RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 014386
(425 letters)
>d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 295
Score = 210 bits (536), Expect = 6e-66
Identities = 178/266 (66%), Positives = 214/266 (80%), Gaps = 5/266 (1%)
Query: 64 QTDPPSIPVVDLFPSGEFPEGEIQQYKDD-----NLWRTTSEEKRELERLEKPKYNSVRQ 118
QTDPPS+P+ DL+P+G FP+G+ +Y WRTTSEEK+ L++ + +N R+
Sbjct: 3 QTDPPSVPICDLYPNGVFPKGQECEYPPTQDGRTAAWRTTSEEKKALDQASEEIWNDFRE 62
Query: 119 AAEVHRQVRKYIKSLLKPGMLMTDLCETLENTVRKLISENGLQAGIAFPTGCSLNWVAAH 178
AAE HRQVRKY+ S +KPGM M ++CE LE+ RKLI ENGL AG+AFPTGCSLN AAH
Sbjct: 63 AAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLNAGLAFPTGCSLNNCAAH 122
Query: 179 WTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCAFTVAFNPVFDPLLEASREATNTGIKEA 238
+TPN+GD TVLQYDD+ K+DFGTHI G I+DCAFTV FNP +D LL+A ++ATNTGIK A
Sbjct: 123 YTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTVTFNPKYDTLLKAVKDATNTGIKCA 182
Query: 239 GIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKSVPIVKGGE 298
GIDVRLCD+G AIQEVMESYEVEI+GK +QVK IRNLNGHSIG+Y+IHAGK+VPIVKGGE
Sbjct: 183 GIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSIGQYRIHAGKTVPIVKGGE 242
Query: 299 QTKMEEGEFFAIETFASTGKGYVRED 324
T+MEEGE +AIETF STGKG V
Sbjct: 243 ATRMEEGEVYAIETFGSTGKGVVDIK 268
Score = 49.9 bits (118), Expect = 2e-07
Identities = 27/32 (84%), Positives = 30/32 (93%)
Query: 394 LCDIKGSYVSQFEHTILLRPTCKEVISRGDDY 425
+ DIKGSY +QFEHTILLRPTCKEV+SRGDDY
Sbjct: 264 VVDIKGSYTAQFEHTILLRPTCKEVVSRGDDY 295
>d1b6aa1 a.4.5.25 (A:375-448) Methionine aminopeptidase, insert
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 126 bits (317), Expect = 2e-36
Identities = 59/73 (80%), Positives = 66/73 (90%)
Query: 323 EDLECSHYMKNFDVGHIPLRLPRAKQLLATINKNFSTLAFCRRYLDRLGETKYLMALKNL 382
+D+ECSHYMKNFDVGH+P+RLPR K LL IN+NF TLAFCRR+LDRLGE+KYLMALKNL
Sbjct: 2 DDMECSHYMKNFDVGHVPIRLPRTKHLLNVINENFGTLAFCRRWLDRLGESKYLMALKNL 61
Query: 383 CDTGIVQPYPPLC 395
CD GIV PYPPLC
Sbjct: 62 CDLGIVDPYPPLC 74
>d1xgsa1 a.4.5.25 (A:195-271) Methionine aminopeptidase, insert
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 77
Score = 98.6 bits (246), Expect = 4e-26
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 319 GYVREDLECSHYMKNFDVGHIPLRLPRAKQLLATINKNFSTLAFCRRYL-DRLGETKYLM 377
G V E YM +P+R+ +A+ LLA I + + TL F R+L + + E + +
Sbjct: 1 GQVIEVPPTLIYMYV---RDVPVRVAQARFLLAKIKREYGTLPFAYRWLQNDMPEGQLKL 57
Query: 378 ALKNLCDTGIVQPYPPLCDI 397
ALK L G + YP L +I
Sbjct: 58 ALKTLEKAGAIYGYPVLKEI 77
>d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia
coli [TaxId: 562]}
Length = 262
Score = 88.4 bits (218), Expect = 2e-20
Identities = 39/212 (18%), Positives = 78/212 (36%), Gaps = 13/212 (6%)
Query: 117 RQAAEVHRQVRKYIKSLLKPGMLMTDLCETLEN-TVRKLISENGLQAGIAFPTGCSLNWV 175
R A + +V + I+ +KPG+ +L + V + + + +P ++
Sbjct: 13 RVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISIN 72
Query: 176 AAHWTPNSGDKTVLQYDDVMKLDFGTHIDG---CIVDCAFTVAFNPVFDPLLEASREATN 232
D +L+ D++ +D DG + + L ++E+
Sbjct: 73 EVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQESLY 132
Query: 233 TGIKEAGIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKSVP 292
++ + L +IGAAIQ+ +E+ + +R GH IGR + +
Sbjct: 133 LALRMVKPGINLREIGAAIQKFVEAEGFSV---------VREYCGHGIGRGFHEEPQVLH 183
Query: 293 IVKGGEQTKMEEGEFFAIETFASTGKGYVRED 324
++ G F IE + GK +R
Sbjct: 184 YDSRETNVVLKPGMTFTIEPMVNAGKKEIRTM 215
>d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga
maritima [TaxId: 2336]}
Length = 249
Score = 75.8 bits (185), Expect = 3e-16
Identities = 41/211 (19%), Positives = 74/211 (35%), Gaps = 12/211 (5%)
Query: 117 RQAAEVHRQVRKYIKSLLKPGMLMTDLCETLENTVRKLISENGLQAGIAFPTGCSLNWVA 176
++A + + ++ ++ PG D+ + +KL + + + ++
Sbjct: 14 KKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPAFKGYGGYKYATCVSVNE 73
Query: 177 AHWTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCAFTVAF---NPVFDPLLEASREATNT 233
+ V + D++ +D G G D A T + L+ +RE
Sbjct: 74 EVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIVGETDERGKELVRVTREVLEK 133
Query: 234 GIKEAGIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKSVPI 293
IK +RL D+ IQE +ES + IR+ GH +GR +
Sbjct: 134 AIKMIKPGIRLGDVSHCIQETVESVGFNV---------IRDYVGHGVGRELHEDPQIPNY 184
Query: 294 VKGGEQTKMEEGEFFAIETFASTGKGYVRED 324
G + +G AIE S G V
Sbjct: 185 GTPGTGVVLRKGMTLAIEPMVSEGDWRVVVK 215
Score = 26.1 bits (56), Expect = 7.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 397 IKGSYVSQFEHTILLRPTCKEVISR 421
+ GS + FEHTIL+ E++++
Sbjct: 224 VDGSRCAHFEHTILITENGAEILTK 248
>d1xgsa2 d.127.1.1 (A:1-194,A:272-295) Methionine aminopeptidase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 218
Score = 73.2 bits (178), Expect = 1e-15
Identities = 73/203 (35%), Positives = 110/203 (54%), Gaps = 16/203 (7%)
Query: 117 RQAAEVHRQVRKYIKSLLKPGMLMTDLCETLENTVRKLISENGLQAGIAFPTGCSLNWVA 176
+A E+ ++VR+ L +PGML+ +L E++E + +L + FP S+N +A
Sbjct: 7 MKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKPA------FPVNLSINEIA 60
Query: 177 AHWTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCAFTVAFNPVFDPLLEASREATNTGIK 236
AH+TP GD TVL+ D +K+D G HIDG I D A TV D L+EA++EA N I
Sbjct: 61 AHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEEDELMEAAKEALNAAIS 120
Query: 237 EAGIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGK-SVPIVK 295
A V + ++G AI+ + + NL+GH I RY++HAG I +
Sbjct: 121 VARAGVEIKELGKAIENEIRKRGFKPI---------VNLSGHKIERYKLHAGISIPNIYR 171
Query: 296 GGEQTKMEEGEFFAIETFASTGK 318
+ ++EG+ FAIE FA+ G
Sbjct: 172 PHDNYVLKEGDVFAIEPFATIGA 194
>d1qxya_ d.127.1.1 (A:) Methionine aminopeptidase {Staphylococcus
aureus [TaxId: 1280]}
Length = 249
Score = 58.3 bits (139), Expect = 3e-10
Identities = 30/208 (14%), Positives = 71/208 (34%), Gaps = 5/208 (2%)
Query: 117 RQAAEVHRQVRKYIKSLLKPGMLMTDLCETLENTVRKLISENGLQAGIAFPTGCSLNWVA 176
++ + +VR +++ KPG+ +L + + + + FP ++
Sbjct: 13 KEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENFPGQTCISVNE 72
Query: 177 AHWTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCAFTVAFNPVFDPLLEASREATNTGIK 236
+ V++ D++ +D +G D + DP+ + + +
Sbjct: 73 EVAHGIPSKR-VIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKVCDVATMAFE 131
Query: 237 EAGIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKSVPIVKG 296
A V+ + I + + + + + KV + +
Sbjct: 132 NAIAKVKPGTKLSNIGKAVHNTARQNDLKVIK----NLTGHGVGLSLHEAPAHVLNYFDP 187
Query: 297 GEQTKMEEGEFFAIETFASTGKGYVRED 324
++T + EG AIE F S+ +V E
Sbjct: 188 KDKTLLTEGMVLAIEPFISSNASFVTEG 215
Score = 26.3 bits (56), Expect = 6.8
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 399 GSYVSQFEHTILLRPTCKEVISR 421
S+V+Q EHT+++ + ++
Sbjct: 226 KSFVAQIEHTVIVTKDGPILTTK 248
>d2v3za2 d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 264
Score = 50.4 bits (119), Expect = 1e-07
Identities = 28/205 (13%), Positives = 60/205 (29%), Gaps = 16/205 (7%)
Query: 117 RQAAEVHRQVRKYIKSLLKPGMLMTDLCETLENTVRKLISENGLQAGIAFPTGCSLNWVA 176
R+A E+ +PGM L + + + +G + S
Sbjct: 9 RRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNR----HGARYPSYNTIVGSGENGC 64
Query: 177 AHWTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCAFTVAFNPVFDP----LLEASREATN 232
+ + + D++ +D G G D T N F + + E+
Sbjct: 65 ILHYTENECEM--RDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLE 122
Query: 233 TGIKEAGIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSI------RNLNGHSIGRYQIH 286
T ++ + ++ + +M S V++ V + R H + +
Sbjct: 123 TSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGL 182
Query: 287 AGKSVPIVKGGEQTKMEEGEFFAIE 311
V + +E G +
Sbjct: 183 DVHDVGVYGQDRSRILEPGMVLTVA 207
>d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 221
Score = 48.1 bits (113), Expect = 5e-07
Identities = 25/198 (12%), Positives = 63/198 (31%), Gaps = 21/198 (10%)
Query: 117 RQAAEVHRQVRKYIKSLLKPGMLMTDLCETLENTVRKLISENGLQAGIAFPTGCSLNWVA 176
+A E+ + + G ++ +E ++ +E +
Sbjct: 10 EKACEIADKAVMAAIEEITEGKREREVAAKVEYLMKMNGAEKP------AFDTIIASGHR 63
Query: 177 AHWTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCAFTVAFNPVFDP---LLEASREATNT 233
+ ++ D++ +D G + D T+ + + E EA
Sbjct: 64 SALPHGVASDKRIERGDLVVIDLGALYNHYNSDITRTIVVGSPNEKQREIYEIVLEAQKR 123
Query: 234 GIKEAGIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKSVPI 293
++ A + ++ + +E+++ Y + HS+G P
Sbjct: 124 AVEAAKPGMTAKELDSIAREIIKEYG------------YGDYFIHSLGHGVGLEIHEWPR 171
Query: 294 VKGGEQTKMEEGEFFAIE 311
+ ++T ++EG IE
Sbjct: 172 ISQYDETVLKEGMVITIE 189
>d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal)
domain {Pseudomonas putida [TaxId: 303]}
Length = 246
Score = 39.7 bits (91), Expect = 3e-04
Identities = 31/218 (14%), Positives = 58/218 (26%), Gaps = 18/218 (8%)
Query: 117 RQAAEVHRQVRKYIKSLLKPGMLMTDLCETLENTVRKLIS---ENGLQAGIAFPTGCSLN 173
R A + + L + ++ + + I+ E+ +N
Sbjct: 12 RHGARIADIGGAAVVEALGDQVPEYEVALHATQAMVRAIADTFEDVELMDTWTWFQSGIN 71
Query: 174 WVAAHWTPNSGDKTVLQYDDVMKLDFGTHIDGCIVDCAFTVAFNPVFDPLLEASREATNT 233
AH + V K D + ++ +T +F
Sbjct: 72 TDGAHNPVTT--------RKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRLWQ 123
Query: 234 GIKEAGIDVRLCDIGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGRYQIHAGKSVPI 293
E A + EI K ++ GHS G + G+ +
Sbjct: 124 VNVEVHEAGLKLIKPGARCSDIARELNEIFLKHDVLQYRTFGYGHSFGTLSHYYGREAGL 183
Query: 294 -VKGGEQTKMEEGEFFAIE-----TFASTGKGYVR-ED 324
++ T +E G ++E G G R D
Sbjct: 184 ELREDIDTVLEPGMVVSMEPMIMLPEGLPGAGGYREHD 221
>d2dsrg1 g.28.1.1 (G:151-229) Insulin-like growth factor-binding
protein 4, IGFBP4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 27.3 bits (60), Expect = 0.97
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 363 CRRYLDRLGETKYLMALKNLCDTGIVQPYPPLCDIKGSY 401
C+ L R E L A ++ + P CD G++
Sbjct: 3 CQSELHRALER--LAASQSRTHEDLYIIPIPNCDRNGNF 39
>d2dsqg1 g.28.1.1 (G:149-231) Insulin-like growth factor-binding
protein 1, IGFBP1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 27.3 bits (60), Expect = 1.1
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 363 CRRYLDRLGETKYLMALKNLCDTGIVQPYPPLCDIKGSYVSQFEHTILLRPT 414
CR L R+ E+ L + I + Y P C+ G Y S+ T +
Sbjct: 3 CRIELYRVVES--LAKAQETSGEEISKFYLPNCNKNGFYHSRQCETSMDGEA 52
>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA,
domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}
Length = 163
Score = 26.2 bits (57), Expect = 5.5
Identities = 12/98 (12%), Positives = 29/98 (29%), Gaps = 1/98 (1%)
Query: 136 PGMLMTDLCETLENTVRKLISENGLQAGIAFPTGCSLNWVAAHWTPNSGDKTVLQYDDVM 195
PG+L D + + L + + P ++ G+ ++
Sbjct: 15 PGVLTADELDKRGLKLATLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTAKLLL 74
Query: 196 KLDFGTHIDGCIVDCAFT-VAFNPVFDPLLEASREATN 232
+ + V F + + ++ A +E N
Sbjct: 75 QDPNVDMLIAICVVPTFAGMTLTEHAEGIIRAVKEVNN 112
>d1txka1 b.1.18.2 (A:397-511) Glucans biosynthesis protein G
(MdoG, OpgG), C-terminal domain {Escherichia coli
[TaxId: 562]}
Length = 115
Score = 25.6 bits (56), Expect = 5.6
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 59 KELPQQTDPPSIPVVDLFPSGEFPEGEIQQYKDDNLWRTT 98
K+LP+ D P + +GE E ++ WR
Sbjct: 41 KKLPE--DTPVTAQTSIGDNGEIVESTVRYNPVTKGWRLV 78
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.133 0.388
Gapped
Lambda K H
0.267 0.0411 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,586,069
Number of extensions: 75962
Number of successful extensions: 222
Number of sequences better than 10.0: 1
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 23
Length of query: 425
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 337
Effective length of database: 1,199,356
Effective search space: 404182972
Effective search space used: 404182972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)