BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014386
(425 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1B6A|A Chain A, Human Methionine Aminopeptidase 2 Complexed With Tnp-470
Length = 478
Score = 561 bits (1445), Expect = e-160, Method: Compositional matrix adjust.
Identities = 260/367 (70%), Positives = 301/367 (82%), Gaps = 5/367 (1%)
Query: 64 QTDPPSIPVVDLFPSGEFPEGEIQQYKDDN-----LWRTTSXXXXXXXXXXXPKYNSVRQ 118
QTDPPS+P+ DL+P+G FP+G+ +Y WRTTS +N R+
Sbjct: 112 QTDPPSVPICDLYPNGVFPKGQECEYPPTQDGRTAAWRTTSEEKKALDQASEEIWNDFRE 171
Query: 119 AAEVHRQVRKYIKSLLKPGMLMTDLCETLENTVRKLISENGLQAGIAFPTGCSLNWVAAH 178
AAE HRQVRKY+ S +KPGM M ++CE LE+ RKLI ENGL AG+AFPTGCSLN AAH
Sbjct: 172 AAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLNAGLAFPTGCSLNNCAAH 231
Query: 179 WTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCAFTVAFNPVFDPLLEASREATNTGIKEA 238
+TPN+GD TVLQYDD+ K+DFGTHI G I+DCAFTV FNP +D LL+A ++ATNTGIK A
Sbjct: 232 YTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTVTFNPKYDTLLKAVKDATNTGIKCA 291
Query: 239 GIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKSVPIVKGGE 298
GIDVRLCD+G AIQEVMESYEVEI+GK +QVK IRNLNGHSIG+Y+IHAGK+VPIVKGGE
Sbjct: 292 GIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSIGQYRIHAGKTVPIVKGGE 351
Query: 299 QTKMEEGEFFAIETFASTGKGYVREDLECSHYMKNFDVGHIPLRLPRAKQLLATINKNFS 358
T+MEEGE +AIETF STGKG V +D+ECSHYMKNFDVGH+P+RLPR K LL IN+NF
Sbjct: 352 ATRMEEGEVYAIETFGSTGKGVVHDDMECSHYMKNFDVGHVPIRLPRTKHLLNVINENFG 411
Query: 359 TLAFCRRYLDRLGETKYLMALKNLCDTGIVQPYPPLCDIKGSYVSQFEHTILLRPTCKEV 418
TLAFCRR+LDRLGE+KYLMALKNLCD GIV PYPPLCDIKGSY +QFEHTILLRPTCKEV
Sbjct: 412 TLAFCRRWLDRLGESKYLMALKNLCDLGIVDPYPPLCDIKGSYTAQFEHTILLRPTCKEV 471
Query: 419 ISRGDDY 425
+SRGDDY
Sbjct: 472 VSRGDDY 478
>pdb|1QZY|A Chain A, Human Methionine Aminopeptidase In Complex With Bengamide
Inhibitor Laf153 And Cobalt
pdb|1KQ0|A Chain A, Human Methionine Aminopeptidase Type Ii In Complex With D-
Methionine
pdb|1KQ9|A Chain A, Human Methionine Aminopeptidase Type Ii In Complex With L-
Methionine
pdb|1BN5|A Chain A, Human Methionine Aminopeptidase 2
pdb|1BOA|A Chain A, Human Methionine Aminopeptidase 2 Complexed With
Angiogenesis Inhibitor Fumagillin
Length = 478
Score = 560 bits (1444), Expect = e-160, Method: Compositional matrix adjust.
Identities = 259/367 (70%), Positives = 301/367 (82%), Gaps = 5/367 (1%)
Query: 64 QTDPPSIPVVDLFPSGEFPEGEIQQYKDDN-----LWRTTSXXXXXXXXXXXPKYNSVRQ 118
QTDPPS+P+ DL+P+G FP+G+ +Y WRTTS +N R+
Sbjct: 112 QTDPPSVPICDLYPNGVFPKGQECEYPPTQDGRTAAWRTTSEEKKALDQASEEIWNDFRE 171
Query: 119 AAEVHRQVRKYIKSLLKPGMLMTDLCETLENTVRKLISENGLQAGIAFPTGCSLNWVAAH 178
AAE HRQVRKY+ S +KPGM M ++CE LE+ RKLI ENGL AG+AFPTGCSLN AAH
Sbjct: 172 AAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLNAGLAFPTGCSLNNCAAH 231
Query: 179 WTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCAFTVAFNPVFDPLLEASREATNTGIKEA 238
+TPN+GD TVLQYDD+ K+DFGTHI G I+DCAFTV FNP +D LL+A ++ATNTGIK A
Sbjct: 232 YTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTVTFNPKYDTLLKAVKDATNTGIKCA 291
Query: 239 GIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKSVPIVKGGE 298
GIDVRLCD+G AIQEVMESYEVEI+GK +QVK IRNLNGHSIG+Y+IHAGK+VPI+KGGE
Sbjct: 292 GIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSIGQYRIHAGKTVPIIKGGE 351
Query: 299 QTKMEEGEFFAIETFASTGKGYVREDLECSHYMKNFDVGHIPLRLPRAKQLLATINKNFS 358
T+MEEGE +AIETF STGKG V +D+ECSHYMKNFDVGH+P+RLPR K LL IN+NF
Sbjct: 352 ATRMEEGEVYAIETFGSTGKGVVHDDMECSHYMKNFDVGHVPIRLPRTKHLLNVINENFG 411
Query: 359 TLAFCRRYLDRLGETKYLMALKNLCDTGIVQPYPPLCDIKGSYVSQFEHTILLRPTCKEV 418
TLAFCRR+LDRLGE+KYLMALKNLCD GIV PYPPLCDIKGSY +QFEHTILLRPTCKEV
Sbjct: 412 TLAFCRRWLDRLGESKYLMALKNLCDLGIVDPYPPLCDIKGSYTAQFEHTILLRPTCKEV 471
Query: 419 ISRGDDY 425
+SRGDDY
Sbjct: 472 VSRGDDY 478
>pdb|1B59|A Chain A, Complex Of Human Methionine Aminopeptidase-2 Complexed
With Ovalicin
Length = 370
Score = 558 bits (1437), Expect = e-159, Method: Compositional matrix adjust.
Identities = 260/367 (70%), Positives = 301/367 (82%), Gaps = 5/367 (1%)
Query: 64 QTDPPSIPVVDLFPSGEFPEGEIQQYKDDN-----LWRTTSXXXXXXXXXXXPKYNSVRQ 118
QTDPPS+P+ DL+P+G FP+G+ +Y WRTTS +N R+
Sbjct: 4 QTDPPSVPICDLYPNGVFPKGQECEYPPTQDGRTAAWRTTSEEKKALDQASEEIWNDFRE 63
Query: 119 AAEVHRQVRKYIKSLLKPGMLMTDLCETLENTVRKLISENGLQAGIAFPTGCSLNWVAAH 178
AAE HRQVRKY+ S +KPGM M ++CE LE+ RKLI ENGL AG+AFPTGCSLN AAH
Sbjct: 64 AAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLNAGLAFPTGCSLNNCAAH 123
Query: 179 WTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCAFTVAFNPVFDPLLEASREATNTGIKEA 238
+TPN+GD TVLQYDD+ K+DFGTHI G I+DCAFTV FNP +D LL+A ++ATNTGIK A
Sbjct: 124 YTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTVTFNPKYDTLLKAVKDATNTGIKCA 183
Query: 239 GIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKSVPIVKGGE 298
GIDVRLCD+G AIQEVMESYEVEI+GK +QVK IRNLNGHSIG+Y+IHAGK+VPIVKGGE
Sbjct: 184 GIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSIGQYRIHAGKTVPIVKGGE 243
Query: 299 QTKMEEGEFFAIETFASTGKGYVREDLECSHYMKNFDVGHIPLRLPRAKQLLATINKNFS 358
T+MEEGE +AIETF STGKG V +D+ECSHYMKNFDVGH+P+RLPR K LL IN+NF
Sbjct: 244 ATRMEEGEVYAIETFGSTGKGVVHDDMECSHYMKNFDVGHVPIRLPRTKHLLNVINENFG 303
Query: 359 TLAFCRRYLDRLGETKYLMALKNLCDTGIVQPYPPLCDIKGSYVSQFEHTILLRPTCKEV 418
TLAFCRR+LDRLGE+KYLMALKNLCD GIV PYPPLCDIKGSY +QFEHTILLRPTCKEV
Sbjct: 304 TLAFCRRWLDRLGESKYLMALKNLCDLGIVDPYPPLCDIKGSYTAQFEHTILLRPTCKEV 363
Query: 419 ISRGDDY 425
+SRGDDY
Sbjct: 364 VSRGDDY 370
>pdb|1R58|A Chain A, Crystal Structure Of Metap2 Complexed With A357300
pdb|1R5G|A Chain A, Crystal Structure Of Metap2 Complexed With A311263
pdb|1R5H|A Chain A, Crystal Structure Of Metap2 Complexed With A320282
pdb|2ADU|A Chain A, Human Methionine Aminopeptidase Complex With 4-Aryl-1,2,3-
Triazole Inhibitor
pdb|1YW7|A Chain A, H-Metap2 Complexed With A444148
pdb|1YW8|A Chain A, H-Metap2 Complexed With A751277
pdb|1YW9|A Chain A, H-Metap2 Complexed With A849519
pdb|2GA2|A Chain A, H-Metap2 Complexed With A193400
pdb|2OAZ|A Chain A, Human Methionine Aminopeptidase-2 Complexed With Sb-587094
pdb|2EA2|A Chain A, H-Metap2 Complexed With A773812
pdb|2EA4|A Chain A, H-Metap2 Complexed With A797859
Length = 369
Score = 557 bits (1435), Expect = e-159, Method: Compositional matrix adjust.
Identities = 259/367 (70%), Positives = 301/367 (82%), Gaps = 5/367 (1%)
Query: 64 QTDPPSIPVVDLFPSGEFPEGEIQQYKDDN-----LWRTTSXXXXXXXXXXXPKYNSVRQ 118
QTDPPS+P+ DL+P+G FP+G+ +Y WRTTS +N R+
Sbjct: 3 QTDPPSVPICDLYPNGVFPKGQECEYPPTQDGRTAAWRTTSEEKKALDQASEEIWNDFRE 62
Query: 119 AAEVHRQVRKYIKSLLKPGMLMTDLCETLENTVRKLISENGLQAGIAFPTGCSLNWVAAH 178
AAE HRQVRKY+ S +KPGM M ++CE LE+ RKLI ENGL AG+AFPTGCSLN AAH
Sbjct: 63 AAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLNAGLAFPTGCSLNNCAAH 122
Query: 179 WTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCAFTVAFNPVFDPLLEASREATNTGIKEA 238
+TPN+GD TVLQYDD+ K+DFGTHI G I+DCAFTV FNP +D LL+A ++ATNTGIK A
Sbjct: 123 YTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTVTFNPKYDTLLKAVKDATNTGIKCA 182
Query: 239 GIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKSVPIVKGGE 298
GIDVRLCD+G AIQEVMESYEVEI+GK +QVK IRNLNGHSIG+Y+IHAGK+VPI+KGGE
Sbjct: 183 GIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSIGQYRIHAGKTVPIIKGGE 242
Query: 299 QTKMEEGEFFAIETFASTGKGYVREDLECSHYMKNFDVGHIPLRLPRAKQLLATINKNFS 358
T+MEEGE +AIETF STGKG V +D+ECSHYMKNFDVGH+P+RLPR K LL IN+NF
Sbjct: 243 ATRMEEGEVYAIETFGSTGKGVVHDDMECSHYMKNFDVGHVPIRLPRTKHLLNVINENFG 302
Query: 359 TLAFCRRYLDRLGETKYLMALKNLCDTGIVQPYPPLCDIKGSYVSQFEHTILLRPTCKEV 418
TLAFCRR+LDRLGE+KYLMALKNLCD GIV PYPPLCDIKGSY +QFEHTILLRPTCKEV
Sbjct: 303 TLAFCRRWLDRLGESKYLMALKNLCDLGIVDPYPPLCDIKGSYTAQFEHTILLRPTCKEV 362
Query: 419 ISRGDDY 425
+SRGDDY
Sbjct: 363 VSRGDDY 369
>pdb|3FM3|A Chain A, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2
pdb|3FM3|B Chain B, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2
pdb|3FMQ|A Chain A, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Fumagillin Bound
pdb|3FMQ|B Chain B, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Fumagillin Bound
pdb|3FMR|A Chain A, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Tnp470 Bound
pdb|3FMR|B Chain B, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Tnp470 Bound
Length = 358
Score = 254 bits (648), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 133/302 (44%), Positives = 195/302 (64%), Gaps = 11/302 (3%)
Query: 130 IKSLLKPGMLMTDLCETLENTVRKLISENGLQAGIAFPTGCSLNWVAAHWTPNSGDK-TV 188
++S+++PG+ + ++ ++E++ R L+ + GI FP G S+N AAH+T N G++ V
Sbjct: 62 VQSIVRPGITLLEIVRSIEDSTRTLL-KGERNNGIGFPAGMSMNSCAAHYTVNPGEQDIV 120
Query: 189 LQYDDVMKLDFGTHIDGCIVDCAFTVAFNPVFDPLLEASREATNTGIKEAGIDVRLCDIG 248
L+ DDV+K+DFGTH DG I+D AFTVAF +PLL A+RE T TGIK G+DVR+CDIG
Sbjct: 121 LKEDDVLKIDFGTHSDGRIMDSAFTVAFKENLEPLLVAAREGTETGIKSLGVDVRVCDIG 180
Query: 249 AAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKSVPIVKGGEQTKMEEGEFF 308
I EV+ SYEVEI G+++ ++ I +L+GHSI +++IH G S+P V + T+++ F+
Sbjct: 181 RDINEVISSYEVEIGGRMWPIRPISDLHGHSISQFRIHGGISIPAVNNRDTTRIKGDSFY 240
Query: 309 AIETFASTGKGYVREDLECSHYMKNFDVGHIPLRLPRAKQLLAT---INKNFSTLAFCRR 365
A+ETFA+TGKG + + CSH++ N R K L+ + + TL F R
Sbjct: 241 AVETFATTGKGSIDDRPPCSHFVLN----TYKSRKLFNKDLIKVYEFVKDSLGTLPFSPR 296
Query: 366 YLDRLGETK--YLMALKNLCDTGIVQPYPPLCDIKGSYVSQFEHTILLRPTCKEVISRGD 423
+LD G K L ++ L G++ PYPPL DI G V+QFEHT+ L KEV++RGD
Sbjct: 297 HLDYYGLVKGGSLKSVNLLTMMGLLTPYPPLNDIDGCKVAQFEHTVYLSEHGKEVLTRGD 356
Query: 424 DY 425
DY
Sbjct: 357 DY 358
>pdb|2DFI|A Chain A, Crystal Structure Of Pf-Map(1-292)-C
pdb|2DFI|B Chain B, Crystal Structure Of Pf-Map(1-292)-C
Length = 301
Score = 196 bits (497), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 120/296 (40%), Positives = 173/296 (58%), Gaps = 20/296 (6%)
Query: 118 QAAEVHRQVRKYIKSLLKPGMLMTDLCETLENTVRKLISENGLQAGIAFPTGCSLNWVAA 177
+A E+ ++VR+ L +PGML+ +L E++E K+I E G + AFP S+N +AA
Sbjct: 8 KAGEIAKKVREKAIKLARPGMLLLELAESIE----KMIMELGGKP--AFPVNLSINEIAA 61
Query: 178 HWTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCAFTVAFNPVFDPLLEASREATNTGIKE 237
H+TP GD TVL+ D +K+D G HIDG I D A TV D L+EA++EA N I
Sbjct: 62 HYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEEDELMEAAKEALNAAISV 121
Query: 238 AGIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKSVP-IVKG 296
A V + ++G AI+ EI + F K I NL+GH I RY++HAG S+P I +
Sbjct: 122 ARAGVEIKELGKAIEN-------EIRKRGF--KPIVNLSGHKIERYKLHAGISIPNIYRP 172
Query: 297 GEQTKMEEGEFFAIETFASTGKGYVREDLECSHYMKNFDVGHIPLRLPRAKQLLATINKN 356
+ ++EG+ FAIE FA+ G G V E YM DV P+R+ +A+ LLA I +
Sbjct: 173 HDNYVLKEGDVFAIEPFATIGAGQVIEVPPTLIYMYVRDV---PVRVAQARFLLAKIKRE 229
Query: 357 FSTLAFCRRYL-DRLGETKYLMALKNLCDTGIVQPYPPLCDIKGSYVSQFEHTILL 411
+ TL F R+L + + E + +ALK L G + YP L +I+ V+QFEHTI++
Sbjct: 230 YGTLPFAYRWLQNDMPEGQLKLALKTLEKAGAIYGYPVLKEIRNGIVAQFEHTIIV 285
>pdb|1XGS|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGS|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1WKM|A Chain A, The Product Bound Form Of The Mn(Ii)loaded Methionine
Aminopeptidase From Hyperthermophile Pyrococcus Furiosus
pdb|1WKM|B Chain B, The Product Bound Form Of The Mn(Ii)loaded Methionine
Aminopeptidase From Hyperthermophile Pyrococcus Furiosus
pdb|1XGO|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
Length = 295
Score = 195 bits (496), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 120/296 (40%), Positives = 173/296 (58%), Gaps = 20/296 (6%)
Query: 118 QAAEVHRQVRKYIKSLLKPGMLMTDLCETLENTVRKLISENGLQAGIAFPTGCSLNWVAA 177
+A E+ ++VR+ L +PGML+ +L E++E K+I E G + AFP S+N +AA
Sbjct: 8 KAGEIAKKVREKAIKLARPGMLLLELAESIE----KMIMELGGKP--AFPVNLSINEIAA 61
Query: 178 HWTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCAFTVAFNPVFDPLLEASREATNTGIKE 237
H+TP GD TVL+ D +K+D G HIDG I D A TV D L+EA++EA N I
Sbjct: 62 HYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEEDELMEAAKEALNAAISV 121
Query: 238 AGIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKSVP-IVKG 296
A V + ++G AI+ EI + F K I NL+GH I RY++HAG S+P I +
Sbjct: 122 ARAGVEIKELGKAIEN-------EIRKRGF--KPIVNLSGHKIERYKLHAGISIPNIYRP 172
Query: 297 GEQTKMEEGEFFAIETFASTGKGYVREDLECSHYMKNFDVGHIPLRLPRAKQLLATINKN 356
+ ++EG+ FAIE FA+ G G V E YM DV P+R+ +A+ LLA I +
Sbjct: 173 HDNYVLKEGDVFAIEPFATIGAGQVIEVPPTLIYMYVRDV---PVRVAQARFLLAKIKRE 229
Query: 357 FSTLAFCRRYL-DRLGETKYLMALKNLCDTGIVQPYPPLCDIKGSYVSQFEHTILL 411
+ TL F R+L + + E + +ALK L G + YP L +I+ V+QFEHTI++
Sbjct: 230 YGTLPFAYRWLQNDMPEGQLKLALKTLEKAGAIYGYPVLKEIRNGIVAQFEHTIIV 285
>pdb|3J2I|A Chain A, Structure Of Late Pre-60s Ribosomal Subunits With Nuclear
Export Factor Arx1 Bound At The Peptide Exit Tunnel
Length = 394
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 130/292 (44%), Gaps = 28/292 (9%)
Query: 147 LENTVRKLISENGLQAGIAFPTGCSLNWVAAHWTPNSGDKT-VLQYDDVMKLDFGTHIDG 205
+E T + E ++ GIAFPT S+N H++P D+ +L+ D++K+D G H+DG
Sbjct: 57 MEETGKIFKKEKEMKKGIAFPTSISVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDG 116
Query: 206 CIVDCAFTVAFNPVFDPLLEASREATNTGIKE---------AGIDVRLCDIGAAIQEVME 256
I + A T +++ ++ TG K A +RL G +V E
Sbjct: 117 FIANVAHTF--------VVDVAQGTQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTE 168
Query: 257 SYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKSV------PIVKGGEQTKMEEGEFFAI 310
++ + F I + H + ++ I K++ K E+ + E E +A+
Sbjct: 169 AWNKVAHS--FNCTPIEGMLSHQLKQHVIDGEKTIIQNPTDQQKKDHEKAEFEVHEVYAV 226
Query: 311 ETFASTGKGYVREDLECSHYMKNFDVGHIPLRLPRAKQLLATINKNFSTLAFCRRYLDRL 370
+ S+G+G ++ + + K L++ ++ + + + F + F R +
Sbjct: 227 DVLVSSGEGKAKDAGQRTTIYKRDPSKQYGLKMKTSRAFFSEVERRFDAMPFTLRAFE-- 284
Query: 371 GETKYLMALKNLCDTGIVQPYPPLCDIKGSYVSQFEHTILLRPTCKEVISRG 422
E K M + ++QP+ L + +G +V+QF+ T+LL P I+ G
Sbjct: 285 DEKKARMGVVECAKHELLQPFNVLYEKEGEFVAQFKFTVLLMPNGPMRITSG 336
>pdb|2Q8K|A Chain A, The Crystal Structure Of Ebp1
Length = 401
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 130/292 (44%), Gaps = 28/292 (9%)
Query: 147 LENTVRKLISENGLQAGIAFPTGCSLNWVAAHWTPNSGDKT-VLQYDDVMKLDFGTHIDG 205
+E T + E ++ GIAFPT S+N H++P D+ +L+ D++K+D G H+DG
Sbjct: 64 MEETGKIFKKEKEMKKGIAFPTSISVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDG 123
Query: 206 CIVDCAFTVAFNPVFDPLLEASREATNTGIKE---------AGIDVRLCDIGAAIQEVME 256
I + A T +++ ++ TG K A +RL G +V E
Sbjct: 124 FIANVAHTF--------VVDVAQGTQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTE 175
Query: 257 SYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKSV------PIVKGGEQTKMEEGEFFAI 310
++ + F I + H + ++ I K++ K E+ + E E +A+
Sbjct: 176 AWNKVAHS--FNCTPIEGMLSHQLKQHVIDGEKTIIQNPTDQQKKDHEKAEFEVHEVYAV 233
Query: 311 ETFASTGKGYVREDLECSHYMKNFDVGHIPLRLPRAKQLLATINKNFSTLAFCRRYLDRL 370
+ S+G+G ++ + + K L++ ++ + + + F + F R +
Sbjct: 234 DVLVSSGEGKAKDAGQRTTIYKRDPSKQYGLKMKTSRAFFSEVERRFDAMPFTLRAFE-- 291
Query: 371 GETKYLMALKNLCDTGIVQPYPPLCDIKGSYVSQFEHTILLRPTCKEVISRG 422
E K M + ++QP+ L + +G +V+QF+ T+LL P I+ G
Sbjct: 292 DEKKARMGVVECAKHELLQPFNVLYEKEGEFVAQFKFTVLLMPNGPMRITSG 343
>pdb|2V6C|A Chain A, Crystal Structure Of Erbb3 Binding Protein 1 (Ebp1)
Length = 353
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 130/287 (45%), Gaps = 18/287 (6%)
Query: 147 LENTVRKLISENGLQAGIAFPTGCSLNWVAAHWTPNSGDKT-VLQYDDVMKLDFGTHIDG 205
+E T + E ++ GIAFPT S+N H++P D+ +L+ D++K+D G H+DG
Sbjct: 50 MEETGKIFKKEKEMKKGIAFPTSISVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDG 109
Query: 206 CIVDCAFTVAFNPVFDPLLEASREATNTGIKEAGI----DVRLCDIGAAIQEVMESYEVE 261
I + A T V R+A IK A + +RL G +V E++
Sbjct: 110 FIANVAHTFVIG-VAQGTQVTGRKADV--IKAAHLCAEAALRLVKPGNQNTQVTEAWNKV 166
Query: 262 INGKVFQVKSIRNLNGHSIGRYQIHAGKSV---PI---VKGGEQTKMEEGEFFAIETFAS 315
+ F I + H + ++ I K++ P K E+ + E E +A++ S
Sbjct: 167 AHS--FNCTPIEGMLSHQLKQHVIDGEKTIIQNPTDQQKKDHEKAEFEVHEVYAVDVLVS 224
Query: 316 TGKGYVREDLECSHYMKNFDVGHIPLRLPRAKQLLATINKNFSTLAFCRRYLDRLGETKY 375
+G+G ++ + + K L++ ++ + + + F + F R + E K
Sbjct: 225 SGEGKAKDAGQRTTIYKRDPSKQYGLKMKTSRAFFSEVERRFDAMPFALRAFE--DEKKA 282
Query: 376 LMALKNLCDTGIVQPYPPLCDIKGSYVSQFEHTILLRPTCKEVISRG 422
M + ++QP+ L + +G +V+QF+ T+LL P I+ G
Sbjct: 283 RMGVVECAKHELLQPFNVLYEREGEFVAQFKFTVLLMPNGPMRITSG 329
>pdb|3TB5|A Chain A, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
pdb|3TB5|B Chain B, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
pdb|3TB5|C Chain C, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
Length = 264
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 103/215 (47%), Gaps = 31/215 (14%)
Query: 120 AEVHRQVRKYIKSLLKPGMLMTDLCETLENTVRKLISENGLQA------GIAFPTGCSLN 173
A+VHR +R +IK PG+ D+ E VR I +G A G + T CS+N
Sbjct: 21 ADVHRHLRTFIK----PGITSWDI----EVFVRDFIESHGGVAAQIGYEGYKYATCCSIN 72
Query: 174 WVAAHWTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCAFTVAFN---PVFDPLLEASREA 230
H P K VL+ D++K+D + G I D ++ P D L+E +++A
Sbjct: 73 DEICHGFPR---KKVLKDGDLIKVDMCVDLKGAISDSCWSYVVGESTPEIDRLMEVTKKA 129
Query: 231 TNTGIKEAGIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKS 290
GI++A + R+ DIG AIQ +E G+ + V +R+ GH IG IH
Sbjct: 130 LYLGIEQAQVGNRIGDIGHAIQTYVE-------GEGYGV--VRDFVGHGIGP-TIHESPM 179
Query: 291 VP-IVKGGEQTKMEEGEFFAIETFASTGKGYVRED 324
+P + G+ +++EG IE +TG ++ D
Sbjct: 180 IPHYGEAGKGLRLKEGMVITIEPMVNTGTWRMKMD 214
>pdb|3MX6|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
pdb|3MX6|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
Length = 262
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 89/215 (41%), Gaps = 33/215 (15%)
Query: 116 VRQAAEVHRQVRKYIKSLLKPGML---MTDLCETLENTVRKLISENGLQAGI---AFPTG 169
+R A ++ + +I +KP + + DLC + S N + A + FP
Sbjct: 17 MRAAGKLAAETLDFITDHVKPNVTTNSLNDLCHNF------ITSHNAIPAPLNYKGFPKS 70
Query: 170 --CSLNWVAAHWTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCAFT-----VAFNPVFDP 222
S+N V H PN DK L+ D++ +D +DG D + VA P
Sbjct: 71 ICTSINHVVCHGIPN--DKP-LKNGDIVNIDVTVILDGWYGDTSRMYYVGDVAIKP--KR 125
Query: 223 LLEASREATNTGIKEAGIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGR 282
L++ + +A GI+ +L DIG AIQ E + + +R+ GH IGR
Sbjct: 126 LIQVTYDAMMKGIEVVRPGAKLGDIGYAIQSYAEKHNYSV---------VRDYTGHGIGR 176
Query: 283 YQIHAGKSVPIVKGGEQTKMEEGEFFAIETFASTG 317
+ + G ++EG FF +E + G
Sbjct: 177 VFHDKPSILNYGRNGTGLTLKEGMFFTVEPMINAG 211
>pdb|3MR1|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|C Chain C, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|D Chain D, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
Length = 252
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 89/215 (41%), Gaps = 33/215 (15%)
Query: 116 VRQAAEVHRQVRKYIKSLLKPGML---MTDLCETLENTVRKLISENGLQAGI---AFPTG 169
+R A ++ + +I +KP + + DLC + S N + A + FP
Sbjct: 17 MRAAGKLAAETLDFITDHVKPNVTTNSLNDLCHNF------ITSHNAIPAPLNYKGFPKS 70
Query: 170 --CSLNWVAAHWTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCAFT-----VAFNPVFDP 222
S+N V H PN DK L+ D++ +D +DG D + VA P
Sbjct: 71 ICTSINHVVCHGIPN--DKP-LKNGDIVNIDVTVILDGWYGDTSRMYYVGDVAIKP--KR 125
Query: 223 LLEASREATNTGIKEAGIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGR 282
L++ + +A GI+ +L DIG AIQ E + + +R+ GH IGR
Sbjct: 126 LIQVTYDAMMKGIEVVRPGAKLGDIGYAIQSYAEKHNYSV---------VRDYTGHGIGR 176
Query: 283 YQIHAGKSVPIVKGGEQTKMEEGEFFAIETFASTG 317
+ + G ++EG FF +E + G
Sbjct: 177 VFHDKPSILNYGRNGTGLTLKEGMFFTVEPMINAG 211
>pdb|4IPA|A Chain A, Structure Of A Thermophilic Arx1
pdb|4IPA|B Chain B, Structure Of A Thermophilic Arx1
pdb|4IPA|C Chain C, Structure Of A Thermophilic Arx1
pdb|4IPA|D Chain D, Structure Of A Thermophilic Arx1
Length = 423
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 63/284 (22%), Positives = 107/284 (37%), Gaps = 35/284 (12%)
Query: 117 RQAAEVHRQVRKYIKSLLKPGMLMTDLCET----LENTVRKLISENGLQAGIAFPTGCSL 172
+ AA++ +V + L PG + D+CE +E + K+ + G + PT S
Sbjct: 30 KTAAQISEKVLAEVSKLCVPGAKIIDICEQGDKLMEEELSKVYRDKKTNKGFSHPTTVSP 89
Query: 173 NWVAAHWTPNSGDK----TVLQYDDVMKLDFGTHIDG-CIVDCAFTVAFNPVFDPLLEAS 227
+TP D+ T +Q + +K+ G IDG + C VA N DP +
Sbjct: 90 AAFITPYTPLRSDEKEAATEIQPGEPIKIQLGAQIDGYGTIVCDTIVAKN-ANDPDVIEG 148
Query: 228 REA-----------------TNTGIKEAGIDVRLCDIGAAI--QEVMESYEVEINGKVFQ 268
R+A G+ G D A + S +E K +
Sbjct: 149 RQADLFLATYYANEVLLRLMVPPGLLATGTDEEKAKAAAVKPPSQAKISSLLEKVAKAYD 208
Query: 269 VKSIRNLNGHSIGRYQIHAGKSVPIVKGGEQTKMEE----GEFFAIETFASTGKGYVRED 324
I + + +I K + I+ GE K E G+ + +E S G G V++
Sbjct: 209 CNIIESTTSWLFDKNEIEGKKKI-ILSPGENIKGEGVPEVGDVWGVEVGCSLGSGKVKQ- 266
Query: 325 LECSHYMKNFDVGHIPLRLPRAKQLLATINKNFSTLAFCRRYLD 368
E + L+ P ++++ + + K F T F R L+
Sbjct: 267 FEQRATLHRRTNNTYALKRPTSRKIYSEVQKKFGTFPFSLRQLE 310
>pdb|1QXW|A Chain A, Crystal Structure Of Staphyloccocus Aureus In Complex With
An Aminoketone Inhibitor 54135.
pdb|1QXY|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle 618
pdb|1QXZ|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle Inhibitor 119
Length = 252
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 96/221 (43%), Gaps = 29/221 (13%)
Query: 115 SVRQAAEVHRQVRKYIKSLLKPGMLMTDLCETLENTVRKLISENG-LQAGIA---FP--T 168
++++ + +VR +++ KPG+ +L +N ++L E G + A I FP T
Sbjct: 11 ALKEIGYICAKVRNTMQAATKPGITTKEL----DNIAKELFEEYGAISAPIHDENFPGQT 66
Query: 169 GCSLNWVAAHWTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCAFTVAFNPVFDPL----L 224
S+N AH P+ K V++ D++ +D +G D + DP+
Sbjct: 67 CISVNEEVAHGIPS---KRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKVC 123
Query: 225 EASREATNTGIKEAGIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQ 284
+ + A I + +L +IG A+ ++++ I+NL GH +G
Sbjct: 124 DVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKV---------IKNLTGHGVG-LS 173
Query: 285 IHAGKS--VPIVKGGEQTKMEEGEFFAIETFASTGKGYVRE 323
+H + + ++T + EG AIE F S+ +V E
Sbjct: 174 LHEAPAHVLNYFDPKDKTLLTEGMVLAIEPFISSNASFVTE 214
>pdb|1O0X|A Chain A, Crystal Structure Of Methionine Aminopeptidase (Tm1478)
From Thermotoga Maritima At 1.90 A Resolution
Length = 262
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 90/231 (38%), Gaps = 33/231 (14%)
Query: 117 RQAAEVHRQVRKYIKSLLKPGMLMTDLCETLENTVRKLISENGLQA--GIAFPTGCSLNW 174
+ A R+VRK I PG D+ + +KL + + G + T S+N
Sbjct: 30 KAVAVALREVRKVIV----PGKTAWDVETLVLEIFKKLRVKPAFKGYGGYKYATCVSVNE 85
Query: 175 VAAHWTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCAFTVAFNPVFD---PLLEASREAT 231
H P + V + D++ +D G G D A T + L+ +RE
Sbjct: 86 EVVHGLPLK--EKVFKEGDIVSVDVGAVYQGLYGDAAVTYIVGETDERGKELVRVTREVL 143
Query: 232 NTGIKEAGIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKSV 291
IK +RL D+ IQE +ES + IR+ GH +GR ++H +
Sbjct: 144 EKAIKMIKPGIRLGDVSHCIQETVESVGFNV---------IRDYVGHGVGR-ELHEDPQI 193
Query: 292 P-IVKGGEQTKMEEGEFFAIETFASTG--KGYVRED---------LECSHY 330
P G + +G AIE S G + V+ED C+H+
Sbjct: 194 PNYGTPGTGVVLRKGMTLAIEPMVSEGDWRVVVKEDGWTAVTVDGSRCAHF 244
>pdb|2GU4|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
0.5, Di-Metalated
pdb|2GU4|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
0.5, Di-Metalated
pdb|2GU5|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
1, Di-Metalated
pdb|2GU5|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
1, Di-Metalated
pdb|2GU6|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
2, Di-metalated
pdb|2GU6|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
2, Di-metalated
pdb|2GU7|A Chain A, E. Coli Methionine Aminopeptidase Unliganded, 1:0.5
pdb|2GU7|B Chain B, E. Coli Methionine Aminopeptidase Unliganded, 1:0.5
Length = 263
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 88/213 (41%), Gaps = 23/213 (10%)
Query: 117 RQAAEVHRQVRKYIKSLLKPGML---MTDLCETLENTVRKLISENGLQAGIAFPTGCSLN 173
R AAEV + Y+K + G L D ++ V + +G + S+N
Sbjct: 18 RLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCI----SIN 73
Query: 174 WVAAHWTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCA--FTVAFNPVF-DPLLEASREA 230
V H P+ D +L+ D++ +D DG D + F V + + L ++E+
Sbjct: 74 EVVCHGIPD--DAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQES 131
Query: 231 TNTGIKEAGIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKS 290
++ + L +IGAAIQ+ +E+ + F V +R GH IGR H
Sbjct: 132 LYLALRMVKPGINLREIGAAIQKFVEA-------EGFSV--VREYCGHGIGR-GFHEEPQ 181
Query: 291 VPIVKGGE-QTKMEEGEFFAIETFASTGKGYVR 322
V E ++ G F IE + GK +R
Sbjct: 182 VLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIR 214
>pdb|2GG0|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG2|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG3|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG5|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG7|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG8|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG9|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GGB|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GGC|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2Q93|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
B21
pdb|2Q95|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A05
pdb|2Q96|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A18
Length = 263
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 88/213 (41%), Gaps = 23/213 (10%)
Query: 117 RQAAEVHRQVRKYIKSLLKPGML---MTDLCETLENTVRKLISENGLQAGIAFPTGCSLN 173
R AAEV + Y+K + G L D ++ V + +G + S+N
Sbjct: 18 RLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCI----SIN 73
Query: 174 WVAAHWTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCA--FTVAFNPVF-DPLLEASREA 230
V H P+ D +L+ D++ +D DG D + F V + + L ++E+
Sbjct: 74 EVVCHGIPD--DAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQES 131
Query: 231 TNTGIKEAGIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKS 290
++ + L +IGAAIQ+ +E+ + F V +R GH IGR H
Sbjct: 132 LYLALRMVKPGINLREIGAAIQKFVEA-------EGFSV--VREYCGHGIGR-GFHEEPQ 181
Query: 291 VPIVKGGE-QTKMEEGEFFAIETFASTGKGYVR 322
V E ++ G F IE + GK +R
Sbjct: 182 VLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIR 214
>pdb|1XNZ|A Chain A, Crystal Structure Of Mn(Ii) Form Of E. Coli. Methionine
Aminopeptidase In Complex With
5-(2-Chlorophenyl)furan-2- Carboxylic Acid
pdb|2BB7|A Chain A, Mn Form Of E. Coli Methionine Aminopeptidase In Complex
With A Quinolinyl Sulfonamide Inhibitor
pdb|2EVC|A Chain A, Crystal Structure Of E. Coli. Methionine Amino Peptidase
In Complex With 5-(2-(trifluoromethyl)phenyl)furan-2-
Carboxylic Acid
pdb|2EVM|A Chain A, Crystal Structure Of Methionine Aminopeptidase In Complex
With 5-(2,5-Dichlorophenyl)furan-2-Carboxylic Acid
pdb|2EVO|A Chain A, Crystal Structure Of Methionine Amino Peptidase In Complex
With N-Cyclopentyl-N-(Thiazol-2-Yl)oxalamide
pdb|2EVO|B Chain B, Crystal Structure Of Methionine Amino Peptidase In Complex
With N-Cyclopentyl-N-(Thiazol-2-Yl)oxalamide
pdb|1MAT|A Chain A, Structure Of The Cobalt-Dependent Methionine
Aminopeptidase From Escherichia Coli: A New Type Of
Proteolytic Enzyme
Length = 264
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 88/213 (41%), Gaps = 23/213 (10%)
Query: 117 RQAAEVHRQVRKYIKSLLKPGML---MTDLCETLENTVRKLISENGLQAGIAFPTGCSLN 173
R AAEV + Y+K + G L D ++ V + +G + S+N
Sbjct: 19 RLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCI----SIN 74
Query: 174 WVAAHWTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCA--FTVAFNPVF-DPLLEASREA 230
V H P+ D +L+ D++ +D DG D + F V + + L ++E+
Sbjct: 75 EVVCHGIPD--DAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQES 132
Query: 231 TNTGIKEAGIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKS 290
++ + L +IGAAIQ+ +E+ + F V +R GH IGR H
Sbjct: 133 LYLALRMVKPGINLREIGAAIQKFVEA-------EGFSV--VREYCGHGIGR-GFHEEPQ 182
Query: 291 VPIVKGGE-QTKMEEGEFFAIETFASTGKGYVR 322
V E ++ G F IE + GK +R
Sbjct: 183 VLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIR 215
>pdb|2GTX|A Chain A, Structural Basis Of Catalysis By Mononuclear Methionine
Aminopeptidase
pdb|2GTX|B Chain B, Structural Basis Of Catalysis By Mononuclear Methionine
Aminopeptidase
pdb|3D27|A Chain A, E. Coli Methionine Aminopeptidase With Fe Inhibitor W29
Length = 261
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 88/213 (41%), Gaps = 23/213 (10%)
Query: 117 RQAAEVHRQVRKYIKSLLKPGML---MTDLCETLENTVRKLISENGLQAGIAFPTGCSLN 173
R AAEV + Y+K + G L D ++ V + +G + S+N
Sbjct: 16 RLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCI----SIN 71
Query: 174 WVAAHWTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCA--FTVAFNPVF-DPLLEASREA 230
V H P+ D +L+ D++ +D DG D + F V + + L ++E+
Sbjct: 72 EVVCHGIPD--DAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQES 129
Query: 231 TNTGIKEAGIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKS 290
++ + L +IGAAIQ+ +E+ + F V +R GH IGR H
Sbjct: 130 LYLALRMVKPGINLREIGAAIQKFVEA-------EGFSV--VREYCGHGIGR-GFHEEPQ 179
Query: 291 VPIVKGGE-QTKMEEGEFFAIETFASTGKGYVR 322
V E ++ G F IE + GK +R
Sbjct: 180 VLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIR 212
>pdb|2P98|A Chain A, E. Coli Methionine Aminopeptidase Monometalated With
Inhibitor Ye7
pdb|2P9A|A Chain A, E. Coli Methionine Aminopeptidase Dimetalated With
Inhibitor Ye6
pdb|2Q92|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
B23
pdb|2Q94|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A04
Length = 262
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 88/213 (41%), Gaps = 23/213 (10%)
Query: 117 RQAAEVHRQVRKYIKSLLKPGML---MTDLCETLENTVRKLISENGLQAGIAFPTGCSLN 173
R AAEV + Y+K + G L D ++ V + +G + S+N
Sbjct: 18 RLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCI----SIN 73
Query: 174 WVAAHWTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCA--FTVAFNPVF-DPLLEASREA 230
V H P+ D +L+ D++ +D DG D + F V + + L ++E+
Sbjct: 74 EVVCHGIPD--DAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQES 131
Query: 231 TNTGIKEAGIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKS 290
++ + L +IGAAIQ+ +E+ + F V +R GH IGR H
Sbjct: 132 LYLALRMVKPGINLREIGAAIQKFVEA-------EGFSV--VREYCGHGIGR-GFHEEPQ 181
Query: 291 VPIVKGGE-QTKMEEGEFFAIETFASTGKGYVR 322
V E ++ G F IE + GK +R
Sbjct: 182 VLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIR 214
>pdb|4A6V|A Chain A, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
pdb|4A6V|B Chain B, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
Length = 265
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 88/213 (41%), Gaps = 23/213 (10%)
Query: 117 RQAAEVHRQVRKYIKSLLKPGML---MTDLCETLENTVRKLISENGLQAGIAFPTGCSLN 173
R AAEV + Y+K + G L D ++ V + +G + S+N
Sbjct: 19 RLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCI----SIN 74
Query: 174 WVAAHWTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCA--FTVAFNPVF-DPLLEASREA 230
V H P+ D +L+ D++ +D DG D + F V + + L ++E+
Sbjct: 75 EVVCHGIPD--DAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQES 132
Query: 231 TNTGIKEAGIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKS 290
++ + L +IGAAIQ+ +E+ + F V +R GH IGR H
Sbjct: 133 LYLALRMVKPGINLREIGAAIQKFVEA-------EGFSV--VREYCGHGIGR-GFHEEPQ 182
Query: 291 VPIVKGGE-QTKMEEGEFFAIETFASTGKGYVR 322
V E ++ G F IE + GK +R
Sbjct: 183 VLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIR 215
>pdb|2P99|A Chain A, E. Coli Methionine Aminopeptidase Monometalated With
Inhibitor Ye6
Length = 261
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 88/213 (41%), Gaps = 23/213 (10%)
Query: 117 RQAAEVHRQVRKYIKSLLKPGML---MTDLCETLENTVRKLISENGLQAGIAFPTGCSLN 173
R AAEV + Y+K + G L D ++ V + +G + S+N
Sbjct: 18 RLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCI----SIN 73
Query: 174 WVAAHWTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCA--FTVAFNPVF-DPLLEASREA 230
V H P+ D +L+ D++ +D DG D + F V + + L ++E+
Sbjct: 74 EVVCHGIPD--DAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQES 131
Query: 231 TNTGIKEAGIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKS 290
++ + L +IGAAIQ+ +E+ + F V +R GH IGR H
Sbjct: 132 LYLALRMVKPGINLREIGAAIQKFVEA-------EGFSV--VREYCGHGIGR-GFHEEPQ 181
Query: 291 VPIVKGGE-QTKMEEGEFFAIETFASTGKGYVR 322
V E ++ G F IE + GK +R
Sbjct: 182 VLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIR 214
>pdb|3Q6D|A Chain A, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|B Chain B, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|C Chain C, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|D Chain D, Xaa-Pro Dipeptidase From Bacillus Anthracis
Length = 356
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 33/147 (22%)
Query: 116 VRQAAEVHRQVRKYIKSLLKPGMLMTDLCETLENTVRK---------LISENGLQAGIAF 166
+++AA++ ++I S ++PG+ ++ LE +RK +I +GL++ A
Sbjct: 139 LKEAAQIADAAFEHILSFIRPGVSEIEVSNELEFFMRKQGATSSSFDIIVASGLRS--AL 196
Query: 167 PTGCSLNWVAAHWTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCAFTVA-------FNPV 219
P G + + V++ D + LDFG + G D T+A +
Sbjct: 197 PHGVA-------------SEKVIETGDFVTLDFGAYYKGYCSDITRTIAVGEPSDKLKEI 243
Query: 220 FDPLLEASREATNTGIKEAGIDVRLCD 246
++ +LEA N GIK AG+ R D
Sbjct: 244 YNIVLEAQLRGVN-GIK-AGLTGREAD 268
>pdb|4MAT|A Chain A, E.Coli Methionine Aminopeptidase His79ala Mutant
Length = 278
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 88/213 (41%), Gaps = 23/213 (10%)
Query: 117 RQAAEVHRQVRKYIKSLLKPGML---MTDLCETLENTVRKLISENGLQAGIAFPTGCSLN 173
R AAEV + Y+K + G L D ++ V + +G + S+N
Sbjct: 19 RLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCI----SIN 74
Query: 174 WVAAHWTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCA--FTVAFNPVF-DPLLEASREA 230
V H P+ D +L+ D++ +D DG D + F V + + L ++E+
Sbjct: 75 EVVCHGIPD--DAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQES 132
Query: 231 TNTGIKEAGIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKS 290
++ + L +IGAAIQ+ +E+ + F V +R GH IG+ H
Sbjct: 133 LYLALRMVKPGINLREIGAAIQKFVEA-------EGFSV--VREYCGHGIGQ-GFHEEPQ 182
Query: 291 VPIVKGGE-QTKMEEGEFFAIETFASTGKGYVR 322
V E ++ G F IE + GK +R
Sbjct: 183 VLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIR 215
>pdb|1C27|A Chain A, E. Coli Methionine Aminopeptidase:norleucine Phosphonate
Complex
pdb|1C21|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Complex
pdb|1C22|A Chain A, E. Coli Methionine Aminopeptidase: Trifluoromethionine
Complex
pdb|1C23|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphonate
Complex
pdb|1C24|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphinate
Complex
Length = 263
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 88/213 (41%), Gaps = 23/213 (10%)
Query: 117 RQAAEVHRQVRKYIKSLLKPGML---MTDLCETLENTVRKLISENGLQAGIAFPTGCSLN 173
R AAEV + Y+K + G L D ++ V + +G + S+N
Sbjct: 18 RLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCI----SIN 73
Query: 174 WVAAHWTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCA--FTVAFNPVF-DPLLEASREA 230
V H P+ D +L+ D++ +D DG D + F V + + L ++E+
Sbjct: 74 EVVCHGIPD--DAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQES 131
Query: 231 TNTGIKEAGIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKS 290
++ + L +IGAAIQ+ +E+ + F V +R GH IG+ H
Sbjct: 132 LYLALRMVKPGINLREIGAAIQKFVEA-------EGFSV--VREYCGHGIGQ-GFHEEPQ 181
Query: 291 VPIVKGGE-QTKMEEGEFFAIETFASTGKGYVR 322
V E ++ G F IE + GK +R
Sbjct: 182 VLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIR 214
>pdb|2MAT|A Chain A, E.Coli Methionine Aminopeptidase At 1.9 Angstrom
Resolution
pdb|1YVM|A Chain A, E. Coli Methionine Aminopeptidase In Complex With
Thiabendazole
pdb|4A6W|A Chain A, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
Length = 264
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 88/213 (41%), Gaps = 23/213 (10%)
Query: 117 RQAAEVHRQVRKYIKSLLKPGML---MTDLCETLENTVRKLISENGLQAGIAFPTGCSLN 173
R AAEV + Y+K + G L D ++ V + +G + S+N
Sbjct: 19 RLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCI----SIN 74
Query: 174 WVAAHWTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCA--FTVAFNPVF-DPLLEASREA 230
V H P+ D +L+ D++ +D DG D + F V + + L ++E+
Sbjct: 75 EVVCHGIPD--DAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQES 132
Query: 231 TNTGIKEAGIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKS 290
++ + L +IGAAIQ+ +E+ + F V +R GH IG+ H
Sbjct: 133 LYLALRMVKPGINLREIGAAIQKFVEA-------EGFSV--VREYCGHGIGQ-GFHEEPQ 182
Query: 291 VPIVKGGE-QTKMEEGEFFAIETFASTGKGYVR 322
V E ++ G F IE + GK +R
Sbjct: 183 VLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIR 215
>pdb|3MAT|A Chain A, E.coli Methionine Aminopeptidase Transition-state
Inhibitor Complex
Length = 265
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 88/213 (41%), Gaps = 23/213 (10%)
Query: 117 RQAAEVHRQVRKYIKSLLKPGML---MTDLCETLENTVRKLISENGLQAGIAFPTGCSLN 173
R AAEV + Y+K + G L D ++ V + +G + S+N
Sbjct: 19 RLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCI----SIN 74
Query: 174 WVAAHWTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCA--FTVAFNPVF-DPLLEASREA 230
V H P+ D +L+ D++ +D DG D + F V + + L ++E+
Sbjct: 75 EVVCHGIPD--DAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQES 132
Query: 231 TNTGIKEAGIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKS 290
++ + L +IGAAIQ+ +E+ + F V +R GH IG+ H
Sbjct: 133 LYLALRMVKPGINLREIGAAIQKFVEA-------EGFSV--VREYCGHGIGQ-GFHEEPQ 182
Query: 291 VPIVKGGE-QTKMEEGEFFAIETFASTGKGYVR 322
V E ++ G F IE + GK +R
Sbjct: 183 VLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIR 215
>pdb|4B6A|TT Chain t, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex
With Arx1 And Rei1
Length = 614
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 42/152 (27%)
Query: 114 NSVRQAAEVHRQVRKYIKSLLKPGM---------------LMTD--LCETLENTVRKLIS 156
N R A ++ + KY+ SL+ L+TD + LE + ++
Sbjct: 47 NKYRTAGQIAQTALKYVTSLINDSYHSKTTQRQLTVPELCLLTDSFILTRLEQYYKNKVN 106
Query: 157 ENGLQAGIAFPTGCSLNWVAAHWTPNSGD-KTVLQYD------------------DVMKL 197
E G IA PT ++ ++ W P D + +L ++ D++K+
Sbjct: 107 ERG----IAIPTTIDIDQISGGWCPEIDDTQNLLNWNKGKDSTFASSVTGTLRPGDLVKI 162
Query: 198 DFGTHIDGCIVDCAFTVAFNPVFD--PLLEAS 227
G HIDG + + T+ PV + P+L+ +
Sbjct: 163 TLGVHIDGYTSEVSHTMVIYPVDETKPILQPT 194
>pdb|2ZSG|A Chain A, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
pdb|2ZSG|B Chain B, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
Length = 359
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 19/140 (13%)
Query: 116 VRQAAEVHRQVRKYIKSL--LKPGMLMTDLCETLENTVRKLISENGLQAGIAFPTGCSLN 173
++QA E+ R +++++ ++ GM ++ LE T+RK +E G+AF T +
Sbjct: 142 IKQAIEISE--RAFLETVQQIRAGMTEKEIAALLEYTMRKEGAE-----GVAFDTIVASG 194
Query: 174 WVAAHWTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCAFTVAF-------NPVFDPLLEA 226
+A + DK V++ DV+ +DFG + D V+ V +LEA
Sbjct: 195 CRSALPHGKASDK-VVERGDVIVIDFGATYENYCADITRVVSIGEPSDEVKEVHSIVLEA 253
Query: 227 SREATNTGIKEAGIDVRLCD 246
A I +AG+ +L D
Sbjct: 254 QERALK--IAKAGVTGKLLD 271
>pdb|4AKT|A Chain A, Patg Macrocyclase In Complex With Peptide
pdb|4AKT|B Chain B, Patg Macrocyclase In Complex With Peptide
Length = 360
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 24/56 (42%)
Query: 333 NFDVGHIPLRLPRAKQLLATINKNFSTLAFCRRYLDRLGETKYLMALKNLCDTGIV 388
N+D PL L RA L + N AFCR GE + A+K D ++
Sbjct: 164 NYDDVMSPLNLARAIDLALELGANIIHCAFCRPTQTSEGEEILVQAIKKCQDNNVL 219
>pdb|4AKS|A Chain A, Patg Macrocyclase Domain
pdb|4AKS|B Chain B, Patg Macrocyclase Domain
Length = 360
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 24/56 (42%)
Query: 333 NFDVGHIPLRLPRAKQLLATINKNFSTLAFCRRYLDRLGETKYLMALKNLCDTGIV 388
N+D PL L RA L + N AFCR GE + A+K D ++
Sbjct: 164 NYDDVMSPLNLARAIDLALELGANIIHCAFCRPTQTSEGEEILVQAIKKCQDNNVL 219
>pdb|4H6X|A Chain A, Structure Of Patellamide Maturation Protease Patg
pdb|4H6X|B Chain B, Structure Of Patellamide Maturation Protease Patg
Length = 357
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 24/56 (42%)
Query: 333 NFDVGHIPLRLPRAKQLLATINKNFSTLAFCRRYLDRLGETKYLMALKNLCDTGIV 388
N+D PL L RA L + N AFCR GE + A+K D ++
Sbjct: 146 NYDDVMSPLNLARAIDLALELGANIIHCAFCRPTQTSEGEEILVQAIKKCQDNNVL 201
>pdb|4CTS|A Chain A, Crystal Structure Analysis And Molecular Model Of A
Complex Of Citrate Synthase With Oxaloacetate And
S-Acetonyl- Coenzyme A
pdb|4CTS|B Chain B, Crystal Structure Analysis And Molecular Model Of A
Complex Of Citrate Synthase With Oxaloacetate And
S-Acetonyl- Coenzyme A
pdb|1CTS|A Chain A, Crystallographic Refinement And Atomic Models Of Two
Different Forms Of Citrate Synthase At 2.7 And 1.7
Angstroms Resolution
pdb|3ENJ|A Chain A, Structure Of Pig Heart Citrate Synthase At 1.78 A
Resolution
Length = 437
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 15/109 (13%)
Query: 275 LNGHSIGRYQIHAGKSVPIVKGGEQTKMEEGEFFAI--------ETFASTGKGYVREDLE 326
G+SI Q K +P KGGE+ + EG F+ + E + K + +
Sbjct: 66 FRGYSIPECQ----KMLPKAKGGEE-PLPEGLFWLLVTGQIPTEEQVSWLSKEWAKRAAL 120
Query: 327 CSHYMKNFDVGHIPLRLPRAKQLLATINKNFSTLAFCRRYLDRLGETKY 375
SH + D + P L QL A I S F R Y + + TKY
Sbjct: 121 PSHVVTMLD--NFPTNLHPMSQLSAAITALNSESNFARAYAEGIHRTKY 167
>pdb|2CTS|A Chain A, Crystallographic Refinement And Atomic Models Of Two
Different Forms Of Citrate Synthase At 2.7 And 1.7
Angstroms Resolution
Length = 437
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 15/109 (13%)
Query: 275 LNGHSIGRYQIHAGKSVPIVKGGEQTKMEEGEFFAI--------ETFASTGKGYVREDLE 326
G+SI Q K +P KGGE+ + EG F+ + E + K + +
Sbjct: 66 FRGYSIPECQ----KMLPKAKGGEE-PLPEGLFWLLVTGQIPTEEQVSWLSKEWAKRAAL 120
Query: 327 CSHYMKNFDVGHIPLRLPRAKQLLATINKNFSTLAFCRRYLDRLGETKY 375
SH + D + P L QL A I S F R Y + + TKY
Sbjct: 121 PSHVVTMLD--NFPTNLHPMSQLSAAITALNSESNFARAYAEGIHRTKY 167
>pdb|2UUT|A Chain A, The 2.4 Angstrom Resolution Structure Of The D346g Mutant
Of The Sapporo Virus Rdrp Polymerase
Length = 508
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 247 IGAAIQEVMESYEVEINGKVFQVKSIRNLNG 277
+ AAI + ES+ V G VFQV++I G
Sbjct: 317 VAAAILQAYESHNVPYTGNVFQVETIHTYGG 347
>pdb|2UUW|A Chain A, 2.75 Angstrom Structure Of The D347g D348g Mutant
Structure Of Sapporo Virus Rdrp Polymerase
pdb|2WK4|A Chain A, Dimeric Structure Of D347g D348g Mutant Of The
Sapporovirus Rna Dependent Rna Polymerase
pdb|2WK4|B Chain B, Dimeric Structure Of D347g D348g Mutant Of The
Sapporovirus Rna Dependent Rna Polymerase
Length = 515
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 247 IGAAIQEVMESYEVEINGKVFQVKSIRNLNG 277
+ AAI + ES+ V G VFQV++I G
Sbjct: 317 VAAAILQAYESHNVPYTGNVFQVETIHTYGG 347
>pdb|3IFR|A Chain A, The Crystal Structure Of Xylulose Kinase From
Rhodospirillum Rubrum
pdb|3IFR|B Chain B, The Crystal Structure Of Xylulose Kinase From
Rhodospirillum Rubrum
Length = 508
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 149 NTVRKLISENGLQAGIAFPTGCSLNWVAAHWTPNSGDKTVLQYDDVMKLDFGTHIDGCIV 208
+ V L + NG A TG +LNW+A P +G+ Q D + + DG +
Sbjct: 289 HLVPGLYAPNGCXAA----TGSALNWLAKLLAPEAGEAAHAQL-DALAAEVPAGADGLVC 343
Query: 209 DCAFTVAFNPVFDPL 223
F P+ DP
Sbjct: 344 LPYFLGEKTPIHDPF 358
>pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human
Hcn4 Channel
Length = 220
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 12/106 (11%)
Query: 279 SIGR--YQIHAGKSVPIVKGGEQTKMEEGEFFAIETFASTGK--GYVREDLECSHYMKNF 334
+IG+ Y I G + KG ++TK+ +G +F + G+ VR D C Y +
Sbjct: 108 TIGKKMYFIQHGVVSVLTKGNKETKLADGSYFGEICLLTRGRRTASVRADTYCRLYSLSV 167
Query: 335 DVGHIPLRLPRAKQLLATINKNFSTLAFCRRYLDRLGETKYLMALK 380
D + + + F T+A R LDR+G+ ++ K
Sbjct: 168 D------NFNEVLEEYPMMRRAFETVALDR--LDRIGKKNSILLHK 205
>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus
Carrying The S672r Mutation
Length = 205
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 12/106 (11%)
Query: 279 SIGR--YQIHAGKSVPIVKGGEQTKMEEGEFFAIETFASTGK--GYVREDLECSHYMKNF 334
+IG+ Y I G + KG ++TK+ +G +F + G+ VR D C Y +
Sbjct: 108 TIGKKMYFIQHGVVSVLTKGNKETKLADGSYFGEICLLTRGRRTARVRADTYCRLYSLSV 167
Query: 335 DVGHIPLRLPRAKQLLATINKNFSTLAFCRRYLDRLGETKYLMALK 380
D + + + F T+A R LDR+G+ ++ K
Sbjct: 168 D------NFNEVLEEYPMMRRAFETVALDR--LDRIGKKNSILLHK 205
>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U11|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Query: 279 SIGR--YQIHAGKSVPIVKGGEQTKMEEGEFFAIETFASTGK--GYVREDLECSHYMKNF 334
+IG+ Y I G + KG ++TK+ +G +F + G+ VR D C Y +
Sbjct: 114 TIGKKMYFIQHGVVSVLTKGNKETKLADGSYFGEICLLTRGRRTASVRADTYCRLYSLSV 173
Query: 335 DVGHIPLRLPRAKQLLATINKNFSTLAFCRRYLDRLGE 372
D + + + F T+A R LDR+G+
Sbjct: 174 D------NFNEVLEEYPMMRRAFETVALDR--LDRIGK 203
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,969,335
Number of Sequences: 62578
Number of extensions: 464591
Number of successful extensions: 1015
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 969
Number of HSP's gapped (non-prelim): 47
length of query: 425
length of database: 14,973,337
effective HSP length: 102
effective length of query: 323
effective length of database: 8,590,381
effective search space: 2774693063
effective search space used: 2774693063
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)