BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014387
(425 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0JIL1|NRX2_ORYSJ Probable nucleoredoxin 2 OS=Oryza sativa subsp. japonica
GN=Os01g0794400 PE=2 SV=1
Length = 394
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 12/117 (10%)
Query: 90 ARQHQTR-HESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPSLIDRAVIQF 148
A HQ + H + +EV+++ D + F+ AMPW V D +
Sbjct: 65 AAYHQLKEHGAGFEVIFVS--------CDENRPSFERFHRAMPWPAV---PFGDIGCKKR 113
Query: 149 IKEEWQFGKKPILVVLDPHGKVVCPNALHMMWIWGSLAYPFSTAREEALWREETWRL 205
+ E +Q P LVVL P+G+VV P+A+ ++ +G A+PF++AR L +E +
Sbjct: 114 LSERFQVEGIPRLVVLAPNGEVVQPDAVELVHRYGDRAFPFTSARVAELEADEQRKF 170
>sp|Q7XPE8|NRX3_ORYSJ Probable nucleoredoxin 3 OS=Oryza sativa subsp. japonica
GN=Os04g0608600 PE=2 SV=2
Length = 471
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 117 DNKQKQFQSLQSAMPWYTVYHPSLIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVCPNAL 176
D +++FQ+ SAMPW+ + + +Q + + P L++L P GKV +
Sbjct: 249 DRNEEEFQASLSAMPWFAIPYSD----TTVQELSRIFTIKGIPTLLILGPDGKVFKTDGR 304
Query: 177 HMMWIWGSLAYPFSTAR----EEALWRE 200
++ +G++A+PF+ +R EE L +E
Sbjct: 305 RIISKYGAMAFPFTESRAYELEEVLKKE 332
>sp|Q7Y0F2|NRX12_ORYSJ Probable nucleoredoxin 1-2 OS=Oryza sativa subsp. japonica
GN=Os03g0405900 PE=2 SV=1
Length = 581
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 12/114 (10%)
Query: 89 EARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPSLIDRAVIQF 148
EA +EVV++ D+ Q F + + MPW V D +
Sbjct: 65 EAYNELVSQGKSFEVVFVS--------GDSDQDAFNAYFAKMPWLAV---PFSDSEALAK 113
Query: 149 IKEEWQFGKKPILVVLDPH-GKVVCPNALHMMWIWGSLAYPFSTAREEALWREE 201
+ E ++ P LV+LD G++ + + ++ +G+ AYPF+T R L +E
Sbjct: 114 LNERYKVMGIPHLVILDAKSGEIYTEDGVELVHEYGTEAYPFTTERINELKEQE 167
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 16/159 (10%)
Query: 32 RILRALIYPKDDLLPLVDGATKTRVNLEVLRRKMVLLLISDLDISQEEVIILEQLYSEAR 91
+ L +L+ D L V G +V + L K VLL S L +L +E
Sbjct: 337 QTLESLLVTGD--LDFVLGKDGAKVPVSELVGKTVLLYFS-AKWCPPCRAFLPKLVNEYN 393
Query: 92 QHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPSLIDRAVIQFIKE 151
+ + +H + +E+V++ +D +Q + S MPW + P +R Q + +
Sbjct: 394 KIKEKH-NDFEIVFIS--------SDREQSSYDEFFSGMPWLAL--PLGDERK--QQLSK 440
Query: 152 EWQFGKKPILVVLDPHGKVVCPNALHMMWIWGSLAYPFS 190
++ P LV + P GK V +A + G+ A+PF+
Sbjct: 441 IFKITGIPSLVAIGPDGKTVTKDAKTPLVAHGADAFPFT 479
>sp|O80763|NRX1_ARATH Probable nucleoredoxin 1 OS=Arabidopsis thaliana GN=At1g60420 PE=1
SV=1
Length = 578
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 10/107 (9%)
Query: 117 DNKQKQFQSLQSAMPWYTVYHPSLIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVCPNAL 176
D ++ F MPW V D + E ++ P LV++D HGK+V N +
Sbjct: 86 DEDEESFGDYFRKMPWLAV---PFTDSETRDRLDELFKVRGIPNLVMVDDHGKLVNENGV 142
Query: 177 HMMWIWGSLAYPFSTAR-------EEALWREETWRLELLVDGLDPVI 216
++ +G+ AYPF+ + E+ R +T R L+ D VI
Sbjct: 143 GVIRSYGADAYPFTPEKMKEIKEDEDRARRGQTLRSVLVTPSRDFVI 189
Score = 38.9 bits (89), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 13/103 (12%)
Query: 91 RQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPSLIDRAVIQFIK 150
+Q + R+E+ +E++++ +D Q+ F S MPW + P R +
Sbjct: 390 KQIKERNEA-FELIFIS--------SDRDQESFDEYYSQMPWLAL--PFGDPRKAS--LA 436
Query: 151 EEWQFGKKPILVVLDPHGKVVCPNALHMMWIWGSLAYPFSTAR 193
+ ++ G P+L L P G+ V A ++ G+ AYPF+ R
Sbjct: 437 KTFKVGGIPMLAALGPTGQTVTKEARDLVVAHGADAYPFTEER 479
Score = 36.2 bits (82), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 79/189 (41%), Gaps = 28/189 (14%)
Query: 32 RILRA-LIYPKDDLLPLVDGATKTRVNLEVLRRKMVLLLISDLDISQ--EEVIILEQLYS 88
+ LR+ L+ P D + DG +V + L K + LL S + E L + Y+
Sbjct: 174 QTLRSVLVTPSRDFVISPDG---NKVPVSELEGKTIGLLFSVASYRKCTELTPKLVEFYT 230
Query: 89 EARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPSLIDRAVIQF 148
+ ++++ +E+V + + D ++ F PW + D++ +
Sbjct: 231 KLKENK----EDFEIVLISLED--------DEESFNQDFKTKPWLAL---PFNDKSGSKL 275
Query: 149 IKEEWQFGKKPILVVLDPHGKVVCPNALHMMWIWGSLAYPFSTAREEALWREETWRLE-- 206
+ + P LV+L P GK N + +G LAYPF+ + + L E ++E
Sbjct: 276 ARH-FMLSTLPTLVILGPDGKTRHSNVAEAIDDYGVLAYPFTPEKFQELKELEKAKVEAQ 334
Query: 207 ----LLVDG 211
LLV G
Sbjct: 335 TLESLLVSG 343
>sp|Q8VZQ0|NRX3_ARATH Probable nucleoredoxin 3 OS=Arabidopsis thaliana GN=At4g31240 PE=2
SV=1
Length = 392
Score = 40.4 bits (93), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 12/109 (11%)
Query: 85 QLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPSLIDRA 144
QL + T + +EV+ + TD ++F + MPW + + +
Sbjct: 224 QLVDVYNELATTDKGSFEVILIS--------TDRDSREFNINMTNMPWLAIPYEDRTRQD 275
Query: 145 VIQFIKEEWQFGKKPILVVLDPHGKVVCPNALHMMWIWGSLAYPFSTAR 193
+ + + P LV++ P K V NA M+ ++GS ++PF+ +R
Sbjct: 276 LCRI----FNVKLIPALVIIGPEEKTVTTNAREMVSLYGSRSFPFTESR 320
>sp|Q7Y0E8|NRX11_ORYSJ Probable nucleoredoxin 1-1 OS=Oryza sativa subsp. japonica
GN=Os03g0405500 PE=2 SV=1
Length = 569
Score = 37.4 bits (85), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 12/114 (10%)
Query: 89 EARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPSLIDRAVIQF 148
EA +EVV++ D Q+ F + + MPW V D
Sbjct: 58 EAYNELVSQGKNFEVVFVS--------GDKDQEAFDAYFAKMPWLAV---PFSDSECRAK 106
Query: 149 IKEEWQFGKKPILVVLDP-HGKVVCPNALHMMWIWGSLAYPFSTAREEALWREE 201
+ + ++ P LV+L+ G+V + + ++ + G+ AYPF+T R L +E
Sbjct: 107 LNKRFKVRGIPHLVILNATSGEVYTEDGVELVTVHGTEAYPFTTERINELKEQE 160
>sp|B1LSF9|BCHL_METRJ Light-independent protochlorophyllide reductase iron-sulfur
ATP-binding protein OS=Methylobacterium radiotolerans
(strain ATCC 27329 / DSM 1819 / JCM 2831) GN=bchL PE=3
SV=1
Length = 297
Score = 35.8 bits (81), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Query: 233 DMDWI---RKFTTATNAVAKTAGIPLGMVYVGKSNPKDRVRRNNDTIASENLSHIWQDLT 289
D D I + A +A +K G+ LG V +S D + R ND + + L+H + DL
Sbjct: 180 DFDSIFAMNRIVAAIHAKSKNYGVRLGGVIANRSAKTDEIDRFNDAVGLKRLAH-FPDLD 238
Query: 290 SIWYFWVRLESMWYSKVQLGRNAETDHVMQEIMRM 324
+ ++ +++ ++ + E D V E MR+
Sbjct: 239 VVRRSRLKKSTLF----EMESSPELDAVTAEYMRL 269
>sp|Q3AA24|MNMA_CARHZ tRNA-specific 2-thiouridylase MnmA OS=Carboxydothermus
hydrogenoformans (strain Z-2901 / DSM 6008) GN=mnmA PE=3
SV=1
Length = 365
Score = 32.7 bits (73), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Query: 58 LEVLRRKMVLLLISD-LDISQEEVIILEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWT 116
++V+ RK VL+ +S +D S ++LEQ Y + + EV+ V +
Sbjct: 1 MDVIGRKKVLVAMSGGVDSSVTAALLLEQGYEVVGVTMQIWDPKIEVIGEEYVGCCSIYA 60
Query: 117 DNKQKQFQSLQSAMPWYTVYHPSLIDRAVIQFIKEEWQFGKKP 159
N ++ + +P+Y + L +R VI + EE+ G+ P
Sbjct: 61 VNDARRVAD-RLGIPYYVLNFRELFERKVIDYFTEEYLRGRTP 102
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161,167,282
Number of Sequences: 539616
Number of extensions: 6673851
Number of successful extensions: 13953
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 13942
Number of HSP's gapped (non-prelim): 16
length of query: 425
length of database: 191,569,459
effective HSP length: 120
effective length of query: 305
effective length of database: 126,815,539
effective search space: 38678739395
effective search space used: 38678739395
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)