BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014384
(425 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P92965|RSP40_ARATH Arginine/serine-rich-splicing factor RSP40 OS=Arabidopsis thaliana
GN=RSP40 PE=1 SV=2
Length = 350
Score = 370 bits (949), Expect = e-101, Method: Compositional matrix adjust.
Identities = 235/382 (61%), Positives = 280/382 (73%), Gaps = 42/382 (10%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M+P+FCGNFEYDAR+ DLERLFR+YGKV+RVDMK+GFAF+YM+DERDAEDAIR LDR EF
Sbjct: 1 MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
GRKGRRLRVEWTK ERG + GG S R S++ RPSKTLFVINFD +TRTRDLE+HFE
Sbjct: 61 GRKGRRLRVEWTKSERGGDKRSGGGSRRS-SSSMRPSKTLFVINFDADNTRTRDLEKHFE 119
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSP 233
PYGKI++VRIRRNFAF+QYE QEDATRALDA+N SKL D+VISVEYAV+DDD R NGHSP
Sbjct: 120 PYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNGHSP 179
Query: 234 DRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSS-RSPYRRERGSPDYGRVRSPSPYRRD- 291
+R RDRS RRRSPSPY+RERGSPDYGRG+S + YR+ER SPDYGR RSPSPY++
Sbjct: 180 ERRRDRS-PERRRRSPSPYKRERGSPDYGRGASPVAAYRKERTSPDYGRRRSPSPYKKSR 238
Query: 292 RGSPDYGRN--SSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSP 349
RGSP+YGR+ + SP ++ER A SP+ Y + SP
Sbjct: 239 RGSPEYGRDRRGNDSPRRRERVA-------------------------SPTKYSR---SP 270
Query: 350 NNGR---GPSRSPYERERPSPENGRGGSRSPY---RRERPSPDNGRVPSPNSMPEPRDSP 403
NN R P+ SP+++E SP NG G SP R R SP+NG+V SP S+
Sbjct: 271 NNKRERMSPNHSPFKKE--SPRNGVGEVESPIERRERSRSSPENGQVESPGSIGRRDSDG 328
Query: 404 GYDGADSPINERYRSRSPPAED 425
GYDGA+SP+ + RSPPA++
Sbjct: 329 GYDGAESPMQKSRSPRSPPADE 350
>sp|P92966|RSP41_ARATH Arginine/serine-rich-splicing factor RSP41 OS=Arabidopsis thaliana
GN=RSP41 PE=1 SV=2
Length = 356
Score = 344 bits (882), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 240/389 (61%), Positives = 275/389 (70%), Gaps = 50/389 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M+P+FCGNFEYDAR+SDLERLFR+YGKV+RVDMK+GFAF+YM+DERDAEDAIR LDR E+
Sbjct: 1 MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEY 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
GR GRRLRVEWTK++RG +RR S+ RPSKTLFVINFD +TRTRDLERHFE
Sbjct: 61 GRTGRRLRVEWTKNDRGGAG--RSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFE 118
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSP 233
PYGKI++VRIRRNFAF+QYE QEDATRALDATN SKL D+VISVEYAV+DDD R NG+SP
Sbjct: 119 PYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGYSP 178
Query: 234 DRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRV-RSPSPYRRDR 292
+R RDRS RRRSPSPYRRERGSPDYGRG+S ++RER SPDYGR RSPSPY+R R
Sbjct: 179 ERRRDRS-PDRRRRSPSPYRRERGSPDYGRGASPVAHKRERTSPDYGRGRRSPSPYKRAR 237
Query: 293 GSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNG 352
SPDY R+ R +ER A SPENG + SP + G
Sbjct: 238 LSPDYKRDDRR----RERVA-----------------SPENGAVRNRSPRK--------G 268
Query: 353 RGPSRS--PYERER----PSPENGRGGSRSP----------YRRERPSPDNGRVPSPNSM 396
RG SRS PYE+ R P P R SRSP R + SP+NG+V SP +
Sbjct: 269 RGESRSPPPYEKRRESRSPPPYEKRRESRSPPPYEKRRERSRSRSKSSPENGQVESPGQI 328
Query: 397 PEPRDSPGYDGADSPINERYRSRSPPAED 425
E GYDGADSPI E SRSPPAE+
Sbjct: 329 MEVEAGRGYDGADSPIRES-PSRSPPAEE 356
>sp|P92964|RSP31_ARATH Arginine/serine-rich-splicing factor RSP31 OS=Arabidopsis thaliana
GN=RSP31 PE=1 SV=2
Length = 264
Score = 275 bits (703), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 168/283 (59%), Positives = 200/283 (70%), Gaps = 28/283 (9%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
MRP+F GNFEY+ RQSDLERLF +YG+VDRVDMKSG+AF+Y +DERDAEDAIR LD F
Sbjct: 1 MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPF 60
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + RRL VEW K ERG RP G + A +N +P+KTLFVINFDP T+ D+E+HFE
Sbjct: 61 GYEKRRLSVEWAKGERG--RPRGDAKA---PSNLKPTKTLFVINFDPIRTKEHDIEKHFE 115
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSP 233
PYGK+ +VRIRRNF+FVQ+E QEDAT+AL+AT SK+ DRV+SVEYA++DDD+R
Sbjct: 116 PYGKVTNVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALKDDDER-----D 170
Query: 234 DRNRDRSPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSPYRRDRG 293
DRN RSP RRS SP R R SPDYGR SP + R SPDYGR RSP Y R +G
Sbjct: 171 DRNGGRSP----RRSLSPVYRRRPSPDYGRRP--SPGQGRRPSPDYGRARSPE-YDRYKG 223
Query: 294 --------SPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDR 328
SPDYGR S S Y ++R+ G+ R SRSP R R
Sbjct: 224 PAAYERRRSPDYGRRS--SDYGRQRSP-GYDRYRSRSPVPRGR 263
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 45/88 (51%), Gaps = 18/88 (20%)
Query: 350 NNGRGPSRS--PYERERPSPENGRGGSRSPYRRERPSPDNGRVPSPN-------SMPEPR 400
N GR P RS P R RPSP+ GR SP + RPSPD GR SP + E R
Sbjct: 173 NGGRSPRRSLSPVYRRRPSPDYGR--RPSPGQGRRPSPDYGRARSPEYDRYKGPAAYERR 230
Query: 401 DSPGYD--GAD-----SPINERYRSRSP 421
SP Y +D SP +RYRSRSP
Sbjct: 231 RSPDYGRRSSDYGRQRSPGYDRYRSRSP 258
>sp|Q6IQ97|RBM41_DANRE RNA-binding protein 4.1 OS=Danio rerio GN=rbm4.1 PE=1 SV=1
Length = 419
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M IF GN + ++ LF +YGK+ D+ F F++MD + +A++AI+ L +
Sbjct: 1 MVKIFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKSEADEAIQNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K +P T+T+ L V N T ++L FE
Sbjct: 59 MLNGMAMNVEMSK--------------GKPKTSTK----LHVGNISSSCT-NQELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG ++ I +++AFV E EDA A+ + + +++SV+
Sbjct: 100 EYGPVVECDIVKDYAFVHMERVEDAMEAISGLDNTAFQGKLMSVK 144
>sp|Q3MHX3|RBM4_BOVIN RNA-binding protein 4 OS=Bos taurus GN=RBM4 PE=2 SV=1
Length = 362
Score = 78.6 bits (192), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKTSTKLHVGNISPTCT-NKELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>sp|Q4R979|RBM4_MACFA RNA-binding protein 4 OS=Macaca fascicularis GN=RBM4 PE=2 SV=1
Length = 364
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 21/149 (14%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKTSTKLHVGNISPTCT-NKELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRAL 202
YG +I I +++AFV E EDA A+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAI 128
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
+ GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF +
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF--Q 137
Query: 117 GRRLRVEWT 125
G+R+ V+ +
Sbjct: 138 GKRMHVQLS 146
>sp|Q9BWF3|RBM4_HUMAN RNA-binding protein 4 OS=Homo sapiens GN=RBM4 PE=1 SV=1
Length = 364
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 21/149 (14%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKTSTKLHVGNISPTCT-NKELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRAL 202
YG +I I +++AFV E EDA A+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAI 128
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
+ GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF +
Sbjct: 80 LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF--Q 137
Query: 117 GRRLRVEWT 125
G+R+ V+ +
Sbjct: 138 GKRMHVQLS 146
>sp|Q8C7Q4|RBM4_MOUSE RNA-binding protein 4 OS=Mus musculus GN=Rbm4 PE=1 SV=1
Length = 361
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>sp|Q06AT9|RBM4B_PIG RNA-binding protein 4B OS=Sus scrofa GN=RBM4B PE=2 SV=1
Length = 359
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>sp|Q9BDY9|RBM4_RABIT RNA-binding protein 4 OS=Oryctolagus cuniculus GN=RBM4 PE=2 SV=1
Length = 359
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>sp|Q64LC9|RBM4B_RAT RNA-binding protein 4B OS=Rattus norvegicus GN=Rbm4b PE=2 SV=2
Length = 357
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>sp|Q8VE92|RBM4B_MOUSE RNA-binding protein 4B OS=Mus musculus GN=Rbm4b PE=1 SV=1
Length = 357
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>sp|Q9BQ04|RBM4B_HUMAN RNA-binding protein 4B OS=Homo sapiens GN=RBM4B PE=1 SV=1
Length = 359
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--Y 58
Query: 114 GRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173
G + VE +K++ ++ S L V N P T ++L FE
Sbjct: 59 KLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFE 99
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218
YG +I I +++AFV E EDA A+ + ++ + + V+
Sbjct: 100 EYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
>sp|Q8VE97|SRSF4_MOUSE Serine/arginine-rich splicing factor 4 OS=Mus musculus GN=Srsf4
PE=2 SV=1
Length = 489
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 18/172 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLC-- 61
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTR--------PSKTLFVINFDPYHTRT--R 166
G R+ VE H RG RR G S R R P++T + + + +R +
Sbjct: 62 GERVIVE---HARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 167 DLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
DL+ + G++ + + R+N +++ D RAL+ + +++ R I
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>sp|Q08170|SRSF4_HUMAN Serine/arginine-rich splicing factor 4 OS=Homo sapiens GN=SRSF4
PE=1 SV=2
Length = 494
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 18/172 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLC-- 61
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTR--------PSKTLFVINFDPYHTRT--R 166
G R+ VE H RG RR G S R R P++T + + + +R +
Sbjct: 62 GERVIVE---HARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 167 DLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
DL+ + G++ + + R+N +++ D RAL+ + +++ R I
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>sp|Q94901|LARK_DROME RNA-binding protein lark OS=Drosophila melanogaster GN=lark PE=1
SV=1
Length = 352
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 18/165 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
+F GN + + ++L LF +YG V D+ + F++M+ E+ DAI+ L+
Sbjct: 9 LFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLN------- 61
Query: 117 GRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYG 176
+T +E I+ S R P+T P+ +FV N TR ++ F+ YG
Sbjct: 62 ------GYTLNEFAIKVE-AAKSRRAPNT---PTTKIFVGNLTD-KTRAPEVRELFQKYG 110
Query: 177 KIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
++ I RN+ FV + D A+ N + + + V+ +
Sbjct: 111 TVVECDIVRNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVST 155
>sp|Q5PPI1|SRSF9_RAT Serine/arginine-rich splicing factor 9 OS=Rattus norvegicus
GN=Srsf9 PE=1 SV=1
Length = 221
Score = 68.6 bits (166), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 82/160 (51%), Gaps = 11/160 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R+ DLE LF +YG++ +++K+ FAF+ +D RDAEDAI G +
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERH 171
++G+ RLRVE+ + G GG A R TR S +++ P +DL+ H
Sbjct: 76 DYGQC--RLRVEFPRAYGG---RGGWPRASRNGPPTRRSDFRVLVSGLPPSGSWQDLKDH 130
Query: 172 FEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
G + ++++ V+Y +ED AL + +K
Sbjct: 131 MREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 170
>sp|O22315|SRSF1_ARATH Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1
SV=1
Length = 303
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 88/203 (43%), Gaps = 29/203 (14%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLD 109
R ++ GN D R+ ++E LF +YG V ++D+K G+AF+ DD RDAEDAI G D
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRD 66
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN---------------TRPSKTLF 154
+F G RLRVE G RR + +R S+
Sbjct: 67 GYDF--DGHRLRVELA---HGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRV 121
Query: 155 VINFDPYHTRTRDLERHFEPYGKIISVRIRRN----FAFVQYEVQEDATRALDATNMSKL 210
++ P +DL+ H G + ++ R+ V Y ED AL + ++
Sbjct: 122 LVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTEF 181
Query: 211 TDRVISVEYAVRDDDDRRNGHSP 233
+ + VR+ D R++ SP
Sbjct: 182 RNAFSNGYVRVREYDSRKDSRSP 204
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 146 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRR-----NFAFVQYEVQEDATR 200
++R S+T++V N P R R++E F YG ++ + ++ +AFV+++ DA
Sbjct: 2 SSRSSRTVYVGNL-PGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 201 ALDATNMSKLTDRVISVEYA 220
A+ + + VE A
Sbjct: 61 AIHGRDGYDFDGHRLRVELA 80
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 92/216 (42%), Gaps = 21/216 (9%)
Query: 31 RRLYV-LGFRRSHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS- 88
+ +YV L + Q + +A ++ N + + Q + E LF +YGK+ ++
Sbjct: 194 QEVYVALHVSKKDRQSKLEEVKAKFTNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKD 253
Query: 89 ------GFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV--EWTKHERGIRRPGGGSSA 140
GF F+ +D A A+ L+ EF KG++L V K+ER +A
Sbjct: 254 SEGKLRGFGFVNFEDHAAAAKAVDELNELEF--KGQKLYVGRAQKKYERLQELKKQYEAA 311
Query: 141 RRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN-------FAFVQYE 193
R LFV N D L+ F P+G I S ++ R+ F FV +
Sbjct: 312 RLEKLAKYQGVNLFVKNLDD-SIDDEKLKEEFAPFGTITSAKVMRDETGNSRGFGFVCFS 370
Query: 194 VQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRN 229
E+AT+A+ N + + + V A R + RRN
Sbjct: 371 TPEEATKAITEKNQQIVAGKPLYVAIAQR-KEVRRN 405
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 75/184 (40%), Gaps = 32/184 (17%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRV--------DMKSGFAFIYMDDERDAEDAIRGL 108
++ G E ++ L +F G V + + G+A++ D AI L
Sbjct: 40 LYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQL 99
Query: 109 DRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDL 168
+ T KG+ R+ W++ + +R+ G G+ +++ N P + L
Sbjct: 100 NYTLI--KGKPCRIMWSQRDPSLRKKGSGN--------------IYIKNLHP-AIDNKSL 142
Query: 169 ERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
F +G I+S ++ R F FV +E + DA A++A + + D+ + V V
Sbjct: 143 HETFSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHV 202
Query: 222 RDDD 225
D
Sbjct: 203 SKKD 206
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 63/164 (38%), Gaps = 25/164 (15%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKSGFAFIYMDDERDAEDAIRGLD 109
I+ N L F +G + D + GF F++ ++E DA DAI +D
Sbjct: 128 IYIKNLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVD 187
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLE 169
+ + + +K +R + + TN ++V N D T + E
Sbjct: 188 GMLMNDQEVYVALHVSKKDRQSKL----EEVKAKFTN------VYVKNIDQ-ETSQEEFE 236
Query: 170 RHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATN 206
F YGKI S + R F FV +E A +A+D N
Sbjct: 237 ELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELN 280
>sp|Q5RC41|RBM14_PONAB RNA-binding protein 14 OS=Pongo abelii GN=RBM14 PE=2 SV=1
Length = 669
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 76/169 (44%), Gaps = 25/169 (14%)
Query: 57 IFCGNFE-YDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGR 115
IF GN + D +L LF YG V + FAF++M + A AI L E R
Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL-R 61
Query: 116 KGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKT--LFVINFDPYHTRTRDLERHFE 173
GR L VE + RP RP T +FV N T +++L FE
Sbjct: 62 PGRALVVE-------MSRP-------------RPLNTWKIFVGNVSAACT-SQELRSLFE 100
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 222
G++I + +++AFV E + DA A+ N ++ + I+VE + +
Sbjct: 101 RRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 149
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 14/96 (14%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
IF GN +L LF R G+V D+ +AF++M+ E DA+ AI L+ E K
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEV--K 138
Query: 117 GRRLRVEW-TKHER---GI--------RRPGGGSSA 140
G+R+ VE TK ++ G+ ++PG G +A
Sbjct: 139 GKRINVELSTKGQKKGPGLAVQSGDKTKKPGAGDTA 174
>sp|Q5EA36|RBM14_BOVIN RNA-binding protein 14 OS=Bos taurus GN=RBM14 PE=2 SV=1
Length = 669
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 76/169 (44%), Gaps = 25/169 (14%)
Query: 57 IFCGNFE-YDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGR 115
IF GN + D +L LF YG V + FAF++M + A AI L E R
Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHEL-R 61
Query: 116 KGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKT--LFVINFDPYHTRTRDLERHFE 173
GR L VE + RP RP T +FV N T +++L FE
Sbjct: 62 PGRALVVE-------MSRP-------------RPLNTWKIFVGNVSAACT-SQELRSLFE 100
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 222
G++I + +++AFV E + DA A+ N ++ + I+VE + +
Sbjct: 101 RRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 149
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 14/96 (14%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
IF GN +L LF R G+V D+ +AF++M+ E DA+ AI L+ E K
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEV--K 138
Query: 117 GRRLRVEW-TKHER---GI--------RRPGGGSSA 140
G+R+ VE TK ++ G+ ++PG G +A
Sbjct: 139 GKRINVELSTKGQKKGPGLAIQSGDKTKKPGAGDTA 174
>sp|Q96PK6|RBM14_HUMAN RNA-binding protein 14 OS=Homo sapiens GN=RBM14 PE=1 SV=2
Length = 669
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 76/169 (44%), Gaps = 25/169 (14%)
Query: 57 IFCGNFE-YDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGR 115
IF GN + D +L LF YG V + FAF++M + A AI L E R
Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL-R 61
Query: 116 KGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKT--LFVINFDPYHTRTRDLERHFE 173
GR L VE + RP RP T +FV N T +++L FE
Sbjct: 62 PGRALVVE-------MSRP-------------RPLNTWKIFVGNVSAACT-SQELRSLFE 100
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 222
G++I + +++AFV E + DA A+ N ++ + I+VE + +
Sbjct: 101 RRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 149
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 14/96 (14%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
IF GN +L LF R G+V D+ +AF++M+ E DA+ AI L+ E K
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEV--K 138
Query: 117 GRRLRVEW-TKHER---GI--------RRPGGGSSA 140
G+R+ VE TK ++ G+ ++PG G +A
Sbjct: 139 GKRINVELSTKGQKKGPGLAVQSGDKTKKPGAGDTA 174
>sp|Q9D0B0|SRSF9_MOUSE Serine/arginine-rich splicing factor 9 OS=Mus musculus GN=Srsf9
PE=1 SV=1
Length = 222
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 81/160 (50%), Gaps = 11/160 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R+ DLE LF +YG++ +++K+ FAF+ +D RDAEDAI G +
Sbjct: 17 IYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 76
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERH 171
++G+ RLRVE+ + G GG R TR S +++ P +DL+ H
Sbjct: 77 DYGQC--RLRVEFPRTYGG---RGGWPRGARNGPPTRRSDFRVLVSGLPPSGSWQDLKDH 131
Query: 172 FEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
G + ++++ V+Y +ED AL + +K
Sbjct: 132 MREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 171
>sp|Q8C2Q3|RBM14_MOUSE RNA-binding protein 14 OS=Mus musculus GN=Rbm14 PE=1 SV=1
Length = 669
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 76/169 (44%), Gaps = 25/169 (14%)
Query: 57 IFCGNFE-YDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGR 115
IF GN + D +L LF YG V + FAF++M + A AI L E R
Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHEL-R 61
Query: 116 KGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKT--LFVINFDPYHTRTRDLERHFE 173
GR L VE + RP RP T +FV N T +++L FE
Sbjct: 62 PGRALVVE-------MSRP-------------RPLNTWKIFVGNVSAACT-SQELRSLFE 100
Query: 174 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 222
G++I + +++AFV E + DA A+ N ++ + I+VE + +
Sbjct: 101 RRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 149
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 14/96 (14%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
IF GN +L LF R G+V D+ +AF++M+ E DA+ AI L+ E K
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEV--K 138
Query: 117 GRRLRVEWTK--HERG----------IRRPGGGSSA 140
G+R+ VE + ++G ++PG G +A
Sbjct: 139 GKRINVELSTKGQKKGPALAIQSGDKTKKPGAGDTA 174
>sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis
elegans GN=rsp-3 PE=1 SV=2
Length = 258
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 50/75 (66%), Gaps = 6/75 (8%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG----FAFIYMDDERDAEDAIRGLDR 110
+ ++ GN D R+ ++E +F +YG++ VD+KSG FAF+ +D RDAEDA+R D
Sbjct: 9 QKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDG 68
Query: 111 TEFGRKGRRLRVEWT 125
EF GRR+RVE+T
Sbjct: 69 YEF--DGRRIRVEFT 81
>sp|Q10021|RSP5_CAEEL Probable splicing factor, arginine/serine-rich 5 OS=Caenorhabditis
elegans GN=rsp-5 PE=3 SV=3
Length = 208
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 41/70 (58%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y+AR+ D+ER + YGK++ + MK GFAF+ +D RDAEDA LD
Sbjct: 4 LYLGKIPYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTMEGS 63
Query: 117 GRRLRVEWTK 126
RL VE +
Sbjct: 64 SMRLVVEMAR 73
>sp|Q8LPQ9|FPA_ARATH Flowering time control protein FPA OS=Arabidopsis thaliana GN=FPA
PE=2 SV=2
Length = 901
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 32/152 (21%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS--GFAFIY---MDDERDAEDAIRGLDRT 111
++ G+ + +SDL LF RYG +DR+ + S GFAFIY +++ A++A++G +
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFAFIYYRHVEEAVAAKEALQGAN-- 77
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERH 171
G ++++E+ RP+ +P K+L+V P + DLE
Sbjct: 78 ---LNGSQIKIEYA----------------RPA---KPCKSLWVGGIGP-NVSKDDLEEE 114
Query: 172 FEPYGKIISVRI--RRNFAFVQYEVQEDATRA 201
F +GKI R R AF+ Y +DA +A
Sbjct: 115 FSKFGKIEDFRFLRERKTAFIDYYEMDDALQA 146
Score = 40.8 bits (94), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 150 SKTLFVINFDPYHTRTRDLERHFEPYGKI--ISVRIRRNFAFVQYEVQEDATRALDATNM 207
S L+V + P T + DL F YG I I+V R FAF+ Y E+A A +A
Sbjct: 17 SNNLWVGSLTPETTES-DLTELFGRYGDIDRITVYSSRGFAFIYYRHVEEAVAAKEALQG 75
Query: 208 SKLTDRVISVEYA 220
+ L I +EYA
Sbjct: 76 ANLNGSQIKIEYA 88
Score = 38.9 bits (89), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 70/167 (41%), Gaps = 27/167 (16%)
Query: 55 RPIFCGNFEYDARQSDLERLFRRYGKVD--RVDMKSGFAFIYMDDERDAEDAIRGLDRTE 112
+ ++ G + + DLE F ++GK++ R + AFI D + +DA++
Sbjct: 95 KSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKTAFI---DYYEMDDALQAKSMNG 151
Query: 113 FGRKGRRLRVEWTKHERGIRRPGGGSSARRPST----------------NTRPSKTLFVI 156
G LRV++ + + + GS R + +PSK L+ I
Sbjct: 152 KPMGGSFLRVDFLRSQAPKKEQWAGSYDNRNGNMNHKPQYPHSYEDFKGDVQPSKVLW-I 210
Query: 157 NFDPYHTRTRD---LERHFEPYGKIISVRI--RRNFAFVQYEVQEDA 198
F P T+ D L +G+I V+ RNFA V++ E+A
Sbjct: 211 GFPPTATQCNDEQILHNAMILFGEIERVKSYPSRNFALVEFRSAEEA 257
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 78/194 (40%), Gaps = 22/194 (11%)
Query: 50 FEAM---MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDER 99
FE M ++ N + + E L ++GK D V ++ GF F+ +
Sbjct: 208 FEEMKANFTNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHE 267
Query: 100 DAEDAIRGLDRTEFGRKGRRLRVE--WTKHERGIRRPGGGSSARRPSTNTRPSKTLFVIN 157
DA + L+ TEF KG+ L V K+ER + R LF+ N
Sbjct: 268 DAVKCVEELNNTEF--KGQPLYVNRAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKN 325
Query: 158 FDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKL 210
D + LE F PYG I S ++ + F FV + E+AT+A+ N +
Sbjct: 326 LDD-SIDDKKLEEEFAPYGTITSAKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIV 384
Query: 211 TDRVISVEYAVRDD 224
+ + V A R D
Sbjct: 385 AGKPLYVAIAQRKD 398
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 79/182 (43%), Gaps = 32/182 (17%)
Query: 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAE 102
E + ++ G+ + ++ L +F G V D + S G+A++ +D A+
Sbjct: 31 ETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAK 90
Query: 103 DAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYH 162
AI L+ T KG+ R+ W++ + +R+ G G+ +F+ N P
Sbjct: 91 TAIEKLNFTPI--KGKLCRIMWSQRDPSLRKKGAGN--------------IFIKNLHP-D 133
Query: 163 TRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVI 215
+ L F +G I+S ++ + F +V +E E A+ A+DA N L + I
Sbjct: 134 IDNKALYDTFSVFGNILSSKVATDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEI 193
Query: 216 SV 217
V
Sbjct: 194 YV 195
>sp|Q23120|RSP2_CAEEL Probable splicing factor, arginine/serine-rich 2 OS=Caenorhabditis
elegans GN=rsp-2 PE=3 SV=1
Length = 281
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 81/189 (42%), Gaps = 21/189 (11%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113
M ++ G A D+E FR YGK+ V MK+GF F+ D+RDA+DA+ L+ E
Sbjct: 1 MVRVYIGRLPNRASDRDVEHFFRGYGKLSDVIMKNGFGFVDFQDQRDADDAVHDLNGKEL 60
Query: 114 GRKGRRLRVEWTKHERGI--RRPGGGSSARRPSTN-----------TRPSKTLFVINFDP 160
G R+ +E+ + + G R G G R P+ +RP T F + D
Sbjct: 61 C--GERVILEFPRRKVGYNEERSGSGFRGREPTFRKGGERQFSNRYSRPCSTRFRLVIDN 118
Query: 161 YHTR--TRDLERHFEPYGK--IISVRIRRNF--AFVQYEVQEDATRALDATNMSKLTDRV 214
TR +D++ H G S +RN A V + +D A++ L R
Sbjct: 119 LSTRYSWQDIKDHIRKLGIEPTYSEAHKRNVNQAIVCFTSHDDLRDAMNKLQGEDLNGRK 178
Query: 215 ISVEYAVRD 223
+ RD
Sbjct: 179 LKCTDETRD 187
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 32/184 (17%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDAIRGL 108
++ G ++ L +F G+V D V KS G+A++ D E AI L
Sbjct: 69 LYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEKAIEEL 128
Query: 109 DRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDL 168
+ T +GR R+ W++ + RR G G+ +F+ N P + L
Sbjct: 129 NYTPV--EGRPCRIMWSQRDPSARRSGDGN--------------IFIKNLHP-AIDNKAL 171
Query: 169 ERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
F +GKI+SV++ + F FV YE +E A A+++ N L DR + V V
Sbjct: 172 HDTFSAFGKILSVKVATDDLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYVGKHV 231
Query: 222 RDDD 225
D
Sbjct: 232 SKKD 235
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 76/184 (41%), Gaps = 19/184 (10%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-------GFAFIYMDDERDAEDAIRGLD 109
I+ N + + + E LF +GK+ + ++ GF F+ ++ A A+ L+
Sbjct: 250 IYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELN 309
Query: 110 RTEFGRKGRRLRV--EWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRD 167
E G+++ V K ER + R + LFV N D +
Sbjct: 310 DKEI--NGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDE-QIDSEK 366
Query: 168 LERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
LE F+P+G I S ++ + F FV + E+AT+A+ N + + + V A
Sbjct: 367 LEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALA 426
Query: 221 VRDD 224
R D
Sbjct: 427 QRKD 430
Score = 37.0 bits (84), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 150 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN--------FAFVQYEVQEDATRA 201
S +L+V +P L F P G++ S+R+ R+ +A+V Y ED +A
Sbjct: 66 SASLYVGELNP-SVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEKA 124
Query: 202 LDATNMSKLTDRVISVEYAVRDDDDRRNG 230
++ N + + R + ++ RD RR+G
Sbjct: 125 IEELNYTPVEGRPCRIMWSQRDPSARRSG 153
>sp|Q4P8R9|PABP_USTMA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1
Length = 651
Score = 62.0 bits (149), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 89/207 (42%), Gaps = 23/207 (11%)
Query: 40 RSHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAF 92
R Q I A ++ N + + + E+LF ++GK+ ++ GF F
Sbjct: 212 RKERQAKIEETRANFTNVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKSKGFGF 271
Query: 93 IYMDDERDAEDAIRGLDRTEFGRKGRRLRV----EWTKHERGIRRPGGGSSARRPSTNTR 148
+ +D +A+ A+ L ++F KG++L V + ++ E +RR +A+
Sbjct: 272 VNFEDHNEAQKAVDELHDSDF--KGQKLFVARAQKKSEREEELRR--SYEAAKNEKLAKF 327
Query: 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRR-------NFAFVQYEVQEDATRA 201
L++ N + R L F P+G I S +I R F FV Y E+A +A
Sbjct: 328 QGVNLYLKNIPESYDDER-LREEFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKA 386
Query: 202 LDATNMSKLTDRVISVEYAVRDDDDRR 228
+ N L +R + V A R D R+
Sbjct: 387 VSEMNGKMLDNRPLYVALAQRKDVRRQ 413
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 75/179 (41%), Gaps = 31/179 (17%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDAIRGL 108
++ G + ++ L +F G V D V +S G+A++ + D E A+ L
Sbjct: 49 LYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQL 108
Query: 109 DRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDL 168
+ + + R R+ W++ + +RR G G+ +F+ N D + L
Sbjct: 109 NYSLI--RNRPCRIMWSQRDPALRRTGQGN--------------IFIKNLDA-GIDNKAL 151
Query: 169 ERHFEPYGKIISVRIRRN------FAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
F +G I+S ++ N + FV YE E A A+ N L D+ + V + +
Sbjct: 152 HDTFAAFGNILSCKVATNETGSLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHI 210
Score = 40.0 bits (92), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Query: 133 RPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN------ 186
+P G+ +R + + + +L+V DP T E F G + S+R+ R+
Sbjct: 29 QPAVGNGEQRNNADAANNTSLYVGELDPSVTEAMLFE-IFSMIGTVASIRVCRDAVTRRS 87
Query: 187 --FAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGH 231
+A+V + D RA++ N S + +R + ++ RD RR G
Sbjct: 88 LGYAYVNFLNAADGERAMEQLNYSLIRNRPCRIMWSQRDPALRRTGQ 134
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 33/179 (18%)
Query: 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRV----DMKS----GFAFIYMDDERDAEDAI 105
M ++ G+ D ++ L F G + + DM + G+A++ DAE
Sbjct: 10 MASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAE--- 66
Query: 106 RGLDRTEFGR-KGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTR 164
R LD F KGR +R+ W++ + +R+ G G+ +F+ N D
Sbjct: 67 RALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGN--------------IFIKNLDK-SID 111
Query: 165 TRDLERHFEPYGKIISVRI------RRNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
+ L F +G I+S ++ + + FV +E QE A RA+D N L DR + V
Sbjct: 112 NKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV 170
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 81/208 (38%), Gaps = 19/208 (9%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-------GFAFIYMDDERDAEDAIRGLD 109
++ NF D L+ +F +YG V + + GF F+ + DA+ A+ ++
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLE 169
+ K + K ER ++ L+V N D R L
Sbjct: 253 GKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER-LR 311
Query: 170 RHFEPYGKIISVRIR------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 223
+ F P+G I S ++ + F FV + E+AT+A+ N + + + V A R
Sbjct: 312 KEFLPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Query: 224 DDDRRNGHSPDRNRDRSPDRGRRRSPSP 251
++ R H ++ R R P+P
Sbjct: 372 EE--RQAHLTNQYMQR---MASVRVPNP 394
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 21/140 (15%)
Query: 143 PSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN--------FAFVQYEV 194
PS + P +L+V + T E+ F P G I+S+R+ R+ +A+V ++
Sbjct: 3 PSAPSYPMASLYVGDLHQDVTEAMLYEK-FSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 195 QEDATRALDATNMSKLTDRVISVEYAVRDDDDRRN--GHSPDRNRDRSPDR--------- 243
DA RALD N + R + + ++ RD R++ G+ +N D+S D
Sbjct: 62 PADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA 121
Query: 244 -GRRRSPSPYRRERGSPDYG 262
G S E GS YG
Sbjct: 122 FGNILSCKVVCDENGSKGYG 141
>sp|Q13242|SRSF9_HUMAN Serine/arginine-rich splicing factor 9 OS=Homo sapiens GN=SRSF9
PE=1 SV=1
Length = 221
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 80/160 (50%), Gaps = 11/160 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R+ DLE LF +YG++ +++K+ FAF+ +D RDAEDAI G +
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERH 171
++G+ RLRVE+ + G G P TR S +++ P +DL+ H
Sbjct: 76 DYGQC--RLRVEFPRTYGGRGGWPRGGRNGPP---TRRSDFRVLVSGLPPSGSWQDLKDH 130
Query: 172 FEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
G + ++++ V+Y +ED AL + +K
Sbjct: 131 MREAGDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTKF 170
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 80/194 (41%), Gaps = 22/194 (11%)
Query: 50 FEAM---MRPIFCGNFEYDARQSDLERLFRRYGKVDRV------DMKS-GFAFIYMDDER 99
FE M I+ N + + + E+LF +GK+ + D KS GF F+ +D
Sbjct: 225 FEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHE 284
Query: 100 DAEDAIRGLDRTEFGRKGRRLRV--EWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVIN 157
A A+ L+ E G+++ V K ER + R LFV N
Sbjct: 285 SAVKAVEELNDKEI--NGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKN 342
Query: 158 FDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKL 210
D + LE F+P+G I S ++ + F FV + E+AT+A+ N +
Sbjct: 343 LDD-TIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMI 401
Query: 211 TDRVISVEYAVRDD 224
+ + V A R D
Sbjct: 402 NGKPLYVALAQRKD 415
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 32/176 (18%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDAIRGL 108
++ G ++ L +F G+V D V KS G+A++ D E AI L
Sbjct: 54 LYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEEL 113
Query: 109 DRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDL 168
+ +GR R+ W++ + RR G G+ +F+ N P + L
Sbjct: 114 NYNPI--EGRPCRIMWSQRDPSARRSGDGN--------------IFIKNLHP-AIDNKAL 156
Query: 169 ERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
F +GKI+S ++ + F FV YE E A A++ N L DR + V
Sbjct: 157 HDTFSAFGKILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFV 212
Score = 35.4 bits (80), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 150 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN--------FAFVQYEVQEDATRA 201
S +L+V +P L F P G++ S+R+ R+ +A+V Y ED +A
Sbjct: 51 SASLYVGELNP-SVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKA 109
Query: 202 LDATNMSKLTDRVISVEYAVRDDDDRRNG 230
++ N + + R + ++ RD RR+G
Sbjct: 110 IEELNYNPIEGRPCRIMWSQRDPSARRSG 138
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 72/182 (39%), Gaps = 15/182 (8%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-------GFAFIYMDDERDAEDAIRGLD 109
I+ N + + + E+LF +YG++ ++ GF F+ D A A+ L+
Sbjct: 233 IYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELN 292
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLE 169
EF + + K+ER R LF+ N D L+
Sbjct: 293 GKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDD-SIDDEKLK 351
Query: 170 RHFEPYGKIISVRIRRN-------FAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 222
F PYG I S R+ R+ F FV + E+AT+A+ N + + + V A R
Sbjct: 352 EEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIAQR 411
Query: 223 DD 224
D
Sbjct: 412 KD 413
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 24/125 (19%)
Query: 89 GFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTR 148
G+A++ D + AI+ L+ E GR R+ W++ + IR+ G G+
Sbjct: 92 GYAYVNYTDYEAGKKAIQELNYAEI--NGRPCRIMWSERDPAIRKKGSGN---------- 139
Query: 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRA 201
+F+ N P + L F +G+++S ++ R F FV ++ + DA A
Sbjct: 140 ----IFIKNLHP-AIDNKALHETFSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDA 194
Query: 202 LDATN 206
++A N
Sbjct: 195 IEAVN 199
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 67/175 (38%), Gaps = 25/175 (14%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-------GFAFIYMDDERDAEDAIRGLD 109
IF N L F +G+V + GF F++ +E DA+DAI ++
Sbjct: 140 IFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVN 199
Query: 110 RTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLE 169
G L V H R A+ TN ++V N D T + E
Sbjct: 200 ----GMLMNGLEVYVAMHVPKKDRISKLEEAKANFTN------IYVKNID-VETTDEEFE 248
Query: 170 RHFEPYGKIISVRIRRN-------FAFVQYEVQEDATRALDATNMSKLTDRVISV 217
+ F YG+I+S + ++ F FV + A +A++ N + + + V
Sbjct: 249 QLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYV 303
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
PE=3 SV=2
Length = 631
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 100/240 (41%), Gaps = 29/240 (12%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-------GFAFIYMDDERDAEDAIRGLD 109
++ N + + E +F+ +G V V +++ GF F+ ++ A +A++ ++
Sbjct: 241 VYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEMN 300
Query: 110 RTEFGRKGRRLRV--EWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRD 167
E G++L V K ER S R + LFV N D +
Sbjct: 301 DKEI--DGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNLDD-SIDSEK 357
Query: 168 LERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
LE F+P+G I S R+ + F FV + E+AT+A+ N + + + V A
Sbjct: 358 LEEEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALA 417
Query: 221 VRDDDDRRN--GHSPDRNRDRSPDR-------GRRRSPSPYRRERG-SPDYGRGSSRSPY 270
R D R RN+ R + G+ SP Y ++ G P GRG ++ P+
Sbjct: 418 QRKDVRRSQLEQQIQARNQMRMQNAAAAAGMPGQFMSPMFYGQQPGFFPPNGRGGAQGPF 477
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 32/176 (18%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDAIRGL 108
++ G ++ L +F G+V D V KS G+A++ D AI L
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 109 DRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDL 168
+ + GR R+ W++ + +RR G G+ +F+ N P + L
Sbjct: 120 NYSLV--DGRPCRIMWSQRDPSLRRNGDGN--------------IFIKNLHP-AIDNKAL 162
Query: 169 ERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
F +G+I+S ++ + F FV YE E A A++ N L DR + V
Sbjct: 163 HDTFSAFGRILSCKVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFV 218
Score = 36.2 bits (82), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 153 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN--------FAFVQYEVQEDATRALDA 204
L+V +P E F P G++ S+R+ R+ +A+V + D +RA++
Sbjct: 60 LYVGELNPSVNEALLFEI-FSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEE 118
Query: 205 TNMSKLTDRVISVEYAVRDDDDRRNG 230
N S + R + ++ RD RRNG
Sbjct: 119 LNYSLVDGRPCRIMWSQRDPSLRRNG 144
>sp|Q13247|SRSF6_HUMAN Serine/arginine-rich splicing factor 6 OS=Homo sapiens GN=SRSF6
PE=1 SV=2
Length = 344
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y+ R+ D++R F YG++ VD+K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELC-- 61
Query: 117 GRRLRVEWTKHERGIRR 133
G R+ VE H RG RR
Sbjct: 62 GERVIVE---HARGPRR 75
>sp|Q3B7L6|SRSF6_BOVIN Serine/arginine-rich splicing factor 6 OS=Bos taurus GN=SRSF6 PE=2
SV=1
Length = 345
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 86/180 (47%), Gaps = 24/180 (13%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G Y+ R+ D++R F YG++ +D+K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLGIDLKNGYGFVEFEDSRDADDAVYELNGKELC-- 61
Query: 117 GRRLRVEWTKHERGIRR---------PGGGSSARRPSTNTR-----PSKTLFVINFDPYH 162
G R+ VE H RG RR GG T+ R P +T F + +
Sbjct: 62 GERVIVE---HARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEFRLIVENLS 118
Query: 163 TRT--RDLERHFEPYGKII---SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
+R +DL+ G++ + + R N +++ D RALD + +++ R I +
Sbjct: 119 SRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRL 178
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 161 YHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
Y+ R +D++R F YG+++ + ++ + FV++E DA A+ N +L + VE+A
Sbjct: 11 YNVREKDIQRFFSGYGRLLGIDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHA 70
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
Length = 673
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 77/180 (42%), Gaps = 32/180 (17%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDAIRGL 108
++ G + ++ L +F G V D V +S G+A++ + D E A+ L
Sbjct: 48 LYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 107
Query: 109 DRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDL 168
+ + KG+ R+ W++ + +R+ G G+ +F+ N D + L
Sbjct: 108 NYSLI--KGQSCRIMWSQRDPALRKTGQGN--------------IFIKNLD-QSIDNKAL 150
Query: 169 ERHFEPYGKIISVRI-------RRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
F +G I+S ++ R FAFV Y E A A+ A N L D+ + V + V
Sbjct: 151 HDTFAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHV 210
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 92/391 (23%), Positives = 147/391 (37%), Gaps = 55/391 (14%)
Query: 31 RRLYVLGFRRSHSQLS-IAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-- 87
+++YV +LS + A ++ N + + ++ E L + +G V +
Sbjct: 202 KKVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRD 261
Query: 88 -----SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARR 142
GF F+ ++ A A+ L+ E K TK ER R
Sbjct: 262 EKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRL 321
Query: 143 PSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN-------FAFVQYEVQ 195
+ L+V N D R L FE +G I S ++ R+ F FV Y
Sbjct: 322 ENEAKSAGVNLYVKNLDDEWDDDR-LRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSP 380
Query: 196 EDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSPDRNRDRSPDRGRRRSPSP-YRR 254
++AT+A+ N + + + V A R D R+ S + R+ R + + P +
Sbjct: 381 DEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQALES--QIAQRAQQRMQYGAGFPGMQG 438
Query: 255 ERGSPDYG---------------------RGSSRSPYRRERGSPDYGRVRSPSPYRRDRG 293
G P YG G +P + P + P P G
Sbjct: 439 YMGQPMYGYPPMPGYGQPMPGMPPVRGPMMGYPGAPQNMMQSRPRFNPNGQPLP----GG 494
Query: 294 SPDYGRNSSRSPYKKERAAIGHGR--GPSRSPYRRDRGSPENGHGSSPSPYRKGKPS--- 348
P YG + PY A G+ G +R P + P NG G SP +G P+
Sbjct: 495 VPAYGM-PPQVPYP---GAPGYPVRPGGARIPAAPNANGPRNG-GPSPVGAPQGLPAGSI 549
Query: 349 PNNGRGPSRSPYERERPSPENGRGGSRSPYR 379
P G+ P+R P+E+ P+P+ GR ++S R
Sbjct: 550 PRGGQMPAR-PHEQAAPAPQAGRLDAQSLAR 579
Score = 38.9 bits (89), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 11/103 (10%)
Query: 150 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN--------FAFVQYEVQEDATRA 201
S +L+V DP T E F G + S+R+ R+ +A+V Y D RA
Sbjct: 45 SASLYVGELDPSVTEAMLFEI-FNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERA 103
Query: 202 LDATNMSKLTDRVISVEYAVRDDDDRRNGHSP--DRNRDRSPD 242
L+ N S + + + ++ RD R+ G +N D+S D
Sbjct: 104 LEHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSID 146
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 77/180 (42%), Gaps = 32/180 (17%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDAIRGL 108
++ G + ++ L +F G V D V +S G+A++ + D E A+ L
Sbjct: 48 LYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 107
Query: 109 DRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDL 168
+ + KG+ R+ W++ + +R+ G G+ +F+ N D + L
Sbjct: 108 NYSLI--KGQSCRIMWSQRDPALRKTGQGN--------------IFIKNLD-QSIDNKAL 150
Query: 169 ERHFEPYGKIISVRI-------RRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221
F +G I+S ++ R FAFV Y E A A+ A N L D+ + V + V
Sbjct: 151 HDTFAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHV 210
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 92/391 (23%), Positives = 147/391 (37%), Gaps = 55/391 (14%)
Query: 31 RRLYVLGFRRSHSQLS-IAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-- 87
+++YV +LS + A ++ N + + ++ E L + +G V +
Sbjct: 202 KKVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRD 261
Query: 88 -----SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARR 142
GF F+ ++ A A+ L+ E K TK ER R
Sbjct: 262 EKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRL 321
Query: 143 PSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN-------FAFVQYEVQ 195
+ L+V N D R L FE +G I S ++ R+ F FV Y
Sbjct: 322 ENEAKSAGVNLYVKNLDDEWDDDR-LRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSP 380
Query: 196 EDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSPDRNRDRSPDRGRRRSPSP-YRR 254
++AT+A+ N + + + V A R D R+ S + R+ R + + P +
Sbjct: 381 DEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQALES--QIAQRAQQRMQYGAGFPGMQG 438
Query: 255 ERGSPDYG---------------------RGSSRSPYRRERGSPDYGRVRSPSPYRRDRG 293
G P YG G +P + P + P P G
Sbjct: 439 YMGQPMYGYPPMPGYGQPMPGMPPVRGPMMGYPGAPQNMMQSRPRFNPNGQPLP----GG 494
Query: 294 SPDYGRNSSRSPYKKERAAIGHGR--GPSRSPYRRDRGSPENGHGSSPSPYRKGKPS--- 348
P YG + PY A G+ G +R P + P NG G SP +G P+
Sbjct: 495 VPAYGM-PPQVPYP---GAPGYPVRPGGARIPAAPNANGPRNG-GPSPVGAPQGLPAGSI 549
Query: 349 PNNGRGPSRSPYERERPSPENGRGGSRSPYR 379
P G+ P+R P+E+ P+P+ GR ++S R
Sbjct: 550 PRGGQMPAR-PHEQAAPAPQAGRLDAQSLAR 579
Score = 38.9 bits (89), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 11/103 (10%)
Query: 150 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN--------FAFVQYEVQEDATRA 201
S +L+V DP T E F G + S+R+ R+ +A+V Y D RA
Sbjct: 45 SASLYVGELDPSVTEAMLFEI-FNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERA 103
Query: 202 LDATNMSKLTDRVISVEYAVRDDDDRRNGHSP--DRNRDRSPD 242
L+ N S + + + ++ RD R+ G +N D+S D
Sbjct: 104 LEHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSID 146
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 22/194 (11%)
Query: 50 FEAM---MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-------GFAFIYMDDER 99
FE M ++ N + D + + ++LF YGK+ + ++ GF F+ ++
Sbjct: 224 FEEMKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHE 283
Query: 100 DAEDAIRGLDRTEFGRKGRRLRV--EWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVIN 157
A A+ L+ E G+++ V K ER + R + LF+ N
Sbjct: 284 SAVKAVDELNDKEI--NGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKN 341
Query: 158 FDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKL 210
D + LE F+P+G I S R+ + F FV + E+AT+A+ N +
Sbjct: 342 LDD-TIDSEKLEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMI 400
Query: 211 TDRVISVEYAVRDD 224
+ + V A R D
Sbjct: 401 YGKPLYVALAQRKD 414
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 32/176 (18%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDAIRGL 108
++ G ++ L +F G+V D V KS G+A++ D E AI L
Sbjct: 53 LYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDL 112
Query: 109 DRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDL 168
+ + +GR R+ W++ + +RR G G+ +F+ N P + L
Sbjct: 113 NYSLI--EGRPCRIMWSQRDPSLRRNGDGN--------------IFIKNLHP-AIDNKAL 155
Query: 169 ERHFEPYGKIISVR-------IRRNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
F +GKI+S + I + F FV YE E A A++ N L DR + V
Sbjct: 156 HDTFTAFGKILSCKVATDDMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYV 211
Score = 37.0 bits (84), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 150 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN--------FAFVQYEVQEDATRA 201
S +L+V +P E F P G++ S+R+ R+ +A+V + ED +A
Sbjct: 50 SASLYVGELNPSVNEALLFEI-FSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKA 108
Query: 202 LDATNMSKLTDRVISVEYAVRDDDDRRNG 230
++ N S + R + ++ RD RRNG
Sbjct: 109 IEDLNYSLIEGRPCRIMWSQRDPSLRRNG 137
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1
SV=1
Length = 233
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 73/180 (40%), Gaps = 27/180 (15%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVD--------RVDMKSGFAFIYMDDERDAEDAIRGL 108
+F GN YD L +F G V+ D GF F+ M +AE A+ L
Sbjct: 57 LFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELL 116
Query: 109 DRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDL 168
+ + GR+L V + GS R P + PS ++V N P+ T L
Sbjct: 117 NG--YDMDGRQLTVN--------KAAPRGSPERAPRGDFEPSCRVYVGNL-PWDVDTSRL 165
Query: 169 ERHFEPYGKIISVRI--------RRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
E+ F +GK++S R+ R F FV + + A+ A + L R + V A
Sbjct: 166 EQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVA 225
>sp|Q8VYA5|RSZ33_ARATH Serine/arginine-rich splicing factor RS2Z33 OS=Arabidopsis thaliana
GN=RS2Z33 PE=1 SV=1
Length = 290
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G R DLERLF RYG+V VDMK +AF+ D RDA+DA LD +F
Sbjct: 13 LYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRDF--D 70
Query: 117 GRRLRVEWTK 126
G R+ VE+++
Sbjct: 71 GSRITVEFSR 80
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 163 TRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220
TRTRDLER F YG++ V ++R++AFV++ DA A + I+VE++
Sbjct: 22 TRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRDFDGSRITVEFS 79
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 78/191 (40%), Gaps = 19/191 (9%)
Query: 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-------GFAFIYMDDERDAE 102
+A I+ N + + + DL++LF YG + + ++ GF F+ + A
Sbjct: 228 IKANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAV 287
Query: 103 DAIRGLDRTEFGRKGRRLRV--EWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDP 160
A+ L+ E G+++ V K ER + R + LF+ N D
Sbjct: 288 KAVEELNDKEI--NGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDD 345
Query: 161 YHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDR 213
+ LE F+P+G I S R+ + F FV + E+AT+A+ N +
Sbjct: 346 -TIDSEKLEEEFKPFGTITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGK 404
Query: 214 VISVEYAVRDD 224
+ V A R D
Sbjct: 405 PLYVALAQRKD 415
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 74/176 (42%), Gaps = 32/176 (18%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDAIRGL 108
++ G ++ L +F G+V D V KS G+A++ D E AI L
Sbjct: 54 LYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIEEL 113
Query: 109 DRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDL 168
+ + +GR R+ W++ + RR G G+ +F+ N P + L
Sbjct: 114 NYSPI--EGRPCRIMWSQRDPSARRSGDGN--------------IFIKNLHP-AIDNKAL 156
Query: 169 ERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217
F +GKI+S ++ + F FV YE E A A++ N L DR + V
Sbjct: 157 HDTFSTFGKILSCKVATDDMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFV 212
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 168 LERHFEPYGKIISVRIRRN--------FAFVQYEVQEDATRALDATNMSKLTDRVISVEY 219
L F P G++ S+R+ R+ +A+V Y ED +A++ N S + R + +
Sbjct: 68 LFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIEELNYSPIEGRPCRIMW 127
Query: 220 AVRDDDDRRNG 230
+ RD RR+G
Sbjct: 128 SQRDPSARRSG 138
>sp|Q9FYB7|RSZ32_ARATH Serine/arginine-rich splicing factor RS2Z32 OS=Arabidopsis thaliana
GN=RS2Z32 PE=1 SV=1
Length = 284
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116
++ G R DLERLF RYG+V VDMK +AF+ D RDA+DA LD +F
Sbjct: 13 LYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRDF--D 70
Query: 117 GRRLRVEWTK 126
G R+ VE ++
Sbjct: 71 GSRITVEASR 80
>sp|Q5R7H2|SRSF1_PONAB Serine/arginine-rich splicing factor 1 OS=Pongo abelii GN=SRSF1
PE=2 SV=3
Length = 248
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN-----TRPSKTLFVINFDPYHTRTR 166
++ G RLRVE+ + RG R GGG +R S+ V++ P +
Sbjct: 78 DY--DGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 167 DLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
DL+ H G + + R+ V++ +ED T A+ + +K
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 136 GGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKI--ISVRIRRN---FAFV 190
GG R P+ N ++V N P RT+D+E F YG I I ++ RR FAFV
Sbjct: 3 GGGVIRGPAGNN--DCRIYVGNLPP-DIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFV 59
Query: 191 QYEVQEDATRAL 202
++E DA A+
Sbjct: 60 EFEDPRDAEDAV 71
>sp|Q3YLA6|SRSF1_PIG Serine/arginine-rich splicing factor 1 OS=Sus scrofa GN=SRSF1 PE=2
SV=3
Length = 248
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN-----TRPSKTLFVINFDPYHTRTR 166
++ G RLRVE+ + RG R GGG +R S+ V++ P +
Sbjct: 78 DY--DGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 167 DLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
DL+ H G + + R+ V++ +ED T A+ + +K
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 136 GGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKI--ISVRIRRN---FAFV 190
GG R P+ N ++V N P RT+D+E F YG I I ++ RR FAFV
Sbjct: 3 GGGVIRGPAGNN--DCRIYVGNLPP-DIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFV 59
Query: 191 QYEVQEDATRAL 202
++E DA A+
Sbjct: 60 EFEDPRDAEDAV 71
>sp|Q6PDM2|SRSF1_MOUSE Serine/arginine-rich splicing factor 1 OS=Mus musculus GN=Srsf1
PE=1 SV=3
Length = 248
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN-----TRPSKTLFVINFDPYHTRTR 166
++ G RLRVE+ + RG R GGG +R S+ V++ P +
Sbjct: 78 DY--DGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 167 DLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
DL+ H G + + R+ V++ +ED T A+ + +K
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 136 GGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKI--ISVRIRRN---FAFV 190
GG R P+ N ++V N P RT+D+E F YG I I ++ RR FAFV
Sbjct: 3 GGGVIRGPAGNN--DCRIYVGNLPP-DIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFV 59
Query: 191 QYEVQEDATRAL 202
++E DA A+
Sbjct: 60 EFEDPRDAEDAV 71
>sp|Q07955|SRSF1_HUMAN Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1
PE=1 SV=2
Length = 248
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN-----TRPSKTLFVINFDPYHTRTR 166
++ G RLRVE+ + RG R GGG +R S+ V++ P +
Sbjct: 78 DY--DGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 167 DLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
DL+ H G + + R+ V++ +ED T A+ + +K
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 136 GGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKI--ISVRIRRN---FAFV 190
GG R P+ N ++V N P RT+D+E F YG I I ++ RR FAFV
Sbjct: 3 GGGVIRGPAGNN--DCRIYVGNLPP-DIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFV 59
Query: 191 QYEVQEDATRAL 202
++E DA A+
Sbjct: 60 EFEDPRDAEDAV 71
>sp|Q0VCY7|SRSF1_BOVIN Serine/arginine-rich splicing factor 1 OS=Bos taurus GN=SRSF1 PE=2
SV=1
Length = 248
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-----GFAFIYMDDERDAEDAIRGLDRT 111
I+ GN D R D+E +F +YG + +D+K+ FAF+ +D RDAEDA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 112 EFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTN-----TRPSKTLFVINFDPYHTRTR 166
++ G RLRVE+ + RG R GGG +R S+ V++ P +
Sbjct: 78 DY--DGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 167 DLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKL 210
DL+ H G + + R+ V++ +ED T A+ + +K
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 136 GGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKI--ISVRIRRN---FAFV 190
GG R P+ N ++V N P RT+D+E F YG I I ++ RR FAFV
Sbjct: 3 GGGVIRGPAGNN--DCRIYVGNLPP-DIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFV 59
Query: 191 QYEVQEDATRAL 202
++E DA A+
Sbjct: 60 EFEDPRDAEDAV 71
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 183,539,761
Number of Sequences: 539616
Number of extensions: 9418605
Number of successful extensions: 44491
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 1793
Number of HSP's that attempted gapping in prelim test: 30148
Number of HSP's gapped (non-prelim): 8510
length of query: 425
length of database: 191,569,459
effective HSP length: 120
effective length of query: 305
effective length of database: 126,815,539
effective search space: 38678739395
effective search space used: 38678739395
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)