BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014383
(425 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S31|A Chain A, Crystal Structure Analysis Of The Human Tub Protein
(isoform A) Spanning Residues 289 Through 561
Length = 273
Score = 174 bits (440), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 111/314 (35%), Positives = 157/314 (50%), Gaps = 68/314 (21%)
Query: 116 QPGARDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGK--FLLSAKRTRRTTCTEYVISM 173
+P + TI+C I RDK + +F L E+GK FLL+ ++ +++ + Y+IS+
Sbjct: 24 RPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLISV 83
Query: 174 DADNISRSSSTYIGKLRSNFLGTKFIIYDT--QPPHTSANITPSGCTSRRFYXXXXXXXX 231
D ++SR +YIGKLRSN +GTKF +YD P S++ SG +
Sbjct: 84 DPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGTLRQE---------- 133
Query: 232 XXGSYNIAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRS 291
+A + YE NVLG +GPR+M I VPG + R
Sbjct: 134 ------LAAVCYETNVLGFKGPRKMSVI--------------VPGMNMVHER-------- 165
Query: 292 ISFSKSLDHSVDFSSARFSEIGALREDDEDGKLRPLILKNKPPRWHEQLQCWCLNFRGRV 351
+S +H + + ++ E L+NK P W++ Q + LNF GRV
Sbjct: 166 VSIRPRNEHETLLARWQNKNTESIIE-----------LQNKTPVWNDDTQSYVLNFHGRV 214
Query: 352 TVASVKNFQLIXXXXXXXXXXXXXXXXXXEHDKIILQFGKVGKDMFTMDYRYPLSAFQAF 411
T ASVKNFQ+I + D I++QFG+V +D+FTMDY YPL A QAF
Sbjct: 215 TQASVKNFQIIHGN---------------DPDYIVMQFGRVAEDVFTMDYNYPLCALQAF 259
Query: 412 AICLSSFDTKLACE 425
AI LSSFD+KLACE
Sbjct: 260 AIALSSFDSKLACE 273
>pdb|1C8Z|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein
Length = 265
Score = 172 bits (436), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 109/314 (34%), Positives = 162/314 (51%), Gaps = 68/314 (21%)
Query: 116 QPGARDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGK--FLLSAKRTRRTTCTEYVISM 173
+P + TI+C I RDK + +F L E+GK FLL+ ++ +++ + Y+IS+
Sbjct: 16 RPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLISV 75
Query: 174 DADNISRSSSTYIGKLRSNFLGTKFIIYDT--QPPHTSANITPSGCTSRRFYXXXXXXXX 231
D ++SR +YIGKLRSN +GTKF +YD P S++ SG +
Sbjct: 76 DPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGTLRQE---------- 125
Query: 232 XXGSYNIAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRS 291
+A + YE NVLG +GPR+M I +P ++ V + + PR+ ++ +
Sbjct: 126 ------LAAVCYETNVLGFKGPRKMSVI---VPGMNM-----VHERVCIRPRNEHETLLA 171
Query: 292 ISFSKSLDHSVDFSSARFSEIGALREDDEDGKLRPLILKNKPPRWHEQLQCWCLNFRGRV 351
+K+ + ++ L+NK P W++ Q + LNF GRV
Sbjct: 172 RWQNKNTESIIE-------------------------LQNKTPVWNDDTQSYVLNFHGRV 206
Query: 352 TVASVKNFQLIXXXXXXXXXXXXXXXXXXEHDKIILQFGKVGKDMFTMDYRYPLSAFQAF 411
T ASVKNFQ+I + D I++QFG+V +D+FTMDY YPL A QAF
Sbjct: 207 TQASVKNFQIIHGN---------------DPDYIVMQFGRVAEDVFTMDYNYPLCALQAF 251
Query: 412 AICLSSFDTKLACE 425
AI LSSFD+KLACE
Sbjct: 252 AIALSSFDSKLACE 265
>pdb|2FIM|A Chain A, Structure Of The C-Terminal Domain Of Human Tubby-Like
Protein 1
pdb|2FIM|B Chain B, Structure Of The C-Terminal Domain Of Human Tubby-Like
Protein 1
Length = 276
Score = 172 bits (435), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 106/310 (34%), Positives = 151/310 (48%), Gaps = 64/310 (20%)
Query: 116 QPGARDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDA 175
+P + T++C + RDK + ++ L E FLL+ ++ +R+ Y+IS+D
Sbjct: 31 RPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISIDP 90
Query: 176 DNISRSSSTYIGKLRSNFLGTKFIIYDTQPPHTSANITPSGCTSRRFYXXXXXXXXXXGS 235
N+SR +IGKLRSN LG +F ++D +G +R Y
Sbjct: 91 TNLSRGGENFIGKLRSNLLGNRFTVFD------------NGQNPQRGYSTNVASLRQ--- 135
Query: 236 YNIAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRSISFS 295
+A + YE NVLG RGPRRM I+ + A + V + PR+ D +
Sbjct: 136 -ELAAVIYETNVLGFRGPRRMTVIIPGMSAENERV--------PIRPRNASDGLLVRWQN 186
Query: 296 KSLDHSVDFSSARFSEIGALREDDEDGKLRPLILKNKPPRWHEQLQCWCLNFRGRVTVAS 355
K+L+ ++ L NKPP W++ + LNF+GRVT AS
Sbjct: 187 KTLESLIE-------------------------LHNKPPVWNDDSGSYTLNFQGRVTQAS 221
Query: 356 VKNFQLIXXXXXXXXXXXXXXXXXXEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICL 415
VKNFQ++ + D I+LQFG+V +D FT+DYRYPL A QAFAI L
Sbjct: 222 VKNFQIVHAD---------------DPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIAL 266
Query: 416 SSFDTKLACE 425
SSFD KLACE
Sbjct: 267 SSFDGKLACE 276
>pdb|1I7E|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Bound To
Phosphatidylinositol 4,5-Bis-Phosphate
Length = 265
Score = 171 bits (432), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 108/314 (34%), Positives = 162/314 (51%), Gaps = 68/314 (21%)
Query: 116 QPGARDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGK--FLLSAKRTRRTTCTEYVISM 173
+P + TI+C I RDK + +F L E+GK FLL+ ++ +++ + Y+IS+
Sbjct: 16 RPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLISV 75
Query: 174 DADNISRSSSTYIGKLRSNFLGTKFIIYDT--QPPHTSANITPSGCTSRRFYXXXXXXXX 231
D ++SR +YIGKLRSN +GTKF +YD P S++ SG +
Sbjct: 76 DPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGTLRQE---------- 125
Query: 232 XXGSYNIAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRS 291
+A + YE NVLG +GPR+M I +P ++ V + + PR+ ++ +
Sbjct: 126 ------LAAVCYETNVLGFKGPRKMSVI---VPGMNM-----VHERVCIRPRNEHETLLA 171
Query: 292 ISFSKSLDHSVDFSSARFSEIGALREDDEDGKLRPLILKNKPPRWHEQLQCWCLNFRGRV 351
+K+ + ++ L+NK P W++ + + LNF GRV
Sbjct: 172 RWQNKNTESIIE-------------------------LQNKTPVWNDDTESYVLNFHGRV 206
Query: 352 TVASVKNFQLIXXXXXXXXXXXXXXXXXXEHDKIILQFGKVGKDMFTMDYRYPLSAFQAF 411
T ASVKNFQ+I + D I++QFG+V +D+FTMDY YPL A QAF
Sbjct: 207 TQASVKNFQIIHGN---------------DPDYIVMQFGRVAEDVFTMDYNYPLCALQAF 251
Query: 412 AICLSSFDTKLACE 425
AI LSSFD+KLACE
Sbjct: 252 AIALSSFDSKLACE 265
>pdb|3C5N|A Chain A, Structure Of Human Tulp1 In Complex With Ip3
pdb|3C5N|B Chain B, Structure Of Human Tulp1 In Complex With Ip3
Length = 246
Score = 161 bits (408), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 101/304 (33%), Positives = 146/304 (48%), Gaps = 64/304 (21%)
Query: 116 QPGARDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDA 175
+P + T++C + RDK + ++ L E FLL+ ++ +R+ Y+IS+D
Sbjct: 7 RPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISIDP 66
Query: 176 DNISRSSSTYIGKLRSNFLGTKFIIYDTQPPHTSANITPSGCTSRRFYXXXXXXXXXXGS 235
N+SR +IGKLRSN LG +F ++D +G +R Y
Sbjct: 67 TNLSRGGENFIGKLRSNLLGNRFTVFD------------NGQNPQRGYSTNVASLRQ--- 111
Query: 236 YNIAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRSISFS 295
+A + YE NVLG RGPRRM I+ + A + V + PR+ D +
Sbjct: 112 -ELAAVIYETNVLGFRGPRRMTVIIPGMSAENERV--------PIRPRNASDGLLVRWQN 162
Query: 296 KSLDHSVDFSSARFSEIGALREDDEDGKLRPLILKNKPPRWHEQLQCWCLNFRGRVTVAS 355
K+L+ ++ L NKPP W++ + LNF+GRVT AS
Sbjct: 163 KTLESLIE-------------------------LHNKPPVWNDDSGSYTLNFQGRVTQAS 197
Query: 356 VKNFQLIXXXXXXXXXXXXXXXXXXEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICL 415
VKNFQ++ + D I+LQFG+V +D FT+DYRYPL A QAFAI L
Sbjct: 198 VKNFQIV---------------HADDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIAL 242
Query: 416 SSFD 419
SSFD
Sbjct: 243 SSFD 246
>pdb|3ZXA|C Chain C, Structure And Assembly Of Turnip Crinkle Virus I. X-Ray
Crystallographic Structure Analysis At 3.2 A Resolution
pdb|3ZX8|A Chain A, Cryo-Em Reconstruction Of Native And Expanded Turnip
Crinkle Virus
pdb|3ZX8|B Chain B, Cryo-Em Reconstruction Of Native And Expanded Turnip
Crinkle Virus
pdb|3ZX8|C Chain C, Cryo-Em Reconstruction Of Native And Expanded Turnip
Crinkle Virus
pdb|3ZX9|A Chain A, Cryo-Em Reconstruction Of Native And Expanded Turnip
Crinkle Virus
pdb|3ZX9|B Chain B, Cryo-Em Reconstruction Of Native And Expanded Turnip
Crinkle Virus
pdb|3ZX9|C Chain C, Cryo-Em Reconstruction Of Native And Expanded Turnip
Crinkle Virus
Length = 347
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 163 RTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPHTSANITPS 215
R T+ +S D I+RS S I L+ N DT+P +T+A + PS
Sbjct: 67 REVSTQPRVSTARDGITRSGSELITTLKKN--------TDTEPKYTTAVLNPS 111
>pdb|1TVC|A Chain A, Fad And Nadh Binding Domain Of Methane Monooxygenase
Reductase From Methylococcus Capsulatus (Bath)
Length = 250
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 283 RSLEDSFRSISFSKSLDH-SVDFSSARFSEIGALREDDEDGKLRPLILKNKPP 334
+SLE S R+++ + H S D+ + S I ALRED E P I PP
Sbjct: 167 KSLERSMRNLTVKACVWHPSGDWEGEQGSPIDALREDLESSDANPDIYLCGPP 219
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 274 VPGQPELLPRSLEDSFRSISFSKSLDHSVDFSSARFSEIGALREDDEDGKLRPLILKNKP 333
P QP L+PR+ ED F+ I+ ++ ++ + + + S E D L ++ NKP
Sbjct: 157 TPDQPGLIPRTCEDLFQRIASAQDETPNISY-NVKVSYFEVYNEHVRD--LLAPVVPNKP 213
Query: 334 PRW 336
P +
Sbjct: 214 PYY 216
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,020,676
Number of Sequences: 62578
Number of extensions: 394121
Number of successful extensions: 919
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 896
Number of HSP's gapped (non-prelim): 11
length of query: 425
length of database: 14,973,337
effective HSP length: 102
effective length of query: 323
effective length of database: 8,590,381
effective search space: 2774693063
effective search space used: 2774693063
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (25.0 bits)