RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 014386
(425 letters)
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 686 bits (1773), Expect = 0.0
Identities = 271/460 (58%), Positives = 338/460 (73%), Gaps = 35/460 (7%)
Query: 1 MADENVSKEISIEENGTLESVNGNEEHSDVSSMQKDEEEEGKEVSSKKKKKKNKSKKKKE 60
+ +K+ ++ + +++ + ++ + + +E + ++KKKKKK K KKKK
Sbjct: 11 KQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKKKKKN 70
Query: 61 LP-----------------------------------QQTDPPSIPVVDLFPSGEFPEGE 85
L +QT PP+IPV F GE+P GE
Sbjct: 71 LGEAYDLAYDLPVVWSSAAFQDNSHIRKLGNWPEQEWKQTQPPTIPVSKQFKDGEYPVGE 130
Query: 86 IQQYKDDNLWRTTSEEKRELERLEKPKYNSVRQAAEVHRQVRKYIKSLLKPGMLMTDLCE 145
IQ+Y +N RT+SEEKRELE+L + +Y +R+AAEVHRQVR+Y +S++KPG+ + D+CE
Sbjct: 131 IQEYPGENSSRTSSEEKRELEKLSEEQYQDLRRAAEVHRQVRRYAQSVIKPGVKLIDICE 190
Query: 146 TLENTVRKLISENGLQAGIAFPTGCSLNWVAAHWTPNSGDKTVLQYDDVMKLDFGTHIDG 205
+E+ R+LI +GL+ G AFPTGCSLN AAH+TPN+GDKTVL YDDV KLDFGTH++G
Sbjct: 191 RIESKSRELIEADGLKCGWAFPTGCSLNHCAAHYTPNTGDKTVLTYDDVCKLDFGTHVNG 250
Query: 206 CIVDCAFTVAFNPVFDPLLEASREATNTGIKEAGIDVRLCDIGAAIQEVMESYEVEINGK 265
I+DCAFTVAFNP +DPLL+A+++ATNTGIKEAGIDVRL DIGAAIQEV+ESYEVEI GK
Sbjct: 251 RIIDCAFTVAFNPKYDPLLQATKDATNTGIKEAGIDVRLSDIGAAIQEVIESYEVEIKGK 310
Query: 266 VFQVKSIRNLNGHSIGRYQIHAGKSVPIVKGGEQTKMEEGEFFAIETFASTGKGYVREDL 325
+ +KSIRNLNGHSIG Y IH GKSVPIVKGGE T+MEEGE FAIETFASTG+GYV EDL
Sbjct: 311 TYPIKSIRNLNGHSIGPYIIHGGKSVPIVKGGENTRMEEGELFAIETFASTGRGYVNEDL 370
Query: 326 ECSHYMKNFDVGHIPLRLPRAKQLLATINKNFSTLAFCRRYLDRLGETKYLMALKNLCDT 385
ECSHYMK+ +PLRLP+AKQLL IN NF TLAFCRR+LDRLG+ ++L+ALK L D
Sbjct: 371 ECSHYMKDPGAEFVPLRLPKAKQLLKHINTNFGTLAFCRRWLDRLGQDRHLLALKQLVDA 430
Query: 386 GIVQPYPPLCDIKGSYVSQFEHTILLRPTCKEVISRGDDY 425
GIV PYPPLCD++GSY SQ EHTILLRPTCKEV+SRGDDY
Sbjct: 431 GIVNPYPPLCDVRGSYTSQMEHTILLRPTCKEVLSRGDDY 470
>gnl|CDD|238521 cd01088, MetAP2, Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 291
Score = 512 bits (1321), Expect = 0.0
Identities = 182/309 (58%), Positives = 223/309 (72%), Gaps = 18/309 (5%)
Query: 113 YNSVRQAAEVHRQVRKYIKSLLKPGMLMTDLCETLENTVRKLISENGLQAGIAFPTGCSL 172
R+A E+HRQVRKY +SL+KPGM + ++ E +EN +R+L AG AFP S+
Sbjct: 1 LEKYREAGEIHRQVRKYAQSLIKPGMTLLEIAEFVENRIRELG------AGPAFPVNLSI 54
Query: 173 NWVAAHWTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCAFTVAFNPVFDPLLEASREATN 232
N AAH+TPN+GD TVL+ DV+KLDFG H+DG I D AFTV F+P +D LLEA++EA N
Sbjct: 55 NECAAHYTPNAGDDTVLKEGDVVKLDFGAHVDGYIADSAFTVDFDPKYDDLLEAAKEALN 114
Query: 233 TGIKEAGIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKSVP 292
IKEAG DVRL +IG AI+EV+ESY K IRNL GHSI RY++HAGKS+P
Sbjct: 115 AAIKEAGPDVRLGEIGEAIEEVIESY---------GFKPIRNLTGHSIERYRLHAGKSIP 165
Query: 293 IVKGGEQTKMEEGEFFAIETFASTGKGYVREDLECSHYMKNFDVGHIPLRLPRAKQLLAT 352
VKGGE T++EEG+ +AIE FA+TGKGYV + ECS YM N D PLRLPRA++LL
Sbjct: 166 NVKGGEGTRLEEGDVYAIEPFATTGKGYVHDGPECSIYMLNRDK---PLRLPRARKLLDV 222
Query: 353 INKNFSTLAFCRRYLDRLGETKYLMALKNLCDTGIVQPYPPLCDIKGSYVSQFEHTILLR 412
I +NF TL F RR+LDRLGETK LMALKNLC GIV PYP L +I G YV+QFEHTI++R
Sbjct: 223 IYENFGTLPFARRWLDRLGETKLLMALKNLCKAGIVYPYPVLKEISGGYVAQFEHTIIVR 282
Query: 413 PTCKEVISR 421
KEV +R
Sbjct: 283 EDGKEVTTR 291
>gnl|CDD|129592 TIGR00501, met_pdase_II, methionine aminopeptidase, type II.
Methionine aminopeptidase (map) is a cobalt-binding
enzyme. Bacterial and organellar examples (type I)
differ from eukaroytic and archaeal (type II) examples
in lacking a region of approximately 60 amino acids
between the 4th and 5th cobalt-binding ligands. The role
of this protein in general is to produce the mature
amino end of cytosolic proteins by removing the
N-terminal methionine. This model describes type II,
among which the eukaryotic members typically have an
N-terminal extension not present in archaeal members. It
can act cotranslationally. The enzyme from rat has been
shown to associate with translation initiation factor 2
(IF-2) and may have a role in translational regulation
[Protein fate, Protein modification and repair].
Length = 295
Score = 330 bits (848), Expect = e-112
Identities = 141/318 (44%), Positives = 197/318 (61%), Gaps = 23/318 (7%)
Query: 104 ELERLEKPKYNSVRQAAEVHRQVRKYIKSLLKPGMLMTDLCETLENTVRKLISENGLQAG 163
++ER EK +A ++H +VR+ + PG+ + ++ E +EN +R+L +E
Sbjct: 1 DIERAEK-----WIEAGKIHSKVRREAADRIVPGVKLLEVAEFVENRIRELGAEP----- 50
Query: 164 IAFPTGCSLNWVAAHWTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCAFTVAFNPVFDPL 223
AFP S+N AAH+TP +GDKTV + DV+KLD G H+DG I D A TV +D L
Sbjct: 51 -AFPCNISINECAAHFTPKAGDKTVFKDGDVVKLDLGAHVDGYIADTAITVDLGDQYDNL 109
Query: 224 LEASREATNTGIKEAGIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRY 283
++A+++A T IKE VR+ +IG AIQEV+ESY VK I NL GHS+ Y
Sbjct: 110 VKAAKDALYTAIKEIRAGVRVGEIGKAIQEVIESY---------GVKPISNLTGHSMAPY 160
Query: 284 QIHAGKSVPIVKGGEQTKMEEGEFFAIETFASTGKGYVREDLECSHYMKNFDVGHIPLRL 343
++H GKS+P VK + TK+EEG+ AIE FA+ G GYV + E S Y F P+RL
Sbjct: 161 RLHGGKSIPNVKERDTTKLEEGDVVAIEPFATDGVGYVTDGGEVSIY--AFLAER-PVRL 217
Query: 344 PRAKQLLATINKNFSTLAFCRRYLDRLGETKYLMALKNLCDTGIVQPYPPLCDIKGSYVS 403
A+ LL TI++N+ TL F RR+LD+LG+ KYL AL NL G++ YP L +I G YV+
Sbjct: 218 DSARNLLKTIDENYGTLPFARRWLDKLGDEKYLFALNNLIRHGLIYDYPVLNEISGGYVA 277
Query: 404 QFEHTILLRPTCKEVISR 421
Q+EHTIL+ KEV ++
Sbjct: 278 QWEHTILVEEHGKEVTTK 295
>gnl|CDD|181534 PRK08671, PRK08671, methionine aminopeptidase; Provisional.
Length = 291
Score = 285 bits (732), Expect = 2e-94
Identities = 117/298 (39%), Positives = 168/298 (56%), Gaps = 19/298 (6%)
Query: 113 YNSVRQAAEVHRQVRKYIKSLLKPGMLMTDLCETLENTVRKLISENGLQAGIAFPTGCSL 172
+A ++ +VR+ L+KPG + D+ E +EN +R E G A AFP S+
Sbjct: 2 LEKYLEAGKIASKVREEAAKLIKPGAKLLDVAEFVENRIR----ELG--AKPAFPCNISI 55
Query: 173 NWVAAHWTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCAFTVAFNPVFDPLLEASREATN 232
N VAAH+TP+ GD+ V DV+KLD G H+DG I D A TV ++ L+EAS EA
Sbjct: 56 NEVAAHYTPSPGDERVFPEGDVVKLDLGAHVDGYIADTAVTVDLGGKYEDLVEASEEALE 115
Query: 233 TGIKEAGIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKSVP 292
I+ V + +IG I+E + SY G F K IRNL GH + RY++HAG S+P
Sbjct: 116 AAIEVVRPGVSVGEIGRVIEETIRSY-----G--F--KPIRNLTGHGLERYELHAGPSIP 166
Query: 293 IVKGGEQTKMEEGEFFAIETFASTGKGYVREDLECSHYMKNFDVGHIPLRLPRAKQLLAT 352
G K+EEG+ +AIE FA+ G+G V E E Y + + P+RLP A++LL
Sbjct: 167 NYDEGGGVKLEEGDVYAIEPFATDGEGKVVEGPEVEIYSL---LRNRPVRLPAARKLLEE 223
Query: 353 INKNFSTLAFCRRYLDRLGETKYLMALKNLCDTGIVQPYPPLCDIKGSYVSQFEHTIL 410
I + ++TL F R+L+ L + + L+ L G + YP L ++KG VSQ EHT++
Sbjct: 224 IEEEYNTLPFAERWLEGLFG-EDKLELRRLLKAGALYGYPVLKEVKGGLVSQAEHTVI 280
>gnl|CDD|223103 COG0024, Map, Methionine aminopeptidase [Translation, ribosomal
structure and biogenesis].
Length = 255
Score = 197 bits (504), Expect = 7e-61
Identities = 84/222 (37%), Positives = 113/222 (50%), Gaps = 21/222 (9%)
Query: 113 YNSVRQAAEVHRQVRKYIKSLLKPGMLMTDLCETLENTVRK---LISENGLQAGIAFPTG 169
+R+A ++ + K + SL+KPG+ +L E E +R+ + G + G FPT
Sbjct: 11 IEKMREAGKIAAKALKEVASLVKPGVTTLELDEIAEEFIREKGAYPAFLGYK-GFPFPTC 69
Query: 170 CSLNWVAAHWTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCAFTVAFNPVFDP----LLE 225
S+N V AH P DK VL+ D++K+D G HIDG I D A T V D LLE
Sbjct: 70 ISVNEVVAHGIPG--DKKVLKEGDIVKIDVGAHIDGYIGDTAITFVVGEVSDEDAKRLLE 127
Query: 226 ASREATNTGIKEAGIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQI 285
A++EA GI+ RL DIG AIQE ES +RNL GH IGR ++
Sbjct: 128 ATKEALYAGIEAVKPGARLGDIGRAIQEYAESR---------GFSVVRNLTGHGIGR-EL 177
Query: 286 HAGKSVPIV-KGGEQTKMEEGEFFAIETFASTGKGYVREDLE 326
H S+P K G +++EG FAIE +TG G V E
Sbjct: 178 HEEPSIPNYGKDGTGVRLKEGMVFAIEPMINTGSGEVVEGPS 219
Score = 37.6 bits (88), Expect = 0.008
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 394 LCDIKGSYVSQFEHTILLRPTCKEVISRGDDY 425
L GS +QFEHT+++ E+++ +
Sbjct: 224 LVTKDGSLSAQFEHTVIVTEDGCEILTLRPEE 255
>gnl|CDD|215993 pfam00557, Peptidase_M24, Metallopeptidase family M24. This family
contains metallopeptidases. It also contains
non-peptidase homologues such as the N terminal domain
of Spt16 which is a histone H3-H4 binding module.
Length = 208
Score = 114 bits (288), Expect = 6e-30
Identities = 58/217 (26%), Positives = 81/217 (37%), Gaps = 27/217 (12%)
Query: 117 RQAAEVHRQVRKYIKSLLKPGMLMTDLCETLENTVRKLISENGLQAGIAFPT--GCSLNW 174
R+AA + + + ++PG+ +L LE G + G AFP N
Sbjct: 4 RKAARIAAAALEAALAAIRPGVTERELAAELEAAFLA---RGGAR-GPAFPPIVASGPNA 59
Query: 175 VAAHWTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCAFTVAFNPVFDP----LLEASREA 230
H+ P+ VL+ D++ +D G DG D T P L EA EA
Sbjct: 60 AVPHYIPS---DRVLKDGDLVLIDVGAEYDGYHSDITRTFVVGK-PTPEQRELYEAVLEA 115
Query: 231 TNTGIKEAGIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKS 290
I V D+ AA +EV+E + GH IG +H
Sbjct: 116 QEAAIAAVKPGVTGGDVDAAAREVLEEGGYGEY--------FPHGLGHGIGL-DVHDEGP 166
Query: 291 VPIVKGGEQTKMEEGEFFAIE--TFASTGKGYVR-ED 324
I +GG +E G F IE + G G VR ED
Sbjct: 167 Y-ISRGGNDRVLEPGMVFTIEPGIYFIPGWGGVRIED 202
>gnl|CDD|129586 TIGR00495, crvDNA_42K, 42K curved DNA binding protein. Proteins
identified by This model have been identified in a
number of species as a nuclear (but not nucleolar)
protein with a cell cycle dependence. Various names
given to members of this family have included cell cycle
protein p38-2G4, DNA-binding protein GBP16, and
proliferation-associated protein 1. This protein is
closely related to methionine aminopeptidase, a
cobolt-binding protein [Unknown function, General].
Length = 389
Score = 112 bits (282), Expect = 1e-27
Identities = 85/329 (25%), Positives = 143/329 (43%), Gaps = 30/329 (9%)
Query: 112 KYNSVRQAAEVHRQVRKYIKSLLKPGMLMTDLCE-----TLENTVRKLISENGLQAGIAF 166
KY A E+ V K + PG + D+CE +E T + E ++ GIAF
Sbjct: 21 KYKM---AGEIANNVLKSVVEACSPGAKVVDICEKGDAFIMEETAKIFKKEKEMEKGIAF 77
Query: 167 PTGCSLNWVAAHWTPNSGDKT-VLQYDDVMKLDFGTHIDGCIVDCAFTVAFN-----PVF 220
PT S+N H++P D+ +L+ DV+K+D G HIDG I A T PV
Sbjct: 78 PTCISVNNCVGHFSPLKSDQDYILKEGDVVKIDLGCHIDGFIALVAHTFVVGVAQEEPVT 137
Query: 221 DPLLEASREATNTGIKEAGIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSI 280
+ A + + A +RL G +V E+ + + + + H +
Sbjct: 138 GRKADVIA-AAHLAAEAA---LRLVKPGNTNTQVTEA--INKVAHSYGCTPVEGMLSHQL 191
Query: 281 GRYQIHAGKSVPIVKGGEQTK------MEEGEFFAIETFASTGKGYVRE-DLECSHYMKN 333
++ I K + Q K EE E +A++ STG+G ++ D + Y ++
Sbjct: 192 KQHVIDGEKVIISNPSDSQKKDHDTAEFEENEVYAVDILVSTGEGKAKDADQRTTIYKRD 251
Query: 334 FDVGHIPLRLPRAKQLLATINKNFSTLAFCRRYLDRLGETKYLMALKNLCDTGIVQPYPP 393
+ L++ ++ + I + F + F R + E + M L ++QPYP
Sbjct: 252 PSKTYG-LKMKASRAFFSEIERRFDAMPFTLRNFE--DEKRARMGLVECVKHELLQPYPV 308
Query: 394 LCDIKGSYVSQFEHTILLRPTCKEVISRG 422
L + +G +V+QF+ T+LL P I+ G
Sbjct: 309 LYEKEGEFVAQFKFTVLLMPNGPMRITSG 337
>gnl|CDD|238519 cd01086, MetAP1, Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and Peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 238
Score = 102 bits (258), Expect = 2e-25
Identities = 64/221 (28%), Positives = 94/221 (42%), Gaps = 33/221 (14%)
Query: 117 RQAAEVHRQVRKYIKSLLKPGMLMTDLCETLENTVRKLISENGLQAGIA------FP-TG 169
R+A + +V + +KPG+ +L + + I E+G A A FP +
Sbjct: 5 REAGRIVAEVLDELAKAIKPGVTTKEL----DQIAHEFIEEHG--AYPAPLGYYGFPKSI 58
Query: 170 C-SLNWVAAHWTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCAFTVAFNPVFDP----LL 224
C S+N V H P D VL+ D++ +D G +DG D A T V L+
Sbjct: 59 CTSVNEVVCHGIP---DDRVLKDGDIVNIDVGVELDGYHGDSARTFIVGEV-SEEAKKLV 114
Query: 225 EASREATNTGIKEAGIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQ 284
E + EA GI+ R+ DIG AI++ E NG + V +R GH IGR
Sbjct: 115 EVTEEALYKGIEAVKPGNRIGDIGHAIEKYAEK-----NG--YSV--VREFGGHGIGRK- 164
Query: 285 IHAGKSVPIV-KGGEQTKMEEGEFFAIETFASTGKGYVRED 324
H +P + G K++ G F IE + G V
Sbjct: 165 FHEEPQIPNYGRPGTGPKLKPGMVFTIEPMINLGTYEVVTL 205
Score = 28.2 bits (64), Expect = 6.9
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 398 KGSYVSQFEHTIL 410
GS +QFEHT+L
Sbjct: 215 DGSLSAQFEHTVL 227
>gnl|CDD|238514 cd01066, APP_MetAP, A family including aminopeptidase P,
aminopeptidase M, and prolidase. Also known as
metallopeptidase family M24. This family of enzymes is
able to cleave amido-, imido- and amidino-containing
bonds. Members exibit relatively narrow substrate
specificity compared to other metallo-aminopeptidases,
suggesting they play roles in regulation of biological
processes rather than general protein degradation.
Length = 207
Score = 96.8 bits (241), Expect = 3e-23
Identities = 56/216 (25%), Positives = 85/216 (39%), Gaps = 28/216 (12%)
Query: 116 VRQAAEVHRQVRKYIKSLLKPGMLMTDLCETLENTVRKLISENGLQAGIAFPTGCSLNWV 175
+R+AAE+ ++PG+ ++ +E +R A PT
Sbjct: 4 LRKAAEIAEAAMAAAAEAIRPGVTEAEVAAAIEQALRAAG------GYPAGPTIVGSGAR 57
Query: 176 AA--HWTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCAFTVAFNPVFDP---LLEASREA 230
A H+ P+ LQ D++ +D G DG D T D L EA REA
Sbjct: 58 TALPHYRPDD---RRLQEGDLVLVDLGGVYDGYHADLTRTFVIGEPSDEQRELYEAVREA 114
Query: 231 TNTGIKEAGIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKS 290
+ V ++ AA +EV+E + + N + GH IG +IH
Sbjct: 115 QEAALAALRPGVTAEEVDAAAREVLEEHGLGPN--------FGHRTGHGIG-LEIHEP-- 163
Query: 291 VPIVKGGEQTKMEEGEFFAIETF--ASTGKGYVRED 324
P++K G+ T +E G FA+E G G ED
Sbjct: 164 -PVLKAGDDTVLEPGMVFAVEPGLYLPGGGGVRIED 198
>gnl|CDD|237252 PRK12896, PRK12896, methionine aminopeptidase; Reviewed.
Length = 255
Score = 93.4 bits (233), Expect = 1e-21
Identities = 59/233 (25%), Positives = 92/233 (39%), Gaps = 38/233 (16%)
Query: 103 RELERLEKPKYNSVRQAAEVHRQVRKYIKSLLKPGMLMTDLCETLENTVRKLISENGLQA 162
RELE++ R+ + K + ++PGM +L + K + E+G
Sbjct: 14 RELEKM--------RKIGRIVATALKEMGKAVEPGMTTKEL----DRIAEKRLEEHGAIP 61
Query: 163 GI----AFPTGC--SLNWVAAHWTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCAFTVAF 216
FP S+N AH P V++ D++ +D ++DG D T A
Sbjct: 62 SPEGYYGFPGSTCISVNEEVAHGIPGP---RVIKDGDLVNIDVSAYLDGYHGDTGITFAV 118
Query: 217 NPVFDP----LLEASREATNTGIKEAGIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSI 272
PV L + EA GIK+ L DIG AI++ + NG + V +
Sbjct: 119 GPV-SEEAEKLCRVAEEALWAGIKQVKAGRPLNDIGRAIED-----FAKKNG--YSV--V 168
Query: 273 RNLNGHSIGRYQIHAGKSVPIVKG--GEQTKMEEGEFFAIETFASTGKGYVRE 323
R+L GH +GR +H SV + + G A+E F + G
Sbjct: 169 RDLTGHGVGR-SLHEEPSVILTYTDPLPNRLLRPGMTLAVEPFLNLGAKDAET 220
>gnl|CDD|235576 PRK05716, PRK05716, methionine aminopeptidase; Validated.
Length = 252
Score = 85.2 bits (212), Expect = 6e-19
Identities = 67/238 (28%), Positives = 97/238 (40%), Gaps = 45/238 (18%)
Query: 102 KRELERLEKPKYNSVRQAAEVHRQVRKYIKSLLKPGMLMTDLCETLE--NTVRKLISENG 159
E+E++ + R AAEV ++ ++K PG+ T E + I + G
Sbjct: 8 PEEIEKMRV----AGRLAAEVLDEIEPHVK----PGV------TTKELDRIAEEYIRDQG 53
Query: 160 LQAGIAFPTG--------C-SLNWVAAHWTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDC 210
I P G C S+N V H P VL+ D++ +D DG D
Sbjct: 54 ---AIPAPLGYHGFPKSICTSVNEVVCHGIP---SDKVLKEGDIVNIDVTVIKDGYHGDT 107
Query: 211 AFTVAF---NPVFDPLLEASREATNTGIKEAGIDVRLCDIGAAIQEVMESYEVEINGKVF 267
+ T +P L E ++EA GI RL DIG AIQ+ E+ G F
Sbjct: 108 SRTFGVGEISPEDKRLCEVTKEALYLGIAAVKPGARLGDIGHAIQKYAEA-----EG--F 160
Query: 268 QVKSIRNLNGHSIGRYQIHAGKSVP-IVKGGEQTKMEEGEFFAIETFASTGKGYVRED 324
V +R GH IGR + H +P G+ ++EG F IE + GK V+
Sbjct: 161 SV--VREYCGHGIGR-KFHEEPQIPHYGAPGDGPVLKEGMVFTIEPMINAGKREVKTL 215
>gnl|CDD|129591 TIGR00500, met_pdase_I, methionine aminopeptidase, type I.
Methionine aminopeptidase is a cobalt-binding enzyme.
Bacterial and organellar examples (type I) differ from
eukaroytic and archaeal (type II) examples in lacking a
region of approximately 60 amino acids between the 4th
and 5th cobalt-binding ligands. This model describes
type I. The role of this protein in general is to
produce the mature form of cytosolic proteins by
removing the N-terminal methionine [Protein fate,
Protein modification and repair].
Length = 247
Score = 83.2 bits (206), Expect = 4e-18
Identities = 65/233 (27%), Positives = 104/233 (44%), Gaps = 35/233 (15%)
Query: 102 KRELERLEKPKYNSVRQAAEVHRQVRKYIKSLLKPGMLMTDLCETLENTVRKLISENGLQ 161
E+E++ R+A + +V + ++ +KPG+ +L + + I ++G +
Sbjct: 6 PDEIEKI--------RKAGRLAAEVLEELEREVKPGVSTKEL----DRIAKDFIEKHGAK 53
Query: 162 AGI----AFP-TGC-SLNWVAAHWTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCAFTVA 215
FP + C S+N V H P DK VL+ D++ +D G DG D A T
Sbjct: 54 PAFLGYYGFPGSVCISVNEVVIHGIP---DKKVLKDGDIVNIDVGVIYDGYHGDTAKTFL 110
Query: 216 FN---PVFDPLLEASREATNTGIKEAGIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSI 272
P + LLE + E+ I+EA R+ +IGAAIQ+ E+ F V +
Sbjct: 111 VGKISPEAEKLLECTEESLYKAIEEAKPGNRIGEIGAAIQKYAEAKG-------FSV--V 161
Query: 273 RNLNGHSIGRYQIHAGKSVP-IVKGGEQTKMEEGEFFAIETFASTGKGYVRED 324
R GH IGR + H +P K +++EG F IE +TG +
Sbjct: 162 REYCGHGIGR-KFHEEPQIPNYGKKFTNVRLKEGMVFTIEPMVNTGTEEITTA 213
>gnl|CDD|238522 cd01089, PA2G4-like, Related to aminopepdidase M, this family
contains proliferation-associated protein 2G4. Family
members have been implicated in cell cycle control.
Length = 228
Score = 68.9 bits (169), Expect = 2e-13
Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 9/109 (8%)
Query: 112 KYNSVRQAAEVHRQVRKYIKSLLKPGMLMTDLCETLENTVRKLI-----SENGLQAGIAF 166
KY + A ++ +V K + SL PG + DLCE + + + + E L+ GIAF
Sbjct: 3 KY---KTAGQIANKVLKQVISLCVPGAKVVDLCEKGDKLILEELGKVYKKEKKLEKGIAF 59
Query: 167 PTGCSLNWVAAHWTPNSGDKTV-LQYDDVMKLDFGTHIDGCIVDCAFTV 214
PT S+N H++P D T L+ DV+K+D G HIDG I A T+
Sbjct: 60 PTCISVNNCVCHFSPLKSDATYTLKDGDVVKIDLGCHIDGYIAVVAHTI 108
Score = 34.6 bits (80), Expect = 0.061
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 386 GIVQPYPPLCDIKGSYVSQFEHTILLRP 413
G++ PYP L + +G V+QF+ T+LL P
Sbjct: 193 GLLFPYPVLYEKEGEVVAQFKLTVLLTP 220
>gnl|CDD|180918 PRK07281, PRK07281, methionine aminopeptidase; Reviewed.
Length = 286
Score = 66.0 bits (161), Expect = 5e-12
Identities = 77/282 (27%), Positives = 115/282 (40%), Gaps = 68/282 (24%)
Query: 98 TSEEKRELERLEKPKYNSVRQAAEVHRQVRKYIKSLLKPGMLMTDLCETLENTVRKLISE 157
T + RE+E +++ + A +H +R L+KPG+ M ++ E VR+ E
Sbjct: 3 TLKSAREIEAMDR----AGDFLASIHIGLRD----LIKPGVDMWEV----EEYVRRRCKE 50
Query: 158 NG---LQAGI-------AFPTGCSLNWVAAHWTPN-----SGDKTVLQYD---------- 192
LQ G+ + T C LN AH P GD +L+ D
Sbjct: 51 ENVLPLQIGVDGAMMDYPYATCCGLNDEVAHAFPRHYILKEGD--LLKVDMVLSEPLDKS 108
Query: 193 --DVMKLDFGT---------HIDGCIVDCAFTVAFNPVFDP---LLEASREATNTGIKEA 238
DV KL+F G + D + A D L++ ++EA GI++A
Sbjct: 109 IVDVSKLNFDNVEQMKKYTESYRGGLADSCWAYAVGTPSDEVKNLMDVTKEAMYRGIEQA 168
Query: 239 GIDVRLCDIGAAIQEVMES--YEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKSVPIV-K 295
+ R+ DIGAAIQE ES Y V +R+L GH +G +H VP
Sbjct: 169 VVGNRIGDIGAAIQEYAESRGYGV-----------VRDLVGHGVGP-TMHEEPMVPNYGT 216
Query: 296 GGEQTKMEEGEFFAIETFASTGKGYVREDLECSHYMKNFDVG 337
G ++ EG IE +TG + D++ K D G
Sbjct: 217 AGRGLRLREGMVLTIEPMINTGTWEIDTDMKTGWAHKTLDGG 258
>gnl|CDD|238525 cd01092, APP-like, Similar to Prolidase and Aminopeptidase P. The
members of this subfamily presumably catalyse hydrolysis
of Xaa-Pro dipeptides and/or release of any N-terminal
amino acid, including proline, that is linked with
proline.
Length = 208
Score = 57.5 bits (140), Expect = 1e-09
Identities = 55/200 (27%), Positives = 84/200 (42%), Gaps = 25/200 (12%)
Query: 117 RQAAEVHRQVRKYIKSLLKPGMLMTDLCETLENTVRKLISENGLQAGIAFPTGCSLNWVA 176
R+AA + + + + +KPGM ++ LE +RKL +E G +F T + +
Sbjct: 5 RKAARIADKAFEELLEFIKPGMTEREVAAELEYFMRKLGAE-----GPSFDTIVASGPNS 59
Query: 177 A--HWTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCAFTVAFNPVFDPLLE---ASREAT 231
A H P ++ D++ +DFG DG D TVA D L E EA
Sbjct: 60 ALPHGVP---SDRKIEEGDLVLIDFGAIYDGYCSDITRTVAVGEPSDELKEIYEIVLEAQ 116
Query: 232 NTGIKEAGIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKSV 291
IK V ++ A ++V+E G+ F I GH +G ++H
Sbjct: 117 QAAIKAVKPGVTAKEVDKAARDVIEEAGY---GEYF----IHRT-GHGVGL-EVHEA--- 164
Query: 292 PIVKGGEQTKMEEGEFFAIE 311
P + G +EEG F IE
Sbjct: 165 PYISPGSDDVLEEGMVFTIE 184
>gnl|CDD|171806 PRK12897, PRK12897, methionine aminopeptidase; Reviewed.
Length = 248
Score = 53.9 bits (129), Expect = 3e-08
Identities = 64/234 (27%), Positives = 105/234 (44%), Gaps = 27/234 (11%)
Query: 98 TSEEKRELERLEKPKYNSVRQAAEVHRQVRKYIKSLLKPGMLMTDLCETLENTVRK--LI 155
T + K E++ + + S + A HR++ K ++KPG+ ++ +E + K
Sbjct: 3 TIKTKNEIDLM----HESGKLLASCHREIAK----IMKPGITTKEINTFVEAYLEKHGAT 54
Query: 156 SENGLQAGIAFPTGCSLNWVAAHWTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCAFTVA 215
SE G + S+N H P L D++ +D +++G + D A+T
Sbjct: 55 SEQKGYNGYPYAICASVNDEMCHAFPAD---VPLTEGDIVTIDMVVNLNGGLSDSAWTYR 111
Query: 216 FNPVFDP---LLEASREATNTGIKEAGIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSI 272
V D LL + A GI +A I R+ DIG AI ESY + + F V
Sbjct: 112 VGKVSDEAEKLLLVAENALYKGIDQAVIGNRVGDIGYAI----ESY---VANEGFSVA-- 162
Query: 273 RNLNGHSIGRYQIHAGKSV-PIVKGGEQTKMEEGEFFAIETFASTGKGYVREDL 325
R+ GH IG+ +IH ++ K G+ +++EG IE + G Y + DL
Sbjct: 163 RDFTGHGIGK-EIHEEPAIFHFGKQGQGPELQEGMVITIEPIVNVGMRYSKVDL 215
>gnl|CDD|223085 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and
metabolism].
Length = 384
Score = 49.3 bits (118), Expect = 2e-06
Identities = 58/237 (24%), Positives = 91/237 (38%), Gaps = 44/237 (18%)
Query: 102 KRELERLEKPKYNSVRQAAEVHRQVRKYIKSLLKPGMLMTDLCETLENTVRKLISENGLQ 161
E+ ++ K + A + I+ PGM ++ LE +RK +E
Sbjct: 157 PAEIAKIRK----AAEIADAALEAALEAIR----PGMTEAEIAAELEYALRKGGAE---- 204
Query: 162 AGIAFPTGCSLNWVAA--HWTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCAFTVAFNPV 219
G +F T + AA H+TP D+ L+ D++ +D G +G D T
Sbjct: 205 -GPSFDTIVASGENAALPHYTP--SDRK-LRDGDLVLIDLGGVYNGYCSDITRTFPIGKP 260
Query: 220 FD---PLLEASREATNTGIKEAGID-----VRLCDIGAAIQEVMESYEVEINGKVFQVKS 271
D + EA EA +EA I V ++ AA ++V+E +
Sbjct: 261 SDEQREIYEAVLEA-----QEAAIAAIRPGVTGGEVDAAARQVLEKAGYGLY-------- 307
Query: 272 IRNLNGHSIGRY-QIHAGKSVPIVKGGEQTKMEEGEFFAIET-FASTGKGYVR-EDL 325
+ GH +G +H + G T +E G F+IE G G VR ED
Sbjct: 308 FLHGTGHGVGFVLDVHEHPQ--YLSPGSDTTLEPGMVFSIEPGIYIPGGGGVRIEDT 362
>gnl|CDD|183434 PRK12318, PRK12318, methionine aminopeptidase; Provisional.
Length = 291
Score = 45.2 bits (107), Expect = 3e-05
Identities = 45/158 (28%), Positives = 64/158 (40%), Gaps = 18/158 (11%)
Query: 166 FP-TGC-SLNWVAAHWTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCAFTVAFNPVFD-- 221
FP T C SLN V H PN L+ D+M +D +DG DC+ V V +
Sbjct: 104 FPKTICTSLNEVICHGIPND---IPLKNGDIMNIDVSCIVDGYYGDCSRMVMIGEVSEIK 160
Query: 222 -PLLEASREATNTGIKEAGIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSI 280
+ +AS E N I + L +IG I+ + Y + V Q GH +
Sbjct: 161 KKVCQASLECLNAAIAILKPGIPLYEIGEVIENCADKYGFSV---VDQ------FVGHGV 211
Query: 281 GRYQIHAGKSVPIVKGGEQTKMEEGEFFAIETFASTGK 318
G + H VP + + + G F IE + GK
Sbjct: 212 G-IKFHENPYVPHHRNSSKIPLAPGMIFTIEPMINVGK 248
>gnl|CDD|227880 COG5593, COG5593, Nucleic-acid-binding protein possibly involved in
ribosomal biogenesis [Translation, ribosomal structure
and biogenesis].
Length = 821
Score = 41.2 bits (96), Expect = 0.001
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 3 DENVSKEISIEENGTLESVNGNEEHSDV--SSMQKDEEEEGKEVSSKKKKKKNKSKKKKE 60
+E + EI +G ++ + E S+ SS ++ EEEE KEVS+K+ KKK + K
Sbjct: 747 EEGLD-EIFYSFDGEQDNSDSFAESSEEDESSEEEKEEEENKEVSAKRAKKKQRKNMLKS 805
Query: 61 LP 62
LP
Sbjct: 806 LP 807
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 37.4 bits (86), Expect = 0.014
Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 8/130 (6%)
Query: 4 ENVSKEISIEENGTLESVNGNEEHSDVSSMQKDEEEEGKEVSSKKKKKKNKSKKKKELPQ 63
E V K E+ E EE + K EEE K+V KKK+ + KK +EL +
Sbjct: 1595 EEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKK 1654
Query: 64 QTDPPSIPVVDLF--------PSGEFPEGEIQQYKDDNLWRTTSEEKRELERLEKPKYNS 115
+ I + + E + E + K + +EE ++ E L+K +
Sbjct: 1655 AEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEE 1714
Query: 116 VRQAAEVHRQ 125
++A E+ +
Sbjct: 1715 KKKAEELKKA 1724
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein.
Genome duplication is precisely regulated by
cyclin-dependent kinases CDKs, which bring about the
onset of S phase by activating replication origins and
then prevent relicensing of origins until mitosis is
completed. The optimum sequence motif for CDK
phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found
to have at least 11 potential phosphorylation sites.
Drc1 is required for DNA synthesis and S-M replication
checkpoint control. Drc1 associates with Cdc2 and is
phosphorylated at the onset of S phase when Cdc2 is
activated. Thus Cdc2 promotes DNA replication by
phosphorylating Drc1 and regulating its association with
Cut5. Sld2 and Sld3 represent the minimal set of S-CDK
substrates required for DNA replication.
Length = 397
Score = 35.5 bits (82), Expect = 0.042
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 1 MADENVSKEISIEENGTLESVNGNEEHSDVSSMQKDEEEEGKEVSSKKKKKKNKSKKK 58
+ + ++ +EI + +L G D +D+EE +EV K+K KK K+K
Sbjct: 311 LPESDIHEEIPKLDEKSLSEFLGYMGGIDEDDEDEDDEESKEEVEKKQKVKKKPRKRK 368
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 35.1 bits (81), Expect = 0.066
Identities = 20/67 (29%), Positives = 31/67 (46%)
Query: 1 MADENVSKEISIEENGTLESVNGNEEHSDVSSMQKDEEEEGKEVSSKKKKKKNKSKKKKE 60
++ V KE+ EE + EE ++ +EEE KE KK KK ++ + E
Sbjct: 26 WVEKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWE 85
Query: 61 LPQQTDP 67
L +T P
Sbjct: 86 LLNKTKP 92
>gnl|CDD|222466 pfam13945, NST1, Splicing factor, salt tolerance regulator. NST1
is a family of proteins that seem to be involved,
directly or indirectly, in the salt sensitivity of some
cellular functions in yeast. These proteins also
interact with the splicing factor Msl1p.
Length = 189
Score = 33.4 bits (76), Expect = 0.13
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 15/96 (15%)
Query: 27 HSDVSSMQKDEEEEGKEVSSKKKKKKNKSKKKK---------------ELPQQTDPPSIP 71
HS ++ + + SSK KKKK K K P P
Sbjct: 12 HSQQNTDELNTVIHNDSSSSKSKKKKKKRSKATSPSHNASDQSTNNVMSTPSAILARPQP 71
Query: 72 VVDLFPSGEFPEGEIQQYKDDNLWRTTSEEKRELER 107
+ F S + + ++ K+ +W T+++E+RE R
Sbjct: 72 LSYPFGSQQSQQNAVKNSKEKRIWNTSTQEERENIR 107
>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional.
Length = 135
Score = 32.4 bits (74), Expect = 0.17
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 24 NEEHSDVSSMQKDEEEEGKEVSSKKKKKKNKSKKKK 59
EE V + K++ ++ K+ KKKKKK K+ KK
Sbjct: 95 VEEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKA 130
>gnl|CDD|235219 PRK04098, PRK04098, sec-independent translocase; Provisional.
Length = 158
Score = 31.6 bits (72), Expect = 0.35
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 2 ADENVSKEISIEENGTLESVNGNEEHSDVSSMQ--KDEEEEGKEVSSKKKKKKNKSKKKK 59
A E++ K++ EE L+ NE S +Q K EE + ++ N++K +
Sbjct: 73 AVESLKKKLKFEELDDLKITAENEIKSIQDLLQDYKKSLEEDTIPNHLNEEVSNETKLTQ 132
Query: 60 ELPQQTDPPSI 70
E P +
Sbjct: 133 ESSSDESPKEV 143
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function
(DUF1754). This is a eukaryotic protein family of
unknown function.
Length = 90
Score = 30.5 bits (69), Expect = 0.42
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 11/77 (14%)
Query: 41 GKEVSSKKKKKKNK--SKKKKELPQQTDPPSIPV--VDLFPSGEFPEGEIQQYKDDNLWR 96
GK++ KKKKKK K +K K+E+ + + DL E + E + ++D +
Sbjct: 14 GKKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLKEGEEDEDNEKIEQEEDGMNL 73
Query: 97 TTSE-------EKRELE 106
T +E KR E
Sbjct: 74 TEAERAFEEAQRKRLKE 90
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 31.6 bits (72), Expect = 0.43
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 35 KDEEEEGKEVSSKKKKKKNKSKKKKELPQQTDPPSIPVVDLFP 77
KD++++ K+ S+KK +K K ++L + + +L P
Sbjct: 99 KDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLSELKP 141
Score = 28.5 bits (64), Expect = 4.6
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 10/82 (12%)
Query: 33 MQKDEEEEGKEVSSKKKKKKNKSKKKKELPQQTDPPSIPVVDLFPSGEFPEGEIQQYK-- 90
+ ++ E+ KE K+K K K K KK+ + D D + E + K
Sbjct: 67 LAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDD--------KSEKKDEKEA 118
Query: 91 DDNLWRTTSEEKRELERLEKPK 112
+D L T L L + K
Sbjct: 119 EDKLEDLTKSYSETLSTLSELK 140
Score = 28.1 bits (63), Expect = 7.3
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 29 DVSSMQKDEEEEGKEVSSKKKKKKNKSKKKKELPQQTD 66
++ ++K+ EE+ K KKK KK K K K + + D
Sbjct: 70 EIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKD 107
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 32.8 bits (75), Expect = 0.46
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 8 KEISIEENGTLESVNGNEEH--SDVSSMQKDEEEEGKEVSSKK--KKKKNKSKKKKEL 61
+E G LES + + S +S+ +K+ EE+ E KK KK+ KS + EL
Sbjct: 1526 EEKEPAGQGELESDKEKKGNLESVLSNQEKNIEEDYAESDIKKRKNKKQYKSNTEAEL 1583
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 32.7 bits (74), Expect = 0.48
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 3 DENVSKEISIEENGTLESVNGNEEHSDVSSMQKDEEEEGKE--VSSKKKKKKNKSKKKKE 60
DE + E +EEN TL+ ++ SD++ + E+G E V ++ ++ K +E
Sbjct: 4028 DEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEE 4087
Query: 61 LPQQTDP 67
L Q P
Sbjct: 4088 LEQGEVP 4094
>gnl|CDD|224674 COG1760, SdaA, L-serine deaminase [Amino acid transport and
metabolism].
Length = 262
Score = 31.8 bits (73), Expect = 0.49
Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 14/84 (16%)
Query: 248 GAAIQEVMESYEVEINGK---------VFQVKS---IRNLNGHSIGRYQIHAGKSVPIVK 295
G +I E+M + E+ + GK VF + I + H+ G +I G+ +
Sbjct: 11 GLSIAELMIANELALRGKNEIRAKMQSVFDIMGPVMIGGSSSHTAGALRI--GRRARALF 68
Query: 296 GGEQTKMEEGEFFAIETFASTGKG 319
G + + +A +F G
Sbjct: 69 GELKNVPDWVNIYAYASFEENAAG 92
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 31.3 bits (71), Expect = 0.50
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 8/61 (13%)
Query: 11 SIEENGTLESVNGNEEHSDVSSMQKDEEEEGKEVSSKKKKKKNKSKKKKELPQQTDPPSI 70
EE ES + E Q+D E E KKK++ K K +KE P+
Sbjct: 96 DEEEETEEESTDETE--------QEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPK 147
Query: 71 P 71
P
Sbjct: 148 P 148
Score = 28.2 bits (63), Expect = 5.5
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 13 EENGTLESVNGNEEHSDVSSMQKDEEEEGKEVSSKK-KKKKNKSKKKKELPQQTDP 67
+E E + +E + K E +E K+ K K +K K K + + P+ + P
Sbjct: 96 DEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKP 151
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 31.9 bits (72), Expect = 0.65
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 25 EEHSDVSSMQKDEEEEGKEVSSKKKKKKNKSKKK 58
++ D K E+ +E S KKKKK K+KKK
Sbjct: 221 DDEDDGDESDKGGEDGDEEKSKKKKKKLAKNKKK 254
Score = 30.3 bits (68), Expect = 1.9
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 13 EENGTLESVNGNEEHSDVSSMQKDEEEEGKEVSSKKKKKKNKSKKKK 59
+ + E S+ ++ EEEG KK KK K KK
Sbjct: 308 IPAKPEIEQDEDSEESE----EEKNEEEGGLSKKGKKLKKLKGKKNG 350
>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2. It is vital for
effective cell-replication that replication is not
stalled at any point by, for instance, damaged bases.
Rtf2 stabilizes the replication fork stalled at the
site-specific replication barrier RTS1 by preventing
replication restart until completion of DNA synthesis by
a converging replication fork initiated at a flanking
origin. The RTS1 element terminates replication forks
that are moving in the cen2-distal direction while
allowing forks moving in the cen2-proximal direction to
pass through the region. Rtf2 contains a C2HC2 motif
related to the C3HC4 RING-finger motif, and would appear
to fold up, creating a RING finger-like structure but
forming only one functional Zn2+ ion-binding site.
Length = 254
Score = 31.2 bits (71), Expect = 0.79
Identities = 11/71 (15%), Positives = 24/71 (33%)
Query: 21 VNGNEEHSDVSSMQKDEEEEGKEVSSKKKKKKNKSKKKKELPQQTDPPSIPVVDLFPSGE 80
+N EE ++ + +EE K+ KKKK K + +
Sbjct: 162 LNPTEEEVELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQV 221
Query: 81 FPEGEIQQYKD 91
++++ +
Sbjct: 222 GEAKKLKKKRS 232
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 31.7 bits (72), Expect = 0.84
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 1 MADENVSKEISIEENGTLESVNGNEEHSDVSSMQKDEEEEGKEVSSKKKKKKNKSKKKKE 60
DE K +++ + +V+ + + D + + V KK KKK K KKK+
Sbjct: 232 TDDEAEKKRQEVKKKLKINNVS--LDDDSTETPASDYYDVSEMVKFKKPKKKKKKKKKRR 289
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional.
Length = 213
Score = 30.7 bits (70), Expect = 1.1
Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 34 QKDEEEEGKEVSSKKKKKKNKSKKKKELPQQ--TDPPSIPVVDL 75
+++ E ++ +++K K K+ +KK P+ +P PV D+
Sbjct: 121 KREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDI 164
>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2
complex component). RNases H are enzymes that
specifically hydrolyse RNA when annealed to a
complementary DNA and are present in all living
organisms. In yeast RNase H2 is composed of a complex of
three proteins (Rnh2Ap, Ydr279p and Ylr154p), this
family represents the homologues of Ydr279p. It is not
known whether non yeast proteins in this family fulfil
the same function.
Length = 287
Score = 30.4 bits (69), Expect = 1.6
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 9/63 (14%)
Query: 2 ADENVSKEISIEENGTLESVNGNEEHSDVSSMQKDEEEEGKEVSSKKKKKKNKSKKKKEL 61
+ KE ++ T E V E + ++ +EE KKKK +SK K L
Sbjct: 222 PLDKYLKESKKKKRETEEDVEAAE---SRAEKKRKSKEE------IKKKKPKESKGVKAL 272
Query: 62 PQQ 64
+
Sbjct: 273 KKV 275
>gnl|CDD|219547 pfam07741, BRF1, Brf1-like TBP-binding domain. This region
covers both the Brf homology II and III regions. This
region is involved in binding TATA binding protein.
Length = 95
Score = 28.8 bits (65), Expect = 1.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 34 QKDEEEEGKEVSSKKKKKKNKSKKKKELPQQT 65
K + +EG KKKK+K K K+ + P T
Sbjct: 37 LKQKADEGNNSGKKKKKRKAKKKRDEAGPAST 68
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 30.3 bits (69), Expect = 2.0
Identities = 13/64 (20%), Positives = 26/64 (40%)
Query: 30 VSSMQKDEEEEGKEVSSKKKKKKNKSKKKKELPQQTDPPSIPVVDLFPSGEFPEGEIQQY 89
+ + + E++ +E +KKKK KKK+E ++ + E E ++
Sbjct: 412 IKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEE 471
Query: 90 KDDN 93
K
Sbjct: 472 KKKK 475
>gnl|CDD|221654 pfam12589, WBS_methylT, Methyltransferase involved in
Williams-Beuren syndrome. This domain family is found
in eukaryotes, and is typically between 72 and 83 amino
acids in length. The family is found in association
with pfam08241. This family is made up of
S-adenosylmethionine-dependent methyltransferases. The
proteins are deleted in Williams-Beuren syndrome (WBS),
a complex developmental disorder with multisystemic
manifestations including supravalvular aortic stenosis
(SVAS) and a specific cognitive phenotype.
Length = 85
Score = 28.0 bits (63), Expect = 2.3
Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 5/56 (8%)
Query: 11 SIEENGTLESVNGNEEHSDVSSMQKDEEEEGKEVSSKKKKKKNKSKK-----KKEL 61
E+ G E+ + + + + KKKKK K K KKE
Sbjct: 8 VPEQLPNGLGEEGEEDDEQIDASKVRRISQRNRRKKKKKKKLKKKSKEWILRKKEQ 63
>gnl|CDD|220610 pfam10165, Ric8, Guanine nucleotide exchange factor synembryn.
Ric8 is involved in the EGL-30 neurotransmitter
signalling pathway. It is a guanine nucleotide exchange
factor that regulates neurotransmitter secretion.
Length = 439
Score = 30.0 bits (68), Expect = 2.4
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 101 EKRELERLEKPKYNSVRQAAEVHRQVRKYIKSLLKP 136
E +L+ P + + VRKY+++LL P
Sbjct: 251 EALKLDETLTPLLTLLTKIYRAAEPVRKYLRALLLP 286
>gnl|CDD|221550 pfam12366, Casc1, Cancer susceptibility candidate 1. This domain
family is found in eukaryotes, and is typically between
216 and 263 amino acids in length. Casc1 has many SNPs
associated with cancer susceptibility.
Length = 227
Score = 29.7 bits (67), Expect = 2.8
Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 10/86 (11%)
Query: 13 EENGTLESVNGNEEHSDVSSMQKDEEEEGKEV--SSKKKKKKNKSKKKKEL---PQQTDP 67
+N + S++ H EE + K+ K+K K L DP
Sbjct: 49 IQNEIIFSMD--TFHVRYELYISKIAEEAEGARGYVTDIPKEYKAKPVKYLEIPKPIKDP 106
Query: 68 PSIPVVDLFPS--GEFPEGEIQQYKD 91
P +P +FP F E E Q Y D
Sbjct: 107 PELP-EGMFPDNLNIFAEQEAQFYID 131
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 29.8 bits (67), Expect = 3.3
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 7/58 (12%)
Query: 13 EENGTLESVNGNEEHSDVSSMQKDEEE-------EGKEVSSKKKKKKNKSKKKKELPQ 63
EE S+N NE+ S+ S + D E + +E S KK K K LP
Sbjct: 218 EEGEEAPSINYNEDTSESESDESDSEISESRSVSDSEESSPPSKKPKEKKTSSTFLPS 275
Score = 29.4 bits (66), Expect = 3.6
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 3 DENVSKEISIEENG-TLESVNGNEEHSDVSSMQKDEEEEGKEVSSKKKKKKNKSKKKKEL 61
+E + SI N T ES + + S + EE S K K+KK S L
Sbjct: 217 EEEGEEAPSINYNEDTSESESDESDSEISESRSVSDSEESSPPSKKPKEKKTSSTFLPSL 276
>gnl|CDD|233042 TIGR00598, rad14, DNA repair protein. All proteins in this family
for which functions are known are used for the
recognition of DNA damage as part of nucleotide excision
repair. This family is based on the phylogenomic
analysis of JA Eisen (1999, Ph.D. Thesis, Stanford
University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 172
Score = 28.6 bits (64), Expect = 4.1
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 36 DEEEEGKEVSSKKKKKKNKSKKKKELPQQT 65
DEE+E +E S ++ K+K KK KEL +
Sbjct: 97 DEEKERREESKEEMKEKKFEKKLKELRRAV 126
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 29.5 bits (66), Expect = 4.1
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 24 NEEHSDVSSMQKDEEEEGKEVSSKKKKKKNKSKKKKELPQQTDP 67
+ ++ + E GKE +K++ K + KKKKE P++
Sbjct: 86 KGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPK 129
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 29.3 bits (66), Expect = 4.3
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 14/70 (20%)
Query: 10 ISIEENGTLESVNGNEEHSDVSSMQKDEEEEG------------KEVSSKKKKK--KNKS 55
++ E + E G E SD ++ ++E K V K+K K +NK
Sbjct: 227 MAPEASRLDEMSEGLLEESDDDGEEESDDESAWEGFESEYEPINKPVRPKRKTKAQRNKE 286
Query: 56 KKKKELPQQT 65
K++KEL ++
Sbjct: 287 KRRKELEREA 296
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 28.5 bits (64), Expect = 4.4
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 13 EENGTLESVNGNEEHSDVSSMQKDEEEEGKEVSSKKKKKKNKSKKKKE 60
E G+ + E + V + EEEE KE KK+ KK K +KK +
Sbjct: 126 SELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDK 173
Score = 28.1 bits (63), Expect = 6.5
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 13 EENGTLESVNGNEEHSDVSSMQKDEEEEGKEVSSKKKKKKNKSKKKK 59
E E ++ ++ ++++ K V K KKK K KKKK
Sbjct: 147 AEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKKK 193
Score = 28.1 bits (63), Expect = 7.6
Identities = 13/60 (21%), Positives = 25/60 (41%)
Query: 6 VSKEISIEENGTLESVNGNEEHSDVSSMQKDEEEEGKEVSSKKKKKKNKSKKKKELPQQT 65
S+ + E+ T + E + +K ++E KE KK KK+ + K ++
Sbjct: 129 GSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKK 188
Score = 27.8 bits (62), Expect = 7.9
Identities = 19/67 (28%), Positives = 32/67 (47%)
Query: 2 ADENVSKEISIEENGTLESVNGNEEHSDVSSMQKDEEEEGKEVSSKKKKKKNKSKKKKEL 61
D S+ S E E+ E+ ++V +K E+++ KEV +KK+KK+K +K E
Sbjct: 121 PDGPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEP 180
Query: 62 PQQTDPP 68
Sbjct: 181 KGSKKKK 187
>gnl|CDD|223450 COG0373, HemA, Glutamyl-tRNA reductase [Coenzyme metabolism].
Length = 414
Score = 29.1 bits (66), Expect = 4.5
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 102 KRELERLEKPKYNSVRQAAEVHRQVRKYIKSLLKP 136
+ ELE+ K N + + + R + LL
Sbjct: 351 EEELEKALKKLPNGEDEEEVLEKLARSLVNKLLHA 385
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 29.3 bits (66), Expect = 4.5
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 19 ESVNGNEEHSDVSSMQKDEEEEGKEVSSKKKKKKNKSKKKKELPQQTDPPSIPVVDLFPS 78
E + S + EE KE+ K+++ + KK KEL ++ + +L+
Sbjct: 308 ELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELE-ERHELYEE 366
Query: 79 GEFPEGEIQQYKDDNLWRTTSEEKRELERLEKPK 112
+ + E+++ K T + ++ELE LEK K
Sbjct: 367 AKAKKEELERLKKRLTGLTPEKLEKELEELEKAK 400
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 29.6 bits (66), Expect = 4.6
Identities = 14/64 (21%), Positives = 27/64 (42%)
Query: 1 MADENVSKEISIEENGTLESVNGNEEHSDVSSMQKDEEEEGKEVSSKKKKKKNKSKKKKE 60
MA ++SK E T E E + + EE G+ + + K +++ + E
Sbjct: 625 MALGDLSKGDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGE 684
Query: 61 LPQQ 64
+P +
Sbjct: 685 IPAE 688
>gnl|CDD|217604 pfam03538, VRP1, Salmonella virulence plasmid 28.1kDa A protein.
Length = 325
Score = 28.8 bits (64), Expect = 4.7
Identities = 18/100 (18%), Positives = 39/100 (39%)
Query: 12 IEENGTLESVNGNEEHSDVSSMQKDEEEEGKEVSSKKKKKKNKSKKKKELPQQTDPPSIP 71
IE NG+ ++ E +D++ + + + +E+ + SK +E QT P
Sbjct: 144 IELNGSNNAIGLAERRADLADLLLNSDAINQEIPALSLVNDVLSKSAREYLDQTGQAEKP 203
Query: 72 VVDLFPSGEFPEGEIQQYKDDNLWRTTSEEKRELERLEKP 111
V + +P Y + + ++ EL + +
Sbjct: 204 VNQVLGETRYPFTLPYHYPHQQINLGLANQETELGDIIQQ 243
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional.
Length = 701
Score = 29.3 bits (65), Expect = 5.1
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 14 ENGTLESVNGNEEHSDVSSMQKDEEEEGKEVSSKKKKKKNKSKKKKELPQQ 64
E T + V +E + + EE + +EV + KK K+KK KE+ ++
Sbjct: 208 EKTTEKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVKEVTKE 258
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 29.2 bits (66), Expect = 5.3
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 3 DENVSKEISIEENGTLESVNGNEEHSDVSSMQKDEEEEGKEVSSKKKKKKNKSKKKKELP 62
DE + EE ++ + E+ D S +D+EEE +E KKKKK + ELP
Sbjct: 334 DEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKS-AESTRSELP 392
Query: 63 QQTDPPS 69
P
Sbjct: 393 FTFPCPK 399
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 29.0 bits (65), Expect = 5.3
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 16/97 (16%)
Query: 31 SSMQKDEEEEGKEVSSKKKKKKNKSKKKKELPQQTDP-------PSIPVV---DLFPSGE 80
+S++++ ++ +SS KKK + K+KKE + T V+ +
Sbjct: 205 ASLKRNPPKKSNIMSSFFKKKTKEKKEKKEASESTVKEESEEESGKRDVILEDESAEPTG 264
Query: 81 FPEGEIQQYKDDNLWRTTSEE------KRELERLEKP 111
E E + + R+ SEE K + +RL+K
Sbjct: 265 LDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKM 301
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19.
Med19 represents a family of conserved proteins which
are members of the multi-protein co-activator Mediator
complex. Mediator is required for activation of RNA
polymerase II transcription by DNA binding
transactivators.
Length = 178
Score = 28.3 bits (63), Expect = 6.4
Identities = 18/78 (23%), Positives = 37/78 (47%)
Query: 39 EEGKEVSSKKKKKKNKSKKKKELPQQTDPPSIPVVDLFPSGEFPEGEIQQYKDDNLWRTT 98
E+ + + + KKK+K K KK Q P P G + + ++++DD +
Sbjct: 99 EQYRLMHIQPPKKKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKK 158
Query: 99 SEEKRELERLEKPKYNSV 116
+EK++ ++ P++ V
Sbjct: 159 KKEKKKKKKRHSPEHPGV 176
>gnl|CDD|187751 cd09270, RNase_H2-B, Ribonuclease H2-B is a subunit of the
eukaryotic RNase H complex which cleaves RNA-DNA
hybrids. Ribonuclease H2B is one of the three proteins
of eukaryotic RNase H2 complex that is required for
nucleic acid binding and hydrolysis. RNase H is
classified into two families, type I (prokaryotic RNase
HI, eukaryotic RNase H1 and viral RNase H) and type II
(prokaryotic RNase HII and HIII, and eukaryotic RNase
H2/HII). RNase H endonucleolytically hydrolyzes an RNA
strand when it is annealed to a complementary DNA strand
in the presence of divalent cations, in DNA replication
and repair. The enzyme can be found in bacteria,
archaea, and eukaryotes. Most prokaryotic and eukaryotic
genomes contain multiple RNase H genes. Despite a lack
of evidence for homology from sequence comparisons, type
I and type II RNase H share a common fold and similar
steric configurations of the four acidic active-site
residues, suggesting identical or very similar catalytic
mechanisms. Eukaryotic RNase HII is active during
replication and is believed to play a role in removal of
Okazaki fragment primers and single ribonucleotides in
DNA-DNA duplexes. Eukaryotic RNase HII is functional
when it forms a complex with RNase H2B and RNase H2C
proteins. It is speculated that the two accessory
subunits are required for correct folding of the
catalytic subunit of RNase HII. Mutations in the three
subunits of human RNase HII cause neurological disorder.
Length = 211
Score = 28.4 bits (64), Expect = 6.5
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 28 SDVSSMQKDEEEEGKEVSSKKKKKKNKSKKKKELP 62
+ ++++ +KKKKK KS KKK+L
Sbjct: 162 DIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLK 196
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 28.9 bits (65), Expect = 6.6
Identities = 25/129 (19%), Positives = 48/129 (37%), Gaps = 18/129 (13%)
Query: 2 ADENVSKEISIEENGTLESVNGNEEHSDVSSMQKDEEEEGKEVSSKKKKKKNKSKKKKEL 61
A + +E EEN L++ + + + +K + + ++K K K KKKK+
Sbjct: 481 AQKEEEEEELDEENPWLKTTSSVGKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKK 540
Query: 62 PQQTDPPSIPVVD-----LFPSGEFPEGEIQQYK-------------DDNLWRTTSEEKR 103
+ D + + L E E + + D++ +EK+
Sbjct: 541 EKSIDLDDDLIDEEDSIKLDVDDEEDEDDEELPFLFKQKDLIKEAFAGDDVVAEFEKEKK 600
Query: 104 ELERLEKPK 112
E+ E PK
Sbjct: 601 EVIEEEDPK 609
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 28.8 bits (65), Expect = 6.8
Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 13/82 (15%)
Query: 34 QKDEEEEGKEVSSKKKKKKNKSKKKKELPQQTDPPSIPVVDLFPSGEFPEGEIQQYKDDN 93
+K+ +E K + KK+++ K K+ ++L + PP+ + F E D+
Sbjct: 559 EKEALKEQKRLRKLKKQEEKKKKELEKLEKAKIPPA----EFFKRQEDKYSAF----DET 610
Query: 94 LWRTTSEE-----KRELERLEK 110
T + K+E ++L K
Sbjct: 611 GLPTHDADGEEISKKERKKLSK 632
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 28.8 bits (65), Expect = 7.0
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 34 QKDEEEEGKEVSSKKKKKKNKSKKKK 59
+K++E+E +V + + KN K++K
Sbjct: 402 KKEKEKEKPKVKKRHRDTKNIGKRRK 427
>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional.
Length = 742
Score = 28.6 bits (64), Expect = 7.0
Identities = 10/71 (14%), Positives = 20/71 (28%), Gaps = 8/71 (11%)
Query: 3 DENVSKEISIEENGTLESVNGNEEHSDVSSMQKDEEEEGKEVSSKKKKKKNKSKKK--KE 60
+N + G S + + + E+ K+ + K K KK +
Sbjct: 93 YDNFFDS-----KNNSKQFAGPLAISLMRKPKP-KTEKLKKKITVNKSTNKKKKKVLSSK 146
Query: 61 LPQQTDPPSIP 71
+ P
Sbjct: 147 DELIKYDNNKP 157
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 28.6 bits (64), Expect = 7.1
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 17 TLESVNGNEEHSDVSSMQKDEEEEGKEVSSKKKKKKNKSKKKK 59
T S + + Q++ E++ KE + + K+K+ K ++KK
Sbjct: 392 TDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
>gnl|CDD|184536 PRK14145, PRK14145, heat shock protein GrpE; Provisional.
Length = 196
Score = 28.0 bits (62), Expect = 8.0
Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 4 ENVSKEISIEENGTLESVNGNEEHSDVSSMQKDEEEEGK-----EVSSKKKKKKNKSKKK 58
E V KEI+ EE + +++ NE+ ++ ++ + + E+ K+K + K +
Sbjct: 2 EEVEKEINKEEEKDVNNLSSNEQMEGPPEDEQAQQNQPQQQTVDEIEELKQKLQQKEVEA 61
Query: 59 KE 60
+E
Sbjct: 62 QE 63
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 28.5 bits (64), Expect = 8.2
Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 14/78 (17%)
Query: 4 ENVSKEISIEENGTLESV------NGNEEHSDVSSMQKDEEEEGKEVSS--------KKK 49
E +S E S + N E S +K +++E KE S K
Sbjct: 37 EILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTP 96
Query: 50 KKKNKSKKKKELPQQTDP 67
KK K+KKK P+ +
Sbjct: 97 KKSKKTKKKPPKPKPNED 114
>gnl|CDD|219664 pfam07958, DUF1688, Protein of unknown function (DUF1688). A
family of uncharacterized proteins.
Length = 413
Score = 28.3 bits (64), Expect = 8.7
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 334 FDVGHIPLRLPRAKQLLATINKNFSTLAFCRRYLD 368
F+VG + R +LLA + L RR +D
Sbjct: 66 FEVGGVD----RIAELLARWASDVDPLERARRLID 96
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 27.6 bits (62), Expect = 9.1
Identities = 12/57 (21%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 6 VSKEISIEENGTLESVNGNEEHSDVSSMQKDE--EEEGKEVSSKKKKKKNKSKKKKE 60
V K + +++ E EE +V + ++E +E ++ +K K++K + ++K+
Sbjct: 90 VRKLLGLDKK---EKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQ 143
>gnl|CDD|218673 pfam05642, Sporozoite_P67, Sporozoite P67 surface antigen. This
family consists of several Theileria P67 surface
antigens. A stage specific surface antigen of Theileria
parva, p67, is the basis for the development of an
anti-sporozoite vaccine for the control of East Coast
fever (ECF) in cattle. The antigen has been shown to
contain five distinct linear peptide sequences
recognised by sporozoite-neutralising murine monoclonal
antibodies.
Length = 727
Score = 28.5 bits (63), Expect = 9.3
Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 8/92 (8%)
Query: 4 ENVSKEISIEENGTL-ESVNGNEEHSDVSSMQKDEEEEGKEVSSKKKKKKNK-----SKK 57
E VS+E +++N + G++ S+ EEE+ K SSK K K S
Sbjct: 91 EPVSQESEVQDNTEQNQDTKGSKTDSEEDD-DDSEEEDNKSTSSKDGKGSKKTQPGVSTS 149
Query: 58 KKELPQQTDPPS-IPVVDLFPSGEFPEGEIQQ 88
TD + L SG + +
Sbjct: 150 SGSTTSGTDLNTKQSQTGLGASGSHAQQDPAV 181
>gnl|CDD|236555 PRK09537, pylS, pyrolysyl-tRNA synthetase; Reviewed.
Length = 417
Score = 28.3 bits (63), Expect = 9.9
Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 42 KEVSSKKKKKKNKSKKKKELPQQTDPPSIPVVDLFPSGEFPEGEIQQYKDDNLWRTTSEE 101
K VS+ KKKK K P+ + P + SG P I + +
Sbjct: 96 KVVSAPTKKKKAMPKSVVRAPKPLENPVPAQAE--SSGSKPVPSIPVSTPEVKAPAPALT 153
Query: 102 KRELERLE 109
+ +RLE
Sbjct: 154 PSQKDRLE 161
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.133 0.388
Gapped
Lambda K H
0.267 0.0663 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,547,576
Number of extensions: 2089303
Number of successful extensions: 3200
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2780
Number of HSP's successfully gapped: 138
Length of query: 425
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 325
Effective length of database: 6,502,202
Effective search space: 2113215650
Effective search space used: 2113215650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.0 bits)