BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014384
(425 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255539555|ref|XP_002510842.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
gi|223549957|gb|EEF51444.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
Length = 331
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 252/334 (75%), Positives = 285/334 (85%), Gaps = 6/334 (1%)
Query: 95 MDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLF 154
M+DERDAEDAIRGLDR EFGRKGRRLRVEWTK ERGIRRPG ++RR STNTRPSKTLF
Sbjct: 1 MEDERDAEDAIRGLDRIEFGRKGRRLRVEWTKQERGIRRPG---NSRRSSTNTRPSKTLF 57
Query: 155 VINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRV 214
VINFDP+HTRT+DLERHFEPYG+I+SVRIRRNFAFVQYE Q+DAT+AL+ATNMSKL DRV
Sbjct: 58 VINFDPHHTRTKDLERHFEPYGRIVSVRIRRNFAFVQYESQDDATKALEATNMSKLMDRV 117
Query: 215 ISVEYAVRDDDDRRNGHSPDRNRDRSPDR---GRRRSPSPYRRERGSPDYGRGSSRSPYR 271
ISVEYAVRDDD+RRNG+SPDR RDRSPDR R+RS SPYRRERGSPDYGRG S PYR
Sbjct: 118 ISVEYAVRDDDERRNGYSPDRGRDRSPDRRSHDRKRSSSPYRRERGSPDYGRGPSPGPYR 177
Query: 272 RERGSPDYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSP 331
RER SPDYGR RSPSPY+RDR SPDYGR SSRSPY++ER HGRG SRSPY R+R SP
Sbjct: 178 RERASPDYGRRRSPSPYKRDRASPDYGRASSRSPYRRERPGSDHGRGSSRSPYHRERASP 237
Query: 332 ENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSPENGRGGSRSPYRRERPSPDNGRVP 391
+NG G S SPY++ K SP+NGR SRSPY RER +P+NGRG SRSPY ++ SP+NGR
Sbjct: 238 DNGRGHSASPYQREKASPDNGRDRSRSPYGRERTNPDNGRGSSRSPYEKDVNSPENGRRT 297
Query: 392 SPNSMPEPRDSPGYDGADSPINERYRSRSPPAED 425
SPNSM E RDSP G +SP++ER++SRSPPA++
Sbjct: 298 SPNSMHEERDSPNEGGIESPMHERFQSRSPPADE 331
Score = 41.6 bits (96), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 57 IFCGNFE-YDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGR 115
+F NF+ + R DLER F YG++ V ++ FAF+ + + DA A+ + ++
Sbjct: 56 LFVINFDPHHTRTKDLERHFEPYGRIVSVRIRRNFAFVQYESQDDATKALEATNMSKL-- 113
Query: 116 KGRRLRVEWTKHERGIRRPG 135
R + VE+ + RR G
Sbjct: 114 MDRVISVEYAVRDDDERRNG 133
>gi|356575923|ref|XP_003556085.1| PREDICTED: arginine/serine-rich-splicing factor RSP40-like [Glycine
max]
Length = 376
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 266/398 (66%), Positives = 300/398 (75%), Gaps = 47/398 (11%)
Query: 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDR 110
+ MRPIFCGNFEYDARQS+LERLFRRYGKVDRVDMKSGFAFIYM+DERDAE AIR LDR
Sbjct: 3 QGKMRPIFCGNFEYDARQSELERLFRRYGKVDRVDMKSGFAFIYMEDERDAEAAIRALDR 62
Query: 111 TEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLER 170
EFGRKGRRLRVEWTKHERG+R+P +S+RR S N RPSKTLFVINFD YHTRTRDLER
Sbjct: 63 VEFGRKGRRLRVEWTKHERGVRKP---ASSRRSSANGRPSKTLFVINFDTYHTRTRDLER 119
Query: 171 HFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNG 230
HFEPYGKI+SVRIRRNFAFVQYE ++DA+RAL+ATNMSKL DRVISVE+AV+DDDDRRNG
Sbjct: 120 HFEPYGKIVSVRIRRNFAFVQYESEDDASRALEATNMSKLLDRVISVEFAVKDDDDRRNG 179
Query: 231 HSPD--RNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRV------ 282
+SP+ R+R R R RRSPSPYRRERGSPDYGRG SPY+RERGSPDYGR
Sbjct: 180 YSPERGRDRHRDRSRDGRRSPSPYRRERGSPDYGRGP--SPYQRERGSPDYGRDRDRSRS 237
Query: 283 ---------------RSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRD 327
RS SP+RR+R + R+SSRSPY KER HG PS+SP R
Sbjct: 238 RSPPRRERASPAYGRRSLSPHRREREGSEPVRDSSRSPYHKERGRTDHGISPSQSPEGRG 297
Query: 328 RGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSPENGRGGSRSPYRRERPSPDN 387
+ SP+NGHGSS SP+ GK SP NG G S SP E+ PSP NG GG
Sbjct: 298 KKSPQNGHGSSRSPHDTGKTSPENGLG-SGSPDEKGNPSPYNGYGG-------------- 342
Query: 388 GRVPSPNSMPEPRDSPGYDGADSPINERYRSRSPPAED 425
SPN+MP+PRDSP Y G +SP++ERYRS+SPPAE+
Sbjct: 343 ----SPNNMPDPRDSPNYGGPESPMHERYRSQSPPAEE 376
>gi|449463727|ref|XP_004149583.1| PREDICTED: arginine/serine-rich-splicing factor RSP40-like [Cucumis
sativus]
Length = 376
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 268/392 (68%), Positives = 298/392 (76%), Gaps = 36/392 (9%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M+PIFCGNFEYDARQ DLERLF RYGKVDRVDMKSGFAFIYM+DERDAEDAIR LDR EF
Sbjct: 1 MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSS-----------ARRPSTNTRPSKTLFVINFDPYH 162
GRKGRRLRVEWTK ERGIRRPG G +RR STNTRPSKTLFVINFDPYH
Sbjct: 61 GRKGRRLRVEWTKQERGIRRPGPGGGGGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYH 120
Query: 163 TRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 222
TRTRDLERHF+PYGKI+SVRIRRNFAFVQYE+QEDATRAL+ TNMSKL DRVISVEYAVR
Sbjct: 121 TRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVR 180
Query: 223 DDDDRRNGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRV 282
DDDD+RNG+SPDRNRDRSPDR +RRS SPYRRERGSPDYG G SRSPYRR+R SPDYG
Sbjct: 181 DDDDKRNGYSPDRNRDRSPDR-KRRSSSPYRRERGSPDYGNGISRSPYRRQRASPDYGSR 239
Query: 283 RSPSPYR--RDRGSPDYGRNSS--RSPYKKERA-AIGHGRGPSRSP-YRRDRGSPENGHG 336
RSPSPY+ R+RGSPDYGR S SPY++ER + H R PS P ++R+R + +
Sbjct: 240 RSPSPYQRERERGSPDYGRGRSPNHSPYRRERERSSDHVRTPSHRPSHQRERPNDDRVPN 299
Query: 337 SSPSPYRKG--KPSPNNGRGPSRSPYERERPS-PENGRGGSRSPYRRERPSPDNGRVPSP 393
SPSPY +G K SP +GRG S SP +RER S P+NG D+G
Sbjct: 300 RSPSPYGRGREKGSP-DGRGTSYSPRDRERSSNPDNGH--------------DHGHDQQQ 344
Query: 394 NSMPEPRDSPGYDGADSPINERYRSRSPPAED 425
++PEP +SP Y G SP Y SRSP AE+
Sbjct: 345 TTIPEPGESPNYGGTQSPKRRGYGSRSPQAEE 376
>gi|358248400|ref|NP_001240131.1| uncharacterized protein LOC100796509 [Glycine max]
gi|255636874|gb|ACU18770.1| unknown [Glycine max]
Length = 374
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 264/396 (66%), Positives = 296/396 (74%), Gaps = 45/396 (11%)
Query: 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDR 110
+ MRPIFCGNFEYDARQS+LERLFRRYGKVDRVDMKSGFAFIYM+DERDAE AIR LDR
Sbjct: 3 QGKMRPIFCGNFEYDARQSELERLFRRYGKVDRVDMKSGFAFIYMEDERDAEAAIRALDR 62
Query: 111 TEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLER 170
EFGRKGRRLRVEWTKHERG+RR +S+RR S RPSKTLFVINFD YHTRTRDLER
Sbjct: 63 VEFGRKGRRLRVEWTKHERGVRR---PASSRRSSAIGRPSKTLFVINFDTYHTRTRDLER 119
Query: 171 HFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNG 230
HFEPYGKI+SVRIRRNFAFVQYE ++DA+RAL+ATNMSKL DRVISVE+AV+DDDDRRNG
Sbjct: 120 HFEPYGKIVSVRIRRNFAFVQYESEDDASRALEATNMSKLLDRVISVEFAVKDDDDRRNG 179
Query: 231 HSPD--RNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRV------ 282
+SP+ R+R R R RRSPSPYR+ERGSPDYGRG SPY+RERGSPDYGR
Sbjct: 180 YSPERGRDRQRDRSRDGRRSPSPYRKERGSPDYGRGP--SPYQRERGSPDYGRDRSRSRS 237
Query: 283 -------------RSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRG 329
RS SPYRR+R + R+SSRSPY KER HG PS+SP R R
Sbjct: 238 PPRRERASPAYGRRSISPYRREREGSEPVRDSSRSPYHKERGRTDHGISPSQSPEGRGRK 297
Query: 330 SPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSPENGRGGSRSPYRRERPSPDNGR 389
SP+NGHGSS SP GK SP NG G S SP E+ PSP NG GG
Sbjct: 298 SPQNGHGSSRSPRDTGKTSPENGHG-SGSPDEKGNPSPYNGYGG---------------- 340
Query: 390 VPSPNSMPEPRDSPGYDGADSPINERYRSRSPPAED 425
SPN++P+PRDSP Y G +SP++ERY S+SPPAE+
Sbjct: 341 --SPNTVPDPRDSPNYGGPESPMHERYHSQSPPAEE 374
>gi|449463729|ref|XP_004149584.1| PREDICTED: arginine/serine-rich-splicing factor RSP40-like [Cucumis
sativus]
gi|449528505|ref|XP_004171244.1| PREDICTED: arginine/serine-rich-splicing factor RSP40-like [Cucumis
sativus]
Length = 367
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 261/384 (67%), Positives = 292/384 (76%), Gaps = 29/384 (7%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M+PIFCGNFEYDARQ DLERLF RYGKVDRVDMKSGFAFIYM+DER+AEDAI LDR EF
Sbjct: 1 MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDEREAEDAIHALDRREF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPS-----TNTRPSKTLFVINFDPYHTRTRDL 168
GRKGRRLRVEWTK ERGIRRP GG TNTRPSKTLFVINFDPYHTR RDL
Sbjct: 61 GRKGRRLRVEWTKQERGIRRPSGGGGGSGGGSRRSSTNTRPSKTLFVINFDPYHTRIRDL 120
Query: 169 ERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRR 228
ERHF+PYGKI++VRIRRNFAFVQYE+QEDATRAL+ TNMSKL DRVISVEYAVRDDD++R
Sbjct: 121 ERHFDPYGKILNVRIRRNFAFVQYELQEDATRALEVTNMSKLMDRVISVEYAVRDDDEKR 180
Query: 229 NGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSPY 288
NG+SPDRNRDRSPDR +RRSPSPYRRERGSPDYG G SRSPYRR+R SPDYG RSPSPY
Sbjct: 181 NGYSPDRNRDRSPDR-KRRSPSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRRSPSPY 239
Query: 289 R--RDRGSPDY--GRNSSRSPYKKERA-AIGHGRGPSRS-PYRRDRGSPENGHGSSPSPY 342
+ R+RGSPDY GR+ SPY++ER + H R PS S P++R+R + + SPSPY
Sbjct: 240 QRERERGSPDYSRGRSPKHSPYRRERERSSDHIRAPSHSPPHQRERPNDDRIPNRSPSPY 299
Query: 343 RKGKPSPNNGRGPSRSPYERERPSPENGRGGSRSPYRRERPSPDNGRVPSPNSMPEPRDS 402
R+ ERER SP GRG S SP RER +PDNG N++ EP +
Sbjct: 300 RR----------------ERERGSPIGGRGRSYSPRDRERLNPDNGHDHQENTVAEPGEC 343
Query: 403 PGYDGADSPINERYR-SRSPPAED 425
P Y G SP + Y SRSP AE+
Sbjct: 344 PSYSGTQSPKHRGYNSSRSPQAEE 367
>gi|357444075|ref|XP_003592315.1| Arginine/serine-rich-splicing factor RSP40 [Medicago truncatula]
gi|355481363|gb|AES62566.1| Arginine/serine-rich-splicing factor RSP40 [Medicago truncatula]
Length = 430
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 265/421 (62%), Positives = 300/421 (71%), Gaps = 30/421 (7%)
Query: 27 KYLPRRLYVLGFRRSHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM 86
++L L LGF + L A M+ IFCGNFEYD R+S+LERLFRRYGKVDRVDM
Sbjct: 18 EFLSSPLLRLGF--LPNSLPSYAHPLKMKAIFCGNFEYDCRESELERLFRRYGKVDRVDM 75
Query: 87 KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN 146
K+GFAFIYM+DERDAE AIR LDR EFGRKGRRLRVEWTK ERG+RRP +R S N
Sbjct: 76 KAGFAFIYMEDERDAEAAIRALDRIEFGRKGRRLRVEWTKQERGVRRP--AERPKRSSAN 133
Query: 147 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATN 206
RPSKTLFVINFD Y TRTRDLERHFEPYGKI+SVRIR+NFAFVQYE ++DA +AL+ATN
Sbjct: 134 ARPSKTLFVINFDTYQTRTRDLERHFEPYGKIVSVRIRKNFAFVQYESEDDACKALEATN 193
Query: 207 MSKLTDRVISVEYAVRDDDDRRNGHSP--DRNRDRSPDRGRRRSPSPYRRERGSPDYGRG 264
SKL DRVISVE+A R DDDRRNGHSP R+R R R RRSPSPYRRERGSPDYGRG
Sbjct: 194 NSKLMDRVISVEFAAR-DDDRRNGHSPDRGRDRQRDRSRDGRRSPSPYRRERGSPDYGRG 252
Query: 265 SSRSPYRRERGSPDYGR--VRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRS 322
SPY+RER SPDYGR RS SP+RR+RGSP YGR + SPY++ER R SRS
Sbjct: 253 P--SPYKRERSSPDYGRGNSRSRSPHRRERGSPAYGRRNP-SPYRRERDGAEAVRDTSRS 309
Query: 323 PYRR----------------DRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPS 366
PY + +R P+ GHGS PSPY K SP NG RSP + PS
Sbjct: 310 PYHKERRRTDRSRSHSLEEGERIEPQKGHGSDPSPYGTVKDSPENGHDRRRSPDAKRNPS 369
Query: 367 PENGRGGSRSPYRRERPSPDNGRVPSPNSMPEPRDSPGYDGADSPINERYR--SRSPPAE 424
P NG GS SP + PSP N SPN+MPEPRDSP Y G +SP+NE+YR S+SPPAE
Sbjct: 370 PFNGSRGSPSPDAKGNPSPYNDYGGSPNTMPEPRDSPNYGGPESPMNEQYRSQSQSPPAE 429
Query: 425 D 425
+
Sbjct: 430 E 430
>gi|388508248|gb|AFK42190.1| unknown [Medicago truncatula]
Length = 388
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 257/394 (65%), Positives = 289/394 (73%), Gaps = 28/394 (7%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M+ IFCGNFEYD R+S+LERLFRRYGKVDRVDMK+GFAFIYM+DERDAE IR LDR EF
Sbjct: 1 MKAIFCGNFEYDCRESELERLFRRYGKVDRVDMKAGFAFIYMEDERDAEAVIRALDRIEF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
GRKGRRLRVEWTK ERG+RRP +R S N RPSKTLFVINFD Y TRTRDLERHFE
Sbjct: 61 GRKGRRLRVEWTKQERGVRRP--AERPKRSSANARPSKTLFVINFDTYQTRTRDLERHFE 118
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSP 233
PYGKI+SVRIR+NFAFVQYE ++DA +AL+ATN SKL DRVISVE+A R DDDRRNGHSP
Sbjct: 119 PYGKIVSVRIRKNFAFVQYESEDDACKALEATNNSKLMDRVISVEFAAR-DDDRRNGHSP 177
Query: 234 --DRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGR--VRSPSPYR 289
R+R R R RRSPSPYRRERGSPDYGRG SPY+RER SPDYGR RS SP+R
Sbjct: 178 DRGRDRQRDRSRDGRRSPSPYRRERGSPDYGRGP--SPYKRERSSPDYGRGNSRSRSPHR 235
Query: 290 RDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRR----------------DRGSPEN 333
R+RGSP YGR + SPY++ER R SRSPY + +R P+
Sbjct: 236 RERGSPAYGRRNP-SPYRRERDGAEAVRDTSRSPYHKERRRTDRSRSHSLEEGERIEPQK 294
Query: 334 GHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSPENGRGGSRSPYRRERPSPDNGRVPSP 393
GHGS PSPY K SP NG RSP + PSP NG GS SP + PSP N SP
Sbjct: 295 GHGSDPSPYGTVKDSPENGHDRRRSPDAKRNPSPFNGSRGSPSPDAKGNPSPYNDYGGSP 354
Query: 394 NSMPEPRDSPGYDGADSPINERYR--SRSPPAED 425
N+MPEPRDSP Y G +SP+NE+YR S+SPPAE+
Sbjct: 355 NTMPEPRDSPNYGGPESPMNEQYRSQSQSPPAEE 388
>gi|224136870|ref|XP_002322436.1| predicted protein [Populus trichocarpa]
gi|222869432|gb|EEF06563.1| predicted protein [Populus trichocarpa]
Length = 343
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 268/366 (73%), Positives = 305/366 (83%), Gaps = 31/366 (8%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MRPIFCGNFEYDARQ++LERLF+RYG+V+RVDMKSGFAFIYM+DERDAEDAIRGLDR EF
Sbjct: 1 MRPIFCGNFEYDARQTELERLFKRYGRVERVDMKSGFAFIYMEDERDAEDAIRGLDRVEF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
GRKGRRLRVEWTK ERGIRRPGG S R STNTRPSKTLFVINFDP+HTRT+DLERHFE
Sbjct: 61 GRKGRRLRVEWTKQERGIRRPGGTS---RRSTNTRPSKTLFVINFDPHHTRTKDLERHFE 117
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSP 233
PYG+I+SVRIRRNFAFVQYE QEDAT+ALDATN+SKL DRVISVEYAVRDDD+R++G+SP
Sbjct: 118 PYGRIVSVRIRRNFAFVQYEAQEDATKALDATNLSKLLDRVISVEYAVRDDDERKDGYSP 177
Query: 234 DRNRDRSPD---RGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSPYRR 290
DR+RDRSPD RRRSPSPYRRERGSPDYGRG SPYR+ERGSPDYGR RSPSPYRR
Sbjct: 178 DRSRDRSPDRRGHDRRRSPSPYRRERGSPDYGRGP--SPYRKERGSPDYGRRRSPSPYRR 235
Query: 291 DRGSPDYGRNSSRSPYKKERAAI----GHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGK 346
DR SPDYGR +SRSPY++ERA +GRGPSRSPYRR+R + +G GSS SPY + +
Sbjct: 236 DRASPDYGRGTSRSPYRRERAGKRISPENGRGPSRSPYRRERSNQGHGRGSSHSPYGRER 295
Query: 347 PSPNNGRGPSRSPYERERPSPENGRGGSRSPYRRERPSPDNGRVPSPNSMPEPRDSPGYD 406
P+P+NGRG SRSP ER+ SPE NG++ SP+S+P+ RDSP
Sbjct: 296 PNPDNGRGSSRSPTERDGDSPE------------------NGQLRSPSSIPDERDSPN-G 336
Query: 407 GADSPI 412
GA+SP+
Sbjct: 337 GAESPM 342
>gi|41323931|gb|AAS00039.1| splicing factor-like protein [Vitis riparia]
Length = 478
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 273/475 (57%), Positives = 308/475 (64%), Gaps = 108/475 (22%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MRPIFCGNF+YDARQSDLERLFRRYGKVDRVDMK+GFAFIYM+DERDAEDAIRGLDRT F
Sbjct: 1 MRPIFCGNFDYDARQSDLERLFRRYGKVDRVDMKTGFAFIYMEDERDAEDAIRGLDRTGF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
GRKGRRLRVEWTK ERGIRR S +RR STN RP+KTLFVINFDPY+TRTRDLERHF+
Sbjct: 61 GRKGRRLRVEWTKQERGIRR---PSGSRRSSTNLRPAKTLFVINFDPYNTRTRDLERHFD 117
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSP 233
PYGKI+++RIRRNFAF+QYE QEDATRAL+ATNMSKL DRVISVEYAVRDDD+RRNG+SP
Sbjct: 118 PYGKILNIRIRRNFAFIQYESQEDATRALEATNMSKLMDRVISVEYAVRDDDERRNGYSP 177
Query: 234 D-RNRDRSPDRG--RRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYG---------- 280
D R RD+S +R + RS SPYRRERGSPDYGRGSS S YRRER SPDYG
Sbjct: 178 DGRRRDKSSERSYDKGRSLSPYRRERGSPDYGRGSSPSAYRRERASPDYGRDPSPSPRRR 237
Query: 281 --------RVRSPSPYRR---------------------DRGSPDYGRNSSRSPYKKER- 310
R RSPS +RR DR PDYGR S SP ++E+
Sbjct: 238 DRAMPDHGRSRSPSHHRRERTSHDSARGPSRSPYRSERSDRAIPDYGRGRSPSPGRREKI 297
Query: 311 -----------------------AAIGHGRGPSRSPYRRDRGS----------------- 330
A +GRG S S RR+R +
Sbjct: 298 MPDYPDRPSLSPERKEKTGRSEKAIPDYGRGASPSSPRRERTNSDYVRANSRSRSRSQSQ 357
Query: 331 ---------PENGHGSSPSPYRKGKPSPNNGRGPSRS-------------PYERERPSPE 368
P+ GH S SP ++ K +P++GRGPSRS P + ER P+
Sbjct: 358 SPRQRERTKPDYGHERSVSPEQREKANPDHGRGPSRSSPRREYDRGPSQSPQQGERALPD 417
Query: 369 NGRGGSRSPYRRERPSPDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRSPPA 423
RG S SPY+RE SPD R PSPNS E RDSP Y G+ SP+N RYRSRSPPA
Sbjct: 418 YARGPSDSPYQRESISPDYDRGPSPNSKREERDSPNYGGSASPMNGRYRSRSPPA 472
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 94/195 (48%), Gaps = 53/195 (27%)
Query: 241 PDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRER------GSPDYGRVRSPSPYRRDRGS 294
PD GR RSPSP RRE+ PDY S SP R+E+ PDYGR SPS RR+R +
Sbjct: 281 PDYGRGRSPSPGRREKIMPDYPDRPSLSPERKEKTGRSEKAIPDYGRGASPSSPRRERTN 340
Query: 295 --------------------------PDYGRNSSRSPYKKERAAIGHGRGPSRSPYRR-- 326
PDYG S SP ++E+A HGRGPSRS RR
Sbjct: 341 SDYVRANSRSRSRSQSQSPRQRERTKPDYGHERSVSPEQREKANPDHGRGPSRSSPRREY 400
Query: 327 DRG---SPENGH--------GSSPSPYRKGKPSPNNGRGPSRSPYERERPSPE------- 368
DRG SP+ G G S SPY++ SP+ RGPS + ER SP
Sbjct: 401 DRGPSQSPQQGERALPDYARGPSDSPYQRESISPDYDRGPSPNSKREERDSPNYGGSASP 460
Query: 369 -NGRGGSRSPYRRER 382
NGR SRSP RER
Sbjct: 461 MNGRYRSRSPPARER 475
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 226 DRRNGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSP 285
DR SP + PD R S SPY+RE SPDY RG S + R ER SP+YG
Sbjct: 401 DRGPSQSPQQGERALPDYARGPSDSPYQRESISPDYDRGPSPNSKREERDSPNYG----- 455
Query: 286 SPYRRDRGSPDYGRNSSRSPYKKERA 311
SP GR SRSP +ER+
Sbjct: 456 -----GSASPMNGRYRSRSPPARERS 476
>gi|359490360|ref|XP_002279907.2| PREDICTED: arginine/serine-rich-splicing factor RSP40-like [Vitis
vinifera]
Length = 480
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 273/475 (57%), Positives = 307/475 (64%), Gaps = 108/475 (22%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MRPIFCGNF+YDARQSDLERLFRRYGKVDRVDMK+GFAFIYM+DERDAEDAIRGLDRT F
Sbjct: 3 MRPIFCGNFDYDARQSDLERLFRRYGKVDRVDMKTGFAFIYMEDERDAEDAIRGLDRTGF 62
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
GRKGRRLRVEWTK ERGIRR S +RR STN RP+KTLFVINFDPY+TRTRDLERHF+
Sbjct: 63 GRKGRRLRVEWTKQERGIRR---PSGSRRSSTNLRPAKTLFVINFDPYNTRTRDLERHFD 119
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSP 233
PYGKI+++RIRRNFAF+QYE QEDATRAL+ATNMSKL DRVISVEYAVRDDD+RRNG+SP
Sbjct: 120 PYGKILNIRIRRNFAFIQYESQEDATRALEATNMSKLMDRVISVEYAVRDDDERRNGYSP 179
Query: 234 D-RNRDRSPDRG--RRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGR--------- 281
D R RD+S +R + RS SPYRRERGSPDYGRGSS S YRRER SPDYGR
Sbjct: 180 DGRRRDKSSERSYDKGRSLSPYRRERGSPDYGRGSSPSAYRRERASPDYGRDPSPSPRRR 239
Query: 282 ---------VRSPSPYRR---------------------DRGSPDYGRNSSRSPYKKER- 310
RSPS +RR DR PDYGR S SP ++E+
Sbjct: 240 DRAIPDHGRSRSPSHHRRERTSHDSARGPSRSPYRSERSDRAIPDYGRGRSPSPGRREKI 299
Query: 311 -----------------------AAIGHGRGPSRSPYRRDRGS----------------- 330
A +GRG S S RR+R +
Sbjct: 300 MPDYPDRPSLSPERKEKTGRSEKAIPDYGRGASPSSPRRERTNSDYVRANSRSRSRSQSQ 359
Query: 331 ---------PENGHGSSPSPYRKGKPSPNNGRGPSRS-------------PYERERPSPE 368
P+ GH S SP ++ K +P+ GRGPSRS P + ER P+
Sbjct: 360 SPRQRERTKPDYGHERSVSPEQREKANPDYGRGPSRSSPRREYDRGPSQSPQQGERALPD 419
Query: 369 NGRGGSRSPYRRERPSPDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRSPPA 423
RG S SPY+RE SPD R PSPNS E RDSP Y G+ SP+N RYRSRSPPA
Sbjct: 420 YSRGPSDSPYQRESISPDYDRGPSPNSKREERDSPNYGGSASPMNGRYRSRSPPA 474
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 88/158 (55%), Gaps = 21/158 (13%)
Query: 241 PDRGRRRSPSPYRRERGSPDYGRGSSRSPYRR--------ERGSPDYGRVRSPSPYRRDR 292
PD GR SPS RRER + DY R +SRS R ER PDYG RS SP +R++
Sbjct: 325 PDYGRGASPSSPRRERTNSDYVRANSRSRSRSQSQSPRQRERTKPDYGHERSVSPEQREK 384
Query: 293 GSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNG 352
+PDYGR SRS ++E + RGPS+SP + +R P+ G S SPY++ SP+
Sbjct: 385 ANPDYGRGPSRSSPRRE-----YDRGPSQSPQQGERALPDYSRGPSDSPYQRESISPDYD 439
Query: 353 RGPSRSPYERERPSPE--------NGRGGSRSPYRRER 382
RGPS + ER SP NGR SRSP RER
Sbjct: 440 RGPSPNSKREERDSPNYGGSASPMNGRYRSRSPPARER 477
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 226 DRRNGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSP 285
DR SP + PD R S SPY+RE SPDY RG S + R ER SP+YG
Sbjct: 403 DRGPSQSPQQGERALPDYSRGPSDSPYQRESISPDYDRGPSPNSKREERDSPNYG----- 457
Query: 286 SPYRRDRGSPDYGRNSSRSPYKKERA 311
SP GR SRSP +ER+
Sbjct: 458 -----GSASPMNGRYRSRSPPARERS 478
>gi|147863191|emb|CAN82624.1| hypothetical protein VITISV_021436 [Vitis vinifera]
Length = 479
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 245/345 (71%), Positives = 275/345 (79%), Gaps = 15/345 (4%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MRPIFCGNF+YDARQSDLERLFRRYGKVDRVDMK+GFAFIYM+DERDAEDAIRGLDRT F
Sbjct: 1 MRPIFCGNFDYDARQSDLERLFRRYGKVDRVDMKTGFAFIYMEDERDAEDAIRGLDRTGF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
GRKGRRLRVEWTK ERGIRR S +RR STN RP+KTLFVINFDPY+TRTRDLERHF+
Sbjct: 61 GRKGRRLRVEWTKQERGIRR---PSGSRRSSTNLRPAKTLFVINFDPYNTRTRDLERHFD 117
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSP 233
PYGKI+++RIRRNFAF+QYE QEDATRAL+ATNMSKL DRVISVEYAVRDDD+RRNG+SP
Sbjct: 118 PYGKILNIRIRRNFAFIQYESQEDATRALEATNMSKLMDRVISVEYAVRDDDERRNGYSP 177
Query: 234 D-RNRDRSPDRG--RRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSPYRR 290
D R RD+S +R + RS SPYRRERGSPDYGRGSS S YRRER SPDYGR SPSP RR
Sbjct: 178 DGRRRDKSSERSYDKGRSLSPYRRERGSPDYGRGSSPSAYRRERASPDYGRDPSPSPRRR 237
Query: 291 DRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPY---RRDRGSPENGHGSSPSPYRKGKP 347
DR PD+GR+ S S +++ER + RGPSRSPY R DR P+ G G SPSP R+ K
Sbjct: 238 DRAIPDHGRSRSPSHHRRERTSHDSARGPSRSPYRSERSDRAIPDYGRGRSPSPGRREKI 297
Query: 348 SPNNGRGPSRSPYERERPS------PENGRGGSRSPYRRERPSPD 386
P+ PS SP +E+ P+ GRG S S RRER + D
Sbjct: 298 MPDYPDRPSLSPERKEKTGRSEKAIPDYGRGASPSSPRRERTNSD 342
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 89/159 (55%), Gaps = 22/159 (13%)
Query: 241 PDRGRRRSPSPYRRERGSPDYGRGSSRSPYRR--------ERGSPDYGRVRSPSPYRRDR 292
PD GR SPS RRER + DY R +SRS R ER PDYG RS SP +R++
Sbjct: 323 PDYGRGASPSSPRRERTNSDYVRANSRSRSRSQSQSPRQRERTKPDYGHERSVSPEQREK 382
Query: 293 GSPDYGRNSSRS-PYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNN 351
+PDYGR SRS P ++E + RGPS+SP + +R P+ G S SPY++ SP+
Sbjct: 383 ANPDYGRGPSRSSPQRRE-----YDRGPSQSPQQGERALPDYSRGPSDSPYQRESISPDY 437
Query: 352 GRGPSRSPYERERPSPE--------NGRGGSRSPYRRER 382
RGPS + ER SP NGR SRSP RER
Sbjct: 438 DRGPSPNSKREERDSPNYGGSASPMNGRYRSRSPPARER 476
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 43/72 (59%), Gaps = 8/72 (11%)
Query: 248 SPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSPYRRDRGSPDY--------GR 299
S SP + ER PDY RG S SPY+RE SPDY R SP+ R +R SP+Y GR
Sbjct: 406 SQSPQQGERALPDYSRGPSDSPYQRESISPDYDRGPSPNSKREERDSPNYGGSASPMNGR 465
Query: 300 NSSRSPYKKERA 311
SRSP +ER+
Sbjct: 466 YRSRSPPARERS 477
Score = 41.2 bits (95), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 52/104 (50%), Gaps = 20/104 (19%)
Query: 315 HGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSPENGRGGS 374
+ +G S SPYRR+RGSP+ G G P S Y RER SP+ GR S
Sbjct: 190 YDKGRSLSPYRRERGSPDYG----------------RGSSP--SAYRRERASPDYGRDPS 231
Query: 375 RSPYRRERPSPDNGRVPSPNSMPEPRDSPGYDGADSPINERYRS 418
SP RR+R PD+GR SP+ R S +D A P YRS
Sbjct: 232 PSPRRRDRAIPDHGRSRSPSHHRRERTS--HDSARGPSRSPYRS 273
>gi|224120150|ref|XP_002318257.1| predicted protein [Populus trichocarpa]
gi|222858930|gb|EEE96477.1| predicted protein [Populus trichocarpa]
Length = 329
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 224/350 (64%), Positives = 257/350 (73%), Gaps = 45/350 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MR IFCGNFEYDARQ++LERLF+RYG+V+RVDMK+GFAFIYM+DERDAEDAIRGLDR EF
Sbjct: 1 MRSIFCGNFEYDARQTELERLFKRYGRVERVDMKAGFAFIYMEDERDAEDAIRGLDRVEF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
GRKGRRL VEWTK ERG R+PGG S R S NTRPSKTLFVINFDP+HTRT+DLERHFE
Sbjct: 61 GRKGRRLHVEWTKQERGARQPGGSS---RKSANTRPSKTLFVINFDPHHTRTKDLERHFE 117
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSP 233
PYG+I+SVRIRRNFAFVQYE QEDAT+ALDATNMSKL RVISVEYA RDD +R++GHSP
Sbjct: 118 PYGRIVSVRIRRNFAFVQYEAQEDATKALDATNMSKLLYRVISVEYAARDDGERKDGHSP 177
Query: 234 DRNRDR---------------------SPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRR 272
DR+RDR S D G PSPYR+ER SPD G S SPYRR
Sbjct: 178 DRSRDRSPDRRGHDRRRSPSPYRRERGSTDYG--HGPSPYRKERVSPDSGCRRSPSPYRR 235
Query: 273 ERGSPDYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRR-DRGSP 331
+R SPDYGR + SP RR+R D+G SR PY+K++A+ +G GPS SPY+R ++ SP
Sbjct: 236 DRASPDYGRGSTRSPSRRERAGSDHGHGPSRGPYRKDKASPVNGNGPSDSPYQREEKLSP 295
Query: 332 ENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSPENGRGGSRSPYRRE 381
ENG R PSRSPY RERP+P+ GR S SP R+
Sbjct: 296 ENG------------------RVPSRSPYGRERPNPDKGRTSSHSPSERD 327
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 70/114 (61%), Gaps = 11/114 (9%)
Query: 309 ERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSPE 368
ER + +G GPS PYR++R SP++G SPSPYR+ + SP+ GRG +RSP RER +
Sbjct: 202 ERGSTDYGHGPS--PYRKERVSPDSGCRRSPSPYRRDRASPDYGRGSTRSPSRRERAGSD 259
Query: 369 NGRGGSRSPYRRERPSPDNGRVPSPNSMPEPRDSP-GYDGADSPINERYRSRSP 421
+G G SR PYR+++ SP NG PS DSP + SP N R SRSP
Sbjct: 260 HGHGPSRGPYRKDKASPVNGNGPS--------DSPYQREEKLSPENGRVPSRSP 305
>gi|113205286|gb|ABI34327.1| Arginine/serine-rich splicing factor RSP41, putative [Solanum
demissum]
Length = 373
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 234/383 (61%), Positives = 272/383 (71%), Gaps = 42/383 (10%)
Query: 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLD 109
+ MRPIFCGN EY+ARQS+LERLFRRYGKVDRVDMKSGFAF+YMDDERDAEDAIRGLD
Sbjct: 18 YSGGMRPIFCGNVEYNARQSELERLFRRYGKVDRVDMKSGFAFVYMDDERDAEDAIRGLD 77
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLE 169
R EFGRKGRRLR+EW+K ER RRP ++R+ S++ +PSKTLFVINFDPY TR+R++E
Sbjct: 78 RIEFGRKGRRLRIEWSKEERNGRRP---ETSRKSSSSVKPSKTLFVINFDPYSTRSRNIE 134
Query: 170 RHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRN 229
RHF+PYGKI+++RIRRNFAFVQYE QEDATRALDATNMSKL D+VI+VEYA +DDDDRRN
Sbjct: 135 RHFDPYGKILNIRIRRNFAFVQYETQEDATRALDATNMSKLMDQVITVEYANKDDDDRRN 194
Query: 230 GHSPDRNRDRSPDRG--RRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSP 287
G SPDRN DR RG R RS SPY RERGSPDYGR GR RSPSP
Sbjct: 195 GFSPDRNHDRGLKRGYDRGRSRSPYGRERGSPDYGR----------------GRARSPSP 238
Query: 288 YRRDRGSPDYGRNSSRSPYKKER-AAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGK 346
R+ R SPDYGR S +P +ER + G GR P+ R++R +P++G+G SP+P R
Sbjct: 239 IRQGRSSPDYGRRPSSNPNHRERDSEYGSGRSPN---IRKER-NPDHGNGHSPNPRRLRA 294
Query: 347 PSPNNGRGPSRSPYE----RERPSPENGRGGSRSPYRRERPSPDN--GRVPSPNSMPEPR 400
S N G SP E PSP R G R Y SPD+ GR SP S PE
Sbjct: 295 GSEN---GEVHSPPEEGLLESGPSPP--RVGRRGKY-----SPDDYRGRSRSPRSKPEEI 344
Query: 401 DSPGYDGADSPINERYRSRSPPA 423
SP Y A+SP+ ER+RS SPP
Sbjct: 345 GSPRYAAAESPLPERHRSLSPPT 367
>gi|15235112|ref|NP_194280.1| arginine/serine-rich-splicing factor RSP40 [Arabidopsis thaliana]
gi|334186916|ref|NP_001190837.1| arginine/serine-rich-splicing factor RSP40 [Arabidopsis thaliana]
gi|4033468|sp|P92965.2|RSP40_ARATH RecName: Full=Arginine/serine-rich-splicing factor RSP40
gi|2582641|emb|CAA67800.1| splicing factor [Arabidopsis thaliana]
gi|2980800|emb|CAA18176.1| splicing factor At-SRp40 [Arabidopsis thaliana]
gi|332659667|gb|AEE85067.1| arginine/serine-rich-splicing factor RSP40 [Arabidopsis thaliana]
gi|332659670|gb|AEE85070.1| arginine/serine-rich-splicing factor RSP40 [Arabidopsis thaliana]
Length = 350
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 235/382 (61%), Positives = 280/382 (73%), Gaps = 42/382 (10%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M+P+FCGNFEYDAR+ DLERLFR+YGKV+RVDMK+GFAF+YM+DERDAEDAIR LDR EF
Sbjct: 1 MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
GRKGRRLRVEWTK ERG + GG S R S++ RPSKTLFVINFD +TRTRDLE+HFE
Sbjct: 61 GRKGRRLRVEWTKSERGGDKRSGGGSRRS-SSSMRPSKTLFVINFDADNTRTRDLEKHFE 119
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSP 233
PYGKI++VRIRRNFAF+QYE QEDATRALDA+N SKL D+VISVEYAV+DDD R NGHSP
Sbjct: 120 PYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNGHSP 179
Query: 234 DRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSS-RSPYRRERGSPDYGRVRSPSPYRRD- 291
+R RDRS RRRSPSPY+RERGSPDYGRG+S + YR+ER SPDYGR RSPSPY++
Sbjct: 180 ERRRDRS-PERRRRSPSPYKRERGSPDYGRGASPVAAYRKERTSPDYGRRRSPSPYKKSR 238
Query: 292 RGSPDYGRN--SSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSP 349
RGSP+YGR+ + SP ++ER A SP+ Y + SP
Sbjct: 239 RGSPEYGRDRRGNDSPRRRERVA-------------------------SPTKYSR---SP 270
Query: 350 NNGR---GPSRSPYERERPSPENGRGGSRSPY---RRERPSPDNGRVPSPNSMPEPRDSP 403
NN R P+ SP+++E SP NG G SP R R SP+NG+V SP S+
Sbjct: 271 NNKRERMSPNHSPFKKE--SPRNGVGEVESPIERRERSRSSPENGQVESPGSIGRRDSDG 328
Query: 404 GYDGADSPINERYRSRSPPAED 425
GYDGA+SP+ + RSPPA++
Sbjct: 329 GYDGAESPMQKSRSPRSPPADE 350
>gi|1667582|gb|AAB18813.1| splicing factor At-SRp40 [Arabidopsis thaliana]
Length = 350
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 231/382 (60%), Positives = 279/382 (73%), Gaps = 42/382 (10%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M+P+FCGNFEYDAR+ DLERLFR+YG+V+RVDMK+GFAF+YM+DERDAEDAIR LDR EF
Sbjct: 1 MKPVFCGNFEYDAREGDLERLFRKYGRVERVDMKAGFAFVYMEDERDAEDAIRALDRFEF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
GR+GR LRVEWTK ERG + GG S R S++ RPSKTLFVINFD +TRTRDLE+HFE
Sbjct: 61 GRRGRTLRVEWTKSERGGDKRSGGGSRRS-SSSMRPSKTLFVINFDADNTRTRDLEKHFE 119
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSP 233
PYGKI++VRIRRNFAF+QYE QEDATRALDA+N SKL D+VISVEYAV+DDD R NGHSP
Sbjct: 120 PYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNGHSP 179
Query: 234 DRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSS-RSPYRRERGSPDYGRVRSPSPYRRD- 291
+R RDRS RRRSP+PY+RERGSPDYGRG+S + YR+ER SPDYGR RSPSPY++
Sbjct: 180 ERRRDRS-PERRRRSPTPYKRERGSPDYGRGASPVAAYRKERTSPDYGRRRSPSPYKKSR 238
Query: 292 RGSPDYGRN--SSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSP 349
RGSP+YGR+ + SP ++ER A SP+ Y + SP
Sbjct: 239 RGSPEYGRDRRGNDSPRRRERVA-------------------------SPTKYSR---SP 270
Query: 350 NNGR---GPSRSPYERERPSPENGRGGSRSPY---RRERPSPDNGRVPSPNSMPEPRDSP 403
NN R P+ SP+++E SP NG G SP R R SP+NG+V SP S+
Sbjct: 271 NNKRERMSPNHSPFKKE--SPRNGVGEVESPIERRERSRSSPENGQVESPGSIGRRDSDG 328
Query: 404 GYDGADSPINERYRSRSPPAED 425
GYDGA+SP+ + RSPPA++
Sbjct: 329 GYDGAESPMQKSRSPRSPPADE 350
>gi|7269400|emb|CAB81360.1| splicing factor At-SRp40 [Arabidopsis thaliana]
Length = 349
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 234/381 (61%), Positives = 279/381 (73%), Gaps = 42/381 (11%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFG 114
+P+FCGNFEYDAR+ DLERLFR+YGKV+RVDMK+GFAF+YM+DERDAEDAIR LDR EFG
Sbjct: 1 KPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEFG 60
Query: 115 RKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEP 174
RKGRRLRVEWTK ERG + GG S R S++ RPSKTLFVINFD +TRTRDLE+HFEP
Sbjct: 61 RKGRRLRVEWTKGERGGDKRSGGGSRRS-SSSMRPSKTLFVINFDADNTRTRDLEKHFEP 119
Query: 175 YGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSPD 234
YGKI++VRIRRNFAF+QYE QEDATRALDA+N KL D+VISVEYAV+DDD R NGHSP+
Sbjct: 120 YGKIVNVRIRRNFAFIQYEAQEDATRALDASNNRKLMDKVISVEYAVKDDDARGNGHSPE 179
Query: 235 RNRDRSPDRGRRRSPSPYRRERGSPDYGRGSS-RSPYRRERGSPDYGRVRSPSPYRRD-R 292
R RDRS RRRSPSPY+RERGSPDYGRG+S + YR+ER SPDYGR RSPSPY++ R
Sbjct: 180 RRRDRS-PERRRRSPSPYKRERGSPDYGRGASPVAAYRKERTSPDYGRRRSPSPYKKSRR 238
Query: 293 GSPDYGRN--SSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPN 350
GSP+YGR+ + SP ++ER A SP+ Y + SPN
Sbjct: 239 GSPEYGRDRRGNDSPRRRERVA-------------------------SPTKYSR---SPN 270
Query: 351 NGR---GPSRSPYERERPSPENGRGGSRSPY---RRERPSPDNGRVPSPNSMPEPRDSPG 404
N R P+ SP+++E SP NG G SP R R SP+NG+V SP S+ G
Sbjct: 271 NKRERMSPNHSPFKKE--SPRNGVGEVESPIERRERSRSSPENGQVESPGSIGRRDSDGG 328
Query: 405 YDGADSPINERYRSRSPPAED 425
YDGA+SP+ +R RSPPA++
Sbjct: 329 YDGAESPMQKRRSPRSPPADE 349
>gi|297803572|ref|XP_002869670.1| hypothetical protein ARALYDRAFT_492278 [Arabidopsis lyrata subsp.
lyrata]
gi|297315506|gb|EFH45929.1| hypothetical protein ARALYDRAFT_492278 [Arabidopsis lyrata subsp.
lyrata]
Length = 348
Score = 364 bits (935), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 238/382 (62%), Positives = 279/382 (73%), Gaps = 44/382 (11%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M+P+FCGNFEYDAR+ DLERLFR+YGKV+RVDMK+GFAF+YM+DERDAEDAIR LDR EF
Sbjct: 1 MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRIEF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
GRKGRRLRVEWTK ER R GG S R S+ RPSKTLFVINFD +TRTRDLERHFE
Sbjct: 61 GRKGRRLRVEWTKSEREGDRRSGGGSRRS-SSGMRPSKTLFVINFDADNTRTRDLERHFE 119
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSP 233
PYGKI++VRIRRNFAF+QYE QEDATRALDATN SKL D+VISVEYAV+DDD R NGHSP
Sbjct: 120 PYGKILNVRIRRNFAFIQYEAQEDATRALDATNNSKLMDKVISVEYAVKDDDARGNGHSP 179
Query: 234 DRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSS-RSPYRRERGSPDYGRVRSPSPYRRDR 292
+R RDRS RRRSPSPY+RERGSPDYGRG+S + YR++R SPDYGR RSPSPY++ R
Sbjct: 180 ERRRDRS-PERRRRSPSPYKRERGSPDYGRGASPVAAYRKDRTSPDYGRRRSPSPYKKSR 238
Query: 293 -GSPDYGRN--SSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSP 349
GSP+YGR+ + SP ++ER A SP R SP
Sbjct: 239 CGSPEYGRDRRGNDSPRRRERVA-------------------------SPKYSR----SP 269
Query: 350 NNGR---GPSRSPYERERPSPENGRGGSRSPY---RRERPSPDNGRVPSPNSMPEPRDSP 403
NN R P+ SP+++E SP NG G SP R R SP+NG+V SP S+
Sbjct: 270 NNKRERMSPNHSPFKKE--SPRNGVGEVDSPIVRRERSRSSPENGQVESPGSIGRRDSDG 327
Query: 404 GYDGADSPINERYRSRSPPAED 425
GYDGA+SP+ ++ RSRSPPA++
Sbjct: 328 GYDGAESPM-QKSRSRSPPADE 348
>gi|30696140|ref|NP_200017.2| arginine/serine-rich-splicing factor RSP41 [Arabidopsis thaliana]
gi|332008780|gb|AED96163.1| arginine/serine-rich-splicing factor RSP41 [Arabidopsis thaliana]
Length = 357
Score = 348 bits (892), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 240/389 (61%), Positives = 275/389 (70%), Gaps = 49/389 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M+P+FCGNFEYDAR+SDLERLFR+YGKV+RVDMK+GFAF+YM+DERDAEDAIR LDR E+
Sbjct: 1 MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEY 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
GR GRRLRVEWTK++RG +RR S+ RPSKTLFVINFD +TRTRDLERHFE
Sbjct: 61 GRTGRRLRVEWTKNDRGGAG--RSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFE 118
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSP 233
PYGKI++VRIRRNFAF+QYE QEDATRALDATN SKL D+VISVEYAV+DDD R NG+SP
Sbjct: 119 PYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGYSP 178
Query: 234 DRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRV-RSPSPYRRDR 292
+R RDRS RRRSPSPYRRERGSPDYGRG+S ++RER SPDYGR RSPSPY+R R
Sbjct: 179 ERRRDRS-PDRRRRSPSPYRRERGSPDYGRGASPVAHKRERTSPDYGRGRRSPSPYKRAR 237
Query: 293 GSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNG 352
SPDY R+ R +ER A SPENG + SP + G
Sbjct: 238 LSPDYKRDDRR----RERVA-----------------SPENGAVRNRSPRK--------G 268
Query: 353 RGPSRS--PYERER----PSPENGRGGSRSP----------YRRERPSPDNGRVPSPNSM 396
RG SRS PYE+ R P P R SRSP R + SP+NG+V SP +
Sbjct: 269 RGESRSPPPYEKRRESRSPPPYEKRRESRSPPPYEKRRERSRSRSKSSPENGQVESPGQI 328
Query: 397 PEPRDSPGYDGADSPINERYRSRSPPAED 425
E GYDGADSPI E SRSPPAE+
Sbjct: 329 MEVEAGRGYDGADSPIRESSPSRSPPAEE 357
>gi|297792527|ref|XP_002864148.1| hypothetical protein ARALYDRAFT_495275 [Arabidopsis lyrata subsp.
lyrata]
gi|297309983|gb|EFH40407.1| hypothetical protein ARALYDRAFT_495275 [Arabidopsis lyrata subsp.
lyrata]
Length = 357
Score = 347 bits (890), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 240/389 (61%), Positives = 275/389 (70%), Gaps = 49/389 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M+P+FCGNFEYDAR+SDLERLF+RYGKV+RVDMK+GFAF+YM+DERDAEDAIR LDR E+
Sbjct: 1 MKPVFCGNFEYDARESDLERLFKRYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEY 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
GR GRRLRVEWTK++RG +RR S+ RPSKTLFVINFD +TRTRDLERHFE
Sbjct: 61 GRTGRRLRVEWTKNDRGGAG--RSGGSRRSSSGMRPSKTLFVINFDAQNTRTRDLERHFE 118
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSP 233
PYGKI++VRIRRNFAF+QYE QEDATRALDATN SKL D+VISVEYAV+DDD R NG+SP
Sbjct: 119 PYGKIVNVRIRRNFAFIQYESQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGYSP 178
Query: 234 DRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRV-RSPSPYRRDR 292
+R RDRS RRRSPSPYRRERGSPDYGRG+S ++RER SPDYGR RSPSPY+R R
Sbjct: 179 ERRRDRS-PDRRRRSPSPYRRERGSPDYGRGASPVAHKRERTSPDYGRGRRSPSPYKRAR 237
Query: 293 GSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNG 352
SPDY R+ R +ER A SPENG + SP + G
Sbjct: 238 LSPDYKRDDRR----RERVA-----------------SPENGAVRNRSPRK--------G 268
Query: 353 RGPSRS--PYERER----PSPENGRGGSRSP----------YRRERPSPDNGRVPSPNSM 396
RG SRS PYE+ R P P R SRSP R + SP+NG+V SP +
Sbjct: 269 RGESRSPPPYEKRRESRSPPPYEKRRESRSPPPYEKRRERSRSRSKSSPENGQVESPGQI 328
Query: 397 PEPRDSPGYDGADSPINERYRSRSPPAED 425
E GYDGADSPI E SRSPPAE+
Sbjct: 329 MEEEAGRGYDGADSPIRESSPSRSPPAEE 357
>gi|30696138|ref|NP_851174.1| arginine/serine-rich-splicing factor RSP41 [Arabidopsis thaliana]
gi|21542447|sp|P92966.2|RSP41_ARATH RecName: Full=Arginine/serine-rich-splicing factor RSP41
gi|13877817|gb|AAK43986.1|AF370171_1 putative arginine/serine-rich splicing factor RSP41 homolog
[Arabidopsis thaliana]
gi|10177739|dbj|BAB11052.1| arginine/serine-rich splicing factor RSP41 homolog [Arabidopsis
thaliana]
gi|16323490|gb|AAL15239.1| putative arginine/serine-rich splicing factor RSP41 homolog
[Arabidopsis thaliana]
gi|332008779|gb|AED96162.1| arginine/serine-rich-splicing factor RSP41 [Arabidopsis thaliana]
Length = 356
Score = 344 bits (882), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 240/389 (61%), Positives = 275/389 (70%), Gaps = 50/389 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M+P+FCGNFEYDAR+SDLERLFR+YGKV+RVDMK+GFAF+YM+DERDAEDAIR LDR E+
Sbjct: 1 MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEY 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
GR GRRLRVEWTK++RG +RR S+ RPSKTLFVINFD +TRTRDLERHFE
Sbjct: 61 GRTGRRLRVEWTKNDRGGAG--RSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFE 118
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSP 233
PYGKI++VRIRRNFAF+QYE QEDATRALDATN SKL D+VISVEYAV+DDD R NG+SP
Sbjct: 119 PYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGYSP 178
Query: 234 DRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRV-RSPSPYRRDR 292
+R RDRS RRRSPSPYRRERGSPDYGRG+S ++RER SPDYGR RSPSPY+R R
Sbjct: 179 ERRRDRS-PDRRRRSPSPYRRERGSPDYGRGASPVAHKRERTSPDYGRGRRSPSPYKRAR 237
Query: 293 GSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNG 352
SPDY R+ R +ER A SPENG + SP + G
Sbjct: 238 LSPDYKRDDRR----RERVA-----------------SPENGAVRNRSPRK--------G 268
Query: 353 RGPSRS--PYERER----PSPENGRGGSRSP----------YRRERPSPDNGRVPSPNSM 396
RG SRS PYE+ R P P R SRSP R + SP+NG+V SP +
Sbjct: 269 RGESRSPPPYEKRRESRSPPPYEKRRESRSPPPYEKRRERSRSRSKSSPENGQVESPGQI 328
Query: 397 PEPRDSPGYDGADSPINERYRSRSPPAED 425
E GYDGADSPI E SRSPPAE+
Sbjct: 329 MEVEAGRGYDGADSPIRES-PSRSPPAEE 356
>gi|1707370|emb|CAA67799.1| splicing factor [Arabidopsis thaliana]
Length = 356
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 239/389 (61%), Positives = 275/389 (70%), Gaps = 50/389 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M+P+FCGNFEYDAR+SDLERLFR+YGKV+RVDMK+GFAF+YM+DERDAEDAIR LDR E+
Sbjct: 1 MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEY 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
GR GRRLRVEWTK++RG +RR S+ RPSKTLFVINFD +TRTRDLERHFE
Sbjct: 61 GRTGRRLRVEWTKNDRGGAG--RSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFE 118
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSP 233
PYGKI++VRIRRN+AF+QYE QEDATRALDATN SKL D+VISVEYAV+DDD R NG+SP
Sbjct: 119 PYGKIVNVRIRRNYAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGYSP 178
Query: 234 DRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRV-RSPSPYRRDR 292
+R RDRS RRRSPSPYRRERGSPDYGRG+S ++RER SPDYGR RSPSPY+R R
Sbjct: 179 ERRRDRS-PDRRRRSPSPYRRERGSPDYGRGASPVAHKRERTSPDYGRGRRSPSPYKRAR 237
Query: 293 GSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNG 352
SPDY R+ R +ER A SPENG + SP + G
Sbjct: 238 LSPDYKRDDRR----RERVA-----------------SPENGAVRNRSPRK--------G 268
Query: 353 RGPSRS--PYERER----PSPENGRGGSRSP----------YRRERPSPDNGRVPSPNSM 396
RG SRS PYE+ R P P R SRSP R + SP+NG+V SP +
Sbjct: 269 RGESRSPPPYEKRRESRSPPPYEKRRESRSPPPYEKRRERSRSRSKSSPENGQVESPGQI 328
Query: 397 PEPRDSPGYDGADSPINERYRSRSPPAED 425
E GYDGADSPI E SRSPPAE+
Sbjct: 329 MEVEAGRGYDGADSPIRES-PSRSPPAEE 356
>gi|224063963|ref|XP_002301323.1| predicted protein [Populus trichocarpa]
gi|222843049|gb|EEE80596.1| predicted protein [Populus trichocarpa]
Length = 264
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 174/235 (74%), Positives = 198/235 (84%), Gaps = 8/235 (3%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M+ IFCGN +YDARQSD+ERLFRRYG++DRVDMKSGFAF+YM+DERDAEDAIR LD+TEF
Sbjct: 1 MKAIFCGNLDYDARQSDVERLFRRYGRIDRVDMKSGFAFVYMEDERDAEDAIRRLDQTEF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
GRKGRRLRVEWTK ER +P G +RR S N PSKTLFVINFDP HTRTRDLERHF+
Sbjct: 61 GRKGRRLRVEWTKQERD-SKPAG---SRRSSANMTPSKTLFVINFDPIHTRTRDLERHFD 116
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSP 233
PYGKI+S RIRRNFAFVQYE+QEDAT+AL+ATNMSKL DRVISVEYA RDDD+RRNG+SP
Sbjct: 117 PYGKILSTRIRRNFAFVQYELQEDATKALEATNMSKLMDRVISVEYAARDDDERRNGYSP 176
Query: 234 D-RNRDRSPDRG--RRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSP 285
+ R RDRSPDR R RSPSPYRR+RGSPDYG G + + R +RG+ Y + P
Sbjct: 177 ERRGRDRSPDRNYSRERSPSPYRRDRGSPDYGHGQNTNA-RPQRGNHAYEKAEGP 230
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 120/272 (44%), Gaps = 42/272 (15%)
Query: 151 KTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQ---EDATRALDATNM 207
K +F N D Y R D+ER F YG+I V ++ FAFV E + EDA R LD T
Sbjct: 2 KAIFCGNLD-YDARQSDVERLFRRYGRIDRVDMKSGFAFVYMEDERDAEDAIRRLDQTEF 60
Query: 208 SKLTDRVISVEYAVRDDDDRRNGHSPDRNRDRSPDRGRRRSPSPY-RRERGSPDYGRGSS 266
+ R + VE+ ++ RD P RR S + + ++ +
Sbjct: 61 GR-KGRRLRVEWTKQE-------------RDSKPAGSRRSSANMTPSKTLFVINFDPIHT 106
Query: 267 RSPYRRERGSPDYGRVRSPSPYRRDRGSPDYG-RNSSRSPYKKERAAIGHGRGPSRSPYR 325
R+ ER YG++ S + RR+ Y + + + + R S
Sbjct: 107 RTR-DLERHFDPYGKILS-TRIRRNFAFVQYELQEDATKALEATNMSKLMDRVISVEYAA 164
Query: 326 RDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSPENGRGGSRSPYRRERPSP 385
RD NG+ SP R+G+ R P R+ Y RER SP SPYRR+R SP
Sbjct: 165 RDDDERRNGY----SPERRGR-----DRSPDRN-YSRER-SP--------SPYRRDRGSP 205
Query: 386 DNGRVPSPNSMPEPRDSPGYDGADSPINERYR 417
D G + N+ P+ R + Y+ A+ P NERYR
Sbjct: 206 DYGHGQNTNARPQ-RGNHAYEKAEGPENERYR 236
>gi|217071906|gb|ACJ84313.1| unknown [Medicago truncatula]
Length = 289
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 177/230 (76%), Positives = 193/230 (83%), Gaps = 7/230 (3%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M+ IFCGNFEYD R+S+LERLFRRYGKVDRVDMK+GFAFIYM+DERDAE IR LDR EF
Sbjct: 1 MKAIFCGNFEYDCRESELERLFRRYGKVDRVDMKAGFAFIYMEDERDAEAVIRALDRIEF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
GRKGRRLRVEWTK ERG+RRP +R S N RPSKTLFVINFD Y TRTRDLERHFE
Sbjct: 61 GRKGRRLRVEWTKQERGVRRP--AERPKRSSANARPSKTLFVINFDTYQTRTRDLERHFE 118
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSP 233
PYGKI+SVRIR+NFAFVQYE ++DA +AL+ATN SKL DRVISVE+A R DDDRRNGHSP
Sbjct: 119 PYGKIVSVRIRKNFAFVQYESEDDACKALEATNNSKLMDRVISVEFAAR-DDDRRNGHSP 177
Query: 234 --DRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGR 281
R+R R R RRSPSPYRRERGSPDYGRG SPY+RER SPDYGR
Sbjct: 178 DRGRDRQRDRSRDGRRSPSPYRRERGSPDYGRGP--SPYKRERSSPDYGR 225
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 106/252 (42%), Gaps = 41/252 (16%)
Query: 151 KTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDA---TRALDATNM 207
K +F NF+ Y R +LER F YGK+ V ++ FAF+ E + DA RALD
Sbjct: 2 KAIFCGNFE-YDCRESELERLFRRYGKVDRVDMKAGFAFIYMEDERDAEAVIRALDRIEF 60
Query: 208 SKLTDRVISVEYAVRDDDDRRNGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSR 267
+ R + VE+ ++ RR P +RS + R + + +
Sbjct: 61 GR-KGRRLRVEWTKQERGVRRPAERP------------KRSSANARPSKTLFVINFDTYQ 107
Query: 268 SPYR-RERGSPDYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRR 326
+ R ER YG++ S R R +N + Y+ E A + S
Sbjct: 108 TRTRDLERHFEPYGKIVSV----RIR------KNFAFVQYESEDDACKALEATNNSKLMD 157
Query: 327 DRGSPE---------NGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSPENGRGGSRSP 377
S E NGH SP R + + S SPY RER SP+ GRG S P
Sbjct: 158 RVISVEFAARDDDRRNGH--SPDRGRDRQRDRSRDGRRSPSPYRRERGSPDYGRGPS--P 213
Query: 378 YRRERPSPDNGR 389
Y+RER SPD GR
Sbjct: 214 YKRERSSPDYGR 225
Score = 42.0 bits (97), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 28/36 (77%), Gaps = 2/36 (5%)
Query: 339 PSPYRKGKPSPNNGRGPSRSPYERERPSPENGRGGS 374
PSPYR+ + SP+ GRGP SPY+RER SP+ GRG +
Sbjct: 195 PSPYRRERGSPDYGRGP--SPYKRERSSPDYGRGTA 228
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 27/35 (77%), Gaps = 2/35 (5%)
Query: 322 SPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPS 356
SPYRR+RGSP+ G G PSPY++ + SP+ GRG +
Sbjct: 196 SPYRRERGSPDYGRG--PSPYKRERSSPDYGRGTA 228
>gi|225453750|ref|XP_002273751.1| PREDICTED: arginine/serine-rich-splicing factor RSP40-like [Vitis
vinifera]
Length = 252
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 177/237 (74%), Positives = 199/237 (83%), Gaps = 8/237 (3%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M+PIFCGN EYDARQSD+ERLFRRYGKVDRVD+KSGFAF+YMDDERDAEDAIR LDRT F
Sbjct: 1 MKPIFCGNLEYDARQSDVERLFRRYGKVDRVDLKSGFAFVYMDDERDAEDAIRRLDRTVF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
GRKGR+LRVEWTK ERGIRRPGG +R+ S N +PSKTLFVINFDP HTRTRDLERHF+
Sbjct: 61 GRKGRQLRVEWTKQERGIRRPGG---SRKSSANMKPSKTLFVINFDPIHTRTRDLERHFD 117
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV-RDDDDRRNGHS 232
YGKI+++RIRRNFAF+Q+E QEDAT+ALDATNMSK DRVISVEYA DDDDRRNG+S
Sbjct: 118 LYGKILNIRIRRNFAFIQFESQEDATKALDATNMSKFMDRVISVEYAARDDDDDRRNGYS 177
Query: 233 PD-RNRDRSPDR---GRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSP 285
P+ R RD SPDR R RSPSPY R+R SPDYG G++ + RGSP+Y R SP
Sbjct: 178 PERRGRDMSPDRRSHDRGRSPSPYHRDRASPDYGHGANANSRSEPRGSPNYDRDESP 234
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 36/52 (69%)
Query: 371 RGGSRSPYRRERPSPDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRSPP 422
RG S SPY R+R SPD G + NS EPR SP YD +SP+NERY SRSPP
Sbjct: 194 RGRSPSPYHRDRASPDYGHGANANSRSEPRGSPNYDRDESPVNERYHSRSPP 245
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 39/68 (57%), Gaps = 10/68 (14%)
Query: 315 HGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSPENGRGGS 374
H RG S SPY RDR SP+ GHG++ + + + SPN Y+R+ SP N R S
Sbjct: 192 HDRGRSPSPYHRDRASPDYGHGANANSRSEPRGSPN---------YDRDE-SPVNERYHS 241
Query: 375 RSPYRRER 382
RSP RER
Sbjct: 242 RSPPPRER 249
>gi|343171990|gb|AEL98699.1| arginine/serine-rich-splicing factor, partial [Silene latifolia]
Length = 340
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 201/350 (57%), Positives = 229/350 (65%), Gaps = 37/350 (10%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFG 114
RPIFCGNF+++AR SDLERLFRR+GKVDRVDMK+GFAFIYMDDERDA AIR LDRT+FG
Sbjct: 1 RPIFCGNFDFEARASDLERLFRRFGKVDRVDMKNGFAFIYMDDERDAGYAIRALDRTDFG 60
Query: 115 RKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEP 174
RKGRRLRVEWTKHE+G R+P + R S N RPSKTLFVINF P HT+TRDLERHF+P
Sbjct: 61 RKGRRLRVEWTKHEQGGRKP----VSSRKSANLRPSKTLFVINF-PSHTQTRDLERHFDP 115
Query: 175 YGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR-DDDDRRNGHSP 233
YGKI++VRIR NF FVQY+ QEDAT+ALDATNMSK DRVI+VEY+ R DDD RRNG+SP
Sbjct: 116 YGKIVNVRIRGNFGFVQYDSQEDATKALDATNMSKFLDRVITVEYSSRGDDDSRRNGYSP 175
Query: 234 DRNRDR------------------SPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERG 275
DR SPD G SP YRRERGSP YG GSSRSP R +R
Sbjct: 176 DRRVRDRSPDRRRRSPSPFRRERGSPDYGTGPSPISYRRERGSPVYGNGSSRSPRRLQRA 235
Query: 276 SPDYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGH 335
SP Y R RS +P R R SP+Y ++E + R PS R+ G+ +
Sbjct: 236 SPAYNRKRSLTPRRDVRASPEYRGRGRSRSPRREDNGNAYARQPSLVDSDREEGAILDDD 295
Query: 336 GSSPSPYRKGKP--------SPNNGRGPSRSPYERERPSPENGRGGSRSP 377
SP RK SP + R SRSP R RP G SRSP
Sbjct: 296 PEPASPIRKAYSMDRPGVSRSPVDNRYRSRSPLARNRPV-----GESRSP 340
>gi|343171992|gb|AEL98700.1| arginine/serine-rich-splicing factor, partial [Silene latifolia]
Length = 340
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 201/350 (57%), Positives = 229/350 (65%), Gaps = 37/350 (10%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFG 114
RPIFCGNF+++AR SDLERLFRR+GKVDRVDMK+GFAFIYMDDERDA AIR LDRT+FG
Sbjct: 1 RPIFCGNFDFEARASDLERLFRRFGKVDRVDMKNGFAFIYMDDERDAGYAIRALDRTDFG 60
Query: 115 RKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEP 174
RKGRRLRVEWTKHE+G R+P + R S N RPSKTLFVINF P HT+TRDLERHF+P
Sbjct: 61 RKGRRLRVEWTKHEQGGRKP----VSSRKSANLRPSKTLFVINF-PSHTQTRDLERHFDP 115
Query: 175 YGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR-DDDDRRNGHSP 233
YGKI++VRIR NF FVQY+ QEDAT+ALDATNMSK DRVI+VEY+ R DDD RRNG+SP
Sbjct: 116 YGKIVNVRIRGNFGFVQYDSQEDATKALDATNMSKFLDRVITVEYSSRGDDDSRRNGYSP 175
Query: 234 DRNRDR------------------SPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERG 275
DR SPD G SP YRRERGSP YG GSSRSP R +R
Sbjct: 176 DRRVRDRSPDRRRRSPSPFRRERGSPDYGTGPSPISYRRERGSPVYGNGSSRSPRRLQRA 235
Query: 276 SPDYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGH 335
SP Y R RS +P R R SP+Y ++E + R PS R+ G+ +
Sbjct: 236 SPGYNRKRSLTPRRDVRASPEYRGRGRSRSPRREDNGNAYARQPSLVDSDREEGAILDDD 295
Query: 336 GSSPSPYRKGKP--------SPNNGRGPSRSPYERERPSPENGRGGSRSP 377
SP RK SP + R SRSP R RP G SRSP
Sbjct: 296 PEPASPIRKAYSMDRPGVSRSPVDNRYRSRSPLARNRPV-----GESRSP 340
>gi|388513547|gb|AFK44835.1| unknown [Medicago truncatula]
Length = 294
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 171/253 (67%), Positives = 202/253 (79%), Gaps = 13/253 (5%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M+PIFCGN ++DARQSD+ERLFR+YGK+DRVD+KSGFAFIYM+DERDAE AIR LD+TEF
Sbjct: 1 MKPIFCGNLDFDARQSDVERLFRKYGKIDRVDLKSGFAFIYMEDERDAEYAIRRLDQTEF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
GRKGRR+RV WTK ER RR GG S ++ STNT+PSKTLF+INFDP HTRTRDLERHF+
Sbjct: 61 GRKGRRIRVGWTKAERDNRRSGGDS--KKSSTNTKPSKTLFIINFDPVHTRTRDLERHFD 118
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSP 233
PYGKI ++RIRRNFAF+Q+E QE+AT+AL+ATN+SK DRVI+VEYA+RDDD +R+G+SP
Sbjct: 119 PYGKISNLRIRRNFAFIQFETQEEATKALEATNLSKFMDRVITVEYAIRDDDVKRDGYSP 178
Query: 234 DRNRDRSPD-----------RGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRV 282
DR SPD GR RSPSPYRR RGSPDYGRGS+ + RGSP Y R
Sbjct: 179 DRRGRGSPDGRYGRGSPDGRYGRGRSPSPYRRGRGSPDYGRGSNPASRPEPRGSPKYERA 238
Query: 283 RSPSPYRRDRGSP 295
SP+ R D SP
Sbjct: 239 ESPANGRYDSRSP 251
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 64/123 (52%), Gaps = 28/123 (22%)
Query: 322 SPYRRDRGSPEN-----------GHGSSPSPYRKGKPSPNNGRG--------PSRSPYER 362
SP RR RGSP+ G G SPSPYR+G+ SP+ GRG P SP
Sbjct: 177 SPDRRGRGSPDGRYGRGSPDGRYGRGRSPSPYRRGRGSPDYGRGSNPASRPEPRGSPKYE 236
Query: 363 ERPSPENGRGGSRSPYRRERPSPDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRSPP 422
SP NGR SRSP P G +P S PE R SP Y+ A+SP+N RY SRSPP
Sbjct: 237 RAESPANGRYDSRSP-------PPRG--SNPPSRPEARGSPKYERAESPMNRRYDSRSPP 287
Query: 423 AED 425
D
Sbjct: 288 PRD 290
>gi|218189952|gb|EEC72379.1| hypothetical protein OsI_05650 [Oryza sativa Indica Group]
Length = 603
Score = 324 bits (831), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 193/296 (65%), Positives = 224/296 (75%), Gaps = 39/296 (13%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MRP+FCGN +YDARQS++ERLF +YG+V+RVDMKSGFAF+YM+DERDA++AI LDR EF
Sbjct: 325 MRPVFCGNLDYDARQSEIERLFSKYGRVERVDMKSGFAFVYMEDERDADEAIHRLDRIEF 384
Query: 114 GRKGRRLRVEWTKHER-GIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHF 172
GRKGRRLRVEWTK +R G RR G+S R P+ NTRP+KTLFVINFDP +TRTRDLERHF
Sbjct: 385 GRKGRRLRVEWTKEDRSGGRR---GNSKRSPN-NTRPTKTLFVINFDPINTRTRDLERHF 440
Query: 173 EPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHS 232
+ YGKI +VRIRRNFAFVQYE+QEDAT+AL+ TN S L DRVISVEYA+RDDD++RNG+S
Sbjct: 441 DQYGKISNVRIRRNFAFVQYELQEDATKALEGTNGSTLMDRVISVEYALRDDDEKRNGYS 500
Query: 233 PD-RNRDRSPDR--GRRRSPSPY--RRERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSP 287
P+ R RDRSPDR R RS SPY RERGSPDYGRG RERGSPDYGR
Sbjct: 501 PERRGRDRSPDRRDYRGRSASPYGRGRERGSPDYGRG-------RERGSPDYGR------ 547
Query: 288 YRRDRGSPDYGRNSS----------RSP---YKKER--AAIGHGRGPSRSPYRRDR 328
DRGSPDY R +S SP Y +ER A+ G+ R SRSP R +R
Sbjct: 548 -GGDRGSPDYHRGASPQGGNKGDERGSPPNNYDRERREASPGYDRPRSRSPARYER 602
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 120/305 (39%), Gaps = 71/305 (23%)
Query: 153 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKL-- 210
+F N D Y R ++ER F YG++ V ++ FAFV E + DA A+ + +
Sbjct: 328 VFCGNLD-YDARQSEIERLFSKYGRVERVDMKSGFAFVYMEDERDADEAIHRLDRIEFGR 386
Query: 211 TDRVISVEYAVRDDDDRRNGHSP-----------------------DRNRDRSPDRGRRR 247
R + VE+ D R G+S R+ +R D+ +
Sbjct: 387 KGRRLRVEWTKEDRSGGRRGNSKRSPNNTRPTKTLFVINFDPINTRTRDLERHFDQYGKI 446
Query: 248 SPSPYRRERGSPDYG-RGSSRSPYRRERGSPDYGRVRSPSPYRRDRGSPDYGRNSSRSPY 306
S RR Y + + GS RV S RD + R+ Y
Sbjct: 447 SNVRIRRNFAFVQYELQEDATKALEGTNGSTLMDRVISVEYALRDD-------DEKRNGY 499
Query: 307 KKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKP--SPNNGRGPSRSPYERER 364
ER RG RSP RRD G S SPY +G+ SP+ GRG RER
Sbjct: 500 SPER------RGRDRSPDRRDY------RGRSASPYGRGRERGSPDYGRG-------RER 540
Query: 365 PSPENGRGGSR-SPYRRERPSPDNG-----RVPSPNSMPEPR--DSPGYDGADSPINERY 416
SP+ GRGG R SP SP G R PN+ R SPGYD R
Sbjct: 541 GSPDYGRGGDRGSPDYHRGASPQGGNKGDERGSPPNNYDRERREASPGYD--------RP 592
Query: 417 RSRSP 421
RSRSP
Sbjct: 593 RSRSP 597
>gi|217071698|gb|ACJ84209.1| unknown [Medicago truncatula]
Length = 294
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 170/253 (67%), Positives = 201/253 (79%), Gaps = 13/253 (5%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M+PIFCGN ++DARQSD+ERLFR+YGK+DRVD+KSGFAFIYM+ ERDAE AIR LD+TEF
Sbjct: 1 MKPIFCGNLDFDARQSDVERLFRKYGKIDRVDLKSGFAFIYMEGERDAEYAIRRLDQTEF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
GRKGRR+RVEWTK ER RR GG S ++ STNT+PSKTLF+INFDP HTRTRDLERHF+
Sbjct: 61 GRKGRRIRVEWTKAERDNRRSGGDS--KKSSTNTKPSKTLFIINFDPVHTRTRDLERHFD 118
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSP 233
PYGKI ++RIRRNFAF+Q+E QE+AT+AL+ATN+SK DRVI+VEYA+RDDD +R+G+SP
Sbjct: 119 PYGKISNLRIRRNFAFIQFETQEEATKALEATNLSKFMDRVITVEYAIRDDDVKRDGYSP 178
Query: 234 DRNRDRSPD-----------RGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRV 282
DR SPD GR RSPSPYRR RGSPDYGRGS+ + GSP Y R
Sbjct: 179 DRRGRGSPDGRYGRGSPDGRYGRGRSPSPYRRGRGSPDYGRGSNPASRPEPGGSPKYERA 238
Query: 283 RSPSPYRRDRGSP 295
SP+ R D SP
Sbjct: 239 ESPANGRYDSRSP 251
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 51/83 (61%), Gaps = 7/83 (8%)
Query: 340 SPYRKGKPSPNNGRGPSRSPYERERPSPENGRGGSRSPYRRERPSPDNGRVPSPNSMPEP 399
SP R+G+ SP+ GR Y R P GRG S SPYRR R SPD GR +P S PEP
Sbjct: 177 SPDRRGRGSPD-GR------YGRGSPDGRYGRGRSPSPYRRGRGSPDYGRGSNPASRPEP 229
Query: 400 RDSPGYDGADSPINERYRSRSPP 422
SP Y+ A+SP N RY SRSPP
Sbjct: 230 GGSPKYERAESPANGRYDSRSPP 252
>gi|224130148|ref|XP_002320764.1| predicted protein [Populus trichocarpa]
gi|222861537|gb|EEE99079.1| predicted protein [Populus trichocarpa]
Length = 262
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 168/235 (71%), Positives = 192/235 (81%), Gaps = 7/235 (2%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M+ IFCGN +YDARQSDLERLFRRYG++DRVDMKSGFAF+YM+DERDAEDAIR LDR EF
Sbjct: 1 MKAIFCGNLDYDARQSDLERLFRRYGRIDRVDMKSGFAFVYMEDERDAEDAIRRLDRAEF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
GRKGRRLRVEWTK ER RRP G +RR STNT PSKTLFVINFDP HTRTRDLERHF+
Sbjct: 61 GRKGRRLRVEWTKQERESRRPAG---SRRSSTNTTPSKTLFVINFDPVHTRTRDLERHFD 117
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSP 233
P+GKI+S RIRRNFAFVQYE+QEDAT+AL+AT+MSK DRVISVEYA R DD+RRNG+SP
Sbjct: 118 PHGKILSTRIRRNFAFVQYELQEDATKALEATDMSKFMDRVISVEYAAR-DDERRNGYSP 176
Query: 234 D---RNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSP 285
+ R+R + R RSPSP RR+RGSPDYG S + RG+ +Y + SP
Sbjct: 177 ERRDRDRSPDRNYNRERSPSPDRRDRGSPDYGHRSKTNSRPEPRGNHNYDKAESP 231
Score = 45.1 bits (105), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 28/42 (66%)
Query: 376 SPYRRERPSPDNGRVPSPNSMPEPRDSPGYDGADSPINERYR 417
SP RR+R SPD G NS PEPR + YD A+SP NERYR
Sbjct: 196 SPDRRDRGSPDYGHRSKTNSRPEPRGNHNYDKAESPENERYR 237
>gi|356520473|ref|XP_003528886.1| PREDICTED: arginine/serine-rich-splicing factor RSP41-like [Glycine
max]
Length = 253
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 180/262 (68%), Positives = 206/262 (78%), Gaps = 15/262 (5%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M+P+FCGN ++DARQSD+ERLFRRYGKVDRVDMKSGFAF+YM+DERDAE AIR LDRTEF
Sbjct: 1 MKPVFCGNLDFDARQSDVERLFRRYGKVDRVDMKSGFAFVYMEDERDAEYAIRRLDRTEF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
GRKGRR+RVEWTK ER RR GG S R+ S+N+RPSKTLFVINFDP H RTRDLERHF+
Sbjct: 61 GRKGRRIRVEWTKQERDSRRSGGDS--RKSSSNSRPSKTLFVINFDPVHARTRDLERHFD 118
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV--RDDDDRRNGH 231
YGKI+++RIRRNFAF+Q+E QEDATRAL+ATN+SK DRVI+VEYA+ DD DRRNG+
Sbjct: 119 SYGKILNIRIRRNFAFIQFESQEDATRALEATNLSKFMDRVITVEYAIRDDDDRDRRNGY 178
Query: 232 SPDRNRDRSPD--RGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSPYR 289
SPDR SPD GR RSPSPYRR RGSPDYG GS+ S RGSP Y R SP
Sbjct: 179 SPDRRGHDSPDGRYGRGRSPSPYRRGRGSPDYGHGSNPSSRPDPRGSPKYERAESPI--- 235
Query: 290 RDRGSPDYGRNSSRSPYKKERA 311
+ GR SRSP +ER+
Sbjct: 236 ------NNGRYDSRSPPPRERS 251
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 351 NGRGPSRSPYERERPSPENGRGGSRSPYRRERPSPDNGRVPSPNSMPEPRDSPGYDGADS 410
NG P R ++ P GRG S SPYRR R SPD G +P+S P+PR SP Y+ A+S
Sbjct: 176 NGYSPDRRGHDS--PDGRYGRGRSPSPYRRGRGSPDYGHGSNPSSRPDPRGSPKYERAES 233
Query: 411 PINE-RYRSRSPP 422
PIN RY SRSPP
Sbjct: 234 PINNGRYDSRSPP 246
Score = 45.4 bits (106), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 36/59 (61%), Gaps = 9/59 (15%)
Query: 315 HGRGPSRSPYRRDRGSPENGHGSSPS---------PYRKGKPSPNNGRGPSRSPYERER 364
+GRG S SPYRR RGSP+ GHGS+PS Y + + NNGR SRSP RER
Sbjct: 192 YGRGRSPSPYRRGRGSPDYGHGSNPSSRPDPRGSPKYERAESPINNGRYDSRSPPPRER 250
>gi|115443899|ref|NP_001045729.1| Os02g0122800 [Oryza sativa Japonica Group]
gi|41053015|dbj|BAD07946.1| putative arginine/serine-rich splicing factor RSp41 [Oryza sativa
Japonica Group]
gi|113535260|dbj|BAF07643.1| Os02g0122800 [Oryza sativa Japonica Group]
gi|215768223|dbj|BAH00452.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 279
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 179/255 (70%), Positives = 206/255 (80%), Gaps = 24/255 (9%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MRP+FCGN +YDARQS++ERLF +YG+V+RVDMKSGFAF+YM+DERDA++AI LDR EF
Sbjct: 1 MRPVFCGNLDYDARQSEIERLFSKYGRVERVDMKSGFAFVYMEDERDADEAIHRLDRIEF 60
Query: 114 GRKGRRLRVEWTKHER-GIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHF 172
GRKGRRLRVEWTK +R G RR G+S R P+ NTRP+KTLFVINFDP +TRTRDLERHF
Sbjct: 61 GRKGRRLRVEWTKEDRSGGRR---GNSKRSPN-NTRPTKTLFVINFDPINTRTRDLERHF 116
Query: 173 EPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHS 232
+ YGKI +VRIRRNFAFVQYE+QEDAT+AL+ TN S L DRVISVEYA+RDDD++RNG+S
Sbjct: 117 DQYGKISNVRIRRNFAFVQYELQEDATKALEGTNGSTLMDRVISVEYALRDDDEKRNGYS 176
Query: 233 PD-RNRDRSPDRG--RRRSPSPY--RRERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSP 287
P+ R RDRSPDR R RS SPY RERGSPDYGRG RERGSPDYGR
Sbjct: 177 PERRGRDRSPDRRDYRGRSASPYGRGRERGSPDYGRG-------RERGSPDYGRG----- 224
Query: 288 YRRDRGSPDYGRNSS 302
DRGSPDY R +S
Sbjct: 225 --GDRGSPDYHRGAS 237
>gi|222622077|gb|EEE56209.1| hypothetical protein OsJ_05182 [Oryza sativa Japonica Group]
Length = 290
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 179/255 (70%), Positives = 206/255 (80%), Gaps = 24/255 (9%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MRP+FCGN +YDARQS++ERLF +YG+V+RVDMKSGFAF+YM+DERDA++AI LDR EF
Sbjct: 12 MRPVFCGNLDYDARQSEIERLFSKYGRVERVDMKSGFAFVYMEDERDADEAIHRLDRIEF 71
Query: 114 GRKGRRLRVEWTKHER-GIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHF 172
GRKGRRLRVEWTK +R G RR G+S R P+ NTRP+KTLFVINFDP +TRTRDLERHF
Sbjct: 72 GRKGRRLRVEWTKEDRSGGRR---GNSKRSPN-NTRPTKTLFVINFDPINTRTRDLERHF 127
Query: 173 EPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHS 232
+ YGKI +VRIRRNFAFVQYE+QEDAT+AL+ TN S L DRVISVEYA+RDDD++RNG+S
Sbjct: 128 DQYGKISNVRIRRNFAFVQYELQEDATKALEGTNGSTLMDRVISVEYALRDDDEKRNGYS 187
Query: 233 PD-RNRDRSPDRG--RRRSPSPY--RRERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSP 287
P+ R RDRSPDR R RS SPY RERGSPDYGRG RERGSPDYGR
Sbjct: 188 PERRGRDRSPDRRDYRGRSASPYGRGRERGSPDYGRG-------RERGSPDYGRG----- 235
Query: 288 YRRDRGSPDYGRNSS 302
DRGSPDY R +S
Sbjct: 236 --GDRGSPDYHRGAS 248
>gi|357145457|ref|XP_003573649.1| PREDICTED: arginine/serine-rich-splicing factor RSP40-like
[Brachypodium distachyon]
Length = 277
Score = 317 bits (813), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 187/293 (63%), Positives = 219/293 (74%), Gaps = 35/293 (11%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MRPIFCGN +YDARQS++ERLF +YG+V+RVD+K+GFAF+YM+DERDAEDAI LDRT+F
Sbjct: 1 MRPIFCGNLDYDARQSEIERLFSKYGRVERVDIKTGFAFVYMEDERDAEDAIHRLDRTDF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
GRKGRRLRVEWTK +R R G + +R T+ +P+KTLFVINFDP TRTRDLE+HF+
Sbjct: 61 GRKGRRLRVEWTKEDRSGGRKG---NPKRSPTSVKPTKTLFVINFDPISTRTRDLEKHFD 117
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSP 233
YGKI ++RIRRNFAFVQYE QEDAT+ALD TN S L DRVISVEYA+RDDD++RNG+SP
Sbjct: 118 QYGKIANIRIRRNFAFVQYESQEDATKALDGTNGSTLMDRVISVEYALRDDDEKRNGYSP 177
Query: 234 DR--NRDRSPDR--GRRRSPSPY--RRERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSP 287
+R RDRSPDR R RS SPY RERGSPDYGRG RERGSPDYG+ +
Sbjct: 178 ERRGGRDRSPDRRDNRGRSGSPYGRGRERGSPDYGRG-------RERGSPDYGKGGA--- 227
Query: 288 YRRDRGSPDYGRNSS---------RSP-YKKER--AAIGHGRGPSRSPYRRDR 328
RGSPDY R S RSP Y +ER A+ G+ R SRSP R DR
Sbjct: 228 ----RGSPDYVRGGSPYAGKGDERRSPKYDRERREASPGYDRPRSRSPAREDR 276
>gi|356505098|ref|XP_003521329.1| PREDICTED: arginine/serine-rich-splicing factor RSP41-like [Glycine
max]
Length = 252
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 175/246 (71%), Positives = 199/246 (80%), Gaps = 6/246 (2%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M+P+FCGN ++DARQSD+ERLFRRYGKVDRVDMKSGFAF+YM+DERDAE AIR LDRTEF
Sbjct: 1 MKPVFCGNLDFDARQSDVERLFRRYGKVDRVDMKSGFAFVYMEDERDAEYAIRRLDRTEF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
GRKGRR+RVEWTK ER RR GG S R+ S+N+RPSKTLFVINFDP + RTRDLERHF+
Sbjct: 61 GRKGRRIRVEWTKQERDSRRSGGDS--RKSSSNSRPSKTLFVINFDPVNARTRDLERHFD 118
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV--RDDDDRRNGH 231
YGKI+++RIRRNFAF+Q+E QEDATRAL+ATN+SK DRVI+VEYA+ DD DRRNG+
Sbjct: 119 SYGKILNIRIRRNFAFIQFESQEDATRALEATNLSKFMDRVITVEYAIRDDDDRDRRNGY 178
Query: 232 SPDRNRDRSPD--RGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSPYR 289
SPDR SPD GR RSPSPYRR RGSPDYG GS+ S RGSP Y R SP R
Sbjct: 179 SPDRRGHDSPDGRYGRGRSPSPYRRGRGSPDYGHGSNPSSRPEPRGSPKYDRAESPINGR 238
Query: 290 RDRGSP 295
D SP
Sbjct: 239 YDSRSP 244
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Query: 358 SPYERERPSPEN--GRGGSRSPYRRERPSPDNGRVPSPNSMPEPRDSPGYDGADSPINER 415
SP R SP+ GRG S SPYRR R SPD G +P+S PEPR SP YD A+SPIN R
Sbjct: 179 SPDRRGHDSPDGRYGRGRSPSPYRRGRGSPDYGHGSNPSSRPEPRGSPKYDRAESPINGR 238
Query: 416 YRSRSPPAED 425
Y SRSPP D
Sbjct: 239 YDSRSPPPRD 248
>gi|388494018|gb|AFK35075.1| unknown [Lotus japonicus]
Length = 249
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 172/244 (70%), Positives = 199/244 (81%), Gaps = 5/244 (2%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M+P+FCGN ++DARQSD+ERLFRRYGKV+RVDMKSGFAF+YM+DERDAE AIR LDRTEF
Sbjct: 1 MKPVFCGNLDFDARQSDVERLFRRYGKVERVDMKSGFAFVYMEDERDAEYAIRRLDRTEF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
GRKGRR+RVEWTK ER RR + +R+P++N +PSKTLF+INFDP HTRTRDLERHF+
Sbjct: 61 GRKGRRIRVEWTKQERDSRR---SADSRKPASNMKPSKTLFIINFDPVHTRTRDLERHFD 117
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSP 233
PYGKI ++RIRRNFAF+QYE EDATRAL+ATN+SK DRVI+VEYA+RDDDDRR+G SP
Sbjct: 118 PYGKISNIRIRRNFAFIQYESLEDATRALEATNLSKFMDRVITVEYAIRDDDDRRDGQSP 177
Query: 234 DRNRDRSPD--RGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSPYRRD 291
DR SPD GR RSPSPYRR RGSPDYG GS+ + RGSP Y R SP R D
Sbjct: 178 DRRGRVSPDGRYGRGRSPSPYRRGRGSPDYGHGSNPASRPEPRGSPKYERAESPQNGRYD 237
Query: 292 RGSP 295
SP
Sbjct: 238 SRSP 241
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 357 RSPYERERPSPEN--GRGGSRSPYRRERPSPDNGRVPSPNSMPEPRDSPGYDGADSPINE 414
+SP R R SP+ GRG S SPYRR R SPD G +P S PEPR SP Y+ A+SP N
Sbjct: 175 QSPDRRGRVSPDGRYGRGRSPSPYRRGRGSPDYGHGSNPASRPEPRGSPKYERAESPQNG 234
Query: 415 RYRSRSPPAED 425
RY SRSPP D
Sbjct: 235 RYDSRSPPPRD 245
Score = 41.2 bits (95), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 41/72 (56%), Gaps = 10/72 (13%)
Query: 321 RSPYRRDRGSPEN--GHGSSPSPYRKGKPSPNNGRG--------PSRSPYERERPSPENG 370
+SP RR R SP+ G G SPSPYR+G+ SP+ G G P SP SP+NG
Sbjct: 175 QSPDRRGRVSPDGRYGRGRSPSPYRRGRGSPDYGHGSNPASRPEPRGSPKYERAESPQNG 234
Query: 371 RGGSRSPYRRER 382
R SRSP R+R
Sbjct: 235 RYDSRSPPPRDR 246
>gi|449529618|ref|XP_004171795.1| PREDICTED: arginine/serine-rich-splicing factor RSP40-like, partial
[Cucumis sativus]
Length = 282
Score = 307 bits (787), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 196/300 (65%), Positives = 223/300 (74%), Gaps = 27/300 (9%)
Query: 135 GGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEV 194
GGGS RR STNTRPSKTLFVINFDPYHTRTRDLERHF+PYGKI+SVRIRRNFAFVQYE+
Sbjct: 1 GGGS--RRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKILSVRIRRNFAFVQYEL 58
Query: 195 QEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSPDRNRDRSPDRGRRRSPSPYRR 254
QEDATRAL+ TNMSKL DRVISVEYAVRDDDD+RNG+SPDRNRDRSPDR +RRS SPYRR
Sbjct: 59 QEDATRALELTNMSKLMDRVISVEYAVRDDDDKRNGYSPDRNRDRSPDR-KRRSSSPYRR 117
Query: 255 ERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSPYR--RDRGSPDYGRNSS--RSPYKKER 310
ERGSPDYG G SRSPYRR+R SPDYG RSPSPY+ R+RGSPDYGR S SPY++ER
Sbjct: 118 ERGSPDYGNGISRSPYRRQRASPDYGSRRSPSPYQRERERGSPDYGRGRSPNHSPYRRER 177
Query: 311 A-AIGHGRGPSRSP-YRRDRGSPENGHGSSPSPYRKG--KPSPNNGRGPSRSPYERERPS 366
+ H R PS P ++R+R + + SPSPY +G K SP +GRG S SP +RER S
Sbjct: 178 ERSSDHVRTPSHRPSHQRERPNDDRVPNRSPSPYGRGREKGSP-DGRGTSYSPRDRERSS 236
Query: 367 -PENGRGGSRSPYRRERPSPDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRSPPAED 425
P+NG D+G ++PEP +SP Y G SP Y SRSP AE+
Sbjct: 237 NPDNGH--------------DHGHDQQQTTIPEPGESPNYGGTQSPKRRGYGSRSPQAEE 282
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 57 IFCGNFE-YDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGR 115
+F NF+ Y R DLER F YGK+ V ++ FAF+ + + EDA R L+ T +
Sbjct: 17 LFVINFDPYHTRTRDLERHFDPYGKILSVRIRRNFAFVQYELQ---EDATRALELTNMSK 73
Query: 116 -KGRRLRVEWT 125
R + VE+
Sbjct: 74 LMDRVISVEYA 84
>gi|145334133|ref|NP_001078447.1| arginine/serine-rich-splicing factor RSP40 [Arabidopsis thaliana]
gi|222423494|dbj|BAH19717.1| AT4G25500 [Arabidopsis thaliana]
gi|332659669|gb|AEE85069.1| arginine/serine-rich-splicing factor RSP40 [Arabidopsis thaliana]
Length = 317
Score = 304 bits (779), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 207/347 (59%), Positives = 246/347 (70%), Gaps = 42/347 (12%)
Query: 89 GFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTR 148
GFAF+YM+DERDAEDAIR LDR EFGRKGRRLRVEWTK ERG + GG S R S++ R
Sbjct: 3 GFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVEWTKSERGGDKRSGGGSRRS-SSSMR 61
Query: 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMS 208
PSKTLFVINFD +TRTRDLE+HFEPYGKI++VRIRRNFAF+QYE QEDATRALDA+N S
Sbjct: 62 PSKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNS 121
Query: 209 KLTDRVISVEYAVRDDDDRRNGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSS-R 267
KL D+VISVEYAV+DDD R NGHSP+R RDRS RRRSPSPY+RERGSPDYGRG+S
Sbjct: 122 KLMDKVISVEYAVKDDDARGNGHSPERRRDRS-PERRRRSPSPYKRERGSPDYGRGASPV 180
Query: 268 SPYRRERGSPDYGRVRSPSPYRRD-RGSPDYGRN--SSRSPYKKERAAIGHGRGPSRSPY 324
+ YR+ER SPDYGR RSPSPY++ RGSP+YGR+ + SP ++ER A
Sbjct: 181 AAYRKERTSPDYGRRRSPSPYKKSRRGSPEYGRDRRGNDSPRRRERVA------------ 228
Query: 325 RRDRGSPENGHGSSPSPYRKGKPSPNNGR---GPSRSPYERERPSPENGRGGSRSPY--- 378
SP+ Y + SPNN R P+ SP+++E SP NG G SP
Sbjct: 229 -------------SPTKYSR---SPNNKRERMSPNHSPFKKE--SPRNGVGEVESPIERR 270
Query: 379 RRERPSPDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRSPPAED 425
R R SP+NG+V SP S+ GYDGA+SP+ + RSPPA++
Sbjct: 271 ERSRSSPENGQVESPGSIGRRDSDGGYDGAESPMQKSRSPRSPPADE 317
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 54 MRP---IFCGNFEYD-ARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLD 109
MRP +F NF+ D R DLE+ F YGK+ V ++ FAFI + + EDA R LD
Sbjct: 60 MRPSKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQ---EDATRALD 116
>gi|226494041|ref|NP_001147698.1| arginine/serine-rich splicing factor RSP41 [Zea mays]
gi|195613160|gb|ACG28410.1| arginine/serine-rich splicing factor RSP41 [Zea mays]
gi|195655913|gb|ACG47424.1| arginine/serine-rich splicing factor RSP41 [Zea mays]
Length = 279
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 178/292 (60%), Positives = 216/292 (73%), Gaps = 31/292 (10%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MRP+FCGN +YD R S++ERLF +YG+V+RVD+K+GFAF+YM+DERDAEDAI LD +F
Sbjct: 1 MRPVFCGNLDYDVRISEVERLFGKYGRVERVDLKTGFAFVYMEDERDAEDAISRLDGIDF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
GRKGRR+RVEWTK +R + R SS+RR TNT+P+KTLFVINFDP +TR RDLERHF+
Sbjct: 61 GRKGRRIRVEWTKEDRTVGRK---SSSRRSPTNTKPTKTLFVINFDPINTRIRDLERHFD 117
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDD---DRRNG 230
YG++ +VRI++NFAF+Q+EVQEDATRAL+ TN S DRVISVEYA+RDDD +R NG
Sbjct: 118 KYGRVANVRIKKNFAFIQFEVQEDATRALEGTNGSHFMDRVISVEYALRDDDEKGERGNG 177
Query: 231 HSPD-RNRDRSPDRGRRRSPSPY--RRERGSPDYGRGSSRSPYRRERGSPDYGR-VRSP- 285
+SPD R R+RSP GRRRSPSPY RERGSPDYGR +ERGSPDYGR RSP
Sbjct: 178 YSPDRRGRERSP--GRRRSPSPYGRGRERGSPDYGRS-------KERGSPDYGRGGRSPD 228
Query: 286 -----SPYRRDRGSPDYGRNSSRSP----YKKERAAIGHGRGPSRSPYRRDR 328
SP RG D+ R RSP ++E + G+ R PSRSP R R
Sbjct: 229 NGRGVSPAGGGRG--DHARGGGRSPDYDRQRREASPPGYDRSPSRSPGREAR 278
>gi|222424234|dbj|BAH20075.1| AT4G25500 [Arabidopsis thaliana]
Length = 317
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 206/347 (59%), Positives = 246/347 (70%), Gaps = 42/347 (12%)
Query: 89 GFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTR 148
GFAF+YM+DERDAEDAIR LDR EFGRKGRRLRVEWTK ERG + GG S R S++ R
Sbjct: 3 GFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVEWTKSERGGDKRSGGGSRRS-SSSMR 61
Query: 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMS 208
PSKTLFVINFD +TRTRDLE+HFEPYGKI++VRIRRNFAF+QY+ QEDATRALDA+N S
Sbjct: 62 PSKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYKAQEDATRALDASNNS 121
Query: 209 KLTDRVISVEYAVRDDDDRRNGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSS-R 267
KL D+VISVEYAV+DDD R NGHSP+R RDRS RRRSPSPY+RERGSPDYGRG+S
Sbjct: 122 KLMDKVISVEYAVKDDDARGNGHSPERRRDRS-PERRRRSPSPYKRERGSPDYGRGASPV 180
Query: 268 SPYRRERGSPDYGRVRSPSPYRRD-RGSPDYGRN--SSRSPYKKERAAIGHGRGPSRSPY 324
+ YR+ER SPDYGR RSPSPY++ RGSP+YGR+ + SP ++ER A
Sbjct: 181 AAYRKERTSPDYGRRRSPSPYKKSRRGSPEYGRDRRGNDSPRRRERVA------------ 228
Query: 325 RRDRGSPENGHGSSPSPYRKGKPSPNNGR---GPSRSPYERERPSPENGRGGSRSPY--- 378
SP+ Y + SPNN R P+ SP+++E SP NG G SP
Sbjct: 229 -------------SPTKYSR---SPNNKRERMSPNHSPFKKE--SPRNGVGEVESPIERR 270
Query: 379 RRERPSPDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRSPPAED 425
R R SP+NG+V SP S+ GYDGA+SP+ + RSPPA++
Sbjct: 271 ERSRSSPENGQVESPGSIGRRDSDGGYDGAESPMQKSRSPRSPPADE 317
Score = 41.6 bits (96), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 54 MRP---IFCGNFEYD-ARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLD 109
MRP +F NF+ D R DLE+ F YGK+ V ++ FAFI + EDA R LD
Sbjct: 60 MRPSKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQY---KAQEDATRALD 116
>gi|194696906|gb|ACF82537.1| unknown [Zea mays]
gi|413935351|gb|AFW69902.1| arginine/serine-rich splicing factor RSP41 [Zea mays]
Length = 279
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 177/292 (60%), Positives = 216/292 (73%), Gaps = 31/292 (10%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MRP+FCGN +YD R S++ERLF +YG+V+RVD+K+GFAF+YM+DERDAEDAI LD +F
Sbjct: 1 MRPVFCGNLDYDVRISEVERLFGKYGRVERVDLKTGFAFVYMEDERDAEDAISRLDGIDF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
GRKGRR+RVEWTK +R + R SS+RR TNT+P+KTLFVINFDP +TR RDLERHF+
Sbjct: 61 GRKGRRIRVEWTKEDRTVGRK---SSSRRSPTNTKPTKTLFVINFDPINTRIRDLERHFD 117
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDD---DRRNG 230
YG++ +VRI++NFAF+Q+E+QEDATRAL+ TN S DRVISVEYA+RDDD +R NG
Sbjct: 118 KYGRVANVRIKKNFAFIQFEIQEDATRALEGTNGSHFMDRVISVEYALRDDDEKGERGNG 177
Query: 231 HSPD-RNRDRSPDRGRRRSPSPY--RRERGSPDYGRGSSRSPYRRERGSPDYGR-VRSP- 285
+SPD R R+RSP GRRRSPSPY RERGSPDYGR +ERGSPDYGR RSP
Sbjct: 178 YSPDRRGRERSP--GRRRSPSPYGRGRERGSPDYGRS-------KERGSPDYGRGGRSPD 228
Query: 286 -----SPYRRDRGSPDYGRNSSRSP----YKKERAAIGHGRGPSRSPYRRDR 328
SP RG D+ R RSP ++E + G+ R PSRSP R R
Sbjct: 229 NGRGVSPAGGGRG--DHARGGGRSPDYDRQRREASPPGYDRSPSRSPGREAR 278
>gi|148909122|gb|ABR17662.1| unknown [Picea sitchensis]
Length = 337
Score = 295 bits (754), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 187/351 (53%), Positives = 235/351 (66%), Gaps = 40/351 (11%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M+P++CGN EY+ RQS++ERLF +YGKVDRVDMKSGFAFIYM+DE+DAEDAIRGLD TEF
Sbjct: 1 MKPLYCGNVEYETRQSEIERLFGKYGKVDRVDMKSGFAFIYMEDEQDAEDAIRGLDSTEF 60
Query: 114 GRKGRRLRVEWTKH-ERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHF 172
G + RRL VEWTK+ +RG+RR G RR T+ +P+KTLFVINFD Y+T+ D+ERHF
Sbjct: 61 GTQRRRLSVEWTKNADRGVRRSEDG---RRSVTDLKPTKTLFVINFDSYNTKVEDIERHF 117
Query: 173 EPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA------------ 220
EPYGK+++VRIRRNFAFVQYE+QEDAT+AL++T++SK+ D+V++V+YA
Sbjct: 118 EPYGKLLNVRIRRNFAFVQYELQEDATKALESTHLSKMLDKVLTVKYAQREDGDRRGRRS 177
Query: 221 --VRDDDDRRNGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRR-ERGSP 277
+R R G DR+R SP GRR RGSPDYGR SS RR ER SP
Sbjct: 178 SPIRRGRYSRAGEDHDRDRSASPLHGRRAV-------RGSPDYGRASSPIHGRRPERRSP 230
Query: 278 DYGRVRSPSPYRR-DRGSPDYGRNSSRSPYKK-ERAAIGHGRGPSRSPYRR-DRGSPENG 334
DYGR SP RR +R SPDYGR S K+ ER + +GR PS +R +R SP+ G
Sbjct: 231 DYGRAPSPIYARRPERRSPDYGRAPSPIYAKRPERRSPDYGRAPSPIYAKRPERRSPDYG 290
Query: 335 HGSSPS-PYRKGKPSPNNGRGPSRSPYERERPSPENGRGGSRSPYRRERPS 384
+SP R+ K SP+ GR SP + + SRSP R+ RPS
Sbjct: 291 RAASPVYASRRQKNSPDYGRV----------ASPVHEQDRSRSPMRQSRPS 331
>gi|300681335|emb|CAZ96065.1| arginine/serine-rich splicing factor [Saccharum hybrid cultivar
R570]
Length = 324
Score = 295 bits (754), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 182/311 (58%), Positives = 218/311 (70%), Gaps = 48/311 (15%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGL 108
MRPIFCGN +YD R S++ERLF +YG+V+RVD+K+ GFAF+YM+DERDAEDAI L
Sbjct: 25 MRPIFCGNLDYDVRISEVERLFGKYGRVERVDLKTVERSGGFAFVYMEDERDAEDAIHRL 84
Query: 109 DRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDL 168
D +FGRKGRR+RVEWTK +R + R G S+RR TN RP+KTLFVINFDP +TR RDL
Sbjct: 85 DGIDFGRKGRRIRVEWTKEDRTVGRRG---SSRRSPTNARPTKTLFVINFDPINTRIRDL 141
Query: 169 ERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDD--- 225
ERHF+ YG++ +VRI++NFAFVQ+EVQEDATRAL+ TN S DRVISVEYA+RDDD
Sbjct: 142 ERHFDKYGRVANVRIKKNFAFVQFEVQEDATRALEGTNGSHFMDRVISVEYALRDDDEKG 201
Query: 226 DRRNGHSPD-RNRDRSPDRGRRRSPSPY--RRERGSPDYGRGSSRSPYRRERGSPDYGR- 281
+R NG+SPD R R+RSP GRRRSPSPY RERGSPDYGR +ERGSPDYGR
Sbjct: 202 ERGNGYSPDRRGRERSP--GRRRSPSPYGRGRERGSPDYGRS-------KERGSPDYGRG 252
Query: 282 VRSP---------------SPYRRDRG-------SPDYGRNSSRSPYKKER--AAIGHGR 317
RSP SP RG SPDY R + ++ER A+ G+ R
Sbjct: 253 GRSPDNGRGGRSPDNGRGVSPINGSRGDHDRGGRSPDYDREHREASPRRERREASPGYDR 312
Query: 318 GPSRSPYRRDR 328
PSRSP R +R
Sbjct: 313 SPSRSPGRDER 323
>gi|300681351|emb|CAZ96098.1| arginine/serine-rich splicing factor [Saccharum hybrid cultivar
R570]
Length = 315
Score = 295 bits (754), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 179/302 (59%), Positives = 216/302 (71%), Gaps = 39/302 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGL 108
MRP+FCGN +YD R S++ERLF +YG+V+RVD+K+ GFAF+YM+DERDAEDAI L
Sbjct: 25 MRPVFCGNLDYDVRISEVERLFGKYGRVERVDLKTVERSGGFAFVYMEDERDAEDAIHRL 84
Query: 109 DRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDL 168
D +FGRKGRR+RVEWTK +R + R G S+RR TN RP+KTLFVINFDP +TR RDL
Sbjct: 85 DGIDFGRKGRRIRVEWTKEDRTVGRRG---SSRRSPTNARPTKTLFVINFDPINTRIRDL 141
Query: 169 ERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDD--- 225
ERHF+ YG++ +VRI++NFAFVQ+EVQEDATRAL+ TN S DRVISVEYA+RDDD
Sbjct: 142 ERHFDKYGRVANVRIKKNFAFVQFEVQEDATRALEGTNGSHFMDRVISVEYALRDDDEKG 201
Query: 226 DRRNGHSPD-RNRDRSPDRGRRRSPSPY--RRERGSPDYGRGSSRSPYRRERGSPDYGR- 281
+R NG+SPD R R+RSP GRRRSPSPY RERGSPDYGR +ERGSPDYGR
Sbjct: 202 ERGNGYSPDRRGRERSP--GRRRSPSPYGRGRERGSPDYGRS-------KERGSPDYGRG 252
Query: 282 VRSPSPYR-------------RDRGSPDYGRNSSRSPYKKER--AAIGHGRGPSRSPYRR 326
RSP R R SPDY R + ++ER A+ G+ R PSRSP R
Sbjct: 253 GRSPDNGRGVSPINGGRGDHGRGGRSPDYDREHREASPRRERREASPGYDRSPSRSPGRD 312
Query: 327 DR 328
+R
Sbjct: 313 ER 314
>gi|242063870|ref|XP_002453224.1| hypothetical protein SORBIDRAFT_04g001910 [Sorghum bicolor]
gi|241933055|gb|EES06200.1| hypothetical protein SORBIDRAFT_04g001910 [Sorghum bicolor]
gi|448878270|gb|AGE46098.1| arginine/serine-rich splicing factor RS34 [Sorghum bicolor]
Length = 295
Score = 293 bits (751), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 179/306 (58%), Positives = 215/306 (70%), Gaps = 43/306 (14%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MRP+FCGN +YD R S++ERLF +YG+V+RVD+K+GFAF+YM+DERDAEDAI LD +F
Sbjct: 1 MRPVFCGNLDYDVRISEVERLFGKYGRVERVDLKTGFAFVYMEDERDAEDAIHRLDGIDF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
GRKGRR+RVEWTK +R R G S+RR T RP+KTLFVINFDP +TR RDLERHF+
Sbjct: 61 GRKGRRIRVEWTKEDRTAGRRG---SSRRSPTQARPTKTLFVINFDPINTRIRDLERHFD 117
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDD---DRRNG 230
YG++ +VRI++NFAFVQ+EVQEDATRAL+ TN S DRVISVEYA+RDDD +R NG
Sbjct: 118 KYGRVANVRIKKNFAFVQFEVQEDATRALEGTNGSHFMDRVISVEYALRDDDEKGERGNG 177
Query: 231 HSPD-RNRDRSPDRGRRRSPSPY--RRERGSPDYGRGSSRSPYRRERGSPDYGR-VRSPS 286
+SPD R R+RSP GRRRSPSPY RERGSPDYGR +ERGSPDYGR RSP
Sbjct: 178 YSPDRRGRERSP--GRRRSPSPYGRGRERGSPDYGRS-------KERGSPDYGRGGRSPD 228
Query: 287 PYR------RDRG----------------SPDYGRNSSRSPYKKER--AAIGHGRGPSRS 322
R RG SPDY R + ++ER A+ G+ R PSRS
Sbjct: 229 NGRGGHSPENGRGVSPANGGRGDHGRGGRSPDYDRERREASPRRERREASPGYDRSPSRS 288
Query: 323 PYRRDR 328
P R +R
Sbjct: 289 PGRDER 294
>gi|116786163|gb|ABK24003.1| unknown [Picea sitchensis]
Length = 289
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 162/259 (62%), Positives = 193/259 (74%), Gaps = 13/259 (5%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M+P++CGN EY+ RQS++ERLF +YG+V+RVDMKSG+AF+YM+DERDAEDAIR LD+TEF
Sbjct: 1 MKPLYCGNIEYEVRQSEIERLFGKYGRVERVDMKSGYAFVYMEDERDAEDAIRALDKTEF 60
Query: 114 GRKGRRLRVEWTKH-ERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHF 172
GR+ RRL VEWTKH ERG+RR G RR T +P+KTLFVINFDPY TR RDLERHF
Sbjct: 61 GRQRRRLTVEWTKHAERGLRRSEDG---RRSVTGLKPTKTLFVINFDPYDTRARDLERHF 117
Query: 173 EPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHS 232
EPYGK+++VRIRRNFAF+ Y QE+AT+A DAT+MS L DRVI+VEYA R+D +RR G S
Sbjct: 118 EPYGKVLNVRIRRNFAFIHYGTQEEATKAFDATHMSTLLDRVITVEYAQREDGNRRGGPS 177
Query: 233 P----DRNRDRSPDRGRRRSPSPY---RRERGSPDYGRGSSRSPYRR-ERGSPDYGRVRS 284
R S D GR RS SP R RGSPDYGR S + RR ER SPDYGR S
Sbjct: 178 SPIRGGRYGRSSEDHGRDRSASPIYGRRAMRGSPDYGRAPSPTYARRPERCSPDYGRATS 237
Query: 285 PSPYRR-DRGSPDYGRNSS 302
P RR ++ DYGR +S
Sbjct: 238 PIYSRRPEKHGSDYGRAAS 256
>gi|42573039|ref|NP_974616.1| arginine/serine-rich-splicing factor RSP40 [Arabidopsis thaliana]
gi|332659668|gb|AEE85068.1| arginine/serine-rich-splicing factor RSP40 [Arabidopsis thaliana]
Length = 309
Score = 290 bits (743), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 202/341 (59%), Positives = 240/341 (70%), Gaps = 42/341 (12%)
Query: 95 MDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLF 154
M+DERDAEDAIR LDR EFGRKGRRLRVEWTK ERG + GG S R S++ RPSKTLF
Sbjct: 1 MEDERDAEDAIRALDRFEFGRKGRRLRVEWTKSERGGDKRSGGGSRRS-SSSMRPSKTLF 59
Query: 155 VINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRV 214
VINFD +TRTRDLE+HFEPYGKI++VRIRRNFAF+QYE QEDATRALDA+N SKL D+V
Sbjct: 60 VINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKV 119
Query: 215 ISVEYAVRDDDDRRNGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSS-RSPYRRE 273
ISVEYAV+DDD R NGHSP+R RDRS RRRSPSPY+RERGSPDYGRG+S + YR+E
Sbjct: 120 ISVEYAVKDDDARGNGHSPERRRDRS-PERRRRSPSPYKRERGSPDYGRGASPVAAYRKE 178
Query: 274 RGSPDYGRVRSPSPYRRD-RGSPDYGRN--SSRSPYKKERAAIGHGRGPSRSPYRRDRGS 330
R SPDYGR RSPSPY++ RGSP+YGR+ + SP ++ER A
Sbjct: 179 RTSPDYGRRRSPSPYKKSRRGSPEYGRDRRGNDSPRRRERVA------------------ 220
Query: 331 PENGHGSSPSPYRKGKPSPNNGR---GPSRSPYERERPSPENGRGGSRSPY---RRERPS 384
SP+ Y + SPNN R P+ SP+++E SP NG G SP R R S
Sbjct: 221 -------SPTKYSR---SPNNKRERMSPNHSPFKKE--SPRNGVGEVESPIERRERSRSS 268
Query: 385 PDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRSPPAED 425
P+NG+V SP S+ GYDGA+SP+ + RSPPA++
Sbjct: 269 PENGQVESPGSIGRRDSDGGYDGAESPMQKSRSPRSPPADE 309
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 54 MRP---IFCGNFEYD-ARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLD 109
MRP +F NF+ D R DLE+ F YGK+ V ++ FAFI + + EDA R LD
Sbjct: 52 MRPSKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQ---EDATRALD 108
>gi|300681317|emb|CAZ96031.1| arginine/serine-rich splicing factor [Sorghum bicolor]
Length = 324
Score = 287 bits (735), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 179/311 (57%), Positives = 215/311 (69%), Gaps = 48/311 (15%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGL 108
MRP+FCGN +YD R S++ERLF +YG+V+RVD+K+ GFAF+YM+DERDAEDAI L
Sbjct: 25 MRPVFCGNLDYDVRISEVERLFGKYGRVERVDLKTVERSGGFAFVYMEDERDAEDAIHRL 84
Query: 109 DRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDL 168
D +FGRKGRR+RVEWTK +R R G S+RR T RP+KTLFVINFDP +TR RDL
Sbjct: 85 DGIDFGRKGRRIRVEWTKEDRTAGRRG---SSRRSPTQARPTKTLFVINFDPINTRIRDL 141
Query: 169 ERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDD--- 225
ERHF+ YG++ +VRI++NFAFVQ+EVQEDATRAL+ TN S DRVISVEYA+RDDD
Sbjct: 142 ERHFDKYGRVANVRIKKNFAFVQFEVQEDATRALEGTNGSHFMDRVISVEYALRDDDEKG 201
Query: 226 DRRNGHSPD-RNRDRSPDRGRRRSPSPY--RRERGSPDYGRGSSRSPYRRERGSPDYGR- 281
+R NG+SPD R R+RSP GRRRSPSPY RERGSPDYGR +ERGSPDYGR
Sbjct: 202 ERGNGYSPDRRGRERSP--GRRRSPSPYGRGRERGSPDYGRS-------KERGSPDYGRG 252
Query: 282 VRSPSPYR------RDRG----------------SPDYGRNSSRSPYKKER--AAIGHGR 317
RSP R RG SPDY R + ++ER A+ G+ R
Sbjct: 253 GRSPDNGRGGHSPENGRGVSPANGGRGDHGRGGRSPDYDRERREASPRRERREASPGYDR 312
Query: 318 GPSRSPYRRDR 328
PSRSP R +R
Sbjct: 313 SPSRSPGRDER 323
>gi|212722462|ref|NP_001132395.1| hypothetical protein [Zea mays]
gi|194694266|gb|ACF81217.1| unknown [Zea mays]
gi|413926669|gb|AFW66601.1| hypothetical protein ZEAMMB73_609363 [Zea mays]
Length = 287
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 151/235 (64%), Positives = 185/235 (78%), Gaps = 19/235 (8%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MRP+FCGN +YD R S++ERLF +YG+V+RVD+K+GFAFIYM+DERDAEDAI LD +F
Sbjct: 1 MRPVFCGNLDYDVRISEVERLFGKYGRVERVDLKTGFAFIYMEDERDAEDAISRLDGIDF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
GRKGRR++VEWTK +R R G ++RR TN +P+KTLFVINFDP +TR RDLERHF+
Sbjct: 61 GRKGRRIKVEWTKEDRTADRRG---NSRRSPTNAKPTKTLFVINFDPINTRIRDLERHFD 117
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDR----RN 229
YG++ +VRI++NFAF+Q+E QEDATRAL+ N S DRVISVEYA+RDDD++ N
Sbjct: 118 KYGRVANVRIKKNFAFIQFEAQEDATRALEGANGSHFMDRVISVEYALRDDDEKGERATN 177
Query: 230 GHSPD-RNRDRSPDRGRRRSPSPY--RRERGSPDYGRGSSRSPYRRERGSPDYGR 281
G+SPD R R+RSP G RRSPSPY RERGSPDYGRG +ERGSPDYGR
Sbjct: 178 GYSPDRRGRERSP--GARRSPSPYGRGRERGSPDYGRG-------KERGSPDYGR 223
>gi|255646388|gb|ACU23673.1| unknown [Glycine max]
Length = 234
Score = 283 bits (725), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 141/184 (76%), Positives = 163/184 (88%), Gaps = 4/184 (2%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M+P+FCGN ++DARQSD+ERLFRRYGKVDRVDMKSGFAF+YM+DERDAE AIR LDRTEF
Sbjct: 1 MKPVFCGNLDFDARQSDVERLFRRYGKVDRVDMKSGFAFVYMEDERDAEYAIRRLDRTEF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
GRKGRR+RVEWTK ER RR GG S R+ S+N+RPSKTLFVINFDP H RTRDLERHF+
Sbjct: 61 GRKGRRIRVEWTKQERDSRRSGGDS--RKSSSNSRPSKTLFVINFDPVHARTRDLERHFD 118
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV--RDDDDRRNGH 231
YGKI+++RIRRNFAF+Q+E QEDATRAL+ATN+SK DRVI+VEYA+ DD DRRNG+
Sbjct: 119 SYGKILNIRIRRNFAFIQFESQEDATRALEATNLSKFMDRVITVEYAIRDDDDRDRRNGY 178
Query: 232 SPDR 235
SPDR
Sbjct: 179 SPDR 182
>gi|116784190|gb|ABK23251.1| unknown [Picea sitchensis]
Length = 299
Score = 283 bits (725), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 184/373 (49%), Positives = 214/373 (57%), Gaps = 92/373 (24%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M+P++CGN EY RQ ++ERLF RYG+VDRVDMKSG+AFIYM+DERDAEDAIRGLD T+F
Sbjct: 1 MKPLYCGNIEYAVRQIEIERLFGRYGRVDRVDMKSGYAFIYMEDERDAEDAIRGLDNTDF 60
Query: 114 GRKGRRLRVEWTKH-ERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHF 172
GR+ RRL VEWTKH +RG RR G RR P+KTLFVINFDPY T+ RDLERHF
Sbjct: 61 GRQRRRLTVEWTKHADRGFRRFEDG---RRSDAGLNPTKTLFVINFDPYSTKVRDLERHF 117
Query: 173 EPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHS 232
EPYGK+I VRIRRNFAFVQYE QEDAT+AL++T+MSK+ DRVI+VEYA +D DRR G+S
Sbjct: 118 EPYGKLIYVRIRRNFAFVQYESQEDATKALESTHMSKMLDRVITVEYAQGEDSDRRGGYS 177
Query: 233 PDRNRDRSPDRGRRRSPSPYRRER---GSPDYGRGSSRSPYRRERGSPDYGRVRSPSPYR 289
SP + RR + R+R SP YGR R RGSPDYGR RS
Sbjct: 178 -------SPIQSRRYGKAADVRDRDRSASPRYGR-------RPVRGSPDYGRARS----- 218
Query: 290 RDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSP 349
P Y R+S R + RA PSP
Sbjct: 219 -----PIYARSSERHSHDYGRA-----------------------------------PSP 238
Query: 350 NNGRGPSRSPYERERPSPENGRGGSRSPYRRERPSPDNGRVPSPNSMPEPR-DSPGYDGA 408
R P ER S D GR SP + PR D P Y
Sbjct: 239 IYARHP-------------------------ERHSHDYGRAASPVYVSRPRRDIPDYGRV 273
Query: 409 DSPINERYRSRSP 421
SP++ERYRSRSP
Sbjct: 274 ASPVHERYRSRSP 286
>gi|238481546|ref|NP_001154774.1| arginine/serine-rich-splicing factor RSP41 [Arabidopsis thaliana]
gi|332008782|gb|AED96165.1| arginine/serine-rich-splicing factor RSP41 [Arabidopsis thaliana]
Length = 324
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 211/354 (59%), Positives = 240/354 (67%), Gaps = 49/354 (13%)
Query: 89 GFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTR 148
GFAF+YM+DERDAEDAIR LDR E+GR GRRLRVEWTK++RG +RR S+ R
Sbjct: 3 GFAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVEWTKNDRGGAG--RSGGSRRSSSGLR 60
Query: 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMS 208
PSKTLFVINFD +TRTRDLERHFEPYGKI++VRIRRNFAF+QYE QEDATRALDATN S
Sbjct: 61 PSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSS 120
Query: 209 KLTDRVISVEYAVRDDDDRRNGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRS 268
KL D+VISVEYAV+DDD R NG+SP+R RDRS RRRSPSPYRRERGSPDYGRG+S
Sbjct: 121 KLMDKVISVEYAVKDDDSRGNGYSPERRRDRS-PDRRRRSPSPYRRERGSPDYGRGASPV 179
Query: 269 PYRRERGSPDYGRV-RSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRD 327
++RER SPDYGR RSPSPY+R R SPDY R+ R +ER A
Sbjct: 180 AHKRERTSPDYGRGRRSPSPYKRARLSPDYKRDDRR----RERVA--------------- 220
Query: 328 RGSPENGHGSSPSPYRKGKPSPNNGRGPSRS--PYERER----PSPENGRGGSRSP---- 377
SPENG + SP + GRG SRS PYE+ R P P R SRSP
Sbjct: 221 --SPENGAVRNRSPRK--------GRGESRSPPPYEKRRESRSPPPYEKRRESRSPPPYE 270
Query: 378 ------YRRERPSPDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRSPPAED 425
R + SP+NG+V SP + E GYDGADSPI E SRSPPAE+
Sbjct: 271 KRRERSRSRSKSSPENGQVESPGQIMEVEAGRGYDGADSPIRESSPSRSPPAEE 324
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 57 IFCGNFE-YDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRT 111
+F NF+ + R DLER F YGK+ V ++ FAFI + + EDA R LD T
Sbjct: 65 LFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQ---EDATRALDAT 117
>gi|227206136|dbj|BAH57123.1| AT5G52040 [Arabidopsis thaliana]
Length = 323
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 211/354 (59%), Positives = 240/354 (67%), Gaps = 50/354 (14%)
Query: 89 GFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTR 148
GFAF+YM+DERDAEDAIR LDR E+GR GRRLRVEWTK++RG +RR S+ R
Sbjct: 3 GFAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVEWTKNDRGGAG--RSGGSRRSSSGLR 60
Query: 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMS 208
PSKTLFVINFD +TRTRDLERHFEPYGKI++VRIRRNFAF+QYE QEDATRALDATN S
Sbjct: 61 PSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSS 120
Query: 209 KLTDRVISVEYAVRDDDDRRNGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRS 268
KL D+VISVEYAV+DDD R NG+SP+R RDRS RRRSPSPYRRERGSPDYGRG+S
Sbjct: 121 KLMDKVISVEYAVKDDDSRGNGYSPERRRDRS-PDRRRRSPSPYRRERGSPDYGRGASPV 179
Query: 269 PYRRERGSPDYGRV-RSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRD 327
++RER SPDYGR RSPSPY+R R SPDY R+ R +ER A
Sbjct: 180 AHKRERTSPDYGRGRRSPSPYKRARLSPDYKRDDRR----RERVA--------------- 220
Query: 328 RGSPENGHGSSPSPYRKGKPSPNNGRGPSRS--PYERER----PSPENGRGGSRSP---- 377
SPENG + SP + GRG SRS PYE+ R P P R SRSP
Sbjct: 221 --SPENGAVRNRSPRK--------GRGESRSPPPYEKRRESRSPPPYEKRRESRSPPPYE 270
Query: 378 ------YRRERPSPDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRSPPAED 425
R + SP+NG+V SP + E GYDGADSPI E SRSPPAE+
Sbjct: 271 KRRERSRSRSKSSPENGQVESPGQIMEVEAGRGYDGADSPIRES-PSRSPPAEE 323
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 57 IFCGNFE-YDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRT 111
+F NF+ + R DLER F YGK+ V ++ FAFI + + EDA R LD T
Sbjct: 65 LFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQ---EDATRALDAT 117
>gi|18412169|ref|NP_567120.1| arginine/serine-rich-splicing factor RSP31 [Arabidopsis thaliana]
gi|26454661|sp|P92964.2|RSP31_ARATH RecName: Full=Arginine/serine-rich-splicing factor RSP31
gi|16612268|gb|AAL27502.1|AF439831_1 AT3g61860/F21F14_30 [Arabidopsis thaliana]
gi|21928093|gb|AAM78075.1| AT3g61860/F21F14_30 [Arabidopsis thaliana]
gi|332646749|gb|AEE80270.1| arginine/serine-rich-splicing factor RSP31 [Arabidopsis thaliana]
Length = 264
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 168/283 (59%), Positives = 200/283 (70%), Gaps = 28/283 (9%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MRP+F GNFEY+ RQSDLERLF +YG+VDRVDMKSG+AF+Y +DERDAEDAIR LD F
Sbjct: 1 MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + RRL VEW K ERG RP G + A +N +P+KTLFVINFDP T+ D+E+HFE
Sbjct: 61 GYEKRRLSVEWAKGERG--RPRGDAKA---PSNLKPTKTLFVINFDPIRTKEHDIEKHFE 115
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSP 233
PYGK+ +VRIRRNF+FVQ+E QEDAT+AL+AT SK+ DRV+SVEYA++DDD+R
Sbjct: 116 PYGKVTNVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALKDDDER-----D 170
Query: 234 DRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSPYRRDRG 293
DRN RSP RRS SP R R SPDYGR SP + R SPDYGR RSP Y R +G
Sbjct: 171 DRNGGRSP----RRSLSPVYRRRPSPDYGRRP--SPGQGRRPSPDYGRARSPE-YDRYKG 223
Query: 294 --------SPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDR 328
SPDYGR S S Y ++R+ G+ R SRSP R R
Sbjct: 224 PAAYERRRSPDYGRRS--SDYGRQRSP-GYDRYRSRSPVPRGR 263
>gi|302762969|ref|XP_002964906.1| hypothetical protein SELMODRAFT_82477 [Selaginella moellendorffii]
gi|300167139|gb|EFJ33744.1| hypothetical protein SELMODRAFT_82477 [Selaginella moellendorffii]
Length = 214
Score = 274 bits (701), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 142/222 (63%), Positives = 171/222 (77%), Gaps = 18/222 (8%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MRP+FCGNFEYDARQS++ER+F ++GKVDRVDMK+GFAF+YM+DERDAEDAI+ LD EF
Sbjct: 1 MRPVFCGNFEYDARQSEIERMFAKFGKVDRVDMKTGFAFVYMEDERDAEDAIQDLDNVEF 60
Query: 114 GRKGRRLRVEWTKH-ERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHF 172
GR+ R LRVEW K + I+R ARR T RP+KTLFV+NFDP +TRTRDLERHF
Sbjct: 61 GRQRRPLRVEWAKQGDSAIKRR---EDARRSITKQRPTKTLFVVNFDPINTRTRDLERHF 117
Query: 173 EPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHS 232
EPYGK++ V+IR+NFAFVQYE QE+AT+AL++T++SK+ DRVISVEYA R++ D
Sbjct: 118 EPYGKLVRVQIRKNFAFVQYESQEEATKALESTHLSKVVDRVISVEYAARENGD------ 171
Query: 233 PDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRER 274
P RG RRSPSP R RGSPDYG G RSPY R R
Sbjct: 172 -------PPGRG-RRSPSPRHRSRGSPDYGGGRPRSPYSRHR 205
>gi|302809591|ref|XP_002986488.1| hypothetical protein SELMODRAFT_124209 [Selaginella moellendorffii]
gi|300145671|gb|EFJ12345.1| hypothetical protein SELMODRAFT_124209 [Selaginella moellendorffii]
Length = 214
Score = 274 bits (701), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 142/222 (63%), Positives = 171/222 (77%), Gaps = 18/222 (8%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MRP+FCGNFEYDARQS++ER+F ++GKVDRVDMK+GFAF+YM+DERDAEDAI+ LD EF
Sbjct: 1 MRPVFCGNFEYDARQSEIERMFAKFGKVDRVDMKTGFAFVYMEDERDAEDAIQDLDNVEF 60
Query: 114 GRKGRRLRVEWTKH-ERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHF 172
GR+ R LRVEW K + I+R ARR T RP+KTLFV+NFDP +TRTRDLERHF
Sbjct: 61 GRQRRPLRVEWAKQGDSAIKRR---EDARRSITKQRPTKTLFVVNFDPINTRTRDLERHF 117
Query: 173 EPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHS 232
EPYGK++ V+IR+NFAFVQYE QE+AT+AL++T++SK+ DRVISVEYA R++ D
Sbjct: 118 EPYGKLVRVQIRKNFAFVQYESQEEATKALESTHLSKVVDRVISVEYAARENGD------ 171
Query: 233 PDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRER 274
P RG RRSPSP R RGSPDYG G RSPY R R
Sbjct: 172 -------PPGRG-RRSPSPRHRSRGSPDYGGGRPRSPYSRHR 205
>gi|1707366|emb|CAA67798.1| splicing factor [Arabidopsis thaliana]
Length = 264
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 167/283 (59%), Positives = 200/283 (70%), Gaps = 28/283 (9%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MRP+F GNFEY+ RQSDLERLF +YG+VDRVDMKSG+AF+Y +DERDAEDAIR LD F
Sbjct: 1 MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + R+L VEW K ERG RP G + A +N +P+KTLFVINFDP T+ D+E+HFE
Sbjct: 61 GYEKRKLSVEWAKGERG--RPRGDAKA---PSNLKPTKTLFVINFDPIRTKEHDIEKHFE 115
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSP 233
PYGK+ +VRIRRNF+FVQ+E QEDAT+AL+AT SK+ DRV+SVEYA++DDD+R
Sbjct: 116 PYGKVTNVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALKDDDER-----D 170
Query: 234 DRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSPYRRDRG 293
DRN RSP RRS SP R R SPDYGR SP + R SPDYGR RSP Y R +G
Sbjct: 171 DRNGGRSP----RRSLSPVYRRRPSPDYGRRP--SPGQGRRPSPDYGRARSPE-YDRYKG 223
Query: 294 --------SPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDR 328
SPDYGR S S Y ++R+ G+ R SRSP R R
Sbjct: 224 PAAYERRRSPDYGRRS--SDYGRQRSP-GYDRYRSRSPVPRGR 263
>gi|6899884|emb|CAB71893.1| ARGININE/SERINE-RICH SPLICING FACTOR RSP31 [Arabidopsis thaliana]
Length = 271
Score = 274 bits (700), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 158/257 (61%), Positives = 186/257 (72%), Gaps = 25/257 (9%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MRP+F GNFEY+ RQSDLERLF +YG+VDRVDMKSG+AF+Y +DERDAEDAIR LD F
Sbjct: 1 MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + RRL VEW K ERG RP G + A +N +P+KTLFVINFDP T+ D+E+HFE
Sbjct: 61 GYEKRRLSVEWAKGERG--RPRGDAKA---PSNLKPTKTLFVINFDPIRTKEHDIEKHFE 115
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSP 233
PYGK+ +VRIRRNF+FVQ+E QEDAT+AL+AT SK+ DRV+SVEYA++DDD+R
Sbjct: 116 PYGKVTNVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALKDDDER-----D 170
Query: 234 DRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSPYRRDRG 293
DRN RSP RRS SP R R SPDYGR SP + R SPDYGR RSP Y R +G
Sbjct: 171 DRNGGRSP----RRSLSPVYRRRPSPDYGRRP--SPGQGRRPSPDYGRARSPE-YDRYKG 223
Query: 294 --------SPDYGRNSS 302
SPDYGR SS
Sbjct: 224 PAAYERRRSPDYGRRSS 240
>gi|238481544|ref|NP_001154773.1| arginine/serine-rich-splicing factor RSP41 [Arabidopsis thaliana]
gi|332008781|gb|AED96164.1| arginine/serine-rich-splicing factor RSP41 [Arabidopsis thaliana]
Length = 329
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 210/353 (59%), Positives = 239/353 (67%), Gaps = 50/353 (14%)
Query: 90 FAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRP 149
FAF+YM+DERDAEDAIR LDR E+GR GRRLRVEWTK++RG +RR S+ RP
Sbjct: 10 FAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVEWTKNDRGGAG--RSGGSRRSSSGLRP 67
Query: 150 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSK 209
SKTLFVINFD +TRTRDLERHFEPYGKI++VRIRRNFAF+QYE QEDATRALDATN SK
Sbjct: 68 SKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSK 127
Query: 210 LTDRVISVEYAVRDDDDRRNGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSP 269
L D+VISVEYAV+DDD R NG+SP+R RDRS RRRSPSPYRRERGSPDYGRG+S
Sbjct: 128 LMDKVISVEYAVKDDDSRGNGYSPERRRDRS-PDRRRRSPSPYRRERGSPDYGRGASPVA 186
Query: 270 YRRERGSPDYGRV-RSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDR 328
++RER SPDYGR RSPSPY+R R SPDY R+ R +ER A
Sbjct: 187 HKRERTSPDYGRGRRSPSPYKRARLSPDYKRDDRR----RERVA---------------- 226
Query: 329 GSPENGHGSSPSPYRKGKPSPNNGRGPSRS--PYERER----PSPENGRGGSRSP----- 377
SPENG + SP + GRG SRS PYE+ R P P R SRSP
Sbjct: 227 -SPENGAVRNRSPRK--------GRGESRSPPPYEKRRESRSPPPYEKRRESRSPPPYEK 277
Query: 378 -----YRRERPSPDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRSPPAED 425
R + SP+NG+V SP + E GYDGADSPI E SRSPPAE+
Sbjct: 278 RRERSRSRSKSSPENGQVESPGQIMEVEAGRGYDGADSPIRES-PSRSPPAEE 329
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 57 IFCGNFE-YDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRT 111
+F NF+ + R DLER F YGK+ V ++ FAFI + + EDA R LD T
Sbjct: 71 LFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQ---EDATRALDAT 123
>gi|116780574|gb|ABK21727.1| unknown [Picea sitchensis]
gi|116793253|gb|ABK26673.1| unknown [Picea sitchensis]
Length = 271
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 174/284 (61%), Positives = 201/284 (70%), Gaps = 23/284 (8%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M+P++CGN EY+ARQS++ERLF RYG+V+RVDMKSG+AFIYMDDERDAEDAIRGLD EF
Sbjct: 1 MKPLYCGNLEYEARQSEIERLFGRYGRVERVDMKSGYAFIYMDDERDAEDAIRGLDNREF 60
Query: 114 GRKGRRLRVEWTKH-ERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHF 172
GR+ RRL VEWTKH E+G RRP GG RR + +P+KTLFVINFDP T +DLE+HF
Sbjct: 61 GRQRRRLCVEWTKHPEKGFRRPEGG---RRSTMYIKPAKTLFVINFDPADTGVKDLEKHF 117
Query: 173 EPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHS 232
EPYGK+++VRIRRNFAFVQ+E QE+AT+AL +T+ SK+ D +ISVEYA RDD DRR G S
Sbjct: 118 EPYGKVLNVRIRRNFAFVQFESQEEATKALHSTDKSKVLDSIISVEYAQRDDGDRRGGRS 177
Query: 233 PDRNR---DRSPDRGRRRSPSPY---RRERGSPDYGRGSSRSPYRR-ERGSPDYGRVRSP 285
R RS + GR RS SP R R SPDYGR S RR ER SPDYGR SP
Sbjct: 178 SPVRRGSYGRSAE-GRDRSESPIYSRRALRDSPDYGRAPSPIYARRSERSSPDYGRAASP 236
Query: 286 SPYRR-DRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDR 328
RR R SPDYGR SP H R SRSP R R
Sbjct: 237 IYARRLQRDSPDYGR--VLSPV--------HERYRSRSPVMRSR 270
Score = 42.0 bits (97), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Query: 340 SPYRKGKPS-PNNGRGPSRSP-YERE--RPSPENGRGGSRSPYRR-ERPSPDNGRVPSPN 394
SP R+G GR S SP Y R R SP+ GR S RR ER SPD GR SP
Sbjct: 178 SPVRRGSYGRSAEGRDRSESPIYSRRALRDSPDYGRAPSPIYARRSERSSPDYGRAASPI 237
Query: 395 -SMPEPRDSPGYDGADSPINERYRSRSP 421
+ RDSP Y SP++ERYRSRSP
Sbjct: 238 YARRLQRDSPDYGRVLSPVHERYRSRSP 265
>gi|356520256|ref|XP_003528779.1| PREDICTED: arginine/serine-rich-splicing factor RSP31-like [Glycine
max]
Length = 259
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 168/283 (59%), Positives = 193/283 (68%), Gaps = 33/283 (11%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MRPIF GN EYD RQS+LERLF +YG++DRVDMKSGFAF+Y +DERDAE+AIR LD F
Sbjct: 1 MRPIFAGNLEYDTRQSELERLFAKYGRIDRVDMKSGFAFVYYEDERDAEEAIRALDNVPF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + RRL VEW + ERG R GS A N +P+KTLFVINFDP TR RD+E+HFE
Sbjct: 61 GHEKRRLSVEWARGERG--RHHDGSKA-----NQKPTKTLFVINFDPIRTRVRDIEKHFE 113
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSP 233
PYG ++ VRIRRNFAFVQ+E QEDAT+AL+ TNMSK+ DRV+SVEYA+RDD +R + +
Sbjct: 114 PYGNVLHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVSVEYALRDDGERGDNYDS 173
Query: 234 DRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSP-YRRERG-------SPDYGRVRSP 285
R R G RSPSPY R R SPDYGR RSP Y R G SPDYGR RSP
Sbjct: 174 PRRRG-----GYERSPSPYHR-RPSPDYGR--PRSPVYDRYNGGGPDMRRSPDYGRHRSP 225
Query: 286 SPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDR 328
RR SPDYG+ RSP G R SRSP RR R
Sbjct: 226 DYGRRR--SPDYGK--PRSP------EYGRYRSCSRSPVRRSR 258
>gi|297828391|ref|XP_002882078.1| hypothetical protein ARALYDRAFT_483824 [Arabidopsis lyrata subsp.
lyrata]
gi|297327917|gb|EFH58337.1| hypothetical protein ARALYDRAFT_483824 [Arabidopsis lyrata subsp.
lyrata]
Length = 250
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 155/273 (56%), Positives = 187/273 (68%), Gaps = 31/273 (11%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MRP+F GNF+YD RQSDLERLF +YG+V+RVDMKSG+AF+Y +DERDAEDAIRG D T F
Sbjct: 1 MRPVFVGNFDYDTRQSDLERLFSKYGRVERVDMKSGYAFVYFEDERDAEDAIRGTDNTTF 60
Query: 114 GRKGRRLRVEWTKHERGIR-RPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHF 172
G + R+L VEW K +G R +P G +A +N RP+KTLFVINFDP TR RD+ERHF
Sbjct: 61 GYERRKLSVEWAKGFKGERGKPRDGKAA----SNQRPTKTLFVINFDPIRTRERDMERHF 116
Query: 173 EPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHS 232
EPYGK+++VRIRRNFAFVQ+ QEDAT+ALD T+ SK+ DRV+SVEYA+R+D +R
Sbjct: 117 EPYGKVLNVRIRRNFAFVQFATQEDATKALDCTHNSKILDRVVSVEYALREDGER----- 171
Query: 233 PDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSPYR--- 289
DR RRRSPSP R R SPDYGR SP+Y R + P+PY
Sbjct: 172 ----EDRYAGSPRRRSPSPVYRRRPSPDYGRPR----------SPEYDRYKGPAPYERRR 217
Query: 290 ---RDRGSPDYGRNSSRSP-YKKERAAIGHGRG 318
R SPDYGR +RSP Y R+ I RG
Sbjct: 218 SPDYRRRSPDYGRARARSPGYDSSRSPIQRARG 250
>gi|449432024|ref|XP_004133800.1| PREDICTED: arginine/serine-rich-splicing factor RSP31-like [Cucumis
sativus]
gi|449477961|ref|XP_004155176.1| PREDICTED: arginine/serine-rich-splicing factor RSP31-like [Cucumis
sativus]
Length = 253
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 153/244 (62%), Positives = 176/244 (72%), Gaps = 20/244 (8%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MRPIF GNF YD RQS+LERLF +YG+V+R+DMKSGFAF+Y +DERDAEDAIRGLD F
Sbjct: 1 MRPIFVGNFGYDTRQSELERLFSKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G RRL VEW + ERG R G S A N RP+KTLFVINFDP TR RD+ERHFE
Sbjct: 61 GYDRRRLSVEWARGERGRHRDGSKSMA-----NQRPTKTLFVINFDPIRTRVRDIERHFE 115
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSP 233
PYGK+++VRIRRNFAFVQ+E QEDAT+AL+ T+MSK+ DRV+SVEYA+RDD +R G
Sbjct: 116 PYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGER--GDPF 173
Query: 234 DRNRDRSPDRGR------RRSPSPYRRERGSPDYGRGSS------RSPYRRERGSPDYGR 281
D + R+ GR RRSPSP R R SPDYGR S PY R R SPDYGR
Sbjct: 174 DESPRRAGGYGRPGDSPYRRSPSPVFRRRPSPDYGRAHSPAYDRYNGPYERRR-SPDYGR 232
Query: 282 VRSP 285
RSP
Sbjct: 233 NRSP 236
>gi|297821068|ref|XP_002878417.1| arginine/serine-rich splicing factor 31 [Arabidopsis lyrata subsp.
lyrata]
gi|297324255|gb|EFH54676.1| arginine/serine-rich splicing factor 31 [Arabidopsis lyrata subsp.
lyrata]
Length = 264
Score = 270 bits (691), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 163/281 (58%), Positives = 198/281 (70%), Gaps = 24/281 (8%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MRP+F GNFEY+ RQSDLERLF +YG+V+RVDMKSG+AF+Y +DERDAEDAIR LD F
Sbjct: 1 MRPVFVGNFEYETRQSDLERLFDKYGRVERVDMKSGYAFVYFEDERDAEDAIRKLDNFPF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + RRL VEW K ERG RP G + A ++N +P+KTLFVINFDP T+ D+E+HFE
Sbjct: 61 GYEKRRLSVEWAKGERG--RPRGDAKA---TSNLKPTKTLFVINFDPIRTKEHDIEKHFE 115
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSP 233
PYGK+I+VRIRRNF+FVQ+E QEDAT+AL+AT SK+ DRV+SVEYA++DDD+R
Sbjct: 116 PYGKVINVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALKDDDER-----D 170
Query: 234 DRNRDRSPDRGRRRSPSPYRRERGSPDYGR------GSSRSPYRRERGSPDYGRVRSPSP 287
DR RSP RRS SP R R SPDYGR G SP SP+Y R + P+
Sbjct: 171 DRYGGRSP----RRSLSPVYRRRPSPDYGRRPSPDYGRRPSPDNGRARSPEYDRYKGPAA 226
Query: 288 YRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDR 328
Y R R SPDYGR S S Y ++R+ G+ R SRSP R R
Sbjct: 227 YER-RRSPDYGRRS--SDYGRQRSP-GYDRYRSRSPVPRGR 263
>gi|225470972|ref|XP_002267297.1| PREDICTED: arginine/serine-rich-splicing factor RSP31-like [Vitis
vinifera]
Length = 241
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 156/251 (62%), Positives = 177/251 (70%), Gaps = 29/251 (11%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MRPIFCGNFEY+ RQSDLERLF +YG+V+RVDMKSGFAF+Y +DE DA+DAIRGLD F
Sbjct: 1 MRPIFCGNFEYETRQSDLERLFSKYGRVERVDMKSGFAFVYFEDEHDADDAIRGLDNIPF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G RRL VEW K ERG R G S A N RP+KTLFVINFDP TR RD+ERHFE
Sbjct: 61 GYDRRRLSVEWAKGERGRHREGSRSMA-----NQRPTKTLFVINFDPIRTRIRDIERHFE 115
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDD-----RR 228
PYGK++ VRIRRNFAFVQYE QEDAT+AL+ T+MSK+ DRV+SVEYA+RDD D RR
Sbjct: 116 PYGKVLHVRIRRNFAFVQYETQEDATKALECTHMSKILDRVVSVEYALRDDSDKYDSPRR 175
Query: 229 NGHSPDRNRDRSPDRGRRRSPSPY-RRERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSP 287
G+S R SP RSPSP RR R SPDYGR SP Y R P+
Sbjct: 176 GGYS---RRGESP---YGRSPSPVNRRGRPSPDYGRAQ----------SPVYDRYNGPA- 218
Query: 288 YRRDRGSPDYG 298
Y R+R SP+YG
Sbjct: 219 YERNR-SPEYG 228
>gi|356559961|ref|XP_003548264.1| PREDICTED: arginine/serine-rich-splicing factor RSP31-like [Glycine
max]
Length = 264
Score = 268 bits (684), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 156/258 (60%), Positives = 181/258 (70%), Gaps = 28/258 (10%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MRPIF GN EYD RQS+LERLF +YG++DRVDMKSGFAF+Y +DERDAE+AIR LD F
Sbjct: 1 MRPIFAGNLEYDTRQSELERLFSKYGRIDRVDMKSGFAFVYYEDERDAEEAIRALDNVPF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + RRL VEW + ERG R G N +P+KTLFVINFDP TR RD+E+HFE
Sbjct: 61 GHEKRRLSVEWARGERGRHRDGS-------KANQKPTKTLFVINFDPIRTRVRDIEKHFE 113
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSP 233
PYG ++ VRIRRNFAFVQ+E QEDAT+A++ TNMSK+ DRV+SVEYA+RDD +R + +
Sbjct: 114 PYGNVLHVRIRRNFAFVQFETQEDATKAIECTNMSKILDRVVSVEYALRDDGERGDNYD- 172
Query: 234 DRNRDRSPDR-GRRRSPSPYRRERGSPDYGRGSSRSP-YRRERG-------SPDYGRVRS 284
SP R G RSPSPY R R SPDYGR RSP Y R G SPDYGR RS
Sbjct: 173 ------SPRRGGYERSPSPYHR-RPSPDYGR--PRSPVYDRYNGGGPDRRRSPDYGRHRS 223
Query: 285 PSPYRRDRGSPDYGRNSS 302
P RR SPDYGR S
Sbjct: 224 PDYGRRR--SPDYGRRKS 239
>gi|255645349|gb|ACU23171.1| unknown [Glycine max]
Length = 259
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 166/283 (58%), Positives = 192/283 (67%), Gaps = 33/283 (11%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MRPIF GN EYD RQS+LERLF +YG++DRVDMKSGFAF++ +DERDAE+AIR LD F
Sbjct: 1 MRPIFAGNLEYDTRQSELERLFAKYGRIDRVDMKSGFAFVFYEDERDAEEAIRALDNVPF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + RRL VEW + ERG R GS A N +P+KTLFVINFDP TR RD+E+HFE
Sbjct: 61 GHEKRRLSVEWARGERG--RHHDGSKA-----NQKPTKTLFVINFDPIRTRVRDIEKHFE 113
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSP 233
PYG ++ VRIRRNFAFVQ+E QEDAT+AL+ TNMSK+ DRV+SVEYA+RDD +R + +
Sbjct: 114 PYGNVLHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVSVEYALRDDGERGDNYDS 173
Query: 234 DRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSP-YRRERG-------SPDYGRVRSP 285
R R G RSPSPY R R SPDYGR RSP Y R G SPDYGR RSP
Sbjct: 174 PRRRG-----GYERSPSPYHR-RPSPDYGR--PRSPVYDRYNGGGPDMRRSPDYGRHRSP 225
Query: 286 SPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDR 328
RR SPDYG+ RSP G R SRS RR R
Sbjct: 226 DYGRRR--SPDYGK--PRSP------EYGRYRSCSRSLVRRSR 258
>gi|255564609|ref|XP_002523299.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
gi|223537387|gb|EEF39015.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
Length = 259
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 150/249 (60%), Positives = 179/249 (71%), Gaps = 18/249 (7%)
Query: 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 112
M RPIF GNFE++ RQS+LERLF +YG+V+RVDMKSGFAF+Y +DERDA DAIRGLD
Sbjct: 1 MARPIFVGNFEFETRQSELERLFSKYGRVERVDMKSGFAFVYFEDERDAADAIRGLDNIS 60
Query: 113 FGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHF 172
FG R+L VEW + ERG R G S A N RP+KTLFVINFDP HTR D++RHF
Sbjct: 61 FGYDRRKLSVEWARGERGRHRDGSRSMA-----NQRPTKTLFVINFDPIHTRVEDIKRHF 115
Query: 173 EPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHS 232
E YG+++ VRIRRNFAFVQ+E QEDAT+AL+ T+M+K+ DRV+SVEYA+RDD +R G
Sbjct: 116 ERYGEVLHVRIRRNFAFVQFETQEDATKALECTHMTKILDRVVSVEYALRDDSER--GDK 173
Query: 233 PDRNRDRSPDRGRR--RSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSPYRR 290
D SP RG RSPSP R R SPDYGR +RSP + P Y R RSP Y R
Sbjct: 174 SD-----SPRRGSHYGRSPSPVYRRRPSPDYGR--ARSPVYDKYNGPSYDRRRSPE-YGR 225
Query: 291 DRGSPDYGR 299
D+ SP+YGR
Sbjct: 226 DQ-SPEYGR 233
>gi|168038912|ref|XP_001771943.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676725|gb|EDQ63204.1| predicted protein [Physcomitrella patens subsp. patens]
gi|448878393|gb|AGE46159.1| arginine/serine-rich splicing factor RS27 transcript I
[Physcomitrella patens subsp. patens]
Length = 233
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 146/239 (61%), Positives = 174/239 (72%), Gaps = 23/239 (9%)
Query: 52 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRT 111
A +RP++CGNFEYDARQS++ERLF+ YG+V+RVDMK+GF+FIYM+DERDAEDAIR LD
Sbjct: 3 AKIRPVYCGNFEYDARQSEIERLFKEYGRVERVDMKTGFSFIYMEDERDAEDAIRHLDNM 62
Query: 112 EFGRKGRRLRVEWTKHERG-IRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLER 170
EFGR+ RRL VEW K G IRR ARR +T RPSKTLFV+NFDP +TR RDLER
Sbjct: 63 EFGRQRRRLSVEWAKQGDGAIRRR---EDARRNNTKLRPSKTLFVVNFDPINTRVRDLER 119
Query: 171 HFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNG 230
HFEPYGK++ V+IR+NF FVQYE Q++AT+AL++TNMSK+ DRVI+VEYA R+D +
Sbjct: 120 HFEPYGKLVRVQIRKNFGFVQYETQDEATKALESTNMSKVMDRVITVEYAAREDGE---- 175
Query: 231 HSPDRNRDRSPDRGRRRSPSPYR-RERGSPDYGRGSSRSPYR---RERGSPDYGRVRSP 285
P GR SPS YR RGSP YGR RSP R R R P GR RSP
Sbjct: 176 ---------PPSSGRGGSPSRYRGSSRGSPSYGR--DRSPVRGSGRNRSPPARGRSRSP 223
>gi|296089073|emb|CBI38776.3| unnamed protein product [Vitis vinifera]
Length = 225
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 146/203 (71%), Positives = 166/203 (81%), Gaps = 8/203 (3%)
Query: 88 SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNT 147
+GFAF+YMDDERDAEDAIR LDRT FGRKGR+LRVEWTK ERGIRRPGG +R+ S N
Sbjct: 8 AGFAFVYMDDERDAEDAIRRLDRTVFGRKGRQLRVEWTKQERGIRRPGG---SRKSSANM 64
Query: 148 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNM 207
+PSKTLFVINFDP HTRTRDLERHF+ YGKI+++RIRRNFAF+Q+E QEDAT+ALDATNM
Sbjct: 65 KPSKTLFVINFDPIHTRTRDLERHFDLYGKILNIRIRRNFAFIQFESQEDATKALDATNM 124
Query: 208 SKLTDRVISVEYAV-RDDDDRRNGHSPD-RNRDRSPDR---GRRRSPSPYRRERGSPDYG 262
SK DRVISVEYA DDDDRRNG+SP+ R RD SPDR R RSPSPY R+R SPDYG
Sbjct: 125 SKFMDRVISVEYAARDDDDDRRNGYSPERRGRDMSPDRRSHDRGRSPSPYHRDRASPDYG 184
Query: 263 RGSSRSPYRRERGSPDYGRVRSP 285
G++ + RGSP+Y R SP
Sbjct: 185 HGANANSRSEPRGSPNYDRDESP 207
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 36/52 (69%)
Query: 371 RGGSRSPYRRERPSPDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRSPP 422
RG S SPY R+R SPD G + NS EPR SP YD +SP+NERY SRSPP
Sbjct: 167 RGRSPSPYHRDRASPDYGHGANANSRSEPRGSPNYDRDESPVNERYHSRSPP 218
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 52 AMMRP---IFCGNFE-YDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRG 107
A M+P +F NF+ R DLER F YGK+ + ++ FAFI + + DA A+
Sbjct: 62 ANMKPSKTLFVINFDPIHTRTRDLERHFDLYGKILNIRIRRNFAFIQFESQEDATKALDA 121
Query: 108 LDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARR 142
+ ++F R + VE+ + R G S RR
Sbjct: 122 TNMSKF--MDRVISVEYAARDDDDDRRNGYSPERR 154
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 39/68 (57%), Gaps = 10/68 (14%)
Query: 315 HGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSPENGRGGS 374
H RG S SPY RDR SP+ GHG++ + + + SPN Y+R+ SP N R S
Sbjct: 165 HDRGRSPSPYHRDRASPDYGHGANANSRSEPRGSPN---------YDRDE-SPVNERYHS 214
Query: 375 RSPYRRER 382
RSP RER
Sbjct: 215 RSPPPRER 222
>gi|357514487|ref|XP_003627532.1| Arginine/serine-rich splicing factor [Medicago truncatula]
gi|355521554|gb|AET02008.1| Arginine/serine-rich splicing factor [Medicago truncatula]
Length = 301
Score = 261 bits (667), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 155/254 (61%), Positives = 178/254 (70%), Gaps = 25/254 (9%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MRP+F GN EYD RQS+LERLF +YG+++RVDMKSGFAF+Y +DERDAE+AIR LD F
Sbjct: 1 MRPVFAGNLEYDTRQSELERLFSKYGRIERVDMKSGFAFVYYEDERDAEEAIRALDNIPF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G RRL VEW + ERG R G N +P+KTLFVINFDP TR D+ERHF+
Sbjct: 61 GHDKRRLSVEWARGERGRHRDGS-------KPNQKPTKTLFVINFDPIRTRVSDIERHFK 113
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRN--GH 231
PYG + VRIRRNFAFVQYE QEDAT+AL+ TNMSK+ DRV+SVEYA+RDD DR + G
Sbjct: 114 PYGPLHHVRIRRNFAFVQYETQEDATKALECTNMSKILDRVVSVEYALRDDSDRVDNYGG 173
Query: 232 SPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSP-YRRERG-----SPDYGRVRSP 285
SP R G RSPSP R R SPDYGR RSP Y R G SPDYGR RSP
Sbjct: 174 SPRRG------GGLARSPSPGYRRRPSPDYGR--PRSPVYDRYTGPDRRRSPDYGRNRSP 225
Query: 286 SPYRRDRGSPDYGR 299
Y R+R SP+YGR
Sbjct: 226 D-YGRNR-SPEYGR 237
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 109/255 (42%), Gaps = 39/255 (15%)
Query: 153 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQ---EDATRALDATNMSK 209
+F N + Y TR +LER F YG+I V ++ FAFV YE + E+A RALD
Sbjct: 4 VFAGNLE-YDTRQSELERLFSKYGRIERVDMKSGFAFVYYEDERDAEEAIRALDNIPFGH 62
Query: 210 LTDRVISVEYAVRDDDDRRNGHSPDRNRDRS-------PDRGRRRSPSPYRRERGSPDYG 262
R +SVE+A + R+G P++ ++ P R R ER YG
Sbjct: 63 -DKRRLSVEWARGERGRHRDGSKPNQKPTKTLFVINFDPIRTRVSDI-----ERHFKPYG 116
Query: 263 RGSSRSPYRRERGSPDYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRS 322
P R ++ V+ Y + ++ S ++ +
Sbjct: 117 ------PLHHVRIRRNFAFVQ----YETQEDATKALECTNMSKILDRVVSVEYALRDDSD 166
Query: 323 PYRRDRGSPENGHGS--SPSPYRKGKPSPNNGRGPSRSPYER-----ERPSPENGRGGSR 375
GSP G G SPSP + +PSP+ GR P Y+R R SP+ GR +R
Sbjct: 167 RVDNYGGSPRRGGGLARSPSPGYRRRPSPDYGR-PRSPVYDRYTGPDRRRSPDYGR--NR 223
Query: 376 SP-YRRERPSPDNGR 389
SP Y R R SP+ GR
Sbjct: 224 SPDYGRNR-SPEYGR 237
>gi|217072928|gb|ACJ84824.1| unknown [Medicago truncatula]
Length = 242
Score = 260 bits (665), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 153/257 (59%), Positives = 174/257 (67%), Gaps = 33/257 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MRP+F GN EYD RQS+LERLF +YG+++RVDMKSGFAF+Y +DERDAE+AIR LD F
Sbjct: 1 MRPVFAGNLEYDTRQSELERLFSKYGRIERVDMKSGFAFVYYEDERDAEEAIRALDNIPF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G RRL VEW + ERG R G N +P+KTLFVINFDP TR D+ERHF+
Sbjct: 61 GHDKRRLSVEWARGERGRHRDGS-------KPNQKPTKTLFVINFDPIRTRVSDIERHFK 113
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRN--GH 231
PYG + VRIRRNFAFVQYE QEDAT+AL+ TNMSK+ DRV+SVEYA+RDD DR + G
Sbjct: 114 PYGPLHHVRIRRNFAFVQYETQEDATKALECTNMSKILDRVVSVEYALRDDSDRVDNYGG 173
Query: 232 SPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSP-YRRERG-----SPDYGRVRSP 285
SP R G RSPSP R R SPDYGR RSP Y R G SPDYGR
Sbjct: 174 SPRRG------GGLARSPSPGYRRRPSPDYGR--PRSPVYDRYTGPDRRRSPDYGR---- 221
Query: 286 SPYRRDRGSPDYGRNSS 302
GSPDYGRN S
Sbjct: 222 ------NGSPDYGRNRS 232
>gi|388494340|gb|AFK35236.1| unknown [Medicago truncatula]
Length = 249
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 153/257 (59%), Positives = 174/257 (67%), Gaps = 33/257 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MRP+F GN EYD RQS+LERLF +YG+++RVDMKSGFAF+Y +DERDAE+AIR LD F
Sbjct: 1 MRPVFAGNLEYDTRQSELERLFSKYGRIERVDMKSGFAFVYYEDERDAEEAIRALDNIPF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G RRL VEW + ERG R G N +P+KTLFVINFDP TR D+ERHF+
Sbjct: 61 GHDKRRLSVEWARGERGRHRDGS-------KPNQKPTKTLFVINFDPIRTRVSDIERHFK 113
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRN--GH 231
PYG + VRIRRNFAFVQYE QEDAT+AL+ TNMSK+ DRV+SVEYA+RDD DR + G
Sbjct: 114 PYGPLHHVRIRRNFAFVQYETQEDATKALECTNMSKILDRVVSVEYALRDDSDRVDNYGG 173
Query: 232 SPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSP-YRRERG-----SPDYGRVRSP 285
SP R G RSPSP R R SPDYGR RSP Y R G SPDYGR
Sbjct: 174 SPRRG------GGLARSPSPGYRRRPSPDYGR--PRSPVYDRYTGPDRRRSPDYGR---- 221
Query: 286 SPYRRDRGSPDYGRNSS 302
GSPDYGRN S
Sbjct: 222 ------NGSPDYGRNRS 232
>gi|388506284|gb|AFK41208.1| unknown [Medicago truncatula]
Length = 249
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 154/253 (60%), Positives = 177/253 (69%), Gaps = 25/253 (9%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MRP+F GN EYD RQS+LERLF +YG+++RVDMKSGFAF+Y +DERDAE+AIR LD F
Sbjct: 1 MRPVFAGNLEYDTRQSELERLFSKYGRIERVDMKSGFAFVYYEDERDAEEAIRALDNIPF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G RRL VEW + ERG R G N +P+KTLFVINFDP TR D+ERHF+
Sbjct: 61 GHDKRRLSVEWARGERGRHRDGS-------KPNQKPTKTLFVINFDPIRTRVSDIERHFK 113
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRN--GH 231
PYG + VRIRRNFAFVQYE QEDAT+AL+ TNMSK+ DRV+SVEYA+RDD DR + G
Sbjct: 114 PYGPLHHVRIRRNFAFVQYETQEDATKALECTNMSKILDRVVSVEYALRDDSDRVDNYGG 173
Query: 232 SPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSP-YRRERG-----SPDYGRVRSP 285
SP R G RSPSP R R SPDYGR RSP Y R G SPDYGR RSP
Sbjct: 174 SPRRG------GGLARSPSPGYRRRPSPDYGR--PRSPVYDRYTGPDRRRSPDYGRNRSP 225
Query: 286 SPYRRDRGSPDYG 298
Y R+R SP+YG
Sbjct: 226 D-YGRNR-SPEYG 236
>gi|297741108|emb|CBI31839.3| unnamed protein product [Vitis vinifera]
Length = 196
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 148/201 (73%), Positives = 161/201 (80%), Gaps = 20/201 (9%)
Query: 86 MKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPST 145
GFAFIYM+DERDAEDAIRGLDRT FGRKGRRLRVEWTK ERGIRRP S +RR ST
Sbjct: 11 FTQGFAFIYMEDERDAEDAIRGLDRTGFGRKGRRLRVEWTKQERGIRRP---SGSRRSST 67
Query: 146 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDAT 205
N RP+KTLFVINFDPY+TRTRDLERHF+PYGKI+++RIRRNFAF+QYE QEDATRAL+AT
Sbjct: 68 NLRPAKTLFVINFDPYNTRTRDLERHFDPYGKILNIRIRRNFAFIQYESQEDATRALEAT 127
Query: 206 NMSKLTDRVISVEYAVRDDDDRRNGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGS 265
NMSKL DRVISVEYAVRDDD+RRNG+SPD GRRR +ER S D RG
Sbjct: 128 NMSKLMDRVISVEYAVRDDDERRNGYSPD---------GRRRD-----KERTSHDSARGP 173
Query: 266 SRSPYRRE---RGSPDYGRVR 283
SRSPYR E R PDYGR R
Sbjct: 174 SRSPYRSERSDRAIPDYGRGR 194
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 55 RPIFCGNFE-YDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
+ +F NF+ Y+ R DLER F YGK+ + ++ FAFI + + EDA R L+ T
Sbjct: 73 KTLFVINFDPYNTRTRDLERHFDPYGKILNIRIRRNFAFIQYESQ---EDATRALEATNM 129
Query: 114 GR-KGRRLRVEWTKHERGIRRPGGGSSARR 142
+ R + VE+ + RR G RR
Sbjct: 130 SKLMDRVISVEYAVRDDDERRNGYSPDGRR 159
>gi|15226019|ref|NP_182184.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|4415941|gb|AAD20171.1| putative arginine/serine-rich splicing factor [Arabidopsis
thaliana]
gi|17529006|gb|AAL38713.1| putative arginine/serine-rich splicing factor [Arabidopsis
thaliana]
gi|24030496|gb|AAN41395.1| putative arginine/serine-rich splicing factor [Arabidopsis
thaliana]
gi|222423842|dbj|BAH19886.1| AT2G46610 [Arabidopsis thaliana]
gi|330255634|gb|AEC10728.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 250
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 153/278 (55%), Positives = 192/278 (69%), Gaps = 30/278 (10%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MR ++ GNF+YD R SDLERLF ++G+V RVDMKSG+AF+Y +DERDAEDAIR D T F
Sbjct: 1 MRHVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIRRTDNTTF 60
Query: 114 GRKGRRLRVEWTKHERGIR-RPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHF 172
G R+L VEW K +G R +P G + +N RP+KTLFVINFDP TR RD+ERHF
Sbjct: 61 GYGRRKLSVEWAKDFQGERGKPRDGKAV----SNQRPTKTLFVINFDPIRTRERDMERHF 116
Query: 173 EPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHS 232
EPYGK+++VR+RRNFAFVQ+ QEDAT+ALD+T+ SKL D+V+SVEYA+R+ +R + ++
Sbjct: 117 EPYGKVLNVRMRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYALREAGEREDRYA 176
Query: 233 PDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSPYRRDR 292
R RRRSPSP R R SPDY R R SP+Y R + P+PY R R
Sbjct: 177 GSR---------RRRSPSPVYRRRPSPDYTR----------RRSPEYDRYKGPAPYER-R 216
Query: 293 GSPDYGRNSSRSPYKKERA-AIGHGRGPSRSPYRRDRG 329
SPDYGR S S Y + RA + G+ R SRSP +R RG
Sbjct: 217 KSPDYGRRS--SDYGRARARSPGYDR--SRSPIQRARG 250
>gi|224068024|ref|XP_002302651.1| predicted protein [Populus trichocarpa]
gi|222844377|gb|EEE81924.1| predicted protein [Populus trichocarpa]
Length = 236
Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 146/250 (58%), Positives = 180/250 (72%), Gaps = 18/250 (7%)
Query: 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 112
M RP+F GNFE++ RQSDLERLF +YG+V+RVDMKSGFAF+Y +D+RDA DA+RGLD
Sbjct: 1 MARPVFVGNFEHETRQSDLERLFSKYGRVERVDMKSGFAFVYFEDDRDAADAVRGLDNIP 60
Query: 113 FGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHF 172
FG RRL VEW + ERG R G S+A N RP+KTLFVINFDP HTR D++RHF
Sbjct: 61 FGYDRRRLSVEWARGERGRHRDGPRSTA-----NQRPTKTLFVINFDPIHTRVEDIKRHF 115
Query: 173 EPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHS 232
E YG+++ VRIRRNFAFVQ+E QEDAT+AL+ T+M+K+ DRV+SVEYA+RDD +R + +
Sbjct: 116 ERYGEVLHVRIRRNFAFVQFETQEDATKALECTHMTKILDRVVSVEYALRDDSERGDRYD 175
Query: 233 PDRNRDRSPDRGRR--RSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSPYRR 290
SP RG RSPSP R R SPDY R +RSP + P Y R +SP Y R
Sbjct: 176 -------SPRRGSYNGRSPSPVYRRRPSPDYVR--ARSPVYDKYNGPVYDRRQSPD-YGR 225
Query: 291 DRGSPDYGRN 300
+R SP+YGRN
Sbjct: 226 NR-SPEYGRN 234
>gi|326494512|dbj|BAJ90525.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 247
Score = 257 bits (656), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 157/258 (60%), Positives = 183/258 (70%), Gaps = 35/258 (13%)
Query: 89 GFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTR 148
GFAF+YM+DERDAEDAIR LDRT+FGR GRRLRVEWTK +R R G G +R ++ +
Sbjct: 6 GFAFVYMEDERDAEDAIRRLDRTDFGRTGRRLRVEWTKEDRSGGRKGNG---KRSPSSVK 62
Query: 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMS 208
P+KTLFVINFDP +TRTRDLE+HF+ YGKI ++RIRRNFAFVQYE Q+DAT+ALD TN S
Sbjct: 63 PTKTLFVINFDPINTRTRDLEKHFDLYGKIANIRIRRNFAFVQYETQKDATKALDGTNGS 122
Query: 209 KLTDRVISVEYAVRDDDDRRNGHSPDR--NRDRSPDR--GRRRSPSPY--RRERGSPDYG 262
+ DRVISVEYA+RDDD++RNG+SPDR RDRSPDR R RS SPY RERGSPDYG
Sbjct: 123 TVMDRVISVEYALRDDDEKRNGYSPDRRGGRDRSPDRRDNRGRSASPYGRGRERGSPDYG 182
Query: 263 RGSSRSPYRRERGSPDYGR---------VRSPSPYRR---DRGSPDYGRNSSRSPYKKER 310
RG RERGSPDYG+ VR SPY DR SP Y R ++
Sbjct: 183 RG-------RERGSPDYGKGGARDSPDYVRGGSPYGSKGDDRASPKYDR-------ERRE 228
Query: 311 AAIGHGRGPSRSPYRRDR 328
A+ + R SRSP R DR
Sbjct: 229 ASPAYDRRRSRSPAREDR 246
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 54 MRPIFCGNFE-YDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLD 109
+ +F NF+ + R DLE+ F YGK+ + ++ FAF+ + ++DA A+ G +
Sbjct: 64 TKTLFVINFDPINTRTRDLEKHFDLYGKIANIRIRRNFAFVQYETQKDATKALDGTN 120
>gi|224130604|ref|XP_002320882.1| predicted protein [Populus trichocarpa]
gi|222861655|gb|EEE99197.1| predicted protein [Populus trichocarpa]
Length = 236
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 141/242 (58%), Positives = 168/242 (69%), Gaps = 23/242 (9%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFG 114
RPIF GNFE + RQS+LERLFR+YG+V+RVDMKSGFAF+Y +D+RDA DAIRGLD FG
Sbjct: 1 RPIFVGNFEQETRQSELERLFRKYGRVERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 60
Query: 115 RKGRRLRVEWTKH---ERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERH 171
RRL VEW + ERG R G R + N RP+KTLFVINFDP HTR D++RH
Sbjct: 61 YDRRRLSVEWARVYAGERGRHRDGP-----RSTVNQRPTKTLFVINFDPIHTRVEDIKRH 115
Query: 172 FEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGH 231
FE YG+++ VRIRRNFAFVQ+E QEDAT+AL T+M+K+ DRV+SVEYA+RDD +R + +
Sbjct: 116 FERYGEVLHVRIRRNFAFVQFETQEDATKALQRTHMTKILDRVVSVEYALRDDSERGDRY 175
Query: 232 SPDRNRDRSPDRGRR--RSPSPYRRERGSPDYGRGSS------RSPYRRERGSPDYGRVR 283
SP RG RSPSP R +PDYGRG S P R SPDYGR R
Sbjct: 176 D-------SPRRGSYYGRSPSPAHHRRPNPDYGRGHSPVYDKYNGPVHDRRRSPDYGRNR 228
Query: 284 SP 285
SP
Sbjct: 229 SP 230
>gi|115456922|ref|NP_001052061.1| Os04g0118900 [Oryza sativa Japonica Group]
gi|38344865|emb|CAE01291.2| OSJNBa0020P07.8 [Oryza sativa Japonica Group]
gi|113563632|dbj|BAF13975.1| Os04g0118900 [Oryza sativa Japonica Group]
gi|116317923|emb|CAH65946.1| H0716A07.4 [Oryza sativa Indica Group]
gi|218194243|gb|EEC76670.1| hypothetical protein OsI_14641 [Oryza sativa Indica Group]
gi|222628274|gb|EEE60406.1| hypothetical protein OsJ_13581 [Oryza sativa Japonica Group]
Length = 245
Score = 241 bits (614), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 131/220 (59%), Positives = 162/220 (73%), Gaps = 13/220 (5%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MRP+F GN +YD R S+L+RLF RYG++DR+DMKSGFAF+Y +DERD ++AIR LD F
Sbjct: 1 MRPVFVGNLDYDTRHSELDRLFYRYGRIDRIDMKSGFAFVYFEDERDGDEAIRALDGYPF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G RRL VEW++ +RG RR G +P NT+P+KTLFVINFDP +TR D+ERHFE
Sbjct: 61 GPGRRRLSVEWSRGDRGSRRDG----YSKPPVNTKPTKTLFVINFDPINTRVTDIERHFE 116
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSP 233
P+GK+ +VRIRRNFAFVQ+E QE+AT+AL+AT+ +KL DRVISVEYA RDD +R + +
Sbjct: 117 PFGKLSNVRIRRNFAFVQFETQEEATKALEATHSTKLLDRVISVEYAFRDDTERGDRYDG 176
Query: 234 DRN----RDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSP 269
R RD SP RRS SP R R SPDYGR RSP
Sbjct: 177 ARGGYGRRDDSP---YRRSVSPVYRSRPSPDYGR--QRSP 211
>gi|223973269|gb|ACN30822.1| unknown [Zea mays]
gi|413935349|gb|AFW69900.1| hypothetical protein ZEAMMB73_675088 [Zea mays]
gi|413935350|gb|AFW69901.1| hypothetical protein ZEAMMB73_675088 [Zea mays]
Length = 238
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 150/251 (59%), Positives = 179/251 (71%), Gaps = 31/251 (12%)
Query: 95 MDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLF 154
M+DERDAEDAI LD +FGRKGRR+RVEWTK +R + R SS+RR TNT+P+KTLF
Sbjct: 1 MEDERDAEDAISRLDGIDFGRKGRRIRVEWTKEDRTVGRK---SSSRRSPTNTKPTKTLF 57
Query: 155 VINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRV 214
VINFDP +TR RDLERHF+ YG++ +VRI++NFAF+Q+E+QEDATRAL+ TN S DRV
Sbjct: 58 VINFDPINTRIRDLERHFDKYGRVANVRIKKNFAFIQFEIQEDATRALEGTNGSHFMDRV 117
Query: 215 ISVEYAVRDDD---DRRNGHSPD-RNRDRSPDRGRRRSPSPY--RRERGSPDYGRGSSRS 268
ISVEYA+RDDD +R NG+SPD R R+RSP GRRRSPSPY RERGSPDYGR
Sbjct: 118 ISVEYALRDDDEKGERGNGYSPDRRGRERSP--GRRRSPSPYGRGRERGSPDYGRS---- 171
Query: 269 PYRRERGSPDYGR-VRSP------SPYRRDRGSPDYGRNSSRSP----YKKERAAIGHGR 317
+ERGSPDYGR RSP SP RG D+ R RSP ++E + G+ R
Sbjct: 172 ---KERGSPDYGRGGRSPDNGRGVSPAGGGRG--DHARGGGRSPDYDRQRREASPPGYDR 226
Query: 318 GPSRSPYRRDR 328
PSRSP R R
Sbjct: 227 SPSRSPGREAR 237
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 54 MRPIFCGNFE-YDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 112
+ +F NF+ + R DLER F +YG+V V +K FAFI + + DA A+ G + +
Sbjct: 53 TKTLFVINFDPINTRIRDLERHFDKYGRVANVRIKKNFAFIQFEIQEDATRALEGTNGSH 112
Query: 113 F 113
F
Sbjct: 113 F 113
>gi|195615816|gb|ACG29738.1| arginine/serine-rich splicing factor RSP41 [Zea mays]
gi|223947499|gb|ACN27833.1| unknown [Zea mays]
gi|413926667|gb|AFW66599.1| arginine/serine-rich splicing factor RSP41 [Zea mays]
Length = 270
Score = 234 bits (597), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 129/200 (64%), Positives = 154/200 (77%), Gaps = 19/200 (9%)
Query: 89 GFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTR 148
GFAFIYM+DERDAEDAI LD +FGRKGRR++VEWTK +R R G ++RR TN +
Sbjct: 19 GFAFIYMEDERDAEDAISRLDGIDFGRKGRRIKVEWTKEDRTADRRG---NSRRSPTNAK 75
Query: 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMS 208
P+KTLFVINFDP +TR RDLERHF+ YG++ +VRI++NFAF+Q+E QEDATRAL+ N S
Sbjct: 76 PTKTLFVINFDPINTRIRDLERHFDKYGRVANVRIKKNFAFIQFEAQEDATRALEGANGS 135
Query: 209 KLTDRVISVEYAVRDDDDR----RNGHSPD-RNRDRSPDRGRRRSPSPY--RRERGSPDY 261
DRVISVEYA+RDDD++ NG+SPD R R+RSP G RRSPSPY RERGSPDY
Sbjct: 136 HFMDRVISVEYALRDDDEKGERATNGYSPDRRGRERSP--GARRSPSPYGRGRERGSPDY 193
Query: 262 GRGSSRSPYRRERGSPDYGR 281
GRG +ERGSPDYGR
Sbjct: 194 GRG-------KERGSPDYGR 206
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 54 MRPIFCGNFE-YDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 112
+ +F NF+ + R DLER F +YG+V V +K FAFI + + DA A+ G + +
Sbjct: 77 TKTLFVINFDPINTRIRDLERHFDKYGRVANVRIKKNFAFIQFEAQEDATRALEGANGSH 136
Query: 113 FGRKGRRLRVEWT---KHERGIRRPGGGSSARR 142
F R + VE+ E+G R G S RR
Sbjct: 137 F--MDRVISVEYALRDDDEKGERATNGYSPDRR 167
>gi|357165299|ref|XP_003580336.1| PREDICTED: arginine/serine-rich-splicing factor RSP31-like
[Brachypodium distachyon]
Length = 261
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 139/270 (51%), Positives = 176/270 (65%), Gaps = 21/270 (7%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MRP+F GN +YD R S+L+RLF RYG+++R+DMKSGFAF+Y +DERD +DAIR LD F
Sbjct: 1 MRPVFVGNLDYDTRHSELDRLFYRYGRIERIDMKSGFAFVYFEDERDGDDAIRALDGVPF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G R+L VEW++ +RG RR ++ P NT+P+KTLFVINFDP +TR D+ERHF+
Sbjct: 61 GPGRRKLSVEWSRGDRGTRRDDRDGYSK-PPVNTKPTKTLFVINFDPINTRVSDIERHFD 119
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSP 233
P+GKI +VRIR+NFAFVQ+E QE+AT+ALDAT+ +KL DRVISVEYA RDD + + +
Sbjct: 120 PFGKISNVRIRKNFAFVQFETQEEATKALDATHSTKLLDRVISVEYAFRDDSEPGDRYDR 179
Query: 234 DRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSP-YRRERGSPDYGRVRSPSPYRRDR 292
R+ S YRR S SP YRR R SPDYGR RSP+
Sbjct: 180 PIRGGGGGGGYGRQDDSSYRR-----------SVSPVYRRSRPSPDYGRPRSPAELSPVY 228
Query: 293 GSPDYGRNSSRSPYKKERAAIGHGRGPSRS 322
GS D R+ R Y+ GR P RS
Sbjct: 229 GSYDRSRSPVRDRYR--------GRSPLRS 250
>gi|47680295|gb|AAT37131.1| arginine/serine-rich splicing factor 1 [Zea mays]
gi|47680367|gb|AAT37122.1| arginine/serine-rich splicing factor 1 [Zea mays]
gi|195634831|gb|ACG36884.1| arginine/serine-rich splicing factor RSP41 [Zea mays]
Length = 240
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 137/248 (55%), Positives = 165/248 (66%), Gaps = 22/248 (8%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MRP+F GN +YD R S+L+ LF RYG+V+R+DMKSGFAF+Y +DERD DAIR LD F
Sbjct: 1 MRPVFVGNLDYDTRHSELDHLFYRYGRVERIDMKSGFAFVYFEDERDGSDAIRALDGYPF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G RRL VEW++ +R RR G +P NT+P+KTLFVINFDP TR D+ERHF
Sbjct: 61 GPGRRRLSVEWSRGDRAARRDGN-----KPEVNTKPTKTLFVINFDPMDTRVSDIERHFA 115
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGH-S 232
P+G I SVRIR+NFAFV++E E+A +AL+AT+ + L DRVISVEYA RDDD+R + + S
Sbjct: 116 PFGNISSVRIRKNFAFVRFETLEEARKALEATHATMLLDRVISVEYAFRDDDERSDRYDS 175
Query: 233 PDRNRDRSPDRGRRRSPSPYRRERGSPDYGR---------GSSRSPYR-RERGSPDYGRV 282
P R RR SP R R SPDYGR G SRSP R R R SP Y R
Sbjct: 176 PRRGGGYG-----RRGDSPAYRSRPSPDYGRPASPVYGSYGRSRSPVRDRYRRSPAY-RS 229
Query: 283 RSPSPYRR 290
RSP RR
Sbjct: 230 RSPPANRR 237
>gi|242075010|ref|XP_002447441.1| hypothetical protein SORBIDRAFT_06g001100 [Sorghum bicolor]
gi|241938624|gb|EES11769.1| hypothetical protein SORBIDRAFT_06g001100 [Sorghum bicolor]
gi|448878272|gb|AGE46099.1| arginine/serine-rich splicing factor RS28 transcript I [Sorghum
bicolor]
Length = 238
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 135/246 (54%), Positives = 166/246 (67%), Gaps = 20/246 (8%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MRP+F GN +YD R S+L++LF RYG+V+R+DMKSGFAF+Y +DERD DAIR LD F
Sbjct: 1 MRPVFVGNLDYDTRHSELDQLFYRYGRVERIDMKSGFAFVYFEDERDGNDAIRALDGYPF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G RRL VEW++ +R RR G +P NT+P++TLFVINFDP +TR D+ERHF
Sbjct: 61 GPGRRRLSVEWSRGDRAARRDGN-----KPEANTKPTRTLFVINFDPINTRVSDIERHFA 115
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGH-S 232
P+G + SVRIR+NFAFVQ+E E+A +ALDAT+ + L DRVISVEYA RDD +R + + S
Sbjct: 116 PFGNLSSVRIRKNFAFVQFETLEEARKALDATHATTLLDRVISVEYAFRDDSERSDRYDS 175
Query: 233 PDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSS-------RSPYR-RERGSPDYGRVRS 284
P R RR SP R R SPDYGR +S RSP R R R SP Y R RS
Sbjct: 176 PRRGGGYG-----RRGDSPVYRSRPSPDYGRPASPVYGSYDRSPVRDRYRRSPAY-RSRS 229
Query: 285 PSPYRR 290
P RR
Sbjct: 230 PRVNRR 235
>gi|326509639|dbj|BAJ87035.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 270
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 142/277 (51%), Positives = 175/277 (63%), Gaps = 39/277 (14%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MRP+FCGNF+Y+ RQSDLERLF +YG + R+D+KSG+AF+Y DERDAEDAIR L EF
Sbjct: 1 MRPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIRRLSNAEF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G RRL VEW++ E P + R + +P++TLFVINFDP T+ D+ERHF+
Sbjct: 61 GHSRRRLSVEWSRQEE----PVPKNRDRPTGADAKPTRTLFVINFDPVRTKVVDIERHFQ 116
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV------------ 221
PYGKI ++RIR+NFAFVQYE+QEDA+ A++ T+ S + DRV++VEYA
Sbjct: 117 PYGKIANIRIRKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRDDDNERDDRHG 176
Query: 222 -------RDDDDRRNGH---SPDRNRDR--SPDR---GRR---RSPSPYRRERGSPDYGR 263
R RR G SP R DR SP R GRR RSPSP R SPDY R
Sbjct: 177 SPRQGRDRYGSPRRGGDRYGSPRRGGDRYGSPKRANQGRRPYERSPSPRYRRDYSPDYDR 236
Query: 264 GSSRSPYRRERGSPDYGRVRSPSPYRRDRG-SPDYGR 299
R Y R+ G+P YGR RSP R +RG SP YGR
Sbjct: 237 ---RPCYDRQYGAP-YGRSRSPVYDRYERGRSPGYGR 269
>gi|224035701|gb|ACN36926.1| unknown [Zea mays]
gi|414588139|tpg|DAA38710.1| TPA: arginine/serine-rich splicing factor 2 [Zea mays]
Length = 239
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 136/260 (52%), Positives = 168/260 (64%), Gaps = 25/260 (9%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MRP+F GN +YD R S+L+RLF RYG+V+R+D+KSG+AF+Y +DERD DAIR LD F
Sbjct: 1 MRPVFVGNLDYDTRHSELDRLFYRYGRVERIDIKSGYAFVYFEDERDGNDAIRALDGYPF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G RRL VEW++ E+ RR G +P NT+P++TLFVINFDP +TR D+ERHF
Sbjct: 61 GPGRRRLSVEWSRGEQAGRRDGN-----KPEANTKPTRTLFVINFDPMNTRVSDIERHFT 115
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGH-S 232
P+G I SVRIR+NFAFVQ+E E+A +AL+AT+ + L DRVISVEYA RDD + + + S
Sbjct: 116 PFGNISSVRIRKNFAFVQFETMEEARKALEATHATTLLDRVISVEYAFRDDSEVSDRYGS 175
Query: 233 PDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSPYR-RD 291
P R RR SP R R SPDYGR + SP YG P P R R
Sbjct: 176 PRRGGGYG-----RRGDSPVYRSRPSPDYGRPA----------SPVYGSYDGPGPVRDRY 220
Query: 292 RGSPDYGRNSSRSPYKKERA 311
R SP Y SRSP K RA
Sbjct: 221 RRSPAY---RSRSPPAKRRA 237
>gi|413917962|gb|AFW57894.1| arginine/serine-rich splicing factor 1 variant 3 [Zea mays]
Length = 223
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 126/228 (55%), Positives = 154/228 (67%), Gaps = 20/228 (8%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MRP+F GN +YD R S+L+ LF RYG+V+R+DMKSGFAF+Y +DERD DAIR LD F
Sbjct: 1 MRPVFVGNLDYDTRHSELDHLFYRYGRVERIDMKSGFAFVYFEDERDGSDAIRALDGYPF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G RRL VEW++ +R RR G +P NT+P+KTLFVINFDP TR D+ERHF
Sbjct: 61 GPGRRRLSVEWSRGDRAARRDGN-----KPEVNTKPTKTLFVINFDPMDTRVSDIERHFA 115
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGH-S 232
P+G I SVRIR+NFAFV++E E+A +AL+AT+ + L DRVISVEYA RDDD+R + + S
Sbjct: 116 PFGNISSVRIRKNFAFVRFETLEEARKALEATHATMLLDRVISVEYAFRDDDERSDRYDS 175
Query: 233 PDRNRDRSPDRGRRRSPSPYRRERGSPDYGR---------GSSRSPYR 271
P R RR SP R R SPDYGR G SRSP R
Sbjct: 176 PRRGGGYG-----RRGDSPAYRSRPSPDYGRPASPVYGSYGRSRSPVR 218
>gi|47680305|gb|AAT37136.1| arginine/serine-rich splicing factor 2 [Zea mays]
gi|47680373|gb|AAT37127.1| arginine/serine-rich splicing factor 2 [Zea mays]
Length = 239
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 135/260 (51%), Positives = 167/260 (64%), Gaps = 25/260 (9%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MRP+F GN +YD R S+L+RLF RYG+V+R+D+KSG+AF+Y +DERD DAIR LD F
Sbjct: 1 MRPVFVGNLDYDTRHSELDRLFYRYGRVERIDIKSGYAFVYFEDERDGNDAIRALDGYPF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G RRL VEW++ E+ RR G +P NT+P++TLFVINFDP +TR D+ERHF
Sbjct: 61 GPGRRRLSVEWSRGEQAGRRDGN-----KPEANTKPTRTLFVINFDPMNTRVSDIERHFT 115
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGH-S 232
P+G I SVRIR+NFAFVQ+E E+A +AL+AT+ + L DRVISVEYA RDD + + + S
Sbjct: 116 PFGNISSVRIRKNFAFVQFETMEEARKALEATHATTLLDRVISVEYAFRDDSEVSDRYGS 175
Query: 233 PDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSPYR-RD 291
P R RR SP R R SPDYGR + SP YG P P R R
Sbjct: 176 PRRGGGYG-----RRGDSPVYRSRPSPDYGRPA----------SPVYGSYDGPGPVRDRY 220
Query: 292 RGSPDYGRNSSRSPYKKERA 311
R S Y SRSP K RA
Sbjct: 221 RRSLAY---RSRSPPAKRRA 237
>gi|357114378|ref|XP_003558977.1| PREDICTED: arginine/serine-rich-splicing factor RSP31-like
[Brachypodium distachyon]
Length = 286
Score = 218 bits (556), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 136/292 (46%), Positives = 175/292 (59%), Gaps = 53/292 (18%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MRP+FCGNF+YD RQ+DLERLF ++G++ R+DMKSG+AFIY +DERDAEDAI+ L +F
Sbjct: 1 MRPVFCGNFDYDTRQADLERLFSKHGRIARIDMKSGYAFIYFEDERDAEDAIKRLANADF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G RRL VEW++ + + + RP+ + +P++TLFVINFDP T+ +D+ERHFE
Sbjct: 61 GYNRRRLSVEWSRQVEPVPK-----NRDRPTGDAKPTRTLFVINFDPLRTKIQDIERHFE 115
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV------------ 221
PYGKI ++RIR+NFAFV+YE QE+A+ A+ T+ S + DRV++VEYA
Sbjct: 116 PYGKISNIRIRKNFAFVRYETQEEASVAVKHTDKSSILDRVLTVEYAFRDDDNERDDRYS 175
Query: 222 --RDDDDRRNGHSPDRNRDR------------SPDRGRRRSPSPYRRERG---------- 257
+ DDR + SP R DR SP RG R SP R ERG
Sbjct: 176 SPKRGDDRYS--SPRRGDDRYVSTRRGDDRYVSPRRGDNRYGSPKRAERGRARGSPYMRS 233
Query: 258 ---------SPDYGRGSSRSPYRRERGSPDYGRVRSPSPYRRDRG-SPDYGR 299
SPDY R + Y R R YGR RSP R DRG SP YGR
Sbjct: 234 PSPRYRRDYSPDYDRRPRNAGYDRPREGAPYGRSRSPVYARYDRGRSPGYGR 285
>gi|242037183|ref|XP_002465986.1| hypothetical protein SORBIDRAFT_01g049590 [Sorghum bicolor]
gi|241919840|gb|EER92984.1| hypothetical protein SORBIDRAFT_01g049590 [Sorghum bicolor]
Length = 266
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 137/257 (53%), Positives = 171/257 (66%), Gaps = 12/257 (4%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MRP+FCGNF++D RQ DLERLF +YG + R+DMK+G+AFIY +DERDAEDAIR LD F
Sbjct: 1 MRPVFCGNFDHDTRQYDLERLFSKYGSISRIDMKTGYAFIYFEDERDAEDAIRRLDNVSF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G R+L VEW++ + + S RP+ + +P++TLFVINFDP T+ +D+ERHFE
Sbjct: 61 GYDRRKLSVEWSRQVEPVPK-----SRDRPTGDVKPTRTLFVINFDPMRTKVQDIERHFE 115
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGH-- 231
PYGKI ++RIRRNFAFVQYE QE+A+ A+ T+ S + DRV++VEYA RDDD R+
Sbjct: 116 PYGKIANIRIRRNFAFVQYETQEEASAAVKNTDKSTILDRVVTVEYAFRDDDSERDDRYG 175
Query: 232 SPDRNR-DRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSPYRR 290
SP R DR RSPSP R SPDY R Y R G+ Y R RSP R
Sbjct: 176 SPKRGAYDRRRGNPYLRSPSPRYRREYSPDYDRRGRYPGYDRRDGAM-YER-RSPVYDRY 233
Query: 291 DRG-SPDYGR-NSSRSP 305
+RG SP Y R N RSP
Sbjct: 234 NRGRSPVYDRYNRGRSP 250
>gi|195628072|gb|ACG35866.1| arginine/serine-rich splicing factor RSP41 [Zea mays]
Length = 255
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 128/244 (52%), Positives = 158/244 (64%), Gaps = 33/244 (13%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MRP+FCGNF++D RQ DLERLF +YG + R+DMK G+AFIY +DERDAEDAIR LD F
Sbjct: 1 MRPVFCGNFDHDTRQYDLERLFSKYGPISRIDMKLGYAFIYFEDERDAEDAIRRLDNVSF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G RRL VEW++ + + S RP+ + +P++TLFVINFDP T+ +D+E+HFE
Sbjct: 61 GYNRRRLSVEWSRQVEPVPK-----SRDRPTGDVKPTRTLFVINFDPIRTKVQDIEKHFE 115
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDD-------- 225
PYGKI ++RIRRNFAFVQYE QE+A+ A+ T+ S + DRV++VEYA RDDD
Sbjct: 116 PYGKIANIRIRRNFAFVQYETQEEASAAVKNTDKSTILDRVVTVEYAFRDDDGDRDDRYD 175
Query: 226 -------DRRNGH------SPDRNRDRSPDRGRR-RSPSPYRR-----ERGSPDYGR-GS 265
DRR G SP RD PD GRR R P RR ER SP Y R G
Sbjct: 176 IPKQGAYDRRGGSPYMRSPSPRYRRDYGPDYGRRGRYPGYGRRDGAMYERRSPVYDRYGG 235
Query: 266 SRSP 269
RSP
Sbjct: 236 GRSP 239
>gi|414588138|tpg|DAA38709.1| TPA: hypothetical protein ZEAMMB73_778058 [Zea mays]
Length = 211
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 102/173 (58%), Positives = 131/173 (75%), Gaps = 5/173 (2%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MRP+F GN +YD R S+L+RLF RYG+V+R+D+KSG+AF+Y +DERD DAIR LD F
Sbjct: 1 MRPVFVGNLDYDTRHSELDRLFYRYGRVERIDIKSGYAFVYFEDERDGNDAIRALDGYPF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G RRL VEW++ E+ RR G +P NT+P++TLFVINFDP +TR D+ERHF
Sbjct: 61 GPGRRRLSVEWSRGEQAGRRDGN-----KPEANTKPTRTLFVINFDPMNTRVSDIERHFT 115
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDD 226
P+G I SVRIR+NFAFVQ+E E+A +AL+AT+ + L DRVISVEYA RDD +
Sbjct: 116 PFGNISSVRIRKNFAFVQFETMEEARKALEATHATTLLDRVISVEYAFRDDSE 168
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 153 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQ---EDATRALDATNMSK 209
+FV N D Y TR +L+R F YG++ + I+ +AFV +E + DA RALD
Sbjct: 4 VFVGNLD-YDTRHSELDRLFYRYGRVERIDIKSGYAFVYFEDERDGNDAIRALDGYPFGP 62
Query: 210 LTDRVISVEYAVRDDDDRRNGHSPDRN 236
R +SVE++ + RR+G+ P+ N
Sbjct: 63 -GRRRLSVEWSRGEQAGRRDGNKPEAN 88
>gi|212722812|ref|NP_001131484.1| uncharacterized protein LOC100192821 [Zea mays]
gi|194691660|gb|ACF79914.1| unknown [Zea mays]
gi|224032781|gb|ACN35466.1| unknown [Zea mays]
gi|413957159|gb|AFW89808.1| arginine/serine-rich splicing factor RSP41 isoform 1 [Zea mays]
gi|413957160|gb|AFW89809.1| arginine/serine-rich splicing factor RSP41 isoform 2 [Zea mays]
gi|413957161|gb|AFW89810.1| arginine/serine-rich splicing factor RSP41 isoform 3 [Zea mays]
Length = 255
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 128/244 (52%), Positives = 158/244 (64%), Gaps = 33/244 (13%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MRP+FCGNF++D RQ DLERLF +YG + R+DMK G+AFIY +DERDAEDAIR LD F
Sbjct: 1 MRPVFCGNFDHDTRQYDLERLFSKYGPISRIDMKLGYAFIYFEDERDAEDAIRRLDNVSF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G RRL VEW++ + + S RP+ + +P++TLFVINFDP T+ +D+E+HFE
Sbjct: 61 GYNRRRLSVEWSRQVEPVPK-----SRDRPTGDVKPTRTLFVINFDPIRTKVQDIEKHFE 115
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDD-------- 225
PYGKI ++RIRRNFAFVQYE QE+A+ A+ T+ S + DRV++VEYA RDDD
Sbjct: 116 PYGKIANIRIRRNFAFVQYETQEEASAAVKNTDKSTILDRVVTVEYAFRDDDGDRDDRYD 175
Query: 226 -------DRRNGH------SPDRNRDRSPDRGRR-RSPSPYRR-----ERGSPDYGR-GS 265
DRR G SP RD PD GRR R P RR ER SP Y R G
Sbjct: 176 IPKQGAYDRRGGSPYMRSPSPRYRRDYVPDYGRRGRYPGYGRRDGAMYERRSPVYDRYGG 235
Query: 266 SRSP 269
RSP
Sbjct: 236 GRSP 239
>gi|42571257|ref|NP_973702.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|330255635|gb|AEC10729.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 224
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 130/248 (52%), Positives = 166/248 (66%), Gaps = 30/248 (12%)
Query: 84 VDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIR-RPGGGSSARR 142
+ + +G+AF+Y +DERDAEDAIR D T FG R+L VEW K +G R +P G +
Sbjct: 5 LHIDAGYAFVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWAKDFQGERGKPRDGKAV-- 62
Query: 143 PSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRAL 202
+N RP+KTLFVINFDP TR RD+ERHFEPYGK+++VR+RRNFAFVQ+ QEDAT+AL
Sbjct: 63 --SNQRPTKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKAL 120
Query: 203 DATNMSKLTDRVISVEYAVRDDDDRRNGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYG 262
D+T+ SKL D+V+SVEYA+R+ +R + ++ R RRRSPSP R R SPDY
Sbjct: 121 DSTHNSKLLDKVVSVEYALREAGEREDRYAGSR---------RRRSPSPVYRRRPSPDYT 171
Query: 263 RGSSRSPYRRERGSPDYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERA-AIGHGRGPSR 321
R R SP+Y R + P+PY R R SPDYGR S S Y + RA + G+ R SR
Sbjct: 172 R----------RRSPEYDRYKGPAPYER-RKSPDYGRRS--SDYGRARARSPGYDR--SR 216
Query: 322 SPYRRDRG 329
SP +R RG
Sbjct: 217 SPIQRARG 224
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 54 MRPIFCGNFE-YDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 112
+ +F NF+ R+ D+ER F YGKV V M+ FAF+ + EDA + LD T
Sbjct: 68 TKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQ---EDATKALDSTH 124
Query: 113 FGR-KGRRLRVEWTKHERGIRRPGGGSSARRPS 144
+ + + VE+ E G R S RR S
Sbjct: 125 NSKLLDKVVSVEYALREAGEREDRYAGSRRRRS 157
>gi|357514489|ref|XP_003627533.1| Arginine/serine-rich splicing factor [Medicago truncatula]
gi|355521555|gb|AET02009.1| Arginine/serine-rich splicing factor [Medicago truncatula]
Length = 217
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 132/221 (59%), Positives = 149/221 (67%), Gaps = 25/221 (11%)
Query: 86 MKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPST 145
MKSGFAF+Y +DERDAE+AIR LD FG RRL VEW + ERG R G
Sbjct: 1 MKSGFAFVYYEDERDAEEAIRALDNIPFGHDKRRLSVEWARGERGRHRDGS-------KP 53
Query: 146 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDAT 205
N +P+KTLFVINFDP TR D+ERHF+PYG + VRIRRNFAFVQYE QEDAT+AL+ T
Sbjct: 54 NQKPTKTLFVINFDPIRTRVSDIERHFKPYGPLHHVRIRRNFAFVQYETQEDATKALECT 113
Query: 206 NMSKLTDRVISVEYAVRDDDDRRN--GHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGR 263
NMSK+ DRV+SVEYA+RDD DR + G SP R G RSPSP R R SPDYGR
Sbjct: 114 NMSKILDRVVSVEYALRDDSDRVDNYGGSPRRG------GGLARSPSPGYRRRPSPDYGR 167
Query: 264 GSSRSP-YRRERG-----SPDYGRVRSPSPYRRDRGSPDYG 298
RSP Y R G SPDYGR RSP Y R+R SP+YG
Sbjct: 168 --PRSPVYDRYTGPDRRRSPDYGRNRSPD-YGRNR-SPEYG 204
Score = 38.1 bits (87), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 54 MRPIFCGNFE-YDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 112
+ +F NF+ R SD+ER F+ YG + V ++ FAF+ + + DA A+ + ++
Sbjct: 58 TKTLFVINFDPIRTRVSDIERHFKPYGPLHHVRIRRNFAFVQYETQEDATKALECTNMSK 117
Query: 113 FGRKGRRLRVEWTKHERGIRRPGGGSSARR 142
R + VE+ + R G S RR
Sbjct: 118 I--LDRVVSVEYALRDDSDRVDNYGGSPRR 145
>gi|297745508|emb|CBI40588.3| unnamed protein product [Vitis vinifera]
Length = 224
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 128/221 (57%), Positives = 147/221 (66%), Gaps = 29/221 (13%)
Query: 84 VDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRP 143
+ + SGFAF+Y +DE DA+DAIRGLD FG RRL VEW K ERG R G S A
Sbjct: 14 LHISSGFAFVYFEDEHDADDAIRGLDNIPFGYDRRRLSVEWAKGERGRHREGSRSMA--- 70
Query: 144 STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALD 203
N RP+KTLFVINFDP TR RD+ERHFEPYGK++ VRIRRNFAFVQYE QEDAT+AL+
Sbjct: 71 --NQRPTKTLFVINFDPIRTRIRDIERHFEPYGKVLHVRIRRNFAFVQYETQEDATKALE 128
Query: 204 ATNMSKLTDRVISVEYAVRDDDD-----RRNGHSPDRNRDRSPDRGRRRSPSPY-RRERG 257
T+MSK+ DRV+SVEYA+RDD D RR G+S R SP RSPSP RR R
Sbjct: 129 CTHMSKILDRVVSVEYALRDDSDKYDSPRRGGYS---RRGESP---YGRSPSPVNRRGRP 182
Query: 258 SPDYGRGSSRSPYRRERGSPDYGRVRSPSPYRRDRGSPDYG 298
SPDYGR SP Y R P+ Y R+R SP+YG
Sbjct: 183 SPDYGRAQ----------SPVYDRYNGPA-YERNR-SPEYG 211
>gi|162457883|ref|NP_001105264.1| arginine/serine-rich splicing factor 2 variant 2 [Zea mays]
gi|47680309|gb|AAT37138.1| arginine/serine-rich splicing factor 2 variant 2 [Zea mays]
gi|47680375|gb|AAT37129.1| arginine/serine-rich splicing factor 2 variant 2 [Zea mays]
Length = 193
Score = 204 bits (520), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 98/173 (56%), Positives = 126/173 (72%), Gaps = 12/173 (6%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MRP+F GN +YD R S+L+RLF RYG+V+R+D+KSG+AF+Y +DERD DAIR LD F
Sbjct: 1 MRPVFVGNLDYDTRHSELDRLFYRYGRVERIDIKSGYAFVYFEDERDGNDAIRALDGYPF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G RRL VEW++ +P NT+P++TLFVINFDP +TR D+ERHF
Sbjct: 61 GPGRRRLSVEWSR------------DGNKPEANTKPTRTLFVINFDPMNTRVSDIERHFT 108
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDD 226
P+G I SVRIR+NFAFVQ+E E+A +AL+AT+ + L DRVISVEYA RDD +
Sbjct: 109 PFGNISSVRIRKNFAFVQFETMEEARKALEATHATTLLDRVISVEYAFRDDSE 161
>gi|384252478|gb|EIE25954.1| hypothetical protein COCSUDRAFT_12541 [Coccomyxa subellipsoidea
C-169]
Length = 162
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 85/156 (54%), Positives = 109/156 (69%), Gaps = 5/156 (3%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFG 114
RP+FCGNFEYDA ++ERLF RYG +DRVDMK+GFAF+YM D RD +DAIRGLD EFG
Sbjct: 5 RPVFCGNFEYDASVREIERLFDRYGSLDRVDMKTGFAFVYMRDSRDGDDAIRGLDGREFG 64
Query: 115 RKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEP 174
+ RRLRVEW K + +R +P+ TLFV+NFD TR RDLE+HFEP
Sbjct: 65 NRRRRLRVEWAKMDGEVR-----RREDLRRRQMKPATTLFVVNFDADRTRERDLEKHFEP 119
Query: 175 YGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKL 210
+G++ V+I+RN+AFVQ+E + A AL + N + L
Sbjct: 120 FGRLKRVQIKRNYAFVQFENVDQAADALKSVNGTHL 155
>gi|159475431|ref|XP_001695822.1| hypothetical protein CHLREDRAFT_80366 [Chlamydomonas reinhardtii]
gi|158275382|gb|EDP01159.1| predicted protein [Chlamydomonas reinhardtii]
Length = 170
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 113/170 (66%), Gaps = 11/170 (6%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFG 114
RP+F GNFEY+A + D+ RL +YG V+++DMK G+AF+ M + D + AIR LDRTE+G
Sbjct: 7 RPLFIGNFEYEAEERDIVRLMEKYGPVEKIDMKQGYAFVCMRYKEDGDVAIRKLDRTEWG 66
Query: 115 RKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEP 174
K R L+VEW + R+ +T+PS+TLFV+NFD T RD+ER+F
Sbjct: 67 YKKRMLKVEWAQKSEADRK-----------RDTKPSRTLFVVNFDVRRTTERDIERYFGR 115
Query: 175 YGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDD 224
+G++ V+I+++++FVQ++ EDA +A++ N +++ R ++VEY +D
Sbjct: 116 FGRLTRVQIKKSYSFVQFQNVEDAIKAMERANGAQMEGRTLAVEYVQNED 165
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 148 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQED---ATRALDA 204
RP + LF+ NF+ Y RD+ R E YG + + +++ +AFV +ED A R LD
Sbjct: 4 RPDRPLFIGNFE-YEAEERDIVRLMEKYGPVEKIDMKQGYAFVCMRYKEDGDVAIRKLDR 62
Query: 205 TNMSKLTDRVISVEYAVRDDDDRRNGHSPDRN 236
T R++ VE+A + + DR+ P R
Sbjct: 63 TEWG-YKKRMLKVEWAQKSEADRKRDTKPSRT 93
>gi|307105692|gb|EFN53940.1| hypothetical protein CHLNCDRAFT_25380 [Chlorella variabilis]
Length = 277
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 110/162 (67%), Gaps = 5/162 (3%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ GN+EYDA + +LER F +YG V+RV+ KSGF F++ D+RDAEDAI LD E+GR
Sbjct: 10 VYVGNYEYDASERELERTFDKYGPVERVEYKSGFCFVHYKDKRDAEDAIHALDGREWGRL 69
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYG 176
RRLRVE+ K++ +R ARR S + P++TLFV FDP RTRD+E+ FE +G
Sbjct: 70 RRRLRVEFAKNDANVRE---REKARRNSAD--PNRTLFVAGFDPRGIRTRDIEKAFEEFG 124
Query: 177 KIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
+++ I++ F+FV++E EDA A + + S++ R I+VE
Sbjct: 125 RLVRCEIKKTFSFVEFERIEDAKEACEQLHGSRINGREITVE 166
>gi|159477703|ref|XP_001696948.1| hypothetical protein CHLREDRAFT_120019 [Chlamydomonas reinhardtii]
gi|158274860|gb|EDP00640.1| predicted protein [Chlamydomonas reinhardtii]
Length = 169
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 104/166 (62%), Gaps = 5/166 (3%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFG 114
RPIFCGNFEY+A++ D+ RLF +G VD+++MK GFAF+YM D E A+ L E+G
Sbjct: 9 RPIFCGNFEYEAQERDVVRLFETFGPVDKIEMKEGFAFVYMRHVCDGEAAVAALHGWEWG 68
Query: 115 RKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEP 174
+ RRL+VEW K +R S R S + PS LFVINFDP T ++L R+F P
Sbjct: 69 VQRRRLKVEWGK----VRAVWAVGSGHRCS-GSPPSHKLFVINFDPSRTGEQELWRYFSP 123
Query: 175 YGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
+G++ V++ RNFAFV + DA A TN + L R ++VE++
Sbjct: 124 FGRVTRVQMVRNFAFVVFADLRDAVAAQQRTNGAILEGRTLNVEFS 169
>gi|6759507|emb|CAB69816.1| putative arginine/serine-rich splicing factor [Elaeis guineensis]
Length = 114
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 72/117 (61%), Positives = 89/117 (76%), Gaps = 5/117 (4%)
Query: 88 SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNT 147
+G+AF+Y +DE DAEDAIRG D FG RRL V+W++ +G R P G R TN
Sbjct: 1 TGYAFVYFEDEHDAEDAIRGPDDIPFGYSRRRLSVKWSR--QGERGPRHGF---RSMTNM 55
Query: 148 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDA 204
RP+KTLFVINFDP TR RD+ERHFEPYGKI++V+IRRNFAFVQ+E QE+AT+AL+
Sbjct: 56 RPTKTLFVINFDPIRTRVRDIERHFEPYGKILNVQIRRNFAFVQFETQEEATKALEC 112
>gi|449528507|ref|XP_004171245.1| PREDICTED: arginine/serine-rich-splicing factor RSP40-like, partial
[Cucumis sativus]
Length = 73
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 67/73 (91%), Positives = 69/73 (94%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M+PIFCGNFEYDARQ DLERLF RYGKVDRVDMKSGFAFIYM+DERDAEDAIR LDR EF
Sbjct: 1 MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 60
Query: 114 GRKGRRLRVEWTK 126
GRKGRRLRVEWTK
Sbjct: 61 GRKGRRLRVEWTK 73
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 151 KTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQ---EDATRALD 203
K +F NF+ Y R DLER F YGK+ V ++ FAF+ E + EDA RALD
Sbjct: 2 KPIFCGNFE-YDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALD 56
>gi|440802526|gb|ELR23455.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 348
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 103/168 (61%), Gaps = 7/168 (4%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFG 114
R IF GN + ++ LF G + RVDMK G+AF+++ E A+R LD + G
Sbjct: 61 RAIFVGNLDPYTTTEEVRELFEGKGDIRRVDMKQGYAFVFL--ENGHHRAVRELDGSLHG 118
Query: 115 RKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEP 174
RK RLRVE + + I++ RR RPS+TLFV+NFD TR RDLE F P
Sbjct: 119 RK--RLRVELARGDGLIKKR---EDERRRDAARRPSETLFVVNFDAISTRARDLEDLFSP 173
Query: 175 YGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 222
YG+I+ + ++RNF FVQ+ E+ATRAL+A N +K+ DRVISVEY R
Sbjct: 174 YGRIVRIELKRNFGFVQFSAVEEATRALEALNGTKMVDRVISVEYVAR 221
>gi|224063959|ref|XP_002301321.1| predicted protein [Populus trichocarpa]
gi|222843047|gb|EEE80594.1| predicted protein [Populus trichocarpa]
Length = 79
Score = 126 bits (316), Expect = 2e-26, Method: Composition-based stats.
Identities = 62/73 (84%), Positives = 70/73 (95%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M+ IFCGN +YDARQSD+ERLFRRYG++DRVDMKSGFAF+YM+DERDAEDAIR LD+TEF
Sbjct: 1 MKAIFCGNLDYDARQSDVERLFRRYGRIDRVDMKSGFAFVYMEDERDAEDAIRRLDQTEF 60
Query: 114 GRKGRRLRVEWTK 126
GRKGRRLRVEWTK
Sbjct: 61 GRKGRRLRVEWTK 73
>gi|219123281|ref|XP_002181956.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406557|gb|EEC46496.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 361
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 101/191 (52%), Gaps = 24/191 (12%)
Query: 52 AMMRPIFCGNFEYDARQSDLERLFRR--------YGK-----VDRVDMKSGFAFIYMDD- 97
A +RP+F GN + ++ LF R G VDR+D+K G+ F+++ D
Sbjct: 29 AALRPVFLGNLVPNYSTDEVTTLFERPMLPAAAAEGAYRPIPVDRIDLKRGYCFVFLKDA 88
Query: 98 -----ERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKT 152
+ AE + ++ + LR E+ + + ++R RR N PS+T
Sbjct: 89 ATQADKEQAERFVSDINGMQIANVSNSLRAEFARGDGRVKRK---EDERR--KNIAPSET 143
Query: 153 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTD 212
LFV+NF T+ DL+ FEP+G+++ + ++RN+AFVQ++ +AT+A + TN KL
Sbjct: 144 LFVVNFHEETTKKEDLQMLFEPFGELVRIDLKRNYAFVQFKTIAEATKAKETTNGGKLDQ 203
Query: 213 RVISVEYAVRD 223
V++VEY R+
Sbjct: 204 SVLTVEYVARE 214
>gi|452824262|gb|EME31266.1| arginine/serine-rich splicing factor, putative [Galdieria
sulphuraria]
Length = 483
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 98/172 (56%), Gaps = 11/172 (6%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE-- 112
R ++ GN DA +++LF + + RVD+KSGFAF++++D AE AIR L+ T+
Sbjct: 57 RQLYVGNIPPDATVPQIQKLFEEFQPIARVDLKSGFAFVFLEDGEQAERAIRLLNGTKNE 116
Query: 113 --FGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLER 170
FG R L+VE+ K +++ P+++LFV NF P + R RDLER
Sbjct: 117 ELFG--FRTLKVEYAKDASLVKQREEERKR---RAERNPTESLFVTNF-PSYFRERDLER 170
Query: 171 HFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTD-RVISVEYAV 221
F+ +GK+++V I R++AFV + +DA+ A + + L D R + VEY
Sbjct: 171 IFDQFGKVVNVEIIRSYAFVTFASIKDASFAYEKMHHFTLDDGRELHVEYVT 222
>gi|224005402|ref|XP_002296352.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|209586384|gb|ACI65069.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 173
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 102/179 (56%), Gaps = 14/179 (7%)
Query: 54 MRPIFCGNFEYDARQSDLERLFR---RYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDR 110
MRPIF GN ++ SD+E +FR R +DRVDMK G+ F+++ +DA D + R
Sbjct: 1 MRPIFFGNLSHNCVASDVENIFRNPRRPLPIDRVDMKRGYCFVFL---KDAVDEVEK-RR 56
Query: 111 TEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLER 170
+ LR E+ + + I+R RR PS+TLFV+NF T+ DLE+
Sbjct: 57 IQNYVVDISLRAEFARGDGRIKRK---EDERRKKIT--PSETLFVVNFHEQTTKREDLEQ 111
Query: 171 HFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR--DDDDR 227
F+ YG+++ V ++RN+AFVQ++ ++A A D TN KL I+VE+ R +D DR
Sbjct: 112 LFQQYGELVRVDMKRNYAFVQFKTVDEAQAAKDGTNGGKLDQSEITVEFVARRMNDGDR 170
>gi|194693536|gb|ACF80852.1| unknown [Zea mays]
gi|194699312|gb|ACF83740.1| unknown [Zea mays]
gi|414588140|tpg|DAA38711.1| TPA: arginine/serine-rich splicing factor 2 variant 1 isoform 1
[Zea mays]
gi|414588141|tpg|DAA38712.1| TPA: hypothetical protein ZEAMMB73_778058 [Zea mays]
Length = 137
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/152 (49%), Positives = 89/152 (58%), Gaps = 20/152 (13%)
Query: 162 HTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
+TR D+ERHF P+G I SVRIR+NFAFVQ+E E+A +AL+AT+ + L DRVISVEYA
Sbjct: 2 NTRVSDIERHFTPFGNISSVRIRKNFAFVQFETMEEARKALEATHATTLLDRVISVEYAF 61
Query: 222 RDDDDRRNGH-SPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYG 280
RDD + + + SP R RR SP R R SPDYGR + SP YG
Sbjct: 62 RDDSEVSDRYGSPRRGGGYG-----RRGDSPVYRSRPSPDYGRPA----------SPVYG 106
Query: 281 RVRSPSPYR-RDRGSPDYGRNSSRSPYKKERA 311
P P R R R SP Y SRSP K RA
Sbjct: 107 SYDGPGPVRDRYRRSPAY---RSRSPPAKRRA 135
>gi|302835886|ref|XP_002949504.1| hypothetical protein VOLCADRAFT_80657 [Volvox carteri f.
nagariensis]
gi|300265331|gb|EFJ49523.1| hypothetical protein VOLCADRAFT_80657 [Volvox carteri f.
nagariensis]
Length = 139
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 79/121 (65%), Gaps = 11/121 (9%)
Query: 100 DAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFD 159
D ++A+R LDRTE+G K R+LRVEW + R+ +TRPSKTLFV+NFD
Sbjct: 6 DGDEAVRRLDRTEWGYKRRQLRVEWAQKTEADRKR-----------DTRPSKTLFVVNFD 54
Query: 160 PYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 219
T RD+ER+F +G++ V+I++N++FVQ+ E A RAL+ +N +++ R ++VE+
Sbjct: 55 VRRTSERDIERYFSRFGRLSRVQIKKNYSFVQFVDVESAVRALERSNGAQMDGRTLAVEF 114
Query: 220 A 220
Sbjct: 115 V 115
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 9/76 (11%)
Query: 55 RPIFCGNFEYDARQS---DLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRT 111
+ +F NF D R++ D+ER F R+G++ RV +K ++F+ D E A+R L+R+
Sbjct: 46 KTLFVVNF--DVRRTSERDIERYFSRFGRLSRVQIKKNYSFVQFV---DVESAVRALERS 100
Query: 112 EFGRK-GRRLRVEWTK 126
+ GR L VE+ +
Sbjct: 101 NGAQMDGRTLAVEFVQ 116
>gi|194698618|gb|ACF83393.1| unknown [Zea mays]
Length = 138
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 85/139 (61%), Gaps = 17/139 (12%)
Query: 163 TRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 222
TR D+ERHF P+G I SVRIR+NFAFV++E E+A +AL+AT+ + L DRVISVEYA R
Sbjct: 3 TRVSDIERHFAPFGNISSVRIRKNFAFVRFETLEEARKALEATHATMLLDRVISVEYAFR 62
Query: 223 DDDDRRNGH-SPDRNRDRSPDRGRRRSPSPYRRERGSPDYGR---------GSSRSPYR- 271
DDD+R + + SP R SP R R SPDYGR G SRSP R
Sbjct: 63 DDDERSDRYDSPRRGGGYGRRGD-----SPAYRSRPSPDYGRPASPVYGSYGRSRSPVRD 117
Query: 272 RERGSPDYGRVRSPSPYRR 290
R R SP Y R RSP RR
Sbjct: 118 RYRRSPAY-RSRSPPANRR 135
>gi|397573588|gb|EJK48771.1| hypothetical protein THAOC_32400 [Thalassiosira oceanica]
Length = 366
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 98/188 (52%), Gaps = 24/188 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRR-------YGK------VDRVDMKSGFAFIYMDDERD 100
+RP+F GN + + D+E +F G+ V+RVDMK G+ F+++ D +
Sbjct: 49 VRPVFLGNLSHACQAGDVEAMFTSPPTGGGDGGEAPAPIPVERVDMKRGYCFVFLKDAFN 108
Query: 101 ------AEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLF 154
AE ++ + + +R E+ + + I+R RR +P++TLF
Sbjct: 109 QAEKERAERFVQEICGMQVPNVSNAVRAEFARGDGRIKRK---EDERR--RQIQPNETLF 163
Query: 155 VINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRV 214
V+NF T+ DL+ F PYGKI+ + ++RN+AFVQ+E + A A +ATN KL
Sbjct: 164 VVNFHEETTKREDLDMLFSPYGKIVRIEMKRNYAFVQFETIDQAIAAKEATNGGKLDQSE 223
Query: 215 ISVEYAVR 222
++VEY R
Sbjct: 224 LTVEYVAR 231
>gi|413917963|gb|AFW57895.1| hypothetical protein ZEAMMB73_539697 [Zea mays]
gi|413917964|gb|AFW57896.1| hypothetical protein ZEAMMB73_539697 [Zea mays]
gi|413917965|gb|AFW57897.1| arginine/serine-rich splicing factor 1 variant 3 isoform 3 [Zea
mays]
gi|413917966|gb|AFW57898.1| hypothetical protein ZEAMMB73_539697 [Zea mays]
Length = 121
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/119 (52%), Positives = 76/119 (63%), Gaps = 15/119 (12%)
Query: 163 TRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 222
TR D+ERHF P+G I SVRIR+NFAFV++E E+A +AL+AT+ + L DRVISVEYA R
Sbjct: 3 TRVSDIERHFAPFGNISSVRIRKNFAFVRFETLEEARKALEATHATMLLDRVISVEYAFR 62
Query: 223 DDDDRRNGH-SPDRNRDRSPDRGRRRSPSPYRRERGSPDYGR---------GSSRSPYR 271
DDD+R + + SP R RR SP R R SPDYGR G SRSP R
Sbjct: 63 DDDERSDRYDSPRRGG-----GYGRRGDSPAYRSRPSPDYGRPASPVYGSYGRSRSPVR 116
>gi|449018009|dbj|BAM81411.1| similar to splicing factor RSp31 [Cyanidioschyzon merolae strain
10D]
Length = 301
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 88/174 (50%), Gaps = 21/174 (12%)
Query: 66 ARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAE---DAIRGLDRTEFGRKGRRLRV 122
A Q D+E+L YGKV R++MKS + F+Y ++ E AI L+ G + R L
Sbjct: 38 APQRDIEKLVEPYGKVQRIEMKSNYCFVYFSEDTAVEAYEHAIAALNGQRLGSQSRILTA 97
Query: 123 EWTK------------HERGI----RRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTR 166
EW + E+ + GG + S T SKTLFV+NFDP +R
Sbjct: 98 EWARGTAPASISRLQESEKTLGGEDSITGGDGACLENSVTT--SKTLFVVNFDPDEITSR 155
Query: 167 DLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
DL HF +G I + R++FAF+++ +DA RA + + + R +SVE++
Sbjct: 156 DLLIHFHRFGPIERIERRKHFAFIEFRSLDDAIRARSEMDGAYIGCRQVSVEFS 209
>gi|410929393|ref|XP_003978084.1| PREDICTED: uncharacterized protein LOC101079487 [Takifugu rubripes]
Length = 568
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 89/181 (49%), Gaps = 22/181 (12%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
IF GN D Q +L +F YG+V + FAF+++ E AE AIR L+ EF +
Sbjct: 9 IFVGNLALDTTQEELSAIFEPYGQVVSCSVLRQFAFVHLQGEGAAERAIRELNGREF--R 66
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYG 176
GR L VE RG RP +T+ +FV N T T DL++ F+ +G
Sbjct: 67 GRNLVVE---ESRG-----------RPLHSTK----VFVGNLSGMCT-TEDLQQLFQTFG 107
Query: 177 KIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA-VRDDDDRRNGHSPDR 235
K++ + +AFV E +EDA +A++A + + R +SVE + V+ G P
Sbjct: 108 KVLECDKVKGYAFVHMETKEDALQAIEALHGTSFKGRPLSVELSKVQPSKQTPTGKIPCV 167
Query: 236 N 236
N
Sbjct: 168 N 168
>gi|158254301|gb|AAI54223.1| Zgc:85696 [Danio rerio]
Length = 556
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 83/163 (50%), Gaps = 21/163 (12%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
+F GN D Q +L +F YG+V + FAF+++ E AE AIR L+ EF K
Sbjct: 9 LFVGNLALDTTQEELSAIFESYGQVVSCSVLRQFAFVHLQGEGAAERAIRELNGREF--K 66
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYG 176
GR L VE + RG RP +T+ +FV N T T DL+ F+ +G
Sbjct: 67 GRNLVVEES---RG-----------RPLHSTK----VFVGNLSSMCT-TEDLQELFQTFG 107
Query: 177 KIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 219
K++ + +AFV E +EDA +A++A + + R +SVE
Sbjct: 108 KVLECDKVKGYAFVHMENKEDALQAIEALHGTSFKGRPLSVEL 150
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
+F GN DL+ LF+ +GKV D G+AF++M+++ DA AI L T F K
Sbjct: 85 VFVGNLSSMCTTEDLQELFQTFGKVLECDKVKGYAFVHMENKEDALQAIEALHGTSF--K 142
Query: 117 GRRLRVEWTKHERGIRRPGG 136
GR L VE +K + + P G
Sbjct: 143 GRPLSVELSKVQPSKQTPTG 162
>gi|47086421|ref|NP_997973.1| RNA binding motif protein 14 [Danio rerio]
gi|46249892|gb|AAH68361.1| Zgc:85696 [Danio rerio]
gi|68085002|gb|AAH56604.2| Zgc:85696 [Danio rerio]
Length = 556
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 83/163 (50%), Gaps = 21/163 (12%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
+F GN D Q +L +F YG+V + FAF+++ E AE AIR L+ EF K
Sbjct: 9 LFVGNLALDTTQEELSAIFESYGQVVSCSVLRQFAFVHLQGEGAAERAIRELNGREF--K 66
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYG 176
GR L VE + RG RP +T+ +FV N T T DL+ F+ +G
Sbjct: 67 GRNLVVEES---RG-----------RPLHSTK----VFVGNLSSMCT-TEDLQELFQTFG 107
Query: 177 KIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 219
K++ + +AFV E +EDA +A++A + + R +SVE
Sbjct: 108 KVLECDKVKGYAFVHMENKEDALQAIEALHGTSFKGRPLSVEL 150
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
+F GN DL+ LF+ +GKV D G+AF++M+++ DA AI L T F K
Sbjct: 85 VFVGNLSSMCTTEDLQELFQTFGKVLECDKVKGYAFVHMENKEDALQAIEALHGTSF--K 142
Query: 117 GRRLRVEWTKHERGIRRPGG 136
GR L VE +K + + P G
Sbjct: 143 GRPLSVELSKVQPSKQTPTG 162
>gi|47212234|emb|CAF96201.1| unnamed protein product [Tetraodon nigroviridis]
Length = 565
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 90/184 (48%), Gaps = 22/184 (11%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
IF GN D Q +L +F YG+V + FAF+++ E AE AIR L+ EF +
Sbjct: 9 IFVGNLALDTTQEELSCIFEPYGQVVSCSVLRQFAFVHLQGEGSAERAIRELNGREF--R 66
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYG 176
GR L VE RG RP +T+ +FV N T T DL++ F+ +G
Sbjct: 67 GRNLVVE---ESRG-----------RPLHSTK----VFVGNLSGMCT-TEDLQQLFQTFG 107
Query: 177 KIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA-VRDDDDRRNGHSPDR 235
K++ + +AFV E +EDA +A++A + + R +SVE + V+ G P
Sbjct: 108 KVLECDKVKGYAFVHMENKEDALQAIEALHGTSFKGRPLSVELSKVQPSKQTPTGKIPCV 167
Query: 236 NRDR 239
N +
Sbjct: 168 NCGK 171
>gi|198419269|ref|XP_002128579.1| PREDICTED: similar to RNA binding motif protein 4B [Ciona
intestinalis]
Length = 336
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 82/167 (49%), Gaps = 21/167 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M IF G D ++S+LE LF+ YG++ + + F++M D DA+ AI GLD+T+
Sbjct: 1 MVKIFVGRLPEDVKKSELEELFKAYGEITDCSILKNYGFVHMADLNDAKKAIAGLDKTDL 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
KG + VE + +T + + +FV N P T++ D+ + F+
Sbjct: 61 --KGNSINVELS------------------TTKVQKASKIFVGNLPP-ETKSADIHKLFK 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
YG +I + +N+AFV + A A++ N ++ I V+ A
Sbjct: 100 KYGTVIECDVVKNYAFVHMGRENMARDAINGLNNTEFNGNKIGVQMA 146
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
IF GN + + +D+ +LF++YG V D+ +AF++M E A DAI GL+ TEF
Sbjct: 80 IFVGNLPPETKSADIHKLFKKYGTVIECDVVKNYAFVHMGRENMARDAINGLNNTEF--N 137
Query: 117 GRRLRVEWTKHERGIRRPGG 136
G ++ V+ + +R + GG
Sbjct: 138 GNKIGVQMARSQRNLDMHGG 157
>gi|432920249|ref|XP_004079910.1| PREDICTED: uncharacterized protein LOC101158309 [Oryzias latipes]
Length = 564
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 90/184 (48%), Gaps = 22/184 (11%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
+F GN D Q +L +F YG+V + FAF+++ E AE AIR L+ EF +
Sbjct: 9 LFVGNLALDTTQEELSAIFEPYGQVVSCSVLRQFAFVHLQGEGAAERAIRELNGREF--R 66
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYG 176
GR L VE RG RP +T+ +FV N T T DL++ F+ +G
Sbjct: 67 GRNLVVE---ESRG-----------RPLHSTK----VFVGNLSGMCT-TEDLQQLFQTFG 107
Query: 177 KIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA-VRDDDDRRNGHSPDR 235
K++ + +AFV E +EDA +A++A + + R +SVE + V+ G P
Sbjct: 108 KVLECDKVKGYAFVHMENKEDALQAIEALHGTSFKGRPLSVELSKVQPSKQAPTGKIPCV 167
Query: 236 NRDR 239
N +
Sbjct: 168 NCGK 171
>gi|111226838|ref|XP_001134599.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|90970796|gb|EAS66915.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 737
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 86/166 (51%), Gaps = 13/166 (7%)
Query: 56 PIFCGNFEYDARQSDLERLFRRYGK-VDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFG 114
IF GN D D+E LF+ Y K +++VD+K+G+AF+ + D + ++ L R EF
Sbjct: 141 TIFVGNLPRDTIVKDIENLFKNYVKSIEKVDIKNGYAFVIVS-TNDPDIVVKELHRKEFL 199
Query: 115 RKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEP 174
K +++ S + S +PS+ +F++N++ T T D+ P
Sbjct: 200 NKSLTVQI-----------AKSESKKKEESEEVKPSRAIFIVNYNVSKTTTNDIADWCSP 248
Query: 175 YGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
YG + V++ +NF FV++E + A++AL A ++ ++VEY
Sbjct: 249 YGNVNRVQMVKNFCFVEFETIDQASKALKALDLKSFDGHSLTVEYV 294
>gi|291190904|ref|NP_001167419.1| RNA-binding protein 4 [Salmo salar]
gi|223648750|gb|ACN11133.1| RNA-binding protein 4 [Salmo salar]
Length = 316
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 87/181 (48%), Gaps = 23/181 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M IF GN +S+L LF +YG+V D+ + F++M++E +A+ A+ L + E
Sbjct: 1 MVKIFVGNVNSSTTESELRTLFEKYGQVSDCDILKNYGFVHMNEEEEAQKAVAELHKHEL 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G R+ VE+ +T R + ++V N P T + F+
Sbjct: 61 --NGARITVEFA------------------TTKVRNATKIYVGNV-PEGTTAAKIRELFQ 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSP 233
P+GK++ I +NFAFV + + +A A+ N SK+ + I V ++ ++ RNG
Sbjct: 100 PFGKVVECDIVKNFAFVHMQRENEAYEAISKLNHSKMEGQKIFV--SISRNNQARNGRGD 157
Query: 234 D 234
D
Sbjct: 158 D 158
>gi|348520155|ref|XP_003447594.1| PREDICTED: hypothetical protein LOC100696008 [Oreochromis
niloticus]
Length = 575
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 89/181 (49%), Gaps = 22/181 (12%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
+F GN D Q +L +F YG+V + FAF+++ E AE AIR L+ EF +
Sbjct: 9 LFVGNLALDTTQEELSAIFEPYGQVVSCSVLRQFAFVHLQGEGAAERAIRELNGREF--R 66
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYG 176
GR L VE RG RP +T+ +FV N T T DL++ F+ +G
Sbjct: 67 GRNLVVE---ESRG-----------RPLHSTK----VFVGNLSGMCT-TEDLQQLFQTFG 107
Query: 177 KIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA-VRDDDDRRNGHSPDR 235
K++ + +AFV E +EDA +A++A + + R +SVE + V+ G P
Sbjct: 108 KVLECDKVKGYAFVHMENKEDALQAIEALHGTSFKGRPLSVELSKVQPSKQAPTGKIPCV 167
Query: 236 N 236
N
Sbjct: 168 N 168
>gi|348544591|ref|XP_003459764.1| PREDICTED: RNA-binding protein 4.1-like [Oreochromis niloticus]
Length = 419
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 23/168 (13%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M IF GN D +L LF +YGK+ + F F++MDD+ +AE+AIR L + E
Sbjct: 1 MVKIFIGNLSPDTTSDELRSLFSQYGKIAECSIVKNFGFVHMDDKTEAEEAIRNLHQYEL 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G+ + VE ++ + +R S L V N ++L FE
Sbjct: 61 --NGQPMNVELSRGK------------------SRGSTKLHVGNIA---CTNQELRAKFE 97
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
+G ++ I +N+AFV E EDA A++ + + +++SV+ +
Sbjct: 98 EFGTVLECDIVKNYAFVHMERMEDAMEAINQLDNTAFKGKLMSVKLST 145
>gi|281209187|gb|EFA83362.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 503
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 94/177 (53%), Gaps = 15/177 (8%)
Query: 57 IFCGNFEYDARQSDLERL---FRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
+F GN + D+E+L F + +D+K+G+AF+++ D+ DA+ I G+ +T +
Sbjct: 61 VFIGNLPHGLDNYDIEQLCNPFISRSSILTIDLKNGYAFVFLHDKDDADKLIDGMHKTNY 120
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
+GR L V+ H RG R + +P T+F+++++ T + R +
Sbjct: 121 --RGRTLTVQ---HARGENRKLLNREKK-----AKPCPTIFLVHYNVDTTTEESISRLCK 170
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNG 230
P+G I+ + +R+ F FV++ E AT+AL+A + ++ + VE+ + + RNG
Sbjct: 171 PFGDIVRIEMRKTFCFVEFTDAEQATKALEALHKKEIDGSKLVVEFVTGESN--RNG 225
>gi|330801718|ref|XP_003288871.1| hypothetical protein DICPUDRAFT_98159 [Dictyostelium purpureum]
gi|325081064|gb|EGC34594.1| hypothetical protein DICPUDRAFT_98159 [Dictyostelium purpureum]
Length = 467
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 94/180 (52%), Gaps = 14/180 (7%)
Query: 43 SQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRY-GKVDRVDMKSGFAFIYMDDERDA 101
+QL + + + +F GN D D+E +FR + K+ ++D+K+G+AF+ ++ E D+
Sbjct: 58 AQLENDDYHSNNQTVFVGNLPKDVTFKDIENIFRDHVKKIGKIDIKNGYAFVVVNKE-DS 116
Query: 102 EDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPY 161
+ ++ LD EF +K +L ++ K G + + RP +F++N++
Sbjct: 117 DRCVKELDGKEFFKK--QLTIQLAK----------GECKKEGNKPRRPCPAIFIVNYNVL 164
Query: 162 HTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
T + + +P+G I +++ +N+ FV++ +AT+AL+ N + ++VEY
Sbjct: 165 KTTINLIIKLCQPHGVINRIQMVKNYCFVEFSSTIEATKALNYLNYKIVDGHTLTVEYVC 224
>gi|241159531|ref|XP_002408582.1| alternative splicing factor ASF/SF2, putative [Ixodes scapularis]
gi|215494365|gb|EEC04006.1| alternative splicing factor ASF/SF2, putative [Ixodes scapularis]
Length = 339
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 83/171 (48%), Gaps = 14/171 (8%)
Query: 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 112
M +F G YD R+ DLE+ F+ YG++ V +K+G+ F+ DD RDAEDA+ L+ +
Sbjct: 1 MTTRVFVGRLNYDVRERDLEKFFKGYGRIGEVLLKNGYGFVEFDDYRDAEDAVHDLNGKK 60
Query: 113 FGRKGRRLRVEWTKHERGIRRP-----GGGSSARRPSTNTRPSKTLFVINFDPYHTRTRD 167
G R+ VE RGIRR GG SS+RR +R L V N +D
Sbjct: 61 L--MGERISVELA---RGIRRGPGTGYGGASSSRRYGPPSRTEYQLLVENLSS-SVSWQD 114
Query: 168 LERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
L+ G++ + ++RRN V++ D AL N L R I
Sbjct: 115 LKDFMRQAGEVTYTDAHKLRRNEGVVEFATYSDMKNALIKLNHMDLDGRRI 165
>gi|198417315|ref|XP_002119186.1| PREDICTED: similar to RNA binding motif protein 4B [Ciona
intestinalis]
Length = 157
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 82/167 (49%), Gaps = 21/167 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M IF G D ++S+LE LF+ YG++ + + F++M D DA+ AI GLD+T+
Sbjct: 1 MVKIFVGRLPEDVKKSELEELFKAYGEITDCSILKNYGFVHMADLNDAKKAIAGLDKTDL 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
KG + VE + +T + + +FV N P T++ D+ + F+
Sbjct: 61 --KGNSINVELS------------------TTKVQKASKIFVGNLPP-ETKSADIHKLFK 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
YG +I + +N+AFV + A A++ N ++ I V+ A
Sbjct: 100 KYGTVIECDVVKNYAFVHMGRENMARDAINGLNNTEFNGNKIGVQMA 146
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
IF GN + + +D+ +LF++YG V D+ +AF++M E A DAI GL+ TEF
Sbjct: 80 IFVGNLPPETKSADIHKLFKKYGTVIECDVVKNYAFVHMGRENMARDAINGLNNTEF--N 137
Query: 117 GRRLRVEWTKHERGIRRPGG 136
G ++ V+ + +R + GG
Sbjct: 138 GNKIGVQMARSQRNLDMHGG 157
>gi|348544593|ref|XP_003459765.1| PREDICTED: RNA-binding protein 4.1-like [Oreochromis niloticus]
Length = 380
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 21/168 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M IF GN +A +L LF +YGKV D+ + F++M + +AE+AI+ L + +
Sbjct: 1 MVKIFIGNLACNATAEELRELFEKYGKVTECDIVKNYGFVHMSNMSEAEEAIKNLHQHQL 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G R+ VE +K RP + T+ L V N T + L FE
Sbjct: 61 --HGWRMNVEMSK--------------GRPKSTTK----LHVSNLGEGVT-SEVLRARFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
+G ++ I +++AFV E EDA A+ + + +++SV+ +
Sbjct: 100 EFGPVVECDIVKDYAFVHMERVEDAMEAISNLDNTAFKGKLMSVQLST 147
>gi|392344877|ref|XP_003749100.1| PREDICTED: RNA-binding protein 14-like [Rattus norvegicus]
Length = 404
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 21/149 (14%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 61 --HGVNINVEASKNK------------------SKASTKLHVGNISPTCTN-QELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRAL 202
YG +I I +++AFV E EDA A+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAI 128
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
+ GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
>gi|47209605|emb|CAF93000.1| unnamed protein product [Tetraodon nigroviridis]
Length = 391
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 23/168 (13%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M IF GN + ++ LF +YGK+ + F F++MDD+ +A++AIR L + E
Sbjct: 1 MVKIFIGNLASETTSDEIRSLFSQYGKISECTIVKNFGFVHMDDKAEADEAIRNLHQYEL 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G+ + VE ++ + +R S L V N ++L FE
Sbjct: 61 --NGQPMNVELSRGK------------------SRGSTKLHVGNIA---CTNQELRAKFE 97
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
+G ++ I +N+AFV E EDA A++ + + +++SV+ +
Sbjct: 98 EFGAVVECDIVKNYAFVHMERMEDAMDAINQLDNTAFKGKLMSVKLST 145
>gi|410906771|ref|XP_003966865.1| PREDICTED: RNA-binding protein 4.1-like [Takifugu rubripes]
Length = 416
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 79/168 (47%), Gaps = 23/168 (13%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M IF GN + ++ LF +YGK+ + F F++MDD+ +A++AIR L + E
Sbjct: 1 MVKIFIGNLASETTSDEIRSLFSQYGKIAECTIVKNFGFVHMDDKAEADEAIRNLHQYEL 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G+ + VE ++ +R S L V N ++L FE
Sbjct: 61 --NGQPMNVELSR------------------GKSRGSTKLHVGNIA---CTNQELRAKFE 97
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
+G ++ I +N+AFV E EDA A++ + + +++SV+ +
Sbjct: 98 EFGAVLECDIVKNYAFVHMERMEDAMDAINQLDNTAFKGKLMSVKLST 145
>gi|410906769|ref|XP_003966864.1| PREDICTED: RNA-binding protein 4.1-like [Takifugu rubripes]
Length = 379
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 82/169 (48%), Gaps = 23/169 (13%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M IF GN A +L LF +YGKV D+ + F++M + +AE+AI+ L++ +
Sbjct: 1 MVKIFIGNLTCTATPQELRELFEKYGKVTECDIVKNYGFVHMSNVSEAEEAIKNLNQHQL 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERH-F 172
G R+ VE +K RP + T+ L V N T D+ R F
Sbjct: 61 --HGWRMNVELSK--------------GRPKSTTK----LHVSNLG--EGVTSDVLRARF 98
Query: 173 EPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
+ +G ++ I +++AFV E EDA A++ + + +++SV+ +
Sbjct: 99 QEFGPVVECDIVKDYAFVHMERMEDAMEAIEKMDNTAFKGKLMSVQLST 147
>gi|325192592|emb|CCA27020.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 347
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 88/184 (47%), Gaps = 24/184 (13%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M I+ GN D + DLE F ++G+++ +K G+ F+ D+ A +A+R +D TE
Sbjct: 1 MSKIYVGNLTSDFDERDLEAGFEKFGRIESCAVKRGYGFVNFRDDHSAAEALREMDDTEL 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARR-----PSTNTRPSKTLFVINFDPYHTRTRDL 168
KGRR+RV + G S+ RR N S+ LFV N P + R R+L
Sbjct: 61 --KGRRIRVAYAN-------SGSYSTTRRERPEQARENGPVSRNLFVANIPP-NVRLREL 110
Query: 169 ERHFEPYGKIISVRIRRNF-------AFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
E FE YGK+ +V+I AFV + + +A A A + L + + +Y
Sbjct: 111 EEFFERYGKVQNVKILPQVKGNVTMSAFVDFSTEAEAESAHTAELV--LDGKCLRTDYNF 168
Query: 222 RDDD 225
R D
Sbjct: 169 RKGD 172
>gi|297267337|ref|XP_001109416.2| PREDICTED: RNA-binding protein 4 isoform 5 [Macaca mulatta]
Length = 693
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 330 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 389
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 390 --HGVNINVEASKNK------------------SKTSTKLHVGNISPTCT-NKELRAKFE 428
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 429 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 473
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 14/96 (14%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
IF GN +L LF R G+V D+ +AF++M+ E DA+ AI L+ E K
Sbjct: 49 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEV--K 106
Query: 117 GRRLRVEW-TKHER---GI--------RRPGGGSSA 140
G+R+ VE TK ++ G+ ++PG G +A
Sbjct: 107 GKRINVELSTKGQKKGPGLAVQSGDKTKKPGAGDTA 142
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 24/139 (17%)
Query: 86 MKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPST 145
MK FAF++M + A AI L E R GR L VE + RP
Sbjct: 1 MKIFFAFVHMRENAGALRAIEALHGHEL-RPGRALVVE-------MSRP----------- 41
Query: 146 NTRPSKT--LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALD 203
RP T +FV N T +++L FE G++I + +++AFV E + DA A+
Sbjct: 42 --RPLNTWKIFVGNVSAACT-SQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIA 98
Query: 204 ATNMSKLTDRVISVEYAVR 222
N ++ + I+VE + +
Sbjct: 99 QLNGKEVKGKRINVELSTK 117
>gi|41054387|ref|NP_955999.1| RNA-binding protein 4.1 [Danio rerio]
gi|28277979|gb|AAH46057.1| RNA binding motif protein 4.1 [Danio rerio]
Length = 419
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M IF GN + ++ LF +YGK+ D+ F F++MD + +A++AI+ L +
Sbjct: 1 MVKIFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKSEADEAIQNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K +P T+T+P V N T ++L FE
Sbjct: 59 MLNGMAMNVEMSK--------------GKPKTSTKPH----VGNISSSCT-NQELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG ++ I +++AFV E EDA A+ + + +++SV+
Sbjct: 100 EYGPVVECDIVKDYAFVHMERVEDAMEAISGLDNTAFQGKLMSVK 144
>gi|432888898|ref|XP_004075077.1| PREDICTED: RNA-binding protein 4.1-like [Oryzias latipes]
Length = 417
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 97/239 (40%), Gaps = 54/239 (22%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M IF GN + +L LF +YGK+ + F F++MD + +AE+AIR L + E
Sbjct: 1 MVKIFIGNLAPETTTEELRSLFSQYGKIAECSIVKNFGFVHMDSKAEAEEAIRNLHQYEL 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
+ + VE ++ + +R S L V N ++L FE
Sbjct: 61 --NAQPMNVELSRGK------------------SRGSTKLHVGNIA---CTNQELRAKFE 97
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISV---------------- 217
+G ++ I +N+AFV E EDA A++ + + +++SV
Sbjct: 98 EFGAVLECDIVKNYAFVHMERMEDAMEAINKLDNTAFKGKLMSVKLSTSRLRTAPGMGDR 157
Query: 218 --------------EYAVRDDDDRRNGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYG 262
E + + +RNG P D S GR +S + Y G PDYG
Sbjct: 158 SGCYRCGQEGHWSKECPLDQNGFQRNGSEPKSEYDASGFGGREQSMA-YPDFGGEPDYG 215
>gi|62511030|sp|Q6IQ97.1|RBM41_DANRE RecName: Full=RNA-binding protein 4.1; AltName: Full=RNA-binding
motif protein 4.1
gi|47940417|gb|AAH71513.1| RNA binding motif protein 4.1 [Danio rerio]
gi|160774000|gb|AAI55176.1| RNA binding motif protein 4.1 [Danio rerio]
Length = 419
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M IF GN + ++ LF +YGK+ D+ F F++MD + +A++AI+ L +
Sbjct: 1 MVKIFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKSEADEAIQNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K +P T+T+ L V N T ++L FE
Sbjct: 59 MLNGMAMNVEMSK--------------GKPKTSTK----LHVGNISSSCT-NQELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG ++ I +++AFV E EDA A+ + + +++SV+
Sbjct: 100 EYGPVVECDIVKDYAFVHMERVEDAMEAISGLDNTAFQGKLMSVK 144
>gi|297741109|emb|CBI31840.3| unnamed protein product [Vitis vinifera]
Length = 50
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/47 (76%), Positives = 40/47 (85%)
Query: 45 LSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFA 91
L + F MRPIFCGNF+YDARQSDLERLFRRYGKVDRVDMK+G +
Sbjct: 4 LDLENFPVKMRPIFCGNFDYDARQSDLERLFRRYGKVDRVDMKTGLS 50
>gi|45595611|gb|AAH67187.1| Rbm4.2 protein [Danio rerio]
Length = 384
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 21/168 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M IF GN + DL LF +G V D+ + F++MD +++AE AIR L E
Sbjct: 1 MVKIFIGNLSPTSTADDLRSLFSEFGIVKECDVLKNYGFVHMDSKKEAEAAIRKLHHYEL 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
KG+ + VE +K R S L V N T ++L FE
Sbjct: 61 --KGQAINVELSK------------------GKPRGSTKLHVSNISSGCT-NQELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
YG ++ I +++AFV E +DA A+ + ++I V+ +
Sbjct: 100 EYGPVVECDIVKDYAFVHMERMDDAMEAISGLENTTFQGKLIKVQLST 147
>gi|41054431|ref|NP_955971.1| RNA binding motif protein 4 like [Danio rerio]
gi|27881945|gb|AAH44503.1| RNA binding motif protein 4.2 [Danio rerio]
gi|157423277|gb|AAI53458.1| Rbm4.2 protein [Danio rerio]
gi|182890716|gb|AAI65179.1| Rbm4.2 protein [Danio rerio]
Length = 385
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 21/168 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M IF GN + DL LF +G V D+ + F++MD +++AE AIR L E
Sbjct: 1 MVKIFIGNLSPTSTADDLRSLFSEFGIVKECDVLKNYGFVHMDSKKEAEAAIRKLHHYEL 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
KG+ + VE +K R S L V N T ++L FE
Sbjct: 61 --KGQAINVELSK------------------GKPRGSTKLHVSNISSGCT-NQELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
YG ++ I +++AFV E +DA A+ + ++I V+ +
Sbjct: 100 EYGPVVECDIVKDYAFVHMERMDDAMEAISGLENTTFQGKLIKVQLST 147
>gi|2078529|gb|AAC51293.1| Hlark [Homo sapiens]
Length = 366
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 21/167 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKTSTKLHVGNISPTCTN-KELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
YG +I I +++AFV E EDA A+ + ++ + + V+ +
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
>gi|426252100|ref|XP_004019756.1| PREDICTED: RNA-binding protein 4 isoform 1 [Ovis aries]
Length = 361
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKTSTKLHVGNISPTCT-NKELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>gi|45387723|ref|NP_991217.1| uncharacterized protein LOC402952 [Danio rerio]
gi|41351185|gb|AAH65633.1| Zgc:77262 [Danio rerio]
Length = 331
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 21/164 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M IF GN + +L LF +YG V D+ + F++MD+E A+ A+ L + E
Sbjct: 1 MVKIFVGNVASATTEDELRALFEKYGAVSDCDILKNYGFVHMDEEEAAQKAVSALHKHEV 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G R+ VE+ +T R + ++V N P ++ F+
Sbjct: 61 --NGSRITVEYA------------------TTKVRNATKIYVGNV-PEGVAAAKIKELFQ 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
P+GK++ I +N+AFV + + +A A+ N SK+ + I V
Sbjct: 100 PFGKVVECDIVKNYAFVHMQRENEALDAIAKLNHSKVDGQKIFV 143
>gi|282165770|ref|NP_001163955.1| RNA binding motif protein 4 [Rattus norvegicus]
gi|149061994|gb|EDM12417.1| rCG48334, isoform CRA_b [Rattus norvegicus]
Length = 365
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>gi|116004239|ref|NP_001070478.1| RNA-binding protein 4 [Bos taurus]
gi|91207336|sp|Q3MHX3.1|RBM4_BOVIN RecName: Full=RNA-binding protein 4; AltName: Full=RNA-binding
motif protein 4; AltName: Full=RNA-binding motif protein
4a
gi|75775098|gb|AAI04571.1| RNA binding motif protein 4 [Bos taurus]
gi|146231708|gb|ABQ12929.1| RNA binding motif protein 4 [Bos taurus]
gi|296471486|tpg|DAA13601.1| TPA: RNA-binding protein 4 [Bos taurus]
gi|440899389|gb|ELR50692.1| RNA-binding protein 4 [Bos grunniens mutus]
Length = 362
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKTSTKLHVGNISPTCT-NKELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>gi|348565067|ref|XP_003468325.1| PREDICTED: RNA-binding protein 4-like [Cavia porcellus]
Length = 365
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NKELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>gi|47209606|emb|CAF93001.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1197
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 23/168 (13%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M IF GN A +L LF +YGKV D+ + F++M + +AE+AI+ L++ +
Sbjct: 820 MVKIFIGNLTCTATPQELRELFEKYGKVTECDIVKNYGFVHMSNMSEAEEAIKNLNQHQL 879
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERH-F 172
G R+ VE +K RP + T+ L V N T D+ R F
Sbjct: 880 --HGWRMNVELSK--------------GRPKSTTK----LHVSNLG--EGVTSDVLRARF 917
Query: 173 EPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
E +G ++ I +++AFV E EDA A++ + + +++SV+ +
Sbjct: 918 EEFGPVVECDIVKDYAFVHMERMEDAMEAIEKMDNTAFKGKLMSVQLS 965
>gi|432091077|gb|ELK24289.1| RNA-binding protein 4 [Myotis davidii]
Length = 382
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRTLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NKELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>gi|120577684|gb|AAI30257.1| RNA binding motif protein 4 [Mus musculus]
Length = 361
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>gi|354496140|ref|XP_003510185.1| PREDICTED: RNA-binding protein 4 [Cricetulus griseus]
gi|344250268|gb|EGW06372.1| RNA-binding protein 4 [Cricetulus griseus]
Length = 360
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>gi|431910217|gb|ELK13290.1| RNA-binding protein 4 [Pteropus alecto]
Length = 365
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKTSTKLHVGNISPTCT-NKELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>gi|296218877|ref|XP_002755613.1| PREDICTED: RNA-binding protein 4 [Callithrix jacchus]
gi|403301167|ref|XP_003941270.1| PREDICTED: RNA-binding protein 4 [Saimiri boliviensis boliviensis]
Length = 364
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 21/149 (14%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKTSTKLHVGNISPTCT-NKELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRAL 202
YG +I I +++AFV E EDA A+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAI 128
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
+ GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF +
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF--Q 137
Query: 117 GRRLRVEWT 125
G+R+ V+ +
Sbjct: 138 GKRMHVQLS 146
>gi|93277122|ref|NP_002887.2| RNA-binding protein 4 isoform 1 [Homo sapiens]
gi|350539417|ref|NP_001233570.1| RNA-binding protein 4 [Pan troglodytes]
gi|332249626|ref|XP_003273959.1| PREDICTED: RNA-binding protein 4 isoform 2 [Nomascus leucogenys]
gi|397517069|ref|XP_003828742.1| PREDICTED: RNA-binding protein 4 isoform 1 [Pan paniscus]
gi|402892712|ref|XP_003909553.1| PREDICTED: RNA-binding protein 4 [Papio anubis]
gi|426369345|ref|XP_004051653.1| PREDICTED: RNA-binding protein 4 isoform 1 [Gorilla gorilla
gorilla]
gi|62511089|sp|Q9BWF3.1|RBM4_HUMAN RecName: Full=RNA-binding protein 4; AltName: Full=Lark homolog;
Short=hLark; AltName: Full=RNA-binding motif protein 4;
AltName: Full=RNA-binding motif protein 4a
gi|75077302|sp|Q4R979.1|RBM4_MACFA RecName: Full=RNA-binding protein 4; AltName: Full=RNA-binding
motif protein 4
gi|12653083|gb|AAH00307.1| RNA binding motif protein 4 [Homo sapiens]
gi|21618467|gb|AAH32735.1| RNA binding motif protein 4 [Homo sapiens]
gi|67967719|dbj|BAE00342.1| unnamed protein product [Macaca fascicularis]
gi|167774193|gb|ABZ92531.1| RNA binding motif protein 4 [synthetic construct]
gi|193783581|dbj|BAG53492.1| unnamed protein product [Homo sapiens]
gi|261859218|dbj|BAI46131.1| RNA binding motif protein 14 [synthetic construct]
gi|343958742|dbj|BAK63226.1| RNA binding motif protein 4 [Pan troglodytes]
gi|355566266|gb|EHH22645.1| RNA-binding motif protein 4 [Macaca mulatta]
gi|380784029|gb|AFE63890.1| RNA-binding protein 4 isoform 1 [Macaca mulatta]
gi|383409025|gb|AFH27726.1| RNA-binding protein 4 isoform 1 [Macaca mulatta]
gi|384942564|gb|AFI34887.1| RNA-binding protein 4 isoform 1 [Macaca mulatta]
gi|410222926|gb|JAA08682.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410222932|gb|JAA08685.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410222940|gb|JAA08689.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410254448|gb|JAA15191.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410254452|gb|JAA15193.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410295006|gb|JAA26103.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352741|gb|JAA42974.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352747|gb|JAA42977.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352751|gb|JAA42979.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352753|gb|JAA42980.1| RNA binding motif protein 4 [Pan troglodytes]
Length = 364
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 21/149 (14%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKTSTKLHVGNISPTCT-NKELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRAL 202
YG +I I +++AFV E EDA A+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAI 128
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
+ GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF +
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF--Q 137
Query: 117 GRRLRVEWT 125
G+R+ V+ +
Sbjct: 138 GKRMHVQLS 146
>gi|291385477|ref|XP_002709280.1| PREDICTED: RNA binding motif protein 4B-like [Oryctolagus
cuniculus]
Length = 365
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 21/149 (14%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKTSTKLHVGNISPTCT-NKELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRAL 202
YG +I I +++AFV E EDA A+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAI 128
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
+ GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF +
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF--Q 137
Query: 117 GRRLRVEWT 125
G+R+ V+ +
Sbjct: 138 GKRMHVQLS 146
>gi|158259071|dbj|BAF85494.1| unnamed protein product [Homo sapiens]
Length = 364
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 21/149 (14%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKTSTKLHVGNISPACT-NKELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRAL 202
YG +I I +++AFV E EDA A+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAI 128
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
+ GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF +
Sbjct: 80 LHVGNISPACTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF--Q 137
Query: 117 GRRLRVEWT 125
G+R+ V+ +
Sbjct: 138 GKRMHVQLS 146
>gi|149725614|ref|XP_001496788.1| PREDICTED: RNA-binding protein 4 isoform 1 [Equus caballus]
gi|338712238|ref|XP_003362679.1| PREDICTED: RNA-binding protein 4 isoform 2 [Equus caballus]
Length = 361
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKTSTKLHVGNISPTCT-NKELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>gi|395851691|ref|XP_003798386.1| PREDICTED: RNA-binding protein 4 [Otolemur garnettii]
Length = 365
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 21/149 (14%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKTSTKLHVGNISPTCTN-KELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRAL 202
YG +I I +++AFV E EDA A+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAI 128
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
+ GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF +
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF--Q 137
Query: 117 GRRLRVEWT 125
G+R+ V+ +
Sbjct: 138 GKRMHVQLS 146
>gi|73982920|ref|XP_852303.1| PREDICTED: RNA-binding protein 4 isoform 1 [Canis lupus familiaris]
gi|301784859|ref|XP_002927840.1| PREDICTED: RNA-binding protein 4-like isoform 1 [Ailuropoda
melanoleuca]
gi|301784861|ref|XP_002927841.1| PREDICTED: RNA-binding protein 4-like isoform 2 [Ailuropoda
melanoleuca]
gi|410974610|ref|XP_003993736.1| PREDICTED: RNA-binding protein 4 [Felis catus]
gi|281346284|gb|EFB21868.1| hypothetical protein PANDA_017684 [Ailuropoda melanoleuca]
Length = 365
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKTSTKLHVGNISPTCT-NKELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>gi|354496142|ref|XP_003510186.1| PREDICTED: RNA-binding protein 4B [Cricetulus griseus]
gi|344250269|gb|EGW06373.1| RNA-binding protein 4B [Cricetulus griseus]
Length = 357
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>gi|351710884|gb|EHB13803.1| RNA-binding protein 4 [Heterocephalus glaber]
Length = 318
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NKELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>gi|86262144|ref|NP_033058.2| RNA-binding protein 4 [Mus musculus]
gi|62511057|sp|Q8C7Q4.1|RBM4_MOUSE RecName: Full=RNA-binding protein 4; AltName: Full=Lark homolog;
Short=mLark; AltName: Full=RNA-binding motif protein 4;
AltName: Full=RNA-binding motif protein 4a
gi|26340398|dbj|BAC33862.1| unnamed protein product [Mus musculus]
gi|148701113|gb|EDL33060.1| mCG8382, isoform CRA_a [Mus musculus]
gi|219520483|gb|AAI44950.1| RNA binding motif protein 4 [Mus musculus]
Length = 361
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>gi|57099639|ref|XP_533216.1| PREDICTED: RNA-binding protein 4B isoform 1 [Canis lupus
familiaris]
Length = 359
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>gi|301784857|ref|XP_002927839.1| PREDICTED: RNA-binding protein 4B-like [Ailuropoda melanoleuca]
gi|281346283|gb|EFB21867.1| hypothetical protein PANDA_017683 [Ailuropoda melanoleuca]
Length = 359
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>gi|119594961|gb|EAW74555.1| RNA binding motif protein 4, isoform CRA_b [Homo sapiens]
Length = 315
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 21/149 (14%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKTSTKLHVGNISPTCTN-KELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRAL 202
YG +I I +++AFV E EDA A+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAI 128
>gi|149725616|ref|XP_001496839.1| PREDICTED: RNA-binding protein 4B-like [Equus caballus]
Length = 359
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>gi|431910216|gb|ELK13289.1| RNA-binding protein 4B [Pteropus alecto]
Length = 359
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>gi|444510189|gb|ELV09524.1| RNA-binding protein 4B [Tupaia chinensis]
Length = 357
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>gi|426252104|ref|XP_004019758.1| PREDICTED: RNA-binding protein 4B isoform 1 [Ovis aries]
Length = 365
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>gi|114052178|ref|NP_001039393.1| RNA-binding protein 4B [Bos taurus]
gi|86438058|gb|AAI12498.1| RNA binding motif protein 4B [Bos taurus]
gi|296471585|tpg|DAA13700.1| TPA: RNA binding motif protein 4B [Bos taurus]
Length = 359
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>gi|178056236|ref|NP_001116660.1| RNA-binding protein 4B [Sus scrofa]
gi|122131878|sp|Q06AT9.1|RBM4B_PIG RecName: Full=RNA-binding protein 4B; AltName: Full=RNA-binding
motif protein 30; AltName: Full=RNA-binding motif
protein 4B; AltName: Full=RNA-binding protein 30
gi|115394774|gb|ABI97181.1| RBM30 [Sus scrofa]
Length = 359
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>gi|395544458|ref|XP_003774127.1| PREDICTED: RNA-binding protein 4 [Sarcophilus harrisii]
Length = 364
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T +L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCTNL-ELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>gi|149491652|ref|XP_001512914.1| PREDICTED: RNA-binding protein 4B-like isoform 1 [Ornithorhynchus
anatinus]
Length = 365
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T +L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCTNM-ELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>gi|2078531|gb|AAC53171.1| Mlark [Mus musculus]
Length = 367
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 21/149 (14%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCTN-QELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRAL 202
YG +I I +++AFV E EDA A+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAI 128
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 60 GNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRR 119
GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF +G+R
Sbjct: 83 GNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF--QGKR 140
Query: 120 LRVE 123
+ V+
Sbjct: 141 MHVQ 144
>gi|380817026|gb|AFE80387.1| RNA-binding protein 4B [Macaca mulatta]
gi|384949730|gb|AFI38470.1| RNA-binding protein 4B [Macaca mulatta]
gi|410254450|gb|JAA15192.1| RNA binding motif protein 4B [Pan troglodytes]
gi|410295008|gb|JAA26104.1| RNA binding motif protein 4B [Pan troglodytes]
gi|410352743|gb|JAA42975.1| RNA binding motif protein 4B [Pan troglodytes]
Length = 359
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKTSTKLHVGNISPTCT-NKELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>gi|119594960|gb|EAW74554.1| RNA binding motif protein 4, isoform CRA_a [Homo sapiens]
Length = 326
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 21/149 (14%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 12 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 69
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 70 KLHGVNINVEASKNK------------------SKTSTKLHVGNISPTCT-NKELRAKFE 110
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRAL 202
YG +I I +++AFV E EDA A+
Sbjct: 111 EYGPVIECDIVKDYAFVHMERAEDAVEAI 139
>gi|410222930|gb|JAA08684.1| RNA binding motif protein 4B [Pan troglodytes]
Length = 359
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 21/149 (14%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKTSTKLHVGNISPTCT-NKELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRAL 202
YG +I I +++AFV E EDA A+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAI 128
>gi|126723790|ref|NP_001075548.1| RNA-binding protein 4 [Oryctolagus cuniculus]
gi|62511088|sp|Q9BDY9.1|RBM4_RABIT RecName: Full=RNA-binding protein 4; AltName: Full=Lark homolog;
AltName: Full=RNA-binding motif protein 4
gi|13182931|gb|AAK14991.1|AF233063_1 RNA-binding protein lark [Oryctolagus cuniculus]
Length = 359
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>gi|403301169|ref|XP_003941271.1| PREDICTED: RNA-binding protein 4B [Saimiri boliviensis boliviensis]
Length = 359
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRTKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>gi|34495359|gb|AAQ73500.1| zinc responsive protein ZD7 [Rattus norvegicus]
Length = 357
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>gi|55926188|ref|NP_001007015.2| RNA-binding protein 4B [Rattus norvegicus]
gi|62510948|sp|Q64LC9.2|RBM4B_RAT RecName: Full=RNA-binding protein 4B; AltName: Full=RNA-binding
motif protein 30; AltName: Full=RNA-binding motif
protein 4B; AltName: Full=RNA-binding protein 30;
AltName: Full=Zinc-responsive protein ZD7
gi|55562771|gb|AAH86416.1| RNA binding motif protein 4B [Rattus norvegicus]
gi|149061999|gb|EDM12422.1| rCG48244, isoform CRA_a [Rattus norvegicus]
gi|149062000|gb|EDM12423.1| rCG48244, isoform CRA_a [Rattus norvegicus]
Length = 357
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>gi|27754120|ref|NP_079993.2| RNA-binding protein 4B [Mus musculus]
gi|62511125|sp|Q8VE92.1|RBM4B_MOUSE RecName: Full=RNA-binding protein 4B; AltName: Full=RNA-binding
motif protein 30; AltName: Full=RNA-binding motif
protein 4B; AltName: Full=RNA-binding protein 30
gi|18044496|gb|AAH19488.1| RNA binding motif protein 4B [Mus musculus]
gi|148701119|gb|EDL33066.1| mCG8380, isoform CRA_a [Mus musculus]
gi|148701120|gb|EDL33067.1| mCG8380, isoform CRA_a [Mus musculus]
Length = 357
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>gi|348565071|ref|XP_003468327.1| PREDICTED: RNA-binding protein 4B-like [Cavia porcellus]
Length = 358
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>gi|432091076|gb|ELK24288.1| RNA-binding protein 4B [Myotis davidii]
Length = 357
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>gi|383422057|gb|AFH34242.1| RNA-binding protein 4B [Macaca mulatta]
Length = 359
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKTSTKLHVGNISPTCT-NKELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>gi|13899354|ref|NP_113680.1| RNA-binding protein 4B [Homo sapiens]
gi|109105261|ref|XP_001109453.1| PREDICTED: RNA-binding protein 4B-like [Macaca mulatta]
gi|114638751|ref|XP_508578.2| PREDICTED: RNA-binding protein 4B isoform 2 [Pan troglodytes]
gi|297688065|ref|XP_002821512.1| PREDICTED: RNA-binding protein 4B [Pongo abelii]
gi|397517079|ref|XP_003828747.1| PREDICTED: RNA-binding protein 4B [Pan paniscus]
gi|402892714|ref|XP_003909554.1| PREDICTED: RNA-binding protein 4B [Papio anubis]
gi|426369353|ref|XP_004051657.1| PREDICTED: RNA-binding protein 4B isoform 1 [Gorilla gorilla
gorilla]
gi|62511129|sp|Q9BQ04.1|RBM4B_HUMAN RecName: Full=RNA-binding protein 4B; AltName: Full=RNA-binding
motif protein 30; AltName: Full=RNA-binding motif
protein 4B; AltName: Full=RNA-binding protein 30
gi|13097558|gb|AAH03503.1| RNA binding motif protein 4B [Homo sapiens]
gi|13436323|gb|AAH04951.1| RNA binding motif protein 4B [Homo sapiens]
gi|119594964|gb|EAW74558.1| RNA binding motif protein 4B [Homo sapiens]
gi|193787792|dbj|BAG52995.1| unnamed protein product [Homo sapiens]
gi|208967358|dbj|BAG73693.1| RNA binding motif protein 4B [synthetic construct]
gi|325464201|gb|ADZ15871.1| RNA binding motif protein 4B [synthetic construct]
gi|355566265|gb|EHH22644.1| RNA-binding motif protein 4B [Macaca mulatta]
gi|355751922|gb|EHH56042.1| RNA-binding motif protein 4B [Macaca fascicularis]
Length = 359
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>gi|332249630|ref|XP_003273961.1| PREDICTED: RNA-binding protein 4B isoform 1 [Nomascus leucogenys]
Length = 359
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>gi|344295811|ref|XP_003419604.1| PREDICTED: RNA-binding protein 4B-like [Loxodonta africana]
Length = 359
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>gi|410974612|ref|XP_003993737.1| PREDICTED: RNA-binding protein 4B [Felis catus]
Length = 359
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>gi|296218879|ref|XP_002755663.1| PREDICTED: RNA-binding protein 4B [Callithrix jacchus]
Length = 372
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 21/149 (14%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRAL 202
YG +I I +++AFV E EDA A+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAI 128
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
+ GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF +
Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF--Q 137
Query: 117 GRRL-----RVEWTKHERG 130
G L R W + G
Sbjct: 138 GELLWGLGSRAVWAMNTCG 156
>gi|395851687|ref|XP_003798384.1| PREDICTED: RNA-binding protein 4B [Otolemur garnettii]
Length = 359
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>gi|398411554|ref|XP_003857115.1| hypothetical protein MYCGRDRAFT_102763 [Zymoseptoria tritici
IPO323]
gi|339477000|gb|EGP92091.1| hypothetical protein MYCGRDRAFT_102763 [Zymoseptoria tritici
IPO323]
Length = 377
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 92/194 (47%), Gaps = 22/194 (11%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKSGFAFIYMDDERDAEDAIRG 107
+ ++ GN ++ LE F R+G+V D + GFAF+ D+ A A +
Sbjct: 188 KILYVGNLFFEVTAPKLEAAFGRFGEVVSSKVVTDARGLSKGFAFVEFSDQEAANRAKQE 247
Query: 108 LDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRD 167
L+ TEF +GRRL V++ H + RR GG S R T +PSKTLF+ N Y RD
Sbjct: 248 LNHTEF--EGRRLSVQY--HLKKDRREGGFSP-REGGTRNKPSKTLFIGNMS-YQMSDRD 301
Query: 168 LERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 219
L F+ ++ VR+ R FA + E A +A + + R + ++Y
Sbjct: 302 LNDLFKEVRNVLDVRVAIDRRSGQPRGFAHADFIDMESAKKAKELLEQKSVYGRQLRIDY 361
Query: 220 AVRDDDDRRNGHSP 233
+ RD D ++ SP
Sbjct: 362 S-RDSGDNKSNSSP 374
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI-------RRNFAFVQYEVQEDATRA 201
PSK L+V N + LE F +G+++S ++ + FAFV++ QE A RA
Sbjct: 186 PSKILYVGNL-FFEVTAPKLEAAFGRFGEVVSSKVVTDARGLSKGFAFVEFSDQEAANRA 244
Query: 202 LDATNMSKLTDRVISVEYAVRDDDDRRNGHSP 233
N ++ R +SV+Y ++ D R G SP
Sbjct: 245 KQELNHTEFEGRRLSVQYHLK-KDRREGGFSP 275
>gi|178056229|ref|NP_001116659.1| RNA-binding protein 4 [Sus scrofa]
gi|115394772|gb|ABI97180.1| RBM4 [Sus scrofa]
Length = 365
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F +++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFAHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKTSTKLHVGNISPTCT-NKELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>gi|351710885|gb|EHB13804.1| RNA-binding protein 4 [Heterocephalus glaber]
Length = 192
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 23/155 (14%)
Query: 50 FEAMMRPI--FCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRG 107
F+A++R + F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR
Sbjct: 32 FQALVRMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRN 91
Query: 108 LDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRD 167
L + G + VE +K++ ++ S L V N P T ++
Sbjct: 92 LHH--YKLHGVNINVEASKNK------------------SKASTKLHVGNISPTCTN-QE 130
Query: 168 LERHFEPYGKIISVRIRRNFAFVQYEVQEDATRAL 202
L FE YG +I I +++AFV E EDA A+
Sbjct: 131 LRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAI 165
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
+ GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF
Sbjct: 117 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 173
>gi|410911524|ref|XP_003969240.1| PREDICTED: uncharacterized protein LOC101080136 isoform 2 [Takifugu
rubripes]
Length = 374
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 93/179 (51%), Gaps = 20/179 (11%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M ++ G Y AR++D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ E
Sbjct: 1 MSRVYIGRLSYRARENDVERFFKGYGKILEVDLKNGYGFVEFDDPRDADDAVYDLNGKEL 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGG--GSSARRPSTNTR--------PSKTLFVINFDPYHT 163
G R+ VE H +G RR GG G S RP R P +T + + + +
Sbjct: 61 C--GERVIVE---HTKGPRRDGGYSGRSKPRPGGYGRWGRDRYGPPIRTDYRLIVENLSS 115
Query: 164 RT--RDLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
R +DL+ + G++ + + R+N +++ D RAL+ + +++ R I +
Sbjct: 116 RCSWQDLKDYMRQAGEVTYADTHKGRKNEGVIEFRQYSDMKRALEKLDGTEVNGRKIRL 174
>gi|301616205|ref|XP_002937556.1| PREDICTED: hypothetical protein LOC100490607 [Xenopus (Silurana)
tropicalis]
Length = 324
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 79/164 (48%), Gaps = 21/164 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M IF G A +L++LF RYG+V+ D+ +AF++M+ E+DA AI L + EF
Sbjct: 1 MVKIFVGGVSPSASPDELKKLFERYGQVNECDILKNYAFVHMEREQDAHRAISELHKQEF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G L VE+ ++ R + ++V N T T ++ FE
Sbjct: 61 --YGSHLTVEY------------------ATSKIRNATKIYVGNVSSRAT-TSQVKELFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
+GK++ I +N+AFV + +A A+ N + L D+ I V
Sbjct: 100 KFGKVVECDIVKNYAFVHMAKEREAMDAILHLNDTPLEDQKIFV 143
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%)
Query: 167 DLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
+L++ FE YG++ I +N+AFV E ++DA RA+ + + ++VEYA
Sbjct: 17 ELKKLFERYGQVNECDILKNYAFVHMEREQDAHRAISELHKQEFYGSHLTVEYA 70
>gi|157822515|ref|NP_001102155.1| splicing factor, arginine/serine-rich 4 [Rattus norvegicus]
gi|149024115|gb|EDL80612.1| similar to Sfrs4 protein (predicted) [Rattus norvegicus]
Length = 488
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 18/172 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLC-- 61
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTR--------PSKTLFVINFDPYHTRT--R 166
G R+ VE H RG RR G S R R P++T + + + +R +
Sbjct: 62 GERVIVE---HARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 167 DLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
DL+ + G++ + + R+N +++ D RAL+ + +++ R I
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|165377173|ref|NP_065612.2| serine/arginine-rich splicing factor 4 [Mus musculus]
gi|26449170|dbj|BAC36925.1| unnamed protein product [Mus musculus]
gi|74152317|dbj|BAE33925.1| unnamed protein product [Mus musculus]
gi|148698178|gb|EDL30125.1| splicing factor, arginine/serine-rich 4 (SRp75) [Mus musculus]
Length = 491
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 90/172 (52%), Gaps = 18/172 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLC-- 61
Query: 117 GRRLRVEWTKHERGIRRPGGGSSAR-----RPSTNTR---PSKTLFVINFDPYHTRT--R 166
G R+ VE H RG RR G S R R S + P++T + + + +R +
Sbjct: 62 GERVIVE---HARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 167 DLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
DL+ + G++ + + R+N +++ D RAL+ + +++ R I
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|20978758|sp|Q8VE97.1|SRSF4_MOUSE RecName: Full=Serine/arginine-rich splicing factor 4; AltName:
Full=Splicing factor, arginine/serine-rich 4
gi|18043896|gb|AAH19437.1| Sfrs4 protein [Mus musculus]
Length = 489
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 18/172 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLC-- 61
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTR--------PSKTLFVINFDPYHTRT--R 166
G R+ VE H RG RR G S R R P++T + + + +R +
Sbjct: 62 GERVIVE---HARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 167 DLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
DL+ + G++ + + R+N +++ D RAL+ + +++ R I
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|410045417|ref|XP_003951989.1| PREDICTED: RNA-binding protein 4B isoform 1 [Pan troglodytes]
gi|426369355|ref|XP_004051658.1| PREDICTED: RNA-binding protein 4B isoform 2 [Gorilla gorilla
gorilla]
gi|441607717|ref|XP_004087894.1| PREDICTED: RNA-binding protein 4B isoform 2 [Nomascus leucogenys]
Length = 143
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 21/163 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCTN-QELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVIS 216
YG +I I +++AFV E EDA A+ + ++ R+I+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGRIIA 142
>gi|197098970|ref|NP_001126757.1| RNA-binding protein 4 [Pongo abelii]
gi|55732548|emb|CAH92974.1| hypothetical protein [Pongo abelii]
Length = 170
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 21/149 (14%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKTSTKLHVGNISPTCT-NKELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRAL 202
YG +I I +++AFV E EDA A+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAI 128
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 60 GNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRR 119
GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF +G+R
Sbjct: 83 GNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF--QGKR 140
Query: 120 LRVEWT 125
+ V+ +
Sbjct: 141 MHVQLS 146
>gi|241574282|ref|XP_002403075.1| alternative splicing factor SRp55/B52/SRp75, putative [Ixodes
scapularis]
gi|215502148|gb|EEC11642.1| alternative splicing factor SRp55/B52/SRp75, putative [Ixodes
scapularis]
Length = 364
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 88/176 (50%), Gaps = 20/176 (11%)
Query: 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 112
M ++ G YD R+ DLER F+ +G++ + +K+GF F+ DD RDA+DA+ L+ +
Sbjct: 1 MTSRVYVGRLNYDVRERDLERFFKGFGRIREISIKNGFGFVEFDDPRDADDAVYELNGKD 60
Query: 113 FGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTR--------PSKTLFVINFDPYHTR 164
G R+ VE RGIRR G R ST P++T + + + +R
Sbjct: 61 L--MGDRVSVELA---RGIRR--GADYYRSRSTAPSPPRRRYGPPTRTEYQLTVENLSSR 113
Query: 165 T--RDLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
+DL+ + G++ + ++RRN V++ D ALD + + L+ R I
Sbjct: 114 VSWQDLKDYMRQAGEVTYADAHKLRRNEGVVEFATYSDMKNALDKLDNTDLSGRRI 169
>gi|427777527|gb|JAA54215.1| Putative alternative splicing factor srp55/b52/srp75 rrm
superfamily [Rhipicephalus pulchellus]
Length = 363
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 89/177 (50%), Gaps = 22/177 (12%)
Query: 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 112
M ++ G Y+ R+ DLER F+ +G++ + +K+GF F+ DD RDA+DA+ L+ E
Sbjct: 1 MTSRVYVGRLNYEVRERDLERFFKGFGRIREISIKNGFGFVEFDDHRDADDAVYELNGKE 60
Query: 113 FGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTR---------PSKTLFVINFDPYHT 163
G R+ VE RGIRR G+ R +R P++T + + + +
Sbjct: 61 L--LGDRVSVELA---RGIRR---GADYYRSRAASRSPPRRRYGPPTRTEYQLTVENLSS 112
Query: 164 RT--RDLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
R +DL+ + G++ + R+RRN V++ D ALD + + L+ R I
Sbjct: 113 RVSWQDLKDYMRQAGEVTYADAHRLRRNEGVVEFATYSDMKNALDKLDNTDLSGRRI 169
>gi|442754133|gb|JAA69226.1| Putative alternative splicing factor srp55/b52/srp75 rrm
superfamily [Ixodes ricinus]
Length = 363
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 88/176 (50%), Gaps = 20/176 (11%)
Query: 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 112
M ++ G YD R+ DLER F+ +G++ + +K+GF F+ DD RDA+DA+ L+ +
Sbjct: 1 MTSRVYVGRLNYDVRERDLERFFKGFGRIREISIKNGFGFVEFDDPRDADDAVYELNGKD 60
Query: 113 FGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTR--------PSKTLFVINFDPYHTR 164
G R+ VE RGIRR G R ST P++T + + + +R
Sbjct: 61 L--MGDRVSVELA---RGIRR--GADYYRSRSTAPSPPRRRYGPPTRTEYQLTVENLSSR 113
Query: 165 T--RDLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
+DL+ + G++ + ++RRN V++ D ALD + + L+ R I
Sbjct: 114 VSWQDLKDYMRQAGEVTYADAHKLRRNEGVVEFATYSDMKNALDKLDNTDLSGRRI 169
>gi|226372036|gb|ACO51643.1| RNA-binding protein 4B [Rana catesbeiana]
Length = 328
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 82/168 (48%), Gaps = 21/168 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN A Q++L+ LF ++GKV D+ + +AF++M+D++ A++A+ L++ +
Sbjct: 1 MVKLFVGNLPPAATQTELKSLFEQFGKVSECDIITNYAFVHMEDKKSADEAVNNLNQCKL 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE H RG +P + S +T + +L FE
Sbjct: 61 --HGVSINVE---HSRG--KPRASTKLHVSSLSTDCTGD--------------ELREKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
YG ++ I +++AFV E E+A A+ N + + + V+ +
Sbjct: 100 EYGGVLECDIVKDYAFVHMEKAEEALEAIRNLNNLEFKGKKMHVQLST 147
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
+ + D +L F YG V D+ +AF++M+ +A +AIR L+ EF K
Sbjct: 80 LHVSSLSTDCTGDELREKFEEYGGVLECDIVKDYAFVHMEKAEEALEAIRNLNNLEF--K 137
Query: 117 GRRLRVEWTKHERGIRRPGGGSSAR 141
G+++ V+ + + PG G +R
Sbjct: 138 GKKMHVQLSTSRLRV-TPGMGEQSR 161
>gi|348571040|ref|XP_003471304.1| PREDICTED: serine/arginine-rich splicing factor 4-like [Cavia
porcellus]
Length = 497
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 90/172 (52%), Gaps = 18/172 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLC-- 61
Query: 117 GRRLRVEWTKHERGIRRPGGGSSAR-----RPSTNTR---PSKTLFVINFDPYHTRT--R 166
G R+ VE H RG RR G S R R S + P++T + + + +R +
Sbjct: 62 GERVIVE---HARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 167 DLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
DL+ + G++ + + R+N +++ D RAL+ + +++ R I
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|301788378|ref|XP_002929604.1| PREDICTED: hypothetical protein LOC100475275 [Ailuropoda
melanoleuca]
Length = 498
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 91/174 (52%), Gaps = 18/174 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLC-- 61
Query: 117 GRRLRVEWTKHERGIRRPGGGSSAR-----RPSTNTR---PSKTLFVINFDPYHTRT--R 166
G R+ VE H RG RR G S R R S + P++T + + + +R +
Sbjct: 62 GERVIVE---HARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 167 DLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
DL+ + G++ + + R+N +++ D RAL+ + +++ R I +
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRL 172
>gi|281340422|gb|EFB16006.1| hypothetical protein PANDA_019831 [Ailuropoda melanoleuca]
Length = 488
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 91/174 (52%), Gaps = 18/174 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLC-- 61
Query: 117 GRRLRVEWTKHERGIRRPGGGSSAR-----RPSTNTR---PSKTLFVINFDPYHTRT--R 166
G R+ VE H RG RR G S R R S + P++T + + + +R +
Sbjct: 62 GERVIVE---HARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 167 DLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
DL+ + G++ + + R+N +++ D RAL+ + +++ R I +
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRL 172
>gi|126338772|ref|XP_001364800.1| PREDICTED: RNA-binding protein 4B-like [Monodelphis domestica]
Length = 365
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 21/149 (14%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRALFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N T +L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISSACTNL-ELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRAL 202
YG +I I +++AFV E EDA A+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAI 128
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
+ GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF +
Sbjct: 80 LHVGNISSACTNLELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF--Q 137
Query: 117 GRRLRVEWT 125
G+R+ V+ +
Sbjct: 138 GKRMHVQLS 146
>gi|363746234|ref|XP_003643577.1| PREDICTED: RNA-binding protein 4B-like, partial [Gallus gallus]
Length = 242
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 21/149 (14%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHHKL 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T +L FE
Sbjct: 61 --HGVCINVEASKNK------------------SKASTKLHVGNISPTCTNL-ELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRAL 202
YG +I I +++AFV E EDA A+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAI 128
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 9/67 (13%)
Query: 59 CGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGR 118
C N E A+ F YG V D+ +AF++M+ DA +AIRGLD TEF +G+
Sbjct: 89 CTNLELRAK-------FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF--QGK 139
Query: 119 RLRVEWT 125
R+RV+ +
Sbjct: 140 RMRVQLS 146
>gi|155372181|ref|NP_001094701.1| serine/arginine-rich splicing factor 4 [Bos taurus]
gi|154425888|gb|AAI51319.1| SFRS4 protein [Bos taurus]
gi|296490028|tpg|DAA32141.1| TPA: splicing factor, arginine/serine-rich 4 [Bos taurus]
Length = 493
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 91/174 (52%), Gaps = 18/174 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLC-- 61
Query: 117 GRRLRVEWTKHERGIRRPGGGSSAR-----RPSTNTR---PSKTLFVINFDPYHTRT--R 166
G R+ VE H RG RR G S R R S + P++T + + + +R +
Sbjct: 62 GERVIVE---HARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 167 DLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
DL+ + G++ + + R+N +++ D RAL+ + +++ R I +
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRL 172
>gi|449279129|gb|EMC86791.1| RNA-binding protein 4, partial [Columba livia]
Length = 250
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 21/149 (14%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHHKL 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T +L FE
Sbjct: 61 --HGVCINVEASKNK------------------SKASTKLHVGNISPACTNM-ELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRAL 202
YG +I I +++AFV E EDA A+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAI 128
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 9/67 (13%)
Query: 59 CGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGR 118
C N E A+ F YG V D+ +AF++M+ DA +AIRGLD TEF +G+
Sbjct: 89 CTNMELRAK-------FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF--QGK 139
Query: 119 RLRVEWT 125
R+RV+ +
Sbjct: 140 RMRVQLS 146
>gi|410966619|ref|XP_003989828.1| PREDICTED: serine/arginine-rich splicing factor 4 [Felis catus]
Length = 499
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 91/174 (52%), Gaps = 18/174 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLC-- 61
Query: 117 GRRLRVEWTKHERGIRRPGGGSSAR-----RPSTNTR---PSKTLFVINFDPYHTRT--R 166
G R+ VE H RG RR G S R R S + P++T + + + +R +
Sbjct: 62 GERVIVE---HARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 167 DLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
DL+ + G++ + + R+N +++ D RAL+ + +++ R I +
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRL 172
>gi|351695941|gb|EHA98859.1| Splicing factor, arginine/serine-rich 4 [Heterocephalus glaber]
Length = 489
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 18/172 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLC-- 61
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTR--------PSKTLFVINFDPYHTRT--R 166
G R+ VE H RG RR G S R R P++T + + + +R +
Sbjct: 62 GERVIVE---HARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 167 DLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
DL+ + G++ + + R+N +++ D RAL+ + +++ R I
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|224164480|ref|XP_002196784.1| PREDICTED: RNA-binding protein 4B-like, partial [Taeniopygia
guttata]
Length = 333
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 21/149 (14%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHHKL 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T +L FE
Sbjct: 61 --HGVCINVEASKNK------------------SKASTKLHVGNISPACTNL-ELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRAL 202
YG +I I +++AFV E EDA A+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAI 128
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 47/94 (50%), Gaps = 10/94 (10%)
Query: 59 CGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGR 118
C N E A+ F YG V D+ +AF++M+ DA +AIRGLD TEF +G+
Sbjct: 89 CTNLELRAK-------FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF--QGK 139
Query: 119 RLRVEW-TKHERGIRRPGGGSSARRPSTNTRPSK 151
R+RV+ T R + G SS R SK
Sbjct: 140 RMRVQLSTSRLRTVPGMGDKSSCYRCGKEGHWSK 173
>gi|311771542|ref|NP_001185773.1| RNA-binding protein 4 isoform 3 [Homo sapiens]
gi|397517073|ref|XP_003828744.1| PREDICTED: RNA-binding protein 4 isoform 3 [Pan paniscus]
gi|426369351|ref|XP_004051656.1| PREDICTED: RNA-binding protein 4 isoform 4 [Gorilla gorilla
gorilla]
gi|410222934|gb|JAA08686.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410254454|gb|JAA15194.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410295010|gb|JAA26105.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352745|gb|JAA42976.1| RNA binding motif protein 4 [Pan troglodytes]
Length = 173
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 21/149 (14%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKTSTKLHVGNISPTCTN-KELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRAL 202
YG +I I +++AFV E EDA A+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAI 128
>gi|397517075|ref|XP_003828745.1| PREDICTED: RNA-binding protein 4 isoform 4 [Pan paniscus]
gi|18088917|gb|AAH21120.1| RBM4 protein [Homo sapiens]
gi|50949475|emb|CAH10593.1| hypothetical protein [Homo sapiens]
Length = 177
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 21/149 (14%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKTSTKLHVGNISPTCTN-KELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRAL 202
YG +I I +++AFV E EDA A+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAI 128
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 60 GNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF
Sbjct: 83 GNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
>gi|296207272|ref|XP_002750572.1| PREDICTED: serine/arginine-rich splicing factor 4 [Callithrix
jacchus]
Length = 500
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 91/174 (52%), Gaps = 18/174 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLC-- 61
Query: 117 GRRLRVEWTKHERGIRRPGGGSSAR-----RPSTNTR---PSKTLFVINFDPYHTRT--R 166
G R+ VE H RG RR G S R R S + P++T + + + +R +
Sbjct: 62 GERVIVE---HARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 167 DLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
DL+ + G++ + + R+N +++ D RAL+ + +++ R I +
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRL 172
>gi|403293287|ref|XP_003937651.1| PREDICTED: serine/arginine-rich splicing factor 4 [Saimiri
boliviensis boliviensis]
Length = 500
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 91/174 (52%), Gaps = 18/174 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLC-- 61
Query: 117 GRRLRVEWTKHERGIRRPGGGSSAR-----RPSTNTR---PSKTLFVINFDPYHTRT--R 166
G R+ VE H RG RR G S R R S + P++T + + + +R +
Sbjct: 62 GERVIVE---HARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 167 DLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
DL+ + G++ + + R+N +++ D RAL+ + +++ R I +
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRL 172
>gi|386780975|ref|NP_001247807.1| serine/arginine-rich splicing factor 4 [Macaca mulatta]
gi|355745074|gb|EHH49699.1| hypothetical protein EGM_00406 [Macaca fascicularis]
gi|380787433|gb|AFE65592.1| serine/arginine-rich splicing factor 4 [Macaca mulatta]
gi|383408863|gb|AFH27645.1| serine/arginine-rich splicing factor 4 [Macaca mulatta]
Length = 494
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 18/172 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLC-- 61
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTR--------PSKTLFVINFDPYHTRT--R 166
G R+ VE H RG RR G S R R P++T + + + +R +
Sbjct: 62 GERVIVE---HARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 167 DLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
DL+ + G++ + + R+N +++ D RAL+ + +++ R I
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|384939756|gb|AFI33483.1| serine/arginine-rich splicing factor 4 [Macaca mulatta]
Length = 494
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 18/172 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLC-- 61
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTR--------PSKTLFVINFDPYHTRT--R 166
G R+ VE H RG RR G S R R P++T + + + +R +
Sbjct: 62 GERVIVE---HARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 167 DLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
DL+ + G++ + + R+N +++ D RAL+ + +++ R I
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|126328783|ref|XP_001365267.1| PREDICTED: serine/arginine-rich splicing factor 4-like [Monodelphis
domestica]
Length = 491
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 91/174 (52%), Gaps = 18/174 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLC-- 61
Query: 117 GRRLRVEWTKHERGIRRPGGGSSAR-----RPSTNTR---PSKTLFVINFDPYHTRT--R 166
G R+ VE H RG RR G S R R S + P++T + + + +R +
Sbjct: 62 GERVIVE---HARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 167 DLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
DL+ + G++ + + R+N +++ D RAL+ + +++ R I +
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRL 172
>gi|426252106|ref|XP_004019759.1| PREDICTED: RNA-binding protein 4B isoform 2 [Ovis aries]
Length = 147
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 21/149 (14%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCTN-QELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRAL 202
YG +I I +++AFV E EDA A+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAI 128
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 60 GNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF
Sbjct: 83 GNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
>gi|332245240|ref|XP_003271770.1| PREDICTED: uncharacterized protein LOC100597914 isoform 1 [Nomascus
leucogenys]
Length = 494
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 18/172 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLC-- 61
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTR--------PSKTLFVINFDPYHTRT--R 166
G R+ VE H RG RR G S R R P++T + + + +R +
Sbjct: 62 GERVIVE---HARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 167 DLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
DL+ + G++ + + R+N +++ D RAL+ + +++ R I
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|114555162|ref|XP_001155042.1| PREDICTED: serine/arginine-rich splicing factor 4 isoform 5 [Pan
troglodytes]
gi|397515847|ref|XP_003828154.1| PREDICTED: serine/arginine-rich splicing factor 4 [Pan paniscus]
gi|261858864|dbj|BAI45954.1| splicing factor, arginine/serine-rich 4 [synthetic construct]
gi|410219650|gb|JAA07044.1| serine/arginine-rich splicing factor 4 [Pan troglodytes]
gi|410253776|gb|JAA14855.1| serine/arginine-rich splicing factor 4 [Pan troglodytes]
gi|410253778|gb|JAA14856.1| serine/arginine-rich splicing factor 4 [Pan troglodytes]
gi|410300938|gb|JAA29069.1| serine/arginine-rich splicing factor 4 [Pan troglodytes]
gi|410356834|gb|JAA44544.1| serine/arginine-rich splicing factor 4 [Pan troglodytes]
Length = 494
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 18/172 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLC-- 61
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTR--------PSKTLFVINFDPYHTRT--R 166
G R+ VE H RG RR G S R R P++T + + + +R +
Sbjct: 62 GERVIVE---HARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 167 DLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
DL+ + G++ + + R+N +++ D RAL+ + +++ R I
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|402853658|ref|XP_003891508.1| PREDICTED: serine/arginine-rich splicing factor 4 [Papio anubis]
Length = 494
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 18/172 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLC-- 61
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTR--------PSKTLFVINFDPYHTRT--R 166
G R+ VE H RG RR G S R R P++T + + + +R +
Sbjct: 62 GERVIVE---HARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 167 DLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
DL+ + G++ + + R+N +++ D RAL+ + +++ R I
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|119628064|gb|EAX07659.1| splicing factor, arginine/serine-rich 4, isoform CRA_c [Homo
sapiens]
Length = 464
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 18/172 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLC-- 61
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTR--------PSKTLFVINFDPYHTRT--R 166
G R+ VE H RG RR G S R R P++T + + + +R +
Sbjct: 62 GERVIVE---HARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 167 DLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
DL+ + G++ + + R+N +++ D RAL+ + +++ R I
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|21361282|ref|NP_005617.2| serine/arginine-rich splicing factor 4 [Homo sapiens]
gi|20981726|sp|Q08170.2|SRSF4_HUMAN RecName: Full=Serine/arginine-rich splicing factor 4; AltName:
Full=Pre-mRNA-splicing factor SRP75; AltName:
Full=SRP001LB; AltName: Full=Splicing factor,
arginine/serine-rich 4
gi|12803875|gb|AAH02781.1| Splicing factor, arginine/serine-rich 4 [Homo sapiens]
gi|30583669|gb|AAP36083.1| splicing factor, arginine/serine-rich 4 [Homo sapiens]
gi|60655747|gb|AAX32437.1| splicing factor arginine/serine-rich 4 [synthetic construct]
gi|123994341|gb|ABM84772.1| splicing factor, arginine/serine-rich 4 [synthetic construct]
Length = 494
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 18/172 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLC-- 61
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTR--------PSKTLFVINFDPYHTRT--R 166
G R+ VE H RG RR G S R R P++T + + + +R +
Sbjct: 62 GERVIVE---HARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 167 DLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
DL+ + G++ + + R+N +++ D RAL+ + +++ R I
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|119628063|gb|EAX07658.1| splicing factor, arginine/serine-rich 4, isoform CRA_b [Homo
sapiens]
gi|158256450|dbj|BAF84198.1| unnamed protein product [Homo sapiens]
Length = 494
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 18/172 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLC-- 61
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTR--------PSKTLFVINFDPYHTRT--R 166
G R+ VE H RG RR G S R R P++T + + + +R +
Sbjct: 62 GERVIVE---HARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 167 DLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
DL+ + G++ + + R+N +++ D RAL+ + +++ R I
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|30585347|gb|AAP36946.1| Homo sapiens splicing factor, arginine/serine-rich 4 [synthetic
construct]
gi|60652653|gb|AAX29021.1| splicing factor arginine/serine-rich 4 [synthetic construct]
Length = 495
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 18/172 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLC-- 61
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTR--------PSKTLFVINFDPYHTRT--R 166
G R+ VE H RG RR G S R R P++T + + + +R +
Sbjct: 62 GERVIVE---HARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 167 DLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
DL+ + G++ + + R+N +++ D RAL+ + +++ R I
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|395730870|ref|XP_003775801.1| PREDICTED: LOW QUALITY PROTEIN: serine/arginine-rich splicing
factor 4 [Pongo abelii]
Length = 492
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 18/172 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLC-- 61
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTR--------PSKTLFVINFDPYHTRT--R 166
G R+ VE H RG RR G S R R P++T + + + +R +
Sbjct: 62 GERVIVE---HARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 167 DLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
DL+ + G++ + + R+N +++ D RAL+ + +++ R I
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|417396175|gb|JAA45121.1| Putative rna-binding protein lark [Desmodus rotundus]
Length = 143
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 21/149 (14%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRTLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKTSTKLHVGNISPTCTN-KELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRAL 202
YG +I I +++AFV E EDA A+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAI 128
Score = 45.1 bits (105), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 60 GNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF
Sbjct: 83 GNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
>gi|311771540|ref|NP_001185772.1| RNA-binding protein 4 isoform 2 [Homo sapiens]
gi|332249624|ref|XP_003273958.1| PREDICTED: RNA-binding protein 4 isoform 1 [Nomascus leucogenys]
gi|338712241|ref|XP_003362680.1| PREDICTED: RNA-binding protein 4 isoform 3 [Equus caballus]
gi|397517071|ref|XP_003828743.1| PREDICTED: RNA-binding protein 4 isoform 2 [Pan paniscus]
gi|426252102|ref|XP_004019757.1| PREDICTED: RNA-binding protein 4 isoform 2 [Ovis aries]
gi|426369347|ref|XP_004051654.1| PREDICTED: RNA-binding protein 4 isoform 2 [Gorilla gorilla
gorilla]
gi|426369349|ref|XP_004051655.1| PREDICTED: RNA-binding protein 4 isoform 3 [Gorilla gorilla
gorilla]
gi|441607708|ref|XP_003273960.2| PREDICTED: RNA-binding protein 4 isoform 3 [Nomascus leucogenys]
gi|40787678|gb|AAH64960.1| RBM4 protein [Homo sapiens]
gi|410222936|gb|JAA08687.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410254456|gb|JAA15195.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410295012|gb|JAA26106.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352749|gb|JAA42978.1| RNA binding motif protein 4 [Pan troglodytes]
Length = 143
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 21/149 (14%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKTSTKLHVGNISPTCTN-KELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRAL 202
YG +I I +++AFV E EDA A+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAI 128
Score = 45.1 bits (105), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 60 GNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF
Sbjct: 83 GNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
>gi|62898449|dbj|BAD97164.1| splicing factor, arginine/serine-rich 4 variant [Homo sapiens]
Length = 382
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 18/172 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLC-- 61
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTR--------PSKTLFVINFDPYHTRT--R 166
G R+ VE H RG RR G S R R P++T + + + +R +
Sbjct: 62 GERVIVE---HARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 167 DLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
DL+ + G++ + + R+N +++ D RAL+ + +++ R I
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|431891168|gb|ELK02045.1| Splicing factor, arginine/serine-rich 4 [Pteropus alecto]
Length = 500
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 91/174 (52%), Gaps = 18/174 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLC-- 61
Query: 117 GRRLRVEWTKHERGIRRPGGGSSAR-----RPSTNTR---PSKTLFVINFDPYHTRT--R 166
G R+ VE H RG RR G S R R S + P++T + + + +R +
Sbjct: 62 GERVIVE---HARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 167 DLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
DL+ + G++ + + R+N +++ D RAL+ + +++ R I +
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRL 172
>gi|307438|gb|AAA36649.1| pre-mRNA splicing factor [Homo sapiens]
Length = 494
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 18/172 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLC-- 61
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTR--------PSKTLFVINFDPYHTRT--R 166
G R+ VE H RG RR G S R R P++T + + + +R +
Sbjct: 62 GERVIVE---HARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 167 DLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
DL+ + G++ + + R+N +++ D RAL+ + +++ R I
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|395856813|ref|XP_003800813.1| PREDICTED: serine/arginine-rich splicing factor 4 [Otolemur
garnettii]
Length = 503
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 90/172 (52%), Gaps = 18/172 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLC-- 61
Query: 117 GRRLRVEWTKHERGIRRPGGGSSAR-----RPSTNTR---PSKTLFVINFDPYHTRT--R 166
G R+ VE H RG RR G S R R S + P++T + + + +R +
Sbjct: 62 GERVIVE---HARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 167 DLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
DL+ + G++ + + R+N +++ D RAL+ + +++ R I
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|339522325|gb|AEJ84327.1| RNA-binding protein 4 [Capra hircus]
Length = 362
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 71/149 (47%), Gaps = 21/149 (14%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ F++ +D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNHGFVHREDKPAAEDAIRNLHHYKL 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + V G+S + T+T+ L V N P T ++L FE
Sbjct: 61 --HGVNINV--------------GASTNKSKTSTK----LHVGNISPTCT-NKELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRAL 202
YG +I I +++AFV E EDA A+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAI 128
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
+ GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF +
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF--Q 137
Query: 117 GRRL 120
G+R+
Sbjct: 138 GKRM 141
>gi|169404002|ref|NP_955868.1| serine/arginine-rich splicing factor 4 [Danio rerio]
gi|326676581|ref|XP_003200617.1| PREDICTED: hypothetical protein LOC321872 [Danio rerio]
gi|28461393|gb|AAH46895.1| Zgc:55809 [Danio rerio]
gi|182890456|gb|AAI64410.1| Zgc:55809 protein [Danio rerio]
Length = 366
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 89/178 (50%), Gaps = 21/178 (11%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M ++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 1 MSRVYVGKLSYRAREKDVERFFKGYGKILEVDLKNGYGFVEFDDPRDADDAVYDLNGKDL 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTR-----------PSKTLFVINFDPYH 162
G+R+ VE H G RR GG S R P++T + + +
Sbjct: 61 C--GKRVIVE---HTIGQRRDGGNRSGRSNRYGRGGGGGGGDRYGPPTRTDYRLIVENLS 115
Query: 163 TRT--RDLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
+R +DL+ + G++ + + R+N +++ D RAL+ + +++ R I
Sbjct: 116 SRCSWQDLKDYMRQAGEVTYADTNKGRKNEGVIEFRQYSDMKRALEKLDGTEVNGRKI 173
>gi|296089074|emb|CBI38777.3| unnamed protein product [Vitis vinifera]
Length = 183
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/35 (88%), Positives = 34/35 (97%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS 88
M+PIFCGN EYDARQSD+ERLFRRYGKVDRVD+KS
Sbjct: 79 MKPIFCGNLEYDARQSDVERLFRRYGKVDRVDLKS 113
>gi|55562787|gb|AAH86338.1| Rbm4b protein [Rattus norvegicus]
gi|60334832|gb|AAH90633.1| Rbm4 protein [Mus musculus]
gi|148701114|gb|EDL33061.1| mCG8382, isoform CRA_b [Mus musculus]
gi|149061995|gb|EDM12418.1| rCG48334, isoform CRA_c [Rattus norvegicus]
gi|219841854|gb|AAI44951.1| Rbm4 protein [Mus musculus]
Length = 143
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 21/149 (14%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCTN-QELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRAL 202
YG +I I +++AFV E EDA A+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAI 128
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 60 GNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF
Sbjct: 83 GNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
>gi|346468607|gb|AEO34148.1| hypothetical protein [Amblyomma maculatum]
Length = 338
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 22/177 (12%)
Query: 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 112
M ++ G Y+ R+ DLER F+ +G++ + +K+GF F+ DD RDA+DA+ L+ E
Sbjct: 1 MTSRVYVGRLNYEVRERDLERFFKGFGRIREISIKNGFGFVEFDDHRDADDAVYELNGKE 60
Query: 113 FGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTR---------PSKTLFVINFDPYHT 163
G R+ VE RGIRR G+ R +R P++T + + + +
Sbjct: 61 L--LGDRVSVELA---RGIRR---GADYYRSRAASRSPPRRRYGPPTRTEYQLTVENLSS 112
Query: 164 RT--RDLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
R +DL+ + G++ + R+RRN V++ D AL+ + + L+ R I
Sbjct: 113 RVSWQDLKDYMRQAGEVTYADAHRLRRNEGVVEFATYSDMKNALEKLDNTDLSGRRI 169
>gi|432921333|ref|XP_004080106.1| PREDICTED: RNA-binding protein 4.1-like [Oryzias latipes]
Length = 335
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 80/208 (38%), Gaps = 25/208 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M IF GN + + ++E LFR YG V +AF++MDD + A AIR L
Sbjct: 1 MVKIFIGNLSPETEKEEIEALFREYGAVTECAKYRNYAFVHMDDRKCATKAIRELH---- 56
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
+RR GG + PS P L + + +L FE
Sbjct: 57 -----------------LRRVGGRAMNVEPSRGKNPQGALKLHVVNVEKGSESELRELFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSP 233
YG + + +NFAFV ++ AL A + + I VR R G
Sbjct: 100 EYGSVTECAVIKNFAFVHMANYDEGMDALQALDNKDFQGKRIQ----VRVSKSRPRGAPE 155
Query: 234 DRNRDRSPDRGRRRSPSPYRRERGSPDY 261
+ P R P+PYR ER P Y
Sbjct: 156 EEEHLPPPPRTGYYPPAPYRPERPEPLY 183
>gi|116175257|ref|NP_001070684.1| serine/arginine-rich splicing factor 4 [Sus scrofa]
gi|115371753|gb|ABI96201.1| SFRS4 [Sus scrofa]
Length = 491
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 18/172 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLC-- 61
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTR--------PSKTLFVINFDPYHTRT--R 166
G R+ VE H RG RR G S R R P++T + + + +R +
Sbjct: 62 GERVIVE---HARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 167 DLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
DL+ + G++ + + R+N +++ D RAL+ + +++ R I
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|326932930|ref|XP_003212564.1| PREDICTED: serine/arginine-rich splicing factor 4-like [Meleagris
gallopavo]
Length = 475
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 87/173 (50%), Gaps = 20/173 (11%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLC-- 61
Query: 117 GRRLRVEWTKHERGIRRP---GGGSSA---RRPSTN-----TRPSKTLFVINFDPYHTRT 165
G R+ VE H RG RR G G S RR + TR L V N
Sbjct: 62 GERVIVE---HARGPRRDSSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSS-RCSW 117
Query: 166 RDLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
+DL+ + G++ + + R+N ++++ D RAL+ + +++ R I
Sbjct: 118 QDLKDYMRQAGEVTYADAHKGRKNEGVIEFKSYSDMKRALEKLDGTEVNGRKI 170
>gi|397517077|ref|XP_003828746.1| PREDICTED: RNA-binding protein 4 isoform 5 [Pan paniscus]
Length = 155
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 21/149 (14%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKTSTKLHVGNISPTCTN-KELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRAL 202
YG +I I +++AFV E EDA A+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAI 128
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 60 GNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF
Sbjct: 83 GNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
>gi|194384258|dbj|BAG64902.1| unnamed protein product [Homo sapiens]
Length = 173
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 21/149 (14%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDA+R L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAMRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKTSTKLHVGNISPTCTN-KELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRAL 202
YG +I I +++AFV E EDA A+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAI 128
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 60 GNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF
Sbjct: 83 GNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
>gi|344287504|ref|XP_003415493.1| PREDICTED: serine/arginine-rich splicing factor 4-like [Loxodonta
africana]
Length = 500
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 90/172 (52%), Gaps = 18/172 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLC-- 61
Query: 117 GRRLRVEWTKHERGIRRPGGGSSAR-----RPSTNTR---PSKTLFVINFDPYHTRT--R 166
G R+ VE H RG RR G S R R S + P++T + + + +R +
Sbjct: 62 GERVIVE---HARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 167 DLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
DL+ + G++ + + R+N +++ D RAL+ + +++ R I
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFLSYSDMKRALEKLDGTEVNGRKI 170
>gi|426369357|ref|XP_004051659.1| PREDICTED: RNA-binding protein 4B isoform 3 [Gorilla gorilla
gorilla]
Length = 151
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 21/149 (14%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCTN-QELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRAL 202
YG +I I +++AFV E EDA A+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAI 128
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 60 GNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF
Sbjct: 83 GNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
>gi|307192389|gb|EFN75624.1| Serine-arginine protein 55 [Harpegnathos saltator]
Length = 313
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 90/193 (46%), Gaps = 32/193 (16%)
Query: 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 112
M +F G Y R+ DLE+ FR+YG++ V MK+GFAF+ DD RDA+DA+ L+ E
Sbjct: 1 MSTRVFVGGLTYRVRERDLEKFFRKYGRIKEVAMKNGFAFVEFDDYRDADDAVYELNGKE 60
Query: 113 FGRKGRRLRVEWT--------KHERGIRRPGGGSSARRPST---NTR------------- 148
G R+ VE + G R G G S R + NTR
Sbjct: 61 L--LGERITVERARGTPRGSDQWRYGDSRGGYGDSRRSADSVNRNTRTASSYKQSLPRYG 118
Query: 149 -PSKTLFVINFDPYHTRT--RDLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRAL 202
P++T + + + +R +DL+ + G++ + + RRN V++ D A+
Sbjct: 119 PPTRTEYRLTVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFATYSDLKNAI 178
Query: 203 DATNMSKLTDRVI 215
D + ++L R I
Sbjct: 179 DKLDDTELNGRRI 191
>gi|427777529|gb|JAA54216.1| Putative alternative splicing factor asf/sf2 [Rhipicephalus
pulchellus]
Length = 308
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 81/163 (49%), Gaps = 14/163 (8%)
Query: 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 112
M +F G YD R+ DLER FR YG+++ + +K+GF F+ + D RDAEDA+R L+
Sbjct: 1 MATRVFVGRLNYDVRERDLERFFRGYGRIEDIVLKNGFGFVDISDYRDAEDAVRDLNGKR 60
Query: 113 FGRKGRRLRVEWTKHERGIRR--PGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLER 170
G R+ VE RG+RR P RR TR + L V N +DL+
Sbjct: 61 L--MGERVTVELA---RGMRRGPPDYDRGPRRFGPPTRTNYQLLVENLST-SVSWQDLKD 114
Query: 171 HFEPYGKII---SVRIRRN---FAFVQYEVQEDATRALDATNM 207
G + + ++RR+ F Y ++A R+LD ++
Sbjct: 115 FMRQAGDVTYTDAHKLRRHQGVVEFASYSDMKNALRSLDNVSL 157
Score = 41.6 bits (96), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%)
Query: 161 YHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
Y R RDLER F YG+I + ++ F FV DA A+ N +L ++VE A
Sbjct: 12 YDVRERDLERFFRGYGRIEDIVLKNGFGFVDISDYRDAEDAVRDLNGKRLMGERVTVELA 71
>gi|428183363|gb|EKX52221.1| hypothetical protein GUITHDRAFT_41825, partial [Guillardia theta
CCMP2712]
Length = 195
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 82/170 (48%), Gaps = 20/170 (11%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E LF +YG++ +++K+ FAF+ +D RDAEDAIRG D
Sbjct: 1 IYVGNLPLDIRTRDIEDLFYKYGRIRDIEVKTPNRPPAFAFVSFEDYRDAEDAIRGRDGI 60
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERH 171
F +G RLR E + R G S ++P + R S +++ P +DL+ H
Sbjct: 61 SF--EGARLRCEMS------RGNGPRGSRQQPRRDLRRSDYRVIVSNLPPSASWQDLKDH 112
Query: 172 FEPYGKIISVRIRRNFA-------FVQYEVQEDATRALDATNMSKLTDRV 214
F G+++ + R+ F QE A + LD T D+V
Sbjct: 113 FRQVGEVVYTDVDRSLKSSGGIVEFASRSEQEAAIKQLDDTEFKNPFDKV 162
>gi|149062001|gb|EDM12424.1| rCG48244, isoform CRA_b [Rattus norvegicus]
Length = 172
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 21/149 (14%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRAL 202
YG +I I +++AFV E EDA A+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAI 128
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 60 GNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF
Sbjct: 83 GNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
>gi|156379214|ref|XP_001631353.1| predicted protein [Nematostella vectensis]
gi|156218392|gb|EDO39290.1| predicted protein [Nematostella vectensis]
Length = 200
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 89/180 (49%), Gaps = 21/180 (11%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M IF G D R+SD+E+ R YGK+ + +K G+ F+ DD RDAEDA+ L+ +
Sbjct: 1 MSRIFLGRLPRDVRESDVEKFLRGYGKIRDISLKRGYGFVEFDDHRDAEDAVHDLNGRDL 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTR-----------PSKTLFVINFDPYH 162
G R+ VE++K G R GGG R S P +T + + +
Sbjct: 61 --IGERVVVEFSK---GRRSEGGGRDRRDFSGRGGRDGGRRPIYGPPVRTNYSVIVENLS 115
Query: 163 TRT--RDLERHFEPYGKIISV---RIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
+RT +DL+ +F YGK+ + R V++E ++D A++ + ++L R I V
Sbjct: 116 SRTSWQDLKDYFRKYGKVTYADAHKKRIGEGVVEFESKDDLNTAIEKLDDTELGGRRIRV 175
>gi|399218146|emb|CCF75033.1| unnamed protein product [Babesia microti strain RI]
Length = 230
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 17/191 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG-------FAFIYMDDERDAEDAIRGLD 109
IF GN D ++E +F ++G++ +D+K G +AFI RDAEDA+ D
Sbjct: 16 IFVGNLPEDITVREIENIFGKFGEIRDIDIKKGKTSNYTAYAFIEFYHMRDAEDAVESRD 75
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGG-GSSARRPS--TNTRPSKTLFVINFDPYHTRTR 166
F + RLRVE++ G +R G G RR + +NTR L + N R +
Sbjct: 76 GYNFDKY--RLRVEFS----GRKRSGNQGDKLRRYNDYSNTRTEHRLVISNISS-SCRWQ 128
Query: 167 DLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDD 226
D++ H + G + V I+ +V+Y + D AL+ + S+L S VR DD
Sbjct: 129 DIKDHMKRAGPVGHVCIKDGRGYVEYINKSDMKYALEKYDGSELQSAGRSYRIKVRMDDH 188
Query: 227 RRNGHSPDRNR 237
R + HS +R+R
Sbjct: 189 RSHSHSNERSR 199
>gi|345321114|ref|XP_003430384.1| PREDICTED: RNA-binding protein 4B-like isoform 1 [Ornithorhynchus
anatinus]
gi|345321116|ref|XP_003430385.1| PREDICTED: RNA-binding protein 4B-like isoform 2 [Ornithorhynchus
anatinus]
gi|345321118|ref|XP_003430386.1| PREDICTED: RNA-binding protein 4B-like isoform 3 [Ornithorhynchus
anatinus]
Length = 143
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 21/163 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T +L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCTNM-ELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVIS 216
YG +I I +++AFV E EDA A+ + ++ R+ +
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGRIFA 142
>gi|345312744|ref|XP_003429290.1| PREDICTED: RNA-binding protein 4B-like isoform 2 [Ornithorhynchus
anatinus]
Length = 143
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 21/149 (14%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T +L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCTNM-ELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRAL 202
YG +I I +++AFV E EDA A+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAI 128
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 59 CGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGR 118
C N E A+ F YG V D+ +AF++M+ DA +AIRGLD TEF + G
Sbjct: 89 CTNMELRAK-------FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF-QGGM 140
Query: 119 RL 120
RL
Sbjct: 141 RL 142
>gi|149061996|gb|EDM12419.1| rCG48334, isoform CRA_d [Rattus norvegicus]
Length = 173
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 21/149 (14%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRAL 202
YG +I I +++AFV E EDA A+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAI 128
Score = 45.1 bits (105), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 60 GNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF
Sbjct: 83 GNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
>gi|357516353|ref|XP_003628465.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
gi|355522487|gb|AET02941.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
Length = 326
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 90/194 (46%), Gaps = 15/194 (7%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R ++ GN D R+ ++E LF +YG + +D+K G+AF+ +D +DAEDAIRG D
Sbjct: 33 RTVYVGNLPGDIREREVEDLFMKYGHITHIDLKVPPRPPGYAFVEFEDVQDAEDAIRGRD 92
Query: 110 RTEFGRKGRRLRVEWTKHERGIR----RPGGGSSARRPSTNTRPSKTLFVINFDPYHTRT 165
+F G RLRVE RG R S+ R +R S+ ++N P
Sbjct: 93 GYDF--DGHRLRVEAAHGGRGNSSSRDRYSSHSNGRGGRGVSRRSEYRVIVNGLPSSASW 150
Query: 166 RDLERHFEPYGKIISVRI----RRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
+DL+ H G + ++ R V Y +D A+ + S+ + V
Sbjct: 151 QDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKSYVRV 210
Query: 222 RDDDDRRNGHSPDR 235
R+ D RR+ SP R
Sbjct: 211 REYDSRRDSRSPGR 224
>gi|198421232|ref|XP_002126906.1| PREDICTED: similar to splicing factor, arginine/serine-rich 4
isoform 1 [Ciona intestinalis]
Length = 272
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 90/174 (51%), Gaps = 18/174 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G + AR++D+E FR YGK++ + +K+GF F+ DDERDA+DAI L+
Sbjct: 7 VYIGRLSHRARENDVEHFFRGYGKINDLMLKNGFGFVIFDDERDADDAIHDLNGKSLC-- 64
Query: 117 GRRLRVEWTKHERGIRRPGGGSSAR--------RPSTNTRPSKT--LFVINFDPYHTRTR 166
G R+ +E K R PGG SS+ R ST P+ L V N T +
Sbjct: 65 GERVMLEIAKGTP--RGPGGESSSSSYYQQQQPRSSTKGIPNHGYRLIVENLSSRVT-WQ 121
Query: 167 DLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
DL+ + G+++ + R RRN V++ +++ A++ N +++ R I +
Sbjct: 122 DLKDYMRQCGEVVYADANRYRRNEGVVEFSSRKEMKYAIEKLNGTEINGRHIKL 175
>gi|147901982|ref|NP_001087983.1| RNA binding motif protein 4B [Xenopus laevis]
gi|52139141|gb|AAH82645.1| LOC494668 protein [Xenopus laevis]
Length = 336
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 84/168 (50%), Gaps = 21/168 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A Q +L+ LF ++G+V D+ + F++MDD++ A++A+R L+ +
Sbjct: 1 MVKLFVGNLPPEATQPELKSLFEQFGRVTECDIIKNYGFVHMDDKKAADEAVRNLNH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
+ VE H RG +P+ +T+ L V N T + +L FE
Sbjct: 59 KLHNVSINVE---HSRG-----------KPNASTK----LHVSNLSSSCT-SEELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
YG ++ I +++AFV E+ +A A+ + ++ + + V+ +
Sbjct: 100 EYGAVLECDIVKDYAFVHMEISAEALDAIKNLDNTEFKGKRMHVQLST 147
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
+ N +L F YG V D+ +AF++M+ +A DAI+ LD TEF K
Sbjct: 80 LHVSNLSSSCTSEELRAKFEEYGAVLECDIVKDYAFVHMEISAEALDAIKNLDNTEF--K 137
Query: 117 GRRLRVEWTKHERGIRRPGGGSSAR 141
G+R+ V+ + + PG G R
Sbjct: 138 GKRMHVQLSTSRLRV-TPGMGERTR 161
>gi|26352530|dbj|BAC39895.1| unnamed protein product [Mus musculus]
gi|74183052|dbj|BAE20479.1| unnamed protein product [Mus musculus]
gi|74186507|dbj|BAE34743.1| unnamed protein product [Mus musculus]
Length = 168
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 21/149 (14%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRAL 202
YG +I I +++AFV E EDA A+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAI 128
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 60 GNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRR 119
GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF +G
Sbjct: 83 GNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF--QGES 140
Query: 120 LRVEWTKHERGIR 132
L W+ + +R
Sbjct: 141 LF--WSAQYKAVR 151
>gi|326926668|ref|XP_003209520.1| PREDICTED: RNA-binding protein 4B-like [Meleagris gallopavo]
Length = 154
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 21/149 (14%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHHKL 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T +L FE
Sbjct: 61 --HGVCINVEASKNK------------------SKASTKLHVGNISPTCTNL-ELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRAL 202
YG +I I +++AFV E EDA A+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAI 128
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 59 CGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
C N E A+ F YG V D+ +AF++M+ DA +AIRGLD TEF
Sbjct: 89 CTNLELRAK-------FEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
>gi|440907568|gb|ELR57702.1| Serine/arginine-rich splicing factor 4, partial [Bos grunniens
mutus]
Length = 488
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 89/171 (52%), Gaps = 18/171 (10%)
Query: 60 GNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRR 119
G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ + G R
Sbjct: 1 GRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLC--GER 58
Query: 120 LRVEWTKHERGIRRPGGGSSAR-----RPSTNTR---PSKTLFVINFDPYHTRT--RDLE 169
+ VE H RG RR G S R R S + P++T + + + +R +DL+
Sbjct: 59 VIVE---HARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDLK 115
Query: 170 RHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
+ G++ + + R+N +++ D RAL+ + +++ R I +
Sbjct: 116 DYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRL 166
>gi|45360753|ref|NP_989050.1| RNA binding motif protein 14 [Xenopus (Silurana) tropicalis]
gi|38174074|gb|AAH61344.1| RNA binding motif protein 14 [Xenopus (Silurana) tropicalis]
gi|89269922|emb|CAJ81697.1| novel protein containing RNA recognition motifs. (a.k.a. RRM, RBD,
or RNP domain) [Xenopus (Silurana) tropicalis]
Length = 468
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 119/277 (42%), Gaps = 45/277 (16%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
IF GN + Q ++ LF RYG V + +AF++M +A A+ L+ E
Sbjct: 10 IFVGNVDDSTTQEEITELFERYGTVVNCAVMKQYAFVHMRGSEEATKAVEDLNGRELN-- 67
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKT--LFVINFDPYHTRTRDLERHFEP 174
G+++ VE +K RP T +FV N ++ + FE
Sbjct: 68 GKKMLVELSK--------------------PRPQNTWKIFVGNVSS-SCEVSEIRKMFEE 106
Query: 175 YGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSPD 234
+G+++ I +++AFV + ++ A++A N ++ + I+VE + + NG S
Sbjct: 107 HGRVVECDIVKDYAFVHMTRESESRAAIEALNGKEVKGKRINVEMSHKVRPVAANGSS-- 164
Query: 235 RNRDRSPDRGRRRSPSPYRRERGS-PDYGRGSSRSPYRRERGSPDYGRV---------RS 284
+R R DR +S Y R + Y + +S Y ER +P+ R S
Sbjct: 165 HSRRRPDDREAPQSRESYNHRRATEAAYASYALKSNY--ERYAPESSRYDLYESRPRPTS 222
Query: 285 PSPYRRDRG---SPDYGRNSS---RSPYKKERAAIGH 315
P Y RDR PDY + + S Y+ E A G+
Sbjct: 223 PMYYARDRSPMRRPDYALSQTAALASKYRSEAAGFGN 259
>gi|357511267|ref|XP_003625922.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
gi|355500937|gb|AES82140.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
Length = 401
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 90/194 (46%), Gaps = 15/194 (7%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R ++ GN D R+ ++E LF +YG + +D+K G+AF+ +D +DAEDAIRG D
Sbjct: 108 RTVYVGNLPGDIREREVEDLFMKYGHITHIDLKVPPRPPGYAFVEFEDVQDAEDAIRGRD 167
Query: 110 RTEFGRKGRRLRVEWTKHERGIR----RPGGGSSARRPSTNTRPSKTLFVINFDPYHTRT 165
+F G RLRVE RG R S+ R +R S+ ++N P
Sbjct: 168 GYDF--DGHRLRVEAAHGGRGNSSSRDRYSSHSNGRGGRGVSRRSEYRVIVNGLPSSASW 225
Query: 166 RDLERHFEPYGKIISVRI----RRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
+DL+ H G + ++ R V Y +D A+ + S+ + V
Sbjct: 226 QDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKSYVRV 285
Query: 222 RDDDDRRNGHSPDR 235
R+ D RR+ SP R
Sbjct: 286 REYDSRRDSRSPGR 299
>gi|91088839|ref|XP_970745.1| PREDICTED: similar to lark CG8597-PA [Tribolium castaneum]
gi|270012337|gb|EFA08785.1| hypothetical protein TcasGA2_TC006476 [Tribolium castaneum]
Length = 358
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 18/165 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
IF GN +DL LF +YGKV D+ + F++M++E + +AI+ L+
Sbjct: 12 IFIGNLAEKTAVTDLRPLFEKYGKVVECDVVKNYGFVHMENESEGREAIQNLNGHML--N 69
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYG 176
G+ ++ E K S + P T P+ +FV N +T+ + F+ YG
Sbjct: 70 GQPMKCEAAK------------SRKAPQT---PTTKIFVGNLTD-NTKAPQIRELFKKYG 113
Query: 177 KIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
++ I RN+ FV E D A+ N + + + + V+ +
Sbjct: 114 TVVECDIVRNYGFVHLESSGDVNEAIKELNGTLVDGQPMKVQVST 158
>gi|427777415|gb|JAA54159.1| Putative alternative splicing factor [Rhipicephalus pulchellus]
Length = 484
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 85/172 (49%), Gaps = 12/172 (6%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M ++ G+ Y R+ DLER FR +GK+ V +K+GF F+ DD RDA+DA+ L+ E
Sbjct: 1 MTRVYVGHLSYRVRERDLERFFRGFGKIREVLLKNGFGFVEFDDYRDADDAVYELNGREL 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTR---PSKTLFVINFDPYHTRT--RDL 168
G R+ VE RRP SA S R P++T + + + +R +DL
Sbjct: 61 --DGERVVVELAHGT--ARRPPPPRSAWADSGTNRYGPPTRTDYRVIIENLSSRISWQDL 116
Query: 169 ERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
+ G + + R RRN V++ D RA++ + +++ R I V
Sbjct: 117 KDRMRQVGDVTYADAHRHRRNEGVVEFASYSDMKRAIEKLDNTEINGRRIRV 168
>gi|301114008|ref|XP_002998774.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262112075|gb|EEY70127.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 392
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 82/171 (47%), Gaps = 23/171 (13%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ GN Y+ Q D+E F ++G +++ +K G+AF++ + DAE A++ ++ E G
Sbjct: 11 LYVGNLFYELTQRDVEAEFGKFGPIEQCAVKKGYAFVHYEQLEDAELAVQEMNDKELG-- 68
Query: 117 GRRLRVEWTKHERGIRRPGG--------GSSARRPSTNT-----RPSKTLFVINFDPYHT 163
GRRLRV + RR G S A P ++ S LFV N P H
Sbjct: 69 GRRLRVAFAVSHGTQRRFDGPPPPMQNNASPAPPPLLHSPRFPVNASPNLFVANIPP-HI 127
Query: 164 RTRDLERHFEPYGKIISVRIRRNF-------AFVQYEVQEDATRALDATNM 207
+ +L++ F +G++ +V++ AFV Y A +A AT +
Sbjct: 128 KMSELDQAFAQFGEVKNVKVLPQARPDAPMSAFVDYTDISSAQKAHSATII 178
>gi|340726341|ref|XP_003401518.1| PREDICTED: serine/arginine-rich splicing factor 1-like [Bombus
terrestris]
gi|350423930|ref|XP_003493634.1| PREDICTED: serine/arginine-rich splicing factor 1-like [Bombus
impatiens]
Length = 248
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 105/227 (46%), Gaps = 31/227 (13%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG----FAFIYMDDERDAEDAIRGLDRTE 112
I+ GN D R D++ LF ++GKV VD+K+ FAF+ DD RDAEDA+ D +
Sbjct: 11 IYVGNLPPDIRTKDIQDLFYKFGKVIFVDLKNRRGPPFAFVEFDDPRDAEDAVHARDGYD 70
Query: 113 FGRKGRRLRVEW------TKHERGIRRPG-GGSSARRPSTNTRP-------SKTLFVINF 158
+ G RLRVE+ + + RG R G G R +N+R S+ ++
Sbjct: 71 Y--DGYRLRVEFPRGGGPSNNFRGGRGAGDSGRGGRGEMSNSRGRGPPARRSQYRVLVTG 128
Query: 159 DPYHTRTRDLERHFEPYGKIISVRIRRN----FAFVQYEVQEDATRALDATNMSKLTDRV 214
P +DL+ H G + + ++ F++YE + A + LD + V
Sbjct: 129 LPPSGSWQDLKDHMREAGDVCFADVYKDGTGVVEFLRYEDMKYAVKKLDDSRFRSHEGEV 188
Query: 215 ISVEYAVRDDDDRRNGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDY 261
+ V++D + S DR R +RGR S S R RGSP Y
Sbjct: 189 AYIR--VKEDHN-----SGDRGRSEDRERGRSHSRSYSPRRRGSPTY 228
>gi|341902095|gb|EGT58030.1| CBN-RSP-3 protein [Caenorhabditis brenneri]
Length = 275
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 92/214 (42%), Gaps = 37/214 (17%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG----FAFIYMDDERDAEDAIRGLDRTE 112
++ GN DA + D+ LF YG+V VD+K+G FAF+ D RDA+DA+ LD+
Sbjct: 9 LYVGNIPEDATKEDIYDLFETYGRVLYVDIKNGKISRFAFVAYRDFRDADDAVNYLDK-- 66
Query: 113 FGRKGRRLRVEWTKHERGIRRPGGGSS------------ARRPSTNTRPSKTLFVINFDP 160
F GR LRVE H G+ G G AR P R S + P
Sbjct: 67 FDYHGRSLRVE---HSTGVGPRGWGGQPLSSINGDNFRIARGPGGPQRRSDFRVFVEGIP 123
Query: 161 YHTRTRDLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKLTDRVISVEY 219
+DL+ HF P G+I I N V++E + R++D + ++ T S
Sbjct: 124 QTGSWQDLKDHFRPAGEICFAMISHNKTGIVEFEKKSSVQRSIDIFDKTEFTSHHTS--- 180
Query: 220 AVRDDDDRRNGHSPDRNRDRSPDRGRRRSPSPYR 253
R H P ++PD P P+R
Sbjct: 181 --------RKHHVPAIGHAQNPD----HHPVPHR 202
>gi|319411853|emb|CBQ73896.1| probable PAB1-mRNA polyadenylate-binding protein [Sporisorium
reilianum SRZ2]
Length = 650
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 91/208 (43%), Gaps = 23/208 (11%)
Query: 40 RSHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAF 92
R Q I A ++ N + D + E+LF RYGK+ ++ GF F
Sbjct: 212 RKERQAKIEESRANFTNVYAKNVDPDVTDEEFEKLFTRYGKITSCVLQRDDDGKSKGFGF 271
Query: 93 IYMDDERDAEDAIRGLDRTEFGRKGRRLRV----EWTKHERGIRRPGGGSSARRPSTNTR 148
+ +D +A+ A+ L ++F KG++L V + ++ E +RR +A+
Sbjct: 272 VNFEDHNEAQTAVDELHDSDF--KGQKLFVARAQKKSEREEELRR--SYEAAKNEKLAKF 327
Query: 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRR-------NFAFVQYEVQEDATRA 201
L++ N + R L F P+G I S +I R F FV Y V E+A +A
Sbjct: 328 QGVNLYLKNIPESYDDER-LREEFAPFGAITSCKIMRAPSGVSRGFGFVCYSVPEEANKA 386
Query: 202 LDATNMSKLTDRVISVEYAVRDDDDRRN 229
+ N L +R + V A R DD R+
Sbjct: 387 VSEMNGKMLDNRPLYVALAQRKDDRRQQ 414
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 75/179 (41%), Gaps = 31/179 (17%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDAIRGL 108
++ G + ++ L +F G V D V +S G+A++ + D E A+ L
Sbjct: 49 LYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQL 108
Query: 109 DRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDL 168
+ + + R R+ W++ + +RR G G+ +F+ N D + L
Sbjct: 109 NYSLI--RNRPCRIMWSQRDPALRRTGQGN--------------IFIKNLDA-GIDNKAL 151
Query: 169 ERHFEPYGKIISVRIRRN------FAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
F +G I+S ++ N + FV YE E A A+ N L D+ + V + +
Sbjct: 152 HDTFAAFGNILSCKVATNDTGSLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHI 210
>gi|74139976|dbj|BAE31823.1| unnamed protein product [Mus musculus]
Length = 636
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 97/219 (44%), Gaps = 38/219 (17%)
Query: 57 IFCGNFE-YDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGR 115
IF GN + D +L LF YG V + FAF++M + A AI L E R
Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHEL-R 61
Query: 116 KGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKT--LFVINFDPYHTRTRDLERHFE 173
GR L VE + RP RP T +FV N T +++L FE
Sbjct: 62 PGRALVVE-------MSRP-------------RPLNTWKIFVGNVSAACT-SQELRSLFE 100
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSP 233
G++I + +++AFV E + DA A+ N ++ + I+VE + + ++ G +
Sbjct: 101 RRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK---GQKKGPAL 157
Query: 234 DRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRR 272
N D G+ R P+P P +GR RSP RR
Sbjct: 158 AINSTGGFD-GQARQPTP-------PFFGR--DRSPLRR 186
>gi|2914669|gb|AAC04476.1| SRP0001LB [Homo sapiens]
Length = 192
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 87/172 (50%), Gaps = 18/172 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLC-- 61
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTR--------PSKTLFVINFDPYHTRT--R 166
G R+ VE H RG RR G S R R P++T + + + +R +
Sbjct: 62 GERVIVE---HARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 167 DLERHFEPYGKIISV---RIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
DL+ + G++ + R+N +++ D RAL+ + +++ R I
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|66548276|ref|XP_393525.2| PREDICTED: serine/arginine-rich splicing factor 1-like [Apis
mellifera]
Length = 248
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 105/227 (46%), Gaps = 31/227 (13%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG----FAFIYMDDERDAEDAIRGLDRTE 112
I+ GN D R D++ LF ++GKV VD+K+ FAF+ DD RDAEDA+ D +
Sbjct: 11 IYVGNLPPDIRTKDIQDLFYKFGKVIFVDLKNRRGPPFAFVEFDDPRDAEDAVHARDGYD 70
Query: 113 FGRKGRRLRVEW------TKHERGIRRPG-GGSSARRPSTNTRP-------SKTLFVINF 158
+ G RLRVE+ + + RG R G G R +N+R S+ ++
Sbjct: 71 Y--DGYRLRVEFPRGGGPSNNFRGGRGAGDSGRGGRGEMSNSRGRGPPARRSQYRVLVTG 128
Query: 159 DPYHTRTRDLERHFEPYGKIISVRIRRN----FAFVQYEVQEDATRALDATNMSKLTDRV 214
P +DL+ H G + + ++ F++YE + A + LD + V
Sbjct: 129 LPPSGSWQDLKDHMREAGDVCFADVFKDGTGVVEFLRYEDMKYAVKKLDDSRFRSHEGEV 188
Query: 215 ISVEYAVRDDDDRRNGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDY 261
+ V++D + S DR R +RGR S S R RGSP Y
Sbjct: 189 AYIR--VKEDHN-----SGDRGRSEDRERGRSHSRSYSPRRRGSPTY 228
>gi|448878395|gb|AGE46160.1| arginine/serine-rich splicing factor RS27 transcript II
[Physcomitrella patens subsp. patens]
Length = 100
Score = 70.1 bits (170), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/44 (63%), Positives = 38/44 (86%)
Query: 52 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYM 95
A +RP++CGNFEYDARQS++ERLF+ YG+V+RVDMK+G + M
Sbjct: 3 AKIRPVYCGNFEYDARQSEIERLFKEYGRVERVDMKTGMSMKSM 46
>gi|328786023|ref|XP_623841.3| PREDICTED: RNA-binding protein lark-like isoform 1 [Apis mellifera]
Length = 356
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 18/165 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
IF GN +D++ LF +YGKV D+ + F++M++E +AI+ L+
Sbjct: 12 IFIGNLADKTTNADIKPLFEKYGKVVECDVVKNYGFVHMENEEAGRNAIQNLNGHIV--H 69
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYG 176
G+ ++ E K +G P+T P+ +FV N +T+ + F YG
Sbjct: 70 GQEIKCEAAKSRKG------------PNT---PTTKIFVGNLTD-NTKAPQVRELFAKYG 113
Query: 177 KIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
++ I RN+ FV E D A+ N + + + V+ +
Sbjct: 114 TVVECDIVRNYGFVHLEATGDVNDAIKELNGRMVDGQAMKVQIST 158
>gi|348519445|ref|XP_003447241.1| PREDICTED: hypothetical protein LOC100690923 isoform 2 [Oreochromis
niloticus]
Length = 386
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 86/167 (51%), Gaps = 7/167 (4%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M ++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ E
Sbjct: 1 MSRVYIGRLSYRAREKDVERFFKGYGKILEVDLKNGYGFVEFDDPRDADDAVYDLNGKEL 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRT--RDLERH 171
G R+ VE T+ R GGG P +T + + + +R +DL+ +
Sbjct: 61 C--GERVIVEHTRGPRRDGGYGGGGGGGGRDRYGPPIRTDYRLIVENLSSRCSWQDLKDY 118
Query: 172 FEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
G++ + + R+N +++ + D RAL+ + +++ R I
Sbjct: 119 MRQAGEVTYADTHKGRKNEGVIEFRLYSDMKRALEKLDGTEVNGRKI 165
>gi|444321552|ref|XP_004181432.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
gi|387514476|emb|CCH61913.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
Length = 577
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 80/184 (43%), Gaps = 19/184 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-------GFAFIYMDDERDAEDAIRGLD 109
++ N + +A + D E LF+ YG + V ++ GF F+ ++ DA A+ L+
Sbjct: 226 VYVKNLDLEATEEDFENLFKPYGTITSVALEKDAEGKSRGFGFVDFENHEDAVKAVEALN 285
Query: 110 RTEFGRKGRRLRV--EWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRD 167
TE+ KG+ L V K+ER +++ LF+ N D
Sbjct: 286 DTEY--KGQTLYVGRAQKKYERLQELKKQYQASKLEKLAKYQGINLFIKNLDD-SIDDEK 342
Query: 168 LERHFEPYGKIISVRIRRN-------FAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
L+ F P+G I S R+ R F FV + E+ATRA+ N + + + V A
Sbjct: 343 LKEEFAPFGTITSARVMRTENGKSKGFGFVCFSTPEEATRAITEKNQQIVAGKPLYVAIA 402
Query: 221 VRDD 224
R D
Sbjct: 403 QRKD 406
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 73/178 (41%), Gaps = 31/178 (17%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKSGFAFIYMDDE---RDAEDAIR 106
IF N D L F +G + D GF F++ ++E R+A DAI
Sbjct: 133 IFIKNLHPDIDNKTLYETFSVFGNILSCKIANDETGKSKGFGFVHFENEEAAREAIDAIN 192
Query: 107 GLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTR 166
G+ G+ + V H R AR TN ++V N D T
Sbjct: 193 GMLLN-----GQEVYV--APHVSKKDRQSKLDEARANFTN------VYVKNLDLEATE-E 238
Query: 167 DLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
D E F+PYG I SV + R F FV +E EDA +A++A N ++ + + V
Sbjct: 239 DFENLFKPYGTITSVALEKDAEGKSRGFGFVDFENHEDAVKAVEALNDTEYKGQTLYV 296
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 77/182 (42%), Gaps = 32/182 (17%)
Query: 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAE 102
E + ++ G + ++ L +F G V D + S G+A++ +D +
Sbjct: 39 ENVTASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGK 98
Query: 103 DAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYH 162
AI L+ T KGR R+ W++ + +R+ G G+ +F+ N P
Sbjct: 99 TAIEKLNYTAI--KGRPCRIMWSQRDPSMRKKGSGN--------------IFIKNLHP-D 141
Query: 163 TRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
+ L F +G I+S +I + F FV +E +E A A+DA N L + +
Sbjct: 142 IDNKTLYETFSVFGNILSCKIANDETGKSKGFGFVHFENEEAAREAIDAINGMLLNGQEV 201
Query: 216 SV 217
V
Sbjct: 202 YV 203
>gi|383848005|ref|XP_003699643.1| PREDICTED: serine/arginine-rich splicing factor 1-like [Megachile
rotundata]
Length = 248
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 104/224 (46%), Gaps = 25/224 (11%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG----FAFIYMDDERDAEDAIRGLDRTE 112
I+ GN D R D++ LF ++GKV VD+K+ FAF+ DD RDAEDA+ D +
Sbjct: 11 IYVGNLPPDIRTKDIQDLFYKFGKVIFVDLKNRRGPPFAFVEFDDPRDAEDAVHARDGYD 70
Query: 113 FGRKGRRLRVEW------TKHERGIRRPG-GGSSARRPSTNTRP-------SKTLFVINF 158
+ G RLRVE+ + + RG R G G R +N+R S+ ++
Sbjct: 71 Y--DGYRLRVEFPRGGGPSNNFRGGRGAGDSGRGGRGEMSNSRGRGPPARRSQYRVLVTG 128
Query: 159 DPYHTRTRDLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKLTDRVISV 217
P +DL+ H G + + ++ V++ ED A+ + S+ V
Sbjct: 129 LPPSGSWQDLKDHMREAGDVCFADVYKDGTGVVEFLRYEDMKYAVKKLDDSRFRSHEGEV 188
Query: 218 EYAVRDDDDRRNGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDY 261
Y +R +D +G DR R +RGR S S R RGSP Y
Sbjct: 189 AY-IRVKEDHSSG---DRGRSEDRERGRSHSRSYSPRRRGSPTY 228
>gi|112983834|ref|NP_001037293.1| RNA-binding protein lark [Bombyx mori]
gi|57236850|gb|AAW48898.1| lark-PA [Bombyx mori]
Length = 343
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 18/165 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
IF GN ++DL LF +YG V D+ + F++M++E+ +AI+ L+
Sbjct: 9 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELV--H 66
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYG 176
G+ +++E K S + PST P+ +FV N TR ++ F+ +G
Sbjct: 67 GQAIKIEAAK------------SRKAPST---PTTKIFVGNLTD-KTRAPEVRELFQKFG 110
Query: 177 KIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
++ I RN+ FV + D A+ N + + + V+ +
Sbjct: 111 TVVECDIVRNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLST 155
>gi|268563921|ref|XP_002647045.1| C. briggsae CBR-RSP-3 protein [Caenorhabditis briggsae]
Length = 234
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 80/161 (49%), Gaps = 18/161 (11%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG----FAFIYMDDERDAEDAIRGLDR 110
+ ++ GN D R ++E +F +YG++ +D+KSG FAFI +D RDAEDA+R D
Sbjct: 8 QKVYVGNLPADVRDKEVEDIFHKYGRIKYIDVKSGRGPAFAFIEFEDNRDAEDAVRARDG 67
Query: 111 TEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLER 170
EF GRR+RVE+T RG+ G + + R T + T+ +DL+
Sbjct: 68 YEF--DGRRIRVEFT---RGVGPRGPVAQSTRKEVATVEAVTI-----VEDVVVVKDLKD 117
Query: 171 HFEPYGKIISVRIRRN----FAFVQYEVQEDATRALDATNM 207
H G + + R+ F +Y+ + A R LD T
Sbjct: 118 HMREAGDVCYADVARDGTGVVEFTRYDDVKYAIRKLDDTKF 158
>gi|380021805|ref|XP_003694747.1| PREDICTED: RNA-binding protein lark-like [Apis florea]
Length = 351
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 18/165 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
IF GN +D++ LF +YGKV D+ + F++M++E +AI+ L+
Sbjct: 12 IFIGNLADKTTNADIKPLFEKYGKVVECDVVKNYGFVHMENEEAGRNAIQNLNGHIV--H 69
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYG 176
G+ ++ E K +G P+T P+ +FV N +T+ + F YG
Sbjct: 70 GQEIKCEAAKSRKG------------PNT---PTTKIFVGNLTD-NTKAPQVRELFAKYG 113
Query: 177 KIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
++ I RN+ FV E D A+ N + + + V+ +
Sbjct: 114 TVVECDIVRNYGFVHLEATGDVNDAIKELNGRMVDGQAMKVQIST 158
>gi|308459677|ref|XP_003092154.1| hypothetical protein CRE_20061 [Caenorhabditis remanei]
gi|308254084|gb|EFO98036.1| hypothetical protein CRE_20061 [Caenorhabditis remanei]
Length = 336
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 84/304 (27%), Positives = 125/304 (41%), Gaps = 58/304 (19%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS------GFAFIYMDDERDAEDAIRGLDR 110
++ GN D R+ ++E +F +YG++ +D+KS FAFI DD RDA++A+R D
Sbjct: 6 VYVGNLPSDVREKEIEDIFHKYGEIRNIDIKSRSRDSPAFAFIQFDDRRDAKEAVRACDG 65
Query: 111 TEFGRKGRRLRVEW-----TKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRT 165
EF G+RLRVE+ + G GS R + S ++ P
Sbjct: 66 YEF--DGKRLRVEFPRGKGPRGPGGRPTRDNGSRFGRNGGPPKRSNYRLIVEGLPRSGSW 123
Query: 166 RDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDD 225
+D++ H + G+I + V++E E+ A+ + +K Y +R +
Sbjct: 124 QDIKDHLKQAGEICYANVHNGEGVVEFERYENLEYAIRKYDDTKFRSHKGETAY-IRLKE 182
Query: 226 DRRNGHSPDRNRDRSPDR----------------------------GRRRSPSPY----- 252
D+ ++ R RS R + RS SP
Sbjct: 183 DKSEYAKENKRRTRSISRSKSPNRGRCSRSSSRSKSSIRGRRTGSASKSRSRSPVSRQHR 242
Query: 253 -RRERGSPDYGRGSSRSPYRRER------GSPDYGRVRSPSPYR---RDRGSPDYGRNS- 301
R E GSP SRSP R+R G+P RS SP + RDR GR S
Sbjct: 243 DRSESGSPARRVSRSRSPISRQRRARSESGTPARRATRSRSPVKRQSRDRSVSSVGRASR 302
Query: 302 SRSP 305
SRSP
Sbjct: 303 SRSP 306
>gi|380024306|ref|XP_003695942.1| PREDICTED: LOW QUALITY PROTEIN: serine/arginine-rich splicing
factor 1-like [Apis florea]
Length = 248
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 104/224 (46%), Gaps = 25/224 (11%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG----FAFIYMDDERDAEDAIRGLDRTE 112
I+ GN D R D++ LF ++GKV VD+K+ FAF+ DD RDAEDA+ D +
Sbjct: 11 IYVGNLPPDIRTKDIQDLFYKFGKVIFVDLKNRRGPPFAFVEFDDPRDAEDAVHARDGYD 70
Query: 113 FGRKGRRLRVEW------TKHERGIRRPG-GGSSARRPSTNTRP-------SKTLFVINF 158
+ G RLRVE+ + + RG R G G R +N+R S+ ++
Sbjct: 71 Y--DGYRLRVEFPRGGGPSNNFRGGRGAGDSGRGGRGEMSNSRGRGPPARRSQYRVLVTG 128
Query: 159 DPYHTRTRDLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKLTDRVISV 217
P +DL+ H G + + ++ V++ ED A+ + S+ V
Sbjct: 129 LPPSGSWQDLKDHMREAGDVCFADVFKDGTGVVEFLRYEDMKYAVKKXDDSRFRSHEGEV 188
Query: 218 EYAVRDDDDRRNGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDY 261
Y +R +D +G DR R +RGR S S R RGSP Y
Sbjct: 189 AY-IRVKEDHNSG---DRGRSEDRERGRSHSRSYSPRRRGSPTY 228
>gi|170046272|ref|XP_001850696.1| RNA binding motif protein 4,lark [Culex quinquefasciatus]
gi|167869088|gb|EDS32471.1| RNA binding motif protein 4,lark [Culex quinquefasciatus]
Length = 332
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 18/165 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
+F GN + + SDL LF +YG V D+ + F++M+ E DAI+ LD +
Sbjct: 9 LFIGNVDEKTQPSDLRPLFEKYGTVVECDVVKNYGFVHMETEDMGRDAIQNLD--GYVVN 66
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYG 176
G+ ++VE ++ R P++NT +FV N TR + F+ YG
Sbjct: 67 GKAIKVEAARNRRA------------PNSNT---TKIFVGNLTDV-TRAPQVRELFQKYG 110
Query: 177 KIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
++ I RN+ FV + Q D A+ N + + + V+ +
Sbjct: 111 TVVECDIVRNYGFVHLDPQGDVNEAIRELNGMMVDGQPMKVQVST 155
>gi|312074319|ref|XP_003139917.1| arginine/serine-rich splicing factor 1B [Loa loa]
gi|307764919|gb|EFO24153.1| arginine/serine-rich splicing factor 1B [Loa loa]
Length = 266
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 94/195 (48%), Gaps = 17/195 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG----FAFIYMDDERDAEDAIRGLDRTE 112
+F GN D +Q DLE +F +YG+++ +D+K FAF+ DD RDA DA+ G D +
Sbjct: 9 VFVGNLPSDVKQRDLEDIFYKYGRINFIDIKFTRDVPFAFVEFDDPRDARDAVHGRDGYD 68
Query: 113 FGRKGRRLRVEWTKHERGIRRPGG---GSSARRPSTNTRPSKTLF--VINFDPYHTRTRD 167
F G R+RVE T+ G G R P P ++ + VI+ P +D
Sbjct: 69 F--DGCRIRVELTRGVGPRGPGGRPLYGPDPRSPRHGPPPRRSGYRVVISGLPDTGSWQD 126
Query: 168 LERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKLTDRVISVEYA-VRDDD 225
L+ H G+I + R+ V+Y ED AL + +K V Y VR+
Sbjct: 127 LKDHMRDAGEICYADVFRDGTGVVEYTNYEDMKYALRKLDDTKFKSHEGEVTYIRVRE-- 184
Query: 226 DRRNGHSPDRNRDRS 240
N +SP+R+R RS
Sbjct: 185 --ANINSPNRSRSRS 197
>gi|198421230|ref|XP_002126938.1| PREDICTED: similar to splicing factor, arginine/serine-rich 4
isoform 2 [Ciona intestinalis]
Length = 280
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 87/182 (47%), Gaps = 26/182 (14%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G + AR++D+E FR YGK++ + +K+GF F+ DDERDA+DAI L+
Sbjct: 7 VYIGRLSHRARENDVEHFFRGYGKINDLMLKNGFGFVIFDDERDADDAIHDLNGKSLC-- 64
Query: 117 GRRLRVEWTKHERGIRRPGGGSSAR----------------RPSTNTRPSKT--LFVINF 158
G R+ +E K R PGG R ST P+ L V N
Sbjct: 65 GERVMLEIAKGTP--RGPGGDRRESSSRRSSSSSYYQQQQPRSSTKGIPNHGYRLIVENL 122
Query: 159 DPYHTRTRDLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
T +DL+ + G+++ + R RRN V++ +++ A++ N +++ R I
Sbjct: 123 SSRVT-WQDLKDYMRQCGEVVYADANRYRRNEGVVEFSSRKEMKYAIEKLNGTEINGRHI 181
Query: 216 SV 217
+
Sbjct: 182 KL 183
>gi|426328680|ref|XP_004025378.1| PREDICTED: uncharacterized protein LOC101134512, partial [Gorilla
gorilla gorilla]
Length = 434
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 20/159 (12%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 2 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLC-- 59
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYG 176
G R+ VE H RG RR G S R ++ SK + + ++ + H
Sbjct: 60 GERVIVE---HARGPRRDGSYGSGR-----SKHSKGILLSDYMRQAGEVTYADAH----- 106
Query: 177 KIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
+ R+N +++ D RAL+ + +++ R I
Sbjct: 107 -----KGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 140
>gi|17647581|ref|NP_523957.1| lark, isoform A [Drosophila melanogaster]
gi|24659966|ref|NP_729237.1| lark, isoform B [Drosophila melanogaster]
gi|24659971|ref|NP_729238.1| lark, isoform C [Drosophila melanogaster]
gi|24659976|ref|NP_729239.1| lark, isoform D [Drosophila melanogaster]
gi|24659981|ref|NP_729240.1| lark, isoform E [Drosophila melanogaster]
gi|62510825|sp|Q94901.1|LARK_DROME RecName: Full=RNA-binding protein lark
gi|1518654|gb|AAB07067.1| RNA-binding protein lark [Drosophila melanogaster]
gi|7295256|gb|AAF50578.1| lark, isoform A [Drosophila melanogaster]
gi|16769574|gb|AAL29006.1| LD40792p [Drosophila melanogaster]
gi|23094008|gb|AAN12053.1| lark, isoform B [Drosophila melanogaster]
gi|23094009|gb|AAN12054.1| lark, isoform C [Drosophila melanogaster]
gi|23094010|gb|AAN12055.1| lark, isoform D [Drosophila melanogaster]
gi|23094011|gb|AAN12056.1| lark, isoform E [Drosophila melanogaster]
gi|220946850|gb|ACL85968.1| lark-PA [synthetic construct]
gi|220956448|gb|ACL90767.1| lark-PA [synthetic construct]
Length = 352
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 18/165 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
+F GN + + ++L LF +YG V D+ + F++M+ E+ DAI+ L+
Sbjct: 9 LFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLN------- 61
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYG 176
+T +E I+ S R P+T P+ +FV N TR ++ F+ YG
Sbjct: 62 ------GYTLNEFAIKVE-AAKSRRAPNT---PTTKIFVGNLTD-KTRAPEVRELFQKYG 110
Query: 177 KIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
++ I RN+ FV + D A+ N + + + V+ +
Sbjct: 111 TVVECDIVRNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVST 155
>gi|125977312|ref|XP_001352689.1| GA21193 [Drosophila pseudoobscura pseudoobscura]
gi|54641438|gb|EAL30188.1| GA21193 [Drosophila pseudoobscura pseudoobscura]
Length = 352
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 18/165 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
+F GN + + ++L LF +YG V D+ + F++M+ E+ DAI+ L+ +
Sbjct: 9 LFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLN--GYVLN 66
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYG 176
++VE K S R P+T P+ +FV N TR ++ F+ YG
Sbjct: 67 DNAIKVEAAK------------SRRAPNT---PTTKIFVGNLTD-KTRAPEVRELFQKYG 110
Query: 177 KIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
++ I RN+ FV + D A+ N + + + V+ +
Sbjct: 111 TVVECDIVRNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVST 155
>gi|157138308|ref|XP_001657237.1| RNA binding motif protein 4,lark [Aedes aegypti]
gi|108869514|gb|EAT33739.1| AAEL013982-PA [Aedes aegypti]
Length = 330
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 18/165 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
+F GN + + SDL LF +YG V D+ + F++M++E DAI+ LD +
Sbjct: 9 LFIGNVDEKTQPSDLRPLFEKYGTVVECDVVKNYGFVHMENEDQGRDAIQNLD--GYVVN 66
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYG 176
G+ ++VE ++ R P+ NT +FV N TR + F+ YG
Sbjct: 67 GKAIKVEAARNRRA------------PNANT---TKIFVGNLTDV-TRAPQVRELFQKYG 110
Query: 177 KIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
++ I RN+ FV + D A+ N + + + V+ +
Sbjct: 111 TVVECDIVRNYGFVHLDPTGDVNEAIRELNGMMVDGQPMKVQVST 155
>gi|28302297|gb|AAH46684.1| LOC398498 protein, partial [Xenopus laevis]
Length = 531
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 87/189 (46%), Gaps = 32/189 (16%)
Query: 39 RRSHS-QLSIAAFEAMM------RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFA 91
RRS S ++ +AA+ +M IF GN + + ++ LF RYG V + +A
Sbjct: 45 RRSLSLRVVVAAYSRLMPHSEERMKIFVGNIDERTSEGEVTALFERYGAVLNCAVMRQYA 104
Query: 92 FIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSK 151
F++M R+A A+ L+ E G+++ VE +K RP
Sbjct: 105 FVHMRGTREATKAVEELNGREL--NGKKMLVELSK--------------------PRPQN 142
Query: 152 T--LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSK 209
T +FV N ++ + FE YG+++ I +++AFV + +A A++A N
Sbjct: 143 TWKIFVGNVSS-SCEAAEIRKIFEEYGRVLECDIVKDYAFVHMTRESEARAAIEALNGKD 201
Query: 210 LTDRVISVE 218
+ + I+VE
Sbjct: 202 IKGKRINVE 210
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
IF GN +++ ++F YG+V D+ +AF++M E +A AI L+ + K
Sbjct: 146 IFVGNVSSSCEAAEIRKIFEEYGRVLECDIVKDYAFVHMTRESEARAAIEALNGKDI--K 203
Query: 117 GRRLRVEWT-KHERGIRRPGGGSSARRP 143
G+R+ VE + K +R GG S RRP
Sbjct: 204 GKRINVEMSNKVQRSGGANGGSHSRRRP 231
>gi|307187784|gb|EFN72750.1| RNA-binding protein lark [Camponotus floridanus]
Length = 331
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 18/165 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
IF GN +D++ LF +YGKV D+ + F++M++E +AI+ L+
Sbjct: 12 IFIGNLADKTSNADIKPLFEKYGKVVECDVVKNYGFVHMENEEAGRNAIQNLNGHMV--H 69
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYG 176
G+ ++ E K +G P+T P+ +FV N +T+ + F YG
Sbjct: 70 GQPIKCEAAKSRKG------------PNT---PTTKIFVGNLTD-NTKAPQVRELFAKYG 113
Query: 177 KIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
++ I RN+ FV E D A+ N + + + V+ +
Sbjct: 114 TVVECDIVRNYGFVHLEATGDVNDAIKELNGQIVDGQPMKVQIST 158
>gi|440899388|gb|ELR50691.1| RNA-binding protein 14 [Bos grunniens mutus]
Length = 669
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 77/169 (45%), Gaps = 25/169 (14%)
Query: 57 IFCGNFE-YDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGR 115
IF GN + D +L LF YG V + FAF++M + A AI L E R
Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHEL-R 61
Query: 116 KGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKT--LFVINFDPYHTRTRDLERHFE 173
GR L VE + RP RP T +FV N T +++L R FE
Sbjct: 62 PGRALVVE-------MSRP-------------RPLNTWKIFVGNVSAACT-SQELRRLFE 100
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 222
G++I + +++AFV E + DA A+ N ++ + I+VE + +
Sbjct: 101 RRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 149
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
IF GN +L RLF R G+V D+ +AF++M+ E DA+ AI L+ E K
Sbjct: 81 IFVGNVSAACTSQELRRLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEV--K 138
Query: 117 GRRLRVEW-TKHER---GI--------RRPGGGSSA 140
G+R+ VE TK ++ G+ ++PG G +A
Sbjct: 139 GKRINVELSTKGQKKGPGLAIQSGDKTKKPGAGDTA 174
>gi|148222587|ref|NP_001079614.1| RNA binding motif protein 14 [Xenopus laevis]
gi|80477004|gb|AAI08787.1| MGC52864 protein [Xenopus laevis]
Length = 467
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 124/280 (44%), Gaps = 50/280 (17%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
IF GN + Q ++ LF RYG V + +AF++M +A A+ L+ E
Sbjct: 10 IFVGNVDDRTTQEEITELFERYGTVVNCAVMKQYAFVHMRGAEEATKAVEDLNGREL--N 67
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKT--LFVINFDPYHTRTRDLERHFEP 174
G+++ VE +K RP T +FV N ++ + FE
Sbjct: 68 GKKMLVELSK--------------------PRPQNTWKIFVGNVSS-SCEGSEIRKIFEE 106
Query: 175 YGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHS-- 232
YG+++ I +++AFV + +A A++A N ++ + I+VE + + +R+G S
Sbjct: 107 YGRVVECDIVKDYAFVHMTRESEARAAIEALNGKEIKGKRINVEMSHK---VQRSGTSNG 163
Query: 233 PDRNRDRSPDRGRRRSPSPYRRERGS-PDYGRGSSRSPYRRERGSPDYGRV-------RS 284
R R+ DR +S Y R + Y + +S Y ER +P+ R R
Sbjct: 164 SSHGRRRTDDREAPQSRESYNHRRATEAAYASYALKSGY--ERYAPESSRYDLYESRPRP 221
Query: 285 PSP--YRRDRGSP----DYGRNSS---RSPYKKERAAIGH 315
PSP Y RDR SP DY + + S Y+ E A G+
Sbjct: 222 PSPLYYARDR-SPMRRSDYALSQTAALASKYRSELAGYGN 260
>gi|227204393|dbj|BAH57048.1| AT3G61860 [Arabidopsis thaliana]
Length = 71
Score = 68.9 bits (167), Expect = 5e-09, Method: Composition-based stats.
Identities = 29/36 (80%), Positives = 33/36 (91%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG 89
MRP+F GNFEY+ RQSDLERLF +YG+VDRVDMKSG
Sbjct: 1 MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSG 36
>gi|28175406|gb|AAH45210.1| MGC52864 protein [Xenopus laevis]
Length = 460
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 124/280 (44%), Gaps = 50/280 (17%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
IF GN + Q ++ LF RYG V + +AF++M +A A+ L+ E
Sbjct: 3 IFVGNVDDRTTQEEITELFERYGTVVNCAVMKQYAFVHMRGAEEATKAVEDLNGREL--N 60
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKT--LFVINFDPYHTRTRDLERHFEP 174
G+++ VE +K RP T +FV N ++ + FE
Sbjct: 61 GKKMLVELSK--------------------PRPQNTWKIFVGNVSS-SCEGSEIRKIFEE 99
Query: 175 YGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHS-- 232
YG+++ I +++AFV + +A A++A N ++ + I+VE + + +R+G S
Sbjct: 100 YGRVVECDIVKDYAFVHMTRESEARAAIEALNGKEIKGKRINVEMSHK---VQRSGTSNG 156
Query: 233 PDRNRDRSPDRGRRRSPSPYRRERGS-PDYGRGSSRSPYRRERGSPDYGRV-------RS 284
R R+ DR +S Y R + Y + +S Y ER +P+ R R
Sbjct: 157 SSHGRRRTDDREAPQSRESYNHRRATEAAYASYALKSGY--ERYAPESSRYDLYESRPRP 214
Query: 285 PSP--YRRDRGSP----DYGRNSS---RSPYKKERAAIGH 315
PSP Y RDR SP DY + + S Y+ E A G+
Sbjct: 215 PSPLYYARDR-SPMRRSDYALSQTAALASKYRSELAGYGN 253
>gi|148908052|gb|ABR17145.1| unknown [Picea sitchensis]
Length = 263
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 89/196 (45%), Gaps = 34/196 (17%)
Query: 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRG 107
M R ++ GN D R+ ++E LF +YG++ VD+K G+ FI +D RDAEDAIRG
Sbjct: 5 MTRTLYVGNLPGDVREGEIEDLFYKYGRIIDVDLKVPPRPPGYCFIEFEDARDAEDAIRG 64
Query: 108 LDRTEFGRKGRRLRVEWTKHER----GIRRPGGGSSARRPSTN----TRPSKTLFVINFD 159
D F G R+RVE+ R + RP SS TR + ++
Sbjct: 65 RDGYNF--DGHRIRVEFAHGGRRTSSSLGRPSSYSSIAGGRGGRGGVTRHTDYRVLVTGL 122
Query: 160 PYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATR-ALDATNMSKLTDRVISVE 218
P +DL+ H G + + R+ + TR +D TN+ + +
Sbjct: 123 PSSASWQDLKDHMRRAGDVCYAEVFRD---------SNGTRGTVDYTNLEDM-------K 166
Query: 219 YAVR--DDDDRRNGHS 232
YA+R DD + RN S
Sbjct: 167 YAIRKLDDSEFRNAFS 182
>gi|339522327|gb|AEJ84328.1| RNA-binding protein 4 [Capra hircus]
Length = 143
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 71/149 (47%), Gaps = 21/149 (14%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ F++ +D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNHGFVHREDKPAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + V G+S + T+T+ L V N P T ++L FE
Sbjct: 59 KLHGVNINV--------------GASTNKSKTSTK----LHVGNISPTCTN-KELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRAL 202
YG +I I +++AFV E EDA A+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAI 128
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 60 GNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF
Sbjct: 83 GNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
>gi|57164147|ref|NP_001009255.1| serine/arginine-rich splicing factor 9 [Rattus norvegicus]
gi|92058728|sp|Q5PPI1.1|SRSF9_RAT RecName: Full=Serine/arginine-rich splicing factor 9; AltName:
Full=Splicing factor, arginine/serine-rich 9
gi|56388745|gb|AAH87684.1| Splicing factor, arginine/serine rich 9 [Rattus norvegicus]
gi|149063569|gb|EDM13892.1| splicing factor, arginine/serine rich 9, isoform CRA_b [Rattus
norvegicus]
Length = 221
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 82/160 (51%), Gaps = 11/160 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R+ DLE LF +YG++ +++K+ FAF+ +D RDAEDAI G +
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERH 171
++G+ RLRVE+ + G GG A R TR S +++ P +DL+ H
Sbjct: 76 DYGQC--RLRVEFPRAYGG---RGGWPRASRNGPPTRRSDFRVLVSGLPPSGSWQDLKDH 130
Query: 172 FEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
G + ++++ V+Y +ED AL + +K
Sbjct: 131 MREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 170
>gi|308459689|ref|XP_003092160.1| hypothetical protein CRE_20046 [Caenorhabditis remanei]
gi|308254090|gb|EFO98042.1| hypothetical protein CRE_20046 [Caenorhabditis remanei]
Length = 333
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 122/284 (42%), Gaps = 27/284 (9%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS------GFAFIYMDDERDAEDAIRGLDR 110
++ GN D R+ ++E +F +YG++ +D+KS FAFI DD RDA++A+R D
Sbjct: 6 VYVGNLPSDVREKEIEDIFHKYGEIRNIDIKSRSRDSPAFAFIQFDDRRDAKEAVRARDG 65
Query: 111 TEFGRKGRRLRVEW-----TKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRT 165
EF G+RLRVE+ + G GS R + S ++ P
Sbjct: 66 YEF--DGKRLRVEFPRGQGPRGPGGRPTRDNGSRFGRNGGPPKRSNYRLIVEGLPRSGSW 123
Query: 166 RDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDD 225
+D++ H + G+I + V++E ED A + +K Y +R +
Sbjct: 124 QDIKDHLKQAGEICYANVHNGEGVVEFERYEDLEYAFRKYDDTKFRSHKGETAY-IRLKE 182
Query: 226 DRRNGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSP 285
D+ ++ R RS RS SP R S R GS R RSP
Sbjct: 183 DKSEYAKENKRRTRSIS----RSKSPIRGRSSSRSKSSIRGRRT-----GSASKSRSRSP 233
Query: 286 -SPYRRDR---GSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYR 325
S + RDR GSP + SRSP ++R A P+R R
Sbjct: 234 VSRHHRDRSESGSPARRVSRSRSPISRQRPARSESGTPARRATR 277
>gi|50415109|gb|AAH77356.1| LOC398498 protein [Xenopus laevis]
Length = 471
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 25/164 (15%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
IF GN + + ++ LF RYG V + +AF++M R+A A+ L+ E
Sbjct: 10 IFVGNIDERTSEGEVTALFERYGAVLNCAVMRQYAFVHMRGTREATKAVEELNGREL--N 67
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKT--LFVINFDPYHTRTRDLERHFEP 174
G+++ VE +K RP T +FV N ++ + FE
Sbjct: 68 GKKMLVELSK--------------------PRPQNTWKIFVGNVSS-SCEAAEIRKIFEE 106
Query: 175 YGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG+++ I +++AFV + +A A++A N + + I+VE
Sbjct: 107 YGRVLECDIVKDYAFVHMTRESEARAAIEALNGKDIKGKRINVE 150
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
IF GN +++ ++F YG+V D+ +AF++M E +A AI L+ + K
Sbjct: 86 IFVGNVSSSCEAAEIRKIFEEYGRVLECDIVKDYAFVHMTRESEARAAIEALNGKDI--K 143
Query: 117 GRRLRVEWT-KHERGIRRPGGGSSARRP 143
G+R+ VE + K +R GG S RRP
Sbjct: 144 GKRINVEMSNKVQRSGGANGGSHSRRRP 171
>gi|328767259|gb|EGF77309.1| hypothetical protein BATDEDRAFT_32353 [Batrachochytrium
dendrobatidis JAM81]
Length = 179
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 51/83 (61%), Gaps = 6/83 (7%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG----FAFIYMDDERDAEDAIRGLDRTE 112
+F G DAR SDLE +FR+YGK+ R D+K G F F+ +D+RDAE+A++ TE
Sbjct: 2 LFIGRVPEDARSSDLEDIFRKYGKIIRCDVKHGASVSFGFVEYEDKRDAEEAVKAGQETE 61
Query: 113 FGRKGRRLRVEWTKHERGIRRPG 135
F G ++ VEW K G RR G
Sbjct: 62 FEFNGAKMYVEWAKA--GGRRGG 82
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 153 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRR----NFAFVQYEVQEDATRALDATNMS 208
+ I P R+ DLE F YGKII ++ +F FV+YE + DA A+ A +
Sbjct: 1 VLFIGRVPEDARSSDLEDIFRKYGKIIRCDVKHGASVSFGFVEYEDKRDAEEAVKAGQET 60
Query: 209 KL 210
+
Sbjct: 61 EF 62
>gi|300123677|emb|CBK24949.2| unnamed protein product [Blastocystis hominis]
Length = 325
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 20/165 (12%)
Query: 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-----SGFAFIYMDDERDAEDAIRG 107
M + ++ GN EY DL +LF ++G++ + +K + +AF+ E +A++A
Sbjct: 1 MSKRLYVGNLEYGVENDDLSKLFGQFGEITDIAIKDRGQGAVYAFVEFSKEEEADNAQSS 60
Query: 108 LDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFD--PYHTRT 165
L+ T F GR +RVE+T RG+R G S R P P +T + I P++
Sbjct: 61 LNSTHF--MGRDIRVEYT---RGLRYSTGDSIRRGP-----PRRTDYRIEVTHLPHNCSW 110
Query: 166 RDLERHFEPYGKIISVRIRRNFA---FVQYEVQEDATRALDATNM 207
+DL+ + G + IR + F+ YE + A R LD T M
Sbjct: 111 QDLKDYMSRIGPVGYCDIRHGYGVVEFIHYEDMKRAVRKLDDTKM 155
>gi|168043399|ref|XP_001774172.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674440|gb|EDQ60948.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 240
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 75/164 (45%), Gaps = 18/164 (10%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E +F +YG++ +D+K G+ F+ +D RDAEDAIRG D
Sbjct: 7 RTIYVGNLPGDVREREIEDIFYKYGRIVDIDLKLPPRPPGYCFLEFEDARDAEDAIRGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERG----IRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRT 165
F G RLRVE RG + R S R + R + V P
Sbjct: 67 GYNF--DGNRLRVEIAHGGRGPPPAVDRSAAESGGRAGGVSRRSEYRVMVTGL-PSSASW 123
Query: 166 RDLERHFEPYGKIISVRIRRNFA------FVQYEVQEDATRALD 203
+DL+ H G + ++ R+ F Y+ + A R LD
Sbjct: 124 QDLKDHMRRAGDVCFAQVFRDAGTMGIVDFTNYDDMKYAIRKLD 167
>gi|260790117|ref|XP_002590090.1| hypothetical protein BRAFLDRAFT_83361 [Branchiostoma floridae]
gi|229275278|gb|EEN46101.1| hypothetical protein BRAFLDRAFT_83361 [Branchiostoma floridae]
Length = 326
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 55/87 (63%), Gaps = 5/87 (5%)
Query: 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 112
M ++ GN AR+ DL+ LF ++GKV+ D+ + F++MD+E+DA DAI+ L TE
Sbjct: 19 MTTKLYVGNVPQPARKKDLQDLFEKFGKVNECDIIKNYGFVHMDNEQDANDAIKALTNTE 78
Query: 113 FGRKGRRLRVEWTKHERGIR-RPGGGS 138
+ G R+ VE +K + +R +PG GS
Sbjct: 79 W--MGTRITVEMSKSK--VRTQPGQGS 101
Score = 44.7 bits (104), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 142 RPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRA 201
R S+ + L+V N P R +DL+ FE +GK+ I +N+ FV + ++DA A
Sbjct: 12 RNSSKGEMTTKLYVGNV-PQPARKKDLQDLFEKFGKVNECDIIKNYGFVHMDNEQDANDA 70
Query: 202 LDATNMSKLTDRVISVEYA 220
+ A ++ I+VE +
Sbjct: 71 IKALTNTEWMGTRITVEMS 89
>gi|363753804|ref|XP_003647118.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890754|gb|AET40301.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
Length = 580
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 20/202 (9%)
Query: 44 QLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-------GFAFIYMD 96
Q + +A I+ N + + Q + E+LF +YGK+ ++ GF FI +
Sbjct: 208 QSKLEEVKAKFTNIYVKNIDLETSQEEFEQLFSKYGKITSAVLEKDSEGKLRGFGFINFE 267
Query: 97 DERDAEDAIRGLDRTEFGRKGRRLRV--EWTKHERGIRRPGGGSSARRPSTNTRPSKTLF 154
D A A+ L+ ++F +G+ L V KHER +AR LF
Sbjct: 268 DHSTAARAVDELNESDF--RGQTLYVGRAQKKHERQQELKKQYETARLEKLAKYQGVNLF 325
Query: 155 VINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNM 207
+ N D L+ F P+G I SV++ R F FV + E+AT+A+ N
Sbjct: 326 IKNLDD-SIDDEKLKDEFAPFGTITSVKVMKDEAGSSRGFGFVCFSTPEEATKAITEKNQ 384
Query: 208 SKLTDRVISVEYAVRDDDDRRN 229
+ + + V A R + RRN
Sbjct: 385 QLVAGKPLYVAIAQR-KEVRRN 405
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 76/184 (41%), Gaps = 32/184 (17%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRV--------DMKSGFAFIYMDDERDAEDAIRGL 108
++ G + ++ L +F G V + + G+A++ D AI L
Sbjct: 40 LYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGRKAIEQL 99
Query: 109 DRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDL 168
+ T KG+ R+ W++ + +R+ G G+ +++ N P + L
Sbjct: 100 NYTLI--KGKPCRIMWSQRDPSLRKKGSGN--------------IYIKNLHP-AIDNKSL 142
Query: 169 ERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
F +G I+S ++ R F FV +E + DA A++A N + D+ + V + V
Sbjct: 143 HETFSTFGNILSCKVATDDNGVSRGFGFVHFENESDARDAIEAVNGMLMNDQEVYVAWHV 202
Query: 222 RDDD 225
D
Sbjct: 203 SKKD 206
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 66/175 (37%), Gaps = 25/175 (14%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-------GFAFIYMDDERDAEDAIRGLD 109
I+ N L F +G + + + GF F++ ++E DA DAI ++
Sbjct: 128 IYIKNLHPAIDNKSLHETFSTFGNILSCKVATDDNGVSRGFGFVHFENESDARDAIEAVN 187
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLE 169
+ + V W H R + TN ++V N D T + E
Sbjct: 188 GMLM--NDQEVYVAW--HVSKKDRQSKLEEVKAKFTN------IYVKNID-LETSQEEFE 236
Query: 170 RHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
+ F YGKI S + R F F+ +E A RA+D N S + + V
Sbjct: 237 QLFSKYGKITSAVLEKDSEGKLRGFGFINFEDHSTAARAVDELNESDFRGQTLYV 291
>gi|298710995|emb|CBJ32302.1| arginine/serine-rich splicing factor 6 [Ectocarpus siliculosus]
Length = 235
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 82/169 (48%), Gaps = 16/169 (9%)
Query: 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 112
M I+ G+ R DL+R F RYG+++++D++ GFAFI +D RDAEDA+ +D E
Sbjct: 1 MTNRIYIGHLSPHTRDRDLDRAFGRYGRIEKIDVRMGFAFIEFEDRRDAEDAVAEMDGRE 60
Query: 113 FGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHF 172
F G R+ V+ PG G P TR ++ + HT +DL+
Sbjct: 61 F--DGARIVVQ----------PGRGHRPNGPKFATRRTEHRITVEGLDSHTSWQDLKDFG 108
Query: 173 EPYGKI----ISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
G++ + R R + V+Y ++D A+ + ++L + I V
Sbjct: 109 RQAGQVLYSDVFFRQGRRWGVVEYVSRDDMKAAIRTLDDTRLGGKYIRV 157
>gi|410911522|ref|XP_003969239.1| PREDICTED: uncharacterized protein LOC101080136 isoform 1 [Takifugu
rubripes]
Length = 374
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 89/172 (51%), Gaps = 15/172 (8%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M ++ G Y AR++D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ E
Sbjct: 1 MSRVYIGRLSYRARENDVERFFKGYGKILEVDLKNGYGFVEFDDPRDADDAVYDLNGKEL 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTR-----PSKTLFVINFDPYHTRT--R 166
G R+ VE H +G RR GG S R P +T + + + +R +
Sbjct: 61 C--GERVIVE---HTKGPRRDGGYSGRSGYGRWGRDRYGPPIRTDYRLIVENLSSRCSWQ 115
Query: 167 DLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
DL+ + G++ + + R+N +++ D RAL+ + +++ R I
Sbjct: 116 DLKDYMRQAGEVTYADTHKGRKNEGVIEFRQYSDMKRALEKLDGTEVNGRKI 167
>gi|383848340|ref|XP_003699809.1| PREDICTED: RNA-binding protein lark-like [Megachile rotundata]
Length = 351
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 18/165 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
IF GN +D++ LF +YGKV D+ + F++M++E +AI+ L+
Sbjct: 12 IFIGNLADKTSNADIKPLFEKYGKVVECDVVKNYGFVHMENEEAGRNAIQNLNGQIV--H 69
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYG 176
G+ ++ E K +G P+T P+ +FV N +T+ + F YG
Sbjct: 70 GQPIKCEAAKSRKG------------PNT---PTTKIFVGNLTD-NTKAPQVRELFAKYG 113
Query: 177 KIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
++ I RN+ FV E D A+ N + + + V+ +
Sbjct: 114 TVVECDIVRNYGFVHLEATGDVNDAIKELNGQMVDGQPMKVQIST 158
>gi|242007024|ref|XP_002424342.1| Arginine/serine-rich-splicing factor RSP31, putative [Pediculus
humanus corporis]
gi|212507742|gb|EEB11604.1| Arginine/serine-rich-splicing factor RSP31, putative [Pediculus
humanus corporis]
Length = 326
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 18/165 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
IF GN ++D++ LF +YGKV D+ + F++M+ E DAI+ LD +
Sbjct: 12 IFVGNLSDKTTKADIQPLFEKYGKVVECDIVKNYGFVHMEHEDSGRDAIQNLD--GYLVH 69
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYG 176
G ++VE +G P T P+ +FV N +T+ + F YG
Sbjct: 70 GSSIKVEAATSRKG------------PQT---PTTKVFVGNLTD-NTKAPQVRALFAKYG 113
Query: 177 KIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
++ I RN+ FV E ++ + N L + + V+ +
Sbjct: 114 TVVECDIVRNYGFVHIESSDNVNECIRELNGYILDGQPMKVQLST 158
>gi|348525823|ref|XP_003450421.1| PREDICTED: RNA-binding protein 4B-like [Oreochromis niloticus]
Length = 347
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 24/166 (14%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M IF GN + + ++E LF +YG V +AF++M+D + A AIR L +
Sbjct: 1 MVKIFIGNLSQNTEKDEIEALFTQYGTVTECAKYKNYAFVHMEDRKSATKAIRELHLHKL 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDP-YHTRTRDLERHF 172
GR + VE ++ ST+ P K L V N + + RDL F
Sbjct: 61 --NGRPINVEPSR-----------------STDQGPVK-LHVANVEKGFDKELRDL---F 97
Query: 173 EPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG + I +NFAFV ++A AL + ++ + I V+
Sbjct: 98 LEYGTVTECSIVKNFAFVHMSNSDEAMDALQGLDNTEFQGKRIHVQ 143
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 7/68 (10%)
Query: 70 DLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 129
+L LF YG V + FAF++M + +A DA++GLD TEF +G+R+ V+ +K
Sbjct: 92 ELRDLFLEYGTVTECSIVKNFAFVHMSNSDEAMDALQGLDNTEF--QGKRIHVQISKS-- 147
Query: 130 GIRRPGGG 137
RP GG
Sbjct: 148 ---RPRGG 152
>gi|47212671|emb|CAF94152.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1550
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 89/172 (51%), Gaps = 15/172 (8%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M ++ G Y AR++D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ E
Sbjct: 1 MSRVYIGRLSYRARENDVERFFKGYGKILEVDLKNGYGFVEFDDPRDADDAVYDLNGKEL 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTR-----PSKTLFVINFDPYHTRT--R 166
G R+ VE H +G RR GG S R P +T + + + +R +
Sbjct: 61 C--GERVIVE---HTKGPRRDGGYSGRSGYGRWGRDRYGPPIRTDYRLIVENLSSRCSWQ 115
Query: 167 DLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
DL+ + G++ + + R+N +++ D RAL+ + +++ R I
Sbjct: 116 DLKDYMRQAGEVTYADTHKGRKNEGVIEFRQYSDMKRALEKLDGTEVNGRKI 167
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 161 YHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
Y R D+ER F+ YGKI+ V ++ + FV+++ DA A+ N +L + VE+
Sbjct: 11 YRARENDVERFFKGYGKILEVDLKNGYGFVEFDDPRDADDAVYDLNGKELCGERVIVEHT 70
>gi|311270880|ref|XP_001928806.2| PREDICTED: neurofilament heavy polypeptide [Sus scrofa]
Length = 1049
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 96/210 (45%), Gaps = 28/210 (13%)
Query: 229 NGHSPDRNRDRSPDRGR--RRSPSPYRRERGSPDYGRG--SSRSPYRRERGSPDYGRVRS 284
SP + +SP++ + ++ SP + E SP+ + ++SP + E SP+ +
Sbjct: 615 KAKSPVKEEAKSPEKAKSPEKAKSPVKEEAKSPEKAKSPEKAKSPVKEEAKSPEKAK--- 671
Query: 285 PSPYRRDRGSPDYGRN----------SSRSPYKKERAAIGHGRGP--SRSPYRRDRGSPE 332
SP + + SP+ ++ ++SP K+E + + P ++SP + + SPE
Sbjct: 672 -SPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPEKAKSPVKEEAKSPE 730
Query: 333 NGHGSSPSPYRKGKPSPNNGRGP--SRSPYERERPSPENGRG--GSRSPYRRERPSPDNG 388
SP ++ SP + P ++SP + E SPE + ++SP + E SP+
Sbjct: 731 KAK----SPVKEEAKSPEKAKSPEKAKSPVKEEAKSPEKAKSPEKAKSPVKEEAKSPEKA 786
Query: 389 RVPSPNSMPEPRDSPGYDGADSPINERYRS 418
+ P P + + A SP+ E +S
Sbjct: 787 KSPVKEEAKSPEKAKSPEKAKSPVKEEAKS 816
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 28/194 (14%)
Query: 229 NGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSPY 288
SP + +SP++ + SP + E SP+ + SP + E SP+ + SP
Sbjct: 573 KAKSPVKEEAKSPEKAK----SPVKEEAKSPEKAK----SPVKEEAKSPEKAK----SPV 620
Query: 289 RRDRGSPDYGRN--SSRSPYKKERAAIGHGRGP--SRSPYRRDRGSPENGHGSSPSPYRK 344
+ + SP+ ++ ++SP K+E + + P ++SP + + SPE SP ++
Sbjct: 621 KEEAKSPEKAKSPEKAKSPVKEEAKSPEKAKSPEKAKSPVKEEAKSPEKAK----SPVKE 676
Query: 345 GKPSPNNGRGPSRSPYERERPSPENGRGGSRSPYRRERPSPDNGRVPSPNSMPEPRDSPG 404
SP + SP + E SPE +SP + E SP+ + P P ++
Sbjct: 677 EAKSPEKAK----SPVKEEAKSPEKA----KSPVKEEAKSPEKAKSPEKAKSPVKEEAKS 728
Query: 405 YDGADSPINERYRS 418
+ A SP+ E +S
Sbjct: 729 PEKAKSPVKEEAKS 742
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 91/203 (44%), Gaps = 32/203 (15%)
Query: 226 DRRNGHSPDRNRDRSPDRGRRRSP----SPYRRERGSPDYGRGSSRSPYRRERGSPDYGR 281
++ SP + +SP++ +SP SP + E SP+ + SP + E SP +
Sbjct: 500 EKEEAKSPVKEEAKSPEKEEAKSPAEAKSPVKEEVKSPEKAK----SPLKEEAKSPAEAK 555
Query: 282 VRSPSPYRRDRGSPDYGRN--SSRSPYKKERAAIGHGRGP--SRSPYRRDRGSPENGHGS 337
SP + + SP ++ ++SP K+E + P ++SP + + SPE
Sbjct: 556 ----SPEKEEAKSPVEVKSPEKAKSPVKEE------AKSPEKAKSPVKEEAKSPEKAK-- 603
Query: 338 SPSPYRKGKPSPNNGRGPSRSPYERERPSPENGRG--GSRSPYRRERPSPDNGRVPSPNS 395
SP ++ SP + SP + E SPE + ++SP + E SP+ + P
Sbjct: 604 --SPVKEEAKSPEKAK----SPVKEEAKSPEKAKSPEKAKSPVKEEAKSPEKAKSPEKAK 657
Query: 396 MPEPRDSPGYDGADSPINERYRS 418
P ++ + A SP+ E +S
Sbjct: 658 SPVKEEAKSPEKAKSPVKEEAKS 680
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 87/210 (41%), Gaps = 48/210 (22%)
Query: 229 NGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSPY 288
SP + +SP++ + SP + E SP+ + SP + E SP+ + SP
Sbjct: 655 KAKSPVKEEAKSPEKAK----SPVKEEAKSPEKAK----SPVKEEAKSPEKAK----SPV 702
Query: 289 RRDRGSPDYGRN----------SSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHG-- 336
+ + SP+ ++ ++SP K ++SP + + SPE
Sbjct: 703 KEEAKSPEKAKSPEKAKSPVKEEAKSPEK------------AKSPVKEEAKSPEKAKSPE 750
Query: 337 SSPSPYRKGKPSPNNGRGP--SRSPYERERPSPENGRGGSRSPYRRERPSPDNGRVPSPN 394
+ SP ++ SP + P ++SP + E SPE +SP + E SP+ + P
Sbjct: 751 KAKSPVKEEAKSPEKAKSPEKAKSPVKEEAKSPEKA----KSPVKEEAKSPEKAKSPEKA 806
Query: 395 SMP------EPRDSPGYDGADSPINERYRS 418
P P + + A SP+ E +S
Sbjct: 807 KSPVKEEAKSPEKAKSPEKAKSPVKEEAKS 836
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 76/177 (42%), Gaps = 28/177 (15%)
Query: 250 SPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSP----SPYRRDRGSPDYGRNSSRSP 305
SP SP+ + ++SP + E SP+ +SP SP + + SP+ + SP
Sbjct: 490 SPLAEAAASPE--KEEAKSPVKEEAKSPEKEEAKSPAEAKSPVKEEVKSPEKAK----SP 543
Query: 306 YKKERAAIGHGRGP----SRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPYE 361
K+E + + P ++SP + SPE SP ++ SP +SP +
Sbjct: 544 LKEEAKSPAEAKSPEKEEAKSPV--EVKSPEKAK----SPVKEEAKSPEKA----KSPVK 593
Query: 362 RERPSPENGRGGSRSPYRRERPSPDNGRVPSPNSMPEPRDSPGYDGADSPINERYRS 418
E SPE +SP + E SP+ + P P + + A SP+ E +S
Sbjct: 594 EEAKSPEKA----KSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPEKAKSPVKEEAKS 646
>gi|221128969|ref|XP_002161622.1| PREDICTED: arginine/serine-rich-splicing factor RSP31-like [Hydra
magnipapillata]
Length = 277
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 72/147 (48%), Gaps = 26/147 (17%)
Query: 150 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSK 209
S LFV N +P R RDLE F YGKI+ +++NF F+Q+E + DA A+ N +
Sbjct: 2 SSELFVGNLNP-EVRVRDLENCFGRYGKIVRCDLKKNFGFIQFEDRRDAEIAIQKENNRR 60
Query: 210 LTDRVISVEYA--VRDDDDRRNG-------HSPDRNRDRS-----------PDRGRRRSP 249
L ++VE+A D R NG HSPDR + R P RGR RSP
Sbjct: 61 LLGSDMTVEWARGTVGDKMRGNGPPPFRKPHSPDRFQGRGGPPFISRPRSPPVRGRDRSP 120
Query: 250 SPYRRERGSPD----YGRGSSRSPYRR 272
R+R SP GRG RSP R
Sbjct: 121 ILRGRDR-SPGIRQAMGRGRERSPLGR 146
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 112
M +F GN + R DLE F RYGK+ R D+K F FI +D RDAE AI+ +
Sbjct: 1 MSSELFVGNLNPEVRVRDLENCFGRYGKIVRCDLKKNFGFIQFEDRRDAEIAIQKENNRR 60
Query: 113 FGRKGRRLRVEWTKHERGIRRPGGG 137
G + VEW + G + G G
Sbjct: 61 L--LGSDMTVEWARGTVGDKMRGNG 83
>gi|384494440|gb|EIE84931.1| hypothetical protein RO3G_09641 [Rhizopus delemar RA 99-880]
Length = 252
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 15/170 (8%)
Query: 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 112
M ++ G DA + D+ERLF+ YG + +++K+GF F+ DERDA+D +
Sbjct: 1 MSTRVYIGRLARDASKRDIERLFKNYGDIREINLKTGFGFVEFADERDAKDVVYDFHGKS 60
Query: 113 FGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN--TRPSKTLFVINFDPYHTRTRDLER 170
F G RL VE K G RR RRP N +R L V N P T +DL+
Sbjct: 61 F--LGERLIVEIAK---GTRR----HDERRPRGNDRSRSHYRLIVENIAP-GTNWQDLKD 110
Query: 171 HFEPYGKIISVRIRRN---FAFVQYEVQEDATRALDATNMSKLTDRVISV 217
G++ I R+ V++ V++D AL N +L + + +
Sbjct: 111 MMRKAGEVTFADISRDRPSEGIVEFHVRDDMEYALKKLNDRELNGQRVQL 160
>gi|218188085|gb|EEC70512.1| hypothetical protein OsI_01613 [Oryza sativa Indica Group]
Length = 447
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 76/165 (46%), Gaps = 19/165 (11%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG++ +D+K G+AF+ +D RDA+DAI G D
Sbjct: 196 RTIYVGNLPGDIREREVEDLFYKYGRILDIDLKIPPRPPGYAFVEFEDPRDADDAICGRD 255
Query: 110 RTEFGRKGRRLRVEWTKHERG----IRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRT 165
R F G RLRVE RG RP SS RR + R + V P
Sbjct: 256 RYNF--DGYRLRVELAHGGRGQSYSYDRPRSYSSGRRGGVSRRSEYRVMVTGL-PSSASW 312
Query: 166 RDLERHFEPYGKIISVRIRR----NFAFVQYEVQED---ATRALD 203
+DL+ H G + + R V Y ED A R LD
Sbjct: 313 QDLKDHMRRAGDVCFSDVYREAGATVGIVDYTTYEDMKYAIRKLD 357
>gi|157110209|ref|XP_001651001.1| arginine/serine-rich splicing factor [Aedes aegypti]
gi|108883952|gb|EAT48177.1| AAEL000769-PA [Aedes aegypti]
Length = 247
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 11/164 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G +D R+ DLER F +G++ + ++ G+AF+ DD RDAEDAI L+ +
Sbjct: 5 VYAGKLPHDTRERDLERFFEGFGRIREILLRRGYAFVEFDDYRDAEDAIYELNGAKL--L 62
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYG 176
G+R+ VE TK R P G S+ RP R L V N R+L+ + G
Sbjct: 63 GQRIVVEATK-----RPPRFGGSSNRPKPPQRTYHRLIVENLSS-RIDWRELKAYMRKAG 116
Query: 177 KIISV---RIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
+ R R N V++ + D +AL + ++L R I +
Sbjct: 117 NVTFADAHRDRMNEGVVEFASRHDMKQALKMFDDTELNGRYIRL 160
>gi|406507553|gb|AFS34620.1| lark, partial [Clunio marinus]
Length = 285
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 75/156 (48%), Gaps = 25/156 (16%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
+F GN + + + +D+ LF +YGKV D+ + F++ +E DA DA+ L+ +
Sbjct: 9 LFIGNLDENTKTNDVRPLFEKYGKVVEFDIVKNYGFVHFQNESDAXDAVANLN--GYVIN 66
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYG 176
G ++VE K S R P++NT +FV N TRT ++ FE YG
Sbjct: 67 GNAIKVENAK------------SRRAPNSNT---TKIFVGNLTE-KTRTAEVRELFEKYG 110
Query: 177 KIISVRIR--RNFAFVQYEVQE-----DATRALDAT 205
++ + RN+ FV EV + DA R L+
Sbjct: 111 TVLECDVVXCRNYGFVHLEVADNVNVNDAIRELNGM 146
>gi|148909953|gb|ABR18062.1| unknown [Picea sitchensis]
Length = 331
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 86/190 (45%), Gaps = 29/190 (15%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R ++ GN D R+ ++E LF +YG + +D+K G+ FI +D RDAEDAIRG D
Sbjct: 7 RTLYVGNLPGDIREREVEDLFYKYGPIVDIDLKIPPRPPGYCFIEFEDARDAEDAIRGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERGI-----RRPGGGSSARRPSTNTRPSKTLFVINFDPYHTR 164
F G RLRVE RG R S+ R +R S+ +++ P
Sbjct: 67 GYNF--DGNRLRVELAHGGRGQSSTNDRYSSYSSAGGRSGGVSRRSEYRVLVSGLPSSAS 124
Query: 165 TRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR-- 222
+DL+ H G + ++ R+ T +D TN + +YA+R
Sbjct: 125 WQDLKDHMRRAGDVCFSQVFRD--------SSGTTGIVDYTNYDDM-------KYAIRKL 169
Query: 223 DDDDRRNGHS 232
DD + RN S
Sbjct: 170 DDSEFRNAFS 179
>gi|30678391|ref|NP_850933.1| Pre-mRNA-splicing factor SF2 [Arabidopsis thaliana]
gi|30678398|ref|NP_563665.3| Pre-mRNA-splicing factor SF2 [Arabidopsis thaliana]
gi|3929368|sp|O22315.1|SFRS1_ARATH RecName: Full=Pre-mRNA-splicing factor SF2; AltName: Full=SR1
protein
gi|6056417|gb|AAF02881.1|AC009525_15 alternative splicing factor SF2a [Arabidopsis thaliana]
gi|2443472|gb|AAB71385.1| ASF/SF2 homolog [Arabidopsis thaliana]
gi|21554051|gb|AAM63132.1| SF2/ASF-like splicing modulator Srp30, putative [Arabidopsis
thaliana]
gi|26451794|dbj|BAC42991.1| putative ribonucleoprotein SF-2 [Arabidopsis thaliana]
gi|332189356|gb|AEE27477.1| Pre-mRNA-splicing factor SF2 [Arabidopsis thaliana]
gi|332189358|gb|AEE27479.1| Pre-mRNA-splicing factor SF2 [Arabidopsis thaliana]
Length = 303
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 88/203 (43%), Gaps = 29/203 (14%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R ++ GN D R+ ++E LF +YG V ++D+K G+AF+ DD RDAEDAI G D
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN---------------TRPSKTLF 154
+F G RLRVE G RR + +R S+
Sbjct: 67 GYDF--DGHRLRVELA---HGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRV 121
Query: 155 VINFDPYHTRTRDLERHFEPYGKIISVRIRRN----FAFVQYEVQEDATRALDATNMSKL 210
++ P +DL+ H G + ++ R+ V Y ED AL + ++
Sbjct: 122 LVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTEF 181
Query: 211 TDRVISVEYAVRDDDDRRNGHSP 233
+ + VR+ D R++ SP
Sbjct: 182 RNAFSNGYVRVREYDSRKDSRSP 204
>gi|346468507|gb|AEO34098.1| hypothetical protein [Amblyomma maculatum]
Length = 280
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 78/178 (43%), Gaps = 25/178 (14%)
Query: 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 112
M +F G+ Y R+ D++R F+ YG+V + +K+GF F+ +D RDA+DAI+ L+ E
Sbjct: 1 MTTRVFIGHLSYQVRERDVDRFFKGYGRVGDIHLKNGFGFVEFEDHRDADDAIKDLNGKE 60
Query: 113 FGRKGRRLRVEWTK-------------HERGIRRPGGGSSARRPSTNTRPSKT---LFVI 156
G R+ VE R R P G +A R S P +T L V
Sbjct: 61 L--LGERVSVELAHGSRRGPGGRIVAPGSRDWRSPPGRFNAPRESRFGPPVRTNYQLIVE 118
Query: 157 NFDPYHTRTRDLERHFEPYGKIISVRIRRN------FAFVQYEVQEDATRALDATNMS 208
N H +DL+ + G++ N F Y +A LD T++S
Sbjct: 119 NLSS-HVSWQDLKDYMRQAGEVTFTDAHSNRPNQGIVEFSNYADMRNALNKLDNTDLS 175
>gi|189233695|ref|XP_001812208.1| PREDICTED: similar to B52 CG10851-PA [Tribolium castaneum]
Length = 300
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 15/172 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
+F G Y R+ D+E+ FR+YG++ V MK+GFAF+ DD RDA+DA+ L+ E
Sbjct: 5 VFVGGLTYRVRERDIEKFFRKYGRIKEVAMKNGFAFVEFDDYRDADDAVYELNGKEL--L 62
Query: 117 GRRLRVEWTKHE-RGIRRPGGGSSARRPSTNTR-------PSKTLFVINFDPYHTRT--R 166
G R+ VE + RG + G R P++T + + + +R +
Sbjct: 63 GERVSVERARGTPRGCDQWRGSGGRGYGPPRGRSRDKYGPPTRTEYRLIVENLSSRVSWQ 122
Query: 167 DLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
DL+ + G++ + + RRN V++ D A+D + ++L R I
Sbjct: 123 DLKDYMRQAGEVTYADAHKQRRNEGVVEFASYSDMKNAIDKLDDTELNGRRI 174
Score = 45.1 bits (105), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 160 PYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 219
Y R RD+E+ F YG+I V ++ FAFV+++ DA A+ N +L +SVE
Sbjct: 11 TYRVRERDIEKFFRKYGRIKEVAMKNGFAFVEFDDYRDADDAVYELNGKELLGERVSVER 70
Query: 220 A 220
A
Sbjct: 71 A 71
>gi|328786878|ref|XP_391860.4| PREDICTED: serine/arginine-rich splicing factor 4 [Apis mellifera]
Length = 419
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 71/168 (42%), Gaps = 43/168 (25%)
Query: 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 112
M +F G Y R+ DLE+ FR+YG++ V MK+GFAF+ ++ +
Sbjct: 1 MSTRVFVGGLTYRVRERDLEKFFRKYGRIKEVAMKNGFAFVV---------SLMWFNCFF 51
Query: 113 FGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHF 172
+ G R+ V GG PY TR RDLER F
Sbjct: 52 YSMVGTRVYV-------------GGL---------------------PYGTRERDLERFF 77
Query: 173 EPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
YG+ V I+ + FV+++ DA A+ N +L I+VE A
Sbjct: 78 RGYGRFRDVLIKNGYGFVEFDDYRDADDAVYELNGKELLGERITVERA 125
>gi|350408072|ref|XP_003488292.1| PREDICTED: serine/arginine-rich splicing factor 4-like isoform 1
[Bombus impatiens]
Length = 394
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 71/168 (42%), Gaps = 43/168 (25%)
Query: 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 112
M +F G Y R+ DLE+ FR+YG++ V MK+GFAF+ ++ +
Sbjct: 1 MSTRVFVGGLTYRVRERDLEKFFRKYGRIKEVAMKNGFAFVV---------SLMWFNCFF 51
Query: 113 FGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHF 172
+ G R+ V GG PY TR RDLER F
Sbjct: 52 YSMVGTRVYV-------------GGL---------------------PYGTRERDLERFF 77
Query: 173 EPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
YG+ V I+ + FV+++ DA A+ N +L I+VE A
Sbjct: 78 RGYGRFRDVLIKNGYGFVEFDDYRDADDAVYELNGKELLGERITVERA 125
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 36 LGFRRSHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYM 95
F S + + + ++ G Y R+ DLER FR YG+ V +K+G+ F+
Sbjct: 38 FAFVVSLMWFNCFFYSMVGTRVYVGGLPYGTRERDLERFFRGYGRFRDVLIKNGYGFVEF 97
Query: 96 DDERDAEDAIRGLDRTEFGRKGRRLRVE 123
DD RDA+DA+ L+ E G R+ VE
Sbjct: 98 DDYRDADDAVYELNGKEL--LGERITVE 123
>gi|432882987|ref|XP_004074177.1| PREDICTED: uncharacterized protein LOC101163182 isoform 1 [Oryzias
latipes]
Length = 372
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 87/172 (50%), Gaps = 12/172 (6%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M ++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ E
Sbjct: 1 MSRVYIGRLSYRAREKDVERFFKGYGKILEVDLKNGYGFVEFDDPRDADDAVYDLNGKEL 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTR-----PSKTLFVINFDPYHTRT--R 166
G R+ VE TK R GGG + R P +T + + + +R +
Sbjct: 61 C--GERVIVEHTKGPRRDGGYGGGGRSGYGRWGGRDRYGPPVRTDYRLIVENLSSRCSWQ 118
Query: 167 DLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
DL+ + G++ + + RRN +++ D RAL+ + +++ R I
Sbjct: 119 DLKDYMRQAGEVTYADTHKGRRNEGVIEFRQYSDMKRALEKLDGTEVNGRKI 170
>gi|427777525|gb|JAA54214.1| Putative alternative splicing factor asf/sf2 [Rhipicephalus
pulchellus]
Length = 333
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 58/108 (53%), Gaps = 7/108 (6%)
Query: 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 112
M +F G YD R+ DLER FR YG+++ + +K+GF F+ + D RDAEDA+R L+
Sbjct: 1 MATRVFVGRLNYDVRERDLERFFRGYGRIEDIVLKNGFGFVDISDYRDAEDAVRDLNGKR 60
Query: 113 FGRKGRRLRVEWTKHERGIRR--PGGGSSARRPSTNTRPSKTLFVINF 158
G R+ VE RG+RR P RR TR + L V N
Sbjct: 61 L--MGERVTVELA---RGMRRGPPDYDRGPRRFGPPTRTNYQLLVENL 103
>gi|396472554|ref|XP_003839148.1| hypothetical protein LEMA_P028210.1 [Leptosphaeria maculans JN3]
gi|312215717|emb|CBX95669.1| hypothetical protein LEMA_P028210.1 [Leptosphaeria maculans JN3]
Length = 379
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 29/176 (16%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVD-------MKSGFAFIYMDDERDAEDAIRG 107
R ++ GN Y+ L+R+F R+G+++ V + GF ++ + DA+ AI
Sbjct: 192 RTLYIGNLYYEVTADQLQRVFSRFGEIENVKIIYDNRGLSRGFGYVEFKNIPDAQTAIDN 251
Query: 108 LDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRD 167
LD F +GR L V++ + +PG G + R STN+ PSKTLF+ N + +D
Sbjct: 252 LDMQVF--EGRNLVVQFHR-----EKPGFGKNNRANSTNS-PSKTLFIGNMS-FEMSDKD 302
Query: 168 LERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
L F ++ VR+ R FA + D A A N+ L ++V+
Sbjct: 303 LNDLFREVRNVVDVRVAIDRRTGQPRGFAHADF---LDIASATHAKNI--LANKVV 353
>gi|348670466|gb|EGZ10288.1| hypothetical protein PHYSODRAFT_361940 [Phytophthora sojae]
Length = 409
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 26/174 (14%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ GN Y+ Q D+E F ++G +++ +K G+AF++ + DAE A++ ++ E G
Sbjct: 23 LYVGNLFYELTQRDVEAEFGKFGPIEQCAVKKGYAFVHYEQLEDAELAVQEMNDKELG-- 80
Query: 117 GRRLRVEWTKHERGIRRPGG----------------GSSARRPSTNTRPSKTLFVINFDP 160
GRRLRV + RR G P S LFV N P
Sbjct: 81 GRRLRVAFAVSHGTQRRYDGPPPPLQAPAGQPQQQQPPLLHSPRFPVNASPNLFVANIPP 140
Query: 161 YHTRTRDLERHFEPYGKIISVRIRRNF-------AFVQYEVQEDATRALDATNM 207
H + +L++ F +G++ +V++ AFV + A +A AT +
Sbjct: 141 -HIKMSELDQAFAQFGEVKNVKVLPQARPDAPMSAFVDFSDVASAQKAHSATII 193
>gi|308466765|ref|XP_003095634.1| hypothetical protein CRE_13671 [Caenorhabditis remanei]
gi|308244633|gb|EFO88585.1| hypothetical protein CRE_13671 [Caenorhabditis remanei]
Length = 328
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 13/157 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS------GFAFIYMDDERDAEDAIRGLDR 110
++ GN + R+ ++E +F +YG++ +D+KS FAFI DD RDA++A+R D
Sbjct: 6 VYVGNLPSNVREKEIEDIFHKYGEIRNIDIKSRSRDSPAFAFIQFDDRRDAKEAVRARDG 65
Query: 111 TEFGRKGRRLRVEW-----TKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRT 165
EF G+RLRVE+ + G GS R + S ++ P
Sbjct: 66 YEFD--GKRLRVEFPRGQGPRGPGGRPTRDNGSRFGRNGGPPKRSNYRLIVEGLPRSGSW 123
Query: 166 RDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRAL 202
+D++ H + G+I + V++E ED A+
Sbjct: 124 QDIKDHLKQAGEICYANVHNGEGVVEFERYEDLEYAI 160
>gi|357621997|gb|EHJ73625.1| RNA-binding protein lark [Danaus plexippus]
Length = 341
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 75/165 (45%), Gaps = 18/165 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
IF GN +DL LF ++G V D+ + F++M++E+ +AI+ L+
Sbjct: 9 IFVGNLSDKTTDADLRPLFEKFGTVVECDIVRNYGFVHMENEQVGREAIQNLNGEVV--H 66
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYG 176
G+ +++E K S + PST P+ +FV N TR ++ F+ +G
Sbjct: 67 GQAIKIEAAK------------SRKAPST---PTTKIFVGNLTD-KTRAPEVRELFQKFG 110
Query: 177 KIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
++ I RN+ FV + D A+ N + + + V+ +
Sbjct: 111 TVVECDIVRNYGFVHLDASGDVNEAIKELNGMMVDGQPMKVQLST 155
>gi|449435631|ref|XP_004135598.1| PREDICTED: pre-mRNA-splicing factor SF2-like [Cucumis sativus]
Length = 315
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 98/223 (43%), Gaps = 30/223 (13%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R ++E LF +YG + +D+K G+AF+ +D RDAEDAI G D
Sbjct: 7 RTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAEDAIYGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLE 169
+F G RLRVE+ R G SS R S + ++ P +DL+
Sbjct: 67 GYKF--DGCRLRVEFAHGGR-----GHSSSVDRYSRSGSSRDFAVLVTGLPSSASWQDLK 119
Query: 170 RHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR--DDDDR 227
H G + + R+ + +D TN + +YA+R DD +
Sbjct: 120 DHMRRAGDVCFSEVFRD--------RGGMAGIVDYTNYDDM-------KYAIRKLDDSEF 164
Query: 228 RNGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPY 270
RN S R + D S SP R S DY R SRSPY
Sbjct: 165 RNAFSRAYVRVKEYDSRHSYSRSPSLDSRRS-DYSRSPSRSPY 206
>gi|11527011|gb|AAG36874.1|AF242767_1 SF2 [Caenorhabditis elegans]
Length = 258
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 51/76 (67%), Gaps = 6/76 (7%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG----FAFIYMDDERDAEDAIRGLDR 110
+ ++ GN D R+ ++E +F +YG++ VD+KSG FAF+ +D RDAEDA+R D
Sbjct: 9 QKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDG 68
Query: 111 TEFGRKGRRLRVEWTK 126
EF GRR+RVE+T+
Sbjct: 69 YEF--DGRRIRVEFTR 82
>gi|166844|gb|AAA32856.1| ribonucleoprotein [Arabidopsis thaliana]
gi|1582992|prf||2119375A Ser/Arg-rich protein
Length = 303
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 88/203 (43%), Gaps = 29/203 (14%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R ++ GN D R+ ++E LF +YG V ++D+K G+AF+ DD RDAEDAI G D
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN---------------TRPSKTLF 154
+F G RLRVE G RR + +R S+
Sbjct: 67 GYDF--DGHRLRVELA---HGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRV 121
Query: 155 VINFDPYHTRTRDLERHFEPYGKIISVRIRRN----FAFVQYEVQEDATRALDATNMSKL 210
++ + +DL+ H G + ++ R+ V Y ED AL + ++
Sbjct: 122 LVTWLASSASWQDLKDHIAKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTEF 181
Query: 211 TDRVISVEYAVRDDDDRRNGHSP 233
+ + VR+ D R++ SP
Sbjct: 182 RNAFSNGYVRVREYDSRKDSRSP 204
>gi|224068334|ref|XP_002302710.1| predicted protein [Populus trichocarpa]
gi|222844436|gb|EEE81983.1| predicted protein [Populus trichocarpa]
Length = 252
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 92/204 (45%), Gaps = 17/204 (8%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R ++ GN D R+ ++E LF +YG V +D+K G+AF+ ++ RDAEDAIRG D
Sbjct: 7 RTLYVGNLPGDIREKEVEDLFYKYGPVAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTL---FVINFDPYHTRTR 166
+F G RLRVE RG SS S+ V+ P +
Sbjct: 67 GYDF--DGHRLRVELAHGGRGHSSSDRHSSYSGGRGRGGASRRSEYRVVVTGLPSSASWQ 124
Query: 167 DLERHFEPYGKIISVRIRRN----FAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 222
DL+ H G + ++ R+ V Y ED A+ + S+ + VR
Sbjct: 125 DLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYEDMKYAIKKIDDSEFRNAFSQAYVRVR 184
Query: 223 DDDDRRNGH-SPDRNRDRSPDRGR 245
+ D +R+ SP RDRS RGR
Sbjct: 185 EYDSKRDSSRSP--GRDRSHSRGR 206
>gi|2443473|gb|AAB71386.1| ASF/SF2 homolog [Arabidopsis thaliana]
Length = 272
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 88/203 (43%), Gaps = 29/203 (14%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R ++ GN D R+ ++E LF +YG V ++D+K G+AF+ DD RDAEDAI G D
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN---------------TRPSKTLF 154
+F G RLRVE G RR + +R S+
Sbjct: 67 GYDF--DGHRLRVELA---HGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRV 121
Query: 155 VINFDPYHTRTRDLERHFEPYGKIISVRIRRN----FAFVQYEVQEDATRALDATNMSKL 210
++ P +DL+ H G + ++ R+ V Y ED AL + ++
Sbjct: 122 LVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTEF 181
Query: 211 TDRVISVEYAVRDDDDRRNGHSP 233
+ + VR+ D R++ SP
Sbjct: 182 RNAFSNGYVRVREYDSRKDSRSP 204
>gi|350408075|ref|XP_003488293.1| PREDICTED: serine/arginine-rich splicing factor 4-like isoform 2
[Bombus impatiens]
Length = 418
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 71/168 (42%), Gaps = 43/168 (25%)
Query: 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 112
M +F G Y R+ DLE+ FR+YG++ V MK+GFAF+ ++ +
Sbjct: 1 MSTRVFVGGLTYRVRERDLEKFFRKYGRIKEVAMKNGFAFVV---------SLMWFNCFF 51
Query: 113 FGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHF 172
+ G R+ V GG PY TR RDLER F
Sbjct: 52 YSMVGTRVYV-------------GGL---------------------PYGTRERDLERFF 77
Query: 173 EPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
YG+ V I+ + FV+++ DA A+ N +L I+VE A
Sbjct: 78 RGYGRFRDVLIKNGYGFVEFDDYRDADDAVYELNGKELLGERITVERA 125
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 36 LGFRRSHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYM 95
F S + + + ++ G Y R+ DLER FR YG+ V +K+G+ F+
Sbjct: 38 FAFVVSLMWFNCFFYSMVGTRVYVGGLPYGTRERDLERFFRGYGRFRDVLIKNGYGFVEF 97
Query: 96 DDERDAEDAIRGLDRTEFGRKGRRLRVE 123
DD RDA+DA+ L+ E G R+ VE
Sbjct: 98 DDYRDADDAVYELNGKEL--LGERITVE 123
>gi|13385016|ref|NP_079849.1| serine/arginine-rich splicing factor 9 [Mus musculus]
gi|66774167|sp|Q9D0B0.1|SRSF9_MOUSE RecName: Full=Serine/arginine-rich splicing factor 9; AltName:
Full=Splicing factor, arginine/serine-rich 9
gi|12847866|dbj|BAB27740.1| unnamed protein product [Mus musculus]
gi|15126569|gb|AAH12217.1| Splicing factor, arginine/serine rich 9 [Mus musculus]
gi|148687919|gb|EDL19866.1| splicing factor, arginine/serine rich 9, isoform CRA_b [Mus
musculus]
Length = 222
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 81/160 (50%), Gaps = 11/160 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R+ DLE LF +YG++ +++K+ FAF+ +D RDAEDAI G +
Sbjct: 17 IYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 76
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERH 171
++G+ RLRVE+ + G GG R TR S +++ P +DL+ H
Sbjct: 77 DYGQC--RLRVEFPRTYGG---RGGWPRGARNGPPTRRSDFRVLVSGLPPSGSWQDLKDH 131
Query: 172 FEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
G + ++++ V+Y +ED AL + +K
Sbjct: 132 MREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 171
>gi|325302612|tpg|DAA34674.1| TPA_inf: alternative splicing factor SRp55/B52/SRp75 [Amblyomma
variegatum]
Length = 281
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 81/180 (45%), Gaps = 27/180 (15%)
Query: 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 112
M +F G+ Y R+ D++R F+ YG+V + +K+GF F+ +D RDA+DAI+ L+ E
Sbjct: 1 MTTRVFIGHLSYQVRERDVDRFFKGYGRVGDIHLKNGFGFVEFEDHRDADDAIKDLNGKE 60
Query: 113 FGRKGRRLRVEWTKHER----------GIRR----PGGG-SSARRPSTNTRPSKT---LF 154
G R+ VE R G R PGGG +A R S P +T L
Sbjct: 61 L--LGERVSVELAHGSRRGPGGRIVAPGSRDWRSPPGGGRFNAPRESRFGPPVRTNYQLV 118
Query: 155 VINFDPYHTRTRDLERHFEPYGKIISVRIRRN------FAFVQYEVQEDATRALDATNMS 208
V N H +DL+ + G++ N F Y +A LD T++S
Sbjct: 119 VENLSS-HVSWQDLKDYMRQAGEVTFTDAHSNRPNQGIVEFSNYADMRNALNKLDNTDLS 177
>gi|256092018|ref|XP_002581797.1| arginine/serine-rich splicing factor [Schistosoma mansoni]
Length = 194
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 78/160 (48%), Gaps = 20/160 (12%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG------FAFIYMDDERDAEDAIRGLDR 110
I+ GN D + D+E LF +YG + +D+K+G FAF+ +DE DA DA+RG D
Sbjct: 12 IYVGNLPPDTKTRDIENLFSKYGPIAAIDLKAGQRRGPPFAFVEFEDELDASDAVRGRDG 71
Query: 111 TEFGRKGRRLRVEWTKH---ERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRD 167
F G LRVE + ER R GGG+S PS R S ++ P +D
Sbjct: 72 YNF--DGYALRVELPRTGVPERRFNRGGGGASG--PS---RRSDFRVIVTGLPPTGSWQD 124
Query: 168 LERHFEPYGKIISVRIRRN----FAFVQYEVQEDATRALD 203
L+ H G + + R+ F++YE + A R LD
Sbjct: 125 LKDHMREAGDVGYADVFRDGTGVVEFLRYEDMKYAIRRLD 164
>gi|198432077|ref|XP_002131581.1| PREDICTED: similar to Splicing factor, arginine/serine-rich 4
(Pre-mRNA-splicing factor SRP75) (SRP001LB) [Ciona
intestinalis]
Length = 332
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 36/192 (18%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFG 114
R IF G Y AR+ D+ER F+ +G++ +++K+GF F+ DD RDA+DA+ ++
Sbjct: 4 RRIFVGRLSYRAREGDIERFFKGFGRITDINIKNGFCFVEFDDSRDADDAVYEMNNQMLC 63
Query: 115 RKGRRLRVEWTKHERGIRRPGGGSS--------------------------ARRPSTNTR 148
G R+ VE K G +R G RR S
Sbjct: 64 --GERVTVELAK---GTQRWGQERRDYGGGRDYGRGDYGGGYGGRNNDRGFGRRQSKFAP 118
Query: 149 PSKTLFVINFDPYHTRT--RDLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALD 203
P +T + + + TR ++L+ H G+I + + RRN V + +D A++
Sbjct: 119 PMRTEYRVIVENLSTRVAWQELKDHLRQAGEITYADAHKHRRNEGVVDFASYDDMKNAIE 178
Query: 204 ATNMSKLTDRVI 215
N ++L R I
Sbjct: 179 KFNNTELNGRKI 190
>gi|326490421|dbj|BAJ84874.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326522680|dbj|BAJ88386.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 286
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 74/167 (44%), Gaps = 16/167 (9%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG++ +D+K GFAF+ +D RDAEDAI+G D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRDAEDAIQGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERG--IRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRD 167
F G RLRVE R P R +R ++ ++ P +D
Sbjct: 67 GYNF--DGNRLRVELAHGGRANSSSLPNSHGGGGRRGGVSRHTEYRVLVTGLPSSASWQD 124
Query: 168 LERHFEPYGKIISVRIRR----NFAFVQYEVQED---ATRALDATNM 207
L+ H G + + R V Y +D A R LD T
Sbjct: 125 LKDHMRKAGDVCFSEVYREGGGTIGIVDYTNYDDMKYAIRKLDDTEF 171
>gi|159463554|ref|XP_001690007.1| SR protein factor [Chlamydomonas reinhardtii]
gi|158283995|gb|EDP09745.1| SR protein factor [Chlamydomonas reinhardtii]
Length = 338
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 48/72 (66%), Gaps = 7/72 (9%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG-----FAFIYMDDERDAEDAIRGLDRT 111
+F GN D R+ ++E LF +YG++ VD+K G FAF+ +DERDA DA+RG D
Sbjct: 6 VFVGNLPMDVREREVEDLFFKYGRIRSVDLKIGPRPPAFAFVEFEDERDAADAVRGRDGI 65
Query: 112 EFGRKGRRLRVE 123
EF +G+RLRVE
Sbjct: 66 EF--QGQRLRVE 75
>gi|33146854|dbj|BAC79849.1| putative pre-mRNA splicing factor SF2 [Oryza sativa Japonica Group]
Length = 362
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 73/162 (45%), Gaps = 15/162 (9%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG++ +D+K GFAF+ +D RDAEDAIRG D
Sbjct: 73 RTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGFAFVEFEDPRDAEDAIRGRD 132
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN-TRPSKTLFVINFDPYHTRTRDL 168
F G RLRVE RG S +R ++ ++ P +DL
Sbjct: 133 GYNF--DGNRLRVELAHGGRGNSSSFNNSGGGGRRGGVSRHTEYRVLVTGLPSSASWQDL 190
Query: 169 ERHFEPYGKIISVRIRR----NFAFVQYEVQED---ATRALD 203
+ H G + + R V Y +D A R LD
Sbjct: 191 KDHMRNAGDVCYSEVYREGGGTIGIVDYTNYDDMKYAIRKLD 232
>gi|432882991|ref|XP_004074179.1| PREDICTED: uncharacterized protein LOC101163182 isoform 3 [Oryzias
latipes]
Length = 388
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 87/172 (50%), Gaps = 12/172 (6%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M ++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ E
Sbjct: 1 MSRVYIGRLSYRAREKDVERFFKGYGKILEVDLKNGYGFVEFDDPRDADDAVYDLNGKEL 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTR-----PSKTLFVINFDPYHTRT--R 166
G R+ VE TK R GGG + R P +T + + + +R +
Sbjct: 61 C--GERVIVEHTKGPRRDGGYGGGGRSGYGRWGGRDRYGPPVRTDYRLIVENLSSRCSWQ 118
Query: 167 DLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
DL+ + G++ + + RRN +++ D RAL+ + +++ R I
Sbjct: 119 DLKDYMRQAGEVTYADTHKGRRNEGVIEFRQYSDMKRALEKLDGTEVNGRKI 170
>gi|47086959|ref|NP_998482.1| uncharacterized protein LOC406277 [Danio rerio]
gi|45595715|gb|AAH67153.1| Zgc:56141 [Danio rerio]
Length = 341
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 70/165 (42%), Gaps = 22/165 (13%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M IF GN A +L+ LF +YG V + FAF++MDD + A AI+ L +
Sbjct: 1 MVKIFIGNLPQQAEVDELKSLFSQYGTVTECAIIKNFAFVHMDDRKSATKAIKNLHLYKL 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE ++ N P K L V N + +L FE
Sbjct: 61 --HGTPINVEASR-----------------GKNQGPVK-LHVANVE--KGTDDELRALFE 98
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG + I +NFAFV ++A A+ + ++ + I V+
Sbjct: 99 DYGTVAECAIIKNFAFVHMNNSDEAMDAIKGLDNTEFQGKRIHVQ 143
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 70 DLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 126
+L LF YG V + FAF++M++ +A DAI+GLD TEF +G+R+ V+ +K
Sbjct: 92 ELRALFEDYGTVAECAIIKNFAFVHMNNSDEAMDAIKGLDNTEF--QGKRIHVQISK 146
>gi|403166701|ref|XP_003326577.2| hypothetical protein PGTG_07555 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375166678|gb|EFP82158.2| hypothetical protein PGTG_07555 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 258
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 12/166 (7%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFG 114
R I+ G DA ++D+E+ F RYG + V + +GF F+ D RDAEDA+ L+ +F
Sbjct: 6 RRIYVGRIPPDASRTDVEKYFGRYGTLMDVRIMAGFGFLEYDSVRDAEDAVHDLNGRDF- 64
Query: 115 RKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEP 174
G RL VE+ K RG GG RR ++ + T +DL+
Sbjct: 65 -MGERLIVEFAKAPRGRDIHSGGHGPRRGGFR-------LLVKGLSHETSWQDLKDFARQ 116
Query: 175 YGKIISVRIRRNF---AFVQYEVQEDATRALDATNMSKLTDRVISV 217
G + + RN +++ Q+DA A+ + ++L V+++
Sbjct: 117 AGNVTRADVDRNMPGEGLIEFASQDDADNAIRKLDGTELKGMVVTL 162
>gi|218200241|gb|EEC82668.1| hypothetical protein OsI_27298 [Oryza sativa Indica Group]
Length = 321
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 8/135 (5%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG++ +D+K GFAF+ +D RDAEDAIRG D
Sbjct: 73 RTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGFAFVEFEDPRDAEDAIRGRD 132
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN-TRPSKTLFVINFDPYHTRTRDL 168
F G RLRVE RG S +R ++ ++ P +DL
Sbjct: 133 GYNF--DGNRLRVELAHGGRGNSSSFNNSGGGGRRGGVSRHTEYRVLVTGLPSSASWQDL 190
Query: 169 ERHFEPYGKIISVRI 183
+ H G +++++
Sbjct: 191 KDHMRNAGDVVTLKC 205
>gi|74192738|dbj|BAE34886.1| unnamed protein product [Mus musculus]
Length = 222
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 81/160 (50%), Gaps = 11/160 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R+ DLE LF +YG++ +++K+ FAF+ +D RDAEDAI G +
Sbjct: 17 IYVGNLPSDVRERDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 76
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERH 171
++G+ RLRVE+ + G GG R TR S +++ P +DL+ H
Sbjct: 77 DYGQC--RLRVEFPRTYGG---RGGWPRGARNGPPTRRSDFRVLVSGLPPSGSWQDLKDH 131
Query: 172 FEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
G + ++++ V+Y +ED AL + +K
Sbjct: 132 MREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 171
>gi|350416927|ref|XP_003491172.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein lark-like
[Bombus impatiens]
Length = 458
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 18/165 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
IF GN +D++ LF +YGKV D+ + F++M++E +AI+ L+
Sbjct: 106 IFIGNLADKTSNADIKPLFEKYGKVVECDVVKNYGFVHMENEEAGRNAIQNLNGHIV--H 163
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYG 176
G+ ++ E K +G P+T P+ +FV N +T+ + F YG
Sbjct: 164 GQPIKCEAAKSRKG------------PNT---PTTKIFVGNLTD-NTKAPQVRELFAKYG 207
Query: 177 KIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
++ I RN+ FV E D A+ N + + + V+ +
Sbjct: 208 TVVECDIVRNYGFVHLEATGDVNDAIKELNGQMVDGQPMKVQIST 252
>gi|387219571|gb|AFJ69494.1| splicing factor, arginine/serine-rich 1/9 [Nannochloropsis gaditana
CCMP526]
Length = 277
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 82/160 (51%), Gaps = 17/160 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMK-----SGFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R+ DL+ LF +YG++ +D+K +AF+ +D RDA+DA+ D
Sbjct: 5 IYVGNLPMDVRERDLDDLFYKYGRIRGIDIKRPSRPPAYAFVAFEDPRDAKDAVHYRDNY 64
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERH 171
+F G R+RVE +E RR G R T+ R L V + P T +DL+ +
Sbjct: 65 DF--DGGRIRVELA-NETPRRRDDRGFGGGRNRTDFR----LEVSDL-PDRTSWQDLKDY 116
Query: 172 FEPYGKIISVRIRRNF-AFVQYEVQED---ATRALDATNM 207
F+P G ++ + RN V++ +ED A R LD +
Sbjct: 117 FKPVGDVLYADVSRNGEGVVEFATKEDMFAAKRKLDGSTF 156
>gi|345491212|ref|XP_001603815.2| PREDICTED: serine-arginine protein 55-like isoform 2 [Nasonia
vitripennis]
Length = 364
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 112
M +F G Y R+ DLE+ FR+YG++ V MK+GFAF+ DD RDA+DA+ L+ E
Sbjct: 1 MSTRVFVGGLTYRVRERDLEKFFRKYGRIKEVAMKNGFAFVEFDDYRDADDAVYELNGKE 60
Query: 113 FGRKGRRLRVE 123
G R+ VE
Sbjct: 61 L--LGERITVE 69
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 150 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSK 209
S +FV Y R RDLE+ F YG+I V ++ FAFV+++ DA A+ N +
Sbjct: 2 STRVFVGGL-TYRVRERDLEKFFRKYGRIKEVAMKNGFAFVEFDDYRDADDAVYELNGKE 60
Query: 210 LTDRVISVEYA 220
L I+VE A
Sbjct: 61 LLGERITVERA 71
>gi|25150290|ref|NP_499649.2| Protein RSP-3 [Caenorhabditis elegans]
gi|56749665|sp|Q9NEW6.2|RSP3_CAEEL RecName: Full=Probable splicing factor, arginine/serine-rich 3;
AltName: Full=CeSF2; AltName: Full=CeSF2/ASF
gi|21615505|emb|CAC35847.2| Protein RSP-3 [Caenorhabditis elegans]
Length = 258
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 50/75 (66%), Gaps = 6/75 (8%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG----FAFIYMDDERDAEDAIRGLDR 110
+ ++ GN D R+ ++E +F +YG++ VD+KSG FAF+ +D RDAEDA+R D
Sbjct: 9 QKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDG 68
Query: 111 TEFGRKGRRLRVEWT 125
EF GRR+RVE+T
Sbjct: 69 YEF--DGRRIRVEFT 81
>gi|332377011|gb|AEE63645.1| unknown [Dendroctonus ponderosae]
Length = 356
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 18/165 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
IF GN S+L LF +YGKV D+ + F++M++E + +AI+ L+
Sbjct: 12 IFVGNLAEKTSVSELRPLFEKYGKVVECDVVKNYGFVHMENESEGREAIQQLNGQMI--N 69
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYG 176
G+ ++ E K S + P T P+ +FV N +T+ + F+ +G
Sbjct: 70 GQSMKCEAAK------------SRKAPQT---PTIKIFVGNLTD-NTKAPQIRELFKKFG 113
Query: 177 KIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
++ I RN+ FV E D A+ N + + + V+ +
Sbjct: 114 TVVECDIVRNYGFVHLESSGDVNEAIKDLNGQIVDGQPMKVQIST 158
>gi|296412014|ref|XP_002835723.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629512|emb|CAZ79880.1| unnamed protein product [Tuber melanosporum]
Length = 342
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 97/211 (45%), Gaps = 22/211 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGLDRTEFG 114
++ GN DAR+ ++E F+ +G + V++K +GF FI D E DA+D + +F
Sbjct: 10 LYLGNLHKDARKQEVEDFFKEHGSGNVVEIKLMNGFGFIQYDSEADAKDVVPAYHGRDF- 68
Query: 115 RKGRRLRVEWTKHERGIRR----PGGGSSARRPSTNTRPSKTLFVINFDPYH--TRTRDL 168
KG+ L V++ + R R PGG T RP +T F +N + T +DL
Sbjct: 69 -KGQPLTVQFARGSRHNPRHHDFPGGAD-----RTFPRPRRTAFRMNISGLNPDTSWQDL 122
Query: 169 ERHFEPYGKII----SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDD 224
+ G + R R V++E +D RA+ + ++ +S V D
Sbjct: 123 KDFARKSGSDVVFSEVTRERDGRGMVEFETHDDLRRAVAFLDRTEFKGTQVSCTPDVLAD 182
Query: 225 DDRRNGHSPDRNRDRSPD--RGRRRSPSPYR 253
D GH P R R SP GRR SP+P R
Sbjct: 183 HDVPRGHGPGR-RSVSPRGYGGRRYSPNPSR 212
>gi|241574285|ref|XP_002403076.1| alternative splicing factor SRp55/B52/SRp75, putative [Ixodes
scapularis]
gi|215502149|gb|EEC11643.1| alternative splicing factor SRp55/B52/SRp75, putative [Ixodes
scapularis]
Length = 268
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 81/180 (45%), Gaps = 29/180 (16%)
Query: 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 112
M +F G+ R+ DL++ F+ YG+V + +K+GF F+ DD RDA+DAI L+ E
Sbjct: 1 MTTRVFIGHLSCQVREKDLDKFFKGYGRVGDIHLKNGFGFVEFDDHRDADDAISDLNGKE 60
Query: 113 FGRKGRRLRVEWTKHERGIRRPGG------------GSSARRPSTNTR---PSKT---LF 154
G R+ VE R R PGG +TR P +T L
Sbjct: 61 L--LGERVSVELAYGSR--RGPGGRIVPPRPDWRSPPPRRPFAPRDTRFGPPQRTEYQLI 116
Query: 155 VINFDPYHTRTRDLERHFEPYGKII---SVRIRRN---FAFVQYEVQEDATRALDATNMS 208
V N H +DL+ + G++ + +IR N F Y ++A LD T++S
Sbjct: 117 VENLSS-HVSWQDLKDYMRQAGEVTYADAHKIRPNEGVVEFANYSDMKNAISKLDNTDLS 175
>gi|115474019|ref|NP_001060608.1| Os07g0673500 [Oryza sativa Japonica Group]
gi|113612144|dbj|BAF22522.1| Os07g0673500 [Oryza sativa Japonica Group]
Length = 296
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 73/162 (45%), Gaps = 15/162 (9%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG++ +D+K GFAF+ +D RDAEDAIRG D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGFAFVEFEDPRDAEDAIRGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN-TRPSKTLFVINFDPYHTRTRDL 168
F G RLRVE RG S +R ++ ++ P +DL
Sbjct: 67 GYNF--DGNRLRVELAHGGRGNSSSFNNSGGGGRRGGVSRHTEYRVLVTGLPSSASWQDL 124
Query: 169 ERHFEPYGKIISVRIRR----NFAFVQYEVQED---ATRALD 203
+ H G + + R V Y +D A R LD
Sbjct: 125 KDHMRNAGDVCYSEVYREGGGTIGIVDYTNYDDMKYAIRKLD 166
>gi|157113456|ref|XP_001657837.1| arginine/serine-rich splicing factor [Aedes aegypti]
gi|108877724|gb|EAT41949.1| AAEL006473-PA [Aedes aegypti]
Length = 237
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 102/226 (45%), Gaps = 36/226 (15%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG----FAFIYMDDERDAEDAIRGLDRTE 112
I+ GN D R D++ LF ++GKV VD+K+ FAF+ +D RDA+DA++ D +
Sbjct: 10 IYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPPFAFVEFEDARDADDAVKARDGYD 69
Query: 113 FGRKGRRLRVE---------WTKHERGIRRPGGGSSARRPSTN--TRPSKTLFVINFDPY 161
+ G RLRVE ++ RG GG + R + R S+ ++ P
Sbjct: 70 Y--DGYRLRVEFPRGGGPGRYSSSSRGGNSDRGGGARDRGNRGPPARRSQFRVMVTGLPA 127
Query: 162 HTRTRDLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
+DL+ H G + + ++ V++ ED A+ + S+ V Y
Sbjct: 128 SGSWQDLKDHMREAGDVCFADVYKDGTGVVEFLRHEDMKYAIKKLDDSRFRSHEGEVAYI 187
Query: 221 -VRDD----DDRRNGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDY 261
VR+D DDRR G D RS SP RR RG+P Y
Sbjct: 188 RVREDSTNNDDRRGGEYRD------------RSYSP-RRRRGTPTY 220
>gi|5815235|gb|AAD52609.1|AF173640_1 splicing factor SR1 [Arabidopsis thaliana]
Length = 307
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 88/207 (42%), Gaps = 33/207 (15%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R ++ GN D R+ ++E LF +YG V ++D+K G+AF+ DD RDAEDAI G D
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN-------------------TRPS 150
+F G RLRVE G RR + +R S
Sbjct: 67 GYDF--DGHRLRVELA---HGGRRSSDDTRGSFNGGGRGGGRGRGDGRGDGGSRGPSRRS 121
Query: 151 KTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN----FAFVQYEVQEDATRALDATN 206
+ ++ P +DL+ H G + ++ R+ V Y ED AL +
Sbjct: 122 EFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLD 181
Query: 207 MSKLTDRVISVEYAVRDDDDRRNGHSP 233
++ + + VR+ D R++ SP
Sbjct: 182 DTEFRNAFSNGYVRVREYDSRKDSRSP 208
>gi|47575808|ref|NP_001001248.1| arginine/serine-rich splicing factor 4 isoform 1 [Xenopus
(Silurana) tropicalis]
gi|45872604|gb|AAH68213.1| splicing factor, arginine/serine-rich 6 [Xenopus (Silurana)
tropicalis]
Length = 568
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 86/176 (48%), Gaps = 20/176 (11%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y R+ D++R F YGK+ VD+K+G+ F+ +D RDA+DA+ L+ +
Sbjct: 4 VYIGRLGYHVREKDIQRFFGGYGKLLEVDLKNGYGFVEFEDSRDADDAVYELNGKDLC-- 61
Query: 117 GRRLRVEWTKHERGIR--RPGGGSSARRPSTNTR--------PSKTLFVINFDPYHTRT- 165
G R+ VE H RG R R G G +R N R P +T F + + +R
Sbjct: 62 GERVIVE---HARGPRRDRDGYGYGSRSGYRNQRSGRDKYGPPVRTEFRLIVENLSSRCS 118
Query: 166 -RDLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
+DL+ G++ + + R N +++ D RA++ + +++ R I +
Sbjct: 119 WQDLKDFMRQAGEVTYADAHKERANEGVIEFRSYSDMKRAMEKLDGTEINGRRIRL 174
>gi|432882993|ref|XP_004074180.1| PREDICTED: uncharacterized protein LOC101163182 isoform 4 [Oryzias
latipes]
Length = 344
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 26/169 (15%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M ++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ E
Sbjct: 1 MSRVYIGRLSYRAREKDVERFFKGYGKILEVDLKNGYGFVEFDDPRDADDAVYDLNGKEL 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRT--RDLERH 171
GR W GG P P +T + + + +R +DL+ +
Sbjct: 61 CGYGR-----W-----------GGRDRYGP-----PVRTDYRLIVENLSSRCSWQDLKDY 99
Query: 172 FEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
G++ + + RRN +++ D RAL+ + +++ R I +
Sbjct: 100 MRQAGEVTYADTHKGRRNEGVIEFRQYSDMKRALEKLDGTEVNGRKIRL 148
>gi|388854914|emb|CCF51417.1| probable PAB1-mRNA polyadenylate-binding protein [Ustilago hordei]
Length = 648
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 88/208 (42%), Gaps = 23/208 (11%)
Query: 40 RSHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAF 92
R Q I A ++C N + + E+LF YGK+ ++ GF F
Sbjct: 210 RKERQAKIEESRAKFTNVYCKNVDPEVTDEQFEKLFTNYGKITSCVLQRDDDGKSKGFGF 269
Query: 93 IYMDDERDAEDAIRGLDRTEFGRKGRRLRV----EWTKHERGIRRPGGGSSARRPSTNTR 148
+ +D +A+ A+ L ++F G++L V + ++ E +RR +A+
Sbjct: 270 VNFEDHEEAQKAVDELHDSDF--HGQKLFVARAQKKSEREEELRR--SYEAAKNEKLAKF 325
Query: 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRR-------NFAFVQYEVQEDATRA 201
L++ N + R L F P+G I S +I R F FV Y V E+A +A
Sbjct: 326 QGVNLYLKNIPESYDDER-LREEFAPFGTITSCKIMRAPSGVSRGFGFVCYSVPEEANKA 384
Query: 202 LDATNMSKLTDRVISVEYAVRDDDDRRN 229
+ N L +R + V A R D R+
Sbjct: 385 VSEMNGKMLDNRPLYVALAQRKDVRRQQ 412
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 75/179 (41%), Gaps = 31/179 (17%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDAIRGL 108
++ G + ++ L +F G V D V +S G+A++ + D E A+ L
Sbjct: 47 LYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQL 106
Query: 109 DRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDL 168
+ + + R R+ W++ + +RR G G+ +F+ N D + L
Sbjct: 107 NYSLI--RNRPCRIMWSQRDPALRRTGQGN--------------IFIKNLDA-GIDNKAL 149
Query: 169 ERHFEPYGKIISVRIRRN------FAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
F +G I+S ++ N + FV YE E A A+ N L D+ + V + +
Sbjct: 150 HDTFAAFGNILSCKVATNDTGSLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHI 208
>gi|357131986|ref|XP_003567614.1| PREDICTED: pre-mRNA-splicing factor SF2-like [Brachypodium
distachyon]
Length = 262
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 75/167 (44%), Gaps = 19/167 (11%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R+ ++E LF +YG++ +D+K G+AF+ +D RDA+DAI G D
Sbjct: 9 IYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGY 68
Query: 112 EFGRKGRRLRVEWTKHERG----IRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRD 167
F G RLRVE RG RP SS RR + R + V P +D
Sbjct: 69 NF--DGYRLRVELAHGGRGQSYQYERPRSYSSGRRGGVSRRSEYRVLVDGL-PSSASWQD 125
Query: 168 LERHFEPYGKIISVRIRRN-------FAFVQYEVQEDATRALDATNM 207
L+ H G + + R + Y+ + A R LD T
Sbjct: 126 LKDHMRRAGDVCFSDVYREAGAIVGIVDYTNYDDMKYAIRKLDGTEF 172
>gi|330794338|ref|XP_003285236.1| hypothetical protein DICPUDRAFT_86618 [Dictyostelium purpureum]
gi|325084778|gb|EGC38198.1| hypothetical protein DICPUDRAFT_86618 [Dictyostelium purpureum]
Length = 1002
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 94/233 (40%), Gaps = 41/233 (17%)
Query: 37 GFRRSHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDR-VDMKS------- 88
G + + L+I +F GN ++ + L+++F +YG VDR + MKS
Sbjct: 390 GTKLKNCTLTITEIPLADSLLFVGNLGFEITKEQLKKIFEKYGDVDRIIIMKSKRSGENK 449
Query: 89 GFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTR 148
G+AFI + A A L F R R +RV+W ++ + +
Sbjct: 450 GYAFIDYRTKLQANSAKTSLGSFSFNR--RTIRVDWAENCNSLE--------------SL 493
Query: 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI-------RRNFAFVQYEVQEDATRA 201
SKT+FV L++ F P+GKI + +R FAF+ Y ++A +A
Sbjct: 494 HSKTIFVDRLPRSFADIPILKKLFSPFGKIKDCNVVPNQYGQQRGFAFIDYTTVDEAEKA 553
Query: 202 LDATNMSKLTDRVISVEYA---------VRDDDDRRNGHS-PDRNRDRSPDRG 244
N L I V +A ++ RN H NR +P RG
Sbjct: 554 QRLMNDKDLRGYKIRVNFANPAKAGHILIKPQAQSRNEHKGVQSNRGSAPTRG 606
>gi|30678395|ref|NP_850934.1| Pre-mRNA-splicing factor SF2 [Arabidopsis thaliana]
gi|22135918|gb|AAM91541.1| SF2/ASF-like splicing modulator Srp30, putative [Arabidopsis
thaliana]
gi|30023782|gb|AAP13424.1| At1g02840 [Arabidopsis thaliana]
gi|332189357|gb|AEE27478.1| Pre-mRNA-splicing factor SF2 [Arabidopsis thaliana]
Length = 285
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 88/203 (43%), Gaps = 29/203 (14%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R ++ GN D R+ ++E LF +YG V ++D+K G+AF+ DD RDAEDAI G D
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN---------------TRPSKTLF 154
+F G RLRVE G RR + +R S+
Sbjct: 67 GYDF--DGHRLRVELA---HGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRV 121
Query: 155 VINFDPYHTRTRDLERHFEPYGKIISVRIRRN----FAFVQYEVQEDATRALDATNMSKL 210
++ P +DL+ H G + ++ R+ V Y ED AL + ++
Sbjct: 122 LVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTEF 181
Query: 211 TDRVISVEYAVRDDDDRRNGHSP 233
+ + VR+ D R++ SP
Sbjct: 182 RNAFSNGYVRVREYDSRKDSRSP 204
>gi|355718943|gb|AES06437.1| splicing factor, arginine/serine-rich 9 [Mustela putorius furo]
Length = 220
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 82/160 (51%), Gaps = 11/160 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R+ DLE LF +YG++ +++K+ FAF+ +D RDAEDAI G +
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERH 171
++G+ RLRVE+ + G R GG R TR S +++ P +DL+ H
Sbjct: 76 DYGQC--RLRVEFPR-TYGSR--GGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDH 130
Query: 172 FEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
G + ++++ V+Y +ED AL + +K
Sbjct: 131 MREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 170
>gi|68037673|gb|AAY84884.1| alternative splicing regulator [Triticum aestivum]
Length = 284
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 74/174 (42%), Gaps = 16/174 (9%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG++ +D+K GFAF+ +D RDAEDAI G D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRDAEDAIHGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERG--IRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRD 167
F G RLRVE R P R +R ++ ++ P +D
Sbjct: 67 GYNF--DGNRLRVELAHGGRANSSSLPNSYGGGGRRGGVSRHTEYRVLVTGLPSSASWQD 124
Query: 168 LERHFEPYGKIISVRIRR----NFAFVQYEVQED---ATRALDATNMSKLTDRV 214
L+ H G + + R V Y +D A R LD T R
Sbjct: 125 LKDHMRKAGDVCFSEVYREGGGTIGIVDYTNYDDMKYAIRKLDDTEFKNAFSRA 178
>gi|5815239|gb|AAD52613.1| splicing factor SR1E [Arabidopsis thaliana]
Length = 270
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 88/207 (42%), Gaps = 33/207 (15%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R ++ GN D R+ ++E LF +YG V ++D+K G+AF+ DD RDAEDAI G D
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN-------------------TRPS 150
+F G RLRVE G RR + +R S
Sbjct: 67 GYDF--DGHRLRVELA---HGGRRSSDDTRGSFNGGGRGGGRGRGDGRGDGGSRGPSRRS 121
Query: 151 KTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN----FAFVQYEVQEDATRALDATN 206
+ ++ P +DL+ H G + ++ R+ V Y ED AL +
Sbjct: 122 EFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLD 181
Query: 207 MSKLTDRVISVEYAVRDDDDRRNGHSP 233
++ + + VR+ D R++ SP
Sbjct: 182 DTEFRNAFSNGYVRVREYDSRKDSRSP 208
>gi|57105666|ref|XP_534706.1| PREDICTED: serine/arginine-rich splicing factor 9 isoform 1 [Canis
lupus familiaris]
Length = 221
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 82/160 (51%), Gaps = 11/160 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R+ DLE LF +YG++ +++K+ FAF+ +D RDAEDAI G +
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERH 171
++G+ RLRVE+ + G R GG R TR S +++ P +DL+ H
Sbjct: 76 DYGQC--RLRVEFPR-TYGSR--GGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDH 130
Query: 172 FEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
G + ++++ V+Y +ED AL + +K
Sbjct: 131 MREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 170
>gi|66809897|ref|XP_638672.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|60467278|gb|EAL65311.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 365
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M I+ G +DAR+ DL F ++GK+DR++++ GF FI D+ A+DAI + F
Sbjct: 1 MSKIYIGRLNHDAREDDLYGRFSKFGKIDRLELRKGFCFIEYFDKASADDAINSEHKQNF 60
Query: 114 GRKGRRLRVEWTKHERGIRRP 134
GR + VE + +GI+RP
Sbjct: 61 --LGRNIIVELSNSSKGIKRP 79
>gi|222637670|gb|EEE67802.1| hypothetical protein OsJ_25544 [Oryza sativa Japonica Group]
Length = 338
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 73/162 (45%), Gaps = 15/162 (9%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG++ +D+K GFAF+ +D RDAEDAIRG D
Sbjct: 73 RTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGFAFVEFEDPRDAEDAIRGRD 132
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN-TRPSKTLFVINFDPYHTRTRDL 168
F G RLRVE RG S +R ++ ++ P +DL
Sbjct: 133 GYNF--DGNRLRVELAHGGRGNSSSFNNSGGGGRRGGVSRHTEYRVLVTGLPSSASWQDL 190
Query: 169 ERHFEPYGKIISVRIRR----NFAFVQYEVQED---ATRALD 203
+ H G + + R V Y +D A R LD
Sbjct: 191 KDHMRNAGDVCYSEVYREGGGTIGIVDYTNYDDMKYAIRKLD 232
>gi|167515992|ref|XP_001742337.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778961|gb|EDQ92575.1| predicted protein [Monosiga brevicollis MX1]
Length = 164
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 11/165 (6%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFG 114
R ++ GN D R+ +L+ LF +YG++ + +K +AF+ +DERDAEDA+ G D F
Sbjct: 6 RRVYVGNLPRDIRERELDELFYKYGRILDIHIKGPYAFVTFEDERDAEDAVHGRDGINFA 65
Query: 115 RKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHF-- 172
G RLRVE + PG + R + + + S+ +I P +D++ F
Sbjct: 66 --GGRLRVELSN-------PGRRGANPRDNFSGKHSEFRVLIKGLPRTASWQDVKDFFKD 116
Query: 173 EPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
E + + R ++ QED ALD N KL ++ +
Sbjct: 117 ERLDVVFTDVNRDGVGMAEFGNQEDMNFALDKMNGRKLNSHLVRI 161
>gi|209155952|gb|ACI34208.1| RNA-binding protein 4B [Salmo salar]
Length = 345
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 22/165 (13%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M IF GN + + ++E LF +G V +AF++MDD + A AIR L F
Sbjct: 1 MVKIFIGNLPNEVEKDEIEALFTEHGTVTECAKFKNYAFVHMDDRKSATKAIRSLHL--F 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
GR + VE ++ N P K L V N + +L FE
Sbjct: 59 KLHGRPINVEPSR-----------------GKNQGPVK-LHVANVE--KGNGDELRTLFE 98
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG + I +NFAF+ ++A A+ + + + I V+
Sbjct: 99 EYGTVTECAIIKNFAFIHMSNSDEAKDAIKGLDNTDFQGKRIHVQ 143
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 70 DLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 126
+L LF YG V + FAFI+M + +A+DAI+GLD T+F +G+R+ V+ +K
Sbjct: 92 ELRTLFEEYGTVTECAIIKNFAFIHMSNSDEAKDAIKGLDNTDF--QGKRIHVQMSK 146
>gi|108708089|gb|ABF95884.1| Pre-mRNA splicing factor SF2, putative, expressed [Oryza sativa
Japonica Group]
gi|215692748|dbj|BAG88168.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218192809|gb|EEC75236.1| hypothetical protein OsI_11526 [Oryza sativa Indica Group]
gi|222624911|gb|EEE59043.1| hypothetical protein OsJ_10806 [Oryza sativa Japonica Group]
Length = 286
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 78/173 (45%), Gaps = 23/173 (13%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG++ +D+K G+AF+ +D RDAE+A G D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAEEACAGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPST--------NTRPSKTLFVINFDPY 161
F G RLRVE RG GGSS RPS +R S+ ++ P
Sbjct: 67 GYNF--DGHRLRVEPAHGGRG----NGGSSFDRPSNFGGGGRRGVSRHSEYRVLVTGLPS 120
Query: 162 HTRTRDLERHFEPYGKIISVRIRR----NFAFVQYEVQEDATRALDATNMSKL 210
+DL+ H G + + R V Y +D A+ + S+
Sbjct: 121 SASWQDLKDHMRKAGDVCFSEVYREGGGTVGIVDYTNYDDMKYAIKKLDDSEF 173
>gi|5815237|gb|AAD52611.1| splicing factor SR1C [Arabidopsis thaliana]
Length = 276
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 88/207 (42%), Gaps = 33/207 (15%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R ++ GN D R+ ++E LF +YG V ++D+K G+AF+ DD RDAEDAI G D
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN-------------------TRPS 150
+F G RLRVE G RR + +R S
Sbjct: 67 GYDF--DGHRLRVELA---HGGRRSSDDTRGSFNGGGRGGGRGRGDGRGDGGSRGPSRRS 121
Query: 151 KTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN----FAFVQYEVQEDATRALDATN 206
+ ++ P +DL+ H G + ++ R+ V Y ED AL +
Sbjct: 122 EFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLD 181
Query: 207 MSKLTDRVISVEYAVRDDDDRRNGHSP 233
++ + + VR+ D R++ SP
Sbjct: 182 DTEFRNAFSNGYVRVREYDSRKDSRSP 208
>gi|270015083|gb|EFA11531.1| hypothetical protein TcasGA2_TC016051 [Tribolium castaneum]
Length = 303
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 86/182 (47%), Gaps = 25/182 (13%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
+F G Y R+ D+E+ FR+YG++ V MK+GFAF+ DD RDA+DA+ L+ E
Sbjct: 5 VFVGGLTYRVRERDIEKFFRKYGRIKEVAMKNGFAFVEFDDYRDADDAVYELNGKEL--L 62
Query: 117 GRRLRVEWTKHE-RGIRRPGGGSSA------------RRPSTNTR-----PSKTLFVINF 158
G R+ VE + RG + G R P + P++T + +
Sbjct: 63 GERVSVERARGTPRGCDQWRGSGGRGYGPPRGRSRDNREPDMRSHDRYGPPTRTEYRLIV 122
Query: 159 DPYHTRT--RDLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDR 213
+ +R +DL+ + G++ + + RRN V++ D A+D + ++L R
Sbjct: 123 ENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFASYSDMKNAIDKLDDTELNGR 182
Query: 214 VI 215
I
Sbjct: 183 RI 184
Score = 45.1 bits (105), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 160 PYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 219
Y R RD+E+ F YG+I V ++ FAFV+++ DA A+ N +L +SVE
Sbjct: 11 TYRVRERDIEKFFRKYGRIKEVAMKNGFAFVEFDDYRDADDAVYELNGKELLGERVSVER 70
Query: 220 A 220
A
Sbjct: 71 A 71
>gi|432882989|ref|XP_004074178.1| PREDICTED: uncharacterized protein LOC101163182 isoform 2 [Oryzias
latipes]
Length = 384
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 83/187 (44%), Gaps = 26/187 (13%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M ++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ E
Sbjct: 1 MSRVYIGRLSYRAREKDVERFFKGYGKILEVDLKNGYGFVEFDDPRDADDAVYDLNGKEL 60
Query: 114 GRKGRRLRVEWTK---------------HERGIRRPGGGSSARRPSTN-----TRPSKTL 153
G R+ VE TK + R G R + R L
Sbjct: 61 C--GERVIVEHTKGPRRDGGYGGGGRNLDQESSRSSKNGGYGRWGGRDRYGPPVRTDYRL 118
Query: 154 FVINFDPYHTRTRDLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKL 210
V N +DL+ + G++ + + RRN +++ D RAL+ + +++
Sbjct: 119 IVENLSS-RCSWQDLKDYMRQAGEVTYADTHKGRRNEGVIEFRQYSDMKRALEKLDGTEV 177
Query: 211 TDRVISV 217
R I +
Sbjct: 178 NGRKIRL 184
>gi|410976794|ref|XP_003994798.1| PREDICTED: serine/arginine-rich splicing factor 9 [Felis catus]
Length = 340
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 82/160 (51%), Gaps = 14/160 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R+ DLE LF +YG++ +++K+ FAF+ +D RDAEDAI G +
Sbjct: 135 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 194
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERH 171
++G+ RLRVE+ + G R GG R TR S +++ P +DL+ H
Sbjct: 195 DYGQC--RLRVEFPR-TYGSR--GGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDH 249
Query: 172 FEPYGKIISVRIRRN-FAFVQYEVQED---ATRALDATNM 207
G + ++++ V+Y +ED A R LD T
Sbjct: 250 MREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 289
>gi|55792397|gb|AAV65309.1| splicing factor SF2-like protein [Hordeum vulgare subsp. vulgare]
Length = 245
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 74/167 (44%), Gaps = 16/167 (9%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG++ +D+K GFAF+ +D RDAEDAI+G D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRDAEDAIQGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERG--IRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRD 167
F G RLRVE R P R +R ++ ++ P +D
Sbjct: 67 GYNF--DGNRLRVELAHGGRANSSSLPNSHGGGGRRGGVSRHTEYRVLVTGLPSSASWQD 124
Query: 168 LERHFEPYGKIISVRIRRNFA-------FVQYEVQEDATRALDATNM 207
L+ H G + + R + Y+ + A R LD T
Sbjct: 125 LKDHMRKAGDVCFSEVYREVVGTIGIVDYTNYDDMKYAIRKLDDTEF 171
>gi|302781020|ref|XP_002972284.1| hypothetical protein SELMODRAFT_97566 [Selaginella moellendorffii]
gi|300159751|gb|EFJ26370.1| hypothetical protein SELMODRAFT_97566 [Selaginella moellendorffii]
Length = 288
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 79/181 (43%), Gaps = 31/181 (17%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+S+++ LF +YG++ +D+K G+AFI DD RDAEDAI+ D
Sbjct: 6 RTIYVGNLPGDVRESEIDDLFYKYGRILDIDLKLPPRPPGYAFIEFDDPRDAEDAIKARD 65
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN----------------TRPSKTL 153
F G RLRVE+ H G P G S +R S+
Sbjct: 66 GYVF--DGHRLRVEFA-HSGGRGHPSYGGDRHSNSYRGGGGGGGGGGGGGRGVSRRSEYR 122
Query: 154 FVINFDPYHTRTRDLERHFEPYGKIISVRIRRN-------FAFVQYEVQEDATRALDATN 206
V+ P +DL+ H G + ++ R F Y+ ++A R LD T
Sbjct: 123 VVVTGLPSSASWQDLKDHMRTAGDVCFAQVFRESNGTRGIVDFTNYDDMKNAIRKLDDTE 182
Query: 207 M 207
Sbjct: 183 F 183
>gi|194374487|dbj|BAG57139.1| unnamed protein product [Homo sapiens]
Length = 158
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 5/88 (5%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M ++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 1 MLRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDL 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSAR 141
G R+ VE H RG RR G S R
Sbjct: 61 --CGERVIVE---HARGPRRDGSYGSGR 83
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 161 YHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
Y R RD+ER F+ YGKI+ V ++ + FV+++ DA A+ N L + VE+A
Sbjct: 11 YQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHA 70
>gi|391330558|ref|XP_003739725.1| PREDICTED: serine/arginine-rich splicing factor 1-like [Metaseiulus
occidentalis]
Length = 217
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 13/155 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS----GFAFIYMDDERDAEDAIRGLDRTE 112
++ GN D R D+E LF +YGK+ +D+K+ FAF+ +D RDAEDA+ D +
Sbjct: 9 VYVGNLPPDIRTKDIEDLFHKYGKITFIDLKNRRGPPFAFVEFEDPRDAEDAVSARDGYD 68
Query: 113 FGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHF 172
+ G +LRVE+ + RP GG S R R + V P + +DL+ H
Sbjct: 69 Y--DGYKLRVEFPRGNSA--RPRGGPSRGRGPPARRSQYRVIVTGLPPTGS-WQDLKDHM 123
Query: 173 EPYGKIISVRIRRN----FAFVQYEVQEDATRALD 203
G + + ++ F++YE + A + LD
Sbjct: 124 REAGDVCYADVYKDGTGVVEFLRYEDMKYAVKKLD 158
>gi|442749577|gb|JAA66948.1| Putative alternative splicing factor srp55/b52/srp75 rrm
superfamily [Ixodes ricinus]
Length = 268
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 81/180 (45%), Gaps = 29/180 (16%)
Query: 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 112
M +F G+ R+ DL++ F+ YG+V + +K+GF F+ DD RDA+DAI L+ E
Sbjct: 1 MTTRVFIGHLSCQVREKDLDKFFKGYGRVGDIHLKNGFGFVEFDDHRDADDAISDLNGKE 60
Query: 113 FGRKGRRLRVEWTKHERGIRRPGG------------GSSARRPSTNTR---PSKT---LF 154
G R+ VE R R PGG +TR P +T L
Sbjct: 61 L--LGERVSVELAYGSR--RGPGGRIVPPRPDWRSPPPRRPFAPRDTRFGPPQRTEYQLI 116
Query: 155 VINFDPYHTRTRDLERHFEPYGKII---SVRIRRN---FAFVQYEVQEDATRALDATNMS 208
V N H +DL+ + G++ + +IR N F Y ++A LD T++S
Sbjct: 117 VENLSS-HVSWQDLKDYMRQAGEVTYADAHKIRPNEGVVEFANYSDMKNAISKLDNTDLS 175
>gi|348519443|ref|XP_003447240.1| PREDICTED: hypothetical protein LOC100690923 isoform 1 [Oreochromis
niloticus]
Length = 390
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 11/171 (6%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M ++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ E
Sbjct: 1 MSRVYIGRLSYRAREKDVERFFKGYGKILEVDLKNGYGFVEFDDPRDADDAVYDLNGKEL 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTR----PSKTLFVINFDPYHTRT--RD 167
G R+ VE T+ R GGG P +T + + + +R +D
Sbjct: 61 C--GERVIVEHTRGPRRDGGYGGGGGGYGRWGGRDRYGPPIRTDYRLIVENLSSRCSWQD 118
Query: 168 LERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
L+ + G++ + + R+N +++ + D RAL+ + +++ R I
Sbjct: 119 LKDYMRQAGEVTYADTHKGRKNEGVIEFRLYSDMKRALEKLDGTEVNGRKI 169
>gi|302847745|ref|XP_002955406.1| hypothetical protein VOLCADRAFT_45192 [Volvox carteri f.
nagariensis]
gi|300259248|gb|EFJ43477.1| hypothetical protein VOLCADRAFT_45192 [Volvox carteri f.
nagariensis]
Length = 245
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 48/72 (66%), Gaps = 7/72 (9%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG-----FAFIYMDDERDAEDAIRGLDRT 111
+F GN D R+ ++E LF +YG++ VD+K G FAF+ +D+RDA DA+RG D
Sbjct: 1 VFVGNLPMDVREREVEDLFFKYGRIRSVDLKIGPRPPAFAFVEFEDQRDAYDAVRGRDGI 60
Query: 112 EFGRKGRRLRVE 123
EF +G+RLRVE
Sbjct: 61 EF--QGQRLRVE 70
>gi|302804889|ref|XP_002984196.1| hypothetical protein SELMODRAFT_119951 [Selaginella moellendorffii]
gi|300148045|gb|EFJ14706.1| hypothetical protein SELMODRAFT_119951 [Selaginella moellendorffii]
Length = 298
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 79/181 (43%), Gaps = 31/181 (17%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+S+++ LF +YG++ +D+K G+AFI DD RDAEDAI+ D
Sbjct: 6 RTIYVGNLPGDVRESEIDDLFYKYGRILDIDLKLPPRPPGYAFIEFDDPRDAEDAIKARD 65
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPS----------------TNTRPSKTL 153
F G RLRVE+ H G P G S +R S+
Sbjct: 66 GYVF--DGHRLRVEFA-HSGGRGHPSYGGDRHSNSYRGGGGGGGGGGGGGRGVSRRSEYR 122
Query: 154 FVINFDPYHTRTRDLERHFEPYGKIISVRIRRN-------FAFVQYEVQEDATRALDATN 206
V+ P +DL+ H G + ++ R F Y+ ++A R LD T
Sbjct: 123 VVVTGLPSSASWQDLKDHMRTAGDVCFAQVFRESNGTRGIVDFTNYDDMKNAIRKLDDTE 182
Query: 207 M 207
Sbjct: 183 F 183
>gi|281340832|gb|EFB16416.1| hypothetical protein PANDA_020890 [Ailuropoda melanoleuca]
Length = 215
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 17/163 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R+ DLE LF +YG++ +++K+ FAF+ +D RDAEDAI G +
Sbjct: 10 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 69
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN---TRPSKTLFVINFDPYHTRTRDL 168
++G+ RLRVE+ R GG + R N TR S +++ P +DL
Sbjct: 70 DYGQC--RLRVEFP------RTYGGRAGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDL 121
Query: 169 ERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
+ H G + ++++ V+Y +ED AL + +K
Sbjct: 122 KDHMREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 164
>gi|341889616|gb|EGT45551.1| hypothetical protein CAEBREN_06053 [Caenorhabditis brenneri]
Length = 260
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 49/75 (65%), Gaps = 6/75 (8%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG----FAFIYMDDERDAEDAIRGLDR 110
+ ++ GN D R ++E +F +YG++ +D+KSG FAF+ +D RDAEDA+R D
Sbjct: 10 QKVYVGNLPGDVRDKEVEDIFHKYGRIKYIDIKSGRGPAFAFVEFEDHRDAEDAVRARDG 69
Query: 111 TEFGRKGRRLRVEWT 125
EF GRR+RVE+T
Sbjct: 70 YEF--DGRRIRVEFT 82
>gi|301790878|ref|XP_002930446.1| PREDICTED: splicing factor, arginine/serine-rich 9-like [Ailuropoda
melanoleuca]
Length = 253
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 82/161 (50%), Gaps = 13/161 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R+ DLE LF +YG++ +++K+ FAF+ +D RDAEDAI G +
Sbjct: 48 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 107
Query: 112 EFGRKGRRLRVEWTKHERG-IRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLER 170
++G+ RLRVE+ + G P GG R TR S +++ P +DL+
Sbjct: 108 DYGQC--RLRVEFPRTYGGRAGWPRGG----RNGPPTRRSDFRVLVSGLPPSGSWQDLKD 161
Query: 171 HFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
H G + ++++ V+Y +ED AL + +K
Sbjct: 162 HMREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 202
>gi|71996524|ref|NP_495307.3| Protein RSP-5, isoform a [Caenorhabditis elegans]
gi|50897847|sp|Q10021.3|RSP5_CAEEL RecName: Full=Probable splicing factor, arginine/serine-rich 5;
AltName: Full=CeSC35-2; AltName: Full=RNA-binding
protein srp-3
gi|351064335|emb|CCD72697.1| Protein RSP-5, isoform a [Caenorhabditis elegans]
Length = 208
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 41/70 (58%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y+AR+ D+ER + YGK++ + MK GFAF+ +D RDAEDA LD
Sbjct: 4 LYLGKIPYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTMEGS 63
Query: 117 GRRLRVEWTK 126
RL VE +
Sbjct: 64 SMRLVVEMAR 73
>gi|326433655|gb|EGD79225.1| splicing factor [Salpingoeca sp. ATCC 50818]
Length = 255
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 17/160 (10%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFG 114
R I+ GN YD R+ +++ LF ++G+++ + +K +AF+ +D RDAEDA+R D EFG
Sbjct: 4 RRIYVGNLPYDIREREIDDLFYKFGRIEEITIKGPYAFVSFEDSRDAEDAVRRRDGYEFG 63
Query: 115 RKGRRLRVEWT---KHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERH 171
G RLRVE+ + ERG R G S R + P + +D++
Sbjct: 64 --GGRLRVEFANGGRRERGARAFNGQHSEFRLRVSNLPRTASW-----------QDVKDF 110
Query: 172 FEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
G+++ + + V++ ++D AL N KL
Sbjct: 111 CREAGEVLFAEVFHDGTGLVEFRREDDMEWALRNLNERKL 150
>gi|147904116|ref|NP_001079647.1| serine/arginine-rich splicing factor 6 [Xenopus laevis]
gi|28436899|gb|AAH46668.1| MGC52985 protein [Xenopus laevis]
Length = 667
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 86/176 (48%), Gaps = 20/176 (11%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y R+ DL+R F YGK+ +D+K+G+ F+ +D RDA+DA+ L+ +
Sbjct: 4 VYIGRLGYHVREKDLQRFFGGYGKLLEIDLKNGYGFVEFEDSRDADDAVYELNGKDLC-- 61
Query: 117 GRRLRVEWTKHERGIR--RPGGGSSARRPSTNTR--------PSKTLFVINFDPYHTRT- 165
G R+ +E H RG R R G G +R N R P +T F + + +R
Sbjct: 62 GERVIIE---HARGPRRDRDGYGYGSRSGYRNQRTGRDKYGPPVRTEFRLVVENLSSRCS 118
Query: 166 -RDLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
+DL+ G++ + + R N +++ D RA++ + +++ R I +
Sbjct: 119 WQDLKDFMRQAGEVTYADAHKERANEGVIEFRSYSDMKRAVEKLDGTEINGRRIRL 174
>gi|449485688|ref|XP_004157245.1| PREDICTED: pre-mRNA-splicing factor SF2-like [Cucumis sativus]
Length = 322
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 99/225 (44%), Gaps = 27/225 (12%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R ++E LF +YG + +D+K G+AF+ +D RDAEDAI G D
Sbjct: 7 RTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAEDAIYGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLF--VINFDPYHTRTRD 167
+F G RLRVE+ RG S S P +T + ++ P +D
Sbjct: 67 GYKF--DGCRLRVEFAHGGRGHSSSVDRYSRSGSSRGGVPRRTDYRVLVTGLPSSASWQD 124
Query: 168 LERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR--DDD 225
L+ H G + + R+ + +D TN + +YA+R DD
Sbjct: 125 LKDHMRRAGDVCFSEVFRD--------RGGMAGIVDYTNYDDM-------KYAIRKLDDS 169
Query: 226 DRRNGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPY 270
+ RN S R + D S SP R S DY R SRSPY
Sbjct: 170 EFRNAFSRAYVRVKEYDSRHSYSRSPSLDSRRS-DYSRSPSRSPY 213
>gi|308510478|ref|XP_003117422.1| CRE-RSP-2 protein [Caenorhabditis remanei]
gi|308242336|gb|EFO86288.1| CRE-RSP-2 protein [Caenorhabditis remanei]
Length = 281
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 83/189 (43%), Gaps = 21/189 (11%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M ++ G A D+E FR YGK+ V MK+GF F+ D+RDA+DA+ L+ +
Sbjct: 1 MVRVYIGRLPNRATDRDVEHFFRGYGKLVDVIMKNGFGFVDFQDQRDADDAVHDLNGKDL 60
Query: 114 GRKGRRLRVEWTKHERGI--RRPGGGSSARRPSTN-----------TRPSKTLFVINFDP 160
G R+ +E+ + + G R GGG R P+ +RP T F + D
Sbjct: 61 C--GERVILEFPRRKVGYNEERSGGGYRGREPTFRRGGERQFSNRYSRPCSTRFRLVVDN 118
Query: 161 YHTR--TRDLERHFEPYGK--IISVRIRRNF--AFVQYEVQEDATRALDATNMSKLTDRV 214
TR +D++ H G S +RN A V + +D A++ +L R
Sbjct: 119 LSTRYSWQDIKDHIRKLGIEPTYSEAHKRNVNQALVCFSTHDDLRDAMNKLQGEELNGRK 178
Query: 215 ISVEYAVRD 223
+ RD
Sbjct: 179 LKCTDETRD 187
>gi|453089609|gb|EMF17649.1| RNA-binding domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 337
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 83/186 (44%), Gaps = 27/186 (14%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKSGFAFIYMDDERDAEDAIRGLD 109
++ GN ++ +LE F R+G+V D GF FI + A +AIRGLD
Sbjct: 149 LYVGNLFFEVTAQELEAEFGRFGEVVNSRIVKDPTGSSRGFGFIELSTTEAAMNAIRGLD 208
Query: 110 RTEFGRKGRRLRVEWTKHERGI--RRPGGGSSAR-----RPSTNTRPSKTLFVINFDPYH 162
+ F +GRR+ V+ KH R + PGG + R R + PSKTLF+ N Y
Sbjct: 209 QKVF--QGRRMLVQ--KHVRKDKPKSPGGSYAPRDRDAPRDRASASPSKTLFIGNMS-YE 263
Query: 163 TRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRV 214
RDL F ++ VR+ R FA + E A +A + + R
Sbjct: 264 MSDRDLNNLFREIKNVLDVRVAIDRRSGQPRGFAHADFTDVESAEKAKEFLGSKMVYGRQ 323
Query: 215 ISVEYA 220
+ V++A
Sbjct: 324 LRVDFA 329
>gi|312088410|ref|XP_003145851.1| arginine/serine-rich splicing factor 3 [Loa loa]
gi|307758983|gb|EFO18217.1| arginine/serine-rich splicing factor 3 [Loa loa]
Length = 228
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 95/223 (42%), Gaps = 33/223 (14%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS----GFAFIYMDDERDAEDAIRGLDRTE 112
I+ GN R D+E +F +YGKV VD+K FAF+ +D RDAEDA+RG D +
Sbjct: 7 IYVGNLPTTVRAKDVEDIFSKYGKVLYVDLKDRRQPYFAFVEFEDARDAEDAVRGRDGYD 66
Query: 113 FGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTL------------FVINFDP 160
+ +G RLRVE+ + G R + +R + +++ P
Sbjct: 67 Y--EGYRLRVEFPRGLGPRGPGGRPYDTGRNLSLSRNASGGGSSSGGRRANYRVIVSGLP 124
Query: 161 YHTRTRDLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKLTDRVISVEY 219
+DL+ H G + + R+ V+Y ED AL + +K Y
Sbjct: 125 ASGSWQDLKDHMREAGDVCYTDVLRDGTGIVEYGRYEDMKYALRKLDDTKFKSHEGETSY 184
Query: 220 A-VRDDDDRRNGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDY 261
VR+D NG S +R RSP R RGSP Y
Sbjct: 185 IRVRED----NGESRAHSRSRSP---------VGRASRGSPQY 214
>gi|85117951|ref|XP_965346.1| hypothetical protein NCU02959 [Neurospora crassa OR74A]
gi|28927154|gb|EAA36110.1| hypothetical protein NCU02959 [Neurospora crassa OR74A]
Length = 606
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 105/264 (39%), Gaps = 41/264 (15%)
Query: 58 FCGNFEYDARQSDLERLFRRYGKVDRV-------DMKSGFAFIYMDDERDAEDAIRGLDR 110
F N +DA + L+ F ++G V V + G+ F+ E+A +D
Sbjct: 353 FVRNIVFDATEEHLKGAFEKFGNVTDVFLARDPRGLSKGYGFVTFATREALEEACSQVDG 412
Query: 111 TEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLER 170
+ + GRR+ VE + + R S PS LF+ N PY T +L
Sbjct: 413 SFW--HGRRISVEPRR-----------AKVNRGSAVGEPSACLFIGNI-PYETTDAELNN 458
Query: 171 HFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV- 221
F + VR+ R FA + E A AL+ ++L +R I ++YA
Sbjct: 459 IFVGIDGLKDVRVAVDRATGWPRGFAHADFVDVEAAVNALEKLQGTQLGERTIKIDYAQP 518
Query: 222 ------RDDDDRRNGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERG 275
R+++ R + P + RD G+R Y R+ G+ Y R Y R+ G
Sbjct: 519 AAARQPRENNGERREYRPRQQRD-----GQRDGQRSYNRDGGNRSYNREGGNRNYNRDGG 573
Query: 276 SPDYGRVRSPSPYRRDRGSPDYGR 299
+ Y R Y R+ G +Y R
Sbjct: 574 NRSYNREGGDRSYNREGGDRNYNR 597
>gi|294461096|gb|ADE76115.1| unknown [Picea sitchensis]
Length = 298
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 77/173 (44%), Gaps = 25/173 (14%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R ++ GN D R+ D+E +F +YG V ++D+K G+ FI ++ RDAEDAIRG D
Sbjct: 7 RILYVGNLPVDFRERDIEDIFHKYGPVVKIDLKFPPRPPGYCFIEFENARDAEDAIRGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERGIR--------RPGGGSSARRPSTNTRPSKTLFVINFDPY 161
+ G RLRVE RG GGG R ++ T+ + P
Sbjct: 67 GYDI--DGHRLRVELAHGGRGALSVDRYSSFSSGGGRRNGRLQSHCDYRVTISGL---PS 121
Query: 162 HTRTRDLERHFEPYGKIISVRIRRN-------FAFVQYEVQEDATRALDATNM 207
+DL+ H G + ++ R+ + Y+ + A R LD T
Sbjct: 122 SASWQDLKDHMRRAGDVTFAQVFRDSNGTTGVVDYTNYDDMKYAIRKLDDTEF 174
>gi|196004628|ref|XP_002112181.1| hypothetical protein TRIADDRAFT_23659 [Trichoplax adhaerens]
gi|190586080|gb|EDV26148.1| hypothetical protein TRIADDRAFT_23659 [Trichoplax adhaerens]
Length = 266
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 73/169 (43%), Gaps = 16/169 (9%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M ++ G Y AR+ D+E FR +GK+ V +K+GF F+ DD RDAEDAI L+ +
Sbjct: 1 MTRVYVGRLSYRARERDVEHFFRGFGKIREVTLKNGFGFVEFDDPRDAEDAIYELNNRDL 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRP-------SKTLFVINFDPYHTRTR 166
G R+ VE+ K R R G RP ++ VIN R
Sbjct: 61 --MGERVIVEFAKGTRYDDRRGAYPLITPSYLLFRPRFGRPRNTEWRLVINNLSSRATWR 118
Query: 167 DLERHFEPYGKIISVRIRRNFA-------FVQYEVQEDATRALDATNMS 208
D++ + G + + F Y+ +DA + LD T +
Sbjct: 119 DIKDYMRQAGDVTFADAHKQLGEGRGVVDFATYDDMKDALKRLDGTELC 167
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%)
Query: 161 YHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
Y R RD+E F +GKI V ++ F FV+++ DA A+ N L + VE+A
Sbjct: 11 YRARERDVEHFFRGFGKIREVTLKNGFGFVEFDDPRDAEDAIYELNNRDLMGERVIVEFA 70
Query: 221 VRDDDDRRNGHSP 233
D R G P
Sbjct: 71 KGTRYDDRRGAYP 83
>gi|5815236|gb|AAD52610.1| splicing factor SR1B [Arabidopsis thaliana]
Length = 289
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 88/207 (42%), Gaps = 33/207 (15%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R ++ GN D R+ ++E LF +YG V ++D+K G+AF+ DD RDAEDAI G D
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN-------------------TRPS 150
+F G RLRVE G RR + +R S
Sbjct: 67 GYDF--DGHRLRVELA---HGGRRSSDDTRGSFNGGGRGGGRGRGDGRGDGGSRGPSRRS 121
Query: 151 KTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN----FAFVQYEVQEDATRALDATN 206
+ ++ P +DL+ H G + ++ R+ V Y ED AL +
Sbjct: 122 EFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLD 181
Query: 207 MSKLTDRVISVEYAVRDDDDRRNGHSP 233
++ + + VR+ D R++ SP
Sbjct: 182 DTEFRNAFSNGYVRVREYDSRKDSRSP 208
>gi|215741122|dbj|BAG97617.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 247
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 73/162 (45%), Gaps = 15/162 (9%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG++ +D+K GFAF+ +D RDAEDAIRG D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGFAFVEFEDPRDAEDAIRGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN-TRPSKTLFVINFDPYHTRTRDL 168
F G RLRVE RG S +R ++ ++ P +DL
Sbjct: 67 GYNF--DGNRLRVELAHGGRGNSSSFNNSGGGGRRGGVSRHTEYRVLVTGLPSSASWQDL 124
Query: 169 ERHFEPYGKIISVRIRR----NFAFVQYEVQED---ATRALD 203
+ H G + + R V Y +D A R LD
Sbjct: 125 KDHMRNAGDVCYSEVYREGGGTIGIVDYTNYDDMKYAIRKLD 166
>gi|440893251|gb|ELR46093.1| Serine/arginine-rich splicing factor 6 [Bos grunniens mutus]
Length = 348
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 87/181 (48%), Gaps = 27/181 (14%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y+ R+ D++R F YG++ +D+K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELC-- 61
Query: 117 GRRLRVEWTKHERGIRRPGGGS--------------SARRPSTNTR---PSKTLFVINFD 159
G R+ VE H RG RR G S+RR S + P +T F + +
Sbjct: 62 GERVIVE---HARGPRRDRGDWVVVSSHDKGGGGGYSSRRTSGRDKYGPPVRTEFRLIVE 118
Query: 160 PYHTRT--RDLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRV 214
+R +DL+ G++ + + R N +++ D RALD + +++ R
Sbjct: 119 NLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRN 178
Query: 215 I 215
I
Sbjct: 179 I 179
Score = 44.7 bits (104), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 161 YHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
Y+ R +D++R F YG+++ + ++ + FV++E DA A+ N +L + VE+A
Sbjct: 11 YNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHA 70
>gi|170591727|ref|XP_001900621.1| SF2 [Brugia malayi]
gi|158591773|gb|EDP30376.1| SF2, putative [Brugia malayi]
Length = 298
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 98/215 (45%), Gaps = 24/215 (11%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG----FAFIYMDDERDAEDAIRGLDRTE 112
+F GN D +Q DLE +F +YG+++ +D+K FAFI DD RDA DA+ G D +
Sbjct: 9 VFVGNLPSDVKQRDLEDIFYKYGRINFIDIKFTRDVPFAFIEFDDPRDARDAVHGRDGYD 68
Query: 113 FGRKGRRLRVEWTKHERGIRRP-----GGGSSARRPSTNTRPSKTLFVINFDPYHTRTRD 167
F G R+RVE T+ G S + R R S +++ P +D
Sbjct: 69 F--DGCRIRVELTRGVGPRGPGGRPLYGPDSRSPRRGPPPRRSGYRVIVSGLPDTGSWQD 126
Query: 168 LERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDD 226
L+ H G+I + R+ V+Y ED AL + +K V Y +R +
Sbjct: 127 LKDHMRDAGEICYADVFRDGTGVVEYTNYEDMKYALRKLDDTKFKSHEGEVTY-IRVKEA 185
Query: 227 RRNGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDY 261
N SP+R R RS +P R+ R SP Y
Sbjct: 186 NIN----------SPNRSRSRSHTP-RKTRSSPKY 209
>gi|410906739|ref|XP_003966849.1| PREDICTED: RNA-binding protein 4.1-like [Takifugu rubripes]
Length = 343
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 70/165 (42%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M IF GN + + ++E LF +YG V +AF++M+D + A AIR L +
Sbjct: 1 MVKIFIGNLSPETEKDEVEALFVQYGTVTECAKYKNYAFVHMEDRKSATKAIRELHLHKL 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
GR + VE + R G + N FD ++L FE
Sbjct: 61 --NGRPINVELS------RGKGHQGPVKIHIANVEK-------GFD------KELRELFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG + I +NFAFV E+A A+ + S+ + I V+
Sbjct: 100 EYGTVSECAIVKNFAFVHMPNSEEAMDAIQGLDNSEFQGKRIHVQ 144
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 70 DLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 126
+L LF YG V + FAF++M + +A DAI+GLD +EF +G+R+ V+ +K
Sbjct: 93 ELRELFEEYGTVSECAIVKNFAFVHMPNSEEAMDAIQGLDNSEF--QGKRIHVQISK 147
>gi|383848642|ref|XP_003699957.1| PREDICTED: serine/arginine-rich splicing factor 4-like [Megachile
rotundata]
Length = 418
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 70/168 (41%), Gaps = 43/168 (25%)
Query: 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 112
M +F G Y R+ DL + FR+YG++ V MK+GFAF+ ++ +
Sbjct: 1 MSTRVFVGGLTYRVRERDLVKFFRKYGRIKEVAMKNGFAFVV---------SLMWFNCFF 51
Query: 113 FGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHF 172
+ G R+ V GG PY TR RDLER F
Sbjct: 52 YSMVGTRVYV-------------GGL---------------------PYGTRERDLERFF 77
Query: 173 EPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
YG+ V I+ + FV+++ DA A+ N +L I+VE A
Sbjct: 78 RGYGRFRDVLIKNGYGFVEFDDYRDADDAVYELNGKELLGERITVERA 125
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 36 LGFRRSHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYM 95
F S + + + ++ G Y R+ DLER FR YG+ V +K+G+ F+
Sbjct: 38 FAFVVSLMWFNCFFYSMVGTRVYVGGLPYGTRERDLERFFRGYGRFRDVLIKNGYGFVEF 97
Query: 96 DDERDAEDAIRGLDRTEFGRKGRRLRVE 123
DD RDA+DA+ L+ E G R+ VE
Sbjct: 98 DDYRDADDAVYELNGKEL--LGERITVE 123
>gi|429962103|gb|ELA41647.1| hypothetical protein VICG_01280 [Vittaforma corneae ATCC 50505]
Length = 344
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 105/240 (43%), Gaps = 51/240 (21%)
Query: 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAE 102
E R +F + YD R+ DL + +R G+V RV + GFA++ DA+
Sbjct: 90 EETQRTVFIKDIGYDLREDDLRQQMQRLGEVIRVTIPMTHDLRRNKGFAYVEFKRLADAQ 149
Query: 103 DAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYH 162
A++ LD TE GR++ V K P N R TLFV N Y
Sbjct: 150 KALK-LDGTELL--GRKVAVFQAK----------------PREN-RKIYTLFVKNL-SYT 188
Query: 163 TRTRDLERHFEPYGKIISVRI---------RRNFAFVQYEVQEDATRALDATNMSKLTDR 213
T +L+ +FE +GKI ++ + + F F++Y + TRAL + L +R
Sbjct: 189 TTKSELKEYFERFGKIYNISLPVDNENTERNKGFCFIEYTEPDPITRALKGKHT--LNER 246
Query: 214 VISVEYAVRDDDDRRNGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRE 273
+ Y + + DRN+ RS DR RS + E S D + S +S +++E
Sbjct: 247 TL---YVI------EGNKNEDRNKKRSTDRLYGRSKNTNSDE--SSDISQSSHKSRFQKE 295
>gi|348532825|ref|XP_003453906.1| PREDICTED: serine/arginine-rich splicing factor 9-like [Oreochromis
niloticus]
Length = 241
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 82/160 (51%), Gaps = 11/160 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG-----FAFIYMDDERDAEDAIRGLDRT 111
I+ GN D ++ D+E LF +YGK+ +++K+ FAF+ +D RDA+DA+ G R
Sbjct: 6 IYVGNLPMDVQERDIEDLFYKYGKIREIELKNNRGTIPFAFVRFEDPRDADDAVYG--RN 63
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERH 171
+G +LRVE+ + + G GGG+ R TR S+ +++ P +DL+ H
Sbjct: 64 GYGYGDSKLRVEYPRSKPGPMGGGGGAPRGRFGPPTRRSEFRVIVSGLPPSGSWQDLKDH 123
Query: 172 FEPYGKIISVRIRRN----FAFVQYEVQEDATRALDATNM 207
G + ++R+ F++ E E A R LD T
Sbjct: 124 MREAGDVCFADVQRDGEGVVEFLRREDMEYALRRLDGTEF 163
>gi|170045710|ref|XP_001850441.1| arginine/serine-rich splicing factor [Culex quinquefasciatus]
gi|167868651|gb|EDS32034.1| arginine/serine-rich splicing factor [Culex quinquefasciatus]
Length = 241
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 101/237 (42%), Gaps = 54/237 (22%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG----FAFIYMDDERDAEDAIRGLDRTE 112
I+ GN D R D++ LF ++GKV VD+K+ FAF+ +D RDA+DA++ D +
Sbjct: 10 IYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPPFAFVEFEDNRDADDAVKARDGYD 69
Query: 113 FGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN-----------------------TRP 149
+ G RLRVE+ + GGG + R S R
Sbjct: 70 Y--DGYRLRVEFPR--------GGGPGSYRGSRGSTSGDRGGGSSGRDRGGNNRGPPARR 119
Query: 150 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMS 208
S+ V+ P +DL+ H G + + ++ V+Y ED A+ + S
Sbjct: 120 SQFRVVVTGLPASGSWQDLKDHMREAGDVCFADVYKDGTGVVEYLRHEDMKYAIKKLDDS 179
Query: 209 KLTDRVISVEYA-VRDD---DDRRNGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDY 261
+ V Y VR+D DDRR G R RS SP RR RG+P Y
Sbjct: 180 RFRSHEGEVAYIRVREDSGNDDRRGGGEH-----------RDRSYSP-RRRRGTPTY 224
>gi|388518723|gb|AFK47423.1| unknown [Medicago truncatula]
Length = 340
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 73/161 (45%), Gaps = 21/161 (13%)
Query: 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI--------RRNFAFVQYEVQEDATR 200
P L+V P T+ R+LE+HF GK++ V + R F FV + E+A R
Sbjct: 43 PGNNLYVTGLSPRITK-RELEKHFSAKGKVVDVHLVVDPWTRESRGFGFVTMDTLEEADR 101
Query: 201 ALDATNMSKLTDRVISVEYAVRDDDDRRN-----GHSPDRNRDRSPDRGRRRSP--SPYR 253
+ N S L RVI+VE A R G R R RSP RRSP SPYR
Sbjct: 102 CVKYLNRSVLEGRVITVEKARRRRGRTPTPGKYLGLKTIRGRRRSPSYSPRRSPSYSPYR 161
Query: 254 RERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSP-YRRDRG 293
R Y SRS SPDY R RS SP YRR R
Sbjct: 162 RSYNRSPYSSDHSRS----RSYSPDYRRRRSYSPDYRRRRA 198
>gi|268531976|ref|XP_002631116.1| C. briggsae CBR-RSP-2 protein [Caenorhabditis briggsae]
Length = 279
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 83/189 (43%), Gaps = 21/189 (11%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M ++ G A D+E FR YGK+ V MK+GF F+ ++RDA+DA+ L+ +
Sbjct: 1 MVRVYIGRLPNRATDRDVEHFFRGYGKLSDVIMKNGFGFVDFQEQRDADDAVHDLNGKDL 60
Query: 114 GRKGRRLRVEWTKHERGI--RRPGGGSSARRPSTN-----------TRPSKTLFVINFDP 160
G R+ +E+ + + G R GGG R P+ +RP T F + D
Sbjct: 61 C--GERVILEFPRRKVGYNEERSGGGFRGREPTFRRGGERQFSNRYSRPCSTRFRLVIDN 118
Query: 161 YHTR--TRDLERHFEPYGK--IISVRIRRNF--AFVQYEVQEDATRALDATNMSKLTDRV 214
TR +D++ H G S +RN A V + +D A++ +L R
Sbjct: 119 LSTRYSWQDIKDHIRKLGIEPTYSEAHKRNVNQALVCFSTHDDLRDAMNKLQGEELNGRK 178
Query: 215 ISVEYAVRD 223
+ RD
Sbjct: 179 LKCTDETRD 187
>gi|427777641|gb|JAA54272.1| Putative sf2 [Rhipicephalus pulchellus]
Length = 223
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 12/155 (7%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS----GFAFIYMDDERDAEDAIRGLDRTE 112
I+ GN D R D+E LF ++GK+ +D+K+ FAF+ DD RDAEDA++ D +
Sbjct: 10 IYVGNLPPDIRSKDIEDLFYKFGKITFIDLKNRRGPPFAFVEFDDPRDAEDAVQARDGYD 69
Query: 113 FGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHF 172
+ G RLRVE+ + R G R P R S+ +++ P +DL+ H
Sbjct: 70 Y--DGYRLRVEFPRGSAPGRGSMGPGRGRGPP--ARRSQYRVLVSGLPPSGSWQDLKDHM 125
Query: 173 EPYGKIISVRIRRN----FAFVQYEVQEDATRALD 203
G + + ++ F++YE + A + LD
Sbjct: 126 REAGDVCYADVFKDGTGVVEFLRYEDMKYAVKKLD 160
>gi|294461876|gb|ADE76495.1| unknown [Picea sitchensis]
Length = 149
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 65/106 (61%), Gaps = 10/106 (9%)
Query: 207 MSKLTDRVISVEYAVRDDDDRRNGH-SPDRNRDR----SPDRGRRRSPSPY---RRERGS 258
MSK+ DR I+VEYA R+D +RR G SP R R + DRGR RS SP R RGS
Sbjct: 1 MSKILDREITVEYAQREDGNRRGGRSSPIRGGGRYGRSAEDRGRDRSASPIYGRRAMRGS 60
Query: 259 PDYGRGSSRSPYRR-ERGSPDYGRVRSPSPYRRD-RGSPDYGRNSS 302
PDYGR S RR ER SPDYGR SP RR R SPDY R++S
Sbjct: 61 PDYGRAPSPIYSRRPERRSPDYGRAPSPIYSRRQGRRSPDYARDAS 106
>gi|443895761|dbj|GAC73106.1| polyadenylate-binding protein [Pseudozyma antarctica T-34]
Length = 556
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 84/186 (45%), Gaps = 23/186 (12%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLD 109
++C N + D + E+LF +YGK+ ++ GF F+ ++ +A+ A+ L
Sbjct: 228 VYCKNVDADVTDEEFEKLFTKYGKITSCVLQRDEDGKSKGFGFVNFENHDEAQTAVDELH 287
Query: 110 RTEFGRKGRRLRV----EWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRT 165
++F KG++L V + ++ E +RR +A+ L++ N +
Sbjct: 288 DSDF--KGQKLFVARAQKKSEREEELRR--SYEAAKNEKLAKFQGVNLYLKNIPESYDDE 343
Query: 166 RDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
R L F P+G I S +I R F FV Y E+A +A+ N L +R + V
Sbjct: 344 R-LRDEFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVA 402
Query: 219 YAVRDD 224
A R D
Sbjct: 403 LAQRKD 408
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 98/252 (38%), Gaps = 54/252 (21%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDAIRGL 108
++ G + ++ L +F G V D V +S G+A++ + D E A+ L
Sbjct: 48 LYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQL 107
Query: 109 DRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDL 168
+ + + R R+ W++ + +RR G G+ +F+ N D + L
Sbjct: 108 NYSLI--RNRPCRIMWSQRDPALRRTGQGN--------------IFIKNLDA-GIDNKAL 150
Query: 169 ERHFEPYGKIISVRIRRN------FAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 222
F +G I+S ++ + + FV YE E A A+ N L D+ + V +
Sbjct: 151 HDTFAAFGNILSCKVATSESGSLGYGFVHYETAEAADAAIKHVNGMLLNDKKVYVGH--- 207
Query: 223 DDDDRRNGHSPDRNRDRSPDRGRRRSPSPYRR-----------ERGSPDYGRGSSRSPYR 271
H P + R + R R + Y + E+ YG+ +S R
Sbjct: 208 --------HIPRKERQAKIEESRARFTNVYCKNVDADVTDEEFEKLFTKYGKITSCVLQR 259
Query: 272 RERG-SPDYGRV 282
E G S +G V
Sbjct: 260 DEDGKSKGFGFV 271
>gi|444723179|gb|ELW63840.1| Serine/arginine-rich splicing factor 9 [Tupaia chinensis]
Length = 235
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 80/160 (50%), Gaps = 11/160 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG-----FAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R+ DLE LF +YG++ +++K+ FAF+ +D RDAEDAI G +
Sbjct: 30 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNQHGLVPFAFVRFEDPRDAEDAIYGRNGY 89
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERH 171
++G+ RLRVE+ + G G P TR S +++ P +DL+ H
Sbjct: 90 DYGQC--RLRVEFPRTYGGRGGWPRGGRNGPP---TRRSDFRVLVSGLPPSGSWQDLKDH 144
Query: 172 FEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
G + ++++ V+Y +ED AL + +K
Sbjct: 145 MREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 184
>gi|255646543|gb|ACU23746.1| unknown [Glycine max]
Length = 310
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 7/74 (9%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R ++ GN D R+ ++E LF +YG + +D+K G+AF+ +D +DAEDAIRG D
Sbjct: 7 RTVYVGNLPGDIREREVEDLFLKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRD 66
Query: 110 RTEFGRKGRRLRVE 123
+F G RLRVE
Sbjct: 67 GYDF--DGHRLRVE 78
>gi|297843082|ref|XP_002889422.1| hypothetical protein ARALYDRAFT_311385 [Arabidopsis lyrata subsp.
lyrata]
gi|297335264|gb|EFH65681.1| hypothetical protein ARALYDRAFT_311385 [Arabidopsis lyrata subsp.
lyrata]
Length = 297
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 47/74 (63%), Gaps = 7/74 (9%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R ++ GN D R+ ++E LF +YG V ++D+K G+AF+ DD RDAEDAI+G D
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIQGRD 66
Query: 110 RTEFGRKGRRLRVE 123
+F G RLRVE
Sbjct: 67 GYDF--DGHRLRVE 78
>gi|255542756|ref|XP_002512441.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
gi|223548402|gb|EEF49893.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
Length = 300
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 97/214 (45%), Gaps = 25/214 (11%)
Query: 12 YLLIVYSHSVWPVQ--KKYLPRRLYVLGFRRSHSQLSIAAFEAMMRPIFCGNFEYDARQS 69
YLL++ V+ + + +L ++ +L +R S+ S R ++ GN D RQ
Sbjct: 7 YLLVIKRPPVYSSRRIQTFLKQKQCLLLGKRMSSRAS--------RTLYVGNLPGDIRQR 58
Query: 70 DLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 124
+++ LF +YG + VD+K G+AF+ +D RDAEDAIRG D F G RLRVE
Sbjct: 59 EVKDLFYKYGPIVEVDLKIPPRPPGYAFVEFEDARDAEDAIRGRDGYNF--DGCRLRVEL 116
Query: 125 TKHERGIRRPGGGSSARRPSTN----TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIIS 180
R PG S+ + +R S ++ P +DL+ H G +
Sbjct: 117 AHGGRRHSSPGDRYSSYSGRSGSRGPSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF 176
Query: 181 VRIRRN----FAFVQYEVQEDATRALDATNMSKL 210
++ R+ V Y +D A+ + S+
Sbjct: 177 SQVFRDRGGMTGIVDYTNYDDMKHAIKKLDDSEF 210
>gi|356572736|ref|XP_003554522.1| PREDICTED: pre-mRNA-splicing factor SF2-like [Glycine max]
Length = 309
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 7/74 (9%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R ++ GN D R+ ++E LF +YG + +D+K G+AF+ +D +DAEDAIRG D
Sbjct: 7 RTVYVGNLPGDIREREVEDLFLKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRD 66
Query: 110 RTEFGRKGRRLRVE 123
+F G RLRVE
Sbjct: 67 GYDF--DGHRLRVE 78
>gi|115452963|ref|NP_001050082.1| Os03g0344100 [Oryza sativa Japonica Group]
gi|113548553|dbj|BAF11996.1| Os03g0344100 [Oryza sativa Japonica Group]
Length = 264
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 78/173 (45%), Gaps = 23/173 (13%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG++ +D+K G+AF+ +D RDAE+A G D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAEEACAGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPST--------NTRPSKTLFVINFDPY 161
F G RLRVE RG GGSS RPS +R S+ ++ P
Sbjct: 67 GYNF--DGHRLRVEPAHGGRG----NGGSSFDRPSNFGGGGRRGVSRHSEYRVLVTGLPS 120
Query: 162 HTRTRDLERHFEPYGKIISVRIRR----NFAFVQYEVQEDATRALDATNMSKL 210
+DL+ H G + + R V Y +D A+ + S+
Sbjct: 121 SASWQDLKDHMRKAGDVCFSEVYREGGGTVGIVDYTNYDDMKYAIKKLDDSEF 173
>gi|38566951|emb|CAE76253.1| related to heterogeneous nuclear ribonucleoprotein HRP1 [Neurospora
crassa]
Length = 344
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 105/264 (39%), Gaps = 41/264 (15%)
Query: 58 FCGNFEYDARQSDLERLFRRYGKVDRV-------DMKSGFAFIYMDDERDAEDAIRGLDR 110
F N +DA + L+ F ++G V V + G+ F+ E+A +D
Sbjct: 91 FVRNIVFDATEEHLKGAFEKFGNVTDVFLARDPRGLSKGYGFVTFATREALEEACSQVDG 150
Query: 111 TEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLER 170
+ + GRR+ VE + + R S PS LF+ N PY T +L
Sbjct: 151 SFW--HGRRISVEPRR-----------AKVNRGSAVGEPSACLFIGNI-PYETTDAELNN 196
Query: 171 HFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV- 221
F + VR+ R FA + E A AL+ ++L +R I ++YA
Sbjct: 197 IFVGIDGLKDVRVAVDRATGWPRGFAHADFVDVEAAVNALEKLQGTQLGERTIKIDYAQP 256
Query: 222 ------RDDDDRRNGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERG 275
R+++ R + P + RD G+R Y R+ G+ Y R Y R+ G
Sbjct: 257 AAARQPRENNGERREYRPRQQRD-----GQRDGQRSYNRDGGNRSYNREGGNRNYNRDGG 311
Query: 276 SPDYGRVRSPSPYRRDRGSPDYGR 299
+ Y R Y R+ G +Y R
Sbjct: 312 NRSYNREGGDRSYNREGGDRNYNR 335
>gi|348514746|ref|XP_003444901.1| PREDICTED: hypothetical protein LOC100690823 [Oreochromis
niloticus]
Length = 396
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 26/180 (14%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y R+ D++R F YGK+ +D+K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 4 VYIGRLSYHVREKDIQRFFSGYGKLMEIDLKNGYGFVEFEDNRDADDAVYELNGKELC-- 61
Query: 117 GRRLRVEWTKHERGIRRP-------------GGGSSARRPSTNTR---PSKTLFVINFDP 160
G R+ VE H RG RR G S+R S + P +T + + +
Sbjct: 62 GERVIVE---HARGPRRDRDGYGGGYWGGGRSNGYSSRSRSGRDKYGPPVRTEYRLIVEN 118
Query: 161 YHTRT--RDLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
+R +DL+ G++ + + R N +++ D RALD + + + R I
Sbjct: 119 LSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRTYSDMKRALDKLDGTDINGRKI 178
>gi|224132592|ref|XP_002321360.1| predicted protein [Populus trichocarpa]
gi|222868356|gb|EEF05487.1| predicted protein [Populus trichocarpa]
Length = 240
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+S++E LF +YG++ V++K + F+ ++ RDAEDAIRG D
Sbjct: 7 RTIYVGNLPADIRESEIEDLFYKYGRILDVELKIPPRPPCYCFVEFENARDAEDAIRGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERG------IRRPGGGSSARRPSTNTRPSKTLFVINFDPYHT 163
F G RLRVE RG GGG + +R S+ ++ P
Sbjct: 67 GYNF--DGCRLRVELAHGGRGPSSNDRRGGYGGGGGSGGRFGISRHSEFRVIVRGLPSSA 124
Query: 164 RTRDLERHFEPYGKIISVRIRRN----FAFVQYEVQED---ATRALDATNM 207
+DL+ H G + + R+ F V Y ED A R LD T
Sbjct: 125 SWQDLKDHMRKAGDVCFAEVSRDSDGTFGVVDYTNHEDMKYAIRKLDDTEF 175
>gi|325303176|tpg|DAA34416.1| TPA_inf: alternative splicing factor ASF/SF2 [Amblyomma variegatum]
Length = 222
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 12/155 (7%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS----GFAFIYMDDERDAEDAIRGLDRTE 112
I+ GN D R D+E LF ++GK+ +D+K+ FAF+ DD RDAEDA+ D +
Sbjct: 10 IYVGNLPPDIRSKDIEDLFYKFGKITFIDLKNRRGPPFAFVEFDDPRDAEDAVHARDGYD 69
Query: 113 FGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHF 172
+ G RLRVE+ + R G R P R S+ +++ P +DL+ H
Sbjct: 70 Y--DGYRLRVEFPRGSAPGRGSMGPGRGRGPP--ARRSQYRVLVSGLPPSGSWQDLKDHM 125
Query: 173 EPYGKIISVRIRRN----FAFVQYEVQEDATRALD 203
G + + ++ F++YE + A + LD
Sbjct: 126 REAGDVCYADVFKDGTGVVEFLRYEDMKYAVKKLD 160
>gi|346471975|gb|AEO35832.1| hypothetical protein [Amblyomma maculatum]
Length = 223
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 12/155 (7%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS----GFAFIYMDDERDAEDAIRGLDRTE 112
I+ GN D R D+E LF ++GK+ +D+K+ FAF+ DD RDAEDA+ D +
Sbjct: 10 IYVGNLPPDIRSKDIEDLFYKFGKITFIDLKNRRGPPFAFVEFDDPRDAEDAVHARDGYD 69
Query: 113 FGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHF 172
+ G RLRVE+ + R G R P R S+ +++ P +DL+ H
Sbjct: 70 Y--DGYRLRVEFPRGSAPGRGSMGPGRGRGPP--ARRSQYRVLVSGLPPSGSWQDLKDHM 125
Query: 173 EPYGKIISVRIRRN----FAFVQYEVQEDATRALD 203
G + + ++ F++YE + A + LD
Sbjct: 126 REAGDVCYADVFKDGTGVVEFLRYEDMKYAVKKLD 160
>gi|302795628|ref|XP_002979577.1| hypothetical protein SELMODRAFT_36388 [Selaginella moellendorffii]
gi|300152825|gb|EFJ19466.1| hypothetical protein SELMODRAFT_36388 [Selaginella moellendorffii]
Length = 236
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 76/166 (45%), Gaps = 15/166 (9%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ +++ LF +YG + +D+K G+ FI +D RDAEDAIRG D
Sbjct: 4 RTIYVGNLPGDVREREIDDLFHKYGPIVDIDLKLPPRPPGYCFIEFEDVRDAEDAIRGRD 63
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSS-ARRPSTNTRPSKTLFVINFDPYHTRTRDL 168
F G RLRVE RG SS R + +R S+ +I P +DL
Sbjct: 64 GYNF--DGYRLRVEIAHGGRGPPSSDRYSSYGGRGGSVSRRSEYRVIITGLPSSASWQDL 121
Query: 169 ERHFEPYGKIISVRIRRN-------FAFVQYEVQEDATRALDATNM 207
+ H G + ++ R F Y+ + A + LD +
Sbjct: 122 KDHMRRAGDVCFAQVFREGNGTTGIVDFTNYDDMKYAIKKLDDSEF 167
>gi|17535713|ref|NP_496441.1| Protein RSP-2 [Caenorhabditis elegans]
gi|56749459|sp|Q23120.1|RSP2_CAEEL RecName: Full=Probable splicing factor, arginine/serine-rich 2;
AltName: Full=CeSRp40; AltName: Full=RNA-binding protein
srp-4
gi|3880428|emb|CAA91394.1| Protein RSP-2 [Caenorhabditis elegans]
Length = 281
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 81/189 (42%), Gaps = 21/189 (11%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M ++ G A D+E FR YGK+ V MK+GF F+ D+RDA+DA+ L+ E
Sbjct: 1 MVRVYIGRLPNRASDRDVEHFFRGYGKLSDVIMKNGFGFVDFQDQRDADDAVHDLNGKEL 60
Query: 114 GRKGRRLRVEWTKHERGI--RRPGGGSSARRPSTN-----------TRPSKTLFVINFDP 160
G R+ +E+ + + G R G G R P+ +RP T F + D
Sbjct: 61 C--GERVILEFPRRKVGYNEERSGSGFRGREPTFRKGGERQFSNRYSRPCSTRFRLVIDN 118
Query: 161 YHTR--TRDLERHFEPYGK--IISVRIRRNF--AFVQYEVQEDATRALDATNMSKLTDRV 214
TR +D++ H G S +RN A V + +D A++ L R
Sbjct: 119 LSTRYSWQDIKDHIRKLGIEPTYSEAHKRNVNQAIVCFTSHDDLRDAMNKLQGEDLNGRK 178
Query: 215 ISVEYAVRD 223
+ RD
Sbjct: 179 LKCTDETRD 187
>gi|357121520|ref|XP_003562467.1| PREDICTED: pre-mRNA-splicing factor SF2-like [Brachypodium
distachyon]
Length = 288
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 87/198 (43%), Gaps = 44/198 (22%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG++ +D+K GFAF+ +D RDAEDAI G D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRDAEDAIHGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPST-------------NTRPSKTLFVI 156
F G RLRVE + G +S+ P++ +R ++ ++
Sbjct: 67 GYNF--DGNRLRVE-------LAHGGRANSSSLPNSYGGGGGGGGRRGGVSRHTEYRVLV 117
Query: 157 NFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVIS 216
P +DL+ H G + + Y + T +D TN +
Sbjct: 118 TGLPSSASWQDLKDHMRKAGDVCFSEV--------YREGDGTTGIVDYTNYDDM------ 163
Query: 217 VEYAVR--DDDDRRNGHS 232
+YA+R DD + RN S
Sbjct: 164 -KYAIRKLDDSEFRNAFS 180
>gi|403412122|emb|CCL98822.1| predicted protein [Fibroporia radiculosa]
Length = 537
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 87/180 (48%), Gaps = 26/180 (14%)
Query: 57 IFCGNFEYDARQSDLERLFRRYG------KVDRVDMKSGFAFIYMDDERDAEDAIRGLDR 110
+F GN A +L ++F R+G KV GFA + + + A+ + R
Sbjct: 107 LFLGNLSPWATVGELRKIFSRFGEPVIILKVTSAGQSRGFAHLQFPNVQYAKKVLDFHKR 166
Query: 111 TEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNT-RPSKTLFVINFDPYHTRTRDLE 169
F GR+LR+ ++ S AR PS+N R S++L+V N PY+T+ +L+
Sbjct: 167 YPFMTGGRQLRIVFST---------STSRAREPSSNIARASRSLYVGNV-PYNTKEEELQ 216
Query: 170 RHFEPYGKIISVRIRRN-------FAFVQYEVQEDATRALDA--TNMSKLTDRVISVEYA 220
+ F YG ++ V + R+ +A V +E+ ED LDA T +L R + ++Y+
Sbjct: 217 KLFATYGAVVRVNLTRDEENNRCLYAHVDFELLEDTRAILDAQWTKRFELQGRPLWIDYS 276
>gi|326495758|dbj|BAJ85975.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 255
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 75/167 (44%), Gaps = 19/167 (11%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R+ ++E LF +YG++ +D+K G+AF+ +D RDA+DAI G D
Sbjct: 9 IYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGY 68
Query: 112 EFGRKGRRLRVEWTKHERG----IRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRD 167
+F G RLRVE + RP SS RR + R + V P +D
Sbjct: 69 DF--DGYRLRVELAHGGKAQSYSYDRPSSFSSGRRGGVSRRSEYRVMVDGL-PSSASWQD 125
Query: 168 LERHFEPYGKIISVRIRR----NFAFVQYEVQED---ATRALDATNM 207
L+ H G + + R V Y +D A R LD T
Sbjct: 126 LKDHMRRAGDVCFSDVYREAGATVGIVDYTNYDDMKYAIRKLDGTEF 172
>gi|224285040|gb|ACN40249.1| unknown [Picea sitchensis]
Length = 398
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 7/72 (9%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R+S++E LF +YG++ +D+K G+ FI D+ RDAEDAIRG D
Sbjct: 8 IYVGNLPGDIRESEIEDLFYKYGRIIDIDLKLPPRPPGYCFIEFDNARDAEDAIRGRDGY 67
Query: 112 EFGRKGRRLRVE 123
+F G RLRVE
Sbjct: 68 KF--DGHRLRVE 77
>gi|225706140|gb|ACO08916.1| Splicing factor, arginine/serine-rich 4 [Osmerus mordax]
Length = 101
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 7/102 (6%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M ++ G Y AR+ D+E+ F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 1 MSRVYIGRLSYRAREKDVEKFFKGYGKILEVDLKNGYGFVEFDDPRDADDAVYDLNGKDL 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFV 155
G R+ VE H +G RR G S R + + LF+
Sbjct: 61 --CGERVIVE---HTKGPRRDGSYGSGGRSKYSIKC--CLFI 95
Score = 41.6 bits (96), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 161 YHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
Y R +D+E+ F+ YGKI+ V ++ + FV+++ DA A+ N L + VE+
Sbjct: 11 YRAREKDVEKFFKGYGKILEVDLKNGYGFVEFDDPRDADDAVYDLNGKDLCGERVIVEHT 70
>gi|403343651|gb|EJY71156.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 491
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 20/166 (12%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS------GFAFIYMDDERDAEDAIRGL 108
+ +F GN + + L + F YG V V + GFAF+ ++A+ A+
Sbjct: 240 KELFVGNLSFHTTEDSLGQAFGEYGTVTNVKLPQQDGRPKGFAFVEFATHKEAQAALDAY 299
Query: 109 DRTEFGRKGRRLRVEWTKHERGIRRPGGGSSAR----RPSTNTRPSKTLFVINFDPYHTR 164
+ +F +GR LR+ ++ + GG+ PS S TLFV N + T
Sbjct: 300 NGQDF--EGRALRINFSGGKPAGAGGPGGNQGGFQRGAPSGGDGQSTTLFVGNIS-FQTT 356
Query: 165 TRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALD 203
LERHF G I +VR+ + FA V++E E A +AL+
Sbjct: 357 QDSLERHFSKCGPIKAVRVAMGDDGRVKGFAHVEFESPESAQKALE 402
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 143 PSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR------RNFAFVQYEVQE 196
P+ K LFV N +HT L + F YG + +V++ + FAFV++ +
Sbjct: 232 PANEDDDKKELFVGNLS-FHTTEDSLGQAFGEYGTVTNVKLPQQDGRPKGFAFVEFATHK 290
Query: 197 DATRALDATNMSKLTDRVISVEYA 220
+A ALDA N R + + ++
Sbjct: 291 EAQAALDAYNGQDFEGRALRINFS 314
>gi|302791860|ref|XP_002977696.1| hypothetical protein SELMODRAFT_107678 [Selaginella moellendorffii]
gi|300154399|gb|EFJ21034.1| hypothetical protein SELMODRAFT_107678 [Selaginella moellendorffii]
Length = 298
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 75/162 (46%), Gaps = 15/162 (9%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ +++ LF +YG + +D+K G+ FI +D RDAEDAIRG D
Sbjct: 6 RTIYVGNLPGDVREREIDDLFHKYGPIVDIDLKLPPRPPGYCFIEFEDVRDAEDAIRGRD 65
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSS-ARRPSTNTRPSKTLFVINFDPYHTRTRDL 168
F G RLRVE RG SS R + +R S+ +I P +DL
Sbjct: 66 GYNF--DGYRLRVEIAHGGRGPPSSDRYSSYGGRGGSVSRRSEYRVIITGLPSSASWQDL 123
Query: 169 ERHFEPYGKIISVRIRRN-------FAFVQYEVQEDATRALD 203
+ H G + ++ R F Y+ + A + LD
Sbjct: 124 KDHMRRAGDVCFAQVFREGNGTTGIVDFTNYDDMKYAIKKLD 165
>gi|357516357|ref|XP_003628467.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
gi|355522489|gb|AET02943.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
Length = 347
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 82/264 (31%), Positives = 115/264 (43%), Gaps = 38/264 (14%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R ++ GN D R+ ++E LF +YG + +D+K G+AF+ +D +DAEDAIRG D
Sbjct: 33 RTVYVGNLPGDIREREVEDLFMKYGHITHIDLKVPPRPPGYAFVEFEDVQDAEDAIRGRD 92
Query: 110 RTEFGRKGRRLRVEWTKHERGIR----RPGGGSSARRPSTNTRPSKTLFVINFDPYHTRT 165
+F G RLRVE RG R S+ R +R S+ ++N P
Sbjct: 93 GYDF--DGHRLRVEAAHGGRGNSSSRDRYSSHSNGRGGRGVSRRSEYRVIVNGLPSSASW 150
Query: 166 RDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR--D 223
+DL+ H G + ++ + T +D TN + +YA++ D
Sbjct: 151 QDLKDHMRKAGDVCFSQV--------FHDGRGTTGIVDYTNYDDM-------KYAIKKLD 195
Query: 224 DDDRRNGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVR 283
D + RN S R R D RR S SP R S SRS R S G R
Sbjct: 196 DSEFRNAFSKSYVRVREYD-SRRDSRSPGRGPSHSRGRSYSRSRSRSRSHSRSYSPGHSR 254
Query: 284 SPSPYRRDRGSPDYGRNSSRSPYK 307
S SP G++S RSP K
Sbjct: 255 SKSPK---------GKSSQRSPAK 269
>gi|71996546|ref|NP_495308.3| Protein RSP-5, isoform d [Caenorhabditis elegans]
gi|351064338|emb|CCD72700.1| Protein RSP-5, isoform d [Caenorhabditis elegans]
Length = 208
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 41/70 (58%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y+AR+ D+ER + YGK++ + MK GFAF+ +D RDAEDA LD
Sbjct: 4 LYLGKIPYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTMEGS 63
Query: 117 GRRLRVEWTK 126
RL VE +
Sbjct: 64 SMRLVVEMAR 73
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 160 PYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQ---EDATRALDATNMSKLTDRVIS 216
PY+ R RD+ER + YGKI ++ ++ FAFV +E EDA LD M + R++
Sbjct: 10 PYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLV- 68
Query: 217 VEYA 220
VE A
Sbjct: 69 VEMA 72
>gi|449436495|ref|XP_004136028.1| PREDICTED: pre-mRNA-splicing factor SF2-like [Cucumis sativus]
gi|449498497|ref|XP_004160553.1| PREDICTED: pre-mRNA-splicing factor SF2-like [Cucumis sativus]
Length = 309
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R ++ GN D R+ ++E LF +YG++ +D+K G+AF+ +D DA+DAIRG D
Sbjct: 7 RTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQDAIRGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERG 130
+F G RLRVE RG
Sbjct: 67 GYDF--DGHRLRVELAHGGRG 85
>gi|168000741|ref|XP_001753074.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695773|gb|EDQ82115.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 279
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG++ +D+K G+ FI +D RDAEDAIRG D
Sbjct: 7 RTIYVGNLPGDVREREIEDLFYKYGRIVDIDLKLPPRPPGYCFIEFEDARDAEDAIRGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERG 130
F G RLRVE RG
Sbjct: 67 GYNF--DGNRLRVEIAHGGRG 85
>gi|5815238|gb|AAD52612.1| splicing factor SR1D [Arabidopsis thaliana]
Length = 261
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 46/76 (60%), Gaps = 7/76 (9%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R ++ GN D R+ ++E LF +YG V ++D+K G+AF+ DD RDAEDAI G D
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRD 66
Query: 110 RTEFGRKGRRLRVEWT 125
+F G RLRVE
Sbjct: 67 GYDF--DGHRLRVELA 80
>gi|357516355|ref|XP_003628466.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
gi|355522488|gb|AET02942.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
Length = 329
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 82/264 (31%), Positives = 115/264 (43%), Gaps = 38/264 (14%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R ++ GN D R+ ++E LF +YG + +D+K G+AF+ +D +DAEDAIRG D
Sbjct: 33 RTVYVGNLPGDIREREVEDLFMKYGHITHIDLKVPPRPPGYAFVEFEDVQDAEDAIRGRD 92
Query: 110 RTEFGRKGRRLRVEWTKHERGIR----RPGGGSSARRPSTNTRPSKTLFVINFDPYHTRT 165
+F G RLRVE RG R S+ R +R S+ ++N P
Sbjct: 93 GYDF--DGHRLRVEAAHGGRGNSSSRDRYSSHSNGRGGRGVSRRSEYRVIVNGLPSSASW 150
Query: 166 RDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR--D 223
+DL+ H G + ++ + T +D TN + +YA++ D
Sbjct: 151 QDLKDHMRKAGDVCFSQV--------FHDGRGTTGIVDYTNYDDM-------KYAIKKLD 195
Query: 224 DDDRRNGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVR 283
D + RN S R R D RR S SP R S SRS R S G R
Sbjct: 196 DSEFRNAFSKSYVRVREYD-SRRDSRSPGRGPSHSRGRSYSRSRSRSRSHSRSYSPGHSR 254
Query: 284 SPSPYRRDRGSPDYGRNSSRSPYK 307
S SP G++S RSP K
Sbjct: 255 SKSPK---------GKSSQRSPAK 269
>gi|426247382|ref|XP_004017465.1| PREDICTED: serine/arginine-rich splicing factor 9 isoform 1 [Ovis
aries]
Length = 226
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 81/160 (50%), Gaps = 11/160 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R+ DLE LF +YG++ +++K+ FAF+ +D RDAEDAI G +
Sbjct: 16 IYVGNLPSDVREKDLEDLFYKYGRISEIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERH 171
++G+ RLRVE+ + G G + P TR S +++ P +DL+ H
Sbjct: 76 DYGQC--RLRVEFPRTYGGRGGWPRGGRSGPP---TRRSDFRVLVSGLPPSGSWQDLKDH 130
Query: 172 FEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
G + ++++ V+Y +ED AL + +K
Sbjct: 131 MREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDETKF 170
>gi|134085783|ref|NP_001076867.1| serine/arginine-rich splicing factor 9 [Bos taurus]
gi|358421698|ref|XP_003585083.1| PREDICTED: serine/arginine-rich splicing factor 9-like [Bos taurus]
gi|133777441|gb|AAI14700.1| SFRS9 protein [Bos taurus]
gi|296478484|tpg|DAA20599.1| TPA: splicing factor, arginine/serine-rich 9 [Bos taurus]
Length = 221
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 81/160 (50%), Gaps = 11/160 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R+ DLE LF +YG++ +++K+ FAF+ +D RDAEDAI G +
Sbjct: 16 IYVGNLPSDVREKDLEDLFYKYGRISEIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERH 171
++G+ RLRVE+ + G G + P TR S +++ P +DL+ H
Sbjct: 76 DYGQC--RLRVEFPRTYGGRGGWPRGGRSGPP---TRRSDFRVLVSGLPPSGSWQDLKDH 130
Query: 172 FEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
G + ++++ V+Y +ED AL + +K
Sbjct: 131 MREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDETKF 170
>gi|308502850|ref|XP_003113609.1| CRE-RSP-5 protein [Caenorhabditis remanei]
gi|308263568|gb|EFP07521.1| CRE-RSP-5 protein [Caenorhabditis remanei]
Length = 215
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 40/70 (57%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
I+ G Y+AR+ D+ER + YG++ + MK GFAF+ +D RDAEDA LD
Sbjct: 4 IYLGKIPYNARERDIERFLKGYGRITNISMKYGFAFVDFEDHRDAEDACHDLDGKTMDGG 63
Query: 117 GRRLRVEWTK 126
R+ VE +
Sbjct: 64 SMRVVVEMAR 73
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 160 PYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQ---EDATRALDATNMSKLTDRVIS 216
PY+ R RD+ER + YG+I ++ ++ FAFV +E EDA LD M + RV+
Sbjct: 10 PYNARERDIERFLKGYGRITNISMKYGFAFVDFEDHRDAEDACHDLDGKTMDGGSMRVV- 68
Query: 217 VEYA 220
VE A
Sbjct: 69 VEMA 72
>gi|50979202|ref|NP_001003352.1| neurofilament heavy polypeptide [Canis lupus familiaris]
gi|24020878|gb|AAN40837.1|AF346625_1 heavy neurofilament protein [Canis lupus familiaris]
Length = 1135
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 96/220 (43%), Gaps = 40/220 (18%)
Query: 229 NGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSP--- 285
SP++ +SP++ + SP + E SP ++SP + E SP V+SP
Sbjct: 499 EAASPEKEEAKSPEKAK----SPMKEEAKSP----AEAKSPVKEEAKSP--AEVKSPEKA 548
Query: 286 -SPYRRDRGSPDYGRN--SSRSPYKKERAAIGHGRGP--SRSPYRRDRGSPENG------ 334
SP + + SP ++ ++SP K+E + + P ++SP + + SPE
Sbjct: 549 KSPMKEEAKSPTEVKSPEKAKSPAKEEAKSPVEAKSPEKAKSPVKEEAKSPEKAKSPVKE 608
Query: 335 HGSSP----SPYRKGKPSPNNGRGP--SRSPYERERPSPENGRG----------GSRSPY 378
SP SP ++ SP + P ++SP + E SPE + ++SP
Sbjct: 609 EAKSPEKAKSPVKEEAKSPEKAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPV 668
Query: 379 RRERPSPDNGRVPSPNSMPEPRDSPGYDGADSPINERYRS 418
+ E SP+ + P P + + A SP+ E +S
Sbjct: 669 KEEAKSPEKTKSPVKEEAKSPEKAKSPEKAKSPVKEEAKS 708
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 84/192 (43%), Gaps = 30/192 (15%)
Query: 229 NGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSPY 288
SP + +SP++ + SP + E SP+ + SP + E SP+ + SP
Sbjct: 711 KAKSPVKEEAKSPEKAK----SPVKEEAKSPEKAK----SPVKEEAKSPEKAK----SPV 758
Query: 289 RRDRGSPDYGRNSSRSPYKKERAAIGHGRGP--SRSPYRRDRGSPENGHGSSPSPYRKGK 346
+ + SP+ +SP K+E + + P ++SP + + SPE SP ++
Sbjct: 759 KEEAKSPEK----PKSPVKEEAKSPEKAKSPEKAKSPVKEEAKSPEKAK----SPVKEEA 810
Query: 347 PSPNNGRGPSRSPYERERPSPENGRGGSRSPYRRERPSPDNGRVPSPNSMPEPRDSPGYD 406
SP +SP + E SPE +SP + E SP+ + P P + +
Sbjct: 811 KSPEKA----KSPVKEEAKSPEKA----KSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPE 862
Query: 407 GADSPINERYRS 418
A SP+ E +S
Sbjct: 863 KAKSPVKEEAKS 874
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 91/204 (44%), Gaps = 40/204 (19%)
Query: 229 NGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRG--SSRSPYRRERGSPDYGRVRSPS 286
SP + +SP++ + SP + E SP+ + ++SP + E SP+ + S
Sbjct: 663 KAKSPVKEEAKSPEKTK----SPVKEEAKSPEKAKSPEKAKSPVKEEAKSPEKAK----S 714
Query: 287 PYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGP----------SRSPYRRDRGSPENGHG 336
P + + SP+ + SP K+E + + P ++SP + + SPE
Sbjct: 715 PVKEEAKSPEKAK----SPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKPK- 769
Query: 337 SSPSPYRKGKPSPNNGRGP--SRSPYERERPSPENGRGGSRSPYRRERPSPDNGRVPSPN 394
SP ++ SP + P ++SP + E SPE +SP + E SP+ + P
Sbjct: 770 ---SPVKEEAKSPEKAKSPEKAKSPVKEEAKSPEKA----KSPVKEEAKSPEKAKSP--- 819
Query: 395 SMPEPRDSPGYDGADSPINERYRS 418
+ E SP + A SP+ E +S
Sbjct: 820 -VKEEAKSP--EKAKSPVKEEAKS 840
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 93/205 (45%), Gaps = 39/205 (19%)
Query: 229 NGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRG--SSRSPYRRERGSPDYGRVRSPS 286
SP + +SP++ + SP + E SP+ + ++SP + E SP+ + S
Sbjct: 753 KAKSPVKEEAKSPEKPK----SPVKEEAKSPEKAKSPEKAKSPVKEEAKSPEKAK----S 804
Query: 287 PYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGP--SRSPYRRDRGSPENGHGSSPSPYRK 344
P + + SP+ + SP K+E + P ++SP + + SPE SP ++
Sbjct: 805 PVKEEAKSPEKAK----SPVKEE------AKSPEKAKSPVKEEAKSPEKAK----SPVKE 850
Query: 345 GKPSPNNGRGP--SRSPYERERPSPENGRG--GSRSPYRRERPSPDNGRVP----SP--- 393
SP + P ++SP + E SPE + ++SP + E SP+ + P SP
Sbjct: 851 EAKSPEKAKSPEKAKSPVKEEAKSPEKAKSPEKAKSPVKEEAKSPEKAKSPEKVKSPVKE 910
Query: 394 -NSMPEPRDSPGYDGADSPINERYR 417
PE ++ + A SPI E +
Sbjct: 911 ETKAPE-KEVTKKEEAKSPIKEEEK 934
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 92/210 (43%), Gaps = 32/210 (15%)
Query: 229 NGHSPDRNRDRSPDRGR--RRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSPS 286
SP + +SP + ++ SP + E SP+ + SP + E SP+ + S
Sbjct: 567 KAKSPAKEEAKSPVEAKSPEKAKSPVKEEAKSPEKAK----SPVKEEAKSPEKAK----S 618
Query: 287 PYRRDRGSPDYGRN--SSRSPYKKERAAIGHGRGP----------SRSPYRRDRGSPENG 334
P + + SP+ ++ ++SP K+E + + P ++SP + + SPE
Sbjct: 619 PVKEEAKSPEKAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKT 678
Query: 335 HGSSPSPYRKGKPSPNNGRGP--SRSPYERERPSPENGRG----GSRSPYRRERPSPDNG 388
SP ++ SP + P ++SP + E SPE + ++SP + + P +
Sbjct: 679 K----SPVKEEAKSPEKAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEA 734
Query: 389 RVPSPNSMPEPRDSPGYDGADSPINERYRS 418
+ P P ++ + A SP+ E +S
Sbjct: 735 KSPEKAKSPVKEEAKSPEKAKSPVKEEAKS 764
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 88/204 (43%), Gaps = 40/204 (19%)
Query: 229 NGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRG--SSRSPYRRERGSPDYGRVRSPS 286
SP + +SP++ + SP + E SP+ + ++SP + E SP+ + S
Sbjct: 601 KAKSPVKEEAKSPEKAK----SPVKEEAKSPEKAKSPEKAKSPVKEEAKSPEKAK----S 652
Query: 287 PYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGP--SRSPYRRDRGSPENGHGSSPSPYRK 344
P + + SP+ + SP K+E + P ++SP + + SPE SP +
Sbjct: 653 PVKEEAKSPEKAK----SPVKEE------AKSPEKTKSPVKEEAKSPEKAK----SPEKA 698
Query: 345 GKPSPNNGRGP--SRSPYERERPSPENGRGGSRSPYRRERPSPDNGRVPSPNSM--PEPR 400
P + P ++SP + E SPE + SP + E SP+ + P PE
Sbjct: 699 KSPVKEEAKSPEKAKSPVKEEAKSPEKAK----SPVKEEAKSPEKAKSPVKEEAKSPEKA 754
Query: 401 DSPGYDGADSP------INERYRS 418
SP + A SP + E +S
Sbjct: 755 KSPVKEEAKSPEKPKSPVKEEAKS 778
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 18/161 (11%)
Query: 268 SPYRRERGSPDYGRVRSP----SPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGP--SR 321
SP E SP+ +SP SP + + SP ++SP K+E + + P ++
Sbjct: 494 SPPAEEAASPEKEEAKSPEKAKSPMKEEAKSP----AEAKSPVKEEAKSPAEVKSPEKAK 549
Query: 322 SPYRRDRGSPENGHG--SSPSPYRKGKPSPNNGRGP--SRSPYERERPSPENGRGGSRSP 377
SP + + SP + SP ++ SP + P ++SP + E SPE +SP
Sbjct: 550 SPMKEEAKSPTEVKSPEKAKSPAKEEAKSPVEAKSPEKAKSPVKEEAKSPEKA----KSP 605
Query: 378 YRRERPSPDNGRVPSPNSMPEPRDSPGYDGADSPINERYRS 418
+ E SP+ + P P + + A SP+ E +S
Sbjct: 606 VKEEAKSPEKAKSPVKEEAKSPEKAKSPEKAKSPVKEEAKS 646
>gi|328874817|gb|EGG23182.1| hypothetical protein DFA_05314 [Dictyostelium fasciculatum]
Length = 527
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 95/211 (45%), Gaps = 49/211 (23%)
Query: 57 IFCGNFEYDARQSDLERLFRRY---GKVDRVDMKSGFAFIYMDDERDAED-AIRGLDRTE 112
+F GN D +++ L Y VD++D+KSG+AF+ + D I G+ RT
Sbjct: 181 LFIGNLPLDIGVAEVVNLCSPYCGRSSVDKIDVKSGYAFVIIKSNYSTCDRLIAGIHRTI 240
Query: 113 FGRKGRRLRVEWTKHE-RG-----------------------------------IRRPGG 136
+ + + L V+++K E RG
Sbjct: 241 Y--RNKSLTVQYSKSEGRGGSTRDRDGRGDRDRGGRDRDRDRDRGGRDRDRDRDRGGDRD 298
Query: 137 GSSARRPSTN----TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQY 192
S+A ST +PS +LF++NF ++ +E +P+G+I + +R+NF FV++
Sbjct: 299 RSTASTTSTKQNGAMKPSTSLFLVNFGSKTNQSL-IETWCKPFGRINRIDMRKNFCFVEF 357
Query: 193 EVQEDATRALDATNMSKLTD--RVISVEYAV 221
+ E +T+A++A + + ++VE+A+
Sbjct: 358 DNIEQSTKAMEALHGKDVASDGNKLTVEFAI 388
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 52 AMMRP---IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGL 108
M+P +F NF QS +E + +G+++R+DM+ F F+ D+ + A+ L
Sbjct: 311 GAMKPSTSLFLVNFGSKTNQSLIETWCKPFGRINRIDMRKNFCFVEFDNIEQSTKAMEAL 370
Query: 109 DRTEFGRKGRRLRVEW 124
+ G +L VE+
Sbjct: 371 HGKDVASDGNKLTVEF 386
>gi|395833916|ref|XP_003789963.1| PREDICTED: serine/arginine-rich splicing factor 9 isoform 1
[Otolemur garnettii]
gi|395833918|ref|XP_003789964.1| PREDICTED: serine/arginine-rich splicing factor 9 isoform 2
[Otolemur garnettii]
Length = 221
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 11/160 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R+ DLE LF +YG++ +++K+ FAF+ +D RDAEDAI G +
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERH 171
++G+ RLRVE+ R GG R TR S +++ P +DL+ H
Sbjct: 76 DYGQC--RLRVEFP---RTYGGQGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDH 130
Query: 172 FEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
G + ++++ V+Y +ED AL + +K
Sbjct: 131 MREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 170
>gi|297260821|ref|XP_001109476.2| PREDICTED: hypothetical protein LOC717705 [Macaca mulatta]
Length = 940
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 94/211 (44%), Gaps = 31/211 (14%)
Query: 229 NGHSPDRNRDRSPDRGR--RRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSP- 285
SP++ +SP + ++ SP + E SP ++SP + E SP V+SP
Sbjct: 446 EAKSPEKEEAKSPAEVKSPEKAKSPAKEEAKSP----AEAKSPEKEEAKSP--AEVKSPE 499
Query: 286 ---SPYRRDRGSPDYGRN--SSRSPYKKERAAIGHGRGP--SRSPYRRDRGSPENG---- 334
SP + + SP ++ ++SP K+E + + P ++SP + + SPE
Sbjct: 500 KAKSPAKEEAKSPAEAKSPEKAKSPVKEEAKSPAEAKSPEKAKSPTKEEAKSPEKAKSPE 559
Query: 335 -HGSSP----SPYRKGKPSPNNGRGP--SRSPYERERPSPENGRGGSRSPYRRERPSPDN 387
SP SP ++ SP + P ++SP + E SPE + SP + E SP+
Sbjct: 560 KEAKSPEKAKSPVKEEAKSPEKAKSPEKAKSPVKEEAKSPEKAK----SPVKEEAKSPEK 615
Query: 388 GRVPSPNSMPEPRDSPGYDGADSPINERYRS 418
+ P P + + A SP+ E +S
Sbjct: 616 AKSPVKEEAKSPEKAKSPEKAKSPVKEEAKS 646
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 88/199 (44%), Gaps = 25/199 (12%)
Query: 228 RNGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRG--SSRSPYRRERGSPDYGRVRSP 285
+ SP + +SP + SP + E SP + ++SP + E SP +
Sbjct: 431 KEAKSPVKEEAKSPAEAK----SPEKEEAKSPAEVKSPEKAKSPAKEEAKSPAEAK---- 482
Query: 286 SPYRRDRGSPDYGRN--SSRSPYKKERAAIGHGRGP--SRSPYRRDRGSPENGHGSSPSP 341
SP + + SP ++ ++SP K+E + + P ++SP + + SP SP
Sbjct: 483 SPEKEEAKSPAEVKSPEKAKSPAKEEAKSPAEAKSPEKAKSPVKEEAKSPAEAK----SP 538
Query: 342 YRKGKPSPNNGRGP--SRSPYERERPSPENGRGGSRSPYRRERPSPDNGRVPSPNSMPEP 399
+ P+ + P ++SP E+E SPE + SP + E SP+ + P P
Sbjct: 539 EKAKSPTKEEAKSPEKAKSP-EKEAKSPEKAK----SPVKEEAKSPEKAKSPEKAKSPVK 593
Query: 400 RDSPGYDGADSPINERYRS 418
++ + A SP+ E +S
Sbjct: 594 EEAKSPEKAKSPVKEEAKS 612
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 90/209 (43%), Gaps = 41/209 (19%)
Query: 229 NGHSPDRNRDRSPDRGR--RRSPSPYRRERGSPDYGRG--SSRSPYRRERGSPDYGRV-- 282
SP++ +SP + ++ SP + E SP + ++SP + E SP +
Sbjct: 480 EAKSPEKEEAKSPAEVKSPEKAKSPAKEEAKSPAEAKSPEKAKSPVKEEAKSPAEAKSPE 539
Query: 283 RSPSPYRRDRGSPDYGRN---------SSRSPYKKERAAIGHGRGP--SRSPYRRDRGSP 331
++ SP + + SP+ ++ ++SP K+E + + P ++SP + + SP
Sbjct: 540 KAKSPTKEEAKSPEKAKSPEKEAKSPEKAKSPVKEEAKSPEKAKSPEKAKSPVKEEAKSP 599
Query: 332 ENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSPENGRG--GSRSPYRRERPSPDNGR 389
E SP ++ SP + SP + E SPE + ++SP + E SP+ +
Sbjct: 600 EKAK----SPVKEEAKSPEKAK----SPVKEEAKSPEKAKSPEKAKSPVKEEAKSPEKAK 651
Query: 390 VPSPNSMPEPRDSPGYDGADSPINERYRS 418
P + A SP+ E +S
Sbjct: 652 SP--------------EKAKSPVKEEAKS 666
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 102/231 (44%), Gaps = 38/231 (16%)
Query: 229 NGHSPDRNRDRSPDRGR--RRSPSPYRRERGSPDYGRG--SSRSPYRRERGSPDYGR--- 281
SP + +SP + ++ SP + E SP + ++SP + E SP+ +
Sbjct: 500 KAKSPAKEEAKSPAEAKSPEKAKSPVKEEAKSPAEAKSPEKAKSPTKEEAKSPEKAKSPE 559
Query: 282 --VRSP----SPYRRDRGSPDYGRN--SSRSPYKKERAAIGHGRGP----------SRSP 323
+SP SP + + SP+ ++ ++SP K+E + + P ++SP
Sbjct: 560 KEAKSPEKAKSPVKEEAKSPEKAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSP 619
Query: 324 YRRDRGSPENGHG--SSPSPYRKGKPSPNNGRGP--SRSPYERERPSPENGRGGSRSPYR 379
+ + SPE + SP ++ SP + P ++SP + E SPE + ++
Sbjct: 620 VKEEAKSPEKAKSPEKAKSPVKEEAKSPEKAKSPEKAKSPVKEEAKSPEKAKSPEKAKTL 679
Query: 380 RERPSPDNGRVPSPNSMPEPRD-SPGYDGADSPINERYRS----RSPPAED 425
+ SP+ + P+ P D SP + A SP+ E +S +SP ED
Sbjct: 680 DVK-SPE-AKTPAKEEAKSPADKSP--EKAKSPVKEEVKSPEKAKSPLKED 726
>gi|71018821|ref|XP_759641.1| hypothetical protein UM03494.1 [Ustilago maydis 521]
gi|74701642|sp|Q4P8R9.1|PABP_USTMA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|46099399|gb|EAK84632.1| hypothetical protein UM03494.1 [Ustilago maydis 521]
Length = 651
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 89/207 (42%), Gaps = 23/207 (11%)
Query: 40 RSHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAF 92
R Q I A ++ N + + + E+LF ++GK+ ++ GF F
Sbjct: 212 RKERQAKIEETRANFTNVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKSKGFGF 271
Query: 93 IYMDDERDAEDAIRGLDRTEFGRKGRRLRV----EWTKHERGIRRPGGGSSARRPSTNTR 148
+ +D +A+ A+ L ++F KG++L V + ++ E +RR +A+
Sbjct: 272 VNFEDHNEAQKAVDELHDSDF--KGQKLFVARAQKKSEREEELRR--SYEAAKNEKLAKF 327
Query: 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRR-------NFAFVQYEVQEDATRA 201
L++ N + R L F P+G I S +I R F FV Y E+A +A
Sbjct: 328 QGVNLYLKNIPESYDDER-LREEFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKA 386
Query: 202 LDATNMSKLTDRVISVEYAVRDDDDRR 228
+ N L +R + V A R D R+
Sbjct: 387 VSEMNGKMLDNRPLYVALAQRKDVRRQ 413
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 75/179 (41%), Gaps = 31/179 (17%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDAIRGL 108
++ G + ++ L +F G V D V +S G+A++ + D E A+ L
Sbjct: 49 LYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQL 108
Query: 109 DRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDL 168
+ + + R R+ W++ + +RR G G+ +F+ N D + L
Sbjct: 109 NYSLI--RNRPCRIMWSQRDPALRRTGQGN--------------IFIKNLDA-GIDNKAL 151
Query: 169 ERHFEPYGKIISVRIRRN------FAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
F +G I+S ++ N + FV YE E A A+ N L D+ + V + +
Sbjct: 152 HDTFAAFGNILSCKVATNETGSLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHI 210
>gi|242040955|ref|XP_002467872.1| hypothetical protein SORBIDRAFT_01g035680 [Sorghum bicolor]
gi|241921726|gb|EER94870.1| hypothetical protein SORBIDRAFT_01g035680 [Sorghum bicolor]
gi|448878354|gb|AGE46140.1| arginine/serine-rich splicing factor SR32 transcript I [Sorghum
bicolor]
Length = 286
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG++ +D+K G+AF+ +D RDAEDAI G D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDARDAEDAIAGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERG 130
F G RLRVE RG
Sbjct: 67 GYNF--DGHRLRVEAAHGGRG 85
>gi|297693630|ref|XP_002824116.1| PREDICTED: serine/arginine-rich splicing factor 9-like [Pongo
abelii]
Length = 221
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 81/160 (50%), Gaps = 11/160 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R+ DLE LF +YG++ +++K+ FAF+ ++D RDAEDAI G +
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREMELKNRHGLVPFAFVRLEDPRDAEDAIYGRNGY 75
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERH 171
++G+ RLRVE+ + G G P TR S +++ P +DL+ H
Sbjct: 76 DYGQC--RLRVEFPRTYGGRGGWPRGGRNGPP---TRRSDFRVLVSGLPPSGSWQDLKDH 130
Query: 172 FEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
G + +R++ V+Y +ED AL + +K
Sbjct: 131 MREAGDVCYADVRKDGVGMVEYLRKEDMEYALRKLHDTKF 170
>gi|108708090|gb|ABF95885.1| Pre-mRNA splicing factor SF2, putative, expressed [Oryza sativa
Japonica Group]
Length = 236
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 78/173 (45%), Gaps = 23/173 (13%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG++ +D+K G+AF+ +D RDAE+A G D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAEEACAGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPST--------NTRPSKTLFVINFDPY 161
F G RLRVE RG GGSS RPS +R S+ ++ P
Sbjct: 67 GYNF--DGHRLRVEPAHGGRG----NGGSSFDRPSNFGGGGRRGVSRHSEYRVLVTGLPS 120
Query: 162 HTRTRDLERHFEPYGKIISVRIRR----NFAFVQYEVQEDATRALDATNMSKL 210
+DL+ H G + + R V Y +D A+ + S+
Sbjct: 121 SASWQDLKDHMRKAGDVCFSEVYREGGGTVGIVDYTNYDDMKYAIKKLDDSEF 173
>gi|71996532|ref|NP_495309.3| Protein RSP-5, isoform b [Caenorhabditis elegans]
gi|351064336|emb|CCD72698.1| Protein RSP-5, isoform b [Caenorhabditis elegans]
Length = 166
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 41/70 (58%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y+AR+ D+ER + YGK++ + MK GFAF+ +D RDAEDA LD
Sbjct: 4 LYLGKIPYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTMEGS 63
Query: 117 GRRLRVEWTK 126
RL VE +
Sbjct: 64 SMRLVVEMAR 73
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 160 PYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYE---VQEDATRALDATNMSKLTDRVIS 216
PY+ R RD+ER + YGKI ++ ++ FAFV +E EDA LD M + R++
Sbjct: 10 PYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLV- 68
Query: 217 VEYA 220
VE A
Sbjct: 69 VEMA 72
>gi|302683360|ref|XP_003031361.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
gi|300105053|gb|EFI96458.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
Length = 624
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 88/218 (40%), Gaps = 19/218 (8%)
Query: 38 FRRSHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGF 90
R Q I A ++ N + + + E LF++YG+V +K GF
Sbjct: 206 ISRKERQSKIDEMRAHFTNLYVKNIDPEVTDEEFENLFKQYGQVQSSLLKRDDQGRNLGF 265
Query: 91 AFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV--EWTKHERGIRRPGGGSSARRPSTNTR 148
F+ + +A+ A+ L ++F GR+L V K ER AR+ N
Sbjct: 266 GFVNFETHEEAQKAVDALHESDF--HGRKLYVARAQKKAEREAELRKQYDQARQERMNKY 323
Query: 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN-------FAFVQYEVQEDATRA 201
L++ N + L FEP+G I S R+ R+ F FV Y ++AT+A
Sbjct: 324 QGVNLYIKNLED-DVDDEKLRAEFEPFGTITSCRVMRDERGKSKGFGFVCYSAPDEATKA 382
Query: 202 LDATNMSKLTDRVISVEYAVRDDDDRRNGHSPDRNRDR 239
+ N + + + V A R + R+ S R +
Sbjct: 383 VAEMNNKMIGSKPLYVSLAQRKEIRRQQLESQIAQRQQ 420
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 25/175 (14%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-------GFAFIYMDDERDAEDAIRGLD 109
IF N + L F +G V + + G+ F++ + AE+AI+ ++
Sbjct: 132 IFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGNSKGYGFVHYETAEAAENAIKSVN 191
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLE 169
K + ++ ER + R TN L+V N DP T + E
Sbjct: 192 GMLLNDKKVYVGPHISRKERQSKI----DEMRAHFTN------LYVKNIDPEVT-DEEFE 240
Query: 170 RHFEPYGKIISVRIRRN-------FAFVQYEVQEDATRALDATNMSKLTDRVISV 217
F+ YG++ S ++R+ F FV +E E+A +A+DA + S R + V
Sbjct: 241 NLFKQYGQVQSSLLKRDDQGRNLGFGFVNFETHEEAQKAVDALHESDFHGRKLYV 295
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 9/105 (8%)
Query: 135 GGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN-------- 186
G +SA NT S +L+V DP T + E F G + S+R+ R+
Sbjct: 26 GYAASAPTHGANTATSASLYVGELDPTVTESMLFEI-FNMIGPVASIRVCRDAVTRRSLG 84
Query: 187 FAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGH 231
+A+V Y D RAL+ N S + +R + ++ RD R+ G
Sbjct: 85 YAYVNYLNAADGERALEQLNYSSIKNRPCRIMWSQRDPALRKTGQ 129
>gi|225712990|gb|ACO12341.1| Serine-arginine protein 55 [Lepeophtheirus salmonis]
gi|290462763|gb|ADD24429.1| Serine-arginine protein 55 [Lepeophtheirus salmonis]
gi|290562097|gb|ADD38445.1| Serine-arginine protein 55 [Lepeophtheirus salmonis]
Length = 250
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ GN + R+ D+E+LF+ YG++ V +KSG+ F+ DD RDA+D + +D EF +
Sbjct: 7 VYVGNLPENVRERDVEKLFKEYGRIREVVIKSGYGFVEFDDPRDADDVVNDMDGKEF--Q 64
Query: 117 GRRLRVEWT 125
G R+RVE
Sbjct: 65 GGRVRVEMA 73
>gi|336465131|gb|EGO53371.1| hypothetical protein NEUTE1DRAFT_52411 [Neurospora tetrasperma FGSC
2508]
Length = 597
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 103/253 (40%), Gaps = 46/253 (18%)
Query: 58 FCGNFEYDARQSDLERLFRRYGKVDRV-------DMKSGFAFIYMDDERDAEDAIRGLDR 110
F N +DA + L+ F ++G V V + G+ F+ E+A +D
Sbjct: 353 FVRNIVFDATEEHLKGAFEKFGNVTDVFLARDPRGLSKGYGFVTFATREALEEACSQVDG 412
Query: 111 TEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLER 170
+ + GRR+ VE + + R S PS LF+ N PY T +L
Sbjct: 413 SFW--HGRRISVEPRR-----------AKVNRGSAVGEPSACLFIGNI-PYETTDAELNN 458
Query: 171 HFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV- 221
F + VR+ R FA + E A AL+ ++L +R I ++YA
Sbjct: 459 IFVGIDGLKDVRVAVDRATGWPRGFAHADFVDVEAAVNALEKLQGTQLGERTIKIDYAQP 518
Query: 222 ------RDDDDRRNGHSPDRNRD------RSPDR-GRRRSPSPYRRERGSPDYGRGSSRS 268
R+++ R + P + RD RS +R G RS Y RE GS +Y R
Sbjct: 519 VAARQPRENNGERREYRPRQQRDDQRDGQRSYNRDGGNRS---YNREGGSRNYNRDGGNR 575
Query: 269 PYRRERGSPDYGR 281
Y RE G +Y R
Sbjct: 576 SYNREGGDRNYNR 588
>gi|328770953|gb|EGF80994.1| hypothetical protein BATDEDRAFT_36927 [Batrachochytrium
dendrobatidis JAM81]
Length = 246
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 17/187 (9%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G D + ++ERL R +G++ V +GFAF+ D RDA D +R LD + + R+
Sbjct: 8 VYIGRLPRDITEREVERLAREFGRIRDVRCLNGFAFVEYSDSRDARDCVRELDGSRYDRE 67
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYG 176
RL V+ K G R S++ R V+ P T +DL+ F G
Sbjct: 68 --RLSVQPAKS-------GSDRRDRPASSSLRRGDYGIVVQGLPARTSWQDLKDLFRKVG 118
Query: 177 KIISVRIRRNF-AFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSPDR 235
+I I + V++ + D A++ + ++ VISV+ DR + D
Sbjct: 119 DVIFTNIDNSGDGIVEFTSETDKNSAIEQFDKTEFQGAVISVK-------DRDAANGKDS 171
Query: 236 NRDRSPD 242
+ RSPD
Sbjct: 172 DARRSPD 178
>gi|410930984|ref|XP_003978877.1| PREDICTED: uncharacterized protein LOC101068731 [Takifugu rubripes]
Length = 379
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 19/173 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y R+ D++R F YGK+ +D+K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 4 VYIGRLSYHVREKDIQRFFSGYGKLMEIDLKNGYGFVEFEDNRDADDAVYELNGKELC-- 61
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTR---------PSKTLFVINFDPYHTRT-- 165
G R+ VE H RG RR ++ P +T + + + +R
Sbjct: 62 GERVIVE---HARGPRRDRDFYGGGSGYSSRSRTGRDKYGPPVRTEYRLVVENLSSRCSW 118
Query: 166 RDLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
+DL+ G++ + + R N +++ D RALD + + + R I
Sbjct: 119 QDLKDFMRQAGEVTYADAHKERTNEGVIEFRSHSDMKRALDKLDGTDINGRKI 171
>gi|426247384|ref|XP_004017466.1| PREDICTED: serine/arginine-rich splicing factor 9 isoform 2 [Ovis
aries]
Length = 200
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 88/174 (50%), Gaps = 12/174 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG-----FAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R+ DLE LF +YG++ +++K+ FAF+ +D RDAEDAI G +
Sbjct: 16 IYVGNLPSDVREKDLEDLFYKYGRISEIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERH 171
++G+ RLRVE+ + G G + P TR S +++ P +DL+ H
Sbjct: 76 DYGQC--RLRVEFPRTYGGRGGWPRGGRSGPP---TRRSDFRVLVSGLPPSGSWQDLKDH 130
Query: 172 FEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL-TDRVISVEYAVRD 223
G + ++++ V+Y +ED AL + +K + + + A++D
Sbjct: 131 MREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDETKFRSHECMKINLAMKD 184
>gi|225717806|gb|ACO14749.1| Serine-arginine protein 55 [Caligus clemensi]
Length = 189
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ GN + R+ D+E+ F+ YG++ V +KSG+ F+ DD RDA+D + +D EF +
Sbjct: 7 VYVGNLPENVRERDVEKFFKEYGRIREVVIKSGYGFVEFDDPRDADDVVNDMDGKEF--Q 64
Query: 117 GRRLRVE 123
G R+RVE
Sbjct: 65 GGRVRVE 71
>gi|225450797|ref|XP_002283865.1| PREDICTED: pre-mRNA-splicing factor SF2-like [Vitis vinifera]
Length = 288
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 82/180 (45%), Gaps = 25/180 (13%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R ++ GN D R+ ++E LF +YG + +D+K G+AF+ +D RDAEDAI G D
Sbjct: 7 RTVYVGNLPGDIREREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDARDAEDAIYGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN---TRPSKTLFVINFDPYHTRTR 166
F G RLRVE RG S+ S+ +R S+ ++ PY +
Sbjct: 67 GYNF--DGHRLRVELAHGGRGQSSSVDHYSSYSSSSRGGLSRHSEYRVLVTGLPYSASWQ 124
Query: 167 DLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDD 226
DL+ H G + ++ R + T +D TN + +YA+R DD
Sbjct: 125 DLKDHMRRAGDVCFSQVFRG--------RGGMTGIVDYTNYDDM-------KYAIRKLDD 169
>gi|322792693|gb|EFZ16561.1| hypothetical protein SINV_05882 [Solenopsis invicta]
Length = 386
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 66/158 (41%), Gaps = 43/158 (27%)
Query: 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 112
M +F G Y R+ DLE+ FR+YG++ V MK+GFAF+ ++ +
Sbjct: 1 MSTRVFVGGLTYRVRERDLEKFFRKYGRIKEVAMKNGFAFVV---------SLMWFNCFF 51
Query: 113 FGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHF 172
+ G R+ V GG PY TR RDLER F
Sbjct: 52 YSMVGTRVYV-------------GGL---------------------PYGTRERDLERFF 77
Query: 173 EPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKL 210
YG+ V I+ + FV+++ DA A+ N +L
Sbjct: 78 RGYGRFRDVLIKNGYGFVEFDDYRDADDAVYELNGKEL 115
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 88/188 (46%), Gaps = 12/188 (6%)
Query: 36 LGFRRSHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYM 95
F S + + + ++ G Y R+ DLER FR YG+ V +K+G+ F+
Sbjct: 38 FAFVVSLMWFNCFFYSMVGTRVYVGGLPYGTRERDLERFFRGYGRFRDVLIKNGYGFVEF 97
Query: 96 DDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER-GIRRPGGGSSARRPST--NTRPSKT 152
DD RDA+DA+ L+ E + R + +H+R + R +S+ + S P++T
Sbjct: 98 DDYRDADDAVYELNGKELLGESR----DDMRHDRDSVNRNTRTASSYKQSLPRYGPPTRT 153
Query: 153 LFVINFDPYHTRT--RDLERHFEPYGKIISV---RIRRNFAFVQYEVQEDATRALDATNM 207
+ + + +R +DL+ + G++ + RRN V++ D A+D +
Sbjct: 154 EYRLTVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFATYSDLKNAIDKLDD 213
Query: 208 SKLTDRVI 215
++L R I
Sbjct: 214 TELNGRRI 221
>gi|440792856|gb|ELR14064.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 239
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 62 FEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 121
D R DLE LF +YGK+ R D+K G+ F+ +D RDA+DA+R LD G R+
Sbjct: 28 LALDCRPRDLEDLFYKYGKLTRCDVKRGYGFVEYEDRRDAQDALRDLDGVSV--LGTRIA 85
Query: 122 VEWTKHER 129
+EW K R
Sbjct: 86 IEWAKGAR 93
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 163 TRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRAL-DATNMSKLTDRVISVEYA 220
R RDLE F YGK+ ++R + FV+YE + DA AL D +S L R I++E+A
Sbjct: 32 CRPRDLEDLFYKYGKLTRCDVKRGYGFVEYEDRRDAQDALRDLDGVSVLGTR-IAIEWA 89
>gi|115463447|ref|NP_001055323.1| Os05g0364600 [Oryza sativa Japonica Group]
gi|113578874|dbj|BAF17237.1| Os05g0364600 [Oryza sativa Japonica Group]
Length = 294
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 75/167 (44%), Gaps = 14/167 (8%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG++ +D+K G+AF+ +D RDA+DAI G
Sbjct: 7 RTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAQDAIYGRH 66
Query: 110 RTEFGRKGRRLRVEWTKHERG--IRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRD 167
+F G RLRVE RG R SSA R R + V P +D
Sbjct: 67 GYDF--DGHRLRVELAHGGRGPSFDRSSSYSSAGRRGAAKRTDYRVMVTGL-PSSASWQD 123
Query: 168 LERHFEPYGKIISVRIRR----NFAFVQYEVQEDATRALDATNMSKL 210
L+ H G + + R V Y ED +A+ + S+
Sbjct: 124 LKDHMRRAGDVCFSDVYREGGATIGIVDYTNYEDMKQAIRKLDDSEF 170
>gi|168009612|ref|XP_001757499.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691193|gb|EDQ77556.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 262
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG++ +D+K G+ FI +D RDAEDAIRG D
Sbjct: 7 RTIYVGNLPGDVREREIEDLFYKYGRIVDIDLKLPPRPPGYCFIEFEDGRDAEDAIRGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERG 130
F G RLRVE RG
Sbjct: 67 GYNF--DGNRLRVEIAHGGRG 85
>gi|218196647|gb|EEC79074.1| hypothetical protein OsI_19658 [Oryza sativa Indica Group]
Length = 328
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 73/159 (45%), Gaps = 14/159 (8%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG++ +D+K G+AF+ +D RDA+DAI G +
Sbjct: 30 RTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAQDAIYGRN 89
Query: 110 RTEFGRKGRRLRVEWTKHERG--IRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRD 167
+F G RLRVE RG R SSA R R + V P +D
Sbjct: 90 GYDF--DGHRLRVELAHGGRGPSFDRSSSYSSAGRRGAAKRTDYRVMVTGL-PSSASWQD 146
Query: 168 LERHFEPYGKIISVRIRR----NFAFVQYEVQEDATRAL 202
L+ H G + + R V Y ED +A+
Sbjct: 147 LKDHMRRAGDVCFSDVYREGGATIGIVDYTNYEDMKQAI 185
>gi|355557751|gb|EHH14531.1| hypothetical protein EGK_00474, partial [Macaca mulatta]
Length = 477
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 82/158 (51%), Gaps = 18/158 (11%)
Query: 71 LERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERG 130
+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ + G R+ VE H RG
Sbjct: 1 VERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLC--GERVIVE---HARG 55
Query: 131 IRRPGGGSSAR-----RPSTNTR---PSKTLFVINFDPYHTRT--RDLERHFEPYGKII- 179
RR G S R R S + P++T + + + +R +DL+ + G++
Sbjct: 56 PRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTY 115
Query: 180 --SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
+ + R+N +++ D RAL+ + +++ R I
Sbjct: 116 ADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 153
>gi|410916817|ref|XP_003971883.1| PREDICTED: serine/arginine-rich splicing factor 5-like [Takifugu
rubripes]
Length = 310
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 36/57 (63%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
IF G AR+ D+ER F+ YG++ +D+K GF F+ DD RDAEDA+ LD E
Sbjct: 6 IFIGRLSPTAREKDVERFFKGYGRIRDIDLKKGFGFVEFDDPRDAEDAVYELDGKEL 62
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 153 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTD 212
+F+ P R +D+ER F+ YG+I + +++ F FV+++ DA A+ + +L +
Sbjct: 6 IFIGRLSPT-AREKDVERFFKGYGRIRDIDLKKGFGFVEFDDPRDAEDAVYELDGKELCN 64
Query: 213 RVISVEYA 220
+++E+A
Sbjct: 65 ERVTIEHA 72
>gi|395505266|ref|XP_003756964.1| PREDICTED: serine/arginine-rich splicing factor 6 isoform 2
[Sarcophilus harrisii]
Length = 321
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 86/174 (49%), Gaps = 20/174 (11%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y R+ D++R F YG++ VD+K+G+ F+ +D RDA+DA+ L+ +
Sbjct: 4 VYIGRLSYHVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKDLC-- 61
Query: 117 GRRLRVEWTKHERGIRRPGGG-------SSARRPSTNTR---PSKTLFVINFDPYHTRT- 165
G R+ VE H RG RR G S+RR + + P +T + + + +R
Sbjct: 62 GERVIVE---HARGPRRDRDGYSYGSRRYSSRRATGRDKYGPPVRTEYRLIVENLSSRCS 118
Query: 166 -RDLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
+DL+ G++ + + R N +++ D RALD + +++ R I
Sbjct: 119 WQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNI 172
>gi|328849877|gb|EGF99050.1| hypothetical protein MELLADRAFT_79554 [Melampsora larici-populina
98AG31]
Length = 259
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 82/168 (48%), Gaps = 7/168 (4%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFG 114
R ++ G +A ++D+E+ F RYG + V + +GF F+ D RDAEDA+ L+ EF
Sbjct: 6 RRLYIGRIPQEATRTDIEKYFGRYGTLLDVRIMAGFGFLEYDQVRDAEDAVHDLNGREF- 64
Query: 115 RKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLF--VINFDPYHTRTRDLERHF 172
G RL VE+ K RG R GG P ++ F ++ + T +DL+
Sbjct: 65 -MGDRLIVEFAKAPRGGREMYGGGGGGSYGGGGGPRRSGFRLIVKGISHETSWQDLKDFA 123
Query: 173 EPYGKIISVRIRRNF---AFVQYEVQEDATRALDATNMSKLTDRVISV 217
G +I + RN ++Y Q+DA AL + + L V+++
Sbjct: 124 RQAGNVIRADVDRNMPGEGLIEYSSQDDADNALRKLDGTDLKGMVVTL 171
>gi|307103808|gb|EFN52065.1| hypothetical protein CHLNCDRAFT_36976 [Chlorella variabilis]
Length = 302
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 46/75 (61%), Gaps = 7/75 (9%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
++ GN D R+ ++E LF +YGKV +DMK+ FAF+ D RDAEDA+RG D
Sbjct: 12 VYVGNLPDDIREREVEDLFSKYGKVVSIDMKAPVRPPAFAFVEFADPRDAEDAVRGRDGY 71
Query: 112 EFGRKGRRLRVEWTK 126
+F G RLRVE K
Sbjct: 72 DF--YGNRLRVELAK 84
>gi|296089689|emb|CBI39508.3| unnamed protein product [Vitis vinifera]
Length = 249
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 82/180 (45%), Gaps = 25/180 (13%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R ++ GN D R+ ++E LF +YG + +D+K G+AF+ +D RDAEDAI G D
Sbjct: 7 RTVYVGNLPGDIREREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDARDAEDAIYGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN---TRPSKTLFVINFDPYHTRTR 166
F G RLRVE RG S+ S+ +R S+ ++ PY +
Sbjct: 67 GYNF--DGHRLRVELAHGGRGQSSSVDHYSSYSSSSRGGLSRHSEYRVLVTGLPYSASWQ 124
Query: 167 DLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDD 226
DL+ H G + ++ R + T +D TN + +YA+R DD
Sbjct: 125 DLKDHMRRAGDVCFSQVFRG--------RGGMTGIVDYTNYDDM-------KYAIRKLDD 169
>gi|219363191|ref|NP_001137034.1| uncharacterized protein LOC100217203 [Zea mays]
gi|52140005|gb|AAU29328.1| ASF/SF2-like pre-mRNA splicing factor SRP32 [Zea mays]
gi|194693886|gb|ACF81027.1| unknown [Zea mays]
gi|194698082|gb|ACF83125.1| unknown [Zea mays]
gi|413955774|gb|AFW88423.1| ASF/SF2-like pre-mRNA splicing factor SRP32 isoform 1 [Zea mays]
gi|413955775|gb|AFW88424.1| ASF/SF2-like pre-mRNA splicing factor SRP32 isoform 2 [Zea mays]
Length = 285
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YGK+ +D+K G+AF+ +D RDAE+AI G D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFYKYGKIVDIDLKVPPRPPGYAFVEFEDPRDAEEAIAGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERG 130
F G RLRVE RG
Sbjct: 67 GYNF--DGHRLRVEAAHGGRG 85
>gi|348517719|ref|XP_003446380.1| PREDICTED: serine/arginine-rich splicing factor 5-like [Oreochromis
niloticus]
Length = 293
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 36/57 (63%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
IF G AR+ D+ER F+ YG++ +D+K GF F+ DD RDAEDA+ LD E
Sbjct: 6 IFIGRLSPSAREKDVERFFKGYGRIRDIDLKRGFGFVEFDDPRDAEDAVYELDGKEL 62
>gi|413955773|gb|AFW88422.1| ASF/SF2-like pre-mRNA splicing factor SRP32 [Zea mays]
Length = 283
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YGK+ +D+K G+AF+ +D RDAE+AI G D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFYKYGKIVDIDLKVPPRPPGYAFVEFEDPRDAEEAIAGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERG 130
F G RLRVE RG
Sbjct: 67 GYNF--DGHRLRVEAAHGGRG 85
>gi|307078155|ref|NP_001182495.1| splicing factor, arginine/serine-rich 9 [Sus scrofa]
Length = 221
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 80/160 (50%), Gaps = 11/160 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R+ DLE LF +YG++ +++K+ FAF+ +D RDAEDAI G +
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERH 171
++G+ RLRVE+ + G G P TR S +++ P +DL+ H
Sbjct: 76 DYGQC--RLRVEFPRTYGGRGGWPRGGRNGPP---TRRSDFRVLVSGLPPSGSWQDLKDH 130
Query: 172 FEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
G + ++++ V+Y +ED AL + +K
Sbjct: 131 MREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 170
>gi|52140012|gb|AAU29333.1| ASF/SF2-like pre-mRNA splicing factor SRP31 [Zea mays]
gi|194698470|gb|ACF83319.1| unknown [Zea mays]
gi|413944987|gb|AFW77636.1| pre-mRNA-splicing factor SF2 [Zea mays]
Length = 276
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 73/162 (45%), Gaps = 18/162 (11%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R+ +++ LF +YG++ +D+K GFAF+ +D RDAEDAI G D
Sbjct: 9 IYVGNLPGDIREREVDDLFYKYGRIVEIDLKIPPRPPGFAFVEFEDARDAEDAIYGRDGY 68
Query: 112 EFGRKGRRLRVEWTKHERGI---RRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDL 168
F G RLRVE RG R SSA + + R + V P +DL
Sbjct: 69 NF--DGHRLRVELAHGGRGTSSFDRSSSYSSAGQRGASKRSDYRVMVTGL-PSSASWQDL 125
Query: 169 ERHFEPYGKIISVRIRRNFA-------FVQYEVQEDATRALD 203
+ H G + + R + YE + A R LD
Sbjct: 126 KDHMRRAGDVCFTDVYREAGATIGIADYTNYEDMKHAIRKLD 167
>gi|348585449|ref|XP_003478484.1| PREDICTED: serine/arginine-rich splicing factor 9-like [Cavia
porcellus]
gi|351702214|gb|EHB05133.1| Splicing factor, arginine/serine-rich 9 [Heterocephalus glaber]
Length = 221
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 80/160 (50%), Gaps = 11/160 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R+ DLE LF +YG++ +++K+ FAF+ +D RDAEDAI G +
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERH 171
++G+ RLRVE+ + G G P TR S +++ P +DL+ H
Sbjct: 76 DYGQC--RLRVEFPRTYGGRGGWPRGGRTGPP---TRRSDFRVLVSGLPPSGSWQDLKDH 130
Query: 172 FEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
G + ++++ V+Y +ED AL + +K
Sbjct: 131 MREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 170
>gi|417397369|gb|JAA45718.1| Putative splicing factor arginine/serine-rich 9-like protein
[Desmodus rotundus]
gi|431914272|gb|ELK15530.1| Splicing factor, arginine/serine-rich 9 [Pteropus alecto]
Length = 221
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 80/160 (50%), Gaps = 11/160 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R+ DLE LF +YG++ +++K+ FAF+ +D RDAEDAI G +
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERH 171
++G+ RLRVE+ + G G P TR S +++ P +DL+ H
Sbjct: 76 DYGQC--RLRVEFPRTYGGRGGWPRGGRNGPP---TRRSDFRVLVSGLPPSGSWQDLKDH 130
Query: 172 FEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
G + ++++ V+Y +ED AL + +K
Sbjct: 131 MREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 170
>gi|209155162|gb|ACI33813.1| Splicing factor, arginine/serine-rich 5 [Salmo salar]
Length = 316
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 36/57 (63%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
IF G AR+ D+ER F+ YG++ +D+K GF F+ DD RDAEDA+ LD E
Sbjct: 6 IFVGRLNPSAREKDVERFFKGYGRIRDIDLKRGFGFVEFDDPRDAEDAVYELDGKEL 62
>gi|452987975|gb|EME87730.1| hypothetical protein MYCFIDRAFT_120538, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 179
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 84/181 (46%), Gaps = 26/181 (14%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-------GFAFIYMDDERDAEDAIRG 107
+ I+ GN ++ LE F R+G+V + + GF FI + DA+ AIR
Sbjct: 3 KIIYIGNLFFEVTAPQLEAEFGRFGEVTNSRIVTDTNGRSKGFGFIEFANRDDADRAIRE 62
Query: 108 LDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRD 167
LD+ F +GRR+ V++ P + A+R + NT+PSKTLF+ N Y RD
Sbjct: 63 LDQKVF--EGRRMSVQY-------HVPRERNKAQR-NVNTKPSKTLFIGNM-SYQMSDRD 111
Query: 168 LERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 219
L F ++ VR+ R FA + + AT+A + + R + V+Y
Sbjct: 112 LNDLFRQIRNVLDVRVAIDRRSGQPRGFAHADFVDEASATKAKELLEQKVVYGRQLRVDY 171
Query: 220 A 220
+
Sbjct: 172 S 172
>gi|384950066|gb|AFI38638.1| serine/arginine-rich splicing factor 9 [Macaca mulatta]
Length = 221
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 80/160 (50%), Gaps = 11/160 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R+ DLE LF +YG++ +++K+ FAF+ +D RDAEDAI G +
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKTRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERH 171
++G+ RLRVE+ + G G P TR S +++ P +DL+ H
Sbjct: 76 DYGQC--RLRVEFPRTYGGRGGWPRGGRNGPP---TRRSDFRVLVSGLPPSGSWQDLKDH 130
Query: 172 FEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
G + ++++ V+Y +ED AL + +K
Sbjct: 131 MREAGDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTKF 170
>gi|296490264|tpg|DAA32377.1| TPA: splicing factor, arginine/serine-rich 9-like [Bos taurus]
Length = 221
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 11/160 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R+ DLE LF +YG + +++K+ FAF+ +D RDAEDA+ G +
Sbjct: 16 IYVGNLPNDVREKDLEDLFYKYGHISEIELKNRHGLVPFAFVRFEDPRDAEDAVYGRNGY 75
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERH 171
++G+ RLRVE+ + G G + P TR S +++ P +DL+ H
Sbjct: 76 DYGQC--RLRVEFPRTYGGRGGWPRGGRSGPP---TRRSDFRVLVSGLPPSGSWQDLKDH 130
Query: 172 FEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
G + ++++ V+Y +ED AL + +K
Sbjct: 131 MREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDETKF 170
>gi|148224986|ref|NP_001080148.1| splicing factor, arginine/serine-rich 6 [Xenopus laevis]
gi|28422195|gb|AAH44265.1| B52-prov protein [Xenopus laevis]
Length = 660
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 88/182 (48%), Gaps = 26/182 (14%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y R+ D++R F YGK+ VD+K+G+ F+ +D RDA+DA+ L+ +
Sbjct: 4 VYVGRLGYHVREKDIQRFFGSYGKLLEVDLKNGYGFVEFEDSRDADDAVYELNGKDLC-- 61
Query: 117 GRRLRVEWTKHERGIRRP----GGGSSARRPS----TNTR--------PSKTLFVINFDP 160
G R+ VE H RG RR G GS ++ S N R P +T F + +
Sbjct: 62 GERVIVE---HARGPRRDRDGYGYGSRSKHGSPGGYRNQRSGRDKYGPPVRTEFRLVVEN 118
Query: 161 YHTRT--RDLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
+R +DL+ G++ + + R N +++ D RA++ + +++ R I
Sbjct: 119 LSSRCSWQDLKDFMRQAGEVTYADAHKERPNEGVIEFRSYSDLKRAVEKLDGTEINGRRI 178
Query: 216 SV 217
+
Sbjct: 179 RL 180
>gi|242052053|ref|XP_002455172.1| hypothetical protein SORBIDRAFT_03g005500 [Sorghum bicolor]
gi|241927147|gb|EES00292.1| hypothetical protein SORBIDRAFT_03g005500 [Sorghum bicolor]
gi|448878302|gb|AGE46114.1| arginine/serine-rich splicing factor RS2Z34 transcript I [Sorghum
bicolor]
Length = 296
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G R DLE LF RYG+V VDMK FAF+ D RDA+DA LD EF
Sbjct: 26 LYVGRVSSRTRTRDLEDLFGRYGRVRYVDMKHEFAFVEFSDPRDADDARYHLDDREF--D 83
Query: 117 GRRLRVEWTKHERGIRRPGGGS 138
G RL VE+ K GI R GGS
Sbjct: 84 GSRLIVEFAK---GIPRGPGGS 102
>gi|47220462|emb|CAG03242.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1292
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y R+ D++R F YGK+ +D+K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 4 VYIGRLSYHVREKDIQRFFSGYGKLMEIDLKNGYGFVEFEDNRDADDAVYELNGKELC-- 61
Query: 117 GRRLRVEWTKHERGIRR 133
G R+ VE H RG RR
Sbjct: 62 GERVIVE---HARGPRR 75
>gi|356505580|ref|XP_003521568.1| PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-splicing factor SF2-like
[Glycine max]
Length = 326
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 87/189 (46%), Gaps = 28/189 (14%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R ++ GN D R+ ++E LF +YG + +D+K G+AF+ +D +DAEDAIRG D
Sbjct: 7 RTVYVGNLPGDIREREVEDLFLKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERGIR----RPGGGSSARRPSTNTRPSKTLFVINFDPYHTRT 165
+F G RLRVE RG R S+ R +R S+ +++ P
Sbjct: 67 GYDF--DGHRLRVEPAHGGRGHSSSRDRYNSHSNGRGGRGVSRRSEYRVLVSGLPSSASW 124
Query: 166 RDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR--D 223
+DL+ H G + ++ + T +D TN + +YA++ D
Sbjct: 125 QDLKDHMRKAGDVCFSQV--------FHDGRGTTGIVDYTNYDDM-------KYAIKKLD 169
Query: 224 DDDRRNGHS 232
D + RN S
Sbjct: 170 DSEFRNAFS 178
>gi|302828648|ref|XP_002945891.1| hypothetical protein VOLCADRAFT_72532 [Volvox carteri f.
nagariensis]
gi|300268706|gb|EFJ52886.1| hypothetical protein VOLCADRAFT_72532 [Volvox carteri f.
nagariensis]
Length = 288
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 83/174 (47%), Gaps = 26/174 (14%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R IF GN D R+ +L+ +F ++G++ +D+K GFAFI DD R AE+A R +
Sbjct: 10 RAIFVGNLPIDVREKELDEIFYKFGRIRMIDIKKPARPPGFAFIEFDDPRSAEEAARRRN 69
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPS-TNTRPSKT-----LFVINFDPYHT 163
EF G R+RVE I R G GS +++P RP + L+V P
Sbjct: 70 NYEFA--GMRMRVE-------IARGGEGSGSQQPLRIGYRPIRNTLGFRLYVKGL-PRSA 119
Query: 164 RTRDLERHFEPYGKIISVRIRRN-----FAFVQYEVQEDATRALDATNMSKLTD 212
+DL+ K + I ++ V++E ++D AL + S+ T+
Sbjct: 120 SWQDLKDFVRRVCKPLYTEIFKDHRDNVLGVVEFESKDDMKAALRKLDDSEFTN 173
>gi|74226809|dbj|BAE27050.1| unnamed protein product [Mus musculus]
Length = 339
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 24/180 (13%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y+ R+ D++R F YG++ +D+K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNSKELC-- 61
Query: 117 GRRLRVEWTKHERGIRR---------PGGGSSARRPSTNTR-----PSKTLFVINFDPYH 162
G R+ VE H RG RR GG T+ R P +T + + +
Sbjct: 62 GERVIVE---HARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLS 118
Query: 163 TRT--RDLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
+R +DL+ G++ + + R N +++ D RALD + +++ R I +
Sbjct: 119 SRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRL 178
>gi|327282648|ref|XP_003226054.1| PREDICTED: serine/arginine-rich splicing factor 9-like [Anolis
carolinensis]
Length = 245
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 81/160 (50%), Gaps = 12/160 (7%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG-----FAFIYMDDERDAEDAIRGLDRT 111
I+ GN + R+ DLE LF +YG++ +++KS FAF+ +D RDAEDA+ G +
Sbjct: 38 IYVGNLPANVREKDLEELFYKYGRIRDIELKSKRGLVPFAFVRFEDPRDAEDAVYGRNGY 97
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERH 171
++G+ RLRVE+ K RG GGG R + R + V P + +DL+ H
Sbjct: 98 DYGQC--RLRVEFPKPSRGRGGFGGGPRGRNGPPSRRSEFRVLVSGLPPSGS-WQDLKDH 154
Query: 172 FEPYGKIISVRIRRN----FAFVQYEVQEDATRALDATNM 207
G + ++++ F++ E E A R LD T
Sbjct: 155 MREAGDVCYADVQKDGMGVVEFLRKEDMEYALRKLDDTKF 194
>gi|4506903|ref|NP_003760.1| serine/arginine-rich splicing factor 9 [Homo sapiens]
gi|114647286|ref|XP_001160785.1| PREDICTED: serine/arginine-rich splicing factor 9 isoform 2 [Pan
troglodytes]
gi|297693182|ref|XP_002823915.1| PREDICTED: serine/arginine-rich splicing factor 9 [Pongo abelii]
gi|332262536|ref|XP_003280317.1| PREDICTED: serine/arginine-rich splicing factor 9 [Nomascus
leucogenys]
gi|402887863|ref|XP_003907300.1| PREDICTED: serine/arginine-rich splicing factor 9 [Papio anubis]
gi|410047369|ref|XP_003952371.1| PREDICTED: serine/arginine-rich splicing factor 9 [Pan troglodytes]
gi|3929377|sp|Q13242.1|SRSF9_HUMAN RecName: Full=Serine/arginine-rich splicing factor 9; AltName:
Full=Pre-mRNA-splicing factor SRp30C; AltName:
Full=Splicing factor, arginine/serine-rich 9
gi|1049078|gb|AAA93069.1| SRp30c [Homo sapiens]
gi|4099429|gb|AAD00626.1| splicing factor SRp30c [Homo sapiens]
gi|62739648|gb|AAH93973.1| Splicing factor, arginine/serine-rich 9 [Homo sapiens]
gi|62740064|gb|AAH93971.1| Splicing factor, arginine/serine-rich 9 [Homo sapiens]
gi|119618600|gb|EAW98194.1| splicing factor, arginine/serine-rich 9 [Homo sapiens]
gi|261861074|dbj|BAI47059.1| splicing factor, arginine/serine-rich 9 [synthetic construct]
gi|380817540|gb|AFE80644.1| serine/arginine-rich splicing factor 9 [Macaca mulatta]
gi|383422449|gb|AFH34438.1| serine/arginine-rich splicing factor 9 [Macaca mulatta]
gi|410227624|gb|JAA11031.1| serine/arginine-rich splicing factor 9 [Pan troglodytes]
gi|410227626|gb|JAA11032.1| serine/arginine-rich splicing factor 9 [Pan troglodytes]
gi|410227628|gb|JAA11033.1| serine/arginine-rich splicing factor 9 [Pan troglodytes]
gi|410263740|gb|JAA19836.1| serine/arginine-rich splicing factor 9 [Pan troglodytes]
gi|410263742|gb|JAA19837.1| serine/arginine-rich splicing factor 9 [Pan troglodytes]
gi|410263744|gb|JAA19838.1| serine/arginine-rich splicing factor 9 [Pan troglodytes]
gi|410305344|gb|JAA31272.1| serine/arginine-rich splicing factor 9 [Pan troglodytes]
gi|410305346|gb|JAA31273.1| serine/arginine-rich splicing factor 9 [Pan troglodytes]
gi|410305348|gb|JAA31274.1| serine/arginine-rich splicing factor 9 [Pan troglodytes]
gi|410340983|gb|JAA39438.1| serine/arginine-rich splicing factor 9 [Pan troglodytes]
gi|410340985|gb|JAA39439.1| serine/arginine-rich splicing factor 9 [Pan troglodytes]
Length = 221
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 80/160 (50%), Gaps = 11/160 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R+ DLE LF +YG++ +++K+ FAF+ +D RDAEDAI G +
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERH 171
++G+ RLRVE+ + G G P TR S +++ P +DL+ H
Sbjct: 76 DYGQC--RLRVEFPRTYGGRGGWPRGGRNGPP---TRRSDFRVLVSGLPPSGSWQDLKDH 130
Query: 172 FEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
G + ++++ V+Y +ED AL + +K
Sbjct: 131 MREAGDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTKF 170
>gi|268531628|ref|XP_002630941.1| C. briggsae CBR-RSP-5 protein [Caenorhabditis briggsae]
Length = 213
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 39/70 (55%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
I+ G Y AR+ D+ER + YG++ + MK GFAF+ +D RDAEDA LD
Sbjct: 4 IYLGKIPYHARERDIERFLKGYGRITNISMKYGFAFVDFEDYRDAEDACHDLDGKTMDGS 63
Query: 117 GRRLRVEWTK 126
R+ VE K
Sbjct: 64 SMRVVVEMAK 73
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 160 PYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYE---VQEDATRALDATNMSKLTDRVIS 216
PYH R RD+ER + YG+I ++ ++ FAFV +E EDA LD M + RV+
Sbjct: 10 PYHARERDIERFLKGYGRITNISMKYGFAFVDFEDYRDAEDACHDLDGKTMDGSSMRVV- 68
Query: 217 VEYA 220
VE A
Sbjct: 69 VEMA 72
>gi|255557727|ref|XP_002519893.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
gi|223540939|gb|EEF42497.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
Length = 264
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 78/175 (44%), Gaps = 24/175 (13%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG++ +++K + F+ ++ RDAEDAIRG D
Sbjct: 7 RTIYVGNLPSDIREWEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENTRDAEDAIRGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERG----------IRRPGGGSSARRPSTNTRPSKTLFVINFD 159
F G RLRVE RG GGGS + +R S+ ++
Sbjct: 67 GYNF--DGCRLRVELAHGGRGQSSSDRRGGYGGSGGGGSGSGGRYCISRHSEFRVIVRGL 124
Query: 160 PYHTRTRDLERHFEPYGKIISVRIRRN----FAFVQYEVQED---ATRALDATNM 207
P +DL+ H G + + R+ F V Y ED A R LD T
Sbjct: 125 PSSASWQDLKDHMRKAGDVCFAEVSRDSDGTFGIVDYTNYEDMKYAIRKLDDTEF 179
>gi|222631305|gb|EEE63437.1| hypothetical protein OsJ_18250 [Oryza sativa Japonica Group]
Length = 305
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 72/159 (45%), Gaps = 14/159 (8%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG++ +D+K G+AF+ +D RDA+DAI G
Sbjct: 7 RTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAQDAIYG-- 64
Query: 110 RTEFGRKGRRLRVEWTKHERG--IRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRD 167
R + G RLRVE RG R SSA R R + V P +D
Sbjct: 65 RHGYDFDGHRLRVELAHGGRGPSFDRSSSYSSAGRRGAAKRTDYRVMVTGL-PSSASWQD 123
Query: 168 LERHFEPYGKIISVRIRR----NFAFVQYEVQEDATRAL 202
L+ H G + + R V Y ED +A+
Sbjct: 124 LKDHMRRAGDVCFSDVYREGGATIGIVDYTNYEDMKQAI 162
>gi|328870525|gb|EGG18899.1| SAP DNA-binding domain-containing protein [Dictyostelium
fasciculatum]
Length = 927
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 78/197 (39%), Gaps = 31/197 (15%)
Query: 37 GFRRSHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-------- 88
G + + L+I +F GN + + L ++F +YG+ DRV +
Sbjct: 324 GTKLKNCTLNIIDMPIQDTLLFVGNLGPEMTKDSLRKMFEKYGEPDRVILMKNRRTGESK 383
Query: 89 GFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPST-NT 147
G+ F+ A A L T GR LRV+W A ST +
Sbjct: 384 GYGFVDYRTRLQANAAKASLGSTTVS--GRVLRVDW---------------AETCSTLES 426
Query: 148 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-----RNFAFVQYEVQEDATRAL 202
SKT+FV + L + F P+GKI I + FAF+ YE EDA +A
Sbjct: 427 MHSKTIFVDKLQKQYVDVAILTKLFSPFGKIKECSIPLAGQPKGFAFIDYESVEDAEKAQ 486
Query: 203 DATNMSKLTDRVISVEY 219
N +L + I V +
Sbjct: 487 KTMNDKELQEYKIRVSF 503
>gi|255648057|gb|ACU24484.1| unknown [Glycine max]
Length = 267
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 76/170 (44%), Gaps = 23/170 (13%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+S++E LF +YG++ +++K + F+ D+ RDAEDAIRG D
Sbjct: 7 RTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKVPPRPPCYCFVEFDNARDAEDAIRGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERG---------IRRPGGGSSARRPSTNTRPSKTLFVINFDP 160
F G RLRVE RG G G + +R S+ ++ P
Sbjct: 67 GYNF--DGCRLRVELAHGGRGPSSSDRRGYGGGGGNGGAGGGRFGISRHSEFRVIVRGLP 124
Query: 161 YHTRTRDLERHFEPYGKIISVRIRRN----FAFVQYEVQED---ATRALD 203
+DL+ H G + + R+ F V Y +D A R LD
Sbjct: 125 SSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLD 174
>gi|147855944|emb|CAN80749.1| hypothetical protein VITISV_040486 [Vitis vinifera]
Length = 282
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 82/180 (45%), Gaps = 25/180 (13%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R ++ GN D R+ ++E LF +YG + +D+K G+AF+ +D RDAEDAI G D
Sbjct: 7 RTVYVGNLPGDIREREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDARDAEDAIYGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN---TRPSKTLFVINFDPYHTRTR 166
F G RLRVE RG S+ S+ +R S+ ++ PY +
Sbjct: 67 GYNF--DGHRLRVELAHGGRGQSSSVDHYSSYSSSSRGGLSRHSEYRVLVTGLPYSASWQ 124
Query: 167 DLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDD 226
DL+ H G + ++ R + T +D TN + +YA+R DD
Sbjct: 125 DLKDHMRRAGDVCFSQVFRG--------RGGMTGIVDYTNYDDM-------KYAIRKLDD 169
>gi|297743877|emb|CBI36847.3| unnamed protein product [Vitis vinifera]
Length = 264
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R ++ GN D R+ ++E LF +YG + +D+K G+AF+ ++ RDAEDAIRG D
Sbjct: 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEESRDAEDAIRGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERG 130
+F G RLRVE RG
Sbjct: 67 GYDF--DGHRLRVELAHGGRG 85
>gi|341888855|gb|EGT44790.1| CBN-RSP-2 protein [Caenorhabditis brenneri]
gi|341896980|gb|EGT52915.1| hypothetical protein CAEBREN_32319 [Caenorhabditis brenneri]
Length = 283
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 80/183 (43%), Gaps = 21/183 (11%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M ++ G A D+E FR YGK+ V MK+GF F+ D+RDA+DA+ L+ +
Sbjct: 1 MVRVYIGRLPNRATDRDVEHFFRGYGKLVDVIMKNGFGFVDFQDQRDADDAVHDLNGKDL 60
Query: 114 GRKGRRLRVEWTKHERGI--RRPGGGSSARRPSTN-----------TRPSKTLFVINFDP 160
G R+ +E+ + + G R G G R P+ +RP T F + D
Sbjct: 61 C--GERVILEFPRRKVGYNEERSGSGYRGREPTFRRGGERQFSNRYSRPCSTRFRLVIDN 118
Query: 161 YHTR--TRDLERHFEPYGK--IISVRIRRNF--AFVQYEVQEDATRALDATNMSKLTDRV 214
TR +D++ H G S +RN A V + +D A++ +L R
Sbjct: 119 LSTRFSWQDIKDHIRKLGIEPTYSEAHKRNVNQALVCFSTHDDLREAMNKLQGEELNGRK 178
Query: 215 ISV 217
+
Sbjct: 179 LKC 181
>gi|50540286|ref|NP_001002610.1| splicing factor, arginine/serine-rich 5 [Danio rerio]
gi|49900455|gb|AAH75982.1| Splicing factor, arginine/serine-rich 5b [Danio rerio]
Length = 285
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 36/57 (63%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
IF G AR+ D+ER F+ YG++ +D+K GF F+ DD RDAEDA+ LD E
Sbjct: 6 IFIGRLNPSAREKDVERFFKGYGRIRDIDLKRGFGFVEFDDPRDAEDAVYELDGKEL 62
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 153 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTD 212
+F+ +P R +D+ER F+ YG+I + ++R F FV+++ DA A+ + +L +
Sbjct: 6 IFIGRLNP-SAREKDVERFFKGYGRIRDIDLKRGFGFVEFDDPRDAEDAVYELDGKELCN 64
Query: 213 RVISVEYA 220
+++E+A
Sbjct: 65 ERVTIEHA 72
>gi|359490737|ref|XP_003634148.1| PREDICTED: pre-mRNA-splicing factor SF2-like isoform 1 [Vitis
vinifera]
gi|359490739|ref|XP_003634149.1| PREDICTED: pre-mRNA-splicing factor SF2-like isoform 2 [Vitis
vinifera]
gi|302143975|emb|CBI23080.3| unnamed protein product [Vitis vinifera]
Length = 250
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 72/170 (42%), Gaps = 19/170 (11%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG++ V++K + F+ ++ RDAEDAIRG D
Sbjct: 7 RTIYVGNLPSDIREYEIEDLFYKYGRILDVELKIPPRPPCYCFVEFENSRDAEDAIRGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRP-----SKTLFVINFDPYHTR 164
F G RLRVE RG R S+ ++ P
Sbjct: 67 GYNF--DGCRLRVELAHGGRGQSSSSDRRGGHGSGGGGRFGVSRHSEYRVIVRGLPSSAS 124
Query: 165 TRDLERHFEPYGKIISVRIRRN----FAFVQYEVQED---ATRALDATNM 207
+DL+ H G + + R+ F V Y ED A R LD T
Sbjct: 125 WQDLKDHMRKAGDVCFAEVSRDADGTFGLVDYTNHEDMKYAIRKLDDTEF 174
>gi|225437350|ref|XP_002265998.1| PREDICTED: pre-mRNA-splicing factor SF2-like isoform 1 [Vitis
vinifera]
gi|359480272|ref|XP_003632425.1| PREDICTED: pre-mRNA-splicing factor SF2-like isoform 2 [Vitis
vinifera]
Length = 296
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R ++ GN D R+ ++E LF +YG + +D+K G+AF+ ++ RDAEDAIRG D
Sbjct: 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEESRDAEDAIRGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERG 130
+F G RLRVE RG
Sbjct: 67 GYDF--DGHRLRVELAHGGRG 85
>gi|66814778|ref|XP_641568.1| SAP DNA-binding domain-containing protein [Dictyostelium discoideum
AX4]
gi|60469605|gb|EAL67594.1| SAP DNA-binding domain-containing protein [Dictyostelium discoideum
AX4]
Length = 1009
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 75/191 (39%), Gaps = 31/191 (16%)
Query: 45 LSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMD 96
LSI +F GN D + L+++F ++G +DR+ + G+AFI
Sbjct: 390 LSITDIPLADSLLFVGNLGNDVGKEQLKKMFEKHGTIDRIILIKNRRTGENKGYAFIDYR 449
Query: 97 DERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVI 156
+ A A L F R R LRV+W ++ + + SKT+FV
Sbjct: 450 TKLQASTAKSSLGSIVFNR--RTLRVDWAENCNTME--------------SMHSKTIFVD 493
Query: 157 NFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSK 209
L + F P+GKI + R FAF+ Y EDA +A N
Sbjct: 494 RLPRSFADVPILRKVFSPFGKIKDCNVVPNYYGQPRGFAFIDYNNVEDAEKAQRMMNEKD 553
Query: 210 LTDRVISVEYA 220
L I V +A
Sbjct: 554 LKGYKIRVNFA 564
>gi|296478432|tpg|DAA20547.1| TPA: neurofilament, heavy polypeptide 200kDa-like isoform 1 [Bos
taurus]
Length = 1081
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 103/239 (43%), Gaps = 50/239 (20%)
Query: 229 NGHSPDRNRDRSPDRGR--------RRSPSPYRRERGSPDYGRG--SSRSPYRRERGSPD 278
SP + +SP++ + ++ SP + E SP+ + ++SP + E SP+
Sbjct: 546 KAKSPVKEEAKSPEKAKSPVEAKSPEKAKSPMKEEAKSPEKVKSPVEAKSPEKEEAKSPE 605
Query: 279 YGRV--RSPSPYRRDRGSPDYGRN--SSRSPYKKERAAIGHGRGP--------SRSPYRR 326
+ ++ SP + + SP+ ++ ++SP K+E + + P ++SP +
Sbjct: 606 KAKSPEKAKSPVKEEAKSPEKAKSPVEAKSPVKEEAKSPEKAKSPVEAKSPEKAKSPVKE 665
Query: 327 DRGSPENGHGSSPSPYRKGKPSPNNGRGP----------SRSPYERERPSPENGRG---- 372
+ SPE SP ++ SP + P ++SP + E SPE +
Sbjct: 666 EAKSPEKAK----SPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKE 721
Query: 373 ------GSRSPYRRERPSPDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRSPPAED 425
++SP + E SP+ + P PE SP + A SP +++SP E+
Sbjct: 722 EAKSPEKAKSPVKEEAKSPEKAKSPVEAKSPEKAKSPAKEEAKSP----EKAKSPVKEE 776
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 86/196 (43%), Gaps = 32/196 (16%)
Query: 229 NGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSPY 288
SP + +SP++ + SP + E SP+ + SP + E SP+ + SP
Sbjct: 658 KAKSPVKEEAKSPEKAK----SPVKEEAKSPEKAK----SPVKEEAKSPEKAK----SPV 705
Query: 289 RRDRGSPDYGRNSSRSPYKKERAAIGHGRGP--SRSPYRRDRGSPENGHG--SSPSPYRK 344
+ + SP+ +SP K+E + P ++SP + + SPE + SP +
Sbjct: 706 KEEAKSPEKA----KSPVKEE------AKSPEKAKSPVKEEAKSPEKAKSPVEAKSPEKA 755
Query: 345 GKPSPNNGRGP--SRSPYERERPSPENGRGGSRSPYRRERPSPDNGRVPSPNSMPEPRDS 402
P+ + P ++SP + E SPE +SP + E SP+ + P+ P +
Sbjct: 756 KSPAKEEAKSPEKAKSPVKEEAKSPEKA----KSPVKEEAKSPEKAKSPAKEEAKSPEKA 811
Query: 403 PGYDGADSPINERYRS 418
+ SP+ E +S
Sbjct: 812 KSPEKPKSPVKEEAKS 827
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 84/198 (42%), Gaps = 36/198 (18%)
Query: 229 NGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSPY 288
SP + +SP++ + SP + E SP+ + SP + E SP+ + SP
Sbjct: 672 KAKSPVKEEAKSPEKAK----SPVKEEAKSPEKAK----SPVKEEAKSPEKAK----SPV 719
Query: 289 RRDRGSPDYGRNSSRSPYKKERAAIGHGRGP--------SRSPYRRDRGSPENGHGSSPS 340
+ + SP+ + SP K+E + + P ++SP + + SPE S
Sbjct: 720 KEEAKSPEKAK----SPVKEEAKSPEKAKSPVEAKSPEKAKSPAKEEAKSPEKAK----S 771
Query: 341 PYRKGKPSPNNGRGPSRSPYERERPSPENGRGGSRSPYRRERPSPDNGRVPSPNSMPEPR 400
P ++ SP +SP + E SPE +SP + E SP+ + P P
Sbjct: 772 PVKEEAKSPEKA----KSPVKEEAKSPEKA----KSPAKEEAKSPEKAKSPEKPKSPVKE 823
Query: 401 DSPGYDGADSPINERYRS 418
++ + SP+ E +S
Sbjct: 824 EAKSPEKPKSPVKEEAKS 841
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 32/196 (16%)
Query: 229 NGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSPY 288
SP + +SP++ + SP + E SP+ + SP + E SP+ + SP
Sbjct: 686 KAKSPVKEEAKSPEKAK----SPVKEEAKSPEKAK----SPVKEEAKSPEKAK----SPV 733
Query: 289 RRDRGSPDYGRN--SSRSPYKKERAAIGHGRGP--SRSPYRRDRGSPENGHGSSPSPYRK 344
+ + SP+ ++ ++SP K + A + P ++SP + + SPE SP ++
Sbjct: 734 KEEAKSPEKAKSPVEAKSPEKAKSPAKEEAKSPEKAKSPVKEEAKSPEKAK----SPVKE 789
Query: 345 GKPSPNNGRGPSRSPYERERPSPENGRGGSR--SPYRRERPSPDNGRVPSPNSMPEPRDS 402
SP + P++ E SPE + + SP + E SP+ + P + E S
Sbjct: 790 EAKSPEKAKSPAK----EEAKSPEKAKSPEKPKSPVKEEAKSPEKPKSP----VKEEAKS 841
Query: 403 PGYDGADSPINERYRS 418
P + SP+ E +S
Sbjct: 842 P--EKPKSPVKEEAKS 855
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 96/218 (44%), Gaps = 42/218 (19%)
Query: 229 NGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGR----VRS 284
SP + +SP++ + SP + E SP+ + SP + E SP+ + +S
Sbjct: 700 KAKSPVKEEAKSPEKAK----SPVKEEAKSPEKAK----SPVKEEAKSPEKAKSPVEAKS 751
Query: 285 P----SPYRRDRGSPDYGRN----SSRSPYKKERAAIGHGRGP--SRSPYRRDRGSPENG 334
P SP + + SP+ ++ ++SP K + + P ++SP + + SPE
Sbjct: 752 PEKAKSPAKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPAKEEAKSPEKA 811
Query: 335 HGSSP----SPYRKGKPSPNNGRGPSRSPYERERPSPENGRGGSRSPYRRERPSPDNGRV 390
SP SP ++ SP +SP + E SPE +SP + E SP+ +
Sbjct: 812 K--SPEKPKSPVKEEAKSPEK----PKSPVKEEAKSPEK----PKSPVKEEAKSPEKAKS 861
Query: 391 PSPNSMPEP-RDSPGYDGADSPINE-----RYRSRSPP 422
P + P ++ P + A SP+ E R++ PP
Sbjct: 862 PVKDEAKAPGKEVPKKEEAKSPVKEEEKPQEVRAKEPP 899
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 96/222 (43%), Gaps = 42/222 (18%)
Query: 229 NGHSPDRNRDRSPDRGR--RRSPSPYRRERGSPDYGRGSS----RSPYRR----ERGSPD 278
SP++ +SP + ++ SP + E SP S +SP + E SP+
Sbjct: 486 EAASPEKEEAKSPAEAKSPEKAKSPVKEEAKSPQKEEAKSPAEVKSPEKAKSPVEAKSPE 545
Query: 279 YGRVRSPSPYRRDRGSPDYGRN--------SSRSPYKKERAAIGHGRGP--SRSPYRRDR 328
+ SP + + SP+ ++ ++SP K+E + + P ++SP + +
Sbjct: 546 KAK----SPVKEEAKSPEKAKSPVEAKSPEKAKSPMKEEAKSPEKVKSPVEAKSPEKEEA 601
Query: 329 GSPENGHG--SSPSPYRKGKPSPNNGRGP--SRSPYERERPSPENGRG--------GSRS 376
SPE + SP ++ SP + P ++SP + E SPE + ++S
Sbjct: 602 KSPEKAKSPEKAKSPVKEEAKSPEKAKSPVEAKSPVKEEAKSPEKAKSPVEAKSPEKAKS 661
Query: 377 PYRRERPSPDNGRVPSPNSMPEPRDSPGYDGADSPINERYRS 418
P + E SP+ + P + E SP + A SP+ E +S
Sbjct: 662 PVKEEAKSPEKAKSP----VKEEAKSP--EKAKSPVKEEAKS 697
>gi|56270156|gb|AAH87121.1| Splicing factor, arginine/serine-rich 6 [Rattus norvegicus]
Length = 339
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 88/183 (48%), Gaps = 25/183 (13%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y+ R+ D++R F YG++ +D+K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNSKELC-- 61
Query: 117 GRRLRVEWTKHERGIRR---------PGGGSSARRPSTNTR-----PSKTLFVINFDPYH 162
G R+ VE H RG RR GG T+ R P +T + + +
Sbjct: 62 GERVIVE---HARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLS 118
Query: 163 TRT--RDLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI-S 216
+R +DL+ G++ + + R N +++ D RALD + +++ R I
Sbjct: 119 SRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRL 178
Query: 217 VEY 219
+EY
Sbjct: 179 IEY 181
>gi|224128490|ref|XP_002320345.1| predicted protein [Populus trichocarpa]
gi|222861118|gb|EEE98660.1| predicted protein [Populus trichocarpa]
Length = 168
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R ++ GN D R+ ++E LF +YG + +D+K G+AF+ ++ RDAEDAIRG D
Sbjct: 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERG 130
+F G RLRVE RG
Sbjct: 67 GYDF--DGHRLRVELAHGGRG 85
>gi|348510431|ref|XP_003442749.1| PREDICTED: serine/arginine-rich splicing factor 4-like [Oreochromis
niloticus]
Length = 342
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y R+ D++R F YGK+ +D+K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 4 VYVGKLSYHVREKDIQRFFSGYGKLLEIDLKNGYGFVEFEDMRDADDAVYELNGKELC-- 61
Query: 117 GRRLRVEWTKHERGIRR 133
G R+ +E H RG RR
Sbjct: 62 GERVVIE---HARGPRR 75
>gi|341892188|gb|EGT48123.1| CBN-RSP-5 protein [Caenorhabditis brenneri]
gi|341901487|gb|EGT57422.1| hypothetical protein CAEBREN_20510 [Caenorhabditis brenneri]
Length = 204
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y+AR+ D+ER + YG++ + MK GFAF+ +D RDAEDA LD
Sbjct: 4 LYLGKIPYNARERDIERFLKGYGRITNISMKYGFAFVDFEDSRDAEDACHDLDGRTMDGS 63
Query: 117 GRRLRVEWTKHE-RGIRRPGGG 137
R+ V+ + RG GGG
Sbjct: 64 SMRVVVQMARGRPRGSDARGGG 85
>gi|225713170|gb|ACO12431.1| Splicing factor, arginine/serine-rich 4 [Lepeophtheirus salmonis]
Length = 129
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ GN D R+ D+E+ F+ YGK+ V +K+G+ F+ +D RDA+DA++ LD +
Sbjct: 8 LYLGNISDDTRERDVEKFFKGYGKLREVALKNGYGFVEFEDHRDADDAVQDLDGKDMN-- 65
Query: 117 GRRLRVEWTK 126
G R+RVE+ +
Sbjct: 66 GSRVRVEFAR 75
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 163 TRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
TR RD+E+ F+ YGK+ V ++ + FV++E DA A+ + + + VE+A
Sbjct: 17 TRERDVEKFFKGYGKLREVALKNGYGFVEFEDHRDADDAVQDLDGKDMNGSRVRVEFA 74
>gi|332027470|gb|EGI67553.1| Splicing factor, arginine/serine-rich 1 [Acromyrmex echinatior]
Length = 248
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 96/208 (46%), Gaps = 27/208 (12%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG----FAFIYMDDERDAEDAIRGLDRTE 112
I+ GN D R D++ LF ++GKV VD+K+ FAF+ DD RDAEDA+ D +
Sbjct: 11 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRRGPPFAFVEFDDPRDAEDAVHARDGYD 70
Query: 113 FGRKGRRLRVEW------TKHERGIRRPG-GGSSARRPSTNTRP-------SKTLFVINF 158
+ G RLRVE+ + + RG R G G R +N+R S+ +++
Sbjct: 71 Y--DGYRLRVEFPRGGGPSNNFRGGRGAGDSGRGGRGEMSNSRGRGPPARRSQYRVLVSG 128
Query: 159 DPYHTRTRDLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKLTDRVISV 217
P +DL+ H G + + ++ V++ +D A+ + S+ V
Sbjct: 129 LPPSGSWQDLKDHMREAGDVCFADVYKDGTGVVEFLRHDDMKYAVKKLDDSRFRSHEGEV 188
Query: 218 EYAVRDDDDRRNGHSPDRNRDRSPDRGR 245
Y +R +D G +R RS DR R
Sbjct: 189 AY-IRVKEDHSGG-----DRGRSEDRER 210
>gi|62087532|dbj|BAD92213.1| arginine/serine-rich splicing factor 6 variant [Homo sapiens]
Length = 279
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 32 RLYVLGFRRSHSQLSIAAFEAMMRP-IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGF 90
R V G R + Q ++ + A P ++ G Y+ R+ D++R F YG++ VD+K+G+
Sbjct: 12 RTAVTGLRSAVRQPALGSPPATDMPRVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGY 71
Query: 91 AFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRR 133
F+ +D RDA+DA+ L+ E G R+ VE H RG RR
Sbjct: 72 GFVEFEDSRDADDAVYELNGKELC--GERVIVE---HARGPRR 109
>gi|403290688|ref|XP_003936440.1| PREDICTED: serine/arginine-rich splicing factor 6 [Saimiri
boliviensis boliviensis]
Length = 344
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 85/178 (47%), Gaps = 24/178 (13%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y+ R+ D++R F YG++ VD+K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELC-- 61
Query: 117 GRRLRVEWTKHERGIRR---------PGGGSSARRPSTNTR-----PSKTLFVINFDPYH 162
G R+ VE H RG RR GG T+ R P +T + + +
Sbjct: 62 GERVIVE---HARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLS 118
Query: 163 TRT--RDLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
+R +DL+ G++ + + R N +++ D RALD + +++ R I
Sbjct: 119 SRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNI 176
>gi|390462611|ref|XP_003732879.1| PREDICTED: LOW QUALITY PROTEIN: serine/arginine-rich splicing
factor 6-like [Callithrix jacchus]
Length = 344
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 85/178 (47%), Gaps = 24/178 (13%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y+ R+ D++R F YG++ VD+K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELC-- 61
Query: 117 GRRLRVEWTKHERGIRR---------PGGGSSARRPSTNTR-----PSKTLFVINFDPYH 162
G R+ VE H RG RR GG T+ R P +T + + +
Sbjct: 62 GERVIVE---HARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLS 118
Query: 163 TRT--RDLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
+R +DL+ G++ + + R N +++ D RALD + +++ R I
Sbjct: 119 SRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNI 176
>gi|356516144|ref|XP_003526756.1| PREDICTED: pre-mRNA-splicing factor SF2-like [Glycine max]
Length = 263
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 78/185 (42%), Gaps = 39/185 (21%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+S++E LF +YG++ +++K + F+ D+ RDAEDAIRG D
Sbjct: 7 RTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKVPPRPPCYCFVEFDNARDAEDAIRGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN--------------------TRP 149
F G RLRVE R G SS RR +R
Sbjct: 67 GYNF--DGCRLRVELAHGGR-----GPSSSDRRGYGGGGGGGGGGGGSGAGGGRFGISRH 119
Query: 150 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN----FAFVQYEVQED---ATRAL 202
S+ ++ P +DL+ H G + + R+ F V Y +D A R L
Sbjct: 120 SEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKL 179
Query: 203 DATNM 207
D T
Sbjct: 180 DDTEF 184
>gi|170588713|ref|XP_001899118.1| SF2 [Brugia malayi]
gi|158593331|gb|EDP31926.1| SF2, putative [Brugia malayi]
Length = 228
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 94/223 (42%), Gaps = 33/223 (14%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS----GFAFIYMDDERDAEDAIRGLDRTE 112
I+ GN R D+E +F +YG+V VD+K FAF+ +D RDAEDA+RG D +
Sbjct: 7 IYVGNLPTTVRAKDVEDIFSKYGRVLYVDLKDRRQPYFAFVEFEDARDAEDAVRGRDGYD 66
Query: 113 FGRKGRRLRVEWTKHERGIRRPGGG-SSARRPSTNTRPSKTL-----------FVINFDP 160
+ +G RLRVE+ + G S R S + +++ P
Sbjct: 67 Y--EGYRLRVEFPRGLGPRGPGGRPYDSGRNLSVSRSAGGGGSSSGSRRANYRVIVSGLP 124
Query: 161 YHTRTRDLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKLTDRVISVEY 219
+DL+ H G + + R+ V+Y ED AL + +K Y
Sbjct: 125 ASGSWQDLKDHMREAGDVCYTDVLRDGTGIVEYGRYEDMKYALRKLDDTKFKSHEGETSY 184
Query: 220 A-VRDDDDRRNGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDY 261
V++D NG S +R RSP R RGSP Y
Sbjct: 185 IRVKED----NGESRAHSRSRSP---------VGRASRGSPQY 214
>gi|327283237|ref|XP_003226348.1| PREDICTED: serine/arginine-rich splicing factor 6-like [Anolis
carolinensis]
Length = 343
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 82/176 (46%), Gaps = 22/176 (12%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y R+ DL+R F YG++ VD+K+G+ F+ +D RDAEDA+ L+ +
Sbjct: 4 VYIGRLSYHVREKDLQRFFSGYGRLLEVDLKNGYGFVEFEDSRDAEDAVYELNGKDLC-- 61
Query: 117 GRRLRVEWTKHERGIRR-------PGGGSSARRPSTNTR-----PSKTLFVINFDPYHTR 164
G R+ VE H RG RR T+ R P +T + + + +R
Sbjct: 62 GERVIVE---HARGPRRDRDGYSYSSRSGGYSSRRTSGRDKYGPPVRTEYRLIVENLSSR 118
Query: 165 T--RDLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
+DL+ G++ + + R N +++ D RALD + +++ R I
Sbjct: 119 CSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRKI 174
>gi|156394189|ref|XP_001636709.1| predicted protein [Nematostella vectensis]
gi|156223814|gb|EDO44646.1| predicted protein [Nematostella vectensis]
Length = 223
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 74/161 (45%), Gaps = 26/161 (16%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS------GFAFIYMDDERDAEDAIRGLDR 110
++ GN D R+ DL +F +YG + VD+K+ FAF+ +D RDAEDA++G D
Sbjct: 11 VYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAGPPFAFVEFEDPRDAEDAVKGRDG 70
Query: 111 TEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLER 170
EF G R+RVE+ R G G RR + S P +DL+
Sbjct: 71 HEF--DGYRIRVEFP-------RGGSGPPPRRSDFRVQVSGL-------PPTGSWQDLKD 114
Query: 171 HFEPYGKIISVRIRRN----FAFVQYEVQEDATRALDATNM 207
H G ++ + ++ F +Y+ + A R LD +
Sbjct: 115 HMREAGDVLFTDVFKDGTGVVEFARYDDMKFAIRNLDDSKF 155
>gi|159479816|ref|XP_001697982.1| SR protein factor [Chlamydomonas reinhardtii]
gi|158273781|gb|EDO99567.1| SR protein factor [Chlamydomonas reinhardtii]
Length = 320
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 83/176 (47%), Gaps = 29/176 (16%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
IF GN YD R+ +L+ +F ++G++ +D+K GFAF+ +D R AE+A R +
Sbjct: 37 IFVGNLPYDVREKELDEIFYKFGRIRMIDIKKPARPPGFAFVEFEDPRSAEEAARRRNNY 96
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPS-TNTRPSKT-----LFVINFDPYHTRT 165
EF G R+RVE I R G + A++P RP + L+V N P
Sbjct: 97 EFA--GMRMRVE-------IARGGEAAGAQQPLRIGYRPIRNTMGFRLYVKNL-PRSASW 146
Query: 166 RDLERHFEPYGKIISVRIRRN-----FAFVQYEVQED---ATRALDATNMSKLTDR 213
+DL+ K + + ++ V++E +ED R LD T + D+
Sbjct: 147 QDLKDFVRRVCKPLYTEVFKDNRDNVVGVVEFESKEDMKATVRKLDDTEFANPFDK 202
>gi|432864638|ref|XP_004070386.1| PREDICTED: uncharacterized protein LOC101162527 isoform 2 [Oryzias
latipes]
Length = 373
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y R+ D++R F YGK+ VDMK+G+ F+ +D RDA+DA+ L+ E
Sbjct: 4 VYIGRLSYHVREKDIQRFFSGYGKLLEVDMKNGYGFVEFEDNRDADDAVYELNGKELC-- 61
Query: 117 GRRLRVEWTKHERGIRR 133
G R+ VE H RG RR
Sbjct: 62 GERVIVE---HARGPRR 75
>gi|432864636|ref|XP_004070385.1| PREDICTED: uncharacterized protein LOC101162527 isoform 1 [Oryzias
latipes]
Length = 367
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y R+ D++R F YGK+ VDMK+G+ F+ +D RDA+DA+ L+ E
Sbjct: 4 VYIGRLSYHVREKDIQRFFSGYGKLLEVDMKNGYGFVEFEDNRDADDAVYELNGKELC-- 61
Query: 117 GRRLRVEWTKHERGIRR 133
G R+ VE H RG RR
Sbjct: 62 GERVIVE---HARGPRR 75
>gi|357464169|ref|XP_003602366.1| RNA-binding protein [Medicago truncatula]
gi|355491414|gb|AES72617.1| RNA-binding protein [Medicago truncatula]
Length = 273
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+S++E LF +YG++ +++K + F+ D+ RDAEDAIRG D
Sbjct: 7 RTIYVGNLPADIRESEIEDLFYKYGRIMEIELKVPPRPPCYCFVEFDNARDAEDAIRGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERG 130
F G RLRVE RG
Sbjct: 67 GYNF--DGCRLRVELAHGGRG 85
>gi|357464167|ref|XP_003602365.1| RNA-binding protein [Medicago truncatula]
gi|355491413|gb|AES72616.1| RNA-binding protein [Medicago truncatula]
Length = 272
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+S++E LF +YG++ +++K + F+ D+ RDAEDAIRG D
Sbjct: 7 RTIYVGNLPADIRESEIEDLFYKYGRIMEIELKVPPRPPCYCFVEFDNARDAEDAIRGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERG 130
F G RLRVE RG
Sbjct: 67 GYNF--DGCRLRVELAHGGRG 85
>gi|125543223|gb|EAY89362.1| hypothetical protein OsI_10866 [Oryza sativa Indica Group]
Length = 324
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 86/195 (44%), Gaps = 30/195 (15%)
Query: 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI--------RRNFAFVQYEVQEDATR 200
P L+V T RDLE+HF G++I I R F FV ++A
Sbjct: 18 PGNNLYVTGLSARVT-DRDLEKHFSAEGEVIDASIVLDPWTRESRGFGFVTMATVKEADL 76
Query: 201 ALDATNMSKLTDRVISVEYAVRDDDDRRNGHSPDRNR-----DRSPDRGRRRSPS--PYR 253
+ + S L RVI+VE A RR G +P R RR SPS P
Sbjct: 77 CIKYLDRSVLEGRVITVEKA-----KRRRGRTPTPGRYLGTKSSCVTPARRYSPSYSPVE 131
Query: 254 RERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAI 313
R+R S Y SP RER YGR RS SPY R R Y R S SP+++ R+
Sbjct: 132 RDRYSSRY------SP-ERERSYSPYGRRRSYSPYNRRRSYSPYERRRSYSPHERRRSYS 184
Query: 314 GHGRGPSRSPYRRDR 328
+GR P SPY R R
Sbjct: 185 PYGRSP--SPYGRRR 197
>gi|147853033|emb|CAN81258.1| hypothetical protein VITISV_000965 [Vitis vinifera]
Length = 720
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R ++ GN D R+ ++E LF +YG + +D+K G+AF+ ++ RDAEDAIRG D
Sbjct: 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEESRDAEDAIRGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERG 130
+F G RLRVE RG
Sbjct: 67 GYDF--DGHRLRVELAHGGRG 85
>gi|402587972|gb|EJW81906.1| splicing factor [Wuchereria bancrofti]
Length = 228
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 96/223 (43%), Gaps = 33/223 (14%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS----GFAFIYMDDERDAEDAIRGLDRTE 112
I+ GN R D+E +F +YG+V VD+K FAF+ +D RDAEDA+RG D +
Sbjct: 7 IYVGNLPTTVRAKDVEDIFSKYGRVLYVDLKDRRQPYFAFVEFEDARDAEDAVRGRDGYD 66
Query: 113 FGRKGRRLRVEWTKHERGIRRPGGG-SSARRPST-----------NTRPSKTLFVINFDP 160
+ +G RLRVE+ + G S R S +R + +++ P
Sbjct: 67 Y--EGYRLRVEFPRGLGPRGPGGRPYDSGRNLSVSRSACGGGSSSGSRRASYRVIVSGLP 124
Query: 161 YHTRTRDLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKLTDRVISVEY 219
+DL+ H G + + R+ V+Y ED AL + +K Y
Sbjct: 125 ASGSWQDLKDHMREAGDVCYTDVLRDGTGIVEYGRYEDMKYALRKLDDTKFKSHEGETSY 184
Query: 220 A-VRDDDDRRNGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDY 261
V++D NG S +R RSP R RGSP Y
Sbjct: 185 IRVKED----NGESRAHSRSRSP---------VGRASRGSPQY 214
>gi|357464165|ref|XP_003602364.1| RNA-binding protein [Medicago truncatula]
gi|355491412|gb|AES72615.1| RNA-binding protein [Medicago truncatula]
Length = 380
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 55/103 (53%), Gaps = 12/103 (11%)
Query: 38 FRRSHSQLSIAAFEAMM-----RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---- 88
F+ L++ ++ M R I+ GN D R+S++E LF +YG++ +++K
Sbjct: 92 FKDCSLGLTVQFLQSNMSSRFSRTIYVGNLPADIRESEIEDLFYKYGRIMEIELKVPPRP 151
Query: 89 -GFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERG 130
+ F+ D+ RDAEDAIRG D F G RLRVE RG
Sbjct: 152 PCYCFVEFDNARDAEDAIRGRDGYNF--DGCRLRVELAHGGRG 192
>gi|281206481|gb|EFA80667.1| hypothetical protein PPL_06250 [Polysphondylium pallidum PN500]
Length = 931
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 15/155 (9%)
Query: 70 DLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 129
DL LF +YGK+ K GF F+ A DAI L T G+++ ++++ +R
Sbjct: 73 DLYELFIKYGKITNHAWKIGFGFVEYQSVNQALDAISQLQSTMV--MGKKIFIDFSSSKR 130
Query: 130 GIRRPGGGSSARRP-STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI--RRN 186
R P ST P IN+D T DL+ F G+II ++
Sbjct: 131 ----------ERHPMSTIITPKAPRVYINYDNESTHPNDLKALFSSVGEIIHNHFVDKKG 180
Query: 187 FAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
+ FV+Y E+A RA+ + ++ +R + V YA
Sbjct: 181 YGFVEYATVEEAERAISQYHGYEIHNRKLLVNYAT 215
>gi|296481070|tpg|DAA23185.1| TPA: splicing factor, arginine/serine-rich 6 [Bos taurus]
Length = 345
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 86/180 (47%), Gaps = 24/180 (13%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y+ R+ D++R F YG++ +D+K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELC-- 61
Query: 117 GRRLRVEWTKHERGIRR---------PGGGSSARRPSTNTR-----PSKTLFVINFDPYH 162
G R+ VE H RG RR GG T+ R P +T F + +
Sbjct: 62 GERVIVE---HARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEFRLIVENLS 118
Query: 163 TRT--RDLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
+R +DL+ G++ + + R N +++ D RALD + +++ R I +
Sbjct: 119 SRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRL 178
Score = 44.7 bits (104), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 161 YHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
Y+ R +D++R F YG+++ + ++ + FV++E DA A+ N +L + VE+A
Sbjct: 11 YNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHA 70
>gi|324500331|gb|ADY40159.1| Splicing factor, arginine/serine-rich 3 [Ascaris suum]
Length = 244
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG----FAFIYMDDERDAEDAIRGLDRTE 112
I+ GN D +Q DLE LF +YG+++ +D+K FAFI DD RDA DA+ G R
Sbjct: 9 IYIGNLPSDVKQRDLEDLFYKYGRINYIDIKLSRGAPFAFIEFDDPRDARDAVHG--RDG 66
Query: 113 FGRKGRRLRVEWT 125
+ G R+RVE T
Sbjct: 67 YDMDGCRIRVEMT 79
>gi|291407986|ref|XP_002720309.1| PREDICTED: splicing factor, arginine/serine-rich 1 [Oryctolagus
cuniculus]
Length = 343
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 81/160 (50%), Gaps = 9/160 (5%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG-----FAFIYMDDERDAEDAIRGLDRT 111
I+ GN D +++ +F +YG V VD+K+ FAF+ + RDA +A+ G D
Sbjct: 17 IYVGNLPPDIGTREVKDMFYKYGTVRDVDLKNRRWGRPFAFVEFNSPRDAHNAVHGRDGY 76
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERH 171
++ +G RLRVE+ ++ R I G G R +++ R + V P + +DL+ H
Sbjct: 77 DY--EGYRLRVEFPRNYRAIYGGGRGLLETRGTSSRRSDNRVLVSGLPPSGS-WQDLKDH 133
Query: 172 FEPYGKIISVRIRRNFA-FVQYEVQEDATRALDATNMSKL 210
G + +RR+ + V++ +ED + A+ N +K
Sbjct: 134 MREAGYVCYAAVRRDGSGVVEFVWKEDMSYAVRKLNNTKF 173
>gi|320038617|gb|EFW20552.1| pre-RNA splicing factor Srp2 [Coccidioides posadasii str. Silveira]
gi|392870837|gb|EJB12074.1| pre-RNA splicing factor Srp2 [Coccidioides immitis RS]
Length = 302
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 95/226 (42%), Gaps = 32/226 (14%)
Query: 57 IFCGNFEYDARQSDLERLFRRYG--KVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFG 114
++ GN + + D+E F ++G K+ + + SGF FI +D DA D + T+F
Sbjct: 9 LYLGNLPRNVTKQDVEEHFNQHGSGKITDIKLMSGFGFIEYEDALDARDVVPAYHGTDF- 67
Query: 115 RKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPY-HTRTRDLERHFE 173
KG RL V++ RG R S S RP +T + + T +DL+
Sbjct: 68 -KGSRLTVQFA---RGPRHKETFSGPSDRSNAPRPRRTPYRMQISGLPETSWQDLKDFAR 123
Query: 174 PYGKII----SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDD--- 226
G + ++R FV++E D A++ + + ++ ++ DD
Sbjct: 124 QSGLDVVYSETLRDHEGRGFVEFETGADLKTAIEKLDGREFKGSRVTCTQDIQAPDDRPV 183
Query: 227 ----------RRNGHSPDRNRDRSPDRG-------RRRSPSPYRRE 255
RR G+ P + DR P RG R RSP P RR+
Sbjct: 184 RDPYRSRSPVRRGGYPPMDDYDRRPPRGYSPRGHYRERSPPPMRRD 229
>gi|363807302|ref|NP_001242110.1| uncharacterized protein LOC100786491 [Glycine max]
gi|255636783|gb|ACU18725.1| unknown [Glycine max]
Length = 267
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 76/174 (43%), Gaps = 23/174 (13%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+S++E LF +YG++ +++K + F+ D+ RDAEDAIRG D
Sbjct: 7 RTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKVPPRPPCYCFVEFDNARDAEDAIRGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERG---------IRRPGGGSSARRPSTNTRPSKTLFVINFDP 160
F G RLRVE RG G G + +R S+ ++ P
Sbjct: 67 GYNF--DGCRLRVELAHGGRGPSSSDRRGYGGGGGNGGAGGGRFGISRHSEFRVIVRGLP 124
Query: 161 YHTRTRDLERHFEPYGKIISVRIRRN----FAFVQYEVQED---ATRALDATNM 207
+DL+ H G + + R+ V Y +D A R LD T
Sbjct: 125 SSASWQDLKDHMRKAGDVCFAEVSRDSEGTLGIVDYTNYDDMKYAIRKLDDTEF 178
>gi|116175261|ref|NP_001070685.1| serine/arginine-rich splicing factor 6 [Sus scrofa]
gi|115371751|gb|ABI96200.1| SFRS6 [Sus scrofa]
Length = 345
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 85/178 (47%), Gaps = 24/178 (13%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y+ R+ D++R F YG++ +D+K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELC-- 61
Query: 117 GRRLRVEWTKHERGIRR---------PGGGSSARRPSTNTR-----PSKTLFVINFDPYH 162
G R+ VE H RG RR GG T+ R P +T F + +
Sbjct: 62 GERVIVE---HARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEFRLIVENLS 118
Query: 163 TRT--RDLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
+R +DL+ G++ + + R N +++ D RALD + +++ R I
Sbjct: 119 SRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNI 176
Score = 44.7 bits (104), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 161 YHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
Y+ R +D++R F YG+++ + ++ + FV++E DA A+ N +L + VE+A
Sbjct: 11 YNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHA 70
>gi|225714068|gb|ACO12880.1| Splicing factor, arginine/serine-rich 4 [Lepeophtheirus salmonis]
gi|290462833|gb|ADD24464.1| Splicing factor, arginine/serine-rich 4 [Lepeophtheirus salmonis]
Length = 233
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ GN D R+ D+E+ F+ YGK+ V +K+G+ F+ +D RDA+DA++ LD +
Sbjct: 8 LYLGNISDDTRERDVEKFFKGYGKLREVALKNGYGFVEFEDHRDADDAVQDLDGKDMN-- 65
Query: 117 GRRLRVEWTK 126
G R+RVE+ +
Sbjct: 66 GSRVRVEFAR 75
>gi|198415633|ref|XP_002121331.1| PREDICTED: similar to splicing factor, arginine/serine-rich 4
[Ciona intestinalis]
Length = 292
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 88/195 (45%), Gaps = 41/195 (21%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
+F G + AR++D+ER F+ +GK+ +++K+G+ F+ DD RDA+DA+ ++ +
Sbjct: 6 VFIGRLSHRARENDVERFFKGFGKIRDINLKNGYGFVEFDDSRDADDAVYEMNNRDLC-- 63
Query: 117 GRRLRVEWTKHERGIRRPGGG-------------------------------SSARRPST 145
G R+ VE RG+ R GG +R
Sbjct: 64 GERVTVELA---RGVPRSSGGRDYRPDFRNDYRNDYRRRDDRGGGGGGRVNYFDSRAIGK 120
Query: 146 NTRPSKTLFVINFDPYHTRT--RDLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATR 200
P++T + + + TR +DL+ + G++ + + RRN V + +D R
Sbjct: 121 YGPPTRTNYRVIVENLSTRVSWQDLKDYLREAGEVTYADAHKHRRNEGVVDFATYDDMKR 180
Query: 201 ALDATNMSKLTDRVI 215
A+D + +++ R I
Sbjct: 181 AIDKLDNTEINGRKI 195
Score = 38.5 bits (88), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 161 YHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
+ R D+ER F+ +GKI + ++ + FV+++ DA A+ N L ++VE A
Sbjct: 13 HRARENDVERFFKGFGKIRDINLKNGYGFVEFDDSRDADDAVYEMNNRDLCGERVTVELA 72
>gi|225718298|gb|ACO14995.1| Splicing factor, arginine/serine-rich 4 [Caligus clemensi]
Length = 234
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 90/183 (49%), Gaps = 29/183 (15%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ GN + R+ D+E+ F+ YGK+ + +K+G+ F+ +D RDA+DA++ LD +
Sbjct: 8 LYLGNVSDETRERDVEKFFKGYGKLREIALKNGYGFVEFEDHRDADDAVQDLDGKDM--N 65
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPS-----------------KTLFVINFD 159
G R+RVE+ + R R GGS R PST++R S +T + I +
Sbjct: 66 GSRVRVEFARSPRDKR---GGS--RYPSTSSRRSPPRGRRGAPIKRNPPGRRTQYRIRVE 120
Query: 160 PYHTRT--RDLERHFEPYGKIISVRI---RRNFAFVQYEVQEDATRALDATNMSKLTDRV 214
+R +DL+ +F G I R N V++ + ALD + ++L R
Sbjct: 121 NLSSRASWQDLKDYFRSCGDITYTNAHKPRNNEGVVEFGDKRAMENALDRLDDTELAGRR 180
Query: 215 ISV 217
I +
Sbjct: 181 IRL 183
Score = 41.6 bits (96), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 162 HTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
TR RD+E+ F+ YGK+ + ++ + FV++E DA A+ + + + VE+A
Sbjct: 16 ETRERDVEKFFKGYGKLREIALKNGYGFVEFEDHRDADDAVQDLDGKDMNGSRVRVEFA 74
>gi|428182228|gb|EKX51089.1| hypothetical protein GUITHDRAFT_161608 [Guillardia theta CCMP2712]
Length = 258
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 22/166 (13%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G+ R+ DL+ F R+GK+ + +K GFAF+ D DAE A+R +D +
Sbjct: 7 VYVGHLSSRVRERDLDDEFSRFGKIRDISLKQGFAFVEYDHSEDAEYAVRKMDGVNL--E 64
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYG 176
G R+ VE+ K E R P GGS R + N +T +DL+ G
Sbjct: 65 GMRILVEFAK-ETPKRGPRGGSGYRIYAENL------------SQNTSWQDLKDFARKAG 111
Query: 177 KIISVRI----RRNFAFVQY---EVQEDATRALDATNMSKLTDRVI 215
K+I + ++Y E EDA LD T + + R++
Sbjct: 112 KVIYTDVFSERGEKLGVIEYATREDMEDALYKLDGTELHRSKVRLV 157
>gi|350295431|gb|EGZ76408.1| RNA-binding domain-containing protein [Neurospora tetrasperma FGSC
2509]
Length = 601
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 99/257 (38%), Gaps = 41/257 (15%)
Query: 58 FCGNFEYDARQSDLERLFRRYGKVDRV-------DMKSGFAFIYMDDERDAEDAIRGLDR 110
F N +DA + L+ F ++G V V + G+ F+ E+A +D
Sbjct: 353 FVRNIVFDATEEHLKGAFEKFGNVTDVFLARDPRGLSKGYGFVTFATREALEEACSQVDG 412
Query: 111 TEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLER 170
+ + GRR+ VE + + R S PS LF+ N PY T +L
Sbjct: 413 SFW--HGRRISVEPRR-----------AKVNRGSAVGEPSACLFIGNI-PYETTDAELNS 458
Query: 171 HFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 222
F + VR+ R FA + E A AL+ ++L +R I ++YA
Sbjct: 459 IFVGVDGLKDVRVAVDRATGWPRGFAHADFVDVEAAVNALEKLQGTQLGERTIKIDYA-- 516
Query: 223 DDDDRRNGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRV 282
P R + G RR P ++ G D R RS Y R+ G+ Y R
Sbjct: 517 ---------QPAAARQPRENNGERREYRPRQQRDGQRDGQRDGQRS-YNRDGGNRSYNRE 566
Query: 283 RSPSPYRRDRGSPDYGR 299
Y RD G+ Y R
Sbjct: 567 GGNRNYNRDGGNRSYNR 583
>gi|312074323|ref|XP_003139919.1| arginine/serine-rich splicing factor 1 [Loa loa]
gi|307764921|gb|EFO24155.1| arginine/serine-rich splicing factor 1 [Loa loa]
gi|393908262|gb|EJD74982.1| arginine/serine-rich splicing factor 1, variant 1 [Loa loa]
gi|393908263|gb|EJD74983.1| arginine/serine-rich splicing factor 1, variant 2 [Loa loa]
gi|393908264|gb|EJD74984.1| arginine/serine-rich splicing factor 1, variant 3 [Loa loa]
gi|393908265|gb|EJD74985.1| arginine/serine-rich splicing factor 1, variant 4 [Loa loa]
gi|402591888|gb|EJW85817.1| hypothetical protein WUBG_03274 [Wuchereria bancrofti]
Length = 237
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG----FAFIYMDDERDAEDAIRGLDRTE 112
++ GN D RQ DLE LF +YG ++ +D+K FAFI DD RDA DAIRG D E
Sbjct: 9 VYIGNLPPDIRQRDLEDLFYKYGHINFIDVKLTRGAPFAFIEFDDPRDARDAIRGRDGYE 68
Query: 113 FGRKGRRLRVEWT 125
G R+RVE T
Sbjct: 69 L--DGCRIRVEMT 79
>gi|12836310|dbj|BAB23599.1| unnamed protein product [Mus musculus]
Length = 339
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 24/180 (13%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y+ R+ D++R F YG++ +D+K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNSKELC-- 61
Query: 117 GRRLRVEWTKHERGIRR---------PGGGSSARRPSTNTR-----PSKTLFVINFDPYH 162
G R+ VE H RG RR GG T+ R P +T + + +
Sbjct: 62 GERVIVE---HARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLS 118
Query: 163 TRT--RDLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
+R +DL+ G++ + + R N +++ D RALD + +++ R I +
Sbjct: 119 SRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRL 178
>gi|397525476|ref|XP_003832692.1| PREDICTED: serine/arginine-rich splicing factor 9 [Pan paniscus]
Length = 274
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 83/175 (47%), Gaps = 14/175 (8%)
Query: 42 HSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMD 96
H L+ AA GN D R+ DLE LF +YG++ +++K+ FAF+ +
Sbjct: 54 HLMLTPAAERLXXXXXXXGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFE 113
Query: 97 DERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVI 156
D RDAEDAI G + ++G+ RLRVE+ + G G P TR S ++
Sbjct: 114 DPRDAEDAIYGRNGYDYGQC--RLRVEFPRTYGGRGGWPRGGRNGPP---TRRSDFRVLV 168
Query: 157 NFDPYHTRTRDLERHFEPYGKIISVRIRRN-FAFVQYEVQED---ATRALDATNM 207
+ P +DL+ H G + ++++ V+Y +ED A R LD T
Sbjct: 169 SGLPPSGSWQDLKDHMREAGDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTKF 223
>gi|291409855|ref|XP_002721207.1| PREDICTED: neurofilament, heavy polypeptide 200kDa-like
[Oryctolagus cuniculus]
Length = 967
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 26/186 (13%)
Query: 239 RSPDRGRRRSPSPYRRERGSPDYGRG--SSRSPYRRERGSPDYGRVRSPSPYRRDRGSPD 296
+SP++ + SP + E SP + ++SP + E SP+ + SP + + SP+
Sbjct: 598 KSPEKAK----SPVKEEAKSPAEAKSPEKAKSPVKEEAKSPEKAK----SPVKEEAKSPE 649
Query: 297 YGRNSSRSPYKKERAAIGHGRGP--SRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRG 354
+ SP K+E + + P ++SP + + SPE SP ++ SP +
Sbjct: 650 KAK----SPVKEEAKSPEKAKSPEKAKSPVKEEAKSPEKAK----SPVKEEAKSPEKAK- 700
Query: 355 PSRSPYERERPSPENGRG--GSRSPYRRERPSPDNGRVPSPNSMPEPRDSPGYDGADSPI 412
SP + E SPE + ++SP + E SP+ + P P ++ + A SP+
Sbjct: 701 ---SPVKEEAKSPEKAKSPEKAKSPVKEEAKSPEKAKSPEKAKSPVKEEAKSPEKAKSPV 757
Query: 413 NERYRS 418
E +S
Sbjct: 758 KEEAKS 763
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 22/147 (14%)
Query: 229 NGHSPDRNRDRSPDRGR--RRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSPS 286
SP + +SP++ + ++ SP + E SP+ + SP + E SP+ + S
Sbjct: 650 KAKSPVKEEAKSPEKAKSPEKAKSPVKEEAKSPEKAK----SPVKEEAKSPEKAK----S 701
Query: 287 PYRRDRGSPDYGRN--SSRSPYKKERAAIGHGRGP--SRSPYRRDRGSPENGHGSSPSPY 342
P + + SP+ ++ ++SP K+E + + P ++SP + + SPE SP
Sbjct: 702 PVKEEAKSPEKAKSPEKAKSPVKEEAKSPEKAKSPEKAKSPVKEEAKSPEKAK----SPV 757
Query: 343 RKGKPSPNNGRGPSRSPYERERPSPEN 369
++ SP + SP + E SPE
Sbjct: 758 KEEAKSPEKAK----SPVKEEAKSPEK 780
>gi|213515460|ref|NP_001133886.1| Splicing factor, arginine/serine-rich 9 [Salmo salar]
gi|209155694|gb|ACI34079.1| Splicing factor, arginine/serine-rich 9 [Salmo salar]
gi|223649152|gb|ACN11334.1| Splicing factor, arginine/serine-rich 9 [Salmo salar]
Length = 252
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 76/174 (43%), Gaps = 31/174 (17%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG-----FAFIYMDDERDAEDAIRGLDRT 111
I+ GN D ++ D+E LF +YGK+ +++K+ FAF+ +D RDAEDA+ G R
Sbjct: 6 IYVGNLPMDVQERDIEDLFFKYGKIRDIELKNNRGTIPFAFVRFEDPRDAEDAVYG--RN 63
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN--------------TRPSKTLFVIN 157
+G +LRVE+ R G S TR S+ ++
Sbjct: 64 GYGLGDSKLRVEYP------RSSGAKFSGPMGGGERGEGGGPKGRFGPPTRRSEFRVIVT 117
Query: 158 FDPYHTRTRDLERHFEPYGKIISVRIRRN----FAFVQYEVQEDATRALDATNM 207
P +DL+ H G + ++R+ FV+ E E A R LD T
Sbjct: 118 GLPPSGSWQDLKDHMREAGDVCFADVQRDGEGVVEFVRREDMEYALRRLDRTEF 171
>gi|327280352|ref|XP_003224916.1| PREDICTED: serine/arginine-rich splicing factor 4-like [Anolis
carolinensis]
Length = 261
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 19/175 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
+F G AR+ D+E+ F+ YG++ +++K+GF F+ +D RDA+DA+ L+ E +
Sbjct: 6 VFVGRLSPHARERDVEKFFKGYGRIREINLKNGFGFVEFEDHRDADDAVYELNGKELCNE 65
Query: 117 GRRLRVE-----------WTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRT 165
R+ +E +++ + GGGSS P R L V N
Sbjct: 66 --RVTIEHARARRGGRGRYSQRFSYYQSYGGGSSQYGPP--LRTEHRLIVENLSS-RVSW 120
Query: 166 RDLERHFEPYGKIISVRIRRNF---AFVQYEVQEDATRALDATNMSKLTDRVISV 217
+DL+ G++ V RN V++ D A+D + S+L R I +
Sbjct: 121 QDLKDFMRKAGEVTFVDAHRNNPNEGVVEFASSSDMKSAMDKLDGSELNGRRIKL 175
>gi|68035998|gb|AAY84875.1| alternative splicing regulator [Triticum aestivum]
Length = 254
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 74/167 (44%), Gaps = 17/167 (10%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG + +D+K +AF+ +D RDA+DAI G D
Sbjct: 7 RTIYVGNLPEDIREREIEDLFCKYGPIVDIDLKIPPRPPVYAFVEFEDPRDADDAIYGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERG--IRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRD 167
+F G +LRVE +G RP +S+ R R + V P +D
Sbjct: 67 GYDF--DGCKLRVELAHGGKGPSFDRPNSYTSSGRRGALRRSDYRVIVTGL-PSSASWQD 123
Query: 168 LERHFEPYGKII-------SVRIRRNFAFVQYEVQEDATRALDATNM 207
L+ H G + + I F YE + A R LD +
Sbjct: 124 LKDHMRRAGDVCFSDVYPGAGAITGIVEFPNYEDMKHAIRKLDDSEF 170
>gi|320168404|gb|EFW45303.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 239
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 56/105 (53%), Gaps = 4/105 (3%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M ++ G DAR+ D+E LF +YG+ V +K+GF F+ DD RDA+DA+R L +F
Sbjct: 1 MARLYVGRVSADARERDVEHLFGKYGRTRDVTLKNGFGFVEFDDVRDADDAMRDLHGRDF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINF 158
G RL VE + G RR G RR + TR + V N
Sbjct: 61 --MGDRLIVE--RANSGGRRDRGEPRERRFAPPTRTQYRVLVENL 101
>gi|170591729|ref|XP_001900622.1| SF2 [Brugia malayi]
gi|158591774|gb|EDP30377.1| SF2, putative [Brugia malayi]
Length = 277
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG----FAFIYMDDERDAEDAIRGLDRTE 112
++ GN D RQ DLE LF +YG ++ +D+K FAFI DD RDA DAIRG D E
Sbjct: 49 VYIGNLPPDIRQRDLEDLFYKYGHINFIDVKLTRGAPFAFIEFDDPRDARDAIRGRDGYE 108
Query: 113 FGRKGRRLRVEWT 125
G R+RVE T
Sbjct: 109 L--DGCRIRVEMT 119
>gi|15080592|gb|AAH12039.1| Splicing factor, arginine/serine-rich 6 [Mus musculus]
Length = 339
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 24/180 (13%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y+ R+ D++R F YG++ +D+K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNSKELC-- 61
Query: 117 GRRLRVEWTKHERGIRR---------PGGGSSARRPSTNTR-----PSKTLFVINFDPYH 162
G R+ VE H RG RR GG T+ R P +T + + +
Sbjct: 62 GERVIVE---HARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLS 118
Query: 163 TRT--RDLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
+R +DL+ G++ + + R N +++ D RALD + +++ R I +
Sbjct: 119 SRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRL 178
>gi|410215040|gb|JAA04739.1| serine/arginine-rich splicing factor 6 [Pan troglodytes]
gi|410302392|gb|JAA29796.1| serine/arginine-rich splicing factor 6 [Pan troglodytes]
gi|410360346|gb|JAA44682.1| serine/arginine-rich splicing factor 6 [Pan troglodytes]
Length = 344
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y+ R+ D++R F YG++ VD+K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELC-- 61
Query: 117 GRRLRVEWTKHERGIRR 133
G R+ VE H RG RR
Sbjct: 62 GERVIVE---HARGPRR 75
>gi|395829006|ref|XP_003787652.1| PREDICTED: serine/arginine-rich splicing factor 6 [Otolemur
garnettii]
Length = 345
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y+ R+ D++R F YG++ VD+K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELC-- 61
Query: 117 GRRLRVEWTKHERGIRR 133
G R+ VE H RG RR
Sbjct: 62 GERVIVE---HARGPRR 75
>gi|20127499|ref|NP_006266.2| serine/arginine-rich splicing factor 6 [Homo sapiens]
gi|307078161|ref|NP_001182497.1| splicing factor, arginine/serine-rich 6 [Pongo abelii]
gi|332209067|ref|XP_003253632.1| PREDICTED: serine/arginine-rich splicing factor 6 isoform 1
[Nomascus leucogenys]
gi|397511164|ref|XP_003825949.1| PREDICTED: serine/arginine-rich splicing factor 6 [Pan paniscus]
gi|426391709|ref|XP_004062210.1| PREDICTED: serine/arginine-rich splicing factor 6 isoform 1
[Gorilla gorilla gorilla]
gi|20981728|sp|Q13247.2|SRSF6_HUMAN RecName: Full=Serine/arginine-rich splicing factor 6; AltName:
Full=Pre-mRNA-splicing factor SRP55; AltName:
Full=Splicing factor, arginine/serine-rich 6
gi|13905094|gb|AAH06832.1| Splicing factor, arginine/serine-rich 6 [Homo sapiens]
gi|119596370|gb|EAW75964.1| splicing factor, arginine/serine-rich 6, isoform CRA_a [Homo
sapiens]
gi|119596373|gb|EAW75967.1| splicing factor, arginine/serine-rich 6, isoform CRA_a [Homo
sapiens]
Length = 344
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y+ R+ D++R F YG++ VD+K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELC-- 61
Query: 117 GRRLRVEWTKHERGIRR 133
G R+ VE H RG RR
Sbjct: 62 GERVIVE---HARGPRR 75
>gi|255542752|ref|XP_002512439.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
gi|223548400|gb|EEF49891.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
Length = 444
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 86/198 (43%), Gaps = 25/198 (12%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R ++ GN D R +++ LF +YG + RVD+++ G+AF+ +D +AE+AIRG D
Sbjct: 7 RTLYVGNLPGDIRWREVKDLFYKYGLIVRVDLRNPPRTPGYAFVQFEDACNAEEAIRGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGG-----------SSARRPSTNTRPSKTL---FV 155
F G RLRVE R PG G ++ S N PSK +
Sbjct: 67 GYNF--NGCRLRVELAYGGRKHSTPGHGGRKHSFPGRHYNTCSGISENHGPSKHSDHRVL 124
Query: 156 INFDPYHTRTRDLERHFEPYGKIISVRIR----RNFAFVQYEVQEDATRALDATNMSKLT 211
+ P +DL+ H G + R+ V Y+ +D A+ + S+
Sbjct: 125 VTGLPSSASWQDLKDHMRQAGDVCFSRVFPGRGGKTGIVDYKNYDDMKHAIKKLDDSEFR 184
Query: 212 DRVISVEYAVRDDDDRRN 229
+ VR DD RR+
Sbjct: 185 NAFSRSYVRVRKDDSRRS 202
>gi|52140007|gb|AAU29330.1| ASF/SF2-like pre-mRNA splicing factor SRP32'' [Zea mays]
Length = 150
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YGK+ +D+K G+AF+ +D RDAE+AI G D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFYKYGKIVDIDLKVPPRPPGYAFVEFEDPRDAEEAIAGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERG 130
F G RLRVE RG
Sbjct: 67 GYNF--DGHRLRVEAAHGGRG 85
>gi|196007380|ref|XP_002113556.1| expressed hypothetical protein [Trichoplax adhaerens]
gi|190583960|gb|EDV24030.1| expressed hypothetical protein [Trichoplax adhaerens]
Length = 263
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M ++ G R+ D+E+ FR YGK+ V +K F F+ DD RDAEDA+ L+ E
Sbjct: 1 MTRVYLGRLNSSVRERDVEKFFRDYGKLKEVTLKGTFGFVEFDDSRDAEDAVYDLNNKEL 60
Query: 114 GRKGRRLRVEWTKHERGIRRPG 135
G R+ VE+ ++ R R G
Sbjct: 61 C--GDRIIVEFARNRREARGRG 80
>gi|158255842|dbj|BAF83892.1| unnamed protein product [Homo sapiens]
Length = 344
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 85/178 (47%), Gaps = 24/178 (13%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y+ R+ D++R F YG++ VD+K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELC-- 61
Query: 117 GRRLRVEWTKHERGIRR---------PGGGSSARRPSTNTR-----PSKTLFVINFDPYH 162
G R+ VE H RG RR GG T+ R P +T + + +
Sbjct: 62 GERVIVE---HARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLS 118
Query: 163 TRT--RDLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
+R +DL+ G++ + + R N +++ D RALD + +++ R I
Sbjct: 119 SRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNI 176
>gi|30584231|gb|AAP36364.1| Homo sapiens splicing factor, arginine/serine-rich 6 [synthetic
construct]
gi|61371415|gb|AAX43663.1| splicing factor arginine/serine-rich 6 [synthetic construct]
gi|61371422|gb|AAX43664.1| splicing factor arginine/serine-rich 6 [synthetic construct]
Length = 345
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y+ R+ D++R F YG++ VD+K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELC-- 61
Query: 117 GRRLRVEWTKHERGIRR 133
G R+ VE H RG RR
Sbjct: 62 GERVIVE---HARGPRR 75
>gi|78369222|ref|NP_001030349.1| serine/arginine-rich splicing factor 6 [Bos taurus]
gi|122145041|sp|Q3B7L6.1|SRSF6_BOVIN RecName: Full=Serine/arginine-rich splicing factor 6; AltName:
Full=Splicing factor, arginine/serine-rich 6
gi|77567850|gb|AAI07554.1| Splicing factor, arginine/serine-rich 6 [Bos taurus]
Length = 345
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 86/180 (47%), Gaps = 24/180 (13%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y+ R+ D++R F YG++ +D+K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLGIDLKNGYGFVEFEDSRDADDAVYELNGKELC-- 61
Query: 117 GRRLRVEWTKHERGIRR---------PGGGSSARRPSTNTR-----PSKTLFVINFDPYH 162
G R+ VE H RG RR GG T+ R P +T F + +
Sbjct: 62 GERVIVE---HARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEFRLIVENLS 118
Query: 163 TRT--RDLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
+R +DL+ G++ + + R N +++ D RALD + +++ R I +
Sbjct: 119 SRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRL 178
Score = 44.7 bits (104), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 161 YHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
Y+ R +D++R F YG+++ + ++ + FV++E DA A+ N +L + VE+A
Sbjct: 11 YNVREKDIQRFFSGYGRLLGIDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHA 70
>gi|402882500|ref|XP_003904778.1| PREDICTED: serine/arginine-rich splicing factor 6 [Papio anubis]
gi|380815566|gb|AFE79657.1| serine/arginine-rich splicing factor 6 [Macaca mulatta]
gi|380815568|gb|AFE79658.1| serine/arginine-rich splicing factor 6 [Macaca mulatta]
gi|383420733|gb|AFH33580.1| serine/arginine-rich splicing factor 6 [Macaca mulatta]
gi|383420735|gb|AFH33581.1| serine/arginine-rich splicing factor 6 [Macaca mulatta]
gi|384948770|gb|AFI37990.1| serine/arginine-rich splicing factor 6 [Macaca mulatta]
gi|384948772|gb|AFI37991.1| serine/arginine-rich splicing factor 6 [Macaca mulatta]
Length = 343
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y+ R+ D++R F YG++ VD+K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELC-- 61
Query: 117 GRRLRVEWTKHERGIRR 133
G R+ VE H RG RR
Sbjct: 62 GERVIVE---HARGPRR 75
>gi|158254720|dbj|BAF83333.1| unnamed protein product [Homo sapiens]
Length = 221
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 11/160 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R+ DLE LF +YG++ +++K+ FAF+ +D RDAEDAI G +
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERH 171
++G+ RLRVE+ + G G P TR S +++ P +DL+ H
Sbjct: 76 DYGQC--RLRVEFPRTYGGRGGWPRGGRNGPP---TRRSDFRVLVSGLPPSGSWQDLKDH 130
Query: 172 FEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
G ++++ V+Y +ED AL + +K
Sbjct: 131 MREAGDACYADVQKDGVGMVEYLRKEDMEYALRKLDDTKF 170
>gi|357132692|ref|XP_003567963.1| PREDICTED: arginine/serine-rich-splicing factor RSP31-like
[Brachypodium distachyon]
Length = 319
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G R DLE LF RYG+V VDMK FAF+ D RDA+DA LD +F
Sbjct: 16 LYVGRLSSRTRSRDLEDLFGRYGRVRYVDMKHEFAFVEFSDPRDADDARYNLDGRDF--D 73
Query: 117 GRRLRVEWTKHERGIRRPGGGSSAR 141
G R+ VE+ K G+ R GGS R
Sbjct: 74 GSRMIVEFAK---GVPRGQGGSRDR 95
>gi|260833614|ref|XP_002611807.1| hypothetical protein BRAFLDRAFT_243385 [Branchiostoma floridae]
gi|229297179|gb|EEN67816.1| hypothetical protein BRAFLDRAFT_243385 [Branchiostoma floridae]
Length = 177
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 14/159 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG----FAFIYMDDERDAEDAIRGLDRTE 112
I+ GN D R D+E +F +YG + +D+K+ FAF+ DD+RDAEDA+RG R
Sbjct: 10 IYVGNLPPDIRVKDIEDIFYKYGNIRHIDLKNKRGPPFAFVEFDDKRDAEDAVRG--RDG 67
Query: 113 FGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHF 172
+ G RLRVE+ + GG +PS R S+ +++ P +DL+ H
Sbjct: 68 YNYDGYRLRVEFPRGTSR-GGYRGGRRVGQPS---RRSEYRVLVSGLPPTGSWQDLKDHM 123
Query: 173 EPYGKIISVRIRRN----FAFVQYEVQEDATRALDATNM 207
G + + R+ F+ YE + A + LD +
Sbjct: 124 REAGDVCYADVFRDGTGVVEFLNYEDMKYAVKQLDDSKF 162
>gi|193716028|ref|XP_001949124.1| PREDICTED: serine-arginine protein 55-like isoform 1 [Acyrthosiphon
pisum]
Length = 309
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
+F G + R+ DLER F++ G+V + MK+G+AF+ DD RDA+DA+ L+ E
Sbjct: 7 VFVGGLSHRVRERDLERFFQKIGRVKDIAMKNGYAFVEFDDYRDADDAVYELNGRELN-- 64
Query: 117 GRRLRVE 123
G R+ VE
Sbjct: 65 GERVSVE 71
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 161 YHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
+ R RDLER F+ G++ + ++ +AFV+++ DA A+ N +L +SVE A
Sbjct: 14 HRVRERDLERFFQKIGRVKDIAMKNGYAFVEFDDYRDADDAVYELNGRELNGERVSVERA 73
>gi|52140013|gb|AAU29334.1| ASF/SF2-like pre-mRNA splicing factor SRP31' [Zea mays]
gi|413944989|gb|AFW77638.1| ASF/SF2-like pre-mRNA splicing factor SRP31 [Zea mays]
Length = 253
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 46/79 (58%), Gaps = 7/79 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R+ +++ LF +YG++ +D+K GFAF+ +D RDAEDAI G D
Sbjct: 9 IYVGNLPGDIREREVDDLFYKYGRIVEIDLKIPPRPPGFAFVEFEDARDAEDAIYGRDGY 68
Query: 112 EFGRKGRRLRVEWTKHERG 130
F G RLRVE RG
Sbjct: 69 NF--DGHRLRVELAHGGRG 85
>gi|66911687|gb|AAH97003.1| Sfrs5b protein [Danio rerio]
Length = 164
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 36/57 (63%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
IF G AR+ D+ER F+ YG++ +D+K GF F+ DD RDAEDA+ LD E
Sbjct: 6 IFIGRLNPSAREKDVERFFKGYGRIRDIDLKRGFGFVEFDDPRDAEDAVYELDGKEL 62
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 153 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTD 212
+F+ +P R +D+ER F+ YG+I + ++R F FV+++ DA A+ + +L +
Sbjct: 6 IFIGRLNP-SAREKDVERFFKGYGRIRDIDLKRGFGFVEFDDPRDAEDAVYELDGKELCN 64
Query: 213 RVISVEYA 220
+++E+A
Sbjct: 65 ERVTIEHA 72
>gi|29893585|gb|AAP06839.1| putative transformer serine/arginine-rich ribonucleoprotein [Oryza
sativa Japonica Group]
gi|125585702|gb|EAZ26366.1| hypothetical protein OsJ_10248 [Oryza sativa Japonica Group]
Length = 324
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 86/195 (44%), Gaps = 30/195 (15%)
Query: 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI--------RRNFAFVQYEVQEDATR 200
P L+V T RDLE+HF G++I I R F FV ++A
Sbjct: 18 PGNNLYVTGLSARVT-DRDLEKHFSAEGEVIDASIVLDPWTRESRGFGFVTMATVKEADL 76
Query: 201 ALDATNMSKLTDRVISVEYAVRDDDDRRNGHSPDRNR-----DRSPDRGRRRSPS--PYR 253
+ + S L RVI+VE A RR G +P R RR SPS P
Sbjct: 77 CIKYLDRSVLEGRVITVEKA-----KRRRGRTPTPGRYLGTKSSCVTPARRYSPSYSPVE 131
Query: 254 RERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAI 313
R+R S Y SP RER YGR RS SPY R R Y R S SP+++ ++
Sbjct: 132 RDRYSSRY------SP-ERERSYSPYGRRRSYSPYNRRRSYSPYERRRSYSPHERRQSYS 184
Query: 314 GHGRGPSRSPYRRDR 328
+GR P SPY R R
Sbjct: 185 PYGRSP--SPYGRRR 197
>gi|448878368|gb|AGE46147.1| arginine/serine-rich splicing factor SR30 transcript VI [Sorghum
bicolor]
Length = 237
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 72/162 (44%), Gaps = 18/162 (11%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R+ +++ LF +YG++ +D+K GFAF+ +D DAEDAI G D
Sbjct: 9 IYVGNLPGDIREREVDDLFYKYGRIVEIDLKIPPRPPGFAFVEFEDPHDAEDAIYGRDGY 68
Query: 112 EFGRKGRRLRVEWTKHERG---IRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDL 168
F G RLRVE RG R SSA + + R + V P +DL
Sbjct: 69 NF--DGHRLRVELAHGGRGPSSFDRSSSYSSAGQRGASKRSDYRVMVTGL-PSSASWQDL 125
Query: 169 ERHFEPYGKIISVRIRRNFA-------FVQYEVQEDATRALD 203
+ H G + + R + YE + A R LD
Sbjct: 126 KDHMRRAGDVCFTDVYREAGATIGIADYTNYEDMKHAIRKLD 167
>gi|52140006|gb|AAU29329.1| ASF/SF2-like pre-mRNA splicing factor SRP32' [Zea mays]
gi|413955776|gb|AFW88425.1| ASF/SF2-like pre-mRNA splicing factor SRP32 [Zea mays]
Length = 257
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YGK+ +D+K G+AF+ +D RDAE+AI G D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFYKYGKIVDIDLKVPPRPPGYAFVEFEDPRDAEEAIAGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERG 130
F G RLRVE RG
Sbjct: 67 GYNF--DGHRLRVEAAHGGRG 85
>gi|443724659|gb|ELU12563.1| hypothetical protein CAPTEDRAFT_175470 [Capitella teleta]
Length = 321
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 5/74 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
I+ G Y R+ D+ER FR YG++ V +K+G+ F+ DD RDA+DA+ L+ E
Sbjct: 5 IYVGRLSYSVRERDIERFFRNYGRIVDVLLKNGYGFVEFDDYRDADDAVYELNGKELC-- 62
Query: 117 GRRLRVEWTKHERG 130
G R+ +E H RG
Sbjct: 63 GERVVIE---HARG 73
>gi|297814065|ref|XP_002874916.1| hypothetical protein ARALYDRAFT_327556 [Arabidopsis lyrata subsp.
lyrata]
gi|297320753|gb|EFH51175.1| hypothetical protein ARALYDRAFT_327556 [Arabidopsis lyrata subsp.
lyrata]
Length = 281
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 7/76 (9%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG V ++D+K G+AF+ +D RDA+DAI G D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRD 66
Query: 110 RTEFGRKGRRLRVEWT 125
+F G RLRVE
Sbjct: 67 GYDF--DGHRLRVELA 80
>gi|281210217|gb|EFA84385.1| CCHC-type Zn finger-containing protein [Polysphondylium pallidum
PN500]
Length = 274
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M I+ G +DAR+ ++E F RYG++ + MK GF FI A++AI RT F
Sbjct: 1 MSKIYVGQLAFDAREREIEDHFGRYGRISHIQMKKGFCFIEYSSRDAADEAINSSHRTNF 60
Query: 114 GRKGRRLRVEWTKHERGIRRP 134
GR + VE + H G +RP
Sbjct: 61 --LGRSIVVEKS-HSNGAKRP 78
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 36/59 (61%)
Query: 160 PYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
+ R R++E HF YG+I +++++ F F++Y ++ A A+++++ + R I VE
Sbjct: 10 AFDAREREIEDHFGRYGRISHIQMKKGFCFIEYSSRDAADEAINSSHRTNFLGRSIVVE 68
>gi|108707341|gb|ABF95136.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 347
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 86/195 (44%), Gaps = 30/195 (15%)
Query: 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI--------RRNFAFVQYEVQEDATR 200
P L+V T RDLE+HF G++I I R F FV ++A
Sbjct: 41 PGNNLYVTGLSARVT-DRDLEKHFSAEGEVIDASIVLDPWTRESRGFGFVTMATVKEADL 99
Query: 201 ALDATNMSKLTDRVISVEYAVRDDDDRRNGHSPDRNR-----DRSPDRGRRRSPS--PYR 253
+ + S L RVI+VE A RR G +P R RR SPS P
Sbjct: 100 CIKYLDRSVLEGRVITVEKA-----KRRRGRTPTPGRYLGTKSSCVTPARRYSPSYSPVE 154
Query: 254 RERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAI 313
R+R S Y SP RER YGR RS SPY R R Y R S SP+++ ++
Sbjct: 155 RDRYSSRY------SP-ERERSYSPYGRRRSYSPYNRRRSYSPYERRRSYSPHERRQSYS 207
Query: 314 GHGRGPSRSPYRRDR 328
+GR P SPY R R
Sbjct: 208 PYGRSP--SPYGRRR 220
>gi|108707340|gb|ABF95135.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 346
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 86/195 (44%), Gaps = 30/195 (15%)
Query: 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI--------RRNFAFVQYEVQEDATR 200
P L+V T RDLE+HF G++I I R F FV ++A
Sbjct: 40 PGNNLYVTGLSARVT-DRDLEKHFSAEGEVIDASIVLDPWTRESRGFGFVTMATVKEADL 98
Query: 201 ALDATNMSKLTDRVISVEYAVRDDDDRRNGHSPDRNR-----DRSPDRGRRRSPS--PYR 253
+ + S L RVI+VE A RR G +P R RR SPS P
Sbjct: 99 CIKYLDRSVLEGRVITVEKA-----KRRRGRTPTPGRYLGTKSSCVTPARRYSPSYSPVE 153
Query: 254 RERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAI 313
R+R S Y SP RER YGR RS SPY R R Y R S SP+++ ++
Sbjct: 154 RDRYSSRY------SP-ERERSYSPYGRRRSYSPYNRRRSYSPYERRRSYSPHERRQSYS 206
Query: 314 GHGRGPSRSPYRRDR 328
+GR P SPY R R
Sbjct: 207 PYGRSP--SPYGRRR 219
>gi|52140015|gb|AAU29336.1| ASF/SF2-like pre-mRNA splicing factor SRP31''' [Zea mays]
gi|413944988|gb|AFW77637.1| ASF/SF2-like pre-mRNA splicing factor SRP31 [Zea mays]
Length = 264
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 46/79 (58%), Gaps = 7/79 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R+ +++ LF +YG++ +D+K GFAF+ +D RDAEDAI G D
Sbjct: 9 IYVGNLPGDIREREVDDLFYKYGRIVEIDLKIPPRPPGFAFVEFEDARDAEDAIYGRDGY 68
Query: 112 EFGRKGRRLRVEWTKHERG 130
F G RLRVE RG
Sbjct: 69 NF--DGHRLRVELAHGGRG 85
>gi|426232112|ref|XP_004010078.1| PREDICTED: uncharacterized protein LOC101116481 [Ovis aries]
Length = 233
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y+ R+ D++R F YG++ +D+K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELC-- 61
Query: 117 GRRLRVEWTKHERGIRRPGGGSS 139
G R+ VE H RG RR G S
Sbjct: 62 GERVIVE---HARGPRRDRDGYS 81
>gi|30679143|ref|NP_567235.3| splicing factor SR1B [Arabidopsis thaliana]
gi|332656770|gb|AEE82170.1| splicing factor SR1B [Arabidopsis thaliana]
Length = 278
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 77/178 (43%), Gaps = 30/178 (16%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG V ++D+K G+AF+ +D RDA+DAI G D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN----------------TRPSKTL 153
+F G LRVE G RR + +R S+
Sbjct: 67 GYDF--DGHHLRVELA---HGGRRSSHDARGSYSGRGRGGRGGGDGGGRERGPSRRSEYR 121
Query: 154 FVINFDPYHTRTRDLERHFEPYGKIISVRIRRN----FAFVQYEVQEDATRALDATNM 207
V++ P +DL+ H G++ ++ R+ V Y ED ALD T
Sbjct: 122 VVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYALDDTEF 179
>gi|194674395|ref|XP_870725.3| PREDICTED: neurofilament heavy polypeptide isoform 2 [Bos taurus]
Length = 1023
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 86/196 (43%), Gaps = 32/196 (16%)
Query: 229 NGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSPY 288
SP + +SP++ + SP + E SP+ + SP + E SP+ + SP
Sbjct: 600 KAKSPVKEEAKSPEKAK----SPVKEEAKSPEKAK----SPVKEEAKSPEKAK----SPV 647
Query: 289 RRDRGSPDYGRNSSRSPYKKERAAIGHGRGP--SRSPYRRDRGSPENGHG--SSPSPYRK 344
+ + SP+ +SP K+E + P ++SP + + SPE + SP +
Sbjct: 648 KEEAKSPEKA----KSPVKEE------AKSPEKAKSPVKEEAKSPEKAKSPVEAKSPEKA 697
Query: 345 GKPSPNNGRGP--SRSPYERERPSPENGRGGSRSPYRRERPSPDNGRVPSPNSMPEPRDS 402
P+ + P ++SP + E SPE +SP + E SP+ + P+ P +
Sbjct: 698 KSPAKEEAKSPEKAKSPVKEEAKSPEKA----KSPVKEEAKSPEKAKSPAKEEAKSPEKA 753
Query: 403 PGYDGADSPINERYRS 418
+ SP+ E +S
Sbjct: 754 KSPEKPKSPVKEEAKS 769
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 84/198 (42%), Gaps = 36/198 (18%)
Query: 229 NGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSPY 288
SP + +SP++ + SP + E SP+ + SP + E SP+ + SP
Sbjct: 614 KAKSPVKEEAKSPEKAK----SPVKEEAKSPEKAK----SPVKEEAKSPEKAK----SPV 661
Query: 289 RRDRGSPDYGRNSSRSPYKKERAAIGHGRGP--------SRSPYRRDRGSPENGHGSSPS 340
+ + SP+ + SP K+E + + P ++SP + + SPE S
Sbjct: 662 KEEAKSPEKAK----SPVKEEAKSPEKAKSPVEAKSPEKAKSPAKEEAKSPEKAK----S 713
Query: 341 PYRKGKPSPNNGRGPSRSPYERERPSPENGRGGSRSPYRRERPSPDNGRVPSPNSMPEPR 400
P ++ SP +SP + E SPE +SP + E SP+ + P P
Sbjct: 714 PVKEEAKSPEKA----KSPVKEEAKSPEKA----KSPAKEEAKSPEKAKSPEKPKSPVKE 765
Query: 401 DSPGYDGADSPINERYRS 418
++ + SP+ E +S
Sbjct: 766 EAKSPEKPKSPVKEEAKS 783
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 82/183 (44%), Gaps = 18/183 (9%)
Query: 250 SPYRRERGSPDYGRG--SSRSPYRRERGSPDYGRVRSPSPYRRDRGSPDYGRN--SSRSP 305
SP + E SP + ++SP + E SP +SP+ + SP+ ++ ++SP
Sbjct: 489 SPEKEEAKSPAEAKSPEKAKSPVKEEAKSPQKEEAKSPAEVK----SPEKAKSPVEAKSP 544
Query: 306 YKKERAAIGHGRGP--SRSPYRRDRGSPENGHG--SSPSPYRKGKPSPNNGRGP--SRSP 359
K + + P ++SP + + SPE + SP ++ SP + P ++SP
Sbjct: 545 EKAKSPVKEEAKSPEKAKSPEKEEAKSPEKAKSPEKAKSPVKEEAKSPVEAKSPEKAKSP 604
Query: 360 YERERPSPENGRG----GSRSPYRRERPSPDNGRVPSPNSMPEPRDSPGYDGADSPINER 415
+ E SPE + ++SP + + P + + P P ++ + A SP+ E
Sbjct: 605 VKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEE 664
Query: 416 YRS 418
+S
Sbjct: 665 AKS 667
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 42/218 (19%)
Query: 229 NGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGR----VRS 284
SP + +SP++ + SP + E SP+ + SP + E SP+ + +S
Sbjct: 642 KAKSPVKEEAKSPEKAK----SPVKEEAKSPEKAK----SPVKEEAKSPEKAKSPVEAKS 693
Query: 285 P----SPYRRDRGSPDYGRN----SSRSPYKKERAAIGHGRGP--SRSPYRRDRGSPENG 334
P SP + + SP+ ++ ++SP K + + P ++SP + + SPE
Sbjct: 694 PEKAKSPAKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPAKEEAKSPEKA 753
Query: 335 HGSSP----SPYRKGKPSPNNGRGPSRSPYERERPSPENGRGGSRSPYRRERPSPDNGRV 390
SP SP ++ SP +SP + E SPE +SP + E SP+ +
Sbjct: 754 K--SPEKPKSPVKEEAKSPEK----PKSPVKEEAKSPEK----PKSPVKEEAKSPEKAKS 803
Query: 391 PSPNSMPEP-RDSPGYDGADSPINE-----RYRSRSPP 422
P + P ++ + A SP+ E R++ PP
Sbjct: 804 PVKDEAKAPGKEVLKKEEAKSPVKEEEKPQEVRAKEPP 841
Score = 44.7 bits (104), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 10/154 (6%)
Query: 267 RSPYRRERGSPDYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRR 326
+SP E SP+ +SP+ + + + ++SP K+E + + P ++
Sbjct: 480 KSPPAEEAASPEKEEAKSPAEAKSPEKAKSPVKEEAKSPQKEEAKSPAEVKSPEKAKSPV 539
Query: 327 DRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSPENGRG--GSRSPYRRERPS 384
+ SPE SP ++ SP +SP + E SPE + ++SP + E S
Sbjct: 540 EAKSPEKAK----SPVKEEAKSPEKA----KSPEKEEAKSPEKAKSPEKAKSPVKEEAKS 591
Query: 385 PDNGRVPSPNSMPEPRDSPGYDGADSPINERYRS 418
P + P P ++ + A SP+ E +S
Sbjct: 592 PVEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKS 625
>gi|222617767|gb|EEE53899.1| hypothetical protein OsJ_00434 [Oryza sativa Japonica Group]
Length = 377
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G R DLE LF RYG+V VDMK FAF+ D RDA++A LD +F
Sbjct: 73 LYVGRLSSRTRTRDLEDLFGRYGRVRYVDMKHEFAFVEFSDARDADEARYNLDGRDF--D 130
Query: 117 GRRLRVEWTKHERGIRRPGGGS 138
G R+ VE+ K G+ R GGS
Sbjct: 131 GSRMIVEFAK---GVPRGPGGS 149
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 163 TRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
TRTRDLE F YG++ V ++ FAFV++ DA A + + VE+A
Sbjct: 82 TRTRDLEDLFGRYGRVRYVDMKHEFAFVEFSDARDADEARYNLDGRDFDGSRMIVEFA 139
>gi|297484942|ref|XP_002694652.1| PREDICTED: neurofilament heavy polypeptide isoform 2 [Bos taurus]
gi|296478433|tpg|DAA20548.1| TPA: neurofilament, heavy polypeptide 200kDa-like isoform 2 [Bos
taurus]
Length = 1023
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 86/196 (43%), Gaps = 32/196 (16%)
Query: 229 NGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSPY 288
SP + +SP++ + SP + E SP+ + SP + E SP+ + SP
Sbjct: 600 KAKSPVKEEAKSPEKAK----SPVKEEAKSPEKAK----SPVKEEAKSPEKAK----SPV 647
Query: 289 RRDRGSPDYGRNSSRSPYKKERAAIGHGRGP--SRSPYRRDRGSPENGHG--SSPSPYRK 344
+ + SP+ +SP K+E + P ++SP + + SPE + SP +
Sbjct: 648 KEEAKSPEKA----KSPVKEE------AKSPEKAKSPVKEEAKSPEKAKSPVEAKSPEKA 697
Query: 345 GKPSPNNGRGP--SRSPYERERPSPENGRGGSRSPYRRERPSPDNGRVPSPNSMPEPRDS 402
P+ + P ++SP + E SPE +SP + E SP+ + P+ P +
Sbjct: 698 KSPAKEEAKSPEKAKSPVKEEAKSPEKA----KSPVKEEAKSPEKAKSPAKEEAKSPEKA 753
Query: 403 PGYDGADSPINERYRS 418
+ SP+ E +S
Sbjct: 754 KSPEKPKSPVKEEAKS 769
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 84/198 (42%), Gaps = 36/198 (18%)
Query: 229 NGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSPY 288
SP + +SP++ + SP + E SP+ + SP + E SP+ + SP
Sbjct: 614 KAKSPVKEEAKSPEKAK----SPVKEEAKSPEKAK----SPVKEEAKSPEKAK----SPV 661
Query: 289 RRDRGSPDYGRNSSRSPYKKERAAIGHGRGP--------SRSPYRRDRGSPENGHGSSPS 340
+ + SP+ + SP K+E + + P ++SP + + SPE S
Sbjct: 662 KEEAKSPEKAK----SPVKEEAKSPEKAKSPVEAKSPEKAKSPAKEEAKSPEKAK----S 713
Query: 341 PYRKGKPSPNNGRGPSRSPYERERPSPENGRGGSRSPYRRERPSPDNGRVPSPNSMPEPR 400
P ++ SP +SP + E SPE +SP + E SP+ + P P
Sbjct: 714 PVKEEAKSPEKA----KSPVKEEAKSPEKA----KSPAKEEAKSPEKAKSPEKPKSPVKE 765
Query: 401 DSPGYDGADSPINERYRS 418
++ + SP+ E +S
Sbjct: 766 EAKSPEKPKSPVKEEAKS 783
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 32/196 (16%)
Query: 229 NGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSPY 288
SP + +SP++ + SP + E SP+ + SP + E SP+ + SP
Sbjct: 628 KAKSPVKEEAKSPEKAK----SPVKEEAKSPEKAK----SPVKEEAKSPEKAK----SPV 675
Query: 289 RRDRGSPDYGRN--SSRSPYKKERAAIGHGRGP--SRSPYRRDRGSPENGHGSSPSPYRK 344
+ + SP+ ++ ++SP K + A + P ++SP + + SPE SP ++
Sbjct: 676 KEEAKSPEKAKSPVEAKSPEKAKSPAKEEAKSPEKAKSPVKEEAKSPEKAK----SPVKE 731
Query: 345 GKPSPNNGRGPSRSPYERERPSPENGRGGSR--SPYRRERPSPDNGRVPSPNSMPEPRDS 402
SP + P++ E SPE + + SP + E SP+ + P + E S
Sbjct: 732 EAKSPEKAKSPAK----EEAKSPEKAKSPEKPKSPVKEEAKSPEKPKSP----VKEEAKS 783
Query: 403 PGYDGADSPINERYRS 418
P + SP+ E +S
Sbjct: 784 P--EKPKSPVKEEAKS 797
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 96/218 (44%), Gaps = 42/218 (19%)
Query: 229 NGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGR----VRS 284
SP + +SP++ + SP + E SP+ + SP + E SP+ + +S
Sbjct: 642 KAKSPVKEEAKSPEKAK----SPVKEEAKSPEKAK----SPVKEEAKSPEKAKSPVEAKS 693
Query: 285 P----SPYRRDRGSPDYGRN----SSRSPYKKERAAIGHGRGP--SRSPYRRDRGSPENG 334
P SP + + SP+ ++ ++SP K + + P ++SP + + SPE
Sbjct: 694 PEKAKSPAKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPAKEEAKSPEKA 753
Query: 335 HGSSP----SPYRKGKPSPNNGRGPSRSPYERERPSPENGRGGSRSPYRRERPSPDNGRV 390
SP SP ++ SP +SP + E SPE +SP + E SP+ +
Sbjct: 754 K--SPEKPKSPVKEEAKSPEK----PKSPVKEEAKSPEK----PKSPVKEEAKSPEKAKS 803
Query: 391 PSPNSMPEP-RDSPGYDGADSPINE-----RYRSRSPP 422
P + P ++ P + A SP+ E R++ PP
Sbjct: 804 PVKDEAKAPGKEVPKKEEAKSPVKEEEKPQEVRAKEPP 841
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 82/183 (44%), Gaps = 18/183 (9%)
Query: 250 SPYRRERGSPDYGRG--SSRSPYRRERGSPDYGRVRSPSPYRRDRGSPDYGRN--SSRSP 305
SP + E SP + ++SP + E SP +SP+ + SP+ ++ ++SP
Sbjct: 489 SPEKEEAKSPAEAKSPEKAKSPVKEEAKSPQKEEAKSPAEVK----SPEKAKSPVEAKSP 544
Query: 306 YKKERAAIGHGRGP--SRSPYRRDRGSPENGHG--SSPSPYRKGKPSPNNGRGP--SRSP 359
K + + P ++SP + + SPE + SP ++ SP + P ++SP
Sbjct: 545 EKAKSPVKEEAKSPEKAKSPEKEEAKSPEKAKSPEKAKSPVKEEAKSPVEAKSPEKAKSP 604
Query: 360 YERERPSPENGRG----GSRSPYRRERPSPDNGRVPSPNSMPEPRDSPGYDGADSPINER 415
+ E SPE + ++SP + + P + + P P ++ + A SP+ E
Sbjct: 605 VKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEE 664
Query: 416 YRS 418
+S
Sbjct: 665 AKS 667
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 10/154 (6%)
Query: 267 RSPYRRERGSPDYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRR 326
+SP E SP+ +SP+ + + + ++SP K+E + + P ++
Sbjct: 480 KSPPAEEAASPEKEEAKSPAEAKSPEKAKSPVKEEAKSPQKEEAKSPAEVKSPEKAKSPV 539
Query: 327 DRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSPENGRG--GSRSPYRRERPS 384
+ SPE SP ++ SP +SP + E SPE + ++SP + E S
Sbjct: 540 EAKSPEKAK----SPVKEEAKSPEKA----KSPEKEEAKSPEKAKSPEKAKSPVKEEAKS 591
Query: 385 PDNGRVPSPNSMPEPRDSPGYDGADSPINERYRS 418
P + P P ++ + A SP+ E +S
Sbjct: 592 PVEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKS 625
>gi|448878356|gb|AGE46141.1| arginine/serine-rich splicing factor SR32 transcript II [Sorghum
bicolor]
Length = 322
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG++ +D+K G+AF+ +D RDAEDAI G D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDARDAEDAIAGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERG 130
F G RLRVE RG
Sbjct: 67 GYNF--DGHRLRVEAAHGGRG 85
>gi|195996923|ref|XP_002108330.1| hypothetical protein TRIADDRAFT_49822 [Trichoplax adhaerens]
gi|190589106|gb|EDV29128.1| hypothetical protein TRIADDRAFT_49822 [Trichoplax adhaerens]
Length = 223
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 7/72 (9%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG-----FAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R+ DLE LF +YGK+ + +K FAF+ +D+RDAEDAI G D
Sbjct: 9 IYIGNLPSDIRERDLEDLFYKYGKILSISLKDNRRGPPFAFVEFEDKRDAEDAIDGRDGY 68
Query: 112 EFGRKGRRLRVE 123
+F G RLRVE
Sbjct: 69 DF--DGCRLRVE 78
>gi|393912529|gb|EFO18201.2| Sfrs5 protein [Loa loa]
Length = 287
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 15/172 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y A + D+E FR YG++ + +K+GF F+ DD RDA+DA+ L+ E
Sbjct: 8 VYVGRLSYRASERDIEHFFRGYGRIRDIVLKNGFGFVEFDDPRDADDAVYELNGKELC-- 65
Query: 117 GRRLRVEWTKHERGIR-RPGGGSSARRP-----STNTRPSKTLFVINFDPYHTRT--RDL 168
G R+ +E+++ RG R R G G R P S P +T + + + +R +DL
Sbjct: 66 GERVILEFSR--RGPRSRMGFGGFDRFPPPRRESRYGPPQQTRYRLIVENLSSRCSWQDL 123
Query: 169 ERHFEPYGKIISVRIRR---NFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
+ G++ + N V + ++D RALD ++ R + +
Sbjct: 124 KDIMRTAGEVTFADAHKQHPNEGIVCFLTRDDLERALDKLQGKEVNGRKLKL 175
>gi|198432543|ref|XP_002131859.1| PREDICTED: similar to splicing factor, arginine/serine-rich 1
[Ciona intestinalis]
Length = 235
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 12/161 (7%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS----GFAFIYMDDERDAEDAIRGLDRTE 112
++ GN D R+ D+E LF +YG + V++K+ FAF+ +D RDAED++ G R
Sbjct: 11 VYVGNLPPDVREKDVEDLFYKYGSIRHVNLKNRRGPPFAFVEFEDRRDAEDSVHG--RNG 68
Query: 113 FGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLF--VINFDPYHTRTRDLER 170
+ G +LRVE + +RP G S+ R +T F +++ P +DL+
Sbjct: 69 YNFDGYKLRVEHPRGNGPSQRPAYGMSSFRARGGPPSRRTDFRVMVSGLPPTGSWQDLKD 128
Query: 171 HFEPYGKIISVRIRRN----FAFVQYEVQEDATRALDATNM 207
H G + + R+ FV + + A + LD T
Sbjct: 129 HMREAGDVCYADVYRDGTGVVEFVNRDDMQFAVKHLDDTKF 169
>gi|448878366|gb|AGE46146.1| arginine/serine-rich splicing factor SR30 transcript V [Sorghum
bicolor]
Length = 278
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 72/162 (44%), Gaps = 18/162 (11%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R+ +++ LF +YG++ +D+K GFAF+ +D DAEDAI G D
Sbjct: 9 IYVGNLPGDIREREVDDLFYKYGRIVEIDLKIPPRPPGFAFVEFEDPHDAEDAIYGRDGY 68
Query: 112 EFGRKGRRLRVEWTKHERG---IRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDL 168
F G RLRVE RG R SSA + + R + V P +DL
Sbjct: 69 NF--DGHRLRVELAHGGRGPSSFDRSSSYSSAGQRGASKRSDYRVMVTGL-PSSASWQDL 125
Query: 169 ERHFEPYGKIISVRIRRNFA-------FVQYEVQEDATRALD 203
+ H G + + R + YE + A R LD
Sbjct: 126 KDHMRRAGDVCFTDVYREAGATIGIADYTNYEDMKHAIRKLD 167
>gi|390352204|ref|XP_003727843.1| PREDICTED: serine/arginine-rich splicing factor 4-like isoform 1
[Strongylocentrotus purpuratus]
Length = 302
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 5/74 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y AR+ D+ER FR +G++ +++K+GF F+ +D RDA+DA+ L+ E
Sbjct: 6 VYVGRLSYQARERDVERFFRGFGRIREINLKNGFGFVEFEDYRDADDAVYELNGKEL--V 63
Query: 117 GRRLRVEWTKHERG 130
G R+ +E H RG
Sbjct: 64 GERVIIE---HARG 74
>gi|58271356|ref|XP_572834.1| polyadenylate-binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|134114714|ref|XP_774065.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819167|sp|P0CP47.1|PABP_CRYNB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|338819168|sp|P0CP46.1|PABP_CRYNJ RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|50256695|gb|EAL19418.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229093|gb|AAW45527.1| polyadenylate-binding protein, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 673
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 77/180 (42%), Gaps = 32/180 (17%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDAIRGL 108
++ G + ++ L +F G V D V +S G+A++ + D E A+ L
Sbjct: 48 LYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 107
Query: 109 DRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDL 168
+ + KG+ R+ W++ + +R+ G G+ +F+ N D + L
Sbjct: 108 NYSLI--KGQSCRIMWSQRDPALRKTGQGN--------------IFIKNLD-QSIDNKAL 150
Query: 169 ERHFEPYGKIISVRI-------RRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
F +G I+S ++ R FAFV Y E A A+ A N L D+ + V + V
Sbjct: 151 HDTFAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHV 210
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 92/391 (23%), Positives = 147/391 (37%), Gaps = 55/391 (14%)
Query: 31 RRLYVLGFRRSHSQLS-IAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-- 87
+++YV +LS + A ++ N + + ++ E L + +G V +
Sbjct: 202 KKVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRD 261
Query: 88 -----SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARR 142
GF F+ ++ A A+ L+ E K TK ER R
Sbjct: 262 EKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRL 321
Query: 143 PSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN-------FAFVQYEVQ 195
+ L+V N D R L FE +G I S ++ R+ F FV Y
Sbjct: 322 ENEAKSAGVNLYVKNLDDEWDDDR-LRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSP 380
Query: 196 EDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSPDRNRDRSPDRGRRRSPSP-YRR 254
++AT+A+ N + + + V A R D R+ S + R+ R + + P +
Sbjct: 381 DEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQALES--QIAQRAQQRMQYGAGFPGMQG 438
Query: 255 ERGSPDYG---------------------RGSSRSPYRRERGSPDYGRVRSPSPYRRDRG 293
G P YG G +P + P + P P G
Sbjct: 439 YMGQPMYGYPPMPGYGQPMPGMPPVRGPMMGYPGAPQNMMQSRPRFNPNGQPLP----GG 494
Query: 294 SPDYGRNSSRSPYKKERAAIGHGR--GPSRSPYRRDRGSPENGHGSSPSPYRKGKPS--- 348
P YG + PY A G+ G +R P + P NG G SP +G P+
Sbjct: 495 VPAYGM-PPQVPYP---GAPGYPVRPGGARIPAAPNANGPRNG-GPSPVGAPQGLPAGSI 549
Query: 349 PNNGRGPSRSPYERERPSPENGRGGSRSPYR 379
P G+ P+R P+E+ P+P+ GR ++S R
Sbjct: 550 PRGGQMPAR-PHEQAAPAPQAGRLDAQSLAR 579
>gi|324512727|gb|ADY45260.1| Splicing factor, arginine/serine-rich 3 [Ascaris suum]
Length = 242
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 6/73 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG----FAFIYMDDERDAEDAIRGLDRTE 112
++ GN + +Q DLE LF +YG++ +D+K FAF+ +D RDAEDAIRG R
Sbjct: 9 VYVGNLPSNVKQRDLEDLFDKYGRICFIDVKYSRGAPFAFLEFEDSRDAEDAIRG--RDG 66
Query: 113 FGRKGRRLRVEWT 125
+ G R+RVE T
Sbjct: 67 YDLDGCRIRVEMT 79
>gi|281203274|gb|EFA77474.1| SAP DNA-binding domain-containing protein [Polysphondylium pallidum
PN500]
Length = 836
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 76/186 (40%), Gaps = 32/186 (17%)
Query: 37 GFRRSHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDR-VDMKS------- 88
G + + L+I+ +F GN + + L ++F +YG+VDR + MK+
Sbjct: 366 GTKLKNCTLNISEMPISDTLLFIGNLGPEVGREQLRKMFEKYGEVDRAIVMKNKRSGESK 425
Query: 89 GFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTR 148
G+ FI + A A L T++ GR LRV+W +
Sbjct: 426 GYGFIDFRTKLQANAAKSSLGSTKYN--GRNLRVDWADSCSTLE--------------LM 469
Query: 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATR 200
SKT+F+ L + F +GKI + R FAF+ YE+ EDA +
Sbjct: 470 HSKTIFIDRLLRNFVDRTILRKLFTKFGKIRDCNVFPNPNTGQPRGFAFIDYELVEDAEK 529
Query: 201 ALDATN 206
A A N
Sbjct: 530 AQKAMN 535
>gi|47086241|ref|NP_998064.1| splicing factor, arginine/serine-rich 9 [Danio rerio]
gi|45501375|gb|AAH67134.1| Zgc:77449 [Danio rerio]
Length = 244
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 15/164 (9%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG-----FAFIYMDDERDAEDAIRGLDRT 111
I+ GN D ++ D+E LF +YGK+ +++K+ FAF+ +D RDAEDA+ G R
Sbjct: 6 IYVGNLPMDVQERDIEDLFFKYGKIRDIELKNNRSTIPFAFVRFEDPRDAEDAVFG--RN 63
Query: 112 EFGRKGRRLRVEWTKHE----RGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRD 167
+G +LRVE+ + G GGG R TR S+ ++ P +D
Sbjct: 64 GYGFGDCKLRVEYPRSSGSKFSGPAGGGGGGPRGRFGPPTRRSEFRVIVTGLPPTGSWQD 123
Query: 168 LERHFEPYGKIISVRIRRN----FAFVQYEVQEDATRALDATNM 207
L+ H G + ++R+ F++ E E A R LD+T
Sbjct: 124 LKDHMREAGDVCFADVQRDGEGVVEFLRREDMEYALRRLDSTEF 167
>gi|170087376|ref|XP_001874911.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650111|gb|EDR14352.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 297
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 83/187 (44%), Gaps = 19/187 (10%)
Query: 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 112
M R ++ G DAR D+ + F YG++ + +GF F+ ++ +DAEDA+ +
Sbjct: 1 MSRRLYLGRLPTDARSDDVSKFFDGYGRIIDCRVMTGFGFVEFENAKDAEDAVHNFNGKP 60
Query: 113 FGRKGRRLRVEWTKHERGIR------RPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTR 166
F G + VE+ K R R R GGG A R + RP +++ T +
Sbjct: 61 F--MGVNIVVEFAKESRPRREVYDNDRGGGGHGAPR---SRRPPGIRLIVSGVSRDTSWQ 115
Query: 167 DLERHFEPYGKIISVRIRRNF---AFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 223
DL+ G + I R+ ++Y +EDA RA+ + L R + V
Sbjct: 116 DLKDFGRDAGSVSFADIDRDVPGQGVLEYLSREDADRAVKELDGKDLRGRPVRVAL---- 171
Query: 224 DDDRRNG 230
DD R+G
Sbjct: 172 -DDSRSG 177
>gi|340371197|ref|XP_003384132.1| PREDICTED: serine/arginine-rich splicing factor 1-like [Amphimedon
queenslandica]
Length = 242
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 74/169 (43%), Gaps = 21/169 (12%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDM----KSGFAFIYMDDERDAEDAIRGLDRTE 112
++ GN D R+ DLE +F +YGK+ VD+ ++ FAFI +D RDA+DAIRG D
Sbjct: 11 VYVGNLPGDIRKRDLEDIFYKYGKLVDVDLHDRRETPFAFIEFEDPRDADDAIRGRDGYM 70
Query: 113 FGRKGRRLRVEW----------TKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYH 162
F G +LRVE GG + L + P
Sbjct: 71 F--DGYKLRVELPRSSPRYVGGRGGGGRGYYGGGRRDGYGRGGGRQSGHKLMITGLPPTG 128
Query: 163 TRTRDLERHFEPYGKIISVRIRRN----FAFVQYEVQEDATRALDATNM 207
+ +D++ HF G +I + R+ F +YE + A R LD +
Sbjct: 129 S-WQDIKDHFRQAGDVIYANVERDGTGVVEFARYEHAKRAVRDLDDSKF 176
>gi|116284263|gb|AAI24193.1| Zgc:55809 protein [Danio rerio]
Length = 284
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 38/56 (67%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLD 109
M ++ G + AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+
Sbjct: 1 MSRVYVGKLSHRAREKDVERFFKGYGKILEVDLKNGYGFVEFDDPRDADDAVYDLN 56
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 161 YHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLT-DRVI 215
+ R +D+ER F+ YGKI+ V ++ + FV+++ DA A+ N L RVI
Sbjct: 11 HRAREKDVERFFKGYGKILEVDLKNGYGFVEFDDPRDADDAVYDLNGKDLCGKRVI 66
>gi|115434616|ref|NP_001042066.1| Os01g0155600 [Oryza sativa Japonica Group]
gi|54290784|dbj|BAD61423.1| putative splicing factor [Oryza sativa Japonica Group]
gi|113531597|dbj|BAF03980.1| Os01g0155600 [Oryza sativa Japonica Group]
gi|125524487|gb|EAY72601.1| hypothetical protein OsI_00466 [Oryza sativa Indica Group]
gi|215765664|dbj|BAG87361.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 324
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G R DLE LF RYG+V VDMK FAF+ D RDA++A LD +F
Sbjct: 20 LYVGRLSSRTRTRDLEDLFGRYGRVRYVDMKHEFAFVEFSDARDADEARYNLDGRDF--D 77
Query: 117 GRRLRVEWTKHERGIRRPGGGS 138
G R+ VE+ K G+ R GGS
Sbjct: 78 GSRMIVEFAK---GVPRGPGGS 96
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 163 TRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
TRTRDLE F YG++ V ++ FAFV++ DA A + + VE+A
Sbjct: 29 TRTRDLEDLFGRYGRVRYVDMKHEFAFVEFSDARDADEARYNLDGRDFDGSRMIVEFA 86
>gi|348518702|ref|XP_003446870.1| PREDICTED: serine/arginine-rich splicing factor 1-like [Oreochromis
niloticus]
Length = 243
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 82/164 (50%), Gaps = 12/164 (7%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ G D
Sbjct: 18 IYVGNLPPDIRTKDVEDVFYKYGIIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRP----SKTLFVINFDPYHTRTRD 167
++ G RLRVE+ + RG R GGG + P P S+ +++ P +D
Sbjct: 78 DY--DGYRLRVEFPRSGRGGGRGGGGGALGTPRGRYGPPSRRSEYRVIVSGLPPSGSWQD 135
Query: 168 LERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
L+ H G + + R+ V++ +ED T A+ + +K
Sbjct: 136 LKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAIRKLDNTKF 179
>gi|158293128|ref|XP_314469.4| AGAP010496-PA [Anopheles gambiae str. PEST]
gi|157016810|gb|EAA09889.4| AGAP010496-PA [Anopheles gambiae str. PEST]
Length = 258
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 20/165 (12%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS----GFAFIYMDDERDAEDAIRGLDRTE 112
I+ GN D R D++ LF ++GKV VD+K+ FAF+ +D RDA+DA++ D +
Sbjct: 10 IYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPPFAFVEFEDARDADDAVKARDGYD 69
Query: 113 FGRKGRRLRVEWTK-----HERGIRRPGGGSSARRPSTNTRP-----SKTLFVINFDPYH 162
+ G RLRVE+ + RG R+ ++R N R S+ ++ P
Sbjct: 70 Y--DGYRLRVEFPRGGGPGSYRGSRQGNSDRNSRGGDRNNRGPPARRSQFRVMVTGLPSS 127
Query: 163 TRTRDLERHFEPYGKIISVRIRRN----FAFVQYEVQEDATRALD 203
+DL+ H G + + ++ F+++E + A + LD
Sbjct: 128 GSWQDLKDHMREAGDVCFADVYKDGTGVVEFLRHEDMKYAIKKLD 172
>gi|340378226|ref|XP_003387629.1| PREDICTED: serine/arginine-rich splicing factor 4-like [Amphimedon
queenslandica]
Length = 309
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
I+ G Y AR+ D+ER FR +G++ +++K+GF F+ DD RDAEDA+ L E
Sbjct: 7 IYIGRLPYQAREKDVERFFRGFGRIRDINLKNGFGFVEFDDYRDAEDAVYELHGREL--L 64
Query: 117 GRRLRVE 123
G R+ VE
Sbjct: 65 GERVIVE 71
>gi|308509716|ref|XP_003117041.1| CRE-RSP-1 protein [Caenorhabditis remanei]
gi|308241955|gb|EFO85907.1| CRE-RSP-1 protein [Caenorhabditis remanei]
Length = 308
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 112
M I+ G + D+E FR YG++ V +K+GF F+ DD+RDAEDA+ L+ E
Sbjct: 1 MAARIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKE 60
Query: 113 FGRKGRRLRVEWTK 126
G G R+ ++++K
Sbjct: 61 LG--GERVILDYSK 72
>gi|452820198|gb|EME27244.1| splice factor, putative isoform 1 [Galdieria sulphuraria]
Length = 388
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
+F GN + +L+ LF +YGK R+D+K GF F+ D+E +A+DA+ L + G
Sbjct: 3 LFVGNVSSSVSKRELQDLFEKYGKC-RIDLKRGFMFVDYDEEAEAKDALESLQGKQVG-- 59
Query: 117 GRRLRVEWT 125
G ++ VEW+
Sbjct: 60 GLKINVEWS 68
>gi|260819154|ref|XP_002604902.1| hypothetical protein BRAFLDRAFT_114372 [Branchiostoma floridae]
gi|229290231|gb|EEN60912.1| hypothetical protein BRAFLDRAFT_114372 [Branchiostoma floridae]
Length = 289
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y AR+ D+ER FR YG++ +++K+GF F+ DD RDA+DA+ L+ E
Sbjct: 5 VYIGRLPYHAREKDVERFFRGYGRIREINLKNGFGFVEFDDPRDADDAVYELNGKELC-- 62
Query: 117 GRRLRVE 123
G R+ VE
Sbjct: 63 GERVIVE 69
>gi|350646485|emb|CCD58884.1| arginine/serine-rich splicing factor, putative [Schistosoma
mansoni]
Length = 207
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 71/157 (45%), Gaps = 18/157 (11%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG------FAFIYMDDERDAEDAIRGLDR 110
I+ GN D + D+E LF +YG + +D+K+G FAF+ +DE DA DA+RG D
Sbjct: 8 IYVGNLPPDTKTRDIENLFSKYGPIAAIDLKAGQRRGPPFAFVEFEDELDASDAVRGRDG 67
Query: 111 TEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLER 170
F G LRVE R G S +R S ++ P +DL+
Sbjct: 68 YNF--DGYALRVELP------RTGGFNRGGGGASGPSRRSDFRVIVTGLPPTGSWQDLKD 119
Query: 171 HFEPYGKIISVRIRRN----FAFVQYEVQEDATRALD 203
H G + + R+ F++YE + A R LD
Sbjct: 120 HMREAGDVGYADVFRDGTGVVEFLRYEDMKYAIRRLD 156
>gi|221130958|ref|XP_002164143.1| PREDICTED: serine/arginine-rich splicing factor 4-like isoform 2
[Hydra magnipapillata]
Length = 264
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 81/177 (45%), Gaps = 23/177 (12%)
Query: 57 IFCGNFEYDARQSDLERLFRRYG--KVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFG 114
IF G +AR DLE F+ G ++ V++K G+AF+ +D+RDA+DA+ LDR EF
Sbjct: 12 IFVGRLNPEARVRDLENFFKDNGFSRLKDVNIKLGYAFVEFEDKRDADDAVYELDRKEFF 71
Query: 115 RKGRRLRVEWTKH--------ERGIRRPGGGSSARRPSTNTRPSKT---LFVINFDPYHT 163
G RL VE KH G RR G + R RP T L V N
Sbjct: 72 --GSRLTVEHAKHGPRADMDKRDGDRRKGHENDRGRG----RPYNTEWRLIVTNLSS-RV 124
Query: 164 RTRDLERHFEPYGKIISVRI---RRNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
DL+ +F G++ + R V++ + RAL + S+ DR I +
Sbjct: 125 GWMDLKDYFRSAGEVTFTKANKERVGEGVVEFRSYREMKRALKKFDGSEFFDRRIKL 181
>gi|390352206|ref|XP_798746.2| PREDICTED: serine/arginine-rich splicing factor 4-like isoform 2
[Strongylocentrotus purpuratus]
Length = 349
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 5/74 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y AR+ D+ER FR +G++ +++K+GF F+ +D RDA+DA+ L+ E
Sbjct: 44 VYVGRLSYQARERDVERFFRGFGRIREINLKNGFGFVEFEDYRDADDAVYELNGKEL--V 101
Query: 117 GRRLRVEWTKHERG 130
G R+ +E H RG
Sbjct: 102 GERVIIE---HARG 112
>gi|422295771|gb|EKU23070.1| arginine serine-rich splicing factor [Nannochloropsis gaditana
CCMP526]
Length = 1161
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 88/195 (45%), Gaps = 28/195 (14%)
Query: 47 IAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM-----KSGFAFIYMDDERDA 101
+AA E+ R ++ GN ++ L F+ YG ++ V + + F++ D +A
Sbjct: 364 VAAGESGSRHVYVGNLPNGVKEEHLREAFKAYGGIESVRLLRRTAQCMTGFLHFKDAAEA 423
Query: 102 EDAIRGLDRTEF--GRKGRR-LRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINF 158
A + LDR F G R+ +++++ RG N +P +++ V N
Sbjct: 424 IRAKKELDRKPFVAGHLPRQVMKIQY--QSRG---------------NNKPCRSIRVHNL 466
Query: 159 DPYHTRTRDLERHFEPYGKIISVRIRRN--FAFVQYEVQEDATRALDATNMSKLTDRVIS 216
P R DL F +G+++ V I N AF+ E E A +A+ + + R +
Sbjct: 467 -PVGVRETDLSELFGAFGRVMIVVINTNSNIAFLSLETVEQAEQAMARWHDQEWRGRHLF 525
Query: 217 VEYAVRDDDDRRNGH 231
++YA+R+ + + H
Sbjct: 526 LDYALRETISKEDPH 540
>gi|324507194|gb|ADY43052.1| Serine/arginine-rich splicing factor 4 [Ascaris suum]
Length = 360
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLD-RTEFGR 115
++ G + A++ D+ER FR YG + V MK+G+AF+ D RDA+DA+R L+ R+ F
Sbjct: 5 VYVGRLSFRAQERDVERFFRGYGHISEVLMKNGYAFVEFTDYRDADDAVRDLNGRSLF-- 62
Query: 116 KGRRLRVEWTK 126
G R+ VE K
Sbjct: 63 -GDRVIVELAK 72
>gi|221130960|ref|XP_002164119.1| PREDICTED: serine/arginine-rich splicing factor 4-like isoform 1
[Hydra magnipapillata]
Length = 264
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 81/177 (45%), Gaps = 23/177 (12%)
Query: 57 IFCGNFEYDARQSDLERLFRRYG--KVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFG 114
IF G +AR DLE F+ G ++ V++K G+AF+ +D+RDA+DA+ LDR EF
Sbjct: 12 IFVGRLNPEARVRDLENFFKDNGFSRLKDVNIKLGYAFVEFEDKRDADDAVYELDRKEFF 71
Query: 115 RKGRRLRVEWTKHERGIRRPG--------GGSSARRPSTNTRPSKT---LFVINFDPYHT 163
G R+ VE H G R G GG S R RP T L V N
Sbjct: 72 --GSRITVE---HATGTARGGDTRGERDRGGYSVRERGRG-RPYNTEWRLIVTNLSS-RV 124
Query: 164 RTRDLERHFEPYGKIISVRI---RRNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
DL+ +F G++ + R V++ + RAL + S+ DR I +
Sbjct: 125 GWMDLKDYFRSAGEVTFTKANKERVGEGVVEFRSYREMKRALKKFDGSEFFDRRIKL 181
>gi|357631525|gb|EHJ78995.1| hypothetical protein KGM_15683 [Danaus plexippus]
Length = 249
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 98/217 (45%), Gaps = 20/217 (9%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS----GFAFIYMDDERDAEDAIRGLDRTE 112
I+ GN D R D++ LF ++GKV VD+K+ FAF+ +D RDA+DA+R D +
Sbjct: 14 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFEDPRDADDAVRARDGYD 73
Query: 113 FGRKGRRLRVEWTKHERGIRRPGGGSSAR---RPSTNTRP---SKTLFVINFDPYHTRTR 166
+ G RLRVE+ + G R G R RP+ P S+ ++ P +
Sbjct: 74 Y--DGYRLRVEFPRGGGGGARGGRSQPDRFGPRPAARGPPARRSEYRVLVTGLPPSGSWQ 131
Query: 167 DLERHFEPYGKIISV-RIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA-VRDD 224
DL+ H G + + V++ ED A+ + S+ V Y V++D
Sbjct: 132 DLKDHMREAGDVCFADTFKDGTGVVEFLRHEDMKYAVKKLDDSRFRSHEGEVSYIRVKED 191
Query: 225 DDRRNGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDY 261
RDRSP+ ++ SP RGSP Y
Sbjct: 192 ---YGSGGGGGLRDRSPE---YQAGSPSYTRRGSPSY 222
>gi|357112280|ref|XP_003557937.1| PREDICTED: pre-mRNA-splicing factor SF2-like [Brachypodium
distachyon]
Length = 289
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 76/179 (42%), Gaps = 32/179 (17%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG++ +D+K G+AF+ +D RDAEDA G D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPST--------------NTRPSKTLFV 155
F G RLRVE RG GG S R S+ +R + +
Sbjct: 67 GYNF--DGNRLRVEPAHGGRG----SGGPSHDRSSSFGGGGGGGGGGRRGVSRHTDYRVL 120
Query: 156 INFDPYHTRTRDLERHFEPYGKIISVRIRRN-------FAFVQYEVQEDATRALDATNM 207
+ P +DL+ H G + + R + Y+ + A + LD T
Sbjct: 121 VTGLPSSASWQDLKDHMRRAGDVCFSEVYREGSGTTGIVDYTNYDDMKYAIKKLDDTEF 179
>gi|321261800|ref|XP_003195619.1| polyadenylate-binding protein [Cryptococcus gattii WM276]
gi|317462093|gb|ADV23832.1| polyadenylate-binding protein, putative [Cryptococcus gattii WM276]
Length = 675
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 77/180 (42%), Gaps = 32/180 (17%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDAIRGL 108
++ G + ++ L +F G V D V +S G+A++ + D E A+ L
Sbjct: 50 LYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 109
Query: 109 DRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDL 168
+ + KG+ R+ W++ + +R+ G G+ +F+ N D + L
Sbjct: 110 NYSLI--KGQSCRIMWSQRDPALRKTGQGN--------------IFIKNLD-QSIDNKAL 152
Query: 169 ERHFEPYGKIISVRI-------RRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
F +G I+S ++ R FAFV Y E A A+ A N L D+ + V + V
Sbjct: 153 HDTFAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHV 212
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 91/391 (23%), Positives = 148/391 (37%), Gaps = 55/391 (14%)
Query: 31 RRLYVLGFRRSHSQLS-IAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-- 87
+++YV +LS + A ++ N + + ++ E L + +G V +
Sbjct: 204 KKVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRD 263
Query: 88 -----SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARR 142
GF F+ ++ A+ A+ L+ E K TK ER R
Sbjct: 264 EQGVSKGFGFVNYENHESAKQAVDELNEKEINGKKLYAGRAQTKSEREAELKKSHEEKRI 323
Query: 143 PSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN-------FAFVQYEVQ 195
+ L++ N D R L FE +G I S ++ R+ F FV Y
Sbjct: 324 ENEAKSAGVNLYIKNLDDEWDDDR-LRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSP 382
Query: 196 EDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSPDRNRDRSPDRGRRRSPSP-YRR 254
++AT+A+ N + + + V A R D R+ S + R+ R + + P +
Sbjct: 383 DEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQALES--QIAQRAQQRMQYGAGFPGMQG 440
Query: 255 ERGSPDYG---------------------RGSSRSPYRRERGSPDYGRVRSPSPYRRDRG 293
G P YG G +P + P + P P G
Sbjct: 441 YMGQPMYGYPPMPGYGQPMPGMPPVRGPMMGYPGAPQNMMQSRPRFNPNGQPLP----GG 496
Query: 294 SPDYGRNSSRSPYKKERAAIGHGR--GPSRSPYRRDRGSPENGHGSSPSPYRKGKPS--- 348
P YG + PY A G+ G +R P + P NG G SP +G P+
Sbjct: 497 VPAYGM-PPQVPYP---GAPGYPVRPGGARIPAAPNANGPRNG-GPSPVGAPQGLPAGSI 551
Query: 349 PNNGRGPSRSPYERERPSPENGRGGSRSPYR 379
P G+ P+R P+E+ P+P+ GR ++S R
Sbjct: 552 PRGGQMPAR-PHEQAAPAPQAGRLDAQSLAR 581
Score = 38.5 bits (88), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 11/103 (10%)
Query: 150 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN--------FAFVQYEVQEDATRA 201
S +L+V DP T E F G + S+R+ R+ +A+V Y D RA
Sbjct: 47 SASLYVGELDPSVTEAMLFEI-FNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERA 105
Query: 202 LDATNMSKLTDRVISVEYAVRDDDDRRNGHSP--DRNRDRSPD 242
L+ N S + + + ++ RD R+ G +N D+S D
Sbjct: 106 LEHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSID 148
>gi|159155810|gb|AAI54584.1| Zgc:77449 protein [Danio rerio]
Length = 246
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG-----FAFIYMDDERDAEDAIRGLDRT 111
I+ GN D ++ D+E LF +YGK+ +++K+ FAF+ +D RDAEDA+ G R
Sbjct: 6 IYVGNLPMDVQERDIEDLFFKYGKIRDIELKNNRSTIPFAFVRFEDPRDAEDAVFG--RN 63
Query: 112 EFGRKGRRLRVEWTKHE------RGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRT 165
+G +LRVE+ + GGG R TR S+ ++ P
Sbjct: 64 GYGFGDCKLRVEYPRSSGSKFSGPAGGGGGGGGPRGRFGPPTRRSEFRVIVTGLPPTGSW 123
Query: 166 RDLERHFEPYGKIISVRIRRN----FAFVQYEVQEDATRALDATNM 207
+DL+ H G + ++R+ F++ E E A R LD+T
Sbjct: 124 QDLKDHMREAGDVCFADVQRDGEGVVEFLRREDMEYALRRLDSTEF 169
>gi|363807264|ref|NP_001242616.1| uncharacterized protein LOC100813237 [Glycine max]
gi|255647309|gb|ACU24121.1| unknown [Glycine max]
Length = 299
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G R DLER+F RYG+V VDMK+ FAF+ D RDA+DA LD + +
Sbjct: 13 LYVGRLSSRTRSRDLERVFSRYGRVRGVDMKNDFAFVEFSDPRDADDARYNLDGRDV--E 70
Query: 117 GRRLRVEWTK 126
G R+ VE+ K
Sbjct: 71 GSRIIVEFAK 80
>gi|52345494|ref|NP_001004795.1| serine/arginine-rich splicing factor 9 [Xenopus (Silurana)
tropicalis]
gi|49257722|gb|AAH74531.1| splicing factor, arginine/serine-rich 9 [Xenopus (Silurana)
tropicalis]
gi|89272901|emb|CAJ83204.1| splicing factor, arginine/serine-rich 9 [Xenopus (Silurana)
tropicalis]
Length = 225
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 77/162 (47%), Gaps = 14/162 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLD 109
I+ GN D R+ +LE LF RYG++ +++K + FAFI D RDAEDA+ +
Sbjct: 18 IYVGNLPADIREKELEDLFDRYGRIRTIELKNRGGSSAAPFAFISFQDPRDAEDAVFARN 77
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLE 169
EFG RLRVE+ + RG GGS R + R + V P + +DL+
Sbjct: 78 GYEFGSC--RLRVEFPRSFRGSGGGYGGSRGRNGPPSRRSEYRVIVSGLPPSGS-WQDLK 134
Query: 170 RHFEPYGKIISVRIRRN----FAFVQYEVQEDATRALDATNM 207
H G + + ++ F++ E E A R LD T
Sbjct: 135 DHMREAGDVCYADVHKDGMGIVEFIRKEDMEYALRKLDDTKF 176
>gi|226504020|ref|NP_001150424.1| pre-mRNA-splicing factor SF2 [Zea mays]
gi|195639150|gb|ACG39043.1| pre-mRNA-splicing factor SF2 [Zea mays]
Length = 263
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG++ +D+K G+AF+ +D RDA+DAI G D
Sbjct: 10 RTIYVGNLPGDIREREVEDLFYKYGRILDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRD 69
Query: 110 RTEFGRKGRRLRVEWTKHERG 130
F G RLRVE RG
Sbjct: 70 GYNF--DGYRLRVELAHGGRG 88
>gi|76573323|gb|ABA46766.1| pre-mRNA splicing factor-like protein [Solanum tuberosum]
Length = 269
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 74/178 (41%), Gaps = 30/178 (16%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D ++ ++E LF +YG++ +++K + F+ + RDAEDAIRG D
Sbjct: 7 RSIYVGNLPADIKELEVEDLFYKYGRILDIELKIPPRPPCYCFVEFESSRDAEDAIRGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRP-------------SKTLFVI 156
F G RLRVE RG P S R ++ S +I
Sbjct: 67 GYNF--DGCRLRVELAHGGRG---PSSSSDRRGSYGSSGGGGGGGGRHGISRHSDYRVII 121
Query: 157 NFDPYHTRTRDLERHFEPYGKIISVRIRRN----FAFVQYEVQED---ATRALDATNM 207
P +DL+ H G + + R+ F V Y ED A R LD T
Sbjct: 122 RGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNYEDMKYAIRKLDDTEF 179
>gi|356572371|ref|XP_003554342.1| PREDICTED: uncharacterized protein LOC100789337 [Glycine max]
Length = 297
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G R DLER+F RYG++ VDMK+ FAF+ D RDA+DA LD + +
Sbjct: 13 LYVGRLSSRTRSRDLERVFSRYGRIRGVDMKNDFAFVEFSDPRDADDARYSLDGRDV--E 70
Query: 117 GRRLRVEWTK 126
G R+ VE+ K
Sbjct: 71 GSRIIVEFAK 80
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 163 TRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
TR+RDLER F YG+I V ++ +FAFV++ DA A + + + I VE+A
Sbjct: 22 TRSRDLERVFSRYGRIRGVDMKNDFAFVEFSDPRDADDARYSLDGRDVEGSRIIVEFA 79
>gi|84998374|ref|XP_953908.1| splicing factor (SR protein) [Theileria annulata]
gi|65304906|emb|CAI73231.1| splicing factor (SR protein), putative [Theileria annulata]
Length = 341
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 79/181 (43%), Gaps = 15/181 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG-------FAFIYMDDERDAEDAIRGLD 109
+F GN + D+ LF ++G++ VD+K G +AFI R AEDA+ D
Sbjct: 15 VFVGNLPDRVDERDIHDLFDKFGEIKDVDIKHGKTSNYTSYAFIEFASVRSAEDAVDSRD 74
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN-----TRPSKTLFVINFDPYHTR 164
E+ R RLRVE+ ++ R P R +N TR L + N P+ R
Sbjct: 75 GYEYDRY--RLRVEFAGEKKPRRYPSYDRPRDRDRSNRYPPPTRTDYRLVISNL-PHGCR 131
Query: 165 TRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDD 224
+ L+ H G + V I FV Y + D A+ + S+LT S V+ D
Sbjct: 132 WQHLKDHMRKAGPVGYVNIVHGKGFVDYMHKSDMKYAIRKLDGSELTTPDDSCRIRVKKD 191
Query: 225 D 225
+
Sbjct: 192 E 192
>gi|405122394|gb|AFR97161.1| polyadenylate-binding protein [Cryptococcus neoformans var. grubii
H99]
Length = 670
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 77/180 (42%), Gaps = 32/180 (17%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDAIRGL 108
++ G + ++ L +F G V D V +S G+A++ + D E A+ L
Sbjct: 50 LYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 109
Query: 109 DRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDL 168
+ + KG+ R+ W++ + +R+ G G+ +F+ N D + L
Sbjct: 110 NYSLI--KGQSCRIMWSQRDPALRKTGQGN--------------IFIKNLD-QSIDNKAL 152
Query: 169 ERHFEPYGKIISVRI-------RRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
F +G I+S ++ R FAFV Y E A A+ A N L D+ + V + V
Sbjct: 153 HDTFAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHV 212
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 91/391 (23%), Positives = 146/391 (37%), Gaps = 55/391 (14%)
Query: 31 RRLYVLGFRRSHSQLS-IAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-- 87
+++YV +LS + A ++ N + + ++ E L + +G V +
Sbjct: 204 KKVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRD 263
Query: 88 -----SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARR 142
GF F+ + A A+ L+ E K TK ER R
Sbjct: 264 EKGVSKGFGFVNYEHHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRL 323
Query: 143 PSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN-------FAFVQYEVQ 195
+ L++ N D R L FE +G I S ++ R+ F FV Y
Sbjct: 324 ENEAKSAGVNLYIKNLDDEWDDDR-LRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSP 382
Query: 196 EDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSPDRNRDRSPDRGRRRSPSP-YRR 254
++AT+A+ N + + + V A R D R+ S + R+ R + + P +
Sbjct: 383 DEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQALES--QIAQRAQQRMQYGTGFPGMQG 440
Query: 255 ERGSPDYG---------------------RGSSRSPYRRERGSPDYGRVRSPSPYRRDRG 293
G P YG G +P + P + P P G
Sbjct: 441 YMGQPMYGYPPMPGYGQPMPGMPPVRGPMMGYPGAPQNMMQSRPRFNPNGQPLP----GG 496
Query: 294 SPDYGRNSSRSPYKKERAAIGHGR--GPSRSPYRRDRGSPENGHGSSPSPYRKGKPS--- 348
P YG + PY A G+ G +R P + P NG G SP +G P+
Sbjct: 497 VPAYGM-PPQVPYP---GAPGYPVRPGGARIPAAPNANGPRNG-GPSPVGAPQGLPAGSM 551
Query: 349 PNNGRGPSRSPYERERPSPENGRGGSRSPYR 379
P G+ P+R P+E+ P+P+ GR ++S R
Sbjct: 552 PRGGQMPAR-PHEQAAPAPQAGRLDAQSLAR 581
>gi|399219025|emb|CCF75912.1| unnamed protein product [Babesia microti strain RI]
Length = 227
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 66/127 (51%), Gaps = 16/127 (12%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG-----FAFIYMDDERDAEDAIRGLDRT 111
++ GN + Q ++E F ++GK+ R D+K G FAF+ +D RDA+DAI+ D
Sbjct: 10 VYVGNLPSECDQREIEEEFEKFGKIKRCDVKRGANGSSFAFVEFEDPRDAKDAIKEKDGY 69
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERH 171
EF KG RLRVE +RG R RRP T R T+ V+ P + +DL+ H
Sbjct: 70 EF--KGSRLRVEVPFSDRGYSR-------RRP-TPRRGHYTVEVLGLPPSGS-WQDLKDH 118
Query: 172 FEPYGKI 178
G+
Sbjct: 119 MRDAGEC 125
>gi|356566197|ref|XP_003551321.1| PREDICTED: uncharacterized protein LOC100808038 [Glycine max]
Length = 364
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 55/120 (45%), Gaps = 24/120 (20%)
Query: 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI--------RRNFAFVQYEVQEDATR 200
P L+V P T+ R+LE+HF GK+I V + R F FV E E+A R
Sbjct: 48 PGNNLYVTGLSPRITK-RELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMETLEEAER 106
Query: 201 ALDATNMSKLTDRVISVEYAVRDDDDRRNGHSPD----------RNRDRSPDRGRRRSPS 250
+ N S L RVI+VE A RR G +P R R RSP RRSPS
Sbjct: 107 CVKYLNRSVLEGRVITVEKA-----KRRRGRTPTPGRYLGLRTIRARRRSPSYSPRRSPS 161
>gi|255564164|ref|XP_002523079.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
gi|223537641|gb|EEF39264.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
Length = 292
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R ++ GN D R+ ++E LF +YG + +D+K G+AF+ ++ RDAEDAIRG D
Sbjct: 7 RTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERG 130
+F G +LRVE RG
Sbjct: 67 GYDF--DGHQLRVELAHGGRG 85
>gi|330840365|ref|XP_003292187.1| hypothetical protein DICPUDRAFT_99253 [Dictyostelium purpureum]
gi|325077575|gb|EGC31278.1| hypothetical protein DICPUDRAFT_99253 [Dictyostelium purpureum]
Length = 288
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M I+ G DAR+ D+ F ++GK+D+++++ GF F+ D+ A+DAI ++ F
Sbjct: 1 MSKIYIGRLSNDARREDILNRFSKFGKIDKLELRKGFCFVEYLDKNAADDAINSENKQFF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGG 136
GR + VE + RGI++ G
Sbjct: 61 --LGRDIVVELSNSSRGIKKDIG 81
>gi|1049088|gb|AAA93073.1| SRp55-1 [Homo sapiens]
Length = 344
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y+ R+ D++R F YG++ VD+K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELC-- 61
Query: 117 GRRLRVEWTKHERGIRR 133
G + VE H RG RR
Sbjct: 62 GEHVIVE---HARGPRR 75
>gi|392595814|gb|EIW85137.1| polyadenylate binding protein [Coniophora puteana RWD-64-598 SS2]
Length = 683
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 87/208 (41%), Gaps = 23/208 (11%)
Query: 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAE 102
+A ++ N + + Q + E LF RYG V ++ GF F+ + +A+
Sbjct: 221 MKAQFTNLYIKNLDTEVTQEEFEELFNRYGSVTSAIVQVDDEGRSKGFGFVNYESHEEAQ 280
Query: 103 DAIRGLDRTEFGRKGRRLRV----EWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINF 158
A+ L T+ KG++L V + + E +RR A+ + L+V N
Sbjct: 281 AAVDNLHDTDL--KGKKLYVTRAQKKAEREEELRR--SYEQAKMEKLSKYQGVNLYVKNL 336
Query: 159 DPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLT 211
+ L FEP+G I S ++ + F FV + ++AT+A+ N +
Sbjct: 337 ED-DVDDDKLRAEFEPFGTITSCKVMSDEKGSSKGFGFVCFSSPDEATKAIAEMNNKMIG 395
Query: 212 DRVISVEYAVRDDDDRRNGHSPDRNRDR 239
+ + V A R + R+ S R++
Sbjct: 396 SKPLYVSLAQRREVRRQQLESQIAQRNQ 423
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 32/176 (18%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDAIRGL 108
++ G + ++ + +F G V D V +S G+A++ + D E A+ L
Sbjct: 47 LYVGELDPTVTEAMIFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNTADGERALEQL 106
Query: 109 DRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDL 168
+ + KGR R+ W++ + +R+ G G+ +F+ N D + L
Sbjct: 107 NYSLI--KGRPCRIMWSQRDPALRKTGQGN--------------IFIKNLDE-QIDNKAL 149
Query: 169 ERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
F +G ++S ++ + + FV YE E A A+ A N L D+ + V
Sbjct: 150 HDTFVAFGNVLSCKVATDEQGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYV 205
Score = 41.2 bits (95), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Query: 142 RPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN--------FAFVQYE 193
+ S ++ PS +L+V DP T E F G + S+R+ R+ +A+V Y
Sbjct: 36 QTSISSAPSASLYVGELDPTVTEAMIFEI-FNMIGPVASIRVCRDAVTRRSLGYAYVNYL 94
Query: 194 VQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGH 231
D RAL+ N S + R + ++ RD R+ G
Sbjct: 95 NTADGERALEQLNYSLIKGRPCRIMWSQRDPALRKTGQ 132
>gi|290562251|gb|ADD38522.1| Serine-arginine protein 55 [Lepeophtheirus salmonis]
Length = 331
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG-FAFIYMDDERDAEDAIRGLDRTEFGR 115
+F GN Y R+ D+ER F RYG+V + +KSG + F DD RDA+DA+ L+ E
Sbjct: 9 VFLGNLPYSVRERDIERFFERYGRVYNIFIKSGKYGFCEFDDYRDADDAVYKLNGCELNS 68
Query: 116 KGRRLRVEWTKHERGIRR 133
+ R+ VE H RG RR
Sbjct: 69 E--RITVE---HARGGRR 81
>gi|225712276|gb|ACO11984.1| Serine-arginine protein 55 [Lepeophtheirus salmonis]
Length = 329
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG-FAFIYMDDERDAEDAIRGLDRTEFGR 115
+F GN Y R+ D+ER F RYG+V + +KSG + F DD RDA+DA+ L+ E
Sbjct: 9 VFLGNLPYSVRERDIERFFERYGRVYNIFIKSGKYGFCEFDDYRDADDAVYKLNGCELNS 68
Query: 116 KGRRLRVEWTKHERGIRR 133
+ R+ VE H RG RR
Sbjct: 69 E--RITVE---HARGGRR 81
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 147 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRR-NFAFVQYEVQEDATRALDAT 205
+R +F+ N PY R RD+ER FE YG++ ++ I+ + F +++ DA A+
Sbjct: 3 SREGCRVFLGNL-PYSVRERDIERFFERYGRVYNIFIKSGKYGFCEFDDYRDADDAVYKL 61
Query: 206 NMSKLTDRVISVEYA 220
N +L I+VE+A
Sbjct: 62 NGCELNSERITVEHA 76
>gi|303317336|ref|XP_003068670.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240108351|gb|EER26525.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 300
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 96/226 (42%), Gaps = 34/226 (15%)
Query: 57 IFCGNFEYDARQSDLERLFRRYG--KVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFG 114
++ GN + + D+E F ++G K+ + + SGF FI +D DA D + D T+F
Sbjct: 9 LYLGNLPRNVTKQDVEEHFNQHGSGKITDIKLMSGFGFIEYEDALDARDVV--PDGTDF- 65
Query: 115 RKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPY-HTRTRDLERHFE 173
KG RL V++ RG R S S RP +T + + T +DL+
Sbjct: 66 -KGSRLTVQFA---RGPRHKETFSGPSDRSNAPRPRRTPYRMQISGLPETSWQDLKDFAR 121
Query: 174 PYGKII----SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDD--- 226
G + ++R FV++E D A++ + + ++ ++ DD
Sbjct: 122 QSGLDVVYSETLRDHEGRGFVEFETGADLKTAIEKLDGREFKGSRVTCTQDIQAPDDRPV 181
Query: 227 ----------RRNGHSPDRNRDRSPDRG-------RRRSPSPYRRE 255
RR G+ P + DR P RG R RSP P RR+
Sbjct: 182 RDPYRSRSPVRRGGYPPMDDYDRRPPRGYSPRGHYRERSPPPMRRD 227
>gi|172046470|emb|CAQ34907.1| ASF/SF2 protein [Chironomus tentans]
Length = 246
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 78/171 (45%), Gaps = 33/171 (19%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG----FAFIYMDDERDAEDAIRGLDRTE 112
I+ GN D R D+E LF R+GKV VD+K+ F F+ +D RDA DA++ R+
Sbjct: 11 IYVGNLPPDIRTKDVEDLFFRFGKVSFVDLKNRRGPPFVFVEFEDHRDASDAVKA--RSN 68
Query: 113 FGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN----------------TRPSKTLFVI 156
+ G +LRVE+ R GG S+ R +N R S+ ++
Sbjct: 69 YDYDGYKLRVEFP-------RGGGPGSSYRGRSNNDRGGSGRGGGNNRPAARRSQYRVLV 121
Query: 157 NFDPYHTRTRDLERHFEPYGKIISVRIRRN----FAFVQYEVQEDATRALD 203
+ P +DL+ H G + + ++ F++YE + A + LD
Sbjct: 122 SGLPSSGSWQDLKDHMREAGDVCFADVYKDGTGVVEFLRYEDMKYAIKKLD 172
>gi|71033489|ref|XP_766386.1| hypothetical protein [Theileria parva strain Muguga]
gi|68353343|gb|EAN34103.1| hypothetical protein TP01_0865 [Theileria parva]
Length = 343
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG-------FAFIYMDDERDAEDAIRGLD 109
+F GN + D++ LF ++G++ +D+K G +AFI R AEDA+ D
Sbjct: 15 VFVGNLPDRVDERDIQDLFDKFGEIKDIDIKHGKTSNYTSYAFIEFASVRSAEDAVDSRD 74
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN-----TRPSKTLFVINFDPYHTR 164
E+ R RLRVE+ +R R P R +N TR L + N P+ R
Sbjct: 75 GYEYDRY--RLRVEFAGEKRPRRYPSYERPRDRDRSNRYPPPTRTDYRLVISNL-PHGCR 131
Query: 165 TRDLERHFEPYGKIISVRIRRNFAFVQYEVQED---ATRALDATNMS 208
+ L+ H G + V I FV + + D A R LD + +S
Sbjct: 132 WQHLKDHMRKAGPVGYVNIVHGKGFVDFLHKSDMKYAIRKLDGSELS 178
>gi|336364894|gb|EGN93247.1| hypothetical protein SERLA73DRAFT_172163 [Serpula lacrymans var.
lacrymans S7.3]
Length = 684
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 84/361 (23%), Positives = 134/361 (37%), Gaps = 56/361 (15%)
Query: 31 RRLYV-LGFRRSHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYG-------KVD 82
+++YV R Q + +A ++ N + Q + E +F++YG +VD
Sbjct: 200 KKVYVGYHISRKERQSKLDEMKAQFTNLYIKNLDTSVTQDEFEEMFQKYGNVTSAIVQVD 259
Query: 83 RVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV----EWTKHERGIRRPGGGS 138
GF F+ + +A+ A+ L T+ +G++L V + + E +RR
Sbjct: 260 EEGNSKGFGFVNYEHHEEAQSAVDALHDTDI--RGKKLFVSRAQKKAEREEELRR--SYE 315
Query: 139 SARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN-------FAFVQ 191
A+ + L++ N + L FEP+G I S ++ R+ F FV
Sbjct: 316 QAKMEKLSKYQGVNLYIKNLED-DVDDEKLRAEFEPFGTITSCKVMRDDKSTSKGFGFVC 374
Query: 192 YEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHS--PDRNRDRSPDRGRRRSP 249
+ ++AT+A+ N + + + V A R + R+ S RN+ R P
Sbjct: 375 FSSPDEATKAVAEMNNKMIGSKPLYVSLAQRREVRRQQLESQIAQRNQIRMQQAAAAGIP 434
Query: 250 SPYRRERGSPDY---GRGSSRSPYRRERGSPDYGRVRSPSPYRRDRGSPDYGRNSSRSPY 306
Y P Y G GS R G YG+ P
Sbjct: 435 GGYIN---GPMYYPPGPGSFPPQGRNMMG---------------------YGQPGMLPP- 469
Query: 307 KKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPS 366
+ R G+G+ P P G P +G P R G P P RGP SP P
Sbjct: 470 -RPRYPAGNGQVPGGMPIP-PYGQPPQSYGGMPGYPRGGAPRPPVARGPGSSPTNPNAPI 527
Query: 367 P 367
P
Sbjct: 528 P 528
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Query: 153 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN--------FAFVQYEVQEDATRALDA 204
L+V DP T E F G + S+R+ R+ +A+V Y D RAL+
Sbjct: 46 LYVGELDPTVTEAMLFEI-FNMIGPVASIRVCRDAVTRRSLGYAYVNYLNTSDGERALEQ 104
Query: 205 TNMSKLTDRVISVEYAVRDDDDRRNGH 231
N S + +R + ++ RD R+ G
Sbjct: 105 LNYSLIKNRACRIMWSQRDPALRKTGQ 131
>gi|395333502|gb|EJF65879.1| polyadenylate binding protein [Dichomitus squalens LYAD-421 SS1]
Length = 664
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 90/212 (42%), Gaps = 19/212 (8%)
Query: 44 QLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-------GFAFIYMD 96
Q + +A I+ N + + Q D +LF ++G V +++ GF F+ +
Sbjct: 218 QSKLEEMKAQFTNIYVKNLDPEVTQDDFVKLFEQFGNVTSAVIQTDEQGQSRGFGFVNFE 277
Query: 97 DERDAEDAIRGLDRTEFGRKGRRLRV--EWTKHERGIRRPGGGSSARRPSTNTRPSKTLF 154
+A+ A+ L +E+ GR+L V K ER A+ + L+
Sbjct: 278 THEEAQKAVETLHDSEY--HGRKLFVSRAQKKAEREEELRKSYEQAKVEKMSKYQGVNLY 335
Query: 155 VINFDPYHTRTRDLERHFEPYGKIISVRIRRN-------FAFVQYEVQEDATRALDATNM 207
+ N + R L + FEP+G I S ++ R+ F FV + ++AT+A+ N
Sbjct: 336 IKNLEDDIDDER-LRQEFEPFGSITSAKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNN 394
Query: 208 SKLTDRVISVEYAVRDDDDRRNGHSPDRNRDR 239
+ + + V A R + R+ S R++
Sbjct: 395 KMIGSKPLYVSLAQRREVRRQQLESQIAQRNQ 426
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 77/180 (42%), Gaps = 32/180 (17%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDAIRGL 108
++ G + ++ L +F G V D V +S G+A++ + D E A+ L
Sbjct: 46 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 105
Query: 109 DRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDL 168
+ + KGR R+ W++ + +R+ G G+ +F+ N D + L
Sbjct: 106 NYSLI--KGRACRIMWSQRDPALRKTGQGN--------------IFIKNLDE-QIDNKAL 148
Query: 169 ERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
F +G ++S ++ + + FV YE E A A+ A N L D+ + V + +
Sbjct: 149 HDTFAAFGNVLSCKVATDEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHI 208
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 72/184 (39%), Gaps = 39/184 (21%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-------GFAFIYMDDERDAEDAIRGLD 109
IF N + L F +G V + + G+ F++ + AE AI+ ++
Sbjct: 134 IFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGRSKGYGFVHYETAEAAETAIKAVN 193
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKT---------LFVINFDP 160
K + G +R+ S+ R SK ++V N DP
Sbjct: 194 GMLLNDKKVYV---------------GHHISRKASSRERQSKLEEMKAQFTNIYVKNLDP 238
Query: 161 YHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDR 213
T+ D + FE +G + S I+ R F FV +E E+A +A++ + S+ R
Sbjct: 239 EVTQD-DFVKLFEQFGNVTSAVIQTDEQGQSRGFGFVNFETHEEAQKAVETLHDSEYHGR 297
Query: 214 VISV 217
+ V
Sbjct: 298 KLFV 301
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN--------FAFVQYEVQEDATR 200
PS +L+V DP T E F G + S+R+ R+ +A+V Y D R
Sbjct: 42 PSASLYVGELDPTVTEAMLFEI-FNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGER 100
Query: 201 ALDATNMSKLTDRVISVEYAVRDDDDRRNGH 231
AL+ N S + R + ++ RD R+ G
Sbjct: 101 ALEQLNYSLIKGRACRIMWSQRDPALRKTGQ 131
>gi|356572373|ref|XP_003554343.1| PREDICTED: uncharacterized protein LOC100789862 [Glycine max]
Length = 287
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G+ R DLER F RYG+V VDMK+ FAF+ D RDA+DA LD +
Sbjct: 13 LYVGHLSSRTRSRDLERAFSRYGRVRGVDMKNDFAFVDFSDPRDADDARYNLDGRDV--D 70
Query: 117 GRRLRVEWTK 126
G R+ VE+ K
Sbjct: 71 GSRIIVEFAK 80
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%)
Query: 152 TLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLT 211
T + TR+RDLER F YG++ V ++ +FAFV + DA A + +
Sbjct: 11 TRLYVGHLSSRTRSRDLERAFSRYGRVRGVDMKNDFAFVDFSDPRDADDARYNLDGRDVD 70
Query: 212 DRVISVEYA 220
I VE+A
Sbjct: 71 GSRIIVEFA 79
>gi|56758822|gb|AAW27551.1| SJCHGC05822 protein [Schistosoma japonicum]
gi|226469552|emb|CAX76606.1| Splicing factor, arginine/serine-rich 1 [Schistosoma japonicum]
gi|226469554|emb|CAX76607.1| Splicing factor, arginine/serine-rich 1 [Schistosoma japonicum]
gi|226469556|emb|CAX76608.1| Splicing factor, arginine/serine-rich 1 [Schistosoma japonicum]
gi|226469558|emb|CAX76609.1| Splicing factor, arginine/serine-rich 1 [Schistosoma japonicum]
gi|226469560|emb|CAX76610.1| Splicing factor, arginine/serine-rich 1 [Schistosoma japonicum]
gi|226469562|emb|CAX76611.1| Splicing factor, arginine/serine-rich 1 [Schistosoma japonicum]
gi|226469564|emb|CAX76612.1| Splicing factor, arginine/serine-rich 1 [Schistosoma japonicum]
gi|226472960|emb|CAX71166.1| Splicing factor, arginine/serine-rich 1 [Schistosoma japonicum]
gi|226472964|emb|CAX71168.1| Splicing factor, arginine/serine-rich 1 [Schistosoma japonicum]
gi|226472966|emb|CAX71169.1| Splicing factor, arginine/serine-rich 1 [Schistosoma japonicum]
Length = 225
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 8/73 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG------FAFIYMDDERDAEDAIRGLDR 110
I+ GN DA+ D+E LF +YG + +D+K+G FAF+ +DE DA DA+RG D
Sbjct: 8 IYVGNLPPDAKTRDIENLFSKYGPIAAIDLKAGQRRGPPFAFVEFEDELDASDAVRGRDG 67
Query: 111 TEFGRKGRRLRVE 123
F G LRVE
Sbjct: 68 YNF--DGYALRVE 78
>gi|30679138|ref|NP_849537.1| splicing factor SR1B [Arabidopsis thaliana]
gi|26451203|dbj|BAC42705.1| unknown protein [Arabidopsis thaliana]
gi|332656771|gb|AEE82171.1| splicing factor SR1B [Arabidopsis thaliana]
Length = 178
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 7/76 (9%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG V ++D+K G+AF+ +D RDA+DAI G D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRD 66
Query: 110 RTEFGRKGRRLRVEWT 125
+F G LRVE
Sbjct: 67 GYDF--DGHHLRVELA 80
>gi|225708540|gb|ACO10116.1| Splicing factor, arginine/serine-rich 5 [Osmerus mordax]
Length = 135
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 36/57 (63%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
IF G AR+ D+ER F+ +G++ +D+K GF F+ DD RDAEDA+ LD E
Sbjct: 6 IFIGRLNPSAREKDVERFFKGFGRIRDIDLKRGFGFVEFDDPRDAEDAVYELDGKEL 62
Score = 41.6 bits (96), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 153 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTD 212
+F+ +P R +D+ER F+ +G+I + ++R F FV+++ DA A+ + +L +
Sbjct: 6 IFIGRLNP-SAREKDVERFFKGFGRIRDIDLKRGFGFVEFDDPRDAEDAVYELDGKELCN 64
Query: 213 RVISVEYA 220
+++E+A
Sbjct: 65 ERVTIEHA 72
>gi|260833612|ref|XP_002611806.1| hypothetical protein BRAFLDRAFT_141671 [Branchiostoma floridae]
gi|229297178|gb|EEN67815.1| hypothetical protein BRAFLDRAFT_141671 [Branchiostoma floridae]
Length = 175
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 6/72 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG----FAFIYMDDERDAEDAIRGLDRTE 112
I+ GN + RQ D++ +F +YGK+ VD+K G FAF+ +D+RDA+DA+ G R
Sbjct: 8 IYVGNLPPEVRQEDIKDVFYKYGKIIHVDLKIGRGPPFAFVEFEDKRDADDAVYG--RDG 65
Query: 113 FGRKGRRLRVEW 124
+ G RLRVE+
Sbjct: 66 YTLDGYRLRVEF 77
>gi|403417917|emb|CCM04617.1| predicted protein [Fibroporia radiculosa]
Length = 671
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 77/180 (42%), Gaps = 32/180 (17%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDAIRGL 108
++ G + ++ L +F G V D V +S G+A++ + D E A+ L
Sbjct: 46 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 105
Query: 109 DRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDL 168
+ + KGR R+ W++ + +R+ G G+ +F+ N D + L
Sbjct: 106 NYSSI--KGRACRIMWSQRDPALRKTGQGN--------------IFIKNLDE-QIDNKAL 148
Query: 169 ERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
F +G ++S ++ + + FV YE E A A+ A N L D+ + V Y +
Sbjct: 149 HDTFAAFGNVLSCKVATDEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGYHI 208
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 97/227 (42%), Gaps = 22/227 (9%)
Query: 31 RRLYVLGFR--RSHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK- 87
+++YV G+ R Q + +A I+ NF+ + + + LF+++G V ++
Sbjct: 200 KKVYV-GYHISRKERQSKLEEMKAQFTNIYVKNFDPEVTEEEFMALFQQFGSVTSAVIQR 258
Query: 88 ------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV--EWTKHERGIRRPGGGSS 139
GF F+ + +A+ A+ GL +F KG++L V K ER
Sbjct: 259 DDEGRSRGFGFVNFEVHDEAQKAVEGLHDLDF--KGKKLFVSRAQKKAEREQELRQSYEQ 316
Query: 140 ARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN-------FAFVQY 192
A+ + L++ N + R FEP+G I S ++ R+ F FV +
Sbjct: 317 AKMEKMSKFQGVNLYIKNLEDDLDDDRL-RTEFEPFGSITSAKVMRDEKGTSKGFGFVCF 375
Query: 193 EVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSPDRNRDR 239
++AT+A+ N + + + V A R D R+ S R++
Sbjct: 376 SSPDEATKAVAEMNNKMIGTKPLYVSLAQRRDVRRQQLESQIAQRNQ 422
>gi|409045875|gb|EKM55355.1| hypothetical protein PHACADRAFT_255926 [Phanerochaete carnosa
HHB-10118-sp]
Length = 672
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 86/199 (43%), Gaps = 19/199 (9%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-------GFAFIYMDDERDAEDAIRGLD 109
I+ N + + + +LF ++G V +++ GF F+ + +A++A+ GL
Sbjct: 232 IYVKNLDPEVSLEEFTQLFEQFGNVTSAVIQTDEEGNSKGFGFVNFEFHEEAQNAVDGLH 291
Query: 110 RTEFGRKGRRLRV--EWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRD 167
TE+ GR+L V K ER A+ + L++ N D R
Sbjct: 292 DTEY--NGRKLFVSRAQKKAEREEELRKSYEHAKMEKMSKYQGVNLYIKNLDDEIDDER- 348
Query: 168 LERHFEPYGKIISVRIRRN-------FAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
L FEP+G I S ++ R+ F FV + ++AT+A+ N + + + V A
Sbjct: 349 LRAEFEPFGTITSAKVMRDEKGSSKGFGFVCFSSPDEATKAVAEMNNKMIGAKPLYVSLA 408
Query: 221 VRDDDDRRNGHSPDRNRDR 239
R + R+ S R++
Sbjct: 409 QRREVRRQQLESQIAQRNQ 427
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 77/180 (42%), Gaps = 32/180 (17%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDAIRGL 108
++ G + ++ L +F G V D V +S G+A++ + D E A+ L
Sbjct: 51 LYVGELDPTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 110
Query: 109 DRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDL 168
+ + KGR R+ W++ + +R+ G G+ +F+ N D + L
Sbjct: 111 NYSLI--KGRACRIMWSQRDPALRKTGQGN--------------IFIKNLDE-AIDNKAL 153
Query: 169 ERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
F +G ++S ++ + + FV YE E A A+ A N L D+ + V + +
Sbjct: 154 HDTFAAFGNVLSCKVATDEQGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHI 213
>gi|224120944|ref|XP_002318458.1| predicted protein [Populus trichocarpa]
gi|222859131|gb|EEE96678.1| predicted protein [Populus trichocarpa]
Length = 280
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+S +E LF +YG++ V++K + F+ ++ RDAEDAIRG D
Sbjct: 7 RTIYVGNLPADIRESKVEDLFYKYGRILDVELKIPPRPPCYCFVEFENARDAEDAIRGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERG 130
F G RLRVE RG
Sbjct: 67 GYNF--DGSRLRVELAHGGRG 85
>gi|449486099|ref|XP_002195735.2| PREDICTED: serine/arginine-rich splicing factor 6 [Taeniopygia
guttata]
Length = 348
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 25/179 (13%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y R+ D++R F YG++ VD+K+G+ F+ +D RDA+DA+ L+ +
Sbjct: 4 VYIGRLSYHVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKDLC-- 61
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTR---------------PSKTLFVINFDPY 161
G R+ VE H RG RR G S S P +T F + +
Sbjct: 62 GERVIVE---HARGPRRDRDGYSYSSRSGGGGGYSSRRQSGRDKYGPPVRTEFRLIVENL 118
Query: 162 HTRT--RDLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
+R +DL+ G++ + + R N +++ D RALD + +++ R I
Sbjct: 119 SSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRKI 177
>gi|348505538|ref|XP_003440318.1| PREDICTED: serine/arginine-rich splicing factor 1-like [Oreochromis
niloticus]
Length = 244
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 10/162 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAFI +D RDA+DA+ G D
Sbjct: 16 IYVGNLPPDIRTKDVEDVFYKYGTIRDIDLKNRRGGPPFAFIEFEDPRDADDAVYGRDGY 75
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN--TRPSKTLFVINFDPYHTRTRDLE 169
++ G RLRVE+ + RG R G A R +R S+ V++ P +DL+
Sbjct: 76 DY--DGYRLRVEFPRSGRGSRGGFGIGGAPRGRYGPPSRRSEYRVVVSGLPQSGSWQDLK 133
Query: 170 RHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
H G + + R+ V++ +ED T A+ + +K
Sbjct: 134 DHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 175
>gi|148228289|ref|NP_001088400.1| serine/arginine-rich splicing factor 9 [Xenopus laevis]
gi|54261635|gb|AAH84289.1| LOC495254 protein [Xenopus laevis]
Length = 230
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 80/166 (48%), Gaps = 17/166 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMK------SGFAFIYMDDERDAEDAIRGLDR 110
I+ GN D R+ +LE LF RYG++ V++K + FAFI D RDAEDA+ G +
Sbjct: 18 IYVGNLPSDIREKELEDLFDRYGRIRTVELKNRGGSSAPFAFISYQDPRDAEDAVFGRNG 77
Query: 111 TEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN-----TRPSKTLFVINFDPYHTRT 165
+FG RLRVE+ + RG GGG S +R S+ +++ P
Sbjct: 78 YDFGSC--RLRVEFPRSFRGSGGGGGGGGGYGGSRGRNGPPSRRSEYRVIVSGLPPSGSW 135
Query: 166 RDLERHFEPYGKIISVRIRRN----FAFVQYEVQEDATRALDATNM 207
+DL+ H G + + ++ F++ E E A R LD T
Sbjct: 136 QDLKDHMREAGDVCYADVHKDGMGIVEFIRKEDMEYALRKLDDTKF 181
>gi|403215569|emb|CCK70068.1| hypothetical protein KNAG_0D03220 [Kazachstania naganishii CBS
8797]
Length = 399
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 82/185 (44%), Gaps = 28/185 (15%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKV--DRVDMKSG------FAFIYMDDERDAEDAIRGL 108
+F G + L+ F G V RV M+ G + ++ +D AE A++ +
Sbjct: 151 LFVGRLSWSVDDEWLKNEFAPIGGVVSARVIMERGTDRSRGYGYVDFEDISYAEKALKEM 210
Query: 109 DRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRP----STNTRPSKTLFVINFDPYHTR 164
E GR + V+ + +P GG+S R + PS TLF+ N +
Sbjct: 211 QGKEI--DGRPINVDMSTS-----KPAGGASNDRAKKFGDVPSEPSDTLFLGNL-SFDAD 262
Query: 165 TRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 216
+L F +G+IISVRI + F +VQY EDA +ALDA + DR +
Sbjct: 263 RDNLYEIFGKFGEIISVRIPTHPETEQPKGFGYVQYTNTEDAKKALDALQGESINDRPVR 322
Query: 217 VEYAV 221
++++
Sbjct: 323 LDFST 327
>gi|225439817|ref|XP_002277105.1| PREDICTED: uncharacterized protein LOC100258584 [Vitis vinifera]
Length = 307
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G R DLE LF RYG+V VDMK FAF+ D RDA+DA L+ +F
Sbjct: 13 LYVGRLSSRTRTRDLESLFSRYGRVRDVDMKHDFAFVEFSDPRDADDARYNLNGRDF--D 70
Query: 117 GRRLRVEWTK 126
G R+ VE+ K
Sbjct: 71 GSRIIVEFAK 80
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%)
Query: 163 TRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
TRTRDLE F YG++ V ++ +FAFV++ DA A N I VE+A
Sbjct: 22 TRTRDLESLFSRYGRVRDVDMKHDFAFVEFSDPRDADDARYNLNGRDFDGSRIIVEFA 79
>gi|52140009|gb|AAU29331.1| ASF/SF2-like pre-mRNA splicing factor SRP30 [Zea mays]
gi|414877275|tpg|DAA54406.1| TPA: ASF/SF2-like pre-mRNA splicing factor SRP30 isoform 1 [Zea
mays]
gi|414877276|tpg|DAA54407.1| TPA: ASF/SF2-like pre-mRNA splicing factor SRP30 isoform 2 [Zea
mays]
Length = 260
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG++ +D+K G+AF+ +D RDA+DAI G D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFYKYGRILDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERG 130
F G RLRVE RG
Sbjct: 67 GYNF--DGYRLRVELAHGGRG 85
>gi|3193304|gb|AAC19288.1| T14P8.21 [Arabidopsis thaliana]
gi|7269003|emb|CAB80736.1| AT4g02430 [Arabidopsis thaliana]
Length = 294
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 7/76 (9%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG V ++D+K G+AF+ +D RDA+DAI G D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRD 66
Query: 110 RTEFGRKGRRLRVEWT 125
+F G LRVE
Sbjct: 67 GYDF--DGHHLRVELA 80
>gi|194696448|gb|ACF82308.1| unknown [Zea mays]
gi|414877280|tpg|DAA54411.1| TPA: ASF/SF2-like pre-mRNA splicing factor SRP30 [Zea mays]
Length = 263
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG++ +D+K G+AF+ +D RDA+DAI G D
Sbjct: 10 RTIYVGNLPGDIREREVEDLFYKYGRILDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRD 69
Query: 110 RTEFGRKGRRLRVEWTKHERG 130
F G RLRVE RG
Sbjct: 70 GYNF--DGYRLRVELAHGGRG 88
>gi|389748594|gb|EIM89771.1| hypothetical protein STEHIDRAFT_128672 [Stereum hirsutum FP-91666
SS1]
Length = 276
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 70/161 (43%), Gaps = 9/161 (5%)
Query: 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 112
M R ++ G DAR D+ + F YGK+ + +GF F+ + RDAEDA+ +
Sbjct: 1 MSRRLYLGRLPTDARTDDVSKFFEGYGKIVDCRVMTGFGFVEFESSRDAEDALNHFNGKP 60
Query: 113 FGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHF 172
F G L VE+ K R R P + R RP +++ T +DL+
Sbjct: 61 F--MGTNLVVEFAKESRPRRDPYDDRAPR----ARRPPGIRIIVSGISRDTSWQDLKDFG 114
Query: 173 EPYGKIISVRIRRNF---AFVQYEVQEDATRALDATNMSKL 210
G + I R+ ++Y +EDA RA+ + L
Sbjct: 115 REAGSVSFADIERDVPGQGVLEYLAREDAERAVKDLDGKDL 155
>gi|112982956|ref|NP_001037676.1| splicing factor arginine/serine-rich 6 [Bombyx mori]
gi|109706819|gb|ABG42996.1| splicing factor arginine/serine-rich 6 [Bombyx mori]
Length = 306
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 81/175 (46%), Gaps = 17/175 (9%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G + R+ DLE+ F+ +G++ + +K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 6 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKEL--L 63
Query: 117 GRRLRVE-----------WTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRT 165
G R+ VE + + +R R GGG S TR L V N
Sbjct: 64 GERVVVEPARGIDRSADRYRRGDRHYERSGGGRSRYEYGPPTRTEYRLIVENVSS-RISW 122
Query: 166 RDLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
+DL+ + G++ + + RN V++ D A++ + ++L R + +
Sbjct: 123 QDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTELNGRRVRL 177
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Query: 160 PYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 219
P+ R RDLE+ F+ +G+I + I+ + FV++E DA A+ N +L + VE
Sbjct: 12 PFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVE- 70
Query: 220 AVRDDDDRRNGHSPDRNRDRSPDRGRR 246
P R DRS DR RR
Sbjct: 71 -------------PARGIDRSADRYRR 84
>gi|1049086|gb|AAA93072.1| SRp55-3, partial [Homo sapiens]
Length = 335
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y+ R+ D++R F YG++ VD+K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELC-- 61
Query: 117 GRRLRVEWTKHERGIRR 133
G + VE H RG RR
Sbjct: 62 GEHVIVE---HARGPRR 75
>gi|448878372|gb|AGE46149.1| arginine/serine-rich splicing factor SR27 transcript II [Sorghum
bicolor]
Length = 165
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG++ +D+K G+AF+ +D RDA+DAI G D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFYKYGRILDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERG 130
F G RLRVE RG
Sbjct: 67 GYNF--DGYRLRVELAHGGRG 85
>gi|448878370|gb|AGE46148.1| arginine/serine-rich splicing factor SR27 transcript I [Sorghum
bicolor]
Length = 230
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG++ +D+K G+AF+ +D RDA+DAI G D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFYKYGRILDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERG 130
F G RLRVE RG
Sbjct: 67 GYNF--DGYRLRVELAHGGRG 85
>gi|414877278|tpg|DAA54409.1| TPA: hypothetical protein ZEAMMB73_543160 [Zea mays]
Length = 254
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG++ +D+K G+AF+ +D RDA+DAI G D
Sbjct: 10 RTIYVGNLPGDIREREVEDLFYKYGRILDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRD 69
Query: 110 RTEFGRKGRRLRVEWTKHERG 130
F G RLRVE RG
Sbjct: 70 GYNF--DGYRLRVELAHGGRG 88
>gi|414877279|tpg|DAA54410.1| TPA: hypothetical protein ZEAMMB73_543160 [Zea mays]
Length = 272
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG++ +D+K G+AF+ +D RDA+DAI G D
Sbjct: 10 RTIYVGNLPGDIREREVEDLFYKYGRILDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRD 69
Query: 110 RTEFGRKGRRLRVEWTKHERG 130
F G RLRVE RG
Sbjct: 70 GYNF--DGYRLRVELAHGGRG 88
>gi|357122647|ref|XP_003563026.1| PREDICTED: uncharacterized protein LOC100823440 [Brachypodium
distachyon]
Length = 644
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 140 ARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN--------FAFVQ 191
A R + +P + LFV F Y T RDLE+ F YG++ SVR+ R+ F F+
Sbjct: 552 ANRKTGLGKPGRNLFVAGF-SYATTERDLEKKFAKYGRVTSVRVVRDKRTGDSRGFGFLC 610
Query: 192 YEVQEDATRALDATNMSKLTDRVISVE 218
E EDA A+ A + ++ R+I VE
Sbjct: 611 LEKDEDADAAIQACDETEWNGRIILVE 637
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRV----DMKS----GFAFIYMDDERDAEDAIR 106
R +F F Y + DLE+ F +YG+V V D ++ GF F+ ++ + DA+ AI+
Sbjct: 563 RNLFVAGFSYATTERDLEKKFAKYGRVTSVRVVRDKRTGDSRGFGFLCLEKDEDADAAIQ 622
Query: 107 GLDRTEFGRKGRRLRVEWTK 126
D TE+ GR + VE +K
Sbjct: 623 ACDETEWN--GRIILVEKSK 640
>gi|356505156|ref|XP_003521358.1| PREDICTED: uncharacterized protein LOC100812698 [Glycine max]
Length = 287
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G+ R DLER F RYG+V VDMK+ FAF+ D RDA+DA LD +
Sbjct: 13 LYVGHLSSRTRSRDLERAFSRYGRVRGVDMKNDFAFVDFSDPRDADDARYNLDGRDV--D 70
Query: 117 GRRLRVEWTK 126
G R+ VE+ K
Sbjct: 71 GSRIIVEFAK 80
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%)
Query: 152 TLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLT 211
T + TR+RDLER F YG++ V ++ +FAFV + DA A + +
Sbjct: 11 TRLYVGHLSSRTRSRDLERAFSRYGRVRGVDMKNDFAFVDFSDPRDADDARYNLDGRDVD 70
Query: 212 DRVISVEYA 220
I VE+A
Sbjct: 71 GSRIIVEFA 79
>gi|384950064|gb|AFI38637.1| serine/arginine-rich splicing factor 9 [Macaca mulatta]
Length = 216
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 16/160 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG-----FAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R+ DLE LF +YG++ +++K+ FAF+ +D RDAEDAI G +
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKTRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERH 171
++G+ RLRVE+ + G G P TR S +++ +DL+ H
Sbjct: 76 DYGQC--RLRVEFPRTYGGRGGWPRGGRNGPP---TRRSDFRVLVS-----GSWQDLKDH 125
Query: 172 FEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
G + ++++ V+Y +ED AL + +K
Sbjct: 126 MREAGDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTKF 165
>gi|366987527|ref|XP_003673530.1| hypothetical protein NCAS_0A05890 [Naumovozyma castellii CBS 4309]
gi|342299393|emb|CCC67147.1| hypothetical protein NCAS_0A05890 [Naumovozyma castellii CBS 4309]
Length = 415
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 83/184 (45%), Gaps = 27/184 (14%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKV--DRVDMKSG------FAFIYMDDERDAEDAIRGL 108
IF G + L++ F G V RV M+ G + ++ +D+ AE AI+ +
Sbjct: 164 IFVGRLSWSIDDEWLKKEFEHIGGVVSARVIMERGTDRSRGYGYVDFEDKSYAEKAIKEM 223
Query: 109 DRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN---TRPSKTLFVINFDPYHTRT 165
E GR + V+ + +P G++ R + PS+TLF+ N ++
Sbjct: 224 QGKEI--DGREINVDMSTS-----KPAAGNNDRAKKFGDVPSEPSETLFLGNL-SFNADR 275
Query: 166 RDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
+ F YG+IISVRI + F +VQY EDA +AL+ + +R + +
Sbjct: 276 DAISELFSKYGEIISVRIPTHPETEQPKGFGYVQYTNVEDAKKALEGLQGEYIDNRPVRL 335
Query: 218 EYAV 221
+Y+
Sbjct: 336 DYST 339
>gi|224032703|gb|ACN35427.1| unknown [Zea mays]
gi|414877277|tpg|DAA54408.1| TPA: hypothetical protein ZEAMMB73_543160 [Zea mays]
Length = 234
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG++ +D+K G+AF+ +D RDA+DAI G D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFYKYGRILDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERG 130
F G RLRVE RG
Sbjct: 67 GYNF--DGYRLRVELAHGGRG 85
>gi|448878358|gb|AGE46142.1| arginine/serine-rich splicing factor SR30 transcript I [Sorghum
bicolor]
Length = 255
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 7/79 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R+ +++ LF +YG++ +D+K GFAF+ +D DAEDAI G D
Sbjct: 9 IYVGNLPGDIREREVDDLFYKYGRIVEIDLKIPPRPPGFAFVEFEDPHDAEDAIYGRDGY 68
Query: 112 EFGRKGRRLRVEWTKHERG 130
F G RLRVE RG
Sbjct: 69 NF--DGHRLRVELAHGGRG 85
>gi|398406965|ref|XP_003854948.1| hypothetical protein MYCGRDRAFT_99129 [Zymoseptoria tritici IPO323]
gi|339474832|gb|EGP89924.1| hypothetical protein MYCGRDRAFT_99129 [Zymoseptoria tritici IPO323]
Length = 333
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 77/176 (43%), Gaps = 22/176 (12%)
Query: 57 IFCGNFEYDARQSDLERLFRRYG--KVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFG 114
++ GN +A ++D+E F +G ++ + + +GF FI D DA D + +EF
Sbjct: 9 LYLGNLPRNATKADVENHFNTHGTGEITEIKLMNGFGFIEYKDAMDARDVVPAFHGSEF- 67
Query: 115 RKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTL--FVINFDPYHTRTRDLERHF 172
G RL V++ RG RP G ++P RP +T+ I P+ T +DL+
Sbjct: 68 -MGERLVVQFA---RGSNRPRDGFE-QQPRQAPRPRRTVHRMTITGLPFETSWQDLKDFA 122
Query: 173 EPYG-KIISVRIRRN--------FAFVQYEVQED---ATRALDATNMSKLTDRVIS 216
G ++ + R +FV+YE D A LD T R IS
Sbjct: 123 RQSGLDVVYSEVGRERDSSGTGKGSFVEYETAADLAAAVEKLDNNEFKGATVRCIS 178
>gi|383422447|gb|AFH34437.1| serine/arginine-rich splicing factor 9 [Macaca mulatta]
Length = 216
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 16/160 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG-----FAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R+ DLE LF +YG++ +++K+ FAF+ +D RDAEDAI G +
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERH 171
++G+ RLRVE+ + G G P TR S +++ +DL+ H
Sbjct: 76 DYGQC--RLRVEFPRTYGGRGGWPRGGRNGPP---TRRSDFRVLVS-----GSWQDLKDH 125
Query: 172 FEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
G + ++++ V+Y +ED AL + +K
Sbjct: 126 MREAGDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTKF 165
>gi|71895047|ref|NP_001026014.1| splicing factor, arginine/serine-rich 6 [Gallus gallus]
gi|53133810|emb|CAG32234.1| hypothetical protein RCJMB04_20j14 [Gallus gallus]
Length = 348
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y R+ D++R F YG++ VD+K+G+ F+ +D RDA+DA+ L+ +
Sbjct: 4 VYIGRLSYHVREKDIQRFFSGYGRLLEVDLKNGYGFVKFEDSRDADDAVYELNGKDLC-- 61
Query: 117 GRRLRVEWTKHERGIRR 133
G R+ VE H RG RR
Sbjct: 62 GERVIVE---HARGPRR 75
>gi|449296860|gb|EMC92879.1| hypothetical protein BAUCODRAFT_114866 [Baudoinia compniacensis
UAMH 10762]
Length = 326
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 21/175 (12%)
Query: 57 IFCGNFEYDARQSDLERLFRRYG--KVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFG 114
++ GN +A ++D+E F +G ++ + + +GF FI D DA D + +EF
Sbjct: 16 LYLGNLPRNATKADVENHFNTHGTGEITEIKLMNGFGFIEYKDAMDARDVVPAFHGSEF- 74
Query: 115 RKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTL--FVINFDPYHTRTRDLERHF 172
G RL V++ RG RP G + P RP +T+ I P+ T +DL+
Sbjct: 75 -MGERLVVQFA---RGGNRPRDGYND-APRMAPRPRRTVHRMTITGLPFETSWQDLKDFA 129
Query: 173 EPYG-KIISVRIRR-------NFAFVQYEVQED---ATRALDATNMSKLTDRVIS 216
G ++ + R FV+YE +D A LD + T R IS
Sbjct: 130 RQSGLDVVYSEVARERDASGGGKGFVEYETAQDLASAVEKLDNHDFKGSTVRCIS 184
>gi|242052807|ref|XP_002455549.1| hypothetical protein SORBIDRAFT_03g013010 [Sorghum bicolor]
gi|241927524|gb|EES00669.1| hypothetical protein SORBIDRAFT_03g013010 [Sorghum bicolor]
Length = 186
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG++ +D+K G+AF+ +D RDA+DAI G D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFYKYGRILDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERG 130
F G RLRVE RG
Sbjct: 67 GYNF--DGYRLRVELAHGGRG 85
>gi|209154606|gb|ACI33535.1| Splicing factor, arginine/serine-rich 5 [Salmo salar]
Length = 329
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
+F G AR+ D+E+ F+ YG++ V++K+GF F+ DD RDA+DA+ L+ E
Sbjct: 6 VFIGRLSPHARERDVEKFFKGYGRIREVNLKNGFGFVEFDDPRDADDAVYELNGKEL 62
>gi|52345470|ref|NP_001004783.1| serine/arginine-rich splicing factor 5 [Xenopus (Silurana)
tropicalis]
gi|49522053|gb|AAH74518.1| splicing factor, arginine/serine-rich 5 [Xenopus (Silurana)
tropicalis]
gi|89273344|emb|CAJ81460.1| splicing factor, arginine/serine-rich 5 [Xenopus (Silurana)
tropicalis]
Length = 272
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
+F G AR+ D+ER F+ YG++ +D+K GF F+ DD RDA+DA+ LD E
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFDDPRDADDAVYELDGKEL 62
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 153 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTD 212
+F+ +P R +D+ER F+ YG+I + ++R F FV+++ DA A+ + +L +
Sbjct: 6 VFIGRLNP-AAREKDVERFFKGYGRIRDIDLKRGFGFVEFDDPRDADDAVYELDGKELCN 64
Query: 213 RVISVEYA 220
+++E+A
Sbjct: 65 ERVTIEHA 72
>gi|51971529|dbj|BAD44429.1| unknown protein [Arabidopsis thaliana]
Length = 290
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G R DLERLF RYG+V VDMK +AF+ D RDA+DA LD +F
Sbjct: 13 LYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVVFGDPRDADDARHYLDGRDF--D 70
Query: 117 GRRLRVEWTK 126
G R+ VE+++
Sbjct: 71 GSRITVEFSR 80
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 163 TRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
TRTRDLER F YG++ V ++R++AFV + DA A + I+VE++
Sbjct: 22 TRTRDLERLFSRYGRVRDVDMKRDYAFVVFGDPRDADDARHYLDGRDFDGSRITVEFS 79
>gi|326495240|dbj|BAJ85716.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326504388|dbj|BAJ91026.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326510429|dbj|BAJ87431.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326523109|dbj|BAJ88595.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 294
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ +E LF +YG++ +D+K G+AF+ +D RDAEDA G D
Sbjct: 7 RTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERG 130
F G RLRVE RG
Sbjct: 67 GYNF--DGNRLRVEPAHGGRG 85
>gi|52140010|gb|AAU29332.1| ASF/SF2-like pre-mRNA splicing factor SRP30' [Zea mays]
Length = 241
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG++ +D+K G+AF+ +D RDA+DAI G D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFYKYGRILDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERG 130
F G RLRVE RG
Sbjct: 67 GYNF--DGYRLRVELAHGGRG 85
>gi|414877281|tpg|DAA54412.1| TPA: ASF/SF2-like pre-mRNA splicing factor SRP30 [Zea mays]
Length = 244
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG++ +D+K G+AF+ +D RDA+DAI G D
Sbjct: 10 RTIYVGNLPGDIREREVEDLFYKYGRILDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRD 69
Query: 110 RTEFGRKGRRLRVEWTKHERG 130
F G RLRVE RG
Sbjct: 70 GYNF--DGYRLRVELAHGGRG 88
>gi|242782227|ref|XP_002479958.1| electron transfer flavoprotein-ubiquinone oxidoreductase [Talaromyces
stipitatus ATCC 10500]
gi|218720105|gb|EED19524.1| electron transfer flavoprotein-ubiquinone oxidoreductase [Talaromyces
stipitatus ATCC 10500]
Length = 1100
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 105/251 (41%), Gaps = 34/251 (13%)
Query: 34 YVLGFRRSHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYG--KVDRVDMKSGFA 91
++ G + S A E ++ GN + + D+E F +G K+ + + +GF
Sbjct: 781 FLQGLSKYSSTFQSAMSEVSSTRLYLGNLPRNVTKKDIEEYFGSHGTGKITEIKLMNGFG 840
Query: 92 FIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSK 151
FI +D DA D + ++F KG RL V++ + R G S RP+ RP +
Sbjct: 841 FIEYEDAMDARDVVPAFHGSDF--KGERLTVQFARGPRHKETFNGPSD--RPAA-PRPRR 895
Query: 152 TLFVINFD--PYHTRTRDLERHFEPYGKII----SVRIRRNFAFVQYEVQEDATRALDAT 205
T+F + P T +DL+ G + + R R FV++E D A++
Sbjct: 896 TVFRMQVSGLPTETSWQDLKDFARQSGLDVVYSETTRERDGRGFVEFESHADLKTAVEKL 955
Query: 206 NMSKLTDRVISVEYAVRDDDDR-------------RNGHSPDRNRD-RSPDRG------- 244
+ +L ++ V+ ++R R G+ P + D R P RG
Sbjct: 956 DGRELKGSQVTCVADVQPAEERAPYRDPYRSRSPPRRGYPPMDDYDRRGPPRGYSPRQHY 1015
Query: 245 RRRSPSPYRRE 255
R RSP RR+
Sbjct: 1016 RERSPQALRRD 1026
>gi|156050581|ref|XP_001591252.1| hypothetical protein SS1G_07878 [Sclerotinia sclerotiorum 1980]
gi|154692278|gb|EDN92016.1| hypothetical protein SS1G_07878 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 376
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 78/180 (43%), Gaps = 30/180 (16%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRV-------DMKSGFAFIYMDDERDAEDAIRGLD 109
I+ GN +D + DL++ F +G + V + GFA+I D + A AI +
Sbjct: 148 IYIGNLLFDITEEDLKKEFEHFGTITDVRVTRDARGLSKGFAYIDFADVQSATAAIEEKN 207
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLE 169
+T F +GRRL V + IR + P PSK LF+ N + DL
Sbjct: 208 QTIF--EGRRLIVNYVNQTPKIRD-------QNP-----PSKCLFIGNL-AFEMSDADLN 252
Query: 170 RHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
F +I VR+ R FA + + A +AL+ ++ +R + V+Y+V
Sbjct: 253 SLFREVRNVIDVRVAIDRRTGQPRGFAHADFVDVDSAMKALEQLQGKEVFNRRLRVDYSV 312
>gi|359486310|ref|XP_002281756.2| PREDICTED: uncharacterized protein LOC100251921 [Vitis vinifera]
Length = 304
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G R DLE LF RYG+V VDMK FAF+ D RDA+DA L+ +F
Sbjct: 13 LYVGRLSSRTRSRDLEDLFSRYGRVRDVDMKHDFAFVEFSDPRDADDARYSLNGRDF--D 70
Query: 117 GRRLRVEWTK 126
G R+ VE+ K
Sbjct: 71 GSRIIVEFAK 80
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 163 TRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
TR+RDLE F YG++ V ++ +FAFV++ DA A + N I VE+A
Sbjct: 22 TRSRDLEDLFSRYGRVRDVDMKHDFAFVEFSDPRDADDARYSLNGRDFDGSRIIVEFA 79
>gi|378727012|gb|EHY53471.1| hypothetical protein HMPREF1120_01663 [Exophiala dermatitidis
NIH/UT8656]
Length = 316
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 99/234 (42%), Gaps = 32/234 (13%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGK--VDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFG 114
++ GN + + D++ F +G + + + +GF FI +D DA D + TEF
Sbjct: 9 LYLGNLPRNITKQDIQDHFGTHGAGSIKEIKLMNGFGFIEYEDPMDARDVVPAFHGTEF- 67
Query: 115 RKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLF---VINFDPYHTRTRDLERH 171
KG RL V++ + R G S P RP +T++ + P T +DL+
Sbjct: 68 -KGERLTVQFARGPRRKDDFNGPSDRNIP----RPRRTIYRMQITGLQP-DTSWQDLKDF 121
Query: 172 FEPYGKIISV-----RIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDD 226
G++ V R R FV++E Q D A++ + + + V D D
Sbjct: 122 ARNSGQLDVVYSETGRERDGKGFVEFETQADLKTAVEKLDGQTFKGATV---HCVADIQD 178
Query: 227 RRNGHSPDRN--RDRSPDRGRRRSPSPYRRERGSPDYG---RGSS---RSPYRR 272
R PD R RSP RGR Y RG P G RGS RSP RR
Sbjct: 179 ER----PDMRSYRQRSPPRGRYGPMDDYHDRRGPPQRGWSPRGSGYRERSPGRR 228
>gi|393911086|gb|EJD76160.1| hypothetical protein LOAG_16828 [Loa loa]
Length = 407
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLD 109
M ++ G Y A + D+ER FR YG++ + +K+G+AF+ D RDAEDA+ L+
Sbjct: 1 MGSRVYVGRLSYRAHERDIERFFRGYGRITEILLKNGYAFVEFSDRRDAEDAVHDLN 57
>gi|42561847|ref|NP_172386.3| splicing factor, arginine/serine-rich 1/9 [Arabidopsis thaliana]
gi|4775270|emb|CAB42557.1| SF2/ASF-like splicing modulator Srp30 [Arabidopsis thaliana]
gi|23297699|gb|AAN13011.1| putative SF2/ASF splicing modulator Srp30 [Arabidopsis thaliana]
gi|332190279|gb|AEE28400.1| splicing factor, arginine/serine-rich 1/9 [Arabidopsis thaliana]
Length = 268
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 7/74 (9%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG + +D+K G+AF+ +D RDA+DAI G D
Sbjct: 7 RTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRD 66
Query: 110 RTEFGRKGRRLRVE 123
+F G RLRVE
Sbjct: 67 GYDF--DGCRLRVE 78
>gi|432113649|gb|ELK35931.1| Vascular endothelial zinc finger 1 [Myotis davidii]
Length = 688
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 7/73 (9%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 112 EFGRKGRRLRVEW 124
++ G RLRVE+
Sbjct: 78 DY--DGYRLRVEF 88
>gi|47221305|emb|CAG13241.1| unnamed protein product [Tetraodon nigroviridis]
Length = 315
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 38/57 (66%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
+F G+ AR+ D+E+ F+ YG++ +++K+GF F+ DD RDA+DA+ L+ E
Sbjct: 6 VFIGHLSPHARERDVEKFFKGYGRIREINLKNGFGFVEFDDHRDADDAVYELNGKEL 62
>gi|392558545|gb|EIW51732.1| polyadenylate binding protein [Trametes versicolor FP-101664 SS1]
Length = 631
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 77/180 (42%), Gaps = 32/180 (17%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDAIRGL 108
++ G + ++ L +F G V D V +S G+A++ + D E A+ L
Sbjct: 9 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 68
Query: 109 DRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDL 168
+ + KGR R+ W++ + +R+ G G+ +F+ N D + L
Sbjct: 69 NYSLI--KGRACRIMWSQRDPALRKTGQGN--------------IFIKNLDE-QIDNKAL 111
Query: 169 ERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
F +G ++S ++ + + FV YE E A A+ A N L D+ + V + +
Sbjct: 112 HDTFAAFGNVLSCKVATDEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHI 171
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 86/201 (42%), Gaps = 23/201 (11%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-------GFAFIYMDDERDAEDAIRGLD 109
I+ N + + Q + +LF +G++ ++ GF F+ D +A A+ L
Sbjct: 190 IYVKNVDPEVTQEEFVQLFEPFGRITSAVLQVDDEGKSRGFGFVNFDTHEEAHAAVEALH 249
Query: 110 RTEFGRKGRRLRV----EWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRT 165
++ KGR+L V + + E +RR A+ + L++ N +
Sbjct: 250 DSDV--KGRKLFVARAQKKAEREEELRR--SYEQAKMEKMSKYQGVNLYIKNLEDDIDDE 305
Query: 166 RDLERHFEPYGKIISVRIRRN-------FAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
R L FEP+G I S ++ R+ F FV + ++AT+A+ N + + + V
Sbjct: 306 R-LRGEFEPFGNITSAKVMRDEKGISKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVS 364
Query: 219 YAVRDDDDRRNGHSPDRNRDR 239
A R + R+ S R++
Sbjct: 365 LAQRREVRRQQLESQIAQRNQ 385
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 82/191 (42%), Gaps = 29/191 (15%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-------GFAFIYMDDERDAEDAIRGLD 109
IF N + L F +G V + + G+ F++ + AE AI+ ++
Sbjct: 97 IFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGRSKGYGFVHYETAEAAETAIKAVN 156
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLE 169
K + ++ ER + + TN ++V N DP T+ +
Sbjct: 157 GMLLNDKKVYVGHHISRKERQSKI----EEMKNQFTN------IYVKNVDPEVTQ-EEFV 205
Query: 170 RHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV----E 218
+ FEP+G+I S ++ R F FV ++ E+A A++A + S + R + V +
Sbjct: 206 QLFEPFGRITSAVLQVDDEGKSRGFGFVNFDTHEEAHAAVEALHDSDVKGRKLFVARAQK 265
Query: 219 YAVRDDDDRRN 229
A R+++ RR+
Sbjct: 266 KAEREEELRRS 276
>gi|225718228|gb|ACO14960.1| Serine-arginine protein 55 [Caligus clemensi]
Length = 355
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG-FAFIYMDDERDAEDAIRGLDRTEFGR 115
+F GN Y R+ D+ER F RYG+V + +KSG + F DD RDA+DA+ L+ E
Sbjct: 9 VFLGNLPYSVRERDIERFFERYGRVYNIFIKSGKYGFCEFDDYRDADDAVYKLNGGELN- 67
Query: 116 KGRRLRVE 123
G R+ VE
Sbjct: 68 -GERITVE 74
>gi|291231293|ref|XP_002735599.1| PREDICTED: RNA binding motif protein 4B-like isoform 2
[Saccoglossus kowalevskii]
Length = 237
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
+F GN + DL LF +YGKV D+ + F++MD E +A++A+ L+ EF
Sbjct: 11 VFVGNLSKSVQSRDLRDLFEKYGKVLECDVIKNYGFVHMDKEDEAKEALDALNSKEF--M 68
Query: 117 GRRLRVEWTKHERGIRRPGGGSSA 140
G ++VE + R + PG GS
Sbjct: 69 GTNIKVELST-SRVHKTPGMGSKG 91
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 83/192 (43%), Gaps = 28/192 (14%)
Query: 150 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSK 209
+ +FV N ++RDL FE YGK++ + +N+ FV + +++A ALDA N +
Sbjct: 8 ATKVFVGNLSK-SVQSRDLRDLFEKYGKVLECDVIKNYGFVHMDKEDEAKEALDALNSKE 66
Query: 210 LTDRVISVEYAVRDDDDR-------------RNGH-SPDRNRDRS-PDRGRRRSPSPYRR 254
I VE + R GH S D RDRS DRGR R R
Sbjct: 67 FMGTNIKVELSTSRVHKTPGMGSKGECFKCGRQGHWSRDCGRDRSVEDRGRPRE----RD 122
Query: 255 ERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIG 314
G P R P R P+Y R R PYRRD Y R+ SRSP IG
Sbjct: 123 RYGPPPRDRYYDYPPPPRRDFPPEYERERLYDPYRRDYPPEPYYRSRSRSP-------IG 175
Query: 315 HGRGPSRSPYRR 326
R PS PY R
Sbjct: 176 R-RFPSPPPYAR 186
>gi|312089500|ref|XP_003146270.1| hypothetical protein LOAG_10698 [Loa loa]
Length = 111
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Query: 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK---SGFAFIYMDDERDAEDAIRG 107
E + +F G DA +LE F +YG++ +V + GFAF+ +D RDAEDA++G
Sbjct: 6 ECLECKVFVGGLPNDASSEELEEAFSKYGRIKKVWLARRPPGFAFVEFEDSRDAEDAVKG 65
Query: 108 LDRTEFGRKGRRLRVEWT 125
LD T G R RVE++
Sbjct: 66 LDGTRIC--GVRPRVEFS 81
>gi|324504398|gb|ADY41900.1| Serine/arginine-rich splicing factor 1 [Ascaris suum]
Length = 233
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG----FAFIYMDDERDAEDAIRGLDRTE 112
I+ GN R D+E +F ++GKV VD+K FAF+ +D RDAEDA+R D +
Sbjct: 7 IYVGNLPTSVRTKDIEDIFTKFGKVLFVDLKDKRPPYFAFVEFEDPRDAEDAVRSRDGYD 66
Query: 113 FGRKGRRLRVEW 124
F G RLRVE+
Sbjct: 67 F--YGYRLRVEF 76
>gi|357516359|ref|XP_003628468.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
gi|355522490|gb|AET02944.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
Length = 273
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 77/172 (44%), Gaps = 15/172 (8%)
Query: 77 RYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGI 131
+YG + +D+K G+AF+ +D +DAEDAIRG D +F G RLRVE RG
Sbjct: 2 KYGHITHIDLKVPPRPPGYAFVEFEDVQDAEDAIRGRDGYDF--DGHRLRVEAAHGGRGN 59
Query: 132 R----RPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI---- 183
R S+ R +R S+ ++N P +DL+ H G + ++
Sbjct: 60 SSSRDRYSSHSNGRGGRGVSRRSEYRVIVNGLPSSASWQDLKDHMRKAGDVCFSQVFHDG 119
Query: 184 RRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSPDR 235
R V Y +D A+ + S+ + VR+ D RR+ SP R
Sbjct: 120 RGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKSYVRVREYDSRRDSRSPGR 171
>gi|47087341|ref|NP_998631.1| serine/arginine-rich splicing factor 6a [Danio rerio]
gi|32822789|gb|AAH55238.1| Splicing factor, arginine/serine-rich 6a [Danio rerio]
Length = 347
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
++ G Y R+ D++R F YGK+ VD+K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 4 VYIGRLSYHVREKDIQRFFSGYGKLLEVDLKNGYGFVEFEDTRDADDAVYELNGKEL 60
>gi|30687109|ref|NP_850280.1| arginine/serine-rich zinc knuckle-containing protein 33
[Arabidopsis thaliana]
gi|75331124|sp|Q8VYA5.1|RSZ33_ARATH RecName: Full=Serine/arginine-rich splicing factor RS2Z33; AltName:
Full=RS-containing zinc finger protein 33;
Short=At-RS2Z33; Short=At-RSZ33
gi|18252179|gb|AAL61922.1| unknown protein [Arabidopsis thaliana]
gi|21386957|gb|AAM47882.1| unknown protein [Arabidopsis thaliana]
gi|51971244|dbj|BAD44314.1| unknown protein [Arabidopsis thaliana]
gi|330254293|gb|AEC09387.1| arginine/serine-rich zinc knuckle-containing protein 33
[Arabidopsis thaliana]
Length = 290
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G R DLERLF RYG+V VDMK +AF+ D RDA+DA LD +F
Sbjct: 13 LYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRDF--D 70
Query: 117 GRRLRVEWTK 126
G R+ VE+++
Sbjct: 71 GSRITVEFSR 80
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 163 TRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
TRTRDLER F YG++ V ++R++AFV++ DA A + I+VE++
Sbjct: 22 TRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRDFDGSRITVEFS 79
>gi|357483947|ref|XP_003612260.1| Scaffold attachment factor B1 [Medicago truncatula]
gi|355513595|gb|AES95218.1| Scaffold attachment factor B1 [Medicago truncatula]
Length = 303
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 75/175 (42%), Gaps = 41/175 (23%)
Query: 152 TLFVINFDPYHTRTRDLERHFEPYGKIISV--------RIRRNFAFVQYEVQEDATRALD 203
TL+V T RDLE HF GK+ S RI R FAFV + EDA R +
Sbjct: 132 TLYVTGLSSRVT-ERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDTAEDANRCIK 190
Query: 204 ATNMSKLTDRVISVEYAVRDDDDRRNGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYG- 262
N S L R I+VE + R R R+P +P Y + + DYG
Sbjct: 191 YLNQSILEGRYITVERS-------------KRKRPRTP------TPGHYLGLKNTRDYGP 231
Query: 263 RGSSRSPYRRERGSPDYGRVRSP--SPYRRDR----------GSPDYGRNSSRSP 305
RG R ++ G DY RSP SPYR R GS Y R+ SRSP
Sbjct: 232 RGGDRGRHQGGFGRDDYPYHRSPRRSPYRGSRDYSPRHSPYGGSGRYRRDRSRSP 286
>gi|325190523|emb|CCA25022.1| premRNAsplicing factor SF2 putative [Albugo laibachii Nc14]
Length = 303
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 31/175 (17%)
Query: 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRG 107
M + I+ GN R ++E LF ++GK+ +D+K +AFI +D RDAEDAI
Sbjct: 1 MSKRIYVGNLPMSIRTREVEDLFYKHGKIQDIDLKLPLRPPAYAFIDFEDARDAEDAIEA 60
Query: 108 LDRTEFGRKGRRLRVEWT--------KHERGIRRPGGGSSARRPSTNTRPSKTLFVINFD 159
D ++ +G+RLRVE KH RG R G S T+ V N
Sbjct: 61 RDGYKY--EGQRLRVERANPKNIEKEKHVRGSRSKG--------------SNTVKVTNL- 103
Query: 160 PYHTRTRDLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKLTDR 213
P +DL+ G++ +I ++ V ++ +D A+ + +K +R
Sbjct: 104 PSRVSWQDLKDFMRKAGEVTFAKIDKHGDGIVDFKHHDDMKYAIKRLDDTKFRNR 158
>gi|9843663|emb|CAC03605.1| splicing factor RSZ33 [Arabidopsis thaliana]
Length = 290
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G R DLERLF RYG+V VDMK +AF+ D RDA+DA LD +F
Sbjct: 13 LYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRDF--D 70
Query: 117 GRRLRVEWTK 126
G R+ VE+++
Sbjct: 71 GSRITVEFSR 80
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 163 TRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
TRTRDLER F YG++ V ++R++AFV++ DA A + I+VE++
Sbjct: 22 TRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRDFDGSRITVEFS 79
>gi|425767261|gb|EKV05835.1| Pre-RNA splicing factor Srp2, putative [Penicillium digitatum
PHI26]
gi|425780059|gb|EKV18081.1| Pre-RNA splicing factor Srp2, putative [Penicillium digitatum Pd1]
Length = 303
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 107/243 (44%), Gaps = 29/243 (11%)
Query: 57 IFCGNFEYDARQSDLERLFRRYG--KVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFG 114
++ GN + +SD+E F +G K+ + + +GF FI DD+ DA D + ++F
Sbjct: 9 LYLGNLPRNVTKSDIEEHFSSHGSGKITEIKLMNGFGFIEYDDQLDARDIVPAFHGSDF- 67
Query: 115 RKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPY-HTRTRDLERHFE 173
KG RL V++ RG RR + RP +T+F + T +DL+
Sbjct: 68 -KGERLTVQFA---RGPRRKEAFQGPPDRNALPRPRRTMFRMQISGLPETSWQDLKDFAR 123
Query: 174 PYG-KIISVRIRRNF--AFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNG 230
G ++ R FV++E D A++ + + V+S +++ ++R
Sbjct: 124 QSGLDVVYSETGREQGRGFVEFETASDLKTAVEKLDQREFKGSVVSCVADIQNFEER--- 180
Query: 231 HSPDRN--RDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSPY 288
P R+ R RSP R P P E +Y R R P R D+ R RSP P
Sbjct: 181 --PVRDPYRSRSPP----RRPYPATME----EYDR---RIPPPRGYSPRDHYRERSPIPI 227
Query: 289 RRD 291
RRD
Sbjct: 228 RRD 230
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 147 TRPSKTLFVINFDPYHTRTRDLERHFEPY--GKIISVRIRRNFAFVQYEVQEDATRALDA 204
T S T + P + D+E HF + GKI +++ F F++Y+ Q DA + A
Sbjct: 2 TEVSSTRLYLGNLPRNVTKSDIEEHFSSHGSGKITEIKLMNGFGFIEYDDQLDARDIVPA 61
Query: 205 TNMSKLTDRVISVEYA 220
+ S ++V++A
Sbjct: 62 FHGSDFKGERLTVQFA 77
>gi|3249109|gb|AAC24092.1| Contains similarity to pre-mRNA splicing factor (SF2), P33 subunit
gb|M72709 from Homo sapiens. ESTs gb|T42588 and
gb|R65514 come from this gene [Arabidopsis thaliana]
Length = 237
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 7/74 (9%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG + +D+K G+AF+ +D RDA+DAI G D
Sbjct: 7 RTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRD 66
Query: 110 RTEFGRKGRRLRVE 123
+F G RLRVE
Sbjct: 67 GYDF--DGCRLRVE 78
>gi|195152782|ref|XP_002017315.1| GL22249 [Drosophila persimilis]
gi|198454070|ref|XP_001359460.2| GA20008 [Drosophila pseudoobscura pseudoobscura]
gi|194112372|gb|EDW34415.1| GL22249 [Drosophila persimilis]
gi|198132637|gb|EAL28606.2| GA20008 [Drosophila pseudoobscura pseudoobscura]
Length = 263
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 54/96 (56%), Gaps = 14/96 (14%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS----GFAFIYMDDERDAEDAIRGLDRTE 112
I+ GN D R D++ LF ++GKV VD+K+ FAF+ +D RDA+DA++ D +
Sbjct: 9 IYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPPFAFVEFEDARDADDAVKARDGYD 68
Query: 113 FGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTR 148
+ G RLRVE+ + GGG + R + N R
Sbjct: 69 Y--DGYRLRVEFPR--------GGGPGSYRGNRNDR 94
>gi|240848767|ref|NP_001155687.1| serine/arginine-rich splicing factor 1-like [Acyrthosiphon pisum]
gi|239789607|dbj|BAH71418.1| ACYPI006929 [Acyrthosiphon pisum]
Length = 244
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG----FAFIYMDDERDAEDAIRGLDRTE 112
I+ GN D R D++ LF ++GKV VD+K+ FAF+ DD RDAEDA+ D +
Sbjct: 8 IYVGNLPPDIRTKDIQDLFYKFGKVLFVDLKNQRGPPFAFVEFDDPRDAEDAVHARDGYD 67
Query: 113 FGRKGRRLRVEW 124
+ G RLRVE+
Sbjct: 68 Y--DGYRLRVEF 77
>gi|209876590|ref|XP_002139737.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
gi|209555343|gb|EEA05388.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
Length = 377
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 78/188 (41%), Gaps = 18/188 (9%)
Query: 47 IAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIR 106
+ A A R +F GN + DL F + G + ++++K F FI ++E AE A R
Sbjct: 1 MDALAANPRKVFVGNLPAGYAEQDLRDFFSKVGTISKLELKQRFCFIEYEEESQAEAAHR 60
Query: 107 GLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKT---------LFVIN 157
LD EFG G+R+ V+ H+ +R ++ + PS + V N
Sbjct: 61 ELDGVEFG--GQRIAVQ--PHDPLVRTKDVENTNKPQYNRPLPSDGRGPPRKHYRVCVFN 116
Query: 158 FDPYHTRTRDLERHFEPYGKIISVRIR----RNFAFVQYEVQEDATRALDATNMSKLTDR 213
D + RDL+ + G++ + + V+Y E+ RAL+ +
Sbjct: 117 LDE-NASWRDLKDYGRQIGEVNYSAVFHYQGQKVGVVEYLTVEEMKRALEEIPNLPFLGK 175
Query: 214 VISVEYAV 221
I E V
Sbjct: 176 TIRAEEDV 183
>gi|432936464|ref|XP_004082128.1| PREDICTED: serine/arginine-rich splicing factor 4-like isoform 2
[Oryzias latipes]
Length = 289
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 24/179 (13%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
+F G AR+ D+E+ F+ YG++ +++K+GF F+ DD RDA+DA+ L+ E
Sbjct: 23 VFIGRLSPQARERDVEKFFKGYGRIREINLKNGFGFVEFDDHRDADDAVYELNGKEL--L 80
Query: 117 GRRLRVEWTK-------HERGIRRPGGGSSARRPSTNT--------RPSKTLFVINFDPY 161
R+ +E + G+ R GGG R S NT R L V N
Sbjct: 81 SERVTIEHARSRRGRGGGPPGMARFGGGY---RQSRNTGSRYGPPVRTEHRLIVENLSS- 136
Query: 162 HTRTRDLERHFEPYGKIISVRIRR---NFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
+DL+ G++ V R N V++ + D A+ + ++L R + +
Sbjct: 137 RISWQDLKDLMRKAGEVTFVDAHRPTKNEGVVEFASRSDLKNAISKLDGTELNGRKLKI 195
>gi|432936462|ref|XP_004082127.1| PREDICTED: serine/arginine-rich splicing factor 4-like isoform 1
[Oryzias latipes]
Length = 272
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 18/176 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
+F G AR+ D+E+ F+ YG++ +++K+GF F+ DD RDA+DA+ L+ E
Sbjct: 6 VFIGRLSPQARERDVEKFFKGYGRIREINLKNGFGFVEFDDHRDADDAVYELNGKEL--L 63
Query: 117 GRRLRVEWTK-------HERGIRRPGGGSSARRPSTN-----TRPSKTLFVINFDPYHTR 164
R+ +E + G+ R GGG R + + R L V N
Sbjct: 64 SERVTIEHARSRRGRGGGPPGMARFGGGYRQSRNTGSRYGPPVRTEHRLIVENLSS-RIS 122
Query: 165 TRDLERHFEPYGKIISVRIRR---NFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
+DL+ G++ V R N V++ + D A+ + ++L R + +
Sbjct: 123 WQDLKDLMRKAGEVTFVDAHRPTKNEGVVEFASRSDLKNAISKLDGTELNGRKLKI 178
>gi|291231291|ref|XP_002735598.1| PREDICTED: RNA binding motif protein 4B-like isoform 1
[Saccoglossus kowalevskii]
Length = 238
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
+F GN + DL LF +YGKV D+ + F++MD E +A++A+ L+ EF
Sbjct: 11 VFVGNLSKSVQSRDLRDLFEKYGKVLECDVIKNYGFVHMDKEDEAKEALDALNSKEF--M 68
Query: 117 GRRLRVEWTKHERGIRRPGGGS 138
G ++VE + R + PG GS
Sbjct: 69 GTNIKVELST-SRVHKTPGMGS 89
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 83/192 (43%), Gaps = 28/192 (14%)
Query: 150 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSK 209
+ +FV N ++RDL FE YGK++ + +N+ FV + +++A ALDA N +
Sbjct: 8 ATKVFVGNLSK-SVQSRDLRDLFEKYGKVLECDVIKNYGFVHMDKEDEAKEALDALNSKE 66
Query: 210 LTDRVISVEYAVRDDDDR-------------RNGH-SPDRNRDRS-PDRGRRRSPSPYRR 254
I VE + R GH S D RDRS DRGR R Y
Sbjct: 67 FMGTNIKVELSTSRVHKTPGMGSKGECFKCGRQGHWSRDCGRDRSVEDRGRPRERDRY-- 124
Query: 255 ERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIG 314
G P R P R P+Y R R PYRRD Y R+ SRSP IG
Sbjct: 125 --GPPPRDRYYDYPPPPRRDFPPEYERERLYDPYRRDYPPEPYYRSRSRSP-------IG 175
Query: 315 HGRGPSRSPYRR 326
R PS PY R
Sbjct: 176 R-RFPSPPPYAR 186
>gi|79582138|ref|NP_683288.2| splicing factor, arginine/serine-rich 1/9 [Arabidopsis thaliana]
gi|4775271|emb|CAB42558.1| SF2/ASF-like splicing modulator Srp30, variant 1 [Arabidopsis
thaliana]
gi|332190280|gb|AEE28401.1| splicing factor, arginine/serine-rich 1/9 [Arabidopsis thaliana]
Length = 256
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 7/74 (9%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG + +D+K G+AF+ +D RDA+DAI G D
Sbjct: 7 RTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRD 66
Query: 110 RTEFGRKGRRLRVE 123
+F G RLRVE
Sbjct: 67 GYDF--DGCRLRVE 78
>gi|56797744|ref|NP_001008732.1| serine/arginine-rich splicing factor 6b [Danio rerio]
gi|56541079|gb|AAH86820.1| Splicing factor, arginine/serine-rich 6b [Danio rerio]
Length = 355
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y R+ D++R F YGK+ D+K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 4 VYIGKLSYHVREKDIQRFFGGYGKLMETDLKNGYGFVEFEDTRDADDAVYELNGKELC-- 61
Query: 117 GRRLRVEWTKHERG 130
G R+ VE H RG
Sbjct: 62 GERVIVE---HARG 72
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 161 YHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
YH R +D++R F YGK++ ++ + FV++E DA A+ N +L + VE+A
Sbjct: 11 YHVREKDIQRFFGGYGKLMETDLKNGYGFVEFEDTRDADDAVYELNGKELCGERVIVEHA 70
>gi|403362231|gb|EJY80837.1| hypothetical protein OXYTRI_21772 [Oxytricha trifallax]
Length = 236
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
+F GN + RQ DL F + G ++ K FAFI +ERD E+AI L+ +FG
Sbjct: 3 LFVGNIARNVRQEDLHEEFDKIGPC-TINFKGSFAFIEYKEERDGEEAINELNNKDFG-- 59
Query: 117 GRRLRVEWTK 126
G+++ +EW+K
Sbjct: 60 GQKIGIEWSK 69
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 152 TLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLT 211
+LFV N + R DL F+ G ++ + +FAF++Y+ + D A++ N
Sbjct: 2 SLFVGNI-ARNVRQEDLHEEFDKIGPC-TINFKGSFAFIEYKEERDGEEAINELNNKDFG 59
Query: 212 DRVISVEYAVR 222
+ I +E++ R
Sbjct: 60 GQKIGIEWSKR 70
>gi|388495254|gb|AFK35693.1| unknown [Lotus japonicus]
Length = 300
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G R DLER+F RYG+V VDMK +AF+ D RDA+DA LD +
Sbjct: 13 LYVGRLSSRTRSRDLERVFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYNLDGRDV--D 70
Query: 117 GRRLRVEWTK 126
G RL VE+ K
Sbjct: 71 GSRLIVEFAK 80
Score = 41.6 bits (96), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 163 TRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
TR+RDLER F YG++ V ++R++AFV++ DA A + + + VE+A
Sbjct: 22 TRSRDLERVFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYNLDGRDVDGSRLIVEFA 79
>gi|306966179|ref|NP_001182476.1| splicing factor, arginine/serine-rich 1B [Pan troglodytes]
gi|291405734|ref|XP_002719321.1| PREDICTED: splicing factor, arginine/serine-rich 1 [Oryctolagus
cuniculus]
gi|297272653|ref|XP_001103473.2| PREDICTED: splicing factor, arginine/serine-rich 1-like isoform 1
[Macaca mulatta]
gi|348562139|ref|XP_003466868.1| PREDICTED: serine/arginine-rich splicing factor 1-like isoform 2
[Cavia porcellus]
gi|119614898|gb|EAW94492.1| splicing factor, arginine/serine-rich 1 (splicing factor 2,
alternate splicing factor), isoform CRA_g [Homo sapiens]
Length = 253
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN-----TRPSKTLFVINFDPYHTRTR 166
++ G RLRVE+ + RG R GGG +R S+ V++ P +
Sbjct: 78 DY--DGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 167 DLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
DL+ H G + + R+ V++ +ED T A+ + +K
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
>gi|291224545|ref|XP_002732262.1| PREDICTED: splicing factor, arginine/serine-rich 4-like
[Saccoglossus kowalevskii]
Length = 274
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
Query: 52 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRT 111
M ++ G Y R+ D+ER FR YG++ +++K+GF F+ +D RD++DA+ L+
Sbjct: 25 TMGTRVYIGRLSYQTRERDVERFFRGYGRLREINLKNGFGFVEFEDPRDSDDAVYELNGK 84
Query: 112 EFGRKGRRLRVEWTKHERG 130
E G R+ +E H RG
Sbjct: 85 ELC--GERVTIE---HARG 98
>gi|410897813|ref|XP_003962393.1| PREDICTED: serine/arginine-rich splicing factor 4-like [Takifugu
rubripes]
Length = 288
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 38/57 (66%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
+F G+ AR+ D+E+ F+ YG++ +++K+GF F+ DD RDA+DA+ L+ E
Sbjct: 6 VFIGHLSPHARERDVEKFFKGYGRIREINLKNGFGFVEFDDHRDADDAVYELNGKEL 62
>gi|348518531|ref|XP_003446785.1| PREDICTED: serine/arginine-rich splicing factor 1-like [Oreochromis
niloticus]
Length = 264
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 7/73 (9%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E LF +YG + +D+K+ FAF+ DD RDAEDA+ G D
Sbjct: 17 IYVGNLPPDIRSKDVEDLFYKYGSIRDIDLKNRRGGPPFAFVQFDDPRDAEDAVYGRDGY 76
Query: 112 EFGRKGRRLRVEW 124
++ G RLRVE+
Sbjct: 77 DY--DGYRLRVEF 87
>gi|297736448|emb|CBI25319.3| unnamed protein product [Vitis vinifera]
Length = 278
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G R DLE LF RYG+V VDMK FAF+ D RDA+DA L+ +F
Sbjct: 45 LYVGRLSSRTRSRDLEDLFSRYGRVRDVDMKHDFAFVEFSDPRDADDARYSLNGRDF--D 102
Query: 117 GRRLRVEWTK 126
G R+ VE+ K
Sbjct: 103 GSRIIVEFAK 112
Score = 42.0 bits (97), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%)
Query: 139 SARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDA 198
S + P + R T + TR+RDLE F YG++ V ++ +FAFV++ DA
Sbjct: 30 SDKMPRYDDRHGSTRLYVGRLSSRTRSRDLEDLFSRYGRVRDVDMKHDFAFVEFSDPRDA 89
Query: 199 TRALDATNMSKLTDRVISVEYA 220
A + N I VE+A
Sbjct: 90 DDARYSLNGRDFDGSRIIVEFA 111
>gi|328871249|gb|EGG19620.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 299
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFG 114
R I+ G F + DLE F+++GK+ +DMK+GFAF+ D+E+ A AI +D E
Sbjct: 60 RRIYVGKFSSRTGEKDLEETFKKFGKILSLDMKAGFAFVEFDNEKSANQAIDEMDGKEV- 118
Query: 115 RKGRRLRVE 123
G +L V+
Sbjct: 119 -DGEKLIVQ 126
Score = 45.1 bits (105), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 153 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTD 212
++V F T +DLE F+ +GKI+S+ ++ FAFV+++ ++ A +A+D + ++
Sbjct: 62 IYVGKFSS-RTGEKDLEETFKKFGKILSLDMKAGFAFVEFDNEKSANQAIDEMDGKEVDG 120
Query: 213 RVISVE 218
+ V+
Sbjct: 121 EKLIVQ 126
>gi|403342322|gb|EJY70479.1| hypothetical protein OXYTRI_08772 [Oxytricha trifallax]
Length = 471
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 89/192 (46%), Gaps = 23/192 (11%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDM------KSGFAFIYMDDERDAEDAIRGLDR 110
IF GN + L+ F G + V + G+AFI +AE A++ L+
Sbjct: 188 IFVGNIPFTTDAETLKAKFEAIGTIVNVSIPMSGKRMKGYAFIKFSTRAEAEKAVKKLND 247
Query: 111 TEFGRKGRRLRVEWT---KHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRD 167
+F GR+L+V ++ + E+ ++ G + ++ T S T+F+ N Y T ++
Sbjct: 248 FDF--DGRQLKVNFSSGKEAEKREKKTGDENGEKKEQT---KSSTVFIGNL-SYSTNEQN 301
Query: 168 LERHFEPYGKIISVRI-------RRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
+ + + G+I VRI + FA V++E E A +A+ N + L R I V+ +
Sbjct: 302 IRKLLKDCGEIKGVRIALGEDGKMKGFAHVEFEDAESAEKAM-KFNGADLDGRNIKVDIS 360
Query: 221 VRDDDDRRNGHS 232
+ D R G S
Sbjct: 361 EKLRDKRAEGGS 372
>gi|390597906|gb|EIN07305.1| polyadenylate binding protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 668
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 78/184 (42%), Gaps = 32/184 (17%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDAIRGL 108
++ G + ++ L +F G V D V +S G+A++ + D E A+ L
Sbjct: 54 LYVGELDPTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYFNAADGERALEQL 113
Query: 109 DRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDL 168
+ + KGR R+ W++ + +R+ G G+ +F+ N D + L
Sbjct: 114 NYSLI--KGRACRIMWSQRDPALRKTGQGN--------------IFIKNLDD-AIDNKAL 156
Query: 169 ERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
F +G ++S ++ + + FV YE E A A+ A N L D+ + V + V
Sbjct: 157 HDTFAAFGNVLSCKVATDEMGRSKGYGFVHYETNEAAESAIKAVNGMLLNDKKVYVGHHV 216
Query: 222 RDDD 225
D
Sbjct: 217 SKKD 220
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 89/216 (41%), Gaps = 25/216 (11%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-------GFAFIYMDDERDAEDAIRGLD 109
++ N + +A + LF +G V ++ GF F+ + +A+ A+ L
Sbjct: 235 VYVKNIDPEANDDEFRELFTPFGNVTSAVLQRDEEGRSRGFGFVNFETHEEAQKAVDTLH 294
Query: 110 RTEFGRKGRRLRV----EWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRT 165
++F KGR+L V + ++ E +RR A+ + L++ N +
Sbjct: 295 DSDF--KGRKLFVSRAQKKSEREEELRR--SYEQAKMEKMSKYQGVNLYIKNLED-DVDD 349
Query: 166 RDLERHFEPYGKIISVRIRRN-------FAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
L FEP+G I S ++ R F FV + ++AT+A+ N + + + V
Sbjct: 350 EKLRDAFEPFGAITSAKVMRTEGGTSKGFGFVCFSSPDEATKAVAEMNNKMMGSKPLYVS 409
Query: 219 YAVRDDDDRRNGHS--PDRNRDRSPDRGRRRSPSPY 252
A R + R+ S RN+ R P+ Y
Sbjct: 410 LAQRREVRRQQLESQIAQRNQIRMQQAAAAGMPAGY 445
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 67/175 (38%), Gaps = 25/175 (14%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKSGFAFIYMDDERDAEDAIRGLD 109
IF N + L F +G V D + G+ F++ + AE AI+ ++
Sbjct: 142 IFIKNLDDAIDNKALHDTFAAFGNVLSCKVATDEMGRSKGYGFVHYETNEAAESAIKAVN 201
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLE 169
K +V H R ++ TN ++V N DP +
Sbjct: 202 GMLLNDK----KVYVGHHVSKKDRQAKLDEQKKQFTN------VYVKNIDP-EANDDEFR 250
Query: 170 RHFEPYGKIISVRIRRN-------FAFVQYEVQEDATRALDATNMSKLTDRVISV 217
F P+G + S ++R+ F FV +E E+A +A+D + S R + V
Sbjct: 251 ELFTPFGNVTSAVLQRDEEGRSRGFGFVNFETHEEAQKAVDTLHDSDFKGRKLFV 305
>gi|395505264|ref|XP_003756963.1| PREDICTED: serine/arginine-rich splicing factor 6 isoform 1
[Sarcophilus harrisii]
Length = 340
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y R+ D++R F YG++ VD+K+G+ F+ +D RDA+DA+ L+ +
Sbjct: 4 VYIGRLSYHVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKDLC-- 61
Query: 117 GRRLRVEWTKHERGIRR 133
G R+ VE H RG RR
Sbjct: 62 GERVIVE---HARGPRR 75
>gi|156095500|ref|XP_001613785.1| splicing factor, arginine/serine-rich 1 [Plasmodium vivax Sal-1]
gi|148802659|gb|EDL44058.1| splicing factor, arginine/serine-rich 1, putative [Plasmodium
vivax]
Length = 314
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 10/162 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMK-----SGFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D+E FR+YG + + D+K + FAFI +D RDA DAI+ D
Sbjct: 10 IYVGNLPSHVTPRDVENEFRKYGTILKCDVKKTVSGAAFAFIEFEDARDAADAIKEKDGC 69
Query: 112 EFGRKGRRLRVE--WTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLE 169
+FG G +LRVE + + G GG +R + + ++ P +DL+
Sbjct: 70 DFG--GNKLRVEVPFNARDNGKYSSRGGRGMMGRGMKSRRGRYVVEVSGLPLSGSWQDLK 127
Query: 170 RHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
H G+ + +N V + +ED A++ N S
Sbjct: 128 DHLREAGECGHADVFKNGLGEVSFFHKEDMLEAIEKFNGSTF 169
>gi|52140014|gb|AAU29335.1| ASF/SF2-like pre-mRNA splicing factor SRP31'' [Zea mays]
gi|224035263|gb|ACN36707.1| unknown [Zea mays]
gi|413944990|gb|AFW77639.1| ASF/SF2-like pre-mRNA splicing factor SRP31 [Zea mays]
Length = 284
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 73/170 (42%), Gaps = 26/170 (15%)
Query: 57 IFCGNFEYDARQSDLERLF--------RRYGKVDRVDMKS-----GFAFIYMDDERDAED 103
I+ GN D R+ +++ LF R YG++ +D+K GFAF+ +D RDAED
Sbjct: 9 IYVGNLPGDIREREVDDLFYKGRQCGLRMYGRIVEIDLKIPPRPPGFAFVEFEDARDAED 68
Query: 104 AIRGLDRTEFGRKGRRLRVEWTKHERGI---RRPGGGSSARRPSTNTRPSKTLFVINFDP 160
AI G D F G RLRVE RG R SSA + + R + V P
Sbjct: 69 AIYGRDGYNF--DGHRLRVELAHGGRGTSSFDRSSSYSSAGQRGASKRSDYRVMVTGL-P 125
Query: 161 YHTRTRDLERHFEPYGKIISVRIRRNFA-------FVQYEVQEDATRALD 203
+DL+ H G + + R + YE + A R LD
Sbjct: 126 SSASWQDLKDHMRRAGDVCFTDVYREAGATIGIADYTNYEDMKHAIRKLD 175
>gi|388509088|gb|AFK42610.1| unknown [Medicago truncatula]
Length = 305
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G R DLER+F RYG V VDMK +AF+ D RDA+DA LD +
Sbjct: 13 LYVGRLSSRTRSRDLERVFSRYGSVRDVDMKHDYAFVEFRDPRDADDARYNLDGRDI--D 70
Query: 117 GRRLRVEWTK 126
G RL VE+ K
Sbjct: 71 GSRLIVEFAK 80
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 163 TRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
TR+RDLER F YG + V ++ ++AFV++ DA A + + + VE+A
Sbjct: 22 TRSRDLERVFSRYGSVRDVDMKHDYAFVEFRDPRDADDARYNLDGRDIDGSRLIVEFA 79
>gi|389584162|dbj|GAB66895.1| splicing factor arginine/serine-rich 1 [Plasmodium cynomolgi strain
B]
Length = 316
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 10/162 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMK-----SGFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D+E FR+YG + + D+K + FAFI +D RDA DAI+ D
Sbjct: 10 IYVGNLPSHVTPRDVENEFRKYGTILKCDVKKTVSGAAFAFIEFEDARDAADAIKEKDGC 69
Query: 112 EFGRKGRRLRVE--WTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLE 169
+FG G +LRVE + + G GG +R + + ++ P +DL+
Sbjct: 70 DFG--GNKLRVEVPFNARDNGKYNSRGGRGMMGRGMKSRRGRYVVEVSGLPLSGSWQDLK 127
Query: 170 RHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
H G+ + +N V + +ED A++ N S
Sbjct: 128 DHLREAGECGHADVFKNGLGEVSFFHKEDMLEAIEKFNGSTF 169
>gi|449274700|gb|EMC83778.1| Splicing factor, arginine/serine-rich 5 [Columba livia]
Length = 265
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
+F G AR+ D+ER F+ YG++ +D+K GF F+ DD RDA+DA+ LD E
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFDDPRDADDAVYELDGKEL 62
Score = 38.5 bits (88), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 153 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTD 212
+F+ +P R +D+ER F+ YG+I + ++R F FV+++ DA A+ + +L
Sbjct: 6 VFIGRLNP-AAREKDVERFFKGYGRIRDIDLKRGFGFVEFDDPRDADDAVYELDGKELCS 64
Query: 213 RVISVEY 219
+++E+
Sbjct: 65 ERVTIEH 71
>gi|126291113|ref|XP_001371339.1| PREDICTED: serine/arginine-rich splicing factor 6-like [Monodelphis
domestica]
Length = 340
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y R+ D++R F YG++ VD+K+G+ F+ +D RDA+DA+ L+ +
Sbjct: 4 VYIGRLSYHVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKDLC-- 61
Query: 117 GRRLRVEWTKHERGIRR 133
G R+ VE H RG RR
Sbjct: 62 GERVIVE---HARGPRR 75
>gi|402591118|gb|EJW85048.1| hypothetical protein WUBG_04041 [Wuchereria bancrofti]
Length = 141
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Query: 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDAEDAIRG 107
E + +F G DA +LE F +YG++ +V + GFAFI +D RDAEDA++G
Sbjct: 6 ECLECKVFVGGLPNDASSEELEEAFSKYGRIKKVWLARRPPGFAFIEFEDSRDAEDAVKG 65
Query: 108 LDRTEFGRKGRRLRVEWT 125
LD T G R RVE++
Sbjct: 66 LDGTRIC--GVRPRVEFS 81
>gi|312077156|ref|XP_003141179.1| hypothetical protein LOAG_05594 [Loa loa]
Length = 214
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLD 109
M ++ G Y A + D+ER FR YG++ + +K+G+AF+ D RDAEDA+ L+
Sbjct: 1 MGSRVYVGRLSYRAHERDIERFFRGYGRITEILLKNGYAFVEFSDRRDAEDAVHDLN 57
>gi|147788227|emb|CAN71592.1| hypothetical protein VITISV_015931 [Vitis vinifera]
Length = 267
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG++ V++K + F+ ++ RDAEDAIRG D
Sbjct: 7 RTIYVGNLPSDIREYEIEDLFYKYGRILDVELKIPPRPPCYCFVEFENSRDAEDAIRGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERG 130
F G RLRVE RG
Sbjct: 67 GYNF--DGCRLRVELAHGGRG 85
>gi|356574963|ref|XP_003555612.1| PREDICTED: pre-mRNA-splicing factor SF2-like [Glycine max]
Length = 264
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 87/201 (43%), Gaps = 28/201 (13%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R ++E LF +YG + +D+K G+AF+ +D RDAEDAI+ D
Sbjct: 7 RTIYVGNLPGDVRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDARDAEDAIQYRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERG----IRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRT 165
F G RLRVE RG + R S +R S ++ P
Sbjct: 67 GYNF--DGFRLRVELAHGGRGYSSSVDRYSSYSGGSGSRGVSRRSDYRVLVTGLPPSASW 124
Query: 166 RDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR--D 223
+DL+ H G + ++ R + T +D TN + +YA+R D
Sbjct: 125 QDLKDHMRKAGDVCFSQVFRE--------RGGMTGIVDYTNYDDM-------KYAIRKLD 169
Query: 224 DDDRRNGHSPDRNRDRSPDRG 244
D + RN S R R DRG
Sbjct: 170 DSEFRNAFSRAFIRVREYDRG 190
>gi|393216848|gb|EJD02338.1| polyadenylate binding protein [Fomitiporia mediterranea MF3/22]
Length = 701
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 32/176 (18%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDAIRGL 108
++ G + ++ L +F G V D V +S G+A++ + D E A+ L
Sbjct: 58 LYVGELDSTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 117
Query: 109 DRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDL 168
+ + K R R+ W++ + +R+ G G+ +F+ N D + L
Sbjct: 118 NYSLI--KNRACRIMWSQRDPALRKTGQGN--------------IFIKNLDE-QIDHKAL 160
Query: 169 ERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
F +G ++S ++ R F FV Y+ E A A+ A N L D+ + V
Sbjct: 161 HDTFAAFGNVLSCKVATDENGRSRGFGFVHYDTAEAADTAIKAVNGMLLNDKKVFV 216
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 71/180 (39%), Gaps = 15/180 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-------GFAFIYMDDERDAEDAIRGLD 109
++ N + + + +F ++G+V ++ GF F+ D A+ A+ L
Sbjct: 239 LYVKNLDTEVTDDEFNDMFAKFGEVTSAVVQKDEEGKSKGFGFVNFKDHESAQAAVDALH 298
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLE 169
TE K + K ER A+ + L++ N + + L
Sbjct: 299 DTELNGKKLFVTRAQKKAEREEELRKSYEQAKMEKLSKYQGANLYIKNLEDDMDDDK-LR 357
Query: 170 RHFEPYGKIISVRIRRN-------FAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 222
FEP+G I S +I R+ F FV Y E+AT+A+ N L + + V A R
Sbjct: 358 AEFEPFGTITSCKIMRDEKGTSKGFGFVCYSSPEEATKAVAEMNNKMLGSKPLYVSPAQR 417
>gi|428673079|gb|EKX73992.1| pre-mRNA splicing factor, putative [Babesia equi]
Length = 325
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 93/228 (40%), Gaps = 53/228 (23%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG-------FAFIYMDDERDAEDAIRGLD 109
+F GN D+ +F +YG++ +D+K G +AFI + R AEDA+ D
Sbjct: 15 VFVGNLPEKVDDRDIHEIFDKYGEIRDIDIKHGKTSNYTSYAFIEFESVRSAEDAVECRD 74
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLF--VINFDPYHTRTRD 167
EF R RLRVE+ ++ R P S R S P++T + VI+ P+ R +
Sbjct: 75 GYEFDRY--RLRVEFAGEKKSRRHPRS-SYEDRGSRYPPPTRTDYRLVISNLPHGCRWQH 131
Query: 168 LERHFEPYGKIISVRIRRNFAFVQYEVQED---ATRALDATNMSKLTDRVISVEYAVRDD 224
L+ H G + V I+ +V + + D A R LD T +S D S ++ D
Sbjct: 132 LKDHMRKAGPVGYVNIQHGRGYVDFMHKSDMKYALRKLDGTELSTSED---SARIRIKKD 188
Query: 225 DDRRNGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRR 272
D YRR R SR YRR
Sbjct: 189 D--------------------------YRRSR---------SRDAYRR 201
>gi|402581590|gb|EJW75538.1| splicing factor, partial [Wuchereria bancrofti]
Length = 212
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLD 109
++ G Y A + D+ER FR YG++ + +K+G+AF+ D RDAEDA+ L+
Sbjct: 5 VYVGRLSYRAHERDIERFFRGYGRITEILLKNGYAFVEFSDRRDAEDAVHDLN 57
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 160 PYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRAL-DATNMSKLTDRVI 215
Y RD+ER F YG+I + ++ +AFV++ + DA A+ D S L DRVI
Sbjct: 11 SYRAHERDIERFFRGYGRITEILLKNGYAFVEFSDRRDAEDAVHDLNGRSLLGDRVI 67
>gi|195038647|ref|XP_001990768.1| GH18077 [Drosophila grimshawi]
gi|193894964|gb|EDV93830.1| GH18077 [Drosophila grimshawi]
Length = 252
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS----GFAFIYMDDERDAEDAIRGLDRTE 112
I+ GN D R D++ LF ++GKV VD+K+ FAF+ +D RDA+DA++ D +
Sbjct: 9 IYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPPFAFVEFEDARDADDAVKARDGYD 68
Query: 113 FGRKGRRLRVEW 124
+ G RLRVE+
Sbjct: 69 Y--DGYRLRVEF 78
>gi|30693839|ref|NP_190918.3| RNA recognition motif and CCHC-type zinc finger domain-containing
protein [Arabidopsis thaliana]
gi|75334513|sp|Q9FYB7.1|RSZ32_ARATH RecName: Full=Serine/arginine-rich splicing factor RS2Z32; AltName:
Full=RS-containing zinc finger protein 32;
Short=At-RS2Z32; Short=At-RSZ32
gi|9795142|emb|CAB67657.2| splicing factor-like protein [Arabidopsis thaliana]
gi|222422875|dbj|BAH19424.1| AT3G53500 [Arabidopsis thaliana]
gi|332645577|gb|AEE79098.1| RNA recognition motif and CCHC-type zinc finger domain-containing
protein [Arabidopsis thaliana]
Length = 284
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G R DLERLF RYG+V VDMK +AF+ D RDA+DA LD +F
Sbjct: 13 LYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRDF--D 70
Query: 117 GRRLRVEWTK 126
G R+ VE ++
Sbjct: 71 GSRITVEASR 80
>gi|426241493|ref|XP_004014625.1| PREDICTED: serine/arginine-rich splicing factor 6 isoform 2 [Ovis
aries]
Length = 339
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 85/173 (49%), Gaps = 20/173 (11%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y+ R+ D++R F YG++ +D+K+G+ F+ +D RDA+DA+
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVY---EPNAKLC 60
Query: 117 GRRLRVEWTKHERGIRRP------GGGSSARRPSTNTR---PSKTLFVINFDPYHTRT-- 165
G R+ VE H RG R GGG S+RR S + P +T F + + +R
Sbjct: 61 GERVIVE---HARGPSREGSYSSGGGGYSSRRTSGRDKYGPPVRTEFRLIVENLSSRCSW 117
Query: 166 RDLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
+DL+ G++ + + R N +++ D RALD + +++ R I
Sbjct: 118 QDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNI 170
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 161 YHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
Y+ R +D++R F YG+++ + ++ + FV++E DA A+ N +RVI VE+A
Sbjct: 11 YNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYEPNAKLCGERVI-VEHA 69
>gi|357511859|ref|XP_003626218.1| Arginine/serine-rich splicing factor [Medicago truncatula]
gi|355501233|gb|AES82436.1| Arginine/serine-rich splicing factor [Medicago truncatula]
Length = 296
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 86/190 (45%), Gaps = 13/190 (6%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R ++E LF ++G + +++K G+AF+ +D RDAEDAIR D
Sbjct: 7 RTIYVGNLPGDIRLREVEDLFYKFGPIVDIELKIPPRPPGYAFVEFEDARDAEDAIRYRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN--TRPSKTLFVINFDPYHTRTRD 167
+F G RLRVE RG S+ + ++ S+ ++ P +D
Sbjct: 67 GYKF--DGFRLRVELAHGGRGYSSSVDRYSSYSSGSRGVSKHSEYRVLVTGLPPSASWQD 124
Query: 168 LERHFEPYGKIISVRIRRN----FAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 223
L+ H G + ++ R+ V+Y ED A+ + S+ + VR+
Sbjct: 125 LKDHMRRAGDVCFSQVFRDRGGMTGIVEYTNYEDMKYAIRKLDDSEFRNAFSWAYIRVRE 184
Query: 224 DDDRRNGHSP 233
D RR SP
Sbjct: 185 YDRRRYTRSP 194
>gi|344273957|ref|XP_003408785.1| PREDICTED: serine/arginine-rich splicing factor 5-like [Loxodonta
africana]
Length = 271
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
+F G AR+ D+ER F+ YG++ +D+K GF F+ +D RDA+DA+ LD E
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIKDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
>gi|223648456|gb|ACN10986.1| Splicing factor, arginine/serine-rich 5 [Salmo salar]
Length = 315
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
+F G AR+ D+E+ F+ YG++ V++K+GF F+ DD RDA+DA+ L+ E
Sbjct: 6 VFIGRLSPHARERDVEKFFKGYGRIREVNLKNGFGFVEFDDHRDADDAVYELNGKEL 62
>gi|320169407|gb|EFW46306.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 200
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG----FAFIYMDDERDAEDAIRGLDRTE 112
+F G + D R DLE +F+ YG++ R D+K G F F+ +D RDAEDA+ E
Sbjct: 3 LFIGRLDRDTRVRDLEDIFQPYGRLVRCDIKGGAVYSFGFVEFEDRRDAEDAL----NRE 58
Query: 113 FGR--KGRRLRVEWTKHE 128
GR +G R+ VEW K +
Sbjct: 59 NGRNVRGVRIAVEWAKGQ 76
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 152 TLFVINFDPYHTRTRDLERHFEPYGKIISVRIR----RNFAFVQYEVQEDATRALDATNM 207
LF+ D TR RDLE F+PYG+++ I+ +F FV++E + DA AL+ N
Sbjct: 2 ALFIGRLD-RDTRVRDLEDIFQPYGRLVRCDIKGGAVYSFGFVEFEDRRDAEDALNRENG 60
Query: 208 SKLTDRVISVEYA 220
+ I+VE+A
Sbjct: 61 RNVRGVRIAVEWA 73
>gi|195388956|ref|XP_002053144.1| GJ23504 [Drosophila virilis]
gi|194151230|gb|EDW66664.1| GJ23504 [Drosophila virilis]
Length = 247
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS----GFAFIYMDDERDAEDAIRGLDRTE 112
I+ GN D R D++ LF ++GKV VD+K+ FAF+ +D RDA+DA++ D +
Sbjct: 9 IYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPPFAFVEFEDARDADDAVKARDGYD 68
Query: 113 FGRKGRRLRVEW 124
+ G RLRVE+
Sbjct: 69 Y--DGYRLRVEF 78
>gi|444720822|gb|ELW61591.1| Vascular endothelial zinc finger 1 [Tupaia chinensis]
Length = 399
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 7/73 (9%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 112 EFGRKGRRLRVEW 124
++ G RLRVE+
Sbjct: 78 DY--DGYRLRVEF 88
>gi|291224547|ref|XP_002732263.1| PREDICTED: splicing factor, arginine/serine-rich 4-like
[Saccoglossus kowalevskii]
Length = 261
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 6/78 (7%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y R+ D+ER FR +G + V++K+GF F+ DD RDA+DA+ L+ +
Sbjct: 5 VYIGRLSYQTRERDVERFFRGFGHLREVNLKNGFGFVEFDDPRDADDAVYELNGKDLC-- 62
Query: 117 GRRLRVEWTKHERG-IRR 133
G R+ +E H RG +RR
Sbjct: 63 GERVIIE---HARGPVRR 77
>gi|392870838|gb|EJB12075.1| pre-RNA splicing factor Srp2, variant [Coccidioides immitis RS]
Length = 399
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 92/226 (40%), Gaps = 32/226 (14%)
Query: 57 IFCGNFEYDARQSDLERLFRRYG--KVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFG 114
F + + D+E F ++G K+ + + SGF FI +D DA D + T+F
Sbjct: 106 FFAWTLLFPVTKQDVEEHFNQHGSGKITDIKLMSGFGFIEYEDALDARDVVPAYHGTDF- 164
Query: 115 RKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPY-HTRTRDLERHFE 173
KG RL V++ RG R S S RP +T + + T +DL+
Sbjct: 165 -KGSRLTVQFA---RGPRHKETFSGPSDRSNAPRPRRTPYRMQISGLPETSWQDLKDFAR 220
Query: 174 PYGKII----SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDD--- 226
G + ++R FV++E D A++ + + ++ ++ DD
Sbjct: 221 QSGLDVVYSETLRDHEGRGFVEFETGADLKTAIEKLDGREFKGSRVTCTQDIQAPDDRPV 280
Query: 227 ----------RRNGHSPDRNRDRSPDRG-------RRRSPSPYRRE 255
RR G+ P + DR P RG R RSP P RR+
Sbjct: 281 RDPYRSRSPVRRGGYPPMDDYDRRPPRGYSPRGHYRERSPPPMRRD 326
>gi|156545752|ref|XP_001605411.1| PREDICTED: serine/arginine-rich splicing factor 1-like [Nasonia
vitripennis]
Length = 257
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 90/204 (44%), Gaps = 31/204 (15%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS----GFAFIYMDDERDAEDAIRGLDRTE 112
I+ GN D R D++ LF ++GKV VD+K+ FAF+ DD RDAEDA+ D +
Sbjct: 22 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRRGPPFAFVEFDDPRDAEDAVHARDGYD 81
Query: 113 FGRKGRRLRVEW-------------TKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFD 159
+ G RLRVE+ + R G S R P R S+ ++
Sbjct: 82 Y--DGYRLRVEFPRGGGPSSSFRGRGGGDSRGRGDMGNSRGRGPPA--RRSQYRVLVTGL 137
Query: 160 PYHTRTRDLERHFEPYGKIISVRIRRN----FAFVQYEVQEDATRALDATNMSKLTDRVI 215
P +DL+ H G + + ++ F++YE + A + LD + V
Sbjct: 138 PPSGSWQDLKDHMREAGDVCFADVYKDGTGVVEFLRYEDMKYAVKKLDDSRFRSHEGEVA 197
Query: 216 SVEYAVRDDDDRRNGHSPDRNRDR 239
+ V++D +G S DR+R
Sbjct: 198 YIR--VKED----HGGSGDRSRSE 215
>gi|601931|gb|AAA57153.1| neurofilament-H, partial [Oryctolagus cuniculus]
Length = 511
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 86/187 (45%), Gaps = 38/187 (20%)
Query: 229 NGHSPDRNRDRSPDRGRR----------RSP----SPYRRERGSPDYGRGSSRSPYRRER 274
SP++ +SP++ + +SP SP + E SP+ + SP + E
Sbjct: 193 KAKSPEKEEAKSPEKAKSPVEVKSPAEAKSPEKAKSPVKEEAKSPEKAK----SPVKEEA 248
Query: 275 GSPDYGRVRSP----SPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGP--SRSPYRRDR 328
SP+ + +SP SP + + SP+ + SP K+E + + P ++SP + +
Sbjct: 249 KSPE--KAKSPEKAKSPVKEEAKSPEKAK----SPVKEEAKSPEKAKSPEKAKSPVKEEA 302
Query: 329 GSPENGHGSSPSPYRKGKPSPNNGRGP--SRSPYERERPSPENGRG--GSRSPYRRERPS 384
SPE SP ++ SP + P ++SP + E SPE + ++SP + E S
Sbjct: 303 KSPEKAK----SPVKEEAKSPEKAKSPEKAKSPVKEEAKSPEKAKSPEKAKSPVKEEAKS 358
Query: 385 PDNGRVP 391
P+ + P
Sbjct: 359 PEKAKSP 365
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 52/198 (26%)
Query: 239 RSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGR----VRSP--------- 285
+SP++ + SP + E SP+ +SP + E SP+ + V+SP
Sbjct: 175 KSPEKAK----SPEKEEAKSPEKA----KSPEKEEAKSPEKAKSPVEVKSPAEAKSPEKA 226
Query: 286 -SPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGP--SRSPYRRDRGSPENGHGSSPSPY 342
SP + + SP+ +SP K+E + + P ++SP + + SPE SP
Sbjct: 227 KSPVKEEAKSPEKA----KSPVKEEAKSPEKAKSPEKAKSPVKEEAKSPEKAK----SPV 278
Query: 343 RKGKPSPNNGRGP--SRSPYERERPSPENGRGGSRSPYRRERPSPDNGRVPSPNSMPEPR 400
++ SP + P ++SP + E SPE +SP + E SP+ + P
Sbjct: 279 KEEAKSPEKAKSPEKAKSPVKEEAKSPEKA----KSPVKEEAKSPEKAKSP--------- 325
Query: 401 DSPGYDGADSPINERYRS 418
+ A SP+ E +S
Sbjct: 326 -----EKAKSPVKEEAKS 338
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 28/186 (15%)
Query: 239 RSPDRGRRRSPSPYRRERGSPDYGRG--SSRSPYRRERGSPDYGRVRSPSPYRRDRGSPD 296
+SP++ + SP + E SP + ++SP + E SP+ + SP + + SP+
Sbjct: 155 KSPEKAK----SPVKEEAKSPAEAKSPEKAKSPEKEEAKSPEKAK----SPEKEEAKSPE 206
Query: 297 YGRNSSRSPYKKERAAIGHGRGP--SRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRG 354
+ SP E + + P ++SP + + SPE SP ++ SP +
Sbjct: 207 KAK----SPV--EVKSPAEAKSPEKAKSPVKEEAKSPEKAK----SPVKEEAKSPEKAKS 256
Query: 355 P--SRSPYERERPSPENGRGGSRSPYRRERPSPDNGRVPSPNSMPEPRDSPGYDGADSPI 412
P ++SP + E SPE +SP + E SP+ + P P ++ + A SP+
Sbjct: 257 PEKAKSPVKEEAKSPEKA----KSPVKEEAKSPEKAKSPEKAKSPVKEEAKSPEKAKSPV 312
Query: 413 NERYRS 418
E +S
Sbjct: 313 KEEAKS 318
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 34/190 (17%)
Query: 239 RSPDRGRRRSPSPYRRERGSPDYGRG--SSRSPYRRERGSPDYGR----VRSPSPYRRDR 292
+SP++ + SP+ E SP+ + ++SP + E SP+ + V+SP+ +
Sbjct: 105 KSPEKAK--SPA----EAKSPEKAKSPEKAKSPVKEEAKSPEKAKSPVEVKSPA----EA 154
Query: 293 GSPDYGRNSSRSPYKKERAAIGHGRGP--SRSPYRRDRGSPENGHGSSPSPYRKGKPSPN 350
SP+ + SP K+E + + P ++SP + + SPE SP ++ SP
Sbjct: 155 KSPEKAK----SPVKEEAKSPAEAKSPEKAKSPEKEEAKSPEKAK----SPEKEEAKSPE 206
Query: 351 NGRGPS--RSPYERERPSPENGRGGSRSPYRRERPSPDNGRVPSPNSMPEPRDSPGYDGA 408
+ P +SP E + SPE + SP + E SP+ + P P + + A
Sbjct: 207 KAKSPVEVKSPAEAK--SPEKAK----SPVKEEAKSPEKAKSPVKEEAKSPEKAKSPEKA 260
Query: 409 DSPINERYRS 418
SP+ E +S
Sbjct: 261 KSPVKEEAKS 270
>gi|297820078|ref|XP_002877922.1| hypothetical protein ARALYDRAFT_323893 [Arabidopsis lyrata subsp.
lyrata]
gi|297323760|gb|EFH54181.1| hypothetical protein ARALYDRAFT_323893 [Arabidopsis lyrata subsp.
lyrata]
Length = 284
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G R DLERLF RYG+V VDMK +AF+ D RDA+DA LD +F
Sbjct: 13 LYVGRLSSRTRARDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRDF--D 70
Query: 117 GRRLRVEWTK 126
G R+ VE ++
Sbjct: 71 GSRITVEASR 80
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 163 TRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRA 201
TR RDLER F YG++ V ++R++AFV++ DA A
Sbjct: 22 TRARDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60
>gi|195110201|ref|XP_001999670.1| GI24651 [Drosophila mojavensis]
gi|193916264|gb|EDW15131.1| GI24651 [Drosophila mojavensis]
Length = 246
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS----GFAFIYMDDERDAEDAIRGLDRTE 112
I+ GN D R D++ LF ++GKV VD+K+ FAF+ +D RDA+DA++ D +
Sbjct: 9 IYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPPFAFVEFEDARDADDAVKARDGYD 68
Query: 113 FGRKGRRLRVEW 124
+ G RLRVE+
Sbjct: 69 Y--DGYRLRVEF 78
>gi|301116808|ref|XP_002906132.1| pre-mRNA-splicing factor SF2 [Phytophthora infestans T30-4]
gi|262107481|gb|EEY65533.1| pre-mRNA-splicing factor SF2 [Phytophthora infestans T30-4]
Length = 297
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 10/90 (11%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
++ GN D R ++E +F +YG++ +D+K FAF+ +D RDAEDAIRG D
Sbjct: 6 VYVGNLPMDIRTREVEDIFYKYGRIRDIDVKFPSRPPAFAFVDFEDARDAEDAIRGRDGY 65
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSAR 141
++ G RLRVE G RR SAR
Sbjct: 66 DY--DGARLRVEAAN---GGRRESARDSAR 90
>gi|194744791|ref|XP_001954876.1| GF16525 [Drosophila ananassae]
gi|190627913|gb|EDV43437.1| GF16525 [Drosophila ananassae]
Length = 253
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS----GFAFIYMDDERDAEDAIRGLDRTE 112
I+ GN D R D++ LF ++GKV VD+K+ FAF+ +D RDA+DA++ D +
Sbjct: 9 IYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPPFAFVEFEDARDADDAVKARDGYD 68
Query: 113 FGRKGRRLRVEW 124
+ G RLRVE+
Sbjct: 69 Y--DGYRLRVEF 78
>gi|226496385|ref|NP_001151386.1| LOC100285019 [Zea mays]
gi|195646352|gb|ACG42644.1| pre-mRNA-splicing factor SF2 [Zea mays]
Length = 275
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 72/162 (44%), Gaps = 19/162 (11%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R+ +++ LF +YG++ +D+K GFAF+ +D DAEDAI G D
Sbjct: 9 IYVGNLPGDIREREVDDLFYKYGRIVEIDLKIPPRPPGFAFVEFEDA-DAEDAIYGRDGY 67
Query: 112 EFGRKGRRLRVEWTKHERGI---RRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDL 168
F G RLRVE RG R SSA + + R + V P +DL
Sbjct: 68 NF--DGHRLRVELAHGGRGTSSFDRSSSYSSAGQRGASKRSDYRVMVTGL-PSSASWQDL 124
Query: 169 ERHFEPYGKIISVRIRRNFA-------FVQYEVQEDATRALD 203
+ H G + + R + YE + A R LD
Sbjct: 125 KDHMRRAGDVCFTDVYREAGATIGIADYTNYEDMKHAIRKLD 166
>gi|225709420|gb|ACO10556.1| Serine-arginine protein 55 [Caligus rogercresseyi]
Length = 244
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ GN + R+ D+E+ + +G++ V +KSG+ F+ DD RDA+D + +D +F +
Sbjct: 7 VYIGNLPENVRERDVEKFLKDHGRIREVVIKSGYGFVEFDDPRDADDVVNDMDGKDF--Q 64
Query: 117 GRRLRVEWT 125
G R+RVE
Sbjct: 65 GGRIRVEMA 73
>gi|358336433|dbj|GAA54942.1| splicing factor arginine/serine-rich 1/9 [Clonorchis sinensis]
Length = 251
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS----GFAFIYMDDERDAEDAIRGLDRTE 112
I+ GN D + D+E LF +YG + +D+KS FAFI +DE DA DA+RG D
Sbjct: 8 IYVGNLPPDVKTRDVENLFSKYGPIAEIDLKSRRGPPFAFIEFEDELDAADAVRGRDGYN 67
Query: 113 FGRKGRRLRVEW 124
F G LRVE+
Sbjct: 68 F--DGYALRVEF 77
>gi|289739445|gb|ADD18470.1| alternative splicing factor ASF/SF2 [Glossina morsitans morsitans]
Length = 236
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG----FAFIYMDDERDAEDAIRGLDRTE 112
I+ GN D R D++ LF ++GKV VD+K+ FAF+ +D RDA+DA++ D +
Sbjct: 9 IYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPPFAFVEFEDARDADDAVKARDGYD 68
Query: 113 FGRKGRRLRVEW 124
+ G RLRVE+
Sbjct: 69 Y--DGYRLRVEF 78
>gi|148238297|ref|NP_001085381.1| serine/arginine-rich splicing factor 4 [Xenopus laevis]
gi|49257226|gb|AAH71160.1| MGC83263 protein [Xenopus laevis]
Length = 259
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 84/179 (46%), Gaps = 20/179 (11%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
+F G AR+ D+E+ F+ YG++ +++K+GF F+ DD RDA+DA+ L+ +
Sbjct: 6 VFIGRLSPHARERDVEKFFKGYGRIREINLKNGFGFVEFDDHRDADDAVYELNGKVLCNE 65
Query: 117 GRRLRVEWTKHERGIRRPGGG-------------SSARRPSTNTRPSKTLFVINFDPYHT 163
R+ +E ++ RG GG S++ PS P +T I + +
Sbjct: 66 --RVTIELARNRRGRGGMMGGGGGRYPNRFAYRQSNSGGPSRYGPPVRTEHRIIVENLSS 123
Query: 164 RT--RDLERHFEPYGKIISV---RIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
R +DL+ G++ V R RN V++ D ALD + +L+ R I +
Sbjct: 124 RVSWQDLKDFMRKAGEVTYVDAHRSNRNEGVVEFASYSDMKSALDKLDGVELSGRKIKL 182
>gi|291228498|ref|XP_002734207.1| PREDICTED: splicing factor, arginine/serine-rich 1-like isoform 1
[Saccoglossus kowalevskii]
Length = 230
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 14/163 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG----FAFIYMDDERDAEDAIRGLDRTE 112
I+ GN D R D+E +F +YG + +D+K+ F+F+ +D+RDAEDA+RG D +
Sbjct: 16 IYVGNLPPDIRVKDIEDIFYKYGNILDIDLKNRRGPPFSFVEFEDKRDAEDAVRGRDGYD 75
Query: 113 FGRKGRRLRVEW----TKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDL 168
+ G RLRVE+ G GGG R R S+ +++ P +DL
Sbjct: 76 Y--DGYRLRVEFPRGGGGGGGGGGGLGGGPGRGRGGPPARRSEYRCLVSGLPPTGSWQDL 133
Query: 169 ERHFEPYGKIISVRIRRN----FAFVQYEVQEDATRALDATNM 207
+ H G + + R+ F++YE + A + LD T
Sbjct: 134 KDHMREAGDVCFADVYRDGTGVVEFLRYEDMKYAAKHLDDTKF 176
>gi|378729160|gb|EHY55619.1| hypothetical protein HMPREF1120_03749 [Exophiala dermatitidis
NIH/UT8656]
Length = 833
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 67/156 (42%), Gaps = 30/156 (19%)
Query: 153 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTD 212
LFV N RDL F +G++ + I++ + FVQY AL A S++
Sbjct: 379 LFVGNLASEKVTKRDLFHVFHKHGRLAQISIKQAYGFVQYLEASSCQAALQAEQGSEIRG 438
Query: 213 RVISVEYAVRDDDDRRNGHSPDRNRDRSPDRGR-----------------------RRSP 249
R I +E + + R R R RSPDRG RSP
Sbjct: 439 RKIHLEVSKPQKNTRNQAQGNKRRRSRSPDRGTARQHDRYGRHDFRDDRNRRDYRSTRSP 498
Query: 250 SPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSP 285
SP R RG DY RG+++SP R +PD GR SP
Sbjct: 499 SP-RHFRGRDDY-RGNAQSP----RFAPD-GRQGSP 527
>gi|147907282|ref|NP_001079543.1| keratin 5, gene 1 b [Xenopus laevis]
gi|28278124|gb|AAH44085.1| MGC52712 protein [Xenopus laevis]
Length = 261
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 36/53 (67%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLD 109
+F G AR+ D+E+ F+ YG++ +++K+GF F+ DD RDA+DA+ L+
Sbjct: 6 VFIGRLSPHARERDVEKFFKGYGRIREINLKNGFGFVEFDDHRDADDAVYELN 58
>gi|197099026|ref|NP_001126337.1| serine/arginine-rich splicing factor 1 [Pongo abelii]
gi|68724975|sp|Q5R7H2.3|SRSF1_PONAB RecName: Full=Serine/arginine-rich splicing factor 1; AltName:
Full=Splicing factor, arginine/serine-rich 1
gi|55731147|emb|CAH92288.1| hypothetical protein [Pongo abelii]
Length = 248
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN-----TRPSKTLFVINFDPYHTRTR 166
++ G RLRVE+ + RG R GGG +R S+ V++ P +
Sbjct: 78 DY--DGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 167 DLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
DL+ H G + + R+ V++ +ED T A+ + +K
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
>gi|5902076|ref|NP_008855.1| serine/arginine-rich splicing factor 1 isoform 1 [Homo sapiens]
gi|34328400|ref|NP_775550.2| serine/arginine-rich splicing factor 1 isoform 1 [Mus musculus]
gi|83921643|ref|NP_001033096.1| serine/arginine-rich splicing factor 1 [Sus scrofa]
gi|115497078|ref|NP_001069862.1| serine/arginine-rich splicing factor 1 [Bos taurus]
gi|157818019|ref|NP_001103022.1| splicing factor, arginine/serine-rich 1B [Rattus norvegicus]
gi|306966181|ref|NP_001182477.1| splicing factor, arginine/serine-rich 1 [Equus caballus]
gi|306966183|ref|NP_001182478.1| splicing factor, arginine/serine-rich 1 [Macaca mulatta]
gi|73966540|ref|XP_866729.1| PREDICTED: serine/arginine-rich splicing factor 1 isoform 2 [Canis
lupus familiaris]
gi|296202380|ref|XP_002748436.1| PREDICTED: serine/arginine-rich splicing factor 1-like isoform 1
[Callithrix jacchus]
gi|332246407|ref|XP_003272345.1| PREDICTED: serine/arginine-rich splicing factor 1 [Nomascus
leucogenys]
gi|344285799|ref|XP_003414647.1| PREDICTED: serine/arginine-rich splicing factor 1-like [Loxodonta
africana]
gi|397493084|ref|XP_003817443.1| PREDICTED: serine/arginine-rich splicing factor 1 [Pan paniscus]
gi|403279712|ref|XP_003931390.1| PREDICTED: serine/arginine-rich splicing factor 1 [Saimiri
boliviensis boliviensis]
gi|410980663|ref|XP_003996696.1| PREDICTED: serine/arginine-rich splicing factor 1 [Felis catus]
gi|426347344|ref|XP_004041313.1| PREDICTED: serine/arginine-rich splicing factor 1 [Gorilla gorilla
gorilla]
gi|730773|sp|Q07955.2|SRSF1_HUMAN RecName: Full=Serine/arginine-rich splicing factor 1; AltName:
Full=Alternative-splicing factor 1; Short=ASF-1;
AltName: Full=Splicing factor, arginine/serine-rich 1;
AltName: Full=pre-mRNA-splicing factor SF2, P33 subunit
gi|68725069|sp|Q6PDM2.3|SRSF1_MOUSE RecName: Full=Serine/arginine-rich splicing factor 1; AltName:
Full=ASF/SF2; AltName: Full=Pre-mRNA-splicing factor
SRp30a; AltName: Full=Splicing factor,
arginine/serine-rich 1
gi|114152157|sp|Q3YLA6.3|SRSF1_PIG RecName: Full=Serine/arginine-rich splicing factor 1; AltName:
Full=Splicing factor, arginine/serine-rich 1
gi|122145605|sp|Q0VCY7.1|SRSF1_BOVIN RecName: Full=Serine/arginine-rich splicing factor 1; AltName:
Full=Splicing factor, arginine/serine-rich 1
gi|179075|gb|AAA35565.1| alternative [Homo sapiens]
gi|338047|gb|AAA03476.1| SF2p33 [Homo sapiens]
gi|16307434|gb|AAH10264.1| Splicing factor, arginine/serine-rich 1 [Homo sapiens]
gi|21104372|dbj|BAB93456.1| OK/SW-cl.3 [Homo sapiens]
gi|28386236|gb|AAH46773.1| Sfrs1 protein [Mus musculus]
gi|35192949|gb|AAH58627.1| Splicing factor, arginine/serine-rich 1 (ASF/SF2) [Mus musculus]
gi|61364743|gb|AAX42596.1| splicing factor arginine/serine-rich 1 [synthetic construct]
gi|73810229|gb|AAZ86088.1| splicing factor arginine/serine-rich 1 [Sus scrofa]
gi|73810231|gb|AAZ86089.1| splicing factor arginine/serine-rich 1 [Sus scrofa]
gi|74151692|dbj|BAE29641.1| unnamed protein product [Mus musculus]
gi|111306978|gb|AAI19931.1| Splicing factor, arginine/serine-rich 1 [Bos taurus]
gi|119614891|gb|EAW94485.1| splicing factor, arginine/serine-rich 1 (splicing factor 2,
alternate splicing factor), isoform CRA_a [Homo sapiens]
gi|119614892|gb|EAW94486.1| splicing factor, arginine/serine-rich 1 (splicing factor 2,
alternate splicing factor), isoform CRA_a [Homo sapiens]
gi|149053807|gb|EDM05624.1| rCG34610, isoform CRA_c [Rattus norvegicus]
gi|189053478|dbj|BAG35644.1| unnamed protein product [Homo sapiens]
gi|296477057|tpg|DAA19172.1| TPA: splicing factor, arginine/serine-rich 1 [Bos taurus]
gi|336088097|dbj|BAK39908.1| splicing factor, arginine/serine-rich 1, transcript variant 1
[Cricetulus griseus]
gi|344243483|gb|EGV99586.1| Splicing factor, arginine/serine-rich 1 [Cricetulus griseus]
gi|380784743|gb|AFE64247.1| serine/arginine-rich splicing factor 1 isoform 1 [Macaca mulatta]
gi|383420721|gb|AFH33574.1| serine/arginine-rich splicing factor 1 isoform 1 [Macaca mulatta]
gi|384941916|gb|AFI34563.1| serine/arginine-rich splicing factor 1 isoform 1 [Macaca mulatta]
gi|410224700|gb|JAA09569.1| serine/arginine-rich splicing factor 1 [Pan troglodytes]
gi|410263644|gb|JAA19788.1| serine/arginine-rich splicing factor 1 [Pan troglodytes]
gi|410308964|gb|JAA33082.1| serine/arginine-rich splicing factor 1 [Pan troglodytes]
gi|410351427|gb|JAA42317.1| serine/arginine-rich splicing factor 1 [Pan troglodytes]
gi|410351431|gb|JAA42319.1| serine/arginine-rich splicing factor 1 [Pan troglodytes]
gi|431890828|gb|ELK01707.1| Splicing factor, arginine/serine-rich 1 [Pteropus alecto]
Length = 248
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN-----TRPSKTLFVINFDPYHTRTR 166
++ G RLRVE+ + RG R GGG +R S+ V++ P +
Sbjct: 78 DY--DGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 167 DLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
DL+ H G + + R+ V++ +ED T A+ + +K
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
>gi|66360300|ref|XP_627232.1| splicing factor SRP40 like 2x RRM domains [Cryptosporidium parvum
Iowa II]
gi|46228840|gb|EAK89710.1| splicing factor SRP40 like 2x RRM domains [Cryptosporidium parvum
Iowa II]
Length = 416
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 18/175 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
+F GN + DL+ F + G++ ++++K F FI +DE AE A R LD EFG
Sbjct: 19 VFVGNLPPGYAEQDLKDFFSKVGEIKKLELKQRFCFIEYEDETQAEAAHRELDGVEFG-- 76
Query: 117 GRRLRVEWTKHERGIRRPGGGSSAR------RPSTNTRPSKTLF---VINFDPYHTRTRD 167
G+ + V+ H+ +R ++ + PS P + F V N D + RD
Sbjct: 77 GQVIAVQ--PHDPMVRNKETNAANKPQYNRPLPSDGRGPPRKHFRVCVFNLDD-NASWRD 133
Query: 168 LERHFEPYGKIISVRIR----RNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
L+ + G++ + + V+Y E+ RAL+ + I VE
Sbjct: 134 LKDYGRQIGEVNYSAVFHYQGQKVGVVEYLTVEEMKRALEEIPNLPFLGKSIRVE 188
>gi|452839557|gb|EME41496.1| hypothetical protein DOTSEDRAFT_73793 [Dothistroma septosporum
NZE10]
Length = 327
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 18/166 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYG--KVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFG 114
++ GN +A ++D+E F +G ++ + + +GF FI D DA D + +EF
Sbjct: 11 LYLGNLPRNATKADVENHFNTHGTGEIMEIKLMNGFGFIEYKDAMDARDVVPAFHGSEF- 69
Query: 115 RKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTL--FVINFDPYHTRTRDLERHF 172
G RL V++ RG RP G +P RP +T+ I P+ T +DL+
Sbjct: 70 -MGERLVVQFA---RGSNRPREGFE-HQPRMAPRPRRTVHRMTITGLPFETSWQDLKDFA 124
Query: 173 EPYG-KIISVRIRR-------NFAFVQYEVQEDATRALDATNMSKL 210
G ++ + R +V+YE D A++ + S+
Sbjct: 125 RQSGLDVVYSEVNRERDPSGTGKGYVEYETAADLATAVEKLDNSEF 170
>gi|432889874|ref|XP_004075374.1| PREDICTED: serine/arginine-rich splicing factor 1-like [Oryzias
latipes]
Length = 245
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 11/163 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAFI +D RDA+DA+ G D
Sbjct: 16 IYVGNLPPDIRTKDVEDVFYKYGTIRDIDLKNRRGGPPFAFIEFEDPRDADDAVYGRDGY 75
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSAR---RPSTNTRPSKTLFVINFDPYHTRTRDL 168
++ G RLRVE+ + RG R GG R +R S+ V++ P +DL
Sbjct: 76 DY--DGYRLRVEFPRSGRGSRGGFGGIGGAPRGRYGPPSRRSEYRVVVSGLPQSGSWQDL 133
Query: 169 ERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
+ H G + + R+ V++ +ED T A+ + +K
Sbjct: 134 KDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 176
>gi|338721826|ref|XP_001500325.3| PREDICTED: serine/arginine-rich splicing factor 4 [Equus caballus]
Length = 497
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 77/151 (50%), Gaps = 18/151 (11%)
Query: 78 YGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGG 137
YGK+ VD+K+G+ F+ DD RDA+DA+ L+ + G R+ VE H RG RR G
Sbjct: 21 YGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLC--GERVIVE---HARGPRRDGSY 75
Query: 138 SSAR-----RPSTNTR---PSKTLFVINFDPYHTRT--RDLERHFEPYGKII---SVRIR 184
S R R S + P++T + + + +R +DL+ + G++ + + R
Sbjct: 76 GSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGR 135
Query: 185 RNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
+N +++ D RAL+ + +++ R I
Sbjct: 136 KNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 166
>gi|224123080|ref|XP_002318990.1| predicted protein [Populus trichocarpa]
gi|222857366|gb|EEE94913.1| predicted protein [Populus trichocarpa]
Length = 224
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 7/74 (9%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R ++ GN D R ++E LF +YG + +D+K G+AF+ ++ RDAEDAIRG D
Sbjct: 6 RTLYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEEARDAEDAIRGRD 65
Query: 110 RTEFGRKGRRLRVE 123
F G RLRVE
Sbjct: 66 GYNF--DGCRLRVE 77
>gi|195451089|ref|XP_002072763.1| GK13511 [Drosophila willistoni]
gi|194168848|gb|EDW83749.1| GK13511 [Drosophila willistoni]
Length = 263
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS----GFAFIYMDDERDAEDAIRGLDRTE 112
I+ GN D R D++ LF ++GKV VD+K+ FAF+ +D RDA+DA++ D +
Sbjct: 9 IYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPPFAFVEFEDARDADDAVKARDGYD 68
Query: 113 FGRKGRRLRVEW 124
+ G RLRVE+
Sbjct: 69 Y--DGYRLRVEF 78
>gi|325186279|emb|CCA20785.1| splicing factor putative [Albugo laibachii Nc14]
Length = 275
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 81/185 (43%), Gaps = 19/185 (10%)
Query: 41 SHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYM 95
SH LSI + M + IF GN + + +LE+ F +GK+ V +K FAFI
Sbjct: 12 SHPSLSIHSIPTMPK-IFVGNLPQEISEPELEKTFGEFGKIVNVILKFPRRPPPFAFIEY 70
Query: 96 DDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFV 155
+D RDAEDA++ + E G +RVE +++ G ++R R T F
Sbjct: 71 EDLRDAEDAVQQMHGKEL--HGAEIRVEISRN--------GPKASRDEKFGGRHHGTQFR 120
Query: 156 INFD--PYHTRTRDLERHFEPYGKIISVRI-RRNFAFVQYEVQEDATRALDATNMSKLTD 212
+ P +DL+ G ++ + RR + Q++ RA+ +KL
Sbjct: 121 VELSNIPRSVSWQDLKDFLRIGGVVVHADVDRRGNGVASFTNQQEMERAIRKLKDAKLNG 180
Query: 213 RVISV 217
I +
Sbjct: 181 ERIKI 185
>gi|21358097|ref|NP_652611.1| SF2, isoform A [Drosophila melanogaster]
gi|386765902|ref|NP_001247139.1| SF2, isoform B [Drosophila melanogaster]
gi|194901262|ref|XP_001980171.1| GG20059 [Drosophila erecta]
gi|195349404|ref|XP_002041235.1| GM15444 [Drosophila sechellia]
gi|7243684|gb|AAF43413.1|AF232773_1 SR family splicing factor SF2 [Drosophila melanogaster]
gi|7331146|gb|AAF60294.1|AF234157_1 SR family splicing factor [Drosophila melanogaster]
gi|7300132|gb|AAF55300.1| SF2, isoform A [Drosophila melanogaster]
gi|15292149|gb|AAK93343.1| LD40489p [Drosophila melanogaster]
gi|190651874|gb|EDV49129.1| GG20059 [Drosophila erecta]
gi|194122840|gb|EDW44883.1| GM15444 [Drosophila sechellia]
gi|220946268|gb|ACL85677.1| SF2-PA [synthetic construct]
gi|220955952|gb|ACL90519.1| SF2-PA [synthetic construct]
gi|383292748|gb|AFH06457.1| SF2, isoform B [Drosophila melanogaster]
Length = 255
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG----FAFIYMDDERDAEDAIRGLDRTE 112
I+ GN D R D++ LF ++GKV VD+K+ FAF+ +D RDA+DA++ D +
Sbjct: 9 IYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPPFAFVEFEDARDADDAVKARDGYD 68
Query: 113 FGRKGRRLRVEW 124
+ G RLRVE+
Sbjct: 69 Y--DGYRLRVEF 78
>gi|195501014|ref|XP_002097620.1| GE26323 [Drosophila yakuba]
gi|194183721|gb|EDW97332.1| GE26323 [Drosophila yakuba]
Length = 254
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG----FAFIYMDDERDAEDAIRGLDRTE 112
I+ GN D R D++ LF ++GKV VD+K+ FAF+ +D RDA+DA++ D +
Sbjct: 9 IYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPPFAFVEFEDARDADDAVKARDGYD 68
Query: 113 FGRKGRRLRVEW 124
+ G RLRVE+
Sbjct: 69 Y--DGYRLRVEF 78
>gi|291228500|ref|XP_002734208.1| PREDICTED: splicing factor, arginine/serine-rich 1-like isoform 2
[Saccoglossus kowalevskii]
Length = 244
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 6/72 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS----GFAFIYMDDERDAEDAIRGLDRTE 112
I+ GN D R D+E +F +YG + +D+K+ F+F+ +D+RDAEDA+RG D +
Sbjct: 16 IYVGNLPPDIRVKDIEDIFYKYGNILDIDLKNRRGPPFSFVEFEDKRDAEDAVRGRDGYD 75
Query: 113 FGRKGRRLRVEW 124
+ G RLRVE+
Sbjct: 76 Y--DGYRLRVEF 85
>gi|297849206|ref|XP_002892484.1| hypothetical protein ARALYDRAFT_470995 [Arabidopsis lyrata subsp.
lyrata]
gi|297338326|gb|EFH68743.1| hypothetical protein ARALYDRAFT_470995 [Arabidopsis lyrata subsp.
lyrata]
Length = 265
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 74/179 (41%), Gaps = 40/179 (22%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R ++E LF +YG + +D+K G+AF+ +D RDA+DAI G D
Sbjct: 7 RTIYVGNLPGDIRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHER--------------GIRRPGGGSSARRPSTNTRPSKTLFV 155
+F G RLRVE R G R P S+ R T PS +
Sbjct: 67 GYDF--DGCRLRVEIAHGGRRGSSSVDRYSSSYTGSRAPSRRSAYRVLVTGLPPSASW-- 122
Query: 156 INFDPYHTRTRDLERHFEPYGKIISVRIRRN-------FAFVQYEVQEDATRALDATNM 207
+DL+ H G + + R+ + Y+ + A R LD T
Sbjct: 123 ----------QDLKDHMRKAGDVCFSEVFRDRGRMSGVVDYSNYDDMKYAIRKLDDTEF 171
>gi|417398268|gb|JAA46167.1| Putative serine/arginine-rich splicing factor 5 [Desmodus rotundus]
Length = 278
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
+F G AR+ D+ER F+ YG++ +D+K GF F+ +D RDA+DA+ LD E
Sbjct: 6 VFIGRLNPSAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
>gi|148669917|gb|EDL01864.1| splicing factor, arginine/serine-rich 1 (ASF/SF2), isoform CRA_b
[Mus musculus]
Length = 193
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN-----TRPSKTLFVINFDPYHTRTR 166
++ G RLRVE+ + RG R GGG +R S+ V++ P +
Sbjct: 78 DY--DGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 167 DLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
DL+ H G + + R+ V++ +ED T A+ + +K
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
>gi|60811245|gb|AAX36166.1| splicing factor arginine/serine-rich 1 [synthetic construct]
Length = 249
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN-----TRPSKTLFVINFDPYHTRTR 166
++ G RLRVE+ + RG R GGG +R S+ V++ P +
Sbjct: 78 DY--DGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 167 DLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
DL+ H G + + R+ V++ +ED T A+ + +K
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
>gi|388515619|gb|AFK45871.1| unknown [Medicago truncatula]
Length = 270
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 142 RPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISV--------RIRRNFAFVQYE 193
R T P TL+V T RDLE HF GK+ S RI R FAFV +
Sbjct: 53 REVNATNPGNTLYVTGLSSRVT-DRDLEDHFSKEGKVASCFLVVEPRTRISRGFAFVTMD 111
Query: 194 VQEDATRALDATNMSKLTDRVISVE 218
EDA R + N S L R I+VE
Sbjct: 112 SHEDAERCIKHLNQSVLEGRYITVE 136
>gi|357517877|ref|XP_003629227.1| ELAV-like protein [Medicago truncatula]
gi|355523249|gb|AET03703.1| ELAV-like protein [Medicago truncatula]
Length = 270
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 142 RPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISV--------RIRRNFAFVQYE 193
R T P TL+V T RDLE HF GK+ S RI R FAFV +
Sbjct: 53 REVNATNPGNTLYVTGLSSRVT-DRDLEDHFSKEGKVASCFLVVEPRTRISRGFAFVTMD 111
Query: 194 VQEDATRALDATNMSKLTDRVISVE 218
EDA R + N S L R I+VE
Sbjct: 112 SHEDAERCIKHLNQSVLEGRYITVE 136
>gi|335307313|ref|XP_003360793.1| PREDICTED: serine/arginine-rich splicing factor 5-like [Sus scrofa]
Length = 221
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
+F G AR+ D+ER F+ YG++ +D+K GF F+ +D RDA+DA+ LD E
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
>gi|426241491|ref|XP_004014624.1| PREDICTED: serine/arginine-rich splicing factor 6 isoform 1 [Ovis
aries]
Length = 344
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 25/178 (14%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y+ R+ D++R F YG++ +D+K+G+ F+ +D RDA+DA+
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVY---EPNAKLC 60
Query: 117 GRRLRVEWTKHERG-----------IRRPGGGSSARRPSTNTR---PSKTLFVINFDPYH 162
G R+ VE H RG + GGG S+RR S + P +T F + +
Sbjct: 61 GERVIVE---HARGPXXXXXXFSSHDKGGGGGYSSRRTSGRDKYGPPVRTEFRLIVENLS 117
Query: 163 TRT--RDLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
+R +DL+ G++ + + R N +++ D RALD + +++ R I
Sbjct: 118 SRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNI 175
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 161 YHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
Y+ R +D++R F YG+++ + ++ + FV++E DA A+ N +RVI VE+A
Sbjct: 11 YNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYEPNAKLCGERVI-VEHA 69
>gi|313227858|emb|CBY23007.1| unnamed protein product [Oikopleura dioica]
Length = 336
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN A D+E FR++G++ + +K+GF F+ DD RDAEDAI ++
Sbjct: 1 MGKVFIGNLTDRAEGRDVEDAFRKFGRIKEISLKNGFGFVEFDDVRDAEDAIHEMNGERL 60
Query: 114 GRKGRRLRVEWTK 126
G R+ VE K
Sbjct: 61 C--GDRITVELAK 71
>gi|307133720|ref|NP_001182516.1| splicing factor, arginine/serine-rich 5 [Equus caballus]
Length = 271
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
+F G AR+ D+ER F+ YG++ +D+K GF F+ +D RDA+DA+ LD E
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
>gi|54020785|ref|NP_001005638.1| keratin 5, gene 1 [Xenopus (Silurana) tropicalis]
gi|49250524|gb|AAH74634.1| keratin 5, gene 1 [Xenopus (Silurana) tropicalis]
Length = 262
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 36/53 (67%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLD 109
+F G AR+ D+E+ F+ YG++ +++K+GF F+ DD RDA+DA+ L+
Sbjct: 6 VFIGRLSPHARERDVEKFFKGYGRIREINLKNGFGFVEFDDHRDADDAVYELN 58
>gi|297816162|ref|XP_002875964.1| hypothetical protein ARALYDRAFT_906222 [Arabidopsis lyrata subsp.
lyrata]
gi|297321802|gb|EFH52223.1| hypothetical protein ARALYDRAFT_906222 [Arabidopsis lyrata subsp.
lyrata]
Length = 301
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 76/186 (40%), Gaps = 40/186 (21%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E LF +YG++ +++K + F+ + RDAEDAI+G D
Sbjct: 7 RSIYVGNLPGDIREHEIEDLFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN---------------------TR 148
F G RLRVE R G SS RR +R
Sbjct: 67 GYNF--DGCRLRVELAHGGR-----GQSSSDRRGGYGGGGGGGYGGGGGGGGSARFGVSR 119
Query: 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN----FAFVQYEVQED---ATRA 201
S+ ++ P +DL+ H G + + R+ + V Y +D A R
Sbjct: 120 HSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRK 179
Query: 202 LDATNM 207
LD T
Sbjct: 180 LDDTEF 185
>gi|355754034|gb|EHH57999.1| hypothetical protein EGM_07756 [Macaca fascicularis]
Length = 248
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 13/165 (7%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN-----TRPSKTLFVINFDPYHTRTR 166
++ G RLRVE+ + RG R G G +R S+ V++ P +
Sbjct: 78 DY--YGYRLRVEFPRSGRGTGRGGSGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 167 DLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
DL+ H G + + R+ V++ +ED T A+ + +K
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
>gi|313227405|emb|CBY22552.1| unnamed protein product [Oikopleura dioica]
Length = 318
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 92/221 (41%), Gaps = 55/221 (24%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G R D++ F+ YG++ + +K+ +AF+ +DERDA DA++ LD +
Sbjct: 8 VWMGGLPERVRSRDIDDFFKGYGRIVDISIKTKYAFVEFEDERDAADAVKDLDDQKL--N 65
Query: 117 GRRLRVEWTK----HERGIRRPG--------------------------GGSSARRPSTN 146
G R+R+E +K R +R G G S +R P+
Sbjct: 66 GSRVRLEVSKGCKDKYRDFQRTGRVRYRSYSKSVSPGRRRHRSRSPVGKGRSRSRSPARG 125
Query: 147 T----------------RPSKTLFVINFDPYHTRT--RDLERHFEPYGKII-----SVRI 183
+ P KT + + D +R +DL+ G++ I
Sbjct: 126 SDRRETFYSKPAYKKYGAPEKTRWTVEVDNLSSRCSWQDLKDFMRKAGEVTYGDAHGSDI 185
Query: 184 RRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDD 224
RN V YE ++DA RA++ + + R + + + VR++
Sbjct: 186 GRNRGVVCYEREDDAKRAIEELDGREFNGRDVKLAFKVREE 226
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 13/118 (11%)
Query: 160 PYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 219
P R+RD++ F+ YG+I+ + I+ +AFV++E + DA A+ + KL + +E
Sbjct: 14 PERVRSRDIDDFFKGYGRIVDISIKTKYAFVEFEDERDAADAVKDLDDQKLNGSRVRLEV 73
Query: 220 AVRDDDDRRNGHSPDRNRDR------SPDRGRRRSPSPYRRERGSPDYGRGSSRSPYR 271
+ D R+ R R R SP R R RS SP + GR SRSP R
Sbjct: 74 SKGCKDKYRDFQRTGRVRYRSYSKSVSPGRRRHRSRSPVGK-------GRSRSRSPAR 124
>gi|449274709|gb|EMC83787.1| Splicing factor, arginine/serine-rich 4, partial [Columba livia]
Length = 257
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
+F G+ AR+ D+E+ F+ YG++ + +K+GF F+ +D RDA+DAI L+ E
Sbjct: 6 VFVGHLSSRARERDVEKFFKGYGRIREIHLKNGFGFVEFEDHRDADDAIYELNGKEL 62
>gi|343426008|emb|CBQ69540.1| related to pre-mrna splicing factor srp55 [Sporisorium reilianum
SRZ2]
Length = 248
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 79/183 (43%), Gaps = 27/183 (14%)
Query: 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 112
M ++ G D R+ D+E LFR YG++ V + F F+ + RDAEDA++ D
Sbjct: 1 MSTRVYIGKLPADVRRGDIEDLFRDYGRLYDVRIMGSFGFVEFEHPRDAEDAVKDFDGKN 60
Query: 113 FGRKGRRLRVEWTKH-ERGIRRPGGGSS---ARRPSTNTRPS------------------ 150
F G R+ V+ K ER P G +S RR PS
Sbjct: 61 F--MGERILVQHAKSGERRRAEPAGYASDPYDRRGGARDAPSSRYGAPPPPRREPRLRRG 118
Query: 151 KTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNF---AFVQYEVQEDATRALDATNM 207
+ VI+ P +T +DL+ +G I + N F++Y+ ++D RALD
Sbjct: 119 QFRCVISNLPPNTSWQDLKDIGREHGSISFADVDPNNPDEGFIEYDNRDDYERALDKIEG 178
Query: 208 SKL 210
+L
Sbjct: 179 IEL 181
>gi|89273959|emb|CAJ82241.1| splicing factor, arginine/serine-rich 5 [Xenopus (Silurana)
tropicalis]
Length = 261
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 36/53 (67%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLD 109
+F G AR+ D+E+ F+ YG++ +++K+GF F+ DD RDA+DA+ L+
Sbjct: 6 VFIGRLSPHARERDVEKFFKGYGRIREINLKNGFGFVEFDDHRDADDAVYELN 58
>gi|45120092|ref|NP_957161.1| serine/arginine-rich splicing factor 5a [Danio rerio]
gi|37681945|gb|AAQ97850.1| splicing factor, arginine/serine-rich 5 [Danio rerio]
Length = 259
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
+F G AR+ D+E+ F+ YG++ +++K+GF F+ DD RDA+DA+ L+ E
Sbjct: 6 VFIGRLSPHARERDVEKFFKGYGRIREINLKNGFGFVEFDDYRDADDAVYELNGKEL 62
>gi|357134837|ref|XP_003569022.1| PREDICTED: uncharacterized protein LOC100826232 [Brachypodium
distachyon]
Length = 335
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G R DLE LF RYG++ V++K +AFI D RDA+DA LD +
Sbjct: 13 LYVGRLSSRTRTRDLEYLFSRYGRIREVELKRDYAFIEYSDPRDADDAQYNLDGRDV--D 70
Query: 117 GRRLRVEWTKHERGIRRPGGGSSAR 141
G R+ VE+ K GI R GGS R
Sbjct: 71 GSRIIVEFAK---GIPRGPGGSRER 92
Score = 45.1 bits (105), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%)
Query: 143 PSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRAL 202
P + R K+ + TRTRDLE F YG+I V ++R++AF++Y DA A
Sbjct: 2 PRYDDRYGKSRLYVGRLSSRTRTRDLEYLFSRYGRIREVELKRDYAFIEYSDPRDADDAQ 61
Query: 203 DATNMSKLTDRVISVEYA 220
+ + I VE+A
Sbjct: 62 YNLDGRDVDGSRIIVEFA 79
>gi|342878568|gb|EGU79899.1| hypothetical protein FOXB_09574 [Fusarium oxysporum Fo5176]
Length = 819
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 89/199 (44%), Gaps = 24/199 (12%)
Query: 121 RVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIIS 180
+W + G R G SA S N + N +D+ F +G+I
Sbjct: 345 EAKWDRFPEGSRIFIGTRSASGASKNG--AHIFATGNLSSDKVSKQDVFDLFHRFGRIAQ 402
Query: 181 VRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA-VRDDDDRRNGHSPDRNRDR 239
+ ++ + FVQY E+ RA+D ++ R I +E + +D + SPDRN+ R
Sbjct: 403 ISLKSAYGFVQYHSIEEGQRAMDNLQGIEIKGRRIHLEVSRAQDKSKKDKTRSPDRNKTR 462
Query: 240 SPDRGRR------RSPSPYRRERG-SP---DYGRGSSRSPYRRERGSPDYGRVRSPSPYR 289
D GRR ++ YR RG SP DYGR S Y R+RG D R R+
Sbjct: 463 --DSGRRNERQGHQTRDDYRSSRGHSPHRNDYGRDES---YGRDRGFYDNSRGRA----- 512
Query: 290 RDRGSPDYGRNSSRSPYKK 308
R R SP YGRN + Y++
Sbjct: 513 RSR-SPGYGRNGKDNNYRR 530
>gi|351708666|gb|EHB11585.1| Splicing factor, arginine/serine-rich 5 [Heterocephalus glaber]
Length = 270
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
+F G AR+ D+ER F+ YG++ +D+K GF F+ +D RDA+DA+ LD E
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 153 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTD 212
+F+ +P R +D+ER F+ YG+I + ++R F FV++E DA A+ + +L
Sbjct: 6 VFIGRLNP-AAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 213 RVISVEY 219
+++E+
Sbjct: 65 ERVTIEH 71
>gi|348515955|ref|XP_003445505.1| PREDICTED: serine/arginine-rich splicing factor 4-like isoform 2
[Oreochromis niloticus]
Length = 258
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
+F G AR+ D+E+ F+ YG++ +++K+GF F+ DD RDA+DA+ L+ E
Sbjct: 6 VFIGRLSPHARERDVEKFFKGYGRIREINLKNGFGFVEFDDHRDADDAVYELNGKEL 62
>gi|327281934|ref|XP_003225700.1| PREDICTED: serine/arginine-rich splicing factor 5-like [Anolis
carolinensis]
Length = 266
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
+F G AR+ D+ER F+ YG++ +D+K GF F+ +D RDA+DA+ LD E
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
>gi|307133730|ref|NP_001182521.1| splicing factor, arginine/serine-rich 5 [Pongo abelii]
gi|109084084|ref|XP_001109903.1| PREDICTED: splicing factor, arginine/serine-rich 5 isoform 2
[Macaca mulatta]
gi|297298154|ref|XP_001110094.2| PREDICTED: splicing factor, arginine/serine-rich 5 isoform 3
[Macaca mulatta]
gi|297298156|ref|XP_001110146.2| PREDICTED: splicing factor, arginine/serine-rich 5 isoform 4
[Macaca mulatta]
gi|119601409|gb|EAW81003.1| splicing factor, arginine/serine-rich 5, isoform CRA_b [Homo
sapiens]
Length = 271
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
+F G AR+ D+ER F+ YG++ +D+K GF F+ +D RDA+DA+ LD E
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
>gi|149643059|ref|NP_001092399.1| serine/arginine-rich splicing factor 5 [Bos taurus]
gi|73963391|ref|XP_867135.1| PREDICTED: serine/arginine-rich splicing factor 5 isoform 9 [Canis
lupus familiaris]
gi|301763317|ref|XP_002917076.1| PREDICTED: splicing factor, arginine/serine-rich 5-like [Ailuropoda
melanoleuca]
gi|345803610|ref|XP_867196.2| PREDICTED: serine/arginine-rich splicing factor 5 isoform 15 [Canis
lupus familiaris]
gi|410962543|ref|XP_003987828.1| PREDICTED: serine/arginine-rich splicing factor 5 isoform 1 [Felis
catus]
gi|410962545|ref|XP_003987829.1| PREDICTED: serine/arginine-rich splicing factor 5 isoform 2 [Felis
catus]
gi|410962547|ref|XP_003987830.1| PREDICTED: serine/arginine-rich splicing factor 5 isoform 3 [Felis
catus]
gi|148878097|gb|AAI46186.1| SFRS5 protein [Bos taurus]
gi|281349392|gb|EFB24976.1| hypothetical protein PANDA_005250 [Ailuropoda melanoleuca]
gi|296482956|tpg|DAA25071.1| TPA: splicing factor, arginine/serine-rich 5 [Bos taurus]
gi|440897364|gb|ELR49075.1| Serine/arginine-rich splicing factor 5 [Bos grunniens mutus]
Length = 272
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
+F G AR+ D+ER F+ YG++ +D+K GF F+ +D RDA+DA+ LD E
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
>gi|86991438|ref|NP_001034554.1| serine/arginine-rich splicing factor 5 [Homo sapiens]
gi|86991440|ref|NP_008856.2| serine/arginine-rich splicing factor 5 [Homo sapiens]
gi|296215383|ref|XP_002754098.1| PREDICTED: serine/arginine-rich splicing factor 5 isoform 2
[Callithrix jacchus]
gi|332229001|ref|XP_003263676.1| PREDICTED: serine/arginine-rich splicing factor 5 isoform 1
[Nomascus leucogenys]
gi|332229003|ref|XP_003263677.1| PREDICTED: serine/arginine-rich splicing factor 5 isoform 2
[Nomascus leucogenys]
gi|332842591|ref|XP_510034.2| PREDICTED: serine/arginine-rich splicing factor 5 isoform 6 [Pan
troglodytes]
gi|332842593|ref|XP_001143701.2| PREDICTED: serine/arginine-rich splicing factor 5 isoform 2 [Pan
troglodytes]
gi|390469250|ref|XP_002754097.2| PREDICTED: serine/arginine-rich splicing factor 5 isoform 1
[Callithrix jacchus]
gi|397507326|ref|XP_003824150.1| PREDICTED: serine/arginine-rich splicing factor 5 [Pan paniscus]
gi|403264529|ref|XP_003924530.1| PREDICTED: serine/arginine-rich splicing factor 5 [Saimiri
boliviensis boliviensis]
gi|426377318|ref|XP_004055414.1| PREDICTED: serine/arginine-rich splicing factor 5 isoform 1
[Gorilla gorilla gorilla]
gi|426377320|ref|XP_004055415.1| PREDICTED: serine/arginine-rich splicing factor 5 isoform 2
[Gorilla gorilla gorilla]
gi|3929378|sp|Q13243.1|SRSF5_HUMAN RecName: Full=Serine/arginine-rich splicing factor 5; AltName:
Full=Delayed-early protein HRS; AltName:
Full=Pre-mRNA-splicing factor SRP40; AltName:
Full=Splicing factor, arginine/serine-rich 5
gi|1049080|gb|AAA93070.1| SRp40-1 [Homo sapiens]
gi|17511888|gb|AAH18823.1| Splicing factor, arginine/serine-rich 5 [Homo sapiens]
gi|30583017|gb|AAP35752.1| splicing factor, arginine/serine-rich 5 [Homo sapiens]
gi|61362109|gb|AAX42162.1| splicing factor arginine/serine-rich 5 [synthetic construct]
gi|61362114|gb|AAX42163.1| splicing factor arginine/serine-rich 5 [synthetic construct]
gi|71297198|gb|AAH40209.1| Splicing factor, arginine/serine-rich 5 [Homo sapiens]
gi|90075796|dbj|BAE87578.1| unnamed protein product [Macaca fascicularis]
gi|119601408|gb|EAW81002.1| splicing factor, arginine/serine-rich 5, isoform CRA_a [Homo
sapiens]
gi|119601411|gb|EAW81005.1| splicing factor, arginine/serine-rich 5, isoform CRA_a [Homo
sapiens]
gi|119601412|gb|EAW81006.1| splicing factor, arginine/serine-rich 5, isoform CRA_a [Homo
sapiens]
gi|208967490|dbj|BAG73759.1| splicing factor, arginine/serine-rich 5 [synthetic construct]
gi|355693393|gb|EHH27996.1| hypothetical protein EGK_18328 [Macaca mulatta]
gi|355778697|gb|EHH63733.1| hypothetical protein EGM_16760 [Macaca fascicularis]
gi|380815560|gb|AFE79654.1| serine/arginine-rich splicing factor 5 [Macaca mulatta]
gi|380815562|gb|AFE79655.1| serine/arginine-rich splicing factor 5 [Macaca mulatta]
gi|380815564|gb|AFE79656.1| serine/arginine-rich splicing factor 5 [Macaca mulatta]
gi|383420727|gb|AFH33577.1| serine/arginine-rich splicing factor 5 [Macaca mulatta]
gi|383420729|gb|AFH33578.1| serine/arginine-rich splicing factor 5 [Macaca mulatta]
gi|383420731|gb|AFH33579.1| serine/arginine-rich splicing factor 5 [Macaca mulatta]
gi|410218428|gb|JAA06433.1| serine/arginine-rich splicing factor 5 [Pan troglodytes]
gi|410218430|gb|JAA06434.1| serine/arginine-rich splicing factor 5 [Pan troglodytes]
gi|410252412|gb|JAA14173.1| serine/arginine-rich splicing factor 5 [Pan troglodytes]
gi|410252414|gb|JAA14174.1| serine/arginine-rich splicing factor 5 [Pan troglodytes]
gi|410303912|gb|JAA30556.1| serine/arginine-rich splicing factor 5 [Pan troglodytes]
gi|410303914|gb|JAA30557.1| serine/arginine-rich splicing factor 5 [Pan troglodytes]
gi|410357772|gb|JAA44585.1| serine/arginine-rich splicing factor 5 [Pan troglodytes]
gi|410357774|gb|JAA44586.1| serine/arginine-rich splicing factor 5 [Pan troglodytes]
gi|410358000|gb|JAA44587.1| splicing factor, arginine/serine-rich 5 [Pan troglodytes]
Length = 272
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
+F G AR+ D+ER F+ YG++ +D+K GF F+ +D RDA+DA+ LD E
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
>gi|119226243|ref|NP_001073162.1| serine/arginine-rich splicing factor 5 [Mus musculus]
gi|119226245|ref|NP_033185.2| serine/arginine-rich splicing factor 5 [Mus musculus]
gi|119226247|ref|NP_001073163.1| serine/arginine-rich splicing factor 5 [Mus musculus]
gi|158631248|ref|NP_062130.2| serine/arginine-rich splicing factor 5 [Rattus norvegicus]
gi|306774128|ref|NP_001182434.1| serine/arginine-rich splicing factor 5 [Rattus norvegicus]
gi|306774130|ref|NP_001182435.1| serine/arginine-rich splicing factor 5 [Rattus norvegicus]
gi|354472150|ref|XP_003498303.1| PREDICTED: serine/arginine-rich splicing factor 5-like [Cricetulus
griseus]
gi|1168968|sp|Q09167.1|SRSF5_RAT RecName: Full=Serine/arginine-rich splicing factor 5; AltName:
Full=Delayed-early protein HRS; AltName:
Full=Insulin-induced growth response protein CL-4;
AltName: Full=Pre-mRNA-splicing factor SRP40; AltName:
Full=Splicing factor, arginine/serine-rich 5
gi|410516929|sp|O35326.2|SRSF5_MOUSE RecName: Full=Serine/arginine-rich splicing factor 5; AltName:
Full=Delayed-early protein HRS; AltName:
Full=Pre-mRNA-splicing factor SRP40; AltName:
Full=Splicing factor, arginine/serine-rich 5
gi|349079|gb|AAA62266.1| growth response protein [Rattus norvegicus]
gi|34849628|gb|AAH58479.1| Sfrs5 protein [Rattus norvegicus]
gi|52139013|gb|AAH82593.1| Splicing factor, arginine/serine-rich 5 (SRp40, HRS) [Mus musculus]
gi|74144656|dbj|BAE27313.1| unnamed protein product [Mus musculus]
gi|148670738|gb|EDL02685.1| mCG7614, isoform CRA_a [Mus musculus]
gi|148670740|gb|EDL02687.1| mCG7614, isoform CRA_a [Mus musculus]
gi|148670743|gb|EDL02690.1| mCG7614, isoform CRA_a [Mus musculus]
gi|148670745|gb|EDL02692.1| mCG7614, isoform CRA_a [Mus musculus]
gi|148670746|gb|EDL02693.1| mCG7614, isoform CRA_a [Mus musculus]
gi|149025034|gb|EDL81401.1| splicing factor, arginine/serine-rich 5, isoform CRA_b [Rattus
norvegicus]
gi|149025037|gb|EDL81404.1| splicing factor, arginine/serine-rich 5, isoform CRA_b [Rattus
norvegicus]
gi|344235744|gb|EGV91847.1| Splicing factor, arginine/serine-rich 5 [Cricetulus griseus]
Length = 269
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
+F G AR+ D+ER F+ YG++ +D+K GF F+ +D RDA+DA+ LD E
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 153 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTD 212
+F+ +P R +D+ER F+ YG+I + ++R F FV++E DA A+ + +L
Sbjct: 6 VFIGRLNP-AAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 213 RVISVEY 219
+++E+
Sbjct: 65 ERVTIEH 71
>gi|335292735|ref|XP_001927454.2| PREDICTED: serine/arginine-rich splicing factor 5 isoform 1 [Sus
scrofa]
gi|335292737|ref|XP_001927469.2| PREDICTED: serine/arginine-rich splicing factor 5 isoform 2 [Sus
scrofa]
Length = 272
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
+F G AR+ D+ER F+ YG++ +D+K GF F+ +D RDA+DA+ LD E
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
>gi|189203851|ref|XP_001938261.1| nuclear localization sequence-binding protein [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187985360|gb|EDU50848.1| nuclear localization sequence-binding protein [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 475
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 90/192 (46%), Gaps = 16/192 (8%)
Query: 49 AFEAMMRPIFCGNFEYDARQSDLERLFRRYGKV--DRV--DMKSGFA--FIYMDDERDAE 102
A E ++ +F GN ++ + L R F +G++ RV D ++G A F Y++ A+
Sbjct: 215 AAEEGVKNLFVGNMSWNIDEDWLRREFEGFGEIVGCRVITDRETGRAKGFGYVEFANAAD 274
Query: 103 DAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYH 162
A + E+ GR+L V+++ GG + + + PS TLF+ N +
Sbjct: 275 AAKAQKEMHEYELDGRQLNVDFSTPRAKPDANGGARANKYGDKRSPPSNTLFLGNVS-FE 333
Query: 163 TRTRDLERHFEPYGKIISVRI--------RRNFAFVQYEVQEDATRALDATNMSKLTDRV 214
++ F YG I V + + F +V + Q++AT AL+A N + R
Sbjct: 334 CSNESIQEVFAEYGSITRVSLPTDRDTGALKGFGYVDFSSQQEATAALEALNGQDIGGRA 393
Query: 215 ISVEYAV-RDDD 225
I ++YA R+D+
Sbjct: 394 IRIDYATPREDN 405
>gi|12841460|dbj|BAB25217.1| unnamed protein product [Mus musculus]
gi|148670741|gb|EDL02688.1| mCG7614, isoform CRA_c [Mus musculus]
gi|148670742|gb|EDL02689.1| mCG7614, isoform CRA_c [Mus musculus]
gi|148670747|gb|EDL02694.1| mCG7614, isoform CRA_c [Mus musculus]
Length = 270
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
+F G AR+ D+ER F+ YG++ +D+K GF F+ +D RDA+DA+ LD E
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
>gi|213401865|ref|XP_002171705.1| pre-mRNA-splicing factor srp2 [Schizosaccharomyces japonicus
yFS275]
gi|211999752|gb|EEB05412.1| pre-mRNA-splicing factor srp2 [Schizosaccharomyces japonicus
yFS275]
Length = 375
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 13/166 (7%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
+F G A + D+E F+ YG++ + +GF F+ +++ RDA D + D EF
Sbjct: 6 LFIGRLPSQAAREDVEDFFKGYGRILDCKLMNGFGFLELENPRDARDIVN--DGKEF--M 61
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKT---LFVINF--DPYHTRTRDLERH 171
G R+ VE + ER R +A+ P RP +T L V N D +D+ R
Sbjct: 62 GERIIVEPARGERRRRDTFRDGAAKYP----RPRRTGYRLIVENLAEDVSWQDLKDVMRK 117
Query: 172 FEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
+ R +R V++ ++D ALD N + + IS+
Sbjct: 118 AGEPTFTDAHREQRGTGVVEFSTEDDMKHALDTLNGETIKGQAISL 163
>gi|388515137|gb|AFK45630.1| unknown [Medicago truncatula]
Length = 259
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 83/192 (43%), Gaps = 34/192 (17%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R ++ GN D R ++E LF +YG + +D+K G+AF+ +D RDA+DAI D
Sbjct: 7 RTLYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIYYRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERG-------IRRPGGGSSARRPSTNTRPSKTLFVINFDPYH 162
+F G RL VE RG R G S +R S R S ++ P
Sbjct: 67 GYDF--DGYRLLVELAHGGRGSSSSVDRYSRHSGRSGSRGVS---RRSDYRVLVTGLPPS 121
Query: 163 TRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 222
+DL+ H G + ++ R + T +D TN V+YA+R
Sbjct: 122 ASWQDLKDHMRKAGHVCFSQVFRE--------RGGLTGIVDYTNYDD-------VKYAIR 166
Query: 223 --DDDDRRNGHS 232
DD + RN S
Sbjct: 167 KLDDSEFRNAFS 178
>gi|395504171|ref|XP_003756430.1| PREDICTED: serine/arginine-rich splicing factor 5 [Sarcophilus
harrisii]
Length = 266
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
+F G AR+ D+ER F+ YG++ +D+K GF F+ +D RDA+DA+ LD E
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
>gi|358339074|dbj|GAA47201.1| RNA-binding protein 4.1 [Clonorchis sinensis]
Length = 328
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN + + +DL + F YGKV D+ + + F++M+ + DAE A+ GL +
Sbjct: 1 MVKLFVGNLNPETKAADLRKKFEAYGKVTECDVVNNYGFVHMEKDSDAEAALAGLQDSIL 60
Query: 114 GRKGRRLRVEWTKHERG 130
G ++ VE + +RG
Sbjct: 61 --DGVKINVERSHGKRG 75
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 153 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTD 212
LFV N +P T+ DL + FE YGK+ + N+ FV E DA AL S L
Sbjct: 4 LFVGNLNP-ETKAADLRKKFEAYGKVTECDVVNNYGFVHMEKDSDAEAALAGLQDSILDG 62
Query: 213 RVISVE 218
I+VE
Sbjct: 63 VKINVE 68
>gi|126282694|ref|XP_001370225.1| PREDICTED: serine/arginine-rich splicing factor 5-like [Monodelphis
domestica]
Length = 265
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
+F G AR+ D+ER F+ YG++ +D+K GF F+ +D RDA+DA+ LD E
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
>gi|348573304|ref|XP_003472431.1| PREDICTED: serine/arginine-rich splicing factor 5-like [Cavia
porcellus]
Length = 273
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
+F G AR+ D+ER F+ YG++ +D+K GF F+ +D RDA+DA+ LD E
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 153 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTD 212
+F+ +P R +D+ER F+ YG+I + ++R F FV++E DA A+ + +L
Sbjct: 6 VFIGRLNP-AAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 213 RVISVEY 219
+++E+
Sbjct: 65 ERVTIEH 71
>gi|291410875|ref|XP_002721708.1| PREDICTED: splicing factor, arginine/serine-rich 5 [Oryctolagus
cuniculus]
Length = 275
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
+F G AR+ D+ER F+ YG++ +D+K GF F+ +D RDA+DA+ LD E
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
>gi|449547299|gb|EMD38267.1| hypothetical protein CERSUDRAFT_113433 [Ceriporiopsis subvermispora
B]
Length = 679
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 75/176 (42%), Gaps = 32/176 (18%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDAIRGL 108
++ G + ++ L +F G V D V +S G+A++ + D E A+ L
Sbjct: 50 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 109
Query: 109 DRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDL 168
+ + KGR R+ W++ + +R+ G G+ +F+ N D + L
Sbjct: 110 NYSLI--KGRACRIMWSQRDPALRKTGQGN--------------IFIKNLDE-GIDNKAL 152
Query: 169 ERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
F +G ++S ++ + + FV YE E A A+ A N L D+ + V
Sbjct: 153 HDTFAAFGNVLSCKVATDEHGRSKGYGFVHYETAEAADTAIKAVNGMLLNDKKVYV 208
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 92/218 (42%), Gaps = 23/218 (10%)
Query: 40 RSHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAF 92
R Q I +A ++ N + + + +LF ++G V ++ GF F
Sbjct: 214 RKERQSKIEEMKAQFTNVYVKNIDAEVTDEEFRQLFEQFGNVTSAVIQRDEEGRSKGFGF 273
Query: 93 IYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSK- 151
+ + +A+ + L +F G++L V T+ ++ R + + N + SK
Sbjct: 274 VNFEKHEEAQKGVESLH--DFELNGKKLFV--TRAQKKAEREEELRKSYEQAKNEKLSKY 329
Query: 152 ---TLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN-------FAFVQYEVQEDATRA 201
L++ N + R L + FEP+G I S ++ R+ F FV + ++AT+A
Sbjct: 330 QGVNLYIKNLEDEVDDER-LRQEFEPFGTITSAKVMRDEKGSSKGFGFVCFSSPDEATKA 388
Query: 202 LDATNMSKLTDRVISVEYAVRDDDDRRNGHSPDRNRDR 239
+ N + + + V A R + R+ S R++
Sbjct: 389 VAEMNNKMIGTKPLYVSLAQRREVRRQQLESQIAQRNQ 426
>gi|30583835|gb|AAP36166.1| Homo sapiens splicing factor, arginine/serine-rich 5 [synthetic
construct]
gi|60653861|gb|AAX29623.1| splicing factor arginine/serine-rich 5 [synthetic construct]
Length = 273
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
+F G AR+ D+ER F+ YG++ +D+K GF F+ +D RDA+DA+ LD E
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
>gi|402876562|ref|XP_003902030.1| PREDICTED: serine/arginine-rich splicing factor 5 [Papio anubis]
Length = 272
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
+F G AR+ D+ER F+ YG++ +D+K GF F+ +D RDA+DA+ LD E
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
>gi|432107111|gb|ELK32534.1| Serine/arginine-rich splicing factor 5 [Myotis davidii]
Length = 280
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
+F G AR+ D+ER F+ YG++ +D+K GF F+ +D RDA+DA+ LD E
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
>gi|395845812|ref|XP_003795615.1| PREDICTED: serine/arginine-rich splicing factor 1 [Otolemur
garnettii]
Length = 312
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ G D
Sbjct: 82 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 141
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN-----TRPSKTLFVINFDPYHTRTR 166
++ G RLRVE+ + RG R GGG +R S+ V++ P +
Sbjct: 142 DY--DGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 199
Query: 167 DLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
DL+ H G + + R+ V++ +ED T A+ + +K
Sbjct: 200 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 244
>gi|255558828|ref|XP_002520437.1| FUS-interacting serine-arginine-rich protein 1, putative [Ricinus
communis]
gi|223540279|gb|EEF41850.1| FUS-interacting serine-arginine-rich protein 1, putative [Ricinus
communis]
Length = 399
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 56/128 (43%), Gaps = 25/128 (19%)
Query: 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI--------RRNFAFVQYEVQEDATR 200
P L+V P T+ RDLE+HF GK+I V + R F FV +A R
Sbjct: 45 PGNNLYVTGLSPRITK-RDLEKHFASEGKVIDVHLVVDPWTRESRGFGFVTMSTLVEADR 103
Query: 201 ALDATNMSKLTDRVISVEYAVRDDDDRRNGHSPD----------RNRDRSPDRGRRRSPS 250
+ N S L RVI+VE A RR G +P R R +P RSPS
Sbjct: 104 CIKYLNRSVLEGRVITVEKA-----KRRRGRTPTPGRYLGLRTIRVRRLTPSHSPHRSPS 158
Query: 251 PYRRERGS 258
Y R RGS
Sbjct: 159 -YSRYRGS 165
>gi|449456443|ref|XP_004145959.1| PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-splicing factor SF2-like
[Cucumis sativus]
Length = 248
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 70/169 (41%), Gaps = 23/169 (13%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D ++ ++E LF +YG++ +++K + F+ + RDAEDAIR D
Sbjct: 7 RTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAEDAIRARD 66
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPS----TNTRPSKTLFVINFDPYHTRT 165
F G RLRVE R G SS RR S L + D +
Sbjct: 67 GYNF--DGCRLRVELAHGGR-----GPSSSDRRSSYGGGGGGGGQGFLLLDYVDMMNLLE 119
Query: 166 RDLERHFEPYGKIISVRIRRN----FAFVQYEVQED---ATRALDATNM 207
+ H G + + R+ F V Y +D A R LD T
Sbjct: 120 XCFQDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEF 168
>gi|389748929|gb|EIM90106.1| polyadenylate binding protein [Stereum hirsutum FP-91666 SS1]
Length = 682
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 91/226 (40%), Gaps = 20/226 (8%)
Query: 31 RRLYV-LGFRRSHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS- 88
+++YV R Q + A ++ N + + Q LF ++G V +++
Sbjct: 210 KKVYVGYHISRKERQSKLEEMRAHFTNLYVKNLDLEVTQDQFVELFSQFGAVTSAVIQTD 269
Query: 89 ------GFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV--EWTKHERGIRRPGGGSSA 140
GF F+ ++ A A+ L T+F G++L V K ER SA
Sbjct: 270 EEGKSKGFGFVNFENHEQAAKAVDTLHDTDF--NGKKLFVSRAQKKAEREEELRKSYESA 327
Query: 141 RRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN-------FAFVQYE 193
+ + L++ N + L FEP+G I S ++ R+ F FV +
Sbjct: 328 KMEKLSKYQGVNLYIKNLED-DVDDEKLRAEFEPFGTITSCKVMRDDKGTSKGFGFVCFS 386
Query: 194 VQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSPDRNRDR 239
++AT+A+ N + + + V A R + R+ S R++
Sbjct: 387 SPDEATKAVAEMNNKMIGSKPLYVSLAQRREVRRQQLESQIAQRNQ 432
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 78/189 (41%), Gaps = 40/189 (21%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDAIRGL 108
++ G + ++ L +F G V D V +S G+A++ + D E A+ L
Sbjct: 46 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNVTDGERALEQL 105
Query: 109 DRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPY---HTRT 165
+ + KGR R+ W++ + +R+ G G+ +F+ N D RT
Sbjct: 106 NYSLI--KGRACRIMWSQRDPALRKTGQGN--------------IFIKNLDELIDNKVRT 149
Query: 166 RD------LERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTD 212
L F +G ++S ++ R + +V YE E A A+ A N L D
Sbjct: 150 AQKTPPHALHDTFAAFGNVLSCKVATDEQGRSRGYGYVHYETAEAAESAIKAVNGMLLND 209
Query: 213 RVISVEYAV 221
+ + V Y +
Sbjct: 210 KKVYVGYHI 218
>gi|395849594|ref|XP_003797407.1| PREDICTED: serine/arginine-rich splicing factor 5 isoform 1
[Otolemur garnettii]
gi|395849596|ref|XP_003797408.1| PREDICTED: serine/arginine-rich splicing factor 5 isoform 2
[Otolemur garnettii]
Length = 270
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
+F G AR+ D+ER F+ YG++ +D+K GF F+ +D RDA+DA+ LD E
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
>gi|449502441|ref|XP_002200515.2| PREDICTED: serine/arginine-rich splicing factor 4-like [Taeniopygia
guttata]
Length = 277
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
+F G+ AR+ D+E+ F+ YG++ + +K+GF F+ +D RDA+DAI L+ E
Sbjct: 6 VFVGHLSSRARERDVEKFFKGYGRIREIHLKNGFGFVEFEDHRDADDAIYELNGKEL 62
>gi|449502419|ref|XP_004174507.1| PREDICTED: serine/arginine-rich splicing factor 5 isoform 2
[Taeniopygia guttata]
Length = 265
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
+F G AR+ D+ER F+ YG++ +D+K GF F+ +D RDA+DA+ LD E
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 153 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTD 212
+F+ +P R +D+ER F+ YG+I + ++R F FV++E DA A+ + +L
Sbjct: 6 VFIGRLNP-AAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 213 RVISVEY 219
+++E+
Sbjct: 65 ERVTIEH 71
>gi|224051266|ref|XP_002200500.1| PREDICTED: serine/arginine-rich splicing factor 5 isoform 1
[Taeniopygia guttata]
Length = 264
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
+F G AR+ D+ER F+ YG++ +D+K GF F+ +D RDA+DA+ LD E
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 153 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTD 212
+F+ +P R +D+ER F+ YG+I + ++R F FV++E DA A+ + +L
Sbjct: 6 VFIGRLNP-AAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 213 RVISVEY 219
+++E+
Sbjct: 65 ERVTIEH 71
>gi|417409273|gb|JAA51151.1| Putative splicing factor arginine/serine-rich 1-like protein,
partial [Desmodus rotundus]
Length = 278
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ G D
Sbjct: 48 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 107
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN-----TRPSKTLFVINFDPYHTRTR 166
++ G RLRVE+ + RG R GGG +R S+ V++ P +
Sbjct: 108 DY--DGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 165
Query: 167 DLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
DL+ H G + + R+ V++ +ED T A+ + +K
Sbjct: 166 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 210
>gi|325189186|emb|CCA23709.1| splicing factor putative [Albugo laibachii Nc14]
Length = 233
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 81/185 (43%), Gaps = 19/185 (10%)
Query: 41 SHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYM 95
SH LSI + M + IF GN + + +LE+ F +GK+ V +K FAFI
Sbjct: 12 SHPSLSIHSIPTMPK-IFVGNLPQEISEPELEKTFGEFGKIVNVILKFPRRPPPFAFIEY 70
Query: 96 DDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFV 155
+D RDAEDA++ + E G +RVE +++ G ++R R T F
Sbjct: 71 EDLRDAEDAVQQMHGKEL--HGAEIRVEISRN--------GPKASRDEKFGGRHHGTQFR 120
Query: 156 INFD--PYHTRTRDLERHFEPYGKIISVRI-RRNFAFVQYEVQEDATRALDATNMSKLTD 212
+ P +DL+ G ++ + RR + Q++ RA+ +KL
Sbjct: 121 VELSNIPRSVSWQDLKDFLRIGGVVVHADVDRRGNGVASFTNQQEMERAIRKLKDAKLNG 180
Query: 213 RVISV 217
I +
Sbjct: 181 ERIKI 185
>gi|334327169|ref|XP_003340840.1| PREDICTED: LOW QUALITY PROTEIN: serine/arginine-rich splicing
factor 9-like [Monodelphis domestica]
Length = 220
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 14/160 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMK-----SGFAFIYMDDERDAEDAIRGLDRT 111
I+ N D R+ DLE LF +YG++ +++K + FAF+ +D RDAEDAI G +
Sbjct: 18 IYVENLPADVREKDLEDLFYKYGRIRDIELKNRRGLAPFAFVRFEDPRDAEDAIYGRNGY 77
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERH 171
++G+ RLRVE ++ GG R +R S+ +++ P +DL+ H
Sbjct: 78 DYGQC--RLRVELPRNPG------GGGPRGRTGPPSRRSEFRVLVSGLPPSGSWQDLKDH 129
Query: 172 FEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
G + ++++ V++ +ED AL + SK
Sbjct: 130 MREAGGVCYADVQKDGMGVVEFLRKEDMEYALRRLDDSKF 169
>gi|148669916|gb|EDL01863.1| splicing factor, arginine/serine-rich 1 (ASF/SF2), isoform CRA_a
[Mus musculus]
gi|149053806|gb|EDM05623.1| rCG34610, isoform CRA_b [Rattus norvegicus]
Length = 168
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 7/73 (9%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 112 EFGRKGRRLRVEW 124
++ G RLRVE+
Sbjct: 78 DY--DGYRLRVEF 88
>gi|348515953|ref|XP_003445504.1| PREDICTED: serine/arginine-rich splicing factor 4-like isoform 1
[Oreochromis niloticus]
Length = 295
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
+F G AR+ D+E+ F+ YG++ +++K+GF F+ DD RDA+DA+ L+ E
Sbjct: 6 VFIGRLSPHARERDVEKFFKGYGRIREINLKNGFGFVEFDDHRDADDAVYELNGKEL 62
>gi|212723432|ref|NP_001132009.1| uncharacterized protein LOC100193414 [Zea mays]
gi|194693184|gb|ACF80676.1| unknown [Zea mays]
gi|413942172|gb|AFW74821.1| hypothetical protein ZEAMMB73_961242 [Zea mays]
gi|448878186|gb|AGE46056.1| arginine/serine-rich splicing factor RS2Z35 transcript I [Zea mays]
Length = 314
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G R DLE LF +YG++ V++K +AFI D RDA+DA LD E
Sbjct: 13 LYVGRLAPRTRSRDLEYLFSKYGRIREVELKRDYAFIEFSDPRDADDAQYNLDGREV--D 70
Query: 117 GRRLRVEWTKHERGIRRPGGGS 138
G R+ VE+ K G+ R GGS
Sbjct: 71 GSRIIVEFAK---GVPRGSGGS 89
Score = 44.7 bits (104), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 153 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTD 212
L+V P TR+RDLE F YG+I V ++R++AF+++ DA A + ++
Sbjct: 13 LYVGRLAP-RTRSRDLEYLFSKYGRIREVELKRDYAFIEFSDPRDADDAQYNLDGREVDG 71
Query: 213 RVISVEYA 220
I VE+A
Sbjct: 72 SRIIVEFA 79
>gi|160333128|ref|NP_001026368.2| splicing factor, arginine/serine-rich 5 [Gallus gallus]
Length = 264
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
+F G AR+ D+ER F+ YG++ +D+K GF F+ +D RDA+DA+ LD E
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
>gi|26383576|dbj|BAC25546.1| unnamed protein product [Mus musculus]
Length = 248
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 7/73 (9%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 112 EFGRKGRRLRVEW 124
++ G RLRVE+
Sbjct: 78 DY--DGYRLRVEF 88
>gi|255568494|ref|XP_002525221.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
gi|223535518|gb|EEF37187.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
Length = 305
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G+ R DLE LF +YG+V VDMK +AF+ D RDA+DA LD +
Sbjct: 13 LYVGHLASRTRSRDLEYLFSKYGRVRDVDMKRDYAFVEFSDPRDADDARYHLDGKDL--D 70
Query: 117 GRRLRVEWTK 126
G R+ VE+ K
Sbjct: 71 GSRIIVEFAK 80
Score = 44.7 bits (104), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%)
Query: 143 PSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRAL 202
P R + T + TR+RDLE F YG++ V ++R++AFV++ DA A
Sbjct: 2 PRYEDRYANTRLYVGHLASRTRSRDLEYLFSKYGRVRDVDMKRDYAFVEFSDPRDADDAR 61
Query: 203 DATNMSKLTDRVISVEYA 220
+ L I VE+A
Sbjct: 62 YHLDGKDLDGSRIIVEFA 79
>gi|410915734|ref|XP_003971342.1| PREDICTED: serine/arginine-rich splicing factor 1-like [Takifugu
rubripes]
Length = 238
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 8/160 (5%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E LF ++G + +D+K+ FAF+ +D RD+ DA+ +R
Sbjct: 17 IYVGNLPPDIRSKDIEDLFYKFGAIRDIDLKNRRGGPPFAFVEFEDPRDSGDAV--YERD 74
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERH 171
+ G RLRVE+ + RG G G R +R S V++ P +DL+ H
Sbjct: 75 GYDYDGYRLRVEFPRGGRGGGGRGMGPPRTRYGPPSRRSDYRVVVSGLPQSGSWQDLKDH 134
Query: 172 FEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
G + + R+ V++ +ED T A+ + +K
Sbjct: 135 MREAGDVCYTDVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 174
>gi|255936927|ref|XP_002559490.1| Pc13g10700 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211584110|emb|CAP92139.1| Pc13g10700 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 301
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 13/177 (7%)
Query: 57 IFCGNFEYDARQSDLERLFRRYG--KVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFG 114
++ GN + +SD+E F +G K+ + + +GF FI DD+ DA D + D +EF
Sbjct: 9 LYLGNLPRNVTKSDIEEHFSSHGSGKITEIKLMNGFGFIEYDDQLDARDIV--PDGSEF- 65
Query: 115 RKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPY-HTRTRDLERHFE 173
KG RL V++ RG RR + RP +T+F + T +DL+
Sbjct: 66 -KGERLTVQFA---RGPRRKEAFPGPSERNALPRPRRTIFRMQISGLPETSWQDLKDFAR 121
Query: 174 PYG-KIISVRIRRNF--AFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDR 227
G ++ R FV++E D A++ + + V+S ++ ++R
Sbjct: 122 QSGLDVVYSETGREQGRGFVEFETANDLKTAVEKLDQREFKGSVVSCVADIQSFEER 178
>gi|299469752|emb|CBN76606.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 330
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGL 108
M I+ GN D + D++ +F ++G++ +D+K+ F FI D RDAE+A+R
Sbjct: 1 MARIYIGNLPMDVTEKDMDDVFYKFGRIVDIDLKTPARPPAFGFITFQDARDAEEAVRA- 59
Query: 109 DRTEFGRKGRRLRVEWTKHER 129
R + G RLRVE ++ R
Sbjct: 60 -RDGYDMDGSRLRVEISRGRR 79
>gi|348687956|gb|EGZ27770.1| hypothetical protein PHYSODRAFT_246920 [Phytophthora sojae]
Length = 838
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 54/99 (54%), Gaps = 14/99 (14%)
Query: 36 LGFRRSHSQLSIAA------FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS- 88
L S S L IAA F + R ++ GN D R ++E +F +YG++ +D+K
Sbjct: 507 LAIFGSTSCLLIAAAPAAKYFMSGTR-VYVGNLPMDIRTREVEDIFYKYGRIRDIDVKFP 565
Query: 89 ----GFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 123
FAF+ +D RDAEDAIRG D ++ G RLRVE
Sbjct: 566 SRPPAFAFVDFEDPRDAEDAIRGRDGYDY--DGARLRVE 602
>gi|119614896|gb|EAW94490.1| splicing factor, arginine/serine-rich 1 (splicing factor 2,
alternate splicing factor), isoform CRA_e [Homo sapiens]
Length = 142
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 7/73 (9%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 112 EFGRKGRRLRVEW 124
++ G RLRVE+
Sbjct: 78 DY--DGYRLRVEF 88
>gi|217073712|gb|ACJ85216.1| unknown [Medicago truncatula]
Length = 246
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 83/192 (43%), Gaps = 34/192 (17%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R ++ GN D R ++E LF +YG + +D+K G+AF+ +D RDA+DAI D
Sbjct: 7 RTLYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIYYRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERG-------IRRPGGGSSARRPSTNTRPSKTLFVINFDPYH 162
+F G RL VE RG R G S +R S R S ++ P
Sbjct: 67 GYDF--DGYRLLVELAHGGRGSSSSVDRYSRHSGRSGSRGVS---RRSDYRVLVTGLPPS 121
Query: 163 TRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 222
+DL+ H G + ++ R + T +D TN V+YA+R
Sbjct: 122 ASWQDLKDHMRKAGHVCFSQVFRE--------RGGLTGIVDYTNYDD-------VKYAIR 166
Query: 223 --DDDDRRNGHS 232
DD + RN S
Sbjct: 167 KLDDSEFRNAFS 178
>gi|384251873|gb|EIE25350.1| polyadenylate binding protein [Coccomyxa subellipsoidea C-169]
Length = 681
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 76/209 (36%), Gaps = 15/209 (7%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKSGFAFIYMDDERDAEDAIRGLD 109
+F N + ++E++F +G V D GF FI +D A A+ L+
Sbjct: 215 VFVKNLSENLTDEEVEKMFNEHGMVTSFAIMKDEAGKSKGFGFINFEDAEGAHAAVTALN 274
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLE 169
E K K ER R+ L+V N L
Sbjct: 275 GKEIDGKELYCGRAQKKAEREAELKQKFDEVRQERIAKYQGMNLYVKNLVD-EVDDDQLR 333
Query: 170 RHFEPYGKIISVRIRRN-------FAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 222
F P+G I S ++ ++ F FV Y E+ATRA+ N L + + V A R
Sbjct: 334 AEFAPHGTITSAKVMKDSAGKSKGFGFVCYSSPEEATRAVTEMNGKMLLGKPMYVALAQR 393
Query: 223 DDDDRRNGHSPDRNRDRSPDRGRRRSPSP 251
+ R+ + +P GR +P P
Sbjct: 394 REVRRQQLEQQYTQQRVAPMSGRPNAPGP 422
>gi|357441751|ref|XP_003591153.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
gi|355480201|gb|AES61404.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
Length = 290
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 83/192 (43%), Gaps = 34/192 (17%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R ++ GN D R ++E LF +YG + +D+K G+AF+ +D RDA+DAI D
Sbjct: 38 RTLYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIYYRD 97
Query: 110 RTEFGRKGRRLRVEWTKHERG-------IRRPGGGSSARRPSTNTRPSKTLFVINFDPYH 162
+F G RL VE RG R G S +R S R S ++ P
Sbjct: 98 GYDF--DGYRLLVELAHGGRGSSSSVDRYSRHSGRSGSRGVS---RRSDYRVLVTGLPPS 152
Query: 163 TRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 222
+DL+ H G + ++ R + T +D TN V+YA+R
Sbjct: 153 ASWQDLKDHMRKAGHVCFSQVFRE--------RGGLTGIVDYTNYDD-------VKYAIR 197
Query: 223 --DDDDRRNGHS 232
DD + RN S
Sbjct: 198 KLDDSEFRNAFS 209
>gi|334322457|ref|XP_003340247.1| PREDICTED: serine/arginine-rich splicing factor 1-like [Monodelphis
domestica]
gi|395531888|ref|XP_003768005.1| PREDICTED: serine/arginine-rich splicing factor 1 [Sarcophilus
harrisii]
Length = 249
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 14/166 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN------TRPSKTLFVINFDPYHTRT 165
++ G RLRVE+ + RG R GGG + +R S+ V++ P
Sbjct: 78 DY--DGYRLRVEFPRSGRGTGRGGGGGGGGGGAPRGRYGPPSRRSEYRVVVSGLPPSGSW 135
Query: 166 RDLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
+DL+ H G + + R+ V++ +ED T A+ + +K
Sbjct: 136 QDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 181
>gi|310772202|ref|NP_001006476.2| serine/arginine-rich splicing factor 5a [Gallus gallus]
gi|326920574|ref|XP_003206544.1| PREDICTED: serine/arginine-rich splicing factor 4-like [Meleagris
gallopavo]
Length = 278
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
+F G+ AR+ D+E+ F+ YG++ + +K+GF F+ +D RDA+DAI L+ E
Sbjct: 6 VFVGHLSSRARERDVEKFFKGYGRIREIHLKNGFGFVEFEDHRDADDAIYELNGKEL 62
>gi|410910210|ref|XP_003968583.1| PREDICTED: serine/arginine-rich splicing factor 1-like [Takifugu
rubripes]
gi|47227796|emb|CAG08959.1| unnamed protein product [Tetraodon nigroviridis]
Length = 245
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 81/163 (49%), Gaps = 11/163 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAFI +D RDA+DA+ G D
Sbjct: 16 IYVGNLPPDIRTKDVEDVFYKYGTIRDIDLKNRRGGPPFAFIEFEDPRDADDAVYGRDGY 75
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSAR---RPSTNTRPSKTLFVINFDPYHTRTRDL 168
++ G RLRVE+ + RG R GG R +R S+ +++ P +DL
Sbjct: 76 DY--DGYRLRVEFPRSGRGSRGGFGGIGGAPRGRYGPPSRRSEYRVLVSGLPQSGSWQDL 133
Query: 169 ERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
+ H G + + R+ V++ +ED T A+ + +K
Sbjct: 134 KDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 176
>gi|159484865|ref|XP_001700473.1| SR protein factor [Chlamydomonas reinhardtii]
gi|158272360|gb|EDO98162.1| SR protein factor [Chlamydomonas reinhardtii]
Length = 224
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 7/72 (9%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDAEDAIRGLDR 110
M ++ GN R+ DLE F R+G++ + + GFAFI MDD RDAEDA+R LD
Sbjct: 1 MARVYVGNLPSGIREEDLETEFVRFGRLRNIWVARKPPGFAFIEMDDLRDAEDAVRALD- 59
Query: 111 TEFGRKGRRLRV 122
G KG R+ +
Sbjct: 60 ---GMKGWRVEI 68
>gi|82233969|sp|Q5ZML3.3|SRSF1_CHICK RecName: Full=Serine/arginine-rich splicing factor 1; AltName:
Full=Splicing factor, arginine/serine-rich 1
gi|53127294|emb|CAG31030.1| hypothetical protein RCJMB04_1l5 [Gallus gallus]
Length = 257
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 7/73 (9%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 112 EFGRKGRRLRVEW 124
++ G RLRVE+
Sbjct: 78 DY--DGYRLRVEF 88
>gi|224035793|gb|ACN36972.1| unknown [Zea mays]
gi|413950156|gb|AFW82805.1| splicing factor, arginine/serine-rich 6 [Zea mays]
gi|448878164|gb|AGE46045.1| arginine/serine-rich splicing factor RS2Z39 transcript III [Zea
mays]
gi|448878166|gb|AGE46046.1| arginine/serine-rich splicing factor RS2Z39 transcript IV [Zea
mays]
Length = 353
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G R DLE LF RYG++ V++K +AFI D RDA++A LD +
Sbjct: 13 LYVGRLATRTRSRDLEHLFGRYGRIREVELKRDYAFIEFSDHRDADEARYQLDGRDV--D 70
Query: 117 GRRLRVEWTKHERGIRRPGGGS 138
G R+ VE+ K G+ R GGS
Sbjct: 71 GSRIVVEFAK---GVPRGSGGS 89
Score = 44.7 bits (104), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%)
Query: 152 TLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLT 211
T + TR+RDLE F YG+I V ++R++AF+++ DA A + +
Sbjct: 11 TRLYVGRLATRTRSRDLEHLFGRYGRIREVELKRDYAFIEFSDHRDADEARYQLDGRDVD 70
Query: 212 DRVISVEYA 220
I VE+A
Sbjct: 71 GSRIVVEFA 79
>gi|339239261|ref|XP_003381185.1| 26S protease regulatory subunit 4 [Trichinella spiralis]
gi|316975801|gb|EFV59199.1| 26S protease regulatory subunit 4 [Trichinella spiralis]
Length = 646
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G D R++DLE F+ YG++ + +K+G+ F+ D+ RDA+DA+ L+
Sbjct: 6 VYVGQLTSDIRENDLENFFKGYGRIREITLKNGYGFVEFDERRDADDAVHDLNGKPL--L 63
Query: 117 GRRLRVEWT 125
G ++RVE
Sbjct: 64 GEKIRVEMA 72
>gi|119601416|gb|EAW81010.1| splicing factor, arginine/serine-rich 5, isoform CRA_e [Homo
sapiens]
Length = 209
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
+F G AR+ D+ER F+ YG++ +D+K GF F+ +D RDA+DA+ LD E
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 3/104 (2%)
Query: 153 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTD 212
+F+ +P R +D+ER F+ YG+I + ++R F FV++E DA A+ + +L
Sbjct: 6 VFIGRLNP-AAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 213 RVISVEYAVRDDDDRRNGHS-PDRNRDRSPDRGRRRSPSPYRRE 255
+++E+A R DR R P RR +P P R E
Sbjct: 65 ERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAP-PVRTE 107
>gi|356524435|ref|XP_003530834.1| PREDICTED: uncharacterized protein LOC100805126 [Glycine max]
Length = 362
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 53/112 (47%), Gaps = 16/112 (14%)
Query: 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI--------RRNFAFVQYEVQEDATR 200
P L+V P T+ R+LE+HF GK+I V + R F FV E E+A R
Sbjct: 46 PGNNLYVTGLSPRITK-RELEKHFSAEGKVIDVHLVVDPWTRESRGFGFVTMETLEEADR 104
Query: 201 ALDATNMSKLTDRVISVEYAVRDDDDRRNGHSPD--RNRDRSPDRGRRRSPS 250
+ N S L RVI+VE A RR G +P + R +RRSPS
Sbjct: 105 CVKYLNRSVLEGRVITVEKA-----KRRRGRTPTPGKYLGLRTIRAQRRSPS 151
>gi|328714675|ref|XP_003245425.1| PREDICTED: serine-arginine protein 55-like isoform 2 [Acyrthosiphon
pisum]
Length = 309
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
I+ G+ Y R+ D+++ F+ +G++ + +K+G+ FI DD RDA+DA+ L+ E
Sbjct: 7 IYIGHLPYGVRERDVKKFFKGFGRIKEILLKNGYGFIEFDDYRDADDAVYELNGREL--N 64
Query: 117 GRRLRVE 123
G R+ VE
Sbjct: 65 GERVSVE 71
Score = 41.2 bits (95), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%)
Query: 156 INFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
I PY R RD+++ F+ +G+I + ++ + F++++ DA A+ N +L +
Sbjct: 9 IGHLPYGVRERDVKKFFKGFGRIKEILLKNGYGFIEFDDYRDADDAVYELNGRELNGERV 68
Query: 216 SVEYA 220
SVE A
Sbjct: 69 SVERA 73
>gi|158260889|dbj|BAF82622.1| unnamed protein product [Homo sapiens]
Length = 248
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 78/165 (47%), Gaps = 16/165 (9%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D +DAEDA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPQDAEDAVYGRDGY 77
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN-----TRPSKTLFVINFDPYHTRTR 166
++ G RLRVE+ + RG R GGG +R S+ V++ P +
Sbjct: 78 DY--DGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 167 DLERHFEPYGKIISVRIRRN----FAFVQYEVQEDATRALDATNM 207
DL+ H G + + R+ FV+ E A R LD T
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGAVEFVRKEDMTYAVRKLDNTKF 180
>gi|426236979|ref|XP_004023550.1| PREDICTED: LOW QUALITY PROTEIN: serine/arginine-rich splicing
factor 1 [Ovis aries]
Length = 190
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 78/160 (48%), Gaps = 14/160 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRXGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERH 171
++ G RLRVE+ + RG R G R S N V++ P +DL+ H
Sbjct: 78 DY--DGYRLRVEFPRSGRGTGRRGRYGPPSRRSENR------VVVSGLPPSGSWQDLKDH 129
Query: 172 FEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
G + + R+ V++ +ED T A+ + +K
Sbjct: 130 MREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 169
>gi|91091338|ref|XP_966697.1| PREDICTED: similar to hnRNP protein [Tribolium castaneum]
Length = 282
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 8/165 (4%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y + DLER FR YG++ V +K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 6 VYVGGLPYGTTERDLERFFRGYGRMRDVLIKNGYGFVEFDDHRDADDAVYELNGKKL--L 63
Query: 117 GRRLRVEWTKHE-RGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRT--RDLERHFE 173
G R+ VE + RG + S R P++T + + + +R +DL+ +
Sbjct: 64 GERVTVERARGTPRGRDQWSSRSDHRSHERYGPPTRTNYRLIVENLSSRISWQDLKDYMR 123
Query: 174 PYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
G++ + + RN V++ D A++ + ++L R I
Sbjct: 124 QAGEVTYADAHKQHRNEGVVEFASYSDLKNAIEKLDDTELNGRRI 168
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 160 PYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 219
PY T RDLER F YG++ V I+ + FV+++ DA A+ N KL ++VE
Sbjct: 12 PYGTTERDLERFFRGYGRMRDVLIKNGYGFVEFDDHRDADDAVYELNGKKLLGERVTVER 71
Query: 220 A 220
A
Sbjct: 72 A 72
>gi|431904517|gb|ELK09900.1| Splicing factor, arginine/serine-rich 5 [Pteropus alecto]
Length = 223
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
+F G AR+ D+ER F+ YG++ +D+K GF F+ +D RDA+DA+ LD E
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 153 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTD 212
+F+ +P R +D+ER F+ YG+I + ++R F FV++E DA A+ + +L
Sbjct: 6 VFIGRLNP-AAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 213 RVISVEY 219
+++E+
Sbjct: 65 ERVTIEH 71
>gi|426233598|ref|XP_004023549.1| PREDICTED: LOW QUALITY PROTEIN: serine/arginine-rich splicing
factor 5 [Ovis aries]
Length = 274
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
+F G AR+ D+ER F+ YG + +D+K GF F+ +D RDA+DA+ LD E
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGXIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
>gi|290561142|gb|ADD37973.1| Splicing factor, arginine/serine-rich 7 [Lepeophtheirus salmonis]
Length = 304
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 112
M I+ GN R+S+L + F ++G++ + + GFA + D R +EDAIR +D
Sbjct: 1 MRGKIYIGNLNETIRKSELRQEFEKFGEISDLFVNHGFAHLTYVDTRSSEDAIRIMDGEV 60
Query: 113 FGRKGRRLRVEWTK-HERGIR 132
F G +LRVE ++ HE G R
Sbjct: 61 F--FGSKLRVEMSQDHEEGRR 79
>gi|55742372|ref|NP_001006919.1| serine/arginine-rich splicing factor 1 [Xenopus (Silurana)
tropicalis]
gi|92058727|sp|Q6DII2.1|SRSF1_XENTR RecName: Full=Serine/arginine-rich splicing factor 1; AltName:
Full=Splicing factor, arginine/serine-rich 1
gi|49523075|gb|AAH75558.1| splicing factor, arginine/serine-rich 1 (splicing factor 2,
alternate splicing factor) [Xenopus (Silurana)
tropicalis]
Length = 267
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 7/73 (9%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 112 EFGRKGRRLRVEW 124
++ G RLRVE+
Sbjct: 78 DY--DGYRLRVEF 88
>gi|402899743|ref|XP_003912847.1| PREDICTED: serine/arginine-rich splicing factor 1 [Papio anubis]
Length = 375
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 7/73 (9%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ G D
Sbjct: 145 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 204
Query: 112 EFGRKGRRLRVEW 124
++ G RLRVE+
Sbjct: 205 DY--DGYRLRVEF 215
>gi|42565781|ref|NP_190512.3| putative Pre-mRNA splicing factor SF2 [Arabidopsis thaliana]
gi|334185842|ref|NP_001190041.1| putative Pre-mRNA splicing factor SF2 [Arabidopsis thaliana]
gi|124301106|gb|ABN04805.1| At3g49430 [Arabidopsis thaliana]
gi|332645020|gb|AEE78541.1| putative Pre-mRNA splicing factor SF2 [Arabidopsis thaliana]
gi|332645022|gb|AEE78543.1| putative Pre-mRNA splicing factor SF2 [Arabidopsis thaliana]
Length = 300
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 76/185 (41%), Gaps = 39/185 (21%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E +F +YG++ +++K + F+ + RDAEDAI+G
Sbjct: 7 RSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKG-- 64
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN--------------------TRP 149
R + G RLRVE R G SS RR +R
Sbjct: 65 RDGYNLDGCRLRVELAHGGR-----GQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRH 119
Query: 150 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN----FAFVQYEVQED---ATRAL 202
S+ ++ P +DL+ H G + + R+ + V Y +D A R L
Sbjct: 120 SEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKL 179
Query: 203 DATNM 207
D T
Sbjct: 180 DDTEF 184
>gi|225708680|gb|ACO10186.1| RNA-binding protein 1 [Caligus rogercresseyi]
Length = 147
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 38/56 (67%), Gaps = 3/56 (5%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDAEDAIRGLD 109
++ GN +A + ++E +FRRYGKV V + GFAF+ +DERDAEDA +GLD
Sbjct: 12 VYVGNLGDNASKHEIEDVFRRYGKVRSVWVARNPPGFAFVEFEDERDAEDAAKGLD 67
>gi|119187025|ref|XP_001244119.1| hypothetical protein CIMG_03560 [Coccidioides immitis RS]
Length = 398
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 93/226 (41%), Gaps = 34/226 (15%)
Query: 57 IFCGNFEYDARQSDLERLFRRYG--KVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFG 114
F + + D+E F ++G K+ + + SGF FI +D DA D + D T+F
Sbjct: 107 FFAWTLLFPVTKQDVEEHFNQHGSGKITDIKLMSGFGFIEYEDALDARDVVP--DGTDF- 163
Query: 115 RKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPY-HTRTRDLERHFE 173
KG RL V++ RG R S S RP +T + + T +DL+
Sbjct: 164 -KGSRLTVQFA---RGPRHKETFSGPSDRSNAPRPRRTPYRMQISGLPETSWQDLKDFAR 219
Query: 174 PYGKII----SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDD--- 226
G + ++R FV++E D A++ + + ++ ++ DD
Sbjct: 220 QSGLDVVYSETLRDHEGRGFVEFETGADLKTAIEKLDGREFKGSRVTCTQDIQAPDDRPV 279
Query: 227 ----------RRNGHSPDRNRDRSPDRG-------RRRSPSPYRRE 255
RR G+ P + DR P RG R RSP P RR+
Sbjct: 280 RDPYRSRSPVRRGGYPPMDDYDRRPPRGYSPRGHYRERSPPPMRRD 325
>gi|12324445|gb|AAG52185.1|AC012329_12 putative splicing factor; 53460-55514 [Arabidopsis thaliana]
Length = 295
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 76/185 (41%), Gaps = 39/185 (21%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E +F +YG++ +++K + F+ + RDAEDAI+G
Sbjct: 7 RSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKG-- 64
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN--------------------TRP 149
R + G RLRVE R G SS RR +R
Sbjct: 65 RDGYNLDGCRLRVELAHGGR-----GQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRH 119
Query: 150 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN----FAFVQYEVQED---ATRAL 202
S+ ++ P +DL+ H G + + R+ + V Y +D A R L
Sbjct: 120 SEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKL 179
Query: 203 DATNM 207
D T
Sbjct: 180 DDTEF 184
>gi|443710288|gb|ELU04543.1| hypothetical protein CAPTEDRAFT_220292 [Capitella teleta]
Length = 291
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y R+ D+ER F+ YG+V + +K+G+ F+ +D RDA+DA+ L+ +
Sbjct: 5 VYIGRLSYQVRERDVERFFKGYGRVTDILLKNGYGFVEFEDYRDADDAVYELNGKDL--M 62
Query: 117 GRRLRVEWTK 126
G R+ VE K
Sbjct: 63 GDRVLVEHAK 72
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 161 YHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
Y R RD+ER F+ YG++ + ++ + FV++E DA A+ N L + VE+A
Sbjct: 12 YQVRERDVERFFKGYGRVTDILLKNGYGFVEFEDYRDADDAVYELNGKDLMGDRVLVEHA 71
>gi|238014292|gb|ACR38181.1| unknown [Zea mays]
gi|413950154|gb|AFW82803.1| hypothetical protein ZEAMMB73_678679 [Zea mays]
gi|448878172|gb|AGE46049.1| arginine/serine-rich splicing factor RS2Z37A transcript I [Zea
mays]
Length = 325
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G R DLE LF +YG++ V++K +AFI D RDA+DA LD +
Sbjct: 13 LYVGRLSPRTRSRDLEYLFSKYGRIREVELKRDYAFIEFSDPRDADDAQYNLDGRDV--D 70
Query: 117 GRRLRVEWTKHERGIRRPGGGS 138
G R+ VE+ K G+ R GGS
Sbjct: 71 GSRIIVEFAK---GVPRGSGGS 89
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 153 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTD 212
L+V P TR+RDLE F YG+I V ++R++AF+++ DA A + +
Sbjct: 13 LYVGRLSP-RTRSRDLEYLFSKYGRIREVELKRDYAFIEFSDPRDADDAQYNLDGRDVDG 71
Query: 213 RVISVEYA 220
I VE+A
Sbjct: 72 SRIIVEFA 79
>gi|166091440|ref|NP_001107213.1| serine/arginine-rich splicing factor 1 [Gallus gallus]
Length = 248
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN-----TRPSKTLFVINFDPYHTRTR 166
++ G RLRVE+ + RG R GGG +R S+ +++ P +
Sbjct: 78 DY--DGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQ 135
Query: 167 DLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
DL+ H G + + R+ V++ +ED T A+ + +K
Sbjct: 136 DLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
>gi|402219133|gb|EJT99207.1| hypothetical protein DACRYDRAFT_23817 [Dacryopinax sp. DJM-731 SS1]
Length = 319
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 68/164 (41%), Gaps = 7/164 (4%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
I+ G DA + D+E+ F YG++ + + +GF F+ ++ +DAED +
Sbjct: 6 IYIGKMPRDAMKQDIEKFFEGYGRIQDIRIMNGFGFVEFENPKDAEDVVANFQGKNL--L 63
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYG 176
G + +E K R R GGG R P TR +I+ T +DL+ G
Sbjct: 64 GEPIIIELAKESR--RERGGGFEERGPRPFTRRPGYRVLIHGVSRDTSWQDLKDFGREAG 121
Query: 177 KIISVRIRRNF---AFVQYEVQEDATRALDATNMSKLTDRVISV 217
+ + R ++Y +D AL N +L + V
Sbjct: 122 AVTFSDLDRENPGEGILEYLTPDDLENALRLLNNRELRGVTVRV 165
>gi|118835441|gb|AAI28932.1| Sfrs1 protein [Xenopus laevis]
Length = 294
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 7/73 (9%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ G D
Sbjct: 48 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 107
Query: 112 EFGRKGRRLRVEW 124
++ G RLRVE+
Sbjct: 108 DY--DGYRLRVEF 118
>gi|443712169|gb|ELU05591.1| hypothetical protein CAPTEDRAFT_222188 [Capitella teleta]
Length = 225
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG----FAFIYMDDERDAEDAIRGLDRTE 112
+F G + R DLE F +YG++ R D+K G +AF+ +D RDAEDA++ + E
Sbjct: 9 LFIGRLDKHTRTRDLEDRFEKYGRILRCDVKYGAEMAYAFLDFEDHRDAEDALKEENGRE 68
Query: 113 FGRKGRRLRVEWTK 126
+ +G + VEW K
Sbjct: 69 Y--QGVSMVVEWAK 80
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 148 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR----RNFAFVQYEVQEDATRALD 203
R +LF+ D HTRTRDLE FE YG+I+ ++ +AF+ +E DA AL
Sbjct: 4 RSQGSLFIGRLDK-HTRTRDLEDRFEKYGRILRCDVKYGAEMAYAFLDFEDHRDAEDALK 62
Query: 204 ATNMSKLTDRVISVEYA 220
N + + VE+A
Sbjct: 63 EENGREYQGVSMVVEWA 79
>gi|225714554|gb|ACO13123.1| Splicing factor, arginine/serine-rich 7 [Lepeophtheirus salmonis]
gi|290462113|gb|ADD24104.1| Splicing factor, arginine/serine-rich 7 [Lepeophtheirus salmonis]
Length = 308
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 112
M I+ GN R+S+L + F ++G++ + + GFA + D R +EDAIR +D
Sbjct: 1 MRGKIYIGNLNETIRKSELRQEFEKFGEISDLFVNHGFAHLTYVDTRSSEDAIRIMDGEV 60
Query: 113 FGRKGRRLRVEWTK-HERGIR 132
F G +LRVE ++ HE G R
Sbjct: 61 F--FGSKLRVEMSQDHEEGRR 79
>gi|326482144|gb|EGE06154.1| pre-mRNA splicing factor [Trichophyton equinum CBS 127.97]
Length = 304
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 84/194 (43%), Gaps = 13/194 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYG--KVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFG 114
++ GN + + D+E F +G K+ + + GF FI +D DA+D + T+F
Sbjct: 9 LYLGNLPRNVNKQDIEEHFGSHGTGKITEIKLMQGFGFIEYEDAMDAKDVVPAFHGTDF- 67
Query: 115 RKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPY-HTRTRDLERHFE 173
KG RL V++ + R R P G R S RP +T++ + T +DL+
Sbjct: 68 -KGERLTVQFARGPR-RREPFPGPPER--SAAPRPRRTIYRMQITGLPETSWQDLKDFAR 123
Query: 174 PYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNG 230
G + R R FV++E D A++ + + ++ ++ + R
Sbjct: 124 QSGLDVVYSETRDRDGKGFVEFENGNDLRTAVEKLDGTDFKGSRVTCTADIQPPMEDRVP 183
Query: 231 HSPDRNRDRSPDRG 244
P R RSP RG
Sbjct: 184 RDP--YRSRSPRRG 195
>gi|2435503|gb|AAC39946.1| HRS [Mus musculus]
Length = 270
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
+F G AR+ D+ER F+ YG++ +D+K GF F+ +D RDA+DA+ LD E
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
>gi|393216709|gb|EJD02199.1| RNA-binding domain-containing protein [Fomitiporia mediterranea
MF3/22]
Length = 270
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 95/217 (43%), Gaps = 15/217 (6%)
Query: 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 112
M R ++ G D R ++ + F +G + V + +GF F+ + RDAEDA+R +
Sbjct: 1 MARRLYLGKLPPDTRTDEVTKYFDGFGPLVDVRVMTGFGFVEFESSRDAEDALRDIRGKP 60
Query: 113 FGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHF 172
F G + VE+ K RG R R + RP+ ++ T +DL+
Sbjct: 61 F--LGSNIVVEFAKENRGRR---NDYEDRSFAPRRRPAGIRISVDNISKDTSWQDLKDFG 115
Query: 173 EPYGKIISVRIRRNF---AFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR----DDD 225
G + I R ++Y ++DA +A+ + +L + + V D+
Sbjct: 116 REAGSVSFADIDREVPGRGILEYASRDDAEQAVKELDGKELRGQPVHVTMDEDRGGPDNF 175
Query: 226 DRRNGHSPDRNRDRSP--DRGRRRSPSPYRRER-GSP 259
R +G+ DR RDR DR R S P RR R GSP
Sbjct: 176 RRDDGYRGDRYRDRGDRYDRNDRFSARPPRRGRSGSP 212
>gi|301104435|ref|XP_002901302.1| splicing factor, arginine/serine-rich, putative [Phytophthora
infestans T30-4]
gi|262100777|gb|EEY58829.1| splicing factor, arginine/serine-rich, putative [Phytophthora
infestans T30-4]
Length = 214
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 10/83 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG-----FAFIYMDDERDAEDAIRGL 108
M +F GN D R+ +L F RYG++ V +K FAF+ ++E+DA DA+R +
Sbjct: 1 MARVFVGNLPEDVRERELSDKFERYGRITSVRIKFPARPPPFAFLTYENEQDASDAVRSM 60
Query: 109 DRTEFGRKGRRLRVEWTKHERGI 131
+ T FG G R+RVE + RGI
Sbjct: 61 NNTTFG--GSRIRVEMS---RGI 78
>gi|169853086|ref|XP_001833224.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
gi|116505602|gb|EAU88497.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
Length = 681
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 90/220 (40%), Gaps = 23/220 (10%)
Query: 38 FRRSHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGK-------VDRVDMKSGF 90
R Q + A ++ N + + Q + LF++YG VD GF
Sbjct: 213 ISRKERQSKLEEMRAQFTNLYVKNLDPEVTQDEFIELFKKYGNVTSAVISVDEEGKSKGF 272
Query: 91 AFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV----EWTKHERGIRRPGGGSSARRPSTN 146
F+ + +A+ A+ L+ +F KG++L V + + E +RR A+ +
Sbjct: 273 GFVNFETHDEAQKAVDELN--DFELKGKKLFVSRAQKKAEREEELRR--SYEQAKLEKLS 328
Query: 147 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN-------FAFVQYEVQEDAT 199
L++ N + L FEP+G I S ++ R+ F FV + ++AT
Sbjct: 329 KYQGVNLYIKNLED-DVDDDKLRAEFEPFGTITSCKVMRDEKGQSKGFGFVCFSSPDEAT 387
Query: 200 RALDATNMSKLTDRVISVEYAVRDDDDRRNGHSPDRNRDR 239
+A+ N + + + V A R + R+ S R++
Sbjct: 388 KAVAEMNNKMIGTKPLYVSLAQRREVRRQQLESQIAQRNQ 427
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 70/175 (40%), Gaps = 25/175 (14%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKSGFAFIYMDDERDAEDAIRGLD 109
IF N + L F +G V D G+ F++ + AE+AI+ ++
Sbjct: 139 IFIKNLDEAIDNKALHDTFAAFGTVLSCKVATDETGRSKGYGFVHYETAEAAENAIKAVN 198
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLE 169
K + ++ ER + R TN L+V N DP T+ +E
Sbjct: 199 GMLLNDKKVYVGHHISRKERQSKL----EEMRAQFTN------LYVKNLDPEVTQDEFIE 248
Query: 170 RHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
F+ YG + S I + F FV +E ++A +A+D N +L + + V
Sbjct: 249 L-FKKYGNVTSAVISVDEEGKSKGFGFVNFETHDEAQKAVDELNDFELKGKKLFV 302
>gi|45433540|ref|NP_956887.2| serine/arginine-rich splicing factor 1B [Danio rerio]
gi|71162369|sp|Q6NYA0.1|SRS1B_DANRE RecName: Full=Serine/arginine-rich splicing factor 1B; AltName:
Full=Splicing factor, arginine/serine-rich 1; AltName:
Full=Splicing factor, arginine/serine-rich 1B
gi|44890669|gb|AAH66682.1| Splicing factor, arginine/serine-rich 1 (splicing factor 2,
alternate splicing factor) [Danio rerio]
Length = 245
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ G D
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 76
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN-----TRPSKTLFVINFDPYHTRTR 166
++ G RLRVE+ + RG R GGG +R S+ +++ P +
Sbjct: 77 DY--DGYRLRVEFPRSGRGGGRGGGGGGGVGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQ 134
Query: 167 DLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
DL+ H G + + R+ V++ +ED T A+ + +K
Sbjct: 135 DLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKF 179
>gi|388505636|gb|AFK40884.1| unknown [Lotus japonicus]
Length = 344
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 40/80 (50%), Gaps = 9/80 (11%)
Query: 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI--------RRNFAFVQYEVQEDATR 200
P L+V P T+ R+LE+HF GK+I V + R F FV + EDA R
Sbjct: 46 PGNNLYVTGLSPRITK-RELEKHFATEGKVIDVHLVVDPWTRESRGFGFVTMDTLEDANR 104
Query: 201 ALDATNMSKLTDRVISVEYA 220
+ N S L RVI+VE A
Sbjct: 105 CVKYLNRSVLEGRVITVEKA 124
>gi|27503247|gb|AAH42354.1| Sfrs1 protein, partial [Xenopus laevis]
Length = 283
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 7/73 (9%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ G D
Sbjct: 37 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 96
Query: 112 EFGRKGRRLRVEW 124
++ G RLRVE+
Sbjct: 97 DY--DGYRLRVEF 107
>gi|149053805|gb|EDM05622.1| rCG34610, isoform CRA_a [Rattus norvegicus]
Length = 214
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 72/160 (45%), Gaps = 37/160 (23%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERH 171
++ G RLRVE+ + S R P + + +DL+ H
Sbjct: 78 DY--DGYRLRVEFPR------------SGRLPPSGS-----------------WQDLKDH 106
Query: 172 FEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
G + + R+ V++ +ED T A+ + +K
Sbjct: 107 MREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 146
>gi|449274550|gb|EMC83651.1| Splicing factor, arginine/serine-rich 7, partial [Columba livia]
Length = 226
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMK---SGFAFIYMDDERDAEDAIRGLDRTEF 113
++ GN A +S+LER F YG + V + GFAF+ +D RDAEDA+RGLD
Sbjct: 4 VYVGNLGTGAGKSELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVI 63
Query: 114 GRKGRRLRVE 123
G R+RVE
Sbjct: 64 --CGSRVRVE 71
>gi|68075657|ref|XP_679748.1| splicing factor [Plasmodium berghei strain ANKA]
gi|56500569|emb|CAH96908.1| splicing factor, putative [Plasmodium berghei]
Length = 287
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMK-----SGFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D+E FR++G + + D+K + FAFI +D RDA DAI+ D
Sbjct: 10 IYVGNLPSHVTSRDVENEFRKFGTILKCDVKKTVSGAAFAFIEFEDARDAADAIKEKDGC 69
Query: 112 EFGRKGRRLRVE 123
+FG G +LRVE
Sbjct: 70 DFG--GNKLRVE 79
Score = 37.7 bits (86), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 153 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN-----FAFVQYEVQEDATRAL 202
++V N P H +RD+E F +G I+ +++ FAF+++E DA A+
Sbjct: 10 IYVGNL-PSHVTSRDVENEFRKFGTILKCDVKKTVSGAAFAFIEFEDARDAADAI 63
>gi|82540657|ref|XP_724630.1| splicing factor 1 [Plasmodium yoelii yoelii 17XNL]
gi|23479337|gb|EAA16195.1| splicing factor, arginine/serine-rich 1 [Plasmodium yoelii yoelii]
Length = 309
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 72/168 (42%), Gaps = 23/168 (13%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMK-----SGFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D+E FR++G + + D+K + FAFI +D RDA DAI+ D
Sbjct: 10 IYVGNLPSHVTSRDVENEFRKFGTILKCDVKKTVSGAAFAFIEFEDARDAADAIKEKDGC 69
Query: 112 EFGRKGRRLRVEW--------TKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHT 163
+FG G +LRVE + RG G GS +RR S P
Sbjct: 70 DFG--GNKLRVEVPFNARDNGKYNSRGRGMMGRGSKSRRGRYVVEVSGL-------PLSG 120
Query: 164 RTRDLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
+DL+ H G+ + +N V + +ED A++ N S
Sbjct: 121 SWQDLKDHLREAGECGHADVFKNGTGEVSFFHKEDMLEAIEKFNGSTF 168
>gi|291190420|ref|NP_001167114.1| Splicing factor, arginine/serine-rich 1 [Salmo salar]
gi|223648208|gb|ACN10862.1| Splicing factor, arginine/serine-rich 1 [Salmo salar]
Length = 251
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 14/166 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAFI +D RDA+DA+ G D
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFIEFEDPRDADDAVYGRDGY 76
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN------TRPSKTLFVINFDPYHTRT 165
++ G RLRVE+ + RG R G G + +R S+ +++ P
Sbjct: 77 DY--DGYRLRVEFPRSGRGGGRGGFGGGGVGGAPRGRYGPPSRRSEYRVIVSGLPQSGSW 134
Query: 166 RDLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
+DL+ H G + + R+ V++ +ED T A+ + +K
Sbjct: 135 QDLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
>gi|347972221|ref|XP_003436860.1| AGAP004592-PE [Anopheles gambiae str. PEST]
gi|333469348|gb|EGK97259.1| AGAP004592-PE [Anopheles gambiae str. PEST]
Length = 351
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 30/184 (16%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y R+ DLER F+ YG+ + +K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 6 VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKEL--L 63
Query: 117 GRRLRVEWTKHERGIRR-PGGG-------------------SSARRPSTNTRPSKTLFVI 156
G R+ VE RG R P G S++R S P +T + +
Sbjct: 64 GERVVVEPA---RGTARGPSGYRERDRYDRDRRGGRYDKYKSNSRNSSRYGPPLRTEYRL 120
Query: 157 NFDPYHTRT--RDLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLT 211
+ TR +DL+ + G++ + + R+N V++ D A++ + ++L
Sbjct: 121 VVENLSTRVSWQDLKDYMRQAGEVTYADAHKQRKNEGVVEFATLSDMKTAIEKLDDTELN 180
Query: 212 DRVI 215
R I
Sbjct: 181 GRRI 184
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 160 PYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
PY R RDLER F+ YG+ + I+ + FV++E DA A+ N +L + VE
Sbjct: 12 PYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVE 70
>gi|241849002|ref|XP_002415663.1| alternative splicing factor ASF/SF2, putative [Ixodes scapularis]
gi|215509877|gb|EEC19330.1| alternative splicing factor ASF/SF2, putative [Ixodes scapularis]
Length = 223
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS----GFAFIYMDDERDAEDAIRGLDRTE 112
I+ GN D R D+E LF ++GK+ +D+K+ FAF+ +D RDAEDA D +
Sbjct: 10 IYVGNLPPDIRTKDIEDLFYKFGKITFIDLKNRRGPPFAFVEFEDPRDAEDAAHARDGYD 69
Query: 113 FGRKGRRLRVEW 124
+ G RLRVE+
Sbjct: 70 Y--DGYRLRVEF 79
>gi|114108043|gb|AAI23123.1| Sfrs1 protein [Xenopus laevis]
Length = 296
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 7/73 (9%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ G D
Sbjct: 50 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 109
Query: 112 EFGRKGRRLRVEW 124
++ G RLRVE+
Sbjct: 110 DY--DGYRLRVEF 120
>gi|70947849|ref|XP_743501.1| splicing factor [Plasmodium chabaudi chabaudi]
gi|56523027|emb|CAH75823.1| splicing factor, putative [Plasmodium chabaudi chabaudi]
Length = 283
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMK-----SGFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D+E FR++G + + D+K + FAFI +D RDA DAI+ D
Sbjct: 10 IYVGNLPSHVTSRDVENEFRKFGTILKCDVKKTVSGAAFAFIEFEDARDAADAIKEKDGC 69
Query: 112 EFGRKGRRLRVE 123
+FG G +LRVE
Sbjct: 70 DFG--GNKLRVE 79
Score = 37.7 bits (86), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 153 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN-----FAFVQYEVQEDATRAL 202
++V N P H +RD+E F +G I+ +++ FAF+++E DA A+
Sbjct: 10 IYVGNL-PSHVTSRDVENEFRKFGTILKCDVKKTVSGAAFAFIEFEDARDAADAI 63
>gi|300121283|emb|CBK21663.2| unnamed protein product [Blastocystis hominis]
Length = 381
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 72/167 (43%), Gaps = 16/167 (9%)
Query: 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK----SGFAFIYMDDERDAEDAIRGL 108
M +F N D R+S+L+ F RYG V V +K + + F+ ++E AE+A++G
Sbjct: 1 MPSKVFVANLPKDVRESELKDEFSRYGTVIDVTLKLTGHTPYGFVEFEEESAAEEAVKGK 60
Query: 109 DRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFD--PYHTRTR 166
+ + G G LRVE G G R S P T + + PYH +
Sbjct: 61 NGSVLG--GLSLRVEVAN--------GRGPKGDRGSKYGPPVHTNYRVEVTHLPYHCSWQ 110
Query: 167 DLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDR 213
DL+ H G + + V+Y +D RA+ + SK R
Sbjct: 111 DLKDHMRKEGDVGYCSVDGGVGIVEYTNYDDMMRAIKYLDDSKCLSR 157
>gi|118582269|ref|NP_001071634.1| serine/arginine-rich splicing factor 1 isoform 2 [Homo sapiens]
gi|45708738|gb|AAH33785.1| SFRS1 protein [Homo sapiens]
gi|119614895|gb|EAW94489.1| splicing factor, arginine/serine-rich 1 (splicing factor 2,
alternate splicing factor), isoform CRA_d [Homo sapiens]
gi|168277706|dbj|BAG10831.1| splicing factor, arginine/serine-rich 1 [synthetic construct]
gi|410263646|gb|JAA19789.1| serine/arginine-rich splicing factor 1 [Pan troglodytes]
gi|410308966|gb|JAA33083.1| serine/arginine-rich splicing factor 1 [Pan troglodytes]
gi|410351429|gb|JAA42318.1| serine/arginine-rich splicing factor 1 [Pan troglodytes]
Length = 201
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN-----TRPSKTLFVINFDPYHTRTR 166
++ G RLRVE+ + RG R GGG +R S+ V++ P +
Sbjct: 78 DY--DGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 167 DLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
DL+ H G + + R+ V++ +ED T A+ + +K
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
>gi|321472329|gb|EFX83299.1| hypothetical protein DAPPUDRAFT_195083 [Daphnia pulex]
Length = 221
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y ++ D+ER FR YGK+ V +K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 5 VYIGGLPYRVKERDIERFFRGYGKLREVLIKNGYGFVEFEDYRDADDAVYELNGKELC-- 62
Query: 117 GRRLRVE 123
G R+ VE
Sbjct: 63 GERVSVE 69
>gi|443725387|gb|ELU13010.1| hypothetical protein CAPTEDRAFT_155910 [Capitella teleta]
Length = 268
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMK---SGFAFIYMDDERDAEDAIRGLDRTEF 113
++ G+ DA++ +LER F YG + V + GFAF+ +D RDA+D++RGLD +
Sbjct: 32 VYVGDLPRDAQEKELERAFSYYGPLKSVWVARNPPGFAFVEFEDPRDADDSVRGLDGSSL 91
Query: 114 GRKGRRLRVEWT 125
G R+RVE +
Sbjct: 92 C--GTRVRVELS 101
>gi|198422995|ref|XP_002122454.1| PREDICTED: zinc finger (CCHC)-24 isoform 2 [Ciona intestinalis]
Length = 205
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDAEDAIRGLDRTEF 113
I+ GN + DLE F YG++ V + GFA++ +D RDA+DAI+GLD E
Sbjct: 7 IYVGNLSSSTTRGDLEYEFEYYGRLINVWVAKSPPGFAYVEFEDPRDADDAIKGLDGKEL 66
Query: 114 GRKGRRLRVE 123
GRR+RVE
Sbjct: 67 --HGRRIRVE 74
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 153 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN---FAFVQYEVQEDATRALDATNMSK 209
++V N TR DLE FE YG++I+V + ++ FA+V++E DA A+ + +
Sbjct: 7 IYVGNLSSSTTRG-DLEYEFEYYGRLINVWVAKSPPGFAYVEFEDPRDADDAIKGLDGKE 65
Query: 210 LTDRVISVE 218
L R I VE
Sbjct: 66 LHGRRIRVE 74
>gi|1781299|emb|CAA70700.1| transformer-SR ribonucleoprotein [Nicotiana tabacum]
Length = 235
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 147 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISV--------RIRRNFAFVQYEVQEDA 198
+ P TL+V T RDLE HF GK+ SV RI R FAF+ + EDA
Sbjct: 62 SNPGNTLYVTGLSTRVTE-RDLEEHFSKEGKVKSVFLVVEPRSRISRGFAFITMDSLEDA 120
Query: 199 TRALDATNMSKLTDRVISVE 218
R + N S L R I+VE
Sbjct: 121 NRCIKHLNQSVLEGRYITVE 140
>gi|357441749|ref|XP_003591152.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
gi|355480200|gb|AES61403.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
Length = 334
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 83/192 (43%), Gaps = 34/192 (17%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R ++ GN D R ++E LF +YG + +D+K G+AF+ +D RDA+DAI D
Sbjct: 38 RTLYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIYYRD 97
Query: 110 RTEFGRKGRRLRVEWTKHERG-------IRRPGGGSSARRPSTNTRPSKTLFVINFDPYH 162
+F G RL VE RG R G S +R S R S ++ P
Sbjct: 98 GYDF--DGYRLLVELAHGGRGSSSSVDRYSRHSGRSGSRGVS---RRSDYRVLVTGLPPS 152
Query: 163 TRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 222
+DL+ H G + ++ R + T +D TN V+YA+R
Sbjct: 153 ASWQDLKDHMRKAGHVCFSQVFRE--------RGGLTGIVDYTNYDD-------VKYAIR 197
Query: 223 --DDDDRRNGHS 232
DD + RN S
Sbjct: 198 KLDDSEFRNAFS 209
>gi|443899862|dbj|GAC77190.1| alternative splicing factor SRp55/B52/SRp75 [Pseudozyma antarctica
T-34]
Length = 260
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 26/178 (14%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G D R+ D++ LFR YG++ V + F F+ + RDAEDA++ D F
Sbjct: 5 VYVGKLPPDVRRGDIDDLFRDYGRLQDVRIMGSFGFVEFEHPRDAEDAVKDFDGRNF--M 62
Query: 117 GRRLRVEWTKHERGIRRPGG---------------------GSSARRPSTNTRPSKTLFV 155
G R+ V+ K R P G G+ R R + +
Sbjct: 63 GERIVVQHAKSGERRREPAGYGADPYDRRGGPPGREPPSRYGAPPPRREPRIRRGQFRCI 122
Query: 156 INFDPYHTRTRDLERHFEPYGKIISVRI---RRNFAFVQYEVQEDATRALDATNMSKL 210
++ P +T +DL+ +G I + R + ++Y+ ++D RALD +L
Sbjct: 123 VSNLPPNTSWQDLKDIGREHGSISFADVDPSRPDEGVIEYDNRDDYERALDKIEGIEL 180
>gi|156084620|ref|XP_001609793.1| splicing factor, arginine/serine-rich 3 [Babesia bovis T2Bo]
gi|154797045|gb|EDO06225.1| splicing factor, arginine/serine-rich 3, putative [Babesia bovis]
Length = 239
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 7/72 (9%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMK-----SGFAFIYMDDERDAEDAIRGLDRT 111
++ GN Q D+E F ++GK+ D+K S FAF+ +D RDA DAI+ D +
Sbjct: 10 VYVGNLPESCTQKDIEDEFGKFGKLISCDLKKNAGGSTFAFLEYEDARDAHDAIKDRDGS 69
Query: 112 EFGRKGRRLRVE 123
E+ +GRRLRVE
Sbjct: 70 EY--EGRRLRVE 79
>gi|63101956|gb|AAH95586.1| Sfrs1 protein [Danio rerio]
gi|182889684|gb|AAI65510.1| Sfrs1 protein [Danio rerio]
Length = 258
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 7/73 (9%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ G D
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGQPFAFVEFEDPRDAEDAVYGRDGY 76
Query: 112 EFGRKGRRLRVEW 124
++ G RLRVE+
Sbjct: 77 DY--DGYRLRVEF 87
>gi|354488931|ref|XP_003506619.1| PREDICTED: serine/arginine-rich splicing factor 7-like [Cricetulus
griseus]
Length = 227
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK---SGFAFIYMDDERDAEDAIRGLD 109
M ++ GN A + +LER F YG + V + GFAF+ +D RDAEDA+RGLD
Sbjct: 1 MQTKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLD 60
Query: 110 RTEFGRKGRRLRVEWT 125
G R+RVE +
Sbjct: 61 GKVI--CGSRVRVELS 74
>gi|354472029|ref|XP_003498243.1| PREDICTED: serine/arginine-rich splicing factor 1 [Cricetulus
griseus]
Length = 201
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN-----TRPSKTLFVINFDPYHTRTR 166
++ G RLRVE+ + RG R GGG +R S+ V++ P +
Sbjct: 78 DY--DGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 167 DLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
DL+ H G + + R+ V++ +ED T A+ + +K
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
>gi|91085405|ref|XP_967263.1| PREDICTED: similar to GA20008-PA [Tribolium castaneum]
gi|270009156|gb|EFA05604.1| hypothetical protein TcasGA2_TC015810 [Tribolium castaneum]
Length = 226
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS----GFAFIYMDDERDAEDAIRGLDRTE 112
I+ GN D R D++ LF ++GKV VD+K+ FAF+ +D RDA+DA+ D +
Sbjct: 10 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRRGPPFAFVEFEDPRDADDAVHARDGYD 69
Query: 113 FGRKGRRLRVEW 124
+ G RLRVE+
Sbjct: 70 Y--DGYRLRVEF 79
>gi|179074|gb|AAA35564.1| alternative [Homo sapiens]
gi|119614894|gb|EAW94488.1| splicing factor, arginine/serine-rich 1 (splicing factor 2,
alternate splicing factor), isoform CRA_c [Homo sapiens]
Length = 292
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 7/73 (9%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 112 EFGRKGRRLRVEW 124
++ G RLRVE+
Sbjct: 78 DY--DGYRLRVEF 88
>gi|417397107|gb|JAA45587.1| Putative serine/arginine-rich splicing factor 1 isoform 2 [Desmodus
rotundus]
Length = 207
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN-----TRPSKTLFVINFDPYHTRTR 166
++ G RLRVE+ + RG R GGG +R S+ V++ P +
Sbjct: 78 DY--DGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 167 DLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
DL+ H G + + R+ V++ +ED T A+ + +K
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
>gi|348562137|ref|XP_003466867.1| PREDICTED: serine/arginine-rich splicing factor 1-like isoform 1
[Cavia porcellus]
gi|380788319|gb|AFE66035.1| serine/arginine-rich splicing factor 1 isoform 2 [Macaca mulatta]
gi|383420723|gb|AFH33575.1| serine/arginine-rich splicing factor 1 isoform 2 [Macaca mulatta]
gi|384941914|gb|AFI34562.1| serine/arginine-rich splicing factor 1 isoform 2 [Macaca mulatta]
Length = 201
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN-----TRPSKTLFVINFDPYHTRTR 166
++ G RLRVE+ + RG R GGG +R S+ V++ P +
Sbjct: 78 DY--DGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 167 DLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
DL+ H G + + R+ V++ +ED T A+ + +K
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
>gi|34785174|gb|AAH56752.1| Sfrs1 protein [Danio rerio]
Length = 188
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 83/172 (48%), Gaps = 13/172 (7%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ G D
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 76
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN-----TRPSKTLFVINFDPYHTRTR 166
++ G RLRVE+ + RG R GGG +R S+ +++ P +
Sbjct: 77 DY--DGYRLRVEFPRSGRGGGRGGGGGGGVGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQ 134
Query: 167 DLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKLTDRVISV 217
DL+ H G + + R+ V++ +ED T A+ + +K + V
Sbjct: 135 DLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEVGV 186
>gi|449707912|gb|EMD47478.1| zinc knuckle domain containing protein [Entamoeba histolytica KU27]
Length = 199
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 38/62 (61%)
Query: 66 ARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 125
R+SD+ +F +Y K++R+D+K+GF F+ + E DA+ I T F + +++ +E +
Sbjct: 1 MRESDVREMFSKYTKIERIDIKTGFCFVVCETEEDAKKIIDLSQTTPFMFRDKKINIELS 60
Query: 126 KH 127
K
Sbjct: 61 KQ 62
>gi|313212059|emb|CBY17785.1| unnamed protein product [Oikopleura dioica]
Length = 259
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 56 PIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGR 115
+F G AR D+E F +YGKV ++ ++ + F+ DD RDAEDAI+ LD +
Sbjct: 6 TVFIGGLSDRARDKDIEDFFDKYGKVTQIRLRDRYGFVDFDDRRDAEDAIKDLDGSSLC- 64
Query: 116 KGRRLRVE 123
G R+R+E
Sbjct: 65 -GERVRLE 71
>gi|363731484|ref|XP_003640982.1| PREDICTED: uncharacterized protein LOC100859609 [Gallus gallus]
Length = 250
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMK---SGFAFIYMDDERDAEDAIRGLDRTEF 113
++ GN A + +LER F YG + V + GFAF+ +D RDAEDA+RGLD
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVI 72
Query: 114 GRKGRRLRVE 123
G R+RVE
Sbjct: 73 --CGSRVRVE 80
>gi|355568562|gb|EHH24843.1| hypothetical protein EGK_08569 [Macaca mulatta]
Length = 292
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 7/73 (9%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 112 EFGRKGRRLRVEW 124
++ G RLRVE+
Sbjct: 78 DY--YGYRLRVEF 88
>gi|351713363|gb|EHB16282.1| Splicing factor, arginine/serine-rich 1 [Heterocephalus glaber]
Length = 292
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 7/73 (9%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 112 EFGRKGRRLRVEW 124
++ G RLRVE+
Sbjct: 78 DY--DGYRLRVEF 88
>gi|336088099|dbj|BAK39909.1| splicing factor, arginine/serine-rich 1, transcript variant 2
[Cricetulus griseus]
Length = 201
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN-----TRPSKTLFVINFDPYHTRTR 166
++ G RLRVE+ + RG R GGG +R S+ V++ P +
Sbjct: 78 DY--DGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 167 DLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
DL+ H G + + R+ V++ +ED T A+ + +K
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
>gi|118582271|ref|NP_001071635.1| serine/arginine-rich splicing factor 1 isoform 2 [Mus musculus]
gi|26347437|dbj|BAC37367.1| unnamed protein product [Mus musculus]
Length = 201
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN-----TRPSKTLFVINFDPYHTRTR 166
++ G RLRVE+ + RG R GGG +R S+ V++ P +
Sbjct: 78 DY--DGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 167 DLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
DL+ H G + + R+ V++ +ED T A+ + +K
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
>gi|409082207|gb|EKM82565.1| hypothetical protein AGABI1DRAFT_111169 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426200034|gb|EKV49958.1| hypothetical protein AGABI2DRAFT_190388 [Agaricus bisporus var.
bisporus H97]
Length = 289
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 76/173 (43%), Gaps = 16/173 (9%)
Query: 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 112
M R ++ G DAR D+++ F +G++ + +GF F+ + +DAE+A+ +
Sbjct: 1 MSRRLYLGRLPPDARSEDVQKFFDGFGRIIDCRVMTGFGFVEFESPKDAEEAVHTFNGKS 60
Query: 113 FGRKGRRLRVEWTKHERGIRRP-----GGGSSARRPSTNTRPSKTLFVINFDPYHTRTRD 167
F G + VE+ K R R P G G ARRP P L V T +D
Sbjct: 61 F--MGANIVVEFAKESRPRREPYENERGHGPRARRP-----PGIRLVVTGV-SRDTSWQD 112
Query: 168 LERHFEPYGKIISVRIRRNF---AFVQYEVQEDATRALDATNMSKLTDRVISV 217
L+ G + I R ++Y +EDA RA+ + +L R + V
Sbjct: 113 LKDFGRDAGSVSFADIDRESPGQGVLEYLNREDADRAVRELDGKELRGRPVRV 165
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 160 PYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 219
P R+ D+++ F+ +G+II R+ F FV++E +DA A+ N I VE+
Sbjct: 11 PPDARSEDVQKFFDGFGRIIDCRVMTGFGFVEFESPKDAEEAVHTFNGKSFMGANIVVEF 70
Query: 220 A 220
A
Sbjct: 71 A 71
>gi|407042235|gb|EKE41220.1| zinc knuckle domain containing protein [Entamoeba nuttalli P19]
Length = 190
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 38/62 (61%)
Query: 66 ARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 125
R+SD+ +F +Y K++R+D+K+GF F+ + E DA+ I T F + +++ +E +
Sbjct: 1 MRESDVREMFSKYTKIERIDIKTGFCFVVCETEEDAKKIIDLSQTTPFMFRDKKINIELS 60
Query: 126 KH 127
K
Sbjct: 61 KQ 62
>gi|7637|emb|CAA44483.1| 52-kD bracketing protein [Drosophila melanogaster]
Length = 376
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y R+ DLER F+ YG+ + +K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 6 VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKEL--L 63
Query: 117 GRRLRVE 123
G R+ VE
Sbjct: 64 GERVVVE 70
>gi|183237523|ref|XP_651801.2| SON DNA-binding protein [Entamoeba histolytica HM-1:IMSS]
gi|169799017|gb|EAL46414.2| SON DNA-binding protein, putative [Entamoeba histolytica HM-1:IMSS]
Length = 220
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 38/62 (61%)
Query: 66 ARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 125
R+SD+ +F +Y K++R+D+K+GF F+ + E DA+ I T F + +++ +E +
Sbjct: 1 MRESDVREMFSKYTKIERIDIKTGFCFVVCETEEDAKKIIDLSQTTPFMFRDKKINIELS 60
Query: 126 KH 127
K
Sbjct: 61 KQ 62
>gi|255636876|gb|ACU18771.1| unknown [Glycine max]
Length = 246
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 152 TLFVINFDPYHTRTRDLERHFEPYGKIISV--------RIRRNFAFVQYEVQEDATRALD 203
TL+V T RDLE HF GK+ S RI R FAF+ + EDA R +
Sbjct: 70 TLYVTGLSSRVTE-RDLEEHFSKEGKVASCFLVVEPRTRISRGFAFITMDTVEDANRCIK 128
Query: 204 ATNMSKLTDRVISVE 218
N S L R I+VE
Sbjct: 129 YLNQSVLEGRYITVE 143
>gi|350538991|ref|NP_001232123.1| putative splicing factor arginine/serine-rich 7 variant 2
[Taeniopygia guttata]
gi|197127816|gb|ACH44314.1| putative splicing factor arginine/serine-rich 7 variant 2
[Taeniopygia guttata]
Length = 250
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMK---SGFAFIYMDDERDAEDAIRGLDRTEF 113
++ GN A + +LER F YG + V + GFAF+ +D RDAEDA+RGLD
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVI 72
Query: 114 GRKGRRLRVE 123
G R+RVE
Sbjct: 73 --CGSRVRVE 80
>gi|448878298|gb|AGE46112.1| arginine/serine-rich splicing factor R2SZ35 transcript I [Sorghum
bicolor]
Length = 312
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G R DLE LF +YG++ V++K +AFI D DA+DA LD E
Sbjct: 13 LYVGRLAPRTRSRDLEYLFSKYGRIREVELKRDYAFIEFSDPHDADDAQYNLDGREV--D 70
Query: 117 GRRLRVEWTKHERGIRRPGGGS 138
G R+ VE+ K G+ R GGS
Sbjct: 71 GSRIIVEFAK---GVPRGSGGS 89
Score = 45.4 bits (106), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 153 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTD 212
L+V P TR+RDLE F YG+I V ++R++AF+++ DA A + ++
Sbjct: 13 LYVGRLAP-RTRSRDLEYLFSKYGRIREVELKRDYAFIEFSDPHDADDAQYNLDGREVDG 71
Query: 213 RVISVEYA 220
I VE+A
Sbjct: 72 SRIIVEFA 79
>gi|195624410|gb|ACG34035.1| splicing factor, arginine/serine-rich 6 [Zea mays]
gi|448878160|gb|AGE46043.1| arginine/serine-rich splicing factor RS2Z39 transcript I [Zea mays]
Length = 353
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G R DLE LF RYG++ V++K +AFI D RDA++A LD +
Sbjct: 13 LYVGRLATRTRSRDLEHLFGRYGRIREVELKRDYAFIEFSDHRDADEARYQLDGRDV--D 70
Query: 117 GRRLRVEWTKHERGIRRPGGGS 138
G R+ VE K G+ R GGS
Sbjct: 71 GSRIVVESAK---GVPRGSGGS 89
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%)
Query: 152 TLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLT 211
T + TR+RDLE F YG+I V ++R++AF+++ DA A + +
Sbjct: 11 TRLYVGRLATRTRSRDLEHLFGRYGRIREVELKRDYAFIEFSDHRDADEARYQLDGRDVD 70
Query: 212 DRVISVEYA 220
I VE A
Sbjct: 71 GSRIVVESA 79
>gi|297264540|ref|XP_001103237.2| PREDICTED: splicing factor, arginine/serine-rich 1-like [Macaca
mulatta]
Length = 300
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 7/73 (9%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAED + G D
Sbjct: 70 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDLRDAEDVVYGRDGY 129
Query: 112 EFGRKGRRLRVEW 124
++ G RLRVE+
Sbjct: 130 DY--YGYRLRVEF 140
>gi|145332797|ref|NP_001078264.1| putative Pre-mRNA splicing factor SF2 [Arabidopsis thaliana]
gi|332645021|gb|AEE78542.1| putative Pre-mRNA splicing factor SF2 [Arabidopsis thaliana]
Length = 297
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R I+ GN D R+ ++E +F +YG++ +++K + F+ + RDAEDAI+G
Sbjct: 7 RSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKG-- 64
Query: 110 RTEFGRKGRRLRVEWTKHERG 130
R + G RLRVE RG
Sbjct: 65 RDGYNLDGCRLRVELAHGGRG 85
>gi|270014159|gb|EFA10607.1| hypothetical protein TcasGA2_TC012868 [Tribolium castaneum]
Length = 424
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y + DLER FR YG++ V +K+G+ F+ DD RDA+DA+ L+ G+K
Sbjct: 6 VYVGGLPYGTTERDLERFFRGYGRMRDVLIKNGYGFVEFDDHRDADDAVYELN----GKK 61
Query: 117 --GRRLRVE 123
G R+ VE
Sbjct: 62 LLGERVTVE 70
>gi|28571689|ref|NP_788665.1| B52, isoform A [Drosophila melanogaster]
gi|28571699|ref|NP_788666.1| B52, isoform C [Drosophila melanogaster]
gi|386765710|ref|NP_788667.2| B52, isoform N [Drosophila melanogaster]
gi|21064205|gb|AAM29332.1| AT29232p [Drosophila melanogaster]
gi|23171192|gb|AAF54969.2| B52, isoform A [Drosophila melanogaster]
gi|23171193|gb|AAN13575.1| B52, isoform C [Drosophila melanogaster]
gi|25012274|gb|AAN71250.1| LD30815p [Drosophila melanogaster]
gi|27820026|gb|AAO25044.1| GM10155p [Drosophila melanogaster]
gi|220950988|gb|ACL88037.1| B52-PA [synthetic construct]
gi|220957884|gb|ACL91485.1| B52-PA [synthetic construct]
gi|383292690|gb|AAN13576.2| B52, isoform N [Drosophila melanogaster]
Length = 350
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y R+ DLER F+ YG+ + +K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 6 VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKEL--L 63
Query: 117 GRRLRVE 123
G R+ VE
Sbjct: 64 GERVVVE 70
>gi|327262671|ref|XP_003216147.1| PREDICTED: serine/arginine-rich splicing factor 7-like isoform 1
[Anolis carolinensis]
Length = 235
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMK---SGFAFIYMDDERDAEDAIRGLDRTEF 113
++ GN A + +LER F YG + V + GFAF+ +D RDAEDA+RGLD
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVI 72
Query: 114 GRKGRRLRVEWT 125
G R+RVE +
Sbjct: 73 --CGSRVRVELS 82
>gi|386765708|ref|NP_788671.2| B52, isoform M [Drosophila melanogaster]
gi|386765712|ref|NP_001014619.2| B52, isoform O [Drosophila melanogaster]
gi|312596948|gb|ADQ89797.1| GH20537p [Drosophila melanogaster]
gi|383292689|gb|AAN13579.2| B52, isoform M [Drosophila melanogaster]
gi|383292691|gb|AAX52949.2| B52, isoform O [Drosophila melanogaster]
Length = 355
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y R+ DLER F+ YG+ + +K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 6 VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKEL--L 63
Query: 117 GRRLRVE 123
G R+ VE
Sbjct: 64 GERVVVE 70
>gi|78099805|sp|P26686.4|SRR55_DROME RecName: Full=Serine-arginine protein 55; Short=SRP55; AltName:
Full=52 kDa bracketing protein; AltName: Full=B52
protein; AltName: Full=Protein enhancer of deformed
Length = 376
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y R+ DLER F+ YG+ + +K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 6 VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKEL--L 63
Query: 117 GRRLRVE 123
G R+ VE
Sbjct: 64 GERVVVE 70
>gi|62088696|dbj|BAD92795.1| splicing factor, arginine/serine-rich 1 (splicing factor 2,
alternate splicing factor) variant [Homo sapiens]
Length = 233
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ G D
Sbjct: 50 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 109
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN-----TRPSKTLFVINFDPYHTRTR 166
++ G RLRVE+ + RG R GGG +R S+ V++ P +
Sbjct: 110 DY--DGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 167
Query: 167 DLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
DL+ H G + + R+ V++ +ED T A+ + +K
Sbjct: 168 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 212
>gi|28571691|ref|NP_788668.1| B52, isoform B [Drosophila melanogaster]
gi|7299789|gb|AAF54968.1| B52, isoform B [Drosophila melanogaster]
Length = 329
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y R+ DLER F+ YG+ + +K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 6 VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKEL--L 63
Query: 117 GRRLRVE 123
G R+ VE
Sbjct: 64 GERVVVE 70
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 160 PYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
PY R RDLER F+ YG+ + I+ + FV++E DA A+ N +L + VE
Sbjct: 12 PYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVE 70
>gi|357441755|ref|XP_003591155.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
gi|355480203|gb|AES61406.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
Length = 316
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 83/192 (43%), Gaps = 34/192 (17%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R ++ GN D R ++E LF +YG + +D+K G+AF+ +D RDA+DAI D
Sbjct: 38 RTLYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIYYRD 97
Query: 110 RTEFGRKGRRLRVEWTKHERG-------IRRPGGGSSARRPSTNTRPSKTLFVINFDPYH 162
+F G RL VE RG R G S +R S R S ++ P
Sbjct: 98 GYDF--DGYRLLVELAHGGRGSSSSVDRYSRHSGRSGSRGVS---RRSDYRVLVTGLPPS 152
Query: 163 TRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 222
+DL+ H G + ++ R + T +D TN V+YA+R
Sbjct: 153 ASWQDLKDHMRKAGHVCFSQVFRE--------RGGLTGIVDYTNYDD-------VKYAIR 197
Query: 223 --DDDDRRNGHS 232
DD + RN S
Sbjct: 198 KLDDSEFRNAFS 209
>gi|195144342|ref|XP_002013155.1| GL23543 [Drosophila persimilis]
gi|194102098|gb|EDW24141.1| GL23543 [Drosophila persimilis]
Length = 358
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y R+ DLER F+ YG+ + +K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 6 VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKEL--L 63
Query: 117 GRRLRVE 123
G R+ VE
Sbjct: 64 GERVVVE 70
>gi|194741292|ref|XP_001953123.1| GF17608 [Drosophila ananassae]
gi|190626182|gb|EDV41706.1| GF17608 [Drosophila ananassae]
Length = 350
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y R+ DLER F+ YG+ + +K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 6 VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKEL--L 63
Query: 117 GRRLRVE 123
G R+ VE
Sbjct: 64 GERVVVE 70
>gi|8497|emb|CAA41556.1| SRp55 [Drosophila melanogaster]
Length = 350
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y R+ DLER F+ YG+ + +K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 6 VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKEL--L 63
Query: 117 GRRLRVE 123
G R+ VE
Sbjct: 64 GERVVVE 70
>gi|453080807|gb|EMF08857.1| hypothetical protein SEPMUDRAFT_151767 [Mycosphaerella populorum
SO2202]
Length = 815
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 69/158 (43%), Gaps = 25/158 (15%)
Query: 153 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTD 212
LFV N RD+ F PYG+I + I++ + FVQ+ ED TRAL+A ++ D
Sbjct: 397 LFVGNLSSEKVTKRDIFHVFHPYGEIAQISIKQAYGFVQFLRVEDCTRALNAEQGRQIRD 456
Query: 213 RVISVEYAVRDDDDRRNGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRR 272
+ I +E + + + P R + ++ +RR SP Y R
Sbjct: 457 KRIHLEVS----------------KPQKPPRDKLQN---HRRRSRSPAYDDRGRNDRRGR 497
Query: 273 ERGSP-----DYGRVRSPSPYRRDRGSPDYGRNSSRSP 305
R YG RSPSP +RG D R SRSP
Sbjct: 498 GRDGRDGGRNSYG-ARSPSPRDYNRGQDDRYRTRSRSP 534
>gi|195113427|ref|XP_002001269.1| GI22065 [Drosophila mojavensis]
gi|193917863|gb|EDW16730.1| GI22065 [Drosophila mojavensis]
Length = 361
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y R+ DLER F+ YG+ + +K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 6 VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKEL--L 63
Query: 117 GRRLRVE 123
G R+ VE
Sbjct: 64 GERVVVE 70
>gi|289740685|gb|ADD19090.1| serine-arginine protein 55 [Glossina morsitans morsitans]
Length = 351
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y R+ DLER F+ YG+ + +K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 6 VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKEL--L 63
Query: 117 GRRLRVE 123
G R+ VE
Sbjct: 64 GERVVVE 70
>gi|313233267|emb|CBY24382.1| unnamed protein product [Oikopleura dioica]
Length = 167
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 56 PIFCGNFEYDARQSDLERLFRRYGKVDRVDMK---SGFAFIYMDDERDAEDAIRGLDRTE 112
I+ GN +++LER F +YG+V V + +GFAF+ M +E +AEDA++ LD E
Sbjct: 20 KIYVGNLGDYGDKAELERAFSKYGEVISVWVARRPTGFAFVEMKEEDEAEDAVKSLDGRE 79
Query: 113 FGRKGRRLRVEWTKHER 129
G+R+RVE K R
Sbjct: 80 IC--GQRVRVEMRKSHR 94
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 7/90 (7%)
Query: 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRR---NFAFVQYEVQEDATRALDAT 205
+ ++V N Y + +LER F YG++ISV + R FAFV+ + +++A A+ +
Sbjct: 17 AASKIYVGNLGDYGDKA-ELERAFSKYGEVISVWVARRPTGFAFVEMKEEDEAEDAVKSL 75
Query: 206 NMSKLTDRVISVEYAVRDDDDRRNGHSPDR 235
+ ++ + + VE RR G++ DR
Sbjct: 76 DGREICGQRVRVEMR---KSHRRVGNADDR 102
>gi|313216549|emb|CBY37839.1| unnamed protein product [Oikopleura dioica]
gi|313217070|emb|CBY38254.1| unnamed protein product [Oikopleura dioica]
Length = 157
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 56 PIFCGNFEYDARQSDLERLFRRYGKVDRVDMK---SGFAFIYMDDERDAEDAIRGLDRTE 112
I+ GN +++LER F +YG+V V + +GFAF+ M +E +AEDA++ LD E
Sbjct: 10 KIYVGNLGDYGDKAELERAFSKYGEVISVWVARRPTGFAFVEMKEEDEAEDAVKSLDGRE 69
Query: 113 FGRKGRRLRVEWTKHER 129
G+R+RVE K R
Sbjct: 70 IC--GQRVRVEMRKSHR 84
Score = 38.1 bits (87), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRR---NFAFVQYEVQ---EDATRAL 202
+ ++V N Y + +LER F YG++ISV + R FAFV+ + + EDA ++L
Sbjct: 7 AASKIYVGNLGDYGDKA-ELERAFSKYGEVISVWVARRPTGFAFVEMKEEDEAEDAVKSL 65
Query: 203 DATNMS 208
D +
Sbjct: 66 DGREIC 71
>gi|198434010|ref|XP_002131854.1| PREDICTED: similar to Splicing factor, arginine/serine-rich 7
(Splicing factor 9G8) isoform 1 [Ciona intestinalis]
gi|198434012|ref|XP_002131856.1| PREDICTED: similar to Splicing factor, arginine/serine-rich 7
(Splicing factor 9G8) isoform 2 [Ciona intestinalis]
Length = 342
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDAEDAIRGLD 109
R ++ GN A + DLE F YG++D V + GFA++ +D RDA+DA+RGLD
Sbjct: 12 RKVYVGNLGTHASREDLEEEFSYYGRLDSVWVARNPPGFAYVLFEDARDAKDAVRGLD 69
Score = 41.6 bits (96), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 20/107 (18%)
Query: 151 KTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN---FAFVQYEVQEDATRALDATNM 207
+ ++V N + +R DLE F YG++ SV + RN FA+V +E DA A+ +
Sbjct: 12 RKVYVGNLGTHASRE-DLEEEFSYYGRLDSVWVARNPPGFAYVLFEDARDAKDAVRGLDG 70
Query: 208 SKLTDRVISVEYAVRDDDDRRNGHSPDRNRDRSPDRGRRRSPSPYRR 254
+ DR + V D + RS R RR P+PY R
Sbjct: 71 KIICDRKVRV----------------DISNSRSTGRPARRGPAPYDR 101
>gi|347972223|ref|XP_315232.3| AGAP004592-PA [Anopheles gambiae str. PEST]
gi|347972225|ref|XP_003436861.1| AGAP004592-PH [Anopheles gambiae str. PEST]
gi|333469344|gb|EAA10559.4| AGAP004592-PA [Anopheles gambiae str. PEST]
gi|333469351|gb|EGK97262.1| AGAP004592-PH [Anopheles gambiae str. PEST]
Length = 345
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 82/178 (46%), Gaps = 24/178 (13%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y R+ DLER F+ YG+ + +K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 6 VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKEL--L 63
Query: 117 GRRLRVEWTKHERGIRR-PGGGSSARRPSTNTR-------------PSKTLFVINFDPYH 162
G R+ VE RG R P G R + R P +T + + +
Sbjct: 64 GERVVVEPA---RGTARGPSGYRERDRYDRDRRGGRYDKNSSRYGPPLRTEYRLVVENLS 120
Query: 163 TRT--RDLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
TR +DL+ + G++ + + R+N V++ D A++ + ++L R I
Sbjct: 121 TRVSWQDLKDYMRQAGEVTYADAHKQRKNEGVVEFATLSDMKTAIEKLDDTELNGRRI 178
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 160 PYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
PY R RDLER F+ YG+ + I+ + FV++E DA A+ N +L + VE
Sbjct: 12 PYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVE 70
>gi|224123814|ref|XP_002330215.1| predicted protein [Populus trichocarpa]
gi|222871671|gb|EEF08802.1| predicted protein [Populus trichocarpa]
Length = 226
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R ++ GN D R ++E LF +YG + +D+K G+AF+ +D DA+ AIRGLD
Sbjct: 6 RTLYVGNLPGDIRVREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDAHDAKYAIRGLD 65
Query: 110 RTEFGRKGRRLRVEWT 125
F RLRVE
Sbjct: 66 GYNF--DACRLRVELA 79
>gi|198452967|ref|XP_001359013.2| GA10599 [Drosophila pseudoobscura pseudoobscura]
gi|198132156|gb|EAL28156.2| GA10599 [Drosophila pseudoobscura pseudoobscura]
Length = 357
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y R+ DLER F+ YG+ + +K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 6 VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKEL--L 63
Query: 117 GRRLRVE 123
G R+ VE
Sbjct: 64 GERVVVE 70
>gi|221057011|ref|XP_002259643.1| Splicing factor [Plasmodium knowlesi strain H]
gi|193809715|emb|CAQ40417.1| Splicing factor, putative [Plasmodium knowlesi strain H]
Length = 312
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 10/162 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMK-----SGFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D+E FR+YG + + D+K + FAFI +D RDA DAI+ D +
Sbjct: 10 IYVGNLPSHVSPRDVENEFRKYGNILKCDVKKTVSGAAFAFIEFEDARDAADAIKEKDGS 69
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFD--PYHTRTRDLE 169
++G G +LRVE + R + G R + +V+ P +DL+
Sbjct: 70 DYG--GNKLRVEVPFNARDNGKYGPRGGRGMMGRGMRSRRGRYVVEVSGLPLSGSWQDLK 127
Query: 170 RHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
H G+ + +N V + +ED A++ N S
Sbjct: 128 DHLREAGECGHADVFKNGIGEVSFFHKEDMLEAIEKFNGSTF 169
>gi|357441753|ref|XP_003591154.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
gi|355480202|gb|AES61405.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
Length = 322
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 83/192 (43%), Gaps = 34/192 (17%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R ++ GN D R ++E LF +YG + +D+K G+AF+ +D RDA+DAI D
Sbjct: 38 RTLYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIYYRD 97
Query: 110 RTEFGRKGRRLRVEWTKHERG-------IRRPGGGSSARRPSTNTRPSKTLFVINFDPYH 162
+F G RL VE RG R G S +R S R S ++ P
Sbjct: 98 GYDF--DGYRLLVELAHGGRGSSSSVDRYSRHSGRSGSRGVS---RRSDYRVLVTGLPPS 152
Query: 163 TRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 222
+DL+ H G + ++ R + T +D TN V+YA+R
Sbjct: 153 ASWQDLKDHMRKAGHVCFSQVFRE--------RGGLTGIVDYTNYDD-------VKYAIR 197
Query: 223 --DDDDRRNGHS 232
DD + RN S
Sbjct: 198 KLDDSEFRNAFS 209
>gi|218192579|gb|EEC75006.1| hypothetical protein OsI_11073 [Oryza sativa Indica Group]
Length = 294
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G R DLE LF RYG++ V++K +AFI D RDA++A LD +
Sbjct: 13 LYVGRLSSRTRSRDLEYLFGRYGRIREVELKRDYAFIEFSDTRDADEARYNLDGRDV--D 70
Query: 117 GRRLRVEWTKHERGIRRPGGGSS 139
G R+ VE+ K G+ R G S
Sbjct: 71 GSRILVEFAK---GVPRGAAGGS 90
>gi|198434018|ref|XP_002131881.1| PREDICTED: similar to Splicing factor, arginine/serine-rich 7
(Splicing factor 9G8) isoform 5 [Ciona intestinalis]
Length = 273
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDAEDAIRGLD 109
R ++ GN A + DLE F YG++D V + GFA++ +D RDA+DA+RGLD
Sbjct: 12 RKVYVGNLGTHASREDLEEEFSYYGRLDSVWVARNPPGFAYVLFEDARDAKDAVRGLD 69
>gi|195451842|ref|XP_002073099.1| GK13948 [Drosophila willistoni]
gi|194169184|gb|EDW84085.1| GK13948 [Drosophila willistoni]
Length = 362
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y R+ DLER F+ YG+ + +K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 6 VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKEL--L 63
Query: 117 GRRLRVE 123
G R+ VE
Sbjct: 64 GERVVVE 70
>gi|289739639|gb|ADD18567.1| arginine/serine-rich 6 splicing factor [Glossina morsitans
morsitans]
Length = 346
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y R+ DLER F+ YG+ + +K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 6 VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKEL--L 63
Query: 117 GRRLRVE 123
G R+ VE
Sbjct: 64 GERVVVE 70
>gi|198434014|ref|XP_002131863.1| PREDICTED: similar to Splicing factor, arginine/serine-rich 7
(Splicing factor 9G8) isoform 3 [Ciona intestinalis]
Length = 311
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDAEDAIRGLD 109
R ++ GN A + DLE F YG++D V + GFA++ +D RDA+DA+RGLD
Sbjct: 12 RKVYVGNLGTHASREDLEEEFSYYGRLDSVWVARNPPGFAYVLFEDARDAKDAVRGLD 69
>gi|198434016|ref|XP_002131866.1| PREDICTED: similar to Splicing factor, arginine/serine-rich 7
(Splicing factor 9G8) isoform 4 [Ciona intestinalis]
Length = 301
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDAEDAIRGLD 109
R ++ GN A + DLE F YG++D V + GFA++ +D RDA+DA+RGLD
Sbjct: 12 RKVYVGNLGTHASREDLEEEFSYYGRLDSVWVARNPPGFAYVLFEDARDAKDAVRGLD 69
>gi|195390405|ref|XP_002053859.1| GJ24113 [Drosophila virilis]
gi|194151945|gb|EDW67379.1| GJ24113 [Drosophila virilis]
Length = 347
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y R+ DLER F+ YG+ + +K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 6 VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKEL--L 63
Query: 117 GRRLRVE 123
G R+ VE
Sbjct: 64 GERVVVE 70
>gi|321460885|gb|EFX71923.1| hypothetical protein DAPPUDRAFT_59706 [Daphnia pulex]
Length = 255
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 98/249 (39%), Gaps = 47/249 (18%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS----GFAFIYMDDERDAEDAIRGLDRTE 112
I+ GN D R D+E LF ++GK+ +D+K+ FAF+ +D RDAEDA+ D +
Sbjct: 11 IYVGNLPPDIRTKDIEDLFYKFGKIAYIDLKNRRGPPFAFVEFEDPRDAEDAVHARDGYD 70
Query: 113 FGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN-----------------TRPSKTLFV 155
+ G RLRVE+ + + G R + +
Sbjct: 71 Y--DGYRLRVEFPRGSQNSGGGHSGGRGGDGGRGGGDGGGSNGGGRSRGPPARRTNYRVI 128
Query: 156 INFDPYHTRTRDLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKLTDRV 214
+ P +DL+ H G + ++ V++ ED A+ + S+
Sbjct: 129 VTGLPPTGSWQDLKDHMREAGDVCYADTYKDGTGMVEFLRYEDMKYAIKKLDDSRFRSHE 188
Query: 215 ISVEYA-VRDDDDRRNGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRE 273
V Y V++D NG + DR+R SP G ++ RGS
Sbjct: 189 GEVSYVRVKEDSGDGNGGTRDRSRSYSPAGGGGKT--------------RGS-------- 226
Query: 274 RGSPDYGRV 282
RGSP Y V
Sbjct: 227 RGSPSYSPV 235
>gi|320169942|gb|EFW46841.1| hypothetical protein CAOG_04799 [Capsaspora owczarzaki ATCC 30864]
Length = 313
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 38/66 (57%), Gaps = 10/66 (15%)
Query: 66 ARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKG 117
R++DLE F R+GKV R D+ GFAFI M++E A AIRG RTEF G
Sbjct: 69 TREADLESKFARFGKVVRCDVVRDPHTNDSRGFAFIGMENEEQAHAAIRGCHRTEF--DG 126
Query: 118 RRLRVE 123
R + VE
Sbjct: 127 RTISVE 132
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 62/129 (48%), Gaps = 21/129 (16%)
Query: 152 TLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN--------FAFVQYEVQEDATRALD 203
TL VI P TR DLE F +GK++ + R+ FAF+ E +E A A+
Sbjct: 59 TLCVIGLSPL-TREADLESKFARFGKVVRCDVVRDPHTNDSRGFAFIGMENEEQAHAAIR 117
Query: 204 ATNMSKLTDRVISVEYAVRDDDDRRNGHSPD-RNRDRSPDRGRRRSPSP-----YRRERG 257
+ ++ R ISVE V + +SP RN+ R R R RSP+P R+++G
Sbjct: 118 GCHRTEFDGRTISVEKLV---EMLNMMNSPLRRNQAR---RARPRSPTPGHYVGARQKQG 171
Query: 258 SPDYGRGSS 266
YG G S
Sbjct: 172 GGSYGNGPS 180
>gi|296004548|ref|XP_001351730.2| splicing factor, putative [Plasmodium falciparum 3D7]
gi|225631680|emb|CAD51537.2| splicing factor, putative [Plasmodium falciparum 3D7]
Length = 298
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMK-----SGFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D+E FR+YG + + D+K + FAFI +D RDA DAI+ D
Sbjct: 10 IYVGNLPSHVSSRDVENEFRKYGNILKCDVKKTVSGAAFAFIEFEDARDAADAIKEKDGC 69
Query: 112 EFGRKGRRLRVE 123
+F +G +LRVE
Sbjct: 70 DF--EGNKLRVE 79
>gi|346326093|gb|EGX95689.1| Nucleotide-binding, alpha-beta plait [Cordyceps militaris CM01]
Length = 332
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 12/169 (7%)
Query: 57 IFCGNFEYDARQSDLERLFRRY--GKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFG 114
++ GN +A ++D+E F + G++ V + GF FI D DA D + D ++F
Sbjct: 10 LYLGNLPPNATKADIEAHFATHGTGEITEVKLMHGFGFIEYKDPMDARDVVP--DGSDF- 66
Query: 115 RKGRRLRVEWTKHERGIRRPG-GGSSARRPSTNTRPSKTL--FVINFDPYHTRTRDLERH 171
KG RL V++ + R PG G A RP +T+ I P T +DL+
Sbjct: 67 -KGTRLTVQFARGPRPREPPGYGAGGAHHERAAPRPRRTIHRMTITGLPNETSWQDLKDF 125
Query: 172 FEPYG-KIISVRIRRNF--AFVQYEVQEDATRALDATNMSKLTDRVISV 217
G ++ R+ FV+YE D A++ + + +V+
Sbjct: 126 ARQAGPDVVYSETARDSGRGFVEYENANDLRTAVEKLDGFEFKGKVVQC 174
>gi|170045194|ref|XP_001850202.1| 52K active chromatin boundary protein [Culex quinquefasciatus]
gi|167868189|gb|EDS31572.1| 52K active chromatin boundary protein [Culex quinquefasciatus]
Length = 370
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y R+ DLER F+ YG+ + +K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 6 VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKEL--L 63
Query: 117 GRRLRVE 123
G R+ VE
Sbjct: 64 GERVVVE 70
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 160 PYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
PY R RDLER F+ YG+ + I+ + FV++E DA A+ N +L + VE
Sbjct: 12 PYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVE 70
>gi|306774101|ref|NP_001182415.1| serine/arginine-rich splicing factor 7 isoform 3 [Mus musculus]
Length = 227
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMK---SGFAFIYMDDERDAEDAIRGLDRTEF 113
++ GN A + +LER F YG + V + GFAF+ +D RDAEDA+RGLD
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVI 72
Query: 114 GRKGRRLRVEWT 125
G R+RVE +
Sbjct: 73 --CGSRVRVELS 82
>gi|302693014|ref|XP_003036186.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
gi|300109882|gb|EFJ01284.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
Length = 632
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 87/216 (40%), Gaps = 19/216 (8%)
Query: 40 RSHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-------GFAF 92
R Q I +A ++ N + + + E LFR G V ++ GF F
Sbjct: 212 RKERQSKIDEMKAQFTNLYIKNIDPEVTDEEFEALFREQGNVTSSVIQRDEEGRSRGFGF 271
Query: 93 IYMDDERDAEDAIRGLDRTEFGRKGRRLRVE--WTKHERGIRRPGGGSSARRPSTNTRPS 150
+ + +A+ A+ L+ +F GR+L V K ER AR +
Sbjct: 272 VNYETHEEAQKAVDNLNDKDF--HGRKLFVSRAQKKAEREEELRKAHEQARLEKLSKYQG 329
Query: 151 KTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN-------FAFVQYEVQEDATRALD 203
L+V N D L FEP+G I S ++ R+ F FV Y E+A++A+
Sbjct: 330 LNLYVKNLDD-DVDDEKLRAEFEPFGTITSAKVMRDDKGVSKGFGFVCYSSPEEASKAVA 388
Query: 204 ATNMSKLTDRVISVEYAVRDDDDRRNGHSPDRNRDR 239
N + + + V +A R + R+ S R++
Sbjct: 389 EMNNKMIGSKPLYVSHAQRREVRRQQLESQIAQRNQ 424
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 63/164 (38%), Gaps = 25/164 (15%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-------GFAFIYMDDERDAEDAIRGLD 109
IF N + L F +G V + + G+ F++ + AE+AI+ ++
Sbjct: 136 IFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGNSKGYGFVHYETAEAAENAIKNVN 195
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLE 169
K +V H R + TN L++ N DP T + E
Sbjct: 196 GMLLNDK----KVYVGHHISRKERQSKIDEMKAQFTN------LYIKNIDPEVT-DEEFE 244
Query: 170 RHFEPYGKIISVRIRRN-------FAFVQYEVQEDATRALDATN 206
F G + S I+R+ F FV YE E+A +A+D N
Sbjct: 245 ALFREQGNVTSSVIQRDEEGRSRGFGFVNYETHEEAQKAVDNLN 288
>gi|357621499|gb|EHJ73311.1| splicing factor arginine/serine-rich 6 [Danaus plexippus]
Length = 408
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G + R+ DLE+ F+ +G++ + +K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 6 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKEL--L 63
Query: 117 GRRLRVE 123
G R+ VE
Sbjct: 64 GERVVVE 70
>gi|393245425|gb|EJD52935.1| polyadenylate binding protein [Auricularia delicata TFB-10046 SS5]
Length = 665
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 78/199 (39%), Gaps = 19/199 (9%)
Query: 40 RSHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-------GFAF 92
R Q I +A I+ N + + Q E LF ++G + + GF F
Sbjct: 213 RKERQSKIDEMKAQYTNIYVKNLDPELGQEGFEELFGKFGNITSAALSKDEEGKSRGFGF 272
Query: 93 IYMDDERDAEDAIRGLDRTEFGRKGRRLRVE--WTKHERGIRRPGGGSSARRPSTNTRPS 150
+ + A A+ L TE GR+L V K ER +A++ +
Sbjct: 273 VNFESHEQAAAAVETLHDTEI--NGRKLYVARAQKKSEREDELRKSYENAKQEKLSKYQG 330
Query: 151 KTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN-------FAFVQYEVQEDATRALD 203
L++ N + L FEP+G I S ++ R+ F FV + ++AT+A+
Sbjct: 331 VNLYIKNLED-DIDDEKLRAEFEPFGTITSCKVMRDEKNTSKGFGFVCFSSPDEATKAVS 389
Query: 204 ATNMSKLTDRVISVEYAVR 222
N + + + V A R
Sbjct: 390 EMNNKMIGSKPLYVSLAQR 408
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 152 TLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN--------FAFVQYEVQEDATRALD 203
+L+V DP T E F G + S+R+ R+ +A+V Y D RALD
Sbjct: 48 SLYVGELDPSVTEAMLFEV-FNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALD 106
Query: 204 ATNMSKLTDRVISVEYAVRDDDDRRNGH 231
N S + +R + ++ RD R+ G
Sbjct: 107 QLNYSLIKNRACRIMWSQRDPALRKTGQ 134
>gi|348574612|ref|XP_003473084.1| PREDICTED: serine/arginine-rich splicing factor 7-like isoform 1
[Cavia porcellus]
Length = 235
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMK---SGFAFIYMDDERDAEDAIRGLDRTEF 113
++ GN A + +LER F YG + V + GFAF+ +D RDAEDA+RGLD
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVI 72
Query: 114 GRKGRRLRVEWT 125
G R+RVE +
Sbjct: 73 --CGSRVRVELS 82
>gi|341900148|gb|EGT56083.1| hypothetical protein CAEBREN_04295 [Caenorhabditis brenneri]
Length = 649
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 72/180 (40%), Gaps = 34/180 (18%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKV--------DRVDMKSGFAFIYMDDERDAEDAI 105
M ++ G+ D +S L F G V + + G+A++ DAE
Sbjct: 31 MASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAE--- 87
Query: 106 RGLDRTEF-GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTR 164
R +D F G+ +R+ W++ + +RR G G+ +F+ N D
Sbjct: 88 RAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGN--------------IFIKNLDKV-ID 132
Query: 165 TRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
+ + F +G I+S ++ + + FV +E +E A A+ N L + + V
Sbjct: 133 NKSIYDTFSLFGNILSCKVAIDEEGSSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 192
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 20/188 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS------GFAFIYMDDERDAEDAIRGLDR 110
++ NF + LE+LF +YG + D+ + GF F+ + +AE A++ L+
Sbjct: 215 VYVKNFGDHYNKESLEKLFAKYGTITSCDVMTSDGKSKGFGFVAFAEPEEAEAAVQALND 274
Query: 111 TEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSK----TLFVINFDPYHTRTR 166
+ +G L++ + ++ R R K L+V N D
Sbjct: 275 SPV--EGSDLKLHVCRAQKKSERHAELKKKHEQHKVERMQKYQGVNLYVKNLDE-SVDDE 331
Query: 167 DLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 219
L++ FE +G I S ++ + F FV +E E+AT A+ N + + + V
Sbjct: 332 ALKKQFESFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAVTEMNSKMVCSKPLYVAL 391
Query: 220 AVRDDDDR 227
A R +D R
Sbjct: 392 AQRKEDRR 399
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 61/133 (45%), Gaps = 13/133 (9%)
Query: 122 VEWTKHERGIRRPGGGSS--ARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKII 179
+E + PG G+ + P+ ++ +L+V + P + E+ F G ++
Sbjct: 1 MEMNAATPAVAVPGAGAPQPGQNPTGSSYTMASLYVGDLHPDVNESILFEK-FSAAGPVL 59
Query: 180 SVRIRRN--------FAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGH 231
S+R+ R+ +A+V ++ DA RA+D N L + + + ++ RD RR+G
Sbjct: 60 SIRVCRDNATRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGA 119
Query: 232 SP--DRNRDRSPD 242
+N D+ D
Sbjct: 120 GNIFIKNLDKVID 132
>gi|116309951|emb|CAH66982.1| H0714H04.9 [Oryza sativa Indica Group]
Length = 704
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 91/204 (44%), Gaps = 29/204 (14%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-------GFAFIYMDDERDAEDAIRG 107
+ +F GN Y+ Q +++ F+ G+V + + GF + AE A +
Sbjct: 446 KTLFVGNLPYNVEQEQVKQFFQEAGEVVDIRFSTFEDGNFRGFGHVEF---ATAEAAKKA 502
Query: 108 LDRTEFGRKGRRLRVEWTKHERGIRRPGGG---SSARRPSTNTRPSKTLFVINFDP---Y 161
L+ GR +R++ + ERG PG G SS ++P+ ++ T+F+ FD
Sbjct: 503 LELAGHDLMGRPVRLDLAR-ERGAYTPGSGRDNSSFKKPAQSS--GNTIFIKGFDTSLDI 559
Query: 162 HTRTRDLERHFEPYGKIISVRIRRNF--------AFVQYEVQEDATRALDATNMSKLTDR 213
H LE HF G+I V I R++ A++ + ++A + N S L
Sbjct: 560 HQIRNSLEEHFGSCGEITRVSIPRDYETGASKGMAYMDFADNGSLSKAYE-LNGSDLGGY 618
Query: 214 VISVEYA-VRDDDDRRNGHSPDRN 236
+ V+ A R D++R G S R+
Sbjct: 619 SLYVDEARPRPDNNREGGFSGGRD 642
>gi|380815574|gb|AFE79661.1| serine/arginine-rich splicing factor 7 isoform 1 [Macaca mulatta]
gi|383420741|gb|AFH33584.1| serine/arginine-rich splicing factor 7 isoform 1 [Macaca mulatta]
gi|384948776|gb|AFI37993.1| serine/arginine-rich splicing factor 7 isoform 1 [Macaca mulatta]
Length = 235
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMK---SGFAFIYMDDERDAEDAIRGLDRTEF 113
++ GN A + +LER F YG + V + GFAF+ +D RDAEDA+RGLD
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVI 72
Query: 114 GRKGRRLRVEWT 125
G R+RVE +
Sbjct: 73 --CGSRVRVELS 82
>gi|242089323|ref|XP_002440494.1| hypothetical protein SORBIDRAFT_09g001910 [Sorghum bicolor]
gi|241945779|gb|EES18924.1| hypothetical protein SORBIDRAFT_09g001910 [Sorghum bicolor]
gi|448878296|gb|AGE46111.1| arginine/serine-rich splicing factor RS2Z39 [Sorghum bicolor]
Length = 341
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G R DLE LF RYG++ V++K +AFI D RDA++A LD +
Sbjct: 13 LYVGRLAPRTRSRDLEYLFGRYGRIREVELKRDYAFIEFSDHRDADEARYQLDGRDV--D 70
Query: 117 GRRLRVEWTKHERGIRRPGGGS 138
G R+ VE+ K G+ R GGS
Sbjct: 71 GSRIVVEFAK---GVPRGPGGS 89
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 153 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTD 212
L+V P TR+RDLE F YG+I V ++R++AF+++ DA A + +
Sbjct: 13 LYVGRLAP-RTRSRDLEYLFGRYGRIREVELKRDYAFIEFSDHRDADEARYQLDGRDVDG 71
Query: 213 RVISVEYA 220
I VE+A
Sbjct: 72 SRIVVEFA 79
>gi|268566587|ref|XP_002639761.1| C. briggsae CBR-PAB-1 protein [Caenorhabditis briggsae]
Length = 651
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 72/180 (40%), Gaps = 34/180 (18%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKV--------DRVDMKSGFAFIYMDDERDAEDAI 105
M ++ G+ D +S L F G V + + G+A++ DAE
Sbjct: 31 MASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAE--- 87
Query: 106 RGLDRTEF-GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTR 164
R +D F G+ +R+ W++ + +RR G G+ +F+ N D
Sbjct: 88 RAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGN--------------IFIKNLDKV-ID 132
Query: 165 TRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
+ + F +G I+S ++ + + FV +E +E A A+ N L + + V
Sbjct: 133 NKSIYDTFSLFGNILSCKVAIDEEGSSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 192
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 20/188 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS------GFAFIYMDDERDAEDAIRGLDR 110
++ NF + LE+LF +YG + D+ + GF F+ + +AE A++ L+
Sbjct: 215 VYVKNFGEHYNKDTLEKLFAKYGTITSCDVMTSEGKSKGFGFVAFAEPEEAEAAVQALND 274
Query: 111 TEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSK----TLFVINFDPYHTRTR 166
+ +G L++ + ++ R R K L+V N D
Sbjct: 275 SPV--EGSDLKLHVCRAQKKSERHAELKKKHEQHKVERMQKYQGVNLYVKNLDE-SVDDE 331
Query: 167 DLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 219
L++ FE +G I S ++ + F FV +E E+AT A+ N + + + V
Sbjct: 332 ALKKQFESFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAVSEMNSKMVCSKPLYVAL 391
Query: 220 AVRDDDDR 227
A R +D R
Sbjct: 392 AQRKEDRR 399
Score = 38.1 bits (87), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 11/112 (9%)
Query: 141 RRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN--------FAFVQY 192
+ P+ ++ +L+V + P + E+ F G ++S+R+ R+ +A+V +
Sbjct: 22 QNPTGSSYTMASLYVGDLHPDVNESILFEK-FSAAGPVLSIRVCRDNATRLSLGYAYVNF 80
Query: 193 EVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRN--GHSPDRNRDRSPD 242
+ DA RA+D N L + + + ++ RD RR+ G+ +N D+ D
Sbjct: 81 QQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVID 132
>gi|348574614|ref|XP_003473085.1| PREDICTED: serine/arginine-rich splicing factor 7-like isoform 2
[Cavia porcellus]
Length = 227
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMK---SGFAFIYMDDERDAEDAIRGLDRTEF 113
++ GN A + +LER F YG + V + GFAF+ +D RDAEDA+RGLD
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVI 72
Query: 114 GRKGRRLRVEWT 125
G R+RVE +
Sbjct: 73 --CGSRVRVELS 82
>gi|255537535|ref|XP_002509834.1| Arginine/serine-rich-splicing factor, putative [Ricinus communis]
gi|223549733|gb|EEF51221.1| Arginine/serine-rich-splicing factor, putative [Ricinus communis]
Length = 204
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 63/162 (38%), Gaps = 50/162 (30%)
Query: 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI--------RRNFAFVQYEVQEDATR 200
P L+V T T DLE++F GK++ + R FAFV E EDA R
Sbjct: 45 PGNNLYVTGLSTRVT-TGDLEKYFGKEGKVLECHLVTDPRTRESRGFAFVTMETLEDAER 103
Query: 201 ALDATNMSKLTDRVISVEYAVRDDDDRRNGHSP--------------------------- 233
+ N S L R+I+VE A RR G +P
Sbjct: 104 CVKYLNRSVLEGRLITVEKA-----KRRRGRTPTPGRYHGLRERRGRGYRRSRSFSPRRW 158
Query: 234 -DRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRER 274
DRNRD +P R RS SPY R RG YRR R
Sbjct: 159 DDRNRDYNPRDRRGRSRSPYSR--------RGDDYDSYRRHR 192
>gi|115452341|ref|NP_001049771.1| Os03g0285900 [Oryza sativa Japonica Group]
gi|108707560|gb|ABF95355.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113548242|dbj|BAF11685.1| Os03g0285900 [Oryza sativa Japonica Group]
gi|222624706|gb|EEE58838.1| hypothetical protein OsJ_10413 [Oryza sativa Japonica Group]
Length = 330
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G R DLE LF RYG++ V++K +AFI D RDA++A LD +
Sbjct: 13 LYVGRLSSRTRSRDLEYLFGRYGRIREVELKRDYAFIEFSDPRDADEARYNLDGRDV--D 70
Query: 117 GRRLRVEWTKHERGIRRPGGGSS 139
G R+ VE+ K G+ R G S
Sbjct: 71 GSRILVEFAK---GVPRGAAGGS 90
Score = 42.0 bits (97), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 163 TRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
TR+RDLE F YG+I V ++R++AF+++ DA A + + I VE+A
Sbjct: 22 TRSRDLEYLFGRYGRIREVELKRDYAFIEFSDPRDADEARYNLDGRDVDGSRILVEFA 79
>gi|355565042|gb|EHH21531.1| hypothetical protein EGK_04623, partial [Macaca mulatta]
Length = 231
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 7/73 (9%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAED + G D
Sbjct: 48 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDLRDAEDVVYGRDGY 107
Query: 112 EFGRKGRRLRVEW 124
++ G RLRVE+
Sbjct: 108 DY--YGYRLRVEF 118
>gi|226491636|ref|NP_001143694.1| uncharacterized protein LOC100276428 [Zea mays]
gi|195620112|gb|ACG31886.1| splicing factor, arginine/serine-rich 6 [Zea mays]
gi|448878170|gb|AGE46048.1| arginine/serine-rich splicing factor RS2Z39 transcript VI [Zea
mays]
Length = 353
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ R DLE LF RYG++ V++K +AFI D RDA++A LD +
Sbjct: 13 LYVSRLATRTRSRDLEHLFGRYGRIREVELKRDYAFIEFSDHRDADEARYQLDGRDV--D 70
Query: 117 GRRLRVEWTKHERGIRRPGGGS 138
G R+ VE+ K G+ R GGS
Sbjct: 71 GSRIVVEFAK---GVPRGSGGS 89
Score = 44.7 bits (104), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 152 TLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLT 211
T ++ TR+RDLE F YG+I V ++R++AF+++ DA A + +
Sbjct: 11 TRLYVSRLATRTRSRDLEHLFGRYGRIREVELKRDYAFIEFSDHRDADEARYQLDGRDVD 70
Query: 212 DRVISVEYA 220
I VE+A
Sbjct: 71 GSRIVVEFA 79
>gi|299753075|ref|XP_001833047.2| hypothetical protein CC1G_01109 [Coprinopsis cinerea okayama7#130]
gi|298410132|gb|EAU88736.2| hypothetical protein CC1G_01109 [Coprinopsis cinerea okayama7#130]
Length = 279
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 13/168 (7%)
Query: 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 112
M R ++ G DAR D+ + F YG++ + +GF F+ + +DAEDA+ +
Sbjct: 1 MSRRLYLGRLPPDARSDDVSKFFEGYGRIIDCRVMTGFGFVEFESSKDAEDAVHQFNGKP 60
Query: 113 FGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHF 172
F G + VE+ K R R ARRP P L V T +DL+
Sbjct: 61 F--MGTAIVVEFAKESRPRREV--APRARRP-----PGVRLIVSGI-SRDTSWQDLKDFG 110
Query: 173 EPYGKIISVRIRRNF---AFVQYEVQEDATRALDATNMSKLTDRVISV 217
+ I R+ ++Y +EDA RA+ + +L +++ V
Sbjct: 111 REVASVSFADIDRDVPGQGVLEYLSREDADRAVKDLDGRELRGKLVRV 158
>gi|453083473|gb|EMF11519.1| hypothetical protein SEPMUDRAFT_150428 [Mycosphaerella populorum
SO2202]
Length = 359
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 71/166 (42%), Gaps = 21/166 (12%)
Query: 66 ARQSDLERLFRRYG--KVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 123
A ++D+E F +G ++ + + +GF FI D DA D + +EF G RL V+
Sbjct: 46 ATKADVENHFNTHGTGEITEIKLMNGFGFIEYKDAMDARDVVPAFHGSEF--MGERLVVQ 103
Query: 124 WTKHERGIRRPGGGSSARRPSTNTRPSKTL--FVINFDPYHTRTRDLERHFEPYG-KIIS 180
+ RG RP G +P RP +T+ I P+ T +DL+ G ++
Sbjct: 104 FA---RGSTRPREGFE-HQPRMAPRPRRTVHRMTITGLPFETSWQDLKDFARQSGLDVVY 159
Query: 181 VRIRRN-------FAFVQYEVQED---ATRALDATNMSKLTDRVIS 216
+ R FV+YE D A LD + T R IS
Sbjct: 160 SEVNRERDPAGTGKGFVEYETAADLASAVEKLDNSEFKGATVRCIS 205
>gi|195036928|ref|XP_001989920.1| GH18528 [Drosophila grimshawi]
gi|193894116|gb|EDV92982.1| GH18528 [Drosophila grimshawi]
Length = 360
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y R+ DLER F+ YG+ + +K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 6 VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKEL--L 63
Query: 117 GRRLRVE 123
G R+ VE
Sbjct: 64 GERVVVE 70
>gi|115460618|ref|NP_001053909.1| Os04g0620700 [Oryza sativa Japonica Group]
gi|75327488|sp|Q7XTT4.2|NUCL2_ORYSJ RecName: Full=Nucleolin 2; AltName: Full=Protein NUCLEOLIN LIKE 2
gi|38344339|emb|CAD41755.2| OSJNBa0058K23.21 [Oryza sativa Japonica Group]
gi|113565480|dbj|BAF15823.1| Os04g0620700 [Oryza sativa Japonica Group]
gi|215737156|dbj|BAG96085.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 707
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 91/204 (44%), Gaps = 29/204 (14%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-------GFAFIYMDDERDAEDAIRG 107
+ +F GN Y+ Q +++ F+ G+V + + GF + AE A +
Sbjct: 449 KTLFVGNLPYNVEQEQVKQFFQEAGEVVDIRFSTFEDGNFRGFGHVEF---ATAEAAKKA 505
Query: 108 LDRTEFGRKGRRLRVEWTKHERGIRRPGGG---SSARRPSTNTRPSKTLFVINFDP---Y 161
L+ GR +R++ + ERG PG G SS ++P+ ++ T+F+ FD
Sbjct: 506 LELAGHDLMGRPVRLDLAR-ERGAYTPGSGRDNSSFKKPAQSS--GNTIFIKGFDTSLDI 562
Query: 162 HTRTRDLERHFEPYGKIISVRIRRNF--------AFVQYEVQEDATRALDATNMSKLTDR 213
H LE HF G+I V I +++ A++ + ++A + N S L
Sbjct: 563 HQIRNSLEEHFGSCGEITRVSIPKDYETGASKGMAYMDFADNGSLSKAYE-LNGSDLGGY 621
Query: 214 VISVEYA-VRDDDDRRNGHSPDRN 236
+ V+ A R D++R G S R+
Sbjct: 622 SLYVDEARPRPDNNREGGFSGGRD 645
>gi|71028610|ref|XP_763948.1| splicing factor [Theileria parva strain Muguga]
gi|68350902|gb|EAN31665.1| splicing factor, putative [Theileria parva]
Length = 257
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMK-----SGFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D Q +LE F ++G++ ++K S FAFI D RDA DAIR D
Sbjct: 9 IYIGNLPEDCSQRELEEEFEKFGRIIYCELKKSYSGSPFAFIEFSDSRDARDAIRDKDGY 68
Query: 112 EFGRKGRRLRVE 123
EF G++LRVE
Sbjct: 69 EF--HGKKLRVE 78
>gi|403418011|emb|CCM04711.1| predicted protein [Fibroporia radiculosa]
Length = 328
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 14/164 (8%)
Query: 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 112
M R ++ G DAR D+ + F YG++ + +GF F+ + RDA+DA+R +
Sbjct: 1 MARRLYLGRLPPDARSEDVSKFFDGYGRIVDCRVMTGFGFVEFESSRDADDAVRDFNGKA 60
Query: 113 FGRKGRRLRVEWTKHE---RGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLE 169
F G + VE+ K R + P ARRP P L V T +DL+
Sbjct: 61 F--MGANIVVEFAKESRPRREVFEPERAPRARRP-----PGFRLVVSGI-SRDTSWQDLK 112
Query: 170 RHFEPYGKIISVRIRRNFA---FVQYEVQEDATRALDATNMSKL 210
G + I R+ A ++Y ++DA RA+ + L
Sbjct: 113 DFGREAGSVSYADIDRDAAGEGILEYLSRDDAERAVKELDGKDL 156
>gi|213408843|ref|XP_002175192.1| pre-mRNA-splicing factor srp1 [Schizosaccharomyces japonicus
yFS275]
gi|212003239|gb|EEB08899.1| pre-mRNA-splicing factor srp1 [Schizosaccharomyces japonicus
yFS275]
Length = 279
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 148 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI-------RRNFAFVQYEVQEDATR 200
R ++TL+V F P R RDL FEPYG +I I R FAFV+YE DA
Sbjct: 4 RSNRTLYVTGFRP-GMRARDLAYEFEPYGPLIRCDIPIPRNPEARPFAFVEYEDPRDAED 62
Query: 201 ALDATNMSKLTDRVISVEYAVRDDDDRRNGHSPDRNRDRSPDRGRRRSP----SPYRRER 256
A + ++ V+ VE+A + RR ++R R R RSP SPYRR
Sbjct: 63 AYHEVHGRRIDRDVLRVEWARQSFSSRREERRGRFGQERGRPRYRSRSPGRRLSPYRRSP 122
Query: 257 GSPDYG 262
G P YG
Sbjct: 123 G-PKYG 127
Score = 38.5 bits (88), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 13/82 (15%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDM-------KSGFAFIYMDDERDAEDAIRG 107
R ++ F R DL F YG + R D+ FAF+ +D RDAEDA
Sbjct: 7 RTLYVTGFRPGMRARDLAYEFEPYGPLIRCDIPIPRNPEARPFAFVEYEDPRDAEDAYHE 66
Query: 108 LDRTEFGRKGRR--LRVEWTKH 127
+ GR+ R LRVEW +
Sbjct: 67 V----HGRRIDRDVLRVEWARQ 84
>gi|12860555|dbj|BAB31986.1| unnamed protein product [Mus musculus]
Length = 190
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 11/143 (7%)
Query: 74 LFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHE 128
LF +YG++ +++K+ FAF+ +D RDAEDAI G + ++G+ RLRVE+ +
Sbjct: 2 LFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQC--RLRVEFPRTY 59
Query: 129 RGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN-F 187
G GG R TR S +++ P +DL+ H G + ++++
Sbjct: 60 GG---RGGWPRGARNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGM 116
Query: 188 AFVQYEVQEDATRALDATNMSKL 210
V+Y +ED AL + +K
Sbjct: 117 GMVEYLRKEDMEYALRKLDDTKF 139
>gi|343427687|emb|CBQ71214.1| related to Transformer-2 protein homolog [Sporisorium reilianum
SRZ2]
Length = 341
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 140 ARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQ 191
A R + ++ P L V T RDLE F YG I ++ R FAFV
Sbjct: 62 ADRDNGDSNPGNNLHVSGLS-KGTTDRDLEEAFGKYGPIQKAQVMYDPHSREPRGFAFVT 120
Query: 192 YEVQEDATRALDATNMSKLTDRVISVEYAVR 222
+E EDA A+ A N ++ R I+VE A R
Sbjct: 121 FEKAEDAEAAITAMNNTEFLGRKITVEKARR 151
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Query: 70 DLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 121
DLE F +YG + + + GFAF+ + DAE AI ++ TEF GR++
Sbjct: 88 DLEEAFGKYGPIQKAQVMYDPHSREPRGFAFVTFEKAEDAEAAITAMNNTEF--LGRKIT 145
Query: 122 VEWTKHER 129
VE + R
Sbjct: 146 VEKARRGR 153
>gi|68035567|gb|AAY84873.1| alternative splicing regulator [Triticum aestivum]
Length = 333
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G R DLE LF +YG++ V++K +AFI D RDA++A LD +
Sbjct: 13 LYVGRLSSRTRSRDLEYLFSKYGRIREVELKRDYAFIEYSDPRDADEARYNLDGRDV--D 70
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKT--LFVINFDPYHTR 164
G R+ VE+ K G+ R GGS R P T F D + R
Sbjct: 71 GSRIIVEFAK---GVPRGSGGSREREYVGRGPPPGTGRCFNCGIDGHWAR 117
Score = 44.7 bits (104), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 163 TRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
TR+RDLE F YG+I V ++R++AF++Y DA A + + I VE+A
Sbjct: 22 TRSRDLEYLFSKYGRIREVELKRDYAFIEYSDPRDADEARYNLDGRDVDGSRIIVEFA 79
>gi|47087630|ref|NP_998180.1| serine/arginine-rich splicing factor 1A [Danio rerio]
gi|33416587|gb|AAH55511.1| Splicing factor, arginine/serine-rich 1, like [Danio rerio]
Length = 245
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 7/73 (9%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ D
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGY 76
Query: 112 EFGRKGRRLRVEW 124
++ G RLRVE+
Sbjct: 77 DY--DGYRLRVEF 87
>gi|189217790|ref|NP_001121335.1| heterogeneous nuclear ribonucleoprotein R [Xenopus laevis]
gi|171847308|gb|AAI61702.1| LOC100158425 protein [Xenopus laevis]
Length = 511
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 12/140 (8%)
Query: 89 GFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTR 148
GF F+ +D + A A R L + G + VEW + P A+
Sbjct: 189 GFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEIMAK------- 238
Query: 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMS 208
K LFV N T LE+ F +GK+ V+ +++AFV ++ ++ A RA+D N +
Sbjct: 239 -VKVLFVRNLSSTVTE-EILEKAFSVFGKLERVKKLKDYAFVHFDERDAAVRAMDEMNGA 296
Query: 209 KLTDRVISVEYAVRDDDDRR 228
+L I + A D R+
Sbjct: 297 ELEGEEIEIVLAKPPDKKRK 316
>gi|449491291|ref|XP_004158852.1| PREDICTED: uncharacterized LOC101219220 [Cucumis sativus]
Length = 244
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Query: 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISV--------RIRRNFAFVQYEVQEDATR 200
P TL+V T RDLE HF GK+ S RI R FAFV + +DA R
Sbjct: 63 PGNTLYVTGLSTRVTE-RDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVDDANR 121
Query: 201 ALDATNMSKLTDRVISVE 218
+ N S L R I+VE
Sbjct: 122 CVKHLNQSILEGRYITVE 139
>gi|449434458|ref|XP_004135013.1| PREDICTED: uncharacterized RNA-binding protein C25G10.01-like,
partial [Cucumis sativus]
Length = 238
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Query: 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISV--------RIRRNFAFVQYEVQEDATR 200
P TL+V T RDLE HF GK+ S RI R FAFV + +DA R
Sbjct: 57 PGNTLYVTGLSTRVTE-RDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVDDANR 115
Query: 201 ALDATNMSKLTDRVISVE 218
+ N S L R I+VE
Sbjct: 116 CVKHLNQSILEGRYITVE 133
>gi|269849649|sp|Q7SXP4.2|SRS1A_DANRE RecName: Full=Serine/arginine-rich splicing factor 1A; AltName:
Full=Splicing factor, arginine/serine-rich 1; AltName:
Full=Splicing factor, arginine/serine-rich 1A
gi|157423199|gb|AAI53597.1| Sfrs1l protein [Danio rerio]
gi|157423322|gb|AAI53598.1| Sfrs1l protein [Danio rerio]
Length = 257
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 7/73 (9%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ D
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGY 76
Query: 112 EFGRKGRRLRVEW 124
++ G RLRVE+
Sbjct: 77 DY--DGYRLRVEF 87
>gi|359496147|ref|XP_003635162.1| PREDICTED: uncharacterized RNA-binding protein C25G10.01-like
[Vitis vinifera]
Length = 228
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 146 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISV--------RIRRNFAFVQYEVQED 197
+ P TL+V T R LE HF GK+ S RI R FAFV E ED
Sbjct: 54 TSNPGNTLYVTGLSTRVTE-RALEDHFSREGKVASCFLVMEPRTRISRGFAFVTMETVED 112
Query: 198 ATRALDATNMSKLTDRVISVE 218
A R + N S L R I+VE
Sbjct: 113 ANRCIKHLNQSVLEGRYITVE 133
>gi|224074996|ref|XP_002304510.1| predicted protein [Populus trichocarpa]
gi|222841942|gb|EEE79489.1| predicted protein [Populus trichocarpa]
Length = 208
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI--------RRNFAFVQYEVQEDATR 200
P L+V T + DLE++F GK++ + R FAFV E EDA R
Sbjct: 46 PGNNLYVTGLSTRVTSS-DLEKYFSSEGKVLECHLVTDPRTRESRGFAFVTMETVEDANR 104
Query: 201 ALDATNMSKLTDRVISVEYAVR 222
+ N S L RVI+VE A R
Sbjct: 105 CVKYLNRSVLEGRVITVEKAKR 126
>gi|1403024|emb|CAA90876.1| hnRNP protein [Chironomus tentans]
Length = 322
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 83/182 (45%), Gaps = 28/182 (15%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y R+ DLE+ F+ YG+ + +K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 6 VYVGGLPYGTRERDLEKFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKEL--L 63
Query: 117 GRRLRVEWTKHERGIRRPGG------------------GSSARRPSTNTRPSKTLFVINF 158
G R+ VE RG R G +S+R S P +T + +
Sbjct: 64 GERVVVEPA---RGTARGGSHRDRYDDRYGRRGRYDRYNNSSRSNSRYGPPLRTEYRLIV 120
Query: 159 DPYHTRT--RDLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDR 213
+ +R +DL+ + G++ + + RN V++ +D A++ + ++L R
Sbjct: 121 ENLSSRVSWQDLKDYMRQAGEVTYADAHKQNRNEGVVEFATLKDMKTAIEKLDDTELNGR 180
Query: 214 VI 215
I
Sbjct: 181 RI 182
>gi|115461779|ref|NP_001054489.1| Os05g0120100 [Oryza sativa Japonica Group]
gi|113578040|dbj|BAF16403.1| Os05g0120100 [Oryza sativa Japonica Group]
gi|222630005|gb|EEE62137.1| hypothetical protein OsJ_16924 [Oryza sativa Japonica Group]
Length = 323
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G R DLE F RYG++ V++K +AFI D RDAE+A LD +
Sbjct: 13 LYVGRLSSRTRSRDLEYHFSRYGRIREVELKRDYAFIEFSDPRDAEEARYNLDGRDV--D 70
Query: 117 GRRLRVEWTKHERGIRRPGGGS 138
G R+ VE+ K G+ R GGS
Sbjct: 71 GSRILVEFAK---GVPRGPGGS 89
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 163 TRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
TR+RDLE HF YG+I V ++R++AF+++ DA A + + I VE+A
Sbjct: 22 TRSRDLEYHFSRYGRIREVELKRDYAFIEFSDPRDAEEARYNLDGRDVDGSRILVEFA 79
>gi|449685942|ref|XP_002169071.2| PREDICTED: serine/arginine-rich splicing factor 10-like [Hydra
magnipapillata]
Length = 171
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 15/86 (17%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS--------GFAFIYMDDERDAEDAIRGL 108
+F N +D R DL R+F +YG + V + GFA++ D E DAEDA+ GL
Sbjct: 12 VFVRNVHHDVRSEDLRRIFEKYGDISDVYIPLDYYTREPRGFAYVQFDYEDDAEDAVDGL 71
Query: 109 D-RTEFGRKGRRLRVEWTKHERGIRR 133
D T FGR+ + K+ RG R+
Sbjct: 72 DGTTLFGRQ------IFCKNARGGRK 91
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 148 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI--------RRNFAFVQYEVQEDAT 199
R ++FV N + R+ DL R FE YG I V I R FA+VQ++ ++DA
Sbjct: 7 RTPTSVFVRNVH-HDVRSEDLRRIFEKYGDISDVYIPLDYYTREPRGFAYVQFDYEDDAE 65
Query: 200 RALDATNMSKLTDRVISVEYA 220
A+D + + L R I + A
Sbjct: 66 DAVDGLDGTTLFGRQIFCKNA 86
>gi|89272515|emb|CAJ81560.1| heterogeneous nuclear ribonucleoprotein R [Xenopus (Silurana)
tropicalis]
Length = 535
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 12/132 (9%)
Query: 89 GFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTR 148
GF F+ +D + A A R L + G + VEW + P A+
Sbjct: 192 GFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEIMAK------- 241
Query: 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMS 208
K LFV N T LE+ F +GK+ V+ +++AFV ++ ++ A RA+D N +
Sbjct: 242 -VKVLFVRNLSSTVTE-EILEKAFSVFGKLERVKKLKDYAFVHFDERDAAVRAMDEMNGT 299
Query: 209 KLTDRVISVEYA 220
+L I + A
Sbjct: 300 ELEGEEIEIVLA 311
>gi|301618964|ref|XP_002938875.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Xenopus
(Silurana) tropicalis]
Length = 532
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 12/132 (9%)
Query: 89 GFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTR 148
GF F+ +D + A A R L + G + VEW + P A+
Sbjct: 189 GFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADP---VEEPDPEIMAK------- 238
Query: 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMS 208
K LFV N T LE+ F +GK+ V+ +++AFV ++ ++ A RA+D N +
Sbjct: 239 -VKVLFVRNLSSTVTE-EILEKAFSVFGKLERVKKLKDYAFVHFDERDAAVRAMDEMNGT 296
Query: 209 KLTDRVISVEYA 220
+L I + A
Sbjct: 297 ELEGEEIEIVLA 308
>gi|388516667|gb|AFK46395.1| unknown [Lotus japonicus]
Length = 268
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 152 TLFVINFDPYHTRTRDLERHFEPYGKIISV--------RIRRNFAFVQYEVQEDATRALD 203
TL+V T RDLE HF GK+ S RI R FAF+ + EDA R +
Sbjct: 92 TLYVTGLSSRVTE-RDLEEHFAKEGKVASCFLVVEPRTRISRGFAFITMDTVEDANRCVK 150
Query: 204 ATNMSKLTDRVISVE 218
N S L R I+VE
Sbjct: 151 YLNQSVLEGRYITVE 165
>gi|125591671|gb|EAZ32021.1| hypothetical protein OsJ_16200 [Oryza sativa Japonica Group]
Length = 728
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 91/204 (44%), Gaps = 29/204 (14%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-------GFAFIYMDDERDAEDAIRG 107
+ +F GN Y+ Q +++ F+ G+V + + GF + AE A +
Sbjct: 470 KTLFVGNLPYNVEQEQVKQFFQEAGEVVDIRFSTFEDGNFRGFGHVEF---ATAEAAKKA 526
Query: 108 LDRTEFGRKGRRLRVEWTKHERGIRRPGGG---SSARRPSTNTRPSKTLFVINFDP---Y 161
L+ GR +R++ + ERG PG G SS ++P+ ++ T+F+ FD
Sbjct: 527 LELAGHDLMGRPVRLDLAR-ERGAYTPGSGRDNSSFKKPAQSS--GNTIFIKGFDTSLDI 583
Query: 162 HTRTRDLERHFEPYGKIISVRIRRNF--------AFVQYEVQEDATRALDATNMSKLTDR 213
H LE HF G+I V I +++ A++ + ++A + N S L
Sbjct: 584 HQIRNSLEEHFGSCGEITRVSIPKDYETGASKGMAYMDFADNGSLSKAYE-LNGSDLGGY 642
Query: 214 VISVEYA-VRDDDDRRNGHSPDRN 236
+ V+ A R D++R G S R+
Sbjct: 643 SLYVDEARPRPDNNREGGFSGGRD 666
>gi|242767232|ref|XP_002341329.1| RNA-binding protein (Nab3), putative [Talaromyces stipitatus ATCC
10500]
gi|218724525|gb|EED23942.1| RNA-binding protein (Nab3), putative [Talaromyces stipitatus ATCC
10500]
Length = 859
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 58/142 (40%), Gaps = 15/142 (10%)
Query: 153 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTD 212
LFV N RDL F YGK+ + I++ + F+Q+ + RAL A +
Sbjct: 368 LFVGNLPSERVTKRDLFHVFHKYGKLAQISIKQAYGFIQFLDADSCHRALQAEQGGVVRG 427
Query: 213 RVISVEYAVRDDDDRRNGHSPDRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRR 272
R I +E + R + P+ R S RR R PDY RG +
Sbjct: 428 RKIHLEISKPQKSTRPGANHPESARQ-----------SLTRRSRSPPDYTRGGPSN---- 472
Query: 273 ERGSPDYGRVRSPSPYRRDRGS 294
RG+ + G R PY RGS
Sbjct: 473 SRGARNQGSDRHDRPYETKRGS 494
>gi|328770674|gb|EGF80715.1| hypothetical protein BATDEDRAFT_88044 [Batrachochytrium
dendrobatidis JAM81]
Length = 211
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGL 108
+F F D L LF + GK R D S FAF+ D +DA+DA L
Sbjct: 6 LFVRGFSPDTSTVTLSSLFEKIGKTIRCDFPNRRGPHGASSFAFVEYKDPQDAQDAFDSL 65
Query: 109 DRTEFGRKGRRLRVEWTKHERGIRRPGGGS 138
+ E G+ L +EW K RRPGG S
Sbjct: 66 NGKEV--DGKSLVIEWAKTPLSDRRPGGSS 93
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 152 TLFVINFDPYHTRTRDLERHFEPYGKIISVRI--RR------NFAFVQYEVQEDATRALD 203
TLFV F P T T L FE GK I RR +FAFV+Y+ +DA A D
Sbjct: 5 TLFVRGFSP-DTSTVTLSSLFEKIGKTIRCDFPNRRGPHGASSFAFVEYKDPQDAQDAFD 63
Query: 204 ATNMSKLTDRVISVEYAVRDDDDRRNGHS 232
+ N ++ + + +E+A DRR G S
Sbjct: 64 SLNGKEVDGKSLVIEWAKTPLSDRRPGGS 92
>gi|125550625|gb|EAY96334.1| hypothetical protein OsI_18237 [Oryza sativa Indica Group]
Length = 331
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G R DLE F RYG++ V++K +AFI D RDAE+A LD +
Sbjct: 21 LYVGRLSSRTRSRDLEYHFSRYGRIREVELKRDYAFIEFSDPRDAEEARYNLDGRDV--D 78
Query: 117 GRRLRVEWTKHERGIRRPGGGS 138
G R+ VE+ K G+ R GGS
Sbjct: 79 GSRILVEFAK---GVPRGPGGS 97
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 163 TRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
TR+RDLE HF YG+I V ++R++AF+++ DA A + + I VE+A
Sbjct: 30 TRSRDLEYHFSRYGRIREVELKRDYAFIEFSDPRDAEEARYNLDGRDVDGSRILVEFA 87
>gi|281210715|gb|EFA84881.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 542
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 56 PIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SG--FAFIYMDDERDAEDAIRGLDRT 111
++ G + DL+ LF YG + R D+K SG FAFI + RDA+DA++ L+
Sbjct: 2 SLYIGGLTAETNARDLDNLFSVYGTIQRNDIKKTSGRCFAFIEFKERRDADDALKALNGA 61
Query: 112 EFGRKGRRLRVEWTK 126
+ G ++ VEW+K
Sbjct: 62 KL--LGSKITVEWSK 74
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 163 TRTRDLERHFEPYGKIISVRIR----RNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
T RDL+ F YG I I+ R FAF++++ + DA AL A N +KL I+VE
Sbjct: 12 TNARDLDNLFSVYGTIQRNDIKKTSGRCFAFIEFKERRDADDALKALNGAKLLGSKITVE 71
Query: 219 YA 220
++
Sbjct: 72 WS 73
>gi|388856974|emb|CCF49394.1| related to pre-mrna splicing factor srp55 [Ustilago hordei]
Length = 259
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 112
M ++ G D R+ D+E LFR YG++ V + F F+ + RDAEDA++ D
Sbjct: 1 MSTRVYVGKLPADVRRGDIEDLFRDYGRLYDVRIMGTFGFVEFEHHRDAEDAVKDFDGKN 60
Query: 113 FGRKGRRLRVEWTKH 127
F G R+ V+ K
Sbjct: 61 F--MGERIVVQHAKQ 73
>gi|294898606|ref|XP_002776298.1| splice factor, putative [Perkinsus marinus ATCC 50983]
gi|239883208|gb|EER08114.1| splice factor, putative [Perkinsus marinus ATCC 50983]
Length = 358
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG--FAFIYMDDERDAEDAIRGLDRTEFG 114
++ GN + D+ F RYG+V R + SG F+ DDERDAEDA RG+
Sbjct: 23 LYVGNISSRTTERDITEEFGRYGRVIRCYIPSGKNICFVEYDDERDAEDAYRGMASARVD 82
Query: 115 RKGRRLRVEWTK 126
G L ++W K
Sbjct: 83 --GNTLNLQWAK 92
>gi|239606902|gb|EEQ83889.1| pre-RNA splicing factor Srp2 [Ajellomyces dermatitidis ER-3]
gi|327351368|gb|EGE80225.1| RNA recognition domain-containing protein containing protein
[Ajellomyces dermatitidis ATCC 18188]
Length = 299
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 89/202 (44%), Gaps = 18/202 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRY---GKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
++ GN + + ++E F + GK+ + + SGF FI +D DA+D + D T+F
Sbjct: 9 LYLGNLPRNVTKQEIEDHFNSHHGSGKITEIKLMSGFGFIEYEDAMDAKDVV--PDGTDF 66
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPY-HTRTRDLERHF 172
KG RL V++ RG R S S+ RP +T++ + T +DL+
Sbjct: 67 --KGERLTVQFA---RGPRHKETFSGPSDRSSAPRPRRTIYRMQISGLPETSWQDLKDFA 121
Query: 173 EPYGK--IISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNG 230
G + S FV++E D A++ + + + ++ +DR+
Sbjct: 122 RQSGLDVVYSETGHDGRGFVEFETGSDLKTAVEKLDGREFKGSRVLCTQDIQSLEDRQ-- 179
Query: 231 HSPDRNRDRSPDRGRRRSPSPY 252
S D R RSP GRR PY
Sbjct: 180 -SRDPYRSRSP--GRRGGYHPY 198
>gi|45387765|ref|NP_991236.1| splicing factor, arginine/serine-rich 7 [Danio rerio]
gi|41350982|gb|AAH65586.1| Zgc:77155 [Danio rerio]
Length = 258
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDAEDAIRGLDRTEF 113
++ G+ A + +LER F YG + V + GFAF+ +D RDAEDA++G+D
Sbjct: 16 VYVGDLGNGAAKGELERAFSYYGPLRSVWVARNPPGFAFVEYEDARDAEDAVKGMDGKVL 75
Query: 114 GRKGRRLRVEWT 125
G R+RVE +
Sbjct: 76 C--GARVRVELS 85
>gi|351726252|ref|NP_001237888.1| uncharacterized protein LOC100500170 [Glycine max]
gi|255629542|gb|ACU15118.1| unknown [Glycine max]
Length = 238
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 54/131 (41%), Gaps = 28/131 (21%)
Query: 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISV--------RIRRNFAFVQYEVQEDATR 200
P TL+V T RDLE HF GK+ S RI R FAFV E EDA R
Sbjct: 69 PGDTLYVTGLSSRVTE-RDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMESAEDAER 127
Query: 201 ALDATNMSKLTDRVISVEYAVRDDDDRRNGHSPDRNRDRSPDRGRRRSPSPYRRERGSPD 260
+ N S L R I++E + R R R+P +P Y + + +
Sbjct: 128 CIKYLNQSVLEGRYITIERS-------------RRKRARTP------TPGHYLGLKNTRE 168
Query: 261 YGRGSSRSPYR 271
YG R YR
Sbjct: 169 YGFRGERGRYR 179
>gi|432889402|ref|XP_004075259.1| PREDICTED: uncharacterized protein LOC101155211 [Oryzias latipes]
Length = 251
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDAEDAIRGLDRTEF 113
++ G+ A + +LER F YG + V + GFAF+ +D RDAEDA++G+D
Sbjct: 18 VYVGDLGNGAAKGELERAFSYYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVKGMDGKLL 77
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARR 142
G R+RVE + G+ R G G +RR
Sbjct: 78 C--GSRVRVEMST---GLSRKGRGRLSRR 101
>gi|294463259|gb|ADE77165.1| unknown [Picea sitchensis]
Length = 102
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/92 (53%), Positives = 52/92 (56%), Gaps = 21/92 (22%)
Query: 207 MSKLTDRVISVEYAVRDDDDRRNGHSPDRNRDRSPDR----GRRRSPSPYRRERGSPDYG 262
MSKL DRVISVEYA+RDDDD RNG SP R G+R SP+ Y R SP YG
Sbjct: 1 MSKLLDRVISVEYAIRDDDD-RNGQR------ESPGRRGGYGKRVSPA-YDRSV-SPIYG 51
Query: 263 RGSSRSPYRRERGSPDYGRVRSPSPYRRDRGS 294
R R SPDYGR SP Y R RGS
Sbjct: 52 RQGRRP-------SPDYGRAPSPI-YERYRGS 75
>gi|449451689|ref|XP_004143594.1| PREDICTED: serine/arginine-rich splicing factor RS2Z32-like isoform
1 [Cucumis sativus]
gi|449451691|ref|XP_004143595.1| PREDICTED: serine/arginine-rich splicing factor RS2Z32-like isoform
2 [Cucumis sativus]
gi|449507559|ref|XP_004163066.1| PREDICTED: serine/arginine-rich splicing factor RS2Z32-like isoform
1 [Cucumis sativus]
gi|449507562|ref|XP_004163067.1| PREDICTED: serine/arginine-rich splicing factor RS2Z32-like isoform
2 [Cucumis sativus]
Length = 309
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G R DL+ LF RYG+V VDMK +AF+ D RDA+DA L+ +
Sbjct: 13 LYVGRLSSRTRSRDLDDLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYSLNGRDV--H 70
Query: 117 GRRLRVEWTKHERGIRRPGGGS 138
G R+ VE K G+ R GGS
Sbjct: 71 GSRIIVEIAK---GVPRGPGGS 89
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 163 TRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
TR+RDL+ F YG++ V ++R++AFV++ DA A + N + I VE A
Sbjct: 22 TRSRDLDDLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYSLNGRDVHGSRIIVEIA 79
>gi|158828228|gb|ABW81106.1| putRNAbp29 [Cleome spinosa]
Length = 338
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI--------RRNFAFVQYEVQEDATR 200
P +L+V + RDLE HF GK++ V + R F FV E EDA R
Sbjct: 42 PGNSLYVTGLS-HRVTKRDLEDHFSKEGKVVDVNLVLDPWTRESRGFGFVTMENMEDANR 100
Query: 201 ALDATNMSKLTDRVISVEYA 220
+ + S L R+I+VE A
Sbjct: 101 CIKYLDRSVLEGRIITVEKA 120
>gi|313227227|emb|CBY22374.1| unnamed protein product [Oikopleura dioica]
Length = 263
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G AR SD+E F+ +G + +++K G+ F+ +D+RDAE+A R LD
Sbjct: 8 LYIGYLPNQARMSDVEEFFKGFGHIKSINLKPGYGFVVFEDKRDAEEAARDLDGKRMC-- 65
Query: 117 GRRLRVEWTK 126
G ++ VE K
Sbjct: 66 GEKVDVEMAK 75
>gi|341883809|gb|EGT39744.1| hypothetical protein CAEBREN_05859 [Caenorhabditis brenneri]
Length = 467
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 20/188 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS------GFAFIYMDDERDAEDAIRGLDR 110
++ NF + LE+LF +YG + D+ + GF F+ + +AE A++ L+
Sbjct: 33 VYVKNFGDHYNKESLEKLFAKYGTITSCDVMTSDGKSKGFGFVAFAEPEEAEAAVQALND 92
Query: 111 TEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSK----TLFVINFDPYHTRTR 166
+ +G L++ + ++ R R K L+V N D
Sbjct: 93 SPV--EGSDLKLHVCRAQKKSERHAELKKKHEQHKVERMQKYQGVNLYVKNLDE-SVDDE 149
Query: 167 DLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 219
L++ FE +G I S ++ + F FV +E E+AT A+ N + + + V
Sbjct: 150 ALKKQFESFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAVTEMNSKMVCSKPLYVAL 209
Query: 220 AVRDDDDR 227
A R +D R
Sbjct: 210 AQRKEDRR 217
>gi|223944069|gb|ACN26118.1| unknown [Zea mays]
gi|413956219|gb|AFW88868.1| hypothetical protein ZEAMMB73_204329 [Zea mays]
Length = 315
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 100/253 (39%), Gaps = 58/253 (22%)
Query: 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI--------RRNFAFVQYEVQEDATR 200
P L+V T RDLE+HF G++I + R F FV +DA R
Sbjct: 38 PGNNLYVTGLSARVT-DRDLEKHFSTEGEVIDASVVYDPWTRESRGFGFVTMAAVKDADR 96
Query: 201 ALDATNMSKLTDRVISVEYAVRDDDDRRNGHSPD--RNRDRSPDRGRRRSPSPYRRERGS 258
+ + S L RVI+VE A RR G +P + RGRR S S S
Sbjct: 97 CIKYLDRSVLQGRVITVEKA-----KRRRGRTPTPGKYLGTKSSRGRRYSTSY------S 145
Query: 259 PDY-GRGSSR-SPYRRERGSPDYGRVRSPSPYRRDRGSPDYGRNSSRSPY---------- 306
PD GR SSR SP RR+ +GR RS SPY R R YGR+ S SPY
Sbjct: 146 PDRRGRYSSRYSPDRRD----CHGRDRSYSPYDRRRSYSPYGRDESYSPYYGRRSYSPYY 201
Query: 307 -----KKERAAIGHGRGPSRSPYRR-------------DRGSPENGHGSSPSPYRKGK-- 346
+ R PS SPY R + + S SP R
Sbjct: 202 SRRYRSRSPYCYRRRRSPSVSPYYRRHRYRSVSKSSSSSPRARGRSYSCSLSPQRSYSRS 261
Query: 347 PSPNNGRGPSRSP 359
SP + R S SP
Sbjct: 262 HSPESERSTSYSP 274
>gi|452820199|gb|EME27245.1| splice factor, putative isoform 2 [Galdieria sulphuraria]
Length = 422
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGL 108
+F GN + +L+ LF +YGK R+D+K GF F+ D+E +A+DA+ L
Sbjct: 3 LFVGNVSSSVSKRELQDLFEKYGKC-RIDLKRGFMFVDYDEEAEAKDALESL 53
>gi|336367304|gb|EGN95649.1| hypothetical protein SERLA73DRAFT_186792 [Serpula lacrymans var.
lacrymans S7.3]
gi|336380022|gb|EGO21176.1| hypothetical protein SERLADRAFT_441550 [Serpula lacrymans var.
lacrymans S7.9]
Length = 324
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 83/203 (40%), Gaps = 34/203 (16%)
Query: 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------------------SGFAF 92
M R ++ G DAR D+ + F YG++ VD + SGF F
Sbjct: 1 MARRLYLGRLPPDARSDDVAKFFDGYGRI--VDCRVMTGSSDKRRSANPGLTAPSSGFGF 58
Query: 93 IYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRR--PGGGSSARRPSTNTRPS 150
+ ++ +DAEDA+ + F G + VE+ K R R GGG + + RP
Sbjct: 59 VEFENSKDAEDAVHHFNGKPF--MGVNIVVEFAKESRPRRDVYEGGGERGFGSARSRRPP 116
Query: 151 KTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNF---AFVQYEVQEDATRALDATNM 207
+++ T +DL+ G + I R+F ++Y ++DA RA+ +
Sbjct: 117 GIRLIVSGISRDTSWQDLKDFGREAGSVSFADIDRDFPGQGILEYLSRDDADRAVKDLDG 176
Query: 208 SKLTDRVISVEYAVRDDDDRRNG 230
L R + V DD R G
Sbjct: 177 KDLRGRPVRVAL-----DDSRGG 194
>gi|255579604|ref|XP_002530643.1| Arginine/serine-rich-splicing factor, putative [Ricinus communis]
gi|223529816|gb|EEF31751.1| Arginine/serine-rich-splicing factor, putative [Ricinus communis]
Length = 248
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISV--------RIRRNFAFVQYEVQEDATR 200
P TL+V T R LE HF GK+ S RI R FAFV + EDA R
Sbjct: 72 PGNTLYVTGLSTRVTE-RGLEEHFAKEGKVASCFLVVEPRTRISRGFAFVTMDNVEDANR 130
Query: 201 ALDATNMSKLTDRVISVE 218
+ N S L R I+VE
Sbjct: 131 CVKYLNQSVLEGRYITVE 148
>gi|336465804|gb|EGO53969.1| hypothetical protein NEUTE1DRAFT_118022 [Neurospora tetrasperma
FGSC 2508]
gi|350287365|gb|EGZ68612.1| hypothetical protein NEUTE2DRAFT_146011 [Neurospora tetrasperma
FGSC 2509]
Length = 315
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 113/275 (41%), Gaps = 45/275 (16%)
Query: 57 IFCGNFEYDARQSDLERLFRRYG--KVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFG 114
++ GN A ++D+E F +G ++ + + +GF FI D DA D + ++F
Sbjct: 9 LYLGNLPRHATKADVEAHFATHGTGEITEIKLMNGFGFIEYKDAMDARDVVPAFHGSDF- 67
Query: 115 RKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKT--LFVINFDPYHTRTRDLERHF 172
G RL V++ + R R GG ++ RP +T I+ P T +DL+
Sbjct: 68 -MGERLTVQFARGAR--HREGGPGFTHERNSQPRPRRTPHRMQISGLPNETSWQDLKDFA 124
Query: 173 EPYGKII----SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRR 228
G + + R + FV++E D A++ + + + ++ A D R
Sbjct: 125 RQSGLDVVYSETTRNQNGEGFVEFENAADLRTAVEKLDNREFKGQRVTC-VANTQPDIPR 183
Query: 229 NGHSPDRNRDRSPDRGR----------RRSPSP---------YR---RERGSP------D 260
N H R R RSP RGR RR P P YR R+R P D
Sbjct: 184 NDH---RARSRSP-RGRPYPPPMDDYDRRGPPPRGYSPRRDGYRDGYRDRSPPPRREYYD 239
Query: 261 YGRGSSRSPYRRERGSPDYGRVRSPSPYRRDRGSP 295
RG RSP RR G R R PYR R P
Sbjct: 240 DRRGGYRSPPRRPIGDYPPPRGRYDDPYRAPRDYP 274
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 147 TRPSKTLFVINFDPYHTRTRDLERHFEPY--GKIISVRIRRNFAFVQYEVQEDATRALDA 204
T S T + P H D+E HF + G+I +++ F F++Y+ DA + A
Sbjct: 2 TEVSSTRLYLGNLPRHATKADVEAHFATHGTGEITEIKLMNGFGFIEYKDAMDARDVVPA 61
Query: 205 TNMSKLTDRVISVEYA 220
+ S ++V++A
Sbjct: 62 FHGSDFMGERLTVQFA 77
>gi|312371045|gb|EFR19313.1| hypothetical protein AND_22699 [Anopheles darlingi]
Length = 225
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 42/74 (56%), Gaps = 9/74 (12%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDAEDAIRGLDRTEF 113
++ G +A + D+E F YG + V + GFAF+ +D RDAEDA+RGLD
Sbjct: 10 VYVGELGNNASKQDIEEAFGYYGPLRNVWVARNPPGFAFVEFEDARDAEDAVRGLD---- 65
Query: 114 GRK--GRRLRVEWT 125
GR GRR RVE +
Sbjct: 66 GRTISGRRARVELS 79
>gi|298707093|emb|CBJ29885.1| splicing factor, arginine/serine-rich 2 (SC-35), isoform CRA_a
[Ectocarpus siliculosus]
Length = 289
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRV----DMKSG----FAFIYMDDERDAEDAI 105
M + N Y++ DL R+F +YG++ V D+++G FAF+ D+RDA+DAI
Sbjct: 26 MVTLKVDNVPYNSSIDDLRRIFEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAI 85
Query: 106 RGLDRTEFGRKGRRLRVEWTKHER 129
+D F GR LR+++ K R
Sbjct: 86 DRMDGEFF--AGRELRIQYAKKRR 107
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 146 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN--------FAFVQYEVQED 197
N TL V N PY++ DL R FE YG++ V + R+ FAFV++ Q D
Sbjct: 22 NIEGMVTLKVDNV-PYNSSIDDLRRIFEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRD 80
Query: 198 ATRALDATNMSKLTDRVISVEYA 220
A A+D + R + ++YA
Sbjct: 81 ADDAIDRMDGEFFAGRELRIQYA 103
>gi|390597697|gb|EIN07096.1| hypothetical protein PUNSTDRAFT_71302 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 282
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 70/166 (42%), Gaps = 9/166 (5%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFG 114
R ++ G D R D+ + F YG + + +GF F+ + RDAEDA+ + F
Sbjct: 4 RRLYLGRLPPDTRSEDVSKFFDGYGHIVDCRVMTGFGFVEFESTRDAEDALNHFNGKPF- 62
Query: 115 RKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEP 174
G + +E+ K R R A RP RP +++ T +DL+
Sbjct: 63 -NGANIVIEFAKESRPRRDV---YEADRPRAR-RPPGIRLIVSGVSRDTSWQDLKDFGRE 117
Query: 175 YGKIISVRIRRNF---AFVQYEVQEDATRALDATNMSKLTDRVISV 217
G + I R+ ++Y +EDA RA+ + L R + V
Sbjct: 118 AGNVSYADIDRDHPGEGILEYLTREDADRAVRELDGKDLRGRQVRV 163
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 160 PYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 219
P TR+ D+ + F+ YG I+ R+ F FV++E DA AL+ N I +E+
Sbjct: 12 PPDTRSEDVSKFFDGYGHIVDCRVMTGFGFVEFESTRDAEDALNHFNGKPFNGANIVIEF 71
Query: 220 AVRDDDDRRNGHSPDRNRDRSP 241
A ++ RR+ + DR R R P
Sbjct: 72 A-KESRPRRDVYEADRPRARRP 92
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,758,897,627
Number of Sequences: 23463169
Number of extensions: 399237088
Number of successful extensions: 1912375
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3061
Number of HSP's successfully gapped in prelim test: 32020
Number of HSP's that attempted gapping in prelim test: 1575043
Number of HSP's gapped (non-prelim): 181772
length of query: 425
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 280
effective length of database: 8,957,035,862
effective search space: 2507970041360
effective search space used: 2507970041360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 78 (34.7 bits)