Query 014384
Match_columns 425
No_of_seqs 442 out of 3284
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 04:36:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014384.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014384hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 3E-29 6.4E-34 243.6 22.1 157 50-225 103-277 (346)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 8.7E-28 1.9E-32 237.2 23.0 214 10-224 45-350 (352)
3 TIGR01648 hnRNP-R-Q heterogene 100.0 2.6E-27 5.7E-32 241.3 23.4 198 11-225 100-309 (578)
4 KOG0117 Heterogeneous nuclear 100.0 1.3E-27 2.8E-32 226.3 15.2 198 10-226 125-334 (506)
5 TIGR01645 half-pint poly-U bin 100.0 5.2E-27 1.1E-31 239.3 20.8 165 52-224 105-285 (612)
6 KOG0148 Apoptosis-promoting RN 99.9 3.3E-27 7.2E-32 210.4 15.5 168 56-226 64-241 (321)
7 KOG0109 RNA-binding protein LA 99.9 1.3E-27 2.8E-32 215.0 11.9 149 54-223 2-150 (346)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 1.7E-26 3.6E-31 228.1 20.0 152 53-223 2-171 (352)
9 TIGR01622 SF-CC1 splicing fact 99.9 1.7E-26 3.7E-31 235.9 20.4 165 50-222 85-265 (457)
10 TIGR01642 U2AF_lg U2 snRNP aux 99.9 6.4E-26 1.4E-30 234.8 21.6 169 52-223 293-502 (509)
11 TIGR01628 PABP-1234 polyadenyl 99.9 2.1E-25 4.6E-30 233.3 18.9 209 11-224 130-365 (562)
12 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 7.2E-25 1.6E-29 224.2 21.7 164 53-223 1-174 (481)
13 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 9.6E-25 2.1E-29 223.3 21.7 168 52-222 273-479 (481)
14 TIGR01642 U2AF_lg U2 snRNP aux 99.9 8.6E-25 1.9E-29 226.4 20.4 170 50-223 171-375 (509)
15 TIGR01628 PABP-1234 polyadenyl 99.9 1.6E-24 3.4E-29 226.8 20.4 199 11-223 43-261 (562)
16 TIGR01622 SF-CC1 splicing fact 99.9 5.4E-24 1.2E-28 217.5 22.7 212 10-223 131-448 (457)
17 KOG0145 RNA-binding protein EL 99.9 1.1E-23 2.3E-28 186.8 16.6 212 11-223 84-358 (360)
18 KOG0131 Splicing factor 3b, su 99.9 3.8E-24 8.2E-29 180.7 12.7 159 51-227 6-181 (203)
19 KOG0106 Alternative splicing f 99.9 3.6E-24 7.8E-29 190.1 13.1 161 54-217 1-165 (216)
20 KOG0144 RNA-binding protein CU 99.9 5.2E-24 1.1E-28 201.1 12.1 162 49-226 29-209 (510)
21 KOG0105 Alternative splicing f 99.9 2.5E-22 5.5E-27 169.7 19.6 158 52-212 4-177 (241)
22 KOG0127 Nucleolar protein fibr 99.9 2.5E-23 5.4E-28 201.5 15.3 168 55-225 6-198 (678)
23 TIGR01648 hnRNP-R-Q heterogene 99.9 1.5E-22 3.2E-27 206.6 17.2 149 51-223 55-222 (578)
24 KOG0145 RNA-binding protein EL 99.9 1.1E-22 2.4E-27 180.4 13.1 154 51-223 38-209 (360)
25 KOG0127 Nucleolar protein fibr 99.9 8.3E-22 1.8E-26 191.0 17.1 167 54-223 117-378 (678)
26 KOG0117 Heterogeneous nuclear 99.9 1E-21 2.2E-26 186.5 16.1 149 52-224 81-249 (506)
27 KOG0110 RNA-binding protein (R 99.9 1.3E-21 2.9E-26 195.5 13.6 159 55-223 516-693 (725)
28 KOG0124 Polypyrimidine tract-b 99.8 1.3E-20 2.8E-25 174.5 6.7 165 52-224 111-291 (544)
29 KOG0144 RNA-binding protein CU 99.8 7.3E-20 1.6E-24 173.2 11.7 212 11-223 77-504 (510)
30 KOG0123 Polyadenylate-binding 99.8 2E-19 4.4E-24 175.8 15.2 143 55-225 2-155 (369)
31 KOG4207 Predicted splicing fac 99.8 1.3E-18 2.7E-23 150.0 17.7 79 145-224 8-94 (256)
32 KOG0123 Polyadenylate-binding 99.8 3.3E-19 7.1E-24 174.4 13.8 196 9-223 36-246 (369)
33 KOG4206 Spliceosomal protein s 99.8 1.4E-18 3E-23 152.9 15.9 167 52-221 7-220 (221)
34 KOG0107 Alternative splicing f 99.8 2.8E-18 6E-23 144.4 17.0 76 52-129 8-86 (195)
35 TIGR01645 half-pint poly-U bin 99.8 4.2E-18 9.2E-23 174.3 21.4 116 10-127 149-283 (612)
36 KOG0147 Transcriptional coacti 99.8 8.7E-20 1.9E-24 178.0 7.1 170 48-223 173-358 (549)
37 KOG0107 Alternative splicing f 99.8 5.3E-18 1.1E-22 142.7 16.3 77 148-225 8-87 (195)
38 KOG0147 Transcriptional coacti 99.8 3.1E-18 6.7E-23 167.3 12.8 169 52-222 276-527 (549)
39 KOG4676 Splicing factor, argin 99.7 2.7E-18 5.8E-23 160.7 5.7 154 54-212 7-215 (479)
40 KOG4205 RNA-binding protein mu 99.7 1.7E-17 3.6E-22 157.0 9.9 158 53-225 5-178 (311)
41 KOG4207 Predicted splicing fac 99.7 8.3E-16 1.8E-20 132.7 18.4 78 50-129 9-94 (256)
42 KOG0146 RNA-binding protein ET 99.7 1.8E-17 3.9E-22 148.0 8.4 173 51-224 16-366 (371)
43 KOG1457 RNA binding protein (c 99.7 2.7E-16 5.8E-21 137.2 14.4 162 49-211 29-274 (284)
44 KOG0120 Splicing factor U2AF, 99.7 5.1E-16 1.1E-20 153.8 11.3 171 51-223 286-492 (500)
45 PLN03134 glycine-rich RNA-bind 99.7 8.9E-16 1.9E-20 131.1 11.4 77 51-129 31-115 (144)
46 KOG0110 RNA-binding protein (R 99.6 1.6E-15 3.4E-20 152.3 12.4 168 51-221 382-596 (725)
47 KOG1548 Transcription elongati 99.6 1.1E-14 2.3E-19 135.1 16.5 172 49-222 129-351 (382)
48 KOG0121 Nuclear cap-binding pr 99.6 7.2E-16 1.6E-20 123.2 7.0 84 45-130 27-118 (153)
49 TIGR01659 sex-lethal sex-letha 99.6 2.6E-15 5.6E-20 146.3 10.6 118 11-129 150-276 (346)
50 KOG1190 Polypyrimidine tract-b 99.6 5.1E-14 1.1E-18 133.0 16.3 166 54-222 297-490 (492)
51 KOG1190 Polypyrimidine tract-b 99.6 4E-14 8.7E-19 133.7 14.8 171 53-223 149-373 (492)
52 KOG1456 Heterogeneous nuclear 99.6 1.9E-13 4E-18 127.7 18.8 173 51-223 117-363 (494)
53 KOG4212 RNA-binding protein hn 99.6 8.9E-14 1.9E-18 132.2 15.5 166 52-220 42-291 (608)
54 PLN03134 glycine-rich RNA-bind 99.6 1.1E-13 2.5E-18 118.1 14.3 79 145-224 29-115 (144)
55 PF00076 RRM_1: RNA recognitio 99.5 1.9E-14 4.1E-19 107.2 8.2 63 57-121 1-70 (70)
56 KOG4211 Splicing factor hnRNP- 99.5 2.1E-13 4.5E-18 132.1 15.3 160 50-220 6-179 (510)
57 PLN03120 nucleic acid binding 99.5 5.9E-14 1.3E-18 128.3 10.1 74 53-129 3-81 (260)
58 KOG0113 U1 small nuclear ribon 99.5 2.8E-12 6.2E-17 116.9 20.2 78 145-223 96-181 (335)
59 KOG0114 Predicted RNA-binding 99.5 8.2E-14 1.8E-18 107.3 7.9 79 49-129 13-96 (124)
60 KOG0113 U1 small nuclear ribon 99.5 2.4E-12 5.1E-17 117.4 17.7 75 51-127 98-180 (335)
61 KOG4212 RNA-binding protein hn 99.5 9.8E-13 2.1E-17 125.2 14.6 72 148-220 534-608 (608)
62 COG0724 RNA-binding proteins ( 99.5 7.5E-13 1.6E-17 125.0 13.8 128 54-184 115-258 (306)
63 PLN03121 nucleic acid binding 99.4 6.2E-13 1.3E-17 119.7 9.9 73 53-128 4-81 (243)
64 KOG0124 Polypyrimidine tract-b 99.4 4E-12 8.7E-17 118.5 15.5 76 49-126 205-288 (544)
65 KOG0122 Translation initiation 99.4 5E-13 1.1E-17 118.6 8.6 74 53-128 188-269 (270)
66 KOG0130 RNA-binding protein RB 99.4 3.9E-13 8.4E-18 108.5 6.3 74 54-129 72-153 (170)
67 KOG0125 Ataxin 2-binding prote 99.4 5.8E-13 1.3E-17 122.8 8.2 77 51-129 93-175 (376)
68 KOG0148 Apoptosis-promoting RN 99.4 1.1E-12 2.5E-17 117.9 9.7 79 49-129 159-239 (321)
69 PF14259 RRM_6: RNA recognitio 99.4 9.9E-13 2.1E-17 98.2 7.9 63 57-121 1-70 (70)
70 PLN03213 repressor of silencin 99.4 8.7E-13 1.9E-17 127.3 9.3 77 50-128 6-88 (759)
71 KOG0109 RNA-binding protein LA 99.4 6.8E-13 1.5E-17 120.4 7.3 76 51-128 75-150 (346)
72 KOG0129 Predicted RNA-binding 99.3 1.4E-11 3E-16 120.4 13.6 163 52-221 257-452 (520)
73 PF00076 RRM_1: RNA recognitio 99.3 4.9E-12 1.1E-16 94.0 8.1 63 153-216 1-70 (70)
74 smart00362 RRM_2 RNA recogniti 99.3 8.6E-12 1.9E-16 92.4 9.1 65 56-122 1-71 (72)
75 KOG1456 Heterogeneous nuclear 99.3 2.9E-11 6.4E-16 113.2 13.9 165 50-223 27-199 (494)
76 KOG0111 Cyclophilin-type pepti 99.3 2.4E-12 5.3E-17 112.3 5.9 79 50-130 6-92 (298)
77 KOG0105 Alternative splicing f 99.3 8.7E-12 1.9E-16 106.1 8.9 74 149-223 5-83 (241)
78 KOG0125 Ataxin 2-binding prote 99.3 5.4E-12 1.2E-16 116.4 8.2 75 147-222 93-173 (376)
79 KOG0130 RNA-binding protein RB 99.3 1.5E-11 3.4E-16 99.3 8.9 80 144-224 66-153 (170)
80 PF13893 RRM_5: RNA recognitio 99.3 1.8E-11 3.9E-16 87.1 8.3 53 71-125 1-56 (56)
81 KOG0126 Predicted RNA-binding 99.3 4.4E-13 9.5E-18 113.8 -0.1 79 49-129 30-116 (219)
82 KOG0112 Large RNA-binding prot 99.3 2.6E-12 5.5E-17 132.3 4.6 155 49-224 367-532 (975)
83 KOG0121 Nuclear cap-binding pr 99.3 1E-11 2.2E-16 99.6 6.8 76 147-223 33-116 (153)
84 KOG0149 Predicted RNA-binding 99.3 9.2E-12 2E-16 110.3 7.0 74 51-127 9-90 (247)
85 cd00590 RRM RRM (RNA recogniti 99.2 4.6E-11 9.9E-16 88.9 9.3 67 56-124 1-74 (74)
86 PLN03120 nucleic acid binding 99.2 4.7E-11 1E-15 109.4 9.8 71 150-222 4-79 (260)
87 smart00360 RRM RNA recognition 99.2 4.2E-11 9.1E-16 88.3 7.9 63 59-123 1-71 (71)
88 KOG0120 Splicing factor U2AF, 99.2 2.5E-11 5.5E-16 120.7 8.2 171 50-224 171-370 (500)
89 KOG0114 Predicted RNA-binding 99.2 2E-10 4.3E-15 88.8 9.6 76 147-223 15-95 (124)
90 PF14259 RRM_6: RNA recognitio 99.2 1.6E-10 3.5E-15 86.1 8.3 63 153-216 1-70 (70)
91 PLN03213 repressor of silencin 99.2 1.1E-10 2.5E-15 112.8 9.0 75 148-223 8-88 (759)
92 KOG0122 Translation initiation 99.1 1.3E-10 2.8E-15 103.4 8.6 75 148-223 187-269 (270)
93 PF13893 RRM_5: RNA recognitio 99.1 3.1E-10 6.7E-15 80.7 8.0 53 168-220 1-56 (56)
94 KOG0132 RNA polymerase II C-te 99.1 1.6E-10 3.5E-15 117.4 8.9 77 51-129 418-496 (894)
95 KOG0108 mRNA cleavage and poly 99.1 1.7E-10 3.7E-15 114.2 8.0 73 55-129 19-99 (435)
96 KOG0415 Predicted peptidyl pro 99.1 1E-10 2.3E-15 108.9 5.8 76 52-129 237-320 (479)
97 PLN03121 nucleic acid binding 99.1 4.7E-10 1E-14 101.3 9.6 72 149-222 4-80 (243)
98 KOG0111 Cyclophilin-type pepti 99.1 7.6E-11 1.6E-15 103.1 4.4 77 147-224 7-91 (298)
99 smart00362 RRM_2 RNA recogniti 99.1 5.3E-10 1.2E-14 82.6 8.1 65 152-217 1-71 (72)
100 KOG4454 RNA binding protein (R 99.0 5.4E-11 1.2E-15 104.0 0.8 140 50-217 5-157 (267)
101 KOG0131 Splicing factor 3b, su 99.0 5.2E-10 1.1E-14 95.4 6.3 74 147-221 6-87 (203)
102 KOG0126 Predicted RNA-binding 99.0 1.3E-10 2.8E-15 98.9 1.4 73 149-222 34-114 (219)
103 cd00590 RRM RRM (RNA recogniti 99.0 2.8E-09 6E-14 79.1 8.6 67 152-219 1-74 (74)
104 KOG0153 Predicted RNA-binding 99.0 1.9E-09 4.2E-14 100.6 8.4 77 50-128 224-303 (377)
105 KOG4660 Protein Mei2, essentia 99.0 5.5E-10 1.2E-14 110.3 4.7 167 50-222 71-249 (549)
106 smart00361 RRM_1 RNA recogniti 98.9 3E-09 6.5E-14 79.3 7.2 53 68-122 2-69 (70)
107 smart00360 RRM RNA recognition 98.9 3E-09 6.5E-14 78.2 7.0 63 155-218 1-71 (71)
108 KOG0149 Predicted RNA-binding 98.9 1.7E-09 3.6E-14 96.1 6.4 73 148-222 10-90 (247)
109 KOG2193 IGF-II mRNA-binding pr 98.9 2.3E-10 4.9E-15 108.9 0.3 148 55-223 2-157 (584)
110 COG0724 RNA-binding proteins ( 98.9 4E-09 8.8E-14 99.3 7.9 72 150-222 115-194 (306)
111 KOG0415 Predicted peptidyl pro 98.8 3.9E-09 8.4E-14 98.5 6.1 79 144-223 233-319 (479)
112 KOG1365 RNA-binding protein Fu 98.8 5.8E-09 1.3E-13 98.3 7.1 165 54-222 161-361 (508)
113 KOG4206 Spliceosomal protein s 98.8 1E-08 2.2E-13 90.9 7.7 78 147-225 6-92 (221)
114 KOG0106 Alternative splicing f 98.8 7.4E-09 1.6E-13 92.6 4.8 74 151-225 2-75 (216)
115 KOG4205 RNA-binding protein mu 98.8 2.4E-08 5.2E-13 95.0 8.2 74 53-129 96-177 (311)
116 KOG0146 RNA-binding protein ET 98.7 8.6E-09 1.9E-13 92.9 4.8 78 50-129 281-366 (371)
117 KOG4661 Hsp27-ERE-TATA-binding 98.7 1.9E-08 4.1E-13 99.1 7.0 76 53-130 404-487 (940)
118 KOG0108 mRNA cleavage and poly 98.7 2.3E-08 4.9E-13 99.3 7.6 74 151-225 19-100 (435)
119 smart00361 RRM_1 RNA recogniti 98.7 3.5E-08 7.7E-13 73.5 6.7 53 165-217 2-69 (70)
120 KOG4208 Nucleolar RNA-binding 98.7 3.3E-08 7.1E-13 86.3 7.3 78 49-128 44-130 (214)
121 KOG0132 RNA polymerase II C-te 98.7 3.1E-08 6.8E-13 101.1 7.6 73 150-223 421-495 (894)
122 KOG4210 Nuclear localization s 98.7 1.8E-08 3.9E-13 95.5 5.1 161 52-223 86-264 (285)
123 KOG0128 RNA-binding protein SA 98.7 2.5E-09 5.3E-14 110.3 -1.2 134 53-222 666-814 (881)
124 KOG0151 Predicted splicing reg 98.6 6.3E-08 1.4E-12 98.0 7.6 78 50-129 170-258 (877)
125 KOG4211 Splicing factor hnRNP- 98.6 3.1E-07 6.8E-12 89.8 11.7 161 52-217 101-352 (510)
126 KOG0533 RRM motif-containing p 98.6 1.4E-07 3E-12 86.4 8.2 75 52-128 81-162 (243)
127 KOG4661 Hsp27-ERE-TATA-binding 98.6 1.2E-07 2.5E-12 93.7 7.7 76 148-224 403-486 (940)
128 PF04059 RRM_2: RNA recognitio 98.6 3.8E-07 8.2E-12 71.7 8.3 73 55-127 2-86 (97)
129 KOG0153 Predicted RNA-binding 98.5 2.2E-07 4.8E-12 87.0 7.4 77 145-222 223-302 (377)
130 KOG0116 RasGAP SH3 binding pro 98.5 2.6E-07 5.6E-12 91.3 6.8 71 53-126 287-365 (419)
131 KOG4209 Splicing factor RNPS1, 98.4 3.3E-07 7.1E-12 84.1 5.5 77 49-128 96-180 (231)
132 KOG1457 RNA binding protein (c 98.4 1.4E-06 3E-11 77.0 8.4 78 148-226 32-121 (284)
133 KOG0116 RasGAP SH3 binding pro 98.3 4E-06 8.7E-11 83.0 10.8 72 150-223 288-367 (419)
134 KOG4208 Nucleolar RNA-binding 98.3 2.2E-06 4.9E-11 75.0 7.7 76 147-223 46-130 (214)
135 KOG4676 Splicing factor, argin 98.3 4E-07 8.6E-12 86.4 2.1 61 52-113 149-213 (479)
136 PF11608 Limkain-b1: Limkain b 98.3 4.1E-06 8.9E-11 62.8 7.0 71 55-129 3-78 (90)
137 PF11608 Limkain-b1: Limkain b 98.2 6.6E-06 1.4E-10 61.7 7.3 71 151-224 3-78 (90)
138 KOG4454 RNA binding protein (R 98.2 6.3E-07 1.4E-11 78.9 1.8 76 146-222 5-86 (267)
139 KOG4660 Protein Mei2, essentia 98.1 1.6E-06 3.5E-11 86.2 3.8 69 147-216 72-143 (549)
140 KOG0533 RRM motif-containing p 98.1 8.8E-06 1.9E-10 74.7 8.2 76 148-224 81-163 (243)
141 KOG1365 RNA-binding protein Fu 98.1 4.4E-05 9.6E-10 72.6 12.7 151 50-204 56-225 (508)
142 KOG0226 RNA-binding proteins [ 98.1 3.6E-06 7.8E-11 75.8 4.1 152 55-220 97-267 (290)
143 PF08777 RRM_3: RNA binding mo 98.0 9.8E-06 2.1E-10 65.1 5.9 69 55-123 2-75 (105)
144 PF08777 RRM_3: RNA binding mo 98.0 1.7E-05 3.7E-10 63.7 6.7 69 151-220 2-77 (105)
145 KOG4209 Splicing factor RNPS1, 97.9 2.7E-05 5.9E-10 71.5 7.8 75 147-223 98-180 (231)
146 KOG4307 RNA binding protein RB 97.9 2.2E-05 4.8E-10 79.8 7.4 164 52-220 309-511 (944)
147 KOG0151 Predicted splicing reg 97.9 1.5E-05 3.2E-10 81.2 5.9 73 148-221 172-255 (877)
148 KOG1995 Conserved Zn-finger pr 97.9 8.5E-06 1.8E-10 77.2 3.8 78 50-129 62-155 (351)
149 KOG0226 RNA-binding proteins [ 97.9 2E-05 4.2E-10 71.2 5.3 75 47-123 183-265 (290)
150 PF04059 RRM_2: RNA recognitio 97.9 8.4E-05 1.8E-09 58.5 8.1 72 151-223 2-87 (97)
151 COG5175 MOT2 Transcriptional r 97.8 4.7E-05 1E-09 71.2 6.2 70 55-126 115-201 (480)
152 PF14605 Nup35_RRM_2: Nup53/35 97.8 5.8E-05 1.2E-09 52.6 5.2 50 55-105 2-53 (53)
153 KOG0129 Predicted RNA-binding 97.7 0.00012 2.6E-09 72.5 8.8 73 48-123 364-449 (520)
154 KOG0112 Large RNA-binding prot 97.7 3.9E-05 8.5E-10 80.3 5.0 117 10-129 413-532 (975)
155 KOG2416 Acinus (induces apopto 97.7 3.1E-05 6.8E-10 77.5 4.1 77 52-128 442-522 (718)
156 KOG1548 Transcription elongati 97.6 0.00018 3.9E-09 67.8 6.9 77 147-224 131-222 (382)
157 KOG1855 Predicted RNA-binding 97.5 5.3E-05 1.2E-09 73.2 3.0 64 50-113 227-311 (484)
158 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.0003 6.4E-09 49.0 5.4 50 151-202 2-53 (53)
159 KOG2202 U2 snRNP splicing fact 97.5 6.4E-05 1.4E-09 68.2 2.3 58 69-128 83-148 (260)
160 KOG0128 RNA-binding protein SA 97.4 6.7E-06 1.4E-10 85.5 -4.7 154 52-215 569-739 (881)
161 PF05172 Nup35_RRM: Nup53/35/4 97.4 0.00056 1.2E-08 54.2 7.1 70 54-127 6-91 (100)
162 KOG3152 TBP-binding protein, a 97.3 0.00015 3.2E-09 65.8 2.9 62 53-114 73-154 (278)
163 PF08675 RNA_bind: RNA binding 97.3 0.0011 2.3E-08 50.0 6.5 57 53-110 8-64 (87)
164 KOG2314 Translation initiation 97.3 0.00057 1.2E-08 68.3 6.6 76 50-126 54-142 (698)
165 COG5175 MOT2 Transcriptional r 97.2 0.00068 1.5E-08 63.6 6.5 77 147-223 111-203 (480)
166 KOG4307 RNA binding protein RB 97.2 0.00083 1.8E-08 68.7 7.3 70 53-124 866-943 (944)
167 PF08952 DUF1866: Domain of un 97.1 0.0018 4E-08 54.4 7.4 56 69-127 51-106 (146)
168 PF15023 DUF4523: Protein of u 97.1 0.002 4.4E-08 53.4 7.3 76 48-126 80-160 (166)
169 PF08952 DUF1866: Domain of un 97.1 0.0025 5.4E-08 53.6 7.6 77 145-222 22-106 (146)
170 KOG4210 Nuclear localization s 97.0 0.00035 7.6E-09 66.5 2.4 75 52-129 182-265 (285)
171 KOG1995 Conserved Zn-finger pr 96.9 0.00069 1.5E-08 64.5 3.4 77 147-224 63-155 (351)
172 KOG2314 Translation initiation 96.9 0.0023 5E-08 64.2 6.7 69 150-219 58-140 (698)
173 KOG0115 RNA-binding protein p5 96.9 0.0025 5.5E-08 57.9 6.3 97 100-222 6-113 (275)
174 KOG2202 U2 snRNP splicing fact 96.9 0.00042 9.2E-09 63.0 1.3 57 166-222 83-147 (260)
175 KOG1855 Predicted RNA-binding 96.7 0.0017 3.7E-08 63.0 4.1 61 147-208 228-309 (484)
176 KOG1996 mRNA splicing factor [ 96.7 0.0048 1E-07 57.1 6.5 74 53-128 280-367 (378)
177 PF05172 Nup35_RRM: Nup53/35/4 96.6 0.007 1.5E-07 48.0 6.6 68 150-220 6-89 (100)
178 KOG2416 Acinus (induces apopto 96.6 0.002 4.3E-08 64.9 4.1 78 145-223 439-522 (718)
179 KOG1996 mRNA splicing factor [ 96.6 0.0047 1E-07 57.1 5.9 58 165-222 300-366 (378)
180 KOG3152 TBP-binding protein, a 96.4 0.0021 4.6E-08 58.4 2.5 64 150-214 74-157 (278)
181 KOG2135 Proteins containing th 96.3 0.0029 6.3E-08 62.2 3.2 60 162-222 384-445 (526)
182 KOG2253 U1 snRNP complex, subu 96.3 0.0025 5.4E-08 65.2 2.8 73 50-125 36-108 (668)
183 PF10309 DUF2414: Protein of u 96.3 0.025 5.4E-07 40.5 6.9 54 54-108 5-62 (62)
184 KOG4849 mRNA cleavage factor I 95.9 0.0074 1.6E-07 57.1 3.5 71 52-124 78-158 (498)
185 PF10309 DUF2414: Protein of u 95.6 0.056 1.2E-06 38.7 6.4 53 151-205 6-62 (62)
186 KOG2135 Proteins containing th 95.6 0.008 1.7E-07 59.3 2.7 74 53-129 371-447 (526)
187 KOG2591 c-Mpl binding protein, 95.5 0.034 7.4E-07 55.9 6.7 69 150-219 175-248 (684)
188 PF03880 DbpA: DbpA RNA bindin 95.2 0.1 2.2E-06 38.9 7.2 59 64-125 11-74 (74)
189 KOG4574 RNA-binding protein (c 95.2 0.015 3.2E-07 61.2 3.1 75 55-129 299-375 (1007)
190 PF08675 RNA_bind: RNA binding 95.0 0.13 2.8E-06 38.9 6.9 55 151-207 10-64 (87)
191 PF15023 DUF4523: Protein of u 94.9 0.17 3.8E-06 42.2 7.9 75 146-221 82-160 (166)
192 PF04847 Calcipressin: Calcipr 94.7 0.098 2.1E-06 46.4 6.7 61 67-129 8-72 (184)
193 PF03467 Smg4_UPF3: Smg-4/UPF3 94.7 0.031 6.7E-07 49.4 3.5 77 52-128 5-98 (176)
194 PF03880 DbpA: DbpA RNA bindin 94.6 0.15 3.2E-06 38.1 6.5 59 161-220 11-74 (74)
195 KOG4849 mRNA cleavage factor I 94.6 0.032 6.9E-07 52.9 3.4 70 149-219 79-158 (498)
196 KOG2068 MOT2 transcription fac 94.3 0.015 3.2E-07 55.3 0.5 71 55-127 78-162 (327)
197 KOG2193 IGF-II mRNA-binding pr 93.9 0.061 1.3E-06 52.4 3.9 72 151-223 2-76 (584)
198 KOG2591 c-Mpl binding protein, 93.8 0.09 2E-06 53.0 5.0 56 54-109 175-233 (684)
199 PF07576 BRAP2: BRCA1-associat 93.7 0.29 6.2E-06 39.6 6.9 60 54-113 13-79 (110)
200 KOG0115 RNA-binding protein p5 93.4 0.068 1.5E-06 48.9 3.0 70 55-124 32-110 (275)
201 KOG4285 Mitotic phosphoprotein 93.2 0.42 9.1E-06 44.8 7.9 73 54-129 197-271 (350)
202 KOG2068 MOT2 transcription fac 93.1 0.032 7E-07 53.0 0.5 74 150-223 77-163 (327)
203 PF10567 Nab6_mRNP_bdg: RNA-re 92.5 4.5 9.8E-05 38.1 13.6 155 50-207 11-213 (309)
204 KOG2253 U1 snRNP complex, subu 92.5 0.091 2E-06 54.2 2.9 76 142-219 32-107 (668)
205 KOG0804 Cytoplasmic Zn-finger 92.5 0.56 1.2E-05 46.5 8.0 63 51-113 71-140 (493)
206 KOG4285 Mitotic phosphoprotein 92.3 0.38 8.2E-06 45.1 6.3 67 150-219 197-266 (350)
207 PF11767 SET_assoc: Histone ly 92.3 0.56 1.2E-05 34.1 6.0 56 161-217 10-65 (66)
208 PF04847 Calcipressin: Calcipr 92.2 0.29 6.2E-06 43.5 5.3 58 165-222 9-70 (184)
209 PF07576 BRAP2: BRCA1-associat 92.1 3.5 7.6E-05 33.3 11.1 70 151-220 13-92 (110)
210 PF11767 SET_assoc: Histone ly 91.7 0.93 2E-05 33.0 6.6 56 64-122 10-65 (66)
211 PF07292 NID: Nmi/IFP 35 domai 91.1 0.45 9.6E-06 36.7 4.6 74 91-173 1-74 (88)
212 KOG2318 Uncharacterized conser 90.6 1 2.2E-05 46.0 7.9 77 146-222 170-307 (650)
213 KOG2318 Uncharacterized conser 89.6 1.7 3.7E-05 44.5 8.5 77 50-126 170-306 (650)
214 PF14111 DUF4283: Domain of un 88.0 0.34 7.5E-06 41.4 2.2 107 65-184 28-138 (153)
215 KOG2891 Surface glycoprotein [ 86.9 0.59 1.3E-05 43.3 3.1 101 83-184 69-194 (445)
216 KOG4574 RNA-binding protein (c 86.6 0.39 8.5E-06 51.0 2.0 62 162-223 309-374 (1007)
217 PF03467 Smg4_UPF3: Smg-4/UPF3 85.7 2 4.2E-05 38.0 5.7 73 149-222 6-97 (176)
218 KOG0804 Cytoplasmic Zn-finger 83.6 3.6 7.8E-05 41.0 6.9 62 150-212 74-142 (493)
219 PRK11634 ATP-dependent RNA hel 80.8 29 0.00064 37.1 13.2 61 161-222 497-562 (629)
220 KOG4019 Calcineurin-mediated s 77.6 2.7 5.8E-05 36.7 3.4 74 53-128 9-90 (193)
221 KOG4410 5-formyltetrahydrofola 76.7 3.4 7.4E-05 38.6 4.0 51 50-100 326-379 (396)
222 KOG0835 Cyclin L [General func 76.2 12 0.00025 36.0 7.5 17 89-105 174-190 (367)
223 KOG4483 Uncharacterized conser 75.5 6.3 0.00014 38.6 5.6 55 53-108 390-446 (528)
224 KOG2891 Surface glycoprotein [ 72.6 1.9 4.1E-05 40.1 1.3 61 53-113 148-247 (445)
225 KOG4019 Calcineurin-mediated s 67.0 3.9 8.5E-05 35.7 2.0 73 151-223 11-90 (193)
226 KOG4008 rRNA processing protei 63.2 4.8 0.0001 36.7 1.9 47 51-97 37-83 (261)
227 KOG1295 Nonsense-mediated deca 61.2 8.5 0.00018 37.7 3.3 62 52-113 5-77 (376)
228 KOG2295 C2H2 Zn-finger protein 60.1 1.9 4E-05 44.0 -1.4 62 52-113 229-298 (648)
229 PF03468 XS: XS domain; Inter 57.2 11 0.00024 30.8 2.9 39 67-105 30-74 (116)
230 PF15513 DUF4651: Domain of un 55.8 21 0.00045 25.5 3.7 19 68-86 8-26 (62)
231 PRK10629 EnvZ/OmpR regulon mod 53.0 1.1E+02 0.0024 25.4 8.2 72 53-126 34-109 (127)
232 COG5638 Uncharacterized conser 52.7 59 0.0013 32.2 7.4 75 51-125 143-295 (622)
233 COG5638 Uncharacterized conser 50.3 69 0.0015 31.8 7.4 75 146-220 142-295 (622)
234 PRK10629 EnvZ/OmpR regulon mod 47.2 1.2E+02 0.0026 25.1 7.6 59 163-221 50-109 (127)
235 KOG0670 U4/U6-associated splic 46.9 39 0.00084 35.0 5.4 6 248-253 113-118 (752)
236 KOG0835 Cyclin L [General func 44.7 43 0.00093 32.3 5.1 10 76-85 130-139 (367)
237 KOG4213 RNA-binding protein La 42.8 26 0.00057 30.7 3.0 41 66-106 118-168 (205)
238 PF12481 DUF3700: Aluminium in 42.4 64 0.0014 29.4 5.6 53 3-79 44-96 (228)
239 KOG4483 Uncharacterized conser 40.2 48 0.001 32.7 4.7 57 147-204 388-446 (528)
240 KOG3580 Tight junction protein 39.7 1.7E+02 0.0038 30.7 8.7 35 150-184 61-95 (1027)
241 COG0150 PurM Phosphoribosylami 39.4 18 0.00039 35.1 1.8 46 66-111 273-322 (345)
242 KOG4410 5-formyltetrahydrofola 37.5 1E+02 0.0023 29.1 6.2 46 149-195 329-377 (396)
243 PRK14548 50S ribosomal protein 36.6 1.1E+02 0.0024 23.3 5.4 50 57-106 23-79 (84)
244 PF07292 NID: Nmi/IFP 35 domai 36.0 16 0.00034 28.3 0.6 26 51-76 49-74 (88)
245 COG4314 NosL Predicted lipopro 34.3 40 0.00087 28.8 2.8 105 9-113 37-151 (176)
246 smart00703 NRF N-terminal doma 34.0 67 0.0015 25.7 4.1 25 56-80 71-96 (110)
247 PF14111 DUF4283: Domain of un 34.0 79 0.0017 26.5 4.8 32 56-87 106-138 (153)
248 cd00027 BRCT Breast Cancer Sup 33.4 1.4E+02 0.0031 20.2 5.6 48 55-102 2-49 (72)
249 TIGR03636 L23_arch archaeal ri 33.0 1.5E+02 0.0032 22.2 5.4 49 57-105 16-71 (77)
250 PF02714 DUF221: Domain of unk 32.9 45 0.00098 32.2 3.5 32 91-126 1-32 (325)
251 COG1533 SplB DNA repair photol 32.7 67 0.0014 30.9 4.5 69 8-80 41-117 (297)
252 COG0018 ArgS Arginyl-tRNA synt 32.6 1.3E+02 0.0029 31.8 7.0 102 61-183 53-162 (577)
253 PF09902 DUF2129: Uncharacteri 32.5 1E+02 0.0022 22.8 4.4 39 171-210 16-54 (71)
254 PF01782 RimM: RimM N-terminal 31.6 86 0.0019 23.5 4.2 33 80-113 46-78 (84)
255 PF06804 Lipoprotein_18: NlpB/ 31.2 1.8E+02 0.0039 28.0 7.2 99 53-173 197-296 (303)
256 PF14893 PNMA: PNMA 31.0 55 0.0012 32.0 3.6 75 49-128 13-97 (331)
257 PRK08559 nusG transcription an 30.8 1.3E+02 0.0029 25.7 5.6 31 81-111 36-69 (153)
258 PF09869 DUF2096: Uncharacteri 30.5 2.2E+02 0.0047 24.8 6.6 57 50-109 108-164 (169)
259 PF03439 Spt5-NGN: Early trans 30.5 89 0.0019 23.7 4.0 33 81-113 34-69 (84)
260 PF09902 DUF2129: Uncharacteri 30.3 1.1E+02 0.0024 22.6 4.2 50 56-113 5-54 (71)
261 KOG2187 tRNA uracil-5-methyltr 30.1 28 0.00061 35.8 1.5 69 59-129 30-102 (534)
262 PF00403 HMA: Heavy-metal-asso 29.7 1.9E+02 0.0041 19.9 6.1 51 56-106 1-57 (62)
263 PRK11679 lipoprotein; Provisio 28.3 3.5E+02 0.0077 26.6 8.8 47 54-100 239-286 (346)
264 PF08544 GHMP_kinases_C: GHMP 28.2 2.3E+02 0.0049 20.7 6.1 40 69-109 37-80 (85)
265 PF11411 DNA_ligase_IV: DNA li 27.6 44 0.00096 21.1 1.5 17 64-80 19-35 (36)
266 PF08734 GYD: GYD domain; Int 26.9 2.3E+02 0.0049 21.8 5.8 42 68-109 22-68 (91)
267 PF08734 GYD: GYD domain; Int 26.6 1.9E+02 0.0042 22.2 5.4 42 165-206 22-68 (91)
268 PF02714 DUF221: Domain of unk 26.3 75 0.0016 30.6 3.8 35 188-224 1-35 (325)
269 PF11823 DUF3343: Protein of u 26.3 79 0.0017 23.1 3.0 25 89-113 2-26 (73)
270 COG2608 CopZ Copper chaperone 25.4 2.7E+02 0.0058 20.2 5.7 44 54-97 3-48 (71)
271 PF00313 CSD: 'Cold-shock' DNA 25.1 48 0.001 23.6 1.6 21 79-99 3-23 (66)
272 PRK06369 nac nascent polypepti 24.5 3.6E+02 0.0077 22.0 6.6 31 162-208 74-104 (115)
273 KOG4840 Predicted hydrolases o 24.2 2.6E+02 0.0056 25.9 6.3 73 150-222 37-117 (299)
274 PRK02302 hypothetical protein; 24.0 1.6E+02 0.0035 22.8 4.3 38 171-209 22-59 (89)
275 PRK15464 cold shock-like prote 24.0 49 0.0011 24.3 1.5 20 78-97 6-25 (70)
276 PRK02886 hypothetical protein; 23.9 1.6E+02 0.0035 22.6 4.3 39 171-210 20-58 (87)
277 PF03439 Spt5-NGN: Early trans 23.5 1.3E+02 0.0029 22.7 3.9 32 177-208 33-67 (84)
278 PRK02886 hypothetical protein; 23.5 1.6E+02 0.0036 22.6 4.2 52 54-113 7-58 (87)
279 PRK09937 stationary phase/star 23.4 56 0.0012 24.2 1.7 19 79-97 4-22 (74)
280 KOG4008 rRNA processing protei 23.4 50 0.0011 30.3 1.7 36 148-184 38-73 (261)
281 TIGR02381 cspD cold shock doma 23.1 56 0.0012 23.7 1.7 49 78-128 3-56 (68)
282 CHL00123 rps6 ribosomal protei 23.1 1.7E+02 0.0036 22.9 4.5 49 56-106 10-80 (97)
283 PF10915 DUF2709: Protein of u 23.1 1.4E+02 0.003 26.6 4.2 63 93-176 47-117 (238)
284 PRK02302 hypothetical protein; 23.1 1.7E+02 0.0036 22.7 4.2 53 53-113 8-60 (89)
285 PF11823 DUF3343: Protein of u 22.8 1.1E+02 0.0024 22.3 3.2 27 186-212 2-28 (73)
286 PRK14998 cold shock-like prote 22.6 60 0.0013 24.0 1.8 20 78-97 3-22 (73)
287 smart00457 MACPF membrane-atta 22.1 1.5E+02 0.0033 26.2 4.7 28 59-86 30-59 (194)
288 PRK11634 ATP-dependent RNA hel 21.7 3.3E+02 0.0073 29.2 7.8 69 54-126 486-561 (629)
289 PRK09507 cspE cold shock prote 21.6 59 0.0013 23.7 1.5 20 78-97 5-24 (69)
290 PRK10943 cold shock-like prote 20.9 62 0.0013 23.6 1.5 20 78-97 5-24 (69)
291 cd04458 CSP_CDS Cold-Shock Pro 20.6 70 0.0015 22.6 1.7 20 78-97 2-21 (65)
292 PRK15463 cold shock-like prote 20.5 64 0.0014 23.6 1.5 20 78-97 6-25 (70)
293 cd06405 PB1_Mekk2_3 The PB1 do 20.4 3.7E+02 0.0081 20.1 7.0 48 160-207 17-65 (79)
294 KOG0862 Synaptobrevin/VAMP-lik 20.1 66 0.0014 29.1 1.8 32 69-100 89-121 (216)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=3e-29 Score=243.60 Aligned_cols=157 Identities=24% Similarity=0.431 Sum_probs=139.3
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 121 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~ 121 (425)
.....++|||+|||+++|+++|+++|..||+|+.|+|. +|||||+|.++++|+.||+.|||..| .++.|+
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l--~gr~i~ 180 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITV--RNKRLK 180 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCcc--CCceee
Confidence 44567899999999999999999999999999999883 59999999999999999999999999 899999
Q ss_pred EEEeccccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEc
Q 014384 122 VEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYE 193 (425)
Q Consensus 122 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~ 193 (425)
|.|+..... ....++|||+|| +..+++++|+++|++||.|+.|.|. ++||||+|.
T Consensus 181 V~~a~p~~~----------------~~~~~~lfV~nL-p~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~ 243 (346)
T TIGR01659 181 VSYARPGGE----------------SIKDTNLYVTNL-PRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFN 243 (346)
T ss_pred eeccccccc----------------ccccceeEEeCC-CCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEEC
Confidence 999865321 123468999999 8899999999999999999999885 479999999
Q ss_pred CHHHHHHHHHHcCCCccCC--eEEEEEEeeeCCC
Q 014384 194 VQEDATRALDATNMSKLTD--RVISVEYAVRDDD 225 (425)
Q Consensus 194 ~~~~A~~A~~~l~g~~~~g--~~i~v~~a~~~~~ 225 (425)
+.++|++||+.||+..|.| ..|.|.++.....
T Consensus 244 ~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 244 KREEAQEAISALNNVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred CHHHHHHHHHHhCCCccCCCceeEEEEECCcccc
Confidence 9999999999999998876 6899999887543
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=8.7e-28 Score=237.23 Aligned_cols=214 Identities=19% Similarity=0.250 Sum_probs=156.1
Q ss_pred eeeEEEEeCCCCcccccccCCcceeecccccccchhhhhhhcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE---
Q 014384 10 CHYLLIVYSHSVWPVQKKYLPRRLYVLGFRRSHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--- 86 (425)
Q Consensus 10 ~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--- 86 (425)
..||||.|.....+..+...-....+....................+|||+|||..+++++|.++|..||.|..+.+
T Consensus 45 ~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~ 124 (352)
T TIGR01661 45 LGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSD 124 (352)
T ss_pred ceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEec
Confidence 35999999987776665532111211111111100011112334678999999999999999999999999998887
Q ss_pred -----eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEeccccCCCCC------------CC-C--CC-------
Q 014384 87 -----KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRP------------GG-G--SS------- 139 (425)
Q Consensus 87 -----~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~~~~~~~------------~~-~--~~------- 139 (425)
.+|||||+|.+.++|+.|+..|||..+...+..|.|.|+......... .. . ..
T Consensus 125 ~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (352)
T TIGR01661 125 NVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAG 204 (352)
T ss_pred CCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccC
Confidence 278999999999999999999999988434478899988643310000 00 0 00
Q ss_pred ---------------------------------------CCC---------------CCCCCCCCcEEEEEcCCCCCCCH
Q 014384 140 ---------------------------------------ARR---------------PSTNTRPSKTLFVINFDPYHTRT 165 (425)
Q Consensus 140 ---------------------------------------~~~---------------~~~~~~~~~~l~V~nl~p~~~~~ 165 (425)
... .........+|||+|| |..+++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL-~~~~~e 283 (352)
T TIGR01661 205 IGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNL-SPDTDE 283 (352)
T ss_pred CCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCC-CCCCCH
Confidence 000 0000122347999999 788999
Q ss_pred HHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeCC
Q 014384 166 RDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDD 224 (425)
Q Consensus 166 ~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~ 224 (425)
++|.++|++||.|..|.|. +|||||+|.+.++|..|+..|||..|+|+.|.|.|+..+.
T Consensus 284 ~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 284 TVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred HHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCC
Confidence 9999999999999999985 7899999999999999999999999999999999987753
No 3
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=2.6e-27 Score=241.26 Aligned_cols=198 Identities=24% Similarity=0.321 Sum_probs=153.6
Q ss_pred eeEEEEeCCCCcccccccCCcceeecccccccchhhhhhhcCCCceEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEE---
Q 014384 11 HYLLIVYSHSVWPVQKKYLPRRLYVLGFRRSHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGK-VDRVDM--- 86 (425)
Q Consensus 11 ~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~-V~~v~i--- 86 (425)
.||||.|.+...+..+...-....+..-.. .........++|||+|||.++|+++|.++|.+++. |+++.+
T Consensus 100 GfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~-----l~V~~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~ 174 (578)
T TIGR01648 100 GYAFVTFCGKEEAKEAVKLLNNYEIRPGRL-----LGVCISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHS 174 (578)
T ss_pred ceEEEEeCCHHHHHHHHHHcCCCeecCCcc-----ccccccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEecc
Confidence 489999998776555543221111110000 00112345789999999999999999999999864 444443
Q ss_pred ------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEeccccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCC
Q 014384 87 ------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDP 160 (425)
Q Consensus 87 ------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p 160 (425)
++|||||+|.++++|..|+..|+...+.+.|+.|.|+|+...... .........+|||+|| +
T Consensus 175 ~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~-----------d~~~~~~~k~LfVgNL-~ 242 (578)
T TIGR01648 175 AADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEV-----------DEDVMAKVKILYVRNL-M 242 (578)
T ss_pred ccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccccc-----------cccccccccEEEEeCC-C
Confidence 279999999999999999988865332227999999999865421 1122344579999999 7
Q ss_pred CCCCHHHHHhhhccC--CcEEEEEEeccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeCCC
Q 014384 161 YHTRTRDLERHFEPY--GKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDD 225 (425)
Q Consensus 161 ~~~~~~~L~~~f~~~--G~v~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~~ 225 (425)
..+++++|+++|++| |.|+.|.+.++||||+|.+.++|.+|++.||+.+|+|+.|.|.|++....
T Consensus 243 ~~~tee~L~~~F~~f~~G~I~rV~~~rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 243 TTTTEEIIEKSFSEFKPGKVERVKKIRDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred CCCCHHHHHHHHHhcCCCceEEEEeecCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCc
Confidence 899999999999999 99999999999999999999999999999999999999999999987643
No 4
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=1.3e-27 Score=226.35 Aligned_cols=198 Identities=22% Similarity=0.317 Sum_probs=162.9
Q ss_pred eeeEEEEeCCCCcccccc--cCCcceeecccccccchhhhhhhcCCCceEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEE
Q 014384 10 CHYLLIVYSHSVWPVQKK--YLPRRLYVLGFRRSHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGK-VDRVDM 86 (425)
Q Consensus 10 ~~y~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~-V~~v~i 86 (425)
-.|+||.|.+...+..+. +..-.|....++..+ ....++.|||||||.+.++++|.+.|++.++ |++|.|
T Consensus 125 RGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc-------~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdViv 197 (506)
T KOG0117|consen 125 RGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC-------VSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIV 197 (506)
T ss_pred cceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE-------EeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEE
Confidence 359999998876554444 222233333332222 4467899999999999999999999999986 677777
Q ss_pred ---------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEeccccCCCCCCCCCCCCCCCCCCCCCcEEEEEc
Q 014384 87 ---------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVIN 157 (425)
Q Consensus 87 ---------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~n 157 (425)
++|||||+|++...|..|...|-.-.|.+.|..|.|+||.+.. ..........+.|||.|
T Consensus 198 y~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~-----------e~ded~ms~VKvLYVRN 266 (506)
T KOG0117|consen 198 YPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEE-----------EPDEDTMSKVKVLYVRN 266 (506)
T ss_pred ecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCccc-----------CCChhhhhheeeeeeec
Confidence 3899999999999999999876554444489999999999876 33334556678999999
Q ss_pred CCCCCCCHHHHHhhhccCCcEEEEEEeccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeCCCC
Q 014384 158 FDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDD 226 (425)
Q Consensus 158 l~p~~~~~~~L~~~f~~~G~v~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~~~ 226 (425)
| +..+|++.|+++|.+||.|..|..++.||||.|.+.++|.+|++.|||++|+|..|.|.+|++....
T Consensus 267 L-~~~tTeE~lk~~F~~~G~veRVkk~rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 267 L-MESTTEETLKKLFNEFGKVERVKKPRDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred c-chhhhHHHHHHHHHhccceEEeecccceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhh
Confidence 9 8999999999999999999999999999999999999999999999999999999999999987543
No 5
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.95 E-value=5.2e-27 Score=239.32 Aligned_cols=165 Identities=18% Similarity=0.415 Sum_probs=140.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEE
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 123 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~ 123 (425)
...++|||+||++.+|+++|+++|.+||.|..|.| ++|||||+|.+.++|..|+..|||..| .|+.|.|.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i--~GR~IkV~ 182 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQML--GGRNIKVG 182 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEE--ecceeeec
Confidence 45689999999999999999999999999999998 489999999999999999999999999 89999998
Q ss_pred EeccccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCH
Q 014384 124 WTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQ 195 (425)
Q Consensus 124 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~ 195 (425)
+........... ...........+|||+|| +..+++++|+++|+.||.|..|.|. +|||||+|.+.
T Consensus 183 rp~~~p~a~~~~-----~~~~~~~~~~~rLfVgnL-p~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~ 256 (612)
T TIGR01645 183 RPSNMPQAQPII-----DMVQEEAKKFNRIYVASV-HPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNL 256 (612)
T ss_pred cccccccccccc-----ccccccccccceEEeecC-CCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCH
Confidence 654332110000 001112234579999999 7889999999999999999999985 57999999999
Q ss_pred HHHHHHHHHcCCCccCCeEEEEEEeeeCC
Q 014384 196 EDATRALDATNMSKLTDRVISVEYAVRDD 224 (425)
Q Consensus 196 ~~A~~A~~~l~g~~~~g~~i~v~~a~~~~ 224 (425)
++|.+|++.||+..|+|+.|.|.++..+.
T Consensus 257 e~A~kAI~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 257 QSQSEAIASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred HHHHHHHHHhCCCeeCCeEEEEEecCCCc
Confidence 99999999999999999999999988653
No 6
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=3.3e-27 Score=210.43 Aligned_cols=168 Identities=20% Similarity=0.426 Sum_probs=136.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEecc
Q 014384 56 PIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKH 127 (425)
Q Consensus 56 ~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~ 127 (425)
.|||+.|.+.++.++|++.|.+||+|.+++| +|||+||.|...++|+.||..|||.-| .++.|+..||.-
T Consensus 64 hvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl--G~R~IRTNWATR 141 (321)
T KOG0148|consen 64 HVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWL--GRRTIRTNWATR 141 (321)
T ss_pred eEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeee--ccceeecccccc
Confidence 4667777777777777777777777666665 389999999999999999999999999 599999999987
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--ccEEEEEEcCHHHHHHHHHHc
Q 014384 128 ERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDAT 205 (425)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--~g~afV~f~~~~~A~~A~~~l 205 (425)
+....+...-.....-....+.+++|||+|+ +..+++++|++.|..||.|.+|++. +||+||.|.+.|.|..||..|
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I-~~~lte~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~tkEaAahAIv~m 220 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNI-ASGLTEDLMRQTFSPFGPIQEVRVFKDQGYAFVRFETKEAAAHAIVQM 220 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCc-CccccHHHHHHhcccCCcceEEEEecccceEEEEecchhhHHHHHHHh
Confidence 6632222111111122455677899999999 6678899999999999999999996 789999999999999999999
Q ss_pred CCCccCCeEEEEEEeeeCCCC
Q 014384 206 NMSKLTDRVISVEYAVRDDDD 226 (425)
Q Consensus 206 ~g~~~~g~~i~v~~a~~~~~~ 226 (425)
|+++|.|..+++.|.++....
T Consensus 221 Nntei~G~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 221 NNTEIGGQLVRCSWGKEGDDG 241 (321)
T ss_pred cCceeCceEEEEeccccCCCC
Confidence 999999999999998886543
No 7
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.95 E-value=1.3e-27 Score=215.01 Aligned_cols=149 Identities=30% Similarity=0.539 Sum_probs=141.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEeccccCCCC
Q 014384 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRR 133 (425)
Q Consensus 54 ~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~~~~~~ 133 (425)
+-+|||||||..+++.+|+.||++||+|.+|.|-|.||||..++...|+.||..|||..| +|..|+|+-++.+.
T Consensus 2 ~~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKNYgFVHiEdktaaedairNLhgYtL--hg~nInVeaSksKs---- 75 (346)
T KOG0109|consen 2 PVKLFIGNLPREATEQELRSLFEQYGKVLECDIVKNYGFVHIEDKTAAEDAIRNLHGYTL--HGVNINVEASKSKS---- 75 (346)
T ss_pred ccchhccCCCcccchHHHHHHHHhhCceEeeeeecccceEEeecccccHHHHhhccccee--cceEEEEEeccccC----
Confidence 357999999999999999999999999999999999999999999999999999999999 99999999887653
Q ss_pred CCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEeccEEEEEEcCHHHHHHHHHHcCCCccCCe
Q 014384 134 PGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDR 213 (425)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 213 (425)
.+.++|+|+|| ...++.++|+..|++||+|.+|.|.++|+||.|.-.++|..|+..|++++|.|+
T Consensus 76 --------------k~stkl~vgNi-s~tctn~ElRa~fe~ygpviecdivkdy~fvh~d~~eda~~air~l~~~~~~gk 140 (346)
T KOG0109|consen 76 --------------KASTKLHVGNI-SPTCTNQELRAKFEKYGPVIECDIVKDYAFVHFDRAEDAVEAIRGLDNTEFQGK 140 (346)
T ss_pred --------------CCccccccCCC-CccccCHHHhhhhcccCCceeeeeecceeEEEEeeccchHHHHhcccccccccc
Confidence 45689999999 788889999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeeC
Q 014384 214 VISVEYAVRD 223 (425)
Q Consensus 214 ~i~v~~a~~~ 223 (425)
.++|..+...
T Consensus 141 ~m~vq~stsr 150 (346)
T KOG0109|consen 141 RMHVQLSTSR 150 (346)
T ss_pred eeeeeeeccc
Confidence 9999998764
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.95 E-value=1.7e-26 Score=228.11 Aligned_cols=152 Identities=21% Similarity=0.469 Sum_probs=136.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEE
Q 014384 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 124 (425)
Q Consensus 53 ~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~ 124 (425)
..++|||+|||+.+|+++|+++|..||+|..|.|. +|||||+|.+.++|++||..|||..| .|+.|.|.|
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l--~g~~i~v~~ 79 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRL--QNKTIKVSY 79 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEE--CCeeEEEEe
Confidence 36799999999999999999999999999999983 68999999999999999999999999 899999999
Q ss_pred eccccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHH
Q 014384 125 TKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQE 196 (425)
Q Consensus 125 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~ 196 (425)
+..... .....+|||+|| |..+++++|+.+|..||.|..+.+. +|||||+|.+.+
T Consensus 80 a~~~~~----------------~~~~~~l~v~~l-~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~ 142 (352)
T TIGR01661 80 ARPSSD----------------SIKGANLYVSGL-PKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRD 142 (352)
T ss_pred eccccc----------------ccccceEEECCc-cccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHH
Confidence 875431 123468999999 8899999999999999999988884 579999999999
Q ss_pred HHHHHHHHcCCCccCC--eEEEEEEeeeC
Q 014384 197 DATRALDATNMSKLTD--RVISVEYAVRD 223 (425)
Q Consensus 197 ~A~~A~~~l~g~~~~g--~~i~v~~a~~~ 223 (425)
+|..|++.|||..+.| ..|.|.++...
T Consensus 143 ~A~~ai~~l~g~~~~g~~~~i~v~~a~~~ 171 (352)
T TIGR01661 143 EADRAIKTLNGTTPSGCTEPITVKFANNP 171 (352)
T ss_pred HHHHHHHHhCCCccCCCceeEEEEECCCC
Confidence 9999999999999987 56888887654
No 9
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=1.7e-26 Score=235.92 Aligned_cols=165 Identities=27% Similarity=0.433 Sum_probs=141.0
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 121 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~ 121 (425)
.....++|||+|||..+|+++|+++|++||.|..|.|. +|||||+|.+.++|.+|| .|+|..| .|+.|.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~--~g~~i~ 161 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQML--LGRPII 161 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEE--CCeeeE
Confidence 34567899999999999999999999999999999983 799999999999999999 6999999 799999
Q ss_pred EEEeccccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEc
Q 014384 122 VEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYE 193 (425)
Q Consensus 122 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~ 193 (425)
|.++........... .......+...+|||+|| +..+++++|+++|++||.|..|.|. +|||||+|.
T Consensus 162 v~~~~~~~~~~~~~~----~~~~~~~p~~~~l~v~nl-~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~ 236 (457)
T TIGR01622 162 VQSSQAEKNRAAKAA----THQPGDIPNFLKLYVGNL-HFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFH 236 (457)
T ss_pred Eeecchhhhhhhhcc----cccCCCCCCCCEEEEcCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEEC
Confidence 998765432211100 111112234789999999 8899999999999999999999886 579999999
Q ss_pred CHHHHHHHHHHcCCCccCCeEEEEEEeee
Q 014384 194 VQEDATRALDATNMSKLTDRVISVEYAVR 222 (425)
Q Consensus 194 ~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 222 (425)
+.++|..|++.|||..|.|+.|.|.|+..
T Consensus 237 ~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 237 DAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 99999999999999999999999999874
No 10
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.94 E-value=6.4e-26 Score=234.81 Aligned_cols=169 Identities=20% Similarity=0.339 Sum_probs=136.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEE
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 123 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~ 123 (425)
...++|||+|||..+|+++|.++|..||.|..|.| ++|||||+|.+.++|..||..|||+.| .|+.|.|.
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~--~~~~l~v~ 370 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDT--GDNKLHVQ 370 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEE
Confidence 34579999999999999999999999999999887 379999999999999999999999999 79999999
Q ss_pred EeccccCCCCCCCCC------------CCCCCCCCCCCCcEEEEEcCCCCC----------CCHHHHHhhhccCCcEEEE
Q 014384 124 WTKHERGIRRPGGGS------------SARRPSTNTRPSKTLFVINFDPYH----------TRTRDLERHFEPYGKIISV 181 (425)
Q Consensus 124 ~a~~~~~~~~~~~~~------------~~~~~~~~~~~~~~l~V~nl~p~~----------~~~~~L~~~f~~~G~v~~v 181 (425)
++............. ..........+..+|+|.|| ... ...++|+++|.+||.|+.|
T Consensus 371 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~-~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v 449 (509)
T TIGR01642 371 RACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNL-VTGDDLMDDEEYEEIYEDVKTEFSKYGPLINI 449 (509)
T ss_pred ECccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccC-CchhHhcCcchHHHHHHHHHHHHHhcCCeeEE
Confidence 986543221110000 00011122346788999998 321 0136789999999999999
Q ss_pred EEe-----------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeC
Q 014384 182 RIR-----------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 223 (425)
Q Consensus 182 ~~~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 223 (425)
.|+ .|+|||+|.+.++|.+|+..|||..|+|+.|.|.|....
T Consensus 450 ~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~ 502 (509)
T TIGR01642 450 VIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGED 502 (509)
T ss_pred EeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCHH
Confidence 986 278999999999999999999999999999999997653
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.93 E-value=2.1e-25 Score=233.33 Aligned_cols=209 Identities=20% Similarity=0.341 Sum_probs=160.6
Q ss_pred eeEEEEeCCCCccccccc-------CCcceeecccccccchhhhhhhcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeE
Q 014384 11 HYLLIVYSHSVWPVQKKY-------LPRRLYVLGFRRSHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDR 83 (425)
Q Consensus 11 ~y~~i~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~ 83 (425)
.|+||.|.....+..+.. ....+.+..+....... .......++|||+||+.++|+++|.++|..||+|..
T Consensus 130 g~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~--~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~ 207 (562)
T TIGR01628 130 GYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHERE--AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITS 207 (562)
T ss_pred cEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccccccc--cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEE
Confidence 599999988765444331 12333333333222111 123455688999999999999999999999999999
Q ss_pred EEEe-------CCEEEEEEcCHHHHHHHHHhcCCCeecCC----CcEEEEEEeccccCCCCCCCC--CCCCCCCCCCCCC
Q 014384 84 VDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRK----GRRLRVEWTKHERGIRRPGGG--SSARRPSTNTRPS 150 (425)
Q Consensus 84 v~i~-------kg~aFV~F~~~~~A~~A~~~lng~~ig~~----gr~l~V~~a~~~~~~~~~~~~--~~~~~~~~~~~~~ 150 (425)
|.+. +|||||+|.+.++|.+|++.|||..| . |+.|.|.++............ .............
T Consensus 208 ~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i--~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~ 285 (562)
T TIGR01628 208 AAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKI--GLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQG 285 (562)
T ss_pred EEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEe--cccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCC
Confidence 9883 78999999999999999999999999 7 999999987654321000000 0000111223456
Q ss_pred cEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe-------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeC
Q 014384 151 KTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 223 (425)
Q Consensus 151 ~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 223 (425)
.+|||+|| +..+++++|+++|+.||.|+.|.+. +|||||+|.+.++|.+|+..|||..|+|+.|.|.+|..+
T Consensus 286 ~~l~V~nl-~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 286 VNLYVKNL-DDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRK 364 (562)
T ss_pred CEEEEeCC-CCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCc
Confidence 78999999 7889999999999999999999985 589999999999999999999999999999999999875
Q ss_pred C
Q 014384 224 D 224 (425)
Q Consensus 224 ~ 224 (425)
.
T Consensus 365 ~ 365 (562)
T TIGR01628 365 E 365 (562)
T ss_pred H
Confidence 3
No 12
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.93 E-value=7.2e-25 Score=224.24 Aligned_cols=164 Identities=21% Similarity=0.233 Sum_probs=135.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcCHHHHHHHHHhc--CCCeecCCCcEEEEEEeccc
Q 014384 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGL--DRTEFGRKGRRLRVEWTKHE 128 (425)
Q Consensus 53 ~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--kg~aFV~F~~~~~A~~A~~~l--ng~~ig~~gr~l~V~~a~~~ 128 (425)
+.++|||+|||+.+|+++|.++|..||+|..|.|. ++||||+|++.++|++|+..| |+..| .|+.|.|+|+...
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l--~g~~l~v~~s~~~ 78 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYI--RGQPAFFNYSTSQ 78 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceE--cCeEEEEEecCCc
Confidence 36899999999999999999999999999999884 799999999999999999864 67788 8999999999754
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe----ccEEEEEEcCHHHHHHHHHH
Q 014384 129 RGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR----RNFAFVQYEVQEDATRALDA 204 (425)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~----~g~afV~f~~~~~A~~A~~~ 204 (425)
........ ...........+|+|.|| +..+++++|+++|+.||.|..|.+. .++|||+|.+.++|.+|++.
T Consensus 79 ~~~~~~~~----~~~~~~~~~~~~v~v~nl-~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~ 153 (481)
T TIGR01649 79 EIKRDGNS----DFDSAGPNKVLRVIVENP-MYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAA 153 (481)
T ss_pred ccccCCCC----cccCCCCCceEEEEEcCC-CCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHH
Confidence 31111100 000111123357899999 7889999999999999999999885 24899999999999999999
Q ss_pred cCCCccCC--eEEEEEEeeeC
Q 014384 205 TNMSKLTD--RVISVEYAVRD 223 (425)
Q Consensus 205 l~g~~~~g--~~i~v~~a~~~ 223 (425)
|||..|.| ..|.|+|++..
T Consensus 154 Lng~~i~~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 154 LNGADIYNGCCTLKIEYAKPT 174 (481)
T ss_pred hcCCcccCCceEEEEEEecCC
Confidence 99999965 58999998763
No 13
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.93 E-value=9.6e-25 Score=223.33 Aligned_cols=168 Identities=25% Similarity=0.332 Sum_probs=139.0
Q ss_pred CCCceEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEe---CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEecc
Q 014384 52 AMMRPIFCGNFEY-DARQSDLERLFRRYGKVDRVDMK---SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKH 127 (425)
Q Consensus 52 ~~~~~l~V~nL~~-~~t~~~L~~lF~~~G~V~~v~i~---kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~ 127 (425)
.+.++|||+||++ .+|+++|.+||+.||.|..|+|. +|||||+|.+.++|..||..|||..| .|+.|.|.+++.
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l--~g~~l~v~~s~~ 350 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKL--FGKPLRVCPSKQ 350 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEE--CCceEEEEEccc
Confidence 3568999999998 69999999999999999999984 79999999999999999999999999 899999999876
Q ss_pred ccCCCCCC----CCC------CC-----CC------CCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCc--EEEEEEe
Q 014384 128 ERGIRRPG----GGS------SA-----RR------PSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGK--IISVRIR 184 (425)
Q Consensus 128 ~~~~~~~~----~~~------~~-----~~------~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~--v~~v~~~ 184 (425)
........ .+. .. .. .....++..+|||.|| |..+++++|+++|+.||. |+.|.+.
T Consensus 351 ~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NL-p~~~tee~L~~lF~~~G~~~i~~ik~~ 429 (481)
T TIGR01649 351 QNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNI-PLSVSEEDLKELFAENGVHKVKKFKFF 429 (481)
T ss_pred ccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecC-CCCCCHHHHHHHHHhcCCccceEEEEe
Confidence 43211000 000 00 00 0012356789999999 789999999999999998 8888774
Q ss_pred ------ccEEEEEEcCHHHHHHHHHHcCCCccCCeE------EEEEEeee
Q 014384 185 ------RNFAFVQYEVQEDATRALDATNMSKLTDRV------ISVEYAVR 222 (425)
Q Consensus 185 ------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~------i~v~~a~~ 222 (425)
+++|||+|.+.++|.+||..||+..|.|.. |+|.|++.
T Consensus 430 ~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~ 479 (481)
T TIGR01649 430 PKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTS 479 (481)
T ss_pred cCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccC
Confidence 489999999999999999999999999985 99998865
No 14
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.93 E-value=8.6e-25 Score=226.38 Aligned_cols=170 Identities=16% Similarity=0.270 Sum_probs=136.5
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhc------------CCeeEEEEe--CCEEEEEEcCHHHHHHHHHhcCCCeecC
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRY------------GKVDRVDMK--SGFAFIYMDDERDAEDAIRGLDRTEFGR 115 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~------------G~V~~v~i~--kg~aFV~F~~~~~A~~A~~~lng~~ig~ 115 (425)
.....++|||||||+.+|+++|.+||..| +.|..|.+. +|||||+|.+.++|..|| .|||+.|
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~~-- 247 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAM-ALDSIIY-- 247 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhh-cCCCeEe--
Confidence 45567899999999999999999999975 356666663 899999999999999999 7999999
Q ss_pred CCcEEEEEEeccccCCCCCC-----CCC--C------CCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEE
Q 014384 116 KGRRLRVEWTKHERGIRRPG-----GGS--S------ARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVR 182 (425)
Q Consensus 116 ~gr~l~V~~a~~~~~~~~~~-----~~~--~------~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~ 182 (425)
.|..|.|............. ... . ............+|||+|| |..+++++|+++|+.||.|..+.
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~~~ 326 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNL-PLYLGEDQIKELLESFGDLKAFN 326 (509)
T ss_pred eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEE
Confidence 89999997654332110000 000 0 0011112345679999999 89999999999999999999988
Q ss_pred Ee--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeC
Q 014384 183 IR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 223 (425)
Q Consensus 183 ~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 223 (425)
|. +|||||+|.+.++|..|++.|||..|+|..|.|.++...
T Consensus 327 ~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 327 LIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred EEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 74 589999999999999999999999999999999998653
No 15
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.93 E-value=1.6e-24 Score=226.80 Aligned_cols=199 Identities=20% Similarity=0.296 Sum_probs=155.2
Q ss_pred eeEEEEeCCCCccccccc-CCcc-eeecccccccchhhhhhhcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--
Q 014384 11 HYLLIVYSHSVWPVQKKY-LPRR-LYVLGFRRSHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM-- 86 (425)
Q Consensus 11 ~y~~i~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i-- 86 (425)
.||||.|.+...+..+.. +... +........+.............+|||+||+.++|+++|.++|++||.|..|.|
T Consensus 43 G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~ 122 (562)
T TIGR01628 43 GYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVAT 122 (562)
T ss_pred eEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeee
Confidence 499999998776555542 2222 111111111111111122334568999999999999999999999999999988
Q ss_pred -----eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEeccccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCC
Q 014384 87 -----KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPY 161 (425)
Q Consensus 87 -----~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~ 161 (425)
++|||||+|.+.++|..|+..|||..+ .|+.|.|.......... .......++|||.|| +.
T Consensus 123 ~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~--~~~~i~v~~~~~~~~~~-----------~~~~~~~~~l~V~nl-~~ 188 (562)
T TIGR01628 123 DENGKSRGYGFVHFEKEESAKAAIQKVNGMLL--NDKEVYVGRFIKKHERE-----------AAPLKKFTNLYVKNL-DP 188 (562)
T ss_pred cCCCCcccEEEEEECCHHHHHHHHHHhcccEe--cCceEEEeccccccccc-----------cccccCCCeEEEeCC-CC
Confidence 379999999999999999999999999 89999998655433111 112344578999999 78
Q ss_pred CCCHHHHHhhhccCCcEEEEEEe-------ccEEEEEEcCHHHHHHHHHHcCCCccC----CeEEEEEEeeeC
Q 014384 162 HTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLT----DRVISVEYAVRD 223 (425)
Q Consensus 162 ~~~~~~L~~~f~~~G~v~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~i~v~~a~~~ 223 (425)
.+++++|+++|..||.|..+.+. +|||||+|.+.++|.+|++.|+|..|. |..|.|.++..+
T Consensus 189 ~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k 261 (562)
T TIGR01628 189 SVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKR 261 (562)
T ss_pred cCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccCh
Confidence 89999999999999999999885 569999999999999999999999999 999999887654
No 16
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.92 E-value=5.4e-24 Score=217.51 Aligned_cols=212 Identities=16% Similarity=0.324 Sum_probs=152.8
Q ss_pred eeeEEEEeCCCCcccccccCCcceeecccc-----cccchhh------hhhhcCCCceEEEcCCCCCCCHHHHHHHHhhc
Q 014384 10 CHYLLIVYSHSVWPVQKKYLPRRLYVLGFR-----RSHSQLS------IAAFEAMMRPIFCGNFEYDARQSDLERLFRRY 78 (425)
Q Consensus 10 ~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~------~~~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~ 78 (425)
..||||+|.+...+..+..+........-+ ....... ........++|||+|||..+|+++|.++|+.|
T Consensus 131 kg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~ 210 (457)
T TIGR01622 131 KGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPF 210 (457)
T ss_pred ceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhc
Confidence 359999999877766655444333211110 0000000 00011235899999999999999999999999
Q ss_pred CCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEeccccCCCCC-------------CC-
Q 014384 79 GKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRP-------------GG- 136 (425)
Q Consensus 79 G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~~~~~~~-------------~~- 136 (425)
|.|..|.|. +|||||+|.+.++|.+|+..|||..| .|+.|.|.|+......... +.
T Consensus 211 G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i--~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (457)
T TIGR01622 211 GDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFEL--AGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKN 288 (457)
T ss_pred CCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEE--CCEEEEEEEccCCCccccchhhhccccccccCCcC
Confidence 999999883 68999999999999999999999999 8999999996532110000 00
Q ss_pred ----------------C---C-----C-------------------CC-------------C----CCCCCCCCcEEEEE
Q 014384 137 ----------------G---S-----S-------------------AR-------------R----PSTNTRPSKTLFVI 156 (425)
Q Consensus 137 ----------------~---~-----~-------------------~~-------------~----~~~~~~~~~~l~V~ 156 (425)
. . . .. . ......+..+|+|.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 368 (457)
T TIGR01622 289 LNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLS 368 (457)
T ss_pred CCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEe
Confidence 0 0 0 00 0 00022456789999
Q ss_pred cCCCCCCC---------HHHHHhhhccCCcEEEEEEe----ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeC
Q 014384 157 NFDPYHTR---------TRDLERHFEPYGKIISVRIR----RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 223 (425)
Q Consensus 157 nl~p~~~~---------~~~L~~~f~~~G~v~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 223 (425)
||...... .++|++.|.+||.|+.|.+. .|++||+|.+.++|..|++.|||..|+|+.|.|.|....
T Consensus 369 n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 369 NMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred cCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence 99322211 26799999999999999885 689999999999999999999999999999999998654
No 17
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=1.1e-23 Score=186.82 Aligned_cols=212 Identities=18% Similarity=0.267 Sum_probs=161.3
Q ss_pred eeEEEEeCCCCcccccccCCcceeecccccccchhhhhhhcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE----
Q 014384 11 HYLLIVYSHSVWPVQKKYLPRRLYVLGFRRSHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM---- 86 (425)
Q Consensus 11 ~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i---- 86 (425)
.|.||.|-....+..+.+.-..+....-..+..-.....+......|||.+||..+|..+|+++|.+||.|..-.|
T Consensus 84 GYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dq 163 (360)
T KOG0145|consen 84 GYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQ 163 (360)
T ss_pred ccceeeecChHHHHHHHhhhcceeeccceEEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhc
Confidence 5999999888877766654444433322222222222245566789999999999999999999999998865444
Q ss_pred ----eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEeccccCCCCCCC----------CC--------------
Q 014384 87 ----KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGG----------GS-------------- 138 (425)
Q Consensus 87 ----~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~~~~~~~~~----------~~-------------- 138 (425)
++|.+||.|....+|+.||..|||..-...-.+|.|.|++.......... +.
T Consensus 164 vtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~ 243 (360)
T KOG0145|consen 164 VTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLD 243 (360)
T ss_pred ccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccc
Confidence 69999999999999999999999975533677999999976542211100 00
Q ss_pred -----------------------CCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccE
Q 014384 139 -----------------------SARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNF 187 (425)
Q Consensus 139 -----------------------~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~ 187 (425)
.+...+.......||||.|| ...+++..|.++|..||.|..|++. +||
T Consensus 244 ~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNL-spd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGf 322 (360)
T KOG0145|consen 244 NLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNL-SPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGF 322 (360)
T ss_pred cccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEec-CCCchHhHHHHHhCcccceeeEEEEecCCcccccce
Confidence 00001222334689999999 5677799999999999999999985 789
Q ss_pred EEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeC
Q 014384 188 AFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 223 (425)
Q Consensus 188 afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 223 (425)
+||.+.+-++|..|+..|||..++++.|.|.|...+
T Consensus 323 gFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 323 GFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred eEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 999999999999999999999999999999997653
No 18
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.91 E-value=3.8e-24 Score=180.67 Aligned_cols=159 Identities=28% Similarity=0.465 Sum_probs=138.1
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEE
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 122 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V 122 (425)
-....|||||||+..++++.|.+||-++|+|..|.|+ +|||||+|.++++|+.|+..||...| -|++|+|
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkL--YgrpIrv 83 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKL--YGRPIRV 83 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHh--cCceeEE
Confidence 3556899999999999999999999999999999993 89999999999999999999998888 6999999
Q ss_pred EEeccccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEE-EE--------eccEEEEEEc
Q 014384 123 EWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISV-RI--------RRNFAFVQYE 193 (425)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v-~~--------~~g~afV~f~ 193 (425)
..+..-. ....-+..|||+||++ .+++..|.+.|+.||.+... .+ +++||||.|.
T Consensus 84 ~kas~~~---------------~nl~vganlfvgNLd~-~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~ 147 (203)
T KOG0131|consen 84 NKASAHQ---------------KNLDVGANLFVGNLDP-EVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYA 147 (203)
T ss_pred Eeccccc---------------ccccccccccccccCc-chhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEech
Confidence 9876221 1123347899999976 88899999999999987663 22 2679999999
Q ss_pred CHHHHHHHHHHcCCCccCCeEEEEEEeeeCCCCC
Q 014384 194 VQEDATRALDATNMSKLTDRVISVEYAVRDDDDR 227 (425)
Q Consensus 194 ~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~~~~ 227 (425)
+.+.+.+|+..|||..+++++|.|.++..+....
T Consensus 148 sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 148 SFEASDAAIGSMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred hHHHHHHHHHHhccchhcCCceEEEEEEecCCCc
Confidence 9999999999999999999999999999875443
No 19
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=3.6e-24 Score=190.09 Aligned_cols=161 Identities=42% Similarity=0.683 Sum_probs=139.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEeccccCCCC
Q 014384 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRR 133 (425)
Q Consensus 54 ~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~~~~~~ 133 (425)
+..||||+|++.+.+.+|+.||..||.|.+|.|+.||+||+|+++.+|..|++.|||++| .|..|.|+|+........
T Consensus 1 m~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~gf~fv~fed~rda~Dav~~l~~~~l--~~e~~vve~~r~~~~~~g 78 (216)
T KOG0106|consen 1 MPRVYIGRLPYRARERDVERFFKGYGKIPDADMKNGFGFVEFEDPRDADDAVHDLDGKEL--CGERLVVEHARGKRRGRG 78 (216)
T ss_pred CCceeecccCCccchhHHHHHHhhccccccceeecccceeccCchhhhhcccchhcCcee--cceeeeeecccccccccC
Confidence 357999999999999999999999999999999999999999999999999999999999 677799999987554331
Q ss_pred CCCCC----CCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEeccEEEEEEcCHHHHHHHHHHcCCCc
Q 014384 134 PGGGS----SARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSK 209 (425)
Q Consensus 134 ~~~~~----~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~ 209 (425)
...+. .......+....+.|+|.++ +..+.|++|.++|.++|++....+..+++||+|.+.++|..|+..|++..
T Consensus 79 ~~~~g~r~~~~~~~~~p~~s~~r~~~~~~-~~r~~~qdl~d~~~~~g~~~~~~~~~~~~~v~Fs~~~da~ra~~~l~~~~ 157 (216)
T KOG0106|consen 79 RPRGGDRRSDSRRYRPPSRTHFRLIVRNL-SLRVSWQDLKDHFRPAGEVTYVDARRNFAFVEFSEQEDAKRALEKLDGKK 157 (216)
T ss_pred CCCCCCccchhhccCCcccccceeeeccc-hhhhhHHHHhhhhcccCCCchhhhhccccceeehhhhhhhhcchhccchh
Confidence 11111 01222344556678889999 78888999999999999998888889999999999999999999999999
Q ss_pred cCCeEEEE
Q 014384 210 LTDRVISV 217 (425)
Q Consensus 210 ~~g~~i~v 217 (425)
+.|+.|++
T Consensus 158 ~~~~~l~~ 165 (216)
T KOG0106|consen 158 LNGRRISV 165 (216)
T ss_pred hcCceeee
Confidence 99999999
No 20
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=5.2e-24 Score=201.07 Aligned_cols=162 Identities=23% Similarity=0.417 Sum_probs=140.8
Q ss_pred hhcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcCHHHHHHHHHhcCCC-eecCCCcE
Q 014384 49 AFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRT-EFGRKGRR 119 (425)
Q Consensus 49 ~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--------~kg~aFV~F~~~~~A~~A~~~lng~-~ig~~gr~ 119 (425)
+.+...-+||||-||..++|.||++||++||.|.+|.| ++|||||.|.+.++|.+|+.+|++. .|.....+
T Consensus 29 ~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p 108 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP 108 (510)
T ss_pred CCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence 34566789999999999999999999999999999998 3899999999999999999999885 44347789
Q ss_pred EEEEEeccccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe-------ccEEEEEE
Q 014384 120 LRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQY 192 (425)
Q Consensus 120 l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~-------~g~afV~f 192 (425)
|.|.+|..+... .....+|||+-| +..+++.+|+.+|.+||.|++|.|. +|||||+|
T Consensus 109 vqvk~Ad~E~er---------------~~~e~KLFvg~l-sK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~f 172 (510)
T KOG0144|consen 109 VQVKYADGERER---------------IVEERKLFVGML-SKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKF 172 (510)
T ss_pred eeecccchhhhc---------------cccchhhhhhhc-cccccHHHHHHHHHhhCccchhhheecccccccceeEEEE
Confidence 999999876522 134578999999 7899999999999999999999995 68999999
Q ss_pred cCHHHHHHHHHHcCCCc-cCC--eEEEEEEeeeCCCC
Q 014384 193 EVQEDATRALDATNMSK-LTD--RVISVEYAVRDDDD 226 (425)
Q Consensus 193 ~~~~~A~~A~~~l~g~~-~~g--~~i~v~~a~~~~~~ 226 (425)
.+.+.|..|++.|||.. +.| .+|.|.||..+++.
T Consensus 173 stke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 173 STKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDK 209 (510)
T ss_pred ehHHHHHHHHHhhccceeeccCCCceEEEecccCCCc
Confidence 99999999999999954 444 68999999887544
No 21
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=2.5e-22 Score=169.70 Aligned_cols=158 Identities=31% Similarity=0.540 Sum_probs=132.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-----CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEec
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-----SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 126 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~-----kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~ 126 (425)
...++|||+|||.++.+.+|++||-+||.|.+|.|+ ..||||+|+++.+|+.||..-+|..+ +|..|.|+|+.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdy--dg~rLRVEfpr 81 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDY--DGCRLRVEFPR 81 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhccccccc--CcceEEEEecc
Confidence 456899999999999999999999999999999995 67999999999999999999999999 89999999998
Q ss_pred cccCCCCCCC----------CCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe-ccEEEEEEcCH
Q 014384 127 HERGIRRPGG----------GSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-RNFAFVQYEVQ 195 (425)
Q Consensus 127 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~-~g~afV~f~~~ 195 (425)
.........+ +.......+.-.....|+|.+| |...+|++|++++.+.|.|....+. -+++.|+|...
T Consensus 82 ggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGL-p~SgSWQDLKDHmReaGdvCfadv~rDg~GvV~~~r~ 160 (241)
T KOG0105|consen 82 GGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGL-PPSGSWQDLKDHMREAGDVCFADVQRDGVGVVEYLRK 160 (241)
T ss_pred CCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecC-CCCCchHHHHHHHHhhCCeeeeeeecccceeeeeeeh
Confidence 7642211111 0111122233344568999999 7888899999999999999999987 46999999999
Q ss_pred HHHHHHHHHcCCCccCC
Q 014384 196 EDATRALDATNMSKLTD 212 (425)
Q Consensus 196 ~~A~~A~~~l~g~~~~g 212 (425)
++++-|+..|+...+.-
T Consensus 161 eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 161 EDMKYAVRKLDDQKFRS 177 (241)
T ss_pred hhHHHHHHhhccccccC
Confidence 99999999999887763
No 22
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=2.5e-23 Score=201.47 Aligned_cols=168 Identities=27% Similarity=0.538 Sum_probs=143.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEec
Q 014384 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 126 (425)
Q Consensus 55 ~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~ 126 (425)
.||||++||+.+|.++|.++|+.+|+|..+.+ ++||+||.|.-.++++.|+..+++..| .|+.|.|.++.
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf--~Gr~l~v~~A~ 83 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKF--EGRILNVDPAK 83 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcc--cceeccccccc
Confidence 79999999999999999999999999998887 489999999999999999999999999 89999999987
Q ss_pred cccCCC--CCCCCCCCCCC--------CCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe-------ccEEE
Q 014384 127 HERGIR--RPGGGSSARRP--------STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAF 189 (425)
Q Consensus 127 ~~~~~~--~~~~~~~~~~~--------~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~-------~g~af 189 (425)
...-.. ..+.+...... .....+...|.|.|| |+.+...+|+.+|+.||.|..|.|| .||||
T Consensus 84 ~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNL-Pf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaF 162 (678)
T KOG0127|consen 84 KRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNL-PFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAF 162 (678)
T ss_pred ccccchhcccccchhhhcccccCCcchhhccCccceEEeecC-CcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEE
Confidence 544221 11111100000 112344789999999 9999999999999999999999997 47999
Q ss_pred EEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeCCC
Q 014384 190 VQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDD 225 (425)
Q Consensus 190 V~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~~ 225 (425)
|+|....+|..|++.+|+.+|+|++|.|.||..+..
T Consensus 163 V~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ 198 (678)
T KOG0127|consen 163 VQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDT 198 (678)
T ss_pred EEEeeHHHHHHHHHhccCceecCceeEEeeeccccc
Confidence 999999999999999999999999999999998753
No 23
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.89 E-value=1.5e-22 Score=206.63 Aligned_cols=149 Identities=26% Similarity=0.418 Sum_probs=127.8
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE-------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEE
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM-------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 123 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i-------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~ 123 (425)
+...++|||+|||.++|+++|.++|++||.|.+|+| ++|||||+|.+.++|++||+.||+..|. .|+.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~-~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIR-PGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeec-CCcccccc
Confidence 345689999999999999999999999999999988 3899999999999999999999999883 47887776
Q ss_pred EeccccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCc-EEEEEE---------eccEEEEEEc
Q 014384 124 WTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGK-IISVRI---------RRNFAFVQYE 193 (425)
Q Consensus 124 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~-v~~v~~---------~~g~afV~f~ 193 (425)
++. ..++|||+|| |..+++++|.++|.+++. ++.+.+ .+|||||+|.
T Consensus 134 ~S~----------------------~~~rLFVgNL-P~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~ 190 (578)
T TIGR01648 134 ISV----------------------DNCRLFVGGI-PKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYE 190 (578)
T ss_pred ccc----------------------cCceeEeecC-CcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcC
Confidence 542 2478999999 888899999999999863 444333 2689999999
Q ss_pred CHHHHHHHHHHcCC--CccCCeEEEEEEeeeC
Q 014384 194 VQEDATRALDATNM--SKLTDRVISVEYAVRD 223 (425)
Q Consensus 194 ~~~~A~~A~~~l~g--~~~~g~~i~v~~a~~~ 223 (425)
++++|..|+..|+. ..+.|+.|.|.|+..+
T Consensus 191 s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~ 222 (578)
T TIGR01648 191 SHRAAAMARRKLMPGRIQLWGHVIAVDWAEPE 222 (578)
T ss_pred CHHHHHHHHHHhhccceEecCceEEEEeeccc
Confidence 99999999998864 4578999999998765
No 24
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=1.1e-22 Score=180.40 Aligned_cols=154 Identities=23% Similarity=0.485 Sum_probs=138.4
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEE
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 122 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V 122 (425)
....+.|.|.-||.++|+++|+.||+..|+|+.|+| +.||+||.|-++++|++|+..|||..| ..++|+|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrL--Q~KTIKV 115 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRL--QNKTIKV 115 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceee--ccceEEE
Confidence 445578999999999999999999999999999999 379999999999999999999999999 8999999
Q ss_pred EEeccccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEE--------eccEEEEEEcC
Q 014384 123 EWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI--------RRNFAFVQYEV 194 (425)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~--------~~g~afV~f~~ 194 (425)
.||.+... ......|||.+| |..+++.+|+++|.+||.|..-+| .+|.+||.|..
T Consensus 116 SyARPSs~----------------~Ik~aNLYvSGl-PktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDK 178 (360)
T KOG0145|consen 116 SYARPSSD----------------SIKDANLYVSGL-PKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDK 178 (360)
T ss_pred EeccCChh----------------hhcccceEEecC-CccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecc
Confidence 99987652 333467999999 899999999999999999876665 38999999999
Q ss_pred HHHHHHHHHHcCCCccCC--eEEEEEEeeeC
Q 014384 195 QEDATRALDATNMSKLTD--RVISVEYAVRD 223 (425)
Q Consensus 195 ~~~A~~A~~~l~g~~~~g--~~i~v~~a~~~ 223 (425)
..+|+.||+.|||..--| .+|.|.||..+
T Consensus 179 r~EAe~AIk~lNG~~P~g~tepItVKFannP 209 (360)
T KOG0145|consen 179 RIEAEEAIKGLNGQKPSGCTEPITVKFANNP 209 (360)
T ss_pred hhHHHHHHHhccCCCCCCCCCCeEEEecCCc
Confidence 999999999999998877 57999999875
No 25
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=8.3e-22 Score=190.98 Aligned_cols=167 Identities=26% Similarity=0.519 Sum_probs=137.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEec
Q 014384 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 126 (425)
Q Consensus 54 ~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~-------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~ 126 (425)
--.|.|.|||+.+.+.+|..+|+.||.|.+|.|+ .|||||+|....+|..||..|||..| +|++|.|.||.
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i--~gR~VAVDWAV 194 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKI--DGRPVAVDWAV 194 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCcee--cCceeEEeeec
Confidence 5689999999999999999999999999999994 69999999999999999999999999 89999999986
Q ss_pred cccCCCCCCC-----------------------------------------C----------CC---------C------
Q 014384 127 HERGIRRPGG-----------------------------------------G----------SS---------A------ 140 (425)
Q Consensus 127 ~~~~~~~~~~-----------------------------------------~----------~~---------~------ 140 (425)
.+......+. . .. .
T Consensus 195 ~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~ 274 (678)
T KOG0127|consen 195 DKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKK 274 (678)
T ss_pred ccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccC
Confidence 5542211100 0 00 0
Q ss_pred --------CCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHH
Q 014384 141 --------RRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDA 204 (425)
Q Consensus 141 --------~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~ 204 (425)
...........+|||.|| |+.+++++|.++|.+||.|.++.|. +|.|||.|.++.+|.+||..
T Consensus 275 ~~~k~~q~k~~~en~~~~~tVFvRNL-~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~ 353 (678)
T KOG0127|consen 275 ESDKKAQNKTTRENITEGKTVFVRNL-PFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEA 353 (678)
T ss_pred cccchhccccccccccccceEEEecC-CccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHh
Confidence 000111223379999999 9999999999999999999999884 78999999999999999987
Q ss_pred c-----CC-CccCCeEEEEEEeeeC
Q 014384 205 T-----NM-SKLTDRVISVEYAVRD 223 (425)
Q Consensus 205 l-----~g-~~~~g~~i~v~~a~~~ 223 (425)
. .| ..|+|+.|.|..|...
T Consensus 354 Aspa~e~g~~ll~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 354 ASPASEDGSVLLDGRLLKVTLAVTR 378 (678)
T ss_pred cCccCCCceEEEeccEEeeeeccch
Confidence 6 23 6788999999998664
No 26
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=1e-21 Score=186.51 Aligned_cols=149 Identities=26% Similarity=0.422 Sum_probs=132.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEE
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 123 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~ 123 (425)
...+.||||.||.++.|++|.-||++.|+|-++.|+ +|||||.|.+.++|+.|+..||+.+|- .|+.|.|.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir-~GK~igvc 159 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR-PGKLLGVC 159 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCcccc-CCCEeEEE
Confidence 445899999999999999999999999999999983 899999999999999999999999996 79999999
Q ss_pred EeccccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCc-EEEEEEe---------ccEEEEEEc
Q 014384 124 WTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGK-IISVRIR---------RNFAFVQYE 193 (425)
Q Consensus 124 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~-v~~v~~~---------~g~afV~f~ 193 (425)
.+.. ++.|||+|| |...+.++|.+.|.+.++ |++|.+. +|||||+|.
T Consensus 160 ~Sva----------------------n~RLFiG~I-PK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe 216 (506)
T KOG0117|consen 160 VSVA----------------------NCRLFIGNI-PKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYE 216 (506)
T ss_pred Eeee----------------------cceeEeccC-CccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEee
Confidence 7654 589999999 888889999999999985 6666663 689999999
Q ss_pred CHHHHHHHHHHcCC--CccCCeEEEEEEeeeCC
Q 014384 194 VQEDATRALDATNM--SKLTDRVISVEYAVRDD 224 (425)
Q Consensus 194 ~~~~A~~A~~~l~g--~~~~g~~i~v~~a~~~~ 224 (425)
++..|..|-..|-. .++-|..|.|.||....
T Consensus 217 ~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~ 249 (506)
T KOG0117|consen 217 SHRAAAMARRKLMPGKIKLWGNAITVDWAEPEE 249 (506)
T ss_pred cchhHHHHHhhccCCceeecCCcceeeccCccc
Confidence 99999999887754 45669999999998864
No 27
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.86 E-value=1.3e-21 Score=195.47 Aligned_cols=159 Identities=26% Similarity=0.540 Sum_probs=139.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-----------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEE
Q 014384 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-----------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 123 (425)
Q Consensus 55 ~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~-----------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~ 123 (425)
++|||.||++.+|.++|..+|.+.|.|..|.|. .|||||+|.++++|+.|++.|||+.| +|+.|.|.
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvl--dGH~l~lk 593 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVL--DGHKLELK 593 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCcee--cCceEEEE
Confidence 449999999999999999999999999999872 49999999999999999999999999 99999999
Q ss_pred EeccccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCH
Q 014384 124 WTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQ 195 (425)
Q Consensus 124 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~ 195 (425)
++...... .. ..........+.|+|.|| |+.++-.+|+++|..||.|..|.|+ +|||||+|-++
T Consensus 594 ~S~~k~~~--~~-----gK~~~~kk~~tKIlVRNi-pFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~ 665 (725)
T KOG0110|consen 594 ISENKPAS--TV-----GKKKSKKKKGTKILVRNI-PFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTP 665 (725)
T ss_pred eccCcccc--cc-----ccccccccccceeeeecc-chHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCc
Confidence 99822210 00 112222333689999999 9999999999999999999999997 57999999999
Q ss_pred HHHHHHHHHcCCCccCCeEEEEEEeeeC
Q 014384 196 EDATRALDATNMSKLTDRVISVEYAVRD 223 (425)
Q Consensus 196 ~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 223 (425)
.+|..|+++|..+.+.|+.|.++||...
T Consensus 666 ~ea~nA~~al~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 666 REAKNAFDALGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred HHHHHHHHhhcccceechhhheehhccc
Confidence 9999999999999999999999999875
No 28
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=1.3e-20 Score=174.48 Aligned_cols=165 Identities=19% Similarity=0.440 Sum_probs=138.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEE
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 123 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~ 123 (425)
.-++.||||.|.+.+.|+.|+..|..||+|+.|.|+ +|||||+|+-+|.|..|++.|||..+ .|+.|+|.
T Consensus 111 aiMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~ml--GGRNiKVg 188 (544)
T KOG0124|consen 111 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQML--GGRNIKVG 188 (544)
T ss_pred HHhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccc--cCcccccc
Confidence 346899999999999999999999999999999993 99999999999999999999999999 59999998
Q ss_pred EeccccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCH
Q 014384 124 WTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQ 195 (425)
Q Consensus 124 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~ 195 (425)
........+ + ...........-+.|||..+ ..+.+++||+..|+-||+|+.|.+. +||+||+|.+.
T Consensus 189 rPsNmpQAQ-p----iID~vqeeAk~fnRiYVaSv-HpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~ 262 (544)
T KOG0124|consen 189 RPSNMPQAQ-P----IIDMVQEEAKKFNRIYVASV-HPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNL 262 (544)
T ss_pred CCCCCcccc-h----HHHHHHHHHHhhheEEeeec-CCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccc
Confidence 543322000 0 00001122344579999999 5677799999999999999999995 78999999999
Q ss_pred HHHHHHHHHcCCCccCCeEEEEEEeeeCC
Q 014384 196 EDATRALDATNMSKLTDRVISVEYAVRDD 224 (425)
Q Consensus 196 ~~A~~A~~~l~g~~~~g~~i~v~~a~~~~ 224 (425)
....+|+..||-..++|.-|.|..+....
T Consensus 263 qs~~eAiasMNlFDLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 263 QSQSEAIASMNLFDLGGQYLRVGKCVTPP 291 (544)
T ss_pred cchHHHhhhcchhhcccceEecccccCCC
Confidence 99999999999999999999998876653
No 29
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=7.3e-20 Score=173.18 Aligned_cols=212 Identities=19% Similarity=0.314 Sum_probs=154.7
Q ss_pred eeEEEEeCCCCcccccccCCcceeecccccccchhhhh----hhcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE
Q 014384 11 HYLLIVYSHSVWPVQKKYLPRRLYVLGFRRSHSQLSIA----AFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM 86 (425)
Q Consensus 11 ~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i 86 (425)
.+|||.|.+...+..+.+.--.....+-.....++... +.....++|||+.|+..+||.+|+++|.+||.|++|.|
T Consensus 77 gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~i 156 (510)
T KOG0144|consen 77 GCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYI 156 (510)
T ss_pred ceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhh
Confidence 48999998876544333221111111111111111110 11134689999999999999999999999999999998
Q ss_pred -------eCCEEEEEEcCHHHHHHHHHhcCCC-eecCCCcEEEEEEeccccCCCCC-------------------CC---
Q 014384 87 -------KSGFAFIYMDDERDAEDAIRGLDRT-EFGRKGRRLRVEWTKHERGIRRP-------------------GG--- 136 (425)
Q Consensus 87 -------~kg~aFV~F~~~~~A~~A~~~lng~-~ig~~gr~l~V~~a~~~~~~~~~-------------------~~--- 136 (425)
++|||||.|.+.+.|..||++|||. .+.....+|.|.||..++..... ..
T Consensus 157 lrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~ 236 (510)
T KOG0144|consen 157 LRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLAS 236 (510)
T ss_pred eecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhh
Confidence 4899999999999999999999996 33237789999999766521000 00
Q ss_pred -----------------------------------------------------------C-----------CCC------
Q 014384 137 -----------------------------------------------------------G-----------SSA------ 140 (425)
Q Consensus 137 -----------------------------------------------------------~-----------~~~------ 140 (425)
+ ...
T Consensus 237 ~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~ 316 (510)
T KOG0144|consen 237 LGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSAS 316 (510)
T ss_pred hhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCcccc
Confidence 0 000
Q ss_pred --------------------------------------------------------------------------------
Q 014384 141 -------------------------------------------------------------------------------- 140 (425)
Q Consensus 141 -------------------------------------------------------------------------------- 140 (425)
T Consensus 317 ~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~ 396 (510)
T KOG0144|consen 317 APSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANL 396 (510)
T ss_pred CccccCcccccchhhhhHhhcCCCCchhcccccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhh
Confidence
Q ss_pred ------------------CCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcC
Q 014384 141 ------------------RRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEV 194 (425)
Q Consensus 141 ------------------~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~ 194 (425)
.......+.+..|||.+| |...-+.+|...|..||.|+..++. +.|+||.|++
T Consensus 397 a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhl-Pqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen 475 (510)
T KOG0144|consen 397 AAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHL-PQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYEN 475 (510)
T ss_pred cccchhhhhHhhhhhhcccCccccCCCccceeeeeC-chhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccc
Confidence 000223344578999999 8888899999999999999877763 5699999999
Q ss_pred HHHHHHHHHHcCCCccCCeEEEEEEeeeC
Q 014384 195 QEDATRALDATNMSKLTDRVISVEYAVRD 223 (425)
Q Consensus 195 ~~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 223 (425)
..+|.+||..|||..|+.+.++|......
T Consensus 476 ~~sa~~aI~amngfQig~KrlkVQlk~~~ 504 (510)
T KOG0144|consen 476 AQSAQNAISAMNGFQIGSKRLKVQLKRDR 504 (510)
T ss_pred hhhhHHHHHHhcchhhccccceEEeeecc
Confidence 99999999999999999999999887664
No 30
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=2e-19 Score=175.83 Aligned_cols=143 Identities=24% Similarity=0.486 Sum_probs=131.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-----CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEecccc
Q 014384 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-----SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 129 (425)
Q Consensus 55 ~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~-----kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~~ 129 (425)
..|||| ++||+..|.++|+.+|+|..|.+. .|||||.|.++++|+.||..||...| +|++|.|.|+....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~--~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVL--KGKPIRIMWSQRDP 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCccc--CCcEEEeehhccCC
Confidence 479999 999999999999999999999984 69999999999999999999999999 89999999987543
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe------ccEEEEEEcCHHHHHHHHH
Q 014384 130 GIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR------RNFAFVQYEVQEDATRALD 203 (425)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~------~g~afV~f~~~~~A~~A~~ 203 (425)
..|||.|| +..++..+|.++|+.||+|+.|.+. +|| ||+|+++++|.+|++
T Consensus 77 ---------------------~~~~i~nl-~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~ 133 (369)
T KOG0123|consen 77 ---------------------SLVFIKNL-DESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIE 133 (369)
T ss_pred ---------------------ceeeecCC-CcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHH
Confidence 11999999 5777899999999999999999995 679 999999999999999
Q ss_pred HcCCCccCCeEEEEEEeeeCCC
Q 014384 204 ATNMSKLTDRVISVEYAVRDDD 225 (425)
Q Consensus 204 ~l~g~~~~g~~i~v~~a~~~~~ 225 (425)
.|||..+.|+.|.|.....+..
T Consensus 134 ~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 134 KLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred HhcCcccCCCeeEEeeccchhh
Confidence 9999999999999998877543
No 31
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.81 E-value=1.3e-18 Score=149.96 Aligned_cols=79 Identities=37% Similarity=0.516 Sum_probs=72.6
Q ss_pred CCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEE
Q 014384 145 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 216 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 216 (425)
.......+|.|.|| .+.|+.++|..+|++||.|.+|.|+ +|||||.|.+..+|++|+++|+|..|+|+.|.
T Consensus 8 Pdv~gm~SLkVdNL-TyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNL-TYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCcccceeEEecce-eccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 34555689999999 8999999999999999999999996 68999999999999999999999999999999
Q ss_pred EEEeeeCC
Q 014384 217 VEYAVRDD 224 (425)
Q Consensus 217 v~~a~~~~ 224 (425)
|++|.-..
T Consensus 87 Vq~arygr 94 (256)
T KOG4207|consen 87 VQMARYGR 94 (256)
T ss_pred ehhhhcCC
Confidence 99987643
No 32
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=3.3e-19 Score=174.36 Aligned_cols=196 Identities=20% Similarity=0.310 Sum_probs=155.5
Q ss_pred eeeeEEEEeCCCCcccccc--cCCcceeecccccccchhhhhhhcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE
Q 014384 9 QCHYLLIVYSHSVWPVQKK--YLPRRLYVLGFRRSHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM 86 (425)
Q Consensus 9 ~~~y~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i 86 (425)
.+.|+++.|.....+-.+. +....+...++...+ .+.+...|||.||++.+|...|.++|+.||+|..|++
T Consensus 36 slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~-------s~rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv 108 (369)
T KOG0123|consen 36 SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMW-------SQRDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKV 108 (369)
T ss_pred ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeeh-------hccCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEE
Confidence 4679999997755433222 112222222233333 2233334999999999999999999999999999999
Q ss_pred ------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEeccccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCC
Q 014384 87 ------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDP 160 (425)
Q Consensus 87 ------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p 160 (425)
++|| ||+|+++++|.+|+..|||..+ .|+.|.|...........+. .. .......++|.|+ +
T Consensus 109 ~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll--~~kki~vg~~~~~~er~~~~-------~~-~~~~~t~v~vk~~-~ 176 (369)
T KOG0123|consen 109 ATDENGSKGY-FVQFESEESAKKAIEKLNGMLL--NGKKIYVGLFERKEEREAPL-------GE-YKKRFTNVYVKNL-E 176 (369)
T ss_pred EEcCCCceee-EEEeCCHHHHHHHHHHhcCccc--CCCeeEEeeccchhhhcccc-------cc-hhhhhhhhheecc-c
Confidence 4899 9999999999999999999999 89999998877654222111 11 3455678899999 7
Q ss_pred CCCCHHHHHhhhccCCcEEEEEEe-------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeC
Q 014384 161 YHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 223 (425)
Q Consensus 161 ~~~~~~~L~~~f~~~G~v~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 223 (425)
..++++.|.++|..||.|..+.++ ++|+||.|.++++|..|++.|++..+++..+.|.-+..+
T Consensus 177 ~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk 246 (369)
T KOG0123|consen 177 EDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKK 246 (369)
T ss_pred cccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccc
Confidence 889999999999999999999985 679999999999999999999999999999999887763
No 33
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.80 E-value=1.4e-18 Score=152.94 Aligned_cols=167 Identities=22% Similarity=0.418 Sum_probs=137.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHH----HHhhcCCeeEEEE-----eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEE
Q 014384 52 AMMRPIFCGNFEYDARQSDLER----LFRRYGKVDRVDM-----KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 122 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~----lF~~~G~V~~v~i-----~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V 122 (425)
.++.||||.||+..+..++|.. ||++||+|.+|.. .+|.|||.|.+.+.|-.|+..|+|..| -|+++.|
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpF--ygK~mri 84 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPF--YGKPMRI 84 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcc--cCchhhe
Confidence 4455999999999999999888 9999999999988 389999999999999999999999999 6999999
Q ss_pred EEeccccCCCCCCC------------------------CCC------CCC----CCCCCCCCcEEEEEcCCCCCCCHHHH
Q 014384 123 EWTKHERGIRRPGG------------------------GSS------ARR----PSTNTRPSKTLFVINFDPYHTRTRDL 168 (425)
Q Consensus 123 ~~a~~~~~~~~~~~------------------------~~~------~~~----~~~~~~~~~~l~V~nl~p~~~~~~~L 168 (425)
+||+.......... ... ... .....+++.+||+.|| |..++.+.|
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~ni-P~es~~e~l 163 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNI-PSESESEML 163 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecC-CcchhHHHH
Confidence 99976542211100 000 000 0234678889999999 888989999
Q ss_pred HhhhccCCcEEEEEEe---ccEEEEEEcCHHHHHHHHHHcCCCccC-CeEEEEEEee
Q 014384 169 ERHFEPYGKIISVRIR---RNFAFVQYEVQEDATRALDATNMSKLT-DRVISVEYAV 221 (425)
Q Consensus 169 ~~~f~~~G~v~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~i~v~~a~ 221 (425)
..+|.+|.....|.+. .+.|||+|.+...|..|...|++..|. ...+.|.++.
T Consensus 164 ~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 164 SDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 9999999988888775 679999999999999999999998887 7888887764
No 34
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=2.8e-18 Score=144.41 Aligned_cols=76 Identities=38% Similarity=0.631 Sum_probs=71.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE---eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEeccc
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM---KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHE 128 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i---~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~ 128 (425)
..+++||||||+..+|+.||+.+|.+||+|..|+| +.|||||||+++.+|++|+..|||+.| +|..|.|+++...
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~--cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDI--CGSRIRVELSTGR 85 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccc--cCceEEEEeecCC
Confidence 34789999999999999999999999999999999 589999999999999999999999999 9999999999876
Q ss_pred c
Q 014384 129 R 129 (425)
Q Consensus 129 ~ 129 (425)
.
T Consensus 86 ~ 86 (195)
T KOG0107|consen 86 P 86 (195)
T ss_pred c
Confidence 5
No 35
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.80 E-value=4.2e-18 Score=174.31 Aligned_cols=116 Identities=14% Similarity=0.243 Sum_probs=86.0
Q ss_pred eeeEEEEeCCCCccccccc-CCcceeecc-----cccccc--h---hhhhhhcCCCceEEEcCCCCCCCHHHHHHHHhhc
Q 014384 10 CHYLLIVYSHSVWPVQKKY-LPRRLYVLG-----FRRSHS--Q---LSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRY 78 (425)
Q Consensus 10 ~~y~~i~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~--~---~~~~~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~ 78 (425)
..||||.|.+...+..+.. ++..+.... ...... . ..........++|||+||++++++++|+++|+.|
T Consensus 149 kGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~F 228 (612)
T TIGR01645 149 KGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAF 228 (612)
T ss_pred CCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhc
Confidence 5699999998776555542 222221111 100000 0 0001122345799999999999999999999999
Q ss_pred CCeeEEEE--------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEecc
Q 014384 79 GKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKH 127 (425)
Q Consensus 79 G~V~~v~i--------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~ 127 (425)
|+|..|.| ++|||||+|.+.++|.+||..|||..| .|+.|.|.++..
T Consensus 229 G~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~el--gGr~LrV~kAi~ 283 (612)
T TIGR01645 229 GEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDL--GGQYLRVGKCVT 283 (612)
T ss_pred CCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCee--CCeEEEEEecCC
Confidence 99999988 379999999999999999999999999 799999998764
No 36
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.79 E-value=8.7e-20 Score=178.03 Aligned_cols=170 Identities=29% Similarity=0.444 Sum_probs=142.5
Q ss_pred hhhcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcE
Q 014384 48 AAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRR 119 (425)
Q Consensus 48 ~~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~ 119 (425)
..++...+|||+--|...+++.+|++||+.+|+|.+|.| ++|+|||+|.|.+.+..|| .|.|..+ .|.+
T Consensus 173 ~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrl--lg~p 249 (549)
T KOG0147|consen 173 SPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRL--LGVP 249 (549)
T ss_pred CchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcc--cCce
Confidence 345567799999999999999999999999999999988 4899999999999999999 9999999 7999
Q ss_pred EEEEEeccccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEE
Q 014384 120 LRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQ 191 (425)
Q Consensus 120 l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~ 191 (425)
|.|+.....+...... ..+........|...|||+|| ...+++++|..+|+.||.|..|.++ +||+||+
T Consensus 250 v~vq~sEaeknr~a~~--s~a~~~k~~~~p~~rl~vgnL-HfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~ 326 (549)
T KOG0147|consen 250 VIVQLSEAEKNRAANA--SPALQGKGFTGPMRRLYVGNL-HFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFIT 326 (549)
T ss_pred eEecccHHHHHHHHhc--cccccccccccchhhhhhccc-ccCchHHHHhhhccCcccceeeeeccccccccccCcceEE
Confidence 9999876655331111 111111222333344999999 7889999999999999999999885 6899999
Q ss_pred EcCHHHHHHHHHHcCCCccCCeEEEEEEeeeC
Q 014384 192 YEVQEDATRALDATNMSKLTDRVISVEYAVRD 223 (425)
Q Consensus 192 f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 223 (425)
|.+.++|.+|+++|||.+|.|+.|+|......
T Consensus 327 f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 327 FVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred EecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 99999999999999999999999999886654
No 37
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=5.3e-18 Score=142.75 Aligned_cols=77 Identities=29% Similarity=0.427 Sum_probs=71.3
Q ss_pred CCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe---ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeCC
Q 014384 148 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR---RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDD 224 (425)
Q Consensus 148 ~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~ 224 (425)
...++|||+|| +..+++.+|+.+|..||+|..|+|. .|||||||+++.||.+|+..|+|..|+|..|.|++.....
T Consensus 8 ~~~~kVYVGnL-~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 8 NGNTKVYVGNL-GSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CCCceEEeccC-CCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 34689999999 7899999999999999999999994 7899999999999999999999999999999999998764
Q ss_pred C
Q 014384 225 D 225 (425)
Q Consensus 225 ~ 225 (425)
.
T Consensus 87 r 87 (195)
T KOG0107|consen 87 R 87 (195)
T ss_pred c
Confidence 4
No 38
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.77 E-value=3.1e-18 Score=167.29 Aligned_cols=169 Identities=24% Similarity=0.466 Sum_probs=130.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEE
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 123 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~ 123 (425)
.++..||||||-.++|+++|..+|+.||.|+.|.+ ++||+||+|.+.++|.+|+..|||.+| -|+.|+|.
T Consensus 276 ~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfel--AGr~ikV~ 353 (549)
T KOG0147|consen 276 GPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFEL--AGRLIKVS 353 (549)
T ss_pred cchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhcccee--cCceEEEE
Confidence 34555999999999999999999999999999988 389999999999999999999999888 89999997
Q ss_pred EeccccCCCCC-------------C-----CC-----------CC----------------------CC-----CCCCCC
Q 014384 124 WTKHERGIRRP-------------G-----GG-----------SS----------------------AR-----RPSTNT 147 (425)
Q Consensus 124 ~a~~~~~~~~~-------------~-----~~-----------~~----------------------~~-----~~~~~~ 147 (425)
........... + ++ .. .. ....+.
T Consensus 354 ~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~ 433 (549)
T KOG0147|consen 354 VVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPA 433 (549)
T ss_pred EeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCcc
Confidence 54322111100 0 00 00 00 001112
Q ss_pred -------CCCcEEEEEcC-CCCCCCH--------HHHHhhhccCCcEEEEEEec---cEEEEEEcCHHHHHHHHHHcCCC
Q 014384 148 -------RPSKTLFVINF-DPYHTRT--------RDLERHFEPYGKIISVRIRR---NFAFVQYEVQEDATRALDATNMS 208 (425)
Q Consensus 148 -------~~~~~l~V~nl-~p~~~~~--------~~L~~~f~~~G~v~~v~~~~---g~afV~f~~~~~A~~A~~~l~g~ 208 (425)
.+..|+.+.|+ +|...|+ ++|.+.+.+||+|..|.+-+ |+.||.|.+.++|..|+.+|||.
T Consensus 434 ~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgr 513 (549)
T KOG0147|consen 434 DASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGR 513 (549)
T ss_pred ccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhh
Confidence 55677778776 4433332 66778889999999999953 79999999999999999999999
Q ss_pred ccCCeEEEEEEeee
Q 014384 209 KLTDRVISVEYAVR 222 (425)
Q Consensus 209 ~~~g~~i~v~~a~~ 222 (425)
+|.|+.|++.|-..
T Consensus 514 WF~gr~Ita~~~~~ 527 (549)
T KOG0147|consen 514 WFAGRMITAKYLPL 527 (549)
T ss_pred hhccceeEEEEeeh
Confidence 99999999998654
No 39
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=99.73 E-value=2.7e-18 Score=160.65 Aligned_cols=154 Identities=16% Similarity=0.148 Sum_probs=111.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-----------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEE
Q 014384 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-----------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 122 (425)
Q Consensus 54 ~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~-----------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V 122 (425)
...|.|.||.+.+|.++|..||+.+|+|.++.|. ...|||.|.|...+..|.+..|.++| ++.|.|
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfv---draliv 83 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFV---DRALIV 83 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceee---eeeEEE
Confidence 4489999999999999999999999999998882 57999999999999999987787777 555555
Q ss_pred E-EeccccCCC----------------CCCCCCC---------CCCC----CCCC----------CCCcEEEEEcCCCCC
Q 014384 123 E-WTKHERGIR----------------RPGGGSS---------ARRP----STNT----------RPSKTLFVINFDPYH 162 (425)
Q Consensus 123 ~-~a~~~~~~~----------------~~~~~~~---------~~~~----~~~~----------~~~~~l~V~nl~p~~ 162 (425)
- +........ .+++-.. ..+. .+.. ....+|+|++| +..
T Consensus 84 ~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl-~~~ 162 (479)
T KOG4676|consen 84 RPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSL-ISA 162 (479)
T ss_pred EecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcc-hhh
Confidence 4 433322111 0000000 0000 0000 11156888888 666
Q ss_pred CCHHHHHhhhccCCcEEEEEEe----ccEEEEEEcCHHHHHHHHHHcCCCccCC
Q 014384 163 TRTRDLERHFEPYGKIISVRIR----RNFAFVQYEVQEDATRALDATNMSKLTD 212 (425)
Q Consensus 163 ~~~~~L~~~f~~~G~v~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g 212 (425)
+...++..+|+.+|.|.+..+. .-+|.|+|........|+. ++|.++.-
T Consensus 163 ~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k~ 215 (479)
T KOG4676|consen 163 AILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERKR 215 (479)
T ss_pred hcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhhh
Confidence 6688999999999999988885 3488899999999999997 56666653
No 40
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.72 E-value=1.7e-17 Score=156.96 Aligned_cols=158 Identities=19% Similarity=0.429 Sum_probs=133.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEE
Q 014384 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 124 (425)
Q Consensus 53 ~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~ 124 (425)
..++|||++|++.+|++.|.+.|.+||+|.+|.++ +||+||+|++++.+..+|. .....| +|+.|.+.-
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~--dgr~ve~k~ 81 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKL--DGRSVEPKR 81 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-cccccc--CCcccccee
Confidence 67899999999999999999999999999999885 5999999999999999984 334445 789888887
Q ss_pred eccccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHH
Q 014384 125 TKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQE 196 (425)
Q Consensus 125 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~ 196 (425)
|.......... .......|||++| +..+++++|++.|++||.|..+.++ ++|+||.|.+++
T Consensus 82 av~r~~~~~~~----------~~~~tkkiFvGG~-~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~ 150 (311)
T KOG4205|consen 82 AVSREDQTKVG----------RHLRTKKIFVGGL-PPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSED 150 (311)
T ss_pred ccCcccccccc----------cccceeEEEecCc-CCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEecccc
Confidence 76544222221 1225779999999 8899999999999999998888875 789999999999
Q ss_pred HHHHHHHHcCCCccCCeEEEEEEeeeCCC
Q 014384 197 DATRALDATNMSKLTDRVISVEYAVRDDD 225 (425)
Q Consensus 197 ~A~~A~~~l~g~~~~g~~i~v~~a~~~~~ 225 (425)
.+.+++. +..+.|+|+.+.|..|.++..
T Consensus 151 sVdkv~~-~~f~~~~gk~vevkrA~pk~~ 178 (311)
T KOG4205|consen 151 SVDKVTL-QKFHDFNGKKVEVKRAIPKEV 178 (311)
T ss_pred ccceecc-cceeeecCceeeEeeccchhh
Confidence 9999986 678899999999999988653
No 41
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.71 E-value=8.3e-16 Score=132.68 Aligned_cols=78 Identities=37% Similarity=0.647 Sum_probs=72.7
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 121 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~ 121 (425)
....+++|.|-||.+.+|.++|..+|++||.|-+|.|+ +|||||-|.+..+|++||++|+|..| +|+.|.
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~l--dgRelr 86 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVL--DGRELR 86 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceee--ccceee
Confidence 34678999999999999999999999999999999993 89999999999999999999999999 999999
Q ss_pred EEEecccc
Q 014384 122 VEWTKHER 129 (425)
Q Consensus 122 V~~a~~~~ 129 (425)
|++|....
T Consensus 87 Vq~arygr 94 (256)
T KOG4207|consen 87 VQMARYGR 94 (256)
T ss_pred ehhhhcCC
Confidence 99987643
No 42
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=1.8e-17 Score=147.98 Aligned_cols=173 Identities=22% Similarity=0.432 Sum_probs=139.9
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE-------eCCEEEEEEcCHHHHHHHHHhcCCCee-cCCCcEEEE
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM-------KSGFAFIYMDDERDAEDAIRGLDRTEF-GRKGRRLRV 122 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i-------~kg~aFV~F~~~~~A~~A~~~lng~~i-g~~gr~l~V 122 (425)
....++||||.|...-.|+|+..||..||.|++|.+ +||+|||.|.+..+|..||..|+|..- ..-...|.|
T Consensus 16 g~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 16 GGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVV 95 (371)
T ss_pred CccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEE
Confidence 346789999999999999999999999999999998 499999999999999999999999643 225668999
Q ss_pred EEeccccCCC--------------CC----CC------------------------------------------------
Q 014384 123 EWTKHERGIR--------------RP----GG------------------------------------------------ 136 (425)
Q Consensus 123 ~~a~~~~~~~--------------~~----~~------------------------------------------------ 136 (425)
+|+...++.. .+ .+
T Consensus 96 K~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~ 175 (371)
T KOG0146|consen 96 KFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLA 175 (371)
T ss_pred EeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccc
Confidence 9986654110 00 00
Q ss_pred --------C--------------------CC----------CC-------------------------------------
Q 014384 137 --------G--------------------SS----------AR------------------------------------- 141 (425)
Q Consensus 137 --------~--------------------~~----------~~------------------------------------- 141 (425)
+ .+ ..
T Consensus 176 A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~A 255 (371)
T KOG0146|consen 176 AAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAA 255 (371)
T ss_pred cCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhh
Confidence 0 00 00
Q ss_pred ---------------------CCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEE
Q 014384 142 ---------------------RPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQY 192 (425)
Q Consensus 142 ---------------------~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f 192 (425)
......+.++.|||..| |....+.+|.+.|-.||.|+..++. +.|+||.|
T Consensus 256 aypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHL-PQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSf 334 (371)
T KOG0146|consen 256 AYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHL-PQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSF 334 (371)
T ss_pred hcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeC-chhhccHHHHHHhccccceeeeeeeehhccccccceeeEec
Confidence 00123455699999999 8888899999999999999888773 77999999
Q ss_pred cCHHHHHHHHHHcCCCccCCeEEEEEEeeeCC
Q 014384 193 EVQEDATRALDATNMSKLTDRVISVEYAVRDD 224 (425)
Q Consensus 193 ~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~ 224 (425)
.++..|+.||..|||..|+=+.|+|....+++
T Consensus 335 DNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkd 366 (371)
T KOG0146|consen 335 DNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 366 (371)
T ss_pred CCchhHHHHHHHhcchhhhhhhhhhhhcCccc
Confidence 99999999999999999999999998876653
No 43
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.70 E-value=2.7e-16 Score=137.19 Aligned_cols=162 Identities=23% Similarity=0.376 Sum_probs=123.2
Q ss_pred hhcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe---------CCEEEEEEcCHHHHHHHHHhcCCCeecC-CCc
Q 014384 49 AFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK---------SGFAFIYMDDERDAEDAIRGLDRTEFGR-KGR 118 (425)
Q Consensus 49 ~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~---------kg~aFV~F~~~~~A~~A~~~lng~~ig~-~gr 118 (425)
.+....+||||.+||.++...+|..||..|--.+.+.|+ +-+|||.|.+..+|.+|+.+|||+.|-. .+.
T Consensus 29 ~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~s 108 (284)
T KOG1457|consen 29 DEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGS 108 (284)
T ss_pred ccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCc
Confidence 455668999999999999999999999998666666662 4699999999999999999999998843 588
Q ss_pred EEEEEEeccccCCCCCCCCC-----------------------------------------CCCCC--------------
Q 014384 119 RLRVEWTKHERGIRRPGGGS-----------------------------------------SARRP-------------- 143 (425)
Q Consensus 119 ~l~V~~a~~~~~~~~~~~~~-----------------------------------------~~~~~-------------- 143 (425)
.|+|++|+...+.++..... .+...
T Consensus 109 tLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~ 188 (284)
T KOG1457|consen 109 TLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDS 188 (284)
T ss_pred eeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhh
Confidence 99999987654322111100 00000
Q ss_pred ---------------CCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--cc--EEEEEEcCHHHHHHHHHH
Q 014384 144 ---------------STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RN--FAFVQYEVQEDATRALDA 204 (425)
Q Consensus 144 ---------------~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--~g--~afV~f~~~~~A~~A~~~ 204 (425)
........||||.|| ...+++++|+++|..|-....++|. .| .||++|++.+.|..|+..
T Consensus 189 ~~P~a~a~l~ks~q~~~~~~acstlfianl-~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~ 267 (284)
T KOG1457|consen 189 KAPSANAHLEKSSQGGSGARACSTLFIANL-GPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNH 267 (284)
T ss_pred cCCcccchhhhhhcccccchhhhhHhhhcc-CCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHH
Confidence 000111258999999 5678899999999999877777774 33 899999999999999999
Q ss_pred cCCCccC
Q 014384 205 TNMSKLT 211 (425)
Q Consensus 205 l~g~~~~ 211 (425)
|+|..|.
T Consensus 268 lqg~~~s 274 (284)
T KOG1457|consen 268 LQGNLLS 274 (284)
T ss_pred hhcceec
Confidence 9987653
No 44
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=5.1e-16 Score=153.83 Aligned_cols=171 Identities=20% Similarity=0.326 Sum_probs=132.6
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEE
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 122 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V 122 (425)
......|||+|||..+++.++.+++..||.+....+ ++||||.+|.++.-...|+..|||+.+ .++.|.|
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~l--gd~~lvv 363 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQL--GDKKLVV 363 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhh--cCceeEe
Confidence 344578999999999999999999999999887666 489999999999999999999999999 5899999
Q ss_pred EEeccccCCCCCCCC--------CCCCCCCCCCCCCcEEEEEcC-CCCCC-CH-------HHHHhhhccCCcEEEEEEe-
Q 014384 123 EWTKHERGIRRPGGG--------SSARRPSTNTRPSKTLFVINF-DPYHT-RT-------RDLERHFEPYGKIISVRIR- 184 (425)
Q Consensus 123 ~~a~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~V~nl-~p~~~-~~-------~~L~~~f~~~G~v~~v~~~- 184 (425)
+.|............ ...........+...|.+.|+ ++... .+ ++|+..+.+||.|..|.++
T Consensus 364 q~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr 443 (500)
T KOG0120|consen 364 QRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPR 443 (500)
T ss_pred ehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCC
Confidence 988765433322221 001112344555666666554 11111 11 3456677899999999996
Q ss_pred ----------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeC
Q 014384 185 ----------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 223 (425)
Q Consensus 185 ----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 223 (425)
.|..||+|.+.++|+.|..+|+|.+|.|++|...|...+
T Consensus 444 ~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 444 PYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred CCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 368999999999999999999999999999999987653
No 45
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.65 E-value=8.9e-16 Score=131.12 Aligned_cols=77 Identities=27% Similarity=0.531 Sum_probs=71.3
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEE
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 122 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V 122 (425)
....++|||+||++.+|+++|+++|.+||+|..|.|. +|||||+|.+.++|++||..||+..| +|+.|+|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i--~Gr~l~V 108 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKEL--NGRHIRV 108 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEE
Confidence 3557899999999999999999999999999999883 79999999999999999999999999 8999999
Q ss_pred EEecccc
Q 014384 123 EWTKHER 129 (425)
Q Consensus 123 ~~a~~~~ 129 (425)
+|+....
T Consensus 109 ~~a~~~~ 115 (144)
T PLN03134 109 NPANDRP 115 (144)
T ss_pred EeCCcCC
Confidence 9997654
No 46
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=1.6e-15 Score=152.34 Aligned_cols=168 Identities=25% Similarity=0.391 Sum_probs=135.4
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-CC-EEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEeccc
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-SG-FAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHE 128 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~-kg-~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~ 128 (425)
....+.|+|+|||..+..++|..+|..||.|..|.|+ -| .|+|+|-++.+|.+|+..|+...+ ...+|.++|+...
T Consensus 382 ~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G~~aiv~fl~p~eAr~Afrklaysr~--k~~plyle~aP~d 459 (725)
T KOG0110|consen 382 ERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGGTGAIVEFLNPLEARKAFRKLAYSRF--KSAPLYLEWAPED 459 (725)
T ss_pred hhhcceeeeccCccccccHHHHHHhhcccccceeecCcccceeeeeecCccchHHHHHHhchhhh--ccCccccccChhh
Confidence 3445899999999999999999999999999999885 33 599999999999999999999998 8999999987543
Q ss_pred cCCCCC------CC---C-----------CCCCCC-------------CCCCCCC-cEEEEEcCCCCCCCHHHHHhhhcc
Q 014384 129 RGIRRP------GG---G-----------SSARRP-------------STNTRPS-KTLFVINFDPYHTRTRDLERHFEP 174 (425)
Q Consensus 129 ~~~~~~------~~---~-----------~~~~~~-------------~~~~~~~-~~l~V~nl~p~~~~~~~L~~~f~~ 174 (425)
.....+ +. . ...... ....... +.|||.|| .+.++.++|..+|..
T Consensus 460 vf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNl-nf~Tt~e~l~~~F~k 538 (725)
T KOG0110|consen 460 VFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNL-NFDTTLEDLEDLFSK 538 (725)
T ss_pred hccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcC-CcccchhHHHHHHHh
Confidence 321000 00 0 000000 0011122 33999999 799999999999999
Q ss_pred CCcEEEEEEe-----------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEee
Q 014384 175 YGKIISVRIR-----------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221 (425)
Q Consensus 175 ~G~v~~v~~~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 221 (425)
.|.|..+.|. .|||||+|.+.++|..|+..|+|+.|+|+.|.|.++.
T Consensus 539 ~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 539 QGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred cCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 9999999884 2899999999999999999999999999999999998
No 47
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.63 E-value=1.1e-14 Score=135.08 Aligned_cols=172 Identities=19% Similarity=0.312 Sum_probs=132.3
Q ss_pred hhcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEE-------eCCEEEEEEcCHHHHHHHHHhcCCCee
Q 014384 49 AFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDR--------VDM-------KSGFAFIYMDDERDAEDAIRGLDRTEF 113 (425)
Q Consensus 49 ~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~--------v~i-------~kg~aFV~F~~~~~A~~A~~~lng~~i 113 (425)
..+..++.|||.|||.++|.+++.++|++||.|.. |+| .+|-|.|.|-..+++..|+..|++..|
T Consensus 129 ~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 129 PEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred cccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccc
Confidence 34556788999999999999999999999998753 444 289999999999999999999999999
Q ss_pred cCCCcEEEEEEeccccCCCCCCCCC----------------------CCCCCCCCCCCCcEEEEEcCC-C--CCCC----
Q 014384 114 GRKGRRLRVEWTKHERGIRRPGGGS----------------------SARRPSTNTRPSKTLFVINFD-P--YHTR---- 164 (425)
Q Consensus 114 g~~gr~l~V~~a~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~l~V~nl~-p--~~~~---- 164 (425)
.|+.|+|+.|+-........... ............++|.|.|+- | ...+
T Consensus 209 --rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~ 286 (382)
T KOG1548|consen 209 --RGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLL 286 (382)
T ss_pred --cCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHH
Confidence 79999999886543211110000 001112233445788888871 1 1122
Q ss_pred ---HHHHHhhhccCCcEEEEEE----eccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeee
Q 014384 165 ---TRDLERHFEPYGKIISVRI----RRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 222 (425)
Q Consensus 165 ---~~~L~~~f~~~G~v~~v~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 222 (425)
+++|.+-+.+||.|..|.+ +.|.+.|.|.+.++|..||+.|+|..|+|+.|...+-..
T Consensus 287 ~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 287 NDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDG 351 (382)
T ss_pred HHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCC
Confidence 3566777899999999988 478999999999999999999999999999999887544
No 48
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=7.2e-16 Score=123.18 Aligned_cols=84 Identities=24% Similarity=0.446 Sum_probs=75.9
Q ss_pred hhhhhhcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcCHHHHHHHHHhcCCCeecCC
Q 014384 45 LSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRK 116 (425)
Q Consensus 45 ~~~~~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~ 116 (425)
.+...+....+||||+||+..+||++|.+||++||+|..|.| +.|||||+|...++|+.||..+||..+ +
T Consensus 27 ~e~~~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrL--d 104 (153)
T KOG0121|consen 27 EEQLEALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRL--D 104 (153)
T ss_pred HHHHHHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcc--c
Confidence 344556778899999999999999999999999999999999 379999999999999999999999999 9
Q ss_pred CcEEEEEEeccccC
Q 014384 117 GRRLRVEWTKHERG 130 (425)
Q Consensus 117 gr~l~V~~a~~~~~ 130 (425)
.++|.|.|.-.-..
T Consensus 105 dr~ir~D~D~GF~e 118 (153)
T KOG0121|consen 105 DRPIRIDWDAGFVE 118 (153)
T ss_pred ccceeeeccccchh
Confidence 99999999766543
No 49
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.61 E-value=2.6e-15 Score=146.26 Aligned_cols=118 Identities=15% Similarity=0.220 Sum_probs=84.7
Q ss_pred eeEEEEeCCCCccccccc-CCcceeecccccccchhhhhhhcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--
Q 014384 11 HYLLIVYSHSVWPVQKKY-LPRRLYVLGFRRSHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-- 87 (425)
Q Consensus 11 ~y~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~-- 87 (425)
.||||+|.+...+..+.. +....+ ...................++|||+|||..+|+++|+++|++||+|+.|.|.
T Consensus 150 GyaFVeF~~~e~A~~Ai~~LnG~~l-~gr~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d 228 (346)
T TIGR01659 150 GYAFVDFGSEADSQRAIKNLNGITV-RNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRD 228 (346)
T ss_pred cEEEEEEccHHHHHHHHHHcCCCcc-CCceeeeecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeec
Confidence 589999988776655552 121111 1110000000011123346789999999999999999999999999998883
Q ss_pred ------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEecccc
Q 014384 88 ------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 129 (425)
Q Consensus 88 ------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~~ 129 (425)
+|||||+|.+.++|++||+.||++.|...++.|.|.|+....
T Consensus 229 ~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 229 KLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred CCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCccc
Confidence 589999999999999999999999883234789999987643
No 50
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.58 E-value=5.1e-14 Score=132.96 Aligned_cols=166 Identities=27% Similarity=0.333 Sum_probs=135.1
Q ss_pred CceEEEcCCC-CCCCHHHHHHHHhhcCCeeEEEE---eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEecccc
Q 014384 54 MRPIFCGNFE-YDARQSDLERLFRRYGKVDRVDM---KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 129 (425)
Q Consensus 54 ~~~l~V~nL~-~~~t~~~L~~lF~~~G~V~~v~i---~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~~ 129 (425)
+.+|.|.||. ..+|.+-|..||+-||.|..|+| ++..|.|+|.|...|..|++.|+|..| .|+.|+|.+++...
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l--~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKL--YGKKLRVTLSKHTN 374 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhccee--cCceEEEeeccCcc
Confidence 6889999996 57899999999999999999999 478999999999999999999999999 79999999998655
Q ss_pred CCCCCCCCCC-------------------CCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEE-e---cc
Q 014384 130 GIRRPGGGSS-------------------ARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI-R---RN 186 (425)
Q Consensus 130 ~~~~~~~~~~-------------------~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~-~---~g 186 (425)
......+... .+.-....+|..+|++.|+ |..+++++|+.+|..-|....... . +.
T Consensus 375 vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsni-p~svsee~lk~~f~~~g~~vkafkff~kd~k 453 (492)
T KOG1190|consen 375 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNI-PPSVSEEDLKNLFQEPGGQVKAFKFFQKDRK 453 (492)
T ss_pred ccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccC-CcccchhHHHHhhhcCCceEEeeeecCCCcc
Confidence 3221111000 0111223477789999999 888999999999999886654443 2 46
Q ss_pred EEEEEEcCHHHHHHHHHHcCCCccCCe-EEEEEEeee
Q 014384 187 FAFVQYEVQEDATRALDATNMSKLTDR-VISVEYAVR 222 (425)
Q Consensus 187 ~afV~f~~~~~A~~A~~~l~g~~~~g~-~i~v~~a~~ 222 (425)
+|++.+.+.++|..|+..+++..+++. .|.|.|++.
T Consensus 454 mal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 454 MALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred eeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 999999999999999999999998854 899999864
No 51
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.57 E-value=4e-14 Score=133.65 Aligned_cols=171 Identities=20% Similarity=0.240 Sum_probs=136.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE-eC--C-EEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEeccc
Q 014384 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM-KS--G-FAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHE 128 (425)
Q Consensus 53 ~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i-~k--g-~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~ 128 (425)
..-.++|+|+-+-||-+.|.++|++||.|..|.- .| + .|.|+|.+++.|..|..+|+|..|....+.|+|.|++-.
T Consensus 149 ~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt 228 (492)
T KOG1190|consen 149 PVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLT 228 (492)
T ss_pred eeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcc
Confidence 4457889999999999999999999999987655 32 3 578999999999999999999999866788999887543
Q ss_pred cCCCCCCC-------------C-----------------------CCCCC--------C-CCCCCC--CcEEEEEcCCCC
Q 014384 129 RGIRRPGG-------------G-----------------------SSARR--------P-STNTRP--SKTLFVINFDPY 161 (425)
Q Consensus 129 ~~~~~~~~-------------~-----------------------~~~~~--------~-~~~~~~--~~~l~V~nl~p~ 161 (425)
....+... + ..+.+ . .....+ +..|.|.||.++
T Consensus 229 ~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~ 308 (492)
T KOG1190|consen 229 DLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEE 308 (492)
T ss_pred cceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchh
Confidence 31110000 0 00000 0 111111 578899999999
Q ss_pred CCCHHHHHhhhccCCcEEEEEEe---ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeC
Q 014384 162 HTRTRDLERHFEPYGKIISVRIR---RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 223 (425)
Q Consensus 162 ~~~~~~L~~~f~~~G~v~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 223 (425)
.+|.+.|..+|.-||.|..|.|. +..|+|+|.+...|+-|+..|+|..+.|+.|+|.+++-.
T Consensus 309 ~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 309 AVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHT 373 (492)
T ss_pred ccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCc
Confidence 99999999999999999999995 569999999999999999999999999999999998764
No 52
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.57 E-value=1.9e-13 Score=127.75 Aligned_cols=173 Identities=18% Similarity=0.186 Sum_probs=139.2
Q ss_pred cCCCceEEEcCC--CCCCCHHHHHHHHhhcCCeeEEEEe--CC-EEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEe
Q 014384 51 EAMMRPIFCGNF--EYDARQSDLERLFRRYGKVDRVDMK--SG-FAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 125 (425)
Q Consensus 51 ~~~~~~l~V~nL--~~~~t~~~L~~lF~~~G~V~~v~i~--kg-~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a 125 (425)
...++.|.++=| -+.+|.+.|.++...+|+|..|.|. .| .|.|||++.+.|++|.+.|||..|.-...+|+|+||
T Consensus 117 ~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyA 196 (494)
T KOG1456|consen 117 ATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYA 196 (494)
T ss_pred CCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEEec
Confidence 344555555544 4678999999999999999998884 23 799999999999999999999999767889999999
Q ss_pred ccccCCC-----CC--------------CCC------C-----------------------------------------C
Q 014384 126 KHERGIR-----RP--------------GGG------S-----------------------------------------S 139 (425)
Q Consensus 126 ~~~~~~~-----~~--------------~~~------~-----------------------------------------~ 139 (425)
++....- .. +.+ . .
T Consensus 197 kP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~ 276 (494)
T KOG1456|consen 197 KPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGR 276 (494)
T ss_pred CcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCC
Confidence 8765110 00 000 0 0
Q ss_pred CCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe---ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEE
Q 014384 140 ARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR---RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 216 (425)
Q Consensus 140 ~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 216 (425)
.........+.+.++|.+|+...++-+.|..+|..||.|..|.++ .|.|+|++.+..+.+.|+..||+..+.|.+|.
T Consensus 277 g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~ 356 (494)
T KOG1456|consen 277 GYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLN 356 (494)
T ss_pred CCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEE
Confidence 000113345668899999998999999999999999999999987 57999999999999999999999999999999
Q ss_pred EEEeeeC
Q 014384 217 VEYAVRD 223 (425)
Q Consensus 217 v~~a~~~ 223 (425)
|.+++..
T Consensus 357 v~~SkQ~ 363 (494)
T KOG1456|consen 357 VCVSKQN 363 (494)
T ss_pred Eeecccc
Confidence 9998775
No 53
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.56 E-value=8.9e-14 Score=132.19 Aligned_cols=166 Identities=29% Similarity=0.470 Sum_probs=131.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHh-hcCCeeEEEE-------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEE
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFR-RYGKVDRVDM-------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 123 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~-~~G~V~~v~i-------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~ 123 (425)
...+.|||+|||+++..++|++||. +.|+|+.|.| .+|+|.|||+++|.+++|++.||...+ .|++|+|.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~--~GR~l~vK 119 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEV--NGRELVVK 119 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccc--cCceEEEe
Confidence 3456799999999999999999998 5799999998 489999999999999999999999999 89999997
Q ss_pred EeccccCCC--------------------------CCCC-C-----C--------------CC-----------------
Q 014384 124 WTKHERGIR--------------------------RPGG-G-----S--------------SA----------------- 140 (425)
Q Consensus 124 ~a~~~~~~~--------------------------~~~~-~-----~--------------~~----------------- 140 (425)
-.......+ .... + . ..
T Consensus 120 Ed~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl 199 (608)
T KOG4212|consen 120 EDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGL 199 (608)
T ss_pred ccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccc
Confidence 543321000 0000 0 0 00
Q ss_pred ------CCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe-------ccEEEEEEcCHHHHHHHHHHcCC
Q 014384 141 ------RRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNM 207 (425)
Q Consensus 141 ------~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g 207 (425)
..-....+...++||.|| .+.+....|++.|.-.|.|..|.+. +|++.|+|.++-+|.+||..|++
T Consensus 200 ~~~Flr~~h~f~pPl~~k~fvanl-~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 200 SASFLRSLHIFSPPLHNKVFVANL-DYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred hhhhhhhccCCCCCccceeeeecc-ccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhcc
Confidence 000113344578999999 6889899999999999999888773 68999999999999999999998
Q ss_pred CccCCeEEEEEEe
Q 014384 208 SKLTDRVISVEYA 220 (425)
Q Consensus 208 ~~~~g~~i~v~~a 220 (425)
.-+..++..+...
T Consensus 279 ~g~~~~~~~~Rl~ 291 (608)
T KOG4212|consen 279 QGLFDRRMTVRLD 291 (608)
T ss_pred CCCccccceeecc
Confidence 7777777777664
No 54
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.55 E-value=1.1e-13 Score=118.13 Aligned_cols=79 Identities=24% Similarity=0.393 Sum_probs=72.0
Q ss_pred CCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEE
Q 014384 145 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 216 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 216 (425)
......++|||+|| +..+++++|+++|++||.|..|.|+ ++||||+|.+.++|+.||+.||+..|+|+.|.
T Consensus 29 ~~~~~~~~lfVgnL-~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~ 107 (144)
T PLN03134 29 SLRLMSTKLFIGGL-SWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIR 107 (144)
T ss_pred cccCCCCEEEEeCC-CCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 33456789999999 8899999999999999999999985 68999999999999999999999999999999
Q ss_pred EEEeeeCC
Q 014384 217 VEYAVRDD 224 (425)
Q Consensus 217 v~~a~~~~ 224 (425)
|+++....
T Consensus 108 V~~a~~~~ 115 (144)
T PLN03134 108 VNPANDRP 115 (144)
T ss_pred EEeCCcCC
Confidence 99997653
No 55
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.55 E-value=1.9e-14 Score=107.23 Aligned_cols=63 Identities=30% Similarity=0.745 Sum_probs=59.4
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEE
Q 014384 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 121 (425)
Q Consensus 57 l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~-------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~ 121 (425)
|||+|||+++|+++|.++|++||.|..+.+. +++|||+|.+.++|++|+..|||..| .|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~--~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKI--NGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEE--TTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEE--CccCcC
Confidence 7999999999999999999999999998883 78999999999999999999999999 788875
No 56
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.52 E-value=2.1e-13 Score=132.09 Aligned_cols=160 Identities=19% Similarity=0.255 Sum_probs=122.5
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 123 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~ 123 (425)
+......|.+.+||+++|++||.+||+-|+ |+.+.+. .|-|||+|.+.+++++|| +++...+ ..+-|.|.
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Al-kkdR~~m--g~RYIEVf 81 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKAL-KKDRESM--GHRYIEVF 81 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHH-HhhHHHh--CCceEEEE
Confidence 445567889999999999999999999997 7777773 689999999999999999 7888888 58888887
Q ss_pred EeccccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEE-EEE-------eccEEEEEEcCH
Q 014384 124 WTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIIS-VRI-------RRNFAFVQYEVQ 195 (425)
Q Consensus 124 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~-v~~-------~~g~afV~f~~~ 195 (425)
-+........-. ............|-+.+| |+.|+++||.++|+..-.|.. |.+ +.|-|||+|+++
T Consensus 82 ~~~~~e~d~~~~-----~~g~~s~~~d~vVRLRGL-Pfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sq 155 (510)
T KOG4211|consen 82 TAGGAEADWVMR-----PGGPNSSANDGVVRLRGL-PFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQ 155 (510)
T ss_pred ccCCcccccccc-----CCCCCCCCCCceEEecCC-CccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCH
Confidence 765443211000 001111245678999999 999999999999998765555 323 257999999999
Q ss_pred HHHHHHHHHcCCCccCCeEEEEEEe
Q 014384 196 EDATRALDATNMSKLTDRVISVEYA 220 (425)
Q Consensus 196 ~~A~~A~~~l~g~~~~g~~i~v~~a 220 (425)
+.|++|+.. |...|+-+-|.|-.+
T Consensus 156 e~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 156 ESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred HHHHHHHHH-HHHhhccceEEeehh
Confidence 999999974 566677777777654
No 57
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.51 E-value=5.9e-14 Score=128.34 Aligned_cols=74 Identities=20% Similarity=0.370 Sum_probs=68.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE-----eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEecc
Q 014384 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM-----KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKH 127 (425)
Q Consensus 53 ~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i-----~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~ 127 (425)
..++|||+||++.+|+++|+++|+.||+|+.|.| .+|||||+|.++++|+.|| .|||..| .|+.|.|.++..
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~Al-lLnG~~l--~gr~V~Vt~a~~ 79 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETAL-LLSGATI--VDQSVTITPAED 79 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHH-HhcCCee--CCceEEEEeccC
Confidence 3579999999999999999999999999999999 3799999999999999999 6999999 899999999875
Q ss_pred cc
Q 014384 128 ER 129 (425)
Q Consensus 128 ~~ 129 (425)
..
T Consensus 80 ~~ 81 (260)
T PLN03120 80 YQ 81 (260)
T ss_pred CC
Confidence 43
No 58
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=2.8e-12 Score=116.88 Aligned_cols=78 Identities=33% Similarity=0.543 Sum_probs=72.1
Q ss_pred CCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEE
Q 014384 145 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 216 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 216 (425)
+...|-+||||+-| ++.+++..|+..|+.||+|+.|.|. +|||||+|.++.++..|.+..+|.+|+|+.|.
T Consensus 96 a~gDPy~TLFv~RL-nydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~ 174 (335)
T KOG0113|consen 96 AIGDPYKTLFVARL-NYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRIL 174 (335)
T ss_pred ccCCccceeeeeec-cccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEE
Confidence 44578899999999 8999999999999999999999995 78999999999999999999999999999999
Q ss_pred EEEeeeC
Q 014384 217 VEYAVRD 223 (425)
Q Consensus 217 v~~a~~~ 223 (425)
|.+....
T Consensus 175 VDvERgR 181 (335)
T KOG0113|consen 175 VDVERGR 181 (335)
T ss_pred EEecccc
Confidence 9986653
No 59
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=8.2e-14 Score=107.33 Aligned_cols=79 Identities=23% Similarity=0.388 Sum_probs=72.5
Q ss_pred hhcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE-----eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEE
Q 014384 49 AFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM-----KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 123 (425)
Q Consensus 49 ~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i-----~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~ 123 (425)
..+..++.|||.|||.++|.+++.+||++||+|..|.| .+|.|||.|++..+|++|+..|+|..+ +++.|.|-
T Consensus 13 lppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~--~~ryl~vl 90 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNV--DNRYLVVL 90 (124)
T ss_pred CChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhccccc--CCceEEEE
Confidence 45677899999999999999999999999999999999 389999999999999999999999999 89999998
Q ss_pred Eecccc
Q 014384 124 WTKHER 129 (425)
Q Consensus 124 ~a~~~~ 129 (425)
+.....
T Consensus 91 yyq~~~ 96 (124)
T KOG0114|consen 91 YYQPED 96 (124)
T ss_pred ecCHHH
Confidence 866543
No 60
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=2.4e-12 Score=117.38 Aligned_cols=75 Identities=31% Similarity=0.636 Sum_probs=70.0
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEE
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 122 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V 122 (425)
..+.+||||+-|+++++|..|+..|++||+|+.|.| ++|||||+|+++.+..+|.+..+|..| +|+.|.|
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~I--dgrri~V 175 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKI--DGRRILV 175 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCcee--cCcEEEE
Confidence 356799999999999999999999999999999998 489999999999999999999999999 9999999
Q ss_pred EEecc
Q 014384 123 EWTKH 127 (425)
Q Consensus 123 ~~a~~ 127 (425)
.+-..
T Consensus 176 DvERg 180 (335)
T KOG0113|consen 176 DVERG 180 (335)
T ss_pred Eeccc
Confidence 97654
No 61
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.47 E-value=9.8e-13 Score=125.19 Aligned_cols=72 Identities=28% Similarity=0.405 Sum_probs=65.8
Q ss_pred CCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe---ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEe
Q 014384 148 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR---RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220 (425)
Q Consensus 148 ~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 220 (425)
...++|||.|| |..+||+.|++.|..||.|.++.|+ +..+.|.|.++++|+.|+..|+|..++|+.|.|.|.
T Consensus 534 rKa~qIiirNl-P~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 534 RKACQIIIRNL-PFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccccEEEEecC-CccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 34489999999 9999999999999999999999995 346689999999999999999999999999999873
No 62
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.46 E-value=7.5e-13 Score=124.96 Aligned_cols=128 Identities=32% Similarity=0.565 Sum_probs=102.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEe
Q 014384 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 125 (425)
Q Consensus 54 ~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a 125 (425)
..+|||+||+..+|+++|.++|.+||.|..|.| .+|||||+|.+.++|..|+..|+|..| .|+.|.|.++
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~--~~~~~~v~~~ 192 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKEL--EGRPLRVQKA 192 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeE--CCceeEeecc
Confidence 699999999999999999999999999988887 379999999999999999999999999 8999999996
Q ss_pred cc--c-cCCCCC--C---CCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe
Q 014384 126 KH--E-RGIRRP--G---GGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR 184 (425)
Q Consensus 126 ~~--~-~~~~~~--~---~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~ 184 (425)
.. . ...... . .................+++.++ +..++..++..+|..+|.+..+.+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (306)
T COG0724 193 QPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNL-PLKTAEEELADLFKSRGDIVRASLP 258 (306)
T ss_pred ccccccccccccccchhhhccccccccccccccceeecccc-ccccchhHHHHhccccccceeeecc
Confidence 53 1 111110 0 00011222344556678999999 7888899999999999999777664
No 63
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.43 E-value=6.2e-13 Score=119.69 Aligned_cols=73 Identities=16% Similarity=0.197 Sum_probs=67.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-----CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEecc
Q 014384 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-----SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKH 127 (425)
Q Consensus 53 ~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~-----kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~ 127 (425)
...+|||+||++.+|+++|++||+.||+|..|.|. .+||||+|.++++|+.|+ .|||..| .++.|.|.....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l--~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATI--VDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCee--CCceEEEEeCcc
Confidence 35799999999999999999999999999999994 589999999999999999 8999999 799999987664
Q ss_pred c
Q 014384 128 E 128 (425)
Q Consensus 128 ~ 128 (425)
.
T Consensus 81 y 81 (243)
T PLN03121 81 Y 81 (243)
T ss_pred c
Confidence 3
No 64
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=4e-12 Score=118.52 Aligned_cols=76 Identities=18% Similarity=0.422 Sum_probs=68.8
Q ss_pred hhcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEE
Q 014384 49 AFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRL 120 (425)
Q Consensus 49 ~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l 120 (425)
++......|||..+.++++++||+..|+.||+|..|.| ++||+||+|.+..+-..|+..||=..| .|..|
T Consensus 205 eeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDL--GGQyL 282 (544)
T KOG0124|consen 205 EEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDL--GGQYL 282 (544)
T ss_pred HHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhc--ccceE
Confidence 34556789999999999999999999999999999999 489999999999999999999999899 59999
Q ss_pred EEEEec
Q 014384 121 RVEWTK 126 (425)
Q Consensus 121 ~V~~a~ 126 (425)
.|.-+.
T Consensus 283 RVGk~v 288 (544)
T KOG0124|consen 283 RVGKCV 288 (544)
T ss_pred eccccc
Confidence 996553
No 65
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=5e-13 Score=118.64 Aligned_cols=74 Identities=36% Similarity=0.617 Sum_probs=69.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEE
Q 014384 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 124 (425)
Q Consensus 53 ~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~ 124 (425)
++.+|-|.||+.++++++|++||..||.|..|.| ++|||||.|.+.++|.+||..|||.-+ +.-.|.|+|
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gy--d~LILrvEw 265 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGY--DNLILRVEW 265 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCccc--ceEEEEEEe
Confidence 5678999999999999999999999999999988 489999999999999999999999988 899999999
Q ss_pred eccc
Q 014384 125 TKHE 128 (425)
Q Consensus 125 a~~~ 128 (425)
+++.
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9864
No 66
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=3.9e-13 Score=108.54 Aligned_cols=74 Identities=23% Similarity=0.503 Sum_probs=69.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEe
Q 014384 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 125 (425)
Q Consensus 54 ~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a 125 (425)
.-.|||+++...+|+++|.+.|..||+|+.|.|+ +|||+|+|++.++|++|+..|||..| .|+.|.|.|+
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~l--l~q~v~VDw~ 149 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAEL--LGQNVSVDWC 149 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhh--hCCceeEEEE
Confidence 3579999999999999999999999999999994 89999999999999999999999999 8999999999
Q ss_pred cccc
Q 014384 126 KHER 129 (425)
Q Consensus 126 ~~~~ 129 (425)
-...
T Consensus 150 Fv~g 153 (170)
T KOG0130|consen 150 FVKG 153 (170)
T ss_pred EecC
Confidence 7654
No 67
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=5.8e-13 Score=122.75 Aligned_cols=77 Identities=27% Similarity=0.519 Sum_probs=71.0
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEE
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 124 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~ 124 (425)
....+.|+|.|||....+.||..+|++||+|.+|.| +|||+||+|+++++|+.|-++|||..| .|++|.|..
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~V--EGRkIEVn~ 170 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVV--EGRKIEVNN 170 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhccee--eceEEEEec
Confidence 344589999999999999999999999999999988 599999999999999999999999999 899999998
Q ss_pred ecccc
Q 014384 125 TKHER 129 (425)
Q Consensus 125 a~~~~ 129 (425)
+....
T Consensus 171 ATarV 175 (376)
T KOG0125|consen 171 ATARV 175 (376)
T ss_pred cchhh
Confidence 86543
No 68
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=1.1e-12 Score=117.87 Aligned_cols=79 Identities=22% Similarity=0.469 Sum_probs=73.6
Q ss_pred hhcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEec
Q 014384 49 AFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 126 (425)
Q Consensus 49 ~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~ 126 (425)
+....+++||||||+..+|+++|++.|+.||.|.+|.+ .+|||||.|++.|.|..||..+|+.+| .|..++|.|-+
T Consensus 159 Qssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNntei--~G~~VkCsWGK 236 (321)
T KOG0148|consen 159 QSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQGYAFVRFETKEAAAHAIVQMNNTEI--GGQLVRCSWGK 236 (321)
T ss_pred cCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecccceEEEEecchhhHHHHHHHhcCcee--CceEEEEeccc
Confidence 45667899999999999999999999999999999999 489999999999999999999999999 79999999987
Q ss_pred ccc
Q 014384 127 HER 129 (425)
Q Consensus 127 ~~~ 129 (425)
...
T Consensus 237 e~~ 239 (321)
T KOG0148|consen 237 EGD 239 (321)
T ss_pred cCC
Confidence 654
No 69
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.40 E-value=9.9e-13 Score=98.17 Aligned_cols=63 Identities=35% Similarity=0.694 Sum_probs=57.0
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEE
Q 014384 57 IFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 121 (425)
Q Consensus 57 l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~-------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~ 121 (425)
|||+|||+.+|+++|.++|..||.|..|.+. +++|||+|.++++|..|+..++|..| +|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~--~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEI--DGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEE--TTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEE--CCEEcC
Confidence 7999999999999999999999999999983 58999999999999999999999999 898874
No 70
>PLN03213 repressor of silencing 3; Provisional
Probab=99.40 E-value=8.7e-13 Score=127.28 Aligned_cols=77 Identities=23% Similarity=0.353 Sum_probs=70.3
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe----CCEEEEEEcCH--HHHHHHHHhcCCCeecCCCcEEEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK----SGFAFIYMDDE--RDAEDAIRGLDRTEFGRKGRRLRVE 123 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~----kg~aFV~F~~~--~~A~~A~~~lng~~ig~~gr~l~V~ 123 (425)
......+||||||++.||+++|..+|..||.|..|.|. +|||||+|.+. .++.+||..|||..| +|+.|+|+
T Consensus 6 s~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEW--KGR~LKVN 83 (759)
T PLN03213 6 SGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVW--KGGRLRLE 83 (759)
T ss_pred cCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCee--cCceeEEe
Confidence 34456899999999999999999999999999999995 89999999987 789999999999999 99999999
Q ss_pred Eeccc
Q 014384 124 WTKHE 128 (425)
Q Consensus 124 ~a~~~ 128 (425)
.|+..
T Consensus 84 KAKP~ 88 (759)
T PLN03213 84 KAKEH 88 (759)
T ss_pred eccHH
Confidence 88653
No 71
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.39 E-value=6.8e-13 Score=120.42 Aligned_cols=76 Identities=33% Similarity=0.605 Sum_probs=72.2
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEeccc
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHE 128 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~ 128 (425)
....++|+|+||.+.+|.++|++.|.+||+|.+|+|-++|+||.|.-.++|..|+..||+.+| +|+.|+|+++...
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkdy~fvh~d~~eda~~air~l~~~~~--~gk~m~vq~stsr 150 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKDYAFVHFDRAEDAVEAIRGLDNTEF--QGKRMHVQLSTSR 150 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecceeEEEEeeccchHHHHhccccccc--ccceeeeeeeccc
Confidence 456789999999999999999999999999999999999999999999999999999999999 9999999998653
No 72
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=1.4e-11 Score=120.44 Aligned_cols=163 Identities=17% Similarity=0.299 Sum_probs=115.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE----------eCC---EEEEEEcCHHHHHHHHHhcCCCeecCCCc
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM----------KSG---FAFIYMDDERDAEDAIRGLDRTEFGRKGR 118 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i----------~kg---~aFV~F~~~~~A~~A~~~lng~~ig~~gr 118 (425)
.-.++||||+||++++|++|...|..||.|..=+- ++| |+|+.|+++..+..-|.++.-. ..
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~-----~~ 331 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEG-----EG 331 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhc-----cc
Confidence 34589999999999999999999999998753222 367 9999999999998877654321 22
Q ss_pred EEEEEEeccccCCC-------CCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhc-cCCcEEEEEE-------
Q 014384 119 RLRVEWTKHERGIR-------RPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE-PYGKIISVRI------- 183 (425)
Q Consensus 119 ~l~V~~a~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~-~~G~v~~v~~------- 183 (425)
.+.+.++......+ .......-........+..||||++| |..++.++|..+|+ .||.|..+-|
T Consensus 332 ~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgv-prpl~A~eLA~imd~lyGgV~yaGIDtD~k~K 410 (520)
T KOG0129|consen 332 NYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGL-PRPLTAEELAMIMEDLFGGVLYVGIDTDPKLK 410 (520)
T ss_pred ceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCC-CCcchHHHHHHHHHHhcCceEEEEeccCcccC
Confidence 22233222222111 00111111224566788999999999 89999999999999 7999998887
Q ss_pred -eccEEEEEEcCHHHHHHHHHH----cCCCccCCeEEEEEEee
Q 014384 184 -RRNFAFVQYEVQEDATRALDA----TNMSKLTDRVISVEYAV 221 (425)
Q Consensus 184 -~~g~afV~f~~~~~A~~A~~~----l~g~~~~g~~i~v~~a~ 221 (425)
++|.|=|+|.+..+-.+||.+ |+...|. +.|.|.-..
T Consensus 411 YPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~-KRVEIkPYv 452 (520)
T KOG0129|consen 411 YPKGAGRVTFSNQQAYIKAISARFVQLDHTDID-KRVEIKPYV 452 (520)
T ss_pred CCCCcceeeecccHHHHHHHhhheEEEeccccc-eeeeeccee
Confidence 489999999999999999874 3444443 355554433
No 73
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.33 E-value=4.9e-12 Score=94.04 Aligned_cols=63 Identities=37% Similarity=0.662 Sum_probs=59.2
Q ss_pred EEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe-------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEE
Q 014384 153 LFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 216 (425)
Q Consensus 153 l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 216 (425)
|||+|| |..+++++|+++|.+||.|..+.+. +++|||+|.+.++|..|++.|+|..++|+.|+
T Consensus 1 l~v~nl-p~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNL-PPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESE-TTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCC-CCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999 8999999999999999999999885 46999999999999999999999999999885
No 74
>smart00362 RRM_2 RNA recognition motif.
Probab=99.33 E-value=8.6e-12 Score=92.39 Aligned_cols=65 Identities=42% Similarity=0.793 Sum_probs=60.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEE
Q 014384 56 PIFCGNFEYDARQSDLERLFRRYGKVDRVDMK------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 122 (425)
Q Consensus 56 ~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V 122 (425)
+|||+|||..++.++|.++|..||.|..+.+. +++|||+|.+.++|+.|+..|+|..| .|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~--~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKL--GGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEE--CCEEEee
Confidence 58999999999999999999999999998884 39999999999999999999999999 7988877
No 75
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.32 E-value=2.9e-11 Score=113.20 Aligned_cols=165 Identities=18% Similarity=0.257 Sum_probs=130.3
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEecc
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKH 127 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~ 127 (425)
.....-.|+|.+|-..+++.+|.+.++.||+|..|.+ .+..|.|+|++.+.|+.++..-....|.+.|+...+.++..
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NySts 106 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTS 106 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccceeeeeeccccchhhheehhccCcccccCchhhcccchh
Confidence 3456678999999999999999999999999988887 48899999999999999985433334433677777777644
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCC-CCCCHHHHHhhhccCCcEEEEEEecc---EEEEEEcCHHHHHHHHH
Q 014384 128 ERGIRRPGGGSSARRPSTNTRPSKTLFVINFDP-YHTRTRDLERHFEPYGKIISVRIRRN---FAFVQYEVQEDATRALD 203 (425)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p-~~~~~~~L~~~f~~~G~v~~v~~~~g---~afV~f~~~~~A~~A~~ 203 (425)
+... .+......+++.|++.=|+| +.+|.+.|..+....|+|..|.|.+. .|+|||++.+.|++|..
T Consensus 107 q~i~---------R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~ 177 (494)
T KOG1456|consen 107 QCIE---------RPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKA 177 (494)
T ss_pred hhhc---------cCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHh
Confidence 3311 11223455666666655533 57788999999999999999998743 89999999999999999
Q ss_pred HcCCCccC-C-eEEEEEEeeeC
Q 014384 204 ATNMSKLT-D-RVISVEYAVRD 223 (425)
Q Consensus 204 ~l~g~~~~-g-~~i~v~~a~~~ 223 (425)
.|||..|. | ++|+|+||++.
T Consensus 178 alNGADIYsGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 178 ALNGADIYSGCCTLKIEYAKPT 199 (494)
T ss_pred hcccccccccceeEEEEecCcc
Confidence 99998876 4 68999999875
No 76
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=2.4e-12 Score=112.30 Aligned_cols=79 Identities=24% Similarity=0.528 Sum_probs=73.3
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 121 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~ 121 (425)
.....++||||+|...||+.-|...|-.||.|.+|.|+ +|||||+|+..|+|.+||..||+.+| .|++|.
T Consensus 6 ~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL--~Grtir 83 (298)
T KOG0111|consen 6 MANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESEL--FGRTIR 83 (298)
T ss_pred ccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhh--cceeEE
Confidence 34567899999999999999999999999999999993 89999999999999999999999999 799999
Q ss_pred EEEeccccC
Q 014384 122 VEWTKHERG 130 (425)
Q Consensus 122 V~~a~~~~~ 130 (425)
|.+|++.+.
T Consensus 84 VN~AkP~ki 92 (298)
T KOG0111|consen 84 VNLAKPEKI 92 (298)
T ss_pred EeecCCccc
Confidence 999998763
No 77
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=8.7e-12 Score=106.13 Aligned_cols=74 Identities=27% Similarity=0.478 Sum_probs=68.9
Q ss_pred CCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe-----ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeC
Q 014384 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-----RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 223 (425)
Q Consensus 149 ~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 223 (425)
..++|||+|| |..+.+.+|+++|-+||.|..|.|. ..||||+|+++.+|..||..-+|..++|..|.|+|+...
T Consensus 5 ~~~~iyvGNL-P~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 5 NSRRIYVGNL-PGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred ccceEEecCC-CcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 4579999999 8889999999999999999999995 469999999999999999999999999999999998764
No 78
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=5.4e-12 Score=116.42 Aligned_cols=75 Identities=35% Similarity=0.516 Sum_probs=70.4
Q ss_pred CCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEe
Q 014384 147 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220 (425)
Q Consensus 147 ~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 220 (425)
....+.|+|.|| |+...+.||+.+|++||+|.+|+|. |||+||+|++.+||++|-++|||..|.|++|.|..|
T Consensus 93 ~~~pkRLhVSNI-PFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 93 KDTPKRLHVSNI-PFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCCceeEeecC-CccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 344589999999 9999999999999999999999995 899999999999999999999999999999999998
Q ss_pred ee
Q 014384 221 VR 222 (425)
Q Consensus 221 ~~ 222 (425)
..
T Consensus 172 Ta 173 (376)
T KOG0125|consen 172 TA 173 (376)
T ss_pred ch
Confidence 65
No 79
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.29 E-value=1.5e-11 Score=99.35 Aligned_cols=80 Identities=24% Similarity=0.458 Sum_probs=72.4
Q ss_pred CCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEE
Q 014384 144 STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVI 215 (425)
Q Consensus 144 ~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 215 (425)
+........|||.++ ...+++++|.+.|..||+|++|.+. +|||+|+|++.++|++|+..|||..|.|..|
T Consensus 66 PqrSVEGwIi~Vtgv-HeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v 144 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGV-HEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNV 144 (170)
T ss_pred CccceeeEEEEEecc-CcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCce
Confidence 344555789999999 6788899999999999999999984 8999999999999999999999999999999
Q ss_pred EEEEeeeCC
Q 014384 216 SVEYAVRDD 224 (425)
Q Consensus 216 ~v~~a~~~~ 224 (425)
.|.|+--+.
T Consensus 145 ~VDw~Fv~g 153 (170)
T KOG0130|consen 145 SVDWCFVKG 153 (170)
T ss_pred eEEEEEecC
Confidence 999998753
No 80
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.29 E-value=1.8e-11 Score=87.14 Aligned_cols=53 Identities=36% Similarity=0.746 Sum_probs=49.0
Q ss_pred HHHHHhhcCCeeEEEEe--C-CEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEe
Q 014384 71 LERLFRRYGKVDRVDMK--S-GFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 125 (425)
Q Consensus 71 L~~lF~~~G~V~~v~i~--k-g~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a 125 (425)
|.++|++||+|..|.+. + ++|||+|.+.++|..|+..|||..| .|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~--~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQF--NGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEE--TTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEEEEC
Confidence 68999999999999995 3 9999999999999999999999999 8999999986
No 81
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=4.4e-13 Score=113.75 Aligned_cols=79 Identities=24% Similarity=0.497 Sum_probs=72.2
Q ss_pred hhcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEE
Q 014384 49 AFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRL 120 (425)
Q Consensus 49 ~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l 120 (425)
..-....-|||||||+.+||.+|..+|++||+|.+|.| ++||||+.|++..+...|+..|||..| .|+.|
T Consensus 30 ~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki--~gRti 107 (219)
T KOG0126|consen 30 QEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKI--LGRTI 107 (219)
T ss_pred hhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCcee--cceeE
Confidence 45567789999999999999999999999999999999 489999999999999999999999999 79999
Q ss_pred EEEEecccc
Q 014384 121 RVEWTKHER 129 (425)
Q Consensus 121 ~V~~a~~~~ 129 (425)
+|.......
T Consensus 108 rVDHv~~Yk 116 (219)
T KOG0126|consen 108 RVDHVSNYK 116 (219)
T ss_pred Eeeeccccc
Confidence 999765544
No 82
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=2.6e-12 Score=132.29 Aligned_cols=155 Identities=24% Similarity=0.359 Sum_probs=133.4
Q ss_pred hhcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEE
Q 014384 49 AFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 121 (425)
Q Consensus 49 ~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~-------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~ 121 (425)
.....+.|||+|||+..+++.+|+..|..+|.|.+|.|. ..||||.|.+...+-.|...|.+..|+ .| .+.
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~-~g-~~r 444 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIG-NG-THR 444 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccc-cC-ccc
Confidence 456678999999999999999999999999999999994 459999999999999999999999885 22 233
Q ss_pred EEEeccccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEecc--EEEEEEcCHHHHH
Q 014384 122 VEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN--FAFVQYEVQEDAT 199 (425)
Q Consensus 122 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~~g--~afV~f~~~~~A~ 199 (425)
+.+... ...+.+.|||++| ..|+....|...|..||.|..|.+..| ||+|.|++...|+
T Consensus 445 ~glG~~------------------kst~ttr~~sggl-g~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq 505 (975)
T KOG0112|consen 445 IGLGQP------------------KSTPTTRLQSGGL-GPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQ 505 (975)
T ss_pred cccccc------------------ccccceeeccCCC-CCCChHHHHHHHhhccCcceeeecccCCcceeeecccCccch
Confidence 322211 3566789999999 788889999999999999999999876 9999999999999
Q ss_pred HHHHHcCCCccCC--eEEEEEEeeeCC
Q 014384 200 RALDATNMSKLTD--RVISVEYAVRDD 224 (425)
Q Consensus 200 ~A~~~l~g~~~~g--~~i~v~~a~~~~ 224 (425)
.|+..|-|..|+| +.|.|.|+....
T Consensus 506 ~a~~~~rgap~G~P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 506 AATHDMRGAPLGGPPRRLRVDLASPPG 532 (975)
T ss_pred hhHHHHhcCcCCCCCcccccccccCCC
Confidence 9999999999986 679999987753
No 83
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=1e-11 Score=99.58 Aligned_cols=76 Identities=28% Similarity=0.422 Sum_probs=69.5
Q ss_pred CCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEE--------eccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEE
Q 014384 147 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI--------RRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218 (425)
Q Consensus 147 ~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 218 (425)
...++||||+|| ...+++++|.++|.++|.|..|.| +-|||||+|...++|..|+..++|+.++.++|.+.
T Consensus 33 ~r~S~tvyVgNl-SfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 33 LRKSCTVYVGNL-SFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HhhcceEEEeee-eeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 345789999999 789999999999999999999988 35899999999999999999999999999999999
Q ss_pred EeeeC
Q 014384 219 YAVRD 223 (425)
Q Consensus 219 ~a~~~ 223 (425)
|...=
T Consensus 112 ~D~GF 116 (153)
T KOG0121|consen 112 WDAGF 116 (153)
T ss_pred ccccc
Confidence 87553
No 84
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=9.2e-12 Score=110.31 Aligned_cols=74 Identities=19% Similarity=0.484 Sum_probs=64.5
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEE
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 122 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V 122 (425)
+...++||||||++.++.+.|..+|++||+|++..+ +|||+||.|.|.++|..|++.-| -.| +|++..|
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piI--dGR~aNc 85 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PII--DGRKANC 85 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccc--ccccccc
Confidence 445689999999999999999999999999988766 49999999999999999995443 345 8999999
Q ss_pred EEecc
Q 014384 123 EWTKH 127 (425)
Q Consensus 123 ~~a~~ 127 (425)
.+|..
T Consensus 86 nlA~l 90 (247)
T KOG0149|consen 86 NLASL 90 (247)
T ss_pred chhhh
Confidence 98865
No 85
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.25 E-value=4.6e-11 Score=88.93 Aligned_cols=67 Identities=45% Similarity=0.827 Sum_probs=62.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEE
Q 014384 56 PIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 124 (425)
Q Consensus 56 ~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~-------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~ 124 (425)
+|+|+|||+.+++++|.++|..||.|..+.+. .++|||+|.+.++|..|+..+++..+ .|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~--~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKEL--GGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEeC
Confidence 58999999999999999999999999998883 58999999999999999999999998 899998864
No 86
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.22 E-value=4.7e-11 Score=109.40 Aligned_cols=71 Identities=23% Similarity=0.334 Sum_probs=66.3
Q ss_pred CcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe-----ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeee
Q 014384 150 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-----RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 222 (425)
Q Consensus 150 ~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 222 (425)
..+|||+|| +..+++++|+++|+.||.|..|.|+ +|||||+|.+.++|..||. |+|..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNL-s~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNV-SLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 579999999 7889999999999999999999995 6899999999999999995 999999999999999764
No 87
>smart00360 RRM RNA recognition motif.
Probab=99.22 E-value=4.2e-11 Score=88.27 Aligned_cols=63 Identities=38% Similarity=0.760 Sum_probs=58.1
Q ss_pred EcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEE
Q 014384 59 CGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 123 (425)
Q Consensus 59 V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~ 123 (425)
|+|||..+++++|.++|..||.|..|.+. +|+|||+|.+.++|..|+..|++..| .|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~--~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKEL--DGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCee--CCcEEEeC
Confidence 68999999999999999999999999883 57999999999999999999999999 79988873
No 88
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=2.5e-11 Score=120.69 Aligned_cols=171 Identities=19% Similarity=0.347 Sum_probs=134.8
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhc-----------C-CeeEEEEe--CCEEEEEEcCHHHHHHHHHhcCCCeecC
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRY-----------G-KVDRVDMK--SGFAFIYMDDERDAEDAIRGLDRTEFGR 115 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~-----------G-~V~~v~i~--kg~aFV~F~~~~~A~~A~~~lng~~ig~ 115 (425)
.......++|++|++.++++.+..+|..- | .|..|.|. +.||||+|.+.++|..|+ .+++..+
T Consensus 171 ~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~nfa~ie~~s~~~at~~~-~~~~~~f-- 247 (500)
T KOG0120|consen 171 ATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKNFAFIEFRSISEATEAM-ALDGIIF-- 247 (500)
T ss_pred hhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccccceeEEecCCCchhhhh-cccchhh--
Confidence 33456789999999999999999999864 3 36777774 899999999999999999 8999888
Q ss_pred CCcEEEEEEeccccCCCCCCC-------CCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe----
Q 014384 116 KGRRLRVEWTKHERGIRRPGG-------GSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR---- 184 (425)
Q Consensus 116 ~gr~l~V~~a~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~---- 184 (425)
.|..+++.-.........-.. -.............+.+||++| |...++.++.+++..||.+....+.
T Consensus 248 ~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~l-p~~l~~~q~~Ell~~fg~lk~f~lv~d~~ 326 (500)
T KOG0120|consen 248 EGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGL-PLYLTEDQVKELLDSFGPLKAFRLVKDSA 326 (500)
T ss_pred CCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccC-cCccCHHHHHHHHHhcccchhheeecccc
Confidence 899888864333221111000 0111222333445678999999 8999999999999999998877763
Q ss_pred ----ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeCC
Q 014384 185 ----RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDD 224 (425)
Q Consensus 185 ----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~ 224 (425)
+||||.+|.+...+..|+..|||+.+++..|.|..|....
T Consensus 327 ~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~ 370 (500)
T KOG0120|consen 327 TGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGA 370 (500)
T ss_pred cccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccc
Confidence 7899999999999999999999999999999999987753
No 89
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.18 E-value=2e-10 Score=88.78 Aligned_cols=76 Identities=29% Similarity=0.472 Sum_probs=69.9
Q ss_pred CCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe-----ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEee
Q 014384 147 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-----RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221 (425)
Q Consensus 147 ~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 221 (425)
..-+..|||.|| |+.+|.+++.++|.+||.|.+|.|- +|.|||.|++..+|.+|++.|.|..+.++.+.|-+-.
T Consensus 15 pevnriLyirNL-p~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 15 PEVNRILYIRNL-PFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hhhheeEEEecC-CccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 344678999999 9999999999999999999999994 7999999999999999999999999999999998865
Q ss_pred eC
Q 014384 222 RD 223 (425)
Q Consensus 222 ~~ 223 (425)
..
T Consensus 94 ~~ 95 (124)
T KOG0114|consen 94 PE 95 (124)
T ss_pred HH
Confidence 54
No 90
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.16 E-value=1.6e-10 Score=86.10 Aligned_cols=63 Identities=35% Similarity=0.643 Sum_probs=56.9
Q ss_pred EEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe-------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEE
Q 014384 153 LFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 216 (425)
Q Consensus 153 l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 216 (425)
|||+|| |..+++++|.++|..||.|..+.+. +++|||+|.++++|..|++.+++..|+|+.|.
T Consensus 1 v~i~nl-p~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNL-PPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESS-TTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCC-CCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999 7889999999999999999999885 47999999999999999999999999999874
No 91
>PLN03213 repressor of silencing 3; Provisional
Probab=99.15 E-value=1.1e-10 Score=112.83 Aligned_cols=75 Identities=20% Similarity=0.276 Sum_probs=69.4
Q ss_pred CCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe----ccEEEEEEcCH--HHHHHHHHHcCCCccCCeEEEEEEee
Q 014384 148 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR----RNFAFVQYEVQ--EDATRALDATNMSKLTDRVISVEYAV 221 (425)
Q Consensus 148 ~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~----~g~afV~f~~~--~~A~~A~~~l~g~~~~g~~i~v~~a~ 221 (425)
.....|||+|| .+.+++++|..+|..||.|..|.|+ +|||||+|.+. .++.+||..|||..+.|+.|+|+.|+
T Consensus 8 ~~gMRIYVGNL-SydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 8 GGGVRLHVGGL-GESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred CcceEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 44579999999 8999999999999999999999997 68999999987 78999999999999999999999987
Q ss_pred eC
Q 014384 222 RD 223 (425)
Q Consensus 222 ~~ 223 (425)
+.
T Consensus 87 P~ 88 (759)
T PLN03213 87 EH 88 (759)
T ss_pred HH
Confidence 64
No 92
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=1.3e-10 Score=103.43 Aligned_cols=75 Identities=32% Similarity=0.524 Sum_probs=70.1
Q ss_pred CCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEE
Q 014384 148 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 219 (425)
Q Consensus 148 ~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 219 (425)
...++|-|.|| +..+++.+|+++|..||.|..|.|. +|||||.|.+.++|++||..|||.-++.-.|.|+|
T Consensus 187 ~D~~tvRvtNL-sed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 187 DDEATVRVTNL-SEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CccceeEEecC-ccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 35678999999 8999999999999999999999984 78999999999999999999999999999999999
Q ss_pred eeeC
Q 014384 220 AVRD 223 (425)
Q Consensus 220 a~~~ 223 (425)
+++.
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9874
No 93
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.12 E-value=3.1e-10 Score=80.70 Aligned_cols=53 Identities=32% Similarity=0.630 Sum_probs=49.3
Q ss_pred HHhhhccCCcEEEEEEec---cEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEe
Q 014384 168 LERHFEPYGKIISVRIRR---NFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220 (425)
Q Consensus 168 L~~~f~~~G~v~~v~~~~---g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 220 (425)
|.++|++||+|..+.+.. ++|||+|.+.++|..|+..|||..++|+.|.|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 678999999999999974 89999999999999999999999999999999986
No 94
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.12 E-value=1.6e-10 Score=117.40 Aligned_cols=77 Identities=23% Similarity=0.534 Sum_probs=71.4
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEeccc
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHE 128 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~ 128 (425)
....+|||||+|+.++++.+|..+|+.||.|..|+| .+++|||.+..-.+|.+||.+|+...| .++.|+|.|+..+
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv--~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKV--ADKTIKIAWAVGK 495 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccc--cceeeEEeeeccC
Confidence 344699999999999999999999999999999999 599999999999999999999999988 8999999999765
Q ss_pred c
Q 014384 129 R 129 (425)
Q Consensus 129 ~ 129 (425)
-
T Consensus 496 G 496 (894)
T KOG0132|consen 496 G 496 (894)
T ss_pred C
Confidence 3
No 95
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.10 E-value=1.7e-10 Score=114.23 Aligned_cols=73 Identities=36% Similarity=0.679 Sum_probs=69.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEec
Q 014384 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 126 (425)
Q Consensus 55 ~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~ 126 (425)
..|||||||+++++++|.++|+..|.|..+++ .+|||||+|.+.++|..|+..|||.++ .|++|+|.|+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~--~gr~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEF--NGRKLRVNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCccc--CCceEEeeccc
Confidence 89999999999999999999999999999999 389999999999999999999999999 79999999987
Q ss_pred ccc
Q 014384 127 HER 129 (425)
Q Consensus 127 ~~~ 129 (425)
...
T Consensus 97 ~~~ 99 (435)
T KOG0108|consen 97 NRK 99 (435)
T ss_pred ccc
Confidence 654
No 96
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1e-10 Score=108.87 Aligned_cols=76 Identities=22% Similarity=0.433 Sum_probs=70.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEE
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 123 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~ 123 (425)
.+..+|||..|++-+|.++|+-+|+.||+|..|.+ +..||||+|++.+++++|...|+++.| +++.|+|.
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLI--DDrRIHVD 314 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLI--DDRRIHVD 314 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceee--ccceEEee
Confidence 34589999999999999999999999999999988 367999999999999999999999999 99999999
Q ss_pred Eecccc
Q 014384 124 WTKHER 129 (425)
Q Consensus 124 ~a~~~~ 129 (425)
|+....
T Consensus 315 FSQSVs 320 (479)
T KOG0415|consen 315 FSQSVS 320 (479)
T ss_pred hhhhhh
Confidence 987544
No 97
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.09 E-value=4.7e-10 Score=101.25 Aligned_cols=72 Identities=18% Similarity=0.171 Sum_probs=65.7
Q ss_pred CCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe-----ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeee
Q 014384 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-----RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 222 (425)
Q Consensus 149 ~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 222 (425)
...+|||+|| +..+++++|+++|+.||.|..|.|. .+||||+|.++++|..|+ .|+|..|.|..|.|.....
T Consensus 4 ~g~TV~V~NL-S~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNL-SPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecC-CCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCcc
Confidence 4579999999 7889999999999999999999997 469999999999999999 5999999999999987654
No 98
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=7.6e-11 Score=103.06 Aligned_cols=77 Identities=34% Similarity=0.541 Sum_probs=71.9
Q ss_pred CCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEE
Q 014384 147 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218 (425)
Q Consensus 147 ~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 218 (425)
.....+|||++| ...+++..|...|-.||.|+.|.++ +|||||+|...+||.+|+..||+.++.|+.|.|.
T Consensus 7 a~~KrtlYVGGl-adeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN 85 (298)
T KOG0111|consen 7 ANQKRTLYVGGL-ADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVN 85 (298)
T ss_pred cccceeEEeccc-hHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEe
Confidence 445689999999 7899999999999999999999997 7899999999999999999999999999999999
Q ss_pred EeeeCC
Q 014384 219 YAVRDD 224 (425)
Q Consensus 219 ~a~~~~ 224 (425)
+|++.+
T Consensus 86 ~AkP~k 91 (298)
T KOG0111|consen 86 LAKPEK 91 (298)
T ss_pred ecCCcc
Confidence 998864
No 99
>smart00362 RRM_2 RNA recognition motif.
Probab=99.08 E-value=5.3e-10 Score=82.59 Aligned_cols=65 Identities=45% Similarity=0.693 Sum_probs=60.3
Q ss_pred EEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEE
Q 014384 152 TLFVINFDPYHTRTRDLERHFEPYGKIISVRIR------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217 (425)
Q Consensus 152 ~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 217 (425)
+|+|.|| |..+++++|+++|.+||.|..+.+. .++|||+|.+.++|..|+..+++..+.|..|.|
T Consensus 1 ~v~i~~l-~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNL-PPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCC-CCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 5899999 7888899999999999999999885 389999999999999999999999999999886
No 100
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.03 E-value=5.4e-11 Score=104.02 Aligned_cols=140 Identities=21% Similarity=0.261 Sum_probs=114.2
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 123 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~ 123 (425)
.++..+||||+||...|+++-|.+||-+-|+|..|.|. ..||||+|+++-.+..|+..|||..+ .+..|.|.
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l--~~~e~q~~ 82 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDL--EEDEEQRT 82 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchh--ccchhhcc
Confidence 34567899999999999999999999999999999994 33999999999999999999999999 79999998
Q ss_pred EeccccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe-------ccEEEEEEcCHH
Q 014384 124 WTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQE 196 (425)
Q Consensus 124 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~-------~g~afV~f~~~~ 196 (425)
+-...... -| -..++++.+...|...|.+..+.+. .+++|+.+.-..
T Consensus 83 ~r~G~sha-------------------------pl-d~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~ 136 (267)
T KOG4454|consen 83 LRCGNSHA-------------------------PL-DERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLC 136 (267)
T ss_pred cccCCCcc-------------------------hh-hhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhh
Confidence 76543210 04 3456688888889999998888885 458999998888
Q ss_pred HHHHHHHHcCCCccCCeEEEE
Q 014384 197 DATRALDATNMSKLTDRVISV 217 (425)
Q Consensus 197 ~A~~A~~~l~g~~~~g~~i~v 217 (425)
..-.|+...++..+.-+++.+
T Consensus 137 ~~P~~~~~y~~l~~~~~~~~~ 157 (267)
T KOG4454|consen 137 AVPFALDLYQGLELFQKKVTI 157 (267)
T ss_pred cCcHHhhhhcccCcCCCCccc
Confidence 888888877776655554444
No 101
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.02 E-value=5.2e-10 Score=95.40 Aligned_cols=74 Identities=28% Similarity=0.401 Sum_probs=68.5
Q ss_pred CCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEE
Q 014384 147 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218 (425)
Q Consensus 147 ~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 218 (425)
.....+|||+|| +..++++.|.++|-+.|+|+.+.|+ +|||||+|.++++|+-|++.||...+.|++|.|.
T Consensus 6 rnqd~tiyvgnl-d~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 6 RNQDATLYVGNL-DEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred cCCCceEEEecC-CHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 344679999999 6788899999999999999999997 6899999999999999999999999999999999
Q ss_pred Eee
Q 014384 219 YAV 221 (425)
Q Consensus 219 ~a~ 221 (425)
.+.
T Consensus 85 kas 87 (203)
T KOG0131|consen 85 KAS 87 (203)
T ss_pred ecc
Confidence 987
No 102
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.98 E-value=1.3e-10 Score=98.89 Aligned_cols=73 Identities=29% Similarity=0.489 Sum_probs=68.0
Q ss_pred CCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEe
Q 014384 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220 (425)
Q Consensus 149 ~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 220 (425)
.+.-|||+|| |+..|+.+|.-+|++||+|++|.+. +||||+.|+++....-|+..|||..|.|+.|.|.+.
T Consensus 34 dsA~Iyiggl-~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 34 DSAYIYIGGL-PYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred cceEEEECCC-cccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 3568999999 8999999999999999999999996 689999999999999999999999999999999985
Q ss_pred ee
Q 014384 221 VR 222 (425)
Q Consensus 221 ~~ 222 (425)
..
T Consensus 113 ~~ 114 (219)
T KOG0126|consen 113 SN 114 (219)
T ss_pred cc
Confidence 43
No 103
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.98 E-value=2.8e-09 Score=79.14 Aligned_cols=67 Identities=46% Similarity=0.711 Sum_probs=61.8
Q ss_pred EEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe-------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEE
Q 014384 152 TLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 219 (425)
Q Consensus 152 ~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 219 (425)
+|+|.|| |..+++++|.++|..||.|..+.+. .++|||+|.+.++|..|++.+++..+.|..|.|.+
T Consensus 1 ~i~i~~l-~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNL-PPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCC-CCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999 7889999999999999999999885 47999999999999999999999999999998864
No 104
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.96 E-value=1.9e-09 Score=100.55 Aligned_cols=77 Identities=19% Similarity=0.463 Sum_probs=67.8
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcCHHHHHHHHHhcCC-CeecCCCcEEEEEEec
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGLDR-TEFGRKGRRLRVEWTK 126 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--kg~aFV~F~~~~~A~~A~~~lng-~~ig~~gr~l~V~~a~ 126 (425)
+....++|||++|...+++.+|.++|.+||+|..|.+. +++|||+|.+.++|+.|...+-. ..| +|..|.|.|..
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI--~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVI--NGFRLKIKWGR 301 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeee--cceEEEEEeCC
Confidence 44556899999999999999999999999999999884 88999999999999998876544 455 99999999998
Q ss_pred cc
Q 014384 127 HE 128 (425)
Q Consensus 127 ~~ 128 (425)
..
T Consensus 302 ~~ 303 (377)
T KOG0153|consen 302 PK 303 (377)
T ss_pred Cc
Confidence 83
No 105
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.95 E-value=5.5e-10 Score=110.26 Aligned_cols=167 Identities=19% Similarity=0.268 Sum_probs=109.1
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE---eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEec
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM---KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 126 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i---~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~ 126 (425)
......+|+|.|||..|++++|..+|+.||+|.+|.+ ..|.+||+|.|..+|+.|+++||+..| .|+.|+.....
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~--~~~~~k~~~~~ 148 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREI--AGKRIKRPGGA 148 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHh--hhhhhcCCCcc
Confidence 4566789999999999999999999999999999888 489999999999999999999999999 78888832111
Q ss_pred cccCCCCCCC-------CCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEE--eccEEEEEEcCHHH
Q 014384 127 HERGIRRPGG-------GSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI--RRNFAFVQYEVQED 197 (425)
Q Consensus 127 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~--~~g~afV~f~~~~~ 197 (425)
... .....+ ...........-+..++|+- |.| ..+..-++.+|.-+|.+..-.. ....-|++|.+..+
T Consensus 149 ~~~-~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P-~~s~~~~~~~~~~~~~~~~~~~~~~~hq~~~~~~~~~s 225 (549)
T KOG4660|consen 149 RRA-MGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSP-TRSSILLEHISSVDGSSPGRETPLLNHQRFVEFADNRS 225 (549)
T ss_pred ccc-chhcccchhhhhccchhhcCCCCCCcCCcceee-ecc-chhhhhhhcchhccCccccccccchhhhhhhhhccccc
Confidence 100 000000 00000001111112233333 744 4445566677777887666222 24577889998888
Q ss_pred HHHHHHHcCCCccCCeEEEEEEeee
Q 014384 198 ATRALDATNMSKLTDRVISVEYAVR 222 (425)
Q Consensus 198 A~~A~~~l~g~~~~g~~i~v~~a~~ 222 (425)
+..++..+ |..+.+....+.+...
T Consensus 226 ~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 226 YAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred hhhcccCC-ceecCCCCceEEecCC
Confidence 86666533 5666666655555433
No 106
>smart00361 RRM_1 RNA recognition motif.
Probab=98.94 E-value=3e-09 Score=79.31 Aligned_cols=53 Identities=32% Similarity=0.632 Sum_probs=47.5
Q ss_pred HHHHHHHHh----hcCCeeEEE-E----------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEE
Q 014384 68 QSDLERLFR----RYGKVDRVD-M----------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 122 (425)
Q Consensus 68 ~~~L~~lF~----~~G~V~~v~-i----------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V 122 (425)
+++|.++|. +||+|..|. | ++|||||+|.+.++|.+|+..|||..| .|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~--~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYF--DGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEe
Confidence 578899998 999999884 2 279999999999999999999999999 8999876
No 107
>smart00360 RRM RNA recognition motif.
Probab=98.93 E-value=3e-09 Score=78.17 Aligned_cols=63 Identities=41% Similarity=0.650 Sum_probs=57.0
Q ss_pred EEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEE
Q 014384 155 VINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218 (425)
Q Consensus 155 V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 218 (425)
|+|| |..+++++|+++|.+||.|..+.+. +++|||+|.+.++|..|+..|++..+.|..|.|.
T Consensus 1 i~~l-~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNL-PPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCC-CcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 4678 7888999999999999999999885 3699999999999999999999999999998873
No 108
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.93 E-value=1.7e-09 Score=96.11 Aligned_cols=73 Identities=25% Similarity=0.416 Sum_probs=64.3
Q ss_pred CCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEE
Q 014384 148 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 219 (425)
Q Consensus 148 ~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 219 (425)
..-++|||+|| ++.+..+.|++.|++||+|++..+. +||+||+|.+.+.|..|++.. +-.|+|++..|.+
T Consensus 10 T~~TKifVggL-~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnl 87 (247)
T KOG0149|consen 10 TTFTKIFVGGL-AWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNL 87 (247)
T ss_pred ceEEEEEEcCc-ccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccch
Confidence 34578999999 8899999999999999999988884 799999999999999999854 4568999998888
Q ss_pred eee
Q 014384 220 AVR 222 (425)
Q Consensus 220 a~~ 222 (425)
|.-
T Consensus 88 A~l 90 (247)
T KOG0149|consen 88 ASL 90 (247)
T ss_pred hhh
Confidence 765
No 109
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.91 E-value=2.3e-10 Score=108.89 Aligned_cols=148 Identities=24% Similarity=0.389 Sum_probs=123.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhh--cCCeeEEEEeCCEEEEEEcCHHHHHHHHHhcCCC-eecCCCcEEEEEEeccccCC
Q 014384 55 RPIFCGNFEYDARQSDLERLFRR--YGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRT-EFGRKGRRLRVEWTKHERGI 131 (425)
Q Consensus 55 ~~l~V~nL~~~~t~~~L~~lF~~--~G~V~~v~i~kg~aFV~F~~~~~A~~A~~~lng~-~ig~~gr~l~V~~a~~~~~~ 131 (425)
..||++||.+.+|..+|+.+|+. .|--..+.|..|||||.+.+...|.+|++.|+|+ ++ .|+.+.|+.+..+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~el--qGkr~e~~~sv~kk-- 77 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVEL--QGKRQEVEHSVPKK-- 77 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhh--cCceeeccchhhHH--
Confidence 57999999999999999999985 4445667788999999999999999999999996 55 89999999877654
Q ss_pred CCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEec-----cEEEEEEcCHHHHHHHHHHcC
Q 014384 132 RRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRR-----NFAFVQYEVQEDATRALDATN 206 (425)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~~-----g~afV~f~~~~~A~~A~~~l~ 206 (425)
.....+-|.|+ |....|+.|..++.+||.|..|.... ...-|+|...+.+..|+..|+
T Consensus 78 ----------------qrsrk~Qirni-ppql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~ 140 (584)
T KOG2193|consen 78 ----------------QRSRKIQIRNI-PPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLN 140 (584)
T ss_pred ----------------HHhhhhhHhcC-CHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 12345778899 56666999999999999999887642 234477888899999999999
Q ss_pred CCccCCeEEEEEEeeeC
Q 014384 207 MSKLTDRVISVEYAVRD 223 (425)
Q Consensus 207 g~~~~g~~i~v~~a~~~ 223 (425)
|..+.+..+.|.|-..+
T Consensus 141 g~Q~en~~~k~~YiPde 157 (584)
T KOG2193|consen 141 GPQLENQHLKVGYIPDE 157 (584)
T ss_pred chHhhhhhhhcccCchh
Confidence 99999999999986554
No 110
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.89 E-value=4e-09 Score=99.32 Aligned_cols=72 Identities=38% Similarity=0.637 Sum_probs=67.7
Q ss_pred CcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEee
Q 014384 150 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221 (425)
Q Consensus 150 ~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 221 (425)
..+|||+|| +..+++++|.++|.+||.|..+.+. +|||||+|.+.++|..|++.|++..|.|+.|.|.++.
T Consensus 115 ~~~l~v~nL-~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNL-PYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCC-CCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 699999999 8999999999999999999888874 6899999999999999999999999999999999976
Q ss_pred e
Q 014384 222 R 222 (425)
Q Consensus 222 ~ 222 (425)
.
T Consensus 194 ~ 194 (306)
T COG0724 194 P 194 (306)
T ss_pred c
Confidence 4
No 111
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=3.9e-09 Score=98.53 Aligned_cols=79 Identities=30% Similarity=0.536 Sum_probs=70.8
Q ss_pred CCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEec--------cEEEEEEcCHHHHHHHHHHcCCCccCCeEE
Q 014384 144 STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRR--------NFAFVQYEVQEDATRALDATNMSKLTDRVI 215 (425)
Q Consensus 144 ~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~~--------g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 215 (425)
....+|.+.|||+.|+| .|+.++|.-+|+.||+|..|.+.+ .||||+|++.+++.+|.-+|++..|+++.|
T Consensus 233 Ad~~PPeNVLFVCKLNP-VTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRI 311 (479)
T KOG0415|consen 233 ADVKPPENVLFVCKLNP-VTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRI 311 (479)
T ss_pred cccCCCcceEEEEecCC-cccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceE
Confidence 45568889999999965 566999999999999999999973 499999999999999999999999999999
Q ss_pred EEEEeeeC
Q 014384 216 SVEYAVRD 223 (425)
Q Consensus 216 ~v~~a~~~ 223 (425)
+|.|+..-
T Consensus 312 HVDFSQSV 319 (479)
T KOG0415|consen 312 HVDFSQSV 319 (479)
T ss_pred Eeehhhhh
Confidence 99997653
No 112
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.84 E-value=5.8e-09 Score=98.31 Aligned_cols=165 Identities=19% Similarity=0.186 Sum_probs=110.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhh-----cCCeeEEEE------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEE
Q 014384 54 MRPIFCGNFEYDARQSDLERLFRR-----YGKVDRVDM------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 122 (425)
Q Consensus 54 ~~~l~V~nL~~~~t~~~L~~lF~~-----~G~V~~v~i------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V 122 (425)
.-.|-+.+||+++|+.|+.+||.. -|++.-+.+ ..|-|||.|..+++|..||. -|...| ..+-|.|
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~-khrq~i--GqRYIEl 237 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALR-KHRQNI--GQRYIEL 237 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHH-HHHHHH--hHHHHHH
Confidence 456778899999999999999973 233322333 27999999999999999994 333344 1333333
Q ss_pred EEeccc--------------cCC-CCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcE-EE--EEE-
Q 014384 123 EWTKHE--------------RGI-RRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKI-IS--VRI- 183 (425)
Q Consensus 123 ~~a~~~--------------~~~-~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v-~~--v~~- 183 (425)
.-+... ... ..+.................||-+.+| |+.++.++|.++|..|..- .. |.+
T Consensus 238 FRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGL-Py~AtvEdIL~FlgdFa~~i~f~gVHmv 316 (508)
T KOG1365|consen 238 FRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGL-PYEATVEDILDFLGDFATDIRFQGVHMV 316 (508)
T ss_pred HHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCC-ChhhhHHHHHHHHHHHhhhcccceeEEE
Confidence 211100 000 000000001111222334679999999 9999999999999988743 22 344
Q ss_pred ------eccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeee
Q 014384 184 ------RRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 222 (425)
Q Consensus 184 ------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 222 (425)
+.|-|||+|.+.++|..|....+.+..+.+-|.|--+..
T Consensus 317 ~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ 361 (508)
T KOG1365|consen 317 LNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSV 361 (508)
T ss_pred EcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccH
Confidence 367999999999999999999998888888888866543
No 113
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.83 E-value=1e-08 Score=90.89 Aligned_cols=78 Identities=29% Similarity=0.494 Sum_probs=70.5
Q ss_pred CCCCcEEEEEcCCCCCCCHHHHHh----hhccCCcEEEEEEe-----ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEE
Q 014384 147 TRPSKTLFVINFDPYHTRTRDLER----HFEPYGKIISVRIR-----RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217 (425)
Q Consensus 147 ~~~~~~l~V~nl~p~~~~~~~L~~----~f~~~G~v~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 217 (425)
..++.||||.|| ...+..++|+. +|++||.|..|... +|.|||.|.+.+.|..|+..|+|..|.|+.+.|
T Consensus 6 ~~pn~TlYInnL-nekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 6 VNPNGTLYINNL-NEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred cCCCceEeehhc-cccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 455669999999 78888888877 99999999999884 799999999999999999999999999999999
Q ss_pred EEeeeCCC
Q 014384 218 EYAVRDDD 225 (425)
Q Consensus 218 ~~a~~~~~ 225 (425)
.||+.+.+
T Consensus 85 qyA~s~sd 92 (221)
T KOG4206|consen 85 QYAKSDSD 92 (221)
T ss_pred ecccCccc
Confidence 99998743
No 114
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.76 E-value=7.4e-09 Score=92.63 Aligned_cols=74 Identities=31% Similarity=0.553 Sum_probs=69.5
Q ss_pred cEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEeccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeCCC
Q 014384 151 KTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDD 225 (425)
Q Consensus 151 ~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~~ 225 (425)
..|||++| ++.+.+.+|+.+|..||.|..+.+..+|+||+|.+..+|..|+..||+..|.|..+.|+|+.....
T Consensus 2 ~rv~vg~~-~~~~~~~d~E~~f~~yg~~~d~~mk~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~ 75 (216)
T KOG0106|consen 2 PRVYIGRL-PYRARERDVERFFKGYGKIPDADMKNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRR 75 (216)
T ss_pred Cceeeccc-CCccchhHHHHHHhhccccccceeecccceeccCchhhhhcccchhcCceecceeeeeeccccccc
Confidence 46899999 899999999999999999999999999999999999999999999999999999999999987543
No 115
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.75 E-value=2.4e-08 Score=94.98 Aligned_cols=74 Identities=24% Similarity=0.510 Sum_probs=65.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEE
Q 014384 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 124 (425)
Q Consensus 53 ~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~ 124 (425)
...+|||++|+.++++++|++.|.+||.|..+.+ .+||+||.|.+.+.+.+++ .+.-..| +++.+.|..
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~--~gk~vevkr 172 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKFHDF--NGKKVEVKR 172 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec-ccceeee--cCceeeEee
Confidence 4679999999999999999999999999888777 3899999999999999998 5666677 899999998
Q ss_pred ecccc
Q 014384 125 TKHER 129 (425)
Q Consensus 125 a~~~~ 129 (425)
|.+..
T Consensus 173 A~pk~ 177 (311)
T KOG4205|consen 173 AIPKE 177 (311)
T ss_pred ccchh
Confidence 87765
No 116
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.75 E-value=8.6e-09 Score=92.86 Aligned_cols=78 Identities=18% Similarity=0.358 Sum_probs=69.8
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 121 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~ 121 (425)
+..+.+.|||-.||...++.+|.++|-.||.|...++ +|+|+||.|.++.+|..||.+|||..|| =+.|+
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIG--MKRLK 358 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIG--MKRLK 358 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhh--hhhhh
Confidence 4556799999999999999999999999999988776 5999999999999999999999999995 67889
Q ss_pred EEEecccc
Q 014384 122 VEWTKHER 129 (425)
Q Consensus 122 V~~a~~~~ 129 (425)
|.+..++.
T Consensus 359 VQLKRPkd 366 (371)
T KOG0146|consen 359 VQLKRPKD 366 (371)
T ss_pred hhhcCccc
Confidence 98776543
No 117
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.73 E-value=1.9e-08 Score=99.13 Aligned_cols=76 Identities=33% Similarity=0.582 Sum_probs=69.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEE
Q 014384 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 124 (425)
Q Consensus 53 ~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~ 124 (425)
..+.|||.+|...+...+|+.||++||+|+-.++ .++|+||++.+.++|.+||..|+.+.| .|+.|.|+-
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTEL--HGrmISVEk 481 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTEL--HGRMISVEK 481 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhh--cceeeeeee
Confidence 3478999999999999999999999999987776 278999999999999999999999999 899999999
Q ss_pred eccccC
Q 014384 125 TKHERG 130 (425)
Q Consensus 125 a~~~~~ 130 (425)
++..+.
T Consensus 482 aKNEp~ 487 (940)
T KOG4661|consen 482 AKNEPG 487 (940)
T ss_pred cccCcc
Confidence 887663
No 118
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.73 E-value=2.3e-08 Score=99.31 Aligned_cols=74 Identities=28% Similarity=0.527 Sum_probs=70.1
Q ss_pred cEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeee
Q 014384 151 KTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 222 (425)
Q Consensus 151 ~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 222 (425)
..|||+|+ |+.+++++|..+|+..|.|..+++. +||||++|.+.++|..|+..|||.++.|+.|.|.|+..
T Consensus 19 ~~v~vgni-p~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNI-PYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCC-CCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 89999999 8999999999999999999999994 78999999999999999999999999999999999887
Q ss_pred CCC
Q 014384 223 DDD 225 (425)
Q Consensus 223 ~~~ 225 (425)
...
T Consensus 98 ~~~ 100 (435)
T KOG0108|consen 98 RKN 100 (435)
T ss_pred cch
Confidence 543
No 119
>smart00361 RRM_1 RNA recognition motif.
Probab=98.72 E-value=3.5e-08 Score=73.48 Aligned_cols=53 Identities=28% Similarity=0.508 Sum_probs=47.1
Q ss_pred HHHHHhhhc----cCCcEEEEE---Ee--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEE
Q 014384 165 TRDLERHFE----PYGKIISVR---IR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217 (425)
Q Consensus 165 ~~~L~~~f~----~~G~v~~v~---~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 217 (425)
+++|+++|. +||.|..|. +. +|||||+|.+.++|.+|+..|||..++|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999998884 21 679999999999999999999999999999976
No 120
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.72 E-value=3.3e-08 Score=86.32 Aligned_cols=78 Identities=17% Similarity=0.304 Sum_probs=69.5
Q ss_pred hhcCCCceEEEcCCCCCCCHHHHHHHHhhc-CCeeEEEE--------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcE
Q 014384 49 AFEAMMRPIFCGNFEYDARQSDLERLFRRY-GKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRR 119 (425)
Q Consensus 49 ~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~-G~V~~v~i--------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~ 119 (425)
........++|..||..+-+.+|..+|.+| |.|..+.| ++|||||+|++++.|+-|.+.||+..| .++.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl--~e~l 121 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLL--MEHL 121 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhh--hhhe
Confidence 345566889999999999999999999998 78888888 389999999999999999999999999 7999
Q ss_pred EEEEEeccc
Q 014384 120 LRVEWTKHE 128 (425)
Q Consensus 120 l~V~~a~~~ 128 (425)
|.|.+-.+.
T Consensus 122 L~c~vmppe 130 (214)
T KOG4208|consen 122 LECHVMPPE 130 (214)
T ss_pred eeeEEeCch
Confidence 999886554
No 121
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.70 E-value=3.1e-08 Score=101.14 Aligned_cols=73 Identities=33% Similarity=0.543 Sum_probs=68.9
Q ss_pred CcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeC
Q 014384 150 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 223 (425)
Q Consensus 150 ~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 223 (425)
++||||++| +..+++++|.++|+.||.|..|.+. ++||||.+..-.+|.+|+.+|.+..+.++.|+|.||...
T Consensus 421 SrTLwvG~i-~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 421 SRTLWVGGI-PKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeeccc-cchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 379999999 7899999999999999999999885 899999999999999999999999999999999998775
No 122
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.68 E-value=1.8e-08 Score=95.50 Aligned_cols=161 Identities=17% Similarity=0.258 Sum_probs=124.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcCHHHHHHHHHhcCC-CeecCCCcEEEE
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDR-TEFGRKGRRLRV 122 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--------~kg~aFV~F~~~~~A~~A~~~lng-~~ig~~gr~l~V 122 (425)
....++||+++...+.+.++..+|..+|.+....+ ++++++|.|...+.+..|+ ++.+ ..+ .+..+..
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l-~~s~~~~~--~~~~~~~ 162 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAAL-EESGSKVL--DGNKGEK 162 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHH-Hhhhcccc--ccccccC
Confidence 35789999999999999999999999997766555 4899999999999999999 4555 344 4555555
Q ss_pred EEeccccCCCCCCCCCCCCCCCCCCCCCcEEE-EEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEc
Q 014384 123 EWTKHERGIRRPGGGSSARRPSTNTRPSKTLF-VINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYE 193 (425)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~ 193 (425)
.+......... .........+..++| |.+| ++.++.++|+.+|..+|.|..+.++ ++||||.|.
T Consensus 163 dl~~~~~~~~~------n~~~~~~~~~s~~~~~~~~~-~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~ 235 (285)
T KOG4210|consen 163 DLNTRRGLRPK------NKLSRLSSGPSDTIFFVGEL-DFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFS 235 (285)
T ss_pred ccccccccccc------chhcccccCccccceeeccc-ccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhh
Confidence 54443321000 011122233444555 9999 7999999999999999999999996 689999999
Q ss_pred CHHHHHHHHHHcCCCccCCeEEEEEEeeeC
Q 014384 194 VQEDATRALDATNMSKLTDRVISVEYAVRD 223 (425)
Q Consensus 194 ~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 223 (425)
+...+..|+.. +...+.+..+.+++....
T Consensus 236 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 236 AGNSKKLALND-QTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred hchhHHHHhhc-ccCcccCcccccccCCCC
Confidence 99999999987 888899999999877654
No 123
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.67 E-value=2.5e-09 Score=110.29 Aligned_cols=134 Identities=20% Similarity=0.301 Sum_probs=113.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEE
Q 014384 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 124 (425)
Q Consensus 53 ~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~ 124 (425)
...++||.||++.+.+.+|..+|..+|.|..|.+ .+|+|||+|..+++|.+||....++.+ |
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~---g------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF---G------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh---h-------
Confidence 3478999999999999999999999998877666 289999999999999999966666655 3
Q ss_pred eccccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEE-------eccEEEEEEcCHHH
Q 014384 125 TKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI-------RRNFAFVQYEVQED 197 (425)
Q Consensus 125 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~-------~~g~afV~f~~~~~ 197 (425)
...|+|.|+ |...|.++|+.++.++|.++.+.+ ++|.|+|.|.++.+
T Consensus 736 -------------------------K~~v~i~g~-pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~ 789 (881)
T KOG0128|consen 736 -------------------------KISVAISGP-PFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEAD 789 (881)
T ss_pred -------------------------hhhhheeCC-CCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcch
Confidence 135788889 888999999999999999998876 47899999999999
Q ss_pred HHHHHHHcCCCccCCeEEEEEEeee
Q 014384 198 ATRALDATNMSKLTDRVISVEYAVR 222 (425)
Q Consensus 198 A~~A~~~l~g~~~~g~~i~v~~a~~ 222 (425)
|..++..++...+.-..+.|....+
T Consensus 790 ~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 790 ASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhcccchhhhhhhcCccccccCC
Confidence 9999988888777777777766544
No 124
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.64 E-value=6.3e-08 Score=97.96 Aligned_cols=78 Identities=21% Similarity=0.371 Sum_probs=71.6
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-----------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCc
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-----------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGR 118 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~-----------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr 118 (425)
....++.|||+||++.+++++|...|+.||+|..|+|. ..+|||.|-+-.+|+.|+..|||..| .+.
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv--~~~ 247 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV--MEY 247 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee--eee
Confidence 45677899999999999999999999999999999983 67999999999999999999999999 899
Q ss_pred EEEEEEecccc
Q 014384 119 RLRVEWTKHER 129 (425)
Q Consensus 119 ~l~V~~a~~~~ 129 (425)
.|++.|++...
T Consensus 248 e~K~gWgk~V~ 258 (877)
T KOG0151|consen 248 EMKLGWGKAVP 258 (877)
T ss_pred eeeeccccccc
Confidence 99999986544
No 125
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.62 E-value=3.1e-07 Score=89.77 Aligned_cols=161 Identities=19% Similarity=0.307 Sum_probs=107.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEE-------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEE
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDR-VDM-------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 123 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~-v~i-------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~ 123 (425)
....+|-+.+||+.||++||.+||.-.-.|.. |.| +.|-|||+|++.+.|++|| .-|...| ..+-|.|.
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al-~rhre~i--GhRYIEvF 177 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIAL-GRHRENI--GHRYIEVF 177 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHH-HHHHHhh--ccceEEee
Confidence 35678999999999999999999998765544 333 3799999999999999999 4555566 46677775
Q ss_pred EeccccC---------------------CCCCC--------------------C-----------------CC-----CC
Q 014384 124 WTKHERG---------------------IRRPG--------------------G-----------------GS-----SA 140 (425)
Q Consensus 124 ~a~~~~~---------------------~~~~~--------------------~-----------------~~-----~~ 140 (425)
.+..... ..+.. . +. ..
T Consensus 178 ~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~ 257 (510)
T KOG4211|consen 178 RSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDP 257 (510)
T ss_pred hhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccccccccccccccc
Confidence 4321100 00000 0 00 00
Q ss_pred -CCC-------------CCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcE-EEEEE-----eccEEEEEEcCHHHHHH
Q 014384 141 -RRP-------------STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKI-ISVRI-----RRNFAFVQYEVQEDATR 200 (425)
Q Consensus 141 -~~~-------------~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v-~~v~~-----~~g~afV~f~~~~~A~~ 200 (425)
... .........++..+| |+..+..++..+|...-.+ +.|.+ ..|-|+|+|.+.++|..
T Consensus 258 ~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGl-py~a~~~di~nfFspl~p~~v~i~ig~dGr~TGEAdveF~t~edav~ 336 (510)
T KOG4211|consen 258 NYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGL-PYDATENDIANFFSPLNPYRVHIEIGPDGRATGEADVEFATGEDAVG 336 (510)
T ss_pred ccCCCCCcccCCCcccccCCCCCCceeeecCC-CccCCCcchhhhcCCCCceeEEEEeCCCCccCCcceeecccchhhHh
Confidence 000 000111267788999 8999999999999977655 33444 26799999999999999
Q ss_pred HHHHcCCCccCCeEEEE
Q 014384 201 ALDATNMSKLTDRVISV 217 (425)
Q Consensus 201 A~~~l~g~~~~g~~i~v 217 (425)
|+- -++..+..+-|.+
T Consensus 337 Ams-kd~anm~hrYVEl 352 (510)
T KOG4211|consen 337 AMG-KDGANMGHRYVEL 352 (510)
T ss_pred hhc-cCCcccCcceeee
Confidence 986 3555555555444
No 126
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.60 E-value=1.4e-07 Score=86.40 Aligned_cols=75 Identities=24% Similarity=0.455 Sum_probs=67.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEE
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 124 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~-------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~ 124 (425)
...++|+|.||++.|++++|++||..||.++.+.|+ .|.|-|.|...++|.+||+.|||+.+ +|+.|++..
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~l--dG~~mk~~~ 158 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVAL--DGRPMKIEI 158 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCccc--CCceeeeEE
Confidence 344789999999999999999999999988888883 79999999999999999999999888 999999987
Q ss_pred eccc
Q 014384 125 TKHE 128 (425)
Q Consensus 125 a~~~ 128 (425)
....
T Consensus 159 i~~~ 162 (243)
T KOG0533|consen 159 ISSP 162 (243)
T ss_pred ecCc
Confidence 6544
No 127
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.59 E-value=1.2e-07 Score=93.75 Aligned_cols=76 Identities=29% Similarity=0.532 Sum_probs=68.5
Q ss_pred CCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEE
Q 014384 148 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 219 (425)
Q Consensus 148 ~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 219 (425)
.-...|||.+| ...|...+|+.+|.+||+|+-..+. +.|+||+|.+.++|.+||..||.++|.|+.|.|+.
T Consensus 403 ~~gRNlWVSGL-SstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 403 TLGRNLWVSGL-SSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred ccccceeeecc-ccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 34578999999 6888899999999999999888875 46999999999999999999999999999999999
Q ss_pred eeeCC
Q 014384 220 AVRDD 224 (425)
Q Consensus 220 a~~~~ 224 (425)
++.+.
T Consensus 482 aKNEp 486 (940)
T KOG4661|consen 482 AKNEP 486 (940)
T ss_pred cccCc
Confidence 88763
No 128
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.55 E-value=3.8e-07 Score=71.69 Aligned_cols=73 Identities=14% Similarity=0.256 Sum_probs=60.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhc--CCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecC--CCcEEEE
Q 014384 55 RPIFCGNFEYDARQSDLERLFRRY--GKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGR--KGRRLRV 122 (425)
Q Consensus 55 ~~l~V~nL~~~~t~~~L~~lF~~~--G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~--~gr~l~V 122 (425)
+||+|.|||...|.++|.+++... |...-+.|+ .|||||.|.+++.|......++|..+.. ..+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 699999999999999999998864 666666663 7999999999999999999999998831 3666677
Q ss_pred EEecc
Q 014384 123 EWTKH 127 (425)
Q Consensus 123 ~~a~~ 127 (425)
.||.-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 77754
No 129
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.52 E-value=2.2e-07 Score=87.00 Aligned_cols=77 Identities=25% Similarity=0.424 Sum_probs=66.4
Q ss_pred CCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--ccEEEEEEcCHHHHHHHHHH-cCCCccCCeEEEEEEee
Q 014384 145 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDA-TNMSKLTDRVISVEYAV 221 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--~g~afV~f~~~~~A~~A~~~-l~g~~~~g~~i~v~~a~ 221 (425)
.....-.+|||++|. ..+++++|.++|.+||+|..+.+. +++|||+|.+.++|+.|.+. ++...|+|..|.|.|..
T Consensus 223 PeD~~I~tLyIg~l~-d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLN-DEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred CcccceeEEEecccc-cchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 344556899999994 578899999999999999999886 67999999999999988765 56678899999999988
Q ss_pred e
Q 014384 222 R 222 (425)
Q Consensus 222 ~ 222 (425)
.
T Consensus 302 ~ 302 (377)
T KOG0153|consen 302 P 302 (377)
T ss_pred C
Confidence 7
No 130
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.47 E-value=2.6e-07 Score=91.33 Aligned_cols=71 Identities=27% Similarity=0.494 Sum_probs=60.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEE
Q 014384 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 124 (425)
Q Consensus 53 ~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~ 124 (425)
...+|||.|||.++|+.+|+++|..||.|+...|. .+||||+|++.++++.||++ +-..| .++.|.|+-
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~i--g~~kl~Vee 363 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEI--GGRKLNVEE 363 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-Ccccc--CCeeEEEEe
Confidence 34569999999999999999999999999987772 28999999999999999954 45555 799999985
Q ss_pred ec
Q 014384 125 TK 126 (425)
Q Consensus 125 a~ 126 (425)
..
T Consensus 364 k~ 365 (419)
T KOG0116|consen 364 KR 365 (419)
T ss_pred cc
Confidence 43
No 131
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.41 E-value=3.3e-07 Score=84.14 Aligned_cols=77 Identities=23% Similarity=0.444 Sum_probs=69.1
Q ss_pred hhcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEE
Q 014384 49 AFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRL 120 (425)
Q Consensus 49 ~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l 120 (425)
....+...|||+|+...+|.++|+..|.-||.|..|.| .+|||||+|.+.+.++.|+. |||..| .|..|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i--~~~~i 172 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEI--PGPAI 172 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccc--ccccc
Confidence 45667899999999999999999999999999987777 38999999999999999995 999999 89999
Q ss_pred EEEEeccc
Q 014384 121 RVEWTKHE 128 (425)
Q Consensus 121 ~V~~a~~~ 128 (425)
.|.+....
T Consensus 173 ~vt~~r~~ 180 (231)
T KOG4209|consen 173 EVTLKRTN 180 (231)
T ss_pred eeeeeeee
Confidence 99987643
No 132
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.39 E-value=1.4e-06 Score=76.98 Aligned_cols=78 Identities=19% Similarity=0.348 Sum_probs=67.2
Q ss_pred CCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe---------ccEEEEEEcCHHHHHHHHHHcCCCccC---CeEE
Q 014384 148 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR---------RNFAFVQYEVQEDATRALDATNMSKLT---DRVI 215 (425)
Q Consensus 148 ~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~---------~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~i 215 (425)
....||||.+| |.++...+|..+|..|-.-+-+.|. +-+|||.|.+..+|.+|+.+|||..|+ +..|
T Consensus 32 ~~VRTLFVSGL-P~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 32 GAVRTLFVSGL-PNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred cccceeeeccC-CcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 34689999999 9999999999999998766555553 249999999999999999999999998 7899
Q ss_pred EEEEeeeCCCC
Q 014384 216 SVEYAVRDDDD 226 (425)
Q Consensus 216 ~v~~a~~~~~~ 226 (425)
++++|+.+...
T Consensus 111 hiElAKSNtK~ 121 (284)
T KOG1457|consen 111 HIELAKSNTKR 121 (284)
T ss_pred EeeehhcCccc
Confidence 99999886543
No 133
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.31 E-value=4e-06 Score=82.99 Aligned_cols=72 Identities=26% Similarity=0.424 Sum_probs=63.0
Q ss_pred CcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEee
Q 014384 150 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221 (425)
Q Consensus 150 ~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 221 (425)
..+|||.|| |..++..+|+++|..||.|+...|. ..||||+|.+.+++..||++- -..|+|+.|.|+...
T Consensus 288 ~~~i~V~nl-P~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 288 GLGIFVKNL-PPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEKR 365 (419)
T ss_pred ccceEeecC-CCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEecc
Confidence 356999999 8999999999999999999988874 169999999999999999864 788999999998765
Q ss_pred eC
Q 014384 222 RD 223 (425)
Q Consensus 222 ~~ 223 (425)
..
T Consensus 366 ~~ 367 (419)
T KOG0116|consen 366 PG 367 (419)
T ss_pred cc
Confidence 53
No 134
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.30 E-value=2.2e-06 Score=75.01 Aligned_cols=76 Identities=18% Similarity=0.343 Sum_probs=67.2
Q ss_pred CCCCcEEEEEcCCCCCCCHHHHHhhhccC-CcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEE
Q 014384 147 TRPSKTLFVINFDPYHTRTRDLERHFEPY-GKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217 (425)
Q Consensus 147 ~~~~~~l~V~nl~p~~~~~~~L~~~f~~~-G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 217 (425)
......++|..+ |..+.+.+|..+|.+| |.|..+.+. +|||||+|++.+.|.-|.+.||+..|.|+.|.|
T Consensus 46 ~~~~g~~~~~~~-p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 46 QEIEGVVYVDHI-PHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred cCCccceeeccc-ccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 445567888889 8999899999999988 788888883 689999999999999999999999999999999
Q ss_pred EEeeeC
Q 014384 218 EYAVRD 223 (425)
Q Consensus 218 ~~a~~~ 223 (425)
.+-.++
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 997765
No 135
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.25 E-value=4e-07 Score=86.43 Aligned_cols=61 Identities=15% Similarity=0.080 Sum_probs=53.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe----CCEEEEEEcCHHHHHHHHHhcCCCee
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK----SGFAFIYMDDERDAEDAIRGLDRTEF 113 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~----kg~aFV~F~~~~~A~~A~~~lng~~i 113 (425)
+..+||+|++|+..+...+|.++|..+|+|....+. .-+|.|+|....+...|+ .++|..+
T Consensus 149 eirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~hal-r~~gre~ 213 (479)
T KOG4676|consen 149 EIRRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHAL-RSHGRER 213 (479)
T ss_pred HHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHH-Hhcchhh
Confidence 344899999999999999999999999999887772 568889999999999999 6777766
No 136
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.25 E-value=4.1e-06 Score=62.79 Aligned_cols=71 Identities=23% Similarity=0.379 Sum_probs=49.6
Q ss_pred ceEEEcCCCCCCCHHH----HHHHHhhcC-CeeEEEEeCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEecccc
Q 014384 55 RPIFCGNFEYDARQSD----LERLFRRYG-KVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 129 (425)
Q Consensus 55 ~~l~V~nL~~~~t~~~----L~~lF~~~G-~V~~v~i~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~~ 129 (425)
..|+|.|||.+.+... |.+|+..|| +|..| ..+.|+|.|.+++.|..|+.-|+|..+ .|..|.|.|.....
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~~~tAilrF~~~~~A~RA~KRmegEdV--fG~kI~v~~~~~~r 78 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--SGGTAILRFPNQEFAERAQKRMEGEDV--FGNKISVSFSPKNR 78 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----TT-EEEEESSHHHHHHHHHHHTT--S--SSS--EEESS--S-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--eCCEEEEEeCCHHHHHHHHHhhccccc--ccceEEEEEcCCcc
Confidence 5799999999988655 567888886 56555 689999999999999999999999999 79999999985443
No 137
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.21 E-value=6.6e-06 Score=61.71 Aligned_cols=71 Identities=25% Similarity=0.360 Sum_probs=49.6
Q ss_pred cEEEEEcCCCCCCCHHH----HHhhhccCC-cEEEEEEeccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeCC
Q 014384 151 KTLFVINFDPYHTRTRD----LERHFEPYG-KIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDD 224 (425)
Q Consensus 151 ~~l~V~nl~p~~~~~~~----L~~~f~~~G-~v~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~ 224 (425)
..|+|.|| |...+... |++++..+| .|..| ..+.|+|.|.+++.|..|++.|+|..+.|..|.|.|.....
T Consensus 3 s~L~V~NL-P~~~d~~~I~~RL~qLsdNCGGkVl~v--~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~r 78 (90)
T PF11608_consen 3 SLLYVSNL-PTNKDPSSIKNRLRQLSDNCGGKVLSV--SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKNR 78 (90)
T ss_dssp EEEEEES---TTS-HHHHHHHHHHHHHTTT--EEE----TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S-
T ss_pred cEEEEecC-CCCCCHHHHHHHHHHHhhccCCEEEEE--eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCcc
Confidence 46899999 77776544 678888887 56655 67999999999999999999999999999999999986653
No 138
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.18 E-value=6.3e-07 Score=78.86 Aligned_cols=76 Identities=20% Similarity=0.184 Sum_probs=68.1
Q ss_pred CCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEec------cEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEE
Q 014384 146 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRR------NFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 219 (425)
Q Consensus 146 ~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~~------g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 219 (425)
..+...||||+|| ...++++-|.++|-+.|+|..|.|+. .||||.|.++-...-|++.|||..+.+.+|.|.+
T Consensus 5 aae~drtl~v~n~-~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 5 AAEMDRTLLVQNM-YSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred CcchhhHHHHHhh-hhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhccc
Confidence 3455689999999 78899999999999999999999973 3999999999999999999999999999999888
Q ss_pred eee
Q 014384 220 AVR 222 (425)
Q Consensus 220 a~~ 222 (425)
-..
T Consensus 84 r~G 86 (267)
T KOG4454|consen 84 RCG 86 (267)
T ss_pred ccC
Confidence 544
No 139
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.14 E-value=1.6e-06 Score=86.16 Aligned_cols=69 Identities=33% Similarity=0.480 Sum_probs=63.6
Q ss_pred CCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe---ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEE
Q 014384 147 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR---RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 216 (425)
Q Consensus 147 ~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 216 (425)
..+..+|+|.|| +..+++++|..+|+.||+|..|+.. .+..||+|.|..+|+.|+++|++.+|.|+.|.
T Consensus 72 ~~~~~~L~v~nl-~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNL-PRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEec-CCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 455679999999 7899999999999999999998773 78999999999999999999999999999888
No 140
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.13 E-value=8.8e-06 Score=74.65 Aligned_cols=76 Identities=26% Similarity=0.375 Sum_probs=68.0
Q ss_pred CCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe-------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEe
Q 014384 148 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220 (425)
Q Consensus 148 ~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 220 (425)
....+|+|.|| ++.+.+++|+++|..||.++.+.+. .|.|-|.|...+||..|++.+||..++|..+.+...
T Consensus 81 ~~~~~v~v~NL-~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNL-PYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecC-CcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 33478999999 8999999999999999988888773 689999999999999999999999999999999987
Q ss_pred eeCC
Q 014384 221 VRDD 224 (425)
Q Consensus 221 ~~~~ 224 (425)
....
T Consensus 160 ~~~~ 163 (243)
T KOG0533|consen 160 SSPS 163 (243)
T ss_pred cCcc
Confidence 7653
No 141
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.12 E-value=4.4e-05 Score=72.61 Aligned_cols=151 Identities=19% Similarity=0.292 Sum_probs=102.5
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhc-----CCeeEEEE---eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRY-----GKVDRVDM---KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 121 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~-----G~V~~v~i---~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~ 121 (425)
....+..|-..+||+..++.+|..+|.-. |.+.++.. ..|.|.|.|.+++.-+.|++ -+.+.+ .++.|.
T Consensus 56 ~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~--g~ryie 132 (508)
T KOG1365|consen 56 SADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHM--GTRYIE 132 (508)
T ss_pred ccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhc--cCCcee
Confidence 34556778888999999999999999864 33333333 37899999999999999994 455555 478888
Q ss_pred EEEeccccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhcc-----CCc--EEEEEE----eccEEEE
Q 014384 122 VEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEP-----YGK--IISVRI----RRNFAFV 190 (425)
Q Consensus 122 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~-----~G~--v~~v~~----~~g~afV 190 (425)
|--+.......-.++..............-.|-+.+| |+.+++.++..+|.. -|. |..|.- +.|-|||
T Consensus 133 vYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGL-Pfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFv 211 (508)
T KOG1365|consen 133 VYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGL-PFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFV 211 (508)
T ss_pred eeccCchhheEecCCccccCCCCCCcccceEEEecCC-CCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEE
Confidence 8766554433222222211111111122345667899 999999999999962 232 333333 2679999
Q ss_pred EEcCHHHHHHHHHH
Q 014384 191 QYEVQEDATRALDA 204 (425)
Q Consensus 191 ~f~~~~~A~~A~~~ 204 (425)
.|..+++|+.|+.+
T Consensus 212 lfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 212 LFACEEDAQFALRK 225 (508)
T ss_pred EecCHHHHHHHHHH
Confidence 99999999999864
No 142
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.06 E-value=3.6e-06 Score=75.84 Aligned_cols=152 Identities=14% Similarity=0.179 Sum_probs=107.1
Q ss_pred ceEEEcCCCCCCCHHH-H--HHHHhhcCCeeEEEE-------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEE
Q 014384 55 RPIFCGNFEYDARQSD-L--ERLFRRYGKVDRVDM-------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 124 (425)
Q Consensus 55 ~~l~V~nL~~~~t~~~-L--~~lF~~~G~V~~v~i-------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~ 124 (425)
-.++++|+-..+..+- | ...|+.|-.+....+ ..+++|+.|.....-.++...-+++.++ -.. |..
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~--~~~--VR~ 172 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIG--KPP--VRL 172 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhcccccccccc--Ccc--eee
Confidence 3566777766666554 3 667777665544443 2789999999988888888777888772 222 333
Q ss_pred eccccCCCCCCCCCCCCCC-CCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEE--------eccEEEEEEcCH
Q 014384 125 TKHERGIRRPGGGSSARRP-STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI--------RRNFAFVQYEVQ 195 (425)
Q Consensus 125 a~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~--------~~g~afV~f~~~ 195 (425)
+-...- .... .........||.+.| ...++.+.|-..|.+|-......+ .+||+||.|.+.
T Consensus 173 a~gtsw---------edPsl~ew~~~DfRIfcgdl-gNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~p 242 (290)
T KOG0226|consen 173 AAGTSW---------EDPSLAEWDEDDFRIFCGDL-GNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDP 242 (290)
T ss_pred cccccc---------CCcccccCccccceeecccc-cccccHHHHHHHHHhccchhhccccccccccccccceeeeecCH
Confidence 222110 0111 122344568999999 788999999999999875544444 278999999999
Q ss_pred HHHHHHHHHcCCCccCCeEEEEEEe
Q 014384 196 EDATRALDATNMSKLTDRVISVEYA 220 (425)
Q Consensus 196 ~~A~~A~~~l~g~~~~g~~i~v~~a 220 (425)
.++..|+.+|+|..++.+.|++.-+
T Consensus 243 ad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 243 ADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred HHHHHHHHhhcccccccchhHhhhh
Confidence 9999999999999999999887543
No 143
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.04 E-value=9.8e-06 Score=65.15 Aligned_cols=69 Identities=19% Similarity=0.388 Sum_probs=43.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeCC--EEEEEEcCHHHHHHHHHhcCCC---eecCCCcEEEEE
Q 014384 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG--FAFIYMDDERDAEDAIRGLDRT---EFGRKGRRLRVE 123 (425)
Q Consensus 55 ~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~kg--~aFV~F~~~~~A~~A~~~lng~---~ig~~gr~l~V~ 123 (425)
..|+|.++...++-++|+++|..||.|..|.+..| .|||-|.+++.|+.|+..+.-. .+-+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 46899999999999999999999999999999754 8999999999999999866433 222245555544
No 144
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.01 E-value=1.7e-05 Score=63.74 Aligned_cols=69 Identities=20% Similarity=0.367 Sum_probs=45.2
Q ss_pred cEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEecc--EEEEEEcCHHHHHHHHHHcCCC-----ccCCeEEEEEEe
Q 014384 151 KTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN--FAFVQYEVQEDATRALDATNMS-----KLTDRVISVEYA 220 (425)
Q Consensus 151 ~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~~g--~afV~f~~~~~A~~A~~~l~g~-----~~~g~~i~v~~a 220 (425)
..|+|.++ ...++.++|+++|.+||.|.+|.+.+| .|||.|.++++|+.|+..+... .|.+..+.+..-
T Consensus 2 ~il~~~g~-~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vL 77 (105)
T PF08777_consen 2 CILKFSGL-GEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVL 77 (105)
T ss_dssp -EEEEEE---SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE--
T ss_pred eEEEEecC-CCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEEC
Confidence 56888998 677789999999999999999999977 9999999999999998876443 566777766653
No 145
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.95 E-value=2.7e-05 Score=71.55 Aligned_cols=75 Identities=23% Similarity=0.355 Sum_probs=67.1
Q ss_pred CCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEE
Q 014384 147 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218 (425)
Q Consensus 147 ~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 218 (425)
......+||+|+ .+.++.++++.+|+.||.|..+.|+ +|||||+|.+.+.+..|+. ||+..|.|..|.|.
T Consensus 98 ~~d~~sv~v~nv-d~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 98 EVDAPSVWVGNV-DFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred ccCCceEEEecc-ccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 455689999999 5777788899999999999877774 6799999999999999999 99999999999999
Q ss_pred EeeeC
Q 014384 219 YAVRD 223 (425)
Q Consensus 219 ~a~~~ 223 (425)
+....
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 98775
No 146
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.93 E-value=2.2e-05 Score=79.79 Aligned_cols=164 Identities=13% Similarity=0.133 Sum_probs=114.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE-------e-CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEE
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM-------K-SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 123 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i-------~-kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~ 123 (425)
.+.+.|-+.+++.++.+.++.++|--. .|..+.| + .|.++|+|..+.++.+|+. -|.+.+ -.+.+.|.
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~--~~R~~q~~ 384 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDD--VNRPFQTG 384 (944)
T ss_pred chhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhh--hhcceeec
Confidence 344566677899999999999998653 2344444 2 7999999999999999984 444444 37777774
Q ss_pred Eecccc--------CCCCCC------CC---------CCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEE
Q 014384 124 WTKHER--------GIRRPG------GG---------SSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIIS 180 (425)
Q Consensus 124 ~a~~~~--------~~~~~~------~~---------~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~ 180 (425)
.+-... ..+.+. +. ........+.....+|||..| |..++..++.++|.....|++
T Consensus 385 P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~l-P~~t~~~~~v~~f~~~~~Ved 463 (944)
T KOG4307|consen 385 PPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQL-PVMTPIVPPVNKFMGAAAVED 463 (944)
T ss_pred CCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccC-Cccccccchhhhhhhhhhhhh
Confidence 432111 000000 00 001112334556689999999 999999999999998887777
Q ss_pred -EEEe-------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEe
Q 014384 181 -VRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220 (425)
Q Consensus 181 -v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 220 (425)
|.|. .+.|||+|..++++..|+...+...++.+.|.|.-.
T Consensus 464 ~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 464 FIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred eeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 6663 569999999999999998877777777788888753
No 147
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.92 E-value=1.5e-05 Score=81.25 Aligned_cols=73 Identities=26% Similarity=0.361 Sum_probs=66.4
Q ss_pred CCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe-----------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEE
Q 014384 148 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-----------RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 216 (425)
Q Consensus 148 ~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 216 (425)
+..+.|||+|| +..++++.|...|..||+|..|.|+ ..|+||.|-+-.||+.|++.|+|..+.+..++
T Consensus 172 P~TTNlyv~Nl-npsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 172 PQTTNLYVGNL-NPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CcccceeeecC-CccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 44678999999 5677799999999999999999985 56999999999999999999999999999999
Q ss_pred EEEee
Q 014384 217 VEYAV 221 (425)
Q Consensus 217 v~~a~ 221 (425)
+.|++
T Consensus 251 ~gWgk 255 (877)
T KOG0151|consen 251 LGWGK 255 (877)
T ss_pred ecccc
Confidence 99973
No 148
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.91 E-value=8.5e-06 Score=77.19 Aligned_cols=78 Identities=19% Similarity=0.286 Sum_probs=68.1
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEE--------eCCEEEEEEcCHHHHHHHHHhcCCCee
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDR--------VDM--------KSGFAFIYMDDERDAEDAIRGLDRTEF 113 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~--------v~i--------~kg~aFV~F~~~~~A~~A~~~lng~~i 113 (425)
......+|||-+|+..+|+++|.++|.+||.|.. |+| .|+-|.|.|+++..|++|+..++++.|
T Consensus 62 ~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 62 DKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred cccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 3556789999999999999999999999998762 333 389999999999999999999999999
Q ss_pred cCCCcEEEEEEecccc
Q 014384 114 GRKGRRLRVEWTKHER 129 (425)
Q Consensus 114 g~~gr~l~V~~a~~~~ 129 (425)
.+.+|+|.+|....
T Consensus 142 --~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 142 --CGNTIKVSLAERRT 155 (351)
T ss_pred --cCCCchhhhhhhcc
Confidence 89999998886544
No 149
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.87 E-value=2e-05 Score=71.20 Aligned_cols=75 Identities=20% Similarity=0.492 Sum_probs=63.4
Q ss_pred hhhhcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCc
Q 014384 47 IAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGR 118 (425)
Q Consensus 47 ~~~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr 118 (425)
..+.+...-.||+|.|...++.+.|...|.+|-.....++ ++||+||.|.++.++..|+.+|||+.+ ..+
T Consensus 183 l~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyV--gsr 260 (290)
T KOG0226|consen 183 LAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYV--GSR 260 (290)
T ss_pred cccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccc--ccc
Confidence 3455667789999999999999999999999965544333 489999999999999999999999999 577
Q ss_pred EEEEE
Q 014384 119 RLRVE 123 (425)
Q Consensus 119 ~l~V~ 123 (425)
+|++.
T Consensus 261 piklR 265 (290)
T KOG0226|consen 261 PIKLR 265 (290)
T ss_pred hhHhh
Confidence 77664
No 150
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.86 E-value=8.4e-05 Score=58.49 Aligned_cols=72 Identities=24% Similarity=0.301 Sum_probs=60.7
Q ss_pred cEEEEEcCCCCCCCHHHHHhhhcc--CCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccC----CeEEE
Q 014384 151 KTLFVINFDPYHTRTRDLERHFEP--YGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLT----DRVIS 216 (425)
Q Consensus 151 ~~l~V~nl~p~~~~~~~L~~~f~~--~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~i~ 216 (425)
+||.|.|| |...++++|.+++.. .|....+.+| .|||||-|.+++.|..-.+.++|..+. .+.+.
T Consensus 2 TTvMirNI-Pn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 2 TTVMIRNI-PNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred eeEEEecC-CCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 68999999 899999999988865 3556666665 689999999999999999999998886 57788
Q ss_pred EEEeeeC
Q 014384 217 VEYAVRD 223 (425)
Q Consensus 217 v~~a~~~ 223 (425)
|.||.-+
T Consensus 81 i~yAriQ 87 (97)
T PF04059_consen 81 ISYARIQ 87 (97)
T ss_pred EehhHhh
Confidence 8888654
No 151
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.77 E-value=4.7e-05 Score=71.20 Aligned_cols=70 Identities=19% Similarity=0.418 Sum_probs=59.9
Q ss_pred ceEEEcCCCCCCCHHHH------HHHHhhcCCeeEEEEeC---------CEE--EEEEcCHHHHHHHHHhcCCCeecCCC
Q 014384 55 RPIFCGNFEYDARQSDL------ERLFRRYGKVDRVDMKS---------GFA--FIYMDDERDAEDAIRGLDRTEFGRKG 117 (425)
Q Consensus 55 ~~l~V~nL~~~~t~~~L------~~lF~~~G~V~~v~i~k---------g~a--FV~F~~~~~A~~A~~~lng~~ig~~g 117 (425)
.-|||-+|++.+..+++ .++|++||+|..|.+.+ +.+ ||.|.+.++|..||.+.+|..+ +|
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~--DG 192 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL--DG 192 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc--cC
Confidence 45899999998877662 57999999999999842 223 9999999999999999999999 99
Q ss_pred cEEEEEEec
Q 014384 118 RRLRVEWTK 126 (425)
Q Consensus 118 r~l~V~~a~ 126 (425)
+.|+..|..
T Consensus 193 r~lkatYGT 201 (480)
T COG5175 193 RVLKATYGT 201 (480)
T ss_pred ceEeeecCc
Confidence 999998754
No 152
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.77 E-value=5.8e-05 Score=52.62 Aligned_cols=50 Identities=22% Similarity=0.394 Sum_probs=43.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcCHHHHHHHH
Q 014384 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAI 105 (425)
Q Consensus 55 ~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--kg~aFV~F~~~~~A~~A~ 105 (425)
+.|-|.+.++...+..|. .|..||+|..+.+. ...+||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~vl~-~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVLE-HFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHHH-HHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 568899998877655555 88899999999997 889999999999999996
No 153
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=0.00012 Score=72.51 Aligned_cols=73 Identities=19% Similarity=0.320 Sum_probs=59.5
Q ss_pred hhhcCCCceEEEcCCCCCCCHHHHHHHHh-hcCCeeEEEE--------eCCEEEEEEcCHHHHHHHHH----hcCCCeec
Q 014384 48 AAFEAMMRPIFCGNFEYDARQSDLERLFR-RYGKVDRVDM--------KSGFAFIYMDDERDAEDAIR----GLDRTEFG 114 (425)
Q Consensus 48 ~~~~~~~~~l~V~nL~~~~t~~~L~~lF~-~~G~V~~v~i--------~kg~aFV~F~~~~~A~~A~~----~lng~~ig 114 (425)
.+.-.+.+|||||+||--+|.++|..+|+ .||.|..+-| ++|-|-|.|.+..+=.+||. .|+...|
T Consensus 364 sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~- 442 (520)
T KOG0129|consen 364 NQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDI- 442 (520)
T ss_pred CcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEecccc-
Confidence 34556779999999999999999999999 7999998877 48999999999999888885 3455555
Q ss_pred CCCcEEEEE
Q 014384 115 RKGRRLRVE 123 (425)
Q Consensus 115 ~~gr~l~V~ 123 (425)
.+.|.|+
T Consensus 443 --~KRVEIk 449 (520)
T KOG0129|consen 443 --DKRVEIK 449 (520)
T ss_pred --ceeeeec
Confidence 4455544
No 154
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.70 E-value=3.9e-05 Score=80.29 Aligned_cols=117 Identities=17% Similarity=0.259 Sum_probs=90.4
Q ss_pred eeeEEEEeCCCCcccccccCCcceeecccccccchhhhhh-hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeC
Q 014384 10 CHYLLIVYSHSVWPVQKKYLPRRLYVLGFRRSHSQLSIAA-FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS 88 (425)
Q Consensus 10 ~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~k 88 (425)
..|+|+.|.+-.....++.......+..+... +...+ ....++.|||++|.+-+....|...|..||.|..|.+-+
T Consensus 413 sa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r---~glG~~kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h 489 (975)
T KOG0112|consen 413 SAYAFVSLLNTDMTPSAKFEESGPLIGNGTHR---IGLGQPKSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH 489 (975)
T ss_pred cchhhhhhhccccCcccchhhcCCccccCccc---ccccccccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc
Confidence 35888888776655555544433333333211 11222 456788999999999999999999999999999999964
Q ss_pred --CEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEecccc
Q 014384 89 --GFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 129 (425)
Q Consensus 89 --g~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~~ 129 (425)
-||||+|++...|.+|++.|-|..||.-.+.|.|.|+...-
T Consensus 490 gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 490 GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPG 532 (975)
T ss_pred CCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCCC
Confidence 59999999999999999999999998667889999987654
No 155
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.70 E-value=3.1e-05 Score=77.46 Aligned_cols=77 Identities=12% Similarity=0.198 Sum_probs=66.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHh-hcCCeeEEEE--eCCEEEEEEcCHHHHHHHHHhcCCCeecC-CCcEEEEEEecc
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFR-RYGKVDRVDM--KSGFAFIYMDDERDAEDAIRGLDRTEFGR-KGRRLRVEWTKH 127 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~-~~G~V~~v~i--~kg~aFV~F~~~~~A~~A~~~lng~~ig~-~gr~l~V~~a~~ 127 (425)
.....|+|.||---+|.-+|+.|+. .+|.|+++|| .+..|||.|.+.++|.+..++|||+.|.. +.+.|.|.|...
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~~ 521 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVRA 521 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecch
Confidence 4568999999999999999999999 6788888887 48899999999999999999999998852 678888888654
Q ss_pred c
Q 014384 128 E 128 (425)
Q Consensus 128 ~ 128 (425)
.
T Consensus 522 d 522 (718)
T KOG2416|consen 522 D 522 (718)
T ss_pred h
Confidence 3
No 156
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.57 E-value=0.00018 Score=67.80 Aligned_cols=77 Identities=17% Similarity=0.277 Sum_probs=66.4
Q ss_pred CCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEE--------EEE-------eccEEEEEEcCHHHHHHHHHHcCCCccC
Q 014384 147 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIIS--------VRI-------RRNFAFVQYEVQEDATRALDATNMSKLT 211 (425)
Q Consensus 147 ~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~--------v~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~ 211 (425)
...++.|||.|| |..+|.+++.++|.+||.|.. |.| .+|-|.|.|.-.+.+.-|++.|++..|.
T Consensus 131 ~~~Nt~VYVsgL-P~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGL-PLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCC-CCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 344567999999 899999999999999998753 233 2789999999999999999999999999
Q ss_pred CeEEEEEEeeeCC
Q 014384 212 DRVISVEYAVRDD 224 (425)
Q Consensus 212 g~~i~v~~a~~~~ 224 (425)
|+.|.|+.|+-+.
T Consensus 210 g~~~rVerAkfq~ 222 (382)
T KOG1548|consen 210 GKKLRVERAKFQM 222 (382)
T ss_pred CcEEEEehhhhhh
Confidence 9999999987653
No 157
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.53 E-value=5.3e-05 Score=73.16 Aligned_cols=64 Identities=19% Similarity=0.261 Sum_probs=56.6
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe---------------------CCEEEEEEcCHHHHHHHHHhc
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK---------------------SGFAFIYMDDERDAEDAIRGL 108 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~---------------------kg~aFV~F~~~~~A~~A~~~l 108 (425)
+..+.++|.+.|||.+-..+.|.+||+.||.|..|.|. +-+|||+|+..+.|.+|.+.|
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 44578999999999999999999999999999999982 458999999999999999888
Q ss_pred CCCee
Q 014384 109 DRTEF 113 (425)
Q Consensus 109 ng~~i 113 (425)
|....
T Consensus 307 ~~e~~ 311 (484)
T KOG1855|consen 307 NPEQN 311 (484)
T ss_pred chhhh
Confidence 66544
No 158
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.48 E-value=0.0003 Score=49.04 Aligned_cols=50 Identities=26% Similarity=0.610 Sum_probs=42.6
Q ss_pred cEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--ccEEEEEEcCHHHHHHHH
Q 014384 151 KTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRAL 202 (425)
Q Consensus 151 ~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--~g~afV~f~~~~~A~~A~ 202 (425)
+.|-|.|+ +... .+.|..+|..||+|..+.+. ...++|+|.+..+|++||
T Consensus 2 ~wI~V~Gf-~~~~-~~~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGF-PPDL-AEEVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeE-CchH-HHHHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 56889999 4444 56677799999999999998 779999999999999985
No 159
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.45 E-value=6.4e-05 Score=68.21 Aligned_cols=58 Identities=22% Similarity=0.481 Sum_probs=49.8
Q ss_pred HHHHHHHh-hcCCeeEEEEe-------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEeccc
Q 014384 69 SDLERLFR-RYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHE 128 (425)
Q Consensus 69 ~~L~~lF~-~~G~V~~v~i~-------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~ 128 (425)
++|...|. +||+|+++++. .|.+||.|...++|++|+..||+..| .|++|..++...+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~--~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWY--NGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccc--cCCcceeeecCcC
Confidence 44555555 89999999873 79999999999999999999999999 8999999987543
No 160
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.44 E-value=6.7e-06 Score=85.50 Aligned_cols=154 Identities=20% Similarity=0.183 Sum_probs=116.1
Q ss_pred CCCceEEEcCCCCCCCHH-HHHHHHhhcCCeeEEEEeC--------CEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEE
Q 014384 52 AMMRPIFCGNFEYDARQS-DLERLFRRYGKVDRVDMKS--------GFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 122 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~-~L~~lF~~~G~V~~v~i~k--------g~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V 122 (425)
.....+++.|+.+..... .+...|..+|.|+.|.+.+ .++++++....+++.|. ...+..+ .++.+.|
T Consensus 569 ~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat-~pa~~~~--a~~~~av 645 (881)
T KOG0128|consen 569 LERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESAT-VPAGGAL--ANRSAAV 645 (881)
T ss_pred hhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcc-ccccccc--CCccccC
Confidence 344677888998877766 6788999999999999953 38889999999999998 7777777 5888888
Q ss_pred EEeccccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEE--------eccEEEEEEcC
Q 014384 123 EWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI--------RRNFAFVQYEV 194 (425)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~--------~~g~afV~f~~ 194 (425)
..++........ ...........++||.|| +..+.+.+|...|..+|.+..+.+ .+|+|||+|..
T Consensus 646 ~~ad~~~~~~~~------kvs~n~~R~~~~~fvsnl-~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~ 718 (881)
T KOG0128|consen 646 GLADAEEKEENF------KVSPNEIRDLIKIFVSNL-SPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLK 718 (881)
T ss_pred CCCCchhhhhcc------CcCchHHHHHHHHHHhhc-chhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeec
Confidence 777655422111 111111233468899999 677779999999999998777665 27899999999
Q ss_pred HHHHHHHHHHcCCCccCCeEE
Q 014384 195 QEDATRALDATNMSKLTDRVI 215 (425)
Q Consensus 195 ~~~A~~A~~~l~g~~~~g~~i 215 (425)
++++.+||.....+.++...+
T Consensus 719 ~~~~~aaV~f~d~~~~gK~~v 739 (881)
T KOG0128|consen 719 PEHAGAAVAFRDSCFFGKISV 739 (881)
T ss_pred CCchhhhhhhhhhhhhhhhhh
Confidence 999999998777666663333
No 161
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.43 E-value=0.00056 Score=54.19 Aligned_cols=70 Identities=17% Similarity=0.178 Sum_probs=52.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCeeEEE-------------E--eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCc
Q 014384 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVD-------------M--KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGR 118 (425)
Q Consensus 54 ~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~-------------i--~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr 118 (425)
.+-|.|-+.|+. ....|.++|++||+|.+.. + -.....|.|.++.+|.+|| ..||..| .|.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~--~g~ 81 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIF--SGS 81 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEE--TTC
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEE--cCc
Confidence 456888899887 5678889999999998875 2 2568899999999999999 8999999 564
Q ss_pred -EEEEEEecc
Q 014384 119 -RLRVEWTKH 127 (425)
Q Consensus 119 -~l~V~~a~~ 127 (425)
.+-|.+++.
T Consensus 82 ~mvGV~~~~~ 91 (100)
T PF05172_consen 82 LMVGVKPCDP 91 (100)
T ss_dssp EEEEEEE-HH
T ss_pred EEEEEEEcHH
Confidence 455777644
No 162
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.32 E-value=0.00015 Score=65.77 Aligned_cols=62 Identities=19% Similarity=0.281 Sum_probs=56.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------------------CCEEEEEEcCHHHHHHHHHhcCCCe
Q 014384 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------------------SGFAFIYMDDERDAEDAIRGLDRTE 112 (425)
Q Consensus 53 ~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------------------kg~aFV~F~~~~~A~~A~~~lng~~ 112 (425)
.+-.||++|||+.+...-|+++|+.||.|-.|.|. -.-|+|+|.+...|..+...|||.+
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 56799999999999999999999999999999982 1246899999999999999999999
Q ss_pred ec
Q 014384 113 FG 114 (425)
Q Consensus 113 ig 114 (425)
||
T Consensus 153 Ig 154 (278)
T KOG3152|consen 153 IG 154 (278)
T ss_pred cC
Confidence 95
No 163
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.28 E-value=0.0011 Score=49.99 Aligned_cols=57 Identities=18% Similarity=0.286 Sum_probs=46.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcCHHHHHHHHHhcCC
Q 014384 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDR 110 (425)
Q Consensus 53 ~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~kg~aFV~F~~~~~A~~A~~~lng 110 (425)
-....||+ +|..+...||.+||+.||.|.--+|.-..|||...+.+.|..|+..+.-
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWINDTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEEEEEECTTEEEEEECCCHHHHHHHHHHTT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEEEEEEcCCcEEEEeecHHHHHHHHHHhcc
Confidence 34566666 9999999999999999999998889999999999999999999987763
No 164
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.27 E-value=0.00057 Score=68.31 Aligned_cols=76 Identities=20% Similarity=0.310 Sum_probs=60.5
Q ss_pred hcCCCceEEEcCCCCCCC------HHHHHHHHhhcCCeeEEEEe-------CCEEEEEEcCHHHHHHHHHhcCCCeecCC
Q 014384 50 FEAMMRPIFCGNFEYDAR------QSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRK 116 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t------~~~L~~lF~~~G~V~~v~i~-------kg~aFV~F~~~~~A~~A~~~lng~~ig~~ 116 (425)
.+.-...|+|.|+|---. ..-|..+|+++|+|..+.++ +||+|++|.+..+|+.|++.|||+.|- +
T Consensus 54 ~eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ld-k 132 (698)
T KOG2314|consen 54 AEGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLD-K 132 (698)
T ss_pred cCCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceec-c
Confidence 345567899999985322 23466899999999988884 899999999999999999999999985 5
Q ss_pred CcEEEEEEec
Q 014384 117 GRRLRVEWTK 126 (425)
Q Consensus 117 gr~l~V~~a~ 126 (425)
..++.|..-+
T Consensus 133 nHtf~v~~f~ 142 (698)
T KOG2314|consen 133 NHTFFVRLFK 142 (698)
T ss_pred cceEEeehhh
Confidence 7777775433
No 165
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.24 E-value=0.00068 Score=63.64 Aligned_cols=77 Identities=25% Similarity=0.451 Sum_probs=62.0
Q ss_pred CCCCcEEEEEcCCCCCCCHH---HH--HhhhccCCcEEEEEEec---------c--EEEEEEcCHHHHHHHHHHcCCCcc
Q 014384 147 TRPSKTLFVINFDPYHTRTR---DL--ERHFEPYGKIISVRIRR---------N--FAFVQYEVQEDATRALDATNMSKL 210 (425)
Q Consensus 147 ~~~~~~l~V~nl~p~~~~~~---~L--~~~f~~~G~v~~v~~~~---------g--~afV~f~~~~~A~~A~~~l~g~~~ 210 (425)
....+-+||-+|+|..+.++ .| .++|.+||.|..|.+.+ + -.||+|.+.++|..||.+++|..+
T Consensus 111 VvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~ 190 (480)
T COG5175 111 VVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL 190 (480)
T ss_pred eeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc
Confidence 34456789999966665554 23 47899999999999852 2 248999999999999999999999
Q ss_pred CCeEEEEEEeeeC
Q 014384 211 TDRVISVEYAVRD 223 (425)
Q Consensus 211 ~g~~i~v~~a~~~ 223 (425)
+|+.|+..|...+
T Consensus 191 DGr~lkatYGTTK 203 (480)
T COG5175 191 DGRVLKATYGTTK 203 (480)
T ss_pred cCceEeeecCchH
Confidence 9999999996543
No 166
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.22 E-value=0.00083 Score=68.72 Aligned_cols=70 Identities=20% Similarity=0.423 Sum_probs=60.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCe-eEEEE-------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEE
Q 014384 53 MMRPIFCGNFEYDARQSDLERLFRRYGKV-DRVDM-------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 124 (425)
Q Consensus 53 ~~~~l~V~nL~~~~t~~~L~~lF~~~G~V-~~v~i-------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~ 124 (425)
..++|-|.|+|.+++.+||.+||.-|-.+ .+|.+ ..|-|.|.|++.++|..|...|++..| ..++|.|.+
T Consensus 866 Gp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i--~nr~V~l~i 943 (944)
T KOG4307|consen 866 GPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKI--RNRVVSLRI 943 (944)
T ss_pred CCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcc--cceeEEEEe
Confidence 44699999999999999999999999755 34555 379999999999999999999999999 688887754
No 167
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.14 E-value=0.0018 Score=54.42 Aligned_cols=56 Identities=25% Similarity=0.433 Sum_probs=48.2
Q ss_pred HHHHHHHhhcCCeeEEEEeCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEecc
Q 014384 69 SDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKH 127 (425)
Q Consensus 69 ~~L~~lF~~~G~V~~v~i~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~ 127 (425)
.+|.+.|..||+|.-|++--+.-+|.|.+-+.|-+|+ .|+|..| .|+.|+|.+..+
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~~mwVTF~dg~sALaal-s~dg~~v--~g~~l~i~LKtp 106 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGDTMWVTFRDGQSALAAL-SLDGIQV--NGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETTCEEEEESSCHHHHHHH-HGCCSEE--TTEEEEEEE---
T ss_pred HHHHHHHHhCCceEEEEEeCCeEEEEECccHHHHHHH-ccCCcEE--CCEEEEEEeCCc
Confidence 3678889999999999998899999999999999999 8999999 799999987654
No 168
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=97.12 E-value=0.002 Score=53.36 Aligned_cols=76 Identities=14% Similarity=0.244 Sum_probs=61.1
Q ss_pred hhhcCCCceEEEcCCCCCCC----HHHHHHHHhhcCCeeEEEEe-CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEE
Q 014384 48 AAFEAMMRPIFCGNFEYDAR----QSDLERLFRRYGKVDRVDMK-SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 122 (425)
Q Consensus 48 ~~~~~~~~~l~V~nL~~~~t----~~~L~~lF~~~G~V~~v~i~-kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V 122 (425)
...+.++.||.|.=|..++. ...|...++.||+|..|.+. +..|.|.|.|..+|-.|+.+++...- |..+.+
T Consensus 80 ~~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrqsavVvF~d~~SAC~Av~Af~s~~p---gtm~qC 156 (166)
T PF15023_consen 80 NTKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQSAVVVFKDITSACKAVSAFQSRAP---GTMFQC 156 (166)
T ss_pred cCCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCceEEEEehhhHHHHHHHHhhcCCCC---CceEEe
Confidence 34567789999987766654 23455667889999999996 88999999999999999999988654 888888
Q ss_pred EEec
Q 014384 123 EWTK 126 (425)
Q Consensus 123 ~~a~ 126 (425)
.|-.
T Consensus 157 sWqq 160 (166)
T PF15023_consen 157 SWQQ 160 (166)
T ss_pred eccc
Confidence 8854
No 169
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.07 E-value=0.0025 Score=53.63 Aligned_cols=77 Identities=18% Similarity=0.288 Sum_probs=55.3
Q ss_pred CCCCCCcEEEEEcCC---CC--CCC---HHHHHhhhccCCcEEEEEEeccEEEEEEcCHHHHHHHHHHcCCCccCCeEEE
Q 014384 145 TNTRPSKTLFVINFD---PY--HTR---TRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVIS 216 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~---p~--~~~---~~~L~~~f~~~G~v~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 216 (425)
..++|..||.|.=+. +. ... -.+|.+.|..||.|.-+++..+.-+|+|.+-+.|.+|+. |+|.+++|+.|+
T Consensus 22 ~~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~~mwVTF~dg~sALaals-~dg~~v~g~~l~ 100 (146)
T PF08952_consen 22 SQGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGDTMWVTFRDGQSALAALS-LDGIQVNGRTLK 100 (146)
T ss_dssp ----TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETTCEEEEESSCHHHHHHHH-GCCSEETTEEEE
T ss_pred hcCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCCeEEEEECccHHHHHHHc-cCCcEECCEEEE
Confidence 345666677766552 11 121 136788899999999999999999999999999999997 899999999999
Q ss_pred EEEeee
Q 014384 217 VEYAVR 222 (425)
Q Consensus 217 v~~a~~ 222 (425)
|....+
T Consensus 101 i~LKtp 106 (146)
T PF08952_consen 101 IRLKTP 106 (146)
T ss_dssp EEE---
T ss_pred EEeCCc
Confidence 987654
No 170
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.03 E-value=0.00035 Score=66.47 Aligned_cols=75 Identities=23% Similarity=0.446 Sum_probs=64.6
Q ss_pred CCCceEE-EcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEE
Q 014384 52 AMMRPIF-CGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 122 (425)
Q Consensus 52 ~~~~~l~-V~nL~~~~t~~~L~~lF~~~G~V~~v~i--------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V 122 (425)
....++| |+||+.++|.++|..+|..+|.|..|.+ .+|||||+|.+...+..|+.. +...+ .+.++.|
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~ 258 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSI--GGRPLRL 258 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcc--cCccccc
Confidence 3345565 9999999999999999999999999998 389999999999999999966 77777 6899999
Q ss_pred EEecccc
Q 014384 123 EWTKHER 129 (425)
Q Consensus 123 ~~a~~~~ 129 (425)
+......
T Consensus 259 ~~~~~~~ 265 (285)
T KOG4210|consen 259 EEDEPRP 265 (285)
T ss_pred ccCCCCc
Confidence 8876553
No 171
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.93 E-value=0.00069 Score=64.47 Aligned_cols=77 Identities=25% Similarity=0.254 Sum_probs=66.4
Q ss_pred CCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEE--------EE--------eccEEEEEEcCHHHHHHHHHHcCCCcc
Q 014384 147 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISV--------RI--------RRNFAFVQYEVQEDATRALDATNMSKL 210 (425)
Q Consensus 147 ~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v--------~~--------~~g~afV~f~~~~~A~~A~~~l~g~~~ 210 (425)
.....+|||-+| +..+++++|.++|.++|.|..- .| +|+-|.|.|.+...|+.|+..+++..|
T Consensus 63 ~s~~~ti~v~g~-~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 63 KSDNETIFVWGC-PDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred ccccccceeecc-CccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 455679999999 7888899999999999987432 11 278999999999999999999999999
Q ss_pred CCeEEEEEEeeeCC
Q 014384 211 TDRVISVEYAVRDD 224 (425)
Q Consensus 211 ~g~~i~v~~a~~~~ 224 (425)
.|..|+|.+|....
T Consensus 142 ~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 142 CGNTIKVSLAERRT 155 (351)
T ss_pred cCCCchhhhhhhcc
Confidence 99999999987764
No 172
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.88 E-value=0.0023 Score=64.17 Aligned_cols=69 Identities=23% Similarity=0.384 Sum_probs=55.5
Q ss_pred CcEEEEEcCCCCCCC------HHHHHhhhccCCcEEEEEEe-------ccEEEEEEcCHHHHHHHHHHcCCCccC-CeEE
Q 014384 150 SKTLFVINFDPYHTR------TRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLT-DRVI 215 (425)
Q Consensus 150 ~~~l~V~nl~p~~~~------~~~L~~~f~~~G~v~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~i 215 (425)
..+|+|.|+ |..-. ...|..+|+++|+|..+.++ +||.|++|.+..+|+.|++.|||..|+ +++.
T Consensus 58 D~vVvv~g~-PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 58 DSVVVVDGA-PVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred ceEEEECCC-cccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 467788887 54321 23466899999999999997 789999999999999999999999887 5666
Q ss_pred EEEE
Q 014384 216 SVEY 219 (425)
Q Consensus 216 ~v~~ 219 (425)
.|..
T Consensus 137 ~v~~ 140 (698)
T KOG2314|consen 137 FVRL 140 (698)
T ss_pred Eeeh
Confidence 6654
No 173
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.86 E-value=0.0025 Score=57.93 Aligned_cols=97 Identities=28% Similarity=0.317 Sum_probs=75.9
Q ss_pred HHHHHHHhcCCCeecCCCcEEEEEEeccccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEE
Q 014384 100 DAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKII 179 (425)
Q Consensus 100 ~A~~A~~~lng~~ig~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~ 179 (425)
-|..|..+|++... .++.|.|-|+.. ..|+|.|| ...++.+.|.+.|..||+|.
T Consensus 6 ~ae~ak~eLd~~~~--~~~~lr~rfa~~-----------------------a~l~V~nl-~~~~sndll~~~f~~fg~~e 59 (275)
T KOG0115|consen 6 LAEIAKRELDGRFP--KGRSLRVRFAMH-----------------------AELYVVNL-MQGASNDLLEQAFRRFGPIE 59 (275)
T ss_pred HHHHHHHhcCCCCC--CCCceEEEeecc-----------------------ceEEEEec-chhhhhHHHHHhhhhcCccc
Confidence 46777778999998 899999999864 46999999 67788999999999999876
Q ss_pred EEEE-------eccEEEEEEcCHHHHHHHHHHcCCCc----cCCeEEEEEEeee
Q 014384 180 SVRI-------RRNFAFVQYEVQEDATRALDATNMSK----LTDRVISVEYAVR 222 (425)
Q Consensus 180 ~v~~-------~~g~afV~f~~~~~A~~A~~~l~g~~----~~g~~i~v~~a~~ 222 (425)
...+ +.+-++|+|...-.|.+|+..+...- ..+.++.|+-...
T Consensus 60 ~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~eq 113 (275)
T KOG0115|consen 60 RAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPMEQ 113 (275)
T ss_pred hheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChhhc
Confidence 5444 25689999999999999998874433 3355565555443
No 174
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.86 E-value=0.00042 Score=62.99 Aligned_cols=57 Identities=26% Similarity=0.373 Sum_probs=49.3
Q ss_pred HHHHhhhc-cCCcEEEEEEe-------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeee
Q 014384 166 RDLERHFE-PYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 222 (425)
Q Consensus 166 ~~L~~~f~-~~G~v~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 222 (425)
++|...|+ +||+|+.+.+. .|.+||.|...++|++|++.||+..|.|++|..++..-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 44555555 99999999773 68999999999999999999999999999999999654
No 175
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.68 E-value=0.0017 Score=63.01 Aligned_cols=61 Identities=33% Similarity=0.481 Sum_probs=53.6
Q ss_pred CCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe---------------------ccEEEEEEcCHHHHHHHHHHc
Q 014384 147 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR---------------------RNFAFVQYEVQEDATRALDAT 205 (425)
Q Consensus 147 ~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~---------------------~g~afV~f~~~~~A~~A~~~l 205 (425)
..+..+|++.|| |..-..+.|.++|..+|.|+.|.|. +-+|+|+|...+.|.+|.+.|
T Consensus 228 el~srtivaenL-P~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 228 ELPSRTIVAENL-PLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred ccccceEEEecC-CcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 357899999999 7877789999999999999999983 238999999999999999988
Q ss_pred CCC
Q 014384 206 NMS 208 (425)
Q Consensus 206 ~g~ 208 (425)
+..
T Consensus 307 ~~e 309 (484)
T KOG1855|consen 307 NPE 309 (484)
T ss_pred chh
Confidence 653
No 176
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.66 E-value=0.0048 Score=57.11 Aligned_cols=74 Identities=19% Similarity=0.260 Sum_probs=56.4
Q ss_pred CCceEEEcCC--CCCCC---HHHHHHHHhhcCCeeEEEEe---------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCc
Q 014384 53 MMRPIFCGNF--EYDAR---QSDLERLFRRYGKVDRVDMK---------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGR 118 (425)
Q Consensus 53 ~~~~l~V~nL--~~~~t---~~~L~~lF~~~G~V~~v~i~---------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr 118 (425)
.++.|.+.|+ +-.+. ++++.+..++||+|..|.|. .--.||+|+..++|.+|+-.|||..| .|+
T Consensus 280 ptkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyF--GGr 357 (378)
T KOG1996|consen 280 PTKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYF--GGR 357 (378)
T ss_pred chHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCcee--cce
Confidence 3344555554 22333 45678889999999988883 23579999999999999999999999 599
Q ss_pred EEEEEEeccc
Q 014384 119 RLRVEWTKHE 128 (425)
Q Consensus 119 ~l~V~~a~~~ 128 (425)
.+...|.+..
T Consensus 358 ~v~A~Fyn~e 367 (378)
T KOG1996|consen 358 VVSACFYNLE 367 (378)
T ss_pred eeeheeccHH
Confidence 9988887644
No 177
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.64 E-value=0.007 Score=48.00 Aligned_cols=68 Identities=25% Similarity=0.437 Sum_probs=50.9
Q ss_pred CcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEE-------------Ee--ccEEEEEEcCHHHHHHHHHHcCCCccCCe-
Q 014384 150 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVR-------------IR--RNFAFVQYEVQEDATRALDATNMSKLTDR- 213 (425)
Q Consensus 150 ~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~-------------~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~- 213 (425)
...|.|.|+ |... ...|.++|++||.|.+.. ++ .+...|+|.++.+|.+||. .||..|.|.
T Consensus 6 ~~wVtVFGf-p~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 6 ETWVTVFGF-PPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp CCEEEEE----GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CeEEEEEcc-CHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 457889999 5554 778999999999998885 33 4588999999999999997 699999885
Q ss_pred EEEEEEe
Q 014384 214 VISVEYA 220 (425)
Q Consensus 214 ~i~v~~a 220 (425)
.+-|.+.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 4556665
No 178
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.60 E-value=0.002 Score=64.94 Aligned_cols=78 Identities=15% Similarity=0.259 Sum_probs=66.4
Q ss_pred CCCCCCcEEEEEcCCCCCCCHHHHHhhhc-cCCcEEEEEE--eccEEEEEEcCHHHHHHHHHHcCCCccC---CeEEEEE
Q 014384 145 TNTRPSKTLFVINFDPYHTRTRDLERHFE-PYGKIISVRI--RRNFAFVQYEVQEDATRALDATNMSKLT---DRVISVE 218 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~p~~~~~~~L~~~f~-~~G~v~~v~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~i~v~ 218 (425)
....+.+.|+|.|| -...|.-+|+.++. ..|.|..++| .+..|||.|.+.++|.+...+|||..+- ++.|.+.
T Consensus 439 sR~~~SnvlhI~nL-vRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ad 517 (718)
T KOG2416|consen 439 SRKEPSNVLHIDNL-VRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIAD 517 (718)
T ss_pred CCCCccceEeeecc-cccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEee
Confidence 35567799999999 68888999999998 6777887776 4789999999999999999999998763 6889999
Q ss_pred EeeeC
Q 014384 219 YAVRD 223 (425)
Q Consensus 219 ~a~~~ 223 (425)
|+...
T Consensus 518 f~~~d 522 (718)
T KOG2416|consen 518 FVRAD 522 (718)
T ss_pred ecchh
Confidence 97654
No 179
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.56 E-value=0.0047 Score=57.12 Aligned_cols=58 Identities=28% Similarity=0.294 Sum_probs=50.3
Q ss_pred HHHHHhhhccCCcEEEEEEe---------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeee
Q 014384 165 TRDLERHFEPYGKIISVRIR---------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 222 (425)
Q Consensus 165 ~~~L~~~f~~~G~v~~v~~~---------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 222 (425)
+++++..+++||+|..|.|. .--.||+|+..+.|.+|+-.|||..|+|+.+...|...
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 45677889999999988874 12689999999999999999999999999999888654
No 180
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.39 E-value=0.0021 Score=58.38 Aligned_cols=64 Identities=16% Similarity=0.273 Sum_probs=56.1
Q ss_pred CcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEec--------------------cEEEEEEcCHHHHHHHHHHcCCCc
Q 014384 150 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRR--------------------NFAFVQYEVQEDATRALDATNMSK 209 (425)
Q Consensus 150 ~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~~--------------------g~afV~f~~~~~A~~A~~~l~g~~ 209 (425)
...||+++| |..+...-|+++|.+||.|-.|.+.. .-|+|+|.+...|..+...||+..
T Consensus 74 ~GVvylS~I-Pp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 74 TGVVYLSNI-PPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred ceEEEeccC-CCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 468999999 66777999999999999999999941 158899999999999999999999
Q ss_pred cCCeE
Q 014384 210 LTDRV 214 (425)
Q Consensus 210 ~~g~~ 214 (425)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99864
No 181
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.31 E-value=0.0029 Score=62.21 Aligned_cols=60 Identities=22% Similarity=0.392 Sum_probs=52.4
Q ss_pred CCCHHHHHhhhccCCcEEEEEEe--ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeee
Q 014384 162 HTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 222 (425)
Q Consensus 162 ~~~~~~L~~~f~~~G~v~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 222 (425)
.-+-.+|..+|.+||.|..|.+. ...|.|+|.+..+|-.|.. .++..|+|+.|+|-|-+.
T Consensus 384 lnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 384 LNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred CchHhhhhhhhhhcCccccccccCchhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 34467899999999999999885 4689999999999988875 799999999999999776
No 182
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=96.30 E-value=0.0025 Score=65.22 Aligned_cols=73 Identities=18% Similarity=0.154 Sum_probs=63.6
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEe
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 125 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a 125 (425)
...+.-+|||+||...+..+-+..++..||-|..+..-+ |+|++|..+..+..|+..|+-..+ +|..|.+..-
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-fgf~~f~~~~~~~ra~r~~t~~~~--~~~kl~~~~d 108 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-FGFCEFLKHIGDLRASRLLTELNI--DDQKLIENVD 108 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-hcccchhhHHHHHHHHHHhcccCC--Ccchhhccch
Confidence 445667999999999999999999999999998776655 999999999999999998988888 7887777654
No 183
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.27 E-value=0.025 Score=40.48 Aligned_cols=54 Identities=17% Similarity=0.234 Sum_probs=44.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhc----CCeeEEEEeCCEEEEEEcCHHHHHHHHHhc
Q 014384 54 MRPIFCGNFEYDARQSDLERLFRRY----GKVDRVDMKSGFAFIYMDDERDAEDAIRGL 108 (425)
Q Consensus 54 ~~~l~V~nL~~~~t~~~L~~lF~~~----G~V~~v~i~kg~aFV~F~~~~~A~~A~~~l 108 (425)
...|+|.++ .+++.++|+.+|..| ++..-=+|.-..|=|.|.+.+.|..||.+|
T Consensus 5 peavhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdDtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDDTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecCCcEEEEECCHHHHHHHHHcC
Confidence 357899998 458899999999999 654434456778899999999999999765
No 184
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.88 E-value=0.0074 Score=57.12 Aligned_cols=71 Identities=14% Similarity=0.284 Sum_probs=58.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCC--eeEEEE--------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEE
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRYGK--VDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 121 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~G~--V~~v~i--------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~ 121 (425)
.....+|||||-+-+|+++|.+.+...|- |.++++ +||||+|...+...+++.|+.|-.+.| +|+.-.
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~i--HGQ~P~ 155 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTI--HGQSPT 155 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhccccee--cCCCCe
Confidence 33467999999999999999999888774 333443 499999999999999999999999999 787666
Q ss_pred EEE
Q 014384 122 VEW 124 (425)
Q Consensus 122 V~~ 124 (425)
|--
T Consensus 156 V~~ 158 (498)
T KOG4849|consen 156 VLS 158 (498)
T ss_pred eec
Confidence 643
No 185
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.65 E-value=0.056 Score=38.70 Aligned_cols=53 Identities=26% Similarity=0.326 Sum_probs=41.8
Q ss_pred cEEEEEcCCCCCCCHHHHHhhhccC----CcEEEEEEeccEEEEEEcCHHHHHHHHHHc
Q 014384 151 KTLFVINFDPYHTRTRDLERHFEPY----GKIISVRIRRNFAFVQYEVQEDATRALDAT 205 (425)
Q Consensus 151 ~~l~V~nl~p~~~~~~~L~~~f~~~----G~v~~v~~~~g~afV~f~~~~~A~~A~~~l 205 (425)
..|+|.|++ .++.++|+.+|..| ++..-=.|--.-|-|.|.+.+.|..|+.+|
T Consensus 6 eavhirGvd--~lsT~dI~~y~~~y~~~~~~~~IEWIdDtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD--ELSTDDIKAYFSEYFDEEGPFRIEWIDDTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC--CCCHHHHHHHHHHhcccCCCceEEEecCCcEEEEECCHHHHHHHHHcC
Confidence 579999994 56689999999998 544333444568889999999999999765
No 186
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.61 E-value=0.008 Score=59.25 Aligned_cols=74 Identities=15% Similarity=0.322 Sum_probs=62.0
Q ss_pred CCceEEEcCCCCCC-CHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEecccc
Q 014384 53 MMRPIFCGNFEYDA-RQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 129 (425)
Q Consensus 53 ~~~~l~V~nL~~~~-t~~~L~~lF~~~G~V~~v~i~--kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~~ 129 (425)
+.+.|.+.-++..+ |.++|...|.+||+|..|.+. .-.|.|+|.+..+|-.|. ...+..| +++.|+|.|.+...
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~-~s~~avl--nnr~iKl~whnps~ 447 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAY-ASHGAVL--NNRFIKLFWHNPSP 447 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchhhheeeeeccccccchh-cccccee--cCceeEEEEecCCc
Confidence 34556666666655 468999999999999999884 568999999999998887 7899999 99999999998754
No 187
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.51 E-value=0.034 Score=55.94 Aligned_cols=69 Identities=16% Similarity=0.225 Sum_probs=54.6
Q ss_pred CcEEEEEcCCCCCCCHHHHHhhhcc--CCcEEEEEEe-ccEEEEEEcCHHHHHHHHHHcCC--CccCCeEEEEEE
Q 014384 150 SKTLFVINFDPYHTRTRDLERHFEP--YGKIISVRIR-RNFAFVQYEVQEDATRALDATNM--SKLTDRVISVEY 219 (425)
Q Consensus 150 ~~~l~V~nl~p~~~~~~~L~~~f~~--~G~v~~v~~~-~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~i~v~~ 219 (425)
.+.|.|.-| +..+..++|+.||.. |-++..|.+. ..-=||+|++..||+.|.+.|.. ++|.|+.|...+
T Consensus 175 RcIvilREI-pettp~e~Vk~lf~~encPk~iscefa~N~nWyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 175 RCIVILREI-PETTPIEVVKALFKGENCPKVISCEFAHNDNWYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred eeEEEEeec-CCCChHHHHHHHhccCCCCCceeeeeeecCceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 456677888 899999999999975 7789999886 56778999999999999877644 456666655444
No 188
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.24 E-value=0.1 Score=38.95 Aligned_cols=59 Identities=24% Similarity=0.438 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHhhcC-----CeeEEEEeCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEe
Q 014384 64 YDARQSDLERLFRRYG-----KVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 125 (425)
Q Consensus 64 ~~~t~~~L~~lF~~~G-----~V~~v~i~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a 125 (425)
..++..+|..+|...+ .|-.|.|...|+||+-... .|..++..|++..+ .|+.|.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~~S~vev~~~-~a~~v~~~l~~~~~--~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDNFSFVEVPEE-VAEKVLEALNGKKI--KGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-EEEEE-TT--HHHHHHHHTT--S--SS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeeeEEEEEECHH-HHHHHHHHhcCCCC--CCeeEEEEEC
Confidence 5688899999998764 4668889999999998765 78889999999999 8999999875
No 189
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.16 E-value=0.015 Score=61.20 Aligned_cols=75 Identities=21% Similarity=0.180 Sum_probs=64.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEecccc
Q 014384 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 129 (425)
Q Consensus 55 ~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~~ 129 (425)
.+.++.|.+-.+|..-|..||..||.|..++.- -..|.|+|...+.|..|+.+|+|+++...|-+.+|.+|+...
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 445556666678888999999999999999983 578999999999999999999999887679999999998655
No 190
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.02 E-value=0.13 Score=38.93 Aligned_cols=55 Identities=24% Similarity=0.438 Sum_probs=44.5
Q ss_pred cEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEeccEEEEEEcCHHHHHHHHHHcCC
Q 014384 151 KTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNM 207 (425)
Q Consensus 151 ~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~~g~afV~f~~~~~A~~A~~~l~g 207 (425)
+..+|. + |......||.++|..||.|.--.|.-.-|||...+.+.|..|+..+.-
T Consensus 10 HVFhlt-F-PkeWK~~DI~qlFspfG~I~VsWi~dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-F-PKEWKTSDIYQLFSPFGQIYVSWINDTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE----TT--HHHHHHHCCCCCCEEEEEECTTEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-C-chHhhhhhHHHHhccCCcEEEEEEcCCcEEEEeecHHHHHHHHHHhcc
Confidence 344454 8 677778999999999999999999999999999999999999988763
No 191
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.85 E-value=0.17 Score=42.17 Aligned_cols=75 Identities=21% Similarity=0.279 Sum_probs=55.5
Q ss_pred CCCCCcEEEEEcCCCCCCCHHHH---HhhhccCCcEEEEEEe-ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEee
Q 014384 146 NTRPSKTLFVINFDPYHTRTRDL---ERHFEPYGKIISVRIR-RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221 (425)
Q Consensus 146 ~~~~~~~l~V~nl~p~~~~~~~L---~~~f~~~G~v~~v~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 221 (425)
..+|-.+|.|.=|.......+|| .+.+..||+|..|.+. +..|.|.|.+...|.+|+.+++. ..-|..+.+.|..
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWqq 160 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQQ 160 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeeccc
Confidence 35666788886653233334454 4566789999999986 77999999999999999999876 5566777776643
No 192
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.70 E-value=0.098 Score=46.43 Aligned_cols=61 Identities=25% Similarity=0.316 Sum_probs=45.0
Q ss_pred CHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcCHHHHHHHHHhcC--CCeecCCCcEEEEEEecccc
Q 014384 67 RQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGLD--RTEFGRKGRRLRVEWTKHER 129 (425)
Q Consensus 67 t~~~L~~lF~~~G~V~~v~i~--kg~aFV~F~~~~~A~~A~~~ln--g~~ig~~gr~l~V~~a~~~~ 129 (425)
..+.|+++|..|+.+..+.+- -+=..|.|.+.+.|..|...|+ +..| .|..|+|.|+....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~--~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSF--NGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEE--TTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhccccccc--CCCceEEEEccccc
Confidence 358899999999988776663 4567899999999999999999 8999 89999999985443
No 193
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.70 E-value=0.031 Score=49.40 Aligned_cols=77 Identities=9% Similarity=0.015 Sum_probs=50.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhh-cCCe---eEEEE----------eCCEEEEEEcCHHHHHHHHHhcCCCeecC--
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRR-YGKV---DRVDM----------KSGFAFIYMDDERDAEDAIRGLDRTEFGR-- 115 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~-~G~V---~~v~i----------~kg~aFV~F~~~~~A~~A~~~lng~~ig~-- 115 (425)
.....|.|.+||+++|++++.+.+.. ++.. ..+.- .-.-|||.|.+.+++...+..++|..|-.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34569999999999999999997776 5554 23331 13579999999999999999999987730
Q ss_pred -CCcEEEEEEeccc
Q 014384 116 -KGRRLRVEWTKHE 128 (425)
Q Consensus 116 -~gr~l~V~~a~~~ 128 (425)
.--...|++|...
T Consensus 85 g~~~~~~VE~Apyq 98 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQ 98 (176)
T ss_dssp S-EEEEEEEE-SS-
T ss_pred CCCcceeEEEcchh
Confidence 1235567777653
No 194
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.61 E-value=0.15 Score=38.13 Aligned_cols=59 Identities=27% Similarity=0.291 Sum_probs=38.1
Q ss_pred CCCCHHHHHhhhccCC-----cEEEEEEeccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEe
Q 014384 161 YHTRTRDLERHFEPYG-----KIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220 (425)
Q Consensus 161 ~~~~~~~L~~~f~~~G-----~v~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 220 (425)
..++..+|..++...+ .|-.|.+...|+||+-... .|..++..|++..+.|+.|.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeeeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4566788888777654 5789999999999998765 788999999999999999999875
No 195
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=94.56 E-value=0.032 Score=52.95 Aligned_cols=70 Identities=11% Similarity=0.233 Sum_probs=54.4
Q ss_pred CCcEEEEEcCCCCCCCHHHHHhhhccCC--cEEEEEE--------eccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEE
Q 014384 149 PSKTLFVINFDPYHTRTRDLERHFEPYG--KIISVRI--------RRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218 (425)
Q Consensus 149 ~~~~l~V~nl~p~~~~~~~L~~~f~~~G--~v~~v~~--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 218 (425)
...++||+|| .+++|+++|.+.+...| .+.++++ .+|||+|...+....++.++.|...+|.|..-.|-
T Consensus 79 rk~~~YvGNL-~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 79 RKYCCYVGNL-LWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred ceEEEEecce-eEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 3468999999 67777888887776665 3444444 27899999999999999999999999998765554
Q ss_pred E
Q 014384 219 Y 219 (425)
Q Consensus 219 ~ 219 (425)
-
T Consensus 158 ~ 158 (498)
T KOG4849|consen 158 S 158 (498)
T ss_pred c
Confidence 3
No 196
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.26 E-value=0.015 Score=55.29 Aligned_cols=71 Identities=20% Similarity=0.377 Sum_probs=57.4
Q ss_pred ceEEEcCCCCCCCHHHHH---HHHhhcCCeeEEEEeC-----------CEEEEEEcCHHHHHHHHHhcCCCeecCCCcEE
Q 014384 55 RPIFCGNFEYDARQSDLE---RLFRRYGKVDRVDMKS-----------GFAFIYMDDERDAEDAIRGLDRTEFGRKGRRL 120 (425)
Q Consensus 55 ~~l~V~nL~~~~t~~~L~---~lF~~~G~V~~v~i~k-----------g~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l 120 (425)
.-+||-+|+..+..+.+. +.|.+||.|..|.+.+ .-+||.|+..++|..||...+|+.+ +|+.|
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~--dg~~l 155 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVD--DGRAL 155 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHh--hhhhh
Confidence 557888898877655443 5899999999998842 3589999999999999999999999 89987
Q ss_pred EEEEecc
Q 014384 121 RVEWTKH 127 (425)
Q Consensus 121 ~V~~a~~ 127 (425)
+..+...
T Consensus 156 ka~~gtt 162 (327)
T KOG2068|consen 156 KASLGTT 162 (327)
T ss_pred HHhhCCC
Confidence 7776543
No 197
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=93.92 E-value=0.061 Score=52.41 Aligned_cols=72 Identities=22% Similarity=0.280 Sum_probs=59.8
Q ss_pred cEEEEEcCCCCCCCHHHHHhhhcc--CCcEEEEEEeccEEEEEEcCHHHHHHHHHHcCCC-ccCCeEEEEEEeeeC
Q 014384 151 KTLFVINFDPYHTRTRDLERHFEP--YGKIISVRIRRNFAFVQYEVQEDATRALDATNMS-KLTDRVISVEYAVRD 223 (425)
Q Consensus 151 ~~l~V~nl~p~~~~~~~L~~~f~~--~G~v~~v~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~i~v~~a~~~ 223 (425)
+.||++|| ...++..+|..+|.. .+.-..+-+..||+||.+.+..-|.+|++.++|. ++.|..+.+++...+
T Consensus 2 nklyignL-~p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNL-SPQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred Cccccccc-CCCCChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 46899999 456669999999974 3444556667899999999999999999999985 578999999997665
No 198
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.81 E-value=0.09 Score=53.03 Aligned_cols=56 Identities=16% Similarity=0.186 Sum_probs=47.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhh--cCCeeEEEEe-CCEEEEEEcCHHHHHHHHHhcC
Q 014384 54 MRPIFCGNFEYDARQSDLERLFRR--YGKVDRVDMK-SGFAFIYMDDERDAEDAIRGLD 109 (425)
Q Consensus 54 ~~~l~V~nL~~~~t~~~L~~lF~~--~G~V~~v~i~-kg~aFV~F~~~~~A~~A~~~ln 109 (425)
-+.|.|.-||.++.+++|+.||.. |-++.+|.+- ..-=||.|++..||.+|...|.
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~nWyITfesd~DAQqAykylr 233 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDNWYITFESDTDAQQAYKYLR 233 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCceEEEeecchhHHHHHHHHH
Confidence 367888899999999999999985 7788888873 5567999999999999987554
No 199
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.72 E-value=0.29 Score=39.59 Aligned_cols=60 Identities=10% Similarity=0.108 Sum_probs=43.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEe------CCEEEEEEcCHHHHHHHHHhcCCCee
Q 014384 54 MRPIFCGNFEYDARQSDLERLFRRYG-KVDRVDMK------SGFAFIYMDDERDAEDAIRGLDRTEF 113 (425)
Q Consensus 54 ~~~l~V~nL~~~~t~~~L~~lF~~~G-~V~~v~i~------kg~aFV~F~~~~~A~~A~~~lng~~i 113 (425)
...+.+...|.-++.++|..+...+- .|..+.|- +-.+.|.|.+.++|......+||+.|
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPF 79 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCcc
Confidence 34444445555556667766666654 45666662 45889999999999999999999988
No 200
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=93.37 E-value=0.068 Score=48.88 Aligned_cols=70 Identities=26% Similarity=0.385 Sum_probs=55.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE-------eCCEEEEEEcCHHHHHHHHHhcCCCeec--CCCcEEEEEE
Q 014384 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDM-------KSGFAFIYMDDERDAEDAIRGLDRTEFG--RKGRRLRVEW 124 (425)
Q Consensus 55 ~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i-------~kg~aFV~F~~~~~A~~A~~~lng~~ig--~~gr~l~V~~ 124 (425)
..|||.||..-+..+.|.+-|..||.|..-.+ ..+-++|+|...-.|.+|+..++..-|+ ..+.+..|+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 78999999999999999999999999875443 3688999999999999999877433221 2455655654
No 201
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.23 E-value=0.42 Score=44.85 Aligned_cols=73 Identities=16% Similarity=0.102 Sum_probs=54.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEecccc
Q 014384 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 129 (425)
Q Consensus 54 ~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~~ 129 (425)
..=|.|-++++..+ .-|..+|.+||+|...... -.+-+|.|...-+|.+|| ..||+.|. ..-.|-|..+..+.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KAL-skng~ii~-g~vmiGVkpCtDks 271 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKAL-SKNGTIID-GDVMIGVKPCTDKS 271 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhh-hhcCeeec-cceEEeeeecCCHH
Confidence 45577778877554 5677899999999887774 458899999999999999 88999993 33344455544443
No 202
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.06 E-value=0.032 Score=53.01 Aligned_cols=74 Identities=22% Similarity=0.355 Sum_probs=58.5
Q ss_pred CcEEEEEcCCCCCCCHHHHH--hhhccCCcEEEEEEecc-----------EEEEEEcCHHHHHHHHHHcCCCccCCeEEE
Q 014384 150 SKTLFVINFDPYHTRTRDLE--RHFEPYGKIISVRIRRN-----------FAFVQYEVQEDATRALDATNMSKLTDRVIS 216 (425)
Q Consensus 150 ~~~l~V~nl~p~~~~~~~L~--~~f~~~G~v~~v~~~~g-----------~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 216 (425)
.+-+||-+|++....+..|+ ..|.+||.|..|.+.++ -++|+|...++|..||...+|..++|+.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 34567778855555555665 56899999999988542 589999999999999999999999999987
Q ss_pred EEEeeeC
Q 014384 217 VEYAVRD 223 (425)
Q Consensus 217 v~~a~~~ 223 (425)
..+...+
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 7775554
No 203
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=92.53 E-value=4.5 Score=38.09 Aligned_cols=155 Identities=14% Similarity=0.162 Sum_probs=97.3
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe---------------CCEEEEEEcCHHHHHHHHH----hcCC
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK---------------SGFAFIYMDDERDAEDAIR----GLDR 110 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~---------------kg~aFV~F~~~~~A~~A~~----~lng 110 (425)
..-.++.|.+.||...++--.+...|-+||+|+.|.|- ...+.+-|-+.+.|-.+.. .|+.
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 45567899999999999999999999999999999992 3578899999998876542 2322
Q ss_pred --CeecCCCcEEEEEEeccccCCCC--CCCCC--------CCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHh---hhccC
Q 014384 111 --TEFGRKGRRLRVEWTKHERGIRR--PGGGS--------SARRPSTNTRPSKTLFVINFDPYHTRTRDLER---HFEPY 175 (425)
Q Consensus 111 --~~ig~~gr~l~V~~a~~~~~~~~--~~~~~--------~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~---~f~~~ 175 (425)
+.+ +-..|.|.|..-.-.... +.... .....-........|.|.=-+ ....++-|.+ ++..-
T Consensus 91 fK~~L--~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~~-~~~~~dl~~~kL~fL~~~ 167 (309)
T PF10567_consen 91 FKTKL--KSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFKD-PVDKDDLIEKKLPFLKNS 167 (309)
T ss_pred HHHhc--CCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEecC-ccchhHHHHHhhhhhccC
Confidence 233 677778877653211100 11000 001112233445566665432 2222332332 22233
Q ss_pred Cc----EEEEEEe----------ccEEEEEEcCHHHHHHHHHHcCC
Q 014384 176 GK----IISVRIR----------RNFAFVQYEVQEDATRALDATNM 207 (425)
Q Consensus 176 G~----v~~v~~~----------~g~afV~f~~~~~A~~A~~~l~g 207 (425)
+. ++.|.+. ++||.+.|-+...|.+.++.|..
T Consensus 168 ~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~ 213 (309)
T PF10567_consen 168 NNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKS 213 (309)
T ss_pred CCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHh
Confidence 32 4556653 67999999999999999887763
No 204
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.50 E-value=0.091 Score=54.18 Aligned_cols=76 Identities=17% Similarity=0.175 Sum_probs=65.3
Q ss_pred CCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEeccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEE
Q 014384 142 RPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 219 (425)
Q Consensus 142 ~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 219 (425)
+...+.++..++||+|+ .+.+.++-++.+...+|.|..+...+ |+|++|..+..+..|+..|+...++|..+.+..
T Consensus 32 p~~~~~~~~~~vfv~~~-~~~~s~~~~~~il~~~g~v~s~kr~~-fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 32 PVFQPLPPRDTVFVGNI-SYLVSQEFWKSILAKSGFVPSWKRDK-FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred ccccCCCCCceeEecch-hhhhhHHHHHHHHhhCCcchhhhhhh-hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 33456677889999999 78888888999999999998887766 999999999999999999999999888776655
No 205
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.46 E-value=0.56 Score=46.46 Aligned_cols=63 Identities=13% Similarity=0.174 Sum_probs=53.9
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEe------CCEEEEEEcCHHHHHHHHHhcCCCee
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYG-KVDRVDMK------SGFAFIYMDDERDAEDAIRGLDRTEF 113 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G-~V~~v~i~------kg~aFV~F~~~~~A~~A~~~lng~~i 113 (425)
+...+.|+|-.+|..+|..||..|...|- .|..|.|- +-.+.|.|.+.++|..+...+||+.|
T Consensus 71 ~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~F 140 (493)
T KOG0804|consen 71 ASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQF 140 (493)
T ss_pred CCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcC
Confidence 33478999999999999999999988764 46777772 45789999999999999999999988
No 206
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.30 E-value=0.38 Score=45.13 Aligned_cols=67 Identities=21% Similarity=0.319 Sum_probs=52.2
Q ss_pred CcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEec--cEEEEEEcCHHHHHHHHHHcCCCccCCeE-EEEEE
Q 014384 150 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRR--NFAFVQYEVQEDATRALDATNMSKLTDRV-ISVEY 219 (425)
Q Consensus 150 ~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~~--g~afV~f~~~~~A~~A~~~l~g~~~~g~~-i~v~~ 219 (425)
..-|-|.++.|.. ..-|..+|++||.|++..... ++.+|.|.+..+|.+||. .||+.|+|.. |-|.-
T Consensus 197 D~WVTVfGFppg~--~s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ--VSIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKP 266 (350)
T ss_pred cceEEEeccCccc--hhHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeee
Confidence 4567788884443 467889999999999887763 488999999999999997 5888888754 44443
No 207
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.30 E-value=0.56 Score=34.09 Aligned_cols=56 Identities=13% Similarity=0.192 Sum_probs=44.6
Q ss_pred CCCCHHHHHhhhccCCcEEEEEEeccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEE
Q 014384 161 YHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217 (425)
Q Consensus 161 ~~~~~~~L~~~f~~~G~v~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 217 (425)
..++-++|+..+..|+... |..-+.--||.|.+..+|.++....+|+.+.+..|.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~~~-I~~d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRWDR-IRDDRTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCcce-EEecCCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4567899999999997644 3344444579999999999999999999888777654
No 208
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.16 E-value=0.29 Score=43.50 Aligned_cols=58 Identities=19% Similarity=0.243 Sum_probs=45.6
Q ss_pred HHHHHhhhccCCcEEEEEEecc--EEEEEEcCHHHHHHHHHHcC--CCccCCeEEEEEEeee
Q 014384 165 TRDLERHFEPYGKIISVRIRRN--FAFVQYEVQEDATRALDATN--MSKLTDRVISVEYAVR 222 (425)
Q Consensus 165 ~~~L~~~f~~~G~v~~v~~~~g--~afV~f~~~~~A~~A~~~l~--g~~~~g~~i~v~~a~~ 222 (425)
.+.|+++|..|+.+..+.+.+. -..|.|.+.++|..|...|+ +..|.|..|.|-|+..
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred HHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 5789999999999888888765 57899999999999999999 9999999999999854
No 209
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=92.13 E-value=3.5 Score=33.31 Aligned_cols=70 Identities=23% Similarity=0.333 Sum_probs=49.8
Q ss_pred cEEEEEcCCCCCCCHHHHHhhhccCC-cEEEEEEecc------EEEEEEcCHHHHHHHHHHcCCCccCC---eEEEEEEe
Q 014384 151 KTLFVINFDPYHTRTRDLERHFEPYG-KIISVRIRRN------FAFVQYEVQEDATRALDATNMSKLTD---RVISVEYA 220 (425)
Q Consensus 151 ~~l~V~nl~p~~~~~~~L~~~f~~~G-~v~~v~~~~g------~afV~f~~~~~A~~A~~~l~g~~~~g---~~i~v~~a 220 (425)
..|.|-...|..++.++|..+...+- .|..++|.+. .+.|+|.++++|.+-...+||+.|.- ..++|-|.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~ChvvfV 92 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVVFV 92 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEEEE
Confidence 34444444378887888877777665 5667777532 67799999999999999999998874 34544443
No 210
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.72 E-value=0.93 Score=32.96 Aligned_cols=56 Identities=25% Similarity=0.388 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEE
Q 014384 64 YDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 122 (425)
Q Consensus 64 ~~~t~~~L~~lF~~~G~V~~v~i~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V 122 (425)
..++.++|+..+..|+- ..|...+.=-||.|.+.++|+.+....+|..+ .+-.|.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~-~~I~~d~tGfYIvF~~~~Ea~rC~~~~~~~~~--f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRW-DRIRDDRTGFYIVFNDSKEAERCFRAEDGTLF--FTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCc-ceEEecCCEEEEEECChHHHHHHHHhcCCCEE--EEEEEEe
Confidence 35788999999999984 45556544458999999999999999999988 4555543
No 211
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=91.08 E-value=0.45 Score=36.72 Aligned_cols=74 Identities=16% Similarity=0.204 Sum_probs=46.9
Q ss_pred EEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEeccccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHh
Q 014384 91 AFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLER 170 (425)
Q Consensus 91 aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~ 170 (425)
|+|.|.++.-|...+. +....+.+++..+.|........... ...........+|.|.|| |....+++|++
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~v~P~~~~~~~-------k~qv~~~vs~rtVlvsgi-p~~l~ee~l~D 71 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVKVSPVTLGHLQ-------KFQVFSGVSKRTVLVSGI-PDVLDEEELRD 71 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEEEEeEecCCce-------EEEEEEcccCCEEEEeCC-CCCCChhhhee
Confidence 7899999999999884 33333333566666654433221100 000112345678999999 78888999988
Q ss_pred hhc
Q 014384 171 HFE 173 (425)
Q Consensus 171 ~f~ 173 (425)
.++
T Consensus 72 ~Le 74 (88)
T PF07292_consen 72 KLE 74 (88)
T ss_pred eEE
Confidence 765
No 212
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.60 E-value=1 Score=46.01 Aligned_cols=77 Identities=22% Similarity=0.354 Sum_probs=62.7
Q ss_pred CCCCCcEEEEEcCCCCCCCHHHHHhhhccC----CcEEEEEEe----------------c--------------------
Q 014384 146 NTRPSKTLFVINFDPYHTRTRDLERHFEPY----GKIISVRIR----------------R-------------------- 185 (425)
Q Consensus 146 ~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~----G~v~~v~~~----------------~-------------------- 185 (425)
...+++.|-|.||++..+...+|..+|.-| |.|..|.|- .
T Consensus 170 ~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 170 LGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred cccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhh
Confidence 356778999999999999999999988754 478888871 0
Q ss_pred -----------------c--EEEEEEcCHHHHHHHHHHcCCCccC--CeEEEEEEeee
Q 014384 186 -----------------N--FAFVQYEVQEDATRALDATNMSKLT--DRVISVEYAVR 222 (425)
Q Consensus 186 -----------------g--~afV~f~~~~~A~~A~~~l~g~~~~--g~~i~v~~a~~ 222 (425)
+ ||.|+|.+.+.|....+.++|.+|. +..|-+.|...
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPD 307 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPD 307 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCC
Confidence 1 8999999999999999999999998 45566666444
No 213
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.60 E-value=1.7 Score=44.50 Aligned_cols=77 Identities=19% Similarity=0.329 Sum_probs=62.7
Q ss_pred hcCCCceEEEcCCCCC-CCHHHHHHHHhhc----CCeeEEEEe-------------------------------------
Q 014384 50 FEAMMRPIFCGNFEYD-ARQSDLERLFRRY----GKVDRVDMK------------------------------------- 87 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~-~t~~~L~~lF~~~----G~V~~v~i~------------------------------------- 87 (425)
....++.|-|.||.|+ |...+|.-+|+.| |.|..|.|.
T Consensus 170 ~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 170 LGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred cccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhh
Confidence 3566789999999984 6789999999987 689888871
Q ss_pred ------------------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEec
Q 014384 88 ------------------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 126 (425)
Q Consensus 88 ------------------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~ 126 (425)
--||.|+|.+.+.|.+....|+|..|+.-+..|-+-|-.
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 028999999999999999999999996556666666543
No 214
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=88.02 E-value=0.34 Score=41.38 Aligned_cols=107 Identities=14% Similarity=0.080 Sum_probs=68.8
Q ss_pred CCCHHHHHHHHhh----cCCeeEEEEeCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEeccccCCCCCCCCCCC
Q 014384 65 DARQSDLERLFRR----YGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSA 140 (425)
Q Consensus 65 ~~t~~~L~~lF~~----~G~V~~v~i~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~~~~~~~~~~~~~ 140 (425)
.++-..|.+.+.+ .|.+.-..+..++..++|.+.+++..++. .....| ++..|.++.-.+......
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l~~~~fl~~F~~~~d~~~vl~-~~p~~~--~~~~~~l~~W~~~~~~~~------- 97 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDLGDNLFLFQFESEEDRQRVLK-GGPWNF--NGHFLILQRWSPDFNPSE------- 97 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEeCCCeEEEEEEeccceeEEEe-cccccc--cccchhhhhhcccccccc-------
Confidence 3555555555544 45666666779999999999999998883 333344 566666654432210000
Q ss_pred CCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe
Q 014384 141 RRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR 184 (425)
Q Consensus 141 ~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~ 184 (425)
........-|.|.||+....+++.|+.+.+.+|.+..+...
T Consensus 98 ---~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 98 ---VKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred ---cceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcC
Confidence 00111223456789955567788899999999999998774
No 215
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=86.90 E-value=0.59 Score=43.28 Aligned_cols=101 Identities=17% Similarity=0.244 Sum_probs=54.6
Q ss_pred EEEEe-CCEEEEEEcCHHH----HHHHHHhcCCCeecC--CCcEEEEEEeccccCCCCCCC------CCCCCCCCCCCCC
Q 014384 83 RVDMK-SGFAFIYMDDERD----AEDAIRGLDRTEFGR--KGRRLRVEWTKHERGIRRPGG------GSSARRPSTNTRP 149 (425)
Q Consensus 83 ~v~i~-kg~aFV~F~~~~~----A~~A~~~lng~~ig~--~gr~l~V~~a~~~~~~~~~~~------~~~~~~~~~~~~~ 149 (425)
.|.|. ..+-||.|+-.-. .+..+.+|+|..|.+ ..-+|+|.-+..+........ .........+..-
T Consensus 69 sckiresnid~iifeael~n~gimkk~l~~ldgfsiklsgfad~lkvka~eakidfpsrhdwdd~fm~~kdmdemkpger 148 (445)
T KOG2891|consen 69 SCKIRESNIDFIIFEAELENKGIMKKFLACLDGFSIKLSGFADILKVKAAEAKIDFPSRHDWDDFFMDAKDMDEMKPGER 148 (445)
T ss_pred ceeecccccceEEeeHhhhhhhHHHHHHHHhcCCeeeecccchHHhhhHHhhcCCCCcccchHHHHhhhhhhhccCCCCC
Confidence 44553 5688898875433 556777888876622 223444433322211100000 0000011123333
Q ss_pred CcEEEEEcCCC------------CCCCHHHHHhhhccCCcEEEEEEe
Q 014384 150 SKTLFVINFDP------------YHTRTRDLERHFEPYGKIISVRIR 184 (425)
Q Consensus 150 ~~~l~V~nl~p------------~~~~~~~L~~~f~~~G~v~~v~~~ 184 (425)
..||++.+| | ...+++-|...|+.||.|..|.|+
T Consensus 149 pdti~la~i-p~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 149 PDTIHLAGI-PCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCceeecCC-cceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 456777666 3 224577899999999999999985
No 216
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=86.59 E-value=0.39 Score=50.99 Aligned_cols=62 Identities=24% Similarity=0.296 Sum_probs=53.1
Q ss_pred CCCHHHHHhhhccCCcEEEEEEecc--EEEEEEcCHHHHHHHHHHcCCCccC--CeEEEEEEeeeC
Q 014384 162 HTRTRDLERHFEPYGKIISVRIRRN--FAFVQYEVQEDATRALDATNMSKLT--DRVISVEYAVRD 223 (425)
Q Consensus 162 ~~~~~~L~~~f~~~G~v~~v~~~~g--~afV~f~~~~~A~~A~~~l~g~~~~--g~~i~v~~a~~~ 223 (425)
..+-..|..+|.+||.|..++..++ .|.|+|...+.|..|+++|+|+++- |-+.+|.+|+.-
T Consensus 309 ~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 309 NLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred cchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 3344568889999999999999654 8999999999999999999998754 888999998774
No 217
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=85.66 E-value=2 Score=37.98 Aligned_cols=73 Identities=14% Similarity=0.156 Sum_probs=49.7
Q ss_pred CCcEEEEEcCCCCCCCHHHHHhhhcc-CCcE---EEEEE--e--------ccEEEEEEcCHHHHHHHHHHcCCCccCC--
Q 014384 149 PSKTLFVINFDPYHTRTRDLERHFEP-YGKI---ISVRI--R--------RNFAFVQYEVQEDATRALDATNMSKLTD-- 212 (425)
Q Consensus 149 ~~~~l~V~nl~p~~~~~~~L~~~f~~-~G~v---~~v~~--~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g-- 212 (425)
....|.|.+| |-.+|++++.+.+.. ++.. ..+.- . -.-|||.|.+.+++..-...++|..|-+
T Consensus 6 ~~~KvVIR~L-PP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 6 EGTKVVIRRL-PPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ---EEEEEEE--TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred cCceEEEeCC-CCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 3468999999 777889999998877 6655 33431 1 2379999999999999999999976643
Q ss_pred ---eEEEEEEeee
Q 014384 213 ---RVISVEYAVR 222 (425)
Q Consensus 213 ---~~i~v~~a~~ 222 (425)
....|++|.-
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 3566777655
No 218
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=83.62 E-value=3.6 Score=40.96 Aligned_cols=62 Identities=23% Similarity=0.379 Sum_probs=52.8
Q ss_pred CcEEEEEcCCCCCCCHHHHHhhhccCC-cEEEEEEecc------EEEEEEcCHHHHHHHHHHcCCCccCC
Q 014384 150 SKTLFVINFDPYHTRTRDLERHFEPYG-KIISVRIRRN------FAFVQYEVQEDATRALDATNMSKLTD 212 (425)
Q Consensus 150 ~~~l~V~nl~p~~~~~~~L~~~f~~~G-~v~~v~~~~g------~afV~f~~~~~A~~A~~~l~g~~~~g 212 (425)
...|+|-.+ |..++..||..|+..|- .|..|.+.+. .++|+|.+.++|..-.+.+||..|..
T Consensus 74 ~~mLcilaV-P~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAV-PAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEec-cccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 788999999 88888999999887654 6778887532 67799999999999999999999884
No 219
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=80.76 E-value=29 Score=37.15 Aligned_cols=61 Identities=7% Similarity=0.096 Sum_probs=47.8
Q ss_pred CCCCHHHHHhhhccCC-----cEEEEEEeccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeee
Q 014384 161 YHTRTRDLERHFEPYG-----KIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 222 (425)
Q Consensus 161 ~~~~~~~L~~~f~~~G-----~v~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 222 (425)
..++..+|..++..-+ .|-.|.|...|.||+... ..|...+..|++..+.|+.|.|+.+..
T Consensus 497 ~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (629)
T PRK11634 497 DGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLGD 562 (629)
T ss_pred cCCCHHHHHHHHHhhcCCChhhCCcEEEeCCceEEEcCh-hhHHHHHHHhccccccCCceEEEECCC
Confidence 4666777777766554 356778889999999765 457888889999999999999998753
No 220
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=77.58 E-value=2.7 Score=36.74 Aligned_cols=74 Identities=19% Similarity=0.279 Sum_probs=53.0
Q ss_pred CCceEEEcCCCCCCC-----HHHHHHHHhhcCCeeEEEE--eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCc-EEEEEE
Q 014384 53 MMRPIFCGNFEYDAR-----QSDLERLFRRYGKVDRVDM--KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGR-RLRVEW 124 (425)
Q Consensus 53 ~~~~l~V~nL~~~~t-----~~~L~~lF~~~G~V~~v~i--~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr-~l~V~~ 124 (425)
-.+++.+.+|...+- ......||.+|-+..-+.+ ..+..-|.|.+++.|..|...+++..| .|+ .++..|
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f--~~~~~~k~yf 86 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSF--NGKNELKLYF 86 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhccc--CCCceEEEEE
Confidence 345677888876542 2234566666665554444 456677899999999999999999999 666 888888
Q ss_pred eccc
Q 014384 125 TKHE 128 (425)
Q Consensus 125 a~~~ 128 (425)
+...
T Consensus 87 aQ~~ 90 (193)
T KOG4019|consen 87 AQPG 90 (193)
T ss_pred ccCC
Confidence 7654
No 221
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=76.67 E-value=3.4 Score=38.58 Aligned_cols=51 Identities=18% Similarity=0.196 Sum_probs=40.6
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCe-eEEEE--eCCEEEEEEcCHHH
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKV-DRVDM--KSGFAFIYMDDERD 100 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V-~~v~i--~kg~aFV~F~~~~~ 100 (425)
+....+-|+|+||+.++...+|+..+.+.|.+ ..|.+ +.|-||+.|.+...
T Consensus 326 ~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 326 EAGAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNRKG 379 (396)
T ss_pred cCccccceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCccC
Confidence 34445679999999999999999999998754 45555 48899999987543
No 222
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=76.15 E-value=12 Score=36.00 Aligned_cols=17 Identities=24% Similarity=0.112 Sum_probs=8.4
Q ss_pred CEEEEEEcCHHHHHHHH
Q 014384 89 GFAFIYMDDERDAEDAI 105 (425)
Q Consensus 89 g~aFV~F~~~~~A~~A~ 105 (425)
.-.||-|.-..-|.+++
T Consensus 174 T~v~vry~pe~iACaci 190 (367)
T KOG0835|consen 174 TDVFVRYSPESIACACI 190 (367)
T ss_pred cceeeecCHHHHHHHHH
Confidence 34556665444444444
No 223
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.46 E-value=6.3 Score=38.63 Aligned_cols=55 Identities=16% Similarity=0.205 Sum_probs=46.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCe-eEE-EEeCCEEEEEEcCHHHHHHHHHhc
Q 014384 53 MMRPIFCGNFEYDARQSDLERLFRRYGKV-DRV-DMKSGFAFIYMDDERDAEDAIRGL 108 (425)
Q Consensus 53 ~~~~l~V~nL~~~~t~~~L~~lF~~~G~V-~~v-~i~kg~aFV~F~~~~~A~~A~~~l 108 (425)
-.+.|-|.|+|.....+||..+|..||.- -.| +|-...||..|.....|..|| .|
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdthalaVFss~~~AaeaL-t~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDTHALAVFSSVNRAAEAL-TL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecceeEEeecchHHHHHHh-hc
Confidence 45889999999999999999999999752 233 335789999999999999999 45
No 224
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=72.63 E-value=1.9 Score=40.06 Aligned_cols=61 Identities=16% Similarity=0.389 Sum_probs=43.4
Q ss_pred CCceEEEcCCCCC------------CCHHHHHHHHhhcCCeeEEEEe------------------CCEE---------EE
Q 014384 53 MMRPIFCGNFEYD------------ARQSDLERLFRRYGKVDRVDMK------------------SGFA---------FI 93 (425)
Q Consensus 53 ~~~~l~V~nL~~~------------~t~~~L~~lF~~~G~V~~v~i~------------------kg~a---------FV 93 (425)
-.-|||+.+||-. -+++.|...|..||.|..|.|+ .||+ ||
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 3468999999853 2567899999999999998882 3443 35
Q ss_pred EEcCHHHHHHHHHhcCCCee
Q 014384 94 YMDDERDAEDAIRGLDRTEF 113 (425)
Q Consensus 94 ~F~~~~~A~~A~~~lng~~i 113 (425)
+|-.-..-..|+..|-|+.+
T Consensus 228 qfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHhHHHHHHHHhcchH
Confidence 55555555667777777655
No 225
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=66.98 E-value=3.9 Score=35.74 Aligned_cols=73 Identities=10% Similarity=0.109 Sum_probs=51.2
Q ss_pred cEEEEEcCCCCCCCH----HHHHhhhccCCcEEEEEEecc--EEEEEEcCHHHHHHHHHHcCCCccCCe-EEEEEEeeeC
Q 014384 151 KTLFVINFDPYHTRT----RDLERHFEPYGKIISVRIRRN--FAFVQYEVQEDATRALDATNMSKLTDR-VISVEYAVRD 223 (425)
Q Consensus 151 ~~l~V~nl~p~~~~~----~~L~~~f~~~G~v~~v~~~~g--~afV~f~~~~~A~~A~~~l~g~~~~g~-~i~v~~a~~~ 223 (425)
.++.+++++....+. .....+|.+|.+.....+.++ ..-|-|.+++.|..|..+++...|.|. .++.-++...
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCC
Confidence 446666663332222 234456667776666666655 455889999999999999999999998 8888887664
No 226
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=63.20 E-value=4.8 Score=36.67 Aligned_cols=47 Identities=17% Similarity=0.200 Sum_probs=36.6
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcC
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDD 97 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~kg~aFV~F~~ 97 (425)
.....+||+-|||..+|++.|..+.+++|-|..+...--++|++=..
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y~~e~gl~es~~ 83 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLYNDEFGLHESDL 83 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhheecccchhhhhCCc
Confidence 35568999999999999999999999999777666654445544333
No 227
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=61.16 E-value=8.5 Score=37.69 Aligned_cols=62 Identities=16% Similarity=0.182 Sum_probs=47.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEE----------eCCEEEEEEcCHHHHHHHHHhcCCCee
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRYGK-VDRVDM----------KSGFAFIYMDDERDAEDAIRGLDRTEF 113 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~G~-V~~v~i----------~kg~aFV~F~~~~~A~~A~~~lng~~i 113 (425)
.....|.|.+||+.+|+.+|.+-+..|-. |....+ ..+.|||.|..+++.......++|.+|
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 34567889999999999999887776532 222222 157899999999999999989999877
No 228
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=60.13 E-value=1.9 Score=43.98 Aligned_cols=62 Identities=10% Similarity=0.135 Sum_probs=51.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCee
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEF 113 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~i 113 (425)
...++|||.||.++++-.+|+.++..+--+..+.+. ..+++|.|.---....|+.+||+..+
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl 298 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRL 298 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccc
Confidence 456889999999999999999999998777777664 45788999977777777777787665
No 229
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=57.20 E-value=11 Score=30.79 Aligned_cols=39 Identities=13% Similarity=0.352 Sum_probs=22.8
Q ss_pred CHHHHHHHHhhcCCeeEEEE-----eCCEEEEEEcCHHH-HHHHH
Q 014384 67 RQSDLERLFRRYGKVDRVDM-----KSGFAFIYMDDERD-AEDAI 105 (425)
Q Consensus 67 t~~~L~~lF~~~G~V~~v~i-----~kg~aFV~F~~~~~-A~~A~ 105 (425)
+.++|.+.|..|..++-..+ ..|+|.|+|..--. =..|+
T Consensus 30 ~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp -SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHH
T ss_pred CHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHH
Confidence 45889999999987754444 37899999996443 33344
No 230
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=55.82 E-value=21 Score=25.52 Aligned_cols=19 Identities=11% Similarity=0.492 Sum_probs=16.3
Q ss_pred HHHHHHHHhhcCCeeEEEE
Q 014384 68 QSDLERLFRRYGKVDRVDM 86 (425)
Q Consensus 68 ~~~L~~lF~~~G~V~~v~i 86 (425)
.++|+++|+..|+|.-+.+
T Consensus 8 ~~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHHhcCcEEEEEE
Confidence 3689999999999987766
No 231
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=52.96 E-value=1.1e+02 Score=25.40 Aligned_cols=72 Identities=13% Similarity=0.074 Sum_probs=52.4
Q ss_pred CCceEEEcCCCCC---CCHHHHHHHHhhcC-CeeEEEEeCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEec
Q 014384 53 MMRPIFCGNFEYD---ARQSDLERLFRRYG-KVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 126 (425)
Q Consensus 53 ~~~~l~V~nL~~~---~t~~~L~~lF~~~G-~V~~v~i~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~ 126 (425)
+.-.|.|...... .+...|++++..-| .++.+....+...|.|.+.++-.+|.+.|....- ++-.|.+.++.
T Consensus 34 edpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~~~~~irf~~~~~Ql~Ak~vL~~~L~--~~y~VAlnl~p 109 (127)
T PRK10629 34 QESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPENDSLLIRFDSPEQSAAAKEVLDRTLP--HGYIIAQQDDN 109 (127)
T ss_pred CCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeCCEEEEEECCHHHHHHHHHHHHHHcC--CCCEEEEecCC
Confidence 3456666665333 56788899999888 5778888889999999999999888887775543 45555555443
No 232
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=52.71 E-value=59 Score=32.24 Aligned_cols=75 Identities=17% Similarity=0.369 Sum_probs=57.1
Q ss_pred cCCCceEEEcCCCCC-CCHHHHHHHHhhc----CCeeEEEEe--------------------------------------
Q 014384 51 EAMMRPIFCGNFEYD-ARQSDLERLFRRY----GKVDRVDMK-------------------------------------- 87 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~-~t~~~L~~lF~~~----G~V~~v~i~-------------------------------------- 87 (425)
...+..|-|-||.++ +...+|..+|+.| |+|..|.|.
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn 222 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDN 222 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCcc
Confidence 345678999999974 6788999999876 677777760
Q ss_pred ----------------C-------------------CEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEe
Q 014384 88 ----------------S-------------------GFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 125 (425)
Q Consensus 88 ----------------k-------------------g~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a 125 (425)
. -||.|+|.+.+.+......++|..++..+..+-+.|.
T Consensus 223 ~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfv 295 (622)
T COG5638 223 VFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFV 295 (622)
T ss_pred chhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeec
Confidence 1 2788999999999999999999988544555555553
No 233
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=50.32 E-value=69 Score=31.78 Aligned_cols=75 Identities=27% Similarity=0.453 Sum_probs=58.0
Q ss_pred CCCCCcEEEEEcCCCCCCCHHHHHhhhccC----CcEEEEEEe-------------------------------------
Q 014384 146 NTRPSKTLFVINFDPYHTRTRDLERHFEPY----GKIISVRIR------------------------------------- 184 (425)
Q Consensus 146 ~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~----G~v~~v~~~------------------------------------- 184 (425)
...+...|-|-||++..+...+|..+|..| |+|..|.|.
T Consensus 142 ~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~d 221 (622)
T COG5638 142 EGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDD 221 (622)
T ss_pred CCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCc
Confidence 356778999999999999899999888754 467767661
Q ss_pred -----------------cc-------------------EEEEEEcCHHHHHHHHHHcCCCccCC--eEEEEEEe
Q 014384 185 -----------------RN-------------------FAFVQYEVQEDATRALDATNMSKLTD--RVISVEYA 220 (425)
Q Consensus 185 -----------------~g-------------------~afV~f~~~~~A~~A~~~l~g~~~~g--~~i~v~~a 220 (425)
.| ||.|++.+.+.+......++|.++.. ..+.+.|.
T Consensus 222 n~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfv 295 (622)
T COG5638 222 NVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFV 295 (622)
T ss_pred cchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeec
Confidence 01 78899999999999999999988774 44555553
No 234
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=47.23 E-value=1.2e+02 Score=25.14 Aligned_cols=59 Identities=12% Similarity=0.187 Sum_probs=47.4
Q ss_pred CCHHHHHhhhccCC-cEEEEEEeccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEee
Q 014384 163 TRTRDLERHFEPYG-KIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221 (425)
Q Consensus 163 ~~~~~L~~~f~~~G-~v~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 221 (425)
.+...|.+.++.-| .++.+..-.+...|.|.+.++-.+|.+.|....-++-.|.+..+.
T Consensus 50 ~~~~~v~~~L~~~gI~~ksi~~~~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~p 109 (127)
T PRK10629 50 PDGFYVYQHLDANGIHIKSITPENDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDDN 109 (127)
T ss_pred chHHHHHHHHHHCCCCcceEEeeCCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 44678888888877 678888888999999999999999998887766666677666654
No 235
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=46.86 E-value=39 Score=35.03 Aligned_cols=6 Identities=67% Similarity=0.744 Sum_probs=2.4
Q ss_pred CCCCCC
Q 014384 248 SPSPYR 253 (425)
Q Consensus 248 s~s~~r 253 (425)
+.+|.+
T Consensus 113 s~S~er 118 (752)
T KOG0670|consen 113 SKSPER 118 (752)
T ss_pred CCChhh
Confidence 344433
No 236
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=44.70 E-value=43 Score=32.30 Aligned_cols=10 Identities=30% Similarity=0.311 Sum_probs=3.9
Q ss_pred hhcCCeeEEE
Q 014384 76 RRYGKVDRVD 85 (425)
Q Consensus 76 ~~~G~V~~v~ 85 (425)
...|-+..|.
T Consensus 130 r~LGF~~Hv~ 139 (367)
T KOG0835|consen 130 RELGFDVHVE 139 (367)
T ss_pred HHhCCeeeee
Confidence 3334443333
No 237
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=42.75 E-value=26 Score=30.67 Aligned_cols=41 Identities=20% Similarity=0.206 Sum_probs=31.5
Q ss_pred CCHHHHHHHHhhc-CCeeEEEEe---------CCEEEEEEcCHHHHHHHHH
Q 014384 66 ARQSDLERLFRRY-GKVDRVDMK---------SGFAFIYMDDERDAEDAIR 106 (425)
Q Consensus 66 ~t~~~L~~lF~~~-G~V~~v~i~---------kg~aFV~F~~~~~A~~A~~ 106 (425)
.|+++|.++...- |++..|.+. +|-.||+|.+.++|.++++
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh
Confidence 5666666655433 688888882 6899999999999998774
No 238
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=42.38 E-value=64 Score=29.37 Aligned_cols=53 Identities=26% Similarity=0.329 Sum_probs=34.5
Q ss_pred CceeeeeeeeEEEEeCCCCcccccccCCcceeecccccccchhhhhhhcCCCceEEEcCCCCCCCHHHHHHHHhhcC
Q 014384 3 KSVSVYQCHYLLIVYSHSVWPVQKKYLPRRLYVLGFRRSHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYG 79 (425)
Q Consensus 3 ~~~~~~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G 79 (425)
++|.|-=...+++.|.+... ....++.|+.. .+.-+||+|.| +.|-.|=.+||
T Consensus 44 ~a~s~~~g~~~~lAys~~~~---~~l~pR~F~~~---------------DdIfCiF~G~L------~Nl~~L~qqYG 96 (228)
T PF12481_consen 44 NAFSMNFGDSAALAYSHSNQ---SSLHPRLFAGV---------------DDIFCIFLGSL------ENLCSLRQQYG 96 (228)
T ss_pred CeEEEEcCCCEEEEEecCCC---Ccccccccccc---------------CCEEEEEecch------hhHHHHHHHhC
Confidence 34455455678888887763 34556666555 34578999988 45666666777
No 239
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.20 E-value=48 Score=32.74 Aligned_cols=57 Identities=23% Similarity=0.331 Sum_probs=44.0
Q ss_pred CCCCcEEEEEcCCCCCCCHHHHHhhhccCCc--EEEEEEeccEEEEEEcCHHHHHHHHHH
Q 014384 147 TRPSKTLFVINFDPYHTRTRDLERHFEPYGK--IISVRIRRNFAFVQYEVQEDATRALDA 204 (425)
Q Consensus 147 ~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~--v~~v~~~~g~afV~f~~~~~A~~A~~~ 204 (425)
..-.+.|-|.++ |.....+||...|+.|+. ....++-...||..|.+...|..||..
T Consensus 388 ~dlpHVlEIydf-p~efkteDll~~f~~yq~kgfdIkWvDdthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 388 SDLPHVLEIYDF-PDEFKTEDLLKAFETYQNKGFDIKWVDDTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccccceeEeccC-chhhccHHHHHHHHHhhcCCceeEEeecceeEEeecchHHHHHHhhc
Confidence 344578899999 555557889999999874 333445577999999999999999974
No 240
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=39.73 E-value=1.7e+02 Score=30.72 Aligned_cols=35 Identities=9% Similarity=0.174 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe
Q 014384 150 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR 184 (425)
Q Consensus 150 ~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~ 184 (425)
...++|.++....+...-..+++.++|++..|.+.
T Consensus 61 DrvvMVNGvsMenv~haFAvQqLrksgK~A~Itvk 95 (1027)
T KOG3580|consen 61 DRVVMVNGVSMENVLHAFAVQQLRKSGKVAAITVK 95 (1027)
T ss_pred CeEEEEcCcchhhhHHHHHHHHHHhhccceeEEec
Confidence 45677877754555455556777889998888875
No 241
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=39.43 E-value=18 Score=35.10 Aligned_cols=46 Identities=24% Similarity=0.390 Sum_probs=38.6
Q ss_pred CCHHHHHHHHhhcCCeeEEEE----eCCEEEEEEcCHHHHHHHHHhcCCC
Q 014384 66 ARQSDLERLFRRYGKVDRVDM----KSGFAFIYMDDERDAEDAIRGLDRT 111 (425)
Q Consensus 66 ~t~~~L~~lF~~~G~V~~v~i----~kg~aFV~F~~~~~A~~A~~~lng~ 111 (425)
++...|.+++.+.|.|..-.| +.|.+||..-.+++|++|++.|.+.
T Consensus 273 ~~~p~iF~~i~~~G~v~~~EM~rtFNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 273 WPPPPIFKWLQKAGNVEREEMYRTFNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CCCcHHHHHHHHhcCCCHHHHHHHhcCccceEEEEcHHHHHHHHHHHHhc
Confidence 345788888889998876555 6899999999999999999999875
No 242
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=37.46 E-value=1e+02 Score=29.07 Aligned_cols=46 Identities=13% Similarity=0.241 Sum_probs=34.8
Q ss_pred CCcEEEEEcCCCCCCCHHHHHhhhccCCcE-EEEEE--eccEEEEEEcCH
Q 014384 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKI-ISVRI--RRNFAFVQYEVQ 195 (425)
Q Consensus 149 ~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v-~~v~~--~~g~afV~f~~~ 195 (425)
...-|+|+|| +..+...+|+..+.+.+-+ ..+.. ..+-||+.|.+.
T Consensus 329 ~~~di~~~nl-~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 329 AKTDIKLTNL-SRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNR 377 (396)
T ss_pred cccceeeccC-ccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCc
Confidence 3456999999 8999999999998877632 33333 467899999764
No 243
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=36.60 E-value=1.1e+02 Score=23.34 Aligned_cols=50 Identities=22% Similarity=0.350 Sum_probs=37.0
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEEe-----CCEEEEEEcCHHHHHHHHH
Q 014384 57 IFCGNFEYDARQSDLERLFRR-YG-KVDRVDMK-----SGFAFIYMDDERDAEDAIR 106 (425)
Q Consensus 57 l~V~nL~~~~t~~~L~~lF~~-~G-~V~~v~i~-----kg~aFV~F~~~~~A~~A~~ 106 (425)
-|+-.++..++..+|++.++. || +|..|... .--|||.+.....|.....
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIAS 79 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHH
Confidence 344456889999999999987 56 46666552 3479999999888887653
No 244
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=36.00 E-value=16 Score=28.27 Aligned_cols=26 Identities=8% Similarity=0.124 Sum_probs=22.0
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHh
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFR 76 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~ 76 (425)
....++|.|.|||..+.+++|.++++
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeEE
Confidence 45568999999999999999998754
No 245
>COG4314 NosL Predicted lipoprotein involved in nitrous oxide reduction [Energy production and conversion]
Probab=34.25 E-value=40 Score=28.79 Aligned_cols=105 Identities=12% Similarity=0.058 Sum_probs=55.7
Q ss_pred eeeeEEEEeCCCCcccccccCCcceeecccccccch---hhhhhhcCCCceEEEcCCC--CCCCHHHHHHHHhhcCC--e
Q 014384 9 QCHYLLIVYSHSVWPVQKKYLPRRLYVLGFRRSHSQ---LSIAAFEAMMRPIFCGNFE--YDARQSDLERLFRRYGK--V 81 (425)
Q Consensus 9 ~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~V~nL~--~~~t~~~L~~lF~~~G~--V 81 (425)
.||||=+.+....-|.-..+++......-|....+. ....+++.....|||..+. .++++-.-.+.|..--. |
T Consensus 37 ~g~ycgMnl~ehpGPKgQi~l~g~~qP~wfsst~e~f~~tllPEepk~iaaiyV~DM~~~~~W~~P~a~~wiDA~kafYV 116 (176)
T COG4314 37 MGHYCGMNLLEHPGPKGQIILNGKPQPIWFSSTREMFGFTLLPEEPKGIAAIYVSDMGNAADWTEPGADNWIDAKKAFYV 116 (176)
T ss_pred cccccceeeecCCCCcceEeeCCCCCceeeecHHHHhhHhcCCcCcCceeEEEEeccccccCcCCCCcccceeccceEEE
Confidence 499998888776666655555555544434333332 2223455666889998876 34443332223221100 1
Q ss_pred eEEEEe--CCEEEEE-EcCHHHHHHHHHhcCCCee
Q 014384 82 DRVDMK--SGFAFIY-MDDERDAEDAIRGLDRTEF 113 (425)
Q Consensus 82 ~~v~i~--kg~aFV~-F~~~~~A~~A~~~lng~~i 113 (425)
...... .|--... |.++++|++....--|+.+
T Consensus 117 igs~~~GgMGA~~A~pF~~e~aA~~faa~~GGrvl 151 (176)
T COG4314 117 IGSQRIGGMGATLASPFSDEEAAERFAADNGGRVL 151 (176)
T ss_pred ecccccCCccchhcccccCHHHHHHHHHhcCCeEE
Confidence 111111 2333333 9999999998854444433
No 246
>smart00703 NRF N-terminal domain in C. elegans NRF-6 (Nose Resistant to Fluoxetine-4) and NDG-4 (resistant to nordihydroguaiaretic acid-4). Also present in several other worm and fly proteins.
Probab=34.04 E-value=67 Score=25.67 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=19.5
Q ss_pred eEEEc-CCCCCCCHHHHHHHHhhcCC
Q 014384 56 PIFCG-NFEYDARQSDLERLFRRYGK 80 (425)
Q Consensus 56 ~l~V~-nL~~~~t~~~L~~lF~~~G~ 80 (425)
.|.+| -||..++.++|..+|..+..
T Consensus 71 ~~~~gvC~P~sCs~~dv~~l~~~~~~ 96 (110)
T smart00703 71 VLRTGVCLPSSCSAADLKTLLNQLSK 96 (110)
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34444 78999999999999988643
No 247
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=33.95 E-value=79 Score=26.49 Aligned_cols=32 Identities=13% Similarity=0.002 Sum_probs=27.3
Q ss_pred eEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEe
Q 014384 56 PIFCGNFEYD-ARQSDLERLFRRYGKVDRVDMK 87 (425)
Q Consensus 56 ~l~V~nL~~~-~t~~~L~~lF~~~G~V~~v~i~ 87 (425)
=|.|.|||.. .+++-|..+-+.+|++..+...
T Consensus 106 WVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 106 WVRIYGLPLHLWSEEILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred hhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcC
Confidence 4778899987 6788899999999999998873
No 248
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=33.43 E-value=1.4e+02 Score=20.20 Aligned_cols=48 Identities=6% Similarity=0.097 Sum_probs=34.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcCHHHHH
Q 014384 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAE 102 (425)
Q Consensus 55 ~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~kg~aFV~F~~~~~A~ 102 (425)
..++|.+.....+.++|.+++..+|--..-.+....-+|.+.+.....
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~~~~~~thvI~~~~~~~~ 49 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGKVTSSVSKKTTHVIVGSDAGPK 49 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCEEeccccCCceEEEECCCCCch
Confidence 356777776688899999999999864444444566677776665544
No 249
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=32.97 E-value=1.5e+02 Score=22.24 Aligned_cols=49 Identities=20% Similarity=0.346 Sum_probs=36.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEEe-----CCEEEEEEcCHHHHHHHH
Q 014384 57 IFCGNFEYDARQSDLERLFRR-YG-KVDRVDMK-----SGFAFIYMDDERDAEDAI 105 (425)
Q Consensus 57 l~V~nL~~~~t~~~L~~lF~~-~G-~V~~v~i~-----kg~aFV~F~~~~~A~~A~ 105 (425)
-|+-.++..+|..+|+..++. || +|..|... ---|||.+..-..|...-
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va 71 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIA 71 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHH
Confidence 455567899999999999987 56 46665552 246999999888887754
No 250
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=32.93 E-value=45 Score=32.20 Aligned_cols=32 Identities=22% Similarity=0.250 Sum_probs=24.0
Q ss_pred EEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEec
Q 014384 91 AFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 126 (425)
Q Consensus 91 aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~ 126 (425)
|||.|++..+|..|++.+.... ...+.|+.|.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~----~~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR----PNSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC----CCCceEeeCC
Confidence 7999999999999998665543 3455666554
No 251
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=32.74 E-value=67 Score=30.91 Aligned_cols=69 Identities=12% Similarity=0.070 Sum_probs=38.7
Q ss_pred eeeeeEEEEeCCCCcccccccCCcceeecccccccchhhhhhhcCCCceEEEcCCCCCCCH--------HHHHHHHhhcC
Q 014384 8 YQCHYLLIVYSHSVWPVQKKYLPRRLYVLGFRRSHSQLSIAAFEAMMRPIFCGNFEYDARQ--------SDLERLFRRYG 79 (425)
Q Consensus 8 ~~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~--------~~L~~lF~~~G 79 (425)
+.|+||++...+..++... ..|.+..........+..........|.++.+..-.-. ..+.+++..+|
T Consensus 41 h~C~YCYa~~~~~~~~~~~----~~v~vk~n~~e~l~~el~~~~~k~~~i~is~~TDpyqp~E~~~~ltR~ilei~~~~~ 116 (297)
T COG1533 41 HGCIYCYARPMHGYLPKSP----TKVNVKENLLELLERELRKPGPKRTVIAISSVTDPYQPIEKEYRLTRKILEILLKYG 116 (297)
T ss_pred CCCceeecccccccccCCC----ceeeechhHHHHHHHHHhhccCCceEEEEecCCCCCCcchHHHHHHHHHHHHHHHcC
Confidence 4599999998887755443 23333332222222222222467788999988543332 33455666665
Q ss_pred C
Q 014384 80 K 80 (425)
Q Consensus 80 ~ 80 (425)
.
T Consensus 117 ~ 117 (297)
T COG1533 117 F 117 (297)
T ss_pred C
Confidence 4
No 252
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=32.63 E-value=1.3e+02 Score=31.77 Aligned_cols=102 Identities=17% Similarity=0.297 Sum_probs=64.7
Q ss_pred CCCCCCCHHHHHHHHhhcCCeeEEEEeC-CEEEEEEcCHHHHHHHHHhcC--CCeec----CCCcEEEEEEeccccCCCC
Q 014384 61 NFEYDARQSDLERLFRRYGKVDRVDMKS-GFAFIYMDDERDAEDAIRGLD--RTEFG----RKGRRLRVEWTKHERGIRR 133 (425)
Q Consensus 61 nL~~~~t~~~L~~lF~~~G~V~~v~i~k-g~aFV~F~~~~~A~~A~~~ln--g~~ig----~~gr~l~V~~a~~~~~~~~ 133 (425)
+.++..-.++|.+.|..-+-|..|.+.. ||-++.+....-+...+..+. +..+| ..|++|.|+|+...
T Consensus 53 ~~~P~eiA~~i~~~l~~~~~~~~veiaGpgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaN----- 127 (577)
T COG0018 53 GKNPREIAEEIAEKLDTDEIIEKVEIAGPGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSAN----- 127 (577)
T ss_pred CCCHHHHHHHHHHhccccCcEeEEEEcCCCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCC-----
Confidence 3344444566777777666677888854 766666665555555544444 22221 16889999998753
Q ss_pred CCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCC-cEEEEEE
Q 014384 134 PGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYG-KIISVRI 183 (425)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G-~v~~v~~ 183 (425)
|..-|+||.| -..+=-+.|..+++.+| .|+....
T Consensus 128 ---------------ptkplHiGHl-R~aiiGDsLaril~~~Gy~V~r~~y 162 (577)
T COG0018 128 ---------------PTGPLHIGHL-RNAIIGDSLARILEFLGYDVTRENY 162 (577)
T ss_pred ---------------CCCCcccchh-hhhHHHHHHHHHHHHcCCCeeEEee
Confidence 3456888888 45555788899988888 4444433
No 253
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=32.54 E-value=1e+02 Score=22.77 Aligned_cols=39 Identities=18% Similarity=0.383 Sum_probs=30.0
Q ss_pred hhccCCcEEEEEEeccEEEEEEcCHHHHHHHHHHcCCCcc
Q 014384 171 HFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKL 210 (425)
Q Consensus 171 ~f~~~G~v~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 210 (425)
.+.+||.|..+.-.-.|+.+ |-+.+++...++.|....|
T Consensus 16 ~L~kfG~i~Y~Skk~kYvvl-Yvn~~~~e~~~~kl~~l~f 54 (71)
T PF09902_consen 16 QLRKFGDIHYVSKKMKYVVL-YVNEEDVEEIIEKLKKLKF 54 (71)
T ss_pred hHhhcccEEEEECCccEEEE-EECHHHHHHHHHHHhcCCC
Confidence 46789999998877777754 6788888888888776543
No 254
>PF01782 RimM: RimM N-terminal domain; InterPro: IPR002676 The RimM protein is essential for efficient processing of 16S rRNA []. The RimM protein was shown to have affinity for free ribosomal 30S subunits but not for 30S subunits in the 70S ribosomes [].; GO: 0006364 rRNA processing; PDB: 2QGG_A 3A1P_C 2DOG_A 2DYI_A 3H9N_A 2F1L_A.
Probab=31.59 E-value=86 Score=23.47 Aligned_cols=33 Identities=24% Similarity=0.249 Sum_probs=24.1
Q ss_pred CeeEEEEeCCEEEEEEcCHHHHHHHHHhcCCCee
Q 014384 80 KVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113 (425)
Q Consensus 80 ~V~~v~i~kg~aFV~F~~~~~A~~A~~~lng~~i 113 (425)
+|+.+.+..+..+|.|+..++-++|. .|.|..|
T Consensus 46 ~v~~~~~~~~~~i~~~~gi~~r~~Ae-~l~g~~l 78 (84)
T PF01782_consen 46 KVESVRPHGKSLIVKFEGIDDREAAE-ALRGCEL 78 (84)
T ss_dssp EEEEEEEETTEEEEEETT--SHHHHH-TTTT-EE
T ss_pred EEEEEEEeCCEEEEEEcCCCCHHHHH-hhCCCEE
Confidence 35666667999999999999999998 7776655
No 255
>PF06804 Lipoprotein_18: NlpB/DapX lipoprotein; InterPro: IPR010653 This entry consists of a number of bacterial lipoproteins often known as NlpB or DapX. This lipoprotein is detected in outer membrane vesicles in Escherichia coli and appears to be non-essential [].; PDB: 2YH6_A 3TGO_D 2YH5_A 2LAF_A 2LAE_A 3SNS_A.
Probab=31.24 E-value=1.8e+02 Score=28.02 Aligned_cols=99 Identities=14% Similarity=0.183 Sum_probs=55.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEeccccCC
Q 014384 53 MMRPIFCGNFEYDARQSDLERLFRRYG-KVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGI 131 (425)
Q Consensus 53 ~~~~l~V~nL~~~~t~~~L~~lF~~~G-~V~~v~i~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~~~~ 131 (425)
....++|-+.+++..-..|-..+.+.| +|++..-+.|.-||.|..+++. +...|-+..+.+......|.+....
T Consensus 197 ~g~~~l~~~~~fd~aW~rl~~aL~~~gf~V~d~drs~G~~~v~y~~~~~~--~w~~l~~~~~~l~~~~Y~i~l~~~g--- 271 (303)
T PF06804_consen 197 NGQPALILRAPFDRAWRRLGLALDRLGFTVEDRDRSQGVYYVRYKPPDSE--FWSSLGGKDPDLKAGEYRIQLGDLG--- 271 (303)
T ss_dssp TS-EEEEEES-HHHHHHHHHHHHHHTTEEEEEEETTTTEEEEEE----HH--HHHHHTS------SEEEEEEEEEET---
T ss_pred CCceEEEECCcHHHHHHHHHHHHHhCCCEEEecccccEEEEEEEcCCChh--hHHHcCCCccccCCCceEEEEEeCC---
Confidence 345667778888889999999999999 5777777899999999987654 2233433333223334445443321
Q ss_pred CCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhc
Q 014384 132 RRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173 (425)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~ 173 (425)
..+.|.|.+-+....+.+.+..++.
T Consensus 272 -----------------~~t~v~v~d~~G~~l~~~~~~~l~~ 296 (303)
T PF06804_consen 272 -----------------NRTSVTVLDSDGKPLSSEQAQRLYQ 296 (303)
T ss_dssp -----------------TEEEEEEE-TTSSB--HHHHHHHHH
T ss_pred -----------------CcEEEEEECCCCCCCCHHHHHHHHH
Confidence 1356777666555565666655554
No 256
>PF14893 PNMA: PNMA
Probab=30.99 E-value=55 Score=31.97 Aligned_cols=75 Identities=13% Similarity=0.169 Sum_probs=45.7
Q ss_pred hhcCCCceEEEcCCCCCCCHHHHHHHHhh----cCCeeEEE---E---eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCc
Q 014384 49 AFEAMMRPIFCGNFEYDARQSDLERLFRR----YGKVDRVD---M---KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGR 118 (425)
Q Consensus 49 ~~~~~~~~l~V~nL~~~~t~~~L~~lF~~----~G~V~~v~---i---~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr 118 (425)
+.....+.|.|.+||.++++++|++.+.. .|...-+. . ....|+|+|...-+-... =..|..+|-
T Consensus 13 m~~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~n~~~i-----P~~i~g~gg 87 (331)
T PF14893_consen 13 MGVDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDVNYSLI-----PREIPGKGG 87 (331)
T ss_pred cCcChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccccchhhC-----chhcCCCCC
Confidence 44566789999999999999999887654 45432111 1 245788888763321111 112222577
Q ss_pred EEEEEEeccc
Q 014384 119 RLRVEWTKHE 128 (425)
Q Consensus 119 ~l~V~~a~~~ 128 (425)
.++|-|....
T Consensus 88 ~W~Vv~~p~~ 97 (331)
T PF14893_consen 88 PWRVVFKPPA 97 (331)
T ss_pred ceEEEecCCC
Confidence 7887765433
No 257
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=30.77 E-value=1.3e+02 Score=25.65 Aligned_cols=31 Identities=19% Similarity=0.442 Sum_probs=25.3
Q ss_pred eeEEEEe---CCEEEEEEcCHHHHHHHHHhcCCC
Q 014384 81 VDRVDMK---SGFAFIYMDDERDAEDAIRGLDRT 111 (425)
Q Consensus 81 V~~v~i~---kg~aFV~F~~~~~A~~A~~~lng~ 111 (425)
|.+|.++ +||.||+....+++..|+..+.+.
T Consensus 36 i~~i~vp~~fpGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 36 IYAILAPPELKGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred EEEEEccCCCCcEEEEEEEChHHHHHHHhcCCCE
Confidence 5566664 899999999889999999877764
No 258
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.54 E-value=2.2e+02 Score=24.80 Aligned_cols=57 Identities=9% Similarity=0.124 Sum_probs=45.3
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcCHHHHHHHHHhcC
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLD 109 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~kg~aFV~F~~~~~A~~A~~~ln 109 (425)
.+....++-| +|+..+.++-|.++-+.+|-|.+. --..-.+.|.+.+..+.|+..|.
T Consensus 108 ~p~~~~~iRv-~l~~~i~~erl~ei~E~~gvI~Ef--ee~~~V~I~Gdke~Ik~aLKe~s 164 (169)
T PF09869_consen 108 APPGFETIRV-KLKKPIQEERLQEISEWHGVIFEF--EEDDKVVIEGDKERIKKALKEFS 164 (169)
T ss_pred CCCCceeEEE-ecCccchHHHHHHHHHHhceeEEe--cCCcEEEEeccHHHHHHHHHHHH
Confidence 4455566666 899999999999999999988776 33344678999999999997653
No 259
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=30.52 E-value=89 Score=23.69 Aligned_cols=33 Identities=21% Similarity=0.436 Sum_probs=24.1
Q ss_pred eeEEEEe---CCEEEEEEcCHHHHHHHHHhcCCCee
Q 014384 81 VDRVDMK---SGFAFIYMDDERDAEDAIRGLDRTEF 113 (425)
Q Consensus 81 V~~v~i~---kg~aFV~F~~~~~A~~A~~~lng~~i 113 (425)
|..|... +||-|||=.++.++..|+..+.+...
T Consensus 34 I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i~~ 69 (84)
T PF03439_consen 34 IYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHIRG 69 (84)
T ss_dssp --EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTEEE
T ss_pred eEEEEEeCCCceEEEEEeCCHHHHHHHHhcccceee
Confidence 4555443 89999999999999999987776544
No 260
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=30.30 E-value=1.1e+02 Score=22.58 Aligned_cols=50 Identities=22% Similarity=0.474 Sum_probs=36.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcCHHHHHHHHHhcCCCee
Q 014384 56 PIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113 (425)
Q Consensus 56 ~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~kg~aFV~F~~~~~A~~A~~~lng~~i 113 (425)
.||+.++ .++. -+.+||.|..+.=...|| |-|-+.++|+..++.|....|
T Consensus 5 iVyl~~~------k~~r-~L~kfG~i~Y~Skk~kYv-vlYvn~~~~e~~~~kl~~l~f 54 (71)
T PF09902_consen 5 IVYLYSL------KDAR-QLRKFGDIHYVSKKMKYV-VLYVNEEDVEEIIEKLKKLKF 54 (71)
T ss_pred EEEEech------HhHH-hHhhcccEEEEECCccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 4566554 3433 457899998777667777 558899999999999988766
No 261
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=30.14 E-value=28 Score=35.75 Aligned_cols=69 Identities=23% Similarity=0.285 Sum_probs=46.4
Q ss_pred EcCCCCCCCHHHHHH-HHhhcCCeeEE-EE--eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEecccc
Q 014384 59 CGNFEYDARQSDLER-LFRRYGKVDRV-DM--KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 129 (425)
Q Consensus 59 V~nL~~~~t~~~L~~-lF~~~G~V~~v-~i--~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~~ 129 (425)
+.+++..+-..++.. ++..++-+..- .+ ...+|++.|+++..+.+|+..++|..+ .+..+.|..+....
T Consensus 30 ~e~~~~~~~q~~~~k~~~~~~~~~~s~tk~~~~~~~~~~~~et~~~~~ka~~~v~g~~~--k~~~~~~~~~~~~~ 102 (534)
T KOG2187|consen 30 IEMIPTFIGQKQLNKVLLKILRDVKSKTKLPKMPKYAYVTFETPSDAGKAINLVDGLLY--KGFILRVQLGATEV 102 (534)
T ss_pred eeccCchhhhhHHHhhhhhhcccccccCCCCCCCCceEEEEeccchhhhHHHHHhhhhh--hcchhhhhhccccc
Confidence 344555555444444 33334433221 22 267999999999999999999999988 78888887766544
No 262
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=29.68 E-value=1.9e+02 Score=19.87 Aligned_cols=51 Identities=12% Similarity=0.186 Sum_probs=37.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcCH----HHHHHHHH
Q 014384 56 PIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDE----RDAEDAIR 106 (425)
Q Consensus 56 ~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--kg~aFV~F~~~----~~A~~A~~ 106 (425)
||.|.||.-.--...|+..+...--|..+.+. .+.+-|.|... ++..++|+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~ 57 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIE 57 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHH
Confidence 56777777666678888888888778777774 78888999855 44555554
No 263
>PRK11679 lipoprotein; Provisional
Probab=28.29 E-value=3.5e+02 Score=26.57 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=40.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeCCEEEEEEcCHHH
Q 014384 54 MRPIFCGNFEYDARQSDLERLFRRYG-KVDRVDMKSGFAFIYMDDERD 100 (425)
Q Consensus 54 ~~~l~V~nL~~~~t~~~L~~lF~~~G-~V~~v~i~kg~aFV~F~~~~~ 100 (425)
...++|-+.+++..-.-|-..+.+.| +|++-.-+.|.-||.|..+++
T Consensus 239 g~~~l~~~~~fdraW~rlg~aLdr~Gf~V~Drdrs~G~y~V~y~~~~~ 286 (346)
T PRK11679 239 GLPVLIVRAPYNVVWQRLPAALEKVGMKVTDRTRSQGTVAVTYKPPSD 286 (346)
T ss_pred CCeEEEeCCcHHHHHHHHHHHHHhcCCeEeeccccCcEEEEEecCCCc
Confidence 34577778888999999999999999 678888899999999998886
No 264
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=28.22 E-value=2.3e+02 Score=20.74 Aligned_cols=40 Identities=25% Similarity=0.303 Sum_probs=31.0
Q ss_pred HHHHHHHhhcCCeeEEEEe----CCEEEEEEcCHHHHHHHHHhcC
Q 014384 69 SDLERLFRRYGKVDRVDMK----SGFAFIYMDDERDAEDAIRGLD 109 (425)
Q Consensus 69 ~~L~~lF~~~G~V~~v~i~----kg~aFV~F~~~~~A~~A~~~ln 109 (425)
.+|.+.+..+| +.-..|+ -++.|+.|.+.+.|+.++..|.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 56777888899 6666774 4688888889999988887664
No 265
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=27.62 E-value=44 Score=21.05 Aligned_cols=17 Identities=29% Similarity=0.546 Sum_probs=10.6
Q ss_pred CCCCHHHHHHHHhhcCC
Q 014384 64 YDARQSDLERLFRRYGK 80 (425)
Q Consensus 64 ~~~t~~~L~~lF~~~G~ 80 (425)
.++++++|++.|.+.+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 46789999999998754
No 266
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=26.92 E-value=2.3e+02 Score=21.82 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=31.2
Q ss_pred HHHHHHHHhhcC-CeeEEEEeC----CEEEEEEcCHHHHHHHHHhcC
Q 014384 68 QSDLERLFRRYG-KVDRVDMKS----GFAFIYMDDERDAEDAIRGLD 109 (425)
Q Consensus 68 ~~~L~~lF~~~G-~V~~v~i~k----g~aFV~F~~~~~A~~A~~~ln 109 (425)
.+.+.++++.+| +|+.+.+-. .++.+++.|.+.|.++.-.+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 456788888875 788888854 477889999998887764444
No 267
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=26.64 E-value=1.9e+02 Score=22.23 Aligned_cols=42 Identities=21% Similarity=0.149 Sum_probs=32.0
Q ss_pred HHHHHhhhccCC-cEEEEEEecc----EEEEEEcCHHHHHHHHHHcC
Q 014384 165 TRDLERHFEPYG-KIISVRIRRN----FAFVQYEVQEDATRALDATN 206 (425)
Q Consensus 165 ~~~L~~~f~~~G-~v~~v~~~~g----~afV~f~~~~~A~~A~~~l~ 206 (425)
.+.++++++.+| +++.+.+..| ...+++.|.+.|.++.-.+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 466778888876 7888888765 67789999988887765543
No 268
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=26.31 E-value=75 Score=30.64 Aligned_cols=35 Identities=29% Similarity=0.248 Sum_probs=26.3
Q ss_pred EEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeCC
Q 014384 188 AFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDD 224 (425)
Q Consensus 188 afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~ 224 (425)
|||+|.+..+|..|++.+..... ..+.+..|.++.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCCCcc
Confidence 79999999999999997665443 445776666653
No 269
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=26.30 E-value=79 Score=23.12 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=21.6
Q ss_pred CEEEEEEcCHHHHHHHHHhcCCCee
Q 014384 89 GFAFIYMDDERDAEDAIRGLDRTEF 113 (425)
Q Consensus 89 g~aFV~F~~~~~A~~A~~~lng~~i 113 (425)
.+++|.|.+..+|.+|-..|....|
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCC
Confidence 5789999999999999988876655
No 270
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=25.36 E-value=2.7e+02 Score=20.18 Aligned_cols=44 Identities=16% Similarity=0.217 Sum_probs=33.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--eCCEEEEEEcC
Q 014384 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--KSGFAFIYMDD 97 (425)
Q Consensus 54 ~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--~kg~aFV~F~~ 97 (425)
..+|+|.++.=.-=...+...+.....|..+.+ ..+-++|.|.+
T Consensus 3 ~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~ 48 (71)
T COG2608 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDS 48 (71)
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcC
Confidence 356777777665557788888888877777666 47779999998
No 271
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=25.11 E-value=48 Score=23.57 Aligned_cols=21 Identities=38% Similarity=0.629 Sum_probs=16.7
Q ss_pred CCeeEEEEeCCEEEEEEcCHH
Q 014384 79 GKVDRVDMKSGFAFIYMDDER 99 (425)
Q Consensus 79 G~V~~v~i~kg~aFV~F~~~~ 99 (425)
|+|+.+...+||+||+-.+..
T Consensus 3 G~V~~~~~~kgyGFI~~~~~~ 23 (66)
T PF00313_consen 3 GTVKWFDDEKGYGFITSDDGG 23 (66)
T ss_dssp EEEEEEETTTTEEEEEETTSS
T ss_pred EEEEEEECCCCceEEEEcccc
Confidence 677777778999999987643
No 272
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=24.53 E-value=3.6e+02 Score=21.98 Aligned_cols=31 Identities=29% Similarity=0.352 Sum_probs=25.1
Q ss_pred CCCHHHHHhhhccCCcEEEEEEeccEEEEEEcCHHHHHHHHHHcCCC
Q 014384 162 HTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMS 208 (425)
Q Consensus 162 ~~~~~~L~~~f~~~G~v~~v~~~~g~afV~f~~~~~A~~A~~~l~g~ 208 (425)
.++++++.-+.++.|. +.+.|.+||+..+|-
T Consensus 74 ~i~~edI~lv~~q~gv----------------s~~~A~~AL~~~~gD 104 (115)
T PRK06369 74 EIPEEDIELVAEQTGV----------------SEEEARKALEEANGD 104 (115)
T ss_pred CCCHHHHHHHHHHHCc----------------CHHHHHHHHHHcCCc
Confidence 4668899999988874 678999999987763
No 273
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=24.19 E-value=2.6e+02 Score=25.86 Aligned_cols=73 Identities=15% Similarity=0.219 Sum_probs=44.3
Q ss_pred CcEEEEEcCCCCCCC---HHHHHhhhccCC-cEEEEEEe---ccEEEEEE-cCHHHHHHHHHHcCCCccCCeEEEEEEee
Q 014384 150 SKTLFVINFDPYHTR---TRDLERHFEPYG-KIISVRIR---RNFAFVQY-EVQEDATRALDATNMSKLTDRVISVEYAV 221 (425)
Q Consensus 150 ~~~l~V~nl~p~~~~---~~~L~~~f~~~G-~v~~v~~~---~g~afV~f-~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 221 (425)
...|||++|.....+ -+.|...+.+-+ .++++.+. .||+.-.. .+.++...+++.+.+..+--..+-+.++.
T Consensus 37 ~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy~G~Gt~slk~D~edl~~l~~Hi~~~~fSt~vVL~GhST 116 (299)
T KOG4840|consen 37 VKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSYNGYGTFSLKDDVEDLKCLLEHIQLCGFSTDVVLVGHST 116 (299)
T ss_pred EEEEEEcccCCCccccccHHHHHHHHhhccceeeeeeccccccccccccccccHHHHHHHHHHhhccCcccceEEEecCc
Confidence 568999998322222 345555555555 45555554 45544333 56778888888877777666666666644
Q ss_pred e
Q 014384 222 R 222 (425)
Q Consensus 222 ~ 222 (425)
.
T Consensus 117 G 117 (299)
T KOG4840|consen 117 G 117 (299)
T ss_pred c
Confidence 3
No 274
>PRK02302 hypothetical protein; Provisional
Probab=24.04 E-value=1.6e+02 Score=22.75 Aligned_cols=38 Identities=24% Similarity=0.433 Sum_probs=29.1
Q ss_pred hhccCCcEEEEEEeccEEEEEEcCHHHHHHHHHHcCCCc
Q 014384 171 HFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSK 209 (425)
Q Consensus 171 ~f~~~G~v~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~ 209 (425)
.+.+||.|..+.-.-.|+++ |-+.++|.+.++.|....
T Consensus 22 ~LrkfG~I~Y~Skk~kYvvl-Yvn~~~~e~~~~kl~~l~ 59 (89)
T PRK02302 22 KLSKYGDIVYHSKRSRYLVL-YVNKEDVEQKLEELSKLK 59 (89)
T ss_pred HHhhcCcEEEEeccccEEEE-EECHHHHHHHHHHHhcCC
Confidence 35789999988877777754 677888888888776654
No 275
>PRK15464 cold shock-like protein CspH; Provisional
Probab=24.01 E-value=49 Score=24.30 Aligned_cols=20 Identities=45% Similarity=0.529 Sum_probs=16.1
Q ss_pred cCCeeEEEEeCCEEEEEEcC
Q 014384 78 YGKVDRVDMKSGFAFIYMDD 97 (425)
Q Consensus 78 ~G~V~~v~i~kg~aFV~F~~ 97 (425)
.|+|+...-.+||+||+=.+
T Consensus 6 ~G~Vk~fn~~KGfGFI~~~~ 25 (70)
T PRK15464 6 TGIVKTFDRKSGKGFIIPSD 25 (70)
T ss_pred eEEEEEEECCCCeEEEccCC
Confidence 47888777789999997665
No 276
>PRK02886 hypothetical protein; Provisional
Probab=23.95 E-value=1.6e+02 Score=22.63 Aligned_cols=39 Identities=15% Similarity=0.298 Sum_probs=29.3
Q ss_pred hhccCCcEEEEEEeccEEEEEEcCHHHHHHHHHHcCCCcc
Q 014384 171 HFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKL 210 (425)
Q Consensus 171 ~f~~~G~v~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 210 (425)
.+.+||.|..+.-.-.|+++ |-+.++|.+.++.|....|
T Consensus 20 ~LrkyG~I~Y~Skr~kYvvl-Yvn~~~~e~~~~kl~~l~f 58 (87)
T PRK02886 20 QLRKFGNVHYVSKRLKYAVL-YCDMEQVEDIMNKLSSLPF 58 (87)
T ss_pred HHhhcCcEEEEeccccEEEE-EECHHHHHHHHHHHhcCCC
Confidence 35789999988777777754 6778888888887776543
No 277
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=23.53 E-value=1.3e+02 Score=22.68 Aligned_cols=32 Identities=19% Similarity=0.321 Sum_probs=22.6
Q ss_pred cEEEEEEe---ccEEEEEEcCHHHHHHHHHHcCCC
Q 014384 177 KIISVRIR---RNFAFVQYEVQEDATRALDATNMS 208 (425)
Q Consensus 177 ~v~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~ 208 (425)
.|..+-.+ +||-|||=.+..++..|+..+.+.
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 44444443 899999999999999999877653
No 278
>PRK02886 hypothetical protein; Provisional
Probab=23.47 E-value=1.6e+02 Score=22.60 Aligned_cols=52 Identities=19% Similarity=0.354 Sum_probs=37.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcCHHHHHHHHHhcCCCee
Q 014384 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113 (425)
Q Consensus 54 ~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~kg~aFV~F~~~~~A~~A~~~lng~~i 113 (425)
.-.||+.+| .++ .-+.+||.|..+.-...|+ |-|-+.++|+..++.|....|
T Consensus 7 glIVyl~~~------k~~-r~LrkyG~I~Y~Skr~kYv-vlYvn~~~~e~~~~kl~~l~f 58 (87)
T PRK02886 7 GIIVWLHSL------KQA-KQLRKFGNVHYVSKRLKYA-VLYCDMEQVEDIMNKLSSLPF 58 (87)
T ss_pred EEEEEEeec------HhH-HHHhhcCcEEEEeccccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 345677655 232 3346899998776666676 558899999999998887766
No 279
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=23.43 E-value=56 Score=24.24 Aligned_cols=19 Identities=32% Similarity=0.594 Sum_probs=15.2
Q ss_pred CCeeEEEEeCCEEEEEEcC
Q 014384 79 GKVDRVDMKSGFAFIYMDD 97 (425)
Q Consensus 79 G~V~~v~i~kg~aFV~F~~ 97 (425)
|+|+...-.+||+||+=.+
T Consensus 4 G~Vkwfn~~KGfGFI~~~~ 22 (74)
T PRK09937 4 GTVKWFNNAKGFGFICPEG 22 (74)
T ss_pred eEEEEEeCCCCeEEEeeCC
Confidence 7788777789999996554
No 280
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=23.40 E-value=50 Score=30.28 Aligned_cols=36 Identities=19% Similarity=0.419 Sum_probs=29.7
Q ss_pred CCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe
Q 014384 148 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR 184 (425)
Q Consensus 148 ~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~ 184 (425)
....+||+-|+ |-.++++.|..+..++|.+..+.+.
T Consensus 38 ~eKd~lfl~Nv-p~~~tee~lkr~vsqlg~vq~~~y~ 73 (261)
T KOG4008|consen 38 NEKDCLFLVNV-PLLSTEEHLKRFVSQLGHVQELLYN 73 (261)
T ss_pred ccccceeeecc-cccccHHHHHHHHHHhhhhhheecc
Confidence 44579999999 7888899999999999977666553
No 281
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=23.15 E-value=56 Score=23.69 Aligned_cols=49 Identities=22% Similarity=0.383 Sum_probs=28.8
Q ss_pred cCCeeEEEEeCCEEEEEEcCH-HHHH---HHHHhcCC-CeecCCCcEEEEEEeccc
Q 014384 78 YGKVDRVDMKSGFAFIYMDDE-RDAE---DAIRGLDR-TEFGRKGRRLRVEWTKHE 128 (425)
Q Consensus 78 ~G~V~~v~i~kg~aFV~F~~~-~~A~---~A~~~lng-~~ig~~gr~l~V~~a~~~ 128 (425)
.|+|+.....+||+||.=.+. +++- .|+. .+| ..+. .|..|..+.....
T Consensus 3 ~G~Vk~f~~~kGfGFI~~~~g~~dvfvH~s~~~-~~g~~~l~-~G~~V~f~~~~~~ 56 (68)
T TIGR02381 3 IGIVKWFNNAKGFGFICPEGVDGDIFAHYSTIQ-MDGYRTLK-AGQKVQFEVVQGP 56 (68)
T ss_pred CeEEEEEeCCCCeEEEecCCCCccEEEEHHHhh-hcCCCCCC-CCCEEEEEEEECC
Confidence 478888888899999987663 3321 2221 122 2222 5777666665544
No 282
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=23.13 E-value=1.7e+02 Score=22.91 Aligned_cols=49 Identities=12% Similarity=0.289 Sum_probs=31.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhc--------CCeeEEEE-------------eCC-EEEEEEcCHHHHHHHHH
Q 014384 56 PIFCGNFEYDARQSDLERLFRRY--------GKVDRVDM-------------KSG-FAFIYMDDERDAEDAIR 106 (425)
Q Consensus 56 ~l~V~nL~~~~t~~~L~~lF~~~--------G~V~~v~i-------------~kg-~aFV~F~~~~~A~~A~~ 106 (425)
++|| |.++++++++..+..++ |+|..+.- ..| |.++.|.-..++.+.++
T Consensus 10 ~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~ele 80 (97)
T CHL00123 10 TMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLE 80 (97)
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHH
Confidence 4555 46777777776665554 46666553 134 67889997777777664
No 283
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=23.07 E-value=1.4e+02 Score=26.57 Aligned_cols=63 Identities=10% Similarity=0.172 Sum_probs=40.8
Q ss_pred EEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEeccccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCC--------CCC
Q 014384 93 IYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPY--------HTR 164 (425)
Q Consensus 93 V~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~--------~~~ 164 (425)
+.|.+.++|...+ +-.|+.+ ....|.+.+.++.- ......|||+-+ .. .-.
T Consensus 47 ~I~qs~e~ai~~l-E~e~KlW--reteI~I~~g~p~V-----------------NE~TkkIYICPF-TGKVF~DNt~~nP 105 (238)
T PF10915_consen 47 IIFQSAEDAIRIL-EEEGKLW--RETEIKIQSGKPSV-----------------NEQTKKIYICPF-TGKVFGDNTHPNP 105 (238)
T ss_pred hhccCHHHHHHHH-HHhcchh--eeeeEEEecCCccc-----------------ccccceEEEcCC-cCccccCCCCCCh
Confidence 4689999999988 5678877 67778887765543 333456666544 21 222
Q ss_pred HHHHHhhhccCC
Q 014384 165 TRDLERHFEPYG 176 (425)
Q Consensus 165 ~~~L~~~f~~~G 176 (425)
++.|.+..++|-
T Consensus 106 QDAIYDWvSkCP 117 (238)
T PF10915_consen 106 QDAIYDWVSKCP 117 (238)
T ss_pred HHHHHHHHhhCC
Confidence 556667766664
No 284
>PRK02302 hypothetical protein; Provisional
Probab=23.06 E-value=1.7e+02 Score=22.66 Aligned_cols=53 Identities=17% Similarity=0.317 Sum_probs=37.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcCHHHHHHHHHhcCCCee
Q 014384 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 113 (425)
Q Consensus 53 ~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~kg~aFV~F~~~~~A~~A~~~lng~~i 113 (425)
..-.||+.+| .++ .-+.+||.|..+.-...|+ |-|-+.++|++.++.|....|
T Consensus 8 ~glIVyl~~~------k~~-r~LrkfG~I~Y~Skk~kYv-vlYvn~~~~e~~~~kl~~l~f 60 (89)
T PRK02302 8 IGLIVYLYYN------RDA-RKLSKYGDIVYHSKRSRYL-VLYVNKEDVEQKLEELSKLKF 60 (89)
T ss_pred eEEEEEEeec------HhH-HHHhhcCcEEEEeccccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 3446777655 232 3347899998776666677 568899999999998888766
No 285
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=22.78 E-value=1.1e+02 Score=22.34 Aligned_cols=27 Identities=11% Similarity=0.234 Sum_probs=22.0
Q ss_pred cEEEEEEcCHHHHHHHHHHcCCCccCC
Q 014384 186 NFAFVQYEVQEDATRALDATNMSKLTD 212 (425)
Q Consensus 186 g~afV~f~~~~~A~~A~~~l~g~~~~g 212 (425)
.+.+|.|.+..+|.+|-+.|....+..
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~ 28 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPV 28 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcE
Confidence 367899999999999998887665543
No 286
>PRK14998 cold shock-like protein CspD; Provisional
Probab=22.65 E-value=60 Score=24.00 Aligned_cols=20 Identities=30% Similarity=0.532 Sum_probs=16.1
Q ss_pred cCCeeEEEEeCCEEEEEEcC
Q 014384 78 YGKVDRVDMKSGFAFIYMDD 97 (425)
Q Consensus 78 ~G~V~~v~i~kg~aFV~F~~ 97 (425)
.|+|+.....+||+||.=.+
T Consensus 3 ~G~Vkwfn~~kGfGFI~~~~ 22 (73)
T PRK14998 3 TGTVKWFNNAKGFGFICPEG 22 (73)
T ss_pred CeEEEEEeCCCceEEEecCC
Confidence 37888888889999997655
No 287
>smart00457 MACPF membrane-attack complex / perforin.
Probab=22.08 E-value=1.5e+02 Score=26.19 Aligned_cols=28 Identities=11% Similarity=0.351 Sum_probs=22.6
Q ss_pred EcCCCCCCCHHHHHHHHhhcCC--eeEEEE
Q 014384 59 CGNFEYDARQSDLERLFRRYGK--VDRVDM 86 (425)
Q Consensus 59 V~nL~~~~t~~~L~~lF~~~G~--V~~v~i 86 (425)
+.+||...+...+..||..||+ |..+.+
T Consensus 30 l~~Lp~~~~~~~~~~fi~~yGTH~i~s~~~ 59 (194)
T smart00457 30 LRDLPDQYNRGAYARFIDKYGTHYITSATL 59 (194)
T ss_pred HHhCccccCHHHHHHHHHHhCCeEEEeeee
Confidence 3477888888899999999997 566666
No 288
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=21.72 E-value=3.3e+02 Score=29.21 Aligned_cols=69 Identities=7% Similarity=0.141 Sum_probs=53.6
Q ss_pred CceEEEcCC--CCCCCHHHHHHHHhhcCCe-----eEEEEeCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEec
Q 014384 54 MRPIFCGNF--EYDARQSDLERLFRRYGKV-----DRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 126 (425)
Q Consensus 54 ~~~l~V~nL--~~~~t~~~L~~lF~~~G~V-----~~v~i~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~ 126 (425)
+..+|| |+ ...++..+|..++..-+.| -.|.|...|.||+.... .|...+..|++..+ .|+.|.|+.+.
T Consensus 486 ~~~~~~-~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~~s~v~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~ 561 (629)
T PRK11634 486 MQLYRI-EVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKG-MPGEVLQHFTRTRI--LNKPMNMQLLG 561 (629)
T ss_pred CEEEEE-ecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeCCceEEEcChh-hHHHHHHHhccccc--cCCceEEEECC
Confidence 445655 44 4678899999888876644 46778899999998764 47788889999988 89999999774
No 289
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=21.61 E-value=59 Score=23.68 Aligned_cols=20 Identities=35% Similarity=0.606 Sum_probs=16.0
Q ss_pred cCCeeEEEEeCCEEEEEEcC
Q 014384 78 YGKVDRVDMKSGFAFIYMDD 97 (425)
Q Consensus 78 ~G~V~~v~i~kg~aFV~F~~ 97 (425)
.|+|+...-.+||+||+=.+
T Consensus 5 ~G~Vk~f~~~kGyGFI~~~~ 24 (69)
T PRK09507 5 KGNVKWFNESKGFGFITPED 24 (69)
T ss_pred ceEEEEEeCCCCcEEEecCC
Confidence 37788777789999998655
No 290
>PRK10943 cold shock-like protein CspC; Provisional
Probab=20.93 E-value=62 Score=23.57 Aligned_cols=20 Identities=35% Similarity=0.567 Sum_probs=15.8
Q ss_pred cCCeeEEEEeCCEEEEEEcC
Q 014384 78 YGKVDRVDMKSGFAFIYMDD 97 (425)
Q Consensus 78 ~G~V~~v~i~kg~aFV~F~~ 97 (425)
-|+|+...-.+||+||+=.+
T Consensus 5 ~G~Vk~f~~~kGfGFI~~~~ 24 (69)
T PRK10943 5 KGQVKWFNESKGFGFITPAD 24 (69)
T ss_pred ceEEEEEeCCCCcEEEecCC
Confidence 47787777789999998654
No 291
>cd04458 CSP_CDS Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription.
Probab=20.57 E-value=70 Score=22.62 Aligned_cols=20 Identities=45% Similarity=0.674 Sum_probs=16.0
Q ss_pred cCCeeEEEEeCCEEEEEEcC
Q 014384 78 YGKVDRVDMKSGFAFIYMDD 97 (425)
Q Consensus 78 ~G~V~~v~i~kg~aFV~F~~ 97 (425)
.|+|+.+...+||+||.=.+
T Consensus 2 ~G~Vk~~~~~kGfGFI~~~~ 21 (65)
T cd04458 2 TGTVKWFDDEKGFGFITPDD 21 (65)
T ss_pred cEEEEEEECCCCeEEEecCC
Confidence 47777777779999998776
No 292
>PRK15463 cold shock-like protein CspF; Provisional
Probab=20.49 E-value=64 Score=23.63 Aligned_cols=20 Identities=40% Similarity=0.396 Sum_probs=16.1
Q ss_pred cCCeeEEEEeCCEEEEEEcC
Q 014384 78 YGKVDRVDMKSGFAFIYMDD 97 (425)
Q Consensus 78 ~G~V~~v~i~kg~aFV~F~~ 97 (425)
.|+|+...-.+||+||+=.+
T Consensus 6 ~G~Vk~fn~~kGfGFI~~~~ 25 (70)
T PRK15463 6 TGIVKTFDGKSGKGLITPSD 25 (70)
T ss_pred eEEEEEEeCCCceEEEecCC
Confidence 47888777789999998655
No 293
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=20.44 E-value=3.7e+02 Score=20.06 Aligned_cols=48 Identities=21% Similarity=0.412 Sum_probs=39.0
Q ss_pred CCCCCHHHHHhhh-ccCCcEEEEEEeccEEEEEEcCHHHHHHHHHHcCC
Q 014384 160 PYHTRTRDLERHF-EPYGKIISVRIRRNFAFVQYEVQEDATRALDATNM 207 (425)
Q Consensus 160 p~~~~~~~L~~~f-~~~G~v~~v~~~~g~afV~f~~~~~A~~A~~~l~g 207 (425)
+..+.-+||.+.. ..||...++......-.|-..+++|..+|++.++.
T Consensus 17 ~RPvkf~dl~~kv~~afGq~mdl~ytn~eL~iPl~~Q~DLDkAie~ld~ 65 (79)
T cd06405 17 PRPVKFKDLQQKVTTAFGQPMDLHYTNNELLIPLKNQEDLDRAIELLDR 65 (79)
T ss_pred CCCccHHHHHHHHHHHhCCeeeEEEecccEEEeccCHHHHHHHHHHHcc
Confidence 4455566666554 57999999999888888999999999999998876
No 294
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.10 E-value=66 Score=29.13 Aligned_cols=32 Identities=31% Similarity=0.400 Sum_probs=19.3
Q ss_pred HHHHHHHhh-cCCeeEEEEeCCEEEEEEcCHHH
Q 014384 69 SDLERLFRR-YGKVDRVDMKSGFAFIYMDDERD 100 (425)
Q Consensus 69 ~~L~~lF~~-~G~V~~v~i~kg~aFV~F~~~~~ 100 (425)
++|.+.|.+ ||+-..-.+.+-||||+|.+--+
T Consensus 89 edL~~EF~~~~~~~~~~~~~RPY~FieFD~~IQ 121 (216)
T KOG0862|consen 89 EDLAQEFDKSYGKNIIQPASRPYAFIEFDTFIQ 121 (216)
T ss_pred HHHHHHHHHhcccccCCccCCCeeEEehhHHHH
Confidence 455555543 56433223468999999997543
Done!