BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014385
(425 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q86KZ2|TF2H2_DICDI General transcription factor IIH subunit 2 OS=Dictyostelium
discoideum GN=gtf2h2 PE=3 SV=2
Length = 461
Score = 340 bits (871), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 175/423 (41%), Positives = 259/423 (61%), Gaps = 27/423 (6%)
Query: 2 TNSERKRLN--------GEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLR 53
N++ KR N G A + +++D N WE + +++W + EDE G LR
Sbjct: 8 NNAQNKRTNRSLYDDEDGPAHVLQTNDEDGTNKY--KWENRF--EKTWLTIDEDEHG-LR 62
Query: 54 PIDNSAFYHAQYRRRLRDRS-LVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVV 112
P + R + +DR +++ R+++G+ R+L +++DLS+ + D +PSR V+
Sbjct: 63 PSNQEERNTRNRRLKNKDRDGILSQDQRVRRGMQRHLCLILDLSKTLSNQDLKPSRYQVL 122
Query: 113 AKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQ 172
+ VE F++EFFDQNP+SQ+ ++ K+ A +++L G+ HI+A+ + G+ S+Q
Sbjct: 123 LQNVELFIKEFFDQNPISQLSIIITKNSKAEKISELSGNRLRHIQAMKDAIAMEGEPSIQ 182
Query: 173 NALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMF 232
N+L++ L +P YG REVL ++S+L+TCDP + +TIQ K IR S I ++AE++
Sbjct: 183 NSLEVALSSLCYVPKYGSREVLFIFSSLTTCDPSSLQKTIQSLKNESIRVSFIHMAAELY 242
Query: 233 ICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISI 292
ICK + + T G+ V L+E HF E +M PPP I + A L++MGFPQ+ S
Sbjct: 243 ICKAIAEQTNGTSKVILNEEHFNESLMLKCQPPPTIGKTEAA-LVEMGFPQQITSTVPSP 301
Query: 293 CSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTP 352
C CH+++K GY CPRC + CELPTDC+IC L LVSSPHLARSYHHLF I F+EV
Sbjct: 302 CICHEKMKYS-GYICPRCGVKSCELPTDCQICNLSLVSSPHLARSYHHLFQIPLFNEVNW 360
Query: 353 LCLNDPRNRSRSTCFGCQQSLLSSGNKP--GLYVACPKCKKHFCLECDIYIHESLHNCPG 410
LN TC GC LSS K L+ +CP+C++ FCL+CD++IHESLHNCPG
Sbjct: 361 KELN-----KNVTCIGC----LSSSEKSILSLFFSCPRCQEIFCLDCDLFIHESLHNCPG 411
Query: 411 CES 413
CE+
Sbjct: 412 CEN 414
>sp|Q2TBV5|TF2H2_BOVIN General transcription factor IIH subunit 2 OS=Bos taurus GN=GTF2H2
PE=2 SV=1
Length = 395
Score = 322 bits (824), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 168/394 (42%), Positives = 243/394 (61%), Gaps = 32/394 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P HI +L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
+ I+ K +KIR S+IGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA
Sbjct: 183 YDLIKSLKAAKIRVSIIGLSAEVRVCTALARETGGTYHVILDESHYKELLTHHVSPPPAS 242
Query: 269 AEFAIANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCEL 317
+ + +LI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SN-SECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCEL 301
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P +C+ICGL LVS+PHLARSYHHLFP+ F E+ PL + N R C+ CQ L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-PL---EEHNGER-FCYACQGEL---- 352
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
+YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 KDQHVYV-CSVCQNVFCVDCDVFVHDSLHCCPGC 385
>sp|A0JN27|TF2H2_RAT General transcription factor IIH subunit 2 OS=Rattus norvegicus
GN=Gtf2h2 PE=2 SV=1
Length = 396
Score = 320 bits (819), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 168/396 (42%), Positives = 243/396 (61%), Gaps = 35/396 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P HI +L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
+ I+ K +KIR SVIGLSAE+ +C L ++TGG+Y V LDE+H+KEL+ H PPPA
Sbjct: 183 YDLIKTLKTAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDETHYKELLARHVSPPPA- 241
Query: 269 AEFAIANLIKMGFPQRA--------GEGSISIC-----SCHKEVKVGVGYTCPRCKARVC 315
+ + +LI+MGFPQ + S S+ S + +G GY CP+C+A+ C
Sbjct: 242 SSGSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDNNSTEPGLTLG-GYFCPQCRAKYC 300
Query: 316 ELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLS 375
ELP +C+ICGL LVS+PHLARSYHHLFP+ F E+ PL + C+GCQ L
Sbjct: 301 ELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-PL----EEYKGERFCYGCQGEL-- 353
Query: 376 SGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
+YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 354 --KDQHVYV-CTVCRNVFCVDCDVFVHDSLHCCPGC 386
>sp|O74995|TFH47_SCHPO TFIIH basal transcription factor complex p47 subunit
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tfh47 PE=1 SV=1
Length = 421
Score = 319 bits (817), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 174/422 (41%), Positives = 244/422 (57%), Gaps = 28/422 (6%)
Query: 2 TNSERKRLNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFY 61
+ SE ++ NG + DDN WE Y RSW+ +QED G L +
Sbjct: 13 SESEDEQKNGRVKVRSRKTDDNEG---YTWEGEY--QRSWDIVQEDAEGSLVGVIAGLIQ 67
Query: 62 HAQYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVR 121
+ +R LRD T +Q+G+IR++ +V+DLS + E DF R + K FV
Sbjct: 68 SGKRKRLLRD------TTPLQRGIIRHMVLVLDLSNSMEERDFHHKRFDLQIKYASEFVL 121
Query: 122 EFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGL 181
EFF+QNP+SQ+ ++ V DG+A+ +TDL G+P+SHI+ L CSG+ SLQNAL++ +
Sbjct: 122 EFFEQNPISQLSIIGVMDGIAHRITDLHGNPQSHIQKLKSLRDCSGNFSLQNALEMARAS 181
Query: 182 LSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDT 241
LS I S+G REVLI++ ++ + DPGDI +TI IR ++GL+AE+ ICK +C T
Sbjct: 182 LSHIASHGTREVLIIFGSILSSDPGDIFKTIDALVHDSIRVRIVGLAAEVAICKEICNKT 241
Query: 242 GGS----YSVALDESHFKELIMEHAPPPPA-IAEFAIANLIKMGFPQRAGEGSISICSCH 296
S Y V + E HF+EL++E PP A+ A+L+ MGFP + E S+C+CH
Sbjct: 242 NSSTKNAYGVVISEQHFRELLLESTIPPATDSAKTTDASLVMMGFPSKVVEQLPSLCACH 301
Query: 297 KEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLN 356
G G+ CPRCKA+VC LP +C C L L+ S HLARSYHHLFP+ + E+ P N
Sbjct: 302 SIPSRG-GFHCPRCKAKVCTLPIECPSCSLVLILSTHLARSYHHLFPLKNWSEI-PWSAN 359
Query: 357 DPRNRSRSTCFGCQQSLLSSGNKP------GLYVACPKCKKHFCLECDIYIHESLHNCPG 410
P++ + CF CQ P + ACP CK HFCL+CD++ HE LH C G
Sbjct: 360 -PKS---THCFACQLPFPKPPVSPFDESTSSMRYACPSCKNHFCLDCDVFAHEQLHECYG 415
Query: 411 CE 412
C+
Sbjct: 416 CQ 417
>sp|Q13888|TF2H2_HUMAN General transcription factor IIH subunit 2 OS=Homo sapiens
GN=GTF2H2 PE=1 SV=1
Length = 395
Score = 310 bits (794), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 170/394 (43%), Positives = 243/394 (61%), Gaps = 32/394 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P HI +L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
+ I+ K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA
Sbjct: 183 YDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPAS 242
Query: 269 AEFAIANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCEL 317
+ +LI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCEL 301
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P +C+ICGL LVS+PHLARSYHHLFP+ F E+ PL + N R C+GCQ L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-PL---EEYNGER-FCYGCQGEL---- 352
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
+YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 KDQHVYV-CAVCQNVFCVDCDVFVHDSLHCCPGC 385
>sp|Q6P1K8|T2H2L_HUMAN General transcription factor IIH subunit 2-like protein OS=Homo
sapiens GN=GTF2H2C PE=2 SV=1
Length = 395
Score = 310 bits (793), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 170/394 (43%), Positives = 243/394 (61%), Gaps = 32/394 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P HI +L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKEAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
+ I+ K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA
Sbjct: 183 YDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHLSPPPAS 242
Query: 269 AEFAIANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCEL 317
+ +LI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCEL 301
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P +C+ICGL LVS+PHLARSYHHLFP+ F E+ PL + N R C+GCQ L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-PL---EEYNGER-FCYGCQGEL---- 352
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
+YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 KDQHVYV-CAVCQNVFCVDCDVFVHDSLHCCPGC 385
>sp|Q9JIB4|TF2H2_MOUSE General transcription factor IIH subunit 2 OS=Mus musculus
GN=Gtf2h2 PE=1 SV=1
Length = 396
Score = 306 bits (784), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 165/396 (41%), Positives = 241/396 (60%), Gaps = 35/396 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDE+G L+ + A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDETGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P HI +L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
+ I+ K +KIR SVIGLSAE+ +C L ++TGG+Y V LDE+H+KEL+ H PPPA
Sbjct: 183 YDLIKTLKTAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDETHYKELLAHHVSPPPAS 242
Query: 269 AEFAIANLIKMGFPQRA--------GEGSISIC-----SCHKEVKVGVGYTCPRCKARVC 315
+ +LI+MGFPQ + S S+ S + +G GY CP+C+A+ C
Sbjct: 243 SSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDNNSTEPGLTLG-GYFCPQCRAKYC 300
Query: 316 ELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLS 375
ELP +C+ICGL LVS+PHLARSYHHLFP+ F E++ + C+GCQ L
Sbjct: 301 ELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEISL-----EEYKGERFCYGCQGEL-- 353
Query: 376 SGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
+YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 354 --KDQHVYV-CTVCQNVFCVDCDVFVHDSLHCCPGC 386
>sp|Q04673|SSL1_YEAST Suppressor of stem-loop protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SSL1 PE=1 SV=1
Length = 461
Score = 301 bits (772), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 168/401 (41%), Positives = 234/401 (58%), Gaps = 27/401 (6%)
Query: 25 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKG 84
NGG AWE RSW+ ++ D+ G D ++ + R + R+ Q+G
Sbjct: 71 NGGY-AWEDEIK--RSWDLVKVDDEG-----DMASLVASIVEAR-KKRTAKKNITPYQRG 121
Query: 85 LIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 144
+IR L + +D S A E D RP+R A++ + FV EFFDQNP+SQ+G++ +++G+A
Sbjct: 122 IIRSLILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQL 181
Query: 145 LTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALST 202
++ + G+P+ HI AL + K G+ SLQNAL++ +GLL +P++ REVLI++ +LST
Sbjct: 182 VSQVSGNPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVFGSLST 241
Query: 203 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELI 258
DPGDI +TI KIR V+GLSA++ ICK LC+ T Y + LDE+H KEL
Sbjct: 242 TDPGDIHQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHLKELF 301
Query: 259 MEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELP 318
E P P L+KMGFP R E + + CSCH ++ G GY CP C ++VC LP
Sbjct: 302 NEAVTPLPVNKINKGFTLVKMGFPTRIFEDTPTFCSCHSKLVYG-GYFCPNCHSKVCSLP 360
Query: 319 TDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL-LSSG 377
T C C L L+ S HLARSYHHL P+ F EV + RS CF CQ +
Sbjct: 361 TVCPCCDLMLILSTHLARSYHHLMPLKTFAEVP----TTEKFRSED-CFSCQSRFPILKN 415
Query: 378 NKPGLYVA-----CPKCKKHFCLECDIYIHESLHNCPGCES 413
+K G + C CK+ FC++CD++IHE LHNCPGCES
Sbjct: 416 HKNGKLLTSSRYRCEDCKQEFCVDCDVFIHEILHNCPGCES 456
>sp|P34567|TF2H2_CAEEL General transcription factor IIH subunit 2 OS=Caenorhabditis
elegans GN=T16H12.4 PE=3 SV=3
Length = 376
Score = 270 bits (689), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 158/397 (39%), Positives = 224/397 (56%), Gaps = 28/397 (7%)
Query: 20 EDDNLNGGLEAWERSYADDRSW-EALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATT 78
+DD G WE YA+ + + L EDE G + + A Y A +R+ R L
Sbjct: 2 DDDEQKG--YTWEAGYAEGLNINDVLVEDEGGSIE--KSIAKYVADSKRKAR---LTKRP 54
Query: 79 ARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVK 138
RI+ G++R++ IVID SR PSR VV K ++ F+ FF+QNP++QIGL+T K
Sbjct: 55 ERIRLGIMRHVMIVIDCSRFMTSKAMPPSRFVVVMKALQTFLDRFFEQNPIAQIGLITCK 114
Query: 139 DGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLIL 196
D A+ LT + G+ ++L + + C GD SLQNAL L L +P + REV+++
Sbjct: 115 DRKADRLTMMTGNIRVLKESLNTLTEAFCGGDFSLQNALQLACANLKGMPGHVSREVVLV 174
Query: 197 YSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKE 256
SALST DPG+I TI+ K IRCS IGLSAEMF+CK + + T G YSVALD H +
Sbjct: 175 ISALSTIDPGNIYSTIETMKRMNIRCSAIGLSAEMFVCKEMAKATKGEYSVALDPDHLQL 234
Query: 257 LIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVK--VGVGYTCPRCKARV 314
L +H PP + A+ + N I +GFP + S C CH + K G+ C +C AR
Sbjct: 235 LFSKHTLPPSS-AKSSECNAIHVGFPHHELITTRSFCVCHPDTKPISSRGFICTQCGARH 293
Query: 315 CELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLL 374
C +P +C +C L LV++P LAR++ HL P++ F+++ +R C+ C+ L
Sbjct: 294 CSIPAECPVCKLTLVAAPQLARAFRHLQPLSAFEQI---------EVTRGFCYACETRLS 344
Query: 375 SSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
G + C C+ FCL+CD +HESLH CPGC
Sbjct: 345 GEGFR------CGSCQLVFCLDCDTLLHESLHVCPGC 375
>sp|O74366|TFB4_SCHPO RNA polymerase II transcription factor B subunit 4
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tfb4 PE=1 SV=1
Length = 297
Score = 32.7 bits (73), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 271 FAIANLIK-MGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLV 329
F NL K + P +A + C CHK+V + +G+ C C + CE C C +
Sbjct: 229 FPDQNLRKHLNTPNQANVDFRATCFCHKKV-LDIGFVCSVCLSIFCEPRVHCSTCHTKFT 287
Query: 330 SSPHLARSYH 339
P +++ H
Sbjct: 288 VEP-MSKKLH 296
>sp|Q9NYT6|ZN226_HUMAN Zinc finger protein 226 OS=Homo sapiens GN=ZNF226 PE=1 SV=2
Length = 803
Score = 32.3 bits (72), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 9/97 (9%)
Query: 310 CKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC 369
CK E P +C CG + HL PF C ++ SR++
Sbjct: 354 CKVHTAEKPYNCEECGRAFSQASHLQDHQRLHTGEKPFK-----CDACGKSFSRNSHLQS 408
Query: 370 QQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLH 406
Q + +G KP C +C K F ++YIH+ +H
Sbjct: 409 HQRV-HTGEKP---YKCEECGKGFICSSNLYIHQRVH 441
>sp|Q7MLE8|ASTE_VIBVY Succinylglutamate desuccinylase OS=Vibrio vulnificus (strain YJ016)
GN=astE PE=3 SV=1
Length = 342
Score = 32.3 bits (72), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 90 YIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPL 129
+I +L+R E + +PS+ V+A Q++ V+ FFD P+
Sbjct: 107 FIEENLNRLFDEKEHQPSKELVIADQLKLLVKAFFDNTPV 146
>sp|Q8D926|ASTE_VIBVU Succinylglutamate desuccinylase OS=Vibrio vulnificus (strain CMCP6)
GN=astE PE=3 SV=2
Length = 342
Score = 32.3 bits (72), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 90 YIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPL 129
+I +L+R E + +PS+ V+A Q++ V+ FFD P+
Sbjct: 107 FIEENLNRLFDEKEHQPSKELVIADQLKLLVKAFFDNTPV 146
>sp|Q86IB5|TF2H3_DICDI General transcription factor IIH subunit 3 OS=Dictyostelium
discoideum GN=gtf2h3 PE=3 SV=1
Length = 372
Score = 32.0 bits (71), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 279 MGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQL 328
+ +P + C CHK + V +GY C C + C + C CG +
Sbjct: 296 LAYPTLKSVDYRASCFCHKRI-VDIGYVCSVCLSIFCGHSSSCSTCGTKF 344
>sp|Q7NA83|ASNA_PHOLL Aspartate--ammonia ligase OS=Photorhabdus luminescens subsp.
laumondii (strain TT01) GN=asnA PE=3 SV=1
Length = 330
Score = 32.0 bits (71), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 108 RMAVVAKQVE-AFVREFFDQNPLSQIGLVTVKDGVANCLTD-LGGSPESHIKALMGKLGC 165
+ + + KQ + +FV+ FF + S++GL+ V+ + +CL D + + H KA+ K+
Sbjct: 2 KKSFIEKQQQISFVKSFFSRLLESKLGLIEVQGPILSCLGDGIQDNLSGHEKAVQVKVKT 61
Query: 166 SGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDP 205
DS+ + L + + +G + LY+ + P
Sbjct: 62 LPDSTFEVVHSLAKWKRRTLGRFGFQPEQGLYTHMKALRP 101
>sp|Q0VCC5|REPI1_BOVIN Replication initiator 1 OS=Bos taurus GN=REPIN1 PE=2 SV=1
Length = 559
Score = 32.0 bits (71), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 15/103 (14%)
Query: 316 ELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLS 375
E P C CG + HLA P PF V P C R++ + +
Sbjct: 420 ERPFACEECGRRFSQGSHLAAHRRDHAPERPF--VCPDCGKAFRHKP----YLAAHRRIH 473
Query: 376 SGNKPGLYVACPKCKKHFCLECDIYIHESLHN------CPGCE 412
+G KP YV CP+C K F + ++ H +H CP C+
Sbjct: 474 TGEKP--YV-CPECGKAFSQKSNLVSHRRIHTGERPYACPDCD 513
>sp|Q68H95|REPI1_RAT Replication initiator 1 OS=Rattus norvegicus GN=Repin1 PE=2 SV=1
Length = 548
Score = 32.0 bits (71), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 54/148 (36%), Gaps = 16/148 (10%)
Query: 271 FAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVS 330
F + +++ Q GE + C K + + E P C CG +
Sbjct: 365 FRLERFLRLHQRQHTGERPFTCTECGKNFGKKT-HLVAHSRVHSGERPFACEECGRRFSQ 423
Query: 331 SPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCK 390
HLA P PF V P C R++ + + +G KP YV CP C
Sbjct: 424 GSHLAAHRRDHAPERPF--VCPDCGKAFRHKP----YLAAHRRIHTGEKP--YV-CPDCG 474
Query: 391 KHFCLECDIYIHESLHN------CPGCE 412
K F + ++ H +H CP C+
Sbjct: 475 KAFSQKSNLVSHRRIHTGERPYACPDCD 502
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 163,381,482
Number of Sequences: 539616
Number of extensions: 6887366
Number of successful extensions: 28526
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 28329
Number of HSP's gapped (non-prelim): 220
length of query: 425
length of database: 191,569,459
effective HSP length: 120
effective length of query: 305
effective length of database: 126,815,539
effective search space: 38678739395
effective search space used: 38678739395
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)