93.59 E-value=3.9 Score=36.62 Aligned_cols=216 Identities=11% Similarity=0.014 Sum_probs=119.3
Q ss_pred CCCeEEEecc--CCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEc---CCCeEEEEEcCCCE
Q 014382 18 FRPVLLISAG--ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTC---GADHTTAYSESCMQ 92 (425)
Q Consensus 18 ~~~i~~i~~g--~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~---G~~~~~~lt~~~g~ 92 (425)
...+..+... ..+.+++|++|++|.---.+ | +.. ... . + ..++++|+.+.+ .....+++|++ |.
T Consensus 23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~---l--p~~--~~~-~-l-l~~~e~i~~v~~~~~~~~~~v~~T~~-G~ 91 (276)
T 3no0_A 23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQ---A--LQG--SKV-S-L-KSREEKIVGAFIREKFGNRLLLATKK-GY 91 (276)
T ss_dssp CCCEEEEEEEETTSCEEEEETTSEEEEECSHH---H--HTS--EEC-C-C-SSTTCCEEEEEEGGGSCSEEEEEETT-SE
T ss_pred CCeEEEEEEECCCCEEEEEcCCCeEEEEEhhh---C--ccC--ccc-c-c-CCCCCEEEEEECCcCCCCEEEEEeCC-CE
Confidence 3445554433 44588999999999543211 1 000 000 0 3 334678888865 23467888888 99
Q ss_pred EEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEe--CCCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceee
Q 014382 93 VYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIAC--GDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKL 170 (425)
Q Consensus 93 v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~--G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~ 170 (425)
+.-.-..++-+- ......+....+..++.+.. +..+.+++|++|++|.+-......+|....-.. .+
T Consensus 92 iKr~~l~~~~~~-------~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~----~i 160 (276)
T 3no0_A 92 VKKIPLAEFEYK-------AQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ----GI 160 (276)
T ss_dssp EEEEEGGGTTTC-------STTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE----CC
T ss_pred EEEEEHHHhhhh-------cCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE----EE
Confidence 888865544210 00111222223456665544 456799999999999997666555544322111 12
Q ss_pred eccCCceEEEEEeC--CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEE--ecCceEEEEe
Q 014382 171 QAFEGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVA--CGWRHTISVS 246 (425)
Q Consensus 171 ~~~~~~~i~~i~~G--~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~--~g~~~~~~lt 246 (425)
...++.+|+.+... ....+++|++|.+.-.-..++-....+...... + ..+.+++.+. .+.+..++++
T Consensus 161 ~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~-------i-~~~~~lv~~~~~~~~~~i~~~t 232 (276)
T 3no0_A 161 KLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEV-------S-GTKDTLVDLIPIKEEVELLITT 232 (276)
T ss_dssp CCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEEC-------C-CSSSCEEEEEEESSEEEEEEEE
T ss_pred ccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEE-------E-cCCCcEEEEEEeCCCCEEEEEc
Confidence 22234566665433 346788899998887765444332221111000 1 1233455443 3456888999
Q ss_pred cCCCEEE--ecCCCCCcCC
Q 014382 247 SSGRLYS--YGWSKYGQLG 263 (425)
Q Consensus 247 ~~G~vy~--~G~n~~gqlg 263 (425)
++|++.. +-.++...+|
T Consensus 233 ~~G~~ir~~~~~~~i~~~~ 251 (276)
T 3no0_A 233 KNGKAFYDKINQKDIPLST 251 (276)
T ss_dssp TTSCEEEEEEEGGGSCBCC
T ss_pred CCCeEEEeeeCHHHCCCcC
Confidence 9999988 7554444443
No 28
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=93.58 E-value=4.1 Score=36.89 Aligned_cols=236 Identities=13% Similarity=0.102 Sum_probs=120.7
Q ss_pred CCcEEEEEcCCC----eEEEE-EcCCCEEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeCC--CEEEEEEcC
Q 014382 70 GHEIVSVTCGAD----HTTAY-SESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--SHCLAVTVE 142 (425)
Q Consensus 70 ~~~i~~i~~G~~----~~~~l-t~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~--~~~~~lt~~ 142 (425)
...|..++.... ..++. ..| |.|..|-....++ .....+. .....|..++... .+.+..+.+
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~d-g~i~iw~~~~~~~---------~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWA-NDVRCWEVQDSGQ---------TIPKAQQ-MHTGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETT-SEEEEEEECTTSC---------EEEEEEE-ECSSCEEEEEECTTSSEEEEEETT
T ss_pred CCceEEEEEcCCCCCceEEEEECCC-CcEEEEEcCCCCc---------eeEEEec-cccCCEEEEEECcCCCEEEEEcCC
Confidence 357888887765 34444 445 9999996433211 0111111 1234677776643 456667789
Q ss_pred CCEEEEeCCCCCccCCCCCCCcccceeeeccCCceEEEEEe--CCC--eEEEEecCCcEEEeeCCCCCCCCCCCCCCCcc
Q 014382 143 GEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAA--GAE--HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLI 218 (425)
Q Consensus 143 G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~--G~~--~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~ 218 (425)
|.|..|-..... ...... ....|..++. ..+ ..+.-..+|.|+.|-....
T Consensus 108 g~v~iwd~~~~~------------~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~------------- 161 (368)
T 3mmy_A 108 KTAKMWDLSSNQ------------AIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS------------- 161 (368)
T ss_dssp SEEEEEETTTTE------------EEEEEE-CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS-------------
T ss_pred CcEEEEEcCCCC------------ceeecc-ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC-------------
Confidence 999999654311 111111 2335666664 333 3445567899999953221
Q ss_pred eeeeeeeecCCCeEEEEEecCceEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeecccc--CCcEEEEecCCce---
Q 014382 219 PEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALR--ESFISQISGGWRH--- 293 (425)
Q Consensus 219 p~~v~~~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~--~~~i~~i~~G~~~--- 293 (425)
..+..+.. ...+..+..-....++.+.++.+..|-...... ....+.... ...+..+......
T Consensus 162 -~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (368)
T 3mmy_A 162 -NPMMVLQL-PERCYCADVIYPMAVVATAERGLIVYQLENQPS----------EFRRIESPLKHQHRCVAIFKDKQNKPT 229 (368)
T ss_dssp -SCSEEEEC-SSCEEEEEEETTEEEEEEGGGCEEEEECSSSCE----------EEEECCCSCSSCEEEEEEEECTTSCEE
T ss_pred -cEEEEEec-CCCceEEEecCCeeEEEeCCCcEEEEEeccccc----------hhhhccccccCCCceEEEcccCCCCCC
Confidence 01111111 235666666667778888899998886533211 011111111 1123333333222
Q ss_pred -EEEEeCCCcEEEeeeCCCCCcccCCCCCcccceEeecCC-----------CCcEEEEEcCCC--eeEEEeCCCCEEEee
Q 014382 294 -TMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPL-----------DQKVVQISCGWR--HTLAVTERQNVFSWG 359 (425)
Q Consensus 294 -~~~lt~~g~v~~wG~n~~gqLG~~~~~~~~~p~~i~~~~-----------~~~i~~i~~G~~--~~~~l~~~g~vy~wG 359 (425)
.++-..+|.|..|-....... .....+.... ...|..++...+ ..+.-..||.|+.|=
T Consensus 230 ~~~~~~~dg~i~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd 301 (368)
T 3mmy_A 230 GFALGSIEGRVAIHYINPPNPA--------KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWD 301 (368)
T ss_dssp EEEEEETTSEEEEEESSCSCHH--------HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred eEEEecCCCcEEEEecCCCCcc--------ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEE
Confidence 566678999999865432110 0001111000 014666665433 444445899999997
Q ss_pred CCC
Q 014382 360 RGT 362 (425)
Q Consensus 360 ~n~ 362 (425)
...
T Consensus 302 ~~~ 304 (368)
T 3mmy_A 302 KDA 304 (368)
T ss_dssp TTT
T ss_pred CCC
Confidence 543
No 29
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=93.02 E-value=4.7 Score=35.97 Aligned_cols=277 Identities=9% Similarity=0.022 Sum_probs=138.5
Q ss_pred eccCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcCCCe-EEEEEcCCCEEEEEeCCCCCC
Q 014382 25 SAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADH-TTAYSESCMQVYSWGWGDFGR 103 (425)
Q Consensus 25 ~~g~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~-~~~lt~~~g~v~~wG~n~~g~ 103 (425)
..+.-..+++..||++++.+......+.... .....+...... ...|..++..... .++...+ |.|..|-......
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~-~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~~~~d-g~i~iw~~~~~~~ 84 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGI-PRHARQINTLNH-GEVVCAVTISNPTRHVYTGGK-GCVKVWDISHPGN 84 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTC-CSEEEEEEEECC-SSCCCEEEECSSSSEEEEECB-SEEEEEETTSTTC
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEecccc-CCccccceeccC-CCceEEEEEecCCcEEEEcCC-CeEEEEECCCCCc
Confidence 3445567889999999988875543332211 111122222222 2356666654433 3344446 9999996543221
Q ss_pred CCCCCCCCcccceeec-ccCCCCEEEEEeCC--CEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeeccCCceEEE
Q 014382 104 LGHGNSSDLFTPLPIK-ALHSLRVKQIACGD--SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKM 180 (425)
Q Consensus 104 lg~~~~~~~~~p~~v~-~~~~~~i~~v~~G~--~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~ 180 (425)
. . ....+. ......|..++... ...+....+|.|+.|-..... .............|..
T Consensus 85 ~------~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~----------~~~~~~~~~~~~~i~~ 146 (337)
T 1gxr_A 85 K------S--PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT----------PRIKAELTSSAPACYA 146 (337)
T ss_dssp C------S--CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC------------EEEEEEECSSSCEEE
T ss_pred e------e--eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC----------cceeeecccCCCceEE
Confidence 1 0 001111 01234566666653 445556778999999653310 0011111112234666
Q ss_pred EEeC--CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEecC--ceEEEEecCCCEEEecC
Q 014382 181 VAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW--RHTISVSSSGRLYSYGW 256 (425)
Q Consensus 181 i~~G--~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~g~--~~~~~lt~~G~vy~~G~ 256 (425)
++.. ....+.-..+|.|+.|-.... ..+..+......|..++... ...+....+|.|+.|-.
T Consensus 147 ~~~~~~~~~l~~~~~dg~v~~~d~~~~--------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~ 212 (337)
T 1gxr_A 147 LAISPDSKVCFSCCSDGNIAVWDLHNQ--------------TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL 212 (337)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTT--------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCC--------------ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEEC
Confidence 5543 344555667899999863221 12222222244566666543 35555667888998864
Q ss_pred CCCCcCCCCCCCCcccceeeccccCCcEEEEec--CCceEEEEeCCCcEEEeeeCCCCCcccCCCCCcccceEeecCCCC
Q 014382 257 SKYGQLGHGDFKDHLVPCQLEALRESFISQISG--GWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQ 334 (425)
Q Consensus 257 n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~~~~~lt~~g~v~~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~ 334 (425)
..... ..... ....+..++. .....++-..+|.|+.|-..... ...+ .....
T Consensus 213 ~~~~~-----------~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~------------~~~~-~~~~~ 266 (337)
T 1gxr_A 213 REGRQ-----------LQQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD------------KYQL-HLHES 266 (337)
T ss_dssp TTTEE-----------EEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC------------EEEE-CCCSS
T ss_pred CCCce-----------Eeeec--CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC------------eEEE-cCCcc
Confidence 32110 11111 1222555443 33445555678888888543211 1111 12234
Q ss_pred cEEEEEcCC--CeeEEEeCCCCEEEeeCCC
Q 014382 335 KVVQISCGW--RHTLAVTERQNVFSWGRGT 362 (425)
Q Consensus 335 ~i~~i~~G~--~~~~~l~~~g~vy~wG~n~ 362 (425)
.|..++... ...+.-..+|.|+.|-...
T Consensus 267 ~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~ 296 (337)
T 1gxr_A 267 CVLSLKFAYCGKWFVSTGKDNLLNAWRTPY 296 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred ceeEEEECCCCCEEEEecCCCcEEEEECCC
Confidence 566666543 3444555789999997543
No 30
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=92.93 E-value=5.2 Score=36.20 Aligned_cols=258 Identities=10% Similarity=0.061 Sum_probs=121.1
Q ss_pred CCeEEEeccCC------ceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcCC---CeEEEEEcC
Q 014382 19 RPVLLISAGAS------HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGA---DHTTAYSES 89 (425)
Q Consensus 19 ~~i~~i~~g~~------~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~---~~~~~lt~~ 89 (425)
..|..++.... ..+.-..||.|.+|-.... + ....+... ...|..++... ...+....|
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~-~----------~~~~~~~~-~~~i~~~~~~~~~~~~l~s~~~d 137 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM-Q----------CIKHYVGH-GNAINELKFHPRDPNLLLSVSKD 137 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC-C----------EEEEEESC-CSCEEEEEECSSCTTEEEEEETT
T ss_pred CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc-e----------EeeeecCC-CCcEEEEEECCCCCCEEEEEeCC
Confidence 45666665433 3444557888888864321 1 11112212 23577777643 344455566
Q ss_pred CCEEEEEeCCCCCCCCCCCCCCcccceeec--ccCCCCEEEEEeC--CCEEEEEEcCCCEEEEeCCCCCccC-------C
Q 014382 90 CMQVYSWGWGDFGRLGHGNSSDLFTPLPIK--ALHSLRVKQIACG--DSHCLAVTVEGEVQSWGRNQNGQLG-------L 158 (425)
Q Consensus 90 ~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~--~~~~~~i~~v~~G--~~~~~~lt~~G~vy~~G~n~~gqlg-------~ 158 (425)
|.|+.|-..... ....+. ......|..++.. ..+.+....+|.|+.|-......+. .
T Consensus 138 -g~i~iwd~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 205 (366)
T 3k26_A 138 -HALRLWNIQTDT-----------LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDY 205 (366)
T ss_dssp -SCEEEEETTTTE-----------EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTC
T ss_pred -CeEEEEEeecCe-----------EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEe
Confidence 999999533210 111111 1123467777765 3456666789999999754321100 0
Q ss_pred CCC--CCc------ccce-eeeccCCceEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCC
Q 014382 159 GTT--EDS------LVPQ-KLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQR 229 (425)
Q Consensus 159 ~~~--~~~------~~p~-~~~~~~~~~i~~i~~G~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~ 229 (425)
... ... ..+. .........|..++......+.-..+|.|..|-.....+.-............+..+....
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (366)
T 3k26_A 206 NPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ 285 (366)
T ss_dssp CGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS
T ss_pred cCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccC
Confidence 000 000 0000 0000022345555444566777778999999975442221111111111112222222222
Q ss_pred CeEEEEEec----CceEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeecccc-CCcEEEEecC--CceEEEEeCCCc
Q 014382 230 EKMVMVACG----WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALR-ESFISQISGG--WRHTMAVTSDGK 302 (425)
Q Consensus 230 ~~i~~i~~g----~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~-~~~i~~i~~G--~~~~~~lt~~g~ 302 (425)
..|..++.. ..+.++-..+|.|+.|-......+ ......+.... ...|..++.. ....+.-..+|.
T Consensus 286 ~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~-------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 358 (366)
T 3k26_A 286 CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPH-------KAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDAS 358 (366)
T ss_dssp CCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGG-------GCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSE
T ss_pred CcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCc-------cccceEEcccccCCceEEEEeCCCCCeEEEEeCCCE
Confidence 233333332 345555667888988865332110 00111121111 2346666543 334555668888
Q ss_pred EEEee
Q 014382 303 LYGWG 307 (425)
Q Consensus 303 v~~wG 307 (425)
|+.|-
T Consensus 359 i~iwd 363 (366)
T 3k26_A 359 IWRWD 363 (366)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98884
No 31
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=92.91 E-value=4.6 Score=35.60 Aligned_cols=185 Identities=11% Similarity=0.072 Sum_probs=101.1
Q ss_pred CcEEEEEcCCCeEEEEEcCCCEEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEe---CCCEEEEEEcCCCEEE
Q 014382 71 HEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIAC---GDSHCLAVTVEGEVQS 147 (425)
Q Consensus 71 ~~i~~i~~G~~~~~~lt~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~---G~~~~~~lt~~G~vy~ 147 (425)
..|..++......+....+ |.|..|- .+ .+..........+..+.. .....+..+.+|.|+.
T Consensus 105 ~~i~~~~~~~~~l~~~~~d-~~i~~~d---~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i 169 (313)
T 3odt_A 105 GNVCSLSFQDGVVISGSWD-KTAKVWK---EG-----------SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKL 169 (313)
T ss_dssp SCEEEEEEETTEEEEEETT-SEEEEEE---TT-----------EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cCEEEEEecCCEEEEEeCC-CCEEEEc---CC-----------cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEE
Confidence 4677888766666667777 9999994 10 111111112335555544 5677777888999999
Q ss_pred EeCCCCCccCCCCCCCcccceeeeccCCceEEEEEeC-CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeee
Q 014382 148 WGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG-AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVD 226 (425)
Q Consensus 148 ~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G-~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~ 226 (425)
|-... ....+.......|..++.. ....++-..+|.|+.|-.... ..+..+.
T Consensus 170 ~d~~~-------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~--------------~~~~~~~ 222 (313)
T 3odt_A 170 WQNDK-------------VIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTG--------------DVLRTYE 222 (313)
T ss_dssp EETTE-------------EEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTC--------------CEEEEEE
T ss_pred EecCc-------------eEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCch--------------hhhhhhh
Confidence 95110 0111111123345555432 223566678899999964321 1222222
Q ss_pred cCCCeEEEEEecCc-eEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcEEEEecCCc-eEEEEeCCCcEE
Q 014382 227 LQREKMVMVACGWR-HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWR-HTMAVTSDGKLY 304 (425)
Q Consensus 227 ~~~~~i~~i~~g~~-~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G~~-~~~~lt~~g~v~ 304 (425)
.....|..++...+ ..++...+|.|+.|-.... .+..........|..++...+ ..++-..+|.|+
T Consensus 223 ~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~ 290 (313)
T 3odt_A 223 GHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENG------------SLKQVITLPAISIWSVDCMSNGDIIVGSSDNLVR 290 (313)
T ss_dssp CCSSCEEEEEECTTSCEEEEETTSEEEEECTTTC------------CEEEEEECSSSCEEEEEECTTSCEEEEETTSCEE
T ss_pred cCCceEEEEEEecCCCEEEEecCCEEEEEECCCC------------ceeEEEeccCceEEEEEEccCCCEEEEeCCCcEE
Confidence 23446777665543 4556667899999864221 111111122334766665333 355667889999
Q ss_pred EeeeC
Q 014382 305 GWGWN 309 (425)
Q Consensus 305 ~wG~n 309 (425)
.|-..
T Consensus 291 iw~~~ 295 (313)
T 3odt_A 291 IFSQE 295 (313)
T ss_dssp EEESC
T ss_pred EEeCC
Confidence 99654
No 32
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=92.41 E-value=6.6 Score=36.14 Aligned_cols=233 Identities=11% Similarity=0.073 Sum_probs=108.9
Q ss_pred cEEEEEcCCCeEEEEEcCCCEEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeCC--CEEEEEEcCCCEEEEe
Q 014382 72 EIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--SHCLAVTVEGEVQSWG 149 (425)
Q Consensus 72 ~i~~i~~G~~~~~~lt~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~--~~~~~lt~~G~vy~~G 149 (425)
.|..++......++....+|.|..|=-..... .........-....|..|+... .+.+.-..+|.|..|-
T Consensus 96 ~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~--------~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd 167 (357)
T 4g56_B 96 GVTDVAWVSEKGILVASDSGAVELWEILEKES--------LLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWD 167 (357)
T ss_dssp CEEEEEEETTTEEEEEETTSCEEEC----------------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred CEEEEEEcCCCCEEEEECCCEEEEeeccccce--------eEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 47776654433333333338888883221100 0000000001123577666543 4555567889999995
Q ss_pred CCCCCccCCCCCCCcccceeeecc--CCceEEEEEeCC---CeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeee
Q 014382 150 RNQNGQLGLGTTEDSLVPQKLQAF--EGVSIKMVAAGA---EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVAT 224 (425)
Q Consensus 150 ~n~~gqlg~~~~~~~~~p~~~~~~--~~~~i~~i~~G~---~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~ 224 (425)
.... ..+..+ ....|..++... ...+.-..||.|..|-......+. .+ .
T Consensus 168 ~~~~--------------~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~-----------~~-~ 221 (357)
T 4g56_B 168 LSQK--------------AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPAT-----------RI-D 221 (357)
T ss_dssp TTTT--------------EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBC-----------BC-C
T ss_pred CCCC--------------cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceee-----------ee-e
Confidence 4321 111111 123566666532 344556678999998432211100 00 0
Q ss_pred eecCCCeEEEEEec---CceEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcEEEEecCC---ceEEEEe
Q 014382 225 VDLQREKMVMVACG---WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGW---RHTMAVT 298 (425)
Q Consensus 225 ~~~~~~~i~~i~~g---~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G~---~~~~~lt 298 (425)
.......+..++.. ....+.-..++.|+.|-..... ....+. .....|..++... ...+.-.
T Consensus 222 ~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~-----------~~~~~~-~~~~~v~~l~~sp~~~~~lasgs 289 (357)
T 4g56_B 222 FCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD-----------SAQTSA-VHSQNITGLAYSYHSSPFLASIS 289 (357)
T ss_dssp CTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG-----------GCEEEC-CCSSCEEEEEECSSSSCCEEEEE
T ss_pred eccccccccchhhhhcccceEEEeecccceeEEECCCCc-----------EeEEEe-ccceeEEEEEEcCCCCCEEEEEe
Confidence 01112345555543 2223334678888888532110 111111 1223477776532 2333456
Q ss_pred CCCcEEEeeeCCCCCcccCCCCCcccceEeecCCCCcEEEEEcCC-C--eeEEEeCCCCEEEeeCCCC
Q 014382 299 SDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGW-R--HTLAVTERQNVFSWGRGTN 363 (425)
Q Consensus 299 ~~g~v~~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~-~--~~~~l~~~g~vy~wG~n~~ 363 (425)
+||.|++|=... ++ ... .+.....|..|+... + ..+.-..||.|+.|=-...
T Consensus 290 ~D~~i~iwd~~~-~~-----------~~~-~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 290 EDCTVAVLDADF-SE-----------VFR-DLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp TTSCEEEECTTS-CE-----------EEE-ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred CCCEEEEEECCC-Cc-----------EeE-ECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 889999994321 11 111 122335677777542 2 2333458999999965443
No 33
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=91.90 E-value=6.6 Score=35.05 Aligned_cols=217 Identities=12% Similarity=0.021 Sum_probs=116.0
Q ss_pred CCCEEEEEe--CCCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeeccCCceEEEEEe---CCCeEEEEecCCcE
Q 014382 123 SLRVKQIAC--GDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAA---GAEHSVAVAEDGEL 197 (425)
Q Consensus 123 ~~~i~~v~~--G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~---G~~~~~~L~~~g~v 197 (425)
+..+..+.. ...+.+++|++|++|.--......... ..+ ..++++|+.+.+ .....+++|++|.+
T Consensus 23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~---------~~l-l~~~e~i~~v~~~~~~~~~~v~~T~~G~i 92 (276)
T 3no0_A 23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSK---------VSL-KSREEKIVGAFIREKFGNRLLLATKKGYV 92 (276)
T ss_dssp CCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEE---------CCC-SSTTCCEEEEEEGGGSCSEEEEEETTSEE
T ss_pred CCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcc---------ccc-CCCCCEEEEEECCcCCCCEEEEEeCCCEE
Confidence 445555543 346689999999999764322110000 003 234667888765 13568899999999
Q ss_pred EEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEe--cCceEEEEecCCCEEEecCCCCCcCCCCCCCCccccee
Q 014382 198 YGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVAC--GWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQ 275 (425)
Q Consensus 198 y~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~--g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~ 275 (425)
.-.-..++.+- ........+. .+..++.+.. +.++.+++|++|++|.+-..+...+|....-.. .
T Consensus 93 Kr~~l~~~~~~--------~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~----~ 159 (276)
T 3no0_A 93 KKIPLAEFEYK--------AQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ----G 159 (276)
T ss_dssp EEEEGGGTTTC--------STTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE----C
T ss_pred EEEEHHHhhhh--------cCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE----E
Confidence 87764443210 0001111111 1334544433 455789999999999986555444433221110 1
Q ss_pred eccccCCcEEEEecC--CceEEEEeCCCcEEEeeeCCCCCcccCCCCCcccceEeecCCCCcEEEE--EcCCCeeEEEeC
Q 014382 276 LEALRESFISQISGG--WRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQI--SCGWRHTLAVTE 351 (425)
Q Consensus 276 v~~~~~~~i~~i~~G--~~~~~~lt~~g~v~~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i--~~G~~~~~~l~~ 351 (425)
+..-.+..|..+... ....+++|++|.+.-.-...+-..+.+... ... +..+..++.+ ..+....+++++
T Consensus 160 i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkG-----v~~-i~~~~~lv~~~~~~~~~~i~~~t~ 233 (276)
T 3no0_A 160 IKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKG-----TEV-SGTKDTLVDLIPIKEEVELLITTK 233 (276)
T ss_dssp CCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCC-----EEC-CCSSSCEEEEEEESSEEEEEEEET
T ss_pred EccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcc-----eEE-EcCCCcEEEEEEeCCCCEEEEEcC
Confidence 222234556665432 346778899998777654443322221100 000 0222344443 235667888999
Q ss_pred CCCEEE--eeCCCCCccCC
Q 014382 352 RQNVFS--WGRGTNGQLGH 368 (425)
Q Consensus 352 ~g~vy~--wG~n~~gqLG~ 368 (425)
+|++.- +-.++--.+|.
T Consensus 234 ~G~~ir~~~~~~~i~~~~R 252 (276)
T 3no0_A 234 NGKAFYDKINQKDIPLSTK 252 (276)
T ss_dssp TSCEEEEEEEGGGSCBCCT
T ss_pred CCeEEEeeeCHHHCCCcCC
Confidence 999988 76555444443
No 34
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=91.79 E-value=7.2 Score=35.21 Aligned_cols=200 Identities=13% Similarity=0.069 Sum_probs=94.5
Q ss_pred CCCeEEEeccCCc--eEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcC--CCeEEEEEcCCCEE
Q 014382 18 FRPVLLISAGASH--SVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG--ADHTTAYSESCMQV 93 (425)
Q Consensus 18 ~~~i~~i~~g~~~--~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~~~~~lt~~~g~v 93 (425)
...|..++..... .+.-..||.|++|-.... .....+... ...|..++.. ....+....| |.|
T Consensus 32 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-----------~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~d-g~i 98 (369)
T 3zwl_B 32 ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG-----------ERLGTLDGH-TGTIWSIDVDCFTKYCVTGSAD-YSI 98 (369)
T ss_dssp SSCEEEEEECTTSCEEEEEESSSCEEEEETTTC-----------CEEEEECCC-SSCEEEEEECTTSSEEEEEETT-TEE
T ss_pred eceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-----------hhhhhhhhc-CCcEEEEEEcCCCCEEEEEeCC-CeE
Confidence 4467676665433 333346888888854321 111122222 2357777655 3344455566 999
Q ss_pred EEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeCC--CEEEEEEcC-----CCEEEEeCCCCCccCCCCCCCccc
Q 014382 94 YSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--SHCLAVTVE-----GEVQSWGRNQNGQLGLGTTEDSLV 166 (425)
Q Consensus 94 ~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~--~~~~~lt~~-----G~vy~~G~n~~gqlg~~~~~~~~~ 166 (425)
+.|-...... ...+. ....|..++... .+.++...+ |.|+.|-.........-.......
T Consensus 99 ~iwd~~~~~~-----------~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~ 165 (369)
T 3zwl_B 99 KLWDVSNGQC-----------VATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEP 165 (369)
T ss_dssp EEEETTTCCE-----------EEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSC
T ss_pred EEEECCCCcE-----------EEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccce
Confidence 9995332110 01111 233566555543 445555556 888888643322111000000000
Q ss_pred ceeee-ccCCceEEEEEeC--CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEecC--ce
Q 014382 167 PQKLQ-AFEGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW--RH 241 (425)
Q Consensus 167 p~~~~-~~~~~~i~~i~~G--~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~g~--~~ 241 (425)
...+. ......+..++.. ....++-..+|.|+.|-.... ...+..+......|..++... ..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~ 232 (369)
T 3zwl_B 166 IHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNN-------------YEYVDSIDLHEKSISDMQFSPDLTY 232 (369)
T ss_dssp SEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTT-------------TEEEEEEECCSSCEEEEEECTTSSE
T ss_pred eeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCC-------------cEeEEEEecCCCceeEEEECCCCCE
Confidence 01111 1111134444433 334555567888998863221 112222222344666666543 34
Q ss_pred EEEEecCCCEEEecC
Q 014382 242 TISVSSSGRLYSYGW 256 (425)
Q Consensus 242 ~~~lt~~G~vy~~G~ 256 (425)
.++...+|.|+.|-.
T Consensus 233 l~~~~~d~~i~v~d~ 247 (369)
T 3zwl_B 233 FITSSRDTNSFLVDV 247 (369)
T ss_dssp EEEEETTSEEEEEET
T ss_pred EEEecCCceEEEEEC
Confidence 455567888888853
No 35
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=91.07 E-value=8.4 Score=34.64 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=12.7
Q ss_pred CceEEEEecCCCEEEecCC
Q 014382 239 WRHTISVSSSGRLYSYGWS 257 (425)
Q Consensus 239 ~~~~~~lt~~G~vy~~G~n 257 (425)
..|+++. -+++||.+|-.
T Consensus 140 ~~~~~~~-~~~~iyv~GG~ 157 (315)
T 4asc_A 140 YGHTVLS-HMDLVYVIGGK 157 (315)
T ss_dssp BSCEEEE-ETTEEEEECCB
T ss_pred cceeEEE-ECCEEEEEeCC
Confidence 4566665 57899999953
No 36
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=90.57 E-value=8.4 Score=33.83 Aligned_cols=269 Identities=14% Similarity=0.044 Sum_probs=139.4
Q ss_pred CCCCeEEEecc-CCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcC--CCeEEEEEcCCCEE
Q 014382 17 PFRPVLLISAG-ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG--ADHTTAYSESCMQV 93 (425)
Q Consensus 17 ~~~~i~~i~~g-~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~~~~~lt~~~g~v 93 (425)
-...|..++.- +...+.-..||.|++|-.... .....+... ...|..++.. ....+.-..+ |.|
T Consensus 17 h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~-----------~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d-g~i 83 (313)
T 3odt_A 17 HDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQ-----------WLGTVVYTG-QGFLNSVCYDSEKELLLFGGKD-TMI 83 (313)
T ss_dssp CSSCEEEEEEEETTEEEEEETTSEEEEEEESSS-----------EEEEEEEEC-SSCEEEEEEETTTTEEEEEETT-SCE
T ss_pred CCCCcEEEEecCCCEEEEEEcCCcEEEEECCCC-----------EEEEEeecC-CccEEEEEECCCCCEEEEecCC-CeE
Confidence 34567777653 233444557899999975321 111122211 2245555443 3444555566 888
Q ss_pred EEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeCCCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeecc
Q 014382 94 YSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAF 173 (425)
Q Consensus 94 ~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~ 173 (425)
..|--..... ..+..........|..++......+..+.+|.|+.|-. + .+......
T Consensus 84 ~~~~~~~~~~---------~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~---~-----------~~~~~~~~ 140 (313)
T 3odt_A 84 NGVPLFATSG---------EDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKE---G-----------SLVYNLQA 140 (313)
T ss_dssp EEEETTCCTT---------SCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEET---T-----------EEEEEEEC
T ss_pred EEEEeeecCC---------CCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcC---C-----------cEEEeccc
Confidence 8885332110 01111111123467888887788888888999999951 0 01111111
Q ss_pred CCceEEEEEe---CCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeec-CCCeEEEEEecCc-eEEEEecC
Q 014382 174 EGVSIKMVAA---GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDL-QREKMVMVACGWR-HTISVSSS 248 (425)
Q Consensus 174 ~~~~i~~i~~---G~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~-~~~~i~~i~~g~~-~~~~lt~~ 248 (425)
....+..+.. .....+.-..+|.|+.|-.. ..+..+.. ....+..++...+ ..++...+
T Consensus 141 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~----------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d 204 (313)
T 3odt_A 141 HNASVWDAKVVSFSENKFLTASADKTIKLWQND----------------KVIKTFSGIHNDVVRHLAVVDDGHFISCSND 204 (313)
T ss_dssp CSSCEEEEEEEETTTTEEEEEETTSCEEEEETT----------------EEEEEECSSCSSCEEEEEEEETTEEEEEETT
T ss_pred CCCceeEEEEccCCCCEEEEEECCCCEEEEecC----------------ceEEEEeccCcccEEEEEEcCCCeEEEccCC
Confidence 2234544433 45666777788999999411 11111111 2344555544322 35556678
Q ss_pred CCEEEecCCCCCcCCCCCCCCcccceeeccccCCcEEEEecCCc-eEEEEeCCCcEEEeeeCCCCCcccCCCCCcccceE
Q 014382 249 GRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWR-HTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQ 327 (425)
Q Consensus 249 G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G~~-~~~~lt~~g~v~~wG~n~~gqLG~~~~~~~~~p~~ 327 (425)
|.|+.|-..... ....+. .....|..++...+ ..++-..+|.|+.|-.... .+..
T Consensus 205 g~i~i~d~~~~~-----------~~~~~~-~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~------------~~~~ 260 (313)
T 3odt_A 205 GLIKLVDMHTGD-----------VLRTYE-GHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENG------------SLKQ 260 (313)
T ss_dssp SEEEEEETTTCC-----------EEEEEE-CCSSCEEEEEECTTSCEEEEETTSEEEEECTTTC------------CEEE
T ss_pred CeEEEEECCchh-----------hhhhhh-cCCceEEEEEEecCCCEEEEecCCEEEEEECCCC------------ceeE
Confidence 889888643211 011111 12234666665433 4555678899999954321 1112
Q ss_pred eecCCCCcEEEEEcCCC-eeEEEeCCCCEEEeeCC
Q 014382 328 VKFPLDQKVVQISCGWR-HTLAVTERQNVFSWGRG 361 (425)
Q Consensus 328 i~~~~~~~i~~i~~G~~-~~~~l~~~g~vy~wG~n 361 (425)
.-......|..++...+ ..++-..||.|+.|=..
T Consensus 261 ~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 261 VITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQE 295 (313)
T ss_dssp EEECSSSCEEEEEECTTSCEEEEETTSCEEEEESC
T ss_pred EEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCC
Confidence 11122346777765433 35556689999999754
No 37
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=90.46 E-value=9.5 Score=34.25 Aligned_cols=288 Identities=12% Similarity=0.059 Sum_probs=136.1
Q ss_pred CCCeEEEeccCCc-eEEEEc-----CCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcCCC----e-EEEE
Q 014382 18 FRPVLLISAGASH-SVALLS-----GNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD----H-TTAY 86 (425)
Q Consensus 18 ~~~i~~i~~g~~~-~~~l~~-----~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~----~-~~~l 86 (425)
...|..++..... .++... ||.|++|-..... ..+..... ....|..++.... . .+.-
T Consensus 18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~----------~~~~~~~~-~~~~v~~~~~~~~~~~~~~l~~~ 86 (357)
T 3i2n_A 18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD----------LKLLREIE-KAKPIKCGTFGATSLQQRYLATG 86 (357)
T ss_dssp SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSS----------EEEEEEEE-ESSCEEEEECTTCCTTTCCEEEE
T ss_pred CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCc----------ccceeeec-ccCcEEEEEEcCCCCCCceEEEe
Confidence 4467777766543 333333 7888888643211 11111111 1235777777653 3 3444
Q ss_pred EcCCCEEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEE--------eCCCEEEEEEcCCCEEEEeCCCCCccCC
Q 014382 87 SESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIA--------CGDSHCLAVTVEGEVQSWGRNQNGQLGL 158 (425)
Q Consensus 87 t~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~--------~G~~~~~~lt~~G~vy~~G~n~~gqlg~ 158 (425)
..+ |.|..|-.....+ ....+. .....|..+. ....+.+.-..+|.|..|-......
T Consensus 87 ~~d-g~i~iwd~~~~~~----------~~~~~~-~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~--- 151 (357)
T 3i2n_A 87 DFG-GNLHIWNLEAPEM----------PVYSVK-GHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD--- 151 (357)
T ss_dssp ETT-SCEEEECTTSCSS----------CSEEEC-CCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS---
T ss_pred cCC-CeEEEEeCCCCCc----------cEEEEE-ecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC---
Confidence 456 9999995433210 001111 1223566663 2344666677899999996433210
Q ss_pred CCCCCcccceeeeccC---CceEEEEE------eCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCC
Q 014382 159 GTTEDSLVPQKLQAFE---GVSIKMVA------AGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQR 229 (425)
Q Consensus 159 ~~~~~~~~p~~~~~~~---~~~i~~i~------~G~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~ 229 (425)
....+.... ...+..++ ......+.-..+|.|+.|-.... .+... .. ..
T Consensus 152 -------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------------~~~~~--~~-~~ 209 (357)
T 3i2n_A 152 -------PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM------------ALRWE--TN-IK 209 (357)
T ss_dssp -------CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT------------EEEEE--EE-CS
T ss_pred -------cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC------------ceeee--cC-CC
Confidence 011111111 22455555 23444555567899999964221 01111 11 13
Q ss_pred CeEEEEEec-----CceEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcEEEEecCCc---eEEEEeCCC
Q 014382 230 EKMVMVACG-----WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWR---HTMAVTSDG 301 (425)
Q Consensus 230 ~~i~~i~~g-----~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G~~---~~~~lt~~g 301 (425)
..|..++.. ....++-..+|.|+.|-......+ ........ ......|..++...+ ..+.-..+|
T Consensus 210 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg 282 (357)
T 3i2n_A 210 NGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT------KGFASVSE-KAHKSTVWQVRHLPQNRELFLTAGGAG 282 (357)
T ss_dssp SCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT------TEEEEEEE-ECCSSCEEEEEEETTEEEEEEEEETTS
T ss_pred CceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc------cceeeecc-CCCcCCEEEEEECCCCCcEEEEEeCCC
Confidence 456666654 345556677888888854221100 00000011 112234776665444 334456889
Q ss_pred cEEEeeeCCCCCcccCCCCC-------cccceEeecCCCCcEEEEEcCCCe-eEE--EeCCCCEEEeeC
Q 014382 302 KLYGWGWNKFGQVGVGDNVD-------HCSPVQVKFPLDQKVVQISCGWRH-TLA--VTERQNVFSWGR 360 (425)
Q Consensus 302 ~v~~wG~n~~gqLG~~~~~~-------~~~p~~i~~~~~~~i~~i~~G~~~-~~~--l~~~g~vy~wG~ 360 (425)
.|+.|-.......-...... ...+..........|..++...+. .++ -..||.|+.|=.
T Consensus 283 ~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~ 351 (357)
T 3i2n_A 283 GLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIV 351 (357)
T ss_dssp EEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred cEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEEC
Confidence 99999755322210000000 001111111223457666654332 232 457888888854
No 38
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=90.39 E-value=9.2 Score=33.96 Aligned_cols=236 Identities=13% Similarity=0.070 Sum_probs=114.6
Q ss_pred CCCeEEEEEcCCCEEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeCC-CEEEEEEcCCCEEEEeCCCCCccC
Q 014382 79 GADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD-SHCLAVTVEGEVQSWGRNQNGQLG 157 (425)
Q Consensus 79 G~~~~~~lt~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~-~~~~~lt~~G~vy~~G~n~~gqlg 157 (425)
+.-..+++..| |+++..+......+..... ....+.... .....|..++... ...++...+|.|..|-.......
T Consensus 10 ~~v~~~~~s~d-g~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~- 85 (337)
T 1gxr_A 10 KPAYSFHVTAD-GQMQPVPFPPDALIGPGIP-RHARQINTL-NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNK- 85 (337)
T ss_dssp EECCEEEECSS-SCEEECCCCTTSSSSTTCC-SEEEEEEEE-CCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCC-
T ss_pred CceeEEEECCC-CCEEEeecCCCcEeccccC-Cccccceec-cCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCce-
Confidence 34456777888 8888877654433222111 111111111 1233566666543 33344444899999965432111
Q ss_pred CCCCCCcccceeee-ccCCceEEEEEeCCC--eEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEE
Q 014382 158 LGTTEDSLVPQKLQ-AFEGVSIKMVAAGAE--HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVM 234 (425)
Q Consensus 158 ~~~~~~~~~p~~~~-~~~~~~i~~i~~G~~--~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~ 234 (425)
. ....+. ......|..++...+ ..+.-..+|.|+.|-.... .+.....+......|..
T Consensus 86 ------~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~------------~~~~~~~~~~~~~~i~~ 146 (337)
T 1gxr_A 86 ------S-PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP------------TPRIKAELTSSAPACYA 146 (337)
T ss_dssp ------S-CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--------------EEEEEEECSSSCEEE
T ss_pred ------e-eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCC------------CcceeeecccCCCceEE
Confidence 0 001111 012335666655433 3445567889999863221 11122222223445666
Q ss_pred EEec--CceEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcEEEEecC--CceEEEEeCCCcEEEeeeCC
Q 014382 235 VACG--WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGG--WRHTMAVTSDGKLYGWGWNK 310 (425)
Q Consensus 235 i~~g--~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~~~~~lt~~g~v~~wG~n~ 310 (425)
++.. ..+.+.-..+|.|+.|-..... ....+.. ....|..++.. ....+.-..+|.|+.|-...
T Consensus 147 ~~~~~~~~~l~~~~~dg~v~~~d~~~~~-----------~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 214 (337)
T 1gxr_A 147 LAISPDSKVCFSCCSDGNIAVWDLHNQT-----------LVRQFQG-HTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE 214 (337)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTE-----------EEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCCc-----------eeeeeec-ccCceEEEEECCCCCEEEEEecCCcEEEEECCC
Confidence 6553 3455566678999988643211 1111111 22336666543 33555567889999996433
Q ss_pred CCCcccCCCCCcccceEeecCCCCcEEEEEcC--CCeeEEEeCCCCEEEeeCCC
Q 014382 311 FGQVGVGDNVDHCSPVQVKFPLDQKVVQISCG--WRHTLAVTERQNVFSWGRGT 362 (425)
Q Consensus 311 ~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G--~~~~~~l~~~g~vy~wG~n~ 362 (425)
... ...+. ....+..++.. ....++-..+|.|+.|=...
T Consensus 215 ~~~-----------~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~ 255 (337)
T 1gxr_A 215 GRQ-----------LQQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK 255 (337)
T ss_dssp TEE-----------EEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred Cce-----------Eeeec--CCCceEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence 211 11111 22345555543 33444445788888886543
No 39
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=89.33 E-value=13 Score=34.08 Aligned_cols=301 Identities=9% Similarity=-0.026 Sum_probs=142.3
Q ss_pred CCCCeEEEeccC---CceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeec----CCCCCcEEEEEcC---CCeEEEE
Q 014382 17 PFRPVLLISAGA---SHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLS----ALDGHEIVSVTCG---ADHTTAY 86 (425)
Q Consensus 17 ~~~~i~~i~~g~---~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~----~~~~~~i~~i~~G---~~~~~~l 86 (425)
-..+|..++... ...+.-..||.|.+|-.........- .......+. ......|..++.. ....+..
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 118 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYY---TCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS 118 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCE---EECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEE
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceE---eccccccccccccccCCCcEEEEEEccCCCcEEEEE
Confidence 456788888765 33444557999999975532211100 000000000 0122357777764 3345555
Q ss_pred EcCCCEEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeCC-----CEEEEEEcCCCEEEEeCCCCCccCCCCC
Q 014382 87 SESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD-----SHCLAVTVEGEVQSWGRNQNGQLGLGTT 161 (425)
Q Consensus 87 t~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~-----~~~~~lt~~G~vy~~G~n~~gqlg~~~~ 161 (425)
..+ |.|..|-.... .+..... ....+..+.... ...++-+.+|.|+.|-......
T Consensus 119 ~~d-~~i~iwd~~~~------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~------ 178 (408)
T 4a11_B 119 SFD-KTLKVWDTNTL------------QTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC------ 178 (408)
T ss_dssp ETT-SEEEEEETTTT------------EEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC------
T ss_pred eCC-CeEEEeeCCCC------------ccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce------
Confidence 567 99999953321 1111111 122455554432 2566677889999996533211
Q ss_pred CCcccceeeeccCCceEEEEEeCCCe---EEEEecCCcEEEeeCCCCCCCCC-CCC-CCCcceeeeeeeecCCCeEEEEE
Q 014382 162 EDSLVPQKLQAFEGVSIKMVAAGAEH---SVAVAEDGELYGWGWGRYGNLGL-GDR-NDRLIPEKVATVDLQREKMVMVA 236 (425)
Q Consensus 162 ~~~~~p~~~~~~~~~~i~~i~~G~~~---~~~L~~~g~vy~~G~n~~gqlg~-~~~-~~~~~p~~v~~~~~~~~~i~~i~ 236 (425)
...+.. ....|..++..... .+.-..+|.|+.|-.......-. -.. ..................|..++
T Consensus 179 -----~~~~~~-~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 252 (408)
T 4a11_B 179 -----SHILQG-HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC 252 (408)
T ss_dssp -----CEEECC-CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEE
T ss_pred -----eeeecC-CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEE
Confidence 111111 22356666554332 45567889999997543221100 000 00000000000011234566666
Q ss_pred ecC--ceEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcEEEEecCCceEEEEeCCCcEEEeeeCCCCCc
Q 014382 237 CGW--RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQV 314 (425)
Q Consensus 237 ~g~--~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqL 314 (425)
... .+.+....+|.|+.|-......+-.... ...........+..........++...++.|+.|-.....
T Consensus 253 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-- 325 (408)
T 4a11_B 253 FTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYG-----KVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGE-- 325 (408)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCBCCCCCC-----CCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCC--
T ss_pred EcCCCCEEEEecCCCeEEEEECCCCccceeccc-----cccccccccceeEEecCCCceEEEEecCCEEEEEECcCCc--
Confidence 543 3556667899999997544322111000 0000001111122222334455556778899998654321
Q ss_pred ccCCCCCcccceEeecCCCCcEEEEEcCC--CeeEEEeCCCCEEEeeCCCC
Q 014382 315 GVGDNVDHCSPVQVKFPLDQKVVQISCGW--RHTLAVTERQNVFSWGRGTN 363 (425)
Q Consensus 315 G~~~~~~~~~p~~i~~~~~~~i~~i~~G~--~~~~~l~~~g~vy~wG~n~~ 363 (425)
+...-......|..++... ...+.-..||.|+.|=....
T Consensus 326 ----------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 326 ----------QITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp ----------EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred ----------ceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence 1111111234566655543 34445558999999976543
No 40
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=88.95 E-value=14 Score=34.19 Aligned_cols=225 Identities=9% Similarity=0.029 Sum_probs=118.4
Q ss_pred EEEcCCCeEEEEEcCCCEEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeCC--CEEEEEEcCCCEEEEeCCC
Q 014382 75 SVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--SHCLAVTVEGEVQSWGRNQ 152 (425)
Q Consensus 75 ~i~~G~~~~~~lt~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~--~~~~~lt~~G~vy~~G~n~ 152 (425)
.+.......++...+ |.|+.|-.... + ....+.......|..++... .+.++-+.+|.|..|-...
T Consensus 98 ~~~~s~~~l~~~~~d-~~v~lw~~~~~-~----------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 165 (401)
T 4aez_A 98 LLDWSNLNVVAVALE-RNVYVWNADSG-S----------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES 165 (401)
T ss_dssp CEEECTTSEEEEEET-TEEEEEETTTC-C----------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EEeecCCCEEEEECC-CeEEEeeCCCC-c----------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcC
Confidence 355555677778888 99999964321 1 11112221244677776643 4566667799999996533
Q ss_pred CCccCCCCCCCcccceeeeccCCceEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeE
Q 014382 153 NGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKM 232 (425)
Q Consensus 153 ~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i 232 (425)
... ...+. .....|..++......+.-..+|.|+.|-....+ ..+..+......|
T Consensus 166 ~~~-----------~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~-------------~~~~~~~~~~~~v 220 (401)
T 4aez_A 166 QTK-----------LRTMA-GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIAN-------------HQIGTLQGHSSEV 220 (401)
T ss_dssp CCE-----------EEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSS-------------CEEEEEECCSSCE
T ss_pred CeE-----------EEEec-CCCCceEEEEECCCEEEEEcCCCCEEEEecccCc-------------ceeeEEcCCCCCe
Confidence 211 11111 1234577777766777777889999999643211 1122222223466
Q ss_pred EEEEecC--ceEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcEEEEecC--CceEEEEe---CCCcEEE
Q 014382 233 VMVACGW--RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGG--WRHTMAVT---SDGKLYG 305 (425)
Q Consensus 233 ~~i~~g~--~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~~~~~lt---~~g~v~~ 305 (425)
..++... .+.+.-..||.|+.|-..... +..........|..++.. ..+.++.. .+|.|+.
T Consensus 221 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~------------~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i 288 (401)
T 4aez_A 221 CGLAWRSDGLQLASGGNDNVVQIWDARSSI------------PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHF 288 (401)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTCSS------------EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEE
T ss_pred eEEEEcCCCCEEEEEeCCCeEEEccCCCCC------------ccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEE
Confidence 6666543 345555678999998643211 111111112224444433 23344433 5888999
Q ss_pred eeeCCCCCcccCCCCCcccceEeecCCCCcEEEEEcCCCeeEEEe----CCCCEEEeeCC
Q 014382 306 WGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVT----ERQNVFSWGRG 361 (425)
Q Consensus 306 wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~l~----~~g~vy~wG~n 361 (425)
|-...... ...+. ....|..++...+...++. .+|.|+.|=..
T Consensus 289 ~d~~~~~~-----------~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~ 335 (401)
T 4aez_A 289 WNAATGAR-----------VNTVD--AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYS 335 (401)
T ss_dssp EETTTCCE-----------EEEEE--CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEE
T ss_pred EECCCCCE-----------EEEEe--CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecC
Confidence 85432111 11111 2345666665433332222 58889888643
No 41
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=88.65 E-value=16 Score=34.43 Aligned_cols=241 Identities=9% Similarity=0.041 Sum_probs=128.6
Q ss_pred EEEEEcCCCeEEEEEcCCCEEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeCC-CEEEEEEcCCCEEEEeCC
Q 014382 73 IVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD-SHCLAVTVEGEVQSWGRN 151 (425)
Q Consensus 73 i~~i~~G~~~~~~lt~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~-~~~~~lt~~G~vy~~G~n 151 (425)
+..++......+.-..| |.|..|-.... .+.....-....|..++... ...+.-..||.|..|-..
T Consensus 125 ~~~~~~~~~~l~sgs~d-g~i~vwd~~~~------------~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~ 191 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADD-KMIRVYDSINK------------KFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIK 191 (464)
T ss_dssp EEEEEEETTEEEEEETT-SCEEEEETTTT------------EEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETT
T ss_pred EEEEEECCCEEEEEcCC-CcEEEEECCCC------------cEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECC
Confidence 45566656666666777 99999953221 11111111233677777654 366667789999999653
Q ss_pred CCCccCCCCCCCcccceeeeccCCceEEEEEeC----CCeEEEEecCCcEEEeeCCCCCCCCCCCCCC---------Ccc
Q 014382 152 QNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG----AEHSVAVAEDGELYGWGWGRYGNLGLGDRND---------RLI 218 (425)
Q Consensus 152 ~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G----~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~---------~~~ 218 (425)
... ....+.. ....|..++.. ....+.-..+|.|..|-.............. ...
T Consensus 192 ~~~-----------~~~~~~~-h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (464)
T 3v7d_B 192 KGC-----------CTHVFEG-HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEEN 259 (464)
T ss_dssp TTE-----------EEEEECC-CSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGC
T ss_pred CCc-----------EEEEECC-CCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCC
Confidence 311 0111111 12345544432 2455666788999999755432221100000 000
Q ss_pred eeeeeeeecCCCeEEEEEecCceEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcEEEEecC--CceEEE
Q 014382 219 PEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGG--WRHTMA 296 (425)
Q Consensus 219 p~~v~~~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~~~~~ 296 (425)
+..+..+......+..+.......+.-..||.|+.|-...... ...+. .....|..++.. ....+.
T Consensus 260 ~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~-----------~~~~~-~~~~~v~~~~~~~~~~~l~s 327 (464)
T 3v7d_B 260 PYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKC-----------LYILS-GHTDRIYSTIYDHERKRCIS 327 (464)
T ss_dssp TTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEE-----------EEEEC-CCSSCEEEEEEETTTTEEEE
T ss_pred eEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-----------EEEec-CCCCCEEEEEEcCCCCEEEE
Confidence 1112222223456777777777778888899999996432110 11111 112335555443 335556
Q ss_pred EeCCCcEEEeeeCCCCCcccCCCCCcccceEeecCCCCcEEEEEcCCCeeEEEeCCCCEEEeeCCC
Q 014382 297 VTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRGT 362 (425)
Q Consensus 297 lt~~g~v~~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~l~~~g~vy~wG~n~ 362 (425)
-..+|.|+.|-.... .+...-......|..++....+.+.-..||.|..|=...
T Consensus 328 g~~dg~i~vwd~~~~------------~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~ 381 (464)
T 3v7d_B 328 ASMDTTIRIWDLENG------------ELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAND 381 (464)
T ss_dssp EETTSCEEEEETTTT------------EEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred EeCCCcEEEEECCCC------------cEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCC
Confidence 678889999854321 111111123356777777777777778999999997654
No 42
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=88.29 E-value=20 Score=35.04 Aligned_cols=186 Identities=14% Similarity=0.139 Sum_probs=96.8
Q ss_pred cEEEEEcCCC---eEEEEEcCCCEEEEEeCCCCCCCCCCCCCCcccceeecccCCC---CEEEEEeCCC---EEEEEEcC
Q 014382 72 EIVSVTCGAD---HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSL---RVKQIACGDS---HCLAVTVE 142 (425)
Q Consensus 72 ~i~~i~~G~~---~~~~lt~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~---~i~~v~~G~~---~~~~lt~~ 142 (425)
.|..++.... ..+....+ +.|..|-.... .....+.. ... .|..++.... ..+..+.+
T Consensus 162 ~v~~~~~~~~~~~~l~~~~~d-~~v~vwd~~~~-----------~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d 228 (615)
T 1pgu_A 162 RINACHLKQSRPMRSMTVGDD-GSVVFYQGPPF-----------KFSASDRT-HHKQGSFVRDVEFSPDSGEFVITVGSD 228 (615)
T ss_dssp CEEEEEECSSSSCEEEEEETT-TEEEEEETTTB-----------EEEEEECS-SSCTTCCEEEEEECSTTCCEEEEEETT
T ss_pred cEEEEEECCCCCcEEEEEeCC-CcEEEEeCCCc-----------ceeeeecc-cCCCCceEEEEEECCCCCCEEEEEeCC
Confidence 4666665444 34444556 99999952211 00111111 122 5777776543 55666789
Q ss_pred CCEEEEeCCCCCccCCCCCCCcccceeeec---cCCceEEEEEe-CCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcc
Q 014382 143 GEVQSWGRNQNGQLGLGTTEDSLVPQKLQA---FEGVSIKMVAA-GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLI 218 (425)
Q Consensus 143 G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~---~~~~~i~~i~~-G~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~ 218 (425)
|.|+.|-......+ ..+.. .....|..++. .....+....+|.|..|-....
T Consensus 229 g~i~vwd~~~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~------------- 284 (615)
T 1pgu_A 229 RKISCFDGKSGEFL-----------KYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS------------- 284 (615)
T ss_dssp CCEEEEETTTCCEE-----------EECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT-------------
T ss_pred CeEEEEECCCCCEe-----------EEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCC-------------
Confidence 99999965331111 11100 12235655554 3445556667889999964321
Q ss_pred eeeeeeeecC----CCeEEEEEe-cCceEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcEEEEecCCce
Q 014382 219 PEKVATVDLQ----REKMVMVAC-GWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRH 293 (425)
Q Consensus 219 p~~v~~~~~~----~~~i~~i~~-g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~ 293 (425)
..+..+... ...+..+.. ...+.++.+.+|.|+.|-... ..+..........|..++. .+
T Consensus 285 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~------------~~~~~~~~~~~~~v~~~~~-~~- 349 (615)
T 1pgu_A 285 -KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGH------------DEVLKTISGHNKGITALTV-NP- 349 (615)
T ss_dssp -EEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTE------------EEEEEEECCCSSCEEEEET-TT-
T ss_pred -cEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCC------------CcEEEEEeCCCCCEEEEEe-cC-
Confidence 111111111 122333322 455667777899999986422 1111111122345888888 66
Q ss_pred EEEEeCCCcEEEeeeC
Q 014382 294 TMAVTSDGKLYGWGWN 309 (425)
Q Consensus 294 ~~~lt~~g~v~~wG~n 309 (425)
.+.-..+|.|..|-..
T Consensus 350 l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 350 LISGSYDGRIMEWSSS 365 (615)
T ss_dssp TEEEETTSCEEETTTT
T ss_pred cEEECCCCeEEEEEch
Confidence 5666788999998543
No 43
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=88.23 E-value=15 Score=33.51 Aligned_cols=18 Identities=22% Similarity=0.185 Sum_probs=13.5
Q ss_pred CCEEEEEEcCCCEEEEeCC
Q 014382 133 DSHCLAVTVEGEVQSWGRN 151 (425)
Q Consensus 133 ~~~~~~lt~~G~vy~~G~n 151 (425)
..|++++ .+++||++|-.
T Consensus 110 ~~~~~~~-~~~~iyv~GG~ 127 (357)
T 2uvk_A 110 AGHVTFV-HNGKAYVTGGV 127 (357)
T ss_dssp SSEEEEE-ETTEEEEEECC
T ss_pred ccceEEE-ECCEEEEEeCc
Confidence 3666666 78999999953
No 44
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=86.92 E-value=16 Score=32.43 Aligned_cols=61 Identities=20% Similarity=0.229 Sum_probs=30.3
Q ss_pred CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEE----ecCceEEEEecCCCEEEecC
Q 014382 185 AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVA----CGWRHTISVSSSGRLYSYGW 256 (425)
Q Consensus 185 ~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~----~g~~~~~~lt~~G~vy~~G~ 256 (425)
..|+++.. +++||++|-...+. .....+..++........+. .-..|+++.. +++||.+|-
T Consensus 93 ~~~~~~~~-~~~iyv~GG~~~~~---------~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG 157 (306)
T 3ii7_A 93 DSLAACAA-EGKIYTSGGSEVGN---------SALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA-NGLIYVCGG 157 (306)
T ss_dssp BSCEEEEE-TTEEEEECCBBTTB---------SCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECC
T ss_pred cceeEEEE-CCEEEEECCCCCCC---------cEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE-CCEEEEECC
Confidence 35666555 78999998432111 01112222222222333331 1235665554 789999994
No 45
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=86.76 E-value=19 Score=32.98 Aligned_cols=222 Identities=13% Similarity=0.063 Sum_probs=116.4
Q ss_pred EEeCCCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeeccCCceEEEEEeCC-----CeEEEEecCCcEEEeeCC
Q 014382 129 IACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA-----EHSVAVAEDGELYGWGWG 203 (425)
Q Consensus 129 v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G~-----~~~~~L~~~g~vy~~G~n 203 (425)
.+....+.+++|+.|++|..-.......+....- ......+...++++|+.+.... ...+++|++|.+.-.-..
T Consensus 49 ~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G-~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~ 127 (327)
T 3uc1_A 49 VCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG-QHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLT 127 (327)
T ss_dssp EEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC-EEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGG
T ss_pred EeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC-EEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHH
Confidence 3456688899999999998875443333221110 0011122223467788876554 467889999988866533
Q ss_pred CCCCCCCCCCCCCcceeeeeeeec-CCCeEEEE--EecCceEEEEecCCCEEEecCC--CCCcCCCCCCCCcccceeecc
Q 014382 204 RYGNLGLGDRNDRLIPEKVATVDL-QREKMVMV--ACGWRHTISVSSSGRLYSYGWS--KYGQLGHGDFKDHLVPCQLEA 278 (425)
Q Consensus 204 ~~gqlg~~~~~~~~~p~~v~~~~~-~~~~i~~i--~~g~~~~~~lt~~G~vy~~G~n--~~gqlg~~~~~~~~~p~~v~~ 278 (425)
++-... . .-+..+.+ .+..++.+ ..+.++.+++|++|++|.+-.. +-..+|....-. ..+..
T Consensus 128 ~~~~~~------r---~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv----~~i~L 194 (327)
T 3uc1_A 128 DFDSNR------S---GGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGV----QGMRF 194 (327)
T ss_dssp GGCCCC------S---SCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCE----ESSCC
T ss_pred Hhhccc------c---CceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCe----eeecC
Confidence 321110 0 01111111 12344433 3466788999999999998876 433333322111 11222
Q ss_pred ccCCcEEEEecC--CceEEEEeCCCcEEEeeeCCCCCcccCCCCCcccceEeecCC-CCcEEEE--EcCCCeeEEEeCCC
Q 014382 279 LRESFISQISGG--WRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPL-DQKVVQI--SCGWRHTLAVTERQ 353 (425)
Q Consensus 279 ~~~~~i~~i~~G--~~~~~~lt~~g~v~~wG~n~~gqLG~~~~~~~~~p~~i~~~~-~~~i~~i--~~G~~~~~~l~~~g 353 (425)
-.+..|+.+..- ..+.+++|++|.+.-.=...+-..+.+.. --..+.+.. +..++.+ ..+....++++++|
T Consensus 195 ~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~----G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G 270 (327)
T 3uc1_A 195 NIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGK----GVLTVMYDRRRGRLVGALIVDDDSELYAVTSGG 270 (327)
T ss_dssp CTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSC----CEESSCCCTTTCSEEEEEEECTTCEEEEEEGGG
T ss_pred CCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCC----cEEEEEecCCCCeEEEEEEeCCCccEEEEcCCC
Confidence 234557766543 34677788888666543222211111100 001111111 2234433 23667888999999
Q ss_pred CEEEeeCCCCCccCC
Q 014382 354 NVFSWGRGTNGQLGH 368 (425)
Q Consensus 354 ~vy~wG~n~~gqLG~ 368 (425)
++.-+-..+--.+|.
T Consensus 271 ~~ir~~~~~i~~~gR 285 (327)
T 3uc1_A 271 GVIRTAARQVRKAGR 285 (327)
T ss_dssp CEEEEEGGGSCBCCT
T ss_pred eEEEEehhhccccCC
Confidence 998885554444443
No 46
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=86.56 E-value=18 Score=32.48 Aligned_cols=62 Identities=16% Similarity=0.166 Sum_probs=32.7
Q ss_pred CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEe----cCceEEEEecCCCEEEecC
Q 014382 185 AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVAC----GWRHTISVSSSGRLYSYGW 256 (425)
Q Consensus 185 ~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~----g~~~~~~lt~~G~vy~~G~ 256 (425)
..|+++.. +++||++|-... . .......+..++........+.. -..|+++. .+++||.+|-
T Consensus 101 ~~~~~~~~-~~~iyv~GG~~~-------~-~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG 166 (318)
T 2woz_A 101 CLFGLGEV-DDKIYVVAGKDL-------Q-TEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGG 166 (318)
T ss_dssp CSCEEEEE-TTEEEEEEEEBT-------T-TCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECC
T ss_pred cccceEEE-CCEEEEEcCccC-------C-CCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcC
Confidence 35666665 689999983221 0 01111223333333334444321 23566666 5889999994
No 47
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=86.41 E-value=26 Score=34.26 Aligned_cols=149 Identities=10% Similarity=-0.013 Sum_probs=76.4
Q ss_pred eEEEEEeCCCeEEEEec-CCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEec--CceEEEEecCCCEEE
Q 014382 177 SIKMVAAGAEHSVAVAE-DGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACG--WRHTISVSSSGRLYS 253 (425)
Q Consensus 177 ~i~~i~~G~~~~~~L~~-~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~g--~~~~~~lt~~G~vy~ 253 (425)
.+..++......+.-.. +|.|+.|-.... .... ..+......|..++.. ..+.+.-..+|.|+.
T Consensus 448 ~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~------------~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~i 514 (615)
T 1pgu_A 448 PGSAVSLSQNYVAVGLEEGNTIQVFKLSDL------------EVSF-DLKTPLRAKPSYISISPSETYIAAGDVMGKILL 514 (615)
T ss_dssp CEEEEEECSSEEEEEETTTSCEEEEETTEE------------EEEE-ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CceEEEEcCCEEEEeecCCCeEEEEECCCc------------cccc-cccCCccCceEEEEECCCCCEEEEcCCCCeEEE
Confidence 45555554555555566 888888864321 0000 1111123456666653 345556668899999
Q ss_pred ecCCCCCcCCCCCCCCcccceeeccccCCcEEEEecC------------CceEEEEeCCCcEEEeeeCCCCCcccCCCCC
Q 014382 254 YGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGG------------WRHTMAVTSDGKLYGWGWNKFGQVGVGDNVD 321 (425)
Q Consensus 254 ~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G------------~~~~~~lt~~g~v~~wG~n~~gqLG~~~~~~ 321 (425)
|-......+ ..+.......|..++.. ....+.-..+|.|+.|-....++
T Consensus 515 w~~~~~~~~-----------~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-------- 575 (615)
T 1pgu_A 515 YDLQSREVK-----------TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK-------- 575 (615)
T ss_dssp EETTTTEEE-----------ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC--------
T ss_pred eeCCCCcce-----------eEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCce--------
Confidence 865332111 11111122346666653 34445567889999997644321
Q ss_pred cccceEeecCCCCcEEEEEcCCCe-eEEEeCCCCEEEeeC
Q 014382 322 HCSPVQVKFPLDQKVVQISCGWRH-TLAVTERQNVFSWGR 360 (425)
Q Consensus 322 ~~~p~~i~~~~~~~i~~i~~G~~~-~~~l~~~g~vy~wG~ 360 (425)
+..........|..++...+. .+.-..||.|+.|=-
T Consensus 576 ---~~~~~~~h~~~v~~l~~s~~~~l~s~~~d~~v~iw~~ 612 (615)
T 1pgu_A 576 ---IIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV 612 (615)
T ss_dssp ---CEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred ---echhhhcCccceEEEEEcCCCCeEEecCCceEEEEee
Confidence 111111123456555543332 334457899999853
No 48
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=85.92 E-value=19 Score=32.39 Aligned_cols=238 Identities=11% Similarity=0.075 Sum_probs=119.7
Q ss_pred cEEEEEcCCCe--EEEEEcCCCEEEEEeCCCCCCCCCCCCCCcccceeeccc--CCCCEEEEEeC----CCEEEEEEcCC
Q 014382 72 EIVSVTCGADH--TTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKAL--HSLRVKQIACG----DSHCLAVTVEG 143 (425)
Q Consensus 72 ~i~~i~~G~~~--~~~lt~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~--~~~~i~~v~~G----~~~~~~lt~~G 143 (425)
.|..++..... .+.-..| |.|..|-... . ....+..+ ....|..++.. ....+....||
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d-g~i~iw~~~~----------~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg 79 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSD-KTIKIFEVEG----------E--THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 79 (379)
T ss_dssp CEEEEEECSSSSEEEEEETT-SCEEEEEEET----------T--EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred cEEEEEEcCCCCEEEEEECC-CcEEEEecCC----------C--cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC
Confidence 57777665433 3333356 9999994321 0 11122212 23467788764 46667777899
Q ss_pred CEEEEeCCCCCccCCCCCCCcccceeeeccCCceEEEEEeCC----CeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcce
Q 014382 144 EVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA----EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIP 219 (425)
Q Consensus 144 ~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G~----~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p 219 (425)
.|..|-.... ...+..........|..++... ...+.-..+|.|..|-...... ..+
T Consensus 80 ~v~iwd~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---------~~~ 140 (379)
T 3jrp_A 80 KVLIWKEENG----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT---------TSP 140 (379)
T ss_dssp CEEEEEEETT----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC---------CCE
T ss_pred EEEEEEcCCC----------ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc---------eee
Confidence 9999964321 0001111111234566666553 3566667889999996433111 111
Q ss_pred eeeeeeecCCCeEEEEEec---------------CceEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcE
Q 014382 220 EKVATVDLQREKMVMVACG---------------WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFI 284 (425)
Q Consensus 220 ~~v~~~~~~~~~i~~i~~g---------------~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i 284 (425)
.. +......|..++.. ....++-..+|.|+.|-..... ....+..........|
T Consensus 141 ~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~h~~~v 209 (379)
T 3jrp_A 141 II---IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--------QTYVLESTLEGHSDWV 209 (379)
T ss_dssp EE---EECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTT--------TEEEEEEEECCCSSCE
T ss_pred EE---ecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC--------cceeeEEEEecccCcE
Confidence 11 11123455555543 3455566788999988432110 0011111111112346
Q ss_pred EEEecCC-----ceEEEEeCCCcEEEeeeCCCCCcccCCCCCcccceEee--cCCCCcEEEEEcCCC--eeEEEeCCCCE
Q 014382 285 SQISGGW-----RHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVK--FPLDQKVVQISCGWR--HTLAVTERQNV 355 (425)
Q Consensus 285 ~~i~~G~-----~~~~~lt~~g~v~~wG~n~~gqLG~~~~~~~~~p~~i~--~~~~~~i~~i~~G~~--~~~~l~~~g~v 355 (425)
..++... ...+....+|.|..|-....... ....+. ......|..++...+ ..++-..||.|
T Consensus 210 ~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~---------~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i 280 (379)
T 3jrp_A 210 RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP---------WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKV 280 (379)
T ss_dssp EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC---------CEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSE
T ss_pred eEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCcc---------ceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcE
Confidence 6666543 34455678899999965542100 001111 112345666655433 34444688999
Q ss_pred EEeeCC
Q 014382 356 FSWGRG 361 (425)
Q Consensus 356 y~wG~n 361 (425)
+.|=.+
T Consensus 281 ~iw~~~ 286 (379)
T 3jrp_A 281 TLWKEN 286 (379)
T ss_dssp EEEEEE
T ss_pred EEEeCC
Confidence 999654
No 49
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=85.60 E-value=20 Score=32.28 Aligned_cols=242 Identities=13% Similarity=0.040 Sum_probs=121.6
Q ss_pred CCCeEEEeccCCceEE--EEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcC----CCeEEEEEcCCC
Q 014382 18 FRPVLLISAGASHSVA--LLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG----ADHTTAYSESCM 91 (425)
Q Consensus 18 ~~~i~~i~~g~~~~~~--l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G----~~~~~~lt~~~g 91 (425)
...|..++.......+ -..||.|++|=.... .......+... ...|..++.. ....+....| |
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~---------~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~d-g 79 (379)
T 3jrp_A 11 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE---------THKLIDTLTGH-EGPVWRVDWAHPKFGTILASCSYD-G 79 (379)
T ss_dssp CCCEEEEEECSSSSEEEEEETTSCEEEEEEETT---------EEEEEEEECCC-SSCEEEEEECCGGGCSEEEEEETT-S
T ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEecCCC---------cceeeeEecCC-CCcEEEEEeCCCCCCCEEEEeccC-C
Confidence 3567777765443333 336888988864310 00111112211 2357777764 4455555666 9
Q ss_pred EEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeCC----CEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccc
Q 014382 92 QVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD----SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVP 167 (425)
Q Consensus 92 ~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~----~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p 167 (425)
.|..|-.... ...+..........|..++... ...+..+.+|.|..|-...... ...
T Consensus 80 ~v~iwd~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---------~~~ 140 (379)
T 3jrp_A 80 KVLIWKEENG----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT---------TSP 140 (379)
T ss_dssp CEEEEEEETT----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC---------CCE
T ss_pred EEEEEEcCCC----------ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc---------eee
Confidence 9999953221 0011111111234677777654 4567778899999997543211 011
Q ss_pred eeeeccCCceEEEEEeC---------------CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeE
Q 014382 168 QKLQAFEGVSIKMVAAG---------------AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKM 232 (425)
Q Consensus 168 ~~~~~~~~~~i~~i~~G---------------~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i 232 (425)
..+ ......|..++.. ....+.-..+|.|+.|-.... ......+..+......|
T Consensus 141 ~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----------~~~~~~~~~~~~h~~~v 209 (379)
T 3jrp_A 141 III-DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD----------AQTYVLESTLEGHSDWV 209 (379)
T ss_dssp EEE-ECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETT----------TTEEEEEEEECCCSSCE
T ss_pred EEe-cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCC----------CcceeeEEEEecccCcE
Confidence 111 1122345555543 345566677899999953210 11111222222224467
Q ss_pred EEEEecC-----ceEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeeccc--cCCcEEEEecCC--ceEEEEeCCCcE
Q 014382 233 VMVACGW-----RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEAL--RESFISQISGGW--RHTMAVTSDGKL 303 (425)
Q Consensus 233 ~~i~~g~-----~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~--~~~~i~~i~~G~--~~~~~lt~~g~v 303 (425)
..++... ...+....||.|..|-...... .....+... ....|..++... ...++-..+|.|
T Consensus 210 ~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~---------~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i 280 (379)
T 3jrp_A 210 RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG---------PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKV 280 (379)
T ss_dssp EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS---------CCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSE
T ss_pred eEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc---------cceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcE
Confidence 7776654 3455556789999885432110 000111111 123365555433 344445688999
Q ss_pred EEeeeC
Q 014382 304 YGWGWN 309 (425)
Q Consensus 304 ~~wG~n 309 (425)
+.|=.+
T Consensus 281 ~iw~~~ 286 (379)
T 3jrp_A 281 TLWKEN 286 (379)
T ss_dssp EEEEEE
T ss_pred EEEeCC
Confidence 998655
No 50
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=85.10 E-value=47 Score=36.07 Aligned_cols=192 Identities=14% Similarity=0.144 Sum_probs=88.7
Q ss_pred CEEEEEeC-CCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeeccCCceEEEEEeC--CCeEEEEecCCcEEEee
Q 014382 125 RVKQIACG-DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG--AEHSVAVAEDGELYGWG 201 (425)
Q Consensus 125 ~i~~v~~G-~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G--~~~~~~L~~~g~vy~~G 201 (425)
.|..+... ....+....+|.|+.|-...... ...+.. ....|..++.. ....+.-..+|.|+.|-
T Consensus 1046 ~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~-----------~~~~~~-~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd 1113 (1249)
T 3sfz_A 1046 TVKDFRLLQDSRLLSWSFDGTVKVWNVITGRI-----------ERDFTC-HQGTVLSCAISSDATKFSSTSADKTAKIWS 1113 (1249)
T ss_dssp CEEEEEECSSSEEEEEESSSEEEEEETTTTCC-----------CEEEEC-CSSCCCCEEECSSSSSCEEECCSSCCCEEC
T ss_pred cEEEEEEcCCCcEEEEECCCcEEEEECCCCce-----------eEEEcc-cCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 56665553 35566777889999996543211 011111 11123333322 23445556678888885
Q ss_pred CCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEecCc--eEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeec--
Q 014382 202 WGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWR--HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLE-- 277 (425)
Q Consensus 202 ~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~g~~--~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~-- 277 (425)
......+ ..+......|..++...+ ..+.-..||.|+.|-......+.. ..|....
T Consensus 1114 ~~~~~~~--------------~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~------~~~~~~~~~ 1173 (1249)
T 3sfz_A 1114 FDLLSPL--------------HELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHS------CAPISVEEG 1173 (1249)
T ss_dssp SSSSSCS--------------BCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCC------CCCCC----
T ss_pred CCCccee--------------eeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEE------ecccccccc
Confidence 3321111 111111234555554433 344446788888886433222111 1111110
Q ss_pred -cccCCcEEEEecCCceEEEEeCCCcEEEeeeCCCCCcccCCCCCcccceEeecCCCCcEE--EEEcCCCeeEEEeCCCC
Q 014382 278 -ALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVV--QISCGWRHTLAVTERQN 354 (425)
Q Consensus 278 -~~~~~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~--~i~~G~~~~~~l~~~g~ 354 (425)
......|..++...+...+++.+|.|..|-......+.. +. .....|. .++......++...+|.
T Consensus 1174 ~~~~~~~v~~l~fs~dg~~l~s~~g~v~vwd~~~g~~~~~-----------~~-~~~~~i~~~~~s~dg~~l~~~~~dg~ 1241 (1249)
T 3sfz_A 1174 TATHGGWVTDVCFSPDSKTLVSAGGYLKWWNVATGDSSQT-----------FY-TNGTNLKKIHVSPDFRTYVTVDNLGI 1241 (1249)
T ss_dssp ---CCSCCCEEEECTTSSCEEEESSSEEEBCSSSCBCCCC-----------CC-CSSCCCCCCEECSSSCCEEEECTTCC
T ss_pred ccccCceEEEEEECCCCCEEEECCCeEEEEECCCCceeee-----------ee-ccCCcccEEEECCCCCEEEEecCCcE
Confidence 111223555555444444444458888886443222110 00 0112232 33333445566678899
Q ss_pred EEEeeC
Q 014382 355 VFSWGR 360 (425)
Q Consensus 355 vy~wG~ 360 (425)
|+.|=-
T Consensus 1242 v~vw~l 1247 (1249)
T 3sfz_A 1242 LYILQV 1247 (1249)
T ss_dssp EEEECC
T ss_pred EEEEee
Confidence 999843
No 51
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=84.91 E-value=23 Score=32.36 Aligned_cols=220 Identities=11% Similarity=0.004 Sum_probs=117.8
Q ss_pred eccCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCC--eeecCCCCCcEEEEEcCC-----CeEEEEEcCCCEEEEEe
Q 014382 25 SAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSP--TQLSALDGHEIVSVTCGA-----DHTTAYSESCMQVYSWG 97 (425)
Q Consensus 25 ~~g~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p--~~v~~~~~~~i~~i~~G~-----~~~~~lt~~~g~v~~wG 97 (425)
+......+++|+.|++|..-...--..+ ....-.| ..+...++++|+.+.... ...+++|++ |.+.-.-
T Consensus 50 ~~t~d~ll~fT~~Gr~y~~~~~~lp~~~---r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~-G~iKr~~ 125 (327)
T 3uc1_A 50 CSTHDLILFFTTQGRVYRAKAYDLPEAS---RTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRN-GLVKKSK 125 (327)
T ss_dssp EETTSEEEEEETTSEEEEEEGGGSCBCC---SSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETT-SEEEEEE
T ss_pred eCCCCEEEEEeCCCeEEEEEHHHCcCCC---ccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCC-CEEEEeE
Confidence 4556678889999999977643221111 1111122 123334567888876653 467778888 9888775
Q ss_pred CCCCCCCCCCCCCCcccceeecccCCCCEEEE--EeCCCEEEEEEcCCCEEEEeCC--CCCccCCCCCCCcccceeeecc
Q 014382 98 WGDFGRLGHGNSSDLFTPLPIKALHSLRVKQI--ACGDSHCLAVTVEGEVQSWGRN--QNGQLGLGTTEDSLVPQKLQAF 173 (425)
Q Consensus 98 ~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v--~~G~~~~~~lt~~G~vy~~G~n--~~gqlg~~~~~~~~~p~~~~~~ 173 (425)
-.++-.-. ......+....+..++.+ ..+..+.+++|++|++|.+-.. .-..+|....-. ..+...
T Consensus 126 l~~~~~~~------r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv----~~i~L~ 195 (327)
T 3uc1_A 126 LTDFDSNR------SGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGV----QGMRFN 195 (327)
T ss_dssp GGGGCCCC------SSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCE----ESSCCC
T ss_pred HHHhhccc------cCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCe----eeecCC
Confidence 44332110 001111222234445543 3466889999999999999876 544444332221 112223
Q ss_pred CCceEEEEEeC--CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEE--ecCceEEEEecCC
Q 014382 174 EGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVA--CGWRHTISVSSSG 249 (425)
Q Consensus 174 ~~~~i~~i~~G--~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~--~g~~~~~~lt~~G 249 (425)
++..|+.+..- ..+.+++|++|.+.-.-..++-....+... .....+...+..++.+. .+....++++++|
T Consensus 196 ~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G-----~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G 270 (327)
T 3uc1_A 196 IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKG-----VLTVMYDRRRGRLVGALIVDDDSELYAVTSGG 270 (327)
T ss_dssp TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCC-----EESSCCCTTTCSEEEEEEECTTCEEEEEEGGG
T ss_pred CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCc-----EEEEEecCCCCeEEEEEEeCCCccEEEEcCCC
Confidence 45667776554 346788889997776543333221111110 00001111122344433 3567889999999
Q ss_pred CEEEecCCCCCcCC
Q 014382 250 RLYSYGWSKYGQLG 263 (425)
Q Consensus 250 ~vy~~G~n~~gqlg 263 (425)
++..+-..+-...|
T Consensus 271 ~~ir~~~~~i~~~g 284 (327)
T 3uc1_A 271 GVIRTAARQVRKAG 284 (327)
T ss_dssp CEEEEEGGGSCBCC
T ss_pred eEEEEehhhccccC
Confidence 98877554443333
No 52
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=84.47 E-value=26 Score=32.64 Aligned_cols=141 Identities=18% Similarity=0.198 Sum_probs=72.4
Q ss_pred CCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcCCC--eEEEEEcCCCEEEEEeCCCCCCCC
Q 014382 28 ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD--HTTAYSESCMQVYSWGWGDFGRLG 105 (425)
Q Consensus 28 ~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~--~~~~lt~~~g~v~~wG~n~~g~lg 105 (425)
....+++--|+.||+|-... |++ .....+.. ....|..|+...+ +.+.-..| |.|..|-....
T Consensus 115 ~~n~lAvgld~tV~lWd~~t-g~~--------~~~~~~~~-~~~~V~sv~fspdg~~lasgs~D-g~v~iWd~~~~---- 179 (420)
T 4gga_A 115 SGNVLAVALDNSVYLWSASS-GDI--------LQLLQMEQ-PGEYISSVAWIKEGNYLAVGTSS-AEVQLWDVQQQ---- 179 (420)
T ss_dssp TTSEEEEEETTEEEEEETTT-CCE--------EEEEECCS-TTCCEEEEEECTTSSEEEEEETT-SCEEEEETTTT----
T ss_pred CCCEEEEEeCCEEEEEECCC-CCE--------EEEEEecC-CCCcEEEEEECCCCCEEEEEECC-CeEEEEEcCCC----
Confidence 34577788899999996432 211 00111111 1235777776543 33344566 99999953321
Q ss_pred CCCCCCcccceeecccCCCCEEEEEeCCCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeeccCCceEEEEE--e
Q 014382 106 HGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVA--A 183 (425)
Q Consensus 106 ~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~--~ 183 (425)
.+.....-....+..++......+.-..++.++.|-...... .. ..+.. ....+..+. .
T Consensus 180 --------~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~---------~~-~~~~~-h~~~~~~~~~~~ 240 (420)
T 4gga_A 180 --------KRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH---------HV-ATLSG-HSQEVCGLRWAP 240 (420)
T ss_dssp --------EEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC---------EE-EEEEC-CSSCEEEEEECT
T ss_pred --------cEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccce---------ee-EEecc-cccceeeeeecC
Confidence 111111112335677777666666667788888885432110 00 11111 112233333 3
Q ss_pred CCCeEEEEecCCcEEEeeC
Q 014382 184 GAEHSVAVAEDGELYGWGW 202 (425)
Q Consensus 184 G~~~~~~L~~~g~vy~~G~ 202 (425)
.....+....||.+..|-.
T Consensus 241 ~g~~l~s~~~D~~v~i~~~ 259 (420)
T 4gga_A 241 DGRHLASGGNDNLVNVWPS 259 (420)
T ss_dssp TSSEEEEEETTSCEEEEES
T ss_pred CCCeeeeeeccccceEEee
Confidence 3345556677888888864
No 53
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=83.66 E-value=23 Score=31.29 Aligned_cols=60 Identities=18% Similarity=0.129 Sum_probs=30.5
Q ss_pred CeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEE----ecCceEEEEecCCCEEEecCC
Q 014382 186 EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVA----CGWRHTISVSSSGRLYSYGWS 257 (425)
Q Consensus 186 ~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~----~g~~~~~~lt~~G~vy~~G~n 257 (425)
.|+++.. ++++|.+|-.... . ....+..+++.......+. .-..|+++.. +++||.+|-.
T Consensus 152 ~~~~~~~-~~~iyv~GG~~~~----~------~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~ 215 (301)
T 2vpj_A 152 GAGLVVA-SGVIYCLGGYDGL----N------ILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL-NDHIYVVGGF 215 (301)
T ss_dssp SCEEEEE-TTEEEEECCBCSS----C------BCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCB
T ss_pred cceEEEE-CCEEEEECCCCCC----c------ccceEEEEeCCCCcEEeCCCCCcccccceEEEE-CCEEEEEeCC
Confidence 4555555 7899999832110 0 1112222333333333332 1234565555 7899999853
No 54
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=82.75 E-value=29 Score=31.92 Aligned_cols=267 Identities=9% Similarity=-0.003 Sum_probs=127.8
Q ss_pred eccCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEE---EcCCCeEEEEEcCCCEEEEEeCCCC
Q 014382 25 SAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSV---TCGADHTTAYSESCMQVYSWGWGDF 101 (425)
Q Consensus 25 ~~g~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i---~~G~~~~~~lt~~~g~v~~wG~n~~ 101 (425)
+-.+...+.-..||.++.|-....... ..+....+..+ .......+.-..+ |.|..|-...
T Consensus 65 s~~g~~l~~~~~d~~v~i~d~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~- 128 (420)
T 3vl1_A 65 EKVGSHLYKARLDGHDFLFNTIIRDGS--------------KMLKRADYTAVDTAKLQMRRFILGTTE-GDIKVLDSNF- 128 (420)
T ss_dssp EEEETTEEEEEETTEEEEEECCSEETT--------------TTSCSCCEEEEEEECSSSCEEEEEETT-SCEEEECTTS-
T ss_pred eecCCeEEEEEcCCcEEEEEeccccee--------------eEEecCCceEEEEEecCCCEEEEEECC-CCEEEEeCCC-
Confidence 334455566667899999975321110 01111122222 2233344444566 8999994221
Q ss_pred CCCCCCCCCCcccceeecccCCCCEEEEEeCC--CEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeeccCCceEE
Q 014382 102 GRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIK 179 (425)
Q Consensus 102 g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~--~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~ 179 (425)
..+..........|..++... .+.+.-..||.|+.|-...... ...+.. ....|.
T Consensus 129 -----------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~-----------~~~~~~-h~~~v~ 185 (420)
T 3vl1_A 129 -----------NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN-----------PRTLIG-HRATVT 185 (420)
T ss_dssp -----------CEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC-----------CEEEEC-CSSCEE
T ss_pred -----------cceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC-----------ceEEcC-CCCcEE
Confidence 111222112234677777653 4566667789999996543211 111211 123455
Q ss_pred EEEeC--CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEe--------------------
Q 014382 180 MVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVAC-------------------- 237 (425)
Q Consensus 180 ~i~~G--~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~-------------------- 237 (425)
.++.. ....+.-..+|.|..|-......+ ..+.........+..++.
T Consensus 186 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~ 254 (420)
T 3vl1_A 186 DIAIIDRGRNVLSASLDGTIRLWECGTGTTI-----------HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLE 254 (420)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEETTTTEEE-----------EEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTC
T ss_pred EEEEcCCCCEEEEEcCCCcEEEeECCCCcee-----------EEeecCCCCCCCccEEEEecCCcceeeecccCcccceE
Confidence 55443 334555567888998864321100 000000001112222221
Q ss_pred ---cCceEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcEEEEecCCc---eEEEEeCCCcEEEeeeCCC
Q 014382 238 ---GWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWR---HTMAVTSDGKLYGWGWNKF 311 (425)
Q Consensus 238 ---g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G~~---~~~~lt~~g~v~~wG~n~~ 311 (425)
...+.++-..+|.|..|-..... .+..+.......|..++...+ ..+.-..+|.|+.|-....
T Consensus 255 ~s~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 323 (420)
T 3vl1_A 255 FGTYGKYVIAGHVSGVITVHNVFSKE-----------QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSP 323 (420)
T ss_dssp SSCTTEEEEEEETTSCEEEEETTTCC-----------EEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred EcCCCCEEEEEcCCCeEEEEECCCCc-----------eeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCC
Confidence 12244455678888888532211 111221112234666665443 5555678899999965432
Q ss_pred CCcccCCCCCcccceEeecCCCCcEEEEEcCCCeeEEE-eCCCCEEEeeCCC
Q 014382 312 GQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAV-TERQNVFSWGRGT 362 (425)
Q Consensus 312 gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~l-~~~g~vy~wG~n~ 362 (425)
.+ ....+.......|..+.......++. ..||.|..|=...
T Consensus 324 ~~----------~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 324 EC----------PVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp TS----------CSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECC
T ss_pred cC----------chhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccC
Confidence 11 11222222334566665554444444 3688999997544
No 55
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=82.73 E-value=25 Score=30.99 Aligned_cols=167 Identities=11% Similarity=0.086 Sum_probs=79.6
Q ss_pred CCceEEEEEeC-CCeEEEEecCCc-EEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEecCceEEEEecCCC-
Q 014382 174 EGVSIKMVAAG-AEHSVAVAEDGE-LYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGR- 250 (425)
Q Consensus 174 ~~~~i~~i~~G-~~~~~~L~~~g~-vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~g~~~~~~lt~~G~- 250 (425)
.+.++.-..++ ....++++.+|+ ++.++.... + ......|..+.... +.++.-.........+++.+|+
T Consensus 86 ~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~--~----~~~~~~~~~v~~~~--~G~~lv~~~~~~~v~~~d~~G~~ 157 (276)
T 3no2_A 86 PDGNALVAWCGHPSTILEVNMKGEVLSKTEFETG--I----ERPHAQFRQINKNK--KGNYLVPLFATSEVREIAPNGQL 157 (276)
T ss_dssp TTSCEEEEEESTTEEEEEECTTSCEEEEEEECCS--C----SSGGGSCSCCEECT--TSCEEEEETTTTEEEEECTTSCE
T ss_pred CCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCC--C----CcccccccCceECC--CCCEEEEecCCCEEEEECCCCCE
Confidence 34455555566 555667777886 556653210 0 00111122222211 3344433334455667777776
Q ss_pred EEEecCCCCCcCCCCCCCCcccceeeccccCCcEEEEecCCceEEEEeCC-Cc-EEEeeeCCCCCcccCCCCCcccceEe
Q 014382 251 LYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSD-GK-LYGWGWNKFGQVGVGDNVDHCSPVQV 328 (425)
Q Consensus 251 vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~-g~-v~~wG~n~~gqLG~~~~~~~~~p~~i 328 (425)
+|.++... .|..+..+.+..+.-........++++.+ |+ +|.++.+... ......|.-+
T Consensus 158 ~w~~~~~~-------------~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~------~~~l~~~~~~ 218 (276)
T 3no2_A 158 LNSVKLSG-------------TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIE------GVQLFFVAQL 218 (276)
T ss_dssp EEEEECSS-------------CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSB------SCCCSEEEEE
T ss_pred EEEEECCC-------------CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCC------Cccccccccc
Confidence 56666421 12222223333344333444456677766 65 4555533211 0012234444
Q ss_pred ecCCCCcEEEEEc-C---------CCeeEEEeCCCCEEEeeCCCCCccCC
Q 014382 329 KFPLDQKVVQISC-G---------WRHTLAVTERQNVFSWGRGTNGQLGH 368 (425)
Q Consensus 329 ~~~~~~~i~~i~~-G---------~~~~~~l~~~g~vy~wG~n~~gqLG~ 368 (425)
....+..+.-.+. | ..+.+.++.+|++ .|=.++..+.|.
T Consensus 219 ~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~-~W~~~~~~~~~~ 267 (276)
T 3no2_A 219 FPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKV-VWQLNDKVKFGM 267 (276)
T ss_dssp EECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBE-EEEECCTTTSCC
T ss_pred eEcCCCCEEEEeccCccccccccCCceEEEECCCCCE-EEEecCcccccc
Confidence 4444444443321 2 3357888888887 666666656554
No 56
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=82.26 E-value=26 Score=31.00 Aligned_cols=59 Identities=14% Similarity=0.115 Sum_probs=29.9
Q ss_pred CeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEE----ecCceEEEEecCCCEEEecC
Q 014382 186 EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVA----CGWRHTISVSSSGRLYSYGW 256 (425)
Q Consensus 186 ~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~----~g~~~~~~lt~~G~vy~~G~ 256 (425)
.|++++. +++||.+|-.... .....+..+++.......+. ....|++++. +++||.+|-
T Consensus 193 ~~~~~~~-~~~i~v~GG~~~~----------~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG 255 (306)
T 3ii7_A 193 NHGLVFV-KDKIFAVGGQNGL----------GGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV-GSIVYVLAG 255 (306)
T ss_dssp SCEEEEE-TTEEEEECCEETT----------EEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE-TTEEEEEEC
T ss_pred cceEEEE-CCEEEEEeCCCCC----------CCCceEEEeeCCCCcEEECCCCCCCccceeEEEE-CCEEEEEeC
Confidence 5666665 7899999832111 00112222222222333321 2234665555 789999985
No 57
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=81.94 E-value=31 Score=31.57 Aligned_cols=238 Identities=13% Similarity=0.077 Sum_probs=111.4
Q ss_pred CCeEEEeccCC--ceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcC--CCeEEEEEcCCCEEE
Q 014382 19 RPVLLISAGAS--HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG--ADHTTAYSESCMQVY 94 (425)
Q Consensus 19 ~~i~~i~~g~~--~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~~~~~lt~~~g~v~ 94 (425)
..|..++.... ..+.-..||.|++|-. .++ ....+... ...|..++.. ....+....+ |.|+
T Consensus 109 ~~v~~~~~s~~~~~l~~~~~dg~i~i~~~--~~~----------~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d-~~i~ 174 (425)
T 1r5m_A 109 NQVTCLAWSHDGNSIVTGVENGELRLWNK--TGA----------LLNVLNFH-RAPIVSVKWNKDGTHIISMDVE-NVTI 174 (425)
T ss_dssp BCEEEEEECTTSSEEEEEETTSCEEEEET--TSC----------EEEEECCC-CSCEEEEEECTTSSEEEEEETT-CCEE
T ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEeC--CCC----------eeeeccCC-CccEEEEEECCCCCEEEEEecC-CeEE
Confidence 37777776644 3444457889999951 111 11112211 2357666654 3344455566 9999
Q ss_pred EEeCCCCCCCCCCCCCCcccceeec----ccCCCCEEEEEe-CCCEEEEEEcCCCEEEEeCCCCCccCCCCCCCccccee
Q 014382 95 SWGWGDFGRLGHGNSSDLFTPLPIK----ALHSLRVKQIAC-GDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQK 169 (425)
Q Consensus 95 ~wG~n~~g~lg~~~~~~~~~p~~v~----~~~~~~i~~v~~-G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~ 169 (425)
.|-......+..-..... ....+. ......+..+.. .....++.+.+|.|+.|-...... ...
T Consensus 175 iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~-----------~~~ 242 (425)
T 1r5m_A 175 LWNVISGTVMQHFELKET-GGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTP-----------TGK 242 (425)
T ss_dssp EEETTTTEEEEEECCC----------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSC-----------SEE
T ss_pred EEECCCCcEEEEeecccc-CccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCce-----------eee
Confidence 996433211100000000 000000 000000222211 235566777889999996543210 011
Q ss_pred eeccCCceEEEEEe--CCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEecCc-eEEEEe
Q 014382 170 LQAFEGVSIKMVAA--GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWR-HTISVS 246 (425)
Q Consensus 170 ~~~~~~~~i~~i~~--G~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~g~~-~~~~lt 246 (425)
+. .....|..++. .....+.-..+|.|+.|-.... ..+..+......|..++...+ ..++..
T Consensus 243 ~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--------------~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 307 (425)
T 1r5m_A 243 LI-GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG--------------NSQNCFYGHSQSIVSASWVGDDKVISCS 307 (425)
T ss_dssp EC-CCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB--------------SCSEEECCCSSCEEEEEEETTTEEEEEE
T ss_pred ec-cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC--------------ccceEecCCCccEEEEEECCCCEEEEEe
Confidence 11 11234555543 3344555567888998853221 011111112345666655433 555566
Q ss_pred cCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcEEEEecC--CceEEEEeCCCcEEEeeeC
Q 014382 247 SSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGG--WRHTMAVTSDGKLYGWGWN 309 (425)
Q Consensus 247 ~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~~~~~lt~~g~v~~wG~n 309 (425)
.+|.|+.|-..... +..........|..++.. ....++-..+|.|+.|-..
T Consensus 308 ~d~~i~i~d~~~~~------------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 308 MDGSVRLWSLKQNT------------LLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp TTSEEEEEETTTTE------------EEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECH
T ss_pred CCCcEEEEECCCCc------------EeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence 78888888642211 111111122346665543 3455556778999998643
No 58
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=81.57 E-value=18 Score=31.96 Aligned_cols=59 Identities=19% Similarity=0.183 Sum_probs=29.7
Q ss_pred CeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEe----cCceEEEEecCCCEEEecC
Q 014382 186 EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVAC----GWRHTISVSSSGRLYSYGW 256 (425)
Q Consensus 186 ~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~----g~~~~~~lt~~G~vy~~G~ 256 (425)
.|+++.. +++||.+|-..... . ...+..++........+.. -..|++++. +++||.+|-
T Consensus 199 ~~~~~~~-~~~i~v~GG~~~~~----~------~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG 261 (301)
T 2vpj_A 199 GAGVALL-NDHIYVVGGFDGTA----H------LSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL-RGRLYAIAG 261 (301)
T ss_dssp SCEEEEE-TTEEEEECCBCSSS----B------CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECC
T ss_pred cceEEEE-CCEEEEEeCCCCCc----c------cceEEEEeCCCCcEEECCCCCCcccceeEEEE-CCEEEEEcC
Confidence 5555555 67999998432110 0 1122222322333333321 234565555 789999985
No 59
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=80.84 E-value=30 Score=30.74 Aligned_cols=17 Identities=18% Similarity=0.166 Sum_probs=12.2
Q ss_pred CceEEEEecCCCEEEecC
Q 014382 239 WRHTISVSSSGRLYSYGW 256 (425)
Q Consensus 239 ~~~~~~lt~~G~vy~~G~ 256 (425)
..|++++. +++||.+|-
T Consensus 207 ~~~~~~~~-~~~iyv~GG 223 (308)
T 1zgk_A 207 SGAGVCVL-HNCIYAAGG 223 (308)
T ss_dssp BSCEEEEE-TTEEEEECC
T ss_pred ccceEEEE-CCEEEEEeC
Confidence 35666555 789999984
No 60
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=80.70 E-value=32 Score=30.90 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=14.4
Q ss_pred cCCCeEEEEEcCCCEEEEEeCCC
Q 014382 78 CGADHTTAYSESCMQVYSWGWGD 100 (425)
Q Consensus 78 ~G~~~~~~lt~~~g~v~~wG~n~ 100 (425)
.+.-..+++..+ |++|+.....
T Consensus 23 l~~v~~va~d~~-G~l~v~~~~~ 44 (329)
T 3fvz_A 23 PGQVSGVALDSK-NNLVIFHRGD 44 (329)
T ss_dssp CSCEEEEEECTT-CCEEEEECTT
T ss_pred cCCceEEEECCC-CCEEEEeCCC
Confidence 344456667777 8888877554
No 61
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=80.64 E-value=28 Score=30.22 Aligned_cols=16 Identities=13% Similarity=0.202 Sum_probs=11.1
Q ss_pred eEEEEecCCCEEEecC
Q 014382 241 HTISVSSSGRLYSYGW 256 (425)
Q Consensus 241 ~~~~lt~~G~vy~~G~ 256 (425)
..++++.+|++|.-..
T Consensus 210 ~~i~~d~~G~l~v~~~ 225 (286)
T 1q7f_A 210 IGVGINSNGEILIADN 225 (286)
T ss_dssp EEEEECTTCCEEEEEC
T ss_pred cEEEECCCCCEEEEeC
Confidence 4567777888887654
No 62
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=79.67 E-value=39 Score=31.37 Aligned_cols=161 Identities=9% Similarity=0.001 Sum_probs=76.8
Q ss_pred CCCeEEEeccC-CceEE--EEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcCC--CeEEEEEcCCCE
Q 014382 18 FRPVLLISAGA-SHSVA--LLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGA--DHTTAYSESCMQ 92 (425)
Q Consensus 18 ~~~i~~i~~g~-~~~~~--l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~~~~~lt~~~g~ 92 (425)
...|..++... ....+ -..||.|.+|-..... ......+..... -...|..++... ...+.-..| |.
T Consensus 63 ~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~------~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~d-g~ 134 (437)
T 3gre_A 63 PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEII------VGEVYSSSLTYD-CSSTVTQITMIPNFDAFAVSSKD-GQ 134 (437)
T ss_dssp TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHH------TTCCCSCSEEEE-CSSCEEEEEECTTSSEEEEEETT-SE
T ss_pred CCceEEEEECCCCCCEEEEecCCceEEEeECcccc------cCcccceeeecc-CCCCEEEEEEeCCCCEEEEEeCC-CE
Confidence 35677777665 43333 3378888888632200 000011111111 123577777654 344445566 99
Q ss_pred EEEEeCC--CCCCCCCCCCCCcccceeeccc------CCCCEEEEEe----CCCEEEEEEcCCCEEEEeCCCCCccCCCC
Q 014382 93 VYSWGWG--DFGRLGHGNSSDLFTPLPIKAL------HSLRVKQIAC----GDSHCLAVTVEGEVQSWGRNQNGQLGLGT 160 (425)
Q Consensus 93 v~~wG~n--~~g~lg~~~~~~~~~p~~v~~~------~~~~i~~v~~----G~~~~~~lt~~G~vy~~G~n~~gqlg~~~ 160 (425)
|..|--. ..+++- .......+..+ ....+..+.. .....+.-+.+|.|+.|-......
T Consensus 135 i~vwd~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----- 204 (437)
T 3gre_A 135 IIVLKVNHYQQESEV-----KFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER----- 204 (437)
T ss_dssp EEEEEEEEEEETTEE-----EEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE-----
T ss_pred EEEEEeccccCCcee-----eccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee-----
Confidence 9999532 111110 00011111111 2334555542 245566667789999996533110
Q ss_pred CCCcccceeeecc-CCceEEEEEeCC--CeEEEEecCCcEEEeeC
Q 014382 161 TEDSLVPQKLQAF-EGVSIKMVAAGA--EHSVAVAEDGELYGWGW 202 (425)
Q Consensus 161 ~~~~~~p~~~~~~-~~~~i~~i~~G~--~~~~~L~~~g~vy~~G~ 202 (425)
...+... ....|..++... ...+.-..+|.|..|-.
T Consensus 205 ------~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 243 (437)
T 3gre_A 205 ------LQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDI 243 (437)
T ss_dssp ------EEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred ------eEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEc
Confidence 1111110 123566666543 34455567888999963
No 63
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=78.81 E-value=61 Score=33.11 Aligned_cols=245 Identities=13% Similarity=0.043 Sum_probs=121.2
Q ss_pred CCCeEEEeccCC--ceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcC----CCeEEEEEcCCC
Q 014382 18 FRPVLLISAGAS--HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG----ADHTTAYSESCM 91 (425)
Q Consensus 18 ~~~i~~i~~g~~--~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G----~~~~~~lt~~~g 91 (425)
...|..++.... ..+.-..||.|.+|-.... .......+... ...|..++.. ....+....| |
T Consensus 9 ~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~---------~~~~~~~l~~h-~~~V~~l~~s~~~~~~~l~s~s~D-g 77 (753)
T 3jro_A 9 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE---------THKLIDTLTGH-EGPVWRVDWAHPKFGTILASCSYD-G 77 (753)
T ss_dssp CCCEEEECCCSSSCCEEEEETTTEEEEEEEETT---------EEEEEEEECCC-SSCEEEEEECCTTSCSEEEEEETT-S
T ss_pred cceeEEEEECCCCCeEEEEECCCcEEEEecCCC---------CCccceeccCC-cCceEEEEecCCCCCCEEEEEeCC-C
Confidence 346777776533 3344457999999964210 00111112211 2357777764 3445555666 9
Q ss_pred EEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeC----CCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccc
Q 014382 92 QVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG----DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVP 167 (425)
Q Consensus 92 ~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G----~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p 167 (425)
.|+.|-.... ...+..........|..++.. ....+..+.+|.|..|-...... ...
T Consensus 78 ~I~vwd~~~~----------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~---------~~~ 138 (753)
T 3jro_A 78 KVLIWKEENG----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT---------TSP 138 (753)
T ss_dssp CEEEEEEETT----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC---------CCC
T ss_pred eEEEEECCCC----------cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC---------cce
Confidence 9999953221 001111111223467777765 34677778889999997543211 011
Q ss_pred eeeeccCCceEEEEEeCC---------------CeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeE
Q 014382 168 QKLQAFEGVSIKMVAAGA---------------EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKM 232 (425)
Q Consensus 168 ~~~~~~~~~~i~~i~~G~---------------~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i 232 (425)
..+.. ....|..++... ...+.-..+|.|+.|-.... ......+..+......|
T Consensus 139 ~~~~~-~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~----------~~~~~~~~~~~~h~~~V 207 (753)
T 3jro_A 139 IIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD----------AQTYVLESTLEGHSDWV 207 (753)
T ss_dssp EEEEC-CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETT----------TTEEEEEEEECCCSSCE
T ss_pred eEeec-CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCC----------cccceeeeeecCCCCcE
Confidence 11111 123455555433 44555667899999853221 11112222223234567
Q ss_pred EEEEecCc-----eEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcEEEEe--cCCceEEEEeCCCcEEE
Q 014382 233 VMVACGWR-----HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQIS--GGWRHTMAVTSDGKLYG 305 (425)
Q Consensus 233 ~~i~~g~~-----~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~--~G~~~~~~lt~~g~v~~ 305 (425)
..++...+ ..+.-..||.|+.|-.......- ........ -....|..++ ....+.+.-..+|.|++
T Consensus 208 ~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~------~~~~~~~~-~~~~~v~~l~~spdg~~l~s~s~Dg~I~v 280 (753)
T 3jro_A 208 RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPW------KKTLLKEE-KFPDVLWRASWSLSGNVLALSGGDNKVTL 280 (753)
T ss_dssp EEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCC------BCCBSSSS-CCSSCCCCEEECTTTCCEEEECSSSCEEC
T ss_pred EEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcc------eeEEeccC-CCCCceEEEEEcCCCCEEEEEcCCCEEEE
Confidence 77776543 45555678999988643321000 00000000 0111233333 33344455568899999
Q ss_pred eeeCC
Q 014382 306 WGWNK 310 (425)
Q Consensus 306 wG~n~ 310 (425)
|-.+.
T Consensus 281 wd~~~ 285 (753)
T 3jro_A 281 WKENL 285 (753)
T ss_dssp CBCCS
T ss_pred EecCC
Confidence 97654
No 64
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=78.77 E-value=35 Score=30.31 Aligned_cols=238 Identities=11% Similarity=0.036 Sum_probs=116.9
Q ss_pred CcEEEEEcCCCe-EEEEEc-----CCCEEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeCC-----CEEEEE
Q 014382 71 HEIVSVTCGADH-TTAYSE-----SCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD-----SHCLAV 139 (425)
Q Consensus 71 ~~i~~i~~G~~~-~~~lt~-----~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~-----~~~~~l 139 (425)
..|..++..... .++++- | |.|+.|-..... ..+. ........|..++... ...+.-
T Consensus 19 ~~v~~~~~~p~~~~l~~~~s~~~~d-~~v~iw~~~~~~----------~~~~-~~~~~~~~v~~~~~~~~~~~~~~l~~~ 86 (357)
T 3i2n_A 19 YTVFDCKWVPCSAKFVTMGNFARGT-GVIQLYEIQHGD----------LKLL-REIEKAKPIKCGTFGATSLQQRYLATG 86 (357)
T ss_dssp SCEEEEEECTTSSEEEEEEC--CCC-EEEEEEEECSSS----------EEEE-EEEEESSCEEEEECTTCCTTTCCEEEE
T ss_pred CceEEEEEcCCCceEEEecCccCCC-cEEEEEeCCCCc----------ccce-eeecccCcEEEEEEcCCCCCCceEEEe
Confidence 368888776543 333333 6 899999533210 0111 1111234677777765 445556
Q ss_pred EcCCCEEEEeCCCCCccCCCCCCCcccceeeeccCCceEEEEE--------eCCCeEEEEecCCcEEEeeCCCCCCCCCC
Q 014382 140 TVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVA--------AGAEHSVAVAEDGELYGWGWGRYGNLGLG 211 (425)
Q Consensus 140 t~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~--------~G~~~~~~L~~~g~vy~~G~n~~gqlg~~ 211 (425)
..+|.|..|-.....+ ....+. .....|..+. ......+.-..+|.|..|-......
T Consensus 87 ~~dg~i~iwd~~~~~~----------~~~~~~-~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~---- 151 (357)
T 3i2n_A 87 DFGGNLHIWNLEAPEM----------PVYSVK-GHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD---- 151 (357)
T ss_dssp ETTSCEEEECTTSCSS----------CSEEEC-CCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS----
T ss_pred cCCCeEEEEeCCCCCc----------cEEEEE-ecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC----
Confidence 7789999996543210 001111 1123455552 2233555566789999996433110
Q ss_pred CCCCCcceeeeeeee-cCCCeEEEEE------ecCceEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcE
Q 014382 212 DRNDRLIPEKVATVD-LQREKMVMVA------CGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFI 284 (425)
Q Consensus 212 ~~~~~~~p~~v~~~~-~~~~~i~~i~------~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i 284 (425)
....+.... .....+..++ ......++-..+|.|+.|-..... +..... ....|
T Consensus 152 ------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------------~~~~~~-~~~~v 212 (357)
T 3i2n_A 152 ------PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA------------LRWETN-IKNGV 212 (357)
T ss_dssp ------CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE------------EEEEEE-CSSCE
T ss_pred ------cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc------------eeeecC-CCCce
Confidence 001111000 0022455555 233455555678888888643211 111111 12336
Q ss_pred EEEecC-----CceEEEEeCCCcEEEeeeCCCCCcccCCCCCcccceEeecCCCCcEEEEEcCCCe---eEEEeCCCCEE
Q 014382 285 SQISGG-----WRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRH---TLAVTERQNVF 356 (425)
Q Consensus 285 ~~i~~G-----~~~~~~lt~~g~v~~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~---~~~l~~~g~vy 356 (425)
..++.. ....++-..+|.|+.|-......+ ........ ......|..++...+. .+.-..||.|+
T Consensus 213 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 285 (357)
T 3i2n_A 213 CSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT------KGFASVSE-KAHKSTVWQVRHLPQNRELFLTAGGAGGLH 285 (357)
T ss_dssp EEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT------TEEEEEEE-ECCSSCEEEEEEETTEEEEEEEEETTSEEE
T ss_pred EEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc------cceeeecc-CCCcCCEEEEEECCCCCcEEEEEeCCCcEE
Confidence 666554 345555678899999865432111 00000111 1233467777665443 33445889999
Q ss_pred EeeCC
Q 014382 357 SWGRG 361 (425)
Q Consensus 357 ~wG~n 361 (425)
.|=..
T Consensus 286 iwd~~ 290 (357)
T 3i2n_A 286 LWKYE 290 (357)
T ss_dssp EEEEE
T ss_pred EeecC
Confidence 99654
No 65
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=77.95 E-value=41 Score=30.58 Aligned_cols=119 Identities=15% Similarity=0.213 Sum_probs=62.1
Q ss_pred CcEEEEEcCCCeEEEEEcCCCEEEEEeCCCCCCCCCCCCCCccc-ceeecccCCCCEEEEEeCC---------CEEEEEE
Q 014382 71 HEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFT-PLPIKALHSLRVKQIACGD---------SHCLAVT 140 (425)
Q Consensus 71 ~~i~~i~~G~~~~~~lt~~~g~v~~wG~n~~g~lg~~~~~~~~~-p~~v~~~~~~~i~~v~~G~---------~~~~~lt 140 (425)
..|..++......+.-..| |.|+.|-...... ..... ...+. .....|..++... .+.+...
T Consensus 17 ~~i~~~~~~~~~l~s~~~d-g~i~iw~~~~~~~------~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l~s~~ 88 (397)
T 1sq9_A 17 ADIFSVSACNSFTVSCSGD-GYLKVWDNKLLDN------ENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVATTS 88 (397)
T ss_dssp SCEEEEEECSSEEEEEETT-SEEEEEESBCCTT------CCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred cCeEEEEecCCeEEEEcCC-CEEEEEECCCccc------ccCCCcceEEe-cCCCcEEEEEEecccccCCccccEEEEEc
Confidence 3688888777666666677 9999996443210 00111 11111 1233566665543 3455557
Q ss_pred cCCCEEEEeCCCCCccCCCCCCCcccceeeeccC----CceEEEEEeC------CCe-EEEEecCCcEEEeeCC
Q 014382 141 VEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFE----GVSIKMVAAG------AEH-SVAVAEDGELYGWGWG 203 (425)
Q Consensus 141 ~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~----~~~i~~i~~G------~~~-~~~L~~~g~vy~~G~n 203 (425)
.+|.|+.|-...... ........+.... ...|..++.. ..+ .+.-..+|.|+.|-..
T Consensus 89 ~dg~i~iw~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 156 (397)
T 1sq9_A 89 FSGDLLFYRITREDE------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFH 156 (397)
T ss_dssp TTSCEEEEEEEECTT------TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEE
T ss_pred CCCCEEEEEccCCcc------cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCC
Confidence 789999996433111 0000011222221 2356666544 344 5555688999999643
No 66
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=77.94 E-value=24 Score=27.88 Aligned_cols=108 Identities=10% Similarity=0.133 Sum_probs=60.7
Q ss_pred CCCEEEEEeCC-CEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeeccCCceEEEEEeC-CCeEEEEecCCcEEEe
Q 014382 123 SLRVKQIACGD-SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG-AEHSVAVAEDGELYGW 200 (425)
Q Consensus 123 ~~~i~~v~~G~-~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G-~~~~~~L~~~g~vy~~ 200 (425)
....+++.|-. .+.+-+..||.|-.-..... . ..--.+.... ..++.|.|- ..+.+++..+|+||.-
T Consensus 29 ~~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~~~---------~-~s~lei~sv~-~G~V~L~g~~sg~yL~mn~~G~l~Gs 97 (142)
T 3p6j_A 29 GNGEVLLKSTETGQYLRINPDGTVDGTRDRSD---------T-HIQFQISPEG-NGEVLLKSTETGQYLRINPDGTVDGT 97 (142)
T ss_dssp STTCEEEEETTTCCEEEECTTSBEEEECCTTC---------G-GGCEEEEEEE-TTEEEEEETTTTEEEEECTTSBEEEE
T ss_pred cCcEEEEEEeCCCEEEEECCCCCEeeecCCCC---------C-ceEEEEEEcc-CCEEEEEEecCCEEEeECCCCCEeec
Confidence 45788888876 67778888999986533211 1 1111121111 236777765 5778999999999964
Q ss_pred eCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEecCceEEEEecCCCEEE
Q 014382 201 GWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYS 253 (425)
Q Consensus 201 G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~g~~~~~~lt~~G~vy~ 253 (425)
-. ........++........-+..+..| ..++++.+|++|.
T Consensus 98 ~~----------~t~ecsflEi~~en~y~v~i~g~~sg--~YLamnk~Grlyg 138 (142)
T 3p6j_A 98 RD----------RSDTHIQFQISPEGNGEVLLKSTETG--QYLRINPDGTVDG 138 (142)
T ss_dssp CC----------TTCGGGCEEEEECSTTCEEEEETTTC--CEEEECTTSBEEE
T ss_pred cc----------CCCCceEEEEEeecCcEEEEEEecCC--EEEEECCCcCCcc
Confidence 21 11122233332222111222223333 4889999999996
No 67
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=77.56 E-value=47 Score=31.05 Aligned_cols=200 Identities=15% Similarity=0.131 Sum_probs=95.5
Q ss_pred eEEEEEcCCCEEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeC---CCEEEEEEcCCCEEEEeCCCCCccCC
Q 014382 82 HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG---DSHCLAVTVEGEVQSWGRNQNGQLGL 158 (425)
Q Consensus 82 ~~~~lt~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G---~~~~~~lt~~G~vy~~G~n~~gqlg~ 158 (425)
..+.-..+ |.|..|--+...... ....+..........|..|+.. ....+....+|.|+.|-......
T Consensus 196 ~l~s~~~d-g~i~vwd~~~~~~~~-----~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~--- 266 (430)
T 2xyi_A 196 YLLSASDD-HTICLWDINATPKEH-----RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT--- 266 (430)
T ss_dssp EEEEECTT-SCEEEEETTSCCBGG-----GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS---
T ss_pred eEEEEeCC-CeEEEEeCCCCCCCC-----ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC---
Confidence 33334455 999999755422110 0111111111123357777764 34555667899999997543210
Q ss_pred CCCCCcccceeeeccCCceEEEEEeCCC---eEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEE
Q 014382 159 GTTEDSLVPQKLQAFEGVSIKMVAAGAE---HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMV 235 (425)
Q Consensus 159 ~~~~~~~~p~~~~~~~~~~i~~i~~G~~---~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i 235 (425)
..+..........|..++.... ..+.-..+|.|..|-....++ .+..+......|..+
T Consensus 267 ------~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-------------~~~~~~~h~~~v~~i 327 (430)
T 2xyi_A 267 ------SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-------------KLHSFESHKDEIFQV 327 (430)
T ss_dssp ------SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-------------CSEEEECCSSCEEEE
T ss_pred ------CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-------------CeEEeecCCCCEEEE
Confidence 0111111112235666665432 244456789999997543211 111122223466666
Q ss_pred EecCc---eEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeecccc--CCcEEEEecCCc---eEEEEeCCCcEEEee
Q 014382 236 ACGWR---HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALR--ESFISQISGGWR---HTMAVTSDGKLYGWG 307 (425)
Q Consensus 236 ~~g~~---~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~--~~~i~~i~~G~~---~~~~lt~~g~v~~wG 307 (425)
+-..+ ..+.-..+|.|..|-....+..-.........|..+.... ...|..++...+ ..+....+|.|.+|-
T Consensus 328 ~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 328 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp EECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred EECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence 65433 3445557888888865432211000000000112222221 234666665433 444566788888886
Q ss_pred eC
Q 014382 308 WN 309 (425)
Q Consensus 308 ~n 309 (425)
..
T Consensus 408 ~~ 409 (430)
T 2xyi_A 408 MA 409 (430)
T ss_dssp EC
T ss_pred cc
Confidence 54
No 68
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=77.09 E-value=43 Score=30.38 Aligned_cols=207 Identities=9% Similarity=0.067 Sum_probs=102.0
Q ss_pred CCcEEEEEcCC---CeEEEEEcCCCEEEEEeCCCCCCCCCCCCCCcccceeec-------ccCCCCEEEEEeC---CCEE
Q 014382 70 GHEIVSVTCGA---DHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIK-------ALHSLRVKQIACG---DSHC 136 (425)
Q Consensus 70 ~~~i~~i~~G~---~~~~~lt~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~-------~~~~~~i~~v~~G---~~~~ 136 (425)
...|..++... ...+.-..| |.|..|-........ ........ ......|..++.. ....
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~~d-g~i~iw~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 115 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGGSD-GVIVLYDLENSSRQS------YYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF 115 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEETT-SCEEEEECCCCSSSS------CEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCE
T ss_pred CCcEEEEEEecCCCCEEEEEcCC-CeEEEEECCCCcccc------eEeccccccccccccccCCCcEEEEEEccCCCcEE
Confidence 34688887754 334444456 999999644322111 11100000 0123467777763 3466
Q ss_pred EEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeeccCCceEEEEEeCC-----CeEEEEecCCcEEEeeCCCCCCCCCC
Q 014382 137 LAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA-----EHSVAVAEDGELYGWGWGRYGNLGLG 211 (425)
Q Consensus 137 ~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G~-----~~~~~L~~~g~vy~~G~n~~gqlg~~ 211 (425)
+....+|.|..|-..... ....+. . ...+..+.... ...++-..+|.|+.|-.....
T Consensus 116 ~s~~~d~~i~iwd~~~~~-----------~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~----- 177 (408)
T 4a11_B 116 TSSSFDKTLKVWDTNTLQ-----------TADVFN-F-EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS----- 177 (408)
T ss_dssp EEEETTSEEEEEETTTTE-----------EEEEEE-C-SSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC-----
T ss_pred EEEeCCCeEEEeeCCCCc-----------cceecc-C-CCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc-----
Confidence 667779999999653311 011111 1 12344443332 245566788999999643211
Q ss_pred CCCCCcceeeeeeeecCCCeEEEEEecCce---EEEEecCCCEEEecCCCCCcC-C---CCCCCCcccceeeccccCCcE
Q 014382 212 DRNDRLIPEKVATVDLQREKMVMVACGWRH---TISVSSSGRLYSYGWSKYGQL-G---HGDFKDHLVPCQLEALRESFI 284 (425)
Q Consensus 212 ~~~~~~~p~~v~~~~~~~~~i~~i~~g~~~---~~~lt~~G~vy~~G~n~~gql-g---~~~~~~~~~p~~v~~~~~~~i 284 (425)
.+..+......|..++...+. .+.-..+|.|+.|-....... - .........+..........|
T Consensus 178 ---------~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 248 (408)
T 4a11_B 178 ---------CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKV 248 (408)
T ss_dssp ---------CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCE
T ss_pred ---------eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCce
Confidence 111112223456666654432 445568899999865432211 0 000000000000001122346
Q ss_pred EEEecC--CceEEEEeCCCcEEEeeeCC
Q 014382 285 SQISGG--WRHTMAVTSDGKLYGWGWNK 310 (425)
Q Consensus 285 ~~i~~G--~~~~~~lt~~g~v~~wG~n~ 310 (425)
..++.. ..+.+....+|.|..|-...
T Consensus 249 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 249 NGLCFTSDGLHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred eEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence 666553 33556667899999997554
No 69
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=77.01 E-value=68 Score=32.66 Aligned_cols=231 Identities=13% Similarity=0.089 Sum_probs=113.2
Q ss_pred CCeEEEeccCCc--eEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcC--CCeEEEEEcCCCEEE
Q 014382 19 RPVLLISAGASH--SVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG--ADHTTAYSESCMQVY 94 (425)
Q Consensus 19 ~~i~~i~~g~~~--~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~~~~~lt~~~g~v~ 94 (425)
.+|..++..... .++-..||.|.+|-.... + ....+... ...|..++.. ....+....+ |.|.
T Consensus 14 ~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~-~----------~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d-g~i~ 80 (814)
T 3mkq_A 14 DRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ-V----------EVRSIQVT-ETPVRAGKFIARKNWIIVGSDD-FRIR 80 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTT-E----------EEEEEECC-SSCEEEEEEEGGGTEEEEEETT-SEEE
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEECCCC-c----------eEEEEecC-CCcEEEEEEeCCCCEEEEEeCC-CeEE
Confidence 456666665433 333446889998964321 1 11122211 1245555543 3445555666 9999
Q ss_pred EEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeCC--CEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeec
Q 014382 95 SWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQA 172 (425)
Q Consensus 95 ~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~--~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~ 172 (425)
+|-...... ...+. .....|..++... .+.+.-+.+|.|..|-..... .....+.
T Consensus 81 vw~~~~~~~-----------~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~----------~~~~~~~- 137 (814)
T 3mkq_A 81 VFNYNTGEK-----------VVDFE-AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW----------ALEQTFE- 137 (814)
T ss_dssp EEETTTCCE-----------EEEEE-CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS----------EEEEEEE-
T ss_pred EEECCCCcE-----------EEEEe-cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc----------eEEEEEc-
Confidence 996432211 11111 1233566666553 345666778999999643210 0011111
Q ss_pred cCCceEEEEEeCC---CeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEe----cCceEEEE
Q 014382 173 FEGVSIKMVAAGA---EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVAC----GWRHTISV 245 (425)
Q Consensus 173 ~~~~~i~~i~~G~---~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~----g~~~~~~l 245 (425)
.....|..++... ...+.-..+|.|+.|-..... ....+.... ...+..++. .....++-
T Consensus 138 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~-----------~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~ 204 (814)
T 3mkq_A 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-----------PNFTLTTGQ--ERGVNYVDYYPLPDKPYMITA 204 (814)
T ss_dssp CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS-----------CSEEEECCC--TTCCCEEEECCSTTCCEEEEE
T ss_pred CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------ceeEEecCC--CCCEEEEEEEECCCCCEEEEE
Confidence 1223566666543 345555678999999642210 011111111 123333333 33455555
Q ss_pred ecCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcEEEEecCC--ceEEEEeCCCcEEEeeeCC
Q 014382 246 SSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGW--RHTMAVTSDGKLYGWGWNK 310 (425)
Q Consensus 246 t~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~~~~~lt~~g~v~~wG~n~ 310 (425)
..+|.|+.|-.... .....+.. ....|..++... ...+.-..+|.|+.|-...
T Consensus 205 ~~dg~i~~~d~~~~-----------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 205 SDDLTIKIWDYQTK-----------SCVATLEG-HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259 (814)
T ss_dssp CTTSEEEEEETTTT-----------EEEEEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred eCCCEEEEEECCCC-----------cEEEEEcC-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 67888888853211 11111111 123365555433 3455566789999996543
No 70
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=75.74 E-value=37 Score=28.95 Aligned_cols=15 Identities=33% Similarity=0.333 Sum_probs=10.6
Q ss_pred eEEEEeCCCcEEEee
Q 014382 293 HTMAVTSDGKLYGWG 307 (425)
Q Consensus 293 ~~~~lt~~g~v~~wG 307 (425)
+.++++.+|++|+-.
T Consensus 237 ~~i~~~~~g~l~v~~ 251 (270)
T 1rwi_B 237 LAVAVDSDRTVYVAD 251 (270)
T ss_dssp EEEEECTTCCEEEEE
T ss_pred eeEEECCCCCEEEEE
Confidence 556777788888754
No 71
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=75.36 E-value=42 Score=29.43 Aligned_cols=269 Identities=14% Similarity=0.159 Sum_probs=125.8
Q ss_pred CCeEEEeccCCce--EEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcCCC--eEEEEEcCCCEEE
Q 014382 19 RPVLLISAGASHS--VALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD--HTTAYSESCMQVY 94 (425)
Q Consensus 19 ~~i~~i~~g~~~~--~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~--~~~~lt~~~g~v~ 94 (425)
..|..++...... +.-..||.+.+|..... + ....+... ...|..++.... ..+.-..| |.|.
T Consensus 24 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~-~----------~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~d-~~i~ 90 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-K----------FEKTISGH-KLGISDVAWSSDSNLLVSASDD-KTLK 90 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTC-C----------EEEEECCC-SSCEEEEEECTTSSEEEEEETT-SEEE
T ss_pred CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc-c----------cchhhccC-CCceEEEEEcCCCCEEEEECCC-CEEE
Confidence 4677776654433 33347888888875321 1 11112211 235666665543 33344466 9999
Q ss_pred EEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeC--CCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeec
Q 014382 95 SWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQA 172 (425)
Q Consensus 95 ~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G--~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~ 172 (425)
.|-...... ...+.. ....|..+... ....+.-..+|.|..|-...... ...+.
T Consensus 91 vwd~~~~~~-----------~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----------~~~~~- 146 (312)
T 4ery_A 91 IWDVSSGKC-----------LKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC-----------LKTLP- 146 (312)
T ss_dssp EEETTTCCE-----------EEEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE-----------EEEEC-
T ss_pred EEECCCCcE-----------EEEEcC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE-----------EEEec-
Confidence 995332110 011111 12345555443 34555667789999996432110 01111
Q ss_pred cCCceEEEEEeCC--CeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEe--cCceEEEEecC
Q 014382 173 FEGVSIKMVAAGA--EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVAC--GWRHTISVSSS 248 (425)
Q Consensus 173 ~~~~~i~~i~~G~--~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~--g~~~~~~lt~~ 248 (425)
.....|..++... ...+.-..+|.|..|-..... ....+ .......+..++. ...+.++-+.+
T Consensus 147 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-----------~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~d 213 (312)
T 4ery_A 147 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ-----------CLKTL--IDDDNPPVSFVKFSPNGKYILAATLD 213 (312)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----------EEEEE--CCSSCCCEEEEEECTTSSEEEEEETT
T ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----------eeeEE--eccCCCceEEEEECCCCCEEEEEcCC
Confidence 1123455555433 344455678888888632210 00111 0111223444433 33455566778
Q ss_pred CCEEEecCCCCCcCCCCCCCCcccceeeccccC--C-cEEEEe-cCCceEEEEeCCCcEEEeeeCCCCCcccCCCCCccc
Q 014382 249 GRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRE--S-FISQIS-GGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCS 324 (425)
Q Consensus 249 G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~--~-~i~~i~-~G~~~~~~lt~~g~v~~wG~n~~gqLG~~~~~~~~~ 324 (425)
|.|..|-......+ ..+..... . ...... .+....+.-..+|.|+.|-.....
T Consensus 214 ~~i~iwd~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~------------ 270 (312)
T 4ery_A 214 NTLKLWDYSKGKCL-----------KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE------------ 270 (312)
T ss_dssp TEEEEEETTTTEEE-----------EEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCC------------
T ss_pred CeEEEEECCCCcEE-----------EEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCch------------
Confidence 88888854321111 01100000 0 011111 223344444678999999643311
Q ss_pred ceEeecCCCCcEEEEEcCCCeeEEEe----CCCCEEEeeC
Q 014382 325 PVQVKFPLDQKVVQISCGWRHTLAVT----ERQNVFSWGR 360 (425)
Q Consensus 325 p~~i~~~~~~~i~~i~~G~~~~~~l~----~~g~vy~wG~ 360 (425)
....-......|..++.-....++.+ .|+.|..|=.
T Consensus 271 ~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 271 IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp EEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred hhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 11111122345777776554443332 4788888854
No 72
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=74.99 E-value=53 Score=30.43 Aligned_cols=117 Identities=10% Similarity=0.012 Sum_probs=58.4
Q ss_pred CCCeEEEeccCC--ceEEEEcCCeEEEEeCC--CCCccCCCCCCCccCCeeecCC------CCCcEEEEEcC----CCeE
Q 014382 18 FRPVLLISAGAS--HSVALLSGNIVCSWGRG--EDGQLGHGDAEDRLSPTQLSAL------DGHEIVSVTCG----ADHT 83 (425)
Q Consensus 18 ~~~i~~i~~g~~--~~~~l~~~g~v~~wG~n--~~gqLG~~~~~~~~~p~~v~~~------~~~~i~~i~~G----~~~~ 83 (425)
...|..++.... ..+.-..||.|.+|--. ..+++- .......+..+ ....+..+..- ....
T Consensus 111 ~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (437)
T 3gre_A 111 SSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEV-----KFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLL 185 (437)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEE-----EEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEE
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCcee-----eccccceeEEEEccCcccccCceEEEEEEcCCCCEE
Confidence 456777777543 34445578999999542 111110 00000111100 22345554421 3344
Q ss_pred EEEEcCCCEEEEEeCCCCCCCCCCCCCCcccceeeccc-CCCCEEEEEeCC--CEEEEEEcCCCEEEEeCC
Q 014382 84 TAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKAL-HSLRVKQIACGD--SHCLAVTVEGEVQSWGRN 151 (425)
Q Consensus 84 ~~lt~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~-~~~~i~~v~~G~--~~~~~lt~~G~vy~~G~n 151 (425)
+.-..| |.|+.|-....- ....+... ....|..++... .+.+.-+.+|.|..|-..
T Consensus 186 ~~~~~d-~~i~iwd~~~~~-----------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 244 (437)
T 3gre_A 186 VALTNL-SRVIIFDIRTLE-----------RLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIR 244 (437)
T ss_dssp EEEETT-SEEEEEETTTCC-----------EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred EEEeCC-CeEEEEeCCCCe-----------eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 555566 999999533210 01111110 123677777643 455566788999999653
No 73
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=74.77 E-value=41 Score=31.49 Aligned_cols=108 Identities=7% Similarity=0.098 Sum_probs=63.4
Q ss_pred CCeeecCCCCCcEEEEEcCCCeEEEEEcCCCEEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeCCCEEEEEE
Q 014382 61 SPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVT 140 (425)
Q Consensus 61 ~p~~v~~~~~~~i~~i~~G~~~~~~lt~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~~lt 140 (425)
.|.....+.. |.++++ ....+++.++ +.|..|=-....+ ......+ ...+.++.+-....++++
T Consensus 80 ~~~~~~~lp~--V~~l~f-d~~~L~v~~~-~~l~v~dv~sl~~-----------~~~~~~~-~~~v~~i~~~~p~~av~~ 143 (388)
T 1xip_A 80 TFKWEKEIPD--VIFVCF-HGDQVLVSTR-NALYSLDLEELSE-----------FRTVTSF-EKPVFQLKNVNNTLVILN 143 (388)
T ss_dssp CCSEEEECTT--EEEEEE-ETTEEEEEES-SEEEEEESSSTTC-----------EEEEEEC-SSCEEEEEECSSEEEEEE
T ss_pred cceEEeeCCC--eeEEEE-CCCEEEEEcC-CcEEEEEchhhhc-----------cCcccee-ecceeeEEecCCCEEEEE
Confidence 4533333453 999999 7777777777 9999995433321 1111111 224666666665688889
Q ss_pred cCCCEEEEeCCCCCccCCCCCCCcccceeeeccCCceEEEEEeCCCeEEEEecCCcEEEe
Q 014382 141 VEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGW 200 (425)
Q Consensus 141 ~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~L~~~g~vy~~ 200 (425)
++|.|+.|--... ++ ..+. ..|..++-...-.++...||++..|
T Consensus 144 ~dG~L~v~dl~~~-~~-----------~~~~----~~Vs~v~WSpkG~~vg~~dg~i~~~ 187 (388)
T 1xip_A 144 SVNDLSALDLRTK-ST-----------KQLA----QNVTSFDVTNSQLAVLLKDRSFQSF 187 (388)
T ss_dssp TTSEEEEEETTTC-CE-----------EEEE----ESEEEEEECSSEEEEEETTSCEEEE
T ss_pred CCCCEEEEEccCC-cc-----------cccc----CCceEEEEcCCceEEEEcCCcEEEE
Confidence 9999999954321 11 0111 2466666666555556666766655
No 74
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=74.12 E-value=47 Score=29.46 Aligned_cols=16 Identities=13% Similarity=0.173 Sum_probs=12.0
Q ss_pred ceEEEEecCCCEEEecC
Q 014382 240 RHTISVSSSGRLYSYGW 256 (425)
Q Consensus 240 ~~~~~lt~~G~vy~~G~ 256 (425)
.|+++.. +++||.+|-
T Consensus 91 ~~~~~~~-~~~lyv~GG 106 (315)
T 4asc_A 91 LFGLGEA-LNSIYVVGG 106 (315)
T ss_dssp SCEEEEE-TTEEEEECC
T ss_pred ceeEEEE-CCEEEEEeC
Confidence 4666555 789999995
No 75
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=73.86 E-value=66 Score=31.04 Aligned_cols=219 Identities=20% Similarity=0.236 Sum_probs=105.5
Q ss_pred cEEEEEcC--CCeEEEEEcCCCEEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeCC--CEEEEEEcCCCEEE
Q 014382 72 EIVSVTCG--ADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--SHCLAVTVEGEVQS 147 (425)
Q Consensus 72 ~i~~i~~G--~~~~~~lt~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~--~~~~~lt~~G~vy~ 147 (425)
.|..++.. ..+.+.-.++ |.|..|-.+ +++ ...+. .....|..++... .+.+.-..++.|+.
T Consensus 346 ~v~~~~~s~~g~~l~~~~~d-g~v~~~~~~--~~~----------~~~~~-~~~~~v~~~~~s~dg~~l~~~~~d~~v~~ 411 (577)
T 2ymu_A 346 SVWGVAFSPDGQTIASASDD-KTVKLWNRN--GQL----------LQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKL 411 (577)
T ss_dssp CEEEEEECTTSSEEEEEETT-SEEEEEETT--CCE----------EEEEE-CCSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred CEEEEEECCCCCEEEEEeCC-CEEEEEcCC--CCE----------EEEec-CCCCCeEEEEECCCCCEEEEEeCCCEEEE
Confidence 46666544 3344445566 899998522 111 11111 1133566666543 34555567888999
Q ss_pred EeCCCCCccCCCCCCCcccceeeeccCCceEEEEEeCC--CeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeee
Q 014382 148 WGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA--EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATV 225 (425)
Q Consensus 148 ~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G~--~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~ 225 (425)
|-.+ +++ ...+.. ....|..++... ...+.-..|+.|..|-.+ + ..+..+
T Consensus 412 ~~~~--~~~----------~~~~~~-~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~--~-------------~~~~~~ 463 (577)
T 2ymu_A 412 WNRN--GQL----------LQTLTG-HSSSVWGVAFSPDDQTIASASDDKTVKLWNRN--G-------------QLLQTL 463 (577)
T ss_dssp ECTT--CCE----------EEEEEC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETT--S-------------CEEEEE
T ss_pred EeCC--CCE----------EEEecC-CCCCeEEEEECCCCCEEEEEcCCCEEEEEECC--C-------------CEEEEE
Confidence 8432 111 111111 123465555443 333444578888888421 1 112222
Q ss_pred ecCCCeEEEEEecCc--eEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcEEEEecCC--ceEEEEeCCC
Q 014382 226 DLQREKMVMVACGWR--HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGW--RHTMAVTSDG 301 (425)
Q Consensus 226 ~~~~~~i~~i~~g~~--~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~~~~~lt~~g 301 (425)
......|..++...+ ..+.-..|+.|+.|-.. +++ ...+.. ....|..++... .+.+.-..+|
T Consensus 464 ~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~--~~~----------~~~~~~-h~~~v~~l~~s~dg~~l~s~~~dg 530 (577)
T 2ymu_A 464 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQL----------LQTLTG-HSSSVRGVAFSPDGQTIASASDDK 530 (577)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT--SCE----------EEEEEC-CSSCEEEEEECTTSSCEEEEETTS
T ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC--CCE----------EEEEeC-CCCCEEEEEEcCCCCEEEEEECcC
Confidence 222446666665443 33334577888888521 111 111111 123366665433 3444456788
Q ss_pred cEEEeeeCCCCCcccCCCCCcccceEeecCCCCcEEEEEcCCC--eeEEEeCCCCEEEe
Q 014382 302 KLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWR--HTLAVTERQNVFSW 358 (425)
Q Consensus 302 ~v~~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~--~~~~l~~~g~vy~w 358 (425)
.|..|-. .++ +...-......|..++...+ ..+.-..|+.|..|
T Consensus 531 ~v~lwd~--~~~-----------~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~W 576 (577)
T 2ymu_A 531 TVKLWNR--NGQ-----------LLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576 (577)
T ss_dssp EEEEECT--TSC-----------EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred EEEEEeC--CCC-----------EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEe
Confidence 9999842 121 11111112345666654432 33334467888877
No 76
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=73.43 E-value=40 Score=29.87 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=12.2
Q ss_pred CceEEEEecCCCEEEecC
Q 014382 239 WRHTISVSSSGRLYSYGW 256 (425)
Q Consensus 239 ~~~~~~lt~~G~vy~~G~ 256 (425)
..|++++. +++||.+|-
T Consensus 160 ~~~~~~~~-~~~iyv~GG 176 (308)
T 1zgk_A 160 IGVGVAVL-NRLLYAVGG 176 (308)
T ss_dssp BSCEEEEE-TTEEEEECC
T ss_pred cceEEEEE-CCEEEEEeC
Confidence 34666555 789999985
No 77
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=73.24 E-value=56 Score=29.94 Aligned_cols=154 Identities=14% Similarity=0.117 Sum_probs=79.0
Q ss_pred EeccCCceEEE---EcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcCC---CeEEEEEcCCCEEEEEe
Q 014382 24 ISAGASHSVAL---LSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGA---DHTTAYSESCMQVYSWG 97 (425)
Q Consensus 24 i~~g~~~~~~l---~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~---~~~~~lt~~~g~v~~wG 97 (425)
+++.....+++ ..||.|++|-....+.+.. ....+... ...|..++... ...+.-..| |.|..|-
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~-------~~~~~~~h-~~~V~~~~~~p~~~~~l~s~s~d-g~v~vw~ 110 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDK-------NVPLVCGH-TAPVLDIAWCPHNDNVIASGSED-CTVMVWE 110 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCT-------TCCCBCCC-SSCEEEEEECTTCTTEEEEEETT-SEEEEEE
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCC-------CCceEecC-CCCEEEEEeCCCCCCEEEEEeCC-CeEEEEE
Confidence 44555555554 3588999998655444310 00111111 23577777643 344444556 9999996
Q ss_pred CCCCCCCCCCCCCCcccceeecccCCCCEEEEEeCCC---EEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeee-cc
Q 014382 98 WGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDS---HCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQ-AF 173 (425)
Q Consensus 98 ~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~---~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~-~~ 173 (425)
....+... ....+..........|..++.... ..+.-..||.|+.|-..... ....+. ..
T Consensus 111 ~~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~ 174 (402)
T 2aq5_A 111 IPDGGLVL-----PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA-----------AVLTLGPDV 174 (402)
T ss_dssp CCTTCCSS-----CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE-----------EEEEECTTT
T ss_pred ccCCCCcc-----ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC-----------ccEEEecCC
Confidence 54432211 011111111112346777776543 45556778999999653311 011110 11
Q ss_pred CCceEEEEEeC--CCeEEEEecCCcEEEeeC
Q 014382 174 EGVSIKMVAAG--AEHSVAVAEDGELYGWGW 202 (425)
Q Consensus 174 ~~~~i~~i~~G--~~~~~~L~~~g~vy~~G~ 202 (425)
....|..++.. ....+.-..+|.|+.|-.
T Consensus 175 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 205 (402)
T 2aq5_A 175 HPDTIYSVDWSRDGALICTSCRDKRVRVIEP 205 (402)
T ss_dssp CCSCEEEEEECTTSSCEEEEETTSEEEEEET
T ss_pred CCCceEEEEECCCCCEEEEEecCCcEEEEeC
Confidence 23356666554 334455567889999863
No 78
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=72.03 E-value=34 Score=26.94 Aligned_cols=107 Identities=16% Similarity=0.229 Sum_probs=62.2
Q ss_pred CCceEEEEEeCC-CeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEec-CceEEEEecCCCE
Q 014382 174 EGVSIKMVAAGA-EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACG-WRHTISVSSSGRL 251 (425)
Q Consensus 174 ~~~~i~~i~~G~-~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~g-~~~~~~lt~~G~v 251 (425)
+....+++.|-. .+.+-+..||.|-.-.. ......--.+.... ..++.|.|- ..+.+++..+|+|
T Consensus 28 ~~~~~~~LYcr~~g~~LqI~~dG~V~Gt~~----------~~~~~s~lei~sv~---~G~V~L~g~~sg~yL~mn~~G~l 94 (142)
T 3p6j_A 28 EGNGEVLLKSTETGQYLRINPDGTVDGTRD----------RSDTHIQFQISPEG---NGEVLLKSTETGQYLRINPDGTV 94 (142)
T ss_dssp CSTTCEEEEETTTCCEEEECTTSBEEEECC----------TTCGGGCEEEEEEE---TTEEEEEETTTTEEEEECTTSBE
T ss_pred ccCcEEEEEEeCCCEEEEECCCCCEeeecC----------CCCCceEEEEEEcc---CCEEEEEEecCCEEEeECCCCCE
Confidence 345678888876 56777888999985432 11222222333322 357888875 5678899999999
Q ss_pred EEecCCCCCcCCCCCCCCcccceeecccc--CCcEEEEecCCceEEEEeCCCcEEE
Q 014382 252 YSYGWSKYGQLGHGDFKDHLVPCQLEALR--ESFISQISGGWRHTMAVTSDGKLYG 305 (425)
Q Consensus 252 y~~G~n~~gqlg~~~~~~~~~p~~v~~~~--~~~i~~i~~G~~~~~~lt~~g~v~~ 305 (425)
|.--. ..+.....++.... ...|+.+..| ..++++.+|++|.
T Consensus 95 ~Gs~~----------~t~ecsflEi~~en~y~v~i~g~~sg--~YLamnk~Grlyg 138 (142)
T 3p6j_A 95 DGTRD----------RSDTHIQFQISPEGNGEVLLKSTETG--QYLRINPDGTVDG 138 (142)
T ss_dssp EEECC----------TTCGGGCEEEEECSTTCEEEEETTTC--CEEEECTTSBEEE
T ss_pred eeccc----------CCCCceEEEEEeecCcEEEEEEecCC--EEEEECCCcCCcc
Confidence 97432 11112222222221 2223333343 4889999999985
No 79
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=71.79 E-value=52 Score=28.90 Aligned_cols=16 Identities=25% Similarity=0.206 Sum_probs=11.7
Q ss_pred CEEEEEEcCCCEEEEeC
Q 014382 134 SHCLAVTVEGEVQSWGR 150 (425)
Q Consensus 134 ~~~~~lt~~G~vy~~G~ 150 (425)
.|++++. ++++|++|-
T Consensus 101 ~~~~~~~-~~~iyv~GG 116 (302)
T 2xn4_A 101 TLGAAVL-NGLLYAVGG 116 (302)
T ss_dssp SCEEEEE-TTEEEEEEE
T ss_pred ceEEEEE-CCEEEEEcC
Confidence 5665554 789999985
No 80
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=71.53 E-value=60 Score=29.48 Aligned_cols=227 Identities=10% Similarity=0.002 Sum_probs=113.7
Q ss_pred EEEeCCCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeeccCCceEEEEEeCC-----CeEEEEecCCcEEEeeC
Q 014382 128 QIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA-----EHSVAVAEDGELYGWGW 202 (425)
Q Consensus 128 ~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G~-----~~~~~L~~~g~vy~~G~ 202 (425)
.++...++.+++|+.|++|..-.......+....- ......+...++++|+.+..-. ...+++|++|.+.-.-.
T Consensus 45 ~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G-~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l 123 (323)
T 1wp5_A 45 LEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLG-QHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTEL 123 (323)
T ss_dssp EEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCC-EEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEG
T ss_pred EEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCC-cChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEH
Confidence 34567789999999999999976554443322111 1111222223455677654332 35788899998886654
Q ss_pred CCCCCCCCCCCCCCcceeeeeeeecCCCeEEEE--EecCceEEEEecCCCEEEecCCCCCcCCCCCCCCccccee-eccc
Q 014382 203 GRYGNLGLGDRNDRLIPEKVATVDLQREKMVMV--ACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQ-LEAL 279 (425)
Q Consensus 203 n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i--~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~-v~~~ 279 (425)
.++-.... ......-.+.. +..++.+ ..+.++.+++|++|+++.+-.++-..+|.... ... +..-
T Consensus 124 ~e~~~~~r------~~G~~ai~l~e-~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~-----GV~~i~L~ 191 (323)
T 1wp5_A 124 KHYKAQRY------SKPLTGINLKN-DDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAA-----GVKGMNLK 191 (323)
T ss_dssp GGGCCSCC------SSCEECSCCCT-TCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCC-----CEECCCCC
T ss_pred HHhhhccc------cCceEEEEeCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCc-----CEEEEEeC
Confidence 33221110 00011111111 2344433 33677899999999999887665444443211 111 1111
Q ss_pred cCCcEEEEec--CCc-eEEEEeCCCcEEEeeeCCCCCcccCCCCCcccceEeecCC-CCcEEE--EEcCCCeeEEEeCCC
Q 014382 280 RESFISQISG--GWR-HTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPL-DQKVVQ--ISCGWRHTLAVTERQ 353 (425)
Q Consensus 280 ~~~~i~~i~~--G~~-~~~~lt~~g~v~~wG~n~~gqLG~~~~~~~~~p~~i~~~~-~~~i~~--i~~G~~~~~~l~~~g 353 (425)
.+..|..+.. -.. ..+++|++|...-.-...+-.-+.+.. -...+.. +.. +..+.. +..+.+..++++++|
T Consensus 192 ~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~k-Gv~~~~~--~~~~~~~l~~~~~v~~~~~i~~it~~g 268 (323)
T 1wp5_A 192 EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKR-GVVILRE--LKANPHRISGFVVAQDSDTIYLQTEKS 268 (323)
T ss_dssp TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSC-CEECSCC--CSSSCCCEEEEEEECTTCEEEEEETTS
T ss_pred CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCC-CEECeee--cCCCCceEEEEEEeCCCCeEEEEeCCC
Confidence 2344555432 122 566777777644333322211111110 0000100 111 123442 234567788999999
Q ss_pred CEEEeeCCCCCccCCCC
Q 014382 354 NVFSWGRGTNGQLGHGE 370 (425)
Q Consensus 354 ~vy~wG~n~~gqLG~g~ 370 (425)
.+.-.--++--..|...
T Consensus 269 ~~ir~~~~~i~~~~R~t 285 (323)
T 1wp5_A 269 FIETIKVGDIRFSDRYS 285 (323)
T ss_dssp CEEEEEGGGSCBCCSSS
T ss_pred eEEEEEhhhcCccCccC
Confidence 99877666655555443
No 81
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=70.61 E-value=52 Score=28.39 Aligned_cols=16 Identities=13% Similarity=0.123 Sum_probs=10.1
Q ss_pred eEEEEeCCCcEEEeee
Q 014382 293 HTMAVTSDGKLYGWGW 308 (425)
Q Consensus 293 ~~~~lt~~g~v~~wG~ 308 (425)
..++++.+|++|+-..
T Consensus 210 ~~i~~d~~G~l~v~~~ 225 (286)
T 1q7f_A 210 IGVGINSNGEILIADN 225 (286)
T ss_dssp EEEEECTTCCEEEEEC
T ss_pred cEEEECCCCCEEEEeC
Confidence 3466667777776553
No 82
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=70.53 E-value=55 Score=30.60 Aligned_cols=98 Identities=10% Similarity=0.098 Sum_probs=57.4
Q ss_pred EEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEecCceEEEEecCCCEEEecCC
Q 014382 178 IKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWS 257 (425)
Q Consensus 178 i~~i~~G~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n 257 (425)
|.+++. ....+++.+++.|..|=.....+ ...+... ...+.++.+-....++++++|.|+.|=-.
T Consensus 90 V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~-----------~~~~~~~---~~~v~~i~~~~p~~av~~~dG~L~v~dl~ 154 (388)
T 1xip_A 90 VIFVCF-HGDQVLVSTRNALYSLDLEELSE-----------FRTVTSF---EKPVFQLKNVNNTLVILNSVNDLSALDLR 154 (388)
T ss_dssp EEEEEE-ETTEEEEEESSEEEEEESSSTTC-----------EEEEEEC---SSCEEEEEECSSEEEEEETTSEEEEEETT
T ss_pred eeEEEE-CCCEEEEEcCCcEEEEEchhhhc-----------cCcccee---ecceeeEEecCCCEEEEECCCCEEEEEcc
Confidence 888888 77777777889999886433211 1111111 23456666666567888999999999532
Q ss_pred CCCcCCCCCCCCcccceeeccccCCcEEEEecCCceEEEEeCCCcEEEe
Q 014382 258 KYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGW 306 (425)
Q Consensus 258 ~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~v~~w 306 (425)
+ +++ .+ +. ..|+.|+-...-.++...+|++..|
T Consensus 155 ~-~~~---------~~--~~----~~Vs~v~WSpkG~~vg~~dg~i~~~ 187 (388)
T 1xip_A 155 T-KST---------KQ--LA----QNVTSFDVTNSQLAVLLKDRSFQSF 187 (388)
T ss_dssp T-CCE---------EE--EE----ESEEEEEECSSEEEEEETTSCEEEE
T ss_pred C-Ccc---------cc--cc----CCceEEEEcCCceEEEEcCCcEEEE
Confidence 1 111 11 11 1266666555554555566666666
No 83
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=70.11 E-value=1e+02 Score=31.50 Aligned_cols=241 Identities=11% Similarity=0.069 Sum_probs=118.0
Q ss_pred cEEEEEcCCC--eEEEEEcCCCEEEEEeCCCCCCCCCCCCCCcccceeeccc--CCCCEEEEEeC----CCEEEEEEcCC
Q 014382 72 EIVSVTCGAD--HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKAL--HSLRVKQIACG----DSHCLAVTVEG 143 (425)
Q Consensus 72 ~i~~i~~G~~--~~~~lt~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~--~~~~i~~v~~G----~~~~~~lt~~G 143 (425)
.|..++.... ..+.-..| |.|.+|-... . ....+..+ ....|..++.. ....+.-..||
T Consensus 11 ~V~~l~~s~dg~~latg~~d-g~I~vwd~~~----------~--~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg 77 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSD-KTIKIFEVEG----------E--THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 77 (753)
T ss_dssp CEEEECCCSSSCCEEEEETT-TEEEEEEEET----------T--EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS
T ss_pred eeEEEEECCCCCeEEEEECC-CcEEEEecCC----------C--CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCC
Confidence 4666665433 33333456 9999994221 0 11112111 23468888764 45667778899
Q ss_pred CEEEEeCCCCCccCCCCCCCcccceeeeccCCceEEEEEeCC----CeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcce
Q 014382 144 EVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA----EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIP 219 (425)
Q Consensus 144 ~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G~----~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p 219 (425)
.|+.|-.... ...+..........|..++... ...+.-..+|.|..|-...... ...
T Consensus 78 ~I~vwd~~~~----------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~---------~~~ 138 (753)
T 3jro_A 78 KVLIWKEENG----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT---------TSP 138 (753)
T ss_dssp CEEEEEEETT----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC---------CCC
T ss_pred eEEEEECCCC----------cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC---------cce
Confidence 9999964321 0001111111234577776553 4566667889999996433211 001
Q ss_pred eeeeeeecCCCeEEEEEec---------------CceEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcE
Q 014382 220 EKVATVDLQREKMVMVACG---------------WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFI 284 (425)
Q Consensus 220 ~~v~~~~~~~~~i~~i~~g---------------~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i 284 (425)
..+ ......|..++.. ....+.-..||.|+.|-..... ....+..........|
T Consensus 139 ~~~---~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~--------~~~~~~~~~~~h~~~V 207 (753)
T 3jro_A 139 III---DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--------QTYVLESTLEGHSDWV 207 (753)
T ss_dssp EEE---ECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT--------TEEEEEEEECCCSSCE
T ss_pred eEe---ecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc--------ccceeeeeecCCCCcE
Confidence 111 1112345555543 3455566678988888432210 0011111111123347
Q ss_pred EEEecCC-----ceEEEEeCCCcEEEeeeCCCCCcccCCCCCcccceEeecCCCCcEEEEE--cCCCeeEEEeCCCCEEE
Q 014382 285 SQISGGW-----RHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQIS--CGWRHTLAVTERQNVFS 357 (425)
Q Consensus 285 ~~i~~G~-----~~~~~lt~~g~v~~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~--~G~~~~~~l~~~g~vy~ 357 (425)
..++... ...+.-..+|.|..|-.......- .............|..++ ......+.-..||.|+.
T Consensus 208 ~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~-------~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~v 280 (753)
T 3jro_A 208 RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPW-------KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL 280 (753)
T ss_dssp EEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCC-------BCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEEC
T ss_pred EEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcc-------eeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEE
Confidence 7776553 344555688999999665421100 000000000112333333 33334444458899999
Q ss_pred eeCCC
Q 014382 358 WGRGT 362 (425)
Q Consensus 358 wG~n~ 362 (425)
|=.+.
T Consensus 281 wd~~~ 285 (753)
T 3jro_A 281 WKENL 285 (753)
T ss_dssp CBCCS
T ss_pred EecCC
Confidence 97653
No 84
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=70.09 E-value=54 Score=28.44 Aligned_cols=141 Identities=18% Similarity=0.182 Sum_probs=69.3
Q ss_pred CCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcCCCe--EEEEEcCCCEEEEEeCCCCCCCC
Q 014382 28 ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADH--TTAYSESCMQVYSWGWGDFGRLG 105 (425)
Q Consensus 28 ~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~--~~~lt~~~g~v~~wG~n~~g~lg 105 (425)
....+++-.|+.|++|=... |++ ........ ....|..|+..... .+.-..| |.|..|-....
T Consensus 35 ~~~~lAvg~D~tV~iWd~~t-g~~--------~~~~~~~~-~~~~V~~v~~~~~~~~l~sgs~D-g~v~iw~~~~~---- 99 (318)
T 4ggc_A 35 SGNVLAVALDNSVYLWSASS-GDI--------LQLLQMEQ-PGEYISSVAWIKEGNYLAVGTSS-AEVQLWDVQQQ---- 99 (318)
T ss_dssp TTSEEEEEETTEEEEEETTT-CCE--------EEEEECCS-TTCCEEEEEECTTSSEEEEEETT-SEEEEEETTTT----
T ss_pred CCCEEEEEeCCEEEEEECCC-CCE--------EEEEEecC-CCCeEEEEEECCCCCEEEEEECC-CcEEEeecCCc----
Confidence 34467777899999996432 211 00011111 12347777665443 3334466 99999953321
Q ss_pred CCCCCCcccceeecccCCCCEEEEEeCCCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeeccCCceEEEE--Ee
Q 014382 106 HGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMV--AA 183 (425)
Q Consensus 106 ~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i--~~ 183 (425)
.+..........+..++......+.-..++.+..|-...... ........ ...+..+ ..
T Consensus 100 --------~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~---------~~~~~~~~--~~~~~~~~~~~ 160 (318)
T 4ggc_A 100 --------KRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH---------HVATLSGH--SQEVCGLRWAP 160 (318)
T ss_dssp --------EEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC---------EEEEEECC--SSCEEEEEECT
T ss_pred --------eeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCce---------eEEEEcCc--cCceEEEEEcC
Confidence 111111112235566666666666666777777775432111 00011111 1123333 33
Q ss_pred CCCeEEEEecCCcEEEeeC
Q 014382 184 GAEHSVAVAEDGELYGWGW 202 (425)
Q Consensus 184 G~~~~~~L~~~g~vy~~G~ 202 (425)
-..+.+.-..||.|..|-.
T Consensus 161 ~~~~l~s~~~d~~i~iwd~ 179 (318)
T 4ggc_A 161 DGRHLASGGNDNLVNVWPS 179 (318)
T ss_dssp TSSEEEEEETTSCEEEEES
T ss_pred CCCEEEEEecCcceeEEEC
Confidence 3345556667899999853
No 85
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=68.11 E-value=64 Score=28.52 Aligned_cols=17 Identities=12% Similarity=0.255 Sum_probs=11.6
Q ss_pred eeEEEeCCCC-EEEeeCC
Q 014382 345 HTLAVTERQN-VFSWGRG 361 (425)
Q Consensus 345 ~~~~l~~~g~-vy~wG~n 361 (425)
+.++++.+|+ +|.-...
T Consensus 317 ~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 317 NSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EEEEECTTSCEEEEEEEC
T ss_pred CeEEEcCCCCEEEEEEcc
Confidence 5577888887 6766543
No 86
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=68.10 E-value=1.1e+02 Score=31.10 Aligned_cols=230 Identities=10% Similarity=0.067 Sum_probs=113.0
Q ss_pred cEEEEEcCCC--eEEEEEcCCCEEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEe--CCCEEEEEEcCCCEEE
Q 014382 72 EIVSVTCGAD--HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIAC--GDSHCLAVTVEGEVQS 147 (425)
Q Consensus 72 ~i~~i~~G~~--~~~~lt~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~--G~~~~~~lt~~G~vy~ 147 (425)
.|..++.... ..++-..+ |.|..|-.... + ....+. .....|..++. .....+..+.+|.|+.
T Consensus 15 ~v~~i~~sp~~~~la~~~~~-g~v~iwd~~~~-~----------~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 81 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYS-GRVEIWNYETQ-V----------EVRSIQ-VTETPVRAGKFIARKNWIIVGSDDFRIRV 81 (814)
T ss_dssp CEEEEEECSSSSEEEEEETT-SEEEEEETTTT-E----------EEEEEE-CCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred ceEEEEECCCCCEEEEEeCC-CEEEEEECCCC-c----------eEEEEe-cCCCcEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 4666665533 33444456 99999953221 0 111111 11234555544 3455666778899999
Q ss_pred EeCCCCCccCCCCCCCcccceeeeccCCceEEEEEeCCC--eEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeee
Q 014382 148 WGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAE--HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATV 225 (425)
Q Consensus 148 ~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G~~--~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~ 225 (425)
|-...... ...+.. ....|..++...+ ..+.-..+|.|..|-.... ......+
T Consensus 82 w~~~~~~~-----------~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~-------------~~~~~~~ 136 (814)
T 3mkq_A 82 FNYNTGEK-----------VVDFEA-HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN-------------WALEQTF 136 (814)
T ss_dssp EETTTCCE-----------EEEEEC-CSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGT-------------SEEEEEE
T ss_pred EECCCCcE-----------EEEEec-CCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC-------------ceEEEEE
Confidence 96543211 111111 1234666655433 3455567888888853211 0111122
Q ss_pred ecCCCeEEEEEecC---ceEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcEEEEec----CCceEEEEe
Q 014382 226 DLQREKMVMVACGW---RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISG----GWRHTMAVT 298 (425)
Q Consensus 226 ~~~~~~i~~i~~g~---~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~----G~~~~~~lt 298 (425)
......|..++... ...+....+|.|+.|-...... ...+.......+..++. .....+.-.
T Consensus 137 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 205 (814)
T 3mkq_A 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP-----------NFTLTTGQERGVNYVDYYPLPDKPYMITAS 205 (814)
T ss_dssp ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC-----------SEEEECCCTTCCCEEEECCSTTCCEEEEEC
T ss_pred cCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc-----------eeEEecCCCCCEEEEEEEECCCCCEEEEEe
Confidence 22234576666543 3455556789999996422110 11111111122333332 334555566
Q ss_pred CCCcEEEeeeCCCCCcccCCCCCcccceEeecCCCCcEEEEEcCCC--eeEEEeCCCCEEEeeCCC
Q 014382 299 SDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWR--HTLAVTERQNVFSWGRGT 362 (425)
Q Consensus 299 ~~g~v~~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~--~~~~l~~~g~vy~wG~n~ 362 (425)
.+|.|..|-.... + ....+. .....|..++...+ ..+.-..||.|+.|-...
T Consensus 206 ~dg~i~~~d~~~~-~----------~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 206 DDLTIKIWDYQTK-S----------CVATLE-GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259 (814)
T ss_dssp TTSEEEEEETTTT-E----------EEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred CCCEEEEEECCCC-c----------EEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 7899999954321 1 111111 12345666655433 344445788999986543
No 87
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=67.63 E-value=72 Score=28.93 Aligned_cols=237 Identities=10% Similarity=0.067 Sum_probs=111.9
Q ss_pred cEEEEEcCCC--eEEEEEcCCCEEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeC--CCEEEEEEcCCCEEE
Q 014382 72 EIVSVTCGAD--HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVEGEVQS 147 (425)
Q Consensus 72 ~i~~i~~G~~--~~~~lt~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G--~~~~~~lt~~G~vy~ 147 (425)
.|..++.... ..+....+ |.|+.|- ..++ ....+. .....|..++.. ..+.+....+|.|+.
T Consensus 110 ~v~~~~~s~~~~~l~~~~~d-g~i~i~~--~~~~----------~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 175 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVEN-GELRLWN--KTGA----------LLNVLN-FHRAPIVSVKWNKDGTHIISMDVENVTIL 175 (425)
T ss_dssp CEEEEEECTTSSEEEEEETT-SCEEEEE--TTSC----------EEEEEC-CCCSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred ceEEEEEcCCCCEEEEEeCC-CeEEEEe--CCCC----------eeeecc-CCCccEEEEEECCCCCEEEEEecCCeEEE
Confidence 5777766533 34444566 9999994 1111 111111 123357777664 345666778899999
Q ss_pred EeCCCCCccCCCCCCCcccceeee----ccCCceEEEEE-eCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeee
Q 014382 148 WGRNQNGQLGLGTTEDSLVPQKLQ----AFEGVSIKMVA-AGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKV 222 (425)
Q Consensus 148 ~G~n~~gqlg~~~~~~~~~p~~~~----~~~~~~i~~i~-~G~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v 222 (425)
|-......+..-... ......+. ......+..+. ......++...+|.|+.|-..... .+
T Consensus 176 wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~--------------~~ 240 (425)
T 1r5m_A 176 WNVISGTVMQHFELK-ETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKT--------------PT 240 (425)
T ss_dssp EETTTTEEEEEECCC----------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSS--------------CS
T ss_pred EECCCCcEEEEeecc-ccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCc--------------ee
Confidence 975432111000000 00000000 00000011111 113445666778889888643310 01
Q ss_pred eeeecCCCeEEEEEec--CceEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcEEEEecCCc-eEEEEeC
Q 014382 223 ATVDLQREKMVMVACG--WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWR-HTMAVTS 299 (425)
Q Consensus 223 ~~~~~~~~~i~~i~~g--~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G~~-~~~~lt~ 299 (425)
..+......|..++.. ....+.-..+|.|+.|-..... ....+. .....|..++...+ ..++...
T Consensus 241 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----------~~~~~~-~~~~~i~~~~~~~~~~l~~~~~ 308 (425)
T 1r5m_A 241 GKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGN-----------SQNCFY-GHSQSIVSASWVGDDKVISCSM 308 (425)
T ss_dssp EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBS-----------CSEEEC-CCSSCEEEEEEETTTEEEEEET
T ss_pred eeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc-----------cceEec-CCCccEEEEEECCCCEEEEEeC
Confidence 1111123345555443 3345555678889888643211 011111 11233665554333 5555678
Q ss_pred CCcEEEeeeCCCCCcccCCCCCcccceEeecCCCCcEEEEEcCC--CeeEEEeCCCCEEEeeCC
Q 014382 300 DGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGW--RHTLAVTERQNVFSWGRG 361 (425)
Q Consensus 300 ~g~v~~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~--~~~~~l~~~g~vy~wG~n 361 (425)
+|.|+.|-.... .+..........|..++... ...++-..+|.|+.|=..
T Consensus 309 d~~i~i~d~~~~------------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 309 DGSVRLWSLKQN------------TLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp TSEEEEEETTTT------------EEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECH
T ss_pred CCcEEEEECCCC------------cEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence 899999864321 11111112234566665543 344445578999999653
No 88
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=67.34 E-value=71 Score=28.69 Aligned_cols=217 Identities=14% Similarity=0.109 Sum_probs=113.3
Q ss_pred EeccCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCC--eeecCCCCCcEEEEEc-----CCCeEEEEEcCCCEEEEE
Q 014382 24 ISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSP--TQLSALDGHEIVSVTC-----GADHTTAYSESCMQVYSW 96 (425)
Q Consensus 24 i~~g~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p--~~v~~~~~~~i~~i~~-----G~~~~~~lt~~~g~v~~w 96 (425)
++....+.+++|+.|++|.+-..+--..+. ...-.| ..+...+++.|+.+.. ...+.+++|++ |.+.-.
T Consensus 49 ~~~~~~~ll~fT~~G~~~~~~~~elp~~~~---~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~-G~~Krt 124 (307)
T 1zi0_A 49 VANTHDHILCFSSRGRVYSMKVYQLPEATR---GARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATAN-GTVKKT 124 (307)
T ss_dssp EEETTCEEEEEETTSEEEEEEGGGSCCCCS---SSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETT-SEEEEE
T ss_pred EECCCCEEEEEECCCEEEEEEhhHCcCCCC---CCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCC-CeEEEE
Confidence 455678899999999999886543222211 112222 1223334567777644 23356777888 988877
Q ss_pred eCCCCCCCCCCCCCCcccceeecccCCCCEEEE--EeCCCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeeccC
Q 014382 97 GWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQI--ACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFE 174 (425)
Q Consensus 97 G~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v--~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~ 174 (425)
--.++-.... ..-..+....+..++.+ ..+..+.+++|++|+++-+-......+|....-. ..+..-+
T Consensus 125 ~l~e~~~~~r------~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv----~~i~L~~ 194 (307)
T 1zi0_A 125 VLTEFNRLRT------AGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV----RGIRLGE 194 (307)
T ss_dssp EGGGGTTCCT------TCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCE----ECCCCCT
T ss_pred EHHHhhcccc------CCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCe----EeEEeCC
Confidence 5333211110 00011111123455543 3366789999999999999766554444422111 1122224
Q ss_pred CceEEEEEeC--CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEe--cCceEEEEecCCC
Q 014382 175 GVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVAC--GWRHTISVSSSGR 250 (425)
Q Consensus 175 ~~~i~~i~~G--~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~--g~~~~~~lt~~G~ 250 (425)
+..|+.+..- ....++++++|.+--.-..++-.-+.+... .+...+...+..++.+.. .....+++|++|.
T Consensus 195 ~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG-----~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~ 269 (307)
T 1zi0_A 195 GDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG-----VISIKVTERNGLVVGAVQVDDCDQIMMITDAGT 269 (307)
T ss_dssp TCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCC-----EESSCCCTTTCSEEEEEEECTTCEEEEEESSCC
T ss_pred CCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCC-----EEeeEecCCCCeEEEEEEeCCCceEEEEcCCCc
Confidence 5567766432 234677788887665543332211111100 111111112235555433 5567889999999
Q ss_pred EEEecCCCC
Q 014382 251 LYSYGWSKY 259 (425)
Q Consensus 251 vy~~G~n~~ 259 (425)
+.-+-.++-
T Consensus 270 ~ir~~~~~i 278 (307)
T 1zi0_A 270 LVRTRVSEI 278 (307)
T ss_dssp EEEEEGGGS
T ss_pred EEEEecccc
Confidence 887655443
No 89
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=66.04 E-value=76 Score=28.56 Aligned_cols=219 Identities=12% Similarity=0.177 Sum_probs=112.0
Q ss_pred CCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeeccCCceEEE--EEeCCCeEEEEecCCcEEEeeCCCCCCCCC
Q 014382 133 DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKM--VAAGAEHSVAVAEDGELYGWGWGRYGNLGL 210 (425)
Q Consensus 133 ~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~--i~~G~~~~~~L~~~g~vy~~G~n~~gqlg~ 210 (425)
....+++|.+|.+--.-...+.....+... ...+..-++..+.. ++...++.+++|+.|++|.+-..+.-..+.
T Consensus 8 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g----~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 8 ENIVVMLTKKGFLKRLSQNEYKLQGTGGKG----LSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp CEEEEEEETTCBEEEEEGGGSCBCCSSCCC----EECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred CCEEEEEeCCCEEEEeEHHHhhccccCCCC----ceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence 455788999999876643333211111000 00111112233333 455678899999999999886543222111
Q ss_pred CCCCCCcceeeeeeeecCCCeEEEEEec-----CceEEEEecCCCEEEecCCCCCcC-CCCCCCCcccceeeccccCCcE
Q 014382 211 GDRNDRLIPEKVATVDLQREKMVMVACG-----WRHTISVSSSGRLYSYGWSKYGQL-GHGDFKDHLVPCQLEALRESFI 284 (425)
Q Consensus 211 ~~~~~~~~p~~v~~~~~~~~~i~~i~~g-----~~~~~~lt~~G~vy~~G~n~~gql-g~~~~~~~~~p~~v~~~~~~~i 284 (425)
.... ......+.. . .++.|+.+... ..+.+++|++|.++..-..++-.. +.+ ..-..+. .+..+
T Consensus 84 ~~~G-~~i~~~l~l-~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G-----~~~i~L~--~~d~l 153 (312)
T 1suu_A 84 ASKG-QNISELINL-G-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRG-----VIVIKLN--DKDFV 153 (312)
T ss_dssp -----CBGGGTSCC-C-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----C-----EECBCCC--TTCCE
T ss_pred cCCC-cChhhccCC-C-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCc-----EEEEecC--CCCEE
Confidence 1100 011111111 1 24567776554 356889999999987765443211 011 0001111 12334
Q ss_pred EEEe--cCCceEEEEeCCCcEEEeeeCCCCCcccCCCCCcccceEeecCCCCcEEEEEc--CCCeeEEEeCCCCEEEeeC
Q 014382 285 SQIS--GGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISC--GWRHTLAVTERQNVFSWGR 360 (425)
Q Consensus 285 ~~i~--~G~~~~~~lt~~g~v~~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~--G~~~~~~l~~~g~vy~wG~ 360 (425)
..+. .+.++.+++|++|.++.+-....-..|... .--..+.+..+..|+.+.. ...+.++++++|...-.--
T Consensus 154 v~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~----~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~ 229 (312)
T 1suu_A 154 TSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGT----QGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNM 229 (312)
T ss_dssp EEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTB----CCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEG
T ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCC----CCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEH
Confidence 4432 456788899999999988765543333211 1112233444556666543 3456788889988777665
Q ss_pred CCCCccCCC
Q 014382 361 GTNGQLGHG 369 (425)
Q Consensus 361 n~~gqLG~g 369 (425)
.++-..+.+
T Consensus 230 ~e~~~~~R~ 238 (312)
T 1suu_A 230 SKISELKRG 238 (312)
T ss_dssp GGSCBCCTT
T ss_pred HHhcccCCC
Confidence 555444443
No 90
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=65.81 E-value=78 Score=28.63 Aligned_cols=236 Identities=12% Similarity=0.104 Sum_probs=110.5
Q ss_pred cEEEEEcCCCeEEEEEc--------CCCEEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeC-CCEEEEEEcC
Q 014382 72 EIVSVTCGADHTTAYSE--------SCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG-DSHCLAVTVE 142 (425)
Q Consensus 72 ~i~~i~~G~~~~~~lt~--------~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G-~~~~~~lt~~ 142 (425)
.|..|+...+-.++++- | +.|+.|-...... ........... ...|..++.. +...++-..+
T Consensus 44 ~V~~v~fSpDG~~las~s~d~~~~wd-~~v~~~~~~~~~~------~~~~~~~~~~~--~~~V~~~~~s~d~~~l~~s~d 114 (357)
T 4g56_B 44 QIGAVRYRRDGALLLAASSLSSRTWG-GSIWVFKDPEGAP------NESLCTAGVQT--EAGVTDVAWVSEKGILVASDS 114 (357)
T ss_dssp EEEEEEECSSSCEEEEEECSSSSSCC-EEEEEESSCC---------CGGGCSEEEEC--SSCEEEEEEETTTEEEEEETT
T ss_pred CEEEEEECCCCCEEEEEcCCCCcccc-CeEEEEECCCCCc------ceeEecccCCC--CCCEEEEEEcCCCCEEEEECC
Confidence 57777776665555553 4 6777774322110 00011111111 2246666643 4556666778
Q ss_pred CCEEEEeCCCCCccCCCCCCCcccceeeeccCCceEEEEEeCCC--eEEEEecCCcEEEeeCCCCCCCCCCCCCCCccee
Q 014382 143 GEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAE--HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPE 220 (425)
Q Consensus 143 G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G~~--~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~ 220 (425)
|.|..|-......+ ........--...|..++...+ ..+.-..+|.|..|-... ..
T Consensus 115 g~v~lWd~~~~~~~--------~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~--------------~~ 172 (357)
T 4g56_B 115 GAVELWEILEKESL--------LVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ--------------KA 172 (357)
T ss_dssp SCEEEC----------------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT--------------TE
T ss_pred CEEEEeecccccee--------EEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC--------------Cc
Confidence 99999953221110 0000000011234666655443 344446788899885322 12
Q ss_pred eeeeeecCCCeEEEEEecC---ceEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcEEEEecC--CceEE
Q 014382 221 KVATVDLQREKMVMVACGW---RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGG--WRHTM 295 (425)
Q Consensus 221 ~v~~~~~~~~~i~~i~~g~---~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~~~~ 295 (425)
.+..+......|..++... ...+....||.|..|=......+. ..........+..++.. ..+.+
T Consensus 173 ~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~----------~~~~~~~~~~v~~v~~sp~~~~~l 242 (357)
T 4g56_B 173 VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPAT----------RIDFCASDTIPTSVTWHPEKDDTF 242 (357)
T ss_dssp EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBC----------BCCCTTCCSCEEEEEECTTSTTEE
T ss_pred EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceee----------eeeeccccccccchhhhhcccceE
Confidence 2223332344677776532 234555678999988432211110 00001112235555543 12333
Q ss_pred E-EeCCCcEEEeeeCCCCCcccCCCCCcccceEeecCCCCcEEEEEcCCC---eeEEEeCCCCEEEeeC
Q 014382 296 A-VTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWR---HTLAVTERQNVFSWGR 360 (425)
Q Consensus 296 ~-lt~~g~v~~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~---~~~~l~~~g~vy~wG~ 360 (425)
+ -..++.|+.|-.... .+..........|..++.... ..+.-..||.|+.|=.
T Consensus 243 a~g~~d~~i~~wd~~~~------------~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~ 299 (357)
T 4g56_B 243 ACGDETGNVSLVNIKNP------------DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDA 299 (357)
T ss_dssp EEEESSSCEEEEESSCG------------GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECT
T ss_pred EEeecccceeEEECCCC------------cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEEC
Confidence 3 467889999854321 111111122346777765422 2333458899999943
No 91
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=63.80 E-value=76 Score=27.78 Aligned_cols=59 Identities=24% Similarity=0.198 Sum_probs=31.3
Q ss_pred CeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEE----ecCceEEEEecCCCEEEecC
Q 014382 186 EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVA----CGWRHTISVSSSGRLYSYGW 256 (425)
Q Consensus 186 ~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~----~g~~~~~~lt~~G~vy~~G~ 256 (425)
.|++++. ++++|++|-.... .....+..+++.......+. .-..|+++.. ++++|.+|-
T Consensus 101 ~~~~~~~-~~~iyv~GG~~~~----------~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG 163 (302)
T 2xn4_A 101 TLGAAVL-NGLLYAVGGFDGS----------TGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV-GGLLYAVGG 163 (302)
T ss_dssp SCEEEEE-TTEEEEEEEECSS----------CEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECC
T ss_pred ceEEEEE-CCEEEEEcCCCCC----------ccCceEEEEeCCCCeEeecCCCCCcccCceEEEE-CCEEEEEeC
Confidence 5666665 6899999832110 11122333333333444432 1234555554 789999984
No 92
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=63.80 E-value=76 Score=27.79 Aligned_cols=282 Identities=10% Similarity=0.027 Sum_probs=122.5
Q ss_pred CCCeEEEeccCC-ceEEEE--cCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcCCC--eEEEEEcCCCE
Q 014382 18 FRPVLLISAGAS-HSVALL--SGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD--HTTAYSESCMQ 92 (425)
Q Consensus 18 ~~~i~~i~~g~~-~~~~l~--~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~--~~~~lt~~~g~ 92 (425)
...|..|+.... ..++++ .||.|.+|--.... .....|......-...|..++...+ ..+.-..| +.
T Consensus 38 ~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~-------~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d-~~ 109 (340)
T 4aow_A 38 NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDE-------TNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD-GT 109 (340)
T ss_dssp SSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSS-------SCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT-SE
T ss_pred cCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC-------cccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc-cc
Confidence 346888887643 234443 78999999643211 0111122111111235666665433 34444566 88
Q ss_pred EEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeCCCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeec
Q 014382 93 VYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQA 172 (425)
Q Consensus 93 v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~ 172 (425)
|+.|-...... .......................+.-..||.+..|-...... +.....
T Consensus 110 i~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~-----------~~~~~~ 168 (340)
T 4aow_A 110 LRLWDLTTGTT----------TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK-----------YTVQDE 168 (340)
T ss_dssp EEEEETTTTEE----------EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE-----------EEECSS
T ss_pred ceEEeecccce----------eeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCce-----------EEEEec
Confidence 98886433211 111111111111222222334455567788999884322111 000001
Q ss_pred cCCceEEEEEe--CCCe--EEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEecCc--eEEEEe
Q 014382 173 FEGVSIKMVAA--GAEH--SVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWR--HTISVS 246 (425)
Q Consensus 173 ~~~~~i~~i~~--G~~~--~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~g~~--~~~~lt 246 (425)
.....+..++. .... .+.-..++.|..|-... ...+..+......|..++...+ ..+.-.
T Consensus 169 ~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~--------------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s 234 (340)
T 4aow_A 169 SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN--------------CKLKTNHIGHTGYLNTVTVSPDGSLCASGG 234 (340)
T ss_dssp SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT--------------TEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred cccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC--------------CceeeEecCCCCcEEEEEECCCCCEEEEEe
Confidence 11123333332 2222 23345678888885321 1112222222345666655433 344445
Q ss_pred cCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcEEEEecC-CceEEEEeCCCcEEEeeeCCCCCcccCCCCCcccc
Q 014382 247 SSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGG-WRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSP 325 (425)
Q Consensus 247 ~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G-~~~~~~lt~~g~v~~wG~n~~gqLG~~~~~~~~~p 325 (425)
.||.|..|-.....++ ..+. ....|..+... ..+.++-..++.|..|-......+..-... ..
T Consensus 235 ~Dg~i~iwd~~~~~~~-----------~~~~--~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~---~~ 298 (340)
T 4aow_A 235 KDGQAMLWDLNEGKHL-----------YTLD--GGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQE---VI 298 (340)
T ss_dssp TTCEEEEEETTTTEEE-----------EEEE--CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-----
T ss_pred CCCeEEEEEeccCcee-----------eeec--CCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEecccc---ce
Confidence 7888888854321111 1111 11224444332 234455567888888854321111000000 00
Q ss_pred eEeecCCCCcEEEEEcCCC--eeEEEeCCCCEEEe
Q 014382 326 VQVKFPLDQKVVQISCGWR--HTLAVTERQNVFSW 358 (425)
Q Consensus 326 ~~i~~~~~~~i~~i~~G~~--~~~~l~~~g~vy~w 358 (425)
..........|..++...+ ..+.-..||.|+.|
T Consensus 299 ~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW 333 (340)
T 4aow_A 299 STSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW 333 (340)
T ss_dssp -----CCCCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 0000112245666665443 33333578888888
No 93
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=63.28 E-value=86 Score=28.28 Aligned_cols=230 Identities=11% Similarity=0.047 Sum_probs=109.9
Q ss_pred cEEEEEcCCCeEEEEEcCCCEEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeCC--CEEEEEEcCCCEEEEe
Q 014382 72 EIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--SHCLAVTVEGEVQSWG 149 (425)
Q Consensus 72 ~i~~i~~G~~~~~~lt~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~--~~~~~lt~~G~vy~~G 149 (425)
.|..++...+..++...++|.|..|=-.... ..........-....|..|+... .+.+.-..||.|..|-
T Consensus 84 ~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~--------~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd 155 (344)
T 4gqb_B 84 GVADLTWVGERGILVASDSGAVELWELDENE--------TLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD 155 (344)
T ss_dssp CEEEEEEETTTEEEEEETTSEEEEEEECTTS--------SCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CEEEEEEeCCCeEEEEECCCEEEEEeccCCC--------ceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 4777776544444444333999999532211 11111111111133577776543 4555567789999996
Q ss_pred CCCCCccCCCCCCCcccceeeeccC--CceEEEEEeCCC---eEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeee
Q 014382 150 RNQNGQLGLGTTEDSLVPQKLQAFE--GVSIKMVAAGAE---HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVAT 224 (425)
Q Consensus 150 ~n~~gqlg~~~~~~~~~p~~~~~~~--~~~i~~i~~G~~---~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~ 224 (425)
.... ..+..+. ...|..++.... ..+.-..||.|..|-.... + ....+.
T Consensus 156 ~~~~--------------~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~-~----------~~~~~~- 209 (344)
T 4gqb_B 156 LAQQ--------------VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP-K----------PASQIG- 209 (344)
T ss_dssp TTTT--------------EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSS-S----------CEEECC-
T ss_pred CCCC--------------cEEEEEcCcCCceEEEEecCCCCCceeeecccccccccccccc-c----------eeeeee-
Confidence 4321 1111111 235666665432 2334457899999953211 0 000110
Q ss_pred eecCCCeEEEEEecC---ceEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcEEEEecCC---ceEEEEe
Q 014382 225 VDLQREKMVMVACGW---RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGW---RHTMAVT 298 (425)
Q Consensus 225 ~~~~~~~i~~i~~g~---~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G~---~~~~~lt 298 (425)
.......+..++... ...+.-..||.|..|=.... + ....+.. ....|..|+... ...+.-.
T Consensus 210 ~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~-~----------~~~~~~~-h~~~v~~v~fsp~g~~~lasgs 277 (344)
T 4gqb_B 210 CSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST-S----------CVLSSAV-HSQCVTGLVFSPHSVPFLASLS 277 (344)
T ss_dssp ----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-------------CCEEEEC-CSSCEEEEEECSSSSCCEEEEE
T ss_pred cceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC-c----------EEEEEcC-CCCCEEEEEEccCCCeEEEEEe
Confidence 011122455554432 22233457888888843211 0 0111111 123477776543 2333456
Q ss_pred CCCcEEEeeeCCCCCcccCCCCCcccceEeecCCCCcEEEEEcCCC-eeEE--EeCCCCEEEeeC
Q 014382 299 SDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWR-HTLA--VTERQNVFSWGR 360 (425)
Q Consensus 299 ~~g~v~~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~-~~~~--l~~~g~vy~wG~ 360 (425)
.||.|.+|-... +++ ... ......|..++.... ..++ -..||+|..|=.
T Consensus 278 ~D~~i~vwd~~~-~~~-----------~~~-~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v 329 (344)
T 4gqb_B 278 EDCSLAVLDSSL-SEL-----------FRS-QAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVV 329 (344)
T ss_dssp TTSCEEEECTTC-CEE-----------EEE-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred CCCeEEEEECCC-CcE-----------EEE-cCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEEC
Confidence 899999994321 111 111 122356777775422 2233 247999999954
No 94
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=60.03 E-value=89 Score=27.37 Aligned_cols=204 Identities=7% Similarity=-0.070 Sum_probs=104.7
Q ss_pred CCEEEEEeC--CCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeeccCCceEEEEEeC--CC-eEEEEecCCcEE
Q 014382 124 LRVKQIACG--DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG--AE-HSVAVAEDGELY 198 (425)
Q Consensus 124 ~~i~~v~~G--~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G--~~-~~~~L~~~g~vy 198 (425)
..|..++.. ....++-..+|.|+.|-..... ....+..+. .....|..++.. .. ..+.-..+|.|+
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~--------~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQA--------KNVDLLQSL-RYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTT--------TEEEEEEEE-ECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred CcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCC--------ccccceeee-ecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 356666554 3455666778999999653321 000111111 122345555433 34 566667789999
Q ss_pred EeeCCCCCCCCCCCCCCCcceeeeeeeec--CCCeEEEEEec-CceEEEEecCCCEEEecCCCCCcCCCCCCCCccccee
Q 014382 199 GWGWGRYGNLGLGDRNDRLIPEKVATVDL--QREKMVMVACG-WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQ 275 (425)
Q Consensus 199 ~~G~n~~gqlg~~~~~~~~~p~~v~~~~~--~~~~i~~i~~g-~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~ 275 (425)
.|-....+++ .. +.. ....|..++.. ....+....+|.|+.|-...... ........+..
T Consensus 83 ~wd~~~~~~~-----------~~---~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~~ 145 (342)
T 1yfq_A 83 KVDLIGSPSF-----------QA---LTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD---GVIAVKNLNSN 145 (342)
T ss_dssp EECSSSSSSE-----------EE---CBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT---BCEEEEESCSS
T ss_pred EEEeccCCce-----------Ee---ccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccc---ccccccCCeee
Confidence 9954111111 11 111 23456655544 45666667889999885321000 00000000000
Q ss_pred eccccCCcEEEEecCCceEEEEeCCCcEEEeeeCCCCCcccCCCCCcccceEeecCCCCcEEEEEcCC---CeeEEEeCC
Q 014382 276 LEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGW---RHTLAVTER 352 (425)
Q Consensus 276 v~~~~~~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~---~~~~~l~~~ 352 (425)
... ....|..++...+..++-+.+|.|+.|-....++ .............+..++... ...++-..+
T Consensus 146 ~~~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---------~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d 215 (342)
T 1yfq_A 146 NTK-VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED---------DNGTIEESGLKYQIRDVALLPKEQEGYACSSID 215 (342)
T ss_dssp SSS-SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTT---------CCCEEEECSCSSCEEEEEECSGGGCEEEEEETT
T ss_pred EEe-eCCceEEEEecCCcEEEEeCCCeEEEEECCcccc---------ccceeeecCCCCceeEEEECCCCCCEEEEEecC
Confidence 001 2234777777777767778899999997553111 112222333344566666643 344455688
Q ss_pred CCEEEeeCCCC
Q 014382 353 QNVFSWGRGTN 363 (425)
Q Consensus 353 g~vy~wG~n~~ 363 (425)
|.+..|=....
T Consensus 216 g~i~i~~~~~~ 226 (342)
T 1yfq_A 216 GRVAVEFFDDQ 226 (342)
T ss_dssp SEEEEEECCTT
T ss_pred CcEEEEEEcCC
Confidence 99999876544
No 95
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=58.58 E-value=1e+02 Score=27.70 Aligned_cols=229 Identities=14% Similarity=0.090 Sum_probs=111.0
Q ss_pred CCeEEEeccCCc-eEEEEcCCeEEEEeCCCCCccCCCCCCCccCCe-eecCCCCCcEEEEEcCCC--eEEEEEcCCCEEE
Q 014382 19 RPVLLISAGASH-SVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPT-QLSALDGHEIVSVTCGAD--HTTAYSESCMQVY 94 (425)
Q Consensus 19 ~~i~~i~~g~~~-~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~-~v~~~~~~~i~~i~~G~~--~~~~lt~~~g~v~ 94 (425)
..|..++...+. .+.-..||.|.+|--.....+ .... ...... ..|..|+...+ +.+.-..| |.|.
T Consensus 83 ~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~--------~~~~~~~~~H~-~~V~~v~~spdg~~l~sgs~d-~~i~ 152 (344)
T 4gqb_B 83 AGVADLTWVGERGILVASDSGAVELWELDENETL--------IVSKFCKYEHD-DIVSTVSVLSSGTQAVSGSKD-ICIK 152 (344)
T ss_dssp SCEEEEEEETTTEEEEEETTSEEEEEEECTTSSC--------EEEEEEEECCS-SCEEEEEECTTSSEEEEEETT-SCEE
T ss_pred CCEEEEEEeCCCeEEEEECCCEEEEEeccCCCce--------eEeeccccCCC-CCEEEEEECCCCCEEEEEeCC-CeEE
Confidence 357777754443 344457899999964321111 1111 111111 25777765543 33334456 8999
Q ss_pred EEeCCCCCCCCCCCCCCcccceeecccC--CCCEEEEEeCC---CEEEEEEcCCCEEEEeCCCCCccCCCCCCCccccee
Q 014382 95 SWGWGDFGRLGHGNSSDLFTPLPIKALH--SLRVKQIACGD---SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQK 169 (425)
Q Consensus 95 ~wG~n~~g~lg~~~~~~~~~p~~v~~~~--~~~i~~v~~G~---~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~ 169 (425)
.|--.. ...+..+. ...|..++... ...+.-..||.|..|-......+ .+.
T Consensus 153 iwd~~~--------------~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~----------~~~ 208 (344)
T 4gqb_B 153 VWDLAQ--------------QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPA----------SQI 208 (344)
T ss_dssp EEETTT--------------TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCE----------EEC
T ss_pred EEECCC--------------CcEEEEEcCcCCceEEEEecCCCCCceeeecccccccccccccccee----------eee
Confidence 994321 11222222 33677777643 33444567899999954321100 000
Q ss_pred eeccCCceEEEEEeCC---CeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEecC---ceEE
Q 014382 170 LQAFEGVSIKMVAAGA---EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW---RHTI 243 (425)
Q Consensus 170 ~~~~~~~~i~~i~~G~---~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~g~---~~~~ 243 (425)
........+..++... ...+.-..||.|..|-... + ..+..+......|..++... .+.+
T Consensus 209 ~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~-~-------------~~~~~~~~h~~~v~~v~fsp~g~~~la 274 (344)
T 4gqb_B 209 GCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS-T-------------SCVLSSAVHSQCVTGLVFSPHSVPFLA 274 (344)
T ss_dssp C----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC----------------CCEEEECCSSCEEEEEECSSSSCCEE
T ss_pred ecceeeccceeeeecCCCCcceEEeccCCcEEEEECCC-C-------------cEEEEEcCCCCCEEEEEEccCCCeEEE
Confidence 0111222355554432 2233346788899884321 1 11222222244677776543 3344
Q ss_pred EEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcEEEEecCC-ceEEE--EeCCCcEEEeee
Q 014382 244 SVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGW-RHTMA--VTSDGKLYGWGW 308 (425)
Q Consensus 244 ~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G~-~~~~~--lt~~g~v~~wG~ 308 (425)
.-..||.|+.|-... +++ ..... -...|..++... ...++ -..||.|..|=.
T Consensus 275 sgs~D~~i~vwd~~~-~~~-----------~~~~~-H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v 329 (344)
T 4gqb_B 275 SLSEDCSLAVLDSSL-SEL-----------FRSQA-HRDFVRDATWSPLNHSLLTTVGWDHQVVHHVV 329 (344)
T ss_dssp EEETTSCEEEECTTC-CEE-----------EEECC-CSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred EEeCCCeEEEEECCC-CcE-----------EEEcC-CCCCEEEEEEeCCCCeEEEEEcCCCeEEEEEC
Confidence 556899999994321 111 11111 123477776542 22232 347899999954
No 96
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=58.49 E-value=98 Score=27.34 Aligned_cols=17 Identities=6% Similarity=0.084 Sum_probs=12.3
Q ss_pred CceEEEEecCCCEEEecC
Q 014382 239 WRHTISVSSSGRLYSYGW 256 (425)
Q Consensus 239 ~~~~~~lt~~G~vy~~G~ 256 (425)
..|+++.. +++||.+|-
T Consensus 101 ~~~~~~~~-~~~iyv~GG 117 (318)
T 2woz_A 101 CLFGLGEV-DDKIYVVAG 117 (318)
T ss_dssp CSCEEEEE-TTEEEEEEE
T ss_pred cccceEEE-CCEEEEEcC
Confidence 35666655 789999984
No 97
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=58.28 E-value=1.1e+02 Score=28.08 Aligned_cols=264 Identities=13% Similarity=0.177 Sum_probs=127.1
Q ss_pred CCeEEEeccCCceEEEE--cCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcCCC--eEEEEEcCCCEEE
Q 014382 19 RPVLLISAGASHSVALL--SGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD--HTTAYSESCMQVY 94 (425)
Q Consensus 19 ~~i~~i~~g~~~~~~l~--~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~--~~~~lt~~~g~v~ 94 (425)
.+|..++.......+++ .||.|.+|-.... + ....+.... ..|..++.... ..+.-..| +.|.
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~-~----------~~~~l~~h~-~~V~~v~~~~~~~~l~sgs~D-~~i~ 175 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETG-D----------FERTLKGHT-DSVQDISFDHSGKLLASCSAD-MTIK 175 (410)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTC-C----------CCEEECCCS-SCEEEEEECTTSSEEEEEETT-SCCC
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-c----------EEEEEeccC-CcEEEEEEcCCCCEEEEEeCC-CeEE
Confidence 36777777665555544 7899999965321 1 111222222 24666665432 33333455 8888
Q ss_pred EEeCCCCCCCCCCCCCCcccceeeccc--CCCCEEEEEeC--CCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceee
Q 014382 95 SWGWGDFGRLGHGNSSDLFTPLPIKAL--HSLRVKQIACG--DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKL 170 (425)
Q Consensus 95 ~wG~n~~g~lg~~~~~~~~~p~~v~~~--~~~~i~~v~~G--~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~ 170 (425)
.|-....- .+..+ ....|..++.. ..+.+.-..||.|..|-...... ...+
T Consensus 176 iwd~~~~~--------------~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~-----------~~~~ 230 (410)
T 1vyh_C 176 LWDFQGFE--------------CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC-----------VKTF 230 (410)
T ss_dssp EEETTSSC--------------EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE-----------EEEE
T ss_pred EEeCCCCc--------------eeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-----------EEEE
Confidence 88532211 11111 12356666654 35666677899999996533110 0111
Q ss_pred eccCCceEEEEEeCC--CeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEec----------
Q 014382 171 QAFEGVSIKMVAAGA--EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACG---------- 238 (425)
Q Consensus 171 ~~~~~~~i~~i~~G~--~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~g---------- 238 (425)
.. ....|..+.... ...+.-..||.|..|-...... +..+......|..++-.
T Consensus 231 ~~-h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~--------------~~~~~~h~~~v~~~~~~~~~~~~~~~~ 295 (410)
T 1vyh_C 231 TG-HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC--------------KAELREHRHVVECISWAPESSYSSISE 295 (410)
T ss_dssp EC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE--------------EEEECCCSSCEEEEEECCSCGGGGGGG
T ss_pred eC-CCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCce--------------eeEecCCCceEEEEEEcCcccccchhh
Confidence 11 112344444333 3334445678888885322110 00111111123333221
Q ss_pred ------------CceEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcEEEEec--CCceEEEEeCCCcEE
Q 014382 239 ------------WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISG--GWRHTMAVTSDGKLY 304 (425)
Q Consensus 239 ------------~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~~~~~lt~~g~v~ 304 (425)
..+.+.-..||.|..|-...... ...+.. ....|..++. ...+.+.-..||.|.
T Consensus 296 ~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~-----------~~~~~~-h~~~v~~v~~~~~g~~l~s~s~D~~i~ 363 (410)
T 1vyh_C 296 ATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC-----------LMTLVG-HDNWVRGVLFHSGGKFILSCADDKTLR 363 (410)
T ss_dssp CCSCC-------CCEEEEEETTSEEEEEETTTTEE-----------EEEEEC-CSSCEEEEEECSSSSCEEEEETTTEEE
T ss_pred hccccccccCCCCCEEEEEeCCCeEEEEECCCCce-----------EEEEEC-CCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 23455556788898886422110 111111 1223555543 344555567889999
Q ss_pred EeeeCCCCCcccCCCCCcccceEeecCCCCcEEEEEcCCCe--eEEEeCCCCEEEee
Q 014382 305 GWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRH--TLAVTERQNVFSWG 359 (425)
Q Consensus 305 ~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~--~~~l~~~g~vy~wG 359 (425)
.|-...... ...+. .....|..++..... .+.-..||.|..|-
T Consensus 364 vwd~~~~~~-----------~~~~~-~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 364 VWDYKNKRC-----------MKTLN-AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp EECCTTSCC-----------CEEEE-CCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEECCCCce-----------EEEEc-CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 995432111 11111 123456676665443 33334788888884
No 98
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=57.85 E-value=1.1e+02 Score=27.82 Aligned_cols=153 Identities=15% Similarity=0.120 Sum_probs=79.4
Q ss_pred EEcCCCeEEEEE---cCCCEEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeC---CCEEEEEEcCCCEEEEe
Q 014382 76 VTCGADHTTAYS---ESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG---DSHCLAVTVEGEVQSWG 149 (425)
Q Consensus 76 i~~G~~~~~~lt---~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G---~~~~~~lt~~G~vy~~G 149 (425)
+++...+..++. .+ |.|++|-....+++.. +.....-....|..++.. ....+.-..||.|..|-
T Consensus 40 ~~~~~~~~~~~~~~~~~-g~i~v~~~~~~~~~~~--------~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~ 110 (402)
T 2aq5_A 40 CAVNPKFMALICEASGG-GAFLVLPLGKTGRVDK--------NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWE 110 (402)
T ss_dssp EEECSSEEEEEBCCSSS-CCEEEEETTCCEECCT--------TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEE
T ss_pred EEECCCeEEEEEEEcCC-CEEEEEECccCCCCCC--------CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEE
Confidence 455566655553 35 8999997655443310 011001113367777764 45566667789999997
Q ss_pred CCCCCccCCCCCCCcccceeeeccCCceEEEEEeCCC---eEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeee-
Q 014382 150 RNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAE---HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATV- 225 (425)
Q Consensus 150 ~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G~~---~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~- 225 (425)
....+... ....+..........|..++.... ..+.-..||.|+.|-.... ..+..+
T Consensus 111 ~~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~--------------~~~~~~~ 171 (402)
T 2aq5_A 111 IPDGGLVL-----PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG--------------AAVLTLG 171 (402)
T ss_dssp CCTTCCSS-----CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT--------------EEEEEEC
T ss_pred ccCCCCcc-----ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC--------------CccEEEe
Confidence 65432111 000111111112345777765543 3445567899999963321 122222
Q ss_pred -ecCCCeEEEEEec--CceEEEEecCCCEEEecC
Q 014382 226 -DLQREKMVMVACG--WRHTISVSSSGRLYSYGW 256 (425)
Q Consensus 226 -~~~~~~i~~i~~g--~~~~~~lt~~G~vy~~G~ 256 (425)
......|..++.. ....+.-..||.|+.|-.
T Consensus 172 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 205 (402)
T 2aq5_A 172 PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEP 205 (402)
T ss_dssp TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEET
T ss_pred cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeC
Confidence 1123456666653 334455567888888854
No 99
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=56.96 E-value=1.1e+02 Score=27.45 Aligned_cols=261 Identities=13% Similarity=0.057 Sum_probs=128.0
Q ss_pred CceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEE--EEcCCCeEEEEEcCCCEEEEEeCCCCCCCCC
Q 014382 29 SHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVS--VTCGADHTTAYSESCMQVYSWGWGDFGRLGH 106 (425)
Q Consensus 29 ~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~--i~~G~~~~~~lt~~~g~v~~wG~n~~g~lg~ 106 (425)
...++++++|.+--.=-..+.....+. .-..-+..-++..++. ++....+.+++|+. |++|.+-..+.-..++
T Consensus 9 ~~~v~~T~~G~iKr~~~~~~~~~~~~~----~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~-G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 9 NIVVMLTKKGFLKRLSQNEYKLQGTGG----KGLSSFDLNDGDEIVIALCVNTHDYLFMISNE-GKLYLINAYEIKDSSR 83 (312)
T ss_dssp EEEEEEETTCBEEEEEGGGSCBCCSSC----CCEECCCCCTTCCEEEEEEEETTCEEEEEETT-SEEEEEEGGGSCC---
T ss_pred CEEEEEeCCCEEEEeEHHHhhccccCC----CCceecccCCCCEEEEEEEECCCCEEEEEECC-CeEEEEEHHHCCCCCc
Confidence 346778899988644322221111000 0011111112223444 34567778889988 9999997654322222
Q ss_pred CCCCCcccceeecccCCCCEEEEEeC-----CCEEEEEEcCCCEEEEeCCCCCcc-CCCCCCCcccceeeeccCCceEEE
Q 014382 107 GNSSDLFTPLPIKALHSLRVKQIACG-----DSHCLAVTVEGEVQSWGRNQNGQL-GLGTTEDSLVPQKLQAFEGVSIKM 180 (425)
Q Consensus 107 ~~~~~~~~p~~v~~~~~~~i~~v~~G-----~~~~~~lt~~G~vy~~G~n~~gql-g~~~~~~~~~p~~~~~~~~~~i~~ 180 (425)
...- ......+....+++|+.+... ..+.+++|++|.++-.--..+-.. +.+. ..+..-++..++.
T Consensus 84 ~~~G-~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~-------~~i~L~~~d~lv~ 155 (312)
T 1suu_A 84 ASKG-QNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGV-------IVIKLNDKDFVTS 155 (312)
T ss_dssp -----CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CE-------ECBCCCTTCCEEE
T ss_pred cCCC-cChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcE-------EEEecCCCCEEEE
Confidence 1110 001112233346677777654 456899999999998865443110 0110 0111112344554
Q ss_pred EE--eCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEe--cCceEEEEecCCCEEEecC
Q 014382 181 VA--AGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVAC--GWRHTISVSSSGRLYSYGW 256 (425)
Q Consensus 181 i~--~G~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~--g~~~~~~lt~~G~vy~~G~ 256 (425)
+. .+..+.++++++|.+.-+-..+.-..|..... .+.-.+. .+..|+.+.. ...+.++++++|.+-.+-.
T Consensus 156 ~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~G-----v~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~ 229 (312)
T 1suu_A 156 AEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQG-----VCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNM 229 (312)
T ss_dssp EEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCC-----EECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEG
T ss_pred EEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCC-----eEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEH
Confidence 43 35677899999999998876554333332111 1111111 1345555543 3456788899998776665
Q ss_pred CCCCcCCCCCCCCcccceeeccccCCcEEE--EecCCceEEEEeCCCcEEEeeeCC
Q 014382 257 SKYGQLGHGDFKDHLVPCQLEALRESFISQ--ISGGWRHTMAVTSDGKLYGWGWNK 310 (425)
Q Consensus 257 n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~--i~~G~~~~~~lt~~g~v~~wG~n~ 310 (425)
.++...+.+..-.. ... +..-.+..+.. .....+..++++++|.+.-.-.+.
T Consensus 230 ~e~~~~~R~~kGv~-~~~-~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~~~ 283 (312)
T 1suu_A 230 SKISELKRGATGYT-SYK-KSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAGK 283 (312)
T ss_dssp GGSCBCCTTCCCEE-CSC-TTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEGGG
T ss_pred HHhcccCCCCCCEE-eeE-ccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEccc
Confidence 55544433211100 000 00001112322 223556677788888776554443
No 100
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=56.91 E-value=1.1e+02 Score=27.61 Aligned_cols=244 Identities=9% Similarity=0.052 Sum_probs=113.1
Q ss_pred CCCCeEEEeccCCc--eEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcC---CCeEEEEEcCCC
Q 014382 17 PFRPVLLISAGASH--SVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG---ADHTTAYSESCM 91 (425)
Q Consensus 17 ~~~~i~~i~~g~~~--~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G---~~~~~~lt~~~g 91 (425)
...+|..++..... .+.-..||.|.+|-...... .......+... ...|..++.. ....+.-..| |
T Consensus 66 ~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~-------~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~d-g 136 (416)
T 2pm9_A 66 VDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN-------AINSMARFSNH-SSSVKTVKFNAKQDNVLASGGNN-G 136 (416)
T ss_dssp CSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTS-------CCCEEEECCCS-SSCCCEEEECSSSTTBEEEECSS-S
T ss_pred cCCceEEEEECCCCCeEEEEccCCeEEEeecccccc-------cccchhhccCC-ccceEEEEEcCCCCCEEEEEcCC-C
Confidence 45578888765443 33334788999886543100 00011111111 1245555554 3333444456 9
Q ss_pred EEEEEeCCCCCCCCCCCCCCcccceeec--ccCCCCEEEEEeCC---CEEEEEEcCCCEEEEeCCCCCccCCCCCCCccc
Q 014382 92 QVYSWGWGDFGRLGHGNSSDLFTPLPIK--ALHSLRVKQIACGD---SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLV 166 (425)
Q Consensus 92 ~v~~wG~n~~g~lg~~~~~~~~~p~~v~--~~~~~~i~~v~~G~---~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~ 166 (425)
.|+.|-........ ....+..+. ......|..++... ...+.-..+|.|..|-......
T Consensus 137 ~v~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~----------- 200 (416)
T 2pm9_A 137 EIFIWDMNKCTESP-----SNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE----------- 200 (416)
T ss_dssp CEEBCBTTTTSSCT-----TTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE-----------
T ss_pred eEEEEECCCCcccc-----ccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc-----------
Confidence 99999544322000 000111110 01123456665543 3444556789999996533110
Q ss_pred ceeeeccC-----CceEEEEEeCCC---eEEEEecCC---cEEEeeCCCCCCCCCCCCCCCcceeeeeeee-cCCCeEEE
Q 014382 167 PQKLQAFE-----GVSIKMVAAGAE---HSVAVAEDG---ELYGWGWGRYGNLGLGDRNDRLIPEKVATVD-LQREKMVM 234 (425)
Q Consensus 167 p~~~~~~~-----~~~i~~i~~G~~---~~~~L~~~g---~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~-~~~~~i~~ 234 (425)
...+.... ...|..++...+ ..+.-..++ .|+.|-.....+. .. .+. .....|..
T Consensus 201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~-----------~~--~~~~~~~~~v~~ 267 (416)
T 2pm9_A 201 VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP-----------LQ--TLNQGHQKGILS 267 (416)
T ss_dssp EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC-----------SB--CCCSCCSSCEEE
T ss_pred ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC-----------cE--EeecCccCceeE
Confidence 11111110 335666665433 344445566 7888864331110 00 011 11235666
Q ss_pred EEe---cCceEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcEEEEecCC---ceEEEEeCCCcEEEeee
Q 014382 235 VAC---GWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGW---RHTMAVTSDGKLYGWGW 308 (425)
Q Consensus 235 i~~---g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G~---~~~~~lt~~g~v~~wG~ 308 (425)
++. .....+.-..||.|+.|-...... ...+.. ....|..++... ...+.-..+|.|..|-.
T Consensus 268 ~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~-----------~~~~~~-~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~ 335 (416)
T 2pm9_A 268 LDWCHQDEHLLLSSGRDNTVLLWNPESAEQ-----------LSQFPA-RGNWCFKTKFAPEAPDLFACASFDNKIEVQTL 335 (416)
T ss_dssp EEECSSCSSCEEEEESSSEEEEECSSSCCE-----------EEEEEC-SSSCCCCEEECTTCTTEEEECCSSSEEEEEES
T ss_pred EEeCCCCCCeEEEEeCCCCEEEeeCCCCcc-----------ceeecC-CCCceEEEEECCCCCCEEEEEecCCcEEEEEc
Confidence 654 345566667789999985322110 111111 112244444433 33444456888998876
Q ss_pred CC
Q 014382 309 NK 310 (425)
Q Consensus 309 n~ 310 (425)
..
T Consensus 336 ~~ 337 (416)
T 2pm9_A 336 QN 337 (416)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 101
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=54.39 E-value=1.1e+02 Score=26.72 Aligned_cols=248 Identities=10% Similarity=-0.005 Sum_probs=121.2
Q ss_pred cEEEEEcCC--CeEEEEEcCCCEEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeC--CC-EEEEEEcCCCEE
Q 014382 72 EIVSVTCGA--DHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DS-HCLAVTVEGEVQ 146 (425)
Q Consensus 72 ~i~~i~~G~--~~~~~lt~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G--~~-~~~~lt~~G~vy 146 (425)
.|..++... ...+.-..+ |.|+.|-..... ....+..+. .....|..++.. .. +.+.-+.+|.|+
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d-~~v~iw~~~~~~--------~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWD-GSLTVYKFDIQA--------KNVDLLQSL-RYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETT-SEEEEEEEETTT--------TEEEEEEEE-ECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred cEEEEEEcCCCCEEEEEcCC-CeEEEEEeCCCC--------ccccceeee-ecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 466666543 334444566 999999533211 000111111 223356666553 44 677777899999
Q ss_pred EEeC-CCCCccCCCCCCCcccceeeec-cCCceEEEEEeC-CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeee
Q 014382 147 SWGR-NQNGQLGLGTTEDSLVPQKLQA-FEGVSIKMVAAG-AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVA 223 (425)
Q Consensus 147 ~~G~-n~~gqlg~~~~~~~~~p~~~~~-~~~~~i~~i~~G-~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~ 223 (425)
.|-. .. +++ ..+.. .....|..++.. ....+.-..+|.|+.|-...... .. .......+.
T Consensus 83 ~wd~~~~-~~~-----------~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~--~~~~~~~~~ 145 (342)
T 1yfq_A 83 KVDLIGS-PSF-----------QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD---GV--IAVKNLNSN 145 (342)
T ss_dssp EECSSSS-SSE-----------EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT---BC--EEEEESCSS
T ss_pred EEEeccC-Cce-----------EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccc---cc--ccccCCeee
Confidence 9954 32 111 11111 012345555433 55666677889999995321000 00 000000011
Q ss_pred eeecCCCeEEEEEecCceEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcEEEEecC---CceEEEEeCC
Q 014382 224 TVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGG---WRHTMAVTSD 300 (425)
Q Consensus 224 ~~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G---~~~~~~lt~~ 300 (425)
.+. ....|..++...+..++.+.+|.|+.|-....++. ............|..++.. ....++-..+
T Consensus 146 ~~~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---------~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d 215 (342)
T 1yfq_A 146 NTK-VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD---------NGTIEESGLKYQIRDVALLPKEQEGYACSSID 215 (342)
T ss_dssp SSS-SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTC---------CCEEEECSCSSCEEEEEECSGGGCEEEEEETT
T ss_pred EEe-eCCceEEEEecCCcEEEEeCCCeEEEEECCccccc---------cceeeecCCCCceeEEEECCCCCCEEEEEecC
Confidence 111 13467777777777667778999999975431110 0111111122336665554 3455556788
Q ss_pred CcEEEeeeCCCCCcccCCCCCcccceEeecCC--------CCcEEEEEcCC--CeeEEEeCCCCEEEeeCC
Q 014382 301 GKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPL--------DQKVVQISCGW--RHTLAVTERQNVFSWGRG 361 (425)
Q Consensus 301 g~v~~wG~n~~gqLG~~~~~~~~~p~~i~~~~--------~~~i~~i~~G~--~~~~~l~~~g~vy~wG~n 361 (425)
|.|..|-....+. .........+.... ...|..++... ...+.-..+|.|+.|=..
T Consensus 216 g~i~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~ 281 (342)
T 1yfq_A 216 GRVAVEFFDDQGD-----DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ 281 (342)
T ss_dssp SEEEEEECCTTCC-----STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred CcEEEEEEcCCCc-----ccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCc
Confidence 9999987654310 00000111111110 12566665532 334455688999999654
No 102
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=54.21 E-value=1.2e+02 Score=27.10 Aligned_cols=217 Identities=12% Similarity=0.063 Sum_probs=110.0
Q ss_pred EEeCCCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeeccCCceEEEEEe-----CCCeEEEEecCCcEEEeeCC
Q 014382 129 IACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAA-----GAEHSVAVAEDGELYGWGWG 203 (425)
Q Consensus 129 v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~-----G~~~~~~L~~~g~vy~~G~n 203 (425)
++....+.+++|+.|++|.+-.......+....- ......+...++++|+.+.. ...+.+++|++|.+.-.-..
T Consensus 49 ~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G-~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~ 127 (307)
T 1zi0_A 49 VANTHDHILCFSSRGRVYSMKVYQLPEATRGARG-RPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLT 127 (307)
T ss_dssp EEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCC-EEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGG
T ss_pred EECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCC-eEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHH
Confidence 4556788999999999999976554433321111 11111222234566777644 23357888999988866433
Q ss_pred CCCCCCCCCCCCCcceeeeeeeecCCCeEEEE--EecCceEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccC
Q 014382 204 RYGNLGLGDRNDRLIPEKVATVDLQREKMVMV--ACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRE 281 (425)
Q Consensus 204 ~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i--~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~ 281 (425)
++-... ......-.+. .+..++.+ ..+.++.+++|++|+++.+-..+-..+|....-. ..+..-.+
T Consensus 128 e~~~~~-------r~G~~~i~l~-~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv----~~i~L~~~ 195 (307)
T 1zi0_A 128 EFNRLR-------TAGKVAIKLV-DGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV----RGIRLGEG 195 (307)
T ss_dssp GGTTCC-------TTCEESSCCC-TTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCE----ECCCCCTT
T ss_pred Hhhccc-------cCCeEEEEEC-CCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCe----EeEEeCCC
Confidence 321111 0011111111 12344443 2356788999999999988665544444321111 11222234
Q ss_pred CcEEEEecC--CceEEEEeCCCcEEEeeeCCCCCcccCCCCCcccceE-eecCC-CCcEEEEEc--CCCeeEEEeCCCCE
Q 014382 282 SFISQISGG--WRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQ-VKFPL-DQKVVQISC--GWRHTLAVTERQNV 355 (425)
Q Consensus 282 ~~i~~i~~G--~~~~~~lt~~g~v~~wG~n~~gqLG~~~~~~~~~p~~-i~~~~-~~~i~~i~~--G~~~~~~l~~~g~v 355 (425)
..|..+..- ....+++|++|.+--.-...+-.-+.+. .-+. +.+.. ...++.+.. .....++++++|.+
T Consensus 196 d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~-----kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ 270 (307)
T 1zi0_A 196 DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRAT-----KGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTL 270 (307)
T ss_dssp CCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTS-----CCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCE
T ss_pred CEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCC-----CCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcE
Confidence 556666432 2346677787764433222221111110 0011 11111 134444333 55667888999998
Q ss_pred EEeeCCCC
Q 014382 356 FSWGRGTN 363 (425)
Q Consensus 356 y~wG~n~~ 363 (425)
.-+-.++-
T Consensus 271 ir~~~~~i 278 (307)
T 1zi0_A 271 VRTRVSEI 278 (307)
T ss_dssp EEEEGGGS
T ss_pred EEEecccc
Confidence 87655443
No 103
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=53.85 E-value=1.3e+02 Score=27.26 Aligned_cols=243 Identities=9% Similarity=0.029 Sum_probs=112.5
Q ss_pred cEEEEEcCCCe--EEEEEcCCCEEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeC---CCEEEEEEcCCCEE
Q 014382 72 EIVSVTCGADH--TTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG---DSHCLAVTVEGEVQ 146 (425)
Q Consensus 72 ~i~~i~~G~~~--~~~lt~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G---~~~~~~lt~~G~vy 146 (425)
.|..++..... .+.-..+ |.|..|-...... ...+..........|..++.. ....+.-..+|.|+
T Consensus 69 ~v~~~~~s~~~~~l~~~~~d-g~v~vw~~~~~~~--------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 139 (416)
T 2pm9_A 69 KFNDLDWSHNNKIIAGALDN-GSLELYSTNEANN--------AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIF 139 (416)
T ss_dssp CEEEEEECSSSSCEEEEESS-SCEEEECCSSTTS--------CCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEE
T ss_pred ceEEEEECCCCCeEEEEccC-CeEEEeecccccc--------cccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEE
Confidence 57777654433 3333456 9999995432100 000111111122346666554 45566667789999
Q ss_pred EEeCCCCCccCCCCCCCcccceeeeccCCceEEEEEeCC---CeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeee
Q 014382 147 SWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA---EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVA 223 (425)
Q Consensus 147 ~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G~---~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~ 223 (425)
.|-......... ........... .....|..++... ...+.-..+|.|..|-.... ..+.
T Consensus 140 iwd~~~~~~~~~--~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~--------------~~~~ 202 (416)
T 2pm9_A 140 IWDMNKCTESPS--NYTPLTPGQSM-SSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK--------------KEVI 202 (416)
T ss_dssp BCBTTTTSSCTT--TCCCBCCCCSC-CSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT--------------EEEE
T ss_pred EEECCCCccccc--ccccccccccc-CCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC--------------Ccce
Confidence 996543220000 00000000000 1122455555443 33444457888998863221 1122
Q ss_pred eeecC------CCeEEEEEecCc---eEEEEecCC---CEEEecCCCCCcCCCCCCCCcccceeecc-ccCCcEEEEec-
Q 014382 224 TVDLQ------REKMVMVACGWR---HTISVSSSG---RLYSYGWSKYGQLGHGDFKDHLVPCQLEA-LRESFISQISG- 289 (425)
Q Consensus 224 ~~~~~------~~~i~~i~~g~~---~~~~lt~~G---~vy~~G~n~~gqlg~~~~~~~~~p~~v~~-~~~~~i~~i~~- 289 (425)
.+... ...|..++...+ ..+.-..+| .|+.|-.....+ +..... .....|..++.
T Consensus 203 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-----------~~~~~~~~~~~~v~~~~~s 271 (416)
T 2pm9_A 203 HLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT-----------PLQTLNQGHQKGILSLDWC 271 (416)
T ss_dssp EECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS-----------CSBCCCSCCSSCEEEEEEC
T ss_pred EEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC-----------CcEEeecCccCceeEEEeC
Confidence 22211 345666655433 344445566 777775432111 111111 11233666654
Q ss_pred --CCceEEEEeCCCcEEEeeeCCCCCcccCCCCCcccceEeecCCCCcEEEEEcCCC---eeEEEeCCCCEEEeeCCCC
Q 014382 290 --GWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWR---HTLAVTERQNVFSWGRGTN 363 (425)
Q Consensus 290 --G~~~~~~lt~~g~v~~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~---~~~~l~~~g~vy~wG~n~~ 363 (425)
.....+.-..+|.|+.|-.... .+...-......|..++.... ..+.-..||.|..|-....
T Consensus 272 ~~~~~~l~s~~~dg~v~~wd~~~~------------~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 272 HQDEHLLLSSGRDNTVLLWNPESA------------EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp SSCSSCEEEEESSSEEEEECSSSC------------CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred CCCCCeEEEEeCCCCEEEeeCCCC------------ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 3455566678899999954321 111111111234545554433 3333346889999976543
No 104
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=53.64 E-value=2.4e+02 Score=30.37 Aligned_cols=147 Identities=13% Similarity=0.089 Sum_probs=72.5
Q ss_pred CCeEEEeccCCceEE--EEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcCCC--eEEEEEcCCCEEE
Q 014382 19 RPVLLISAGASHSVA--LLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD--HTTAYSESCMQVY 94 (425)
Q Consensus 19 ~~i~~i~~g~~~~~~--l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~--~~~~lt~~~g~v~ 94 (425)
..|..++.......+ -..||.|.+|-...... ...+... ...|..++...+ ..+....| |.|.
T Consensus 616 ~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~-----------~~~~~~h-~~~v~~~~~s~~~~~l~s~~~d-~~v~ 682 (1249)
T 3sfz_A 616 DAVYHACFSQDGQRIASCGADKTLQVFKAETGEK-----------LLDIKAH-EDEVLCCAFSSDDSYIATCSAD-KKVK 682 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----------EEEECCC-SSCEEEEEECTTSSEEEEEETT-SEEE
T ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCE-----------EEEeccC-CCCEEEEEEecCCCEEEEEeCC-CeEE
Confidence 456556654443333 34677888886532111 1112211 235666666433 44444566 9999
Q ss_pred EEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeCC--C--EEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceee
Q 014382 95 SWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--S--HCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKL 170 (425)
Q Consensus 95 ~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~--~--~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~ 170 (425)
+|-.... .+..........|..++... . ..+.-+.+|.|..|-...... ...+
T Consensus 683 vwd~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~-----------~~~~ 739 (1249)
T 3sfz_A 683 IWDSATG------------KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC-----------RNTM 739 (1249)
T ss_dssp EEETTTC------------CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE-----------EEEE
T ss_pred EEECCCC------------ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch-----------hhee
Confidence 9953321 11111111233566666643 2 344456789999996533210 0111
Q ss_pred eccCCceEEEEEeC--CCeEEEEecCCcEEEeeC
Q 014382 171 QAFEGVSIKMVAAG--AEHSVAVAEDGELYGWGW 202 (425)
Q Consensus 171 ~~~~~~~i~~i~~G--~~~~~~L~~~g~vy~~G~ 202 (425)
.. ....|..++.. ....+.-..+|.|..|-.
T Consensus 740 ~~-h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~ 772 (1249)
T 3sfz_A 740 FG-HTNSVNHCRFSPDDELLASCSADGTLRLWDV 772 (1249)
T ss_dssp CC-CSSCEEEEEECSSTTEEEEEESSSEEEEEEG
T ss_pred cC-CCCCEEEEEEecCCCEEEEEECCCeEEEEeC
Confidence 11 12245555443 334555667888888853
No 105
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=53.05 E-value=34 Score=31.02 Aligned_cols=65 Identities=20% Similarity=0.191 Sum_probs=32.6
Q ss_pred CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEE-----EecCceEEEEecCCCEEEecC
Q 014382 185 AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMV-----ACGWRHTISVSSSGRLYSYGW 256 (425)
Q Consensus 185 ~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i-----~~g~~~~~~lt~~G~vy~~G~ 256 (425)
..|++++. +++||++|-.... ..........+..++........+ ..-..|+++. .+++||.+|-
T Consensus 57 ~~~~~~~~-~~~lyv~GG~~~~-----~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG 126 (357)
T 2uvk_A 57 DQATSAFI-DGNLYVFGGIGKN-----SEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-HNGKAYVTGG 126 (357)
T ss_dssp BSCEEEEE-TTEEEEECCEEEC-----TTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE-ETTEEEEEEC
T ss_pred ccceEEEE-CCEEEEEcCCCCC-----CCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE-ECCEEEEEeC
Confidence 35666655 6899999832000 000011112222333333333333 2234577666 6889999994
No 106
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=52.70 E-value=1.4e+02 Score=27.53 Aligned_cols=260 Identities=13% Similarity=0.071 Sum_probs=119.7
Q ss_pred cEEEEEcCCC--eEEEE-EcCCCEEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeCC---CEEEEEEcCCCE
Q 014382 72 EIVSVTCGAD--HTTAY-SESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD---SHCLAVTVEGEV 145 (425)
Q Consensus 72 ~i~~i~~G~~--~~~~l-t~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~---~~~~~lt~~G~v 145 (425)
.|..++.... ..++. ..+ |.|++|-......... ......+..........|..++... .+.+.-..+|.|
T Consensus 130 ~v~~l~~~p~~~~~lat~~~d-g~V~vwd~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 206 (430)
T 2xyi_A 130 EVNRARYMPQNACVIATKTPS-SDVLVFDYTKHPSKPE--PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTI 206 (430)
T ss_dssp CCSEEEEETTEEEEEEEECSS-SCEEEEEGGGSCSSCC--TTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCE
T ss_pred cEEEEEECCCCCcEEEEECCC-CcEEEEECCCcccccC--ccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeE
Confidence 4555555543 23333 345 9999997543211000 0000111111111122455555432 366666778999
Q ss_pred EEEeCCCCCccCCCCCCCcccceeeeccCCceEEEEEeC---CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeee
Q 014382 146 QSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG---AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKV 222 (425)
Q Consensus 146 y~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G---~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v 222 (425)
..|-.+...... ....+..........|..++.. ....+.-..+|.|+.|-...... .. .+
T Consensus 207 ~vwd~~~~~~~~-----~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~---------~~--~~ 270 (430)
T 2xyi_A 207 CLWDINATPKEH-----RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT---------SK--PS 270 (430)
T ss_dssp EEEETTSCCBGG-----GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS---------SS--CS
T ss_pred EEEeCCCCCCCC-----ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC---------Cc--ce
Confidence 999765422110 0011111111123356667653 34445556789999997543210 01 11
Q ss_pred eeeecCCCeEEEEEecCc---eEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcEEEEecCCc---eEEE
Q 014382 223 ATVDLQREKMVMVACGWR---HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWR---HTMA 296 (425)
Q Consensus 223 ~~~~~~~~~i~~i~~g~~---~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G~~---~~~~ 296 (425)
..+......|..++...+ ..+.-..+|.|..|-.....+ |..........|..|+...+ ..+.
T Consensus 271 ~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-----------~~~~~~~h~~~v~~i~~sp~~~~~l~s 339 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-----------KLHSFESHKDEIFQVQWSPHNETILAS 339 (430)
T ss_dssp EEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-----------CSEEEECCSSCEEEEEECSSCTTEEEE
T ss_pred eEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-----------CeEEeecCCCCEEEEEECCCCCCEEEE
Confidence 111122345666665432 233445788888886543221 11111112234666665432 3444
Q ss_pred EeCCCcEEEeeeCCCCCcccCCCCCcccceEeec--CCCCcEEEEEcCCC---eeEEEeCCCCEEEeeCC
Q 014382 297 VTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKF--PLDQKVVQISCGWR---HTLAVTERQNVFSWGRG 361 (425)
Q Consensus 297 lt~~g~v~~wG~n~~gqLG~~~~~~~~~p~~i~~--~~~~~i~~i~~G~~---~~~~l~~~g~vy~wG~n 361 (425)
-..+|.|.+|-....+..-.........|..+.. .....|..++.... ..+....+|.|..|=..
T Consensus 340 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 340 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp EETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred EeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 5678999999755432110000000001122221 12345777766544 34445578999999754
No 107
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=51.56 E-value=1.5e+02 Score=27.42 Aligned_cols=191 Identities=12% Similarity=0.088 Sum_probs=87.0
Q ss_pred CCCeEEEeccC--CceEEE-EcCCeEEEEeCCCCCccCCCCCCCccCCeeecCC-CCCcEEEEEcC---CCeEEEEEcCC
Q 014382 18 FRPVLLISAGA--SHSVAL-LSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSAL-DGHEIVSVTCG---ADHTTAYSESC 90 (425)
Q Consensus 18 ~~~i~~i~~g~--~~~~~l-~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~-~~~~i~~i~~G---~~~~~~lt~~~ 90 (425)
..+|..|+... ...+|. ..||.|.+|-.... ..+..+... -...|..|+.. ....+.-..|
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~-----------~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D- 186 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIK-----------DKPTFIKGIGAGGSITGLKFNPLNTNQFYASSME- 186 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCC-----------SCCEEECCCSSSCCCCEEEECSSCTTEEEEECSS-
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCC-----------CceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC-
Confidence 45688888753 233433 58999999953211 111112111 11246666653 2222223345
Q ss_pred CEEEEEeCCCCCCCCCCCCCCcccceeeccc--CCCCE--EEEEeCCCEEEEEEcCCCEEEEeCCCCCccCCCCCCCccc
Q 014382 91 MQVYSWGWGDFGRLGHGNSSDLFTPLPIKAL--HSLRV--KQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLV 166 (425)
Q Consensus 91 g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~--~~~~i--~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~ 166 (425)
|.|..|--.. + ....+... ....+ ..++......+.-+.+|.|+.|-.... ++
T Consensus 187 ~~v~iwd~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~---------- 243 (435)
T 4e54_B 187 GTTRLQDFKG-N-----------ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-EL---------- 243 (435)
T ss_dssp SCEEEEETTS-C-----------EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BC----------
T ss_pred CEEEEeeccC-C-----------ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-ee----------
Confidence 8888884211 0 00111110 11112 233334455556677899999964211 00
Q ss_pred ceeeeccCCceEEEEEeCC---CeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEecC--ce
Q 014382 167 PQKLQAFEGVSIKMVAAGA---EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW--RH 241 (425)
Q Consensus 167 p~~~~~~~~~~i~~i~~G~---~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~g~--~~ 241 (425)
..+. .....|..|+... ...+.-..|+.|..|-......... +.........|..++-.. .+
T Consensus 244 -~~~~-~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~-----------~~~~~~h~~~v~~~~~spdg~~ 310 (435)
T 4e54_B 244 -WNLR-MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKAS-----------FLYSLPHRHPVNAACFSPDGAR 310 (435)
T ss_dssp -CCSB-CCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSC-----------CSBCCBCSSCEEECCBCTTSSE
T ss_pred -EEEe-cccceEEeeeecCCCceEEEEecCcceeeEEecccccccce-----------EEEeeeccccccceeECCCCCe
Confidence 0011 1123566666532 2233345688888885332111100 000000122455554332 34
Q ss_pred EEEEecCCCEEEecC
Q 014382 242 TISVSSSGRLYSYGW 256 (425)
Q Consensus 242 ~~~lt~~G~vy~~G~ 256 (425)
.+.-..||.|..|-.
T Consensus 311 l~s~~~D~~i~iwd~ 325 (435)
T 4e54_B 311 LLTTDQKSEIRVYSA 325 (435)
T ss_dssp EEEEESSSCEEEEES
T ss_pred eEEEcCCCEEEEEEC
Confidence 444567899888854
No 108
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=49.39 E-value=1.6e+02 Score=27.16 Aligned_cols=125 Identities=13% Similarity=0.088 Sum_probs=68.8
Q ss_pred EeccCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCC--eeecCCCCCcEEEEEcC-----CCeEEEEEcCCCEEEEE
Q 014382 24 ISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSP--TQLSALDGHEIVSVTCG-----ADHTTAYSESCMQVYSW 96 (425)
Q Consensus 24 i~~g~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p--~~v~~~~~~~i~~i~~G-----~~~~~~lt~~~g~v~~w 96 (425)
++....+.+++|+.|++|.+-...--..|. ...-.| ..++..++++|+.+..- ..+.+++|++ |.+.-.
T Consensus 53 ~~~t~d~ll~fT~~G~~~~~~~~eip~~~r---~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~-G~vKrt 128 (370)
T 3l6v_A 53 LVNTHDTLLTFTSSGKVFWLPVHQLPEAGS---NARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRN-GTVKKT 128 (370)
T ss_dssp EECTTCEEEEEETTSEEEEEEGGGSCBCCT---TSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETT-SEEEEE
T ss_pred EecCCCEEEEEeCCCeEEEEEHHHCcCCCc---ccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCC-CeEEEe
Confidence 344566688899999999776433211111 111111 11222345678887653 3467788888 988877
Q ss_pred eCCCCCCCCCCCCCCcccceeecccCCCCEEEE--EeCCCEEEEEEcCCCEEEEeCCCCCccCC
Q 014382 97 GWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQI--ACGDSHCLAVTVEGEVQSWGRNQNGQLGL 158 (425)
Q Consensus 97 G~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v--~~G~~~~~~lt~~G~vy~~G~n~~gqlg~ 158 (425)
--.++-... .. .-..+..-.+..++.+ ..+....+++|++|++.-+-.+....+|.
T Consensus 129 ~l~e~~~~~---~~---G~~ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR 186 (370)
T 3l6v_A 129 PLSEFAFRL---AR---GKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGR 186 (370)
T ss_dssp EGGGGCSCC---TT---CEESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred EHHHhhccc---CC---ceEEEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCC
Confidence 644442211 00 0011111123344433 34667899999999999887555444443
No 109
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=48.98 E-value=1.5e+02 Score=26.71 Aligned_cols=223 Identities=9% Similarity=-0.001 Sum_probs=110.4
Q ss_pred EEcCCCeEEEEEcCCCEEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeC-----CCEEEEEEcCCCEEEEeC
Q 014382 76 VTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG-----DSHCLAVTVEGEVQSWGR 150 (425)
Q Consensus 76 i~~G~~~~~~lt~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G-----~~~~~~lt~~G~vy~~G~ 150 (425)
++...++.+++|+. |++|..-..+.-..++... -......+....+.+|+.+..- ..+.+++|++|.+.-.--
T Consensus 46 ~~~t~d~ll~fT~~-Gr~~~~~~~elp~~~r~a~-G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l 123 (323)
T 1wp5_A 46 EMNTKDVLLLFTNK-GNYLYCPVHELPDIRWKDL-GQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTEL 123 (323)
T ss_dssp EEETTSEEEEEETT-SEEEEEEGGGSCBCCTTSC-CEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEG
T ss_pred EECCCCEEEEEECC-CEEEEEEHHHCcCCCCCCC-CcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEH
Confidence 45567788889988 9999997665433332111 0001111222245677766443 346888999998887754
Q ss_pred CCCCccCCCCCCCcccce-eeeccCCceEEE--EEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeec
Q 014382 151 NQNGQLGLGTTEDSLVPQ-KLQAFEGVSIKM--VAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDL 227 (425)
Q Consensus 151 n~~gqlg~~~~~~~~~p~-~~~~~~~~~i~~--i~~G~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~ 227 (425)
..+-.... .... .+...++..++. +..+.++.++++++|+++-+-..+.-..|.... ..+.-.+.
T Consensus 124 ~e~~~~~r------~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~-----GV~~i~L~- 191 (323)
T 1wp5_A 124 KHYKAQRY------SKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAA-----GVKGMNLK- 191 (323)
T ss_dssp GGGCCSCC------SSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCC-----CEECCCCC-
T ss_pred HHhhhccc------cCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCc-----CEEEEEeC-
Confidence 33211110 0000 011112233433 334678899999999999887665444433111 11111111
Q ss_pred CCCeEEEEEec--Cc-eEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcEEE--EecCCceEEEEeCCCc
Q 014382 228 QREKMVMVACG--WR-HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQ--ISGGWRHTMAVTSDGK 302 (425)
Q Consensus 228 ~~~~i~~i~~g--~~-~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~--i~~G~~~~~~lt~~g~ 302 (425)
.+..|+.+..- .. ..++++++|..-..-..++..-+.+. .-...+...+. .+..+.. +..+.+..++++++|+
T Consensus 192 ~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~-kGv~~~~~~~~-~~~~l~~~~~v~~~~~i~~it~~g~ 269 (323)
T 1wp5_A 192 EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAK-RGVVILRELKA-NPHRISGFVVAQDSDTIYLQTEKSF 269 (323)
T ss_dssp TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTS-CCEECSCCCSS-SCCCEEEEEEECTTCEEEEEETTSC
T ss_pred CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCC-CCEECeeecCC-CCceEEEEEEeCCCCeEEEEeCCCe
Confidence 23456655331 22 56777777754332222221111110 00111111111 1112332 2345678889999999
Q ss_pred EEEeeeCCCCCc
Q 014382 303 LYGWGWNKFGQV 314 (425)
Q Consensus 303 v~~wG~n~~gqL 314 (425)
+.-.-.+.....
T Consensus 270 ~ir~~~~~i~~~ 281 (323)
T 1wp5_A 270 IETIKVGDIRFS 281 (323)
T ss_dssp EEEEEGGGSCBC
T ss_pred EEEEEhhhcCcc
Confidence 887655544333
No 110
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=48.80 E-value=1.4e+02 Score=26.22 Aligned_cols=209 Identities=12% Similarity=0.085 Sum_probs=96.2
Q ss_pred CeeecCCCCCcEEEEEcCCCe--EEEEEcCCCEEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeC--CCEEE
Q 014382 62 PTQLSALDGHEIVSVTCGADH--TTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DSHCL 137 (425)
Q Consensus 62 p~~v~~~~~~~i~~i~~G~~~--~~~lt~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G--~~~~~ 137 (425)
+..+.... ..|..++..... .+.-..+ |.|+.|-..... ....+. .....|..++.. ..+.+
T Consensus 25 ~~~l~~h~-~~v~~~~~s~~~~~l~~~~~d-g~i~vwd~~~~~-----------~~~~~~-~h~~~v~~~~~~~~~~~l~ 90 (369)
T 3zwl_B 25 AIKLTGHE-RPLTQVKYNKEGDLLFSCSKD-SSASVWYSLNGE-----------RLGTLD-GHTGTIWSIDVDCFTKYCV 90 (369)
T ss_dssp EEEEECCS-SCEEEEEECTTSCEEEEEESS-SCEEEEETTTCC-----------EEEEEC-CCSSCEEEEEECTTSSEEE
T ss_pred cEEEEEee-ceEEEEEEcCCCCEEEEEeCC-CEEEEEeCCCch-----------hhhhhh-hcCCcEEEEEEcCCCCEEE
Confidence 33444333 357777765443 3333456 899999532211 111111 123357777664 35666
Q ss_pred EEEcCCCEEEEeCCCCCccCCCCCCCcccceeeeccCCceEEEEEeCC--CeEEEEecC-----CcEEEeeCCCCCCCCC
Q 014382 138 AVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA--EHSVAVAED-----GELYGWGWGRYGNLGL 210 (425)
Q Consensus 138 ~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G~--~~~~~L~~~-----g~vy~~G~n~~gqlg~ 210 (425)
....+|.|+.|-...... ...+. ....+..++... ...++...+ |.|+.|-.........
T Consensus 91 s~~~dg~i~iwd~~~~~~-----------~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~ 157 (369)
T 3zwl_B 91 TGSADYSIKLWDVSNGQC-----------VATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHE 157 (369)
T ss_dssp EEETTTEEEEEETTTCCE-----------EEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCC
T ss_pred EEeCCCeEEEEECCCCcE-----------EEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCcccee
Confidence 677899999996533211 01111 223455554433 334444455 7888886433221110
Q ss_pred CCCCCCcceeeeeeeecCCCeEEEEEec--CceEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcEEEEe
Q 014382 211 GDRNDRLIPEKVATVDLQREKMVMVACG--WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQIS 288 (425)
Q Consensus 211 ~~~~~~~~p~~v~~~~~~~~~i~~i~~g--~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~ 288 (425)
-..........+.. ......+..++.. ....++-+.+|.|+.|-....+ .+..........|..++
T Consensus 158 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~~~v~~~~ 225 (369)
T 3zwl_B 158 LTKVSEEPIHKIIT-HEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY-----------EYVDSIDLHEKSISDMQ 225 (369)
T ss_dssp EEEECSSCSEEEEC-CTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT-----------EEEEEEECCSSCEEEEE
T ss_pred ecccccceeeeccC-CcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc-----------EeEEEEecCCCceeEEE
Confidence 00000000001110 0011144444433 3355556678888888543211 11111111223466655
Q ss_pred cC--CceEEEEeCCCcEEEeeeC
Q 014382 289 GG--WRHTMAVTSDGKLYGWGWN 309 (425)
Q Consensus 289 ~G--~~~~~~lt~~g~v~~wG~n 309 (425)
.. ....+.-..+|.|+.|-..
T Consensus 226 ~~~~~~~l~~~~~d~~i~v~d~~ 248 (369)
T 3zwl_B 226 FSPDLTYFITSSRDTNSFLVDVS 248 (369)
T ss_dssp ECTTSSEEEEEETTSEEEEEETT
T ss_pred ECCCCCEEEEecCCceEEEEECC
Confidence 43 3344555678888888543
No 111
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=48.42 E-value=1.4e+02 Score=25.98 Aligned_cols=164 Identities=15% Similarity=0.154 Sum_probs=78.0
Q ss_pred CCCEEEEEeC-CCEEEEEEcCCC-EEEEeCCCCCccCCCCCCCcccceeeeccCCceEEEEEeCCCeEEEEecCCc-EEE
Q 014382 123 SLRVKQIACG-DSHCLAVTVEGE-VQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGE-LYG 199 (425)
Q Consensus 123 ~~~i~~v~~G-~~~~~~lt~~G~-vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~L~~~g~-vy~ 199 (425)
+-++.-..++ ....++++.+|+ ++.++.... + ......|..+....+..+.-.........+++.+|+ +|.
T Consensus 87 dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~--~----~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w~ 160 (276)
T 3no2_A 87 DGNALVAWCGHPSTILEVNMKGEVLSKTEFETG--I----ERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNS 160 (276)
T ss_dssp TSCEEEEEESTTEEEEEECTTSCEEEEEEECCS--C----SSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCEEEE
T ss_pred CCCEEEEecCCCCEEEEEeCCCCEEEEEeccCC--C----CcccccccCceECCCCCEEEEecCCCEEEEECCCCCEEEE
Confidence 4455555566 566777788887 466653211 0 011112222333333445434445566677777775 455
Q ss_pred eeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEecCceEEEEecC-CC-EEEecCCCCCcCCCCCCCCcccceeec
Q 014382 200 WGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSS-GR-LYSYGWSKYGQLGHGDFKDHLVPCQLE 277 (425)
Q Consensus 200 ~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~g~~~~~~lt~~-G~-vy~~G~n~~gqlg~~~~~~~~~p~~v~ 277 (425)
++.. ..|..+..+ .+.++.-........++++.+ |+ +|.++.+...- .....|.-+.
T Consensus 161 ~~~~-------------~~~~~~~~~--~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~------~~l~~~~~~~ 219 (276)
T 3no2_A 161 VKLS-------------GTPFSSAFL--DNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEG------VQLFFVAQLF 219 (276)
T ss_dssp EECS-------------SCCCEEEEC--TTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBS------CCCSEEEEEE
T ss_pred EECC-------------CCccceeEc--CCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCC------ccccccccce
Confidence 5531 011122221 233444333334456677766 76 56666332110 0112233333
Q ss_pred cccCCcEEEEec--C---------CceEEEEeCCCcEEEeeeCCCCCcc
Q 014382 278 ALRESFISQISG--G---------WRHTMAVTSDGKLYGWGWNKFGQVG 315 (425)
Q Consensus 278 ~~~~~~i~~i~~--G---------~~~~~~lt~~g~v~~wG~n~~gqLG 315 (425)
.+.+..+. |+. | ....+.++.+|+| +|-.+...+.|
T Consensus 220 ~~~~G~i~-v~~~~g~~~~~~~~~~~~~~~~~~~g~~-~W~~~~~~~~~ 266 (276)
T 3no2_A 220 PLQNGGLY-ICNWQGHDREAGKGKHPQLVEIDSEGKV-VWQLNDKVKFG 266 (276)
T ss_dssp ECTTSCEE-EEEECTTCTTGGGSCCCSEEEECTTSBE-EEEECCTTTSC
T ss_pred EcCCCCEE-EEeccCccccccccCCceEEEECCCCCE-EEEecCccccc
Confidence 33333333 222 2 3357778888887 57666655554
No 112
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=48.30 E-value=1.9e+02 Score=27.65 Aligned_cols=221 Identities=19% Similarity=0.236 Sum_probs=105.7
Q ss_pred cEEEEEcCCC--eEEEEEcCCCEEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeCC--CEEEEEEcCCCEEE
Q 014382 72 EIVSVTCGAD--HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--SHCLAVTVEGEVQS 147 (425)
Q Consensus 72 ~i~~i~~G~~--~~~~lt~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~--~~~~~lt~~G~vy~ 147 (425)
.|..++.... ..+....+ +.|+.|-.+ +++ ...+.. ....|..++... ...+....+|.|..
T Consensus 264 ~v~~v~~~~d~~~l~~~~~d-~~i~~w~~~--~~~----------~~~~~~-h~~~v~~~~~~~~~~~l~t~~~d~~i~~ 329 (577)
T 2ymu_A 264 SVNGVAFRPDGQTIASASDD-KTVKLWNRN--GQL----------LQTLTG-HSSSVWGVAFSPDGQTIASASDDKTVKL 329 (577)
T ss_dssp CEEEEEECTTSSEEEEEETT-SCEEEEETT--SCE----------EEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CEEEEEEcCCCCEEEEEeCC-CEEEEEeCC--CcE----------EEEEec-CCCCeEEEEECCCCCEEEEEeCCCeEEE
Confidence 5666665433 33344556 889998422 110 011111 123566666543 44555667899999
Q ss_pred EeCCCCCccCCCCCCCcccceeeeccCCceEEEEEeC--CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeee
Q 014382 148 WGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATV 225 (425)
Q Consensus 148 ~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G--~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~ 225 (425)
|-.+.. ....+.. ....+..++.. ..+.+.-.++|.|..|-.+ + ..+..+
T Consensus 330 w~~~~~------------~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~--~-------------~~~~~~ 381 (577)
T 2ymu_A 330 WNRNGQ------------HLQTLTG-HSSSVWGVAFSPDGQTIASASDDKTVKLWNRN--G-------------QLLQTL 381 (577)
T ss_dssp EETTSC------------EEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETT--C-------------CEEEEE
T ss_pred EeCCCC------------eeEEEeC-CCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC--C-------------CEEEEe
Confidence 954321 0111111 12345555443 3344555677888887421 1 112222
Q ss_pred ecCCCeEEEEEecC--ceEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcEEEEecCC--ceEEEEeCCC
Q 014382 226 DLQREKMVMVACGW--RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGW--RHTMAVTSDG 301 (425)
Q Consensus 226 ~~~~~~i~~i~~g~--~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~~~~~lt~~g 301 (425)
......|..++... .+.+.-..++.|+.|-.+ +++ ...+.. ....|..++... ...+.-..++
T Consensus 382 ~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~--~~~----------~~~~~~-~~~~v~~~~~s~d~~~l~~~~~d~ 448 (577)
T 2ymu_A 382 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQL----------LQTLTG-HSSSVWGVAFSPDDQTIASASDDK 448 (577)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT--CCE----------EEEEEC-CSSCEEEEEECTTSSEEEEEETTS
T ss_pred cCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC--CCE----------EEEecC-CCCCeEEEEECCCCCEEEEEcCCC
Confidence 22234566665543 344445677888888421 111 111111 123365555432 3334446788
Q ss_pred cEEEeeeCCCCCcccCCCCCcccceEeecCCCCcEEEEEcCCCeeEE--EeCCCCEEEeeC
Q 014382 302 KLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLA--VTERQNVFSWGR 360 (425)
Q Consensus 302 ~v~~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~--l~~~g~vy~wG~ 360 (425)
.|..|-.+ +++ ..........|..++...+..++ -..|+.|+.|-.
T Consensus 449 ~v~~w~~~--~~~-----------~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~ 496 (577)
T 2ymu_A 449 TVKLWNRN--GQL-----------LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 496 (577)
T ss_dssp EEEEEETT--SCE-----------EEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET
T ss_pred EEEEEECC--CCE-----------EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC
Confidence 88888432 111 11111223456666654433332 347888988863
No 113
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A
Probab=47.97 E-value=93 Score=23.98 Aligned_cols=105 Identities=11% Similarity=0.136 Sum_probs=54.1
Q ss_pred EEEEEeCCCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeeccCCceEEEE-EeCCCeEEEEecCCcEEEeeCCC
Q 014382 126 VKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMV-AAGAEHSVAVAEDGELYGWGWGR 204 (425)
Q Consensus 126 i~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i-~~G~~~~~~L~~~g~vy~~G~n~ 204 (425)
+.--.|...+-+-+..||+|-.-.... .+.... .+.+... .++.| ..-..+.+++..+|+||.--.
T Consensus 8 ~~~~~~~~g~~L~I~~dG~V~Gt~~~~---------~~~s~l-~~~~v~~-G~V~I~g~~sg~yL~m~~~G~v~Gs~~-- 74 (132)
T 3q7x_A 8 VLLRSTETGQFLRINPDGTVDGTRDRS---------DPGIQF-QISPEGN-GEVLLRSTETGQFLRINPDGTVDGTRD-- 74 (132)
T ss_dssp EEEEETTTCCEEEECTTSBEEEECCTT---------CGGGCE-EEEEEET-TEEEEEETTTCCEEEECTTSBEEEECC--
T ss_pred heeeeccCcEEEEECCCCcEEeecCCC---------CCCcEE-EEEeccc-CEEEEEEEcccEEEEECCCCCEeeccC--
Confidence 444456677778888899998664321 011111 1111111 23444 344556788899999996421
Q ss_pred CCCCCCCCCCCCcceeeeeeeecCCCeEEEEE-ecCceEEEEecCCCEEEe
Q 014382 205 YGNLGLGDRNDRLIPEKVATVDLQREKMVMVA-CGWRHTISVSSSGRLYSY 254 (425)
Q Consensus 205 ~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~-~g~~~~~~lt~~G~vy~~ 254 (425)
.........+.... ...+.+. .-....++++.+|++|.-
T Consensus 75 --------~s~ec~flE~~~~~---~g~v~ikg~~sg~YLamnk~G~lygs 114 (132)
T 3q7x_A 75 --------RSDPGIQFQISPEG---NGEVLLRSTETGQFLRINPDGTVDGT 114 (132)
T ss_dssp ---------CCGGGCEEEEEEE---TTEEEEEETTTCCEEEECTTSBEEEE
T ss_pred --------CCCCceeEEEEeec---CcEEEEEeccCCeEEEECCCCcCcCC
Confidence 11112222222222 1223332 223347899999999973
No 114
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=46.15 E-value=1.7e+02 Score=26.55 Aligned_cols=238 Identities=13% Similarity=0.146 Sum_probs=105.6
Q ss_pred EEEEEcCCC--eEEEEEcCCCEEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeC--CCEEEEEEcCCCEEEE
Q 014382 73 IVSVTCGAD--HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVEGEVQSW 148 (425)
Q Consensus 73 i~~i~~G~~--~~~~lt~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G--~~~~~~lt~~G~vy~~ 148 (425)
|..++...+ ..+.-..| +.|..|-.... .......-....|..++.. ..+.+.-..||.|..|
T Consensus 126 v~~v~~s~dg~~l~s~~~d-~~i~iwd~~~~------------~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iw 192 (393)
T 1erj_A 126 IRSVCFSPDGKFLATGAED-RLIRIWDIENR------------KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW 192 (393)
T ss_dssp EEEEEECTTSSEEEEEETT-SCEEEEETTTT------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EEEEEECCCCCEEEEEcCC-CeEEEEECCCC------------cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEE
Confidence 666665533 33333456 88888853211 1111111112356666654 3455666778999999
Q ss_pred eCCCCCccCCCCCCCcccceeeeccCCceEEEEEeC---CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeee--
Q 014382 149 GRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG---AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVA-- 223 (425)
Q Consensus 149 G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G---~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~-- 223 (425)
-... +++ ...+.. ...+..++.. ....+.-..||.|..|-... +++ ...+.
T Consensus 193 d~~~-~~~----------~~~~~~--~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~-~~~----------~~~~~~~ 248 (393)
T 1erj_A 193 DLRT-GQC----------SLTLSI--EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET-GFL----------VERLDSE 248 (393)
T ss_dssp ETTT-TEE----------EEEEEC--SSCEEEEEECSTTCCEEEEEETTSCEEEEETTT-CCE----------EEEEC--
T ss_pred ECCC-Cee----------EEEEEc--CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCC-CcE----------EEeeccc
Confidence 5432 110 011111 1234444443 23444556788888885322 110 00010
Q ss_pred --eeecCCCeEEEEEecC--ceEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeecc-ccCCcEEEEecCCc--eEEE
Q 014382 224 --TVDLQREKMVMVACGW--RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEA-LRESFISQISGGWR--HTMA 296 (425)
Q Consensus 224 --~~~~~~~~i~~i~~g~--~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~-~~~~~i~~i~~G~~--~~~~ 296 (425)
........|..++... .+.+.-..||.|..|-............... ....... -....|..++...+ ..+.
T Consensus 249 ~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s 327 (393)
T 1erj_A 249 NESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS-GTCEVTYIGHKDFVLSVATTQNDEYILS 327 (393)
T ss_dssp ----CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----------------CEEEEEECCSSCEEEEEECGGGCEEEE
T ss_pred ccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCC-CcceEEEecccCcEEEEEECCCCCEEEE
Confidence 0011123466665543 3444455788888886433221110000000 0000000 01123555554433 3444
Q ss_pred EeCCCcEEEeeeCCCCCcccCCCCCcccceEeecCCCCcEEEEEcCC-------CeeE-EEeCCCCEEEeeC
Q 014382 297 VTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGW-------RHTL-AVTERQNVFSWGR 360 (425)
Q Consensus 297 lt~~g~v~~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~-------~~~~-~l~~~g~vy~wG~ 360 (425)
-..+|.|+.|-.... .+...-......|..++... ...+ .-..||.|..|-.
T Consensus 328 gs~D~~v~iwd~~~~------------~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~ 387 (393)
T 1erj_A 328 GSKDRGVLFWDKKSG------------NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 387 (393)
T ss_dssp EETTSEEEEEETTTC------------CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred EeCCCeEEEEECCCC------------eEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcc
Confidence 567889999954321 12221112234566666532 2223 3347889998853
No 115
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=45.84 E-value=1.5e+02 Score=25.71 Aligned_cols=158 Identities=12% Similarity=0.065 Sum_probs=83.6
Q ss_pred EEEEEcCCCEEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEE--EeCCCEEEEEEcCCCEEEEeCCCCCccCCCC
Q 014382 83 TTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQI--ACGDSHCLAVTVEGEVQSWGRNQNGQLGLGT 160 (425)
Q Consensus 83 ~~~lt~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v--~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~ 160 (425)
.++++.+ |.+-......++. ..+..-.+..+..+ +...++.+++|+.|++|..-....... ..
T Consensus 5 ~v~lT~~-G~iKr~~~~~~~~------------~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~-r~- 69 (256)
T 1zvt_A 5 TIVLSQM-GWVRSAKGHDIDA------------PGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA-RG- 69 (256)
T ss_dssp EEEEETT-SEEEEEESSCCCS------------TTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCS-SS-
T ss_pred EEEEeCC-CEEEEeeCCcCCc------------eeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCc-CC-
Confidence 4567777 8776554322210 11111223445444 445678999999999999875443111 11
Q ss_pred CCCcccceeeeccCCceEEEEEeC--CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEE-E-
Q 014382 161 TEDSLVPQKLQAFEGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMV-A- 236 (425)
Q Consensus 161 ~~~~~~p~~~~~~~~~~i~~i~~G--~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i-~- 236 (425)
.-......+...++++|+.+... ..+.+++|++|.+.-.-..++-... ..-..+..+. .+..++.+ .
T Consensus 70 -~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~-------r~G~~~i~L~-~~d~lv~~~~~ 140 (256)
T 1zvt_A 70 -QGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARN-------RAGKALITLP-ENAHVMPPVVI 140 (256)
T ss_dssp -CCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCS-------TTCEECBCCC-TTCCBCCCEEC
T ss_pred -CCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccC-------cCceEEEEEC-CCCEEEEEEEe
Confidence 11111112333346678877653 4457888999988876544431110 0011111111 12233332 2
Q ss_pred -ecCceEEEEecCCCEEEecCCCCCcCCC
Q 014382 237 -CGWRHTISVSSSGRLYSYGWSKYGQLGH 264 (425)
Q Consensus 237 -~g~~~~~~lt~~G~vy~~G~n~~gqlg~ 264 (425)
.+.++.+++|++|++..+-.++...+|.
T Consensus 141 ~~~~~~i~l~T~~G~~lrf~~~ei~~~gR 169 (256)
T 1zvt_A 141 EDASDMLLAITQAGRMLMFPVSDLPQLSK 169 (256)
T ss_dssp CCTTCEEEEEETTSEEEEEEGGGSCBCSS
T ss_pred cCCCCEEEEEcCCCeEEEEEHHHCCCcCc
Confidence 2567899999999988877655544443
No 116
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=43.39 E-value=1.8e+02 Score=25.99 Aligned_cols=192 Identities=8% Similarity=0.033 Sum_probs=98.0
Q ss_pred CcEEEEEcCCC---eEEEEEcCCCEEEEEeCCCCCCCCCCCCCCcccceeecc-cCCCCEEEEEeCC---CEEEEEEcCC
Q 014382 71 HEIVSVTCGAD---HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKA-LHSLRVKQIACGD---SHCLAVTVEG 143 (425)
Q Consensus 71 ~~i~~i~~G~~---~~~~lt~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~-~~~~~i~~v~~G~---~~~~~lt~~G 143 (425)
..|..++.... ..+.-..| |.|..|-..... ....+.. -....|..++... ...+....+|
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 141 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKG-GDIILWDYDVQN-----------KTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG 141 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBT-SCEEEEETTSTT-----------CEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred CCEEEEEECCCCCCEEEEEcCC-CeEEEEeCCCcc-----------cceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence 35777776544 34444455 899999543211 1111111 1234677777754 4555567789
Q ss_pred CEEEEeCCCCCccCCCCCCCcccceeeeccC--CceEEEEE--eCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcce
Q 014382 144 EVQSWGRNQNGQLGLGTTEDSLVPQKLQAFE--GVSIKMVA--AGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIP 219 (425)
Q Consensus 144 ~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~--~~~i~~i~--~G~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p 219 (425)
.|..|-... .. ...+.... ...|..++ ......+.-..+|.|+.|-.. +
T Consensus 142 ~i~iwd~~~-~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~------------- 194 (383)
T 3ei3_B 142 ATTLRDFSG-SV-----------IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD--G------------- 194 (383)
T ss_dssp EEEEEETTS-CE-----------EEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT--S-------------
T ss_pred EEEEEECCC-Cc-----------eEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC--C-------------
Confidence 999996532 00 11111111 12344443 334455556778889988631 0
Q ss_pred eeeeeeecCCCeEEEEEecCc---eEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcEEEEecCC---ce
Q 014382 220 EKVATVDLQREKMVMVACGWR---HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGW---RH 293 (425)
Q Consensus 220 ~~v~~~~~~~~~i~~i~~g~~---~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G~---~~ 293 (425)
..+..+......|..++...+ ..+.-..||.|..|-...... ...+.... -....|..++... ..
T Consensus 195 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--------~~~~~~~~-~~~~~v~~~~~s~~~~~~ 265 (383)
T 3ei3_B 195 HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKD--------KNSYIAEM-PHEKPVNAAYFNPTDSTK 265 (383)
T ss_dssp CEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCS--------TTCEEEEE-ECSSCEEEEEECTTTSCE
T ss_pred CEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCc--------ccceEEEe-cCCCceEEEEEcCCCCCE
Confidence 122222223446777666544 344456788888885432110 00111111 1223466666543 45
Q ss_pred EEEEeCCCcEEEeeeCC
Q 014382 294 TMAVTSDGKLYGWGWNK 310 (425)
Q Consensus 294 ~~~lt~~g~v~~wG~n~ 310 (425)
.+.-..+|.|..|-...
T Consensus 266 l~~~~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 266 LLTTDQRNEIRVYSSYD 282 (383)
T ss_dssp EEEEESSSEEEEEETTB
T ss_pred EEEEcCCCcEEEEECCC
Confidence 55567789999996543
No 117
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=43.07 E-value=1.7e+02 Score=25.45 Aligned_cols=94 Identities=10% Similarity=0.134 Sum_probs=46.1
Q ss_pred EEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeeccCCceEEEEEeCCC--eEEEEecCCcEEEeeCCCCCCCCCCCC
Q 014382 136 CLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAE--HSVAVAEDGELYGWGWGRYGNLGLGDR 213 (425)
Q Consensus 136 ~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G~~--~~~~L~~~g~vy~~G~n~~gqlg~~~~ 213 (425)
.+.-..++.|..|-..... ....+.. ....|..++...+ ..+.-..||.|..|-....
T Consensus 188 ~~s~~~d~~i~i~d~~~~~-----------~~~~~~~-h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~-------- 247 (340)
T 4aow_A 188 IVSCGWDKLVKVWNLANCK-----------LKTNHIG-HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG-------- 247 (340)
T ss_dssp EEEEETTSCEEEEETTTTE-----------EEEEECC-CSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT--------
T ss_pred EEEEcCCCEEEEEECCCCc-----------eeeEecC-CCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC--------
Confidence 3445578889999543210 0011111 1235666655433 3344457888888853321
Q ss_pred CCCcceeeeeeeecCCCeEEEEEecC-ceEEEEecCCCEEEecC
Q 014382 214 NDRLIPEKVATVDLQREKMVMVACGW-RHTISVSSSGRLYSYGW 256 (425)
Q Consensus 214 ~~~~~p~~v~~~~~~~~~i~~i~~g~-~~~~~lt~~G~vy~~G~ 256 (425)
..+..+.. ...|..++... .+.++...++.|+.|-.
T Consensus 248 ------~~~~~~~~-~~~v~~~~~~~~~~~~~~~~d~~i~iwd~ 284 (340)
T 4aow_A 248 ------KHLYTLDG-GDIINALCFSPNRYWLCAATGPSIKIWDL 284 (340)
T ss_dssp ------EEEEEEEC-SSCEEEEEECSSSSEEEEEETTEEEEEET
T ss_pred ------ceeeeecC-CceEEeeecCCCCceeeccCCCEEEEEEC
Confidence 11222221 23454444432 34455567888888853
No 118
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=39.91 E-value=2e+02 Score=25.62 Aligned_cols=194 Identities=8% Similarity=0.038 Sum_probs=100.0
Q ss_pred CCCCeEEEeccCCc---eEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecC-CCCCcEEEEEcCC---CeEEEEEcC
Q 014382 17 PFRPVLLISAGASH---SVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSA-LDGHEIVSVTCGA---DHTTAYSES 89 (425)
Q Consensus 17 ~~~~i~~i~~g~~~---~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~-~~~~~i~~i~~G~---~~~~~lt~~ 89 (425)
-...|..++..... .+.-..||.|.+|-.... .....+.. -....|..++... ...+....|
T Consensus 72 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-----------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 140 (383)
T 3ei3_B 72 FDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ-----------NKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR 140 (383)
T ss_dssp CSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTST-----------TCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred CCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCc-----------ccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence 34567777765543 444457888988865421 11111211 1224677777654 334444556
Q ss_pred CCEEEEEeCCCCCCCCCCCCCCcccceeecccC--CCCEEEEEe--CCCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcc
Q 014382 90 CMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALH--SLRVKQIAC--GDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSL 165 (425)
Q Consensus 90 ~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~--~~~i~~v~~--G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~ 165 (425)
+.|..|-... . ....+.... ...|..++. .....+.-+.+|.|+.|-.. ++
T Consensus 141 -~~i~iwd~~~-~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~---------- 195 (383)
T 3ei3_B 141 -GATTLRDFSG-S-----------VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD--GH---------- 195 (383)
T ss_dssp -TEEEEEETTS-C-----------EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT--SC----------
T ss_pred -CEEEEEECCC-C-----------ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC--CC----------
Confidence 9999995431 0 111111111 123555544 34566667788999999642 10
Q ss_pred cceeeeccCCceEEEEEeCCC---eEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEecC---
Q 014382 166 VPQKLQAFEGVSIKMVAAGAE---HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW--- 239 (425)
Q Consensus 166 ~p~~~~~~~~~~i~~i~~G~~---~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~g~--- 239 (425)
....+. .....|..++...+ ..+.-..||.|..|-...... .. ..+..+. ....|..++...
T Consensus 196 ~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--------~~--~~~~~~~-~~~~v~~~~~s~~~~ 263 (383)
T 3ei3_B 196 EIFKEK-LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKD--------KN--SYIAEMP-HEKPVNAAYFNPTDS 263 (383)
T ss_dssp EEEEEE-CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCS--------TT--CEEEEEE-CSSCEEEEEECTTTS
T ss_pred EEEEec-cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCc--------cc--ceEEEec-CCCceEEEEEcCCCC
Confidence 011111 12235666665444 445556788899886432110 00 1111111 234677776544
Q ss_pred ceEEEEecCCCEEEecCCC
Q 014382 240 RHTISVSSSGRLYSYGWSK 258 (425)
Q Consensus 240 ~~~~~lt~~G~vy~~G~n~ 258 (425)
...+....||.|+.|-...
T Consensus 264 ~~l~~~~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 264 TKLLTTDQRNEIRVYSSYD 282 (383)
T ss_dssp CEEEEEESSSEEEEEETTB
T ss_pred CEEEEEcCCCcEEEEECCC
Confidence 4555566788999886543
No 119
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=38.00 E-value=2e+02 Score=25.05 Aligned_cols=149 Identities=16% Similarity=0.140 Sum_probs=81.6
Q ss_pred CCCCeEEEeccCC-----ceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcCCC--eEEEEEcC
Q 014382 17 PFRPVLLISAGAS-----HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD--HTTAYSES 89 (425)
Q Consensus 17 ~~~~i~~i~~g~~-----~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~--~~~~lt~~ 89 (425)
....|..++.... ..+.-..||.|.+|-....++ .....+... ...|..++.... ..+....|
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~---------~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---------TIPKAQQMH-TGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC---------EEEEEEEEC-SSCEEEEEECTTSSEEEEEETT
T ss_pred CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc---------eeEEEeccc-cCCEEEEEECcCCCEEEEEcCC
Confidence 3467888887765 233334788999997543211 111222222 235777766433 44455566
Q ss_pred CCEEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEe--CC--CEEEEEEcCCCEEEEeCCCCCccCCCCCCCcc
Q 014382 90 CMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIAC--GD--SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSL 165 (425)
Q Consensus 90 ~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~--G~--~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~ 165 (425)
|.|..|-.... ...... .....|..+.. .. .+.+.-..+|.|+.|-.....
T Consensus 108 -g~v~iwd~~~~------------~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----------- 162 (368)
T 3mmy_A 108 -KTAKMWDLSSN------------QAIQIA-QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN----------- 162 (368)
T ss_dssp -SEEEEEETTTT------------EEEEEE-ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS-----------
T ss_pred -CcEEEEEcCCC------------Cceeec-cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc-----------
Confidence 99999954321 111111 12346777775 33 335555678999999543211
Q ss_pred cceeeeccCCceEEEEEeCCCeEEEEecCCcEEEeeC
Q 014382 166 VPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGW 202 (425)
Q Consensus 166 ~p~~~~~~~~~~i~~i~~G~~~~~~L~~~g~vy~~G~ 202 (425)
....+.. ...+..+..-....++...++.+..|-.
T Consensus 163 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 197 (368)
T 3mmy_A 163 PMMVLQL--PERCYCADVIYPMAVVATAERGLIVYQL 197 (368)
T ss_dssp CSEEEEC--SSCEEEEEEETTEEEEEEGGGCEEEEEC
T ss_pred EEEEEec--CCCceEEEecCCeeEEEeCCCcEEEEEe
Confidence 0111111 1245555555667788888899998864
No 120
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=35.12 E-value=3.7e+02 Score=27.21 Aligned_cols=17 Identities=18% Similarity=0.176 Sum_probs=12.6
Q ss_pred eEEEEeCCCcEEEeeeC
Q 014382 293 HTMAVTSDGKLYGWGWN 309 (425)
Q Consensus 293 ~~~~lt~~g~v~~wG~n 309 (425)
++++.+.+|++|.=|.+
T Consensus 631 ~~~~~~~~G~l~~g~~~ 647 (781)
T 3v9f_A 631 GCVTKDHNGLIYFGSIN 647 (781)
T ss_dssp EEEEECTTSCEEEEETT
T ss_pred CceEECCCCEEEEECCC
Confidence 46777889999976544
No 121
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=34.78 E-value=3.3e+02 Score=27.61 Aligned_cols=124 Identities=13% Similarity=0.117 Sum_probs=68.4
Q ss_pred EecCceEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcEEEEecC--CceEEEEeCCCcEEEeeeCCCCC
Q 014382 236 ACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGG--WRHTMAVTSDGKLYGWGWNKFGQ 313 (425)
Q Consensus 236 ~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~~~~~lt~~g~v~~wG~n~~gq 313 (425)
+...++.+++|+.|++|..-..+--. +...-......+..-.+++|..+... ..+.++.|++|.+.-.-...+-
T Consensus 511 ~~t~d~ll~ft~~Gr~y~~~~~~lP~---~~~~G~~i~~ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~~- 586 (716)
T 1zvu_A 511 GKSNQPVVFVDSTGRSYAIDPITLPS---ARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLV- 586 (716)
T ss_dssp CCSSSCEEEEETTSEEEEECTTTSCC---CC---CBSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGC-
T ss_pred ecCCCEEEEEecCCcEEEEEeeeccc---ccccCeeHHhccCCCCCCeEEEEEEecCCceEEEEeCCceEEEecHHHhc-
Confidence 34456778999999999876543222 11111122222333345678877654 3456677889988765433221
Q ss_pred cccCCCCCcccceEeecCCCCcEEE---EEcCCCeeEEEeCCCCEEEeeCCCCCccCC
Q 014382 314 VGVGDNVDHCSPVQVKFPLDQKVVQ---ISCGWRHTLAVTERQNVFSWGRGTNGQLGH 368 (425)
Q Consensus 314 LG~~~~~~~~~p~~i~~~~~~~i~~---i~~G~~~~~~l~~~g~vy~wG~n~~gqLG~ 368 (425)
......-..+.+..+..++. +..+..+.++++++|++..|-..+--.+|.
T Consensus 587 -----~~~~~g~~ai~L~~~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~~~~v~~~gr 639 (716)
T 1zvu_A 587 -----ARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 639 (716)
T ss_dssp -----CCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEESTTSCBCSS
T ss_pred -----ccCccceEEEeeCCCCEEEEEEEecCCCCEEEEEeCCCeEEEEEHHHCCccCc
Confidence 11111122233333333332 224677889999999999998766544443
No 122
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A
Probab=34.62 E-value=1.6e+02 Score=22.69 Aligned_cols=103 Identities=14% Similarity=0.180 Sum_probs=54.7
Q ss_pred EEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEe-cCceEEEEecCCCEEEecC
Q 014382 178 IKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVAC-GWRHTISVSSSGRLYSYGW 256 (425)
Q Consensus 178 i~~i~~G~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~-g~~~~~~lt~~G~vy~~G~ 256 (425)
+.--.|...+.+-+..||+|-.-.. ..+...--.+.... ..++.|.. -..+.+++..+|+||+--.
T Consensus 8 ~~~~~~~~g~~L~I~~dG~V~Gt~~----------~~~~~s~l~~~~v~---~G~V~I~g~~sg~yL~m~~~G~v~Gs~~ 74 (132)
T 3q7x_A 8 VLLRSTETGQFLRINPDGTVDGTRD----------RSDPGIQFQISPEG---NGEVLLRSTETGQFLRINPDGTVDGTRD 74 (132)
T ss_dssp EEEEETTTCCEEEECTTSBEEEECC----------TTCGGGCEEEEEEE---TTEEEEEETTTCCEEEECTTSBEEEECC
T ss_pred heeeeccCcEEEEECCCCcEEeecC----------CCCCCcEEEEEecc---cCEEEEEEEcccEEEEECCCCCEeeccC
Confidence 4445677777788888999986532 11222222333333 23455443 3446778899999997532
Q ss_pred CCCCcCCCCCCCCcccceeecccc--CCcEEEEecCCceEEEEeCCCcEEE
Q 014382 257 SKYGQLGHGDFKDHLVPCQLEALR--ESFISQISGGWRHTMAVTSDGKLYG 305 (425)
Q Consensus 257 n~~gqlg~~~~~~~~~p~~v~~~~--~~~i~~i~~G~~~~~~lt~~g~v~~ 305 (425)
. .+.....++.... ...++.+.. ...++++.+|++|.
T Consensus 75 ~----------s~ec~flE~~~~~~g~v~ikg~~s--g~YLamnk~G~lyg 113 (132)
T 3q7x_A 75 R----------SDPGIQFQISPEGNGEVLLRSTET--GQFLRINPDGTVDG 113 (132)
T ss_dssp -----------CCGGGCEEEEEEETTEEEEEETTT--CCEEEECTTSBEEE
T ss_pred C----------CCCceeEEEEeecCcEEEEEeccC--CeEEEECCCCcCcC
Confidence 1 1111111111111 111333333 34888999999995
No 123
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=33.42 E-value=2.8e+02 Score=25.28 Aligned_cols=140 Identities=14% Similarity=0.125 Sum_probs=71.4
Q ss_pred CCeEEEEEcCCCEEEEEeCCCCCCCCCCCCCCcccceeecc-cCCCCEEEEEeCC--CEEEEEEcCCCEEEEeCCCCCcc
Q 014382 80 ADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKA-LHSLRVKQIACGD--SHCLAVTVEGEVQSWGRNQNGQL 156 (425)
Q Consensus 80 ~~~~~~lt~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~-~~~~~i~~v~~G~--~~~~~lt~~G~vy~~G~n~~gql 156 (425)
....+++--| +.||.|=... |+ . ...++. -....|..|+... .+.+.-+.||.|..|-......+
T Consensus 115 ~~n~lAvgld-~tV~lWd~~t-g~--------~--~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~ 182 (420)
T 4gga_A 115 SGNVLAVALD-NSVYLWSASS-GD--------I--LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL 182 (420)
T ss_dssp TTSEEEEEET-TEEEEEETTT-CC--------E--EEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred CCCEEEEEeC-CEEEEEECCC-CC--------E--EEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEE
Confidence 3456777778 9999995322 11 0 111111 1123577777654 45555678999999965432110
Q ss_pred CCCCCCCcccceeeeccCCceEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEE
Q 014382 157 GLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVA 236 (425)
Q Consensus 157 g~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~ 236 (425)
..+. .....+..++......+.-..++.++.|-..... ..+..+......+..+.
T Consensus 183 -----------~~~~-~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~-------------~~~~~~~~h~~~~~~~~ 237 (420)
T 4gga_A 183 -----------RNMT-SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAE-------------HHVATLSGHSQEVCGLR 237 (420)
T ss_dssp -----------EEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSS-------------CEEEEEECCSSCEEEEE
T ss_pred -----------EEEe-CCCCceEEEeeCCCEEEEEeCCCceeEeeecccc-------------eeeEEecccccceeeee
Confidence 1111 1123455566555555555677777777432210 11112221223343333
Q ss_pred e--cCceEEEEecCCCEEEecC
Q 014382 237 C--GWRHTISVSSSGRLYSYGW 256 (425)
Q Consensus 237 ~--g~~~~~~lt~~G~vy~~G~ 256 (425)
. ...+.+....||.+..|-.
T Consensus 238 ~~~~g~~l~s~~~D~~v~i~~~ 259 (420)
T 4gga_A 238 WAPDGRHLASGGNDNLVNVWPS 259 (420)
T ss_dssp ECTTSSEEEEEETTSCEEEEES
T ss_pred ecCCCCeeeeeeccccceEEee
Confidence 3 3345556667888888854
No 124
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=32.56 E-value=3e+02 Score=25.33 Aligned_cols=126 Identities=13% Similarity=0.083 Sum_probs=68.9
Q ss_pred EEcCCCeEEEEEcCCCEEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeC-----CCEEEEEEcCCCEEEEeC
Q 014382 76 VTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG-----DSHCLAVTVEGEVQSWGR 150 (425)
Q Consensus 76 i~~G~~~~~~lt~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G-----~~~~~~lt~~G~vy~~G~ 150 (425)
++.+..+.+++|+. |++|.+-..+.-..++... -......+....+.+|+.+..- ..+.+++|++|.+.-.--
T Consensus 53 ~~~t~d~ll~fT~~-G~~~~~~~~eip~~~r~a~-G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l 130 (370)
T 3l6v_A 53 LVNTHDTLLTFTSS-GKVFWLPVHQLPEAGSNAR-GRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPL 130 (370)
T ss_dssp EECTTCEEEEEETT-SEEEEEEGGGSCBCCTTSC-CEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEG
T ss_pred EecCCCEEEEEeCC-CeEEEEEHHHCcCCCcccC-CcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEH
Confidence 34455667888888 9999987655433332211 0000111222346688877653 347889999998887764
Q ss_pred CCCCccCCCCCCCcccceeeeccCCceEEE--EEeCCCeEEEEecCCcEEEeeCCCCCCCC
Q 014382 151 NQNGQLGLGTTEDSLVPQKLQAFEGVSIKM--VAAGAEHSVAVAEDGELYGWGWGRYGNLG 209 (425)
Q Consensus 151 n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~--i~~G~~~~~~L~~~g~vy~~G~n~~gqlg 209 (425)
..+.... .... ..+..-++..++. +..+....++++++|++.-+-...-..+|
T Consensus 131 ~e~~~~~---~~G~---~ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~g 185 (370)
T 3l6v_A 131 SEFAFRL---ARGK---IAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMG 185 (370)
T ss_dssp GGGCSCC---TTCE---ESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred HHhhccc---CCce---EEEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccC
Confidence 3332111 0000 0011111223333 34567789999999999988655443333
No 125
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=32.34 E-value=2.9e+02 Score=25.10 Aligned_cols=33 Identities=12% Similarity=0.019 Sum_probs=21.8
Q ss_pred CCCCCCeEEEeccCCceEE--EEcCCeEEEEeCCC
Q 014382 15 AAPFRPVLLISAGASHSVA--LLSGNIVCSWGRGE 47 (425)
Q Consensus 15 ~~~~~~i~~i~~g~~~~~~--l~~~g~v~~wG~n~ 47 (425)
+.....|..++.......+ -..||.|.+|-...
T Consensus 25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~ 59 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQ 59 (447)
T ss_dssp CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC
T ss_pred ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecC
Confidence 3345678888876554333 34799999998654
No 126
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=31.93 E-value=2.6e+02 Score=24.48 Aligned_cols=251 Identities=8% Similarity=-0.039 Sum_probs=116.0
Q ss_pred CCCeEEEeccCCce-EE-EEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcC--CCeEEEEEcCCCEE
Q 014382 18 FRPVLLISAGASHS-VA-LLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG--ADHTTAYSESCMQV 93 (425)
Q Consensus 18 ~~~i~~i~~g~~~~-~~-l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~~~~~lt~~~g~v 93 (425)
..+|..++...+.. ++ -..||.|++|-.... + ......+... ...|..++.. ....+....| |.|
T Consensus 8 ~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~-~--------~~~~~~~~~h-~~~v~~~~~~~~~~~l~~~~~d-g~i 76 (372)
T 1k8k_C 8 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGN-K--------WVQVHELKEH-NGQVTGVDWAPDSNRIVTCGTD-RNA 76 (372)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETT-E--------EEEEEEEECC-SSCEEEEEEETTTTEEEEEETT-SCE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCC-c--------EEeeeeecCC-CCcccEEEEeCCCCEEEEEcCC-CeE
Confidence 34566666543322 22 336888888864321 0 0011122221 2356666554 3344444566 888
Q ss_pred EEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeC--CCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeee
Q 014382 94 YSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQ 171 (425)
Q Consensus 94 ~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G--~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~ 171 (425)
..|-.... ...+..........|..++.. ....+..+.+|.|+.|-...... ......+.
T Consensus 77 ~vwd~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~--------~~~~~~~~ 138 (372)
T 1k8k_C 77 YVWTLKGR----------TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND--------WWVCKHIK 138 (372)
T ss_dssp EEEEEETT----------EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT--------EEEEEEEC
T ss_pred EEEECCCC----------eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCc--------ceeeeeee
Confidence 88843211 011111111123356666654 34566667789999986433210 00111111
Q ss_pred ccCCceEEEEEeCC--CeEEEEecCCcEEEeeCCCCCCCCCCCC-----CCCcceeeeeeeecCCCeEEEEEecC--ceE
Q 014382 172 AFEGVSIKMVAAGA--EHSVAVAEDGELYGWGWGRYGNLGLGDR-----NDRLIPEKVATVDLQREKMVMVACGW--RHT 242 (425)
Q Consensus 172 ~~~~~~i~~i~~G~--~~~~~L~~~g~vy~~G~n~~gqlg~~~~-----~~~~~p~~v~~~~~~~~~i~~i~~g~--~~~ 242 (425)
......|..++... ...+.-..+|.|+.|-..... +..... ........+..+......|..++... .+.
T Consensus 139 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 217 (372)
T 1k8k_C 139 KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKE-VEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRV 217 (372)
T ss_dssp TTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTT-TSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEE
T ss_pred cccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccc-ccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEE
Confidence 11133566666543 344555678999999743211 000000 00011122222222234566666533 355
Q ss_pred EEEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcEEEEecC-CceEEEEeCCCcEEEeeeCC
Q 014382 243 ISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGG-WRHTMAVTSDGKLYGWGWNK 310 (425)
Q Consensus 243 ~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G-~~~~~~lt~~g~v~~wG~n~ 310 (425)
+....||.|+.|-..... ....+. .....|..++.. ....++...+|.|+.|-...
T Consensus 218 ~~~~~d~~i~i~d~~~~~-----------~~~~~~-~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 218 AWVSHDSTVCLADADKKM-----------AVATLA-SETLPLLAVTFITESSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp EEEETTTEEEEEEGGGTT-----------EEEEEE-CSSCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred EEEeCCCEEEEEECCCCc-----------eeEEEc-cCCCCeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence 555678888887532111 011111 112235555433 23455556888888886544
No 127
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=31.45 E-value=3.9e+02 Score=27.12 Aligned_cols=124 Identities=10% Similarity=0.080 Sum_probs=67.6
Q ss_pred EeCCCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeeccCCceEEEEEeC--CCeEEEEecCCcEEEeeCCCCCC
Q 014382 130 ACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGN 207 (425)
Q Consensus 130 ~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G--~~~~~~L~~~g~vy~~G~n~~gq 207 (425)
+...++.+++|+.|++|..-....... . ..-......+...++++|+.+... ..+.++.|++|.+.-.-...+-.
T Consensus 511 ~~t~d~ll~ft~~Gr~y~~~~~~lP~~-~--~~G~~i~~ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~~~ 587 (716)
T 1zvu_A 511 GKSNQPVVFVDSTGRSYAIDPITLPSA-R--GQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVA 587 (716)
T ss_dssp CCSSSCEEEEETTSEEEEECTTTSCCC-C-----CBSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCC
T ss_pred ecCCCEEEEEecCCcEEEEEeeecccc-c--ccCeeHHhccCCCCCCeEEEEEEecCCceEEEEeCCceEEEecHHHhcc
Confidence 344577899999999998865443221 1 111112222333346778887665 34567788899888654333210
Q ss_pred CCCCCCCCCcceeeeeeeecCCCeEEEE---EecCceEEEEecCCCEEEecCCCCCcCCC
Q 014382 208 LGLGDRNDRLIPEKVATVDLQREKMVMV---ACGWRHTISVSSSGRLYSYGWSKYGQLGH 264 (425)
Q Consensus 208 lg~~~~~~~~~p~~v~~~~~~~~~i~~i---~~g~~~~~~lt~~G~vy~~G~n~~gqlg~ 264 (425)
..........+.. +..++.+ ..+..+.++++++|++..|-.++--.+|.
T Consensus 588 -------~~~~g~~ai~L~~-~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~~~~v~~~gr 639 (716)
T 1zvu_A 588 -------RNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 639 (716)
T ss_dssp -------CSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEEEEEESTTSCBCSS
T ss_pred -------cCccceEEEeeCC-CCEEEEEEEecCCCCEEEEEeCCCeEEEEEHHHCCccCc
Confidence 0011111111111 2233322 23677899999999999887765544443
No 128
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=30.03 E-value=2.8e+02 Score=24.26 Aligned_cols=248 Identities=7% Similarity=-0.064 Sum_probs=112.7
Q ss_pred cEEEEEcCCCe-EEEEE-cCCCEEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeC--CCEEEEEEcCCCEEE
Q 014382 72 EIVSVTCGADH-TTAYS-ESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVEGEVQS 147 (425)
Q Consensus 72 ~i~~i~~G~~~-~~~lt-~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G--~~~~~~lt~~G~vy~ 147 (425)
.|..++...+. .++.. .+ +.|+.|-.... .......+. .....|..++.. ....+....+|.|+.
T Consensus 10 ~i~~~~~s~~~~~l~~~~~d-~~v~i~~~~~~---------~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~~dg~i~v 78 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAICPNN-HEVHIYEKSGN---------KWVQVHELK-EHNGQVTGVDWAPDSNRIVTCGTDRNAYV 78 (372)
T ss_dssp CCCEEEECTTSSEEEEECSS-SEEEEEEEETT---------EEEEEEEEE-CCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred CeEEEEECCCCCEEEEEeCC-CEEEEEeCCCC---------cEEeeeeec-CCCCcccEEEEeCCCCEEEEEcCCCeEEE
Confidence 45555554332 23333 56 99999942211 000011111 123356666554 455666677899999
Q ss_pred EeCCCCCccCCCCCCCcccceeeeccCCceEEEEEeC--CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeee
Q 014382 148 WGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATV 225 (425)
Q Consensus 148 ~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G--~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~ 225 (425)
|-.... ...+..........|..++.. ....+.-..+|.|+.|-...... ......+ .
T Consensus 79 wd~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~--------~~~~~~~--~ 138 (372)
T 1k8k_C 79 WTLKGR----------TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND--------WWVCKHI--K 138 (372)
T ss_dssp EEEETT----------EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT--------EEEEEEE--C
T ss_pred EECCCC----------eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCc--------ceeeeee--e
Confidence 964221 011111111112346656543 33445556788888875322110 0001111 0
Q ss_pred ecCCCeEEEEEecC--ceEEEEecCCCEEEecCCCCCcCCCCCC----CCcccceeeccc--cCCcEEEEecC--CceEE
Q 014382 226 DLQREKMVMVACGW--RHTISVSSSGRLYSYGWSKYGQLGHGDF----KDHLVPCQLEAL--RESFISQISGG--WRHTM 295 (425)
Q Consensus 226 ~~~~~~i~~i~~g~--~~~~~lt~~G~vy~~G~n~~gqlg~~~~----~~~~~p~~v~~~--~~~~i~~i~~G--~~~~~ 295 (425)
......|..++... ...+.-..+|.|+.|-......-..... ........+..+ ....|..++.. ..+.+
T Consensus 139 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 218 (372)
T 1k8k_C 139 KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA 218 (372)
T ss_dssp TTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred cccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEE
Confidence 11134566665543 3455556789999886422110000000 000011111111 12336665543 33555
Q ss_pred EEeCCCcEEEeeeCCCCCcccCCCCCcccceEeecCCCCcEEEEEcC-CCeeEEEeCCCCEEEeeCCC
Q 014382 296 AVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCG-WRHTLAVTERQNVFSWGRGT 362 (425)
Q Consensus 296 ~lt~~g~v~~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G-~~~~~~l~~~g~vy~wG~n~ 362 (425)
.-..+|.|..|-..... +...-......|..++.. ....++...+|.++.|-...
T Consensus 219 ~~~~d~~i~i~d~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 219 WVSHDSTVCLADADKKM------------AVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp EEETTTEEEEEEGGGTT------------EEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred EEeCCCEEEEEECCCCc------------eeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence 56678888888654211 111111122355555543 23455556888888886543
No 129
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=29.99 E-value=2.7e+02 Score=24.02 Aligned_cols=156 Identities=11% Similarity=0.016 Sum_probs=82.4
Q ss_pred eEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEE--EcCCCeEEEEEcCCCEEEEEeCCCCCCCCCCC
Q 014382 31 SVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSV--TCGADHTTAYSESCMQVYSWGWGDFGRLGHGN 108 (425)
Q Consensus 31 ~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i--~~G~~~~~~lt~~~g~v~~wG~n~~g~lg~~~ 108 (425)
.++++++|.+-.---...+ +..+..-++..++.+ +...++.+++|+. |++|..-..+.-.. ..
T Consensus 5 ~v~lT~~G~iKr~~~~~~~------------~~~~~lke~D~l~~~~~~~t~~~ll~~T~~-Gr~~~~~~~elp~~-r~- 69 (256)
T 1zvt_A 5 TIVLSQMGWVRSAKGHDID------------APGLNYKAGDSFKAAVKGKSNQPVVFVDST-GRSYAIDPITLPSA-RG- 69 (256)
T ss_dssp EEEEETTSEEEEEESSCCC------------STTSCCCTTCCEEEEEEEETTSCEEEEETT-SEEEEECGGGSCCS-SS-
T ss_pred EEEEeCCCEEEEeeCCcCC------------ceeccCCCCCEEEEEEEeCCCCEEEEEeCC-CeEEEEEHHHCCCc-CC-
Confidence 4668888887544322111 111111222344443 3456678888988 99999976553111 11
Q ss_pred CCCcccceeecccCCCCEEEEEeC--CCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeecc-CCceEEEE--E-
Q 014382 109 SSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAF-EGVSIKMV--A- 182 (425)
Q Consensus 109 ~~~~~~p~~v~~~~~~~i~~v~~G--~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~-~~~~i~~i--~- 182 (425)
........+....+.+|+.+... ..+.+++|++|.+.-.-...+-....+ -..+..+ ++..++.+ .
T Consensus 70 -~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~-------G~~~i~L~~~d~lv~~~~~~ 141 (256)
T 1zvt_A 70 -QGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRA-------GKALITLPENAHVMPPVVIE 141 (256)
T ss_dssp -CCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTT-------CEECBCCCTTCCBCCCEECC
T ss_pred -CCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcC-------ceEEEEECCCCEEEEEEEec
Confidence 11101112233346688888763 456788899998887754332111000 0011111 12233322 2
Q ss_pred eCCCeEEEEecCCcEEEeeCCCCCCCC
Q 014382 183 AGAEHSVAVAEDGELYGWGWGRYGNLG 209 (425)
Q Consensus 183 ~G~~~~~~L~~~g~vy~~G~n~~gqlg 209 (425)
.+.++.++++++|++.-+-.++.-.+|
T Consensus 142 ~~~~~i~l~T~~G~~lrf~~~ei~~~g 168 (256)
T 1zvt_A 142 DASDMLLAITQAGRMLMFPVSDLPQLS 168 (256)
T ss_dssp CTTCEEEEEETTSEEEEEEGGGSCBCS
T ss_pred CCCCEEEEEcCCCeEEEEEHHHCCCcC
Confidence 367789999999999988766654444
No 130
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=29.29 E-value=3e+02 Score=24.41 Aligned_cols=230 Identities=8% Similarity=-0.042 Sum_probs=0.0
Q ss_pred ceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcCCCeEEEEEcCCCEEEEEeCCCCCCCCCCCC
Q 014382 30 HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNS 109 (425)
Q Consensus 30 ~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~~g~v~~wG~n~~g~lg~~~~ 109 (425)
..+++..+|+.........+.+-.=+.........+.......-..++--..+.++...+++.|+.| +.
T Consensus 35 ~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~-----------d~ 103 (391)
T 1l0q_A 35 MGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVI-----------DT 103 (391)
T ss_dssp EEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEE-----------ET
T ss_pred ceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEE-----------EC
Q ss_pred CCcccceeecccCCCCEEEEEeCCCEE-EEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeeccCCceEEEEEeCCCeE
Q 014382 110 SDLFTPLPIKALHSLRVKQIACGDSHC-LAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHS 188 (425)
Q Consensus 110 ~~~~~p~~v~~~~~~~i~~v~~G~~~~-~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~ 188 (425)
........+.......-..++....+. +.-..++.|+.| +.........+.......-..++-...+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~-----------d~~~~~~~~~~~~~~~~~~~~~~~dg~~l 172 (391)
T 1l0q_A 104 TSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVI-----------NTVTKAVINTVSVGRSPKGIAVTPDGTKV 172 (391)
T ss_dssp TTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEE-----------ETTTTEEEEEEECCSSEEEEEECTTSSEE
T ss_pred CCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEE-----------ECCCCcEEEEEecCCCcceEEECCCCCEE
Q ss_pred -EEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEecCc--eEEEEecCCCEEEecCC--CCCcCC
Q 014382 189 -VAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWR--HTISVSSSGRLYSYGWS--KYGQLG 263 (425)
Q Consensus 189 -~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~g~~--~~~~lt~~G~vy~~G~n--~~gqlg 263 (425)
+.-..++.|+.| +....+++....... ..+++..+|+....+.. ..+.+-
T Consensus 173 ~~~~~~~~~v~~~-------------------------d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~ 227 (391)
T 1l0q_A 173 YVANFDSMSISVI-------------------------DTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVS 227 (391)
T ss_dssp EEEETTTTEEEEE-------------------------ETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEE
T ss_pred EEEeCCCCEEEEE-------------------------ECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEE
Q ss_pred CCCCCCcccceeeccccCCcEEEEecCCceE-EEEeCCCcEEEe
Q 014382 264 HGDFKDHLVPCQLEALRESFISQISGGWRHT-MAVTSDGKLYGW 306 (425)
Q Consensus 264 ~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~-~~lt~~g~v~~w 306 (425)
.-+.........+..-....-..++.-..+. +....++.|+.|
T Consensus 228 ~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~ 271 (391)
T 1l0q_A 228 MIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVI 271 (391)
T ss_dssp EEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEE
No 131
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=28.76 E-value=3.2e+02 Score=24.50 Aligned_cols=196 Identities=11% Similarity=0.022 Sum_probs=84.0
Q ss_pred EEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeeccCCceEEEEEeC---CCeEEEEecCCcEEEeeCCCCCCCCCC
Q 014382 135 HCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG---AEHSVAVAEDGELYGWGWGRYGNLGLG 211 (425)
Q Consensus 135 ~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G---~~~~~~L~~~g~vy~~G~n~~gqlg~~ 211 (425)
..+.-..|+.|..|-......+.. .......-....|..++.. ....+.-..||.|..|-....++
T Consensus 172 ~l~s~s~D~~i~~wd~~~~~~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~---- 240 (380)
T 3iz6_a 172 RLITGSGDQTCVLWDVTTGQRISI-------FGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR---- 240 (380)
T ss_dssp CEEEECTTSCEEEECTTTCCEEEE-------ECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC----
T ss_pred EEEEECCCCcEEEEEcCCCcEEEE-------eecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc----
Confidence 344556788899995433211100 0000000112345555542 34445556789999996432111
Q ss_pred CCCCCcceeeeeeeecCCCeEEEEEecC--ceEEEEecCCCEEEecCCCCCcCCCCCCCCcccceeeccccCCcEEEEec
Q 014382 212 DRNDRLIPEKVATVDLQREKMVMVACGW--RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISG 289 (425)
Q Consensus 212 ~~~~~~~p~~v~~~~~~~~~i~~i~~g~--~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~ 289 (425)
.+..+.-....|..++... .+.+.-..||.|..|-.....++..-........ ..........++.
T Consensus 241 ---------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~ 308 (380)
T 3iz6_a 241 ---------AVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRND---NELPIVTSVAFSI 308 (380)
T ss_dssp ---------CCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSC---CSSCSCSEEEECS
T ss_pred ---------ceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccc---cccCceEEEEECC
Confidence 1111111123444554433 3444445788888886543222110000000000 0000111233334
Q ss_pred CCceEEEEeCCCcEEEeeeCCCCCcccCCCCCcccceEeecCCCCcEEEEEcCCCeeEE--EeCCCCEEEeeCC
Q 014382 290 GWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLA--VTERQNVFSWGRG 361 (425)
Q Consensus 290 G~~~~~~lt~~g~v~~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~~~~--l~~~g~vy~wG~n 361 (425)
.....++-..+|.|+.|-......+. ....+.......|..++...+..++ -..||.|..|-..
T Consensus 309 ~g~~l~~g~~dg~i~vwd~~~~~~~~--------~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 309 SGRLLFAGYSNGDCYVWDTLLAEMVL--------NLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp SSSEEEEECTTSCEEEEETTTCCEEE--------EECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred CCCEEEEEECCCCEEEEECCCCceEE--------EEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence 44555666788999999533211100 0000001122345555544333233 3468899999653
No 132
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=26.80 E-value=3.8e+02 Score=24.68 Aligned_cols=215 Identities=12% Similarity=0.098 Sum_probs=0.0
Q ss_pred ceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcCCC--eEEEEEcCCCEEEEEeCCCCC-CCCC
Q 014382 30 HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD--HTTAYSESCMQVYSWGWGDFG-RLGH 106 (425)
Q Consensus 30 ~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~--~~~~lt~~~g~v~~wG~n~~g-~lg~ 106 (425)
+.++++.+|+||+-... ..-..+-.++...+..+..+.. + +++..+ |+...|.....+ .+-.
T Consensus 134 ~~la~d~~g~lyv~d~~-------------~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~-g~~l~~~d~~~~~~I~~ 198 (409)
T 3hrp_A 134 WGIAAVGNNTVLAYQRD-------------DPRVRLISVDDNKVTTVHPGFKGGK-PAVTKD-KQRVYSIGWEGTHTVYV 198 (409)
T ss_dssp EEEEECSTTEEEEEETT-------------TTEEEEEETTTTEEEEEEETCCBCB-CEECTT-SSEEEEEBSSTTCEEEE
T ss_pred eEEEEeCCCCEEEEecC-------------CCcEEEEECCCCEEEEeeccCCCCc-eeEecC-CCcEEEEecCCCceEEE
Q ss_pred CCCCCcccceee----c-ccCCCCEEEEEeCCCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeeccCCceEEEE
Q 014382 107 GNSSDLFTPLPI----K-ALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMV 181 (425)
Q Consensus 107 ~~~~~~~~p~~v----~-~~~~~~i~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i 181 (425)
-+......+..+ . ......-..+.....+.++.+.+++||.| .+....+..+
T Consensus 199 ~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~-----------------------d~~~~~~~~~ 255 (409)
T 3hrp_A 199 YMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRF-----------------------NVKTQEVTLI 255 (409)
T ss_dssp EEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEE-----------------------ETTTCCEEEE
T ss_pred EEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEE-----------------------ECCCCCEEEE
Q ss_pred -------EeCCC-e-EEEEec-CCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEecC------------
Q 014382 182 -------AAGAE-H-SVAVAE-DGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW------------ 239 (425)
Q Consensus 182 -------~~G~~-~-~~~L~~-~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~g~------------ 239 (425)
..+.. + .++++. +|.||+.-... ..|..+..... +..++...
T Consensus 256 ~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~---------------~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~ 319 (409)
T 3hrp_A 256 KQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL---------------SSVYKITPDGE-CEWFCGSATQKTVQDGLREE 319 (409)
T ss_dssp EECCCCSCCCCSSCCEEEEETTTTEEEEEETTT---------------TEEEEECTTCC-EEEEEECTTCCSCBCEEGGG
T ss_pred ecccccCCCCCCccccEEEeCCCCEEEEEeCCC---------------CEEEEEecCCC-EEEEEeCCCCCCcCCCcccc
Q ss_pred -----ceEEEEecCCCEEEecC-CCCCcCCCCCCCCcccceeeccccCCcEEEEecC-----------------CceEEE
Q 014382 240 -----RHTISVSSSGRLYSYGW-SKYGQLGHGDFKDHLVPCQLEALRESFISQISGG-----------------WRHTMA 296 (425)
Q Consensus 240 -----~~~~~lt~~G~vy~~G~-n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G-----------------~~~~~~ 296 (425)
-..++++.+|+||..-. .+. -...-.+.+..+..++.. .=+.++
T Consensus 320 ~~~~~P~gia~d~dG~lyvad~~~~~-------------~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~gia 386 (409)
T 3hrp_A 320 ALFAQPNGMTVDEDGNFYIVDGFKGY-------------CLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDIC 386 (409)
T ss_dssp CBCSSEEEEEECTTCCEEEEETTTTC-------------EEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEE
T ss_pred cEeCCCeEEEEeCCCCEEEEeCCCCC-------------EEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEE
Q ss_pred EeCCCcEEEeeeCCC
Q 014382 297 VTSDGKLYGWGWNKF 311 (425)
Q Consensus 297 lt~~g~v~~wG~n~~ 311 (425)
++.+|.||+-..+.+
T Consensus 387 vd~~g~lyVad~~n~ 401 (409)
T 3hrp_A 387 YDGEGGYWIAEAWGK 401 (409)
T ss_dssp ECSSSEEEEEESTTC
T ss_pred EcCCCCEEEEECCCC
No 133
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=23.56 E-value=3.4e+02 Score=23.07 Aligned_cols=123 Identities=9% Similarity=-0.040 Sum_probs=64.9
Q ss_pred CCCeEEEeccCCc--eEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcCC----CeEEEEEcCCC
Q 014382 18 FRPVLLISAGASH--SVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGA----DHTTAYSESCM 91 (425)
Q Consensus 18 ~~~i~~i~~g~~~--~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~----~~~~~lt~~~g 91 (425)
...|..++..... .+.-..||.|.+|-...... .......+... ...|..++... ...+....| |
T Consensus 11 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-------~~~~~~~~~~~-~~~v~~~~~~~~~d~~~l~s~~~d-g 81 (351)
T 3f3f_A 11 DDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS-------NWELSDSWRAH-DSSIVAIDWASPEYGRIIASASYD-K 81 (351)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSC-------CEEEEEEEECC-SSCEEEEEECCGGGCSEEEEEETT-S
T ss_pred ccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC-------cceecceeccC-CCcEEEEEEcCCCCCCEEEEEcCC-C
Confidence 4567777765443 34445789999996542110 00111111222 23688787653 344455566 9
Q ss_pred EEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeCC----CEEEEEEcCCCEEEEeCCC
Q 014382 92 QVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD----SHCLAVTVEGEVQSWGRNQ 152 (425)
Q Consensus 92 ~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~----~~~~~lt~~G~vy~~G~n~ 152 (425)
.|..|-......... .....+..........|..++... .+.+..+.+|.|+.|-...
T Consensus 82 ~v~vwd~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 143 (351)
T 3f3f_A 82 TVKLWEEDPDQEECS---GRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALE 143 (351)
T ss_dssp CEEEEEECTTSCTTS---SCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSS
T ss_pred eEEEEecCCCccccc---ccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCC
Confidence 999996443211000 011111111112234688887764 4566778899999997543
No 134
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=23.07 E-value=3.7e+02 Score=23.25 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=11.8
Q ss_pred eEEEEeCCCc-EEEeeeC
Q 014382 293 HTMAVTSDGK-LYGWGWN 309 (425)
Q Consensus 293 ~~~~lt~~g~-v~~wG~n 309 (425)
+.++++.+|+ +|+-...
T Consensus 317 ~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 317 NSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EEEEECTTSCEEEEEEEC
T ss_pred CeEEEcCCCCEEEEEEcc
Confidence 5577888887 7775544
No 135
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=22.39 E-value=4.1e+02 Score=23.52 Aligned_cols=185 Identities=14% Similarity=0.097 Sum_probs=88.9
Q ss_pred CEEEEEeC--CCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeeccCCceEEEEEeCC----CeEEEEecCCcEE
Q 014382 125 RVKQIACG--DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA----EHSVAVAEDGELY 198 (425)
Q Consensus 125 ~i~~v~~G--~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G~----~~~~~L~~~g~vy 198 (425)
.|..++.. ....+.-+.||.|..|-...... ...+.. ....|..++... ...+.-..||.|+
T Consensus 156 ~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~-----------~~~~~~-h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~ 223 (354)
T 2pbi_B 156 YLSACSFTNSDMQILTASGDGTCALWDVESGQL-----------LQSFHG-HGADVLCLDLAPSETGNTFVSGGCDKKAM 223 (354)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTCCE-----------EEEEEC-CSSCEEEEEECCCSSCCEEEEEETTSCEE
T ss_pred cEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeE-----------EEEEcC-CCCCeEEEEEEeCCCCCEEEEEeCCCeEE
Confidence 45555544 34566667789999996433110 011111 122344444322 3445556789999
Q ss_pred EeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEec--CceEEEEecCCCEEEecCCCCCcCCCCCCCCcccceee
Q 014382 199 GWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACG--WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQL 276 (425)
Q Consensus 199 ~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~g--~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v 276 (425)
.|-... + ..+..+......|..++.. ....+.-..||.|..|-.....++ ...
T Consensus 224 ~wd~~~-~-------------~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~-----------~~~ 278 (354)
T 2pbi_B 224 VWDMRS-G-------------QCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV-----------AIY 278 (354)
T ss_dssp EEETTT-C-------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-----------EEE
T ss_pred EEECCC-C-------------cEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE-----------EEE
Confidence 996322 1 1122222223456666653 234445567888888854321110 000
Q ss_pred ccc-cCCcEEEEe--cCCceEEEEeCCCcEEEeeeCCCCCcccCCCCCcccceEeecCCCCcEEEEEcCCC--eeEEEeC
Q 014382 277 EAL-RESFISQIS--GGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWR--HTLAVTE 351 (425)
Q Consensus 277 ~~~-~~~~i~~i~--~G~~~~~~lt~~g~v~~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~--~~~~l~~ 351 (425)
... ....+..++ ......++-..+|.|..|-..... +...-......|..++...+ +.+.-..
T Consensus 279 ~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~------------~~~~l~~h~~~v~~l~~spdg~~l~sgs~ 346 (354)
T 2pbi_B 279 SKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS------------RVSILFGHENRVSTLRVSPDGTAFCSGSW 346 (354)
T ss_dssp CCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS------------EEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred cCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc------------eEEEEECCCCcEEEEEECCCCCEEEEEcC
Confidence 000 011233433 333444455678899998543211 11111122345666655433 3333347
Q ss_pred CCCEEEe
Q 014382 352 RQNVFSW 358 (425)
Q Consensus 352 ~g~vy~w 358 (425)
||.|..|
T Consensus 347 D~~v~vW 353 (354)
T 2pbi_B 347 DHTLRVW 353 (354)
T ss_dssp TSEEEEE
T ss_pred CCCEEec
Confidence 7888877
No 136
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=22.29 E-value=4.4e+02 Score=23.89 Aligned_cols=146 Identities=15% Similarity=0.168 Sum_probs=73.2
Q ss_pred cEEEEEcCCCeEEEEE--cCCCEEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeC--CCEEEEEEcCCCEEE
Q 014382 72 EIVSVTCGADHTTAYS--ESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVEGEVQS 147 (425)
Q Consensus 72 ~i~~i~~G~~~~~~lt--~~~g~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G--~~~~~~lt~~G~vy~ 147 (425)
.|..++......++++ .| |.|..|-.... ++ ...+.. ....|..++.. ....+.-..||.|..
T Consensus 110 ~V~~~~~~p~~~~l~s~s~D-g~i~vwd~~~~-~~----------~~~l~~-h~~~V~~v~~~~~~~~l~sgs~D~~i~i 176 (410)
T 1vyh_C 110 PVTRVIFHPVFSVMVSASED-ATIKVWDYETG-DF----------ERTLKG-HTDSVQDISFDHSGKLLASCSADMTIKL 176 (410)
T ss_dssp CEEEEEECSSSSEEEEEESS-SCEEEEETTTC-CC----------CEEECC-CSSCEEEEEECTTSSEEEEEETTSCCCE
T ss_pred cEEEEEEcCCCCEEEEEeCC-CeEEEEECCCC-cE----------EEEEec-cCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 5777776655444433 56 99999953321 10 011111 12356666654 345555667899999
Q ss_pred EeCCCCCccCCCCCCCcccceeeeccCCceEEEEEeC--CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeee
Q 014382 148 WGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATV 225 (425)
Q Consensus 148 ~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G--~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~ 225 (425)
|-......+ ..+.. ....|..++.. ..+.+.-..|+.|..|-.... ..+..+
T Consensus 177 wd~~~~~~~-----------~~~~~-h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~--------------~~~~~~ 230 (410)
T 1vyh_C 177 WDFQGFECI-----------RTMHG-HDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG--------------YCVKTF 230 (410)
T ss_dssp EETTSSCEE-----------ECCCC-CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC--------------CEEEEE
T ss_pred EeCCCCcee-----------EEEcC-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC--------------cEEEEE
Confidence 965332111 00100 12245555543 345555677899999964221 111122
Q ss_pred ecCCCeEEEEEecC--ceEEEEecCCCEEEecC
Q 014382 226 DLQREKMVMVACGW--RHTISVSSSGRLYSYGW 256 (425)
Q Consensus 226 ~~~~~~i~~i~~g~--~~~~~lt~~G~vy~~G~ 256 (425)
......|..+.... ...+.-..||.|..|=.
T Consensus 231 ~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~ 263 (410)
T 1vyh_C 231 TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 263 (410)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eCCCccEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 21223455554433 33444457788888853
No 137
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=22.04 E-value=4.4e+02 Score=23.74 Aligned_cols=26 Identities=8% Similarity=0.114 Sum_probs=14.3
Q ss_pred CEEEEEeC--CCEEEEEE-cCCCEEEEeC
Q 014382 125 RVKQIACG--DSHCLAVT-VEGEVQSWGR 150 (425)
Q Consensus 125 ~i~~v~~G--~~~~~~lt-~~G~vy~~G~ 150 (425)
.+..++.. ..+.++.. .+|.|+.|-.
T Consensus 213 ~~~~~~~~~~~~~l~~~~~~~~~i~~~d~ 241 (433)
T 3bws_A 213 WSKILLYDPIRDLVYCSNWISEDISVIDR 241 (433)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CeeEEEEcCCCCEEEEEecCCCcEEEEEC
Confidence 45555443 33443444 4688888854
No 138
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=21.89 E-value=4e+02 Score=23.28 Aligned_cols=270 Identities=9% Similarity=0.000 Sum_probs=123.4
Q ss_pred CCeEEEeccCCceEE--EEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcC--CCeEEEEEcCCCEEE
Q 014382 19 RPVLLISAGASHSVA--LLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG--ADHTTAYSESCMQVY 94 (425)
Q Consensus 19 ~~i~~i~~g~~~~~~--l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~~~~~lt~~~g~v~ 94 (425)
.+|..++.......+ -..||.|.+|-..... ....+... ...|..++.. ....+.-..| +.+.
T Consensus 56 ~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~-----------~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~d-~~v~ 122 (340)
T 1got_B 56 AKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN-----------KVHAIPLR-SSWVMTCAYAPSGNYVACGGLD-NICS 122 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETTTCC-----------EEEEEECS-SSCEEEEEECTTSSEEEEEETT-CEEE
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEECCCCC-----------cceEeecC-CccEEEEEECCCCCEEEEEeCC-CeEE
Confidence 466777665443333 3478899999643211 11111111 1235555443 2333344456 8888
Q ss_pred EEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEe-CCCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeeecc
Q 014382 95 SWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIAC-GDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAF 173 (425)
Q Consensus 95 ~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~-G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~ 173 (425)
.|--.... ........+.. ....|..+.. .....+.-..||.|..|-...... ...+..
T Consensus 123 iw~~~~~~-------~~~~~~~~~~~-h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~-----------~~~~~~- 182 (340)
T 1got_B 123 IYNLKTRE-------GNVRVSRELAG-HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQ-----------TTTFTG- 182 (340)
T ss_dssp EEETTTCS-------BSCEEEEEEEC-CSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEE-----------EEEECC-
T ss_pred EEECccCC-------CcceeEEEecC-CCccEEEEEECCCCcEEEEECCCcEEEEECCCCcE-----------EEEEcC-
Confidence 88533210 00000111111 1123443332 234455667789999996432110 011111
Q ss_pred CCceEEEEEeCCC--eEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEecC--ceEEEEecCC
Q 014382 174 EGVSIKMVAAGAE--HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW--RHTISVSSSG 249 (425)
Q Consensus 174 ~~~~i~~i~~G~~--~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~g~--~~~~~lt~~G 249 (425)
....|..++...+ ..+.-..||.|..|-.... ..+..+......|..++... ...+.-..||
T Consensus 183 h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~--------------~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~ 248 (340)
T 1got_B 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG--------------MCRQTFTGHESDINAICFFPNGNAFATGSDDA 248 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--------------SEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC--------------eeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCC
Confidence 1224666655443 3344456888888853220 11112222234566665543 3444556788
Q ss_pred CEEEecCCCCCcCCCCCCCCcccceeeccc-cCCcEEEEecC--CceEEEEeCCCcEEEeeeCCCCCcccCCCCCcccce
Q 014382 250 RLYSYGWSKYGQLGHGDFKDHLVPCQLEAL-RESFISQISGG--WRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPV 326 (425)
Q Consensus 250 ~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~-~~~~i~~i~~G--~~~~~~lt~~g~v~~wG~n~~gqLG~~~~~~~~~p~ 326 (425)
.|..|-......+ ...... ....|..++.. ....++-..+|.|..|-..... +.
T Consensus 249 ~v~iwd~~~~~~~-----------~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~------------~~ 305 (340)
T 1got_B 249 TCRLFDLRADQEL-----------MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD------------RA 305 (340)
T ss_dssp CEEEEETTTTEEE-----------EEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC------------EE
T ss_pred cEEEEECCCCcEE-----------EEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCc------------Ee
Confidence 8888854321110 001100 01125555433 3344445678888888543211 11
Q ss_pred EeecCCCCcEEEEEcCCC--eeEEEeCCCCEEEe
Q 014382 327 QVKFPLDQKVVQISCGWR--HTLAVTERQNVFSW 358 (425)
Q Consensus 327 ~i~~~~~~~i~~i~~G~~--~~~~l~~~g~vy~w 358 (425)
..-......|..++...+ ..+.-..||.|..|
T Consensus 306 ~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iW 339 (340)
T 1got_B 306 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339 (340)
T ss_dssp EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred eEeecCCCcEEEEEEcCCCCEEEEEcCCccEEec
Confidence 111112345666655433 23333477888877
No 139
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=21.87 E-value=3.9e+02 Score=23.08 Aligned_cols=15 Identities=27% Similarity=0.496 Sum_probs=8.9
Q ss_pred eEEEEecCCCEEEec
Q 014382 241 HTISVSSSGRLYSYG 255 (425)
Q Consensus 241 ~~~~lt~~G~vy~~G 255 (425)
+.++++.+|++|...
T Consensus 90 ~~i~~~~dg~l~v~~ 104 (333)
T 2dg1_A 90 AAIKIHKDGRLFVCY 104 (333)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred ceEEECCCCcEEEEe
Confidence 445556666666654
No 140
>1bfg_A Basic fibroblast growth factor; 1.60A {Homo sapiens} SCOP: b.42.1.1 PDB: 1iil_A 1ii4_A 1bas_A 1bla_A 1bld_A 1bfb_A* 1bfc_A* 4fgf_A 1fga_A 2fgf_A 1ev2_A 1cvs_A 1fq9_A* 1bff_A 2bfh_A
Probab=21.31 E-value=3e+02 Score=21.54 Aligned_cols=70 Identities=11% Similarity=0.010 Sum_probs=37.0
Q ss_pred CCCCCeEEEeccC-CceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcCCCeEEEEEcCCCEEE
Q 014382 16 APFRPVLLISAGA-SHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVY 94 (425)
Q Consensus 16 ~~~~~i~~i~~g~-~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~~g~v~ 94 (425)
....+..++.|-. .+.+-|..||+|-.-.+.. +...-..+.... ..++.|..-...-++-.+++|+||
T Consensus 15 ~~~~r~~rLY~r~~g~~LqI~~dG~V~Gt~~~~----------~~~s~l~i~sv~-~G~V~I~gv~s~~YLcMn~~G~Ly 83 (146)
T 1bfg_A 15 GHFKDPKRLYCKNGGFFLRIHPDGRVDGVREKS----------DPHIKLQLQAEE-RGVVSIKGVSANRYLAMKEDGRLL 83 (146)
T ss_dssp ----CCEEEEETTTTEEEEECTTSCEEEECCTT----------CGGGCEEEEECS-TTEEEEEETTTTEEEEECTTSCEE
T ss_pred CCcCccEEEEEcCCCEEEEECCCCeEEeecCCC----------CCceEEEEEecc-CCEEEEEEcccCcEEEEcCCCCEe
Confidence 4667788888875 6778888999987443221 111222222222 235556554444444444349999
Q ss_pred EE
Q 014382 95 SW 96 (425)
Q Consensus 95 ~w 96 (425)
.-
T Consensus 84 gs 85 (146)
T 1bfg_A 84 AS 85 (146)
T ss_dssp EE
T ss_pred cc
Confidence 64
No 141
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=21.00 E-value=5e+02 Score=23.98 Aligned_cols=167 Identities=11% Similarity=0.051 Sum_probs=74.0
Q ss_pred EEEEEeCCCEEEEEEcCCC-EEEEeCC-CCCccCCCCCCCcccceeeeccCCceEEEEEeC---------CCeEEEEecC
Q 014382 126 VKQIACGDSHCLAVTVEGE-VQSWGRN-QNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG---------AEHSVAVAED 194 (425)
Q Consensus 126 i~~v~~G~~~~~~lt~~G~-vy~~G~n-~~gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G---------~~~~~~L~~~ 194 (425)
+..|..|...-++++.||+ +|+.... ..+.-| . ....-..+..-....+..|..+ .-+.++++.|
T Consensus 72 ~~~I~vG~~P~va~spDG~~lyVan~~~~r~~~G--~--~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spD 147 (386)
T 3sjl_D 72 IGMIDGGFLPNPVVADDGSFIAHASTVFSRIARG--E--RTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPD 147 (386)
T ss_dssp EEEEEECSSCEEEECTTSSCEEEEEEEEEETTEE--E--EEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTT
T ss_pred EEEEECCCCCcEEECCCCCEEEEEcccccccccC--C--CCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCC
Confidence 4555666544489998887 7765310 000000 0 0001111222223345556554 3567899988
Q ss_pred Cc-EEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEecCceEEEEecCCCEEEecCCCCCcCCCCCCCCcccc
Q 014382 195 GE-LYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVP 273 (425)
Q Consensus 195 g~-vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p 273 (425)
|+ +|+......+.+..=+..... .+..+..... ..-...|..-.++++.||++........+.+-. .. .
T Consensus 148 Gk~lyVan~~~~~~VsVID~~t~~---vv~tI~v~g~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~-----~~-~ 217 (386)
T 3sjl_D 148 GKTLLFYQFSPAPAVGVVDLEGKA---FKRMLDVPDC-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI-----TH-T 217 (386)
T ss_dssp SSEEEEEECSSSCEEEEEETTTTE---EEEEEECCSE-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEE-----EE-C
T ss_pred CCEEEEEEcCCCCeEEEEECCCCc---EEEEEECCCc-ceeecCCCceeEEECCCCCEEEEECCCCCeEEE-----ee-c
Confidence 86 777642211111111111111 1111111111 111233555556888999988877654444311 00 0
Q ss_pred eeeccccCCcEE---EEecCCceEEEEeCCCcEEEee
Q 014382 274 CQLEALRESFIS---QISGGWRHTMAVTSDGKLYGWG 307 (425)
Q Consensus 274 ~~v~~~~~~~i~---~i~~G~~~~~~lt~~g~v~~wG 307 (425)
.+.......+. .......+.++++.+|+||+.-
T Consensus 218 -~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d 253 (386)
T 3sjl_D 218 -EVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQID 253 (386)
T ss_dssp -CCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEE
T ss_pred -ceeccccccccccceeEcCCCcEEEEeCCCEEEEEE
Confidence 01001111110 1122334666788888888874
No 142
>3snv_A Symfoil-4T/permutation #1 synthetic protein; beta-trefoil, de novo protein; 2.20A {Homo sapiens}
Probab=20.45 E-value=3.1e+02 Score=21.33 Aligned_cols=98 Identities=13% Similarity=0.189 Sum_probs=50.3
Q ss_pred CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEe-cCceEEEEecCCCEEEecCCCCCcCC
Q 014382 185 AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVAC-GWRHTISVSSSGRLYSYGWSKYGQLG 263 (425)
Q Consensus 185 ~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~-g~~~~~~lt~~G~vy~~G~n~~gqlg 263 (425)
..+.+-+..||+|-.-.. ..+...--.+.... ..++.|.+ ...+-+++..+|+||+--..
T Consensus 18 ~g~~LqI~~dG~V~Gt~~----------~~~~~s~l~~~sv~---~G~V~I~gv~sg~yL~m~~~G~v~Gs~~~------ 78 (143)
T 3snv_A 18 GGQYLRINPDGTVDGTRD----------RSDTHIQFQISPEG---NGEVLLKSTETGQYLRINPDGTVDGTRDR------ 78 (143)
T ss_dssp -CCEEEECTTSBEEEESC----------TTCTTSEEEEEEEE---TTEEEEEETTTTEEEEECTTSBEEEECCT------
T ss_pred CCEEEEECCCCCEeeecC----------CCCCceEEEEEecc---CCeEEEEEEcccEEEeECCCCCEeecccC------
Confidence 344566777888874431 11122222333333 24555554 55678899999999975321
Q ss_pred CCCCCCcccceeeccccC--CcEEEEecCCceEEEEeCCCcEEEeeeC
Q 014382 264 HGDFKDHLVPCQLEALRE--SFISQISGGWRHTMAVTSDGKLYGWGWN 309 (425)
Q Consensus 264 ~~~~~~~~~p~~v~~~~~--~~i~~i~~G~~~~~~lt~~g~v~~wG~n 309 (425)
.+.....++..... ..++.+.. ...++++.+|++| |..
T Consensus 79 ----~~ec~flE~~~e~~g~v~i~~~~s--g~Ylamnk~Grl~--Gs~ 118 (143)
T 3snv_A 79 ----SDTHIQFQISPEGNGEVLLKSTET--GQYLRINPDGTVD--GTR 118 (143)
T ss_dssp ----TCTTSEEEEEECSTTEEEEEETTT--CCEEEECTTSBEE--EES
T ss_pred ----CCcceEEEEEecCCcEEEEEEeeC--CEEEEEcCCCcCc--CcC
Confidence 11112222222111 12333333 4678899999995 544
No 143
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=20.29 E-value=4.5e+02 Score=23.22 Aligned_cols=159 Identities=9% Similarity=-0.002 Sum_probs=76.3
Q ss_pred CCEEEEEeCCCEEEEEEcCCCEEEEeCCCC-CccCCCCCCCcccceeeeccCCceEEEEEeCCCeEEEE--ecCCcEEEe
Q 014382 124 LRVKQIACGDSHCLAVTVEGEVQSWGRNQN-GQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAV--AEDGELYGW 200 (425)
Q Consensus 124 ~~i~~v~~G~~~~~~lt~~G~vy~~G~n~~-gqlg~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~L--~~~g~vy~~ 200 (425)
..|..+.......++. .++.|+.|-.... ..+.. +.. ...+..++. ...++. ..+|.|..|
T Consensus 101 ~~v~~v~~~~~~~~~~-~~~~i~i~d~~~~~~~~~~-----------~~~--~~~~~~~s~--~~la~~sg~~~g~v~iw 164 (355)
T 3vu4_A 101 APVKDLFLSREFIVVS-YGDVISVFKFGNPWKRITD-----------DIR--FGGVCEFSN--GLLVYSNEFNLGQIHIT 164 (355)
T ss_dssp SCEEEEEECSSEEEEE-ETTEEEEEESSTTCCBSSC-----------CEE--EEEEEEEET--TEEEEEESSCTTCEEEE
T ss_pred CceEEEEEcCCEEEEE-EcCEEEEEECCCCceeeEE-----------ecc--CCceEEEEc--cEEEEeCCCcCcEEEEE
Confidence 3788888877765544 5889999975442 11100 000 112333333 333332 578999999
Q ss_pred eCCCCCCCCCCCCC---CCcceeeeeeeecCCCeEEEEEecCce--EEEEecCCC-EEEecCCCCCcCCCCCCCCcccce
Q 014382 201 GWGRYGNLGLGDRN---DRLIPEKVATVDLQREKMVMVACGWRH--TISVSSSGR-LYSYGWSKYGQLGHGDFKDHLVPC 274 (425)
Q Consensus 201 G~n~~gqlg~~~~~---~~~~p~~v~~~~~~~~~i~~i~~g~~~--~~~lt~~G~-vy~~G~n~~gqlg~~~~~~~~~p~ 274 (425)
-.....+....... ....| .+..+......|..++-..+- .+.-..||. |..|-..... ...
T Consensus 165 d~~~~~~~~~~~~~~~~~~~~p-~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~-----------~~~ 232 (355)
T 3vu4_A 165 KLQSSGSATTQDQGVQQKAILG-KGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV-----------LVR 232 (355)
T ss_dssp ECCC-------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC-----------EEE
T ss_pred ECCCCCccccccccccccccCc-ccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc-----------EEE
Confidence 75442211110000 00111 022223234567777665443 344457887 8888643211 111
Q ss_pred eec-cccCCcEEEEecCC--ceEEEEeCCCcEEEeeeCC
Q 014382 275 QLE-ALRESFISQISGGW--RHTMAVTSDGKLYGWGWNK 310 (425)
Q Consensus 275 ~v~-~~~~~~i~~i~~G~--~~~~~lt~~g~v~~wG~n~ 310 (425)
.+. ......|..++... .+.+.-..++.|..|-...
T Consensus 233 ~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~ 271 (355)
T 3vu4_A 233 EFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFN 271 (355)
T ss_dssp EEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSC
T ss_pred EEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccC
Confidence 222 11223466666543 3444556889999996543
Done!