Query 014384
Match_columns 425
No_of_seqs 442 out of 3284
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 10:36:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014384.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014384hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 1.2E-31 4E-36 244.9 17.1 157 50-223 11-181 (213)
2 3md3_A Nuclear and cytoplasmic 100.0 1.5E-30 5.2E-35 226.9 18.6 150 55-221 1-165 (166)
3 1b7f_A Protein (SXL-lethal pro 100.0 5.5E-30 1.9E-34 224.1 20.7 149 53-220 2-168 (168)
4 1l3k_A Heterogeneous nuclear r 100.0 7.1E-30 2.4E-34 229.3 18.5 162 50-226 9-186 (196)
5 1fxl_A Paraneoplastic encephal 100.0 1.2E-29 4.2E-34 221.4 19.1 148 54-220 2-167 (167)
6 3tyt_A Heterogeneous nuclear r 100.0 1.1E-29 3.7E-34 230.2 18.8 166 52-220 2-204 (205)
7 2adc_A Polypyrimidine tract-bi 100.0 2.8E-29 9.7E-34 231.6 20.8 171 49-222 29-227 (229)
8 2qfj_A FBP-interacting repress 100.0 3.7E-29 1.3E-33 228.0 19.3 167 50-224 24-206 (216)
9 3pgw_A U1-A; protein-RNA compl 100.0 5.8E-29 2E-33 236.6 21.3 169 50-221 5-281 (282)
10 2yh0_A Splicing factor U2AF 65 100.0 5.8E-29 2E-33 223.7 20.1 168 53-224 3-195 (198)
11 2g4b_A Splicing factor U2AF 65 100.0 2.9E-29 1E-33 220.5 17.5 148 53-220 3-171 (172)
12 3nmr_A Cugbp ELAV-like family 100.0 8.7E-29 3E-33 217.8 18.6 153 53-221 2-175 (175)
13 2ghp_A U4/U6 snRNA-associated 100.0 7.3E-29 2.5E-33 237.1 19.6 193 10-223 81-291 (292)
14 1qm9_A Polypyrimidine tract-bi 100.0 5.3E-29 1.8E-33 224.3 16.9 167 53-222 2-196 (198)
15 3smz_A Protein raver-1, ribonu 100.0 9.1E-29 3.1E-33 235.5 18.6 191 11-224 58-265 (284)
16 1fje_B Nucleolin RBD12, protei 100.0 3.8E-29 1.3E-33 220.6 12.8 157 49-223 8-174 (175)
17 2cjk_A Nuclear polyadenylated 100.0 3.4E-29 1.2E-33 218.9 11.8 149 53-223 2-166 (167)
18 3sde_A Paraspeckle component 1 99.9 1.8E-27 6.2E-32 223.9 16.3 149 50-223 18-179 (261)
19 3smz_A Protein raver-1, ribonu 99.9 8.9E-27 3E-31 221.7 19.0 149 49-223 17-175 (284)
20 2ghp_A U4/U6 snRNA-associated 99.9 1.7E-26 6E-31 220.5 16.2 148 49-223 36-197 (292)
21 3pgw_S U1-70K; protein-RNA com 99.9 2.4E-21 8E-26 194.4 16.9 78 146-224 98-183 (437)
22 4f25_A Polyadenylate-binding p 99.8 4.8E-21 1.6E-25 157.0 10.1 103 53-166 4-112 (115)
23 2i2y_A Fusion protein consists 99.8 7.3E-21 2.5E-25 163.5 10.3 132 88-223 13-148 (150)
24 2kn4_A Immunoglobulin G-bindin 99.8 2.9E-19 9.9E-24 154.7 12.0 132 87-224 12-151 (158)
25 4fxv_A ELAV-like protein 1; RN 99.8 7.8E-19 2.7E-23 139.7 10.2 75 51-127 16-98 (99)
26 2hvz_A Splicing factor, argini 99.8 7E-19 2.4E-23 140.5 8.1 97 55-159 1-100 (101)
27 3pgw_S U1-70K; protein-RNA com 99.8 3.4E-17 1.2E-21 164.2 21.3 76 52-129 100-183 (437)
28 3r27_A HnRNP L, heterogeneous 99.8 2.7E-18 9.2E-23 135.6 9.4 80 50-129 17-98 (100)
29 2wbr_A GW182, gawky, LD47780P; 99.8 2.2E-18 7.4E-23 131.4 8.3 72 53-126 6-79 (89)
30 2dnq_A RNA-binding protein 4B; 99.7 6.2E-18 2.1E-22 132.0 11.0 77 51-129 5-81 (90)
31 1sjq_A Polypyrimidine tract-bi 99.7 3.6E-18 1.2E-22 136.3 9.4 78 50-129 12-93 (105)
32 2dnp_A RNA-binding protein 14; 99.7 7.9E-18 2.7E-22 131.4 10.9 78 50-129 5-82 (90)
33 2dgt_A RNA-binding protein 30; 99.7 1.1E-17 3.7E-22 131.2 11.6 78 50-129 6-83 (92)
34 2dgu_A Heterogeneous nuclear r 99.7 1.5E-17 5.1E-22 133.3 12.7 77 52-130 9-85 (103)
35 3lqv_A PRE-mRNA branch site pr 99.7 1.4E-18 4.9E-23 142.1 6.7 100 51-177 5-109 (115)
36 2xnq_A Nuclear polyadenylated 99.7 9.6E-18 3.3E-22 132.9 10.8 78 49-128 17-95 (97)
37 2kvi_A Nuclear polyadenylated 99.7 4.8E-18 1.6E-22 134.3 8.7 78 50-129 6-84 (96)
38 3s8s_A Histone-lysine N-methyl 99.7 7.5E-18 2.6E-22 136.6 10.0 76 51-128 3-86 (110)
39 1x4d_A Matrin 3; structural ge 99.7 3.9E-18 1.3E-22 135.9 7.9 77 51-129 12-93 (102)
40 2lkz_A RNA-binding protein 5; 99.7 4.7E-18 1.6E-22 133.9 7.4 76 50-127 5-94 (95)
41 2cpd_A Apobec-1 stimulating pr 99.7 2.8E-17 9.6E-22 130.6 11.7 78 50-129 11-90 (99)
42 3mdf_A Peptidyl-prolyl CIS-tra 99.7 2.2E-17 7.6E-22 127.2 10.4 74 51-126 4-85 (85)
43 2jvo_A Nucleolar protein 3; nu 99.7 1.7E-17 5.7E-22 134.2 9.7 79 49-129 26-104 (108)
44 2cqi_A Nucleolysin TIAR; RNA r 99.7 4.1E-17 1.4E-21 130.6 12.0 78 50-129 11-94 (103)
45 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.8E-17 6.3E-22 144.5 10.6 131 93-224 11-153 (165)
46 4a8x_A RNA-binding protein wit 99.7 3.1E-17 1E-21 127.2 10.8 74 53-128 3-85 (88)
47 1x4a_A Splicing factor, argini 99.7 3E-17 1E-21 132.9 11.1 78 50-129 18-100 (109)
48 1x4c_A Splicing factor, argini 99.7 2.7E-17 9.2E-22 133.0 10.8 76 52-129 13-94 (108)
49 1whw_A Hypothetical protein ri 99.7 3.9E-17 1.3E-21 129.7 11.5 78 51-130 5-90 (99)
50 2lxi_A RNA-binding protein 10; 99.7 7.9E-18 2.7E-22 131.7 7.1 74 54-129 1-84 (91)
51 2cq1_A PTB-like protein L; RRM 99.7 3.3E-17 1.1E-21 130.5 10.7 78 50-129 11-92 (101)
52 1wex_A Hypothetical protein (r 99.7 2.5E-17 8.4E-22 132.0 10.1 79 51-129 12-92 (104)
53 2cq3_A RNA-binding protein 9; 99.7 4.5E-17 1.5E-21 130.4 11.5 78 50-129 11-94 (103)
54 3bs9_A Nucleolysin TIA-1 isofo 99.7 2.6E-17 8.8E-22 127.4 9.7 75 52-128 4-86 (87)
55 2ad9_A Polypyrimidine tract-bi 99.7 2.3E-17 7.9E-22 134.8 9.8 78 50-129 27-108 (119)
56 2dgx_A KIAA0430 protein; RRM d 99.7 2.8E-17 9.6E-22 129.9 9.9 76 52-129 7-91 (96)
57 1wf1_A RNA-binding protein RAL 99.7 3E-17 1E-21 133.1 10.2 77 51-129 24-101 (110)
58 2dgo_A Cytotoxic granule-assoc 99.7 8.2E-17 2.8E-21 131.6 12.8 80 50-131 11-98 (115)
59 2jvr_A Nucleolar protein 3; RN 99.7 2.2E-17 7.6E-22 133.7 9.1 77 50-128 24-105 (111)
60 2d9p_A Polyadenylate-binding p 99.7 3.3E-17 1.1E-21 131.2 9.6 78 50-129 11-94 (103)
61 2dnz_A Probable RNA-binding pr 99.7 7E-17 2.4E-21 127.2 11.2 76 52-129 3-86 (95)
62 2ytc_A PRE-mRNA-splicing facto 99.7 3.6E-17 1.2E-21 126.1 9.3 75 50-126 8-85 (85)
63 1x5u_A Splicing factor 3B subu 99.7 5.6E-17 1.9E-21 130.3 10.8 78 50-129 11-96 (105)
64 3md1_A Nuclear and cytoplasmic 99.7 4.8E-17 1.6E-21 124.7 9.9 73 54-128 1-81 (83)
65 2cq0_A Eukaryotic translation 99.7 3.8E-17 1.3E-21 130.9 9.6 78 50-129 11-96 (103)
66 2e5h_A Zinc finger CCHC-type a 99.7 4.4E-17 1.5E-21 128.1 9.9 75 50-126 12-94 (94)
67 1why_A Hypothetical protein ri 99.7 4.1E-17 1.4E-21 129.2 9.7 77 51-129 14-94 (97)
68 1x5s_A Cold-inducible RNA-bind 99.7 4.4E-17 1.5E-21 130.2 9.9 78 50-129 8-93 (102)
69 2x1f_A MRNA 3'-END-processing 99.7 5.4E-17 1.8E-21 128.2 10.3 75 53-129 1-83 (96)
70 2dnm_A SRP46 splicing factor; 99.7 3.7E-17 1.3E-21 130.9 9.5 78 50-129 9-94 (103)
71 1x5t_A Splicing factor 3B subu 99.7 4.3E-17 1.5E-21 128.7 9.7 76 52-129 3-87 (96)
72 2lea_A Serine/arginine-rich sp 99.7 9.7E-18 3.3E-22 141.2 6.2 118 9-129 3-128 (135)
73 2fy1_A RNA-binding motif prote 99.7 7.9E-17 2.7E-21 132.0 11.3 78 50-129 3-87 (116)
74 2cqc_A Arginine/serine-rich sp 99.7 4.3E-17 1.5E-21 128.4 9.3 76 50-127 11-94 (95)
75 2cqb_A Peptidyl-prolyl CIS-tra 99.7 4.5E-17 1.5E-21 130.1 9.5 78 50-129 8-93 (102)
76 1x4c_A Splicing factor, argini 99.7 2E-16 6.9E-21 127.8 13.3 77 146-223 11-93 (108)
77 2dnh_A Bruno-like 5, RNA bindi 99.7 6.7E-17 2.3E-21 129.8 10.3 77 51-129 12-98 (105)
78 2cqh_A IGF-II mRNA-binding pro 99.7 4.5E-17 1.5E-21 127.8 9.0 77 51-129 5-84 (93)
79 1x4g_A Nucleolysin TIAR; struc 99.7 1.1E-16 3.8E-21 129.5 11.5 79 49-129 20-100 (109)
80 1x4f_A Matrin 3; structural ge 99.7 1.6E-17 5.6E-22 134.2 6.5 77 51-129 22-103 (112)
81 2cpf_A RNA binding motif prote 99.7 9.3E-17 3.2E-21 127.3 10.8 76 52-129 3-89 (98)
82 2do4_A Squamous cell carcinoma 99.7 7.5E-17 2.6E-21 128.3 10.1 78 50-129 13-97 (100)
83 2cpj_A Non-POU domain-containi 99.7 4.6E-17 1.6E-21 129.3 8.8 77 51-129 12-90 (99)
84 2ywk_A Putative RNA-binding pr 99.7 5.2E-17 1.8E-21 127.9 8.9 76 50-127 12-94 (95)
85 2dgs_A DAZ-associated protein 99.7 9.8E-17 3.4E-21 127.4 10.6 77 50-129 6-90 (99)
86 1whx_A Hypothetical protein ri 99.7 4.9E-17 1.7E-21 132.1 8.7 76 52-129 8-85 (111)
87 3beg_B Splicing factor, argini 99.7 6.3E-17 2.2E-21 132.3 9.4 74 148-222 14-93 (115)
88 2cpz_A CUG triplet repeat RNA- 99.7 7.6E-17 2.6E-21 131.8 9.7 78 50-129 21-106 (115)
89 3ulh_A THO complex subunit 4; 99.7 9.4E-17 3.2E-21 129.4 10.1 75 50-126 25-106 (107)
90 2la4_A Nuclear and cytoplasmic 99.7 4.1E-17 1.4E-21 130.1 7.8 76 50-127 23-100 (101)
91 2err_A Ataxin-2-binding protei 99.7 6E-17 2E-21 131.2 8.9 77 50-128 25-107 (109)
92 1p27_B RNA-binding protein 8A; 99.7 7.7E-17 2.6E-21 129.7 9.5 77 51-129 20-104 (106)
93 2do0_A HnRNP M, heterogeneous 99.7 2.6E-16 8.8E-21 128.3 12.5 78 50-129 11-95 (114)
94 1x4h_A RNA-binding protein 28; 99.7 1.5E-16 5.2E-21 129.0 11.0 78 50-129 11-102 (111)
95 2dgv_A HnRNP M, heterogeneous 99.7 8.9E-17 3E-21 125.8 9.3 77 51-129 5-87 (92)
96 1oo0_B CG8781-PA, drosophila Y 99.7 1.3E-16 4.3E-21 129.4 10.2 78 50-129 22-107 (110)
97 2cqd_A RNA-binding region cont 99.7 2.8E-16 9.6E-21 128.6 12.3 77 50-129 13-97 (116)
98 3ns6_A Eukaryotic translation 99.7 3.7E-17 1.3E-21 130.2 6.8 75 52-128 4-93 (100)
99 1nu4_A U1A RNA binding domain; 99.7 1.4E-16 4.7E-21 126.0 9.9 78 50-129 4-90 (97)
100 2cph_A RNA binding motif prote 99.7 1.7E-16 5.7E-21 127.9 10.5 78 50-129 11-98 (107)
101 2a3j_A U1 small nuclear ribonu 99.7 9.7E-17 3.3E-21 133.2 9.1 77 51-129 26-111 (127)
102 1s79_A Lupus LA protein; RRM, 99.7 7.2E-17 2.5E-21 129.2 7.9 74 52-128 9-89 (103)
103 2jrs_A RNA-binding protein 39; 99.7 8.2E-17 2.8E-21 130.1 8.3 78 49-128 21-106 (108)
104 2la6_A RNA-binding protein FUS 99.7 1.1E-16 3.6E-21 127.2 8.9 75 50-126 9-99 (99)
105 2e5j_A Methenyltetrahydrofolat 99.7 7.7E-17 2.6E-21 127.6 8.0 77 50-129 15-95 (97)
106 3ex7_B RNA-binding protein 8A; 99.7 9.7E-17 3.3E-21 133.3 8.9 78 50-129 18-103 (126)
107 2div_A TRNA selenocysteine ass 99.7 9.6E-17 3.3E-21 127.4 8.4 77 51-129 6-95 (99)
108 3p5t_L Cleavage and polyadenyl 99.7 2.8E-17 9.6E-22 128.3 4.9 73 55-129 2-84 (90)
109 1h2v_Z 20 kDa nuclear CAP bind 99.7 2.3E-16 7.8E-21 136.2 11.0 78 50-129 35-120 (156)
110 2cpe_A RNA-binding protein EWS 99.7 1.7E-16 5.7E-21 129.3 9.6 78 50-129 11-104 (113)
111 2kn4_A Immunoglobulin G-bindin 99.7 1.2E-16 4.2E-21 138.1 9.3 77 51-129 67-151 (158)
112 2khc_A Testis-specific RNP-typ 99.7 1.1E-16 3.8E-21 131.4 8.5 75 50-126 36-118 (118)
113 2kxn_B Transformer-2 protein h 99.7 8E-17 2.7E-21 134.4 7.6 78 50-129 42-127 (129)
114 3ucg_A Polyadenylate-binding p 99.7 2.1E-16 7.1E-21 122.8 9.2 72 54-128 6-85 (89)
115 2dhg_A TRNA selenocysteine ass 99.7 1.5E-16 5E-21 127.6 8.6 79 50-130 5-92 (104)
116 2dgu_A Heterogeneous nuclear r 99.7 6.8E-16 2.3E-20 123.5 12.4 79 146-225 7-85 (103)
117 1u6f_A Tcubp1, RNA-binding pro 99.7 4.2E-16 1.5E-20 131.7 11.7 78 50-129 38-123 (139)
118 3s7r_A Heterogeneous nuclear r 99.7 2.9E-16 9.8E-21 121.6 9.8 74 49-125 6-87 (87)
119 2dng_A Eukaryotic translation 99.7 3.1E-16 1E-20 125.5 10.1 76 50-129 11-94 (103)
120 2nlw_A Eukaryotic translation 99.7 2.2E-16 7.6E-21 126.9 9.2 77 51-129 12-101 (105)
121 1wi8_A EIF-4B, eukaryotic tran 99.7 3E-16 1E-20 125.8 10.0 75 51-129 12-95 (104)
122 2dnq_A RNA-binding protein 4B; 99.7 6.8E-16 2.3E-20 120.3 11.4 78 147-225 5-82 (90)
123 3zzy_A Polypyrimidine tract-bi 99.7 4.3E-16 1.5E-20 128.9 10.7 77 51-129 25-107 (130)
124 4f02_A Polyadenylate-binding p 99.7 1.8E-16 6.2E-21 144.0 9.2 117 10-128 57-181 (213)
125 2cpi_A CCR4-NOT transcription 99.7 1.2E-16 4E-21 129.9 7.0 77 51-129 12-102 (111)
126 1p1t_A Cleavage stimulation fa 99.7 1.8E-16 6.3E-21 127.0 8.1 76 52-129 6-89 (104)
127 1x5p_A Negative elongation fac 99.7 6.8E-16 2.3E-20 122.1 11.0 76 50-129 11-88 (97)
128 2lea_A Serine/arginine-rich sp 99.7 5.6E-17 1.9E-21 136.5 5.0 116 89-224 5-128 (135)
129 2ek1_A RNA-binding protein 12; 99.7 1E-16 3.5E-21 126.2 6.2 75 51-127 12-94 (95)
130 3n9u_C Cleavage and polyadenyl 99.7 2.7E-16 9.2E-21 135.6 9.3 75 52-128 53-137 (156)
131 2cqp_A RNA-binding protein 12; 99.7 1.4E-16 4.7E-21 126.3 6.9 76 51-128 12-95 (98)
132 2kt5_A RNA and export factor-b 99.7 5.6E-16 1.9E-20 128.4 10.9 78 50-129 31-115 (124)
133 2cq4_A RNA binding motif prote 99.7 2.6E-16 9E-21 128.3 8.7 75 52-129 23-105 (114)
134 2dgp_A Bruno-like 4, RNA bindi 99.6 3.6E-16 1.2E-20 125.7 9.4 80 50-129 9-97 (106)
135 2cq2_A Hypothetical protein LO 99.6 3.4E-16 1.2E-20 126.6 9.2 80 50-129 21-107 (114)
136 4fxv_A ELAV-like protein 1; RN 99.6 4.5E-16 1.5E-20 123.6 9.7 74 148-222 17-98 (99)
137 2fc9_A NCL protein; structure 99.6 3.3E-16 1.1E-20 124.8 9.0 78 50-129 11-92 (101)
138 3beg_B Splicing factor, argini 99.6 1.8E-16 6.3E-21 129.6 7.6 73 52-126 14-92 (115)
139 2dh8_A DAZ-associated protein 99.6 2.5E-16 8.5E-21 126.5 7.9 77 50-129 12-96 (105)
140 2dgt_A RNA-binding protein 30; 99.6 9.6E-16 3.3E-20 120.0 11.0 78 146-224 6-83 (92)
141 1sjr_A Polypyrimidine tract-bi 99.6 5.8E-16 2E-20 132.9 10.5 79 51-129 43-125 (164)
142 2e5i_A Heterogeneous nuclear r 99.6 5.3E-16 1.8E-20 127.8 9.9 75 53-129 24-103 (124)
143 2dis_A Unnamed protein product 99.6 9.1E-16 3.1E-20 124.0 11.1 76 52-129 6-93 (109)
144 2cpd_A Apobec-1 stimulating pr 99.6 1.9E-15 6.3E-20 120.0 12.6 80 144-224 9-90 (99)
145 2rs2_A Musashi-1, RNA-binding 99.6 6.5E-16 2.2E-20 125.0 10.1 78 49-129 20-105 (109)
146 2mss_A Protein (musashi1); RNA 99.6 1.9E-16 6.7E-21 118.9 6.2 67 56-125 1-75 (75)
147 2jwn_A Embryonic polyadenylate 99.6 4.9E-16 1.7E-20 128.7 9.2 76 51-129 33-116 (124)
148 2g4b_A Splicing factor U2AF 65 99.6 4.1E-16 1.4E-20 136.2 9.1 114 10-126 51-172 (172)
149 1wg1_A KIAA1579 protein, homol 99.6 4E-16 1.4E-20 121.1 8.0 75 52-129 3-79 (88)
150 3r27_A HnRNP L, heterogeneous 99.6 9.2E-16 3.2E-20 121.0 10.0 78 145-223 16-97 (100)
151 2dnp_A RNA-binding protein 14; 99.6 1E-15 3.6E-20 119.2 10.2 77 147-224 6-82 (90)
152 2krb_A Eukaryotic translation 99.6 2.6E-16 8.8E-21 120.2 6.4 66 55-122 2-80 (81)
153 1x4e_A RNA binding motif, sing 99.6 7.5E-17 2.6E-21 124.3 3.4 73 52-126 3-83 (85)
154 1x4d_A Matrin 3; structural ge 99.6 1.5E-15 5.1E-20 120.8 11.0 77 147-224 12-93 (102)
155 2diu_A KIAA0430 protein; struc 99.6 3.8E-16 1.3E-20 120.2 7.2 73 53-129 7-85 (96)
156 2cpx_A Hypothetical protein FL 99.6 5.4E-16 1.8E-20 126.6 8.6 77 51-129 22-106 (115)
157 1rk8_A CG8781-PA, CG8781-PA pr 99.6 6.8E-16 2.3E-20 134.5 9.8 77 51-129 69-153 (165)
158 2kvi_A Nuclear polyadenylated 99.6 7E-16 2.4E-20 121.8 8.9 78 146-224 6-84 (96)
159 1x4b_A Heterogeneous nuclear r 99.6 9.6E-16 3.3E-20 125.4 9.9 75 52-129 25-107 (116)
160 2ki2_A SS-DNA binding protein 99.6 1.2E-16 4.1E-21 124.6 4.2 73 54-129 1-81 (90)
161 1fjc_A Nucleolin RBD2, protein 99.6 5.2E-16 1.8E-20 122.4 8.0 78 50-129 12-92 (96)
162 3md3_A Nuclear and cytoplasmic 99.6 5.7E-16 1.9E-20 134.2 8.9 114 11-126 42-165 (166)
163 2dgw_A Probable RNA-binding pr 99.6 1.1E-15 3.8E-20 119.3 9.6 76 50-129 6-88 (91)
164 2cqg_A TDP-43, TAR DNA-binding 99.6 1.6E-15 5.4E-20 121.3 10.7 76 50-129 11-94 (103)
165 1wf1_A RNA-binding protein RAL 99.6 6E-16 2E-20 125.4 8.4 76 147-223 24-100 (110)
166 2i2y_A Fusion protein consists 99.6 6.4E-16 2.2E-20 132.4 8.9 77 50-128 69-148 (150)
167 2m2b_A RNA-binding protein 10; 99.6 4.6E-16 1.6E-20 130.2 7.5 77 50-129 19-109 (131)
168 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 9.8E-16 3.4E-20 129.5 9.6 74 50-125 59-140 (140)
169 2d9p_A Polyadenylate-binding p 99.6 4.1E-15 1.4E-19 118.8 12.7 80 145-225 10-95 (103)
170 1uaw_A Mouse-musashi-1; RNP-ty 99.6 3.2E-16 1.1E-20 118.2 5.8 68 55-125 1-76 (77)
171 2fc8_A NCL protein; structure 99.6 1.2E-15 4.1E-20 121.7 9.4 78 50-129 11-93 (102)
172 2j76_E EIF-4B, EIF4B, eukaryot 99.6 3.2E-16 1.1E-20 124.8 6.0 76 49-128 14-98 (100)
173 2cq1_A PTB-like protein L; RRM 99.6 5.8E-15 2E-19 117.4 13.1 79 145-224 10-92 (101)
174 2xnq_A Nuclear polyadenylated 99.6 2E-15 6.9E-20 119.4 10.4 78 145-223 17-95 (97)
175 3d2w_A TAR DNA-binding protein 99.6 1.5E-15 5.1E-20 118.2 9.3 77 49-129 6-85 (89)
176 2cpy_A RNA-binding protein 12; 99.6 5.3E-16 1.8E-20 126.6 7.0 77 50-129 11-95 (114)
177 2cq3_A RNA-binding protein 9; 99.6 7E-15 2.4E-19 117.5 13.5 80 144-224 9-94 (103)
178 3ex7_B RNA-binding protein 8A; 99.6 2E-15 6.7E-20 125.4 10.5 80 145-225 17-104 (126)
179 2db1_A Heterogeneous nuclear r 99.6 6.9E-16 2.4E-20 126.7 7.5 76 50-128 13-98 (118)
180 2hgl_A HNRPF protein, heteroge 99.6 4.3E-16 1.5E-20 130.9 6.3 75 50-127 40-124 (136)
181 2wbr_A GW182, gawky, LD47780P; 99.6 1.6E-15 5.5E-20 115.6 8.8 74 148-222 5-80 (89)
182 2e44_A Insulin-like growth fac 99.6 1.3E-15 4.3E-20 120.2 8.5 75 52-128 13-92 (96)
183 1fj7_A Nucleolin RBD1, protein 99.6 3E-16 1E-20 125.1 4.9 76 51-129 14-96 (101)
184 1x4a_A Splicing factor, argini 99.6 4.9E-15 1.7E-19 119.7 12.1 80 144-224 16-100 (109)
185 1wg5_A Heterogeneous nuclear r 99.6 1.4E-15 4.7E-20 122.0 8.7 75 51-128 12-94 (104)
186 2e5g_A U6 snRNA-specific termi 99.6 1.9E-15 6.5E-20 118.8 9.3 75 52-129 6-83 (94)
187 2dnz_A Probable RNA-binding pr 99.6 5.8E-15 2E-19 116.1 12.0 77 148-225 3-87 (95)
188 3s8s_A Histone-lysine N-methyl 99.6 2.4E-15 8.2E-20 121.8 10.0 76 147-223 3-86 (110)
189 1wex_A Hypothetical protein (r 99.6 6.3E-15 2.2E-19 117.9 12.3 79 145-224 10-92 (104)
190 1b7f_A Protein (SXL-lethal pro 99.6 9.2E-16 3.1E-20 133.3 8.0 112 11-125 46-168 (168)
191 1why_A Hypothetical protein ri 99.6 5.5E-15 1.9E-19 116.8 11.5 80 144-224 11-94 (97)
192 2cq0_A Eukaryotic translation 99.6 8E-15 2.7E-19 117.2 12.5 79 145-224 10-96 (103)
193 2cqi_A Nucleolysin TIAR; RNA r 99.6 7.9E-15 2.7E-19 117.2 12.5 80 145-225 10-95 (103)
194 1x5o_A RNA binding motif, sing 99.6 1.9E-15 6.5E-20 123.2 8.9 79 50-128 21-112 (114)
195 2f3j_A RNA and export factor b 99.6 1.8E-15 6.1E-20 133.2 9.3 78 50-129 84-168 (177)
196 2hzc_A Splicing factor U2AF 65 99.6 2E-15 7E-20 116.6 8.6 70 52-124 4-86 (87)
197 3q2s_C Cleavage and polyadenyl 99.6 1.1E-15 3.6E-20 140.4 8.0 74 53-128 67-150 (229)
198 1sjq_A Polypyrimidine tract-bi 99.6 1.5E-15 5.1E-20 121.1 7.8 77 147-224 13-93 (105)
199 1l3k_A Heterogeneous nuclear r 99.6 2.8E-15 9.5E-20 133.7 10.4 118 10-130 55-185 (196)
200 2qfj_A FBP-interacting repress 99.6 5E-15 1.7E-19 134.2 12.2 117 10-129 70-206 (216)
201 2yh0_A Splicing factor U2AF 65 99.6 2E-15 6.8E-20 134.9 9.4 76 52-129 112-195 (198)
202 2cjk_A Nuclear polyadenylated 99.6 7.6E-16 2.6E-20 133.8 6.5 113 11-128 46-166 (167)
203 1wez_A HnRNP H', FTP-3, hetero 99.6 1.2E-15 3.9E-20 122.0 6.9 76 50-129 11-93 (102)
204 1x5s_A Cold-inducible RNA-bind 99.6 6.1E-15 2.1E-19 117.6 11.2 80 145-225 7-94 (102)
205 1wel_A RNA-binding protein 12; 99.6 6.2E-16 2.1E-20 128.2 5.5 75 51-128 22-104 (124)
206 1whw_A Hypothetical protein ri 99.6 8.5E-15 2.9E-19 116.1 11.9 78 147-225 5-90 (99)
207 1x5u_A Splicing factor 3B subu 99.6 7.9E-15 2.7E-19 117.6 11.8 81 144-225 9-97 (105)
208 2dgo_A Cytotoxic granule-assoc 99.6 1.8E-14 6.1E-19 117.5 14.0 82 144-226 9-98 (115)
209 4f25_A Polyadenylate-binding p 99.6 3.6E-15 1.2E-19 121.8 9.7 73 150-223 5-83 (115)
210 1iqt_A AUF1, heterogeneous nuc 99.6 8.9E-16 3E-20 115.2 5.6 67 56-125 1-75 (75)
211 2dnh_A Bruno-like 5, RNA bindi 99.6 1.3E-14 4.3E-19 116.4 12.7 79 146-225 11-99 (105)
212 2dgs_A DAZ-associated protein 99.6 1.2E-14 4.2E-19 115.2 12.5 78 146-225 6-91 (99)
213 3nmr_A Cugbp ELAV-like family 99.6 2.3E-15 8E-20 131.5 9.1 116 10-126 47-175 (175)
214 2do4_A Squamous cell carcinoma 99.6 9.7E-15 3.3E-19 116.0 11.8 79 145-224 12-97 (100)
215 2dgx_A KIAA0430 protein; RRM d 99.6 5.1E-15 1.8E-19 116.8 10.1 76 147-223 6-90 (96)
216 2fy1_A RNA-binding motif prote 99.6 1E-14 3.4E-19 119.3 12.1 77 147-224 4-87 (116)
217 2dnm_A SRP46 splicing factor; 99.6 6.1E-15 2.1E-19 117.9 10.5 79 145-224 8-94 (103)
218 2bz2_A Negative elongation fac 99.6 2.2E-15 7.6E-20 124.2 8.2 76 50-129 35-112 (121)
219 1fxl_A Paraneoplastic encephal 99.6 2E-15 6.8E-20 130.9 8.3 112 11-125 45-167 (167)
220 2e5h_A Zinc finger CCHC-type a 99.6 8.3E-15 2.8E-19 114.9 11.1 78 143-221 9-94 (94)
221 3egn_A RNA-binding protein 40; 99.6 1.5E-15 5.3E-20 129.0 7.3 77 51-129 42-131 (143)
222 3mdf_A Peptidyl-prolyl CIS-tra 99.6 6.1E-15 2.1E-19 113.4 9.9 74 147-221 4-85 (85)
223 1wi8_A EIF-4B, eukaryotic tran 99.6 1.1E-14 3.8E-19 116.6 11.7 79 144-225 9-96 (104)
224 3bs9_A Nucleolysin TIA-1 isofo 99.6 5.6E-15 1.9E-19 114.1 9.6 76 147-223 3-86 (87)
225 2jvo_A Nucleolar protein 3; nu 99.6 2.8E-15 9.6E-20 121.0 8.2 79 145-224 26-104 (108)
226 2lcw_A RNA-binding protein FUS 99.4 1.3E-16 4.3E-21 130.7 0.0 80 50-131 3-98 (116)
227 2ad9_A Polypyrimidine tract-bi 99.6 3.7E-15 1.3E-19 121.7 8.7 78 146-224 27-108 (119)
228 2cpj_A Non-POU domain-containi 99.6 1.1E-14 3.8E-19 115.4 11.3 80 144-224 9-90 (99)
229 1x4f_A Matrin 3; structural ge 99.6 7.9E-15 2.7E-19 118.4 10.5 79 145-224 20-103 (112)
230 1fje_B Nucleolin RBD12, protei 99.6 1.3E-15 4.3E-20 133.6 6.3 116 11-128 55-174 (175)
231 2cqb_A Peptidyl-prolyl CIS-tra 99.6 5.7E-15 1.9E-19 117.8 9.6 79 145-224 7-93 (102)
232 2dnn_A RNA-binding protein 12; 99.6 4.2E-15 1.4E-19 120.0 8.8 71 54-128 16-93 (109)
233 2jvr_A Nucleolar protein 3; RN 99.6 2E-15 7E-20 122.1 7.0 75 148-223 26-105 (111)
234 4a8x_A RNA-binding protein wit 99.6 9.5E-15 3.3E-19 113.0 10.5 74 149-223 3-85 (88)
235 2cpf_A RNA binding motif prote 99.6 8.9E-15 3E-19 115.8 10.5 76 148-224 3-89 (98)
236 2hgn_A Heterogeneous nuclear r 99.6 7.1E-16 2.4E-20 129.9 4.3 76 50-129 42-124 (139)
237 1x4h_A RNA-binding protein 28; 99.6 1.8E-14 6.1E-19 116.7 12.0 80 144-224 9-102 (111)
238 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.1E-14 3.6E-19 125.6 11.3 79 146-225 35-121 (156)
239 1x5t_A Splicing factor 3B subu 99.6 5.9E-15 2E-19 116.3 8.8 76 148-224 3-87 (96)
240 2cqc_A Arginine/serine-rich sp 99.6 9.7E-15 3.3E-19 114.7 9.9 79 143-222 8-94 (95)
241 3md1_A Nuclear and cytoplasmic 99.6 1.1E-14 3.9E-19 111.3 10.0 72 151-223 2-81 (83)
242 1p27_B RNA-binding protein 8A; 99.6 1.4E-14 4.6E-19 116.4 10.7 78 146-224 19-104 (106)
243 2dgv_A HnRNP M, heterogeneous 99.6 1E-14 3.5E-19 113.9 9.6 78 146-224 4-87 (92)
244 2cpz_A CUG triplet repeat RNA- 99.6 1E-14 3.4E-19 119.1 10.0 80 144-224 19-106 (115)
245 2cph_A RNA binding motif prote 99.6 2.6E-14 8.9E-19 114.9 12.2 81 144-225 9-99 (107)
246 2lmi_A GRSF-1, G-rich sequence 99.6 1.2E-15 4E-20 123.0 4.2 76 50-128 7-92 (107)
247 2x1f_A MRNA 3'-END-processing 99.6 9.8E-15 3.4E-19 115.1 9.5 75 149-224 1-83 (96)
248 2ytc_A PRE-mRNA-splicing facto 99.6 1.4E-14 4.7E-19 111.4 10.0 75 146-221 8-85 (85)
249 3ulh_A THO complex subunit 4; 99.6 1.4E-14 4.9E-19 116.5 10.3 76 145-221 24-106 (107)
250 1u6f_A Tcubp1, RNA-binding pro 99.6 3.6E-14 1.2E-18 119.8 13.4 79 145-224 37-123 (139)
251 1oo0_B CG8781-PA, drosophila Y 99.6 1.4E-14 4.9E-19 117.1 10.4 79 145-224 21-107 (110)
252 2cqh_A IGF-II mRNA-binding pro 99.6 7E-15 2.4E-19 115.2 8.2 77 147-224 5-84 (93)
253 1x4g_A Nucleolysin TIAR; struc 99.6 1.4E-14 4.9E-19 117.0 10.2 77 147-224 22-100 (109)
254 2dng_A Eukaryotic translation 99.6 3.6E-14 1.2E-18 113.4 12.4 78 144-224 9-94 (103)
255 2do0_A HnRNP M, heterogeneous 99.6 7.5E-14 2.6E-18 113.6 14.2 78 145-223 10-94 (114)
256 3pgw_A U1-A; protein-RNA compl 99.6 1.2E-14 4E-19 137.6 10.6 72 53-126 206-281 (282)
257 2xs2_A Deleted in azoospermia- 99.6 3.2E-15 1.1E-19 119.3 5.6 74 52-129 7-87 (102)
258 2cpi_A CCR4-NOT transcription 99.5 2.4E-14 8.4E-19 116.1 10.9 80 144-224 9-102 (111)
259 2la6_A RNA-binding protein FUS 99.5 2.1E-14 7.2E-19 113.9 10.1 78 143-221 6-99 (99)
260 1wf0_A TDP-43, TAR DNA-binding 99.5 5.6E-15 1.9E-19 114.6 6.5 74 52-129 3-79 (88)
261 2cpe_A RNA-binding protein EWS 99.5 2.1E-14 7.1E-19 116.8 10.3 80 145-225 10-105 (113)
262 2dgp_A Bruno-like 4, RNA bindi 99.5 2.2E-14 7.4E-19 115.2 10.2 80 145-225 8-98 (106)
263 1whx_A Hypothetical protein ri 99.5 1.4E-14 4.7E-19 117.5 8.9 74 149-223 9-84 (111)
264 2err_A Ataxin-2-binding protei 99.5 1.1E-14 3.9E-19 117.7 8.3 79 144-223 23-107 (109)
265 1x5p_A Negative elongation fac 99.5 7.2E-14 2.5E-18 110.3 12.6 77 145-224 10-88 (97)
266 2e5j_A Methenyltetrahydrofolat 99.5 2E-14 7E-19 113.5 9.4 77 145-223 14-94 (97)
267 2fc9_A NCL protein; structure 99.5 3.1E-14 1.1E-18 113.3 10.5 78 146-224 11-92 (101)
268 2cqd_A RNA-binding region cont 99.5 6.9E-14 2.4E-18 114.2 12.8 79 143-223 10-96 (116)
269 2jrs_A RNA-binding protein 39; 99.5 3E-14 1E-18 115.0 10.4 78 145-223 21-106 (108)
270 2ywk_A Putative RNA-binding pr 99.5 1.5E-14 5.2E-19 113.6 8.4 77 145-222 11-94 (95)
271 2hvz_A Splicing factor, argini 99.5 9.6E-15 3.3E-19 116.3 7.3 73 151-224 1-76 (101)
272 2dhg_A TRNA selenocysteine ass 99.5 2.2E-14 7.6E-19 114.7 9.4 79 146-225 5-92 (104)
273 2a3j_A U1 small nuclear ribonu 99.5 2.2E-14 7.6E-19 119.0 9.6 77 146-223 25-110 (127)
274 1nu4_A U1A RNA binding domain; 99.5 2.2E-14 7.7E-19 113.1 9.2 78 146-224 4-90 (97)
275 2lkz_A RNA-binding protein 5; 99.5 9.6E-15 3.3E-19 114.8 7.0 75 147-222 6-94 (95)
276 2dha_A FLJ20171 protein; RRM d 99.5 8.1E-15 2.8E-19 120.8 6.8 74 51-127 20-104 (123)
277 2fc8_A NCL protein; structure 99.5 4.3E-14 1.5E-18 112.6 10.9 81 144-225 9-94 (102)
278 2lxi_A RNA-binding protein 10; 99.5 3.5E-15 1.2E-19 116.6 4.4 74 150-224 1-84 (91)
279 2kxn_B Transformer-2 protein h 99.5 2.1E-14 7.1E-19 119.7 8.8 80 144-224 40-127 (129)
280 2adc_A Polypyrimidine tract-bi 99.5 1.4E-14 4.9E-19 132.9 8.5 75 52-128 149-228 (229)
281 3ns6_A Eukaryotic translation 99.5 1.1E-14 3.7E-19 115.8 6.7 75 148-223 4-93 (100)
282 2khc_A Testis-specific RNP-typ 99.5 3.9E-14 1.3E-18 116.1 10.1 76 145-221 35-118 (118)
283 2hgm_A HNRPF protein, heteroge 99.5 1.4E-14 4.8E-19 119.8 7.4 75 50-128 38-121 (126)
284 3u1l_A PRE-mRNA-splicing facto 99.5 1.4E-14 4.7E-19 132.6 7.9 80 50-129 130-230 (240)
285 2diu_A KIAA0430 protein; struc 99.5 3.3E-14 1.1E-18 109.4 8.6 76 147-225 5-86 (96)
286 2la4_A Nuclear and cytoplasmic 99.5 1.5E-14 5.2E-19 115.1 6.9 75 147-222 24-100 (101)
287 2cq2_A Hypothetical protein LO 99.5 2.7E-14 9.2E-19 115.4 8.3 79 146-225 21-108 (114)
288 2cpx_A Hypothetical protein FL 99.5 4.8E-14 1.6E-18 114.9 9.6 79 145-224 20-106 (115)
289 2dh8_A DAZ-associated protein 99.5 3.2E-14 1.1E-18 114.0 8.3 80 144-225 10-97 (105)
290 1qm9_A Polypyrimidine tract-bi 99.5 1.5E-14 5E-19 129.5 6.8 75 52-128 118-197 (198)
291 3lqv_A PRE-mRNA branch site pr 99.5 6.2E-14 2.1E-18 114.3 9.9 76 147-223 5-85 (115)
292 2cqp_A RNA-binding protein 12; 99.5 3.6E-14 1.2E-18 112.2 8.3 77 146-223 11-95 (98)
293 2nlw_A Eukaryotic translation 99.5 3.7E-14 1.3E-18 113.8 8.4 77 146-223 11-100 (105)
294 2div_A TRNA selenocysteine ass 99.5 3.2E-14 1.1E-18 112.7 7.2 77 146-223 5-94 (99)
295 1s79_A Lupus LA protein; RRM, 99.5 4.7E-14 1.6E-18 112.7 8.1 73 148-222 9-88 (103)
296 3p5t_L Cleavage and polyadenyl 99.5 1.1E-14 3.8E-19 113.4 4.3 73 151-224 2-84 (90)
297 2cqg_A TDP-43, TAR DNA-binding 99.5 2.2E-13 7.5E-18 108.7 11.6 78 145-225 10-95 (103)
298 2dit_A HIV TAT specific factor 99.5 1.4E-13 4.9E-18 111.7 10.5 78 50-129 11-103 (112)
299 2pe8_A Splicing factor 45; RRM 99.5 1.3E-13 4.6E-18 110.4 10.0 77 50-128 4-94 (105)
300 3s7r_A Heterogeneous nuclear r 99.5 1.4E-13 4.7E-18 106.3 9.8 73 146-220 7-87 (87)
301 2kt5_A RNA and export factor-b 99.5 1.2E-13 4.2E-18 114.2 9.9 78 145-223 30-114 (124)
302 3ucg_A Polyadenylate-binding p 99.5 8.4E-14 2.9E-18 107.9 8.4 72 150-223 6-85 (89)
303 1p1t_A Cleavage stimulation fa 99.5 4.5E-14 1.5E-18 112.9 6.9 76 148-224 6-89 (104)
304 2dgw_A Probable RNA-binding pr 99.5 1.7E-13 5.7E-18 106.8 10.0 75 147-224 7-88 (91)
305 2j8a_A Histone-lysine N-methyl 99.5 5.6E-14 1.9E-18 114.3 7.3 71 54-126 2-94 (136)
306 2ek1_A RNA-binding protein 12; 99.5 3E-14 1E-18 112.0 5.5 75 147-222 12-94 (95)
307 1wg5_A Heterogeneous nuclear r 99.5 3E-13 1E-17 108.2 11.5 77 146-224 11-95 (104)
308 3zzy_A Polypyrimidine tract-bi 99.5 1.5E-13 5.1E-18 113.6 9.9 72 151-223 29-106 (130)
309 1fjc_A Nucleolin RBD2, protein 99.5 7.1E-14 2.4E-18 110.0 7.7 78 146-224 12-92 (96)
310 1x5o_A RNA binding motif, sing 99.5 3.2E-13 1.1E-17 109.8 11.7 78 145-223 20-112 (114)
311 2dis_A Unnamed protein product 99.5 8E-14 2.7E-18 112.4 8.0 77 147-224 5-93 (109)
312 2e5i_A Heterogeneous nuclear r 99.5 2.9E-13 9.9E-18 111.3 11.4 75 148-223 21-102 (124)
313 2e44_A Insulin-like growth fac 99.5 2.1E-13 7.3E-18 107.3 10.2 76 147-223 12-92 (96)
314 2krb_A Eukaryotic translation 99.5 4.8E-14 1.6E-18 107.5 6.2 66 151-217 2-80 (81)
315 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 2E-13 6.9E-18 115.1 10.7 76 144-220 57-140 (140)
316 1x4e_A RNA binding motif, sing 99.5 2.9E-14 9.9E-19 109.6 5.0 72 148-220 3-82 (85)
317 1wez_A HnRNP H', FTP-3, hetero 99.5 1.8E-13 6.2E-18 109.1 9.8 77 145-224 10-93 (102)
318 3n9u_C Cleavage and polyadenyl 99.5 9.8E-14 3.3E-18 119.5 8.8 74 149-223 54-137 (156)
319 2hgl_A HNRPF protein, heteroge 99.5 5.9E-14 2E-18 117.8 7.1 77 145-223 39-125 (136)
320 1x4b_A Heterogeneous nuclear r 99.5 1.1E-13 3.6E-18 113.1 8.6 76 148-225 25-108 (116)
321 2jwn_A Embryonic polyadenylate 99.5 1.7E-13 5.9E-18 113.2 9.7 72 150-223 36-115 (124)
322 2e5g_A U6 snRNA-specific termi 99.5 2.2E-13 7.6E-18 106.8 9.8 75 148-224 6-83 (94)
323 2dnl_A Cytoplasmic polyadenyla 99.5 9.6E-14 3.3E-18 113.1 8.0 70 51-125 5-85 (114)
324 2j76_E EIF-4B, EIF4B, eukaryot 99.5 5.6E-14 1.9E-18 111.7 6.3 76 145-223 14-98 (100)
325 2voo_A Lupus LA protein; RNA-b 99.5 1.3E-13 4.4E-18 123.1 9.4 74 53-129 108-188 (193)
326 1wg1_A KIAA1579 protein, homol 99.5 1E-13 3.6E-18 107.3 7.7 73 149-223 4-78 (88)
327 2cq4_A RNA binding motif prote 99.5 7.8E-14 2.7E-18 113.5 7.1 73 149-223 24-104 (114)
328 2rs2_A Musashi-1, RNA-binding 99.4 2.5E-13 8.7E-18 109.6 9.4 77 146-224 21-105 (109)
329 2db1_A Heterogeneous nuclear r 99.4 1.6E-13 5.6E-18 112.4 8.0 77 145-223 12-98 (118)
330 1sjr_A Polypyrimidine tract-bi 99.4 2.2E-13 7.5E-18 116.9 9.0 73 150-223 46-124 (164)
331 3sde_A Paraspeckle component 1 99.4 1.5E-13 5.3E-18 128.6 8.3 113 10-129 58-180 (261)
332 2hgn_A Heterogeneous nuclear r 99.4 3.4E-14 1.1E-18 119.7 3.2 117 88-224 1-124 (139)
333 2mss_A Protein (musashi1); RNA 99.4 8.2E-14 2.8E-18 104.4 5.0 67 152-220 1-75 (75)
334 2cpy_A RNA-binding protein 12; 99.4 1.9E-13 6.6E-18 111.3 7.6 77 146-224 11-95 (114)
335 1wel_A RNA-binding protein 12; 99.4 8.7E-14 3E-18 115.1 5.6 77 145-223 20-104 (124)
336 2m2b_A RNA-binding protein 10; 99.4 1.6E-13 5.5E-18 114.6 7.0 77 145-223 18-108 (131)
337 2ki2_A SS-DNA binding protein 99.4 6.5E-14 2.2E-18 108.9 4.2 72 151-224 2-81 (90)
338 3tyt_A Heterogeneous nuclear r 99.4 4.2E-13 1.4E-17 121.0 9.9 76 148-223 2-80 (205)
339 1uaw_A Mouse-musashi-1; RNP-ty 99.4 1.3E-13 4.3E-18 103.8 5.2 68 151-220 1-76 (77)
340 2bz2_A Negative elongation fac 99.4 4.5E-13 1.5E-17 110.3 8.8 77 145-224 34-112 (121)
341 2lcw_A RNA-binding protein FUS 99.1 1.6E-14 5.6E-19 118.0 0.0 78 147-225 4-97 (116)
342 2hzc_A Splicing factor U2AF 65 99.4 4.5E-13 1.6E-17 103.2 7.9 69 148-218 4-85 (87)
343 2f3j_A RNA and export factor b 99.4 4.4E-13 1.5E-17 117.9 8.8 77 146-223 84-167 (177)
344 1fj7_A Nucleolin RBD1, protein 99.4 1.2E-13 4E-18 109.9 4.5 76 147-224 14-96 (101)
345 2dnn_A RNA-binding protein 12; 99.4 3.8E-13 1.3E-17 108.4 7.5 72 149-223 15-93 (109)
346 3egn_A RNA-binding protein 40; 99.4 3.2E-13 1.1E-17 114.5 7.4 76 147-223 42-130 (143)
347 3d2w_A TAR DNA-binding protein 99.4 7.7E-13 2.6E-17 102.7 8.7 74 146-224 7-85 (89)
348 3q2s_C Cleavage and polyadenyl 99.4 3.2E-13 1.1E-17 123.8 7.6 74 149-223 67-150 (229)
349 3tht_A Alkylated DNA repair pr 99.4 5.6E-13 1.9E-17 128.4 8.9 79 49-127 13-98 (345)
350 2lmi_A GRSF-1, G-rich sequence 99.4 2.6E-13 9E-18 109.1 5.4 76 146-223 7-92 (107)
351 2dit_A HIV TAT specific factor 99.4 3.2E-12 1.1E-16 103.6 11.4 80 145-225 10-104 (112)
352 3v4m_A Splicing factor U2AF 65 99.4 1.2E-12 4E-17 104.9 8.3 75 52-128 3-97 (105)
353 1wf0_A TDP-43, TAR DNA-binding 99.4 4.6E-13 1.6E-17 103.6 5.5 74 148-224 3-79 (88)
354 3u1l_A PRE-mRNA-splicing facto 99.3 1.4E-12 4.9E-17 119.2 8.4 77 147-224 131-230 (240)
355 2d9o_A DNAJ (HSP40) homolog, s 99.3 4.7E-12 1.6E-16 100.1 9.9 62 64-129 27-91 (100)
356 2xs2_A Deleted in azoospermia- 99.3 1E-12 3.5E-17 104.6 6.0 74 148-224 7-87 (102)
357 2pe8_A Splicing factor 45; RRM 99.3 3.8E-12 1.3E-16 101.8 9.3 76 147-222 5-93 (105)
358 1iqt_A AUF1, heterogeneous nuc 99.3 3.6E-13 1.2E-17 100.8 2.4 67 152-220 1-75 (75)
359 2hgm_A HNRPF protein, heteroge 99.3 2.4E-12 8.3E-17 106.3 6.8 75 146-223 38-121 (126)
360 1jmt_A Splicing factor U2AF 35 99.3 6.1E-13 2.1E-17 106.3 3.1 65 59-125 20-103 (104)
361 3ue2_A Poly(U)-binding-splicin 99.3 6.7E-12 2.3E-16 102.5 9.1 77 50-128 16-109 (118)
362 2dha_A FLJ20171 protein; RRM d 99.3 1.2E-12 4.1E-17 107.8 4.4 74 148-223 21-105 (123)
363 3s6e_A RNA-binding protein 39; 99.3 7.9E-12 2.7E-16 101.3 8.9 76 51-128 4-93 (114)
364 2voo_A Lupus LA protein; RNA-b 99.3 1.9E-11 6.4E-16 109.0 11.9 71 150-222 109-186 (193)
365 3v4m_A Splicing factor U2AF 65 99.3 1.3E-11 4.4E-16 98.7 8.2 77 147-223 2-97 (105)
366 2dnl_A Cytoplasmic polyadenyla 99.2 2.2E-11 7.7E-16 98.9 8.1 70 147-220 5-85 (114)
367 2d9o_A DNAJ (HSP40) homolog, s 99.2 1E-10 3.5E-15 92.4 10.2 62 161-224 27-91 (100)
368 3ue2_A Poly(U)-binding-splicin 99.2 1E-10 3.5E-15 95.4 9.3 74 149-222 19-108 (118)
369 3s6e_A RNA-binding protein 39; 99.2 1.2E-10 3.9E-15 94.4 9.1 77 147-223 4-93 (114)
370 3tht_A Alkylated DNA repair pr 99.1 7.6E-11 2.6E-15 113.5 8.3 76 146-221 14-97 (345)
371 2j8a_A Histone-lysine N-methyl 99.1 5.9E-11 2E-15 96.6 6.1 71 151-222 3-95 (136)
372 1jmt_A Splicing factor U2AF 35 99.1 1.2E-10 4.1E-15 92.9 7.6 64 156-220 21-103 (104)
373 1owx_A Lupus LA protein, SS-B, 99.1 2.7E-10 9.2E-15 92.5 8.8 75 50-126 14-94 (121)
374 2dnr_A Synaptojanin-1; RRM dom 99.1 2.9E-10 9.7E-15 86.7 7.7 73 53-128 6-86 (91)
375 1owx_A Lupus LA protein, SS-B, 99.1 9.4E-10 3.2E-14 89.3 10.7 78 144-222 12-95 (121)
376 2dnr_A Synaptojanin-1; RRM dom 99.1 5.9E-10 2E-14 84.9 8.5 77 146-223 3-86 (91)
377 1ufw_A Synaptojanin 2; RNP dom 98.9 5.6E-09 1.9E-13 79.9 7.6 73 51-126 12-93 (95)
378 1ufw_A Synaptojanin 2; RNP dom 98.8 9.2E-09 3.1E-13 78.7 5.8 75 145-220 10-92 (95)
379 3dxb_A Thioredoxin N-terminall 98.6 8.2E-08 2.8E-12 87.1 7.1 73 54-128 124-213 (222)
380 2l9w_A U4/U6 snRNA-associated- 98.5 4.7E-07 1.6E-11 70.6 9.1 71 51-123 18-95 (117)
381 3dxb_A Thioredoxin N-terminall 98.4 2.4E-06 8.2E-11 77.3 12.8 59 164-222 142-212 (222)
382 2l9w_A U4/U6 snRNA-associated- 98.2 3.8E-06 1.3E-10 65.5 7.1 69 150-219 21-96 (117)
383 1wey_A Calcipressin 1; structu 98.1 8E-06 2.7E-10 63.5 6.9 74 53-128 4-84 (104)
384 2dhx_A Poly (ADP-ribose) polym 98.1 2.5E-05 8.7E-10 60.4 9.4 71 52-125 6-81 (104)
385 1whv_A Poly(A)-specific ribonu 97.9 3.8E-05 1.3E-09 58.7 7.2 58 51-109 13-70 (100)
386 3ctr_A Poly(A)-specific ribonu 97.7 3.5E-05 1.2E-09 59.1 5.2 54 55-109 7-60 (101)
387 1uw4_A UPF3X; nonsense mediate 97.5 0.00028 9.5E-09 53.9 7.1 59 55-113 2-70 (91)
388 1wwh_A Nucleoporin 35, nucleop 97.5 0.00045 1.5E-08 55.2 8.3 73 51-126 21-95 (119)
389 1wey_A Calcipressin 1; structu 97.5 9.8E-05 3.4E-09 57.4 4.3 73 150-222 5-83 (104)
390 2dhx_A Poly (ADP-ribose) polym 97.1 0.0047 1.6E-07 47.7 10.0 72 149-222 7-83 (104)
391 1whv_A Poly(A)-specific ribonu 97.0 0.0039 1.4E-07 47.6 8.8 55 150-206 16-70 (100)
392 1wwh_A Nucleoporin 35, nucleop 96.9 0.0024 8.4E-08 50.9 7.1 71 147-220 21-94 (119)
393 2l08_A Regulator of nonsense t 96.7 0.0022 7.6E-08 49.2 5.5 60 54-113 9-78 (97)
394 3ctr_A Poly(A)-specific ribonu 96.7 0.0026 8.8E-08 48.7 5.3 54 151-206 7-60 (101)
395 1uw4_A UPF3X; nonsense mediate 96.2 0.024 8.1E-07 43.1 8.3 70 151-221 2-86 (91)
396 3p3d_A Nucleoporin 53; structu 96.1 0.011 3.9E-07 47.7 6.5 72 52-127 5-98 (132)
397 3p3d_A Nucleoporin 53; structu 95.4 0.016 5.6E-07 46.8 4.8 69 150-221 7-97 (132)
398 3pq1_A Poly(A) RNA polymerase; 95.3 0.0072 2.5E-07 60.0 2.9 55 51-106 50-107 (464)
399 2l08_A Regulator of nonsense t 94.2 0.089 3E-06 40.2 5.8 71 150-221 9-94 (97)
400 3d45_A Poly(A)-specific ribonu 93.7 0.12 4E-06 52.3 7.4 56 54-110 440-495 (507)
401 3pq1_A Poly(A) RNA polymerase; 91.2 0.1 3.4E-06 51.8 3.0 51 151-203 54-107 (464)
402 4eyt_A Telomerase associated p 87.8 5.7 0.00019 29.4 9.4 69 52-124 10-78 (129)
403 2g0c_A ATP-dependent RNA helic 84.2 1.8 6.3E-05 31.0 5.3 60 161-221 11-75 (76)
404 2g0c_A ATP-dependent RNA helic 83.6 2.6 9E-05 30.2 6.0 68 56-126 2-75 (76)
405 4eyt_A Telomerase associated p 82.5 9.7 0.00033 28.2 8.4 56 149-205 11-66 (129)
406 3d45_A Poly(A)-specific ribonu 81.9 3.2 0.00011 41.7 7.8 56 150-207 440-495 (507)
407 3ts2_A Protein LIN-28 homolog 66.4 0.94 3.2E-05 37.6 -0.7 30 68-97 1-30 (148)
408 2e5p_A Protein PHF1, PHD finge 61.9 3.5 0.00012 28.6 1.6 20 78-97 27-46 (68)
409 2m0o_A PHD finger protein 1; t 60.1 3.7 0.00013 29.3 1.6 21 78-98 44-64 (79)
410 2eqj_A Metal-response element- 54.9 5.4 0.00018 27.8 1.6 19 79-97 32-50 (66)
411 2e5q_A PHD finger protein 19; 53.6 2.5 8.6E-05 28.9 -0.2 20 79-98 26-45 (63)
412 4hcz_A PHD finger protein 1; p 49.6 7.6 0.00026 26.2 1.6 20 79-98 22-41 (58)
413 3lpe_A Putative transcription 48.5 44 0.0015 24.8 6.1 31 81-111 40-73 (92)
414 3ts2_A Protein LIN-28 homolog 47.8 4.5 0.00015 33.4 0.4 28 166-193 2-29 (148)
415 2yh5_A DAPX protein, BAMC; lip 37.2 1.4E+02 0.0047 23.6 7.7 97 55-173 14-111 (127)
416 2hpu_A NOSL protein; alpha bet 37.2 28 0.00096 29.4 3.8 94 8-110 19-132 (175)
417 4e8u_A Putative uncharacterize 33.8 55 0.0019 27.5 4.9 35 66-100 33-74 (172)
418 3lpe_A Putative transcription 33.5 77 0.0026 23.4 5.3 31 177-207 39-72 (92)
419 2xk0_A Polycomb protein PCL; t 32.8 19 0.00065 25.1 1.6 18 79-98 34-51 (69)
420 3fry_A Probable copper-exporti 31.9 91 0.0031 21.0 5.3 52 55-107 7-60 (73)
421 2cu1_A Mitogen-activated prote 24.8 45 0.0015 25.2 2.5 49 160-208 25-74 (103)
422 3cam_A Cold-shock domain famil 24.2 27 0.00094 24.2 1.2 20 78-97 3-22 (67)
423 2k5n_A Putative cold-shock pro 23.6 34 0.0011 24.4 1.6 21 78-98 4-24 (74)
424 2npt_B Mitogen-activated prote 23.2 1.1E+02 0.0037 22.8 4.3 48 160-207 37-85 (100)
425 3a0j_A Cold shock protein; OB- 22.8 30 0.001 24.5 1.2 20 78-97 3-22 (73)
426 3h7h_B Transcription elongatio 22.5 85 0.0029 24.0 3.9 32 81-112 41-75 (106)
427 1g6p_A Cold shock protein TMCS 22.4 31 0.0011 23.8 1.2 19 79-97 3-21 (66)
428 2kcm_A Cold shock domain famil 22.2 38 0.0013 24.1 1.6 20 79-98 3-22 (74)
429 4a4j_A Pacszia, cation-transpo 21.9 1.6E+02 0.0053 19.2 5.0 51 55-105 4-59 (69)
430 3aqq_A Calcium-regulated heat 21.1 38 0.0013 27.7 1.6 20 78-97 64-83 (147)
431 3dxs_X Copper-transporting ATP 20.5 1.9E+02 0.0067 19.1 6.2 53 55-107 4-62 (74)
432 1h95_A CSD, Y-box binding prot 20.1 37 0.0013 24.5 1.2 20 78-97 10-29 (79)
433 2jrh_A Mitogen-activated prote 20.0 1.2E+02 0.0042 22.3 3.9 48 160-207 21-69 (94)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=1.2e-31 Score=244.88 Aligned_cols=157 Identities=23% Similarity=0.436 Sum_probs=138.9
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 121 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~ 121 (425)
...++++|||+|||+++|+++|.++|++||+|..|.|. +|||||+|.+.++|.+||..||+..+ .|+.|.
T Consensus 11 p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~--~g~~i~ 88 (213)
T 4f02_A 11 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVI--KGKPVR 88 (213)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhc--CCcccc
Confidence 34567899999999999999999999999999999983 68999999999999999999999999 899999
Q ss_pred EEEeccccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe------ccEEEEEEcCH
Q 014384 122 VEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR------RNFAFVQYEVQ 195 (425)
Q Consensus 122 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~------~g~afV~f~~~ 195 (425)
|.++...... ......+|||+|| +..+++++|+++|.+||.|..|.|+ +|||||+|.+.
T Consensus 89 ~~~~~~~~~~--------------~~~~~~~l~v~nl-~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~ 153 (213)
T 4f02_A 89 IMWSQRDPSL--------------RKSGVGNIFIKNL-DKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQ 153 (213)
T ss_dssp EEECCCCTHH--------------HHHCTTEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSH
T ss_pred cccccccccc--------------cccccccceECCc-ccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCH
Confidence 9998654311 1123468999999 8899999999999999999999985 68999999999
Q ss_pred HHHHHHHHHcCCCccCCeEEEEEEeeeC
Q 014384 196 EDATRALDATNMSKLTDRVISVEYAVRD 223 (425)
Q Consensus 196 ~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 223 (425)
++|.+|++.|||..|+|+.|.|.+|..+
T Consensus 154 ~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 154 EAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred HHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 9999999999999999999999999764
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.5e-30 Score=226.93 Aligned_cols=150 Identities=20% Similarity=0.444 Sum_probs=138.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEecc
Q 014384 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKH 127 (425)
Q Consensus 55 ~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~-------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~ 127 (425)
++|||+|||+++|+++|.++|++||+|..|.|. +|||||+|.+.++|.+|+..|||..| .|+.|.|.++..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQI--ENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCcc--CCCeeEEEEcCC
Confidence 589999999999999999999999999999983 68999999999999999999999999 899999999875
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHH
Q 014384 128 ERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDAT 199 (425)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~ 199 (425)
... ....+..+|||+|| |..+++++|+++|++||.|..+.+. +|+|||+|.+.++|.
T Consensus 79 ~~~--------------~~~~~~~~l~v~nl-~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~ 143 (166)
T 3md3_A 79 SQQ--------------SSSDDTFNLFVGDL-NVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQ 143 (166)
T ss_dssp CCC--------------CCCTTCEEEEEESC-CTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHH
T ss_pred CCC--------------CCCCCCceEEECCC-CCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHH
Confidence 431 23445789999999 8899999999999999999999985 569999999999999
Q ss_pred HHHHHcCCCccCCeEEEEEEee
Q 014384 200 RALDATNMSKLTDRVISVEYAV 221 (425)
Q Consensus 200 ~A~~~l~g~~~~g~~i~v~~a~ 221 (425)
+|+..|||..|+|+.|.|.||.
T Consensus 144 ~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 144 NAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp HHHHHHTTCEETTEECEEEESC
T ss_pred HHHHHhCCCccCCcEEEEEecC
Confidence 9999999999999999999985
No 3
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=5.5e-30 Score=224.12 Aligned_cols=149 Identities=27% Similarity=0.460 Sum_probs=136.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEE
Q 014384 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 124 (425)
Q Consensus 53 ~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~ 124 (425)
..++|||+|||+++|+++|.++|+.||.|..|.|. +|||||+|.+.++|.+|+..|||..| .|+.|.|.|
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~--~g~~l~v~~ 79 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITV--RNKRLKVSY 79 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEe--CCcEEEEEe
Confidence 46899999999999999999999999999999982 58999999999999999999999999 899999999
Q ss_pred eccccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHH
Q 014384 125 TKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQE 196 (425)
Q Consensus 125 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~ 196 (425)
+.... ...+..+|||+|| |..+++++|+++|++||.|..+.+. +|+|||+|.+.+
T Consensus 80 ~~~~~----------------~~~~~~~l~v~nl-~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~ 142 (168)
T 1b7f_A 80 ARPGG----------------ESIKDTNLYVTNL-PRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKRE 142 (168)
T ss_dssp CCCCS----------------STTTTCEEEEESC-CTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred cCCCc----------------ccCCCCCEEEeCC-CCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHH
Confidence 87543 1245689999999 7899999999999999999999885 479999999999
Q ss_pred HHHHHHHHcCCCccCC--eEEEEEEe
Q 014384 197 DATRALDATNMSKLTD--RVISVEYA 220 (425)
Q Consensus 197 ~A~~A~~~l~g~~~~g--~~i~v~~a 220 (425)
+|.+|+..|||..|.| +.|.|.||
T Consensus 143 ~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 143 EAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 9999999999999988 99999986
No 4
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=7.1e-30 Score=229.26 Aligned_cols=162 Identities=20% Similarity=0.375 Sum_probs=135.2
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 121 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~ 121 (425)
.+...++|||+|||+++|+++|.++|+.||.|..|.|. +|||||+|.+.++|.+||.. ++..| .|+.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~--~g~~l~ 85 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKV--DGRVVE 85 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEE--CCEEee
Confidence 45567999999999999999999999999999999883 68999999999999999955 88999 899999
Q ss_pred EEEeccccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEc
Q 014384 122 VEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYE 193 (425)
Q Consensus 122 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~ 193 (425)
|.++........ .....+..+|||+|| |..+++++|+++|++||.|..|.+. +|||||+|.
T Consensus 86 v~~~~~~~~~~~----------~~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~ 154 (196)
T 1l3k_A 86 PKRAVSREDSQR----------PGAHLTVKKIFVGGI-KEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFD 154 (196)
T ss_dssp EEECCC---------------------CCSEEEEECC-TTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEES
T ss_pred eecccCcccccc----------cccCCCcceEEEeCC-CCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEEC
Confidence 999876542211 122445689999999 8899999999999999999999985 579999999
Q ss_pred CHHHHHHHHHHcCCCccCCeEEEEEEeeeCCCC
Q 014384 194 VQEDATRALDATNMSKLTDRVISVEYAVRDDDD 226 (425)
Q Consensus 194 ~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~~~ 226 (425)
+.++|.+|+.. ++..|+|+.|.|.++..+...
T Consensus 155 ~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 155 DHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp SHHHHHHHHHC-SCCEETTEECEEEECC-----
T ss_pred CHHHHHHHHHh-CCcEECCEEEEEEecCChhHh
Confidence 99999999986 799999999999999886543
No 5
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=1.2e-29 Score=221.38 Aligned_cols=148 Identities=24% Similarity=0.489 Sum_probs=134.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEe
Q 014384 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 125 (425)
Q Consensus 54 ~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a 125 (425)
.++|||+|||+.+|+++|.++|+.||.|..|.|. +|||||+|.+.++|.+|+..|||..| .|+.|.|.++
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~--~g~~l~v~~~ 79 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL--QTKTIKVSYA 79 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEEC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCcc--CCceEEEEec
Confidence 5799999999999999999999999999999983 48999999999999999999999999 8999999998
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHH
Q 014384 126 KHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQED 197 (425)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~ 197 (425)
.... ......+|||+|| |..+++++|+++|++||.|..+.+. +|||||+|.+.++
T Consensus 80 ~~~~----------------~~~~~~~l~v~nl-~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~ 142 (167)
T 1fxl_A 80 RPSS----------------ASIRDANLYVSGL-PKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE 142 (167)
T ss_dssp CCCC----------------GGGTTCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred CCCc----------------ccCCCCcEEECCC-CCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHH
Confidence 7543 1234578999999 7889999999999999999999985 5799999999999
Q ss_pred HHHHHHHcCCCccCCeE--EEEEEe
Q 014384 198 ATRALDATNMSKLTDRV--ISVEYA 220 (425)
Q Consensus 198 A~~A~~~l~g~~~~g~~--i~v~~a 220 (425)
|.+|++.|||..|.|+. |.|.||
T Consensus 143 A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 143 AEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHhcCCccCCCccceEEEeC
Confidence 99999999999999964 888875
No 6
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=1.1e-29 Score=230.17 Aligned_cols=166 Identities=19% Similarity=0.279 Sum_probs=137.1
Q ss_pred CCCceEEEcCCC-CCCCHHHHHHHHhhcCCeeEEEEe---CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEecc
Q 014384 52 AMMRPIFCGNFE-YDARQSDLERLFRRYGKVDRVDMK---SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKH 127 (425)
Q Consensus 52 ~~~~~l~V~nL~-~~~t~~~L~~lF~~~G~V~~v~i~---kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~ 127 (425)
.+.++|||+||+ ..+|+++|.++|++||.|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|.|.+++.
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~--~g~~l~v~~s~~ 79 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFM--FGQKMNVCVSKQ 79 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEECSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEE--CCceEEEEEccC
Confidence 356899999999 899999999999999999999984 79999999999999999999999999 899999999975
Q ss_pred ccCCCCCC----CCC----------CCC-------CCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcE--EEEEEe
Q 014384 128 ERGIRRPG----GGS----------SAR-------RPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKI--ISVRIR 184 (425)
Q Consensus 128 ~~~~~~~~----~~~----------~~~-------~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v--~~v~~~ 184 (425)
........ ... ... .......+..+|||+|| |..+++++|+++|++||.| ..+.+.
T Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NL-p~~~t~~~L~~~F~~~G~v~~~~v~~~ 158 (205)
T 3tyt_A 80 PAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNA-PLEVTEENFFEICDELGVKRPTSVKVF 158 (205)
T ss_dssp SCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEE-CTTCCHHHHHHHHHHHTCCCCSEEEEC
T ss_pred CccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCC-CCCCCHHHHHHHHHhcCCcceEEEEEE
Confidence 43211100 000 000 00112356789999999 8899999999999999998 888875
Q ss_pred ------ccEEEEEEcCHHHHHHHHHHcCCCccCCe----EEEEEEe
Q 014384 185 ------RNFAFVQYEVQEDATRALDATNMSKLTDR----VISVEYA 220 (425)
Q Consensus 185 ------~g~afV~f~~~~~A~~A~~~l~g~~~~g~----~i~v~~a 220 (425)
+|+|||+|.+.++|.+|+..|||..|.|. ++.|.++
T Consensus 159 ~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 159 SGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred cCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 37999999999999999999999999986 5777665
No 7
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=2.8e-29 Score=231.64 Aligned_cols=171 Identities=23% Similarity=0.322 Sum_probs=144.7
Q ss_pred hhcCCCceEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEe---CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEE
Q 014384 49 AFEAMMRPIFCGNFEY-DARQSDLERLFRRYGKVDRVDMK---SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 124 (425)
Q Consensus 49 ~~~~~~~~l~V~nL~~-~~t~~~L~~lF~~~G~V~~v~i~---kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~ 124 (425)
....+.++|||+|||+ ++|+++|.++|++||.|..|.|. +|||||+|.+.++|.+|+..|||..| .|+.|.|.+
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~--~g~~l~v~~ 106 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKL--HGKPIRITL 106 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBC--SSSBCEEEC
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEEE
Confidence 3456789999999999 99999999999999999999995 79999999999999999999999999 899999999
Q ss_pred eccccCCCCCCC----------------C---CCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCC-cEEEEEE-
Q 014384 125 TKHERGIRRPGG----------------G---SSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYG-KIISVRI- 183 (425)
Q Consensus 125 a~~~~~~~~~~~----------------~---~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G-~v~~v~~- 183 (425)
+........... . ...........+..+|||+|| |..+++++|+++|.+|| .|..|.+
T Consensus 107 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~~i~~v~i~ 185 (229)
T 2adc_A 107 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNI-PPSVSEEDLKVLFSSNGGVVKGFKFF 185 (229)
T ss_dssp CSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECC-CTTCCHHHHHHHHHTTSCCEEEEEEC
T ss_pred ecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCC-CccCCHHHHHHHHHHcCCCeeEEEEE
Confidence 975421110000 0 000000122456799999999 78899999999999999 9999999
Q ss_pred --eccEEEEEEcCHHHHHHHHHHcCCCccC-CeEEEEEEeee
Q 014384 184 --RRNFAFVQYEVQEDATRALDATNMSKLT-DRVISVEYAVR 222 (425)
Q Consensus 184 --~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~i~v~~a~~ 222 (425)
.+|||||+|.+.++|.+|+..|||..|+ |+.|.|.|++.
T Consensus 186 ~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 186 QKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp SSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred ECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 3789999999999999999999999999 99999999875
No 8
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=3.7e-29 Score=228.04 Aligned_cols=167 Identities=21% Similarity=0.411 Sum_probs=141.6
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 121 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~ 121 (425)
.....++|||+|||.++|+++|.++|+.||+|..|.| .+|||||+|.+.++|.+|+..|||..| .|+.|.
T Consensus 24 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~--~g~~l~ 101 (216)
T 2qfj_A 24 ALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVML--GGRNIK 101 (216)
T ss_dssp HHHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCC--C-CCCE
T ss_pred ccCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCee--CCeeEE
Confidence 3445789999999999999999999999999999998 379999999999999999999999999 899999
Q ss_pred EEEeccccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEc
Q 014384 122 VEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYE 193 (425)
Q Consensus 122 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~ 193 (425)
|.++.......... ...........+|||+|| +..+++++|+++|++||.|..|.+. +|||||+|.
T Consensus 102 v~~~~~~~~~~~~~-----~~~~~~~~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~ 175 (216)
T 2qfj_A 102 VGRPSNIGQAQPII-----DQLAEEARAFNRIYVASV-HQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYE 175 (216)
T ss_dssp EECCSCCGGGHHHH-----HHHHHHHTTSCEEEEECC-CTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEES
T ss_pred EecCCCccccchhh-----hhhhcccCCCcEEEEeCC-CCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEec
Confidence 98876543110000 000011245689999999 7889999999999999999999985 579999999
Q ss_pred CHHHHHHHHHHcCCCccCCeEEEEEEeeeCC
Q 014384 194 VQEDATRALDATNMSKLTDRVISVEYAVRDD 224 (425)
Q Consensus 194 ~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~ 224 (425)
+.++|.+|+..|||..|+|+.|.|.++....
T Consensus 176 ~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 176 KAQSSQDAVSSMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp SHHHHHHHHHHHTTCBCSSSBCEEEECSSCS
T ss_pred CHHHHHHHHHHccCCEeCCcEEEEEEecCCC
Confidence 9999999999999999999999999998764
No 9
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=5.8e-29 Score=236.58 Aligned_cols=169 Identities=22% Similarity=0.419 Sum_probs=141.7
Q ss_pred hcCCCceEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEe-----CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLE----RLFRRYGKVDRVDMK-----SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRL 120 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~----~lF~~~G~V~~v~i~-----kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l 120 (425)
...+.++|||+|||+++|+++|+ ++|.+||.|..|.|. +|||||+|.+.++|.+|+..|||..| .|+.|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l 82 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPF--YDKPM 82 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCee--CCcEE
Confidence 44678999999999999999966 999999999999984 69999999999999999999999999 89999
Q ss_pred EEEEeccccCCCCCCCCC-------------------------------------CC-----------------------
Q 014384 121 RVEWTKHERGIRRPGGGS-------------------------------------SA----------------------- 140 (425)
Q Consensus 121 ~V~~a~~~~~~~~~~~~~-------------------------------------~~----------------------- 140 (425)
.|.|+...........+. ..
T Consensus 83 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 162 (282)
T 3pgw_A 83 RIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPP 162 (282)
T ss_pred EEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCC
Confidence 999997644210000000 00
Q ss_pred -----------------------------------CCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe-
Q 014384 141 -----------------------------------RRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR- 184 (425)
Q Consensus 141 -----------------------------------~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~- 184 (425)
........+.++|||+|| +..+++++|+++|++||.|..|.+.
T Consensus 163 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl-~~~~~~~~l~~~F~~~G~i~~v~~~~ 241 (282)
T 3pgw_A 163 YMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNL-PEETNELMLSMLFNQFPGFKEVRLVP 241 (282)
T ss_pred CCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCC-CCcCCHHHHHHHHHhcCCeEEEEEec
Confidence 000123345689999999 7899999999999999999999996
Q ss_pred --ccEEEEEEcCHHHHHHHHHHcCCCccC-CeEEEEEEee
Q 014384 185 --RNFAFVQYEVQEDATRALDATNMSKLT-DRVISVEYAV 221 (425)
Q Consensus 185 --~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~i~v~~a~ 221 (425)
+|||||+|.+.++|.+|++.|||..|. |+.|.|.|++
T Consensus 242 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 242 GRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 489999999999999999999999999 9999999986
No 10
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.96 E-value=5.8e-29 Score=223.66 Aligned_cols=168 Identities=17% Similarity=0.338 Sum_probs=141.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEE--eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcE
Q 014384 53 MMRPIFCGNFEYDARQSDLERLFRRY----G-------KVDRVDM--KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRR 119 (425)
Q Consensus 53 ~~~~l~V~nL~~~~t~~~L~~lF~~~----G-------~V~~v~i--~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~ 119 (425)
..++|||+|||+++|+++|.++|+.| | .|..+.+ .+|||||+|.+.++|.+|| .|||..| .|+.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~--~g~~ 79 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIF--QGQS 79 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEE--TTEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEE--cCce
Confidence 46899999999999999999999999 5 6777777 4899999999999999999 9999999 8999
Q ss_pred EEEEEeccccCCCCCCCC----CCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccE
Q 014384 120 LRVEWTKHERGIRRPGGG----SSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNF 187 (425)
Q Consensus 120 l~V~~a~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~ 187 (425)
|.|.++............ ...........+..+|||+|| |..+++++|+++|.+||.|..|.+. +||
T Consensus 80 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl-~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~ 158 (198)
T 2yh0_A 80 LKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGL-PNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGY 158 (198)
T ss_dssp EEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECC-CTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEE
T ss_pred EEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCC-CCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceE
Confidence 999998765422111110 011122233467799999999 7899999999999999999999985 579
Q ss_pred EEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeCC
Q 014384 188 AFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDD 224 (425)
Q Consensus 188 afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~ 224 (425)
|||+|.+.++|.+|++.|||..|+|+.|.|.++....
T Consensus 159 afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 159 AFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred EEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 9999999999999999999999999999999998753
No 11
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.96 E-value=2.9e-29 Score=220.45 Aligned_cols=148 Identities=19% Similarity=0.384 Sum_probs=134.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEE--eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcE
Q 014384 53 MMRPIFCGNFEYDARQSDLERLFRRY----G-------KVDRVDM--KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRR 119 (425)
Q Consensus 53 ~~~~l~V~nL~~~~t~~~L~~lF~~~----G-------~V~~v~i--~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~ 119 (425)
+.++|||+|||+++|+++|.++|++| | .|..+.+ .+|||||+|.++++|.+|+ .|||..| .|+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~--~g~~ 79 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIF--QGQS 79 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEE--TTEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEe--cCce
Confidence 46899999999999999999999999 7 7888877 4899999999999999999 9999999 8999
Q ss_pred EEEEEeccccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEE
Q 014384 120 LRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQ 191 (425)
Q Consensus 120 l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~ 191 (425)
|.|.++.... ......+|||+|| |..+++++|+++|++||.|..|.+. +|||||+
T Consensus 80 i~v~~~~~~~----------------~~~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~ 142 (172)
T 2g4b_A 80 LKIRRPHDYQ----------------PLPGAHKLFIGGL-PNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCE 142 (172)
T ss_dssp CEEECCSSCC----------------CCTTTTCEEEECC-CTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEE
T ss_pred eeecCCcccC----------------CCCCCCEEEEEcC-CCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEE
Confidence 9999876533 1233689999999 8899999999999999999999985 5699999
Q ss_pred EcCHHHHHHHHHHcCCCccCCeEEEEEEe
Q 014384 192 YEVQEDATRALDATNMSKLTDRVISVEYA 220 (425)
Q Consensus 192 f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 220 (425)
|.+.++|.+|++.|||..|+|+.|.|.||
T Consensus 143 f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 143 YVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp ESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred eCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 99999999999999999999999999987
No 12
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=8.7e-29 Score=217.82 Aligned_cols=153 Identities=22% Similarity=0.351 Sum_probs=134.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe----------CCEEEEEEcCHHHHHHHHHhcCCCeec-CCCcEEE
Q 014384 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK----------SGFAFIYMDDERDAEDAIRGLDRTEFG-RKGRRLR 121 (425)
Q Consensus 53 ~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~----------kg~aFV~F~~~~~A~~A~~~lng~~ig-~~gr~l~ 121 (425)
+.++|||+|||+++|+++|.++|++||+|..|.|. +|||||+|.+.++|.+|++.|||..+. ..++.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999872 579999999999999999999998762 2378888
Q ss_pred EEEeccccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe-------ccEEEEEEcC
Q 014384 122 VEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEV 194 (425)
Q Consensus 122 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~-------~g~afV~f~~ 194 (425)
|.++..... ...+..+|||+|| |..+++++|+++|++||.|..|.+. +|||||+|.+
T Consensus 82 ~~~~~~~~~---------------~~~~~~~l~v~nl-~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~ 145 (175)
T 3nmr_A 82 MKPADSEKN---------------NAVEDRKLFIGMI-SKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTT 145 (175)
T ss_dssp EEECGGGCC---------------SCGGGSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESS
T ss_pred Ecccccccc---------------ccCCCCeEEEcCC-CCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECC
Confidence 888765441 1235679999999 8889999999999999999999985 5699999999
Q ss_pred HHHHHHHHHHcCCCccC---CeEEEEEEee
Q 014384 195 QEDATRALDATNMSKLT---DRVISVEYAV 221 (425)
Q Consensus 195 ~~~A~~A~~~l~g~~~~---g~~i~v~~a~ 221 (425)
.++|.+|++.|||..+. |+.|.|.||.
T Consensus 146 ~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 146 RAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 99999999999998776 4899999973
No 13
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=7.3e-29 Score=237.05 Aligned_cols=193 Identities=20% Similarity=0.259 Sum_probs=158.3
Q ss_pred eeeEEEEeCCCCcccccccCCcceeecccccccchhhhhhhcCCCceEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEE--
Q 014384 10 CHYLLIVYSHSVWPVQKKYLPRRLYVLGFRRSHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYG-KVDRVDM-- 86 (425)
Q Consensus 10 ~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G-~V~~v~i-- 86 (425)
..||||.|.+...+..+............ +.......++|||+|||+.+|+++|.++|..|| .|..|.|
T Consensus 81 ~g~afV~f~~~~~A~~A~~~~~~~~~g~~--------i~v~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~ 152 (292)
T 2ghp_A 81 FRFARIEFARYDGALAAITKTHKVVGQNE--------IIVSHLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPS 152 (292)
T ss_dssp SEEEEEEESSHHHHHHHHTTTTCEETTEE--------CEEEECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-
T ss_pred cEEEEEEECCHHHHHHHHHhCCcEeCCcE--------EEEEECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEe
Confidence 47999999988776666543332221111 112335689999999999999999999999999 9999998
Q ss_pred -----eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEeccccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCC
Q 014384 87 -----KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPY 161 (425)
Q Consensus 87 -----~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~ 161 (425)
.+|||||+|.+.++|.+|+..|||..| .|+.|.|.|+......... .....+..+|||+|| |.
T Consensus 153 ~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~a~~~~~~~~~---------~~~~~~~~~l~v~nl-p~ 220 (292)
T 2ghp_A 153 LRFNTSRRFAYIDVTSKEDARYCVEKLNGLKI--EGYTLVTKVSNPLEKSKRT---------DSATLEGREIMIRNL-ST 220 (292)
T ss_dssp ------CCEEEEECSSHHHHHHHHHHHTTCEE--TTEECEEEECCCC------------------CCTTTEEEEEEE-CT
T ss_pred CCCCCcceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEEEECCCCcccccc---------cccCCCCceEEEECC-Cc
Confidence 379999999999999999999999999 8999999998765422111 123566789999999 78
Q ss_pred C-CCHHHHHhhhccCCcEEEEEEe---------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeC
Q 014384 162 H-TRTRDLERHFEPYGKIISVRIR---------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 223 (425)
Q Consensus 162 ~-~~~~~L~~~f~~~G~v~~v~~~---------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 223 (425)
. +++++|+++|.+||.|..|.++ +|||||+|.+.++|.+|+ .|||..|+|+.|.|.|+..+
T Consensus 221 ~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 221 ELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred ccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 8 9999999999999999999885 469999999999999999 99999999999999999864
No 14
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=5.3e-29 Score=224.32 Aligned_cols=167 Identities=23% Similarity=0.327 Sum_probs=142.1
Q ss_pred CCceEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEe---CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEeccc
Q 014384 53 MMRPIFCGNFEY-DARQSDLERLFRRYGKVDRVDMK---SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHE 128 (425)
Q Consensus 53 ~~~~l~V~nL~~-~~t~~~L~~lF~~~G~V~~v~i~---kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~ 128 (425)
..++|||+|||+ .+|+++|.++|++||.|..|.|. +|||||+|.+.++|.+|+..|||..| .|+.|.|.|+...
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKL--HGKPIRITLSKHQ 79 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCC--SSCCCEEEECCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCee--cCeEEEEEEecCC
Confidence 358999999999 99999999999999999999995 79999999999999999999999999 8999999999754
Q ss_pred cCCCCCCC-------------------CCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCC-cEEEEEEe---c
Q 014384 129 RGIRRPGG-------------------GSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYG-KIISVRIR---R 185 (425)
Q Consensus 129 ~~~~~~~~-------------------~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G-~v~~v~~~---~ 185 (425)
........ ............+..+|||+|| |..+++++|+++|.+|| .|..|.+. +
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl-~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~ 158 (198)
T 1qm9_A 80 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNI-PPSVSEEDLKVLFSSNGGVVKGFKFFQKDR 158 (198)
T ss_dssp SCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCC-CTTCCHHHHHHHHHHTTSCCCEEEESSTTS
T ss_pred CcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCC-CCCCCHHHHHHHHHHcCCCceEEEEEeCCC
Confidence 31110000 0000011122456899999999 78899999999999999 99999993 6
Q ss_pred cEEEEEEcCHHHHHHHHHHcCCCccC-CeEEEEEEeee
Q 014384 186 NFAFVQYEVQEDATRALDATNMSKLT-DRVISVEYAVR 222 (425)
Q Consensus 186 g~afV~f~~~~~A~~A~~~l~g~~~~-g~~i~v~~a~~ 222 (425)
|+|||+|.+.++|.+|+..|||..|+ |+.|.|.|+..
T Consensus 159 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 159 KMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp SCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred cEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 89999999999999999999999999 99999999875
No 15
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=9.1e-29 Score=235.47 Aligned_cols=191 Identities=17% Similarity=0.188 Sum_probs=157.4
Q ss_pred eeEEEEeCCCCccccccc-CCcceeecccccccchhhhhhhcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--
Q 014384 11 HYLLIVYSHSVWPVQKKY-LPRRLYVLGFRRSHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-- 87 (425)
Q Consensus 11 ~y~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~-- 87 (425)
.||||.|.+...+..+.. ++...... .... .......++|||+|||+.+|+++|.++|+.||.|..|.|.
T Consensus 58 g~afV~f~~~~~A~~A~~~l~~~~~~g-~~i~------v~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~ 130 (284)
T 3smz_A 58 GTAFVTLLNGEQAEAAINAFHQSRLRE-RELS------VQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYS 130 (284)
T ss_dssp TEEEEEESSHHHHHHHHHHHTTCEETT-EECE------EEECCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC
T ss_pred CEEEEEeCCHHHHHHHHHHcCCCeeCC-eEEE------EEecCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEee
Confidence 499999998776555542 22222111 1111 1123456899999999999999999999999999999872
Q ss_pred ------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEeccccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCC
Q 014384 88 ------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPY 161 (425)
Q Consensus 88 ------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~ 161 (425)
+|||||+|.+.++|.+|+..|||..| .|+.|.|.|+...... ....+..+|||+|| |.
T Consensus 131 ~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~i~v~~a~~~~~~-------------~~~~~~~~l~v~nl-p~ 194 (284)
T 3smz_A 131 ERTGQSKGYGFAEYMKKDSAARAKSDLLGKPL--GPRTLYVHWTDAGQLT-------------PALLHSRCLCVDRL-PP 194 (284)
T ss_dssp TTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEECCGGGCC-------------TTTTSCSEEEEECC-CT
T ss_pred CCCCccceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEEEECCCCCCC-------------cccCCccEEEEecC-Cc
Confidence 68999999999999999999999999 8999999999765421 12356789999999 67
Q ss_pred C-CCHHHHHhhhccCCcEEEEEEe-------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeCC
Q 014384 162 H-TRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDD 224 (425)
Q Consensus 162 ~-~~~~~L~~~f~~~G~v~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~ 224 (425)
. +++++|+++|+.||.|..|.+. +|+|||+|.+.++|.+|+..|||..|+|+.|.|.|+..+.
T Consensus 195 ~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 195 GFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGP 265 (284)
T ss_dssp TCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSS
T ss_pred ccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCC
Confidence 7 5899999999999999999885 5799999999999999999999999999999999997754
No 16
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.96 E-value=3.8e-29 Score=220.57 Aligned_cols=157 Identities=18% Similarity=0.333 Sum_probs=136.5
Q ss_pred hhcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE-------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEE
Q 014384 49 AFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM-------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 121 (425)
Q Consensus 49 ~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i-------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~ 121 (425)
..+...++|||+|||..+|+++|.++|..||.|..+.| ++|||||+|.+.++|.+|+ .|||..| .|+.|.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~ 84 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKV--FGNEIK 84 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEE--TTEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEe--CCeEEE
Confidence 35567899999999999999999999999986544222 3799999999999999999 6999999 799999
Q ss_pred EEEeccccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEE---eccEEEEEEcCHHHH
Q 014384 122 VEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI---RRNFAFVQYEVQEDA 198 (425)
Q Consensus 122 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~---~~g~afV~f~~~~~A 198 (425)
|.++..... ....+..+|||+|| |..+++++|+++|++||.|..+.. .+|||||+|.+.++|
T Consensus 85 v~~~~~~~~--------------~~~~~~~~l~v~nl-p~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A 149 (175)
T 1fje_B 85 LEKPKGRDS--------------KKVRAARTLLAKNL-SFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADA 149 (175)
T ss_dssp EECCCCSSC--------------STTGGGGEEEEESC-CSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHH
T ss_pred EecCCCccc--------------cccccCCEEEEeCC-CCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHH
Confidence 999876431 12345789999999 888999999999999999988811 268999999999999
Q ss_pred HHHHHHcCCCccCCeEEEEEEeeeC
Q 014384 199 TRALDATNMSKLTDRVISVEYAVRD 223 (425)
Q Consensus 199 ~~A~~~l~g~~~~g~~i~v~~a~~~ 223 (425)
.+|+..|||..|+|+.|.|.|+.++
T Consensus 150 ~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 150 EKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHHHHHTEEEETTEEEEEEECSSC
T ss_pred HHHHHHhCCCEECCeEEEEEecCCC
Confidence 9999999999999999999999764
No 17
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=3.4e-29 Score=218.95 Aligned_cols=149 Identities=20% Similarity=0.469 Sum_probs=133.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEE
Q 014384 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 124 (425)
Q Consensus 53 ~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~ 124 (425)
+.++|||+|||+++|+++|.++|+.||+|..|.|. +|||||+|.+.++|.+|+.. +..| +|+.|.|.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~--~g~~i~v~~ 77 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHIL--DGKVIDPKR 77 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEE--TTEECCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--cccc--CCeEccccc
Confidence 46899999999999999999999999999999983 68999999999999999974 5677 799999998
Q ss_pred eccccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHH
Q 014384 125 TKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQE 196 (425)
Q Consensus 125 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~ 196 (425)
+..... ..+..+|||+|| |..+++++|+++|++||.|..+.+. +|||||+|.+.+
T Consensus 78 ~~~~~~----------------~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~ 140 (167)
T 2cjk_A 78 AIPRDE----------------QDKTGKIFVGGI-GPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSAD 140 (167)
T ss_dssp CCCHHH----------------HHHCEEEEEEEE-CTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHH
T ss_pred ccchhh----------------ccCCCeEEECCC-CCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHH
Confidence 765431 223579999999 8899999999999999999999985 469999999999
Q ss_pred HHHHHHHHcCCCccCCeEEEEEEeeeC
Q 014384 197 DATRALDATNMSKLTDRVISVEYAVRD 223 (425)
Q Consensus 197 ~A~~A~~~l~g~~~~g~~i~v~~a~~~ 223 (425)
+|.+|++ +++..|+|+.|.|.+|.++
T Consensus 141 ~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 141 AVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred HHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 9999998 8999999999999999764
No 18
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.95 E-value=1.8e-27 Score=223.90 Aligned_cols=149 Identities=29% Similarity=0.408 Sum_probs=135.7
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEecc
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKH 127 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~ 127 (425)
.....++|||+|||+++|+++|.++|+.||.|..|.|. +|||||+|.+.++|..|+..|||..| .|+.|.|.|+..
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i--~g~~l~v~~a~~ 95 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTIL--KSRPLRIRFATH 95 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEE--TTEECEEEECCC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEE--CCceeEeeeccc
Confidence 34566899999999999999999999999999999995 89999999999999999999999999 899999999753
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe-------ccEEEEEEcCHHHHHH
Q 014384 128 ERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATR 200 (425)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~-------~g~afV~f~~~~~A~~ 200 (425)
..+|||+|| |..+++++|+++|..||.|..|.+. +|||||+|.+.++|.+
T Consensus 96 ----------------------~~~l~v~nl-~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~ 152 (261)
T 3sde_A 96 ----------------------GAALTVKNL-SPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARK 152 (261)
T ss_dssp ----------------------SSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHH
T ss_pred ----------------------CCcccccCC-CCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHH
Confidence 468999999 7889999999999999999999985 6899999999999999
Q ss_pred HHHHcCC-CccC---CeEEEEEEeeeC
Q 014384 201 ALDATNM-SKLT---DRVISVEYAVRD 223 (425)
Q Consensus 201 A~~~l~g-~~~~---g~~i~v~~a~~~ 223 (425)
|+..||+ ..+. |++|.|.++...
T Consensus 153 A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 153 ALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred HHHHhcCCeEEecCCCceEEEeecccc
Confidence 9999955 4444 899999998765
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=8.9e-27 Score=221.68 Aligned_cols=149 Identities=20% Similarity=0.316 Sum_probs=137.4
Q ss_pred hhcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEec
Q 014384 49 AFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 126 (425)
Q Consensus 49 ~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~ 126 (425)
......++|||+|||+++|+++|.++|+.|| |..|.+ .+|||||+|.+.++|.+|+..|||..| .|+.|.|.++.
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~--~g~~i~v~~~~ 93 (284)
T 3smz_A 17 RQFRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRL--RERELSVQLQP 93 (284)
T ss_dssp HHHHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEECC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCee--CCeEEEEEecC
Confidence 3445679999999999999999999999999 999988 489999999999999999999999999 89999999853
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHH
Q 014384 127 HERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDA 198 (425)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A 198 (425)
+..+|||+|| |..+++++|+++|..||.|..+.+. +|||||+|.+.++|
T Consensus 94 ----------------------~~~~l~v~nl-p~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a 150 (284)
T 3smz_A 94 ----------------------TDALLCVANL-PPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSA 150 (284)
T ss_dssp ----------------------CSCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred ----------------------CCCEEEEcCC-CCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHH
Confidence 2469999999 8899999999999999999999885 56999999999999
Q ss_pred HHHHHHcCCCccCCeEEEEEEeeeC
Q 014384 199 TRALDATNMSKLTDRVISVEYAVRD 223 (425)
Q Consensus 199 ~~A~~~l~g~~~~g~~i~v~~a~~~ 223 (425)
..|+..|+|..|+|+.|.|.++...
T Consensus 151 ~~A~~~l~~~~~~g~~i~v~~a~~~ 175 (284)
T 3smz_A 151 ARAKSDLLGKPLGPRTLYVHWTDAG 175 (284)
T ss_dssp HHHHHHHTTCEETTEECEEEECCGG
T ss_pred HHHHHHhCCCEeCCcEEEEEECCCC
Confidence 9999999999999999999999765
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.94 E-value=1.7e-26 Score=220.53 Aligned_cols=148 Identities=20% Similarity=0.264 Sum_probs=133.6
Q ss_pred hhcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEE
Q 014384 49 AFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 122 (425)
Q Consensus 49 ~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V 122 (425)
......++|||+|||+++|+++|.++|+.||+|..|.|. +|||||+|.+.++|.+|+ .|||..| .|+.|.|
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~--~g~~i~v 112 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAI-TKTHKVV--GQNEIIV 112 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHH-TTTTCEE--TTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHH-HhCCcEe--CCcEEEE
Confidence 345678999999999999999999999999999999983 699999999999999999 6999999 8999999
Q ss_pred EEeccccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCC-cEEEEEEe-------ccEEEEEEcC
Q 014384 123 EWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYG-KIISVRIR-------RNFAFVQYEV 194 (425)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G-~v~~v~~~-------~g~afV~f~~ 194 (425)
.++. ..+|||+|| |..+++++|.++|..|| .|..|.++ +|||||+|.+
T Consensus 113 ~~~~-----------------------~~~l~v~nl-p~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~ 168 (292)
T 2ghp_A 113 SHLT-----------------------ECTLWMTNF-PPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTS 168 (292)
T ss_dssp EECC-----------------------SCEEEEECC-CTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSS
T ss_pred EECC-----------------------CCEEEEECC-CCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECC
Confidence 9863 478999999 88899999999999999 99999884 6899999999
Q ss_pred HHHHHHHHHHcCCCccCCeEEEEEEeeeC
Q 014384 195 QEDATRALDATNMSKLTDRVISVEYAVRD 223 (425)
Q Consensus 195 ~~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 223 (425)
.++|..|+..|||..|.|+.|.|.++...
T Consensus 169 ~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 197 (292)
T 2ghp_A 169 KEDARYCVEKLNGLKIEGYTLVTKVSNPL 197 (292)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred HHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 99999999999999999999999998764
No 21
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.86 E-value=2.4e-21 Score=194.38 Aligned_cols=78 Identities=31% Similarity=0.500 Sum_probs=71.8
Q ss_pred CCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEE
Q 014384 146 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217 (425)
Q Consensus 146 ~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 217 (425)
...+.++|||+|| +..+++++|+++|.+||.|+.|.|+ +|||||+|.+.++|.+||..|||..|+|+.|.|
T Consensus 98 ~~~~~~~lfV~nL-~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V 176 (437)
T 3pgw_S 98 QGDAFKTLFVARV-NYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLV 176 (437)
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEE
Confidence 3456789999999 8899999999999999999999985 689999999999999999999999999999999
Q ss_pred EEeeeCC
Q 014384 218 EYAVRDD 224 (425)
Q Consensus 218 ~~a~~~~ 224 (425)
.|+....
T Consensus 177 ~~a~~~~ 183 (437)
T 3pgw_S 177 DVERGRT 183 (437)
T ss_pred EEeCCCC
Confidence 9998653
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=4.8e-21 Score=156.99 Aligned_cols=103 Identities=17% Similarity=0.286 Sum_probs=69.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEec
Q 014384 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 126 (425)
Q Consensus 53 ~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~ 126 (425)
..++|||+|||+.+|+++|+++|++||.|..|.|. +|||||+|.+.++|++||..|||..| +|+.|.|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~--~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL--NDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEE--TTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEE--CCEEEEEEECC
Confidence 46789999999999999999999999999999983 78999999999999999999999999 89999999987
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHH
Q 014384 127 HERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTR 166 (425)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~ 166 (425)
....... ..........+|||+|| +..+|++
T Consensus 82 ~~~~~~~--------~~~~~~~~~~~lyv~Nl-~~~~T~~ 112 (115)
T 4f25_A 82 SRKEREA--------ELGARAKEFTNVYIKNF-GPGSTRA 112 (115)
T ss_dssp CCCC------------------------------------
T ss_pred Ccccccc--------ccccccCCCCceEeCCC-CCCcccc
Confidence 6442111 11122334567999999 5566554
No 23
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.84 E-value=7.3e-21 Score=163.49 Aligned_cols=132 Identities=20% Similarity=0.235 Sum_probs=111.0
Q ss_pred CCEEEEEEcCHHHHHHHHHhc-CCCeecCCCcEEEEEEeccccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHH
Q 014384 88 SGFAFIYMDDERDAEDAIRGL-DRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTR 166 (425)
Q Consensus 88 kg~aFV~F~~~~~A~~A~~~l-ng~~ig~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~ 166 (425)
+|+++|+|.+.++|++|+..| ||..| +| .|.|.++.......................+.++|||+|| |..++++
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng~~~--~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl-~~~~t~~ 88 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYANDNGV--DG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNL-GNNGNKT 88 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHHHTC--CC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESC-CSCCSCH
T ss_pred cccceeeecCHHHHHHHHHHHhcCCCC--CC-ceecccccCccccccccccccccccccCCCCCCEEEEeCC-CCCCCHH
Confidence 799999999999999999999 99999 89 9999988654321111111111233445567799999999 7889999
Q ss_pred HHHhhhccCCcEEEEEEe---ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeC
Q 014384 167 DLERHFEPYGKIISVRIR---RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 223 (425)
Q Consensus 167 ~L~~~f~~~G~v~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 223 (425)
+|+++|.+||.|..|.++ +|||||+|.+.++|..|+..|||..|+|+.|.|.++..+
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 999999999999999996 789999999999999999999999999999999999774
No 24
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.80 E-value=2.9e-19 Score=154.74 Aligned_cols=132 Identities=24% Similarity=0.279 Sum_probs=100.3
Q ss_pred eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEeccccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHH
Q 014384 87 KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTR 166 (425)
Q Consensus 87 ~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~ 166 (425)
.+|||||+|.+.++|++|+..+++... .+..+.+............ ...........+..+|||+|| |..++++
T Consensus 12 ~~G~~fV~f~~~~~A~~al~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~v~nl-~~~~~~~ 85 (158)
T 2kn4_A 12 LKGETTTEAVDAATAEKVFKQYANDNG--VDGEWTYDDATKTFTVTEG---SHHHHHHMDVEGMTSLKVDNL-TYRTSPD 85 (158)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHT--CCCEEEEETTTTEEEEECC---CCCSSCCCCCCBCCEEEEESC-CTTCCHH
T ss_pred ccchhHHHHHHHHhHHHHHHhhcccCC--CCCcccccCcccccccccc---ccccccccCCCCCCEEEEeCC-CCCCCHH
Confidence 379999999999999999988886433 2333333221111000000 001122233456789999999 8899999
Q ss_pred HHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeCC
Q 014384 167 DLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDD 224 (425)
Q Consensus 167 ~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~ 224 (425)
+|+++|++||.|..|.|+ +|||||+|.+.++|..|++.|||..|+|+.|.|.++....
T Consensus 86 ~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 86 TLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp HHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred HHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 999999999999999985 5799999999999999999999999999999999998753
No 25
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.78 E-value=7.8e-19 Score=139.71 Aligned_cols=75 Identities=20% Similarity=0.396 Sum_probs=69.6
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEE
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 122 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V 122 (425)
....++|||+|||+++|+++|.++|++||+|..|.|. +|||||+|.+.++|.+|+..|||..| +|+.|.|
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~--~gr~l~V 93 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL--QSKTIKV 93 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEE--CCEEEEE
Confidence 3456899999999999999999999999999999883 68999999999999999999999999 8999999
Q ss_pred EEecc
Q 014384 123 EWTKH 127 (425)
Q Consensus 123 ~~a~~ 127 (425)
.||++
T Consensus 94 ~~AkP 98 (99)
T 4fxv_A 94 SYARP 98 (99)
T ss_dssp EECCB
T ss_pred EEeeC
Confidence 99964
No 26
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=7e-19 Score=140.48 Aligned_cols=97 Identities=36% Similarity=0.571 Sum_probs=81.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE---eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEeccccCC
Q 014384 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDM---KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGI 131 (425)
Q Consensus 55 ~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i---~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~~~~ 131 (425)
++|||+|||+.+|+++|.++|++||+|..|.| ++|||||+|.+.++|++|+..|||..| +|+.|.|.|+......
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVI--CGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCS--SSCCCEEEESSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeE--CCcEEEEEEccCCCCc
Confidence 58999999999999999999999999999999 479999999999999999999999999 8999999999876532
Q ss_pred CCCCCCCCCCCCCCCCCCCcEEEEEcCC
Q 014384 132 RRPGGGSSARRPSTNTRPSKTLFVINFD 159 (425)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~l~V~nl~ 159 (425)
.... ..........+|||+||+
T Consensus 79 ~~~~------~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 79 SRFD------RPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp SCCC------SCCCSCCCCSCCCSCCCC
T ss_pred ccCC------CCCccccCCCceecCCCC
Confidence 2211 111223446789999993
No 27
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.76 E-value=3.4e-17 Score=164.19 Aligned_cols=76 Identities=32% Similarity=0.611 Sum_probs=70.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEE
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 123 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~ 123 (425)
.+.++|||+|||+.||+++|.++|++||+|+.|.|. +|||||+|.+.++|.+||..|||+.| +|+.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i--~gr~i~V~ 177 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKI--DGRRVLVD 177 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEE--CCEEEEEE
Confidence 345799999999999999999999999999999883 79999999999999999999999999 89999999
Q ss_pred Eecccc
Q 014384 124 WTKHER 129 (425)
Q Consensus 124 ~a~~~~ 129 (425)
|+....
T Consensus 178 ~a~~~~ 183 (437)
T 3pgw_S 178 VERGRT 183 (437)
T ss_pred EeCCCC
Confidence 998644
No 28
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.75 E-value=2.7e-18 Score=135.59 Aligned_cols=80 Identities=13% Similarity=0.147 Sum_probs=71.9
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEecc
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKH 127 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~ 127 (425)
...+.++|||+|||..+|+++|.++|++||+|..|.|. +|||||+|++.++|.+|+..||+..+.+.|++|.|+|++.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTS 96 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSC
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccc
Confidence 44678999999999999999999999999999999984 8999999999999999999999986322799999999986
Q ss_pred cc
Q 014384 128 ER 129 (425)
Q Consensus 128 ~~ 129 (425)
+.
T Consensus 97 k~ 98 (100)
T 3r27_A 97 QK 98 (100)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 29
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.75 E-value=2.2e-18 Score=131.44 Aligned_cols=72 Identities=14% Similarity=0.116 Sum_probs=68.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEec
Q 014384 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 126 (425)
Q Consensus 53 ~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~ 126 (425)
...-|||+||++.+|+++|.+||.+||+|..|.| ++|||||+|.+.++|++|+..||+..| .|++|.|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l--~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVL--ANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEE--TTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEE--CCcEEEEEECC
Confidence 4678999999999999999999999999999998 599999999999999999999999999 89999999873
No 30
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=6.2e-18 Score=131.98 Aligned_cols=77 Identities=32% Similarity=0.599 Sum_probs=73.3
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEecccc
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 129 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~~ 129 (425)
....++|||+|||.++|+++|.++|++||+|..|.|.+|||||+|.+.++|++|+..|||..| +|+.|.|+|+....
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL--HGVNINVEASKNKS 81 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHHHHTTCBC--SSCBCEEECSSCCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHHHhcCCcc--CCcEEEEEECCCCC
Confidence 457899999999999999999999999999999999999999999999999999999999999 89999999998765
No 31
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.6e-18 Score=136.26 Aligned_cols=78 Identities=21% Similarity=0.307 Sum_probs=71.4
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcCHHHHHHHHHhcCC--CeecCCCcEEEEEEe
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGLDR--TEFGRKGRRLRVEWT 125 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--kg~aFV~F~~~~~A~~A~~~lng--~~ig~~gr~l~V~~a 125 (425)
.+.+.++|||+|||+.+|+++|+++|++||+|.+|.|. +|||||+|++.++|++|+..|++ ..| .|++|.|.|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l--~Gr~l~V~~A 89 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVL--RGQPIYIQFS 89 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEE--TTEECCBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceE--CCEEEEEEEc
Confidence 45678999999999999999999999999999999996 79999999999999999998864 678 8999999999
Q ss_pred cccc
Q 014384 126 KHER 129 (425)
Q Consensus 126 ~~~~ 129 (425)
+...
T Consensus 90 ~~~~ 93 (105)
T 1sjq_A 90 NHKE 93 (105)
T ss_dssp SSSS
T ss_pred CCCC
Confidence 8754
No 32
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=7.9e-18 Score=131.38 Aligned_cols=78 Identities=33% Similarity=0.536 Sum_probs=73.7
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEecccc
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 129 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~~ 129 (425)
.....++|||+|||+.+|+++|.++|++||.|..|.|.++||||+|.+.++|++|+..|||..| +|+.|.|.|+....
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEV--KGKRINVELSTKGQ 82 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHHHTTCEE--TTEECEEEESCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEEEECCCCC
Confidence 3467899999999999999999999999999999999999999999999999999999999999 89999999998754
No 33
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=131.20 Aligned_cols=78 Identities=32% Similarity=0.557 Sum_probs=73.8
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEecccc
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 129 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~~ 129 (425)
.....++|||+|||+.+|+++|+++|++||.|..|.|.++||||+|.+.++|.+|+..|||..| +|+.|.|.|+....
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF--QGKRMHVQLSTSRL 83 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHHTTEEE--TTEEEEEEESSCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHHhCCCee--CCcEEEEEEccCCC
Confidence 4567899999999999999999999999999999999999999999999999999999999999 89999999998754
No 34
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.74 E-value=1.5e-17 Score=133.25 Aligned_cols=77 Identities=23% Similarity=0.494 Sum_probs=73.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEeccccC
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERG 130 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~~~ 130 (425)
.+.++|||+|||+.+|+++|+++|.+||.|..|.|.++||||+|.+.++|++||..|||..| +|+.|.|.|+.....
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDL--EGENIEIVFAKPPDQ 85 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHHHTTEEE--TTEEEEEEECCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHHHCCCcc--CCCEEEEEEcCCCcc
Confidence 45789999999999999999999999999999999999999999999999999999999999 899999999987653
No 35
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.74 E-value=1.4e-18 Score=142.12 Aligned_cols=100 Identities=21% Similarity=0.392 Sum_probs=87.8
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-----CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEe
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-----SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 125 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~-----kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a 125 (425)
+...++|||+|||+.+|+++|.++|+.||.|..|.|. +|||||+|.+.++|.+|+..|||..| +|+.|.|.|+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~~a 82 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNV--SNRYLVVLYY 82 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBS--SSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEEEe
Confidence 4567899999999999999999999999999999993 79999999999999999999999999 8999999999
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCc
Q 014384 126 KHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGK 177 (425)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~ 177 (425)
...... .++ ....++++|+++|++||.
T Consensus 83 ~~~~~~------------------------~~~-~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 83 NANRAF------------------------QKM-DTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CHHHHT------------------------TTS-CHHHHHHHHHHHHHHHCC
T ss_pred cCChhh------------------------hhh-hHhHhHHHHHHHHHHhCC
Confidence 865422 124 456668999999999984
No 36
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.74 E-value=9.6e-18 Score=132.88 Aligned_cols=78 Identities=27% Similarity=0.490 Sum_probs=72.4
Q ss_pred hhcCCCceEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEecc
Q 014384 49 AFEAMMRPIFCGNFEY-DARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKH 127 (425)
Q Consensus 49 ~~~~~~~~l~V~nL~~-~~t~~~L~~lF~~~G~V~~v~i~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~ 127 (425)
......++|||+|||. .+|+++|.++|++||.|..|.|++|||||+|.+.++|.+|+..|||..| +|+.|.|+|++.
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~a~~ 94 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEXESQEMN--FGKKLILEVSSS 94 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHHHHTTSEE--TTEECEEEECCC
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEEEecCC
Confidence 3556789999999998 9999999999999999999999999999999999999999999999999 899999999875
Q ss_pred c
Q 014384 128 E 128 (425)
Q Consensus 128 ~ 128 (425)
.
T Consensus 95 ~ 95 (97)
T 2xnq_A 95 N 95 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 37
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=4.8e-18 Score=134.35 Aligned_cols=78 Identities=26% Similarity=0.457 Sum_probs=72.0
Q ss_pred hcCCCceEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEeccc
Q 014384 50 FEAMMRPIFCGNFEY-DARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHE 128 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~-~~t~~~L~~lF~~~G~V~~v~i~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~ 128 (425)
...+.++|||+|||+ .+|+++|.++|++||.|..|.|++|||||+|.+.++|.+|+..|||..| .|+.|.|+|+...
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMN--FGKKLILEVSSSN 83 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSC--BTTTBCEEEEECC
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCee--CCcEEEEEEcCcC
Confidence 446789999999998 9999999999999999999999999999999999999999999999999 7999999999865
Q ss_pred c
Q 014384 129 R 129 (425)
Q Consensus 129 ~ 129 (425)
.
T Consensus 84 ~ 84 (96)
T 2kvi_A 84 A 84 (96)
T ss_dssp C
T ss_pred C
Confidence 4
No 38
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.74 E-value=7.5e-18 Score=136.65 Aligned_cols=76 Identities=18% Similarity=0.417 Sum_probs=70.6
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEE
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 122 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V 122 (425)
+.+.++|||+||++.+|+++|.++|++||+|..|.| ++|||||+|.+.++|++|++.|||..| +|+.|.|
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~--~gr~i~V 80 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSV--MGNIIHA 80 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEE
Confidence 356789999999999999999999999999999988 379999999999999999999999999 8999999
Q ss_pred EEeccc
Q 014384 123 EWTKHE 128 (425)
Q Consensus 123 ~~a~~~ 128 (425)
+++...
T Consensus 81 ~~a~~~ 86 (110)
T 3s8s_A 81 QLDIKG 86 (110)
T ss_dssp EECSTT
T ss_pred EECCCC
Confidence 998654
No 39
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.9e-18 Score=135.85 Aligned_cols=77 Identities=21% Similarity=0.247 Sum_probs=70.4
Q ss_pred cCCCceEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcCHHHHHHHHHhcCCC--eecCCCcEEEEEEe
Q 014384 51 EAMMRPIFCGNFEY-DARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGLDRT--EFGRKGRRLRVEWT 125 (425)
Q Consensus 51 ~~~~~~l~V~nL~~-~~t~~~L~~lF~~~G~V~~v~i~--kg~aFV~F~~~~~A~~A~~~lng~--~ig~~gr~l~V~~a 125 (425)
..+.++|||+|||+ .+|+++|.++|.+||+|..|.|. +|||||+|++.++|.+|+..||+. .| .|++|.|+|+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~--~Gr~l~V~~a 89 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALV--FGKPVRVHLS 89 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEE--TTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceE--CCcEEEEEEC
Confidence 35688999999999 99999999999999999999995 699999999999999999999875 47 8999999999
Q ss_pred cccc
Q 014384 126 KHER 129 (425)
Q Consensus 126 ~~~~ 129 (425)
....
T Consensus 90 ~~~~ 93 (102)
T 1x4d_A 90 QKYK 93 (102)
T ss_dssp CCCT
T ss_pred CCCC
Confidence 8655
No 40
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.73 E-value=4.7e-18 Score=133.88 Aligned_cols=76 Identities=20% Similarity=0.390 Sum_probs=68.3
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCC--eeEEEE--------eCCEEEEEEcCHHHHHHHHHhcCCCe----ecC
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGK--VDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTE----FGR 115 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~--V~~v~i--------~kg~aFV~F~~~~~A~~A~~~lng~~----ig~ 115 (425)
....+.||||+|||+.+|+++|.++|++||. |.+|.| ++|||||+|.+.++|.+|++.|||.. |
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i-- 82 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKI-- 82 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEE--
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceE--
Confidence 3467899999999999999999999999995 567877 37999999999999999999999974 6
Q ss_pred CCcEEEEEEecc
Q 014384 116 KGRRLRVEWTKH 127 (425)
Q Consensus 116 ~gr~l~V~~a~~ 127 (425)
+|+.|.|+||+.
T Consensus 83 ~Gr~i~V~~Aks 94 (95)
T 2lkz_A 83 DGKTIGVDFAKS 94 (95)
T ss_dssp TTEEEEEEECCC
T ss_pred CCEEEEEEEccC
Confidence 899999999974
No 41
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.8e-17 Score=130.63 Aligned_cols=78 Identities=21% Similarity=0.396 Sum_probs=73.2
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhc--CCeeEEEEeCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEecc
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRY--GKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKH 127 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~--G~V~~v~i~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~ 127 (425)
.....++|||+|||+.+|+++|+++|.+| |.|..|.+.+|||||+|.+.++|.+|+..|||..| +|+.|.|.|+..
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~~a~~ 88 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVL--DGSPIEVTLAKP 88 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEEE--TTEEEEEECCCC
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHHHhCCCEe--CCcEEEEEECCC
Confidence 34567899999999999999999999999 99999999999999999999999999999999999 899999999987
Q ss_pred cc
Q 014384 128 ER 129 (425)
Q Consensus 128 ~~ 129 (425)
..
T Consensus 89 ~~ 90 (99)
T 2cpd_A 89 VD 90 (99)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 42
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.72 E-value=2.2e-17 Score=127.22 Aligned_cols=74 Identities=26% Similarity=0.528 Sum_probs=69.8
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEE
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 122 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V 122 (425)
....++|||+|||+.+|+++|.++|++||.|..|.| .+|||||+|.+.++|.+|+..|||..| +|+.|.|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 81 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL--FGRTIRV 81 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEE
Confidence 456799999999999999999999999999999998 489999999999999999999999999 8999999
Q ss_pred EEec
Q 014384 123 EWTK 126 (425)
Q Consensus 123 ~~a~ 126 (425)
+|++
T Consensus 82 ~~ak 85 (85)
T 3mdf_A 82 NLAK 85 (85)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9974
No 43
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.72 E-value=1.7e-17 Score=134.21 Aligned_cols=79 Identities=25% Similarity=0.477 Sum_probs=73.2
Q ss_pred hhcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEeccc
Q 014384 49 AFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHE 128 (425)
Q Consensus 49 ~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~ 128 (425)
......++|||+|||..+|+++|.++|++||.|..|.|.+|||||+|.+.++|++|+..|||..| +|+.|.|.|+...
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSF--ANQPLEVVYSKLP 103 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHHHTTCEE--TTEECEEESCSCC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEEEecCC
Confidence 34567799999999999999999999999999999999999999999999999999999999999 8999999999865
Q ss_pred c
Q 014384 129 R 129 (425)
Q Consensus 129 ~ 129 (425)
.
T Consensus 104 ~ 104 (108)
T 2jvo_A 104 A 104 (108)
T ss_dssp C
T ss_pred C
Confidence 4
No 44
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.1e-17 Score=130.61 Aligned_cols=78 Identities=21% Similarity=0.466 Sum_probs=72.7
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 123 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~ 123 (425)
.....++|||+|||+.+|+++|.++|++||.|..|.|. +|||||+|.+.++|.+|+..|||..| .|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKI--LGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEE--TTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCc--CCCeEEEE
Confidence 44667999999999999999999999999999999994 59999999999999999999999999 89999999
Q ss_pred Eecccc
Q 014384 124 WTKHER 129 (425)
Q Consensus 124 ~a~~~~ 129 (425)
|+....
T Consensus 89 ~a~~~~ 94 (103)
T 2cqi_A 89 WATTPS 94 (103)
T ss_dssp ECCCTT
T ss_pred ECCCCc
Confidence 998755
No 45
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.72 E-value=1.8e-17 Score=144.48 Aligned_cols=131 Identities=19% Similarity=0.312 Sum_probs=72.5
Q ss_pred EEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEeccccCCC-CCC---CCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHH
Q 014384 93 IYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIR-RPG---GGSSARRPSTNTRPSKTLFVINFDPYHTRTRDL 168 (425)
Q Consensus 93 V~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~~~~~-~~~---~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L 168 (425)
.+|++.++|..|+..|++......|+.+.+.++....... ... .............+.++|||+|| |..+++++|
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nL-p~~~t~~~L 89 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSI-HEEAQEDEI 89 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESC-CTTCCHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCC-CCCCCHHHH
Confidence 7899999999999999998774457777777643322100 000 00001223344566789999999 789999999
Q ss_pred HhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeCC
Q 014384 169 ERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDD 224 (425)
Q Consensus 169 ~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~ 224 (425)
+++|.+||.|..|.|+ +|||||+|.+.++|..||..|||..|.|+.|.|.|+..+.
T Consensus 90 ~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 153 (165)
T 1rk8_A 90 QEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKG 153 (165)
T ss_dssp HHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC
T ss_pred HHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 9999999999999996 5799999999999999999999999999999999998864
No 46
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.72 E-value=3.1e-17 Score=127.24 Aligned_cols=74 Identities=19% Similarity=0.473 Sum_probs=69.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE---------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEE
Q 014384 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM---------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 123 (425)
Q Consensus 53 ~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i---------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~ 123 (425)
..++|||+|||.++|+++|.++|++||.|..|.| .+|||||+|.+.++|.+|+..|||..| +|+.|.|+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~ 80 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQI--DGQEITAT 80 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeE--CCeEEEEE
Confidence 4689999999999999999999999999999998 589999999999999999999999999 89999999
Q ss_pred Eeccc
Q 014384 124 WTKHE 128 (425)
Q Consensus 124 ~a~~~ 128 (425)
++...
T Consensus 81 ~a~~~ 85 (88)
T 4a8x_A 81 AVLAP 85 (88)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 99754
No 47
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3e-17 Score=132.89 Aligned_cols=78 Identities=40% Similarity=0.698 Sum_probs=72.6
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-----CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-----SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 124 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~-----kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~ 124 (425)
.....++|||+|||+.+|+++|.++|.+||.|..|.|. +|||||+|.+.++|++||+.||+..| +|+.|.|+|
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~V~~ 95 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDY--DGYRLRVEF 95 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEE--TTEECEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEEE
Confidence 44567899999999999999999999999999999993 78999999999999999999999999 899999999
Q ss_pred ecccc
Q 014384 125 TKHER 129 (425)
Q Consensus 125 a~~~~ 129 (425)
++...
T Consensus 96 a~~~~ 100 (109)
T 1x4a_A 96 PRSGR 100 (109)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 98765
No 48
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.7e-17 Score=132.97 Aligned_cols=76 Identities=21% Similarity=0.271 Sum_probs=71.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeC-CEEEEEEcCHHHHHHHHHhcCCCeecCCC-----cEEEEEEe
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-GFAFIYMDDERDAEDAIRGLDRTEFGRKG-----RRLRVEWT 125 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~k-g~aFV~F~~~~~A~~A~~~lng~~ig~~g-----r~l~V~~a 125 (425)
...++|||+|||+++|+++|+++|.+||+|..|.|.. |||||+|.+.++|++||+.|||..| +| +.|.|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~~~~~~i~V~~a 90 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF--RSHEGETAYIRVKVD 90 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHHSSSEEE--ECTTSCEEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHHHCcCCc--cCCcCcceEEEEEeC
Confidence 4578999999999999999999999999999999976 9999999999999999999999999 78 99999999
Q ss_pred cccc
Q 014384 126 KHER 129 (425)
Q Consensus 126 ~~~~ 129 (425)
....
T Consensus 91 ~~~~ 94 (108)
T 1x4c_A 91 GPRS 94 (108)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 8754
No 49
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3.9e-17 Score=129.70 Aligned_cols=78 Identities=28% Similarity=0.460 Sum_probs=72.4
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEE
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 122 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V 122 (425)
....++|||+|||+.+|+++|.++|.+||+|..|.|. +|||||+|.+.++|.+|+..|||..| +|+.|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V 82 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVF--QGRMLHV 82 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEES--SSCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEE
Confidence 4567899999999999999999999999999999993 69999999999999999999999999 8999999
Q ss_pred EEeccccC
Q 014384 123 EWTKHERG 130 (425)
Q Consensus 123 ~~a~~~~~ 130 (425)
.++.....
T Consensus 83 ~~a~~~~~ 90 (99)
T 1whw_A 83 LPSTIKKE 90 (99)
T ss_dssp EECCCCST
T ss_pred EEcCCCcc
Confidence 99987653
No 50
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.72 E-value=7.9e-18 Score=131.72 Aligned_cols=74 Identities=15% Similarity=0.306 Sum_probs=66.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEE--------eCCEEEEEEcCHHHHHHHHHhcC-CCeecCCCcEEEEE
Q 014384 54 MRPIFCGNFEYDARQSDLERLFRRYG-KVDRVDM--------KSGFAFIYMDDERDAEDAIRGLD-RTEFGRKGRRLRVE 123 (425)
Q Consensus 54 ~~~l~V~nL~~~~t~~~L~~lF~~~G-~V~~v~i--------~kg~aFV~F~~~~~A~~A~~~ln-g~~ig~~gr~l~V~ 123 (425)
+++|||+|||+++|+++|.++|++|| +|.+|.| ++|||||+|.+.++|++||+.|+ +..| +|+.|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~--~gr~i~V~ 78 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNI--LGQKVSMH 78 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEE--TTEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEE--CCEEEEEE
Confidence 36899999999999999999999999 8999987 37999999999999999998875 5678 89999999
Q ss_pred Eecccc
Q 014384 124 WTKHER 129 (425)
Q Consensus 124 ~a~~~~ 129 (425)
|+.+..
T Consensus 79 ~a~~~~ 84 (91)
T 2lxi_A 79 YSDPKP 84 (91)
T ss_dssp CCCSCC
T ss_pred EcCCCC
Confidence 998654
No 51
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.3e-17 Score=130.52 Aligned_cols=78 Identities=15% Similarity=0.241 Sum_probs=70.4
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcCHHHHHHHHHhcC--CCeecCCCcEEEEEEe
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGLD--RTEFGRKGRRLRVEWT 125 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--kg~aFV~F~~~~~A~~A~~~ln--g~~ig~~gr~l~V~~a 125 (425)
...+.++|||+|||+.+|+++|.++|++||.|..|.|. +|||||+|.+.++|.+|+..|+ +..| .|+.|.|.|+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~--~Gr~l~V~~a 88 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHL--RNQPIYIQYS 88 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEE--TTEECEEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceE--CCcEEEEEEc
Confidence 34567899999999999999999999999999999985 7999999999999999999775 5678 8999999999
Q ss_pred cccc
Q 014384 126 KHER 129 (425)
Q Consensus 126 ~~~~ 129 (425)
....
T Consensus 89 ~~~~ 92 (101)
T 2cq1_A 89 NHKE 92 (101)
T ss_dssp SCSS
T ss_pred Cccc
Confidence 8655
No 52
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.5e-17 Score=132.00 Aligned_cols=79 Identities=11% Similarity=0.169 Sum_probs=70.3
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEeccc
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHE 128 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~ 128 (425)
..+.++|||+|||+.+|+++|.++|++||.|..|.|. +|||||+|.+.++|.+|+..||+..+.+.|+.|.|+|+...
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~ 91 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSK 91 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCc
Confidence 4567899999999999999999999999999999985 79999999999999999998977542228999999999875
Q ss_pred c
Q 014384 129 R 129 (425)
Q Consensus 129 ~ 129 (425)
.
T Consensus 92 ~ 92 (104)
T 1wex_A 92 R 92 (104)
T ss_dssp S
T ss_pred c
Confidence 4
No 53
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.5e-17 Score=130.39 Aligned_cols=78 Identities=24% Similarity=0.488 Sum_probs=73.0
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 123 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~ 123 (425)
.....++|||+|||+.+|+++|.++|.+||+|..|.|. +|||||+|.+.++|++|+..|||..| +|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~ 88 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVV--EGRKIEVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEEE
Confidence 45667999999999999999999999999999999995 78999999999999999999999999 89999999
Q ss_pred Eecccc
Q 014384 124 WTKHER 129 (425)
Q Consensus 124 ~a~~~~ 129 (425)
|+....
T Consensus 89 ~a~~~~ 94 (103)
T 2cq3_A 89 NATARV 94 (103)
T ss_dssp ECCSSC
T ss_pred EcccCC
Confidence 998765
No 54
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.71 E-value=2.6e-17 Score=127.43 Aligned_cols=75 Identities=20% Similarity=0.505 Sum_probs=67.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEE
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 123 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~ 123 (425)
...++|||+|||..+|+++|.++|++||.|..|.|. +|||||+|.+.++|++|+..|||..| +|+.|.|.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~ 81 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL--GGRQIRTN 81 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEE
Confidence 456899999999999999999999999999999983 68999999999999999999999999 89999999
Q ss_pred Eeccc
Q 014384 124 WTKHE 128 (425)
Q Consensus 124 ~a~~~ 128 (425)
|+...
T Consensus 82 ~a~~k 86 (87)
T 3bs9_A 82 WATRK 86 (87)
T ss_dssp EEC--
T ss_pred ecCCC
Confidence 99753
No 55
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.3e-17 Score=134.82 Aligned_cols=78 Identities=21% Similarity=0.310 Sum_probs=71.0
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcCHHHHHHHHHhcCC--CeecCCCcEEEEEEe
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGLDR--TEFGRKGRRLRVEWT 125 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--kg~aFV~F~~~~~A~~A~~~lng--~~ig~~gr~l~V~~a 125 (425)
...+.++|||+|||+++|+++|+++|++||+|..|.|. +|||||+|++.++|.+|+..|++ ..| .|+.|.|.|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l--~Gr~l~V~~a 104 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVL--RGQPIYIQFS 104 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCB--TTBCCEEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceE--CCeEEEEEEc
Confidence 34567899999999999999999999999999999995 79999999999999999998985 567 8999999999
Q ss_pred cccc
Q 014384 126 KHER 129 (425)
Q Consensus 126 ~~~~ 129 (425)
+...
T Consensus 105 ~~k~ 108 (119)
T 2ad9_A 105 NHKE 108 (119)
T ss_dssp SSSS
T ss_pred cCCC
Confidence 8755
No 56
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.8e-17 Score=129.92 Aligned_cols=76 Identities=22% Similarity=0.354 Sum_probs=71.4
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEe-----CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEE
Q 014384 52 AMMRPIFCGNFEYDARQSDLE----RLFRRYGKVDRVDMK-----SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 122 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~----~lF~~~G~V~~v~i~-----kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V 122 (425)
...++|||+|||+.+|+++|+ ++|++||+|..|.|. +|||||+|.+.++|++|+..|||..| +|+.|.|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~--~gr~l~V 84 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKI--GSKKILV 84 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEE--TTEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEE
Confidence 456899999999999999999 999999999999996 89999999999999999999999999 8999999
Q ss_pred EEecccc
Q 014384 123 EWTKHER 129 (425)
Q Consensus 123 ~~a~~~~ 129 (425)
.++....
T Consensus 85 ~~a~~~~ 91 (96)
T 2dgx_A 85 SLATGAS 91 (96)
T ss_dssp EECCCSS
T ss_pred EEcCCCC
Confidence 9997654
No 57
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.71 E-value=3e-17 Score=133.10 Aligned_cols=77 Identities=26% Similarity=0.576 Sum_probs=72.3
Q ss_pred cCCCceEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEecccc
Q 014384 51 EAMMRPIFCGNFEYD-ARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 129 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~-~t~~~L~~lF~~~G~V~~v~i~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~~ 129 (425)
....++|||+|||+. +|+++|+++|.+||.|..|.|++|||||+|.+.++|++|+..|||..| +|+.|.|+|+....
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGENGRVL--AGQTLDINMAGEPK 101 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHHHTTCEE--TTEECCEEESCCCC
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEEECCCCC
Confidence 345689999999999 999999999999999999999999999999999999999999999999 89999999997544
No 58
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.71 E-value=8.2e-17 Score=131.55 Aligned_cols=80 Identities=20% Similarity=0.462 Sum_probs=73.3
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 121 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~ 121 (425)
.....++|||+|||..+|+++|+++|.+||.|..|.|. +|||||+|.+.++|++||..|||..| +|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 88 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL--GGRQIR 88 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEE--TTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCEEEE
Confidence 44677999999999999999999999999999999983 58999999999999999999999999 899999
Q ss_pred EEEeccccCC
Q 014384 122 VEWTKHERGI 131 (425)
Q Consensus 122 V~~a~~~~~~ 131 (425)
|.|+......
T Consensus 89 V~~a~~~~~~ 98 (115)
T 2dgo_A 89 TNWATRKPPA 98 (115)
T ss_dssp EEESSCCCCC
T ss_pred EEEccCCCCC
Confidence 9999876533
No 59
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.71 E-value=2.2e-17 Score=133.73 Aligned_cols=77 Identities=21% Similarity=0.242 Sum_probs=70.7
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEe----CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYG-KVDRVDMK----SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 124 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G-~V~~v~i~----kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~ 124 (425)
.+....+|||+|||+++|+++|+++|.+|| +|..|.|. +|||||+|.+.++|++||..|||..| +|+.|.|++
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l--~Gr~i~V~~ 101 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEF--RGSVITVER 101 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEE--TTEEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEEE
Confidence 456678999999999999999999999999 89999983 89999999999999999999999999 899999999
Q ss_pred eccc
Q 014384 125 TKHE 128 (425)
Q Consensus 125 a~~~ 128 (425)
+...
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8754
No 60
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.3e-17 Score=131.20 Aligned_cols=78 Identities=14% Similarity=0.345 Sum_probs=72.8
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 123 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~ 123 (425)
.....++|||+|||+.+|+++|.++|.+||+|..|.|. +|||||+|.+.++|.+|+..|||..| +|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV--ATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBS--SSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEEE
Confidence 44578999999999999999999999999999999985 78999999999999999999999999 89999999
Q ss_pred Eecccc
Q 014384 124 WTKHER 129 (425)
Q Consensus 124 ~a~~~~ 129 (425)
|+....
T Consensus 89 ~a~~~~ 94 (103)
T 2d9p_A 89 LAQRKE 94 (103)
T ss_dssp ECSSCC
T ss_pred Eecccc
Confidence 998765
No 61
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=7e-17 Score=127.20 Aligned_cols=76 Identities=24% Similarity=0.502 Sum_probs=71.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEE
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 123 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~ 123 (425)
...++|||+|||..+|+++|.++|++||.|..|.|. +|||||+|.+.++|++|+..|||..| +|+.|.|.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~ 80 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFEL--AGRPMRVG 80 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCS--SSSCCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCee--CCcEEEEE
Confidence 467899999999999999999999999999999983 68999999999999999999999999 89999999
Q ss_pred Eecccc
Q 014384 124 WTKHER 129 (425)
Q Consensus 124 ~a~~~~ 129 (425)
|+....
T Consensus 81 ~a~~~~ 86 (95)
T 2dnz_A 81 HVTERL 86 (95)
T ss_dssp ESSCCC
T ss_pred Eccccc
Confidence 998754
No 62
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=3.6e-17 Score=126.08 Aligned_cols=75 Identities=23% Similarity=0.471 Sum_probs=69.8
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcCHHHHHHHHHhc-CCCeecCCCcEEEEEEec
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGL-DRTEFGRKGRRLRVEWTK 126 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--kg~aFV~F~~~~~A~~A~~~l-ng~~ig~~gr~l~V~~a~ 126 (425)
.....++|||+|||..+|+++|.++|.+||.|..|.|. +|||||+|.+.++|.+|+..| ||..| +|+.|.|+|++
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~--~g~~l~v~~ak 85 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIV--NGRRLNVKWGR 85 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEE--TTEECCEEECC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeE--CCCEEEEEecC
Confidence 34567899999999999999999999999999999995 699999999999999999988 99999 89999999974
No 63
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.6e-17 Score=130.26 Aligned_cols=78 Identities=23% Similarity=0.359 Sum_probs=72.4
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 121 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~ 121 (425)
.....++|||+|||+.+|+++|.++|++||.|..|.|. +|||||+|.+.++|++|+..|||..| +|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 88 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKL--YGKPIR 88 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBC--SSCBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeE--CCeEEE
Confidence 44667999999999999999999999999999999983 68999999999999999999999999 899999
Q ss_pred EEEecccc
Q 014384 122 VEWTKHER 129 (425)
Q Consensus 122 V~~a~~~~ 129 (425)
|.|+....
T Consensus 89 v~~a~~~~ 96 (105)
T 1x5u_A 89 VNKASAHN 96 (105)
T ss_dssp EEETTTTS
T ss_pred EEECCCCC
Confidence 99998765
No 64
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.70 E-value=4.8e-17 Score=124.71 Aligned_cols=73 Identities=19% Similarity=0.505 Sum_probs=68.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEe
Q 014384 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 125 (425)
Q Consensus 54 ~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a 125 (425)
+.+|||+|||+.+|+++|.++|.+||.|..|.|. +|||||+|.+.++|++|+..|||..| +|+.|.|.|+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~--~g~~l~v~~a 78 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL--NGRPLRINWA 78 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE--TTEECEEEEC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCee--CCcEEEEEec
Confidence 3689999999999999999999999999999883 78999999999999999999999999 8999999999
Q ss_pred ccc
Q 014384 126 KHE 128 (425)
Q Consensus 126 ~~~ 128 (425)
...
T Consensus 79 ~~~ 81 (83)
T 3md1_A 79 AKL 81 (83)
T ss_dssp CCC
T ss_pred CcC
Confidence 764
No 65
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.8e-17 Score=130.85 Aligned_cols=78 Identities=33% Similarity=0.549 Sum_probs=72.2
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 121 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~ 121 (425)
.....++|||+|||+.+|+++|.++|++||+|..|.|. +|||||+|.+.++|.+|+..|||..| +|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 88 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGY--DHLILN 88 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCee--CCcEEE
Confidence 34667999999999999999999999999999999983 57999999999999999999999999 899999
Q ss_pred EEEecccc
Q 014384 122 VEWTKHER 129 (425)
Q Consensus 122 V~~a~~~~ 129 (425)
|.|+....
T Consensus 89 v~~a~~~~ 96 (103)
T 2cq0_A 89 VEWAKPST 96 (103)
T ss_dssp EEESSCCC
T ss_pred EEECCCCC
Confidence 99998754
No 66
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=4.4e-17 Score=128.06 Aligned_cols=75 Identities=25% Similarity=0.535 Sum_probs=69.9
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 121 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~ 121 (425)
.....++|||+|||+.+|+++|.++|++||+|..|.|. +|||||+|.+.++|++|+..|||..| .|+.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 89 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQL--FGRVIK 89 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEE--TTEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCee--CCcEEE
Confidence 34567899999999999999999999999999999993 68999999999999999999999999 899999
Q ss_pred EEEec
Q 014384 122 VEWTK 126 (425)
Q Consensus 122 V~~a~ 126 (425)
|+||+
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99984
No 67
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=4.1e-17 Score=129.17 Aligned_cols=77 Identities=23% Similarity=0.415 Sum_probs=71.5
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcCHHHHHHHHHhcCCCeecCC--CcEEEEEEec
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGLDRTEFGRK--GRRLRVEWTK 126 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--kg~aFV~F~~~~~A~~A~~~lng~~ig~~--gr~l~V~~a~ 126 (425)
..+.++|||+|||+.+|+++|.++|++||+|..|.|. +|||||+|.+.++|++|+..|||..| . |+.|.|+|+.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~~~g~~l~V~~a~ 91 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPL--GGPDRRLRVDFAK 91 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBC--SSSSCBCEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEe--CCCCcEEEEEECC
Confidence 4567899999999999999999999999999999996 67999999999999999999999999 7 9999999998
Q ss_pred ccc
Q 014384 127 HER 129 (425)
Q Consensus 127 ~~~ 129 (425)
...
T Consensus 92 ~~~ 94 (97)
T 1why_A 92 SGP 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 68
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.4e-17 Score=130.19 Aligned_cols=78 Identities=26% Similarity=0.598 Sum_probs=72.3
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 121 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~ 121 (425)
.....++|||+|||+.+|+++|.++|.+||+|..|.|. +|||||+|.+.++|.+|+..|||..| +|+.|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 85 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV--DGRQIR 85 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCT--TSCCCE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE--CCeEEE
Confidence 34567999999999999999999999999999999993 68999999999999999999999999 899999
Q ss_pred EEEecccc
Q 014384 122 VEWTKHER 129 (425)
Q Consensus 122 V~~a~~~~ 129 (425)
|.|+....
T Consensus 86 v~~a~~~~ 93 (102)
T 1x5s_A 86 VDQAGKSS 93 (102)
T ss_dssp EEEEECCC
T ss_pred EEECCCCC
Confidence 99998765
No 69
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.70 E-value=5.4e-17 Score=128.20 Aligned_cols=75 Identities=24% Similarity=0.450 Sum_probs=70.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEE
Q 014384 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 124 (425)
Q Consensus 53 ~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~ 124 (425)
+.++|||+|||..+|+++|.++|++||.|..|.|. +|||||+|.+.++|.+|+..|||..| +|+.|.|.|
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~ 78 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQL--GSRFLKCGY 78 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEEE
Confidence 36799999999999999999999999999999983 79999999999999999999999999 899999999
Q ss_pred ecccc
Q 014384 125 TKHER 129 (425)
Q Consensus 125 a~~~~ 129 (425)
+....
T Consensus 79 a~~~~ 83 (96)
T 2x1f_A 79 SSNSD 83 (96)
T ss_dssp CSCSS
T ss_pred cCCCC
Confidence 98754
No 70
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=3.7e-17 Score=130.87 Aligned_cols=78 Identities=36% Similarity=0.597 Sum_probs=72.3
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 121 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~ 121 (425)
.....++|||+|||+.+|+++|.++|.+||.|..|.|. +|||||+|.+.++|++|+..|||..| +|+.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 86 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAEL--DGRELR 86 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCB--TTBCCE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEE--CCcEEE
Confidence 34667999999999999999999999999999999983 68999999999999999999999999 899999
Q ss_pred EEEecccc
Q 014384 122 VEWTKHER 129 (425)
Q Consensus 122 V~~a~~~~ 129 (425)
|.|+....
T Consensus 87 V~~a~~~~ 94 (103)
T 2dnm_A 87 VQVARYGR 94 (103)
T ss_dssp EEECSSCC
T ss_pred EEECCcCC
Confidence 99998654
No 71
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.3e-17 Score=128.67 Aligned_cols=76 Identities=20% Similarity=0.350 Sum_probs=70.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEE-EEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEE
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRV-DMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 122 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v-~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V 122 (425)
...++|||+|||+.+|+++|.++|++||.|..| .|. +|||||+|.+.++|++|+..|||..| +|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v 80 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL--CNRPITV 80 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEE--TTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEE
Confidence 467899999999999999999999999999988 772 68999999999999999999999999 8999999
Q ss_pred EEecccc
Q 014384 123 EWTKHER 129 (425)
Q Consensus 123 ~~a~~~~ 129 (425)
.|+....
T Consensus 81 ~~a~~~~ 87 (96)
T 1x5t_A 81 SYAFKKD 87 (96)
T ss_dssp EESCCCC
T ss_pred EEecccC
Confidence 9998755
No 72
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.70 E-value=9.7e-18 Score=141.19 Aligned_cols=118 Identities=29% Similarity=0.333 Sum_probs=73.1
Q ss_pred eeeeEEEEeCCCCcccccccCCcceeecccccccchhhhhhhcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-
Q 014384 9 QCHYLLIVYSHSVWPVQKKYLPRRLYVLGFRRSHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK- 87 (425)
Q Consensus 9 ~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~- 87 (425)
-|+|.|+.|....++..+...-..-....- ...............++|||+|||+.+|+++|.++|++||.|..|.|.
T Consensus 3 ~~~~~~~~~~~~~~~~~a~~~~~g~~~~g~-~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~ 81 (135)
T 2lea_A 3 SSHHHHHHSSGLVPRGSHMASMTGGQQMGR-GSMSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPR 81 (135)
T ss_dssp ---------------------------------CCSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCC
T ss_pred ccccccccccCCCchhhhhhhccCCCCCCC-CCCCcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe
Confidence 388889988887776555432211110000 000011112344557899999999999999999999999999999983
Q ss_pred -------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEecccc
Q 014384 88 -------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 129 (425)
Q Consensus 88 -------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~~ 129 (425)
+|||||+|.+.++|++||..|||..| .|+.|.|.|++...
T Consensus 82 ~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i--~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 82 DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL--DGRELRVQMARYGR 128 (135)
T ss_dssp CSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCS--SSSCCEEEECCCCC
T ss_pred cCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEEEECCCCC
Confidence 68999999999999999999999999 89999999998754
No 73
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.70 E-value=7.9e-17 Score=131.95 Aligned_cols=78 Identities=23% Similarity=0.458 Sum_probs=72.4
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 122 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~-------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V 122 (425)
+....++|||+|||..+|+++|.++|++||.|..|.|. +|||||+|.+.++|++|+..|||..| +|+.|.|
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~--~g~~l~V 80 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSL--HGKAIKV 80 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBC--SSSBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEE
Confidence 34667899999999999999999999999999999994 49999999999999999999999999 8999999
Q ss_pred EEecccc
Q 014384 123 EWTKHER 129 (425)
Q Consensus 123 ~~a~~~~ 129 (425)
+|++...
T Consensus 81 ~~a~~~~ 87 (116)
T 2fy1_A 81 EQAKKPS 87 (116)
T ss_dssp EECCCSS
T ss_pred EECCCCC
Confidence 9998765
No 74
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.3e-17 Score=128.37 Aligned_cols=76 Identities=26% Similarity=0.437 Sum_probs=70.4
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 121 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~ 121 (425)
.+.+.++|||+|||+.+|+++|.++|++||.|..|.|. +|||||+|.+.++|.+|+..|||..| +|+.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 88 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL--DGRRIR 88 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEE--TTEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE--CCEEEE
Confidence 44567899999999999999999999999999999983 68999999999999999999999999 899999
Q ss_pred EEEecc
Q 014384 122 VEWTKH 127 (425)
Q Consensus 122 V~~a~~ 127 (425)
|+|++.
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999864
No 75
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.5e-17 Score=130.10 Aligned_cols=78 Identities=26% Similarity=0.515 Sum_probs=72.5
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 121 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~ 121 (425)
.....++|||+|||+.+|+++|.++|.+||+|..|.| .+|||||+|.+.++|++|+..|||..| +|+.|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 85 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL--FGRTIR 85 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEE--TTEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCcEEE
Confidence 3456799999999999999999999999999999998 379999999999999999999999999 899999
Q ss_pred EEEecccc
Q 014384 122 VEWTKHER 129 (425)
Q Consensus 122 V~~a~~~~ 129 (425)
|.|+....
T Consensus 86 V~~a~~~~ 93 (102)
T 2cqb_A 86 VNLAKPMR 93 (102)
T ss_dssp EEECCCCC
T ss_pred EEeCCCCC
Confidence 99998765
No 76
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2e-16 Score=127.79 Aligned_cols=77 Identities=21% Similarity=0.289 Sum_probs=71.9
Q ss_pred CCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEec-cEEEEEEcCHHHHHHHHHHcCCCccCC-----eEEEEEE
Q 014384 146 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRR-NFAFVQYEVQEDATRALDATNMSKLTD-----RVISVEY 219 (425)
Q Consensus 146 ~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~~-g~afV~f~~~~~A~~A~~~l~g~~~~g-----~~i~v~~ 219 (425)
.....++|||+|| |..+++++|+++|.+||.|..|.|.. |||||+|.+.++|++||+.||+..|.| +.|.|.+
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~ 89 (108)
T 1x4c_A 11 SRRSENRVVVSGL-PPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 89 (108)
T ss_dssp CCSCCCEEEEESC-CSSCCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEe
Confidence 3456789999999 89999999999999999999999987 999999999999999999999999999 9999999
Q ss_pred eeeC
Q 014384 220 AVRD 223 (425)
Q Consensus 220 a~~~ 223 (425)
+...
T Consensus 90 a~~~ 93 (108)
T 1x4c_A 90 DGPR 93 (108)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 9873
No 77
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.70 E-value=6.7e-17 Score=129.82 Aligned_cols=77 Identities=23% Similarity=0.454 Sum_probs=71.4
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-------CCEEEEEEcCHHHHHHHHHhcCCCeecCCC---cEE
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKG---RRL 120 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~-------kg~aFV~F~~~~~A~~A~~~lng~~ig~~g---r~l 120 (425)
....++|||+|||+.+|+++|.++|++||.|..|.|. +|||||+|.+.++|++||..|||..| .| +.|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~gg~~~~l 89 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQT--MPGASSSL 89 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCC--CTTCSSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCcc--CCCCCccE
Confidence 3567999999999999999999999999999999994 68999999999999999999999998 66 999
Q ss_pred EEEEecccc
Q 014384 121 RVEWTKHER 129 (425)
Q Consensus 121 ~V~~a~~~~ 129 (425)
.|.|+....
T Consensus 90 ~V~~a~~~~ 98 (105)
T 2dnh_A 90 VVKFADTDK 98 (105)
T ss_dssp EEEESCSSC
T ss_pred EEEECccCc
Confidence 999998765
No 78
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.5e-17 Score=127.85 Aligned_cols=77 Identities=26% Similarity=0.426 Sum_probs=70.2
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEE-eCCEEEEEEcCHHHHHHHHHhcCC-CeecCCCcEEEEEEecc
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGK-VDRVDM-KSGFAFIYMDDERDAEDAIRGLDR-TEFGRKGRRLRVEWTKH 127 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~-V~~v~i-~kg~aFV~F~~~~~A~~A~~~lng-~~ig~~gr~l~V~~a~~ 127 (425)
....++|||+|||+++|+++|+++|++||. |..+.+ ++|||||+|.+.++|++|+..||| ..| +|+.|.|+|+..
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--~g~~l~v~~a~~ 82 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVEL--HGKIMEVDYSVS 82 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHHHTTTCEE--TTEECEEEECCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHHHHHHHHHccCCeeE--CCEEEEEEEccC
Confidence 456789999999999999999999999999 666555 699999999999999999999999 899 899999999987
Q ss_pred cc
Q 014384 128 ER 129 (425)
Q Consensus 128 ~~ 129 (425)
..
T Consensus 83 ~~ 84 (93)
T 2cqh_A 83 KK 84 (93)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 79
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.1e-16 Score=129.52 Aligned_cols=79 Identities=16% Similarity=0.424 Sum_probs=73.7
Q ss_pred hhcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEec
Q 014384 49 AFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 126 (425)
Q Consensus 49 ~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~ 126 (425)
......++|||+|||..+|+++|.++|.+||.|..|.|. +|||||+|.+.++|.+|+..|||..| .|+.|.|.|+.
T Consensus 20 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~a~ 97 (109)
T 1x4g_A 20 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTI--EGHVVKCYWGK 97 (109)
T ss_dssp HSCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEECCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEE--CCcEEEEEecC
Confidence 355677899999999999999999999999999999996 79999999999999999999999999 89999999998
Q ss_pred ccc
Q 014384 127 HER 129 (425)
Q Consensus 127 ~~~ 129 (425)
...
T Consensus 98 ~~~ 100 (109)
T 1x4g_A 98 ESP 100 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 80
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.6e-17 Score=134.21 Aligned_cols=77 Identities=23% Similarity=0.336 Sum_probs=69.9
Q ss_pred cCCCceEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcCHHHHHHHHHhcCCC--eecCCCcEEEEEEe
Q 014384 51 EAMMRPIFCGNFEYD-ARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGLDRT--EFGRKGRRLRVEWT 125 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~-~t~~~L~~lF~~~G~V~~v~i~--kg~aFV~F~~~~~A~~A~~~lng~--~ig~~gr~l~V~~a 125 (425)
..+.++|||+|||++ +|+++|.++|.+||+|..|.|. +|||||+|++.++|.+|+..||+. .| .|+.|.|+|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l--~Gr~l~V~~a 99 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWF--QGRCVKVDLS 99 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCS--SSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceE--CCEEEEEEEC
Confidence 456899999999998 9999999999999999999995 799999999999999999988754 46 8999999999
Q ss_pred cccc
Q 014384 126 KHER 129 (425)
Q Consensus 126 ~~~~ 129 (425)
....
T Consensus 100 ~~~~ 103 (112)
T 1x4f_A 100 EKYK 103 (112)
T ss_dssp CSCS
T ss_pred cccc
Confidence 7654
No 81
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=9.3e-17 Score=127.29 Aligned_cols=76 Identities=18% Similarity=0.439 Sum_probs=70.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-----------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEE
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-----------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRL 120 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~-----------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l 120 (425)
.+.++|||+|||+.+|+++|.++|++||+|..|.|. +|||||+|.+.++|++|+..|||..| +|+.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l 80 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTV--DGHKL 80 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEE--TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCee--CCeEE
Confidence 467899999999999999999999999999999884 37999999999999999999999999 89999
Q ss_pred EEEEecccc
Q 014384 121 RVEWTKHER 129 (425)
Q Consensus 121 ~V~~a~~~~ 129 (425)
.|.|+....
T Consensus 81 ~V~~a~~~~ 89 (98)
T 2cpf_A 81 EVRISERAT 89 (98)
T ss_dssp EEECSSCSS
T ss_pred EEEEccCCC
Confidence 999998755
No 82
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=7.5e-17 Score=128.34 Aligned_cols=78 Identities=17% Similarity=0.360 Sum_probs=71.8
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 122 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~-------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V 122 (425)
.....++|||+|||+.+|+++|.++|.+||.|..|.|. +|||||+|.+.++|.+|+..|||..| +|+.|.|
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 90 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTI--KENIIKV 90 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEES--SSCEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEE
Confidence 34567899999999999999999999999999999984 59999999999999999999999999 8999999
Q ss_pred EEecccc
Q 014384 123 EWTKHER 129 (425)
Q Consensus 123 ~~a~~~~ 129 (425)
.|+....
T Consensus 91 ~~a~~~~ 97 (100)
T 2do4_A 91 AISNSGP 97 (100)
T ss_dssp EECCCCS
T ss_pred EECCCCC
Confidence 9998654
No 83
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=4.6e-17 Score=129.35 Aligned_cols=77 Identities=31% Similarity=0.553 Sum_probs=72.1
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEeccc
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHE 128 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~ 128 (425)
..+.++|||+|||+.+|+++|+++|.+||+|..|.|. +|||||+|.+.++|++|+..|||..| +|+.|.|.|+...
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~--~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPL--RGKQLRVRFACHS 89 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCB--TTBCCEEEESSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEe--CCceEEEEEcCCC
Confidence 4567899999999999999999999999999999995 69999999999999999999999999 8999999999875
Q ss_pred c
Q 014384 129 R 129 (425)
Q Consensus 129 ~ 129 (425)
.
T Consensus 90 ~ 90 (99)
T 2cpj_A 90 A 90 (99)
T ss_dssp S
T ss_pred C
Confidence 4
No 84
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.69 E-value=5.2e-17 Score=127.91 Aligned_cols=76 Identities=26% Similarity=0.393 Sum_probs=70.3
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 122 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~-------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V 122 (425)
.....++|||+|||+.+|+++|.++|++||+|..|.|. +|||||+|.+.++|.+|+..|||..| +|+.|.|
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V 89 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRL--YGRPINV 89 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEE--TTEECEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEE--CCCEEEE
Confidence 34567899999999999999999999999999999984 68999999999999999999999999 8999999
Q ss_pred EEecc
Q 014384 123 EWTKH 127 (425)
Q Consensus 123 ~~a~~ 127 (425)
.|++.
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 99863
No 85
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=9.8e-17 Score=127.41 Aligned_cols=77 Identities=23% Similarity=0.523 Sum_probs=71.1
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 121 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~ 121 (425)
.....++|||+|||..+|+++|+++|.+||.|..|.| .+|||||+|.+.++|++||. ||+..| +|+.|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~--~g~~l~ 82 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDI--MGKKVE 82 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBS--SSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEE--CCeEEE
Confidence 3456799999999999999999999999999999999 37999999999999999997 999999 899999
Q ss_pred EEEecccc
Q 014384 122 VEWTKHER 129 (425)
Q Consensus 122 V~~a~~~~ 129 (425)
|.++....
T Consensus 83 V~~a~~~~ 90 (99)
T 2dgs_A 83 VKRAEPRD 90 (99)
T ss_dssp EEECCCCC
T ss_pred EEECCCCc
Confidence 99998755
No 86
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=4.9e-17 Score=132.12 Aligned_cols=76 Identities=21% Similarity=0.319 Sum_probs=70.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEecccc
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 129 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~~ 129 (425)
...++|||+|||+.+|+++|.++|++||.|..|.| .+|||||+|.+.++|++|+..|||..| +|+.|.|+|+....
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKF--HHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBS--SSSBCEEEEEETTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEE--CCeEEEEEECCCCc
Confidence 34689999999999999999999999999999999 489999999999999999999999999 89999999997643
No 87
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.69 E-value=6.3e-17 Score=132.33 Aligned_cols=74 Identities=22% Similarity=0.300 Sum_probs=65.1
Q ss_pred CCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEec-cEEEEEEcCHHHHHHHHHHcCCCccCCeE-----EEEEEee
Q 014384 148 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRR-NFAFVQYEVQEDATRALDATNMSKLTDRV-----ISVEYAV 221 (425)
Q Consensus 148 ~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~~-g~afV~f~~~~~A~~A~~~l~g~~~~g~~-----i~v~~a~ 221 (425)
...++|||+|| |..+++++|+++|.+||.|..|.|.. |||||+|.+.++|.+||+.||+..|+|+. |.|..+.
T Consensus 14 r~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 14 RSENRVVVSGL-PPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp ---CCEEEEEC-CSSCCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence 45689999999 89999999999999999999999987 99999999999999999999999999998 5555544
Q ss_pred e
Q 014384 222 R 222 (425)
Q Consensus 222 ~ 222 (425)
.
T Consensus 93 ~ 93 (115)
T 3beg_B 93 P 93 (115)
T ss_dssp -
T ss_pred C
Confidence 3
No 88
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.69 E-value=7.6e-17 Score=131.79 Aligned_cols=78 Identities=19% Similarity=0.319 Sum_probs=71.7
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 121 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~ 121 (425)
.....++|||+|||+.+|+++|+++|.+||.|..|.|. +|||||+|.+.++|++||..|||..| +|+.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 98 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI--GMKRLK 98 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEE--CCEEEE
Confidence 33566899999999999999999999999999999883 58999999999999999999999999 899999
Q ss_pred EEEecccc
Q 014384 122 VEWTKHER 129 (425)
Q Consensus 122 V~~a~~~~ 129 (425)
|+|+....
T Consensus 99 V~~a~~~~ 106 (115)
T 2cpz_A 99 VQLKRSKN 106 (115)
T ss_dssp EECCCCSC
T ss_pred EEEcCCCC
Confidence 99998754
No 89
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.69 E-value=9.4e-17 Score=129.39 Aligned_cols=75 Identities=16% Similarity=0.380 Sum_probs=70.3
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 122 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~-------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V 122 (425)
.....++|||+|||+.+|+++|.++|.+||.|..|.|. +|||||+|.+.++|++|+..|||..| +|+.|.|
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V 102 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPL--DGRPMNI 102 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEE
Confidence 44667999999999999999999999999999999984 78999999999999999999999999 8999999
Q ss_pred EEec
Q 014384 123 EWTK 126 (425)
Q Consensus 123 ~~a~ 126 (425)
+|+.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9985
No 90
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=4.1e-17 Score=130.14 Aligned_cols=76 Identities=29% Similarity=0.463 Sum_probs=70.8
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEecc
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKH 127 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~ 127 (425)
.....++|||+|||..+|+++|.++|++||.|..|.| .+|||||+|.+.++|.+|+..|||..| +|+.|.|.|++.
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~a~~ 100 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPF--QGRNLRTGWGKE 100 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEE--TTEECCCCBCCC
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEEeccC
Confidence 3455789999999999999999999999999999999 489999999999999999999999999 899999999864
No 91
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6e-17 Score=131.16 Aligned_cols=77 Identities=25% Similarity=0.500 Sum_probs=71.8
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 123 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~ 123 (425)
.....++|||+|||..+|+++|+++|++||+|..|.|. +|||||+|.+.++|++|+..|||..| +|+.|.|+
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVV--EGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEEE
Confidence 44567999999999999999999999999999999994 79999999999999999999999999 89999999
Q ss_pred Eeccc
Q 014384 124 WTKHE 128 (425)
Q Consensus 124 ~a~~~ 128 (425)
++...
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 98764
No 92
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=7.7e-17 Score=129.68 Aligned_cols=77 Identities=18% Similarity=0.482 Sum_probs=71.2
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEE
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 122 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V 122 (425)
....++|||+|||..+|+++|.++|++||+|..|.|. +|||||+|.+.++|.+|+..|||..| +|+.|.|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V 97 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL--MGQPISV 97 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBS--SSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEE--CCcEEEE
Confidence 3556899999999999999999999999999999983 68999999999999999999999999 8999999
Q ss_pred EEecccc
Q 014384 123 EWTKHER 129 (425)
Q Consensus 123 ~~a~~~~ 129 (425)
.|+....
T Consensus 98 ~~a~~~~ 104 (106)
T 1p27_B 98 DWCFVRG 104 (106)
T ss_dssp EESEESS
T ss_pred EeecCCC
Confidence 9998653
No 93
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.6e-16 Score=128.33 Aligned_cols=78 Identities=19% Similarity=0.308 Sum_probs=71.7
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 122 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~-------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V 122 (425)
.....++|||+|||+.+|+++|+++|.+||.|..|.|. +|||||+|.+.++|++|+..|||..| +|+.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 88 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLL--FDRPMHV 88 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe--CCCEEEE
Confidence 34567899999999999999999999999999999983 68999999999999999999999999 8999999
Q ss_pred EEecccc
Q 014384 123 EWTKHER 129 (425)
Q Consensus 123 ~~a~~~~ 129 (425)
.|+....
T Consensus 89 ~~a~~~~ 95 (114)
T 2do0_A 89 KMDERAL 95 (114)
T ss_dssp EECSCCC
T ss_pred EEcccCC
Confidence 9987644
No 94
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.5e-16 Score=129.02 Aligned_cols=78 Identities=18% Similarity=0.385 Sum_probs=72.3
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcC------CCeecC
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLD------RTEFGR 115 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~ln------g~~ig~ 115 (425)
.....++|||+|||+.+|+++|.++|.+||+|..|.|. +|||||+|.+.++|.+||..|| |..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~-- 88 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL-- 88 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES--
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE--
Confidence 44668999999999999999999999999999999983 7899999999999999999999 9999
Q ss_pred CCcEEEEEEecccc
Q 014384 116 KGRRLRVEWTKHER 129 (425)
Q Consensus 116 ~gr~l~V~~a~~~~ 129 (425)
+|+.|.|.|+....
T Consensus 89 ~g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 89 DGRQLKVDLAVTRD 102 (111)
T ss_dssp SSCEEEEECCCCCC
T ss_pred cCEEEEEEECCCCc
Confidence 89999999998754
No 95
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.68 E-value=8.9e-17 Score=125.80 Aligned_cols=77 Identities=23% Similarity=0.352 Sum_probs=71.6
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEE
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 124 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~ 124 (425)
....++|||+|||..+|+++|+++|.+||+|..|.|. +|||||+|.+.++|++|+..|||..| +|+.|.|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~--~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKL--SGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCB--TTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEEEE
Confidence 3567899999999999999999999999999999984 69999999999999999999999999 899999999
Q ss_pred ecccc
Q 014384 125 TKHER 129 (425)
Q Consensus 125 a~~~~ 129 (425)
+....
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 98754
No 96
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.68 E-value=1.3e-16 Score=129.37 Aligned_cols=78 Identities=18% Similarity=0.431 Sum_probs=71.8
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 121 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~ 121 (425)
.....++|||+|||..+|+++|.++|++||.|..|.|. +|||||+|.+.++|.+|+..|||..| +|+.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~ 99 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI--MGQTIQ 99 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE--CCcEEE
Confidence 34567899999999999999999999999999999983 69999999999999999999999999 899999
Q ss_pred EEEecccc
Q 014384 122 VEWTKHER 129 (425)
Q Consensus 122 V~~a~~~~ 129 (425)
|.|+....
T Consensus 100 V~~a~~~~ 107 (110)
T 1oo0_B 100 VDWCFVKG 107 (110)
T ss_dssp EEESEESS
T ss_pred EEEcccCC
Confidence 99998654
No 97
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.8e-16 Score=128.60 Aligned_cols=77 Identities=22% Similarity=0.465 Sum_probs=70.8
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 121 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~ 121 (425)
.....++|||+|||+.+|+++|.++|.+||+|..|.|. +|||||+|.+.++|++||..||+ .| +|+.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~--~g~~l~ 89 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-II--DGRKAN 89 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cC--CCEEEE
Confidence 45678999999999999999999999999999999993 68999999999999999999998 78 899999
Q ss_pred EEEecccc
Q 014384 122 VEWTKHER 129 (425)
Q Consensus 122 V~~a~~~~ 129 (425)
|+|+....
T Consensus 90 V~~a~~~~ 97 (116)
T 2cqd_A 90 VNLAYLGA 97 (116)
T ss_dssp EEESTTTC
T ss_pred EEEcccCC
Confidence 99997654
No 98
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.68 E-value=3.7e-17 Score=130.23 Aligned_cols=75 Identities=21% Similarity=0.274 Sum_probs=69.7
Q ss_pred CCCceEEEcCCCC------CCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCC
Q 014384 52 AMMRPIFCGNFEY------DARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKG 117 (425)
Q Consensus 52 ~~~~~l~V~nL~~------~~t~~~L~~lF~~~G~V~~v~i--------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~g 117 (425)
...++|||+|||. .+++++|.++|++||.|..|.| ++|||||+|.+.++|.+|+..|||..| .|
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~--~g 81 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRL--DL 81 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBS--SS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCccc--CC
Confidence 3468999999999 9999999999999999999998 379999999999999999999999999 78
Q ss_pred -cEEEEEEeccc
Q 014384 118 -RRLRVEWTKHE 128 (425)
Q Consensus 118 -r~l~V~~a~~~ 128 (425)
+.|.|.++.+.
T Consensus 82 ~r~l~V~~a~~~ 93 (100)
T 3ns6_A 82 KHRLFLYTMKDV 93 (100)
T ss_dssp SCBCEEEESHHH
T ss_pred CeEEEEEECchh
Confidence 99999998754
No 99
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.68 E-value=1.4e-16 Score=125.98 Aligned_cols=78 Identities=19% Similarity=0.452 Sum_probs=71.5
Q ss_pred hcCCCceEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEe-----CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLE----RLFRRYGKVDRVDMK-----SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRL 120 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~----~lF~~~G~V~~v~i~-----kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l 120 (425)
...+.++|||+|||..+|+++|. ++|++||.|..|.|. +|||||+|.+.++|.+|+..|||..| .|+.|
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l 81 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPF--YDKPM 81 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEE--TTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEE--CCcEE
Confidence 45678999999999999999999 999999999999984 79999999999999999999999999 89999
Q ss_pred EEEEecccc
Q 014384 121 RVEWTKHER 129 (425)
Q Consensus 121 ~V~~a~~~~ 129 (425)
.|.|+....
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999998654
No 100
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.7e-16 Score=127.88 Aligned_cols=78 Identities=29% Similarity=0.578 Sum_probs=72.3
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe---------CCEEEEEEcCHHHHHHHHHhc-CCCeecCCCcE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK---------SGFAFIYMDDERDAEDAIRGL-DRTEFGRKGRR 119 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~---------kg~aFV~F~~~~~A~~A~~~l-ng~~ig~~gr~ 119 (425)
.....++|||+|||+.+|+++|.++|.+||.|..|.|. +|||||+|.+.++|.+||..| ||..| .|+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~--~g~~ 88 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL--YGRR 88 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS--SSCB
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeE--CCCE
Confidence 45667999999999999999999999999999999982 689999999999999999999 99999 8999
Q ss_pred EEEEEecccc
Q 014384 120 LRVEWTKHER 129 (425)
Q Consensus 120 l~V~~a~~~~ 129 (425)
|.|.|+....
T Consensus 89 l~v~~a~~~~ 98 (107)
T 2cph_A 89 LVLEWADSEV 98 (107)
T ss_dssp CEEEECCCCC
T ss_pred EEEEeCCCCC
Confidence 9999998765
No 101
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=9.7e-17 Score=133.24 Aligned_cols=77 Identities=16% Similarity=0.303 Sum_probs=70.1
Q ss_pred cCCCceEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEe-----CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEE
Q 014384 51 EAMMRPIFCGNFEYDARQSDLE----RLFRRYGKVDRVDMK-----SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 121 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~----~lF~~~G~V~~v~i~-----kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~ 121 (425)
..+.++|||+||++.+++++|+ ++|++||.|..|.+. +|||||+|.+.++|..|+..|||..| .|+.|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l--~gr~l~ 103 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPF--QGNPLV 103 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCC--TTSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEe--CCCEEE
Confidence 3557899999999999999876 799999999999883 79999999999999999999999999 899999
Q ss_pred EEEecccc
Q 014384 122 VEWTKHER 129 (425)
Q Consensus 122 V~~a~~~~ 129 (425)
|.|+....
T Consensus 104 V~~a~~~~ 111 (127)
T 2a3j_A 104 ITFSETPQ 111 (127)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99998654
No 102
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.2e-17 Score=129.16 Aligned_cols=74 Identities=19% Similarity=0.349 Sum_probs=68.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEE
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 124 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~-------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~ 124 (425)
...++|||+|||+++|+++|.++|++||+|..|.|. +|||||+|.+.++|.+||. +||..| +|+.|.|.|
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~--~gr~l~V~~ 85 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKY--KETDLLILF 85 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCC--TTTTCEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEE--CCEEEEEEE
Confidence 456899999999999999999999999999999994 7999999999999999996 999999 899999999
Q ss_pred eccc
Q 014384 125 TKHE 128 (425)
Q Consensus 125 a~~~ 128 (425)
+...
T Consensus 86 ~~~~ 89 (103)
T 1s79_A 86 KDDY 89 (103)
T ss_dssp HHHH
T ss_pred chHH
Confidence 8653
No 103
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.67 E-value=8.2e-17 Score=130.10 Aligned_cols=78 Identities=21% Similarity=0.475 Sum_probs=71.8
Q ss_pred hhcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEE
Q 014384 49 AFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRL 120 (425)
Q Consensus 49 ~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l 120 (425)
......++|||+|||..+|+++|.++|++||.|..|.|. +|||||+|.+.++|.+|+..|||..| +|+.|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i--~g~~l 98 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL--AGRPM 98 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCS--SSSCC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCEEE
Confidence 345667999999999999999999999999999999983 68999999999999999999999999 89999
Q ss_pred EEEEeccc
Q 014384 121 RVEWTKHE 128 (425)
Q Consensus 121 ~V~~a~~~ 128 (425)
.|.++...
T Consensus 99 ~V~~a~~k 106 (108)
T 2jrs_A 99 KVGHVTER 106 (108)
T ss_dssp EEECSCSS
T ss_pred EEEEcccC
Confidence 99998764
No 104
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=127.25 Aligned_cols=75 Identities=21% Similarity=0.380 Sum_probs=69.4
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEEe--------CCEEEEEEcCHHHHHHHHHhcCCCee
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDR--------VDMK--------SGFAFIYMDDERDAEDAIRGLDRTEF 113 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~--------v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~i 113 (425)
.+...++|||+|||.++|+++|.++|++||.|.. |.|. +|||||+|.+.++|.+|+..|||..|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 4567899999999999999999999999999998 8772 68999999999999999999999999
Q ss_pred cCCCcEEEEEEec
Q 014384 114 GRKGRRLRVEWTK 126 (425)
Q Consensus 114 g~~gr~l~V~~a~ 126 (425)
.|+.|.|++|+
T Consensus 89 --~g~~l~V~~A~ 99 (99)
T 2la6_A 89 --SGNPIKVSFAT 99 (99)
T ss_dssp --SSSBCEEEECC
T ss_pred --CCcEEEEEecC
Confidence 89999999974
No 105
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=7.7e-17 Score=127.59 Aligned_cols=77 Identities=29% Similarity=0.442 Sum_probs=69.4
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE----eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEe
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM----KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 125 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i----~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a 125 (425)
.....++|||+|||+.+|+++|+++|.+||.|. +.+ .+|||||+|.+.++|++|+..|||..| +|+.|.|.++
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~~a 91 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRL--GTDTLRVALA 91 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCS--SSSCCEEEEC
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEEEEc
Confidence 345678999999999999999999999999996 444 389999999999999999999999999 8999999999
Q ss_pred cccc
Q 014384 126 KHER 129 (425)
Q Consensus 126 ~~~~ 129 (425)
....
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 106
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.67 E-value=9.7e-17 Score=133.33 Aligned_cols=78 Identities=18% Similarity=0.462 Sum_probs=72.2
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 121 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~ 121 (425)
.....++|||+|||+.+|+++|.++|.+||.|..|.|. +|||||+|.+.++|++||..|||..| +|+.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 95 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL--MGQPIS 95 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBS--SSSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCee--CCeEEE
Confidence 34557899999999999999999999999999999983 79999999999999999999999999 899999
Q ss_pred EEEecccc
Q 014384 122 VEWTKHER 129 (425)
Q Consensus 122 V~~a~~~~ 129 (425)
|+|+....
T Consensus 96 v~~a~~~~ 103 (126)
T 3ex7_B 96 VDWCFVRG 103 (126)
T ss_dssp EEESEESS
T ss_pred EEEecCCC
Confidence 99998755
No 107
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=9.6e-17 Score=127.45 Aligned_cols=77 Identities=17% Similarity=0.388 Sum_probs=70.6
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCee-EEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcE--
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVD-RVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRR-- 119 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~-~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~-- 119 (425)
....++|||+|||+.+|+++|.++|++||.|. .|.|. +|||||+|.+.++|++|++.|||..| .|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~~~ 83 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPL--PGATPA 83 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEE--SSCSSC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCcc--CCCCcc
Confidence 45689999999999999999999999999999 99883 58999999999999999999999999 7998
Q ss_pred --EEEEEecccc
Q 014384 120 --LRVEWTKHER 129 (425)
Q Consensus 120 --l~V~~a~~~~ 129 (425)
|.|.|+....
T Consensus 84 ~~l~v~~a~~~~ 95 (99)
T 2div_A 84 KRFKLNYATYSG 95 (99)
T ss_dssp EECCEEETTCCS
T ss_pred eeEEEeecCCCC
Confidence 9999987643
No 108
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.67 E-value=2.8e-17 Score=128.27 Aligned_cols=73 Identities=18% Similarity=0.343 Sum_probs=63.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEE--------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEE
Q 014384 55 RPIFCGNFEYDARQSDLERLFRRYG--KVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 124 (425)
Q Consensus 55 ~~l~V~nL~~~~t~~~L~~lF~~~G--~V~~v~i--------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~ 124 (425)
.+|||+|||+.+|+++|.++|++|| .|..|.| ++|||||+|.+.++|++|++.|||..| +|+.|.|.+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~--~gr~i~V~~ 79 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL--HGQNPVVTP 79 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCS--SSCCCEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCee--CCEEEEEEE
Confidence 4799999999999999999999999 9999887 368999999999999999999999999 899999999
Q ss_pred ecccc
Q 014384 125 TKHER 129 (425)
Q Consensus 125 a~~~~ 129 (425)
+....
T Consensus 80 ~~~~~ 84 (90)
T 3p5t_L 80 SNKLE 84 (90)
T ss_dssp C----
T ss_pred CCCCc
Confidence 87654
No 109
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.67 E-value=2.3e-16 Score=136.17 Aligned_cols=78 Identities=23% Similarity=0.510 Sum_probs=72.3
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 121 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~ 121 (425)
.....++|||+|||+.+|+++|.++|++||+|..|.| ++|||||+|.+.++|++||..||+..| +|+.|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~ 112 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRL--DDRIIR 112 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEE--TTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEE
Confidence 4456799999999999999999999999999999999 368999999999999999999999999 899999
Q ss_pred EEEecccc
Q 014384 122 VEWTKHER 129 (425)
Q Consensus 122 V~~a~~~~ 129 (425)
|+|+....
T Consensus 113 V~~a~~~~ 120 (156)
T 1h2v_Z 113 TDWDAGFK 120 (156)
T ss_dssp EEEESCCC
T ss_pred EEECCCCC
Confidence 99998755
No 110
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.7e-16 Score=129.27 Aligned_cols=78 Identities=21% Similarity=0.383 Sum_probs=71.4
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCee--------EEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCee
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVD--------RVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEF 113 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~--------~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~i 113 (425)
.....++|||+|||+.+|+++|.++|.+||.|. .|.|. +|||||+|.+.++|++||..|||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 346779999999999999999999999999998 57772 78999999999999999999999999
Q ss_pred cCCCcEEEEEEecccc
Q 014384 114 GRKGRRLRVEWTKHER 129 (425)
Q Consensus 114 g~~gr~l~V~~a~~~~ 129 (425)
.|+.|.|.|+....
T Consensus 91 --~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 91 --QGSKLKVSLARKKP 104 (113)
T ss_dssp --TTEECEEECSSCCC
T ss_pred --CCCEEEEEECCCCC
Confidence 89999999998765
No 111
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.67 E-value=1.2e-16 Score=138.09 Aligned_cols=77 Identities=36% Similarity=0.653 Sum_probs=71.4
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEE
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 122 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V 122 (425)
....++|||+|||+.+|+++|.++|+.||.|..|.|. +|||||+|.+.++|.+||..|||..| .|+.|.|
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 144 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL--DGRELRV 144 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEES--SSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEE
Confidence 3457899999999999999999999999999999983 68999999999999999999999999 8999999
Q ss_pred EEecccc
Q 014384 123 EWTKHER 129 (425)
Q Consensus 123 ~~a~~~~ 129 (425)
.|+....
T Consensus 145 ~~a~~~~ 151 (158)
T 2kn4_A 145 QMARYGR 151 (158)
T ss_dssp EEECCSS
T ss_pred EECCCCC
Confidence 9998754
No 112
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.67 E-value=1.1e-16 Score=131.42 Aligned_cols=75 Identities=21% Similarity=0.327 Sum_probs=69.4
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 121 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~ 121 (425)
.....++|||+|||+++|+++|+++|++||+|..|.|. +|||||+|.+.++|++|+..|||..| +|+.|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 113 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQV--GTKRLK 113 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEE--TTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEE--CCEEEE
Confidence 44567999999999999999999999999999999983 78999999999999999999999999 899999
Q ss_pred EEEec
Q 014384 122 VEWTK 126 (425)
Q Consensus 122 V~~a~ 126 (425)
|+|++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99974
No 113
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.67 E-value=8e-17 Score=134.43 Aligned_cols=78 Identities=27% Similarity=0.490 Sum_probs=72.3
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 121 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~ 121 (425)
.+.+.++|||+|||+.+|+++|+++|++||+|..|.|. +|||||+|.+.++|++||..|||..| +|+.|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i--~g~~l~ 119 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL--DGRRIR 119 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCS--SSSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE--CCEEEE
Confidence 45677999999999999999999999999999999983 68999999999999999999999999 899999
Q ss_pred EEEecccc
Q 014384 122 VEWTKHER 129 (425)
Q Consensus 122 V~~a~~~~ 129 (425)
|+|+....
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99997654
No 114
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.66 E-value=2.1e-16 Score=122.81 Aligned_cols=72 Identities=33% Similarity=0.661 Sum_probs=67.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEe
Q 014384 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 125 (425)
Q Consensus 54 ~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a 125 (425)
.++|||+|||+.+|+++|.++|++||.|..|.|. +|||||+|.+.++|++|+ .|||..| +|+.|.|.++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~--~g~~l~V~~a 82 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLF--RGRQIKVIPK 82 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEE--TTEECEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEE--CCcEEEEEEc
Confidence 5799999999999999999999999999999883 789999999999999999 9999999 8999999998
Q ss_pred ccc
Q 014384 126 KHE 128 (425)
Q Consensus 126 ~~~ 128 (425)
...
T Consensus 83 ~~~ 85 (89)
T 3ucg_A 83 RTN 85 (89)
T ss_dssp TTT
T ss_pred cCC
Confidence 764
No 115
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.5e-16 Score=127.56 Aligned_cols=79 Identities=15% Similarity=0.287 Sum_probs=72.3
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhh-cCCeeEEEE-------eCCEEEEEEcCHHHHHHHHHhcCCCe-ecCCCcEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRR-YGKVDRVDM-------KSGFAFIYMDDERDAEDAIRGLDRTE-FGRKGRRL 120 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~-~G~V~~v~i-------~kg~aFV~F~~~~~A~~A~~~lng~~-ig~~gr~l 120 (425)
.....++|||+|||+.+|+++|.++|.+ ||.|..|.| ++|||||+|.+.++|.+|+..|||.. | +|+.|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--~g~~l 82 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGL--GSKPV 82 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSS--SSSCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCccc--CCEeE
Confidence 3456789999999999999999999999 999999998 37899999999999999999999999 8 89999
Q ss_pred EEEEeccccC
Q 014384 121 RVEWTKHERG 130 (425)
Q Consensus 121 ~V~~a~~~~~ 130 (425)
.|.++.....
T Consensus 83 ~v~~a~~~~~ 92 (104)
T 2dhg_A 83 RLSVAIPKAS 92 (104)
T ss_dssp CCCBCCCCCS
T ss_pred EEEEccCCCc
Confidence 9999976553
No 116
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.66 E-value=6.8e-16 Score=123.49 Aligned_cols=79 Identities=25% Similarity=0.470 Sum_probs=73.8
Q ss_pred CCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEeccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeCCC
Q 014384 146 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDD 225 (425)
Q Consensus 146 ~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~~ 225 (425)
...+.++|||+|| |..+++++|+++|.+||.|..|.++++||||+|.+.++|.+|++.||+..|.|+.|.|.++.....
T Consensus 7 ~~~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 7 GMAKVKVLFVRNL-ANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp CCCCCCCEEEECC-CTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcc
Confidence 3456789999999 788999999999999999999999999999999999999999999999999999999999987643
No 117
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.66 E-value=4.2e-16 Score=131.74 Aligned_cols=78 Identities=23% Similarity=0.483 Sum_probs=72.5
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 121 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~ 121 (425)
.....++|||+|||..+|+++|.++|+.||+|..|.|. +|||||+|.+.++|.+|+..|||..| .|+.|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 115 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNI--LNKRLK 115 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEEC--SSCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEE
Confidence 45667999999999999999999999999999999883 78999999999999999999999999 899999
Q ss_pred EEEecccc
Q 014384 122 VEWTKHER 129 (425)
Q Consensus 122 V~~a~~~~ 129 (425)
|.|+....
T Consensus 116 v~~a~~~~ 123 (139)
T 1u6f_A 116 VALAASGH 123 (139)
T ss_dssp EEESSCCC
T ss_pred EEECCCCC
Confidence 99998765
No 118
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.66 E-value=2.9e-16 Score=121.57 Aligned_cols=74 Identities=24% Similarity=0.502 Sum_probs=67.0
Q ss_pred hhcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEE
Q 014384 49 AFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRL 120 (425)
Q Consensus 49 ~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l 120 (425)
......++|||+|||+.+|+++|.++|++||.|..|.|. +|||||+|.+.++|.+|+ .+++..| +|+.|
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~~~~~~~--~g~~i 82 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL-DQKEHRL--DGRVI 82 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHH-HSSCEEE--TTEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHH-HhCCCEE--CCEEE
Confidence 345678999999999999999999999999999999983 789999999999999999 5688888 89999
Q ss_pred EEEEe
Q 014384 121 RVEWT 125 (425)
Q Consensus 121 ~V~~a 125 (425)
.|.+|
T Consensus 83 ~v~~A 87 (87)
T 3s7r_A 83 DPKKA 87 (87)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99985
No 119
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=3.1e-16 Score=125.52 Aligned_cols=76 Identities=20% Similarity=0.444 Sum_probs=69.8
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 121 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~ 121 (425)
.....++|||+|||+.+|+++|.++|.+|| |..|.|. +|||||+|.+.++|++|| .|||..| .|+.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~ 86 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALL--GDRSLR 86 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEE--TTEECE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeE--CCeEEE
Confidence 345679999999999999999999999997 9999883 689999999999999999 9999999 899999
Q ss_pred EEEecccc
Q 014384 122 VEWTKHER 129 (425)
Q Consensus 122 V~~a~~~~ 129 (425)
|.|+....
T Consensus 87 V~~a~~~~ 94 (103)
T 2dng_A 87 VDIAEGRK 94 (103)
T ss_dssp EEECCCCC
T ss_pred EEEecCCC
Confidence 99998754
No 120
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.66 E-value=2.2e-16 Score=126.88 Aligned_cols=77 Identities=17% Similarity=0.304 Sum_probs=70.4
Q ss_pred cCCCceEEEcCCCCCC------CHHHHHHHHhhcCCeeEEEEe------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCc
Q 014384 51 EAMMRPIFCGNFEYDA------RQSDLERLFRRYGKVDRVDMK------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGR 118 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~------t~~~L~~lF~~~G~V~~v~i~------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr 118 (425)
....++|||+|||+.+ |+++|.++|++||.|..|.|. +|||||+|.+.++|.+|+..|||..| +|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~--~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKL--DKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEEC--STT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCccc--CCC
Confidence 3456899999999999 889999999999999999984 79999999999999999999999999 898
Q ss_pred -EEEEEEecccc
Q 014384 119 -RLRVEWTKHER 129 (425)
Q Consensus 119 -~l~V~~a~~~~ 129 (425)
.|.|.++....
T Consensus 90 ~~l~V~~a~~~~ 101 (105)
T 2nlw_A 90 HTFRVNLFTDFD 101 (105)
T ss_dssp CEEEEECSCCCC
T ss_pred ceEEEEEcchHh
Confidence 99999987543
No 121
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3e-16 Score=125.83 Aligned_cols=75 Identities=21% Similarity=0.479 Sum_probs=69.7
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe---------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEE
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK---------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 121 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~---------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~ 121 (425)
....++|||+|||+.+|+++|.++|..|| |..|.|. +|||||+|.+.++|++|| .|||..| .|+.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~ 87 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL--GNKRIR 87 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEE--TTEECE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEe--CCcEEE
Confidence 35679999999999999999999999999 9999983 689999999999999999 9999999 899999
Q ss_pred EEEecccc
Q 014384 122 VEWTKHER 129 (425)
Q Consensus 122 V~~a~~~~ 129 (425)
|+++....
T Consensus 88 V~~a~~~~ 95 (104)
T 1wi8_A 88 VDVADQAQ 95 (104)
T ss_dssp EEECCCCC
T ss_pred EEEccCCC
Confidence 99998765
No 122
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=6.8e-16 Score=120.30 Aligned_cols=78 Identities=27% Similarity=0.433 Sum_probs=73.4
Q ss_pred CCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEeccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeCCC
Q 014384 147 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDD 225 (425)
Q Consensus 147 ~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~~ 225 (425)
..+.++|||+|| |..+++++|+++|.+||.|..|.+.++||||+|.+.++|.+|++.||+..|+|+.|.|+++..+..
T Consensus 5 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 5 SSGMVKLFIGNL-PREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp SSCCEEEEEESC-CSSCCHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCCCeEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 456789999999 889999999999999999999999999999999999999999999999999999999999987543
No 123
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.66 E-value=4.3e-16 Score=128.92 Aligned_cols=77 Identities=22% Similarity=0.344 Sum_probs=70.0
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe---CCE-EEEEEcCHHHHHHHHHhcCCCeecCCC--cEEEEEE
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK---SGF-AFIYMDDERDAEDAIRGLDRTEFGRKG--RRLRVEW 124 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~---kg~-aFV~F~~~~~A~~A~~~lng~~ig~~g--r~l~V~~ 124 (425)
+.....|||+||++.+|+++|.++|++||+|..|.|. +|| |||+|.+.++|++|++.|||..| .| +.|+|+|
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i--~g~~~~LrI~~ 102 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNI--YNACCTLRIDF 102 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEE--ETTEEEEEEEE
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCee--cCCCcEEEEEe
Confidence 4455678899999999999999999999999999883 677 99999999999999999999999 56 9999999
Q ss_pred ecccc
Q 014384 125 TKHER 129 (425)
Q Consensus 125 a~~~~ 129 (425)
++...
T Consensus 103 ak~~~ 107 (130)
T 3zzy_A 103 SKLTS 107 (130)
T ss_dssp CSCSS
T ss_pred cCCCc
Confidence 98765
No 124
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.66 E-value=1.8e-16 Score=144.02 Aligned_cols=117 Identities=15% Similarity=0.181 Sum_probs=87.1
Q ss_pred eeeEEEEeCCCCccccccc-CCcceeecccc-cccchhhhhhhcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE-
Q 014384 10 CHYLLIVYSHSVWPVQKKY-LPRRLYVLGFR-RSHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM- 86 (425)
Q Consensus 10 ~~y~~i~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i- 86 (425)
..||||.|.+...+..+.. .+..+.....+ ................+|||+|||+.+|+++|.++|.+||.|..|.|
T Consensus 57 ~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~ 136 (213)
T 4f02_A 57 LGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 136 (213)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE
T ss_pred cccccceeCCHHHHHHHHHHhhhhhcCCcccccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEee
Confidence 3599999988766554431 12211111110 00111111223345679999999999999999999999999999998
Q ss_pred -----eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEeccc
Q 014384 87 -----KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHE 128 (425)
Q Consensus 87 -----~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~ 128 (425)
++|||||+|.+.++|.+||..|||..| +|+.|.|.|+...
T Consensus 137 ~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~--~g~~i~V~~a~~~ 181 (213)
T 4f02_A 137 CDENGSKGYGFVHFETQEAAERAIEKMNGMLL--NDRKVFVGRFKSR 181 (213)
T ss_dssp EETTEEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEECCCH
T ss_pred ccCCCCceEEEEEeCCHHHHHHHHHHhCCCEE--CCEEEEEEEcCCC
Confidence 379999999999999999999999999 8999999999754
No 125
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=1.2e-16 Score=129.88 Aligned_cols=77 Identities=18% Similarity=0.303 Sum_probs=70.9
Q ss_pred cCCCceEEEcCCCCCCCHHHHH---HHHhhcCCeeEEEEe-----------CCEEEEEEcCHHHHHHHHHhcCCCeecCC
Q 014384 51 EAMMRPIFCGNFEYDARQSDLE---RLFRRYGKVDRVDMK-----------SGFAFIYMDDERDAEDAIRGLDRTEFGRK 116 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~---~lF~~~G~V~~v~i~-----------kg~aFV~F~~~~~A~~A~~~lng~~ig~~ 116 (425)
....++|||+|||+.+|+++|. ++|.+||+|..|.|. +|||||+|.+.++|++||..|||..| +
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~--~ 89 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV--D 89 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE--T
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE--C
Confidence 3456899999999999999999 999999999999984 27999999999999999999999999 8
Q ss_pred CcEEEEEEecccc
Q 014384 117 GRRLRVEWTKHER 129 (425)
Q Consensus 117 gr~l~V~~a~~~~ 129 (425)
|+.|.|.|+....
T Consensus 90 gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 GRTLKASLGTTKY 102 (111)
T ss_dssp TEEEEEESCCCCS
T ss_pred CEEEEEEeccccc
Confidence 9999999998754
No 126
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.8e-16 Score=126.95 Aligned_cols=76 Identities=33% Similarity=0.616 Sum_probs=70.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEE
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 123 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~ 123 (425)
...++|||+|||..+|+++|.++|++||.|..|.|. +|||||+|.+.++|.+|+..|||..| .|+.|.|.
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~ 83 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF--SGRALRVD 83 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSC--SSSCBEEE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCee--CCcEEEEE
Confidence 345899999999999999999999999999999883 78999999999999999999999999 89999999
Q ss_pred Eecccc
Q 014384 124 WTKHER 129 (425)
Q Consensus 124 ~a~~~~ 129 (425)
|+....
T Consensus 84 ~a~~~~ 89 (104)
T 1p1t_A 84 NAASEK 89 (104)
T ss_dssp ETTCTT
T ss_pred eCCCcc
Confidence 997654
No 127
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=6.8e-16 Score=122.09 Aligned_cols=76 Identities=17% Similarity=0.295 Sum_probs=70.0
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEecc
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKH 127 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~ 127 (425)
.....++|||+|| .+|+++|+++|.+||+|..|.|. +|||||+|.+.++|.+||..|||..| +|+.|.|.|+..
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~v~~a~~ 86 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQV--ESVQLKVNIARK 86 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEE--TTEEEEEECCSS
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEEECCC
Confidence 3456789999996 89999999999999999999985 89999999999999999999999999 899999999976
Q ss_pred cc
Q 014384 128 ER 129 (425)
Q Consensus 128 ~~ 129 (425)
..
T Consensus 87 ~~ 88 (97)
T 1x5p_A 87 QP 88 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 128
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.65 E-value=5.6e-17 Score=136.51 Aligned_cols=116 Identities=27% Similarity=0.374 Sum_probs=73.1
Q ss_pred CEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEeccccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHH
Q 014384 89 GFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDL 168 (425)
Q Consensus 89 g~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L 168 (425)
.++|++|.+...|..|+..++|... .|.. .+.+ ........+.++|||+|| |..+++++|
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~--~g~~-~~~~----------------~~~~~~~~~~~~l~V~nL-p~~~te~~L 64 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQ--MGRG-SMSY----------------GRPPPDVEGMTSLKVDNL-TYRTSPDTL 64 (135)
T ss_dssp ---------------------------------CCS----------------CCSCSSGGGCCCEEEECC-CSSCHHHHH
T ss_pred ccccccccCCCchhhhhhhccCCCC--CCCC-CCCc----------------CCCCCCCCCCCEEEEeCC-CCCCCHHHH
Confidence 3678888888888889988888765 2322 1111 112234456789999999 889999999
Q ss_pred HhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeCC
Q 014384 169 ERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDD 224 (425)
Q Consensus 169 ~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~ 224 (425)
+++|++||.|..|.|+ +|||||+|.+.++|.+|++.||+..|+|+.|.|.++....
T Consensus 65 ~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 65 RRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 128 (135)
T ss_dssp HHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCC
T ss_pred HHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 9999999999999985 4699999999999999999999999999999999998753
No 129
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.65 E-value=1e-16 Score=126.19 Aligned_cols=75 Identities=13% Similarity=0.219 Sum_probs=65.9
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEE
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 122 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V 122 (425)
....++|||+|||+.+|+++|+++|.+||.|..+.+ .+|||||+|.+.++|++|+..|||..| +|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~gr~l~v 89 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI--GSRKVKL 89 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeE--CCcEEEE
Confidence 345689999999999999999999999999876555 369999999999999999999999999 8999999
Q ss_pred EEecc
Q 014384 123 EWTKH 127 (425)
Q Consensus 123 ~~a~~ 127 (425)
+++..
T Consensus 90 ~~a~s 94 (95)
T 2ek1_A 90 SGPSS 94 (95)
T ss_dssp ECCC-
T ss_pred EeccC
Confidence 98753
No 130
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.65 E-value=2.7e-16 Score=135.58 Aligned_cols=75 Identities=16% Similarity=0.335 Sum_probs=68.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEE--------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEE
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRYG--KVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 121 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~G--~V~~v~i--------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~ 121 (425)
...++|||+|||+.+|+++|.++|+.|| .|..|.| ++|||||+|.+.++|.+||..|||..| +|+.|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~--~Gr~l~ 130 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVL--NGEKVD 130 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEE--TTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCeEeE
Confidence 3568999999999999999999999999 9999988 378999999999999999999999999 899999
Q ss_pred EEEeccc
Q 014384 122 VEWTKHE 128 (425)
Q Consensus 122 V~~a~~~ 128 (425)
|.++...
T Consensus 131 V~~a~~~ 137 (156)
T 3n9u_C 131 VRPATRQ 137 (156)
T ss_dssp EEECCHH
T ss_pred EEEcCCC
Confidence 9998653
No 131
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=1.4e-16 Score=126.30 Aligned_cols=76 Identities=13% Similarity=0.205 Sum_probs=68.3
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEE
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 122 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V 122 (425)
....++|||+|||+.+|+++|+++|.+||.|..+.+ ++|||||+|.+.++|++|+..|||..| .|+.|.|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~V 89 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI--GSRKVKL 89 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEE--TTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCee--CCeEEEE
Confidence 355689999999999999999999999999975544 379999999999999999999999999 8999999
Q ss_pred EEeccc
Q 014384 123 EWTKHE 128 (425)
Q Consensus 123 ~~a~~~ 128 (425)
+++...
T Consensus 90 ~~a~~~ 95 (98)
T 2cqp_A 90 VLGSGP 95 (98)
T ss_dssp EESSCS
T ss_pred EEcCCC
Confidence 998753
No 132
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.65 E-value=5.6e-16 Score=128.38 Aligned_cols=78 Identities=15% Similarity=0.346 Sum_probs=72.2
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE-------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM-------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 122 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i-------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V 122 (425)
.....++|||+|||..+|+++|+++|++||+|..|.| .+|||||+|.+.++|.+|+..|||..| +|+.|.|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V 108 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPL--DGRPMDI 108 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEES--SSCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEE--CCcEEEE
Confidence 3456789999999999999999999999999999999 369999999999999999999999999 8999999
Q ss_pred EEecccc
Q 014384 123 EWTKHER 129 (425)
Q Consensus 123 ~~a~~~~ 129 (425)
+|+....
T Consensus 109 ~~a~~~~ 115 (124)
T 2kt5_A 109 QLVASQI 115 (124)
T ss_dssp EEECCTT
T ss_pred EEeCCCC
Confidence 9998754
No 133
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.6e-16 Score=128.34 Aligned_cols=75 Identities=28% Similarity=0.443 Sum_probs=69.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEE
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 123 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~ 123 (425)
...++|||+|||..+|+++|.++|..||.|..|.|. +|||||+|.+.++|++|| .|||..| +|+.|.|.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~V~ 99 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRL--LGVPIIVQ 99 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEE--TTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEe--CCeEEEEE
Confidence 346899999999999999999999999999999993 689999999999999999 9999999 89999999
Q ss_pred Eecccc
Q 014384 124 WTKHER 129 (425)
Q Consensus 124 ~a~~~~ 129 (425)
|+....
T Consensus 100 ~a~~~~ 105 (114)
T 2cq4_A 100 ASQAEK 105 (114)
T ss_dssp EHHHHH
T ss_pred ecCCCc
Confidence 987654
No 134
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.65 E-value=3.6e-16 Score=125.72 Aligned_cols=80 Identities=21% Similarity=0.321 Sum_probs=71.4
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCee-cCCCcEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEF-GRKGRRL 120 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~i-g~~gr~l 120 (425)
.....++|||+|||..+|+++|+++|++||+|..|.|. +|||||+|.+.++|.+|+..|||..| ...|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 44667999999999999999999999999999999983 69999999999999999999999765 2247999
Q ss_pred EEEEecccc
Q 014384 121 RVEWTKHER 129 (425)
Q Consensus 121 ~V~~a~~~~ 129 (425)
.|.|+....
T Consensus 89 ~v~~a~~~~ 97 (106)
T 2dgp_A 89 QVKPADSES 97 (106)
T ss_dssp EEEECCCCS
T ss_pred EEEECCccc
Confidence 999998755
No 135
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.4e-16 Score=126.56 Aligned_cols=80 Identities=14% Similarity=0.251 Sum_probs=70.7
Q ss_pred hcCCCceEEE--cCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcCHHHHHHHHHhcCCCee-c--CCCcEEEE
Q 014384 50 FEAMMRPIFC--GNFEYDARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGLDRTEF-G--RKGRRLRV 122 (425)
Q Consensus 50 ~~~~~~~l~V--~nL~~~~t~~~L~~lF~~~G~V~~v~i~--kg~aFV~F~~~~~A~~A~~~lng~~i-g--~~gr~l~V 122 (425)
...++++||| +||++.+|+++|+++|++||+|..|.|. +|||||+|.+.++|++|++.|||..| . ..|++|.|
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v 100 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 100 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEE
Confidence 4456789999 7799999999999999999999999985 78999999999999999999999977 1 14889999
Q ss_pred EEecccc
Q 014384 123 EWTKHER 129 (425)
Q Consensus 123 ~~a~~~~ 129 (425)
.|+....
T Consensus 101 ~~a~~~p 107 (114)
T 2cq2_A 101 NFVEKVQ 107 (114)
T ss_dssp EEESCCC
T ss_pred EecccCc
Confidence 9987544
No 136
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.65 E-value=4.5e-16 Score=123.64 Aligned_cols=74 Identities=27% Similarity=0.445 Sum_probs=68.8
Q ss_pred CCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEE
Q 014384 148 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 219 (425)
Q Consensus 148 ~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 219 (425)
..+++|||+|| |..+++++|+++|++||.|..|.++ +|||||+|.+.++|.+|++.|||..|+|+.|.|.|
T Consensus 17 ~~gt~lfV~nL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 17 FQGTNLIVNYL-PQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34578999999 8999999999999999999999985 57999999999999999999999999999999999
Q ss_pred eee
Q 014384 220 AVR 222 (425)
Q Consensus 220 a~~ 222 (425)
|++
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 864
No 137
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=3.3e-16 Score=124.80 Aligned_cols=78 Identities=22% Similarity=0.431 Sum_probs=69.4
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE----eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEe
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM----KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 125 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i----~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a 125 (425)
.....++|||+|||+.+|+++|+++|.+||.|.-+.. .+|||||+|.+.++|++||..|||..| +|+.|.|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~~a 88 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREI--EGRAIRLELQ 88 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEE--TTEEEEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEe--CCeEEEEEEc
Confidence 4466899999999999999999999999998843332 489999999999999999999999999 8999999999
Q ss_pred cccc
Q 014384 126 KHER 129 (425)
Q Consensus 126 ~~~~ 129 (425)
....
T Consensus 89 ~~~~ 92 (101)
T 2fc9_A 89 GPRG 92 (101)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8754
No 138
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.65 E-value=1.8e-16 Score=129.56 Aligned_cols=73 Identities=22% Similarity=0.302 Sum_probs=64.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeC-CEEEEEEcCHHHHHHHHHhcCCCeecCCCcE-----EEEEEe
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-GFAFIYMDDERDAEDAIRGLDRTEFGRKGRR-----LRVEWT 125 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~k-g~aFV~F~~~~~A~~A~~~lng~~ig~~gr~-----l~V~~a 125 (425)
...++|||+|||+++|+++|+++|.+||+|..|.|.. |||||+|.+.++|++||+.|||..| +|+. |.|..+
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~gr~~~~~~i~v~~~ 91 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF--RSHEGETAYIRVKVD 91 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBC--CCTTSCCCBCEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEE--CCcEeeeEEEEeccC
Confidence 3568999999999999999999999999999999976 9999999999999999999999999 8988 555554
Q ss_pred c
Q 014384 126 K 126 (425)
Q Consensus 126 ~ 126 (425)
.
T Consensus 92 ~ 92 (115)
T 3beg_B 92 G 92 (115)
T ss_dssp C
T ss_pred C
Confidence 3
No 139
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=2.5e-16 Score=126.48 Aligned_cols=77 Identities=18% Similarity=0.364 Sum_probs=70.8
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 121 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~ 121 (425)
.....++|||+|||+.+|+++|+++|.+||+|..|.|. +|||||+|.+.++|.+||.. |+..| +|+.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~--~g~~l~ 88 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTL--DGRNID 88 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEE--TTEEEB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeE--CCEEEE
Confidence 45677999999999999999999999999999999983 58999999999999999987 99999 899999
Q ss_pred EEEecccc
Q 014384 122 VEWTKHER 129 (425)
Q Consensus 122 V~~a~~~~ 129 (425)
|.++....
T Consensus 89 V~~a~~~~ 96 (105)
T 2dh8_A 89 PKPCTPRG 96 (105)
T ss_dssp CCCSCCSS
T ss_pred EEEccCCC
Confidence 99998655
No 140
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=9.6e-16 Score=119.96 Aligned_cols=78 Identities=26% Similarity=0.433 Sum_probs=73.4
Q ss_pred CCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEeccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeCC
Q 014384 146 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDD 224 (425)
Q Consensus 146 ~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~ 224 (425)
...+.++|||+|| |..+++++|+++|++||.|..|.+.++||||+|.+.++|.+|++.||+..|.|+.|.|.++....
T Consensus 6 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 6 SGKASTKLHVGNI-SPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp CCCSSEEEEEESC-CSSCCHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 3566789999999 88999999999999999999999999999999999999999999999999999999999998754
No 141
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.64 E-value=5.8e-16 Score=132.95 Aligned_cols=79 Identities=20% Similarity=0.256 Sum_probs=70.0
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe----CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEec
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK----SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 126 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~----kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~ 126 (425)
+....+|||+||++.+|+++|+++|++||+|+.|.|. +|||||+|.+.++|++|+..|||..|...++.|+|+|++
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 3445679999999999999999999999999999983 579999999999999999999999993123999999998
Q ss_pred ccc
Q 014384 127 HER 129 (425)
Q Consensus 127 ~~~ 129 (425)
...
T Consensus 123 ~~~ 125 (164)
T 1sjr_A 123 LTS 125 (164)
T ss_dssp SSS
T ss_pred CCc
Confidence 764
No 142
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=5.3e-16 Score=127.76 Aligned_cols=75 Identities=20% Similarity=0.253 Sum_probs=67.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCE-EEEEEcCHHHHHHHHHhcCCCeecCCC--cEEEEEEecc
Q 014384 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SGF-AFIYMDDERDAEDAIRGLDRTEFGRKG--RRLRVEWTKH 127 (425)
Q Consensus 53 ~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--kg~-aFV~F~~~~~A~~A~~~lng~~ig~~g--r~l~V~~a~~ 127 (425)
....|||+||++.+|+++|.++|++||.|..|.|. .|| |||+|.+.++|.+|++.|||..| .| +.|.|+||+.
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i--~g~~~~l~V~~Ak~ 101 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADI--YAGCCTLKIEYARP 101 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCC--BTTBSEEEEECCSC
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEe--cCCCeEEEEEEecC
Confidence 34557899999999999999999999999999884 586 99999999999999999999999 55 6999999987
Q ss_pred cc
Q 014384 128 ER 129 (425)
Q Consensus 128 ~~ 129 (425)
..
T Consensus 102 ~~ 103 (124)
T 2e5i_A 102 TR 103 (124)
T ss_dssp SC
T ss_pred Cc
Confidence 64
No 143
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=9.1e-16 Score=124.00 Aligned_cols=76 Identities=24% Similarity=0.354 Sum_probs=69.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEe---------CCEEEEEEcCHHHHHHHHHhcC--CCeecCCCcE
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRYGK-VDRVDMK---------SGFAFIYMDDERDAEDAIRGLD--RTEFGRKGRR 119 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~G~-V~~v~i~---------kg~aFV~F~~~~~A~~A~~~ln--g~~ig~~gr~ 119 (425)
...++|||+|||+.+|+++|.++|.+||. |..|.|. +|||||+|.+.++|.+|+..|| +..| +|+.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~--~g~~ 83 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQL--WGHQ 83 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCB--TTBC
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCcee--cCCe
Confidence 45789999999999999999999999998 9999884 7899999999999999999996 5888 8999
Q ss_pred EEEEEecccc
Q 014384 120 LRVEWTKHER 129 (425)
Q Consensus 120 l~V~~a~~~~ 129 (425)
|.|.|+....
T Consensus 84 l~V~~a~~~~ 93 (109)
T 2dis_A 84 IAVDWAEPEI 93 (109)
T ss_dssp CEEEESCSSC
T ss_pred EEEEEcCCCC
Confidence 9999998765
No 144
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.9e-15 Score=120.01 Aligned_cols=80 Identities=30% Similarity=0.405 Sum_probs=74.3
Q ss_pred CCCCCCCcEEEEEcCCCCCCCHHHHHhhhccC--CcEEEEEEeccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEee
Q 014384 144 STNTRPSKTLFVINFDPYHTRTRDLERHFEPY--GKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221 (425)
Q Consensus 144 ~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~--G~v~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 221 (425)
.....+.++|||+|| |..+++++|+++|.+| |.|..|.+++|||||+|.+.++|.+|+..||+..|+|+.|.|.++.
T Consensus 9 ~~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 9 EDTMSSVKILYVRNL-MLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp CSCSSCCCEEEEESC-CTTCCHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred ccccCCcCEEEEeCC-CCCCCHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 344567899999999 8889999999999999 9999999999999999999999999999999999999999999998
Q ss_pred eCC
Q 014384 222 RDD 224 (425)
Q Consensus 222 ~~~ 224 (425)
...
T Consensus 88 ~~~ 90 (99)
T 2cpd_A 88 PVD 90 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 145
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.64 E-value=6.5e-16 Score=125.02 Aligned_cols=78 Identities=18% Similarity=0.378 Sum_probs=66.5
Q ss_pred hhcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEE
Q 014384 49 AFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRL 120 (425)
Q Consensus 49 ~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l 120 (425)
......++|||+|||..+|+++|.++|+.||+|..|.|. +|||||+|.+.++|.+|+..+ +..| +|+.|
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l--~g~~l 96 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHEL--DSKTI 96 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEE--TTEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcC--CCEEE
Confidence 455677999999999999999999999999999999983 689999999999999999776 5888 89999
Q ss_pred EEEEecccc
Q 014384 121 RVEWTKHER 129 (425)
Q Consensus 121 ~V~~a~~~~ 129 (425)
.|.++....
T Consensus 97 ~V~~a~~~~ 105 (109)
T 2rs2_A 97 DPKVAFPRR 105 (109)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCCC
Confidence 999998654
No 146
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.64 E-value=1.9e-16 Score=118.90 Aligned_cols=67 Identities=22% Similarity=0.475 Sum_probs=62.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEe
Q 014384 56 PIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 125 (425)
Q Consensus 56 ~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a 125 (425)
+|||+|||+.+|+++|.++|++||+|..|.|. +|||||+|.+.++|++|++ |||..| +|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~--~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEI--NNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCS--SSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEE--CCEEEEEEeC
Confidence 59999999999999999999999999999983 6899999999999999995 999999 8999999875
No 147
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.64 E-value=4.9e-16 Score=128.68 Aligned_cols=76 Identities=28% Similarity=0.598 Sum_probs=70.0
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEE
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 122 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V 122 (425)
....++|||+|||..+|+++|.++|++||.|..|.|. +|||||+|.+.++|.+|+ .|||..| +|+.|.|
T Consensus 33 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~V 109 (124)
T 2jwn_A 33 EIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVF--RGRTIKV 109 (124)
T ss_dssp HHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEE--TTEECEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeE--CCeEEEE
Confidence 3456899999999999999999999999999999983 789999999999999999 8999999 8999999
Q ss_pred EEecccc
Q 014384 123 EWTKHER 129 (425)
Q Consensus 123 ~~a~~~~ 129 (425)
.|+....
T Consensus 110 ~~a~~~~ 116 (124)
T 2jwn_A 110 LPKRTNM 116 (124)
T ss_dssp EESSCCC
T ss_pred EECCCCC
Confidence 9998644
No 148
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.64 E-value=4.1e-16 Score=136.21 Aligned_cols=114 Identities=13% Similarity=0.189 Sum_probs=86.5
Q ss_pred eeeEEEEeCCCCcccccccCCcceeecccccccchhhhhhhcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--
Q 014384 10 CHYLLIVYSHSVWPVQKKYLPRRLYVLGFRRSHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-- 87 (425)
Q Consensus 10 ~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~-- 87 (425)
..||||.|.+...+..+...+...... .................++|||+|||..+|+++|.++|++||.|..|.|.
T Consensus 51 ~g~afV~f~~~~~A~~A~~~~~~~~~g-~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~ 129 (172)
T 2g4b_A 51 KNFAFLEFRSVDETTQAMAFDGIIFQG-QSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKD 129 (172)
T ss_dssp TTEEEEEESSHHHHHHHGGGTTCEETT-EECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEEC
T ss_pred CCEEEEEeCCHHHHHHHHHhCCcEecC-ceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEec
Confidence 359999999877665555333222211 11111011111223447899999999999999999999999999999982
Q ss_pred ------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEec
Q 014384 88 ------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 126 (425)
Q Consensus 88 ------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~ 126 (425)
+|||||+|.+.++|.+|+..|||..| +|+.|.|.||.
T Consensus 130 ~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~V~~As 172 (172)
T 2g4b_A 130 SATGLSKGYAFCEYVDINVTDQAIAGLNGMQL--GDKKLLVQRAS 172 (172)
T ss_dssp TTTCSEEEEEEEEESSTTHHHHHHHHHTTCEE--TTEECEEEECC
T ss_pred CCCCCcceEEEEEeCCHHHHHHHHHHcCCCEE--CCeEEEEEeCC
Confidence 68999999999999999999999999 89999999973
No 149
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.64 E-value=4e-16 Score=121.12 Aligned_cols=75 Identities=19% Similarity=0.339 Sum_probs=69.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEecccc
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 129 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~~ 129 (425)
...++|||+|||+.+|+++|+++|.+| .|..|.| .+|||||+|.+.++|++|+..|||..| +|+.|.|+|+....
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSF--RGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEE--TTEEEEEEECCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeE--CCcEEEEEEcCCCc
Confidence 356899999999999999999999999 9999888 489999999999999999999999999 89999999987644
No 150
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.64 E-value=9.2e-16 Score=121.03 Aligned_cols=78 Identities=18% Similarity=0.230 Sum_probs=71.5
Q ss_pred CCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--ccEEEEEEcCHHHHHHHHHHcCCCc--cCCeEEEEEEe
Q 014384 145 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDATNMSK--LTDRVISVEYA 220 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~--~~g~~i~v~~a 220 (425)
...+|+.+|||+|| |..+++++|.++|++||.|..|.+. +|||||+|.+.++|..|++.|++.. |.|+.|.|+|+
T Consensus 16 ~~~~ps~~l~V~NL-p~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 16 HKTPASPVVHIRGL-IDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp -CCCCCSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred ccCCCCcEEEEeCC-CCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 34678899999999 8999999999999999999999996 7899999999999999999999876 78999999999
Q ss_pred eeC
Q 014384 221 VRD 223 (425)
Q Consensus 221 ~~~ 223 (425)
+.+
T Consensus 95 ~~k 97 (100)
T 3r27_A 95 TSQ 97 (100)
T ss_dssp SCS
T ss_pred ccc
Confidence 764
No 151
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1e-15 Score=119.24 Aligned_cols=77 Identities=25% Similarity=0.428 Sum_probs=72.8
Q ss_pred CCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEeccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeCC
Q 014384 147 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDD 224 (425)
Q Consensus 147 ~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~ 224 (425)
..+.++|||+|| |..+++++|+++|.+||.|..|.+.++||||+|.+.++|.+|++.|||..|+|+.|.|.++....
T Consensus 6 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 6 SGNTWKIFVGNV-SAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp SCCSCCEEEESC-CTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 456789999999 88999999999999999999999999999999999999999999999999999999999998753
No 152
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.63 E-value=2.6e-16 Score=120.19 Aligned_cols=66 Identities=20% Similarity=0.369 Sum_probs=61.9
Q ss_pred ceEEEcCCCCCC------CHHHHHHHHhhcCCeeEEEEe------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCc-EEE
Q 014384 55 RPIFCGNFEYDA------RQSDLERLFRRYGKVDRVDMK------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGR-RLR 121 (425)
Q Consensus 55 ~~l~V~nL~~~~------t~~~L~~lF~~~G~V~~v~i~------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr-~l~ 121 (425)
++|||+|||..+ |+++|.++|++||+|..|.|. +|||||+|.+.++|.+|+..|||..| +|+ .|.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~--~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKL--DKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCC--SSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCccc--CCceeEE
Confidence 689999999999 789999999999999999984 79999999999999999999999999 788 877
Q ss_pred E
Q 014384 122 V 122 (425)
Q Consensus 122 V 122 (425)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 153
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=7.5e-17 Score=124.31 Aligned_cols=73 Identities=16% Similarity=0.322 Sum_probs=67.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEE
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 123 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~ 123 (425)
.+.++|||+|||+.+|+++|.++|++||.|..|.|. +|||||+|.+.++|.+|+..|||..| +|+.|+|.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~~~~~ 80 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGV--QAQMAKQS 80 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTC--CEESCCSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeE--eeEEEeec
Confidence 567899999999999999999999999999999983 78999999999999999999999999 79988877
Q ss_pred Eec
Q 014384 124 WTK 126 (425)
Q Consensus 124 ~a~ 126 (425)
++.
T Consensus 81 ~~~ 83 (85)
T 1x4e_A 81 GPS 83 (85)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 154
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.5e-15 Score=120.85 Aligned_cols=77 Identities=21% Similarity=0.309 Sum_probs=70.1
Q ss_pred CCCCcEEEEEcCCCC-CCCHHHHHhhhccCCcEEEEEEe--ccEEEEEEcCHHHHHHHHHHcCCC--ccCCeEEEEEEee
Q 014384 147 TRPSKTLFVINFDPY-HTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDATNMS--KLTDRVISVEYAV 221 (425)
Q Consensus 147 ~~~~~~l~V~nl~p~-~~~~~~L~~~f~~~G~v~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~i~v~~a~ 221 (425)
..+.++|||+|| |. .+++++|+++|++||.|..|.|+ ++||||+|.+.++|..|++.||+. .|.|+.|.|.++.
T Consensus 12 ~~p~~~l~V~nL-p~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 90 (102)
T 1x4d_A 12 VETRRVVHIMDF-QRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQ 90 (102)
T ss_dssp CCCCCEEEEESC-CCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEEC
T ss_pred CCCCCEEEEeCC-CCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECC
Confidence 457899999999 78 99999999999999999999997 489999999999999999999864 5999999999998
Q ss_pred eCC
Q 014384 222 RDD 224 (425)
Q Consensus 222 ~~~ 224 (425)
...
T Consensus 91 ~~~ 93 (102)
T 1x4d_A 91 KYK 93 (102)
T ss_dssp CCT
T ss_pred CCC
Confidence 653
No 155
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=3.8e-16 Score=120.16 Aligned_cols=73 Identities=22% Similarity=0.315 Sum_probs=65.7
Q ss_pred CCce-EEEcCCCCCCCHHH----HHHHHhhc-CCeeEEEEeCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEec
Q 014384 53 MMRP-IFCGNFEYDARQSD----LERLFRRY-GKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 126 (425)
Q Consensus 53 ~~~~-l~V~nL~~~~t~~~----L~~lF~~~-G~V~~v~i~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~ 126 (425)
++.| |||+|||..+++++ |.++|++| |+|.+|. .|+|||+|.+.++|..|++.|||..| .|++|+|.||+
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt--gG~AfV~F~~~esA~~A~~~l~G~~l--~gr~i~v~~A~ 82 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT--GCSAILRFINQDSAERAQKRMENEDV--FGNRIIVSFTP 82 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC--TTCEEEEESSHHHHHHHHHHHTTCCS--SSSCCEEESSC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe--cCEEEEEECCHHHHHHHHHHhcCCcc--CCceEEEEecC
Confidence 3445 99999999999988 56899999 5999884 49999999999999999999999999 79999999998
Q ss_pred ccc
Q 014384 127 HER 129 (425)
Q Consensus 127 ~~~ 129 (425)
...
T Consensus 83 ~~s 85 (96)
T 2diu_A 83 KNR 85 (96)
T ss_dssp CSC
T ss_pred CCc
Confidence 765
No 156
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.4e-16 Score=126.63 Aligned_cols=77 Identities=22% Similarity=0.329 Sum_probs=69.7
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCe----eEEEEe----CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEE
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKV----DRVDMK----SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 122 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V----~~v~i~----kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V 122 (425)
..+.++|||+|||..+|+++|.++|.+||.| ..+.+. +|||||+|.+.++|.+|+..|||..| +|+.|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~v 99 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKL--YGKILVI 99 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBC--SSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEE
Confidence 3567899999999999999999999999998 555553 79999999999999999999999999 8999999
Q ss_pred EEecccc
Q 014384 123 EWTKHER 129 (425)
Q Consensus 123 ~~a~~~~ 129 (425)
.|+....
T Consensus 100 ~~a~~~~ 106 (115)
T 2cpx_A 100 EFGKNKK 106 (115)
T ss_dssp EECCCCS
T ss_pred EEccCCC
Confidence 9998755
No 157
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.63 E-value=6.8e-16 Score=134.49 Aligned_cols=77 Identities=18% Similarity=0.450 Sum_probs=70.6
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEE
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 122 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V 122 (425)
....++|||+|||+.+|+++|.++|.+||.|..|.|. +|||||+|.+.++|.+||..|||..| .|+.|.|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V 146 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI--MGQTIQV 146 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEE
Confidence 3456789999999999999999999999999999984 68999999999999999999999999 8999999
Q ss_pred EEecccc
Q 014384 123 EWTKHER 129 (425)
Q Consensus 123 ~~a~~~~ 129 (425)
.|+....
T Consensus 147 ~~a~~~~ 153 (165)
T 1rk8_A 147 DWCFVKG 153 (165)
T ss_dssp EESEECC
T ss_pred EEecCCC
Confidence 9998754
No 158
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.63 E-value=7e-16 Score=121.79 Aligned_cols=78 Identities=26% Similarity=0.538 Sum_probs=71.9
Q ss_pred CCCCCcEEEEEcCCCC-CCCHHHHHhhhccCCcEEEEEEeccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeCC
Q 014384 146 NTRPSKTLFVINFDPY-HTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDD 224 (425)
Q Consensus 146 ~~~~~~~l~V~nl~p~-~~~~~~L~~~f~~~G~v~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~ 224 (425)
...+.++|||+|| |. .+++++|+++|.+||.|..|.+++|||||+|.+.++|..|++.|||..+.|+.|.|+++....
T Consensus 6 ~~~~~~~l~V~nl-p~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 6 NIPPKSRLFIGNL-PLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp ---CCEEEEEESS-TTSCCCHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred cCCCCCEEEEeCC-CcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 3567889999999 77 899999999999999999999999999999999999999999999999999999999998754
No 159
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=9.6e-16 Score=125.38 Aligned_cols=75 Identities=16% Similarity=0.437 Sum_probs=69.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEE
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 123 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~ 123 (425)
...++|||+|||+.+|+++|.++|.+||+|..|.|. +|||||+|.+.++|.+||.. |+..| +|+.|.|.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~--~g~~l~V~ 101 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSI--DGRVVEPK 101 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEE--TTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEE--CCEEEEEE
Confidence 345899999999999999999999999999999983 68999999999999999976 99999 89999999
Q ss_pred Eecccc
Q 014384 124 WTKHER 129 (425)
Q Consensus 124 ~a~~~~ 129 (425)
++....
T Consensus 102 ~a~~~~ 107 (116)
T 1x4b_A 102 RAVARE 107 (116)
T ss_dssp CCSSCC
T ss_pred ECCCCc
Confidence 998765
No 160
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.63 E-value=1.2e-16 Score=124.56 Aligned_cols=73 Identities=38% Similarity=0.713 Sum_probs=65.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEe
Q 014384 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 125 (425)
Q Consensus 54 ~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a 125 (425)
+++|||+|||..+|+++|.++|++||+|..|.|. +|||||+|.+.+ |.+|+..|||..| +|+.|.|++|
T Consensus 1 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~--~g~~l~V~~a 77 (90)
T 2ki2_A 1 MRNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDF--MGRTIRVTEA 77 (90)
T ss_dssp CEEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCC--SSSSCSEEEC
T ss_pred CcEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEE--CCeEEEEEEc
Confidence 4789999999999999999999999999999983 789999999999 9999999999999 8999999999
Q ss_pred cccc
Q 014384 126 KHER 129 (425)
Q Consensus 126 ~~~~ 129 (425)
....
T Consensus 78 ~~~~ 81 (90)
T 2ki2_A 78 NPKK 81 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 8654
No 161
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.63 E-value=5.2e-16 Score=122.41 Aligned_cols=78 Identities=21% Similarity=0.379 Sum_probs=70.2
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE---eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEec
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM---KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 126 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i---~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~ 126 (425)
.....++|||+|||..+|+++|.++|..||.|..|.. ++|||||+|.+.++|.+|+..|||..| +|+.|.|.|+.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~a~ 89 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI--DGRSVSLYYTG 89 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEE--TTEEEEEEECS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEEEEcC
Confidence 3456789999999999999999999999999987732 489999999999999999999999999 89999999997
Q ss_pred ccc
Q 014384 127 HER 129 (425)
Q Consensus 127 ~~~ 129 (425)
...
T Consensus 90 ~~~ 92 (96)
T 1fjc_A 90 EKG 92 (96)
T ss_dssp SSC
T ss_pred CCC
Confidence 654
No 162
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.63 E-value=5.7e-16 Score=134.19 Aligned_cols=114 Identities=17% Similarity=0.323 Sum_probs=85.8
Q ss_pred eeEEEEeCCCCcccccc-cCCcceeecc-cccccchhhhhhhcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-
Q 014384 11 HYLLIVYSHSVWPVQKK-YLPRRLYVLG-FRRSHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK- 87 (425)
Q Consensus 11 ~y~~i~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~- 87 (425)
.||||.|.+...+..+. .+........ ..................+|||+|||..+|+++|.++|+.||.|..|.+.
T Consensus 42 g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~ 121 (166)
T 3md3_A 42 NYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMW 121 (166)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEe
Confidence 59999998877655444 2222211110 00000011111344567899999999999999999999999999999883
Q ss_pred -------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEec
Q 014384 88 -------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 126 (425)
Q Consensus 88 -------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~ 126 (425)
+|||||+|.+.++|.+|+..|||..| .|+.|.|.||+
T Consensus 122 ~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~i~v~~a~ 165 (166)
T 3md3_A 122 DMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL--NGRPLRINWAA 165 (166)
T ss_dssp CTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE--TTEECEEEESC
T ss_pred cCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc--CCcEEEEEecC
Confidence 68999999999999999999999999 89999999985
No 163
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=119.33 Aligned_cols=76 Identities=13% Similarity=0.274 Sum_probs=69.4
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 122 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~-------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V 122 (425)
.....++|||+|||+++|+++|+++|..| .|..|.|. +|||||+|.+.++|.+||. |||..| .|+.|.|
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~--~gr~i~v 81 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYM--GGRYIEV 81 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEE--TTEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCcee--CCcEEEE
Confidence 34567899999999999999999999999 89999883 7899999999999999998 999999 8999999
Q ss_pred EEecccc
Q 014384 123 EWTKHER 129 (425)
Q Consensus 123 ~~a~~~~ 129 (425)
.++....
T Consensus 82 ~~a~~~~ 88 (91)
T 2dgw_A 82 FREKSGP 88 (91)
T ss_dssp EEESSCC
T ss_pred EECCcCC
Confidence 9997653
No 164
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.6e-15 Score=121.29 Aligned_cols=76 Identities=17% Similarity=0.350 Sum_probs=68.6
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 121 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~ 121 (425)
.....++|||+|||+.+|+++|+++|.+||+|..|.|. +|||||+|.+.++|++||. ++..| +|+.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~--~g~~l~ 86 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMI--DGRWCD 86 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEE--TTEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCee--CCeEEE
Confidence 44667899999999999999999999999999999883 5799999999999999997 46788 899999
Q ss_pred EEEecccc
Q 014384 122 VEWTKHER 129 (425)
Q Consensus 122 V~~a~~~~ 129 (425)
|.|+....
T Consensus 87 v~~a~~~~ 94 (103)
T 2cqg_A 87 CKLPNSKQ 94 (103)
T ss_dssp EECCCTTC
T ss_pred EEecCCCC
Confidence 99998765
No 165
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.63 E-value=6e-16 Score=125.38 Aligned_cols=76 Identities=22% Similarity=0.407 Sum_probs=71.4
Q ss_pred CCCCcEEEEEcCCCCC-CCHHHHHhhhccCCcEEEEEEeccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeC
Q 014384 147 TRPSKTLFVINFDPYH-TRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 223 (425)
Q Consensus 147 ~~~~~~l~V~nl~p~~-~~~~~L~~~f~~~G~v~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 223 (425)
..+.++|||+|| |.. +++++|+++|.+||.|..|.+.++||||+|.+.++|.+|++.||+..|+|+.|.|.++...
T Consensus 24 ~~~~~~l~V~nl-~~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 24 KSINSRVFIGNL-NTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp TTCSSEEEECSC-CCSSCCHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCCCcEEEEeCC-CcccCCHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 445689999999 787 8999999999999999999999999999999999999999999999999999999999764
No 166
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.63 E-value=6.4e-16 Score=132.44 Aligned_cols=77 Identities=36% Similarity=0.605 Sum_probs=71.8
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe---CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEec
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK---SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 126 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~---kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~ 126 (425)
.....++|||+|||+.+|+++|.++|++||.|..|.|. +|||||+|.+.++|..|+..|||..| .|+.|.|.|+.
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~a~ 146 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTL--CGCRVRVELSN 146 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCS--SSSCCEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEEEcC
Confidence 44567999999999999999999999999999999994 89999999999999999999999999 89999999987
Q ss_pred cc
Q 014384 127 HE 128 (425)
Q Consensus 127 ~~ 128 (425)
..
T Consensus 147 ~~ 148 (150)
T 2i2y_A 147 GE 148 (150)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 167
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.62 E-value=4.6e-16 Score=130.21 Aligned_cols=77 Identities=21% Similarity=0.348 Sum_probs=69.9
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeE--EEE--------eCCEEEEEEcCHHHHHHHHHhcCCC----eecC
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDR--VDM--------KSGFAFIYMDDERDAEDAIRGLDRT----EFGR 115 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~--v~i--------~kg~aFV~F~~~~~A~~A~~~lng~----~ig~ 115 (425)
.....++|||+|||+.+|+++|+++|.+||.|.. |.| ++|||||+|.+. +|.+|+..|||. .|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~-- 95 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI-- 95 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG--
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC--
Confidence 3456789999999999999999999999999966 777 379999999999 999999999999 88
Q ss_pred CCcEEEEEEecccc
Q 014384 116 KGRRLRVEWTKHER 129 (425)
Q Consensus 116 ~gr~l~V~~a~~~~ 129 (425)
+|+.|.|.|+....
T Consensus 96 ~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 96 DGKTINVEFAKGSK 109 (131)
T ss_dssp GGCCCCCEECCCSC
T ss_pred CCEEEEEEECCCCC
Confidence 89999999998754
No 168
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.62 E-value=9.8e-16 Score=129.47 Aligned_cols=74 Identities=24% Similarity=0.501 Sum_probs=68.5
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 121 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~ 121 (425)
.....++|||+|||..+|+++|+++|++||+|..|.| .+|||||+|.+.++|++|+..|||..| .|+.|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 136 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL--FGRTIR 136 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEE--TTEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEE--CCEEEE
Confidence 4456799999999999999999999999999999998 279999999999999999999999999 899999
Q ss_pred EEEe
Q 014384 122 VEWT 125 (425)
Q Consensus 122 V~~a 125 (425)
|.||
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9986
No 169
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=4.1e-15 Score=118.84 Aligned_cols=80 Identities=25% Similarity=0.443 Sum_probs=73.4
Q ss_pred CCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEE
Q 014384 145 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 218 (425)
....+.++|||+|| |..+++++|+++|.+||.|..|.|. ++||||+|.+.++|.+|++.||+..|.|+.|.|.
T Consensus 10 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 10 ITRYQVVNLYVKNL-DDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCCSSCCCEEEECC-CTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred cCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34557889999999 8899999999999999999999997 6799999999999999999999999999999999
Q ss_pred EeeeCCC
Q 014384 219 YAVRDDD 225 (425)
Q Consensus 219 ~a~~~~~ 225 (425)
++..+..
T Consensus 89 ~a~~~~~ 95 (103)
T 2d9p_A 89 LAQRKEE 95 (103)
T ss_dssp ECSSCCC
T ss_pred Eeccccc
Confidence 9988643
No 170
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=3.2e-16 Score=118.25 Aligned_cols=68 Identities=18% Similarity=0.424 Sum_probs=63.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEe
Q 014384 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 125 (425)
Q Consensus 55 ~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a 125 (425)
++|||+|||+.+|+++|.++|++||+|..|.|. +|||||+|.+.++|++|+..++ ..| +|+.|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~--~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HEL--DSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCC--SSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-Ccc--CCEEEEEEec
Confidence 589999999999999999999999999999883 6899999999999999999999 888 8999999987
No 171
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=121.73 Aligned_cols=78 Identities=21% Similarity=0.416 Sum_probs=68.9
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE-----eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM-----KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 124 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i-----~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~ 124 (425)
.....++|||+|||+.+|+++|+++|+.|+.|..+.. ++|||||+|.+.++|++||..|||..| +|+.|.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~V~~ 88 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI--DGNKVTLDW 88 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEEE
Confidence 4567899999999999999999999999976554443 268999999999999999999999999 899999999
Q ss_pred ecccc
Q 014384 125 TKHER 129 (425)
Q Consensus 125 a~~~~ 129 (425)
++...
T Consensus 89 a~~~~ 93 (102)
T 2fc8_A 89 AKPKG 93 (102)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 98765
No 172
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.62 E-value=3.2e-16 Score=124.75 Aligned_cols=76 Identities=22% Similarity=0.453 Sum_probs=66.4
Q ss_pred hhcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe---------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcE
Q 014384 49 AFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK---------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRR 119 (425)
Q Consensus 49 ~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~---------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~ 119 (425)
......++|||+|||.++|+++|.++|+.|| |..|.|. +|||||+|.+.++|.+|+ .|||..| +|+.
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~--~g~~ 89 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL--GNRR 89 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCB--TTBC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEE--CCeE
Confidence 3456679999999999999999999999999 9999982 689999999999999999 9999999 8999
Q ss_pred EEEEEeccc
Q 014384 120 LRVEWTKHE 128 (425)
Q Consensus 120 l~V~~a~~~ 128 (425)
|.|+++...
T Consensus 90 l~V~~a~~~ 98 (100)
T 2j76_E 90 IRVDVADQA 98 (100)
T ss_dssp CCCEECCCS
T ss_pred EEEEeccCC
Confidence 999998764
No 173
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5.8e-15 Score=117.44 Aligned_cols=79 Identities=19% Similarity=0.362 Sum_probs=71.4
Q ss_pred CCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--ccEEEEEEcCHHHHHHHHHHc--CCCccCCeEEEEEEe
Q 014384 145 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDAT--NMSKLTDRVISVEYA 220 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~i~v~~a 220 (425)
....+.++|||+|| |..+++++|+++|++||.|..|.+. +|||||+|.+.++|..|++.| ++..|.|+.|.|.|+
T Consensus 10 ~~~~p~~~l~V~nL-p~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 10 MDGAPSRVLHIRKL-PGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp CCSSCCSEEEEESC-CTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred ccCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 34567899999999 8899999999999999999999987 589999999999999999977 567899999999999
Q ss_pred eeCC
Q 014384 221 VRDD 224 (425)
Q Consensus 221 ~~~~ 224 (425)
..+.
T Consensus 89 ~~~~ 92 (101)
T 2cq1_A 89 NHKE 92 (101)
T ss_dssp SCSS
T ss_pred Cccc
Confidence 8754
No 174
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.62 E-value=2e-15 Score=119.41 Aligned_cols=78 Identities=23% Similarity=0.492 Sum_probs=72.1
Q ss_pred CCCCCCcEEEEEcCCCC-CCCHHHHHhhhccCCcEEEEEEeccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeC
Q 014384 145 TNTRPSKTLFVINFDPY-HTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 223 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~p~-~~~~~~L~~~f~~~G~v~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 223 (425)
....+.++|||+|| +. .+++++|+++|.+||.|..|.+.+|||||+|.+.++|.+|++.|||..|+|+.|.|+++...
T Consensus 17 ~~~~~~~~l~V~nL-p~~~~t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 17 RGSHMKSRLFIGNL-PLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp --CCTTCEEEEESC-CSSCCCHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred CCCCCCCEEEEeCC-CcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 44567899999999 77 89999999999999999999999999999999999999999999999999999999998764
No 175
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.62 E-value=1.5e-15 Score=118.17 Aligned_cols=77 Identities=22% Similarity=0.371 Sum_probs=62.1
Q ss_pred hhcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe---CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEe
Q 014384 49 AFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK---SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 125 (425)
Q Consensus 49 ~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~---kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a 125 (425)
.......+|||+|||+++|+++|+++|++||+|.+|.|. +|||||+|.+.++|++ |+|..+.+.|+.|.|.++
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEc
Confidence 355678999999999999999999999999999999994 8999999999999983 566665337999999998
Q ss_pred cccc
Q 014384 126 KHER 129 (425)
Q Consensus 126 ~~~~ 129 (425)
....
T Consensus 82 ~~k~ 85 (89)
T 3d2w_A 82 EPKH 85 (89)
T ss_dssp C---
T ss_pred CCCC
Confidence 7643
No 176
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5.3e-16 Score=126.59 Aligned_cols=77 Identities=18% Similarity=0.217 Sum_probs=69.4
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCe-eEEEE-------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKV-DRVDM-------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 121 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V-~~v~i-------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~ 121 (425)
.+...++|||+|||+++|+++|.++|..||.| ..|.| ++|||||+|.+.++|++||.. |+..| +|+.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~--~gr~i~ 87 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKL--NGREAF 87 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEE--TTEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCcc--CCeEEE
Confidence 34567899999999999999999999999999 77887 489999999999999999965 99999 899999
Q ss_pred EEEecccc
Q 014384 122 VEWTKHER 129 (425)
Q Consensus 122 V~~a~~~~ 129 (425)
|.++....
T Consensus 88 v~~a~~~~ 95 (114)
T 2cpy_A 88 VHVVTLED 95 (114)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99987654
No 177
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=7e-15 Score=117.51 Aligned_cols=80 Identities=34% Similarity=0.514 Sum_probs=73.9
Q ss_pred CCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEE
Q 014384 144 STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217 (425)
Q Consensus 144 ~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 217 (425)
.....+.++|||+|| |..+++++|+++|.+||.|..|.|. ++||||+|.+.++|.+|++.||+..|+|+.|.|
T Consensus 9 ~~~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 9 SESKSTPKRLHVSNI-PFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp SCCSCCCCEEEEESC-CTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345567799999999 8899999999999999999999997 689999999999999999999999999999999
Q ss_pred EEeeeCC
Q 014384 218 EYAVRDD 224 (425)
Q Consensus 218 ~~a~~~~ 224 (425)
.++..+.
T Consensus 88 ~~a~~~~ 94 (103)
T 2cq3_A 88 NNATARV 94 (103)
T ss_dssp EECCSSC
T ss_pred EEcccCC
Confidence 9998864
No 178
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.62 E-value=2e-15 Score=125.39 Aligned_cols=80 Identities=23% Similarity=0.434 Sum_probs=73.4
Q ss_pred CCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEE
Q 014384 145 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 216 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 216 (425)
....+.++|||+|| |..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|.+|++.|||..|+|+.|.
T Consensus 17 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 17 QRSVEGWILFVTGV-HEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp CCCSSSEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 44566789999999 8899999999999999999999995 67999999999999999999999999999999
Q ss_pred EEEeeeCCC
Q 014384 217 VEYAVRDDD 225 (425)
Q Consensus 217 v~~a~~~~~ 225 (425)
|.|+.....
T Consensus 96 v~~a~~~~~ 104 (126)
T 3ex7_B 96 VDWCFVRGP 104 (126)
T ss_dssp EEESEESSS
T ss_pred EEEecCCCC
Confidence 999988643
No 179
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.61 E-value=6.9e-16 Score=126.70 Aligned_cols=76 Identities=18% Similarity=0.212 Sum_probs=68.9
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEe-------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGK---VDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRR 119 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~---V~~v~i~-------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~ 119 (425)
.....++|||+|||+++|+++|.++|+.||. |..|.|. +|||||+|.+.++|++||. |||..| .|+.
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~--~gr~ 89 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESM--GHRY 89 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEE--TTEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeE--CCeE
Confidence 3456789999999999999999999999999 8888883 7899999999999999997 999999 8999
Q ss_pred EEEEEeccc
Q 014384 120 LRVEWTKHE 128 (425)
Q Consensus 120 l~V~~a~~~ 128 (425)
|.|.++...
T Consensus 90 i~V~~a~~~ 98 (118)
T 2db1_A 90 IEVFKSHRT 98 (118)
T ss_dssp EEEEEECHH
T ss_pred EEEEECCHH
Confidence 999998654
No 180
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.61 E-value=4.3e-16 Score=130.85 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=68.2
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEe-------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGK---VDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRR 119 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~---V~~v~i~-------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~ 119 (425)
.....++|||+|||+++|+++|.++|+.||. |..|.|. +|||||+|.+.++|++||. |||..| .|+.
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l--~gr~ 116 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESM--GHRY 116 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEES--SSSE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEE--CCEE
Confidence 4456789999999999999999999999999 7888873 7899999999999999997 999999 8999
Q ss_pred EEEEEecc
Q 014384 120 LRVEWTKH 127 (425)
Q Consensus 120 l~V~~a~~ 127 (425)
|.|.++..
T Consensus 117 i~V~~a~~ 124 (136)
T 2hgl_A 117 IEVFKSHR 124 (136)
T ss_dssp EEEEECCH
T ss_pred EEEEECCh
Confidence 99998754
No 181
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.61 E-value=1.6e-15 Score=115.60 Aligned_cols=74 Identities=22% Similarity=0.222 Sum_probs=68.8
Q ss_pred CCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeee
Q 014384 148 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 222 (425)
Q Consensus 148 ~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 222 (425)
.....|||+|| +..+++++|+++|.+||+|..+.+. +|||||+|.+.++|.+|++.||+..+.|++|.|.+|.+
T Consensus 5 ~~~~wL~VgNL-~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e 80 (89)
T 2wbr_A 5 WGSSWLLLKNL-TAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSE 80 (89)
T ss_dssp CCCCEEEEECC-CTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCH
T ss_pred CccceEEEeCC-CccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCH
Confidence 34678999999 7888899999999999999999985 89999999999999999999999999999999999853
No 182
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.3e-15 Score=120.20 Aligned_cols=75 Identities=17% Similarity=0.293 Sum_probs=68.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEE-EEe----CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEec
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRV-DMK----SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 126 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v-~i~----kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~ 126 (425)
...++|||+|||+.+|+++|.++|.+||.|..| .|. .+.|||+|.+.++|.+|+..|||..| +|+.|.|.++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~V~~a~ 90 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQL--ENFTLKVAYIP 90 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBC--SSCBCEEEECC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEEEEcC
Confidence 456899999999999999999999999999999 463 45699999999999999999999999 89999999998
Q ss_pred cc
Q 014384 127 HE 128 (425)
Q Consensus 127 ~~ 128 (425)
..
T Consensus 91 ~~ 92 (96)
T 2e44_A 91 DE 92 (96)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 183
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.61 E-value=3e-16 Score=125.07 Aligned_cols=76 Identities=16% Similarity=0.285 Sum_probs=67.4
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE-------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEE
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM-------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 123 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i-------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~ 123 (425)
....++|||+|||+.+|+++|+++|.+||.|..+.+ ++|||||+|.+.++|.+||+ |||..| .|+.|.|.
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~--~g~~l~V~ 90 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKV--FGNEIKLE 90 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCB--TTBCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEE--CCcEEEEE
Confidence 456789999999999999999999999998765222 38999999999999999997 999999 89999999
Q ss_pred Eecccc
Q 014384 124 WTKHER 129 (425)
Q Consensus 124 ~a~~~~ 129 (425)
++....
T Consensus 91 ~a~~~~ 96 (101)
T 1fj7_A 91 KPKGRD 96 (101)
T ss_dssp CCSCCC
T ss_pred EcCCCC
Confidence 997654
No 184
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4.9e-15 Score=119.72 Aligned_cols=80 Identities=26% Similarity=0.418 Sum_probs=73.1
Q ss_pred CCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe-----ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEE
Q 014384 144 STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-----RNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218 (425)
Q Consensus 144 ~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 218 (425)
.....+.++|||+|| |..+++++|+++|.+||.|..|.|. ++||||+|.+.++|.+|++.||+..|+|+.|.|.
T Consensus 16 ~~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNL-PPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCCCSSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 344566789999999 8899999999999999999999995 5799999999999999999999999999999999
Q ss_pred EeeeCC
Q 014384 219 YAVRDD 224 (425)
Q Consensus 219 ~a~~~~ 224 (425)
++....
T Consensus 95 ~a~~~~ 100 (109)
T 1x4a_A 95 FPRSGR 100 (109)
T ss_dssp CCCCCC
T ss_pred EcccCC
Confidence 998754
No 185
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.4e-15 Score=122.01 Aligned_cols=75 Identities=13% Similarity=0.227 Sum_probs=67.8
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEE-------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEE
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDR-VDM-------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 122 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~-v~i-------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V 122 (425)
.....+|||+|||+.+|+++|.++|..||.|.. |.| ++|||||+|.+.++|++||.. |+..| .|+.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~--~gr~i~v 88 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERI--GHRYIEI 88 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCS--SSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-Ccchh--CCcEEEE
Confidence 456789999999999999999999999999987 777 379999999999999999976 99999 7999999
Q ss_pred EEeccc
Q 014384 123 EWTKHE 128 (425)
Q Consensus 123 ~~a~~~ 128 (425)
.++...
T Consensus 89 ~~~~~~ 94 (104)
T 1wg5_A 89 FKSSRA 94 (104)
T ss_dssp EEECTT
T ss_pred EECCHH
Confidence 998654
No 186
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.9e-15 Score=118.77 Aligned_cols=75 Identities=27% Similarity=0.465 Sum_probs=67.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CC-EEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEeccc
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SG-FAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHE 128 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--kg-~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~ 128 (425)
...++|||+|||+.+|+++|.++|.+||.|..|.+. .+ ||||+|.+.++|.+|+. |||..| +|+.|.|.++...
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~--~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSL--GGHRLRVRPREQK 82 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEE--TTEECCCBCSCCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEE--CCEEEEEEECCcC
Confidence 456899999999999999999999999999998553 12 99999999999999998 999999 8999999988654
Q ss_pred c
Q 014384 129 R 129 (425)
Q Consensus 129 ~ 129 (425)
.
T Consensus 83 ~ 83 (94)
T 2e5g_A 83 E 83 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 187
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=5.8e-15 Score=116.08 Aligned_cols=77 Identities=27% Similarity=0.413 Sum_probs=71.3
Q ss_pred CCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEE
Q 014384 148 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 219 (425)
Q Consensus 148 ~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 219 (425)
.+.++|||+|| |..+++++|+++|++||.|..|.+. +|||||+|.+.++|.+|++.||+..|+|+.|.|.+
T Consensus 3 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 3 SGSSGLYVGSL-HFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp SCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 46789999999 7889999999999999999999995 46999999999999999999999999999999999
Q ss_pred eeeCCC
Q 014384 220 AVRDDD 225 (425)
Q Consensus 220 a~~~~~ 225 (425)
+..+..
T Consensus 82 a~~~~~ 87 (95)
T 2dnz_A 82 VTERLD 87 (95)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 988643
No 188
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.61 E-value=2.4e-15 Score=121.78 Aligned_cols=76 Identities=16% Similarity=0.267 Sum_probs=70.3
Q ss_pred CCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEE
Q 014384 147 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218 (425)
Q Consensus 147 ~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 218 (425)
..+..+|||+|| +..+++++|+++|++||.|..|.|+ +|||||+|.+.++|.+|++.|||..|+|+.|.|.
T Consensus 3 ~~p~~~lfV~nL-~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~ 81 (110)
T 3s8s_A 3 QIPLKEVTFARL-NDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQ 81 (110)
T ss_dssp CSCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEECC-CCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 356789999999 7899999999999999999999985 5799999999999999999999999999999999
Q ss_pred EeeeC
Q 014384 219 YAVRD 223 (425)
Q Consensus 219 ~a~~~ 223 (425)
++...
T Consensus 82 ~a~~~ 86 (110)
T 3s8s_A 82 LDIKG 86 (110)
T ss_dssp ECSTT
T ss_pred ECCCC
Confidence 98653
No 189
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=6.3e-15 Score=117.92 Aligned_cols=79 Identities=16% Similarity=0.204 Sum_probs=71.2
Q ss_pred CCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--ccEEEEEEcCHHHHHHHHHHcCCC--ccCCeEEEEEEe
Q 014384 145 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDATNMS--KLTDRVISVEYA 220 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~i~v~~a 220 (425)
....+.++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|.+|++.|++. .|+|+.|.|.|+
T Consensus 10 ~~~~p~~~l~V~nL-p~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 10 HKVSVSPVVHVRGL-CESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCCCCSEEEEESC-CSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CcCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 34567899999999 8899999999999999999999987 689999999999999999988654 599999999999
Q ss_pred eeCC
Q 014384 221 VRDD 224 (425)
Q Consensus 221 ~~~~ 224 (425)
..+.
T Consensus 89 ~~~~ 92 (104)
T 1wex_A 89 TSKR 92 (104)
T ss_dssp SSSS
T ss_pred cCcc
Confidence 8754
No 190
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.61 E-value=9.2e-16 Score=133.33 Aligned_cols=112 Identities=17% Similarity=0.257 Sum_probs=83.7
Q ss_pred eeEEEEeCCCCccccccc-CCcceeecccccccchhhhhhhcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--
Q 014384 11 HYLLIVYSHSVWPVQKKY-LPRRLYVLGFRRSHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-- 87 (425)
Q Consensus 11 ~y~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~-- 87 (425)
.||||.|.+...+..+.. ++.... ...................++|||+|||..+|+++|.++|++||.|..|.|.
T Consensus 46 g~afV~f~~~~~A~~a~~~l~~~~~-~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~ 124 (168)
T 1b7f_A 46 GYAFVDFTSEMDSQRAIKVLNGITV-RNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRD 124 (168)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTCEE-TTEECEEEECCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEEC
T ss_pred eEEEEEECCHHHHHHHHHhcCCCEe-CCcEEEEEecCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEc
Confidence 499999998776555442 222111 1111100001111234567899999999999999999999999999999883
Q ss_pred ------CCEEEEEEcCHHHHHHHHHhcCCCeecCCC--cEEEEEEe
Q 014384 88 ------SGFAFIYMDDERDAEDAIRGLDRTEFGRKG--RRLRVEWT 125 (425)
Q Consensus 88 ------kg~aFV~F~~~~~A~~A~~~lng~~ig~~g--r~l~V~~a 125 (425)
+|||||+|.+.++|.+|+..|||..| .| +.|.|.||
T Consensus 125 ~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~~~l~V~~A 168 (168)
T 1b7f_A 125 KLTGRPRGVAFVRYNKREEAQEAISALNNVIP--EGGSQPLSVRLA 168 (168)
T ss_dssp TTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC--TTCSSCCEEEEC
T ss_pred CCCCCcceEEEEEECCHHHHHHHHHHhcCCEe--cCCCeEEEEEeC
Confidence 58999999999999999999999999 56 99999986
No 191
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=5.5e-15 Score=116.80 Aligned_cols=80 Identities=26% Similarity=0.399 Sum_probs=73.1
Q ss_pred CCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--ccEEEEEEcCHHHHHHHHHHcCCCccC--CeEEEEEE
Q 014384 144 STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDATNMSKLT--DRVISVEY 219 (425)
Q Consensus 144 ~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~i~v~~ 219 (425)
.....+.++|||+|| |..+++++|+++|.+||.|..|.+. ++||||+|.+.++|.+|++.||+..|. |+.|.|.|
T Consensus 11 ~~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 11 YGKANPTTRLWVGGL-GPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCCCCCCSCEEEECC-CSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 344567789999999 8889999999999999999999997 569999999999999999999999999 99999999
Q ss_pred eeeCC
Q 014384 220 AVRDD 224 (425)
Q Consensus 220 a~~~~ 224 (425)
+..+.
T Consensus 90 a~~~~ 94 (97)
T 1why_A 90 AKSGP 94 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98753
No 192
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=8e-15 Score=117.17 Aligned_cols=79 Identities=28% Similarity=0.491 Sum_probs=72.6
Q ss_pred CCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEE
Q 014384 145 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 216 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 216 (425)
....+.++|||+|| |..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|.+|++.||+..|+|+.|.
T Consensus 10 ~~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 10 RRADDNATIRVTNL-SEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCCSSSEEEEEESC-CTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 34567899999999 8899999999999999999999995 46999999999999999999999999999999
Q ss_pred EEEeeeCC
Q 014384 217 VEYAVRDD 224 (425)
Q Consensus 217 v~~a~~~~ 224 (425)
|.++..+.
T Consensus 89 v~~a~~~~ 96 (103)
T 2cq0_A 89 VEWAKPST 96 (103)
T ss_dssp EEESSCCC
T ss_pred EEECCCCC
Confidence 99998754
No 193
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=7.9e-15 Score=117.18 Aligned_cols=80 Identities=23% Similarity=0.335 Sum_probs=73.3
Q ss_pred CCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEE
Q 014384 145 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 218 (425)
....+.++|||+|| |..+++++|+++|.+||.|..|.|. +|||||+|.+.++|.+|++.||+..|.|+.|.|.
T Consensus 10 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 10 EDDGQPRTLYVGNL-SRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CCSCCCCEEEEESC-CTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCC-CccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 34566799999999 8899999999999999999999996 4899999999999999999999999999999999
Q ss_pred EeeeCCC
Q 014384 219 YAVRDDD 225 (425)
Q Consensus 219 ~a~~~~~ 225 (425)
++.....
T Consensus 89 ~a~~~~~ 95 (103)
T 2cqi_A 89 WATTPSS 95 (103)
T ss_dssp ECCCTTC
T ss_pred ECCCCcc
Confidence 9988543
No 194
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.9e-15 Score=123.16 Aligned_cols=79 Identities=15% Similarity=0.281 Sum_probs=69.6
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-------CCEEEEEEcCHHHHHHHHHhcCCCeecC------C
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGR------K 116 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~-------kg~aFV~F~~~~~A~~A~~~lng~~ig~------~ 116 (425)
.....++|||+|||+.+|+++|.++|..||.|..|.|. +|||||+|.+.++|.+|+..|||..|.. .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 34567899999999999999999999999999999983 6899999999999999999999998821 3
Q ss_pred CcEEEEEEeccc
Q 014384 117 GRRLRVEWTKHE 128 (425)
Q Consensus 117 gr~l~V~~a~~~ 128 (425)
+++|.|.|+.+.
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 778999998753
No 195
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.60 E-value=1.8e-15 Score=133.23 Aligned_cols=78 Identities=15% Similarity=0.348 Sum_probs=72.0
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 122 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~-------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V 122 (425)
.....++|||+|||+.+|+++|+++|++||+|+.|.|. +|||||+|.+.++|++|+..|||..| +|+.|.|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l--~Gr~l~V 161 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPL--DGRPMDI 161 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBC--SSSBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEE--CCEEEEE
Confidence 34567899999999999999999999999999999993 69999999999999999999999999 8999999
Q ss_pred EEecccc
Q 014384 123 EWTKHER 129 (425)
Q Consensus 123 ~~a~~~~ 129 (425)
+|+....
T Consensus 162 ~~a~~~~ 168 (177)
T 2f3j_A 162 QLVASQI 168 (177)
T ss_dssp EEESSGG
T ss_pred EEecCCC
Confidence 9998654
No 196
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.60 E-value=2e-15 Score=116.61 Aligned_cols=70 Identities=21% Similarity=0.478 Sum_probs=65.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEEe--CCEEEEEEcCHHHHHHHHHhcCCCeecCCCc
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRY----G-------KVDRVDMK--SGFAFIYMDDERDAEDAIRGLDRTEFGRKGR 118 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~----G-------~V~~v~i~--kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr 118 (425)
...++|||+|||+.+|+++|.++|.+| | .|..|.+. +|||||+|.+.++|.+|+ .|||..| +|+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~--~g~ 80 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIF--QGQ 80 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEE--TTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEE--CCe
Confidence 356899999999999999999999999 8 99999985 899999999999999999 9999999 899
Q ss_pred EEEEEE
Q 014384 119 RLRVEW 124 (425)
Q Consensus 119 ~l~V~~ 124 (425)
.|.|+.
T Consensus 81 ~l~V~r 86 (87)
T 2hzc_A 81 SLKIRR 86 (87)
T ss_dssp ECEEEC
T ss_pred EEEEeC
Confidence 999974
No 197
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.60 E-value=1.1e-15 Score=140.37 Aligned_cols=74 Identities=18% Similarity=0.336 Sum_probs=67.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEE--------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEE
Q 014384 53 MMRPIFCGNFEYDARQSDLERLFRRYG--KVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 122 (425)
Q Consensus 53 ~~~~l~V~nL~~~~t~~~L~~lF~~~G--~V~~v~i--------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V 122 (425)
..++|||+||++.+|+++|+++|.+|| +|+.|.| ++|||||+|.+.++|++||..|||+.| +|+.|.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~--~Gr~l~V 144 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL--HGQNPVV 144 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCB--TTBCCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeE--CCEEeEE
Confidence 567999999999999999999999999 9999998 378999999999999999999999999 8999999
Q ss_pred EEeccc
Q 014384 123 EWTKHE 128 (425)
Q Consensus 123 ~~a~~~ 128 (425)
.|+...
T Consensus 145 ~~a~~~ 150 (229)
T 3q2s_C 145 TPVNKQ 150 (229)
T ss_dssp EECCHH
T ss_pred EECCCC
Confidence 998753
No 198
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.5e-15 Score=121.05 Aligned_cols=77 Identities=17% Similarity=0.352 Sum_probs=70.5
Q ss_pred CCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--ccEEEEEEcCHHHHHHHHHHcCC--CccCCeEEEEEEeee
Q 014384 147 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDATNM--SKLTDRVISVEYAVR 222 (425)
Q Consensus 147 ~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~i~v~~a~~ 222 (425)
..+.++|||+|| |..+++++|+++|++||.|..|.|+ +|||||+|.+.++|..|++.|++ ..|.|+.|.|.|+..
T Consensus 13 ~~~~~~LfV~nL-p~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~ 91 (105)
T 1sjq_A 13 GVPSRVIHIRKL-PIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 91 (105)
T ss_dssp CCCCCEEEECSC-CTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSS
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCC
Confidence 456789999999 8899999999999999999999997 68999999999999999998864 789999999999987
Q ss_pred CC
Q 014384 223 DD 224 (425)
Q Consensus 223 ~~ 224 (425)
+.
T Consensus 92 ~~ 93 (105)
T 1sjq_A 92 KE 93 (105)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 199
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.60 E-value=2.8e-15 Score=133.74 Aligned_cols=118 Identities=16% Similarity=0.255 Sum_probs=82.7
Q ss_pred eeeEEEEeCCCCcccccccCCccee-----ecccccccchhhhhhhcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEE
Q 014384 10 CHYLLIVYSHSVWPVQKKYLPRRLY-----VLGFRRSHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRV 84 (425)
Q Consensus 10 ~~y~~i~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v 84 (425)
..||||.|.+...+..+........ ...+................++|||+|||+.+|+++|.++|+.||.|..|
T Consensus 55 ~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v 134 (196)
T 1l3k_A 55 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134 (196)
T ss_dssp EEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEE
T ss_pred cceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEE
Confidence 3499999998776555554322111 11111111111111233456899999999999999999999999999999
Q ss_pred EEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEeccccC
Q 014384 85 DMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERG 130 (425)
Q Consensus 85 ~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~~~ 130 (425)
.|. +|||||+|.+.++|.+|+.. +|..| +|+.|.|.|+.....
T Consensus 135 ~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~--~G~~i~v~~a~~k~~ 185 (196)
T 1l3k_A 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTV--NGHNCEVRKALSKQE 185 (196)
T ss_dssp EEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEE--TTEECEEEECC----
T ss_pred EEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEE--CCEEEEEEecCChhH
Confidence 883 68999999999999999965 89999 899999999987653
No 200
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.60 E-value=5e-15 Score=134.17 Aligned_cols=117 Identities=16% Similarity=0.282 Sum_probs=88.9
Q ss_pred eeeEEEEeCCCCccccccc-CCc------ceeecccccccch-----hhhhhhcCCCceEEEcCCCCCCCHHHHHHHHhh
Q 014384 10 CHYLLIVYSHSVWPVQKKY-LPR------RLYVLGFRRSHSQ-----LSIAAFEAMMRPIFCGNFEYDARQSDLERLFRR 77 (425)
Q Consensus 10 ~~y~~i~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~-----~~~~~~~~~~~~l~V~nL~~~~t~~~L~~lF~~ 77 (425)
..||||.|.+...+..+.. ++. .+.+. ....... ..........++|||+|||..+|+++|.++|++
T Consensus 70 ~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~-~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~ 148 (216)
T 2qfj_A 70 KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVG-RPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEA 148 (216)
T ss_dssp CSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEE-CCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTT
T ss_pred CceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEe-cCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhc
Confidence 3599999988766544442 111 11111 1111110 112234567799999999999999999999999
Q ss_pred cCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEecccc
Q 014384 78 YGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 129 (425)
Q Consensus 78 ~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~~ 129 (425)
||.|..|.|. +|||||+|.+.++|.+|+..|||..| .|+.|.|.|+....
T Consensus 149 ~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~--~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 149 FGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDL--GGQYLRVGKAVTPP 206 (216)
T ss_dssp SSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBC--SSSBCEEEECSSCS
T ss_pred cCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEe--CCcEEEEEEecCCC
Confidence 9999999983 68999999999999999999999999 89999999998764
No 201
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.60 E-value=2e-15 Score=134.94 Aligned_cols=76 Identities=18% Similarity=0.365 Sum_probs=70.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEE
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 123 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~ 123 (425)
...++|||+|||..+|+++|.++|++||.|..|.|. +|||||+|.+.++|.+|+..|||..| +|+.|.|.
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~ 189 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQL--GDKKLLVQ 189 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEEE
Confidence 566999999999999999999999999999999883 68999999999999999999999999 89999999
Q ss_pred Eecccc
Q 014384 124 WTKHER 129 (425)
Q Consensus 124 ~a~~~~ 129 (425)
|+....
T Consensus 190 ~a~~~~ 195 (198)
T 2yh0_A 190 RASVGA 195 (198)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 997643
No 202
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.60 E-value=7.6e-16 Score=133.80 Aligned_cols=113 Identities=14% Similarity=0.238 Sum_probs=85.1
Q ss_pred eeEEEEeCCCCcccccccCCcceeecccccccchhhhhhhcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe---
Q 014384 11 HYLLIVYSHSVWPVQKKYLPRRLYVLGFRRSHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--- 87 (425)
Q Consensus 11 ~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--- 87 (425)
.||||.|.+...+..+......+....+.... ...........+|||+|||+.+|+++|.++|++||.|..|.|.
T Consensus 46 g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~--~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~ 123 (167)
T 2cjk_A 46 GFGFLSFEKPSSVDEVVKTQHILDGKVIDPKR--AIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDK 123 (167)
T ss_dssp SCEEEEESSTHHHHHHHHSCCEETTEECCCEE--CCCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSS
T ss_pred ceEEEEEccHHHHHHHHhcccccCCeEccccc--ccchhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcC
Confidence 59999999887665555422111111111111 1111223456799999999999999999999999999999983
Q ss_pred -----CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEeccc
Q 014384 88 -----SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHE 128 (425)
Q Consensus 88 -----kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~ 128 (425)
+|||||+|.+.++|.+|++ |||..| .|+.|.|.|+.+.
T Consensus 124 ~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~--~g~~i~V~~a~pk 166 (167)
T 2cjk_A 124 DTGQSRGFGFVTYDSADAVDRVCQ-NKFIDF--KDRKIEIKRAEPR 166 (167)
T ss_dssp SSSTTSEEEEEEESSHHHHHHHHH-CSEECS--SSSCEEEEECCCC
T ss_pred CCCccceEEEEEECCHHHHHHHHh-CCCEEe--CCeEEEEeecCCC
Confidence 5899999999999999996 899999 8999999998753
No 203
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.2e-15 Score=121.97 Aligned_cols=76 Identities=17% Similarity=0.246 Sum_probs=67.4
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE-------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM-------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 122 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i-------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V 122 (425)
.+...++|||+|||+++|+++|+++|..||.| .|.| ++|||||+|.+.++|++|| .+|+..| .|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~--~gr~i~V 86 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANM--QHRYVEL 86 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCS--SSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeE--CCcEEEE
Confidence 34567899999999999999999999999955 7877 3789999999999999999 6899999 8999999
Q ss_pred EEecccc
Q 014384 123 EWTKHER 129 (425)
Q Consensus 123 ~~a~~~~ 129 (425)
.++....
T Consensus 87 ~~~~~~~ 93 (102)
T 1wez_A 87 FLNSTAG 93 (102)
T ss_dssp EEECCCC
T ss_pred EECCCCC
Confidence 9887544
No 204
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=6.1e-15 Score=117.58 Aligned_cols=80 Identities=33% Similarity=0.482 Sum_probs=73.3
Q ss_pred CCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEE
Q 014384 145 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 216 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 216 (425)
....+..+|||+|| |..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|.+|++.||+..|+|+.|.
T Consensus 7 ~~~~~~~~l~v~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 1x5s_A 7 GMASDEGKLFVGGL-SFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIR 85 (102)
T ss_dssp CCCCCCSEEEEESC-CTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCE
T ss_pred CCCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34567799999999 8899999999999999999999995 46999999999999999999999999999999
Q ss_pred EEEeeeCCC
Q 014384 217 VEYAVRDDD 225 (425)
Q Consensus 217 v~~a~~~~~ 225 (425)
|.++.....
T Consensus 86 v~~a~~~~~ 94 (102)
T 1x5s_A 86 VDQAGKSSD 94 (102)
T ss_dssp EEEEECCCC
T ss_pred EEECCCCCC
Confidence 999988643
No 205
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=6.2e-16 Score=128.15 Aligned_cols=75 Identities=13% Similarity=0.262 Sum_probs=67.0
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEE-------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEE
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDR-VDM-------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 122 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~-v~i-------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V 122 (425)
....++|||+|||+++|+++|.++|..||.|.. +.| ++|||||+|.+.++|++||. |||..| +|+.|.|
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~--~gr~i~V 98 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYM--GNRFIQV 98 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCS--TTSCBEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeE--CCcEEEE
Confidence 456689999999999999999999999999876 333 37999999999999999997 999999 8999999
Q ss_pred EEeccc
Q 014384 123 EWTKHE 128 (425)
Q Consensus 123 ~~a~~~ 128 (425)
.++...
T Consensus 99 ~~a~~~ 104 (124)
T 1wel_A 99 HPITKK 104 (124)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998654
No 206
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=8.5e-15 Score=116.08 Aligned_cols=78 Identities=27% Similarity=0.469 Sum_probs=72.2
Q ss_pred CCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEE
Q 014384 147 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218 (425)
Q Consensus 147 ~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 218 (425)
..+.++|||+|| |..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|.+|++.||+..|.|+.|.|.
T Consensus 5 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 5 SSGSGRLFVRNL-SYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCSCEEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 456789999999 8899999999999999999999995 4799999999999999999999999999999999
Q ss_pred EeeeCCC
Q 014384 219 YAVRDDD 225 (425)
Q Consensus 219 ~a~~~~~ 225 (425)
++..+..
T Consensus 84 ~a~~~~~ 90 (99)
T 1whw_A 84 PSTIKKE 90 (99)
T ss_dssp ECCCCST
T ss_pred EcCCCcc
Confidence 9988644
No 207
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=7.9e-15 Score=117.58 Aligned_cols=81 Identities=21% Similarity=0.311 Sum_probs=73.6
Q ss_pred CCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEE
Q 014384 144 STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVI 215 (425)
Q Consensus 144 ~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 215 (425)
.....+.++|||+|| |..+++++|+++|.+||.|..|.|. +|||||+|.+.++|.+|++.||+..|+|+.|
T Consensus 9 ~~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (105)
T 1x5u_A 9 ISERNQDATVYVGGL-DEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPI 87 (105)
T ss_dssp CCCCCTTTEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBC
T ss_pred cccCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 345567899999999 8899999999999999999999995 4699999999999999999999999999999
Q ss_pred EEEEeeeCCC
Q 014384 216 SVEYAVRDDD 225 (425)
Q Consensus 216 ~v~~a~~~~~ 225 (425)
.|.++..+..
T Consensus 88 ~v~~a~~~~~ 97 (105)
T 1x5u_A 88 RVNKASAHNK 97 (105)
T ss_dssp EEEETTTTSC
T ss_pred EEEECCCCCc
Confidence 9999987643
No 208
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.59 E-value=1.8e-14 Score=117.55 Aligned_cols=82 Identities=24% Similarity=0.404 Sum_probs=74.0
Q ss_pred CCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEE
Q 014384 144 STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVI 215 (425)
Q Consensus 144 ~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 215 (425)
.....+..+|||+|| |..+++++|+++|.+||.|..|.|. +|||||+|.+.++|.+|++.||+..|+|+.|
T Consensus 9 ~~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDL-SPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp CCCSTTCEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 344567899999999 8899999999999999999999995 4699999999999999999999999999999
Q ss_pred EEEEeeeCCCC
Q 014384 216 SVEYAVRDDDD 226 (425)
Q Consensus 216 ~v~~a~~~~~~ 226 (425)
.|.|+..+...
T Consensus 88 ~V~~a~~~~~~ 98 (115)
T 2dgo_A 88 RTNWATRKPPA 98 (115)
T ss_dssp EEEESSCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999876433
No 209
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.59 E-value=3.6e-15 Score=121.81 Aligned_cols=73 Identities=29% Similarity=0.481 Sum_probs=68.7
Q ss_pred CcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeC
Q 014384 150 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 223 (425)
Q Consensus 150 ~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 223 (425)
..+|||+|| |..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|.+|++.|||..|+|+.|.|.++...
T Consensus 5 ~~~lfV~nL-p~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 5 SGNIFIKNL-DKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp CCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCEEEECCC-CCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 568999999 8899999999999999999999986 679999999999999999999999999999999998764
No 210
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.59 E-value=8.9e-16 Score=115.21 Aligned_cols=67 Identities=18% Similarity=0.445 Sum_probs=62.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEe
Q 014384 56 PIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 125 (425)
Q Consensus 56 ~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a 125 (425)
+|||+|||+.+|+++|.++|++||+|..|.|. +|||||+|.+.++|++|+. +++..| .|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~--~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNV--GLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCB--TTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeE--CCEEEEEEEC
Confidence 69999999999999999999999999999883 7899999999999999995 588888 8999999875
No 211
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.59 E-value=1.3e-14 Score=116.41 Aligned_cols=79 Identities=24% Similarity=0.389 Sum_probs=72.5
Q ss_pred CCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe-------ccEEEEEEcCHHHHHHHHHHcCCCccCC---eEE
Q 014384 146 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTD---RVI 215 (425)
Q Consensus 146 ~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~i 215 (425)
...+.++|||+|| |..+++++|+++|.+||.|..|.|. +|||||+|.+.++|.+|++.||+..|.| +.|
T Consensus 11 ~~~~~~~l~v~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGML-NKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 3456899999999 8899999999999999999999996 5799999999999999999999999998 999
Q ss_pred EEEEeeeCCC
Q 014384 216 SVEYAVRDDD 225 (425)
Q Consensus 216 ~v~~a~~~~~ 225 (425)
.|.++..+..
T Consensus 90 ~V~~a~~~~~ 99 (105)
T 2dnh_A 90 VVKFADTDKE 99 (105)
T ss_dssp EEEESCSSCC
T ss_pred EEEECccCcc
Confidence 9999988643
No 212
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.2e-14 Score=115.21 Aligned_cols=78 Identities=21% Similarity=0.432 Sum_probs=71.5
Q ss_pred CCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEE
Q 014384 146 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217 (425)
Q Consensus 146 ~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 217 (425)
...+.++|||+|| |..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|.+|++ ||+..|+|+.|.|
T Consensus 6 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 6 SGSKSNKIFVGGI-PHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCSSCCEEEEESC-CSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 4566789999999 8899999999999999999999995 5799999999999999998 9999999999999
Q ss_pred EEeeeCCC
Q 014384 218 EYAVRDDD 225 (425)
Q Consensus 218 ~~a~~~~~ 225 (425)
.++..+..
T Consensus 84 ~~a~~~~~ 91 (99)
T 2dgs_A 84 KRAEPRDS 91 (99)
T ss_dssp EECCCCCC
T ss_pred EECCCCcc
Confidence 99987543
No 213
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.59 E-value=2.3e-15 Score=131.55 Aligned_cols=116 Identities=13% Similarity=0.226 Sum_probs=83.2
Q ss_pred eeeEEEEeCCCCccccccc-CCc-ceeecccccc--cchhhhhhhcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEE
Q 014384 10 CHYLLIVYSHSVWPVQKKY-LPR-RLYVLGFRRS--HSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVD 85 (425)
Q Consensus 10 ~~y~~i~~~~~~~~~~~~~-~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~ 85 (425)
..||||.|.+...+..+.. +.. .+........ .............++|||+|||+.+|+++|.++|++||.|..|.
T Consensus 47 ~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~ 126 (175)
T 3nmr_A 47 KGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECR 126 (175)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEE
T ss_pred ceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEE
Confidence 4599999988766444431 111 1110000000 00011112233568999999999999999999999999999999
Q ss_pred Ee-------CCEEEEEEcCHHHHHHHHHhcCCCeecCC--CcEEEEEEec
Q 014384 86 MK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRK--GRRLRVEWTK 126 (425)
Q Consensus 86 i~-------kg~aFV~F~~~~~A~~A~~~lng~~ig~~--gr~l~V~~a~ 126 (425)
|. +|||||+|.+.++|.+|+..|||..+. . +++|.|.||.
T Consensus 127 ~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~-~g~~~~l~V~~ad 175 (175)
T 3nmr_A 127 ILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTM-EGCSSPMVVKFAD 175 (175)
T ss_dssp EEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCC-TTCSSCCEEEECC
T ss_pred EEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCccc-CCCCCCeEEEecC
Confidence 83 789999999999999999999998773 3 4999999974
No 214
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=9.7e-15 Score=116.01 Aligned_cols=79 Identities=19% Similarity=0.413 Sum_probs=72.4
Q ss_pred CCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe-------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEE
Q 014384 145 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 217 (425)
....+.++|||+|| |..+++++|+++|.+||.|..|.+. +|||||+|.+.++|.+|++.||+..|+|+.|.|
T Consensus 12 ~~~~~~~~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 12 STSLEKHKLFISGL-PFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SSCCCCSCEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred ccCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34566789999999 8899999999999999999999996 389999999999999999999999999999999
Q ss_pred EEeeeCC
Q 014384 218 EYAVRDD 224 (425)
Q Consensus 218 ~~a~~~~ 224 (425)
.++..+.
T Consensus 91 ~~a~~~~ 97 (100)
T 2do4_A 91 AISNSGP 97 (100)
T ss_dssp EECCCCS
T ss_pred EECCCCC
Confidence 9998753
No 215
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5.1e-15 Score=116.79 Aligned_cols=76 Identities=26% Similarity=0.320 Sum_probs=71.3
Q ss_pred CCCCcEEEEEcCCCCCCCHHHHH----hhhccCCcEEEEEEe-----ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEE
Q 014384 147 TRPSKTLFVINFDPYHTRTRDLE----RHFEPYGKIISVRIR-----RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217 (425)
Q Consensus 147 ~~~~~~l~V~nl~p~~~~~~~L~----~~f~~~G~v~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 217 (425)
....++|||+|| |..+++++|+ ++|.+||.|..|.|+ ++||||+|.+.++|.+|++.|||..|+|+.|.|
T Consensus 6 ~~~~~~l~V~nL-~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 6 SGNGADVQVSNI-DYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp CSSCEEEEEESC-CTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCEEEEECC-CCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 445689999999 8999999999 999999999999998 889999999999999999999999999999999
Q ss_pred EEeeeC
Q 014384 218 EYAVRD 223 (425)
Q Consensus 218 ~~a~~~ 223 (425)
.++...
T Consensus 85 ~~a~~~ 90 (96)
T 2dgx_A 85 SLATGA 90 (96)
T ss_dssp EECCCS
T ss_pred EEcCCC
Confidence 999764
No 216
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.59 E-value=1e-14 Score=119.33 Aligned_cols=77 Identities=27% Similarity=0.363 Sum_probs=71.1
Q ss_pred CCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEec-------cEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEE
Q 014384 147 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRR-------NFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 219 (425)
Q Consensus 147 ~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~~-------g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 219 (425)
..+..+|||+|| |..+++++|+++|++||.|..|.|.. |||||+|.+.++|.+|++.|||..|+|+.|.|++
T Consensus 4 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGL-NRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECC-TTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345689999999 88999999999999999999999963 8999999999999999999999999999999999
Q ss_pred eeeCC
Q 014384 220 AVRDD 224 (425)
Q Consensus 220 a~~~~ 224 (425)
+....
T Consensus 83 a~~~~ 87 (116)
T 2fy1_A 83 AKKPS 87 (116)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 98753
No 217
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=6.1e-15 Score=117.87 Aligned_cols=79 Identities=34% Similarity=0.449 Sum_probs=72.6
Q ss_pred CCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEE
Q 014384 145 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 216 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 216 (425)
....+.++|||+|| |..+++++|+++|.+||.|..|.|. +|||||+|.+.++|.+|++.||+..|+|+.|.
T Consensus 8 ~~~~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 8 PDVDGMITLKVDNL-TYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SCCSCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCeEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 34566799999999 8899999999999999999999985 57999999999999999999999999999999
Q ss_pred EEEeeeCC
Q 014384 217 VEYAVRDD 224 (425)
Q Consensus 217 v~~a~~~~ 224 (425)
|.++....
T Consensus 87 V~~a~~~~ 94 (103)
T 2dnm_A 87 VQVARYGR 94 (103)
T ss_dssp EEECSSCC
T ss_pred EEECCcCC
Confidence 99998753
No 218
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.59 E-value=2.2e-15 Score=124.16 Aligned_cols=76 Identities=17% Similarity=0.295 Sum_probs=70.0
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEecc
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKH 127 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~ 127 (425)
.....++|||+|| ++|+++|.++|++||.|..|.|. +|||||+|.+.++|.+|+..|||..| .|+.|.|.|+..
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~--~g~~l~V~~a~~ 110 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQV--ESVQLKVNIARK 110 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBC--SSCBCEEEECCS
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEEEEeCC
Confidence 4456799999996 69999999999999999999985 89999999999999999999999999 899999999986
Q ss_pred cc
Q 014384 128 ER 129 (425)
Q Consensus 128 ~~ 129 (425)
..
T Consensus 111 ~~ 112 (121)
T 2bz2_A 111 QP 112 (121)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 219
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.59 E-value=2e-15 Score=130.87 Aligned_cols=112 Identities=21% Similarity=0.283 Sum_probs=82.3
Q ss_pred eeEEEEeCCCCccccccc-CCcceeecccccccchhhhhhhcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--
Q 014384 11 HYLLIVYSHSVWPVQKKY-LPRRLYVLGFRRSHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-- 87 (425)
Q Consensus 11 ~y~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~-- 87 (425)
.||||.|.+...+..+.. ++..... ...................+|||+|||..+|+++|.++|++||.|..|.+.
T Consensus 45 g~afV~f~~~~~A~~a~~~l~~~~~~-g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~ 123 (167)
T 1fxl_A 45 GYGFVNYIDPKDAEKAINTLNGLRLQ-TKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 123 (167)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCEET-TEECEEEECCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC
T ss_pred eEEEEEECCHHHHHHHHHHcCCCccC-CceEEEEecCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEec
Confidence 699999988776555442 1221111 110000000111233456899999999999999999999999999999883
Q ss_pred ------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCc--EEEEEEe
Q 014384 88 ------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGR--RLRVEWT 125 (425)
Q Consensus 88 ------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr--~l~V~~a 125 (425)
+|||||+|.+.++|.+|+..|||..| .|+ .|.|.||
T Consensus 124 ~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~~~i~v~~A 167 (167)
T 1fxl_A 124 QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKP--SGATEPITVKFA 167 (167)
T ss_dssp TTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC--TTCSSCCEEEEC
T ss_pred CCCCCccceEEEEeCCHHHHHHHHHHhcCCcc--CCCccceEEEeC
Confidence 68999999999999999999999999 675 5888876
No 220
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=8.3e-15 Score=114.94 Aligned_cols=78 Identities=29% Similarity=0.488 Sum_probs=71.3
Q ss_pred CCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeE
Q 014384 143 PSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRV 214 (425)
Q Consensus 143 ~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 214 (425)
......+.++|||+|| |..+++++|+++|++||.|..|.++ ++||||+|.+.++|.+|++.||+..|.|+.
T Consensus 9 ~~~~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 87 (94)
T 2e5h_A 9 SGGLAPSKSTVYVSNL-PFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRV 87 (94)
T ss_dssp CCSCCCCTTSEEEESC-CTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEE
T ss_pred CCCCCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 3445667889999999 8899999999999999999999995 479999999999999999999999999999
Q ss_pred EEEEEee
Q 014384 215 ISVEYAV 221 (425)
Q Consensus 215 i~v~~a~ 221 (425)
|.|.||+
T Consensus 88 l~v~~ak 94 (94)
T 2e5h_A 88 IKASIAI 94 (94)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9999974
No 221
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.59 E-value=1.5e-15 Score=128.96 Aligned_cols=77 Identities=22% Similarity=0.402 Sum_probs=69.1
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEE-----eCCEEEEEEcCHHHHHHHHHhcCCCeecCCC
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDR--------VDM-----KSGFAFIYMDDERDAEDAIRGLDRTEFGRKG 117 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~--------v~i-----~kg~aFV~F~~~~~A~~A~~~lng~~ig~~g 117 (425)
..+.++|||+|||+.+|+++|.++|..||.|.. |.+ .+|||||+|.+.++|.+|+..|||..| .|
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~--~g 119 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL--FG 119 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEE--TT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEe--CC
Confidence 456789999999999999999999999998865 333 379999999999999999999999999 89
Q ss_pred cEEEEEEecccc
Q 014384 118 RRLRVEWTKHER 129 (425)
Q Consensus 118 r~l~V~~a~~~~ 129 (425)
+.|.|.|+....
T Consensus 120 ~~l~V~~a~~~~ 131 (143)
T 3egn_A 120 KPMVVQFARSAR 131 (143)
T ss_dssp EECEEEECCCSC
T ss_pred cEEEEEECCCCC
Confidence 999999997654
No 222
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.59 E-value=6.1e-15 Score=113.40 Aligned_cols=74 Identities=35% Similarity=0.573 Sum_probs=69.1
Q ss_pred CCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEE
Q 014384 147 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218 (425)
Q Consensus 147 ~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 218 (425)
..+.++|||+|| |..+++++|+++|.+||.|..|.++ +|||||+|.+.++|..|++.|||..|+|+.|.|.
T Consensus 4 ~~~~~~l~V~nl-~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 4 ATTKRVLYVGGL-AEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCSSEEEEECC-CTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEECC-CCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 456799999999 7889999999999999999999983 6799999999999999999999999999999999
Q ss_pred Eee
Q 014384 219 YAV 221 (425)
Q Consensus 219 ~a~ 221 (425)
+++
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 974
No 223
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.1e-14 Score=116.57 Aligned_cols=79 Identities=25% Similarity=0.450 Sum_probs=71.5
Q ss_pred CCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe---------ccEEEEEEcCHHHHHHHHHHcCCCccCCeE
Q 014384 144 STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR---------RNFAFVQYEVQEDATRALDATNMSKLTDRV 214 (425)
Q Consensus 144 ~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~---------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 214 (425)
.....+..+|||+|| |..+++++|+++|.+|| |..|.|+ +|||||+|.+.++|.+|+ .||+..|+|+.
T Consensus 9 ~~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 85 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNL-PYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKR 85 (104)
T ss_dssp CCCSSSCEEEEEESC-CSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEE
T ss_pred CCCCCCCCEEEEeCC-CCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcE
Confidence 344567799999999 88999999999999999 9999985 569999999999999999 99999999999
Q ss_pred EEEEEeeeCCC
Q 014384 215 ISVEYAVRDDD 225 (425)
Q Consensus 215 i~v~~a~~~~~ 225 (425)
|.|.++..+..
T Consensus 86 l~V~~a~~~~~ 96 (104)
T 1wi8_A 86 IRVDVADQAQD 96 (104)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEEccCCCC
Confidence 99999988643
No 224
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.58 E-value=5.6e-15 Score=114.12 Aligned_cols=76 Identities=24% Similarity=0.387 Sum_probs=67.7
Q ss_pred CCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEE
Q 014384 147 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218 (425)
Q Consensus 147 ~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 218 (425)
..+..+|||+|| |..+++++|+++|++||.|..|.++ +|||||+|.+.++|.+|++.|||..|+|+.|.|.
T Consensus 3 ~~~~~~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (87)
T 3bs9_A 3 LGSHFHVFVGDL-SPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 81 (87)
T ss_dssp ---CEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCceEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 346789999999 7889999999999999999999995 4699999999999999999999999999999999
Q ss_pred EeeeC
Q 014384 219 YAVRD 223 (425)
Q Consensus 219 ~a~~~ 223 (425)
++..+
T Consensus 82 ~a~~k 86 (87)
T 3bs9_A 82 WATRK 86 (87)
T ss_dssp EEC--
T ss_pred ecCCC
Confidence 99764
No 225
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.58 E-value=2.8e-15 Score=121.01 Aligned_cols=79 Identities=27% Similarity=0.520 Sum_probs=72.8
Q ss_pred CCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEeccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeCC
Q 014384 145 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDD 224 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~ 224 (425)
....+.++|||+|| |..+++++|+++|.+||.|..|.+.+|||||+|.+.++|.+|++.|||..|+|+.|.|.++....
T Consensus 26 ~~~~~~~~l~V~nL-p~~~t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 26 EGELSNTRLFVRPF-PLDVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPA 104 (108)
T ss_dssp --CCSCSEEEECSS-CTTCCHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC
T ss_pred CCCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCC
Confidence 34566789999999 88999999999999999999999999999999999999999999999999999999999998753
No 226
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.36 E-value=1.3e-16 Score=130.71 Aligned_cols=80 Identities=20% Similarity=0.358 Sum_probs=71.9
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEE--------eCCEEEEEEcCHHHHHHHHHhcCCCee
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDR--------VDM--------KSGFAFIYMDDERDAEDAIRGLDRTEF 113 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~--------v~i--------~kg~aFV~F~~~~~A~~A~~~lng~~i 113 (425)
...+.++|||+|||..+|+++|.++|++||.|.. |.| .+|||||+|.+.++|.+|+..|||..|
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 3456789999999999999999999999999988 666 268999999999999999999999999
Q ss_pred cCCCcEEEEEEeccccCC
Q 014384 114 GRKGRRLRVEWTKHERGI 131 (425)
Q Consensus 114 g~~gr~l~V~~a~~~~~~ 131 (425)
.|+.|.|.++......
T Consensus 83 --~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 83 --SGNPIKVSFATRRADF 98 (116)
Confidence 8999999999876543
No 227
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.7e-15 Score=121.70 Aligned_cols=78 Identities=17% Similarity=0.349 Sum_probs=71.2
Q ss_pred CCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--ccEEEEEEcCHHHHHHHHHHcC--CCccCCeEEEEEEee
Q 014384 146 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDATN--MSKLTDRVISVEYAV 221 (425)
Q Consensus 146 ~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--~g~afV~f~~~~~A~~A~~~l~--g~~~~g~~i~v~~a~ 221 (425)
...+.++|||+|| |..+++++|+++|++||.|+.|.|+ +|||||+|.+.++|.+|++.|+ +..|.|+.|.|.|+.
T Consensus 27 ~~~ps~~LfVgNL-p~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 105 (119)
T 2ad9_A 27 AGVPSRVIHIRKL-PIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 105 (119)
T ss_dssp CSSCCSEEEEESC-CTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECS
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEcc
Confidence 4567889999999 8889999999999999999999997 6899999999999999999887 468999999999998
Q ss_pred eCC
Q 014384 222 RDD 224 (425)
Q Consensus 222 ~~~ 224 (425)
.+.
T Consensus 106 ~k~ 108 (119)
T 2ad9_A 106 HKE 108 (119)
T ss_dssp SSS
T ss_pred CCC
Confidence 754
No 228
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.1e-14 Score=115.44 Aligned_cols=80 Identities=25% Similarity=0.372 Sum_probs=73.5
Q ss_pred CCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEee
Q 014384 144 STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221 (425)
Q Consensus 144 ~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 221 (425)
.....+.++|||+|| |..+++++|+++|.+||.|..|.+. ++||||+|.+.++|.+|++.||+..|.|+.|.|.++.
T Consensus 9 ~~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 9 EKTFTQRSRLFVGNL-PPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp SCCCCCTTEEEEESC-CTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred CCcCCCCCEEEEeCC-CCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 344567789999999 8889999999999999999999997 5899999999999999999999999999999999998
Q ss_pred eCC
Q 014384 222 RDD 224 (425)
Q Consensus 222 ~~~ 224 (425)
.+.
T Consensus 88 ~~~ 90 (99)
T 2cpj_A 88 HSA 90 (99)
T ss_dssp CCS
T ss_pred CCC
Confidence 754
No 229
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=7.9e-15 Score=118.43 Aligned_cols=79 Identities=22% Similarity=0.340 Sum_probs=70.9
Q ss_pred CCCCCCcEEEEEcCCCCC-CCHHHHHhhhccCCcEEEEEEe--ccEEEEEEcCHHHHHHHHHHcC--CCccCCeEEEEEE
Q 014384 145 TNTRPSKTLFVINFDPYH-TRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDATN--MSKLTDRVISVEY 219 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~p~~-~~~~~L~~~f~~~G~v~~v~~~--~g~afV~f~~~~~A~~A~~~l~--g~~~~g~~i~v~~ 219 (425)
....+.++|||+|| |.. +++++|+++|++||.|..|.|. +|||||+|.+.++|..|++.|+ +..|.|+.|.|.|
T Consensus 20 ~~~~p~~~l~V~NL-p~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 20 QKQELGRVIHLSNL-PHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp CSSCCCCEEEEESC-CCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred ccCCCCCEEEEeCC-CCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 34667899999999 786 9999999999999999999997 6899999999999999999886 4669999999999
Q ss_pred eeeCC
Q 014384 220 AVRDD 224 (425)
Q Consensus 220 a~~~~ 224 (425)
+....
T Consensus 99 a~~~~ 103 (112)
T 1x4f_A 99 SEKYK 103 (112)
T ss_dssp ECSCS
T ss_pred Ccccc
Confidence 98754
No 230
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.58 E-value=1.3e-15 Score=133.63 Aligned_cols=116 Identities=15% Similarity=0.196 Sum_probs=85.4
Q ss_pred eeEEEEeCCCCcccccccCCcceeeccccc-ccchhhhhhhcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE---
Q 014384 11 HYLLIVYSHSVWPVQKKYLPRRLYVLGFRR-SHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--- 86 (425)
Q Consensus 11 ~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--- 86 (425)
.||||.|.+...+..+..++........+. ..............++|||+|||..+|+++|.++|+.||.|..+..
T Consensus 55 g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~ 134 (175)
T 1fje_B 55 KFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGK 134 (175)
T ss_dssp TEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSS
T ss_pred cEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCC
Confidence 599999998776555443222211110000 0000001123345689999999999999999999999999988822
Q ss_pred eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEeccc
Q 014384 87 KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHE 128 (425)
Q Consensus 87 ~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~ 128 (425)
++|||||+|.+.++|.+|+..|||..| .|+.|.|.|+...
T Consensus 135 ~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~i~v~~a~~k 174 (175)
T 1fje_B 135 SKGIAYIEFKSEADAEKNLEEKQGAEI--DGRSVSLYYTGEK 174 (175)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHTEEEE--TTEEEEEEECSSC
T ss_pred CceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEEEecCCC
Confidence 379999999999999999999999999 8999999999753
No 231
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5.7e-15 Score=117.77 Aligned_cols=79 Identities=33% Similarity=0.505 Sum_probs=72.6
Q ss_pred CCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEE
Q 014384 145 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 216 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 216 (425)
....+.++|||+|| |..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|.+|++.||+..|+|+.|.
T Consensus 7 ~~~~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2cqb_A 7 GMATTKRVLYVGGL-AEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 85 (102)
T ss_dssp CSCCCCSCEEEESC-CSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CcCCCCCEEEEeCC-CCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 34567899999999 8889999999999999999999984 67999999999999999999999999999999
Q ss_pred EEEeeeCC
Q 014384 217 VEYAVRDD 224 (425)
Q Consensus 217 v~~a~~~~ 224 (425)
|.++....
T Consensus 86 V~~a~~~~ 93 (102)
T 2cqb_A 86 VNLAKPMR 93 (102)
T ss_dssp EEECCCCC
T ss_pred EEeCCCCC
Confidence 99998764
No 232
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=4.2e-15 Score=119.99 Aligned_cols=71 Identities=17% Similarity=0.242 Sum_probs=65.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEec
Q 014384 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 126 (425)
Q Consensus 54 ~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~-------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~ 126 (425)
..+|||+|||+++|+++|+++|+.| .|..|.|. +|||||+|.+.++|++|| .||+..| .|+.|.|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~--~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLM--IQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEE--TTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeE--CCeEEEEEECC
Confidence 4799999999999999999999999 89999883 899999999999999999 7999999 79999998876
Q ss_pred cc
Q 014384 127 HE 128 (425)
Q Consensus 127 ~~ 128 (425)
..
T Consensus 92 ~~ 93 (109)
T 2dnn_A 92 ER 93 (109)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 233
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.58 E-value=2e-15 Score=122.12 Aligned_cols=75 Identities=16% Similarity=0.140 Sum_probs=69.3
Q ss_pred CCCcEEEEEcCCCCCCCHHHHHhhhccCC-cEEEEEEe----ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeee
Q 014384 148 RPSKTLFVINFDPYHTRTRDLERHFEPYG-KIISVRIR----RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 222 (425)
Q Consensus 148 ~~~~~l~V~nl~p~~~~~~~L~~~f~~~G-~v~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 222 (425)
....+|||+|| |..+++++|+++|.+|| .|..+.+. +|||||+|.+.++|.+|++.|||..|+|+.|.|+++..
T Consensus 26 ~~~~~l~VgnL-p~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 26 AKRYRITMKNL-PEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCEEEEEECS-SCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCEEEEECC-CCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 34689999999 89999999999999999 89999985 79999999999999999999999999999999999875
Q ss_pred C
Q 014384 223 D 223 (425)
Q Consensus 223 ~ 223 (425)
.
T Consensus 105 ~ 105 (111)
T 2jvr_A 105 P 105 (111)
T ss_dssp -
T ss_pred C
Confidence 4
No 234
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.58 E-value=9.5e-15 Score=113.01 Aligned_cols=74 Identities=16% Similarity=0.369 Sum_probs=69.3
Q ss_pred CCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEE---------eccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEE
Q 014384 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI---------RRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 219 (425)
Q Consensus 149 ~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~---------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 219 (425)
..++|||+|| |..+++++|+++|.+||.|..|.+ .+|||||+|.+.++|.+|++.|||..|+|+.|.|.+
T Consensus 3 ~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRL-TRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 4579999999 889999999999999999999988 478999999999999999999999999999999999
Q ss_pred eeeC
Q 014384 220 AVRD 223 (425)
Q Consensus 220 a~~~ 223 (425)
+...
T Consensus 82 a~~~ 85 (88)
T 4a8x_A 82 VLAP 85 (88)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 9764
No 235
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=8.9e-15 Score=115.75 Aligned_cols=76 Identities=28% Similarity=0.411 Sum_probs=70.3
Q ss_pred CCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe-----------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEE
Q 014384 148 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-----------RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 216 (425)
Q Consensus 148 ~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 216 (425)
.+.++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|.+|++.||+..|+|+.|.
T Consensus 3 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 3 SGSSGLFIKNL-NFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 45789999999 8899999999999999999999885 36999999999999999999999999999999
Q ss_pred EEEeeeCC
Q 014384 217 VEYAVRDD 224 (425)
Q Consensus 217 v~~a~~~~ 224 (425)
|.++....
T Consensus 82 V~~a~~~~ 89 (98)
T 2cpf_A 82 VRISERAT 89 (98)
T ss_dssp EECSSCSS
T ss_pred EEEccCCC
Confidence 99998754
No 236
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.58 E-value=7.1e-16 Score=129.95 Aligned_cols=76 Identities=17% Similarity=0.240 Sum_probs=67.0
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 122 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~-------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V 122 (425)
.....++|||+|||+++|+++|+++|++|| |..|.|. +|||||+|.+.++|++|| .||+..| .|+.|.|
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l--~gR~i~V 117 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANM--QHRYIEL 117 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSS--SSCCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEE--CCEEEEE
Confidence 445678999999999999999999999999 6688883 799999999999999999 8999999 7999999
Q ss_pred EEecccc
Q 014384 123 EWTKHER 129 (425)
Q Consensus 123 ~~a~~~~ 129 (425)
.++....
T Consensus 118 ~~a~~~~ 124 (139)
T 2hgn_A 118 FLNSTTG 124 (139)
T ss_dssp EECCCSC
T ss_pred EECCCCC
Confidence 9887654
No 237
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.8e-14 Score=116.70 Aligned_cols=80 Identities=29% Similarity=0.495 Sum_probs=73.2
Q ss_pred CCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcC------CCc
Q 014384 144 STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATN------MSK 209 (425)
Q Consensus 144 ~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~------g~~ 209 (425)
.....+.++|||+|| |..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|.+|++.|| +..
T Consensus 9 ~~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~ 87 (111)
T 1x4h_A 9 PSDVTEGKTVFIRNL-SFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLK 87 (111)
T ss_dssp CCCCCCCCCEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEE
T ss_pred CCcCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcE
Confidence 345567889999999 8899999999999999999999995 6799999999999999999999 999
Q ss_pred cCCeEEEEEEeeeCC
Q 014384 210 LTDRVISVEYAVRDD 224 (425)
Q Consensus 210 ~~g~~i~v~~a~~~~ 224 (425)
|+|+.|.|.++..+.
T Consensus 88 ~~g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 88 LDGRQLKVDLAVTRD 102 (111)
T ss_dssp SSSCEEEEECCCCCC
T ss_pred EcCEEEEEEECCCCc
Confidence 999999999998754
No 238
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.57 E-value=1.1e-14 Score=125.65 Aligned_cols=79 Identities=27% Similarity=0.410 Sum_probs=72.4
Q ss_pred CCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEE
Q 014384 146 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217 (425)
Q Consensus 146 ~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 217 (425)
...+.++|||+|| |..+++++|+++|++||.|..|.|+ ++||||+|.+.++|.+||+.||+..|+|+.|.|
T Consensus 35 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 35 LLKKSCTLYVGNL-SFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTCCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3456789999999 8899999999999999999999994 579999999999999999999999999999999
Q ss_pred EEeeeCCC
Q 014384 218 EYAVRDDD 225 (425)
Q Consensus 218 ~~a~~~~~ 225 (425)
+|+.....
T Consensus 114 ~~a~~~~~ 121 (156)
T 1h2v_Z 114 DWDAGFKE 121 (156)
T ss_dssp EEESCCCT
T ss_pred EECCCCCC
Confidence 99987543
No 239
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.9e-15 Score=116.28 Aligned_cols=76 Identities=26% Similarity=0.474 Sum_probs=70.3
Q ss_pred CCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEE-EEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEE
Q 014384 148 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISV-RIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218 (425)
Q Consensus 148 ~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v-~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 218 (425)
.+.++|||+|| |..+++++|+++|.+||.|..| .|+ +|||||+|.+.++|.+|++.||+..|+|+.|.|.
T Consensus 3 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 3 SGSSGIFIGNL-DPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp SCCCEEEEECC-CTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45789999999 8889999999999999999988 875 5799999999999999999999999999999999
Q ss_pred EeeeCC
Q 014384 219 YAVRDD 224 (425)
Q Consensus 219 ~a~~~~ 224 (425)
++..+.
T Consensus 82 ~a~~~~ 87 (96)
T 1x5t_A 82 YAFKKD 87 (96)
T ss_dssp ESCCCC
T ss_pred EecccC
Confidence 998754
No 240
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=9.7e-15 Score=114.74 Aligned_cols=79 Identities=35% Similarity=0.451 Sum_probs=71.9
Q ss_pred CCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeE
Q 014384 143 PSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRV 214 (425)
Q Consensus 143 ~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 214 (425)
......+.++|||+|| |..+++++|+++|.+||.|..|.++ +|||||+|.+.++|.+|++.||+..|+|+.
T Consensus 8 ~~~~~~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 86 (95)
T 2cqc_A 8 NRANPDPNCCLGVFGL-SLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 86 (95)
T ss_dssp CCCSCCGGGCEEEESC-CSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 3445677899999999 8889999999999999999999985 469999999999999999999999999999
Q ss_pred EEEEEeee
Q 014384 215 ISVEYAVR 222 (425)
Q Consensus 215 i~v~~a~~ 222 (425)
|.|.+++.
T Consensus 87 l~v~~a~~ 94 (95)
T 2cqc_A 87 IRVSGPSS 94 (95)
T ss_dssp EEEECCSC
T ss_pred EEEEecCC
Confidence 99999864
No 241
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.57 E-value=1.1e-14 Score=111.30 Aligned_cols=72 Identities=24% Similarity=0.438 Sum_probs=68.1
Q ss_pred cEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeee
Q 014384 151 KTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 222 (425)
Q Consensus 151 ~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 222 (425)
.+|||+|| |..+++++|+++|.+||.|..+.++ +|||||+|.+.++|.+|+..|||..|+|+.|.|.++..
T Consensus 2 ~~l~V~nl-p~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDL-NVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECC-CTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 58999999 8899999999999999999999986 67999999999999999999999999999999999987
Q ss_pred C
Q 014384 223 D 223 (425)
Q Consensus 223 ~ 223 (425)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 5
No 242
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.4e-14 Score=116.42 Aligned_cols=78 Identities=23% Similarity=0.448 Sum_probs=72.0
Q ss_pred CCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEE
Q 014384 146 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217 (425)
Q Consensus 146 ~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 217 (425)
...+.++|||+|| |..+++++|+++|.+||.|..|.++ +|||||+|.+.++|.+|+..|||..|+|+.|.|
T Consensus 19 ~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 19 RSVEGWILFVTGV-HEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp CBTTBEEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 3456789999999 8899999999999999999999996 579999999999999999999999999999999
Q ss_pred EEeeeCC
Q 014384 218 EYAVRDD 224 (425)
Q Consensus 218 ~~a~~~~ 224 (425)
.++..+.
T Consensus 98 ~~a~~~~ 104 (106)
T 1p27_B 98 DWCFVRG 104 (106)
T ss_dssp EESEESS
T ss_pred EeecCCC
Confidence 9998753
No 243
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.56 E-value=1e-14 Score=113.94 Aligned_cols=78 Identities=26% Similarity=0.388 Sum_probs=72.0
Q ss_pred CCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEE
Q 014384 146 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 219 (425)
Q Consensus 146 ~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 219 (425)
...+.++|||+|| |..+++++|+++|.+||.|..|.+. +|||||+|.+.++|.+|++.||+..|+|+.|.|.+
T Consensus 4 ~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 4 GSSGACQIFVRNL-PFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSSCCEEEECSC-CTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3456789999999 8899999999999999999999986 58999999999999999999999999999999999
Q ss_pred eeeCC
Q 014384 220 AVRDD 224 (425)
Q Consensus 220 a~~~~ 224 (425)
+....
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 98754
No 244
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.56 E-value=1e-14 Score=119.07 Aligned_cols=80 Identities=21% Similarity=0.431 Sum_probs=72.5
Q ss_pred CCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEE
Q 014384 144 STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVI 215 (425)
Q Consensus 144 ~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 215 (425)
.....+.++|||+|| |..+++++|+++|.+||.|..|.|. +|||||+|.+.++|.+|++.||+..|+|+.|
T Consensus 19 ~~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 97 (115)
T 2cpz_A 19 QKEGPEGANLFIYHL-PQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRL 97 (115)
T ss_dssp CCCCSTTCCEEEESC-CSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CcCCCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 344556789999999 8899999999999999999999885 4699999999999999999999999999999
Q ss_pred EEEEeeeCC
Q 014384 216 SVEYAVRDD 224 (425)
Q Consensus 216 ~v~~a~~~~ 224 (425)
.|.|+..+.
T Consensus 98 ~V~~a~~~~ 106 (115)
T 2cpz_A 98 KVQLKRSKN 106 (115)
T ss_dssp EEECCCCSC
T ss_pred EEEEcCCCC
Confidence 999998764
No 245
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=2.6e-14 Score=114.90 Aligned_cols=81 Identities=25% Similarity=0.554 Sum_probs=73.5
Q ss_pred CCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe---------ccEEEEEEcCHHHHHHHHHHc-CCCccCCe
Q 014384 144 STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR---------RNFAFVQYEVQEDATRALDAT-NMSKLTDR 213 (425)
Q Consensus 144 ~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~---------~g~afV~f~~~~~A~~A~~~l-~g~~~~g~ 213 (425)
.....+.++|||+|| |..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|.+|++.| |+..|.|+
T Consensus 9 ~~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~ 87 (107)
T 2cph_A 9 VPKKQTTSKILVRNI-PFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 87 (107)
T ss_dssp SCCSSCCCCEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred cccCCCCCEEEEeCC-CCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence 344567799999999 8899999999999999999999984 469999999999999999999 99999999
Q ss_pred EEEEEEeeeCCC
Q 014384 214 VISVEYAVRDDD 225 (425)
Q Consensus 214 ~i~v~~a~~~~~ 225 (425)
.|.|.++..+..
T Consensus 88 ~l~v~~a~~~~~ 99 (107)
T 2cph_A 88 RLVLEWADSEVT 99 (107)
T ss_dssp BCEEEECCCCCC
T ss_pred EEEEEeCCCCCC
Confidence 999999988643
No 246
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.56 E-value=1.2e-15 Score=123.04 Aligned_cols=76 Identities=18% Similarity=0.191 Sum_probs=68.7
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEe-------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGK---VDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRR 119 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~---V~~v~i~-------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~ 119 (425)
......+|||+|||+++|+++|.++|..||. |..|.|. +|||||+|.+.++|++||. ||+..| .|+.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~--~gr~ 83 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYM--GQRY 83 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCS--SSSC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCccee--CCeE
Confidence 4466789999999999999999999999998 8888883 7899999999999999997 999999 7999
Q ss_pred EEEEEeccc
Q 014384 120 LRVEWTKHE 128 (425)
Q Consensus 120 l~V~~a~~~ 128 (425)
|.|.++...
T Consensus 84 i~V~~a~~~ 92 (107)
T 2lmi_A 84 VEVYEINNE 92 (107)
T ss_dssp CCCEECCHH
T ss_pred EEEEECCHH
Confidence 999988653
No 247
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.56 E-value=9.8e-15 Score=115.10 Aligned_cols=75 Identities=20% Similarity=0.467 Sum_probs=70.1
Q ss_pred CCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEe
Q 014384 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220 (425)
Q Consensus 149 ~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 220 (425)
|.++|||+|| |..+++++|+++|.+||.|..|.+. +|||||+|.+.++|.+|++.|||..|+|+.|.|.++
T Consensus 1 P~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 1 PSRVVYLGSI-PYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp CCSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 4689999999 8899999999999999999999995 579999999999999999999999999999999999
Q ss_pred eeCC
Q 014384 221 VRDD 224 (425)
Q Consensus 221 ~~~~ 224 (425)
..+.
T Consensus 80 ~~~~ 83 (96)
T 2x1f_A 80 SNSD 83 (96)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 8753
No 248
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.4e-14 Score=111.43 Aligned_cols=75 Identities=23% Similarity=0.413 Sum_probs=69.5
Q ss_pred CCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--ccEEEEEEcCHHHHHHHHHHc-CCCccCCeEEEEEEee
Q 014384 146 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDAT-NMSKLTDRVISVEYAV 221 (425)
Q Consensus 146 ~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--~g~afV~f~~~~~A~~A~~~l-~g~~~~g~~i~v~~a~ 221 (425)
...+..+|||+|| |..+++++|+++|.+||.|..|.+. +|||||+|.+.++|.+|+..| ++..++|+.|.|+|++
T Consensus 8 ~~~~~~~l~V~~l-~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 8 EDKTITTLYVGGL-GDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SCSSCCCEEEECC-TTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCccEEEEcCC-CCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 3466789999999 7889999999999999999999997 589999999999999999999 9999999999999974
No 249
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.56 E-value=1.4e-14 Score=116.51 Aligned_cols=76 Identities=20% Similarity=0.349 Sum_probs=70.9
Q ss_pred CCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe-------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEE
Q 014384 145 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 217 (425)
....+..+|||+|| |..+++++|+++|.+||.|..|.|. +|||||+|.+.++|.+|++.||+..|.|+.|.|
T Consensus 24 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 24 AGVETGGKLLVSNL-DFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCCSEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 44567899999999 8899999999999999999999986 679999999999999999999999999999999
Q ss_pred EEee
Q 014384 218 EYAV 221 (425)
Q Consensus 218 ~~a~ 221 (425)
.++.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9985
No 250
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.56 E-value=3.6e-14 Score=119.76 Aligned_cols=79 Identities=25% Similarity=0.410 Sum_probs=72.6
Q ss_pred CCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEE
Q 014384 145 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 216 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 216 (425)
....+.++|||+|| +..+++++|+++|+.||.|..|.|. +|||||+|.+.++|.+|++.||+..|.|+.|.
T Consensus 37 ~~~~~~~~l~V~nL-p~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 37 PEPDVLRNLMVNYI-PTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp CCTTTTSEEEEESC-STTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 44566789999999 8899999999999999999999985 67999999999999999999999999999999
Q ss_pred EEEeeeCC
Q 014384 217 VEYAVRDD 224 (425)
Q Consensus 217 v~~a~~~~ 224 (425)
|.++....
T Consensus 116 v~~a~~~~ 123 (139)
T 1u6f_A 116 VALAASGH 123 (139)
T ss_dssp EEESSCCC
T ss_pred EEECCCCC
Confidence 99998754
No 251
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.56 E-value=1.4e-14 Score=117.11 Aligned_cols=79 Identities=22% Similarity=0.437 Sum_probs=72.8
Q ss_pred CCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEE
Q 014384 145 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 216 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 216 (425)
....+.++|||+|| |..+++++|+++|.+||.|..|.++ +|||||+|.+.++|.+|+..|||..|+|+.|.
T Consensus 21 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 99 (110)
T 1oo0_B 21 QRSVEGWILFVTSI-HEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 99 (110)
T ss_dssp CCBTTBEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 34566789999999 8899999999999999999999995 58999999999999999999999999999999
Q ss_pred EEEeeeCC
Q 014384 217 VEYAVRDD 224 (425)
Q Consensus 217 v~~a~~~~ 224 (425)
|.++..+.
T Consensus 100 V~~a~~~~ 107 (110)
T 1oo0_B 100 VDWCFVKG 107 (110)
T ss_dssp EEESEESS
T ss_pred EEEcccCC
Confidence 99998864
No 252
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=7e-15 Score=115.19 Aligned_cols=77 Identities=22% Similarity=0.380 Sum_probs=69.2
Q ss_pred CCCCcEEEEEcCCCCCCCHHHHHhhhccCCc-EEEEEE-eccEEEEEEcCHHHHHHHHHHcCC-CccCCeEEEEEEeeeC
Q 014384 147 TRPSKTLFVINFDPYHTRTRDLERHFEPYGK-IISVRI-RRNFAFVQYEVQEDATRALDATNM-SKLTDRVISVEYAVRD 223 (425)
Q Consensus 147 ~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~-v~~v~~-~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~i~v~~a~~~ 223 (425)
..+.++|||+|| |..+++++|+++|.+||. |..+.+ .+|||||+|.+.++|.+|++.||| ..|+|+.|.|.++..+
T Consensus 5 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 5 SSGMNKLYIGNL-SPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp CCCCCCEEEECC-CTTCCHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence 456789999999 889999999999999999 665555 489999999999999999999999 9999999999999875
Q ss_pred C
Q 014384 224 D 224 (425)
Q Consensus 224 ~ 224 (425)
.
T Consensus 84 ~ 84 (93)
T 2cqh_A 84 K 84 (93)
T ss_dssp C
T ss_pred c
Confidence 3
No 253
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.4e-14 Score=117.01 Aligned_cols=77 Identities=17% Similarity=0.414 Sum_probs=72.0
Q ss_pred CCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeCC
Q 014384 147 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDD 224 (425)
Q Consensus 147 ~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~ 224 (425)
..+.++|||+|| |..+++++|+++|.+||.|..|.|. +|||||+|.+.++|.+|+..|||..|+|+.|.|.|+....
T Consensus 22 ~~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 22 SPKNCTVYCGGI-ASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp CSSCCEEEEECC-SSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCC
Confidence 456789999999 7899999999999999999999997 6899999999999999999999999999999999998864
No 254
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.56 E-value=3.6e-14 Score=113.38 Aligned_cols=78 Identities=28% Similarity=0.466 Sum_probs=70.5
Q ss_pred CCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEE
Q 014384 144 STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVI 215 (425)
Q Consensus 144 ~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 215 (425)
.....+.++|||+|| |..+++++|+++|.+|| |..|.|+ +|||||+|.+.++|.+|+ .||+..|+|+.|
T Consensus 9 ~~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 85 (103)
T 2dng_A 9 ELPTEPPYTAYVGNL-PFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSL 85 (103)
T ss_dssp CCCSSSCEEEEEESC-CTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCCCCCeEEEEeCC-CCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEE
Confidence 344566799999999 89999999999999997 9999985 569999999999999999 899999999999
Q ss_pred EEEEeeeCC
Q 014384 216 SVEYAVRDD 224 (425)
Q Consensus 216 ~v~~a~~~~ 224 (425)
.|.++....
T Consensus 86 ~V~~a~~~~ 94 (103)
T 2dng_A 86 RVDIAEGRK 94 (103)
T ss_dssp EEEECCCCC
T ss_pred EEEEecCCC
Confidence 999998754
No 255
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=7.5e-14 Score=113.58 Aligned_cols=78 Identities=27% Similarity=0.364 Sum_probs=71.7
Q ss_pred CCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe-------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEE
Q 014384 145 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 217 (425)
....+.++|||+|| |..+++++|+++|.+||.|..|.|. ++||||+|.+.++|.+|++.||+..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nl-p~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 10 QAGRLGSTVFVANL-DYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CCCCCCSCEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 34566789999999 8899999999999999999999986 479999999999999999999999999999999
Q ss_pred EEeeeC
Q 014384 218 EYAVRD 223 (425)
Q Consensus 218 ~~a~~~ 223 (425)
.++...
T Consensus 89 ~~a~~~ 94 (114)
T 2do0_A 89 KMDERA 94 (114)
T ss_dssp EECSCC
T ss_pred EEcccC
Confidence 998764
No 256
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.55 E-value=1.2e-14 Score=137.58 Aligned_cols=72 Identities=19% Similarity=0.325 Sum_probs=68.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe---CCEEEEEEcCHHHHHHHHHhcCCCeecCC-CcEEEEEEec
Q 014384 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK---SGFAFIYMDDERDAEDAIRGLDRTEFGRK-GRRLRVEWTK 126 (425)
Q Consensus 53 ~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~---kg~aFV~F~~~~~A~~A~~~lng~~ig~~-gr~l~V~~a~ 126 (425)
..++|||+||+..+|+++|.++|++||.|..|.|. +|||||+|.+.++|.+|+..|||..| . |+.|.|.|++
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~~g~~l~v~~ak 281 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKI--TQNNAMKISFAK 281 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEe--CCCCEEEEEEec
Confidence 46889999999999999999999999999999994 59999999999999999999999999 6 9999999986
No 257
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.55 E-value=3.2e-15 Score=119.30 Aligned_cols=74 Identities=20% Similarity=0.556 Sum_probs=68.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEE
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 124 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~-------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~ 124 (425)
...++|||+|||+.+|+++|.++|++||.|..|.|. +|||||+|.+.++|++|+. ++..| +|+.|.|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~--~g~~l~v~~ 82 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINF--HGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEE--TTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeE--CCEEEEEEE
Confidence 456899999999999999999999999999999983 6999999999999999996 99999 899999999
Q ss_pred ecccc
Q 014384 125 TKHER 129 (425)
Q Consensus 125 a~~~~ 129 (425)
+....
T Consensus 83 a~~~~ 87 (102)
T 2xs2_A 83 AIRKQ 87 (102)
T ss_dssp EEECC
T ss_pred CCcCc
Confidence 97654
No 258
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=2.4e-14 Score=116.06 Aligned_cols=80 Identities=24% Similarity=0.338 Sum_probs=72.6
Q ss_pred CCCCCCCcEEEEEcCCCCCCCHHHHH---hhhccCCcEEEEEEec-----------cEEEEEEcCHHHHHHHHHHcCCCc
Q 014384 144 STNTRPSKTLFVINFDPYHTRTRDLE---RHFEPYGKIISVRIRR-----------NFAFVQYEVQEDATRALDATNMSK 209 (425)
Q Consensus 144 ~~~~~~~~~l~V~nl~p~~~~~~~L~---~~f~~~G~v~~v~~~~-----------g~afV~f~~~~~A~~A~~~l~g~~ 209 (425)
.......++|||+|| |..+++++|. ++|.+||.|..|.|+. |||||+|.+.++|.+|++.|||..
T Consensus 9 ~~r~~~~~~l~V~nL-p~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~ 87 (111)
T 2cpi_A 9 SVRVVQKNLVFVVGL-SQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV 87 (111)
T ss_dssp CCCCCCSSCEEEEEE-CTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred cccccCCCEEEEECC-CCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCE
Confidence 344566789999999 8899999999 9999999999999962 699999999999999999999999
Q ss_pred cCCeEEEEEEeeeCC
Q 014384 210 LTDRVISVEYAVRDD 224 (425)
Q Consensus 210 ~~g~~i~v~~a~~~~ 224 (425)
|+|+.|.|.+|..+.
T Consensus 88 ~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 88 VDGRTLKASLGTTKY 102 (111)
T ss_dssp ETTEEEEEESCCCCS
T ss_pred ECCEEEEEEeccccc
Confidence 999999999998864
No 259
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.55 E-value=2.1e-14 Score=113.85 Aligned_cols=78 Identities=18% Similarity=0.270 Sum_probs=70.8
Q ss_pred CCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEE--------EEEe--------ccEEEEEEcCHHHHHHHHHHcC
Q 014384 143 PSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIIS--------VRIR--------RNFAFVQYEVQEDATRALDATN 206 (425)
Q Consensus 143 ~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~--------v~~~--------~g~afV~f~~~~~A~~A~~~l~ 206 (425)
......+.++|||+|| |..+++++|+++|.+||.|.. |.+. +|||||+|.+.++|.+|++.||
T Consensus 6 ~~~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~ 84 (99)
T 2la6_A 6 HHHSHSDNNTIFVQGL-GENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD 84 (99)
T ss_dssp SCCSCCCCSEEEEECC-CSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHT
T ss_pred CCCCCCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 3445677899999999 889999999999999999998 8774 5799999999999999999999
Q ss_pred CCccCCeEEEEEEee
Q 014384 207 MSKLTDRVISVEYAV 221 (425)
Q Consensus 207 g~~~~g~~i~v~~a~ 221 (425)
|..|+|+.|.|++|+
T Consensus 85 g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 85 GKEFSGNPIKVSFAT 99 (99)
T ss_dssp TCBSSSSBCEEEECC
T ss_pred CCEeCCcEEEEEecC
Confidence 999999999999874
No 260
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=5.6e-15 Score=114.56 Aligned_cols=74 Identities=22% Similarity=0.358 Sum_probs=63.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe---CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEeccc
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK---SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHE 128 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~---kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~ 128 (425)
...++|||+|||+++|+++|.++|++||+|..|.|. +|||||+|.+.++|++| ++..+.+.|+.|.|.++...
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~----~~~~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSL----CGEDLIIKGISVHISNAEPK 78 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHT----TTCEEEETTEEEEEECCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHH----hcCCceeCCEEEEEEecCCC
Confidence 457899999999999999999999999999999994 89999999999999754 44444338999999998765
Q ss_pred c
Q 014384 129 R 129 (425)
Q Consensus 129 ~ 129 (425)
.
T Consensus 79 ~ 79 (88)
T 1wf0_A 79 H 79 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 261
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.1e-14 Score=116.76 Aligned_cols=80 Identities=18% Similarity=0.232 Sum_probs=72.1
Q ss_pred CCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEE--------EEEEe--------ccEEEEEEcCHHHHHHHHHHcCCC
Q 014384 145 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKII--------SVRIR--------RNFAFVQYEVQEDATRALDATNMS 208 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~--------~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~ 208 (425)
....+.++|||+|| |..+++++|+++|.+||.|. .|.|. +|||||+|.+.++|.+|++.||+.
T Consensus 10 ~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 10 DEDSDNSAIYVQGL-NDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCEEEEECC-CTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred ccCCCCCEEEEcCC-CCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 44567899999999 89999999999999999998 57774 579999999999999999999999
Q ss_pred ccCCeEEEEEEeeeCCC
Q 014384 209 KLTDRVISVEYAVRDDD 225 (425)
Q Consensus 209 ~~~g~~i~v~~a~~~~~ 225 (425)
.|.|+.|.|.++.....
T Consensus 89 ~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 89 DFQGSKLKVSLARKKPP 105 (113)
T ss_dssp EETTEECEEECSSCCCC
T ss_pred ccCCCEEEEEECCCCCC
Confidence 99999999999988643
No 262
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.55 E-value=2.2e-14 Score=115.22 Aligned_cols=80 Identities=28% Similarity=0.412 Sum_probs=72.4
Q ss_pred CCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCcc---CCe
Q 014384 145 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKL---TDR 213 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~---~g~ 213 (425)
....+..+|||+|| |..+++++|+++|++||.|..|.|+ +|||||+|.+.++|.+|++.||+..+ .|+
T Consensus 8 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 8 MKDHDAIKLFIGQI-PRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp CCCTTCEEEEEESC-CTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 34566789999999 8899999999999999999999985 47999999999999999999999988 899
Q ss_pred EEEEEEeeeCCC
Q 014384 214 VISVEYAVRDDD 225 (425)
Q Consensus 214 ~i~v~~a~~~~~ 225 (425)
.|.|.++..+..
T Consensus 87 ~l~v~~a~~~~~ 98 (106)
T 2dgp_A 87 PIQVKPADSESR 98 (106)
T ss_dssp CCEEEECCCCSC
T ss_pred eEEEEECCcccc
Confidence 999999987643
No 263
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.4e-14 Score=117.54 Aligned_cols=74 Identities=19% Similarity=0.279 Sum_probs=69.6
Q ss_pred CCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeC
Q 014384 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 223 (425)
Q Consensus 149 ~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 223 (425)
..++|||+|| |..+++++|+++|.+||.|..|.|+ ++||||+|.+.++|..|++.|||..|+|+.|.|+|+...
T Consensus 9 ~~~~l~V~nL-p~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 9 SKTVILAKNL-PAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 3579999999 8899999999999999999999995 789999999999999999999999999999999999874
No 264
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.1e-14 Score=117.65 Aligned_cols=79 Identities=34% Similarity=0.541 Sum_probs=72.7
Q ss_pred CCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEE
Q 014384 144 STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217 (425)
Q Consensus 144 ~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 217 (425)
.....+.++|||+|| +..+++++|+++|++||.|..|.+. +|||||+|.+.++|.+|++.|||..|+|+.|.|
T Consensus 23 ~~~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 23 TENKSQPKRLHVSNI-PFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp CSCTTCCCEEEEESC-CTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCCCCCEEEEECC-CCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344567789999999 8899999999999999999999996 789999999999999999999999999999999
Q ss_pred EEeeeC
Q 014384 218 EYAVRD 223 (425)
Q Consensus 218 ~~a~~~ 223 (425)
.++..+
T Consensus 102 ~~a~~~ 107 (109)
T 2err_A 102 NNATAR 107 (109)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 998764
No 265
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=7.2e-14 Score=110.31 Aligned_cols=77 Identities=30% Similarity=0.456 Sum_probs=70.2
Q ss_pred CCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeee
Q 014384 145 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 222 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 222 (425)
....+.++|||+|| .+++++|+++|.+||.|..|.|. +|||||+|.+.++|.+|+..||+..|+|+.|.|.++..
T Consensus 10 ~~~~~~~~l~V~n~---~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE---DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp CCCCCCSEEEEECS---SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCCCCCCEEEEcCC---CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 34556789999997 57899999999999999999996 78999999999999999999999999999999999977
Q ss_pred CC
Q 014384 223 DD 224 (425)
Q Consensus 223 ~~ 224 (425)
+.
T Consensus 87 ~~ 88 (97)
T 1x5p_A 87 QP 88 (97)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 266
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2e-14 Score=113.51 Aligned_cols=77 Identities=23% Similarity=0.386 Sum_probs=69.5
Q ss_pred CCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe----ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEe
Q 014384 145 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR----RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 220 (425)
......++|||+|| |..+++++|+++|.+||.|. +.+. +|||||+|.+.++|.+|++.|||..|+|+.|.|.++
T Consensus 14 ~~~~~~~~l~V~nL-~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 14 EGAPLAADVYVGNL-PRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp SSSCCCCEEEEECC-CTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCCCCEEEEeCC-CCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34556789999999 88999999999999999986 5554 789999999999999999999999999999999999
Q ss_pred eeC
Q 014384 221 VRD 223 (425)
Q Consensus 221 ~~~ 223 (425)
..+
T Consensus 92 ~~~ 94 (97)
T 2e5j_A 92 RQQ 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 875
No 267
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=3.1e-14 Score=113.28 Aligned_cols=78 Identities=27% Similarity=0.377 Sum_probs=69.3
Q ss_pred CCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEE----eccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEee
Q 014384 146 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI----RRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221 (425)
Q Consensus 146 ~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 221 (425)
...+.++|||+|| |..+++++|+++|.+||.|..+.. .+|||||+|.+.++|.+|++.||+..|.|+.|.|.++.
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 11 WSGESKTLVLSNL-SYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CSCCCSEEEEESC-CTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 4567899999999 888999999999999999844333 36899999999999999999999999999999999998
Q ss_pred eCC
Q 014384 222 RDD 224 (425)
Q Consensus 222 ~~~ 224 (425)
.+.
T Consensus 90 ~~~ 92 (101)
T 2fc9_A 90 PRG 92 (101)
T ss_dssp SCC
T ss_pred CCC
Confidence 753
No 268
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=6.9e-14 Score=114.22 Aligned_cols=79 Identities=28% Similarity=0.406 Sum_probs=71.6
Q ss_pred CCCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeE
Q 014384 143 PSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRV 214 (425)
Q Consensus 143 ~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 214 (425)
......+.++|||+|| |..+++++|+++|.+||.|..|.|+ ++||||+|.+.++|.+|++.|++ .|.|+.
T Consensus 10 ~~~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~ 87 (116)
T 2cqd_A 10 GSQKDTTFTKIFVGGL-PYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRK 87 (116)
T ss_dssp CCCCSCSSSEEEEECC-CSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEE
T ss_pred CCcCCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEE
Confidence 3445667899999999 8899999999999999999999995 46999999999999999999998 899999
Q ss_pred EEEEEeeeC
Q 014384 215 ISVEYAVRD 223 (425)
Q Consensus 215 i~v~~a~~~ 223 (425)
|.|.++...
T Consensus 88 l~V~~a~~~ 96 (116)
T 2cqd_A 88 ANVNLAYLG 96 (116)
T ss_dssp CEEEESTTT
T ss_pred EEEEEcccC
Confidence 999999764
No 269
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.54 E-value=3e-14 Score=114.98 Aligned_cols=78 Identities=23% Similarity=0.418 Sum_probs=71.5
Q ss_pred CCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEE
Q 014384 145 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 216 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 216 (425)
....+.++|||+|| |..+++++|+++|++||.|..|.++ +|||||+|.+.++|..|++.|||..|+|+.|.
T Consensus 21 ~~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 21 KGSAGPMRLYVGSL-HFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CSCSSCEEEEEECC-CSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34556789999999 7889999999999999999999985 57999999999999999999999999999999
Q ss_pred EEEeeeC
Q 014384 217 VEYAVRD 223 (425)
Q Consensus 217 v~~a~~~ 223 (425)
|.++..+
T Consensus 100 V~~a~~k 106 (108)
T 2jrs_A 100 VGHVTER 106 (108)
T ss_dssp EECSCSS
T ss_pred EEEcccC
Confidence 9998765
No 270
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.54 E-value=1.5e-14 Score=113.64 Aligned_cols=77 Identities=26% Similarity=0.324 Sum_probs=70.3
Q ss_pred CCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe-------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEE
Q 014384 145 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 217 (425)
....+..+|||+|| |..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|.+|++.||+..|+|+.|.|
T Consensus 11 ~~~~~~~~l~v~nl-p~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 11 AQEEADRTVFVGNL-EARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp -CTTGGGEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 34566789999999 7889999999999999999999996 579999999999999999999999999999999
Q ss_pred EEeee
Q 014384 218 EYAVR 222 (425)
Q Consensus 218 ~~a~~ 222 (425)
.++..
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 99864
No 271
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=9.6e-15 Score=116.27 Aligned_cols=73 Identities=27% Similarity=0.383 Sum_probs=68.8
Q ss_pred cEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe---ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeCC
Q 014384 151 KTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR---RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDD 224 (425)
Q Consensus 151 ~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~ 224 (425)
++|||+|| |..+++++|+++|++||.|..|.+. +|||||+|.+.++|.+|++.||+..|+|+.|.|.++....
T Consensus 1 ~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNL-GTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECC-CSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 48999999 8899999999999999999999995 6899999999999999999999999999999999998864
No 272
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2.2e-14 Score=114.73 Aligned_cols=79 Identities=18% Similarity=0.299 Sum_probs=72.0
Q ss_pred CCCCCcEEEEEcCCCCCCCHHHHHhhhcc-CCcEEEEEEe-------ccEEEEEEcCHHHHHHHHHHcCCCc-cCCeEEE
Q 014384 146 NTRPSKTLFVINFDPYHTRTRDLERHFEP-YGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSK-LTDRVIS 216 (425)
Q Consensus 146 ~~~~~~~l~V~nl~p~~~~~~~L~~~f~~-~G~v~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~-~~g~~i~ 216 (425)
...+..+|||+|| |..+++++|+++|.+ ||.|..|.|+ +|||||+|.+.++|.+|++.||+.. |+|+.|.
T Consensus 5 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDL-TPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECC-CTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3456789999999 889999999999999 9999999995 6799999999999999999999999 9999999
Q ss_pred EEEeeeCCC
Q 014384 217 VEYAVRDDD 225 (425)
Q Consensus 217 v~~a~~~~~ 225 (425)
|.++.....
T Consensus 84 v~~a~~~~~ 92 (104)
T 2dhg_A 84 LSVAIPKAS 92 (104)
T ss_dssp CCBCCCCCS
T ss_pred EEEccCCCc
Confidence 999977543
No 273
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=2.2e-14 Score=118.96 Aligned_cols=77 Identities=16% Similarity=0.290 Sum_probs=69.9
Q ss_pred CCCCCcEEEEEcCCCCCCCHHHHH----hhhccCCcEEEEEEe-----ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEE
Q 014384 146 NTRPSKTLFVINFDPYHTRTRDLE----RHFEPYGKIISVRIR-----RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 216 (425)
Q Consensus 146 ~~~~~~~l~V~nl~p~~~~~~~L~----~~f~~~G~v~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 216 (425)
...+.++|||+|| +..+++++|+ ++|++||.|..|.+. +|||||+|.+.++|..|+..|||..|.|+.|.
T Consensus 25 ~~~p~~~LfV~nL-~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 25 HTEPSQVVLITNI-NPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp CCSCCSEEEEESC-CTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 3566889999999 7888898876 699999999999885 68999999999999999999999999999999
Q ss_pred EEEeeeC
Q 014384 217 VEYAVRD 223 (425)
Q Consensus 217 v~~a~~~ 223 (425)
|.|+..+
T Consensus 104 V~~a~~~ 110 (127)
T 2a3j_A 104 ITFSETP 110 (127)
T ss_dssp EEECCCC
T ss_pred EEEccCc
Confidence 9999875
No 274
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.53 E-value=2.2e-14 Score=113.13 Aligned_cols=78 Identities=27% Similarity=0.502 Sum_probs=71.3
Q ss_pred CCCCCcEEEEEcCCCCCCCHHHHH----hhhccCCcEEEEEEe-----ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEE
Q 014384 146 NTRPSKTLFVINFDPYHTRTRDLE----RHFEPYGKIISVRIR-----RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 216 (425)
Q Consensus 146 ~~~~~~~l~V~nl~p~~~~~~~L~----~~f~~~G~v~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 216 (425)
...+.++|||+|| |..+++++|+ ++|.+||.|..|.+. +|||||+|.+.++|..|++.|||..|+|+.|.
T Consensus 4 ~~~~~~~l~V~nL-p~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 4 ETRPNHTIYINNL-NEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp --CCCSEEEEESC-CTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 3467799999999 8899999999 999999999999986 68999999999999999999999999999999
Q ss_pred EEEeeeCC
Q 014384 217 VEYAVRDD 224 (425)
Q Consensus 217 v~~a~~~~ 224 (425)
|.++..+.
T Consensus 83 v~~a~~~~ 90 (97)
T 1nu4_A 83 IQYAKTDS 90 (97)
T ss_dssp EEECSSCC
T ss_pred EEEccCCC
Confidence 99998753
No 275
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.53 E-value=9.6e-15 Score=114.83 Aligned_cols=75 Identities=25% Similarity=0.427 Sum_probs=66.3
Q ss_pred CCCCcEEEEEcCCCCCCCHHHHHhhhccCCc--EEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCc----cCC
Q 014384 147 TRPSKTLFVINFDPYHTRTRDLERHFEPYGK--IISVRIR--------RNFAFVQYEVQEDATRALDATNMSK----LTD 212 (425)
Q Consensus 147 ~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~--v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~----~~g 212 (425)
...-.+|||+|| |..+|+++|+++|++||. |..|.++ +|||||+|.+.++|.+|++.|||.. |+|
T Consensus 6 ~~~m~tlfV~nL-~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 6 HHHMDTIILRNI-APHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SCCCCEEEEESC-CTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred CCccCEEEEeCC-CCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 345579999999 789999999999999995 5677764 6799999999999999999999974 899
Q ss_pred eEEEEEEeee
Q 014384 213 RVISVEYAVR 222 (425)
Q Consensus 213 ~~i~v~~a~~ 222 (425)
+.|.|+||+.
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999874
No 276
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=8.1e-15 Score=120.84 Aligned_cols=74 Identities=14% Similarity=0.209 Sum_probs=65.5
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCe----eEEEE-------eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcE
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKV----DRVDM-------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRR 119 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V----~~v~i-------~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~ 119 (425)
.....+|||+|||+++|+++|+++|++||.| ..|.| ++|||||+|.+.++|++||.. |+..| .|+.
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l--~gR~ 96 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLL--GKRY 96 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEES--SSCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCee--CCeE
Confidence 4667899999999999999999999999975 57777 379999999999999999964 99988 7999
Q ss_pred EEEEEecc
Q 014384 120 LRVEWTKH 127 (425)
Q Consensus 120 l~V~~a~~ 127 (425)
|.|..+..
T Consensus 97 i~V~~a~~ 104 (123)
T 2dha_A 97 IELFRSTA 104 (123)
T ss_dssp ECCEEECH
T ss_pred EEEEECCH
Confidence 99988754
No 277
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=4.3e-14 Score=112.64 Aligned_cols=81 Identities=26% Similarity=0.440 Sum_probs=70.5
Q ss_pred CCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe-----ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEE
Q 014384 144 STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-----RNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218 (425)
Q Consensus 144 ~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 218 (425)
.....+.++|||+|| |..+++++|+++|.+|+.|..+... +|||||+|.+.++|.+|++.||+..|.|+.|.|.
T Consensus 9 ~~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 9 NARSQPSKTLFVKGL-SEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSSSCCCSSEEEECC-CTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCCEEEEeCC-CCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 345567899999999 8899999999999999766555442 5899999999999999999999999999999999
Q ss_pred EeeeCCC
Q 014384 219 YAVRDDD 225 (425)
Q Consensus 219 ~a~~~~~ 225 (425)
++..+..
T Consensus 88 ~a~~~~~ 94 (102)
T 2fc8_A 88 WAKPKGE 94 (102)
T ss_dssp ECCCCCS
T ss_pred EecCCCC
Confidence 9988643
No 278
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.53 E-value=3.5e-15 Score=116.58 Aligned_cols=74 Identities=24% Similarity=0.429 Sum_probs=66.6
Q ss_pred CcEEEEEcCCCCCCCHHHHHhhhccCC-cEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcC-CCccCCeEEEEEE
Q 014384 150 SKTLFVINFDPYHTRTRDLERHFEPYG-KIISVRIR--------RNFAFVQYEVQEDATRALDATN-MSKLTDRVISVEY 219 (425)
Q Consensus 150 ~~~l~V~nl~p~~~~~~~L~~~f~~~G-~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~i~v~~ 219 (425)
+++|||+|| |..+++++|+++|++|| .|..|.|+ +|||||+|.+.++|.+|++.|+ +..|+|+.|.|+|
T Consensus 1 S~~i~v~nL-p~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRML-PQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETC-CSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 368999999 89999999999999999 79998884 6899999999999999999874 5679999999999
Q ss_pred eeeCC
Q 014384 220 AVRDD 224 (425)
Q Consensus 220 a~~~~ 224 (425)
|.++.
T Consensus 80 a~~~~ 84 (91)
T 2lxi_A 80 SDPKP 84 (91)
T ss_dssp CCSCC
T ss_pred cCCCC
Confidence 98753
No 279
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.53 E-value=2.1e-14 Score=119.71 Aligned_cols=80 Identities=35% Similarity=0.519 Sum_probs=73.0
Q ss_pred CCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEE
Q 014384 144 STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVI 215 (425)
Q Consensus 144 ~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 215 (425)
.....+.++|||+|| |..+++++|+++|.+||.|..|.|. +|||||+|.+.++|.+|++.|||..|+|+.|
T Consensus 40 ~~~~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l 118 (129)
T 2kxn_B 40 RANPDPNCCLGVFGL-SLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 118 (129)
T ss_dssp SSCCCCSSCBCEETC-TTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 345567899999999 8899999999999999999999995 5799999999999999999999999999999
Q ss_pred EEEEeeeCC
Q 014384 216 SVEYAVRDD 224 (425)
Q Consensus 216 ~v~~a~~~~ 224 (425)
.|.|+..+.
T Consensus 119 ~V~~a~~~~ 127 (129)
T 2kxn_B 119 RVDFSITKR 127 (129)
T ss_dssp EESCCSSSS
T ss_pred EEEEecCCC
Confidence 999997753
No 280
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.53 E-value=1.4e-14 Score=132.95 Aligned_cols=75 Identities=23% Similarity=0.339 Sum_probs=70.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEE---eCCEEEEEEcCHHHHHHHHHhcCCCeecCC-CcEEEEEEec
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRYG-KVDRVDM---KSGFAFIYMDDERDAEDAIRGLDRTEFGRK-GRRLRVEWTK 126 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~G-~V~~v~i---~kg~aFV~F~~~~~A~~A~~~lng~~ig~~-gr~l~V~~a~ 126 (425)
.+.++|||+|||..+|+++|.++|.+|| +|..|.| .+|||||+|.+.++|.+|+..|||..| . |+.|.|.|++
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~~g~~l~v~~a~ 226 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDL--GENHHLRVSFSK 226 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBS--SSSCBCEEEECS
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCcc--CCCCeEEEEEec
Confidence 3468999999999999999999999999 9999999 589999999999999999999999999 6 9999999987
Q ss_pred cc
Q 014384 127 HE 128 (425)
Q Consensus 127 ~~ 128 (425)
..
T Consensus 227 ~~ 228 (229)
T 2adc_A 227 ST 228 (229)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 281
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.52 E-value=1.1e-14 Score=115.81 Aligned_cols=75 Identities=16% Similarity=0.235 Sum_probs=69.2
Q ss_pred CCCcEEEEEcCCCC------CCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCC-
Q 014384 148 RPSKTLFVINFDPY------HTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTD- 212 (425)
Q Consensus 148 ~~~~~l~V~nl~p~------~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g- 212 (425)
...++|||+|| |. .+++++|+++|++||.|..|.|+ +|||||+|.+.++|.+|++.|||..|.|
T Consensus 4 ~~~~~vfV~nL-p~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 4 GSDQYIVVNGA-PVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp CGGGEEEEESC-CCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CcCcEEEEeCC-CcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 34689999999 88 88899999999999999999985 6899999999999999999999999999
Q ss_pred eEEEEEEeeeC
Q 014384 213 RVISVEYAVRD 223 (425)
Q Consensus 213 ~~i~v~~a~~~ 223 (425)
+.|.|.++.+.
T Consensus 83 r~l~V~~a~~~ 93 (100)
T 3ns6_A 83 HRLFLYTMKDV 93 (100)
T ss_dssp CBCEEEESHHH
T ss_pred eEEEEEECchh
Confidence 99999998653
No 282
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.52 E-value=3.9e-14 Score=116.06 Aligned_cols=76 Identities=24% Similarity=0.450 Sum_probs=69.6
Q ss_pred CCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEE
Q 014384 145 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 216 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 216 (425)
....+.++|||+|| |..+++++|+++|.+||.|..|.|. +|||||+|.+.++|.+|++.|||..|+|+.|.
T Consensus 35 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 35 IEGPEGCNLFIYHL-PQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp CCCCCSEEEEEECS-CTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34566789999999 8899999999999999999999995 57999999999999999999999999999999
Q ss_pred EEEee
Q 014384 217 VEYAV 221 (425)
Q Consensus 217 v~~a~ 221 (425)
|+|++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99874
No 283
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.52 E-value=1.4e-14 Score=119.76 Aligned_cols=75 Identities=15% Similarity=0.211 Sum_probs=65.5
Q ss_pred hcCCCceEEEcCCCCCCCHHHHHHHHhhcCCee--EEEEe-------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEE
Q 014384 50 FEAMMRPIFCGNFEYDARQSDLERLFRRYGKVD--RVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRL 120 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~--~v~i~-------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l 120 (425)
......+|||+|||+++|+++|+++|+.| .|. .|.|. +|||||+|.+.++|++||. +++..| .|+.|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l--~gR~I 113 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERI--GHRYI 113 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCB--TTBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEE--CCEEE
Confidence 34567899999999999999999999999 566 78873 7999999999999999995 578888 79999
Q ss_pred EEEEeccc
Q 014384 121 RVEWTKHE 128 (425)
Q Consensus 121 ~V~~a~~~ 128 (425)
.|.++...
T Consensus 114 ~V~~a~~~ 121 (126)
T 2hgm_A 114 EVFKSSQE 121 (126)
T ss_dssp CCEEECHH
T ss_pred EEEECCHH
Confidence 99988643
No 284
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.52 E-value=1.4e-14 Score=132.60 Aligned_cols=80 Identities=20% Similarity=0.415 Sum_probs=70.0
Q ss_pred hcCCCceEEEcCCCCCC---------CHHHHHHHHhhcCCeeEEEE--eCCEEEEEEcCHHHHHHHHHhcCCCeecC---
Q 014384 50 FEAMMRPIFCGNFEYDA---------RQSDLERLFRRYGKVDRVDM--KSGFAFIYMDDERDAEDAIRGLDRTEFGR--- 115 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~---------t~~~L~~lF~~~G~V~~v~i--~kg~aFV~F~~~~~A~~A~~~lng~~ig~--- 115 (425)
.....++|||+||+..+ |+++|.++|++||+|+.|.| .+|||||+|.+.++|+.|+++|||..|.+
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 35567999999999998 79999999999999999998 48999999999999999999999998822
Q ss_pred -------CCcEEEEEEecccc
Q 014384 116 -------KGRRLRVEWTKHER 129 (425)
Q Consensus 116 -------~gr~l~V~~a~~~~ 129 (425)
.|+.|.|.||....
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp TTGGGGGGSCCCEEEECC---
T ss_pred ccccccCCCCEEEEEEccCCC
Confidence 58999999998654
No 285
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3.3e-14 Score=109.36 Aligned_cols=76 Identities=22% Similarity=0.371 Sum_probs=67.7
Q ss_pred CCCCcE-EEEEcCCCCCCCHHH----HHhhhccCC-cEEEEEEeccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEe
Q 014384 147 TRPSKT-LFVINFDPYHTRTRD----LERHFEPYG-KIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220 (425)
Q Consensus 147 ~~~~~~-l~V~nl~p~~~~~~~----L~~~f~~~G-~v~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 220 (425)
.+|..+ |||.|| |+.+++++ |.++|.+|| +|..|. .|+|||+|.+.++|..|++.|||..|.|+.|.|.||
T Consensus 5 ~~p~~T~lYV~NL-~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt--gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A 81 (96)
T 2diu_A 5 SSGCHTLLYVYNL-PANKDGKSVSNRLRRLSDNCGGKVLSIT--GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFT 81 (96)
T ss_dssp CCCSSEEEEEESC-CTTSCHHHHHHHHHHHHHTTTCCEEECC--TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESS
T ss_pred CCCcceEEEEeCC-CCcCCHHHHHHHHHHHHHHcCCeeEEEe--cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEec
Confidence 455666 899999 89999887 558999994 999994 499999999999999999999999999999999999
Q ss_pred eeCCC
Q 014384 221 VRDDD 225 (425)
Q Consensus 221 ~~~~~ 225 (425)
+...+
T Consensus 82 ~~~sd 86 (96)
T 2diu_A 82 PKNRE 86 (96)
T ss_dssp CCSCC
T ss_pred CCCcc
Confidence 98654
No 286
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.5e-14 Score=115.09 Aligned_cols=75 Identities=19% Similarity=0.333 Sum_probs=69.7
Q ss_pred CCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeee
Q 014384 147 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 222 (425)
Q Consensus 147 ~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 222 (425)
....++|||+|| +..+++++|+++|.+||.|..|.+. +|||||+|.+.++|..|+..|||..|+|+.|.|.|++.
T Consensus 24 ~~~~~~l~V~nl-p~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 24 PPRVTTAYIGNI-PHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp CSSCCEEEEESC-CTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCCEEEEcCC-CcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 345689999999 7899999999999999999999996 78999999999999999999999999999999999865
No 287
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.7e-14 Score=115.43 Aligned_cols=79 Identities=14% Similarity=0.224 Sum_probs=70.7
Q ss_pred CCCCCcEEEE--EcCCCCCCCHHHHHhhhccCCcEEEEEEe--ccEEEEEEcCHHHHHHHHHHcCCCcc-----CCeEEE
Q 014384 146 NTRPSKTLFV--INFDPYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDATNMSKL-----TDRVIS 216 (425)
Q Consensus 146 ~~~~~~~l~V--~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~-----~g~~i~ 216 (425)
...+..+||| +|| +..+++++|+++|++||.|..|.|+ +|||||+|.+.++|.+|++.|||..| .|.+|.
T Consensus 21 ~~~pt~~L~V~Ng~L-~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 21 VSYATQSLVVANGGL-GNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 99 (114)
T ss_dssp CSSCCSEEEEETCTG-GGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCCCEEEEECCCC-CCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEE
Confidence 3456789999 669 7899999999999999999999987 67999999999999999999999988 689999
Q ss_pred EEEeeeCCC
Q 014384 217 VEYAVRDDD 225 (425)
Q Consensus 217 v~~a~~~~~ 225 (425)
|.|+..-..
T Consensus 100 v~~a~~~p~ 108 (114)
T 2cq2_A 100 LNFVEKVQW 108 (114)
T ss_dssp EEEESCCCC
T ss_pred EEecccCcc
Confidence 999987543
No 288
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=4.8e-14 Score=114.95 Aligned_cols=79 Identities=27% Similarity=0.420 Sum_probs=70.8
Q ss_pred CCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcE----EEEEEe----ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEE
Q 014384 145 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKI----ISVRIR----RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 216 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v----~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 216 (425)
....+.++|||+|| |..+++++|+++|.+||.| ..+.+. +|||||+|.+.++|..|++.||+..|+|+.|.
T Consensus 20 ~~~~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 98 (115)
T 2cpx_A 20 NPGEPNKVLYLKNL-SPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILV 98 (115)
T ss_dssp CCCSCCSEEEEECC-CTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34457799999999 8899999999999999998 566654 68999999999999999999999999999999
Q ss_pred EEEeeeCC
Q 014384 217 VEYAVRDD 224 (425)
Q Consensus 217 v~~a~~~~ 224 (425)
|.++....
T Consensus 99 v~~a~~~~ 106 (115)
T 2cpx_A 99 IEFGKNKK 106 (115)
T ss_dssp EEECCCCS
T ss_pred EEEccCCC
Confidence 99998864
No 289
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3.2e-14 Score=114.04 Aligned_cols=80 Identities=21% Similarity=0.336 Sum_probs=72.2
Q ss_pred CCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEE
Q 014384 144 STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVI 215 (425)
Q Consensus 144 ~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 215 (425)
.....+.++|||+|| |..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|.+|++. ++..|+|+.|
T Consensus 10 ~~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l 87 (105)
T 2dh8_A 10 NSGADEIGKLFVGGL-DWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNI 87 (105)
T ss_dssp CCCSSSSSEECCBSC-CTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEE
T ss_pred cCCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEE
Confidence 345667899999999 8899999999999999999999985 36999999999999999998 9999999999
Q ss_pred EEEEeeeCCC
Q 014384 216 SVEYAVRDDD 225 (425)
Q Consensus 216 ~v~~a~~~~~ 225 (425)
.|.++..+..
T Consensus 88 ~V~~a~~~~~ 97 (105)
T 2dh8_A 88 DPKPCTPRGM 97 (105)
T ss_dssp BCCCSCCSSC
T ss_pred EEEEccCCCC
Confidence 9999987643
No 290
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.51 E-value=1.5e-14 Score=129.51 Aligned_cols=75 Identities=23% Similarity=0.339 Sum_probs=70.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEE---eCCEEEEEEcCHHHHHHHHHhcCCCeecCC-CcEEEEEEec
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRYG-KVDRVDM---KSGFAFIYMDDERDAEDAIRGLDRTEFGRK-GRRLRVEWTK 126 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~G-~V~~v~i---~kg~aFV~F~~~~~A~~A~~~lng~~ig~~-gr~l~V~~a~ 126 (425)
.+.++|||+|||..+|+++|.++|..|| .|..|.| .+|+|||+|.+.++|.+|+..|||..| . |+.|.|.|++
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~~g~~l~v~~a~ 195 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDL--GENHHLRVSFSK 195 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCC--SSCCSCCEEEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCcc--CCCCeEEEEeec
Confidence 3478999999999999999999999999 9999999 479999999999999999999999999 6 9999999987
Q ss_pred cc
Q 014384 127 HE 128 (425)
Q Consensus 127 ~~ 128 (425)
..
T Consensus 196 ~~ 197 (198)
T 1qm9_A 196 ST 197 (198)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 291
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.51 E-value=6.2e-14 Score=114.31 Aligned_cols=76 Identities=28% Similarity=0.466 Sum_probs=71.0
Q ss_pred CCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe-----ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEee
Q 014384 147 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-----RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221 (425)
Q Consensus 147 ~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 221 (425)
..+.++|||+|| |..+++++|+++|.+||.|..|.++ +|||||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 5 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 5 PEVNRILYIRNL-PYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp TTCCSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 456789999999 8899999999999999999999995 5799999999999999999999999999999999998
Q ss_pred eC
Q 014384 222 RD 223 (425)
Q Consensus 222 ~~ 223 (425)
..
T Consensus 84 ~~ 85 (115)
T 3lqv_A 84 AN 85 (115)
T ss_dssp HH
T ss_pred CC
Confidence 64
No 292
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=3.6e-14 Score=112.22 Aligned_cols=77 Identities=18% Similarity=0.212 Sum_probs=68.5
Q ss_pred CCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEE
Q 014384 146 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217 (425)
Q Consensus 146 ~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 217 (425)
.....++|||+|| |..+++++|+++|.+||.|..+.++ +|||||+|.+.++|.+|++.||+..|+|+.|.|
T Consensus 11 ~~~~~~~l~v~nL-p~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 89 (98)
T 2cqp_A 11 GKPGPTIIKVQNM-PFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (98)
T ss_dssp CCCSSEEEEEESC-CTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3456689999999 8999999999999999998755442 689999999999999999999999999999999
Q ss_pred EEeeeC
Q 014384 218 EYAVRD 223 (425)
Q Consensus 218 ~~a~~~ 223 (425)
+++...
T Consensus 90 ~~a~~~ 95 (98)
T 2cqp_A 90 VLGSGP 95 (98)
T ss_dssp EESSCS
T ss_pred EEcCCC
Confidence 998764
No 293
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.50 E-value=3.7e-14 Score=113.75 Aligned_cols=77 Identities=18% Similarity=0.257 Sum_probs=69.8
Q ss_pred CCCCCcEEEEEcCCCCCC------CHHHHHhhhccCCcEEEEEEe------ccEEEEEEcCHHHHHHHHHHcCCCccCCe
Q 014384 146 NTRPSKTLFVINFDPYHT------RTRDLERHFEPYGKIISVRIR------RNFAFVQYEVQEDATRALDATNMSKLTDR 213 (425)
Q Consensus 146 ~~~~~~~l~V~nl~p~~~------~~~~L~~~f~~~G~v~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 213 (425)
.....++|||+|| |..+ ++++|+++|.+||.|..|.|+ +|||||+|.+.++|.+|+..|||..|+|+
T Consensus 11 ~~~~~~~l~V~nL-p~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 11 ADGIDSVIVVDNV-PQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CCSCCSEEEEESC-CCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCCEEEEeCC-CcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3445689999999 7777 689999999999999999986 68999999999999999999999999998
Q ss_pred -EEEEEEeeeC
Q 014384 214 -VISVEYAVRD 223 (425)
Q Consensus 214 -~i~v~~a~~~ 223 (425)
.|.|.++...
T Consensus 90 ~~l~V~~a~~~ 100 (105)
T 2nlw_A 90 HTFRVNLFTDF 100 (105)
T ss_dssp CEEEEECSCCC
T ss_pred ceEEEEEcchH
Confidence 9999998754
No 294
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=3.2e-14 Score=112.73 Aligned_cols=77 Identities=19% Similarity=0.331 Sum_probs=70.4
Q ss_pred CCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEE-EEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeE--
Q 014384 146 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKII-SVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRV-- 214 (425)
Q Consensus 146 ~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~-~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-- 214 (425)
...+.++|||+|| |..+++++|+++|.+||.|. .|.++ +|||||+|.+.++|.+|++.|||..|.|+.
T Consensus 5 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 83 (99)
T 2div_A 5 SSGMAASLWMGDL-EPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPA 83 (99)
T ss_dssp CCSSSSEEEECSC-CTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSC
T ss_pred CCCCccEEEEeCC-CCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcc
Confidence 3456799999999 78899999999999999999 99885 479999999999999999999999999999
Q ss_pred --EEEEEeeeC
Q 014384 215 --ISVEYAVRD 223 (425)
Q Consensus 215 --i~v~~a~~~ 223 (425)
|.|.|+...
T Consensus 84 ~~l~v~~a~~~ 94 (99)
T 2div_A 84 KRFKLNYATYS 94 (99)
T ss_dssp EECCEEETTCC
T ss_pred eeEEEeecCCC
Confidence 999998764
No 295
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=4.7e-14 Score=112.72 Aligned_cols=73 Identities=16% Similarity=0.408 Sum_probs=67.8
Q ss_pred CCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe-------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEe
Q 014384 148 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220 (425)
Q Consensus 148 ~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 220 (425)
....+|||+|| |..+++++|+++|++||.|..|.|+ +|||||+|.+.++|.+|+. +++..|+|+.|.|.++
T Consensus 9 ~~~~~lfV~~L-p~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGF-PTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECC-CTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECC-CCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 45689999999 8899999999999999999999996 5899999999999999999 9999999999999987
Q ss_pred ee
Q 014384 221 VR 222 (425)
Q Consensus 221 ~~ 222 (425)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 54
No 296
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.49 E-value=1.1e-14 Score=113.38 Aligned_cols=73 Identities=18% Similarity=0.310 Sum_probs=62.9
Q ss_pred cEEEEEcCCCCCCCHHHHHhhhccCC--cEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEe
Q 014384 151 KTLFVINFDPYHTRTRDLERHFEPYG--KIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220 (425)
Q Consensus 151 ~~l~V~nl~p~~~~~~~L~~~f~~~G--~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 220 (425)
.+|||+|| +..+++++|+++|++|| .|..|.++ +|||||+|.+.++|.+|++.|||..|+|+.|.|.++
T Consensus 2 ~~l~V~nL-~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNL-TWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESC-CTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCC-CCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 47999999 88999999999999999 99999885 579999999999999999999999999999999998
Q ss_pred eeCC
Q 014384 221 VRDD 224 (425)
Q Consensus 221 ~~~~ 224 (425)
....
T Consensus 81 ~~~~ 84 (90)
T 3p5t_L 81 NKLE 84 (90)
T ss_dssp ----
T ss_pred CCCc
Confidence 8753
No 297
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2.2e-13 Score=108.70 Aligned_cols=78 Identities=18% Similarity=0.477 Sum_probs=69.3
Q ss_pred CCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEE
Q 014384 145 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 216 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 216 (425)
....+.++|||+|| |..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|.+|+. ++..|+|+.|.
T Consensus 10 ~~~~~~~~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~ 86 (103)
T 2cqg_A 10 RAVQKTSDLIVLGL-PWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCD 86 (103)
T ss_dssp CCCCCCCCEEEESC-CSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEE
T ss_pred CccCCCCEEEEEcC-CCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEE
Confidence 34566789999999 8999999999999999999999985 4699999999999999998 46789999999
Q ss_pred EEEeeeCCC
Q 014384 217 VEYAVRDDD 225 (425)
Q Consensus 217 v~~a~~~~~ 225 (425)
|.++..+..
T Consensus 87 v~~a~~~~~ 95 (103)
T 2cqg_A 87 CKLPNSKQS 95 (103)
T ss_dssp EECCCTTCC
T ss_pred EEecCCCCc
Confidence 999987643
No 298
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.4e-13 Score=111.66 Aligned_cols=78 Identities=19% Similarity=0.253 Sum_probs=68.9
Q ss_pred hcCCCceEEEcCCCCCCC-----------HHHHHHHHhhcCCeeEEEEe----CCEEEEEEcCHHHHHHHHHhcCCCeec
Q 014384 50 FEAMMRPIFCGNFEYDAR-----------QSDLERLFRRYGKVDRVDMK----SGFAFIYMDDERDAEDAIRGLDRTEFG 114 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~~t-----------~~~L~~lF~~~G~V~~v~i~----kg~aFV~F~~~~~A~~A~~~lng~~ig 114 (425)
.+.+.++|+|.||....+ +++|.++|++||+|..|.|. +|||||+|.+.++|.+|+..|||..|
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~- 89 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWF- 89 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEE-
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEE-
Confidence 456789999999954432 68999999999999999884 89999999999999999999999999
Q ss_pred CCCcEEEEEEecccc
Q 014384 115 RKGRRLRVEWTKHER 129 (425)
Q Consensus 115 ~~gr~l~V~~a~~~~ 129 (425)
+|+.|.|.|+....
T Consensus 90 -~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 90 -GGRQITAQAWDGTT 103 (112)
T ss_dssp -TTEECEEEECCSCC
T ss_pred -CCcEEEEEEeCCCC
Confidence 89999999997654
No 299
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.48 E-value=1.3e-13 Score=110.36 Aligned_cols=77 Identities=16% Similarity=0.219 Sum_probs=67.9
Q ss_pred hcCCCceEEEcCCCC-----CCCHHHHHHHHhhcCCeeEEEEe---------CCEEEEEEcCHHHHHHHHHhcCCCeecC
Q 014384 50 FEAMMRPIFCGNFEY-----DARQSDLERLFRRYGKVDRVDMK---------SGFAFIYMDDERDAEDAIRGLDRTEFGR 115 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~-----~~t~~~L~~lF~~~G~V~~v~i~---------kg~aFV~F~~~~~A~~A~~~lng~~ig~ 115 (425)
...++++|+|.||.. +.++++|+++|++||+|..|.|. +|||||+|.+.++|.+|+..|||..|
T Consensus 4 ~~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~-- 81 (105)
T 2pe8_A 4 GKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYF-- 81 (105)
T ss_dssp GGSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEE--
T ss_pred CCCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEE--
Confidence 346788999999963 23789999999999999999883 68999999999999999999999999
Q ss_pred CCcEEEEEEeccc
Q 014384 116 KGRRLRVEWTKHE 128 (425)
Q Consensus 116 ~gr~l~V~~a~~~ 128 (425)
+|+.|.|.++...
T Consensus 82 ~Gr~i~v~~a~~~ 94 (105)
T 2pe8_A 82 GGRVVKACFYNLD 94 (105)
T ss_dssp TTEECEEEECCHH
T ss_pred CCcEEEEEEcCHH
Confidence 8999999998754
No 300
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.48 E-value=1.4e-13 Score=106.29 Aligned_cols=73 Identities=26% Similarity=0.541 Sum_probs=66.3
Q ss_pred CCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEE
Q 014384 146 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217 (425)
Q Consensus 146 ~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 217 (425)
...+.++|||+|| |..+++++|+++|.+||.|..|.++ +|||||+|.+.++|.+|++ +++..|+|+.|.|
T Consensus 7 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v 84 (87)
T 3s7r_A 7 NEEDAGKMFVGGL-SWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDP 84 (87)
T ss_dssp CCSCTTEEEEECC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEE
Confidence 3456789999999 8899999999999999999999985 5799999999999999996 5888899999999
Q ss_pred EEe
Q 014384 218 EYA 220 (425)
Q Consensus 218 ~~a 220 (425)
.+|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 301
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.48 E-value=1.2e-13 Score=114.15 Aligned_cols=78 Identities=18% Similarity=0.325 Sum_probs=72.1
Q ss_pred CCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe-------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEE
Q 014384 145 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 217 (425)
....+.++|||+|| +..+++++|+++|.+||.|..|.|. +|||||+|.+.++|.+|++.|||..|+|+.|.|
T Consensus 30 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 30 EGVETGAKLLVSNL-DFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCCSSCEEEEEESC-CSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34567789999999 8899999999999999999999995 589999999999999999999999999999999
Q ss_pred EEeeeC
Q 014384 218 EYAVRD 223 (425)
Q Consensus 218 ~~a~~~ 223 (425)
.+|...
T Consensus 109 ~~a~~~ 114 (124)
T 2kt5_A 109 QLVASQ 114 (124)
T ss_dssp EEECCT
T ss_pred EEeCCC
Confidence 999875
No 302
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.48 E-value=8.4e-14 Score=107.90 Aligned_cols=72 Identities=26% Similarity=0.459 Sum_probs=67.1
Q ss_pred CcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEee
Q 014384 150 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221 (425)
Q Consensus 150 ~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 221 (425)
.++|||+|| |..+++++|+++|.+||.|..|.++ +|||||+|.+.++|.+|+ .||+..|.|+.|.|.++.
T Consensus 6 ~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 6 ARSIYVGNV-DYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HTEEEEESC-CTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 479999999 8899999999999999999999985 569999999999999999 999999999999999987
Q ss_pred eC
Q 014384 222 RD 223 (425)
Q Consensus 222 ~~ 223 (425)
..
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 303
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=4.5e-14 Score=112.89 Aligned_cols=76 Identities=28% Similarity=0.538 Sum_probs=70.0
Q ss_pred CCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEE
Q 014384 148 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 219 (425)
Q Consensus 148 ~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 219 (425)
.+.++|||+|| |..+++++|+++|.+||.|..|.+. +|||||+|.+.++|.+|++.|||..|+|+.|.|.+
T Consensus 6 ~~~~~l~V~nl-p~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 6 RSLRSVFVGNI-PYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHSCEEEESC-CTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCccEEEEeCC-CCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 34579999999 8899999999999999999999885 67999999999999999999999999999999999
Q ss_pred eeeCC
Q 014384 220 AVRDD 224 (425)
Q Consensus 220 a~~~~ 224 (425)
+....
T Consensus 85 a~~~~ 89 (104)
T 1p1t_A 85 AASEK 89 (104)
T ss_dssp TTCTT
T ss_pred CCCcc
Confidence 87753
No 304
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.7e-13 Score=106.80 Aligned_cols=75 Identities=20% Similarity=0.360 Sum_probs=68.9
Q ss_pred CCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe-------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEE
Q 014384 147 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 219 (425)
Q Consensus 147 ~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 219 (425)
.....+|||+|| |..+++++|+++|.+| .|..|.|+ +|||||+|.+.++|.+|+. ||+..|+|+.|.|.+
T Consensus 7 ~~~~~~l~v~nL-p~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGA-PFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECC-CSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECC-CCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 456789999999 8999999999999999 99999885 5699999999999999999 999999999999999
Q ss_pred eeeCC
Q 014384 220 AVRDD 224 (425)
Q Consensus 220 a~~~~ 224 (425)
+....
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 98753
No 305
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.48 E-value=5.6e-14 Score=114.28 Aligned_cols=71 Identities=17% Similarity=0.214 Sum_probs=62.7
Q ss_pred CceEEEcCC----CCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcC----HHH----HHHHHH--hcCCC
Q 014384 54 MRPIFCGNF----EYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDD----ERD----AEDAIR--GLDRT 111 (425)
Q Consensus 54 ~~~l~V~nL----~~~~t~~~L~~lF~~~G~V~~v~i--------~kg~aFV~F~~----~~~----A~~A~~--~lng~ 111 (425)
.++|||+|| ++.+|+++|.++|+.||+|.+|.+ ++|||||+|.+ +++ |.+|+. .|||.
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 368999999 999999999999999999999998 48999999996 433 788988 78999
Q ss_pred eecCCCcEEEEEEec
Q 014384 112 EFGRKGRRLRVEWTK 126 (425)
Q Consensus 112 ~ig~~gr~l~V~~a~ 126 (425)
.| +|+.|.|.+-.
T Consensus 82 ~I--~Gr~irV~ln~ 94 (136)
T 2j8a_A 82 FI--MGFKFEVILNK 94 (136)
T ss_dssp EE--TTEEEEEEECC
T ss_pred ee--cCcEEEEEECc
Confidence 99 89999999754
No 306
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.47 E-value=3e-14 Score=111.98 Aligned_cols=75 Identities=19% Similarity=0.216 Sum_probs=65.4
Q ss_pred CCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEE
Q 014384 147 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218 (425)
Q Consensus 147 ~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 218 (425)
.++..+|||+|| |..+++++|+++|.+||.|..+.++ +|||||+|.+.++|.+|++.||+..|+|+.|.|+
T Consensus 12 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~ 90 (95)
T 2ek1_A 12 KPGPTVIKVQNM-PFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLS 90 (95)
T ss_dssp ---CEEEEEECC-CTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence 345689999999 8999999999999999998766553 5899999999999999999999999999999999
Q ss_pred Eeee
Q 014384 219 YAVR 222 (425)
Q Consensus 219 ~a~~ 222 (425)
++..
T Consensus 91 ~a~s 94 (95)
T 2ek1_A 91 GPSS 94 (95)
T ss_dssp CCC-
T ss_pred eccC
Confidence 8753
No 307
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=3e-13 Score=108.20 Aligned_cols=77 Identities=19% Similarity=0.309 Sum_probs=69.1
Q ss_pred CCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEE-EEEe-------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEE
Q 014384 146 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIIS-VRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217 (425)
Q Consensus 146 ~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~-v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 217 (425)
......+|||+|| |..+++++|+++|.+||.|.. |.|+ +|||||+|.+.++|.+||.. ++..|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 11 DTANDGFVRLRGL-PFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SCSCCCEEEEESC-CTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 3456789999999 899999999999999999987 7774 68999999999999999997 999999999999
Q ss_pred EEeeeCC
Q 014384 218 EYAVRDD 224 (425)
Q Consensus 218 ~~a~~~~ 224 (425)
.++....
T Consensus 89 ~~~~~~~ 95 (104)
T 1wg5_A 89 FKSSRAE 95 (104)
T ss_dssp EEECTTT
T ss_pred EECCHHH
Confidence 9987643
No 308
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.47 E-value=1.5e-13 Score=113.63 Aligned_cols=72 Identities=17% Similarity=0.288 Sum_probs=66.5
Q ss_pred cEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe---ccE-EEEEEcCHHHHHHHHHHcCCCccCC--eEEEEEEeeeC
Q 014384 151 KTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR---RNF-AFVQYEVQEDATRALDATNMSKLTD--RVISVEYAVRD 223 (425)
Q Consensus 151 ~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~---~g~-afV~f~~~~~A~~A~~~l~g~~~~g--~~i~v~~a~~~ 223 (425)
..|||+|| ++.+++++|.++|++||.|..|.+. +|| |||+|.+.++|..|++.|||..|.| +.|+|+|++..
T Consensus 29 L~I~V~NL-~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 29 LRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEEESC-CSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred EEEEECCC-CCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 46679999 8999999999999999999999886 467 9999999999999999999999998 89999999875
No 309
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.47 E-value=7.1e-14 Score=110.03 Aligned_cols=78 Identities=21% Similarity=0.407 Sum_probs=69.8
Q ss_pred CCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEE---eccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeee
Q 014384 146 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI---RRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 222 (425)
Q Consensus 146 ~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 222 (425)
...+..+|||+|| |..+++++|+++|.+||.|..+.. .+|||||+|.+.++|.+|++.|||..|+|+.|.|.++..
T Consensus 12 ~~~~~~~l~V~nL-~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 12 KVRAARTLLAKNL-SFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp TTTGGGEEEEESC-CSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 3456789999999 889999999999999999887722 378999999999999999999999999999999999977
Q ss_pred CC
Q 014384 223 DD 224 (425)
Q Consensus 223 ~~ 224 (425)
..
T Consensus 91 ~~ 92 (96)
T 1fjc_A 91 KG 92 (96)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 310
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=3.2e-13 Score=109.83 Aligned_cols=78 Identities=21% Similarity=0.425 Sum_probs=70.2
Q ss_pred CCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe-------ccEEEEEEcCHHHHHHHHHHcCCCcc-------
Q 014384 145 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKL------- 210 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~------- 210 (425)
....+.++|||+|| |..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|.+|++.|||..|
T Consensus 20 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 20 QQEQDPTNLYISNL-PLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCCCTTEEEEESC-CTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred ccCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 34456789999999 8889999999999999999999995 47999999999999999999999999
Q ss_pred -CCeEEEEEEeeeC
Q 014384 211 -TDRVISVEYAVRD 223 (425)
Q Consensus 211 -~g~~i~v~~a~~~ 223 (425)
.+++|.|.|+.+.
T Consensus 99 ~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 99 APTEPLLCKFSGPS 112 (114)
T ss_dssp CCSSCBEEEECCCS
T ss_pred CCCCceeEEccCCC
Confidence 5788999999853
No 311
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=8e-14 Score=112.44 Aligned_cols=77 Identities=22% Similarity=0.324 Sum_probs=70.2
Q ss_pred CCCCcEEEEEcCCCCCCCHHHHHhhhccCCc-EEEEEEe---------ccEEEEEEcCHHHHHHHHHHcC--CCccCCeE
Q 014384 147 TRPSKTLFVINFDPYHTRTRDLERHFEPYGK-IISVRIR---------RNFAFVQYEVQEDATRALDATN--MSKLTDRV 214 (425)
Q Consensus 147 ~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~-v~~v~~~---------~g~afV~f~~~~~A~~A~~~l~--g~~~~g~~ 214 (425)
..+.++|||+|| |..+++++|+++|.+||. |..|.++ +|||||+|.+.++|..|++.|+ +..|+|+.
T Consensus 5 s~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~ 83 (109)
T 2dis_A 5 SSGNCRLFIGGI-PKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ 83 (109)
T ss_dssp CCCSEEEEEECC-CTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBC
T ss_pred ccCCCEEEEeCC-CCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCe
Confidence 346789999999 889999999999999998 9999986 5799999999999999999996 58999999
Q ss_pred EEEEEeeeCC
Q 014384 215 ISVEYAVRDD 224 (425)
Q Consensus 215 i~v~~a~~~~ 224 (425)
|.|.|+....
T Consensus 84 l~V~~a~~~~ 93 (109)
T 2dis_A 84 IAVDWAEPEI 93 (109)
T ss_dssp CEEEESCSSC
T ss_pred EEEEEcCCCC
Confidence 9999998754
No 312
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.47 E-value=2.9e-13 Score=111.35 Aligned_cols=75 Identities=25% Similarity=0.255 Sum_probs=67.0
Q ss_pred CCCcE--EEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--ccE-EEEEEcCHHHHHHHHHHcCCCccCC--eEEEEEEe
Q 014384 148 RPSKT--LFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RNF-AFVQYEVQEDATRALDATNMSKLTD--RVISVEYA 220 (425)
Q Consensus 148 ~~~~~--l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--~g~-afV~f~~~~~A~~A~~~l~g~~~~g--~~i~v~~a 220 (425)
+++++ |||+|| ++.+++++|.++|++||.|..|.|. .|| |||+|.+.++|..|++.|||..|.| +.|.|+||
T Consensus 21 ~ps~vl~l~V~NL-~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 21 GGNKVLLLSIQNP-LYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp CCCSEEEEEEESC-CSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred CCCcEEEEEEcCc-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 44554 578999 8999999999999999999999886 476 9999999999999999999999987 68999999
Q ss_pred eeC
Q 014384 221 VRD 223 (425)
Q Consensus 221 ~~~ 223 (425)
+..
T Consensus 100 k~~ 102 (124)
T 2e5i_A 100 RPT 102 (124)
T ss_dssp SCS
T ss_pred cCC
Confidence 875
No 313
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=2.1e-13 Score=107.28 Aligned_cols=76 Identities=24% Similarity=0.342 Sum_probs=69.1
Q ss_pred CCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEE-Ee----ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEee
Q 014384 147 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVR-IR----RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221 (425)
Q Consensus 147 ~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~-~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 221 (425)
....++|||+|| |..+++++|+++|.+||.|..|. ++ .+.|||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 12 RQRIRKLQIRNI-PPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp CCSCCCEEEEEE-CSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCCEEEEEcC-CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 345689999999 88999999999999999999994 65 3459999999999999999999999999999999998
Q ss_pred eC
Q 014384 222 RD 223 (425)
Q Consensus 222 ~~ 223 (425)
.+
T Consensus 91 ~~ 92 (96)
T 2e44_A 91 DE 92 (96)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 314
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.47 E-value=4.8e-14 Score=107.46 Aligned_cols=66 Identities=21% Similarity=0.348 Sum_probs=61.4
Q ss_pred cEEEEEcCCCCCC------CHHHHHhhhccCCcEEEEEEe------ccEEEEEEcCHHHHHHHHHHcCCCccCCe-EEEE
Q 014384 151 KTLFVINFDPYHT------RTRDLERHFEPYGKIISVRIR------RNFAFVQYEVQEDATRALDATNMSKLTDR-VISV 217 (425)
Q Consensus 151 ~~l~V~nl~p~~~------~~~~L~~~f~~~G~v~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~i~v 217 (425)
++|||+|| |..+ ++++|+++|++||.|..|.++ +|||||+|.+.++|.+|++.|||..|+|+ .|.|
T Consensus 2 ~~l~V~nL-p~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNV-PQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESC-CCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCC-CCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 68999999 7787 679999999999999999986 68999999999999999999999999999 8865
No 315
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.47 E-value=2e-13 Score=115.11 Aligned_cols=76 Identities=34% Similarity=0.566 Sum_probs=69.4
Q ss_pred CCCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEE
Q 014384 144 STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVI 215 (425)
Q Consensus 144 ~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 215 (425)
.....+..+|||+|| |..+++++|+++|.+||.|..|.++ +|||||+|.+.++|.+|++.|||..|+|+.|
T Consensus 57 ~~~~~~~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 135 (140)
T 2ku7_A 57 GGSATTKRVLYVGGL-AEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 135 (140)
T ss_dssp CSSCSSCCEEEEECC-CTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEE
T ss_pred CCCCCCCcEEEEEeC-CCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 345567899999999 8899999999999999999999984 6799999999999999999999999999999
Q ss_pred EEEEe
Q 014384 216 SVEYA 220 (425)
Q Consensus 216 ~v~~a 220 (425)
.|.+|
T Consensus 136 ~v~~A 140 (140)
T 2ku7_A 136 RVNLA 140 (140)
T ss_dssp EEEC-
T ss_pred EEEeC
Confidence 99875
No 316
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=2.9e-14 Score=109.63 Aligned_cols=72 Identities=24% Similarity=0.419 Sum_probs=66.0
Q ss_pred CCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEE
Q 014384 148 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 219 (425)
Q Consensus 148 ~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 219 (425)
.+.++|||+|| |..+++++|+++|.+||.|..|.++ +|||||+|.+.++|..|++.|||..|.|+.|++.+
T Consensus 3 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRGL-QPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEESC-CTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 56789999999 8899999999999999999999985 57999999999999999999999999999887755
Q ss_pred e
Q 014384 220 A 220 (425)
Q Consensus 220 a 220 (425)
+
T Consensus 82 ~ 82 (85)
T 1x4e_A 82 P 82 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 317
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.8e-13 Score=109.13 Aligned_cols=77 Identities=18% Similarity=0.349 Sum_probs=68.0
Q ss_pred CCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe-------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEE
Q 014384 145 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 217 (425)
....+..+|||+|| |+.+++++|+++|.+||.| .|.|+ +|||||+|.+.++|.+||+ +|+..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (102)
T 1wez_A 10 FQSTTGHCVHMRGL-PYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVEL 86 (102)
T ss_dssp CCCSSSCEEEEESC-CTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 34566789999999 8999999999999999955 88875 6799999999999999995 7999999999999
Q ss_pred EEeeeCC
Q 014384 218 EYAVRDD 224 (425)
Q Consensus 218 ~~a~~~~ 224 (425)
.++....
T Consensus 87 ~~~~~~~ 93 (102)
T 1wez_A 87 FLNSTAG 93 (102)
T ss_dssp EEECCCC
T ss_pred EECCCCC
Confidence 9987754
No 318
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.47 E-value=9.8e-14 Score=119.47 Aligned_cols=74 Identities=16% Similarity=0.300 Sum_probs=67.9
Q ss_pred CCcEEEEEcCCCCCCCHHHHHhhhccCC--cEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEE
Q 014384 149 PSKTLFVINFDPYHTRTRDLERHFEPYG--KIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218 (425)
Q Consensus 149 ~~~~l~V~nl~p~~~~~~~L~~~f~~~G--~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 218 (425)
...+|||+|| +..+++++|+++|.+|| .|..|.|+ +|||||+|.+.++|.+||+.|||..|+|+.|.|.
T Consensus 54 ~~~~lfVgnL-p~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSF-SWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECC-CTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 4579999999 89999999999999999 99999985 5799999999999999999999999999999999
Q ss_pred EeeeC
Q 014384 219 YAVRD 223 (425)
Q Consensus 219 ~a~~~ 223 (425)
++...
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 98653
No 319
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.47 E-value=5.9e-14 Score=117.78 Aligned_cols=77 Identities=17% Similarity=0.219 Sum_probs=69.1
Q ss_pred CCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCc---EEEEEEe-------ccEEEEEEcCHHHHHHHHHHcCCCccCCeE
Q 014384 145 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGK---IISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRV 214 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~---v~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 214 (425)
.......+|||+|| |+.+++++|+++|++||. |..|.|+ +|||||+|.+.++|.+||+ ||+..|+|+.
T Consensus 39 ~~~~~~~~lfVgnL-p~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 39 PEGGEGFVVKLRGL-PWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SSCCTTCEEEEESC-CTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 34456789999999 899999999999999999 7788875 6799999999999999999 9999999999
Q ss_pred EEEEEeeeC
Q 014384 215 ISVEYAVRD 223 (425)
Q Consensus 215 i~v~~a~~~ 223 (425)
|.|.++...
T Consensus 117 i~V~~a~~~ 125 (136)
T 2hgl_A 117 IEVFKSHRT 125 (136)
T ss_dssp EEEEECCHH
T ss_pred EEEEECChH
Confidence 999998653
No 320
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.1e-13 Score=113.10 Aligned_cols=76 Identities=22% Similarity=0.457 Sum_probs=69.3
Q ss_pred CCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEE
Q 014384 148 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 219 (425)
Q Consensus 148 ~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 219 (425)
.+.++|||+|| |..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|.+||+. ++..|+|+.|.|.+
T Consensus 25 ~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 25 EQFRKLFIGGL-SFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHTEEEEECC-TTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 34589999999 8899999999999999999999985 46999999999999999997 99999999999999
Q ss_pred eeeCCC
Q 014384 220 AVRDDD 225 (425)
Q Consensus 220 a~~~~~ 225 (425)
+..+..
T Consensus 103 a~~~~~ 108 (116)
T 1x4b_A 103 AVAREE 108 (116)
T ss_dssp CSSCCC
T ss_pred CCCCcc
Confidence 987643
No 321
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.46 E-value=1.7e-13 Score=113.21 Aligned_cols=72 Identities=24% Similarity=0.465 Sum_probs=67.5
Q ss_pred CcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEee
Q 014384 150 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221 (425)
Q Consensus 150 ~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 221 (425)
..+|||+|| |..+++++|+++|.+||.|..|.+. +|||||+|.+.++|.+|+ .|||..|+|+.|.|.++.
T Consensus 36 ~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 36 KRSVYVGNV-DYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HTEEEEEEE-CTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 579999999 8899999999999999999999985 579999999999999999 899999999999999987
Q ss_pred eC
Q 014384 222 RD 223 (425)
Q Consensus 222 ~~ 223 (425)
..
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 322
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=2.2e-13 Score=106.83 Aligned_cols=75 Identities=20% Similarity=0.323 Sum_probs=66.5
Q ss_pred CCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEec--c-EEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeCC
Q 014384 148 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRR--N-FAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDD 224 (425)
Q Consensus 148 ~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~~--g-~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~ 224 (425)
....+|||+|| |..+++++|+++|.+||.|..|.+.+ + ||||+|.+.++|.+|+. ||+..|+|+.|.|.++....
T Consensus 6 ~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 6 SGLRSVFVSGF-PRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp TTCCEEEEECC-CTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred CCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 44579999999 89999999999999999999984432 2 99999999999999999 99999999999999886643
No 323
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=9.6e-14 Score=113.08 Aligned_cols=70 Identities=23% Similarity=0.419 Sum_probs=59.5
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-----------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcE
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-----------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRR 119 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~-----------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~ 119 (425)
....++|||+|||+++|+++|+++|++||+|. +.+. +|||||+|.+.++|++||..|++ + +|+.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~--~G~~ 79 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--E--DGKL 79 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--E--TTEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--c--CCcE
Confidence 35678999999999999999999999999999 6551 68999999999999999998843 4 6676
Q ss_pred EEEEEe
Q 014384 120 LRVEWT 125 (425)
Q Consensus 120 l~V~~a 125 (425)
|.|..+
T Consensus 80 ~~~~~~ 85 (114)
T 2dnl_A 80 YLCVSS 85 (114)
T ss_dssp EEEECC
T ss_pred EEeccC
Confidence 666644
No 324
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.46 E-value=5.6e-14 Score=111.66 Aligned_cols=76 Identities=26% Similarity=0.453 Sum_probs=66.1
Q ss_pred CCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe---------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEE
Q 014384 145 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR---------RNFAFVQYEVQEDATRALDATNMSKLTDRVI 215 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~---------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 215 (425)
......++|||+|| +..+++++|+++|.+|| |..|.|. +|||||+|.+.++|.+|+ .|||..|+|+.|
T Consensus 14 ~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l 90 (100)
T 2j76_E 14 LPKSPPYTAFLGNL-PYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRI 90 (100)
T ss_dssp ------CEEEESCC-SSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCC
T ss_pred CCCCCCcEEEEeCC-CCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEE
Confidence 44566799999999 88999999999999999 9999984 579999999999999999 899999999999
Q ss_pred EEEEeeeC
Q 014384 216 SVEYAVRD 223 (425)
Q Consensus 216 ~v~~a~~~ 223 (425)
.|.++...
T Consensus 91 ~V~~a~~~ 98 (100)
T 2j76_E 91 RVDVADQA 98 (100)
T ss_dssp CCEECCCS
T ss_pred EEEeccCC
Confidence 99998764
No 325
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.46 E-value=1.3e-13 Score=123.09 Aligned_cols=74 Identities=19% Similarity=0.333 Sum_probs=66.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEe
Q 014384 53 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 125 (425)
Q Consensus 53 ~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~-------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a 125 (425)
..++|||+|||+.+|+++|.++|++||+|..|.|. +|||||+|.+.++|.+|+..++ ..| +|+.|.|.|+
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~--~Gr~l~V~~~ 184 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKY--KETDLLILFK 184 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEE--TTEECEEEET
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeE--CCEEEEEEEh
Confidence 45899999999999999999999999999999884 7999999999999999996655 578 8999999998
Q ss_pred cccc
Q 014384 126 KHER 129 (425)
Q Consensus 126 ~~~~ 129 (425)
....
T Consensus 185 ~~y~ 188 (193)
T 2voo_A 185 DDYF 188 (193)
T ss_dssp TTC-
T ss_pred HHHH
Confidence 7643
No 326
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.46 E-value=1e-13 Score=107.34 Aligned_cols=73 Identities=18% Similarity=0.278 Sum_probs=68.1
Q ss_pred CCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeC
Q 014384 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 223 (425)
Q Consensus 149 ~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 223 (425)
...+|||+|| |..+++++|+++|.+| .|..+.+. +|||||+|.+.++|.+|++.|||..++|+.|.|+++..+
T Consensus 4 ~~~~l~V~nL-p~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 4 GSSGILVKNL-PQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCEEEESC-CSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 4678999999 8999999999999999 99998885 789999999999999999999999999999999998764
No 327
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=7.8e-14 Score=113.54 Aligned_cols=73 Identities=26% Similarity=0.419 Sum_probs=68.2
Q ss_pred CCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEe
Q 014384 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220 (425)
Q Consensus 149 ~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 220 (425)
..++|||+|| |..+++++|+++|.+||.|..|.|. +|||||+|.+.++|.+|+ .||+..|+|+.|.|.++
T Consensus 24 ~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 24 DARTVFCMQL-AARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHTEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 3479999999 8899999999999999999999995 579999999999999999 99999999999999998
Q ss_pred eeC
Q 014384 221 VRD 223 (425)
Q Consensus 221 ~~~ 223 (425)
...
T Consensus 102 ~~~ 104 (114)
T 2cq4_A 102 QAE 104 (114)
T ss_dssp HHH
T ss_pred CCC
Confidence 764
No 328
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.45 E-value=2.5e-13 Score=109.65 Aligned_cols=77 Identities=18% Similarity=0.348 Sum_probs=66.7
Q ss_pred CCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEE
Q 014384 146 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217 (425)
Q Consensus 146 ~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 217 (425)
...+.++|||+|| |..+++++|+++|.+||.|..|.+. +|||||+|.+.++|.+|++.+ +..|+|+.|.|
T Consensus 21 ~~~~~~~lfV~nL-p~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 21 MGSSGCKMFIGGL-SWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp -----CCEEEESC-CTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 3456789999999 8899999999999999999999995 579999999999999999986 49999999999
Q ss_pred EEeeeCC
Q 014384 218 EYAVRDD 224 (425)
Q Consensus 218 ~~a~~~~ 224 (425)
.++....
T Consensus 99 ~~a~~~~ 105 (109)
T 2rs2_A 99 KVAFPRR 105 (109)
T ss_dssp EECCCCC
T ss_pred EEccCCC
Confidence 9998753
No 329
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.44 E-value=1.6e-13 Score=112.44 Aligned_cols=77 Identities=18% Similarity=0.255 Sum_probs=69.6
Q ss_pred CCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCc---EEEEEEe-------ccEEEEEEcCHHHHHHHHHHcCCCccCCeE
Q 014384 145 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGK---IISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRV 214 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~---v~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 214 (425)
.......+|||+|| |..+++++|+++|..||. |..|.|+ +|||||+|.+.++|.+||+ ||+..|+|+.
T Consensus 12 ~~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~ 89 (118)
T 2db1_A 12 PEGGEGYVVKLRGL-PWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRY 89 (118)
T ss_dssp SCBCCCCEEEEESC-CTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEE
T ss_pred CCCCCCcEEEEeCC-CCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeE
Confidence 34456789999999 899999999999999998 8888875 6799999999999999999 9999999999
Q ss_pred EEEEEeeeC
Q 014384 215 ISVEYAVRD 223 (425)
Q Consensus 215 i~v~~a~~~ 223 (425)
|.|.++..+
T Consensus 90 i~V~~a~~~ 98 (118)
T 2db1_A 90 IEVFKSHRT 98 (118)
T ss_dssp EEEEEECHH
T ss_pred EEEEECCHH
Confidence 999998664
No 330
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.44 E-value=2.2e-13 Score=116.93 Aligned_cols=73 Identities=15% Similarity=0.224 Sum_probs=67.2
Q ss_pred CcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe----ccEEEEEEcCHHHHHHHHHHcCCCccCC--eEEEEEEeeeC
Q 014384 150 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR----RNFAFVQYEVQEDATRALDATNMSKLTD--RVISVEYAVRD 223 (425)
Q Consensus 150 ~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~i~v~~a~~~ 223 (425)
..+|||+|| ++.+++++|+++|++||.|..|.|. ++||||+|.+.++|.+|++.|||..|.| +.|.|+|++..
T Consensus 46 vl~l~VgNL-~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 46 VLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp EEEEEECSC-CSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred eEEEEEeCc-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 456889999 8999999999999999999999985 4699999999999999999999999965 99999999875
No 331
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.43 E-value=1.5e-13 Score=128.57 Aligned_cols=113 Identities=15% Similarity=0.119 Sum_probs=84.7
Q ss_pred eeeEEEEeCCCCccccccc-CCcceeecccccccchhhhhhhcCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--
Q 014384 10 CHYLLIVYSHSVWPVQKKY-LPRRLYVLGFRRSHSQLSIAAFEAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM-- 86 (425)
Q Consensus 10 ~~y~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i-- 86 (425)
..||||.|.+...+..+.. ++...... ... .........+|||+|||+.+|+++|.++|..||.|..|.|
T Consensus 58 kg~afV~f~~~~~A~~A~~~l~g~~i~g-~~l------~v~~a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~ 130 (261)
T 3sde_A 58 RGFGFIRLESRTLAEIAKAELDGTILKS-RPL------RIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVV 130 (261)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCEETT-EEC------EEEECCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred CcEEEEEECCHHHHHHHHHHcCCcEECC-cee------EeeecccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeee
Confidence 3599999988776555542 22222211 110 1122345789999999999999999999999999999998
Q ss_pred -----eCCEEEEEEcCHHHHHHHHHhcCC-Cee-cCCCcEEEEEEecccc
Q 014384 87 -----KSGFAFIYMDDERDAEDAIRGLDR-TEF-GRKGRRLRVEWTKHER 129 (425)
Q Consensus 87 -----~kg~aFV~F~~~~~A~~A~~~lng-~~i-g~~gr~l~V~~a~~~~ 129 (425)
++|||||+|.+.++|.+|+..||+ ..+ +..+++|.|.++....
T Consensus 131 ~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 131 DDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp ETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred CCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 379999999999999999999954 444 1249999999998654
No 332
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.43 E-value=3.4e-14 Score=119.66 Aligned_cols=117 Identities=14% Similarity=0.199 Sum_probs=66.8
Q ss_pred CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEeccccCCCCCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHH
Q 014384 88 SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRD 167 (425)
Q Consensus 88 kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~ 167 (425)
+++||.+|..++.+..|+..+..+.= |...--.. .............+|||+|| |+.+++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~g---g~~~g~~~--------------g~~~~~~~~~~~~~lfV~nL-p~~~te~d 62 (139)
T 2hgn_A 1 MGSSHHHHHHSSGLVPRGSHMASMTG---GQQMGRGS--------------GDSEFTVQSTTGHCVHMRGL-PYKATEND 62 (139)
T ss_dssp -------------------------------------------------------------CCCCEECCSC-CTTCCHHH
T ss_pred CCcccccccCccccchhcccchhccC---CCCCCCCC--------------CCcccCCCCCCCCEEEEeCC-CCCCCHHH
Confidence 47889999988888877765544321 11110000 00111223455689999999 89999999
Q ss_pred HHhhhccCCcEEEEEEe-------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeCC
Q 014384 168 LERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDD 224 (425)
Q Consensus 168 L~~~f~~~G~v~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~ 224 (425)
|+++|++|| |+.|.|+ +|||||+|.+.++|.+|| .+|+..|+|+.|.|.++....
T Consensus 63 L~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 63 IYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp HHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSC
T ss_pred HHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCC
Confidence 999999999 6688885 689999999999999999 799999999999999987754
No 333
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.43 E-value=8.2e-14 Score=104.37 Aligned_cols=67 Identities=21% Similarity=0.489 Sum_probs=62.4
Q ss_pred EEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEe
Q 014384 152 TLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220 (425)
Q Consensus 152 ~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 220 (425)
+|||+|| |..+++++|+++|.+||.|..|.++ +|||||+|.+.++|.+|++ ||+..|+|+.|.|.+|
T Consensus 1 ~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGL-SVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECC-CSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 4899999 8899999999999999999999885 4799999999999999998 9999999999999875
No 334
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.9e-13 Score=111.26 Aligned_cols=77 Identities=19% Similarity=0.229 Sum_probs=69.6
Q ss_pred CCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcE-EEEEEe-------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEE
Q 014384 146 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKI-ISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 217 (425)
Q Consensus 146 ~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v-~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 217 (425)
...+..+|||+|| |..+++++|+++|..||.| ..|.|+ +|||||+|.+.++|.+||+. |+..|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNI-PFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESC-CTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCc-CCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 3456789999999 8999999999999999999 778774 78999999999999999987 999999999999
Q ss_pred EEeeeCC
Q 014384 218 EYAVRDD 224 (425)
Q Consensus 218 ~~a~~~~ 224 (425)
.++..+.
T Consensus 89 ~~a~~~~ 95 (114)
T 2cpy_A 89 HVVTLED 95 (114)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9998753
No 335
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=8.7e-14 Score=115.11 Aligned_cols=77 Identities=14% Similarity=0.274 Sum_probs=67.8
Q ss_pred CCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEE-EE-------eccEEEEEEcCHHHHHHHHHHcCCCccCCeEEE
Q 014384 145 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISV-RI-------RRNFAFVQYEVQEDATRALDATNMSKLTDRVIS 216 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v-~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 216 (425)
.......+|||+|| |..+++++|+++|..||.|..+ .+ .+|||||+|.+.++|.+||+ ||+..|+|+.|.
T Consensus 20 ~~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 97 (124)
T 1wel_A 20 SPHEAGFCVYLKGL-PFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQ 97 (124)
T ss_dssp SCCCCCCEEEEECC-CTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBE
T ss_pred CCCCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEE
Confidence 34556789999999 8999999999999999998653 33 26899999999999999999 999999999999
Q ss_pred EEEeeeC
Q 014384 217 VEYAVRD 223 (425)
Q Consensus 217 v~~a~~~ 223 (425)
|.++..+
T Consensus 98 V~~a~~~ 104 (124)
T 1wel_A 98 VHPITKK 104 (124)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998764
No 336
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.43 E-value=1.6e-13 Score=114.65 Aligned_cols=77 Identities=25% Similarity=0.435 Sum_probs=69.5
Q ss_pred CCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEE--EEEe--------ccEEEEEEcCHHHHHHHHHHcCCC----cc
Q 014384 145 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIIS--VRIR--------RNFAFVQYEVQEDATRALDATNMS----KL 210 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~--v~~~--------~g~afV~f~~~~~A~~A~~~l~g~----~~ 210 (425)
....+..+|||+|| |..+++++|+++|.+||.|.. |.|+ +|||||+|.+. +|.+|+..|||. .|
T Consensus 18 ~~~~~~~~lfV~nL-~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 18 SSENANDTIILRNL-NPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCSCCCCEEEECSC-CTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 34466789999999 889999999999999999966 7774 68999999999 999999999999 99
Q ss_pred CCeEEEEEEeeeC
Q 014384 211 TDRVISVEYAVRD 223 (425)
Q Consensus 211 ~g~~i~v~~a~~~ 223 (425)
+|+.|.|.++...
T Consensus 96 ~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 96 DGKTINVEFAKGS 108 (131)
T ss_dssp GGCCCCCEECCCS
T ss_pred CCEEEEEEECCCC
Confidence 9999999999775
No 337
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.43 E-value=6.5e-14 Score=108.88 Aligned_cols=72 Identities=21% Similarity=0.473 Sum_probs=64.8
Q ss_pred cEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeee
Q 014384 151 KTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 222 (425)
Q Consensus 151 ~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 222 (425)
++|||+|| |..+++++|+++|.+||.|..|.+. +|||||+|.+.+ |.+|+..|||..|+|+.|.|.+|..
T Consensus 2 ~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNL-VYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEE-CTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCC-CCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 58999999 8899999999999999999999995 579999999999 9999999999999999999999987
Q ss_pred CC
Q 014384 223 DD 224 (425)
Q Consensus 223 ~~ 224 (425)
..
T Consensus 80 ~~ 81 (90)
T 2ki2_A 80 KK 81 (90)
T ss_dssp --
T ss_pred CC
Confidence 53
No 338
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.42 E-value=4.2e-13 Score=120.96 Aligned_cols=76 Identities=18% Similarity=0.184 Sum_probs=70.2
Q ss_pred CCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe---ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeC
Q 014384 148 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR---RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 223 (425)
Q Consensus 148 ~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 223 (425)
.++++|||+||++..+++++|+++|.+||.|..|.++ +|||||+|.+.++|..|++.|||..|.|+.|.|.+++.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQP 80 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCC
Confidence 4578999999943889999999999999999999996 589999999999999999999999999999999998764
No 339
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=1.3e-13 Score=103.82 Aligned_cols=68 Identities=21% Similarity=0.423 Sum_probs=63.7
Q ss_pred cEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEe
Q 014384 151 KTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220 (425)
Q Consensus 151 ~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 220 (425)
++|||+|| |..+++++|+++|++||.|..|.++ +|||||+|.+.++|.+|++.++ ..++|+.|.|.+|
T Consensus 1 ~~l~v~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGL-SWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESC-CSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999 8899999999999999999999885 4799999999999999999999 9999999999986
No 340
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.41 E-value=4.5e-13 Score=110.25 Aligned_cols=77 Identities=30% Similarity=0.456 Sum_probs=69.7
Q ss_pred CCCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeee
Q 014384 145 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 222 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 222 (425)
....+.++|||+|| .+++++|+++|++||.|..|.+. +|||||+|.+.++|.+|++.|||..|+|+.|.|.++..
T Consensus 34 ~~~~~~~~lfVgnl---~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE---DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp -CCCCCCEEEEECS---SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CCCCCCCEEEEcCC---CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 34456789999997 37899999999999999999987 79999999999999999999999999999999999987
Q ss_pred CC
Q 014384 223 DD 224 (425)
Q Consensus 223 ~~ 224 (425)
..
T Consensus 111 ~~ 112 (121)
T 2bz2_A 111 QP 112 (121)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 341
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.13 E-value=1.6e-14 Score=118.02 Aligned_cols=78 Identities=21% Similarity=0.314 Sum_probs=70.6
Q ss_pred CCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEE--------EEEe--------ccEEEEEEcCHHHHHHHHHHcCCCcc
Q 014384 147 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIIS--------VRIR--------RNFAFVQYEVQEDATRALDATNMSKL 210 (425)
Q Consensus 147 ~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~--------v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~ 210 (425)
..+.++|||+|| |..+++++|+++|.+||.|.. |.|+ +|||||+|.+.++|.+|+..||+..|
T Consensus 4 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 4 NSDNNTIFVQGL-GENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 456789999999 889999999999999999988 6664 57999999999999999999999999
Q ss_pred CCeEEEEEEeeeCCC
Q 014384 211 TDRVISVEYAVRDDD 225 (425)
Q Consensus 211 ~g~~i~v~~a~~~~~ 225 (425)
.|+.|.|.++..+..
T Consensus 83 ~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 83 SGNPIKVSFATRRAD 97 (116)
Confidence 999999999988643
No 342
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.41 E-value=4.5e-13 Score=103.25 Aligned_cols=69 Identities=22% Similarity=0.503 Sum_probs=64.9
Q ss_pred CCCcEEEEEcCCCCCCCHHHHHhhhccC----C-------cEEEEEEe--ccEEEEEEcCHHHHHHHHHHcCCCccCCeE
Q 014384 148 RPSKTLFVINFDPYHTRTRDLERHFEPY----G-------KIISVRIR--RNFAFVQYEVQEDATRALDATNMSKLTDRV 214 (425)
Q Consensus 148 ~~~~~l~V~nl~p~~~~~~~L~~~f~~~----G-------~v~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 214 (425)
.+..+|||+|| |..+++++|+++|.+| | .|..+.+. +|||||+|.+.++|.+|+ .|||..|+|+.
T Consensus 4 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~ 81 (87)
T 2hzc_A 4 GSARRLYVGNI-PFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 81 (87)
T ss_dssp GGGGEEEEESC-CTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeE
Confidence 45789999999 8899999999999999 8 99999997 799999999999999999 99999999999
Q ss_pred EEEE
Q 014384 215 ISVE 218 (425)
Q Consensus 215 i~v~ 218 (425)
|.|+
T Consensus 82 l~V~ 85 (87)
T 2hzc_A 82 LKIR 85 (87)
T ss_dssp CEEE
T ss_pred EEEe
Confidence 9986
No 343
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.41 E-value=4.4e-13 Score=117.88 Aligned_cols=77 Identities=18% Similarity=0.330 Sum_probs=71.2
Q ss_pred CCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe-------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEE
Q 014384 146 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218 (425)
Q Consensus 146 ~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 218 (425)
...+.++|||+|| +..+++++|+++|.+||.|+.|.|. +|||||+|.+.++|.+|++.||+..|+|+.|.|+
T Consensus 84 ~~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNL-DFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECC-CSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4456789999999 8899999999999999999999995 5899999999999999999999999999999999
Q ss_pred EeeeC
Q 014384 219 YAVRD 223 (425)
Q Consensus 219 ~a~~~ 223 (425)
|+...
T Consensus 163 ~a~~~ 167 (177)
T 2f3j_A 163 LVASQ 167 (177)
T ss_dssp EESSG
T ss_pred EecCC
Confidence 99764
No 344
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.40 E-value=1.2e-13 Score=109.87 Aligned_cols=76 Identities=21% Similarity=0.284 Sum_probs=66.4
Q ss_pred CCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEE-------eccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEE
Q 014384 147 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI-------RRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 219 (425)
Q Consensus 147 ~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 219 (425)
..+..+|||+|| |..+++++|+++|.+||.|..+.+ .+|||||+|.+.++|.+|++ ||+..|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNL-NPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECC-CTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 446789999999 899999999999999997655111 27899999999999999998 999999999999999
Q ss_pred eeeCC
Q 014384 220 AVRDD 224 (425)
Q Consensus 220 a~~~~ 224 (425)
+....
T Consensus 92 a~~~~ 96 (101)
T 1fj7_A 92 PKGRD 96 (101)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 97753
No 345
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=3.8e-13 Score=108.41 Aligned_cols=72 Identities=18% Similarity=0.272 Sum_probs=66.1
Q ss_pred CCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe-------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEee
Q 014384 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221 (425)
Q Consensus 149 ~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 221 (425)
...+|||+|| |+.+++++|+++|+.| .|..|.|+ +|||||+|.+.++|.+|| .||+..|+|+.|.|..+.
T Consensus 15 ~~~~v~V~nL-p~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGM-PFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECC-CSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3579999999 8999999999999999 89999985 689999999999999999 699999999999998886
Q ss_pred eC
Q 014384 222 RD 223 (425)
Q Consensus 222 ~~ 223 (425)
..
T Consensus 92 ~~ 93 (109)
T 2dnn_A 92 ER 93 (109)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 346
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.40 E-value=3.2e-13 Score=114.54 Aligned_cols=76 Identities=25% Similarity=0.399 Sum_probs=68.1
Q ss_pred CCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEE--------EEEe-----ccEEEEEEcCHHHHHHHHHHcCCCccCCe
Q 014384 147 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIIS--------VRIR-----RNFAFVQYEVQEDATRALDATNMSKLTDR 213 (425)
Q Consensus 147 ~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~--------v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 213 (425)
..+.++|||+|| |..+++++|+++|.+||.|.. +.+. +|||||+|.+.++|.+|+..|||..|.|+
T Consensus 42 ~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 42 GEPNCRIYVKNL-AKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CSCCSEEEEEEE-CTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 567789999999 889999999999999998765 3332 68999999999999999999999999999
Q ss_pred EEEEEEeeeC
Q 014384 214 VISVEYAVRD 223 (425)
Q Consensus 214 ~i~v~~a~~~ 223 (425)
.|.|.++...
T Consensus 121 ~l~V~~a~~~ 130 (143)
T 3egn_A 121 PMVVQFARSA 130 (143)
T ss_dssp ECEEEECCCS
T ss_pred EEEEEECCCC
Confidence 9999999764
No 347
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.40 E-value=7.7e-13 Score=102.66 Aligned_cols=74 Identities=20% Similarity=0.327 Sum_probs=60.3
Q ss_pred CCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe---ccEEEEEEcCHHHHHHHHHHcCCCc--cCCeEEEEEEe
Q 014384 146 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR---RNFAFVQYEVQEDATRALDATNMSK--LTDRVISVEYA 220 (425)
Q Consensus 146 ~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~--~~g~~i~v~~a 220 (425)
...+.++|||+|| |..+++++|+++|++||.|..|.|+ +|||||+|.+.++|.+ |++.. +.|+.|.|.++
T Consensus 7 ~~~~~~~l~V~~L-p~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 7 HHHHGSKVFVGRC-TEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp ----CCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEEC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEc
Confidence 4566789999999 8999999999999999999999997 7999999999999983 45554 45999999998
Q ss_pred eeCC
Q 014384 221 VRDD 224 (425)
Q Consensus 221 ~~~~ 224 (425)
..+.
T Consensus 82 ~~k~ 85 (89)
T 3d2w_A 82 EPKH 85 (89)
T ss_dssp C---
T ss_pred CCCC
Confidence 7643
No 348
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.40 E-value=3.2e-13 Score=123.75 Aligned_cols=74 Identities=18% Similarity=0.307 Sum_probs=67.8
Q ss_pred CCcEEEEEcCCCCCCCHHHHHhhhccCC--cEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEE
Q 014384 149 PSKTLFVINFDPYHTRTRDLERHFEPYG--KIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218 (425)
Q Consensus 149 ~~~~l~V~nl~p~~~~~~~L~~~f~~~G--~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 218 (425)
..++|||+|| +..+++++|+++|.+|| .|+.|.|+ +|||||+|.+.++|.+||+.||+..|.|+.|.|.
T Consensus 67 ~~~~lfVgnL-~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNL-TWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESC-CTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCC-CCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 4678999999 89999999999999999 99999985 5799999999999999999999999999999999
Q ss_pred EeeeC
Q 014384 219 YAVRD 223 (425)
Q Consensus 219 ~a~~~ 223 (425)
++...
T Consensus 146 ~a~~~ 150 (229)
T 3q2s_C 146 PVNKQ 150 (229)
T ss_dssp ECCHH
T ss_pred ECCCC
Confidence 98753
No 349
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.39 E-value=5.6e-13 Score=128.41 Aligned_cols=79 Identities=15% Similarity=0.290 Sum_probs=68.3
Q ss_pred hhcCCCceEEEcC--CCCCCCHHHHHHHHhhcCCeeEEEE--eCCEEEEEEcCHHHHHHHHHhcCCCee-cCCCc--EEE
Q 014384 49 AFEAMMRPIFCGN--FEYDARQSDLERLFRRYGKVDRVDM--KSGFAFIYMDDERDAEDAIRGLDRTEF-GRKGR--RLR 121 (425)
Q Consensus 49 ~~~~~~~~l~V~n--L~~~~t~~~L~~lF~~~G~V~~v~i--~kg~aFV~F~~~~~A~~A~~~lng~~i-g~~gr--~l~ 121 (425)
....++.+|||+| |+..+|+++|+++|++||+|..|.| .+|||||+|.+.++|++|++.|||+.+ +..|+ .|.
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence 3467789999999 5789999999999999999999998 589999999999999999999999987 22345 677
Q ss_pred EEEecc
Q 014384 122 VEWTKH 127 (425)
Q Consensus 122 V~~a~~ 127 (425)
|.|+..
T Consensus 93 ~~~~~~ 98 (345)
T 3tht_A 93 LNFVEK 98 (345)
T ss_dssp EEECSS
T ss_pred EEEeec
Confidence 788753
No 350
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.38 E-value=2.6e-13 Score=109.14 Aligned_cols=76 Identities=14% Similarity=0.200 Sum_probs=69.0
Q ss_pred CCCCCcEEEEEcCCCCCCCHHHHHhhhccCCc---EEEEEEe-------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEE
Q 014384 146 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGK---IISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVI 215 (425)
Q Consensus 146 ~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~---v~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 215 (425)
......+|||+|| |..+++++|+++|..||. |..|.|. +|||||+|.+.++|.+||. ||+..|+|+.|
T Consensus 7 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGL-PWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECC-CSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCC-CCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 3456789999999 899999999999999998 8888885 6799999999999999999 99999999999
Q ss_pred EEEEeeeC
Q 014384 216 SVEYAVRD 223 (425)
Q Consensus 216 ~v~~a~~~ 223 (425)
.|.++...
T Consensus 85 ~V~~a~~~ 92 (107)
T 2lmi_A 85 EVYEINNE 92 (107)
T ss_dssp CCEECCHH
T ss_pred EEEECCHH
Confidence 99998764
No 351
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=3.2e-12 Score=103.60 Aligned_cols=80 Identities=16% Similarity=0.199 Sum_probs=69.2
Q ss_pred CCCCCCcEEEEEcCCCCCCC-----------HHHHHhhhccCCcEEEEEEe----ccEEEEEEcCHHHHHHHHHHcCCCc
Q 014384 145 TNTRPSKTLFVINFDPYHTR-----------TRDLERHFEPYGKIISVRIR----RNFAFVQYEVQEDATRALDATNMSK 209 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~p~~~~-----------~~~L~~~f~~~G~v~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~ 209 (425)
....+..+|+|.|| ..... +++|+++|.+||.|..|.|. +|||||+|.+.++|.+|+..|||..
T Consensus 10 ~~~~~s~~l~l~Nl-~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 10 SRMRHERVVIIKNM-FHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CCCCSCCEEEEESS-CCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCCCCceEEEEEcC-CCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 34567899999999 33322 57999999999999999875 7999999999999999999999999
Q ss_pred cCCeEEEEEEeeeCCC
Q 014384 210 LTDRVISVEYAVRDDD 225 (425)
Q Consensus 210 ~~g~~i~v~~a~~~~~ 225 (425)
|+|+.|.|.++.....
T Consensus 89 ~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 89 FGGRQITAQAWDGTTD 104 (112)
T ss_dssp ETTEECEEEECCSCCC
T ss_pred ECCcEEEEEEeCCCCC
Confidence 9999999999977543
No 352
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.37 E-value=1.2e-12 Score=104.86 Aligned_cols=75 Identities=17% Similarity=0.308 Sum_probs=65.2
Q ss_pred CCCceEEEcCC--CCCCC--------HHHHHHHHhhcCCeeEEEEe----------CCEEEEEEcCHHHHHHHHHhcCCC
Q 014384 52 AMMRPIFCGNF--EYDAR--------QSDLERLFRRYGKVDRVDMK----------SGFAFIYMDDERDAEDAIRGLDRT 111 (425)
Q Consensus 52 ~~~~~l~V~nL--~~~~t--------~~~L~~lF~~~G~V~~v~i~----------kg~aFV~F~~~~~A~~A~~~lng~ 111 (425)
.++++|.|.|+ +..+. +++|+++|++||+|..|.|. +|+|||+|.++++|.+|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46788999998 33333 47899999999999999983 599999999999999999999999
Q ss_pred eecCCCcEEEEEEeccc
Q 014384 112 EFGRKGRRLRVEWTKHE 128 (425)
Q Consensus 112 ~ig~~gr~l~V~~a~~~ 128 (425)
.| .|+.|.|.|+...
T Consensus 83 ~f--~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KF--ANRVVVTKYCDPD 97 (105)
T ss_dssp EE--TTEECEEEEECHH
T ss_pred Ee--CCCEEEEEEeCHH
Confidence 99 8999999998654
No 353
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=4.6e-13 Score=103.59 Aligned_cols=74 Identities=22% Similarity=0.286 Sum_probs=63.0
Q ss_pred CCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe---ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeCC
Q 014384 148 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR---RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDD 224 (425)
Q Consensus 148 ~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~ 224 (425)
.+.++|||+|| |..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|++|+.. ...+.|..|.|.++..+.
T Consensus 3 ~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 3 SGSSGVFVGRC-TGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKH 79 (88)
T ss_dssp SCCCEEEEESC-CSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCC
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCC
Confidence 45689999999 8999999999999999999999996 78999999999999754321 344589999999987754
No 354
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.35 E-value=1.4e-12 Score=119.22 Aligned_cols=77 Identities=25% Similarity=0.305 Sum_probs=68.9
Q ss_pred CCCCcEEEEEcCCCCCC---------CHHHHHhhhccCCcEEEEEEe--ccEEEEEEcCHHHHHHHHHHcCCCcc-----
Q 014384 147 TRPSKTLFVINFDPYHT---------RTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDATNMSKL----- 210 (425)
Q Consensus 147 ~~~~~~l~V~nl~p~~~---------~~~~L~~~f~~~G~v~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~----- 210 (425)
.....+|||+|| +..+ ++++|+++|++||.|..|.|. +|||||+|.+.++|+.|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL-~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 131 RKKNKTLYVGGI-DGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCCCEEEEECT-TGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred ccCCceeecCCC-ChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 456789999999 6666 699999999999999999996 89999999999999999999999999
Q ss_pred -------CCeEEEEEEeeeCC
Q 014384 211 -------TDRVISVEYAVRDD 224 (425)
Q Consensus 211 -------~g~~i~v~~a~~~~ 224 (425)
.|+.|.|.||....
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp TTGGGGGGSCCCEEEECC---
T ss_pred ccccccCCCCEEEEEEccCCC
Confidence 89999999998754
No 355
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=4.7e-12 Score=100.15 Aligned_cols=62 Identities=23% Similarity=0.349 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHHhhcCCeeEEEE---eCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEecccc
Q 014384 64 YDARQSDLERLFRRYGKVDRVDM---KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 129 (425)
Q Consensus 64 ~~~t~~~L~~lF~~~G~V~~v~i---~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~~ 129 (425)
..+|+++|+++|++||+|..|.| ++|||||+|.+.++|+.||..+++ + .|+.|.|.|+....
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~--~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--L--VDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--C--SSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--C--CCCeEEEEEccCCC
Confidence 56899999999999999999999 489999999999999999988655 4 68999999987654
No 356
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.34 E-value=1e-12 Score=104.56 Aligned_cols=74 Identities=18% Similarity=0.382 Sum_probs=68.1
Q ss_pred CCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe-------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEe
Q 014384 148 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220 (425)
Q Consensus 148 ~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 220 (425)
.+.++|||+|| |..+++++|+++|.+||.|..|.++ +|||||+|.+.++|.+|+. ++..|+|+.|.|.++
T Consensus 7 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGI-DVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 34689999999 8899999999999999999999995 4899999999999999998 999999999999999
Q ss_pred eeCC
Q 014384 221 VRDD 224 (425)
Q Consensus 221 ~~~~ 224 (425)
....
T Consensus 84 ~~~~ 87 (102)
T 2xs2_A 84 IRKQ 87 (102)
T ss_dssp EECC
T ss_pred CcCc
Confidence 8754
No 357
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.34 E-value=3.8e-12 Score=101.82 Aligned_cols=76 Identities=21% Similarity=0.230 Sum_probs=66.3
Q ss_pred CCCCcEEEEEcCC-CC---CCCHHHHHhhhccCCcEEEEEEe---------ccEEEEEEcCHHHHHHHHHHcCCCccCCe
Q 014384 147 TRPSKTLFVINFD-PY---HTRTRDLERHFEPYGKIISVRIR---------RNFAFVQYEVQEDATRALDATNMSKLTDR 213 (425)
Q Consensus 147 ~~~~~~l~V~nl~-p~---~~~~~~L~~~f~~~G~v~~v~~~---------~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 213 (425)
..++.+|+|.||- +. ..++++|+++|++||.|..|.|+ +|||||+|.+.++|.+|++.|||..|+|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 4567899999992 11 23589999999999999999985 47999999999999999999999999999
Q ss_pred EEEEEEeee
Q 014384 214 VISVEYAVR 222 (425)
Q Consensus 214 ~i~v~~a~~ 222 (425)
.|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999875
No 358
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.32 E-value=3.6e-13 Score=100.81 Aligned_cols=67 Identities=16% Similarity=0.388 Sum_probs=62.0
Q ss_pred EEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEe
Q 014384 152 TLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 220 (425)
Q Consensus 152 ~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 220 (425)
+|||+|| |..+++++|+++|++||.|..|.++ +|||||+|.+.++|.+|++. ++..++|+.|.|.+|
T Consensus 1 ~l~v~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGL-SPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCC-CSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 5899999 8899999999999999999999885 57999999999999999984 899999999999875
No 359
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.31 E-value=2.4e-12 Score=106.27 Aligned_cols=75 Identities=20% Similarity=0.351 Sum_probs=65.9
Q ss_pred CCCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEE--EEEEe-------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEE
Q 014384 146 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKII--SVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 216 (425)
Q Consensus 146 ~~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~--~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 216 (425)
......+|||+|| |+.+++++|+++|++| .|+ .|.|+ +|||||+|.+.++|.+||+. ++..|+|+.|.
T Consensus 38 ~~~~~~~lfVgnL-p~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGL-PFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECC-CTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEE
Confidence 4456789999999 8999999999999999 666 78875 68999999999999999984 77999999999
Q ss_pred EEEeeeC
Q 014384 217 VEYAVRD 223 (425)
Q Consensus 217 v~~a~~~ 223 (425)
|..+..+
T Consensus 115 V~~a~~~ 121 (126)
T 2hgm_A 115 VFKSSQE 121 (126)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9888653
No 360
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.31 E-value=6.1e-13 Score=106.34 Aligned_cols=65 Identities=20% Similarity=0.476 Sum_probs=57.6
Q ss_pred EcCCCCCCCHHHHHHHH------------hhcCCeeEEEEe-------CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcE
Q 014384 59 CGNFEYDARQSDLERLF------------RRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRR 119 (425)
Q Consensus 59 V~nL~~~~t~~~L~~lF------------~~~G~V~~v~i~-------kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~ 119 (425)
+.||+..+|+++|.++| ++||+|..|.|. +|||||+|.++++|.+|+..|||..| +|+.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~--~Gr~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWF--NGQP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEE--TTEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEE--CCEE
Confidence 56777777877777666 999999999994 79999999999999999999999999 8999
Q ss_pred EEEEEe
Q 014384 120 LRVEWT 125 (425)
Q Consensus 120 l~V~~a 125 (425)
|.|+|+
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 999986
No 361
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.30 E-value=6.7e-12 Score=102.45 Aligned_cols=77 Identities=19% Similarity=0.244 Sum_probs=66.4
Q ss_pred hcCCCceEEEcCCCC--CC---CHHHHHHHHhhcCCeeEEEEe------------CCEEEEEEcCHHHHHHHHHhcCCCe
Q 014384 50 FEAMMRPIFCGNFEY--DA---RQSDLERLFRRYGKVDRVDMK------------SGFAFIYMDDERDAEDAIRGLDRTE 112 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~--~~---t~~~L~~lF~~~G~V~~v~i~------------kg~aFV~F~~~~~A~~A~~~lng~~ 112 (425)
...++++|+|.|+-. .+ .+++|+++|++||+|..|.|. +|+|||+|.++++|.+|+..|||..
T Consensus 16 ~~~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~ 95 (118)
T 3ue2_A 16 RKQESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRW 95 (118)
T ss_dssp HHHSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCE
Confidence 334789999999942 22 378999999999999999883 2899999999999999999999999
Q ss_pred ecCCCcEEEEEEeccc
Q 014384 113 FGRKGRRLRVEWTKHE 128 (425)
Q Consensus 113 ig~~gr~l~V~~a~~~ 128 (425)
| +|+.|.|.|+...
T Consensus 96 f--~GR~i~v~~~~~~ 109 (118)
T 3ue2_A 96 F--AGRKVVAEVYDQE 109 (118)
T ss_dssp E--TTEECEEEEECHH
T ss_pred E--CCcEEEEEEcChH
Confidence 9 8999999998653
No 362
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=1.2e-12 Score=107.81 Aligned_cols=74 Identities=18% Similarity=0.203 Sum_probs=65.5
Q ss_pred CCCcEEEEEcCCCCCCCHHHHHhhhccCCcE----EEEEEe-------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEE
Q 014384 148 RPSKTLFVINFDPYHTRTRDLERHFEPYGKI----ISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 216 (425)
Q Consensus 148 ~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v----~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 216 (425)
....+|||+|| |+.+++++|+++|++||.| ..|.|+ +|||||+|.+.++|.+||+. |+..|+|+.|.
T Consensus 21 ~~~~~v~V~nL-p~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGL-PFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSC-CTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 45689999999 8999999999999999975 466664 68999999999999999986 99999999999
Q ss_pred EEEeeeC
Q 014384 217 VEYAVRD 223 (425)
Q Consensus 217 v~~a~~~ 223 (425)
|..+...
T Consensus 99 V~~a~~~ 105 (123)
T 2dha_A 99 LFRSTAA 105 (123)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9988653
No 363
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.29 E-value=7.9e-12 Score=101.33 Aligned_cols=76 Identities=13% Similarity=0.128 Sum_probs=64.8
Q ss_pred cCCCceEEEcCCCCCC----------CHHHHHHHHhhcCCeeEEEEe----CCEEEEEEcCHHHHHHHHHhcCCCeecCC
Q 014384 51 EAMMRPIFCGNFEYDA----------RQSDLERLFRRYGKVDRVDMK----SGFAFIYMDDERDAEDAIRGLDRTEFGRK 116 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~----------t~~~L~~lF~~~G~V~~v~i~----kg~aFV~F~~~~~A~~A~~~lng~~ig~~ 116 (425)
+.++++|.|.|+=... .+++|.++|++||+|..|.|. +|||||+|.+.++|.+|+..|||..| +
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f--~ 81 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWF--A 81 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEE--T
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEE--C
Confidence 4567788888883321 246889999999999999994 79999999999999999999999999 8
Q ss_pred CcEEEEEEeccc
Q 014384 117 GRRLRVEWTKHE 128 (425)
Q Consensus 117 gr~l~V~~a~~~ 128 (425)
|+.|.|.|+...
T Consensus 82 GR~i~v~~~~~~ 93 (114)
T 3s6e_A 82 GKMITAAYVPLP 93 (114)
T ss_dssp TEECEEEEECHH
T ss_pred CEEEEEEEEcHH
Confidence 999999998643
No 364
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.29 E-value=1.9e-11 Score=108.99 Aligned_cols=71 Identities=15% Similarity=0.445 Sum_probs=64.6
Q ss_pred CcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe-------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeee
Q 014384 150 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 222 (425)
Q Consensus 150 ~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 222 (425)
.++|||+|| |..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|.+|+..++ ..|+|+.|.|.++..
T Consensus 109 ~~~l~V~nL-p~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGF-PTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECC-CTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred cCEEEecCC-CCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 579999999 8889999999999999999999986 6899999999999999998654 589999999998654
No 365
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.26 E-value=1.3e-11 Score=98.75 Aligned_cols=77 Identities=23% Similarity=0.400 Sum_probs=66.0
Q ss_pred CCCCcEEEEEcC-CCCCCC--------HHHHHhhhccCCcEEEEEEe----------ccEEEEEEcCHHHHHHHHHHcCC
Q 014384 147 TRPSKTLFVINF-DPYHTR--------TRDLERHFEPYGKIISVRIR----------RNFAFVQYEVQEDATRALDATNM 207 (425)
Q Consensus 147 ~~~~~~l~V~nl-~p~~~~--------~~~L~~~f~~~G~v~~v~~~----------~g~afV~f~~~~~A~~A~~~l~g 207 (425)
..|+.+|+|.|+ ++.... .++|+++|++||.|..|.|+ +|+|||+|.+.++|.+|++.|||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 357889999997 222222 36899999999999999995 48999999999999999999999
Q ss_pred CccCCeEEEEEEeeeC
Q 014384 208 SKLTDRVISVEYAVRD 223 (425)
Q Consensus 208 ~~~~g~~i~v~~a~~~ 223 (425)
..|+|+.|.|.++...
T Consensus 82 ~~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 82 RKFANRVVVTKYCDPD 97 (105)
T ss_dssp CEETTEECEEEEECHH
T ss_pred CEeCCCEEEEEEeCHH
Confidence 9999999999998653
No 366
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=2.2e-11 Score=98.91 Aligned_cols=70 Identities=16% Similarity=0.339 Sum_probs=58.6
Q ss_pred CCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe-----------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEE
Q 014384 147 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-----------RNFAFVQYEVQEDATRALDATNMSKLTDRVI 215 (425)
Q Consensus 147 ~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 215 (425)
....++|||+|| |..+++++|+++|.+||.|. +.++ +|||||+|.+.++|.+|++.|++ ++|..|
T Consensus 5 ~~~~~~lfVgnL-p~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~ 80 (114)
T 2dnl_A 5 SSGSRKVFVGGL-PPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLY 80 (114)
T ss_dssp SSCCCCEEEECC-CTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEE
T ss_pred CCCCCEEEEcCC-CCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEE
Confidence 345689999999 89999999999999999998 6653 57999999999999999999843 666666
Q ss_pred EEEEe
Q 014384 216 SVEYA 220 (425)
Q Consensus 216 ~v~~a 220 (425)
.+..+
T Consensus 81 ~~~~~ 85 (114)
T 2dnl_A 81 LCVSS 85 (114)
T ss_dssp EEECC
T ss_pred EeccC
Confidence 66543
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1e-10 Score=92.39 Aligned_cols=62 Identities=16% Similarity=0.235 Sum_probs=55.6
Q ss_pred CCCCHHHHHhhhccCCcEEEEEEe---ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeeeCC
Q 014384 161 YHTRTRDLERHFEPYGKIISVRIR---RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDD 224 (425)
Q Consensus 161 ~~~~~~~L~~~f~~~G~v~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~ 224 (425)
..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|..|++.+++ +.|+.|.|.|+....
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 567899999999999999999995 78999999999999999998655 679999999988754
No 368
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.16 E-value=1e-10 Score=95.39 Aligned_cols=74 Identities=19% Similarity=0.283 Sum_probs=64.2
Q ss_pred CCcEEEEEcC-CCC---CCCHHHHHhhhccCCcEEEEEEe------------ccEEEEEEcCHHHHHHHHHHcCCCccCC
Q 014384 149 PSKTLFVINF-DPY---HTRTRDLERHFEPYGKIISVRIR------------RNFAFVQYEVQEDATRALDATNMSKLTD 212 (425)
Q Consensus 149 ~~~~l~V~nl-~p~---~~~~~~L~~~f~~~G~v~~v~~~------------~g~afV~f~~~~~A~~A~~~l~g~~~~g 212 (425)
++.+|+|.|+ ++. ..-+++|++.|++||.|..|.|+ +|++||+|.+.++|.+|++.|||..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 6789999998 221 12368999999999999999885 2799999999999999999999999999
Q ss_pred eEEEEEEeee
Q 014384 213 RVISVEYAVR 222 (425)
Q Consensus 213 ~~i~v~~a~~ 222 (425)
+.|.|.|+..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999865
No 369
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.15 E-value=1.2e-10 Score=94.43 Aligned_cols=77 Identities=14% Similarity=0.228 Sum_probs=65.1
Q ss_pred CCCCcEEEEEcC-CCCCC--------CHHHHHhhhccCCcEEEEEEe----ccEEEEEEcCHHHHHHHHHHcCCCccCCe
Q 014384 147 TRPSKTLFVINF-DPYHT--------RTRDLERHFEPYGKIISVRIR----RNFAFVQYEVQEDATRALDATNMSKLTDR 213 (425)
Q Consensus 147 ~~~~~~l~V~nl-~p~~~--------~~~~L~~~f~~~G~v~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 213 (425)
..++.+|.|.|+ ++... -+++|+++|++||.|..|.|. +|++||+|.+.++|.+|++.|||..|+|+
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 456788999998 22211 135789999999999999995 68999999999999999999999999999
Q ss_pred EEEEEEeeeC
Q 014384 214 VISVEYAVRD 223 (425)
Q Consensus 214 ~i~v~~a~~~ 223 (425)
.|.|.|+...
T Consensus 84 ~i~v~~~~~~ 93 (114)
T 3s6e_A 84 MITAAYVPLP 93 (114)
T ss_dssp ECEEEEECHH
T ss_pred EEEEEEEcHH
Confidence 9999998653
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.13 E-value=7.6e-11 Score=113.53 Aligned_cols=76 Identities=16% Similarity=0.268 Sum_probs=65.6
Q ss_pred CCCCCcEEEEEcCC-CCCCCHHHHHhhhccCCcEEEEEEe--ccEEEEEEcCHHHHHHHHHHcCCCccC---Ce--EEEE
Q 014384 146 NTRPSKTLFVINFD-PYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDATNMSKLT---DR--VISV 217 (425)
Q Consensus 146 ~~~~~~~l~V~nl~-p~~~~~~~L~~~f~~~G~v~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~---g~--~i~v 217 (425)
...|+.+|||+|+. +..+++++|+++|++||.|..|.++ +|||||+|.+.++|++|++.|||..+. |. .|.|
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~ 93 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 93 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEE
Confidence 46778999999941 6789999999999999999999884 889999999999999999999999873 44 5777
Q ss_pred EEee
Q 014384 218 EYAV 221 (425)
Q Consensus 218 ~~a~ 221 (425)
.|+.
T Consensus 94 ~~~~ 97 (345)
T 3tht_A 94 NFVE 97 (345)
T ss_dssp EECS
T ss_pred EEee
Confidence 7763
No 371
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.12 E-value=5.9e-11 Score=96.55 Aligned_cols=71 Identities=14% Similarity=0.157 Sum_probs=61.0
Q ss_pred cEEEEEcC----CCCCCCHHHHHhhhccCCcEEEEEEe--------ccEEEEEEcC----HHH----HHHHHH--HcCCC
Q 014384 151 KTLFVINF----DPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEV----QED----ATRALD--ATNMS 208 (425)
Q Consensus 151 ~~l~V~nl----~p~~~~~~~L~~~f~~~G~v~~v~~~--------~g~afV~f~~----~~~----A~~A~~--~l~g~ 208 (425)
..|||+|| + ..+++++|+++|..||+|..|.+. +|||||+|.+ +++ |.+|+. .|+|.
T Consensus 3 ~kI~VgnL~~~~~-~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTT-TNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCC-CCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCC-CCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 68999999 6 677799999999999999999984 7899999996 323 788888 78999
Q ss_pred ccCCeEEEEEEeee
Q 014384 209 KLTDRVISVEYAVR 222 (425)
Q Consensus 209 ~~~g~~i~v~~a~~ 222 (425)
.|+|+.|.|.+...
T Consensus 82 ~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 82 FIMGFKFEVILNKH 95 (136)
T ss_dssp EETTEEEEEEECCT
T ss_pred eecCcEEEEEECcc
Confidence 99999999998543
No 372
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.12 E-value=1.2e-10 Score=92.90 Aligned_cols=64 Identities=19% Similarity=0.340 Sum_probs=54.3
Q ss_pred EcCCCCCCCHHHHHhhh------------ccCCcEEEEEEe-------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEE
Q 014384 156 INFDPYHTRTRDLERHF------------EPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 216 (425)
Q Consensus 156 ~nl~p~~~~~~~L~~~f------------~~~G~v~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 216 (425)
.|| +..+++++|+++| ++||.|..|.|+ +|||||+|.+.++|.+|+..|||..|+|+.|.
T Consensus 21 ~~l-~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 21 DGL-RSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred CCc-ccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 344 3445566565555 999999999996 68999999999999999999999999999999
Q ss_pred EEEe
Q 014384 217 VEYA 220 (425)
Q Consensus 217 v~~a 220 (425)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=2.7e-10 Score=92.54 Aligned_cols=75 Identities=15% Similarity=0.197 Sum_probs=65.6
Q ss_pred hcCCCceEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcC-HHHHHHHHHhcC--CCeecCCCcEEEEE
Q 014384 50 FEAMMRPIFCGNFEYD-ARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDD-ERDAEDAIRGLD--RTEFGRKGRRLRVE 123 (425)
Q Consensus 50 ~~~~~~~l~V~nL~~~-~t~~~L~~lF~~~G~V~~v~i~--kg~aFV~F~~-~~~A~~A~~~ln--g~~ig~~gr~l~V~ 123 (425)
.-.....|||+||+.. ++.++|+++|++||+|..|.+. ...|||.|.+ ..+|.+|+..|| +..| +|..+.++
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i--~g~~~~~e 91 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQL--RNKEVTWE 91 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCT--TSSSEEEE
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEE--eCcEEEEE
Confidence 3456789999999999 9999999999999999999996 4489999999 899999999996 5666 78888888
Q ss_pred Eec
Q 014384 124 WTK 126 (425)
Q Consensus 124 ~a~ 126 (425)
+..
T Consensus 92 vL~ 94 (121)
T 1owx_A 92 VLE 94 (121)
T ss_dssp ECC
T ss_pred ECC
Confidence 654
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.08 E-value=2.9e-10 Score=86.66 Aligned_cols=73 Identities=11% Similarity=0.171 Sum_probs=61.9
Q ss_pred CCceEEEcCCC----CCCCH----HHHHHHHhhcCCeeEEEEeCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEE
Q 014384 53 MMRPIFCGNFE----YDARQ----SDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 124 (425)
Q Consensus 53 ~~~~l~V~nL~----~~~t~----~~L~~lF~~~G~V~~v~i~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~ 124 (425)
+..||+|.-++ .++-. .+|.+.|.+||+|..|++..+.+||+|.+.++|.+|+. |||..| .|+.|+|.+
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~~fVtF~d~~sAlaAi~-mnG~~v--~Gr~LkV~l 82 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLS-LNGKEL--LNRTITIAL 82 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSSEEEEESSHHHHHHGGG-GTTCEE--TTEEEEEEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCCEEEEECChHHHHHHHh-cCCeEe--CCeEEEEEe
Confidence 44577776655 23333 67999999999999999998999999999999999996 999999 899999999
Q ss_pred eccc
Q 014384 125 TKHE 128 (425)
Q Consensus 125 a~~~ 128 (425)
+.+.
T Consensus 83 kt~d 86 (91)
T 2dnr_A 83 KSPS 86 (91)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8754
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=9.4e-10 Score=89.33 Aligned_cols=78 Identities=17% Similarity=0.112 Sum_probs=69.0
Q ss_pred CCCCCCCcEEEEEcCCCCC-CCHHHHHhhhccCCcEEEEEEecc--EEEEEEcC-HHHHHHHHHHcC--CCccCCeEEEE
Q 014384 144 STNTRPSKTLFVINFDPYH-TRTRDLERHFEPYGKIISVRIRRN--FAFVQYEV-QEDATRALDATN--MSKLTDRVISV 217 (425)
Q Consensus 144 ~~~~~~~~~l~V~nl~p~~-~~~~~L~~~f~~~G~v~~v~~~~g--~afV~f~~-~~~A~~A~~~l~--g~~~~g~~i~v 217 (425)
....+++..|+|+|| +.. ++.++|+++|.+||.|.+|.+..+ .|||+|.+ ..+|..|+..|| +..|+|..+.+
T Consensus 12 ~~~~~~G~il~v~~l-~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ 90 (121)
T 1owx_A 12 SLEEKIGCLLKFSGD-LDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTW 90 (121)
T ss_dssp CCSCCCCCEEEEEES-CCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEE
T ss_pred cccccCCeEEEEecC-CCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEE
Confidence 455778899999999 566 999999999999999999999865 99999999 899999999995 78899999999
Q ss_pred EEeee
Q 014384 218 EYAVR 222 (425)
Q Consensus 218 ~~a~~ 222 (425)
+....
T Consensus 91 evL~G 95 (121)
T 1owx_A 91 EVLEG 95 (121)
T ss_dssp EECCH
T ss_pred EECCC
Confidence 87544
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.05 E-value=5.9e-10 Score=84.91 Aligned_cols=77 Identities=18% Similarity=0.275 Sum_probs=64.6
Q ss_pred CCCCCcEEEEEcCCC---CCCCH----HHHHhhhccCCcEEEEEEeccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEE
Q 014384 146 NTRPSKTLFVINFDP---YHTRT----RDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 218 (425)
Q Consensus 146 ~~~~~~~l~V~nl~p---~~~~~----~~L~~~f~~~G~v~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 218 (425)
..+|..||+|.-++. ...-+ .+|.+.|.+||.|..+++..+.+||+|.+.++|.+|+. |||.+++|+.|+|.
T Consensus 3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~ 81 (91)
T 2dnr_A 3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLS-LNGKELLNRTITIA 81 (91)
T ss_dssp CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSSEEEEESSHHHHHHGGG-GTTCEETTEEEEEE
T ss_pred CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCCEEEEECChHHHHHHHh-cCCeEeCCeEEEEE
Confidence 356677888877621 11223 57899999999999999999999999999999999998 99999999999999
Q ss_pred EeeeC
Q 014384 219 YAVRD 223 (425)
Q Consensus 219 ~a~~~ 223 (425)
++.++
T Consensus 82 lkt~d 86 (91)
T 2dnr_A 82 LKSPS 86 (91)
T ss_dssp ECCCS
T ss_pred eCCCC
Confidence 98763
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=5.6e-09 Score=79.90 Aligned_cols=73 Identities=15% Similarity=0.264 Sum_probs=61.9
Q ss_pred cCCCceEEEcCCCCC-----CCH----HHHHHHHhhcCCeeEEEEeCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEE
Q 014384 51 EAMMRPIFCGNFEYD-----ARQ----SDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 121 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~-----~t~----~~L~~lF~~~G~V~~v~i~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~ 121 (425)
-.+..||+|..++.. +-. .+|.+.|.+||+|..|++...-+||+|.+.++|.+||. |||..| .|+.|+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~~fVtF~d~~sAl~AI~-ldG~~v--~Gr~L~ 88 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQMLVTFADSHSALSVLD-VDGMKV--KGRAVK 88 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTEEEEECSCSHHHHHHHH-GGGSEE--TTEEEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCcEEEEEcChHHHHHHHh-cCCeee--CCeEEE
Confidence 345678888877643 322 56899999999999999988889999999999999997 999999 899999
Q ss_pred EEEec
Q 014384 122 VEWTK 126 (425)
Q Consensus 122 V~~a~ 126 (425)
|.+..
T Consensus 89 V~~k~ 93 (95)
T 1ufw_A 89 ISGPS 93 (95)
T ss_dssp EECCC
T ss_pred EeccC
Confidence 98753
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.76 E-value=9.2e-09 Score=78.70 Aligned_cols=75 Identities=21% Similarity=0.283 Sum_probs=63.6
Q ss_pred CCCCCCcEEEEEcCCCC-----CCC---HHHHHhhhccCCcEEEEEEeccEEEEEEcCHHHHHHHHHHcCCCccCCeEEE
Q 014384 145 TNTRPSKTLFVINFDPY-----HTR---TRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVIS 216 (425)
Q Consensus 145 ~~~~~~~~l~V~nl~p~-----~~~---~~~L~~~f~~~G~v~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 216 (425)
...+|..||+|.-+++. +.. -.+|.+.|.+||.|..+++..+-+||+|.+.++|.+|+. |||.+++|+.|+
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~ 88 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQMLVTFADSHSALSVLD-VDGMKVKGRAVK 88 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTEEEEECSCSHHHHHHHH-GGGSEETTEEEE
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCcEEEEEcChHHHHHHHh-cCCeeeCCeEEE
Confidence 45678889999887321 121 156899999999999999999999999999999999998 999999999999
Q ss_pred EEEe
Q 014384 217 VEYA 220 (425)
Q Consensus 217 v~~a 220 (425)
|.+.
T Consensus 89 V~~k 92 (95)
T 1ufw_A 89 ISGP 92 (95)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9864
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.57 E-value=8.2e-08 Score=87.13 Aligned_cols=73 Identities=21% Similarity=0.279 Sum_probs=60.9
Q ss_pred CceEEEcCCCC-----CCCHHHHHHHHhhcCCeeEEEEe------------CCEEEEEEcCHHHHHHHHHhcCCCeecCC
Q 014384 54 MRPIFCGNFEY-----DARQSDLERLFRRYGKVDRVDMK------------SGFAFIYMDDERDAEDAIRGLDRTEFGRK 116 (425)
Q Consensus 54 ~~~l~V~nL~~-----~~t~~~L~~lF~~~G~V~~v~i~------------kg~aFV~F~~~~~A~~A~~~lng~~ig~~ 116 (425)
...|.+.|+-. .-.+++|.+.|++||+|..|.|. +|++||+|.+.++|.+|+..|||..| .
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~--~ 201 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF--A 201 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS--S
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE--C
Confidence 34555555532 33568999999999999999983 58999999999999999999999999 8
Q ss_pred CcEEEEEEeccc
Q 014384 117 GRRLRVEWTKHE 128 (425)
Q Consensus 117 gr~l~V~~a~~~ 128 (425)
|+.|.|.++...
T Consensus 202 gr~i~~~~~~~~ 213 (222)
T 3dxb_A 202 GRKVVAEVYDQE 213 (222)
T ss_dssp SSBCEEEECCHH
T ss_pred CeEEEEEEcCHH
Confidence 999999998643
No 380
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.52 E-value=4.7e-07 Score=70.57 Aligned_cols=71 Identities=14% Similarity=0.165 Sum_probs=65.8
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhc-----CCeeEEEEe--CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEE
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRY-----GKVDRVDMK--SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 123 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~-----G~V~~v~i~--kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~ 123 (425)
++..++|-+-|||..+++..|..|++.+ |.|..|.|- -+-|+|+|.|...|.+|.-+|||.+| .|++|+|.
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef--~gr~Lr~g 95 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQF--QGKVIRSG 95 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEE--TTEEEEEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeee--cCeEEEec
Confidence 4457899999999999999999999999 999999884 68899999999999999999999999 89999986
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.42 E-value=2.4e-06 Score=77.34 Aligned_cols=59 Identities=17% Similarity=0.241 Sum_probs=54.8
Q ss_pred CHHHHHhhhccCCcEEEEEEe------------ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeee
Q 014384 164 RTRDLERHFEPYGKIISVRIR------------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 222 (425)
Q Consensus 164 ~~~~L~~~f~~~G~v~~v~~~------------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 222 (425)
.+++|.+.|.+||.|..+.++ +|++||+|.+.++|.+|++.|||..|+|+.|.+.+...
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 478999999999999999985 47999999999999999999999999999999999865
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.18 E-value=3.8e-06 Score=65.51 Aligned_cols=69 Identities=13% Similarity=0.094 Sum_probs=63.7
Q ss_pred CcEEEEEcCCCCCCCHHHHHhhhccC-----CcEEEEEEe--ccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEE
Q 014384 150 SKTLFVINFDPYHTRTRDLERHFEPY-----GKIISVRIR--RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 219 (425)
Q Consensus 150 ~~~l~V~nl~p~~~~~~~L~~~f~~~-----G~v~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 219 (425)
..+|-+-|| |..++...|+.+++.+ |.|+.|.+. -+-|+|+|.+...|.+|.-.|+|.+|+|+.|.+.-
T Consensus 21 ~rtiaL~~i-pDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 21 ETLICLFPL-SDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TSCEEEECC-CTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CcEEEEecC-CCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 578899999 8999999999999999 999999886 56899999999999999999999999999999863
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.07 E-value=8e-06 Score=63.50 Aligned_cols=74 Identities=22% Similarity=0.257 Sum_probs=62.7
Q ss_pred CCceEEEcCCCCCC-C----HHHHHHHHhhcCCeeEEEEe--CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEe
Q 014384 53 MMRPIFCGNFEYDA-R----QSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 125 (425)
Q Consensus 53 ~~~~l~V~nL~~~~-t----~~~L~~lF~~~G~V~~v~i~--kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a 125 (425)
..++|+|+||+..| + .+.|++||..|+++....+- =.=..|.|.++++|.+|...|++..| +|+.|+|.|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f--~g~~~r~YFg 81 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEF--LGKEMKLYFA 81 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEE--TTEECEEECC
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhcccee--cCceeEEEec
Confidence 35789999998865 2 26789999999998877763 34568999999999999999999999 8999999999
Q ss_pred ccc
Q 014384 126 KHE 128 (425)
Q Consensus 126 ~~~ 128 (425)
...
T Consensus 82 q~~ 84 (104)
T 1wey_A 82 QTL 84 (104)
T ss_dssp CCS
T ss_pred CCC
Confidence 844
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.06 E-value=2.5e-05 Score=60.40 Aligned_cols=71 Identities=14% Similarity=0.076 Sum_probs=58.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhc-----CCeeEEEEeCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEe
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRY-----GKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 125 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~-----G~V~~v~i~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a 125 (425)
....+|.|.|||+.+.++.|+-+|+.- |+|..|....+-|+|+|.+.+.|+..|. -....| ++..|.|...
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~~~AvItF~d~~va~rVL~-k~~H~L--~~~~LsV~P~ 81 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLGCGGVLTFREPADAERVLA-QADHEL--HGAQLSLRPA 81 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEETTEEEEEESSHHHHHHHHT-CSCCBS--SSSBCEEEEC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcCCcEEEEEcChHHHHHHhc-CCccee--cCeEEEEEcC
Confidence 345799999999999999999999982 6899999877999999999999999983 334455 6778888654
No 385
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.87 E-value=3.8e-05 Score=58.67 Aligned_cols=58 Identities=17% Similarity=0.270 Sum_probs=50.4
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcCHHHHHHHHHhcC
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLD 109 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~kg~aFV~F~~~~~A~~A~~~ln 109 (425)
+.-.+.++| ++|+.+...||.++|..||.|.--+|.-..|||.|.+++.|..|+..++
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 334456666 9999999999999999999877677789999999999999999998774
No 386
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.74 E-value=3.5e-05 Score=59.07 Aligned_cols=54 Identities=19% Similarity=0.321 Sum_probs=47.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcCHHHHHHHHHhcC
Q 014384 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLD 109 (425)
Q Consensus 55 ~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~kg~aFV~F~~~~~A~~A~~~ln 109 (425)
+.++| ++|+.+...||.++|+.||.|.--+|.-..|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEEETTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 35666 9999999999999999999766666679999999999999999998775
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.49 E-value=0.00028 Score=53.89 Aligned_cols=59 Identities=12% Similarity=0.117 Sum_probs=52.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe----------CCEEEEEEcCHHHHHHHHHhcCCCee
Q 014384 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK----------SGFAFIYMDDERDAEDAIRGLDRTEF 113 (425)
Q Consensus 55 ~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~----------kg~aFV~F~~~~~A~~A~~~lng~~i 113 (425)
++|.|.+||+.+|++++.+.++.+.++...... -.-|||.|.+.+++....+.++|..|
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 689999999999999999999999877655542 35799999999999999999999988
No 388
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.47 E-value=0.00045 Score=55.20 Aligned_cols=73 Identities=18% Similarity=0.157 Sum_probs=59.7
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEec
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 126 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~ 126 (425)
....+-|.|-++|+.. ...|...|++||+|.+.... .....|.|.+..+|++|| ..||+.|+ .+-.|-|.+..
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL-~kNG~ii~-g~~mIGV~p~~ 95 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKAL-SKDGRIFG-ESIMIGVKPCI 95 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHH-TTTTCEET-TTEECEEEECC
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHH-HhCCeEec-CCEEEEEEECC
Confidence 3456789999999885 67888999999999998883 679999999999999999 88999993 24556666643
No 389
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.46 E-value=9.8e-05 Score=57.38 Aligned_cols=73 Identities=12% Similarity=0.103 Sum_probs=61.4
Q ss_pred CcEEEEEcCCCCCCCH----HHHHhhhccCCcEEEEEEecc--EEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeee
Q 014384 150 SKTLFVINFDPYHTRT----RDLERHFEPYGKIISVRIRRN--FAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 222 (425)
Q Consensus 150 ~~~l~V~nl~p~~~~~----~~L~~~f~~~G~v~~v~~~~g--~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 222 (425)
.++|+|.||++..-.. +.++++|..|+++....+.+. -..|.|.++++|.+|-..||+..|.|..|+|-|+..
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 4789999995433232 567899999999888877654 578999999999999999999999999999999874
No 390
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.09 E-value=0.0047 Score=47.70 Aligned_cols=72 Identities=19% Similarity=0.132 Sum_probs=60.4
Q ss_pred CCcEEEEEcCCCCCCCHHHHHhhhcc-----CCcEEEEEEeccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEeee
Q 014384 149 PSKTLFVINFDPYHTRTRDLERHFEP-----YGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 222 (425)
Q Consensus 149 ~~~~l~V~nl~p~~~~~~~L~~~f~~-----~G~v~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 222 (425)
...+|.|.|| |..+.++.|.-+|+. -|+|..+....+-|+|+|.+.+.|+..++. ....|.|..|.|.-...
T Consensus 7 ~~~~I~V~~l-Pp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~~ 83 (104)
T 2dhx_A 7 GGVAVEVRGL-PPAVPDELLTLYFENRRRSGGGPVLSWQRLGCGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAPP 83 (104)
T ss_dssp CCCEEEEESC-CTTSCHHHHHHHHHCTTTTCCCCEEEEEEETTEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECCC
T ss_pred CccEEEEECC-CCCCChhHheEEEeCCCcCCCceeeEEEEcCCcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCCC
Confidence 4579999999 778889999999986 258999998889999999999999999873 36778889998866444
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.01 E-value=0.0039 Score=47.56 Aligned_cols=55 Identities=29% Similarity=0.430 Sum_probs=47.8
Q ss_pred CcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEeccEEEEEEcCHHHHHHHHHHcC
Q 014384 150 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATN 206 (425)
Q Consensus 150 ~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~~g~afV~f~~~~~A~~A~~~l~ 206 (425)
.+.++| ++ |......||.++|+.||.|.--.|.-..|||.|.+.+.|..|+..+.
T Consensus 16 ~HVf~l-~F-P~ewKt~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TF-PKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-EC-CTTCCHHHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eC-ChhhhhHHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 456666 99 77788999999999999887778888999999999999999998763
No 392
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.89 E-value=0.0024 Score=50.92 Aligned_cols=71 Identities=20% Similarity=0.337 Sum_probs=58.3
Q ss_pred CCCCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--ccEEEEEEcCHHHHHHHHHHcCCCccCC-eEEEEEEe
Q 014384 147 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDATNMSKLTD-RVISVEYA 220 (425)
Q Consensus 147 ~~~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~i~v~~a 220 (425)
......|.|.++ |... ...|..+|++||.|.....+ .+...|.|.+..+|++||. .||..|+| ..|-|...
T Consensus 21 ~~~~~wVtVFGF-p~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 21 HLDDTWVTVFGF-PQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp CGGGGEEEEECC-CGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCCCEEEEECC-CHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 344678999999 5554 77899999999999999985 4699999999999999997 59999985 55666653
No 393
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.75 E-value=0.0022 Score=49.17 Aligned_cols=60 Identities=15% Similarity=0.099 Sum_probs=48.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe----------CCEEEEEEcCHHHHHHHHHhcCCCee
Q 014384 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK----------SGFAFIYMDDERDAEDAIRGLDRTEF 113 (425)
Q Consensus 54 ~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~----------kg~aFV~F~~~~~A~~A~~~lng~~i 113 (425)
.-+|.|..||+.+|++++.+.++.+-++...... -.-|||.|.+.+++....+.++|..|
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 4689999999999999988887765443222211 35789999999999999999999887
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.67 E-value=0.0026 Score=48.74 Aligned_cols=54 Identities=30% Similarity=0.435 Sum_probs=46.5
Q ss_pred cEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEeccEEEEEEcCHHHHHHHHHHcC
Q 014384 151 KTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATN 206 (425)
Q Consensus 151 ~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~~g~afV~f~~~~~A~~A~~~l~ 206 (425)
+.++| ++ |......||.++|..||.|.--.|--..|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~F-P~ewKt~Di~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TF-PKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-EC-CTTCCHHHHHHHTTTSEEEEEEEEETTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eC-ChhhhhHHHHHHHhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 44555 99 77777999999999999777777778899999999999999999774
No 395
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.21 E-value=0.024 Score=43.09 Aligned_cols=70 Identities=19% Similarity=0.230 Sum_probs=56.2
Q ss_pred cEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEec----------cEEEEEEcCHHHHHHHHHHcCCCccCCe-----EE
Q 014384 151 KTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRR----------NFAFVQYEVQEDATRALDATNMSKLTDR-----VI 215 (425)
Q Consensus 151 ~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~~----------g~afV~f~~~~~A~~A~~~l~g~~~~g~-----~i 215 (425)
++|.|.+| |-.+|++++.+.+..+..+....... .-|||.|.+.+++..-.+.++|..|-+. ..
T Consensus 2 ~KvVIRrL-PP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a 80 (91)
T 1uw4_A 2 SKVVIRRL-PPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPA 80 (91)
T ss_dssp CEEEEEEE-CTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEEC
T ss_pred cEEEEeCC-CCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeee
Confidence 47899999 77788999999999998877776643 3799999999999999999999877532 33
Q ss_pred EEEEee
Q 014384 216 SVEYAV 221 (425)
Q Consensus 216 ~v~~a~ 221 (425)
.|++|.
T Consensus 81 ~VE~AP 86 (91)
T 1uw4_A 81 IVEFAP 86 (91)
T ss_dssp EEEECS
T ss_pred EEEEcC
Confidence 456553
No 396
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.13 E-value=0.011 Score=47.71 Aligned_cols=72 Identities=17% Similarity=0.185 Sum_probs=54.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEE---------------------eCCEEEEEEcCHHHHHHHHHhcC
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDR-VDM---------------------KSGFAFIYMDDERDAEDAIRGLD 109 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~-v~i---------------------~kg~aFV~F~~~~~A~~A~~~ln 109 (425)
....-|.|-+.|+.. ...+.+.|++||.|.+ +.+ -.+...|.|.+..+|.+|| ..|
T Consensus 5 ~~e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~N 82 (132)
T 3p3d_A 5 NGELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LEN 82 (132)
T ss_dssp ---CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTT
T ss_pred cCceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhC
Confidence 344677888886554 5677889999999876 211 1457799999999999999 899
Q ss_pred CCeecCCCcEEEEEEecc
Q 014384 110 RTEFGRKGRRLRVEWTKH 127 (425)
Q Consensus 110 g~~ig~~gr~l~V~~a~~ 127 (425)
|..| .|..|-|.+...
T Consensus 83 G~ii--~G~mIGV~Py~~ 98 (132)
T 3p3d_A 83 GAVF--NGVLLGVIPYTK 98 (132)
T ss_dssp TCEE--TTEECEEEECCH
T ss_pred CeEe--CcEEEEEEECCH
Confidence 9999 788888876643
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.44 E-value=0.016 Score=46.78 Aligned_cols=69 Identities=16% Similarity=0.311 Sum_probs=54.8
Q ss_pred CcEEEEEcCCCCCCCHHHHHhhhccCCcEEE-EEE---------------------eccEEEEEEcCHHHHHHHHHHcCC
Q 014384 150 SKTLFVINFDPYHTRTRDLERHFEPYGKIIS-VRI---------------------RRNFAFVQYEVQEDATRALDATNM 207 (425)
Q Consensus 150 ~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~-v~~---------------------~~g~afV~f~~~~~A~~A~~~l~g 207 (425)
...|.|.++ |... ...+.+.|++||.|.+ +.+ -.+...|+|.+..+|.+||. .||
T Consensus 7 e~~VtVFGF-p~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 7 ELAILVFGY-PETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp -CEEEEECC-CGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred ceEEEEEec-CHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 457888899 6666 6788899999999876 211 13577899999999999997 699
Q ss_pred CccCCeEEEEEEee
Q 014384 208 SKLTDRVISVEYAV 221 (425)
Q Consensus 208 ~~~~g~~i~v~~a~ 221 (425)
..|+|..|-|....
T Consensus 84 ~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFNGVLLGVIPYT 97 (132)
T ss_dssp CEETTEECEEEECC
T ss_pred eEeCcEEEEEEECC
Confidence 99999888887753
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.35 E-value=0.0072 Score=60.02 Aligned_cols=55 Identities=7% Similarity=0.148 Sum_probs=42.4
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe---CCEEEEEEcCHHHHHHHHH
Q 014384 51 EAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK---SGFAFIYMDDERDAEDAIR 106 (425)
Q Consensus 51 ~~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~---kg~aFV~F~~~~~A~~A~~ 106 (425)
....++|+|. .+..+++.+|.++|.+||+|..+.+- ..||.|||.+.++|..++.
T Consensus 50 ~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 50 EQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred HHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 4456899997 79999999999999999999999983 4599999999999998773
No 399
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.22 E-value=0.089 Score=40.25 Aligned_cols=71 Identities=17% Similarity=0.176 Sum_probs=53.7
Q ss_pred CcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEec----------cEEEEEEcCHHHHHHHHHHcCCCccCC-----eE
Q 014384 150 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRR----------NFAFVQYEVQEDATRALDATNMSKLTD-----RV 214 (425)
Q Consensus 150 ~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~~----------g~afV~f~~~~~A~~A~~~l~g~~~~g-----~~ 214 (425)
.-+|.|..| |-.+|++++.+.+..+-.+....... .-|||.|.+.+++..-.+.++|..|-+ -.
T Consensus 9 ~~KvVIRrL-PP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 9 SHMVVIRRL-PPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCEEEECC-CSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred ceeEEEeCC-CCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 457999999 67777999998888766654443322 378999999999999999999977653 24
Q ss_pred EEEEEee
Q 014384 215 ISVEYAV 221 (425)
Q Consensus 215 i~v~~a~ 221 (425)
..|++|.
T Consensus 88 a~VE~AP 94 (97)
T 2l08_A 88 AVVEFAP 94 (97)
T ss_dssp EEEEECC
T ss_pred eEEEecC
Confidence 5566654
No 400
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.75 E-value=0.12 Score=52.31 Aligned_cols=56 Identities=18% Similarity=0.275 Sum_probs=49.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcCHHHHHHHHHhcCC
Q 014384 54 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDR 110 (425)
Q Consensus 54 ~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~kg~aFV~F~~~~~A~~A~~~lng 110 (425)
...++|+ ++..+...+|.++|+.||.|.-.+|....|||.|.+.+.|..|+..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~widdt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCEEEECSSSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEEcCCeEEEEECCHHHHHHHHHHHHh
Confidence 3567776 9999999999999999998777777889999999999999999998863
No 401
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=91.22 E-value=0.1 Score=51.81 Aligned_cols=51 Identities=14% Similarity=0.220 Sum_probs=38.6
Q ss_pred cEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEe--c-cEEEEEEcCHHHHHHHHH
Q 014384 151 KTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--R-NFAFVQYEVQEDATRALD 203 (425)
Q Consensus 151 ~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~--~-g~afV~f~~~~~A~~A~~ 203 (425)
..|+|. + +..+++.+|.+.|++||.|..+.+- + .||.|||.+.+++..++.
T Consensus 54 rsv~v~-~-~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-C-PEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-E-CCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred ceEEEE-c-CCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 689997 6 6778899999999999999999885 3 399999999999887765
No 402
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=87.78 E-value=5.7 Score=29.39 Aligned_cols=69 Identities=19% Similarity=0.145 Sum_probs=54.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEE
Q 014384 52 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 124 (425)
Q Consensus 52 ~~~~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~ 124 (425)
..++-|.|-|||..+-..++.-.....|---.|....|.|.|.|.+.++...|+..|-+. +...|.++.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyidgqamirfqnsdeqrlaiqkllnh----nnnklqiei 78 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDGQAMIRFQNSDEQRLAIQKLLNH----NNNKLQIEI 78 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECSSCEEEEESSHHHHHHHHHHHEET----TTTEEEEEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeecCeeEEEecCChHHHHHHHHHHhc----CCCEEEEEE
Confidence 456788899999999999888888888877778888999999999999999998765322 344555554
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=84.16 E-value=1.8 Score=31.05 Aligned_cols=60 Identities=15% Similarity=0.159 Sum_probs=40.8
Q ss_pred CCCCHHHHHhhhccCC-----cEEEEEEeccEEEEEEcCHHHHHHHHHHcCCCccCCeEEEEEEee
Q 014384 161 YHTRTRDLERHFEPYG-----KIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 221 (425)
Q Consensus 161 ~~~~~~~L~~~f~~~G-----~v~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 221 (425)
..+...+|..++..-+ .|-.|.+...|.||+-... .|..++..|++..+.|+.+.|+.+.
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMDNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECSSCEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeCCcEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 4455666666665433 5788999999999998764 4677888899999999999887654
No 404
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=83.55 E-value=2.6 Score=30.17 Aligned_cols=68 Identities=10% Similarity=0.267 Sum_probs=45.2
Q ss_pred eEEEcC-CCCCCCHHHHHHHHhhcC-----CeeEEEEeCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEec
Q 014384 56 PIFCGN-FEYDARQSDLERLFRRYG-----KVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 126 (425)
Q Consensus 56 ~l~V~n-L~~~~t~~~L~~lF~~~G-----~V~~v~i~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~ 126 (425)
+|||.. -...++..+|..++..-+ .|-.|.|...|.||+-... .|..++..|++..+ .|+.+.|+.+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~~s~v~v~~~-~~~~~~~~l~~~~i--~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDNASYVEILNG-KGPHVLKVMKNTTV--KGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSSCEEEEECTT-CHHHHHHHHTTCCC-----CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCCcEEEEECHH-HHHHHHHHhccccC--cCceEEEEECC
Confidence 455531 234677778888777654 3667888899999998765 46778889999988 89999988764
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=82.47 E-value=9.7 Score=28.15 Aligned_cols=56 Identities=13% Similarity=0.162 Sum_probs=48.3
Q ss_pred CCcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEeccEEEEEEcCHHHHHHHHHHc
Q 014384 149 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDAT 205 (425)
Q Consensus 149 ~~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~~g~afV~f~~~~~A~~A~~~l 205 (425)
.++.|.|-|+ |..+-..++.-...-.|---.|....|.|+|.|.+.++..-|+..|
T Consensus 11 qnclikiini-pqgtlkaevvlavrhlgyefycdyidgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINI-PQGTLKAEVVLAVRHLGYEFYCDYIDGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECC-CTTCCHHHHHHHHHTTCCCEEEEECSSCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEec-CCCceeeeeEEeehhcCeeEeeeeecCeeEEEecCChHHHHHHHHH
Confidence 4567889999 7888788887777888888899999999999999999999898876
No 406
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=81.90 E-value=3.2 Score=41.73 Aligned_cols=56 Identities=29% Similarity=0.414 Sum_probs=46.6
Q ss_pred CcEEEEEcCCCCCCCHHHHHhhhccCCcEEEEEEeccEEEEEEcCHHHHHHHHHHcCC
Q 014384 150 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNM 207 (425)
Q Consensus 150 ~~~l~V~nl~p~~~~~~~L~~~f~~~G~v~~v~~~~g~afV~f~~~~~A~~A~~~l~g 207 (425)
...++|+ + +..+...+|.++|+.||.|.-.++....|||.|.+.+.|..++..++.
T Consensus 440 ~~vl~v~-f-~~~~~~~~i~~~fs~fg~v~V~widdt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-F-PKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-C-CTTCCHHHHHHHGGGGCCCEEEECSSSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-C-CCCCCHHHHHHHHHhcCCEEEEEEcCCeEEEEECCHHHHHHHHHHHHh
Confidence 3566665 7 566678999999999998777777788999999999999999998853
No 407
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=66.39 E-value=0.94 Score=37.56 Aligned_cols=30 Identities=23% Similarity=0.465 Sum_probs=22.7
Q ss_pred HHHHHHHHhhcCCeeEEEEeCCEEEEEEcC
Q 014384 68 QSDLERLFRRYGKVDRVDMKSGFAFIYMDD 97 (425)
Q Consensus 68 ~~~L~~lF~~~G~V~~v~i~kg~aFV~F~~ 97 (425)
+++|.+||...|+|+.+...+||+||+..+
T Consensus 1 ~~~~~~l~~~~G~Vkwfn~~kGfGFI~~~~ 30 (148)
T 3ts2_A 1 AADEPQLLHGAGICKWFNVRMGFGFLSMTA 30 (148)
T ss_dssp -----CCEEEEEEEEEEETTTTEEEEEEEE
T ss_pred CCcccccccceeEEEEEECCCCeeEEeeCc
Confidence 357778899999999999999999999873
No 408
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.90 E-value=3.5 Score=28.64 Aligned_cols=20 Identities=20% Similarity=0.522 Sum_probs=17.3
Q ss_pred cCCeeEEEEeCCEEEEEEcC
Q 014384 78 YGKVDRVDMKSGFAFIYMDD 97 (425)
Q Consensus 78 ~G~V~~v~i~kg~aFV~F~~ 97 (425)
.|+|..|...++.|||.|+|
T Consensus 27 lGtV~kV~~~~~~ClV~FeD 46 (68)
T 2e5p_A 27 LGTIKKVDSAREVCLVQFED 46 (68)
T ss_dssp EEEEEEEETTTTEEEEEETT
T ss_pred EeEEEEEecCCcEEEEEEcc
Confidence 37888888889999999997
No 409
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=60.06 E-value=3.7 Score=29.33 Aligned_cols=21 Identities=19% Similarity=0.540 Sum_probs=18.3
Q ss_pred cCCeeEEEEeCCEEEEEEcCH
Q 014384 78 YGKVDRVDMKSGFAFIYMDDE 98 (425)
Q Consensus 78 ~G~V~~v~i~kg~aFV~F~~~ 98 (425)
.|+|..|...++.|||.|+|.
T Consensus 44 LGTI~kV~~~~e~ClV~F~D~ 64 (79)
T 2m0o_A 44 LGTIKKVDSAREVCLVQFEDD 64 (79)
T ss_dssp EEEEEEEETTTTEEEEEETTS
T ss_pred eEEEEEeccCCCEEEEEEcCC
Confidence 388998888899999999984
No 410
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=54.86 E-value=5.4 Score=27.80 Aligned_cols=19 Identities=21% Similarity=0.611 Sum_probs=16.5
Q ss_pred CCeeEEEEeCCEEEEEEcC
Q 014384 79 GKVDRVDMKSGFAFIYMDD 97 (425)
Q Consensus 79 G~V~~v~i~kg~aFV~F~~ 97 (425)
|+|..|....|.|+|.|+|
T Consensus 32 gtI~~V~~~~gtC~V~F~D 50 (66)
T 2eqj_A 32 GTIKKINILKQSCFIIFED 50 (66)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred eEEEEEccCCcEEEEEEcc
Confidence 6788777778999999987
No 411
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.64 E-value=2.5 Score=28.91 Aligned_cols=20 Identities=25% Similarity=0.511 Sum_probs=16.0
Q ss_pred CCeeEEEEeCCEEEEEEcCH
Q 014384 79 GKVDRVDMKSGFAFIYMDDE 98 (425)
Q Consensus 79 G~V~~v~i~kg~aFV~F~~~ 98 (425)
|+|..|...++.|||.|+|-
T Consensus 26 gtV~kV~~~~~~ClV~FeD~ 45 (63)
T 2e5q_A 26 GKIKRVSSSKQSCLVTFEDN 45 (63)
T ss_dssp EEECCCCSTTSEEEEEETTS
T ss_pred EEEEEEecCCCEEEEEEccC
Confidence 66777777789999999873
No 412
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=49.61 E-value=7.6 Score=26.23 Aligned_cols=20 Identities=20% Similarity=0.567 Sum_probs=17.2
Q ss_pred CCeeEEEEeCCEEEEEEcCH
Q 014384 79 GKVDRVDMKSGFAFIYMDDE 98 (425)
Q Consensus 79 G~V~~v~i~kg~aFV~F~~~ 98 (425)
|+|..|....+.|+|.|+|.
T Consensus 22 GtI~~V~~~~~~clV~F~D~ 41 (58)
T 4hcz_A 22 GTIKKVDSAREVCLVQFEDD 41 (58)
T ss_dssp EEEEEEETTTTEEEEEETTS
T ss_pred EEEEEEecCCCEEEEEEcCC
Confidence 78888888888999999974
No 413
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=48.46 E-value=44 Score=24.77 Aligned_cols=31 Identities=23% Similarity=0.489 Sum_probs=25.1
Q ss_pred eeEEEEe---CCEEEEEEcCHHHHHHHHHhcCCC
Q 014384 81 VDRVDMK---SGFAFIYMDDERDAEDAIRGLDRT 111 (425)
Q Consensus 81 V~~v~i~---kg~aFV~F~~~~~A~~A~~~lng~ 111 (425)
|..|.++ .||.||++...+++..++..+.|.
T Consensus 40 i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 40 VYSILASESLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp EEEEEECTTSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEEecccCCEEEEEEecchhHHHHHHCCCCc
Confidence 5566664 899999999999999888777664
No 414
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=47.82 E-value=4.5 Score=33.39 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=22.3
Q ss_pred HHHHhhhccCCcEEEEEEeccEEEEEEc
Q 014384 166 RDLERHFEPYGKIISVRIRRNFAFVQYE 193 (425)
Q Consensus 166 ~~L~~~f~~~G~v~~v~~~~g~afV~f~ 193 (425)
+++.++|...|.|+.+...+||+||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEETTTTEEEEEEE
T ss_pred CcccccccceeEEEEEECCCCeeEEeeC
Confidence 5677899999999999999999999976
No 415
>2yh5_A DAPX protein, BAMC; lipid binding protein, lipoprotein, BAM complex; 1.25A {Escherichia coli} PDB: 3sns_A
Probab=37.23 E-value=1.4e+02 Score=23.57 Aligned_cols=97 Identities=11% Similarity=0.106 Sum_probs=62.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeCCEEEEEEcCHHHHHHHHHhcCCCeecCCCcEEEEEEeccccCCCC
Q 014384 55 RPIFCGNFEYDARQSDLERLFRRYG-KVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRR 133 (425)
Q Consensus 55 ~~l~V~nL~~~~t~~~L~~lF~~~G-~V~~v~i~kg~aFV~F~~~~~A~~A~~~lng~~ig~~gr~l~V~~a~~~~~~~~ 133 (425)
..+.|-..+++..-.-|-..+.+.| +|++..-++|.-||.|..+++ -....|-+...........|.+....
T Consensus 14 ~p~l~l~~~fdraW~rvg~ALdr~Gf~V~Drdrs~G~y~V~Y~~~~~--gf~~~lg~~~~~~~~~~Y~i~v~~~g----- 86 (127)
T 2yh5_A 14 LPMLVVRGPFNVVWQRLPAALEKVGMKVTDSTRSQGNMAVTYKPLSD--SDWQELGASDPGLASGDYKLQVGDLD----- 86 (127)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTTEEEEEEEGGGTEEEEEECCCCH--HHHHHHTSCCCCCCSEEEEEEEEEET-----
T ss_pred CEEEEEcCCHHHHHHHHHHHHHhCCCeEEeeeccCeEEEEEeCCCCc--chHHHhcCCCccCCCCCEEEEEEeCC-----
Confidence 4566668888889999999999999 678888889999999998874 33344422222113444455443221
Q ss_pred CCCCCCCCCCCCCCCCCcEEEEEcCCCCCCCHHHHHhhhc
Q 014384 134 PGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 173 (425)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~l~V~nl~p~~~~~~~L~~~f~ 173 (425)
....|.|.+-+....+.++...++.
T Consensus 87 ---------------~~t~V~v~d~~G~p~~~~~a~~ll~ 111 (127)
T 2yh5_A 87 ---------------NRSSLQFIDPKGHTLTQSQNDALVA 111 (127)
T ss_dssp ---------------TEEEEEEECTTSCBCCHHHHHHHHH
T ss_pred ---------------CceEEEEECCCCCCCCHHHHHHHHH
Confidence 1356777666445555666555543
No 416
>2hpu_A NOSL protein; alpha beta topology, metal transport; NMR {Achromobacter cycloclastes} SCOP: d.357.1.1 PDB: 2hq3_A
Probab=37.19 E-value=28 Score=29.40 Aligned_cols=94 Identities=12% Similarity=-0.008 Sum_probs=40.5
Q ss_pred eeeeeEEEEeCC-CCcccccccCC-cceeecccccccchhhhh---hhcCCCceEEEcCCCC-CCCHHHHHHHHhhcCCe
Q 014384 8 YQCHYLLIVYSH-SVWPVQKKYLP-RRLYVLGFRRSHSQLSIA---AFEAMMRPIFCGNFEY-DARQSDLERLFRRYGKV 81 (425)
Q Consensus 8 ~~~~y~~i~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~l~V~nL~~-~~t~~~L~~lF~~~G~V 81 (425)
-.|+||-+.... ..|..|..+.. ..+. .|.......... ........|||..... ..+.+ .-+..
T Consensus 19 ~~C~~CgM~i~~~p~~~aqI~~~~~g~~~--~F~s~~cm~~~~~~~e~~~~i~aiyV~D~~t~~~~w~-------~p~~~ 89 (175)
T 2hpu_A 19 TLGHYCQMNLLEHPGPKAQIFLEGSPAPL--FFSQVRDAIAYARGPEQIAPILVIYVNDMGAAGATWD-------QPGDG 89 (175)
T ss_dssp ----------------CEEEEETTCSSEE--EESCHHHHHHHHTTGGGGSCEEEEEEEESCTTSSCTT-------CSCCC
T ss_pred ceeCCCCcCcccCCCccEEEEECCCCcEE--EECCHHHHHHHHhcccccCceeEEEEEcCcccccccc-------cCCCC
Confidence 569999987754 36666665544 2222 222222221111 1234568899987654 11111 11221
Q ss_pred eEE--------EE-----eCC-EEEEEEcCHHHHHHHHHhcCC
Q 014384 82 DRV--------DM-----KSG-FAFIYMDDERDAEDAIRGLDR 110 (425)
Q Consensus 82 ~~v--------~i-----~kg-~aFV~F~~~~~A~~A~~~lng 110 (425)
.-| .- ..| ..+|-|.+.++|++++....|
T Consensus 90 ~wIdA~~A~YVvgS~~~gpMG~~~l~pFa~k~dAe~Fa~~~GG 132 (175)
T 2hpu_A 90 NWIAADKAFYVVGSARRGGMGAPEAVPFSSRDEAAAFVLAEGG 132 (175)
T ss_dssp EEECGGGSEEEEESSSSCSSSCCCEEEESCHHHHHHHHHHTEE
T ss_pred ceEECCeeEEEeCCCCCCCCCCCcccCcCCHHHHHHHHHHcCC
Confidence 211 11 246 789999999999999976544
No 417
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=33.82 E-value=55 Score=27.46 Aligned_cols=35 Identities=17% Similarity=0.315 Sum_probs=25.9
Q ss_pred CCHHHHHHHH--hhcCCeeEEEE-----eCCEEEEEEcCHHH
Q 014384 66 ARQSDLERLF--RRYGKVDRVDM-----KSGFAFIYMDDERD 100 (425)
Q Consensus 66 ~t~~~L~~lF--~~~G~V~~v~i-----~kg~aFV~F~~~~~ 100 (425)
....+|.+.| ..|.++.-..+ ..|+|.|+|..--.
T Consensus 33 ~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 33 ESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWN 74 (172)
T ss_dssp CCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHH
T ss_pred CCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChH
Confidence 3457899977 88988765555 47899999996443
No 418
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=33.47 E-value=77 Score=23.38 Aligned_cols=31 Identities=13% Similarity=0.292 Sum_probs=25.4
Q ss_pred cEEEEEEe---ccEEEEEEcCHHHHHHHHHHcCC
Q 014384 177 KIISVRIR---RNFAFVQYEVQEDATRALDATNM 207 (425)
Q Consensus 177 ~v~~v~~~---~g~afV~f~~~~~A~~A~~~l~g 207 (425)
.|..+.++ .||.||++...++...++..+.|
T Consensus 39 ~i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 39 DVYSILASESLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp CEEEEEECTTSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred cEEEEEEecccCCEEEEEEecchhHHHHHHCCCC
Confidence 36667665 89999999999999998887665
No 419
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=32.78 E-value=19 Score=25.14 Aligned_cols=18 Identities=33% Similarity=0.577 Sum_probs=14.3
Q ss_pred CCeeEEEEeCCEEEEEEcCH
Q 014384 79 GKVDRVDMKSGFAFIYMDDE 98 (425)
Q Consensus 79 G~V~~v~i~kg~aFV~F~~~ 98 (425)
|+| |...+..|||.|+|.
T Consensus 34 GtI--Vd~~~~~ClV~FeD~ 51 (69)
T 2xk0_A 34 GTI--IDQTSDQYLIRFDDQ 51 (69)
T ss_dssp EEE--EEECSSCEEEEETTC
T ss_pred EEE--EecCCceEEEEecCC
Confidence 666 566799999999984
No 420
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=31.86 E-value=91 Score=21.04 Aligned_cols=52 Identities=4% Similarity=-0.014 Sum_probs=39.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcCHHHHHHHHHh
Q 014384 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRG 107 (425)
Q Consensus 55 ~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i~--kg~aFV~F~~~~~A~~A~~~ 107 (425)
.+|.|.++.-.-=...|+..+.. .-|..+.+. .+.+.|+|.+.++...|+..
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEECCHHHHHHHHHH
Confidence 57888888776677889999998 778777774 57888888856666667643
No 421
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=24.76 E-value=45 Score=25.18 Aligned_cols=49 Identities=18% Similarity=0.327 Sum_probs=40.0
Q ss_pred CCCCCHHHHHhhh-ccCCcEEEEEEeccEEEEEEcCHHHHHHHHHHcCCC
Q 014384 160 PYHTRTRDLERHF-EPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMS 208 (425)
Q Consensus 160 p~~~~~~~L~~~f-~~~G~v~~v~~~~g~afV~f~~~~~A~~A~~~l~g~ 208 (425)
+..+.-++|.+.. ..||.-.++.....-..|-..+++|..+||+.|+-.
T Consensus 25 ~RPv~f~eL~~Kv~~~fGq~ldL~y~n~EllIpl~sQeDLDkaIellDrs 74 (103)
T 2cu1_A 25 PRPVKLEDLRSKAKIAFGQSMDLHYTNNELVIPLTTQDDLDKAVELLDRS 74 (103)
T ss_dssp ESSCCHHHHHHHHHHHHSSCEEEEECSSSSCEECCSHHHHHHHHHHHHHC
T ss_pred cCCccHHHHHHHHHHHhCCeeeEEEecceEEEeccCHHHHHHHHHHHccC
Confidence 4556677776655 568998999888888999999999999999988654
No 422
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=24.21 E-value=27 Score=24.24 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=15.7
Q ss_pred cCCeeEEEEeCCEEEEEEcC
Q 014384 78 YGKVDRVDMKSGFAFIYMDD 97 (425)
Q Consensus 78 ~G~V~~v~i~kg~aFV~F~~ 97 (425)
.|+|+.....+||+||+=.+
T Consensus 3 ~G~Vk~fn~~kGfGFI~~~~ 22 (67)
T 3cam_A 3 TGIVKWFNDAKGFGFITPDE 22 (67)
T ss_dssp EEEEEEEETTTTEEEEEETT
T ss_pred CEEEEEEECCCCeEEEecCC
Confidence 37777777789999999664
No 423
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=23.63 E-value=34 Score=24.37 Aligned_cols=21 Identities=24% Similarity=0.388 Sum_probs=16.4
Q ss_pred cCCeeEEEEeCCEEEEEEcCH
Q 014384 78 YGKVDRVDMKSGFAFIYMDDE 98 (425)
Q Consensus 78 ~G~V~~v~i~kg~aFV~F~~~ 98 (425)
.|+|+.....+||+||+=.+-
T Consensus 4 ~G~Vkwfn~~KGfGFI~~~dg 24 (74)
T 2k5n_A 4 NGTITTWFKDKGFGFIKDENG 24 (74)
T ss_dssp EEEEEEEETTTTEEEEEESSS
T ss_pred ceEEEEEECCCCeEEEecCCC
Confidence 377777777899999997653
No 424
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=23.18 E-value=1.1e+02 Score=22.84 Aligned_cols=48 Identities=17% Similarity=0.318 Sum_probs=39.8
Q ss_pred CCCCCHHHHHhhh-ccCCcEEEEEEeccEEEEEEcCHHHHHHHHHHcCC
Q 014384 160 PYHTRTRDLERHF-EPYGKIISVRIRRNFAFVQYEVQEDATRALDATNM 207 (425)
Q Consensus 160 p~~~~~~~L~~~f-~~~G~v~~v~~~~g~afV~f~~~~~A~~A~~~l~g 207 (425)
+..+.-++|.+.. ..||.-.++....+--.|-..+++|..+|++.|+-
T Consensus 37 ~RPv~f~el~~kv~~afGq~ldl~y~nnEL~iPL~~Q~DLDkAvelLDr 85 (100)
T 2npt_B 37 PRPVKLEDLRSKAKIAFGQSMDLHYTNNELVIPLTTQDDLDKAVELLDR 85 (100)
T ss_dssp CSSCCHHHHHHHHHHHHTSCEEEEEEETTEEEECCCHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHhCCeeeeEEecceeEEecccHHHHHHHHHHhcc
Confidence 4566677877665 46999999999988889999999999999998754
No 425
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=22.80 E-value=30 Score=24.48 Aligned_cols=20 Identities=25% Similarity=0.567 Sum_probs=15.9
Q ss_pred cCCeeEEEEeCCEEEEEEcC
Q 014384 78 YGKVDRVDMKSGFAFIYMDD 97 (425)
Q Consensus 78 ~G~V~~v~i~kg~aFV~F~~ 97 (425)
.|+|+.+.-.+||+||+-.+
T Consensus 3 ~G~Vk~fn~~kGfGFI~~~~ 22 (73)
T 3a0j_A 3 KGRVKWFNAEKGYGFIEREG 22 (73)
T ss_dssp EEEEEEEETTTTEEEEECTT
T ss_pred CEEEEEEECCCCEEEEecCC
Confidence 37777777789999998665
No 426
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=22.54 E-value=85 Score=23.97 Aligned_cols=32 Identities=16% Similarity=0.365 Sum_probs=26.0
Q ss_pred eeEEEEe---CCEEEEEEcCHHHHHHHHHhcCCCe
Q 014384 81 VDRVDMK---SGFAFIYMDDERDAEDAIRGLDRTE 112 (425)
Q Consensus 81 V~~v~i~---kg~aFV~F~~~~~A~~A~~~lng~~ 112 (425)
|..|... +||-|||=..+.++..|+..+.+..
T Consensus 41 I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 41 IKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCEEEECTTCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred eEEEEecCCCceEEEEEeCCHHHHHHHHhccccee
Confidence 6666663 9999999999999999997776543
No 427
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=22.39 E-value=31 Score=23.81 Aligned_cols=19 Identities=47% Similarity=0.809 Sum_probs=15.3
Q ss_pred CCeeEEEEeCCEEEEEEcC
Q 014384 79 GKVDRVDMKSGFAFIYMDD 97 (425)
Q Consensus 79 G~V~~v~i~kg~aFV~F~~ 97 (425)
|+|+.....+||+||.-.+
T Consensus 3 G~Vk~fn~~kGfGFI~~~~ 21 (66)
T 1g6p_A 3 GKVKWFDSKKGYGFITKDE 21 (66)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred EEEEEEECCCCEEEEecCC
Confidence 6777777789999999765
No 428
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=22.15 E-value=38 Score=24.10 Aligned_cols=20 Identities=35% Similarity=0.383 Sum_probs=16.0
Q ss_pred CCeeEEEEeCCEEEEEEcCH
Q 014384 79 GKVDRVDMKSGFAFIYMDDE 98 (425)
Q Consensus 79 G~V~~v~i~kg~aFV~F~~~ 98 (425)
|+|+.....+||+||+-.+-
T Consensus 3 G~Vkwfn~~KGfGFI~~~dG 22 (74)
T 2kcm_A 3 GKVVSYLAAKKYGFIQGDDG 22 (74)
T ss_dssp EEEEEEETTTTEEEEEETTS
T ss_pred EEEEEEECCCCEEEEecCCC
Confidence 67777777899999997764
No 429
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=21.85 E-value=1.6e+02 Score=19.21 Aligned_cols=51 Identities=14% Similarity=0.134 Sum_probs=35.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--eCCEEEEEEcC---HHHHHHHH
Q 014384 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--KSGFAFIYMDD---ERDAEDAI 105 (425)
Q Consensus 55 ~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--~kg~aFV~F~~---~~~A~~A~ 105 (425)
.++.|.|+.-..-...|+..+....-|..+.+ ..+-+.|.|.. .++..+|+
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i 59 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAV 59 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTCCHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHH
Confidence 46778777766567888999998877876666 47888999853 33444454
No 430
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=21.06 E-value=38 Score=27.72 Aligned_cols=20 Identities=25% Similarity=0.245 Sum_probs=16.5
Q ss_pred cCCeeEEEEeCCEEEEEEcC
Q 014384 78 YGKVDRVDMKSGFAFIYMDD 97 (425)
Q Consensus 78 ~G~V~~v~i~kg~aFV~F~~ 97 (425)
.|+|+.+...+||+||+-.+
T Consensus 64 ~GtVKwFn~~KGfGFI~~dd 83 (147)
T 3aqq_A 64 KGVCKCFCRSKGHGFITPAD 83 (147)
T ss_dssp EEEEEEEETTTTEEEEEESS
T ss_pred ceEEEEEeCCCCeEEeccCC
Confidence 47777777789999999875
No 431
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=20.45 E-value=1.9e+02 Score=19.07 Aligned_cols=53 Identities=15% Similarity=0.138 Sum_probs=38.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--eCCEEEEEEc----CHHHHHHHHHh
Q 014384 55 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--KSGFAFIYMD----DERDAEDAIRG 107 (425)
Q Consensus 55 ~~l~V~nL~~~~t~~~L~~lF~~~G~V~~v~i--~kg~aFV~F~----~~~~A~~A~~~ 107 (425)
.+|.|.++.-.-=...|+..+....-|..+.+ ..+.+.|+|. +.++...|+..
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 62 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIED 62 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 46778787765557788999998877776665 5788999995 44566666643
No 432
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=20.09 E-value=37 Score=24.45 Aligned_cols=20 Identities=30% Similarity=0.725 Sum_probs=15.4
Q ss_pred cCCeeEEEEeCCEEEEEEcC
Q 014384 78 YGKVDRVDMKSGFAFIYMDD 97 (425)
Q Consensus 78 ~G~V~~v~i~kg~aFV~F~~ 97 (425)
.|+|+...-.+||+||+=.+
T Consensus 10 ~G~Vkwfn~~kGfGFI~~~~ 29 (79)
T 1h95_A 10 LGTVKWFNVRNGYGFINRND 29 (79)
T ss_dssp EEEEEEEETTTTEEEEEEGG
T ss_pred ceEEEEEECCCCcEEEecCC
Confidence 37777777779999999654
No 433
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=20.03 E-value=1.2e+02 Score=22.28 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=39.2
Q ss_pred CCCCCHHHHHhhh-ccCCcEEEEEEeccEEEEEEcCHHHHHHHHHHcCC
Q 014384 160 PYHTRTRDLERHF-EPYGKIISVRIRRNFAFVQYEVQEDATRALDATNM 207 (425)
Q Consensus 160 p~~~~~~~L~~~f-~~~G~v~~v~~~~g~afV~f~~~~~A~~A~~~l~g 207 (425)
+..+.-++|.+.. ..||.-.++....+--.|-..+++|..+|++.|+-
T Consensus 21 ~RPvkf~dl~qkv~~afGq~ldl~y~nnEL~iPL~~Q~DLDkAvelLDr 69 (94)
T 2jrh_A 21 SRPVKYEDVEHKVTTVFGQPLDLHYMNNELSILLKNQDDLDKAIDILDR 69 (94)
T ss_dssp CSSCCHHHHHHHHHHHHCSSEEEEEECSSCEEECCSHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHhCCeeeeEEecceeEEeccCHHHHHHHHHHhcc
Confidence 4556677777655 46999999999888888999999999999998754
Done!