Query 014387
Match_columns 425
No_of_seqs 255 out of 1078
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 04:38:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014387.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014387hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14577 SEO_C: Sieve element 100.0 2.2E-94 4.9E-99 684.8 19.1 234 191-425 1-235 (235)
2 KOG2501 Thioredoxin, nucleored 99.9 5.3E-27 1.2E-31 211.7 10.4 132 47-201 16-152 (157)
3 cd03009 TryX_like_TryX_NRX Try 99.9 8.8E-26 1.9E-30 196.5 13.6 126 49-189 4-131 (131)
4 cd03008 TryX_like_RdCVF Trypar 99.9 2.7E-26 5.8E-31 206.7 10.4 136 36-187 2-142 (146)
5 cd02964 TryX_like_family Trypa 99.9 5.8E-24 1.3E-28 186.2 13.4 127 46-189 2-132 (132)
6 PF13905 Thioredoxin_8: Thiore 99.8 4.8E-19 1E-23 145.5 12.0 91 63-170 1-95 (95)
7 cd03012 TlpA_like_DipZ_like Tl 99.7 7.5E-17 1.6E-21 139.9 8.8 108 53-174 13-122 (126)
8 PF08534 Redoxin: Redoxin; In 99.7 4.8E-16 1E-20 137.3 10.0 114 42-175 3-132 (146)
9 cd02967 mauD Methylamine utili 99.6 1.1E-15 2.3E-20 129.2 10.4 103 50-174 7-112 (114)
10 cd00340 GSH_Peroxidase Glutath 99.6 2.4E-15 5.1E-20 135.0 5.9 115 49-175 8-140 (152)
11 PF00578 AhpC-TSA: AhpC/TSA fa 99.6 1.6E-14 3.5E-19 123.2 10.7 111 42-172 2-123 (124)
12 PRK15412 thiol:disulfide inter 99.6 8.1E-15 1.8E-19 136.1 9.5 111 43-175 43-160 (185)
13 PLN02412 probable glutathione 99.6 8.1E-15 1.8E-19 134.2 8.1 117 48-175 14-148 (167)
14 cd03010 TlpA_like_DsbE TlpA-li 99.5 3.3E-14 7.2E-19 122.8 10.9 97 54-173 16-116 (127)
15 PTZ00056 glutathione peroxidas 99.5 2.1E-14 4.5E-19 135.5 9.9 121 44-174 18-161 (199)
16 PTZ00256 glutathione peroxidas 99.5 9.5E-14 2.1E-18 128.9 13.8 125 40-175 15-165 (183)
17 PRK14018 trifunctional thiored 99.5 4.3E-14 9.2E-19 150.2 12.9 116 44-174 37-156 (521)
18 PRK03147 thiol-disulfide oxido 99.5 8.8E-14 1.9E-18 125.8 11.6 107 48-173 46-154 (173)
19 TIGR02540 gpx7 putative glutat 99.5 1.1E-13 2.5E-18 124.1 11.9 114 49-175 8-137 (153)
20 cd02969 PRX_like1 Peroxiredoxi 99.5 1.3E-13 2.8E-18 125.6 12.1 115 49-175 10-127 (171)
21 cd02966 TlpA_like_family TlpA- 99.5 1.2E-13 2.5E-18 113.5 10.6 107 49-173 5-113 (116)
22 PLN02399 phospholipid hydroper 99.5 5.3E-14 1.1E-18 136.2 9.8 122 43-175 77-218 (236)
23 cd03015 PRX_Typ2cys Peroxiredo 99.5 1.3E-13 2.8E-18 126.3 10.5 108 53-174 19-136 (173)
24 cd02968 SCO SCO (an acronym fo 99.5 1.9E-13 4.2E-18 119.5 10.4 114 48-173 7-139 (142)
25 TIGR03137 AhpC peroxiredoxin. 99.5 1.4E-13 3.1E-18 128.2 10.0 117 42-174 5-135 (187)
26 PLN02919 haloacid dehalogenase 99.5 1.9E-13 4.2E-18 156.4 12.8 118 42-173 394-518 (1057)
27 KOG2501 Thioredoxin, nucleored 99.5 6.7E-14 1.5E-18 126.9 7.0 59 217-275 27-89 (157)
28 TIGR02661 MauD methylamine deh 99.5 4.4E-13 9.6E-18 125.1 11.6 108 42-173 49-162 (189)
29 cd03017 PRX_BCP Peroxiredoxin 99.4 4.7E-13 1E-17 116.8 10.5 106 49-174 9-126 (140)
30 TIGR00385 dsbE periplasmic pro 99.4 2.4E-13 5.3E-18 124.7 8.7 108 44-173 39-153 (173)
31 PRK00522 tpx lipid hydroperoxi 99.4 3.9E-13 8.5E-18 123.0 9.9 115 41-175 20-148 (167)
32 PRK13728 conjugal transfer pro 99.4 3E-13 6.6E-18 126.0 8.9 100 44-179 54-158 (181)
33 cd03014 PRX_Atyp2cys Peroxired 99.4 6.1E-13 1.3E-17 117.2 9.4 114 42-175 3-127 (143)
34 PRK10382 alkyl hydroperoxide r 99.4 8.9E-13 1.9E-17 123.5 10.7 107 52-174 20-135 (187)
35 PRK09437 bcp thioredoxin-depen 99.4 1.1E-12 2.3E-17 117.4 10.0 112 42-173 7-135 (154)
36 cd03018 PRX_AhpE_like Peroxire 99.4 1.4E-12 3E-17 115.2 10.5 116 42-175 4-131 (149)
37 cd02971 PRX_family Peroxiredox 99.4 1.6E-12 3.5E-17 113.3 10.4 109 48-175 7-127 (140)
38 cd02970 PRX_like2 Peroxiredoxi 99.4 2.2E-12 4.8E-17 113.1 10.6 105 49-173 8-145 (149)
39 cd03011 TlpA_like_ScsD_MtbDsbE 99.4 2.2E-12 4.7E-17 110.4 9.2 99 49-171 6-106 (123)
40 PRK13190 putative peroxiredoxi 99.4 2.9E-12 6.3E-17 121.0 10.3 116 42-173 5-132 (202)
41 TIGR01626 ytfJ_HI0045 conserve 99.3 2.1E-12 4.6E-17 120.8 8.1 103 52-175 48-164 (184)
42 PRK13599 putative peroxiredoxi 99.3 6E-12 1.3E-16 120.3 10.4 118 42-173 5-134 (215)
43 PRK15000 peroxidase; Provision 99.3 1.4E-11 3.1E-16 116.3 11.0 104 56-173 26-140 (200)
44 PTZ00253 tryparedoxin peroxida 99.3 1.7E-11 3.7E-16 115.2 11.3 117 42-172 9-141 (199)
45 PTZ00137 2-Cys peroxiredoxin; 99.3 1.6E-11 3.5E-16 120.6 11.1 120 41-174 70-204 (261)
46 TIGR02738 TrbB type-F conjugat 99.3 1.2E-11 2.6E-16 112.5 9.5 86 53-173 44-134 (153)
47 cd03016 PRX_1cys Peroxiredoxin 99.3 2.9E-11 6.3E-16 114.2 10.8 115 43-173 3-132 (203)
48 PRK13191 putative peroxiredoxi 99.3 2.4E-11 5.3E-16 116.1 10.3 117 42-173 10-139 (215)
49 PRK13189 peroxiredoxin; Provis 99.2 4.9E-11 1.1E-15 114.5 10.6 116 42-173 12-141 (222)
50 PRK10606 btuE putative glutath 99.2 5.3E-11 1.2E-15 111.2 10.1 54 49-108 11-65 (183)
51 cd02950 TxlA TRX-like protein 99.1 2E-10 4.4E-15 102.7 9.2 74 61-174 18-93 (142)
52 TIGR02740 TraF-like TraF-like 99.1 1.6E-10 3.4E-15 114.2 5.4 93 53-178 156-250 (271)
53 cd02985 TRX_CDSP32 TRX family, 99.0 7.8E-10 1.7E-14 93.2 8.2 72 60-172 12-85 (103)
54 COG1225 Bcp Peroxiredoxin [Pos 99.0 5.6E-09 1.2E-13 95.3 11.0 112 41-172 6-134 (157)
55 cd02951 SoxW SoxW family; SoxW 98.9 3E-09 6.5E-14 92.0 7.1 83 62-173 12-101 (125)
56 cd02999 PDI_a_ERp44_like PDIa 98.9 3.8E-09 8.2E-14 88.9 7.4 67 59-167 14-82 (100)
57 cd02953 DsbDgamma DsbD gamma f 98.9 1.1E-08 2.4E-13 85.4 9.3 73 62-172 10-88 (104)
58 cd02956 ybbN ybbN protein fami 98.9 1.2E-08 2.5E-13 83.8 8.5 68 62-172 11-80 (96)
59 cd02948 TRX_NDPK TRX domain, T 98.8 2.5E-08 5.4E-13 83.7 8.9 68 62-172 16-85 (102)
60 PF13098 Thioredoxin_2: Thiore 98.8 4.4E-08 9.5E-13 82.4 9.1 92 62-172 4-97 (112)
61 cd02963 TRX_DnaJ TRX domain, D 98.7 6E-08 1.3E-12 82.8 8.6 72 60-173 21-94 (111)
62 PHA02278 thioredoxin-like prot 98.7 5.3E-08 1.1E-12 82.9 7.6 73 62-173 13-87 (103)
63 cd02959 ERp19 Endoplasmic reti 98.7 4E-08 8.6E-13 85.2 6.8 73 60-173 16-92 (117)
64 PF02630 SCO1-SenC: SCO1/SenC; 98.7 4.4E-07 9.6E-12 83.9 13.3 115 47-172 36-169 (174)
65 cd02954 DIM1 Dim1 family; Dim1 98.6 9.4E-08 2E-12 83.1 7.8 69 62-173 13-83 (114)
66 cd02955 SSP411 TRX domain, SSP 98.6 1.9E-07 4.1E-12 82.2 9.4 79 62-174 14-97 (124)
67 cd02952 TRP14_like Human TRX-r 98.6 9.2E-08 2E-12 83.7 7.3 80 62-176 20-109 (119)
68 cd03000 PDI_a_TMX3 PDIa family 98.6 2E-07 4.3E-12 78.1 8.5 65 62-165 14-80 (104)
69 PRK09381 trxA thioredoxin; Pro 98.6 1.8E-07 3.8E-12 78.7 8.1 67 63-172 21-89 (109)
70 PRK10996 thioredoxin 2; Provis 98.6 1.7E-07 3.7E-12 83.5 8.3 69 62-173 51-121 (139)
71 cd03003 PDI_a_ERdj5_N PDIa fam 98.6 1.3E-07 2.8E-12 78.6 6.9 68 61-171 16-85 (101)
72 PTZ00051 thioredoxin; Provisio 98.5 1.7E-07 3.7E-12 77.0 6.6 68 62-173 17-86 (98)
73 cd03002 PDI_a_MPD1_like PDI fa 98.5 2.7E-07 5.9E-12 77.1 7.8 68 62-169 17-86 (109)
74 cd03005 PDI_a_ERp46 PDIa famil 98.5 2.6E-07 5.7E-12 76.0 7.4 67 65-171 18-86 (102)
75 cd02993 PDI_a_APS_reductase PD 98.5 4.1E-07 8.9E-12 77.1 8.5 69 62-169 20-90 (109)
76 TIGR01126 pdi_dom protein disu 98.5 5.4E-07 1.2E-11 73.7 8.7 70 62-171 12-83 (102)
77 cd02949 TRX_NTR TRX domain, no 98.5 5.3E-07 1.1E-11 74.7 8.1 68 62-172 12-81 (97)
78 cd02994 PDI_a_TMX PDIa family, 98.5 6.5E-07 1.4E-11 74.1 8.2 67 61-170 15-83 (101)
79 cd02996 PDI_a_ERp44 PDIa famil 98.5 5.6E-07 1.2E-11 75.8 7.8 72 63-171 18-91 (108)
80 cd03004 PDI_a_ERdj5_C PDIa fam 98.5 7.4E-07 1.6E-11 74.2 8.4 67 62-170 18-86 (104)
81 cd02984 TRX_PICOT TRX domain, 98.5 6.5E-07 1.4E-11 73.2 7.8 68 63-173 14-83 (97)
82 cd03013 PRX5_like Peroxiredoxi 98.4 1.2E-06 2.6E-11 79.5 9.6 103 52-173 17-136 (155)
83 cd02997 PDI_a_PDIR PDIa family 98.4 1.1E-06 2.5E-11 72.3 8.1 71 62-171 16-88 (104)
84 cd02962 TMX2 TMX2 family; comp 98.4 1.7E-06 3.6E-11 78.8 9.2 79 62-176 46-126 (152)
85 TIGR01068 thioredoxin thioredo 98.3 2E-06 4.3E-11 69.9 8.1 66 63-171 14-81 (101)
86 cd02998 PDI_a_ERp38 PDIa famil 98.3 2.1E-06 4.6E-11 70.5 7.7 68 63-169 18-87 (105)
87 cd02992 PDI_a_QSOX PDIa family 98.3 4.3E-06 9.3E-11 71.9 9.8 75 63-175 19-95 (114)
88 TIGR02187 GlrX_arch Glutaredox 98.3 1.3E-05 2.7E-10 76.3 13.9 150 63-271 20-181 (215)
89 KOG0910 Thioredoxin-like prote 98.3 1E-06 2.2E-11 79.8 5.9 66 63-171 61-128 (150)
90 cd03006 PDI_a_EFP1_N PDIa fami 98.3 2.7E-06 5.9E-11 73.6 8.1 67 62-170 28-96 (113)
91 TIGR01295 PedC_BrcD bacterioci 98.3 3.3E-06 7.1E-11 73.9 8.6 38 62-108 22-61 (122)
92 cd02961 PDI_a_family Protein D 98.3 4.7E-06 1E-10 66.9 8.8 67 62-168 14-82 (101)
93 COG3118 Thioredoxin domain-con 98.3 1.3E-06 2.9E-11 86.8 6.5 70 60-172 40-111 (304)
94 cd03001 PDI_a_P5 PDIa family, 98.3 5.1E-06 1.1E-10 68.4 8.9 63 63-167 18-82 (103)
95 PTZ00062 glutaredoxin; Provisi 98.2 4.2E-06 9.1E-11 79.8 8.8 135 64-275 18-162 (204)
96 KOG0907 Thioredoxin [Posttrans 98.2 2.2E-06 4.8E-11 73.5 6.1 64 63-170 21-86 (106)
97 cd03065 PDI_b_Calsequestrin_N 98.2 3.5E-06 7.5E-11 73.9 7.2 68 64-172 28-101 (120)
98 cd02957 Phd_like Phosducin (Ph 98.2 4.8E-06 1E-10 71.1 7.7 66 63-173 24-91 (113)
99 cd02986 DLP Dim1 family, Dim1- 98.2 3.3E-06 7.3E-11 73.4 6.4 73 62-184 13-87 (114)
100 PTZ00443 Thioredoxin domain-co 98.2 5.3E-06 1.1E-10 80.1 8.0 67 63-172 52-120 (224)
101 cd03008 TryX_like_RdCVF Trypar 98.1 2E-05 4.3E-10 71.4 10.0 58 220-277 22-88 (146)
102 PRK00293 dipZ thiol:disulfide 98.1 8.2E-06 1.8E-10 88.6 8.9 73 61-172 472-549 (571)
103 PF00085 Thioredoxin: Thioredo 98.1 1.4E-05 3.1E-10 65.2 7.8 66 63-171 17-84 (103)
104 COG0450 AhpC Peroxiredoxin [Po 98.0 2.9E-05 6.2E-10 73.1 9.8 105 54-172 24-138 (194)
105 cd02995 PDI_a_PDI_a'_C PDIa fa 98.0 2.6E-05 5.5E-10 64.1 8.4 40 63-107 18-59 (104)
106 PLN00410 U5 snRNP protein, DIM 98.0 1.5E-05 3.2E-10 72.0 7.4 67 62-170 22-90 (142)
107 cd02965 HyaE HyaE family; HyaE 98.0 1.2E-05 2.6E-10 69.7 6.5 69 62-173 26-98 (111)
108 cd02989 Phd_like_TxnDC9 Phosdu 98.0 9.9E-06 2.2E-10 69.7 6.0 67 62-172 21-89 (113)
109 COG1999 Uncharacterized protei 98.0 8.1E-05 1.8E-09 71.0 12.5 114 47-172 51-185 (207)
110 cd02975 PfPDO_like_N Pyrococcu 98.0 1.6E-05 3.5E-10 68.3 6.9 62 63-167 22-85 (113)
111 cd02987 Phd_like_Phd Phosducin 98.0 1.6E-05 3.5E-10 73.8 7.1 88 63-199 83-172 (175)
112 PF13905 Thioredoxin_8: Thiore 98.0 2.1E-05 4.7E-10 64.1 6.8 54 223-276 1-57 (95)
113 PTZ00102 disulphide isomerase; 97.9 4.1E-05 8.9E-10 80.2 9.9 69 62-170 374-444 (477)
114 cd02947 TRX_family TRX family; 97.9 6.1E-05 1.3E-09 59.0 7.7 63 64-170 11-75 (93)
115 COG0386 BtuE Glutathione perox 97.9 0.0001 2.3E-09 67.0 9.6 117 49-176 11-145 (162)
116 cd02960 AGR Anterior Gradient 97.8 8.5E-05 1.8E-09 66.1 7.9 91 62-199 22-117 (130)
117 TIGR00424 APS_reduc 5'-adenyly 97.8 7E-05 1.5E-09 79.4 8.3 67 62-167 370-438 (463)
118 cd02958 UAS UAS family; UAS is 97.7 0.00013 2.7E-09 62.3 8.1 73 61-173 15-93 (114)
119 TIGR00411 redox_disulf_1 small 97.7 0.00011 2.4E-09 58.1 7.0 36 66-108 2-39 (82)
120 cd02988 Phd_like_VIAF Phosduci 97.6 0.00025 5.4E-09 67.0 9.2 87 62-199 101-189 (192)
121 PTZ00102 disulphide isomerase; 97.6 0.00016 3.6E-09 75.6 7.7 70 62-170 48-119 (477)
122 TIGR01130 ER_PDI_fam protein d 97.5 0.00034 7.3E-09 72.4 9.0 69 62-170 17-87 (462)
123 cd02982 PDI_b'_family Protein 97.5 0.00044 9.5E-09 57.0 7.9 62 63-166 12-77 (103)
124 PLN02309 5'-adenylylsulfate re 97.4 0.00042 9.2E-09 73.5 8.7 67 62-167 364-432 (457)
125 TIGR00412 redox_disulf_2 small 97.4 0.00053 1.2E-08 54.8 7.0 56 68-171 3-60 (76)
126 smart00594 UAS UAS domain. 97.3 0.0014 3E-08 57.0 8.5 69 60-168 24-97 (122)
127 KOG2792 Putative cytochrome C 97.2 0.0021 4.7E-08 63.0 9.5 120 46-177 122-261 (280)
128 TIGR01130 ER_PDI_fam protein d 97.1 0.00095 2.1E-08 69.0 7.2 43 62-108 363-407 (462)
129 PF13728 TraF: F plasmid trans 97.1 0.0011 2.4E-08 63.7 6.8 92 55-180 112-206 (215)
130 PF14595 Thioredoxin_9: Thiore 97.1 0.0014 2.9E-08 58.2 6.6 73 60-172 38-112 (129)
131 PHA02125 thioredoxin-like prot 97.0 0.0019 4E-08 51.3 6.3 16 67-82 2-17 (75)
132 cd01659 TRX_superfamily Thiore 97.0 0.0031 6.8E-08 44.5 7.0 61 67-167 1-63 (69)
133 COG0526 TrxA Thiol-disulfide i 97.0 0.0014 3E-08 52.2 5.4 47 55-108 24-72 (127)
134 cd02973 TRX_GRX_like Thioredox 97.0 0.003 6.5E-08 48.4 6.7 20 67-86 3-24 (67)
135 KOG0852 Alkyl hydroperoxide re 97.0 0.005 1.1E-07 57.4 9.2 133 48-195 19-168 (196)
136 PF00255 GSHPx: Glutathione pe 96.9 0.0035 7.5E-08 54.2 7.3 55 49-109 7-62 (108)
137 cd03026 AhpF_NTD_C TRX-GRX-lik 96.9 0.0038 8.3E-08 51.6 7.3 70 58-173 7-78 (89)
138 cd03009 TryX_like_TryX_NRX Try 96.9 0.0031 6.7E-08 54.6 6.7 56 220-275 15-74 (131)
139 TIGR02739 TraF type-F conjugat 96.9 0.0023 4.9E-08 63.2 6.5 93 55-180 142-236 (256)
140 cd02964 TryX_like_family Trypa 96.8 0.0034 7.3E-08 54.7 6.3 58 219-276 13-74 (132)
141 KOG0191 Thioredoxin/protein di 96.7 0.0082 1.8E-07 62.0 9.8 153 62-263 46-205 (383)
142 PF13899 Thioredoxin_7: Thiore 96.7 0.0083 1.8E-07 48.2 7.8 22 61-82 15-36 (82)
143 TIGR02187 GlrX_arch Glutaredox 96.7 0.0051 1.1E-07 58.5 7.4 24 59-82 129-152 (215)
144 KOG1651 Glutathione peroxidase 96.7 0.015 3.3E-07 53.7 9.9 119 49-175 20-153 (171)
145 PRK13703 conjugal pilus assemb 96.6 0.0036 7.9E-08 61.5 6.0 92 56-180 136-229 (248)
146 PF06110 DUF953: Eukaryotic pr 96.4 0.016 3.5E-07 50.9 8.1 78 62-172 18-104 (119)
147 TIGR01295 PedC_BrcD bacterioci 96.4 0.0045 9.7E-08 54.1 4.5 45 219-265 19-64 (122)
148 KOG0908 Thioredoxin-like prote 96.4 0.0062 1.3E-07 59.7 5.7 34 58-91 16-51 (288)
149 TIGR02180 GRX_euk Glutaredoxin 96.0 0.015 3.2E-07 46.0 5.3 31 68-107 2-34 (84)
150 COG4232 Thiol:disulfide interc 95.5 0.025 5.4E-07 61.3 6.2 74 62-172 473-549 (569)
151 TIGR02196 GlrX_YruB Glutaredox 95.5 0.11 2.3E-06 39.3 8.1 16 67-82 2-17 (74)
152 TIGR02200 GlrX_actino Glutared 95.2 0.17 3.7E-06 39.0 8.6 16 67-82 2-17 (77)
153 KOG0855 Alkyl hydroperoxide re 94.7 0.087 1.9E-06 49.0 6.5 98 40-157 64-167 (211)
154 COG2143 Thioredoxin-related pr 94.7 0.088 1.9E-06 48.5 6.4 86 60-171 39-129 (182)
155 PRK11657 dsbG disulfide isomer 94.4 0.28 6E-06 48.2 9.7 101 62-171 116-233 (251)
156 cd03010 TlpA_like_DsbE TlpA-li 94.3 0.13 2.9E-06 44.0 6.4 54 220-275 22-76 (127)
157 PF00085 Thioredoxin: Thioredo 94.1 0.19 4.1E-06 40.6 6.7 49 223-271 17-66 (103)
158 TIGR00385 dsbE periplasmic pro 93.9 0.14 3E-06 46.9 6.1 52 221-275 61-113 (173)
159 cd02955 SSP411 TRX domain, SSP 93.5 0.17 3.7E-06 44.5 5.8 45 220-264 12-60 (124)
160 PRK03147 thiol-disulfide oxido 93.4 0.22 4.7E-06 44.7 6.5 55 221-275 59-115 (173)
161 cd02953 DsbDgamma DsbD gamma f 93.3 0.2 4.3E-06 41.5 5.6 45 220-264 8-56 (104)
162 cd02967 mauD Methylamine utili 93.3 0.24 5.2E-06 41.3 6.2 54 222-276 20-74 (114)
163 PF03190 Thioredox_DsbH: Prote 93.3 0.42 9E-06 44.3 8.1 78 61-172 35-117 (163)
164 cd02949 TRX_NTR TRX domain, no 93.2 0.28 6.2E-06 40.2 6.4 45 221-265 11-56 (97)
165 cd03020 DsbA_DsbC_DsbG DsbA fa 93.2 0.72 1.6E-05 43.0 9.8 98 62-171 76-184 (197)
166 cd02950 TxlA TRX-like protein 93.0 0.23 5E-06 44.3 6.0 45 220-264 17-62 (142)
167 PRK10996 thioredoxin 2; Provis 93.0 0.27 5.8E-06 43.7 6.3 45 220-264 49-94 (139)
168 cd02966 TlpA_like_family TlpA- 93.0 0.34 7.3E-06 39.0 6.4 57 221-277 17-76 (116)
169 cd02947 TRX_family TRX family; 92.8 0.29 6.2E-06 37.8 5.6 44 221-265 8-52 (93)
170 PF00462 Glutaredoxin: Glutare 92.8 0.49 1.1E-05 35.4 6.6 15 68-82 2-16 (60)
171 PRK15412 thiol:disulfide inter 92.7 0.26 5.6E-06 45.7 6.1 53 221-276 66-119 (185)
172 cd02948 TRX_NDPK TRX domain, T 92.7 0.34 7.3E-06 40.3 6.2 44 220-263 14-59 (102)
173 cd02956 ybbN ybbN protein fami 92.7 0.37 7.9E-06 39.0 6.3 44 222-265 11-55 (96)
174 cd03003 PDI_a_ERdj5_N PDIa fam 92.5 0.39 8.6E-06 39.4 6.3 47 220-266 15-62 (101)
175 cd02954 DIM1 Dim1 family; Dim1 92.5 0.4 8.8E-06 41.8 6.5 45 222-266 13-58 (114)
176 cd03001 PDI_a_P5 PDIa family, 92.3 0.34 7.5E-06 39.4 5.7 43 222-264 17-60 (103)
177 cd02968 SCO SCO (an acronym fo 92.2 0.33 7.1E-06 42.0 5.7 56 221-276 20-84 (142)
178 cd02961 PDI_a_family Protein D 92.1 0.38 8.1E-06 38.1 5.5 45 220-264 12-59 (101)
179 TIGR02661 MauD methylamine deh 91.7 0.45 9.7E-06 44.4 6.4 53 220-275 71-124 (189)
180 KOG0911 Glutaredoxin-related p 91.7 0.52 1.1E-05 45.7 6.8 162 62-277 16-190 (227)
181 PHA02278 thioredoxin-like prot 91.6 0.44 9.5E-06 40.5 5.6 45 220-264 11-56 (103)
182 TIGR00411 redox_disulf_1 small 91.5 0.64 1.4E-05 36.3 6.1 47 225-271 2-48 (82)
183 PRK09381 trxA thioredoxin; Pro 91.4 0.55 1.2E-05 39.1 6.0 46 222-267 20-66 (109)
184 TIGR01068 thioredoxin thioredo 91.3 0.48 1E-05 37.9 5.4 45 222-266 13-58 (101)
185 cd03004 PDI_a_ERdj5_C PDIa fam 91.0 0.65 1.4E-05 38.2 6.0 44 222-265 18-62 (104)
186 cd03012 TlpA_like_DipZ_like Tl 91.0 0.71 1.5E-05 39.6 6.5 42 221-262 21-64 (126)
187 cd02985 TRX_CDSP32 TRX family, 91.0 0.58 1.3E-05 39.0 5.7 43 222-265 14-57 (103)
188 KOG0190 Protein disulfide isom 90.9 0.55 1.2E-05 50.5 6.7 30 63-92 42-73 (493)
189 cd02959 ERp19 Endoplasmic reti 90.8 0.35 7.5E-06 41.8 4.3 43 220-262 16-61 (117)
190 PF13899 Thioredoxin_7: Thiore 90.7 0.22 4.7E-06 39.9 2.8 50 219-268 13-66 (82)
191 cd03002 PDI_a_MPD1_like PDI fa 90.4 0.65 1.4E-05 38.3 5.5 43 222-264 17-60 (109)
192 PF13098 Thioredoxin_2: Thiore 90.3 0.24 5.2E-06 41.2 2.8 46 221-266 3-52 (112)
193 cd02991 UAS_ETEA UAS family, E 90.1 1.9 4E-05 37.5 8.3 67 62-168 16-87 (116)
194 cd02951 SoxW SoxW family; SoxW 90.0 0.42 9E-06 41.0 4.2 47 219-265 9-60 (125)
195 cd03011 TlpA_like_ScsD_MtbDsbE 90.0 0.6 1.3E-05 39.4 5.1 52 220-275 17-70 (123)
196 cd02972 DsbA_family DsbA famil 90.0 1.8 3.8E-05 33.9 7.5 85 68-165 2-91 (98)
197 PF05176 ATP-synt_10: ATP10 pr 89.8 2.3 5E-05 42.0 9.7 117 45-171 101-230 (252)
198 KOG0912 Thiol-disulfide isomer 89.8 0.93 2E-05 46.0 6.9 72 63-172 13-86 (375)
199 cd03007 PDI_a_ERp29_N PDIa fam 89.6 1.7 3.7E-05 38.0 7.6 20 147-166 68-89 (116)
200 PRK10877 protein disulfide iso 89.4 4 8.6E-05 39.6 10.8 95 62-171 106-214 (232)
201 cd02999 PDI_a_ERp44_like PDIa 89.3 0.95 2.1E-05 37.8 5.7 41 221-262 16-57 (100)
202 TIGR02740 TraF-like TraF-like 89.2 0.59 1.3E-05 46.5 5.1 43 221-265 164-207 (271)
203 KOG0190 Protein disulfide isom 89.0 0.38 8.1E-06 51.8 3.7 30 62-91 383-414 (493)
204 cd02975 PfPDO_like_N Pyrococcu 88.9 1.4 3E-05 37.7 6.5 44 220-264 19-63 (113)
205 cd03005 PDI_a_ERp46 PDIa famil 88.8 0.87 1.9E-05 36.9 5.1 44 221-265 15-62 (102)
206 cd02984 TRX_PICOT TRX domain, 88.7 1.4 3E-05 35.5 6.1 41 223-263 14-55 (97)
207 cd03000 PDI_a_TMX3 PDIa family 88.7 1 2.2E-05 37.3 5.4 44 220-263 12-59 (104)
208 PRK11200 grxA glutaredoxin 1; 88.4 1.2 2.6E-05 35.7 5.6 34 67-108 3-38 (85)
209 TIGR01126 pdi_dom protein disu 88.4 0.79 1.7E-05 36.9 4.5 44 220-263 10-56 (102)
210 KOG3425 Uncharacterized conser 88.4 1.8 3.8E-05 38.4 6.8 39 62-107 24-72 (128)
211 cd02998 PDI_a_ERp38 PDIa famil 88.1 1.2 2.5E-05 36.1 5.4 43 222-264 17-62 (105)
212 COG2077 Tpx Peroxiredoxin [Pos 88.0 7.9 0.00017 35.7 10.9 122 40-181 19-154 (158)
213 cd02993 PDI_a_APS_reductase PD 87.7 1.2 2.6E-05 37.4 5.3 44 221-264 19-64 (109)
214 cd02995 PDI_a_PDI_a'_C PDIa fa 87.6 1.2 2.7E-05 36.0 5.2 43 222-264 17-62 (104)
215 cd02963 TRX_DnaJ TRX domain, D 86.8 1.4 3.1E-05 37.3 5.3 45 221-265 22-68 (111)
216 PTZ00051 thioredoxin; Provisio 86.7 1.8 4E-05 34.9 5.7 40 221-263 16-56 (98)
217 cd02989 Phd_like_TxnDC9 Phosdu 86.7 1.7 3.6E-05 37.2 5.7 45 220-265 19-64 (113)
218 TIGR03143 AhpF_homolog putativ 86.6 6.7 0.00014 42.7 11.6 157 83-263 357-518 (555)
219 cd02997 PDI_a_PDIR PDIa family 86.5 1.1 2.5E-05 36.3 4.4 32 220-251 14-46 (104)
220 cd02996 PDI_a_ERp44 PDIa famil 86.3 2 4.4E-05 35.6 6.0 47 220-266 15-68 (108)
221 PRK14018 trifunctional thiored 86.3 1.7 3.7E-05 47.3 6.7 55 222-276 55-116 (521)
222 PF08534 Redoxin: Redoxin; In 86.1 2.5 5.4E-05 36.8 6.7 47 221-267 26-75 (146)
223 TIGR02180 GRX_euk Glutaredoxin 85.8 1.8 3.9E-05 33.8 5.1 45 227-275 2-48 (84)
224 cd02986 DLP Dim1 family, Dim1- 85.8 2.1 4.5E-05 37.4 5.8 44 222-265 13-57 (114)
225 cd03023 DsbA_Com1_like DsbA fa 84.8 1.7 3.7E-05 37.6 4.9 39 62-108 4-44 (154)
226 cd03006 PDI_a_EFP1_N PDIa fami 84.6 3 6.5E-05 36.0 6.3 47 220-266 26-73 (113)
227 PLN00410 U5 snRNP protein, DIM 84.2 3.2 7E-05 37.6 6.5 45 222-266 22-67 (142)
228 TIGR02738 TrbB type-F conjugat 83.4 3 6.4E-05 38.0 6.0 43 221-265 48-91 (153)
229 cd02962 TMX2 TMX2 family; comp 83.4 3.5 7.6E-05 37.6 6.5 46 222-267 46-93 (152)
230 PF00462 Glutaredoxin: Glutare 83.3 2.1 4.5E-05 31.9 4.2 35 226-264 1-35 (60)
231 smart00834 CxxC_CXXC_SSSS Puta 83.1 0.72 1.6E-05 32.1 1.5 30 388-418 10-40 (41)
232 cd03419 GRX_GRXh_1_2_like Glut 82.9 3.2 6.9E-05 32.4 5.4 32 68-108 3-34 (82)
233 COG3118 Thioredoxin domain-con 82.7 2.3 5E-05 43.0 5.4 44 223-266 43-87 (304)
234 PF13462 Thioredoxin_4: Thiore 82.6 4.8 0.0001 35.3 7.0 48 56-108 5-54 (162)
235 cd02952 TRP14_like Human TRX-r 82.3 2.4 5.2E-05 37.2 4.8 43 222-264 20-70 (119)
236 PHA03050 glutaredoxin; Provisi 81.5 1.4 3.1E-05 37.8 3.0 35 67-107 15-49 (108)
237 cd03419 GRX_GRXh_1_2_like Glut 81.5 4.1 9E-05 31.7 5.5 44 226-273 2-45 (82)
238 PF00837 T4_deiodinase: Iodoth 81.2 6.8 0.00015 38.5 7.9 113 51-176 87-219 (237)
239 cd02976 NrdH NrdH-redoxin (Nrd 80.7 4.1 8.9E-05 30.4 5.1 16 67-82 2-17 (73)
240 PF05988 DUF899: Bacterial pro 80.6 9.8 0.00021 36.8 8.6 136 14-172 10-170 (211)
241 PF04592 SelP_N: Selenoprotein 80.6 9 0.0002 37.6 8.5 120 53-189 16-137 (238)
242 cd02994 PDI_a_TMX PDIa family, 80.0 4.7 0.0001 32.8 5.6 44 221-265 15-60 (101)
243 cd02973 TRX_GRX_like Thioredox 79.8 5.7 0.00012 29.9 5.6 40 226-266 3-42 (67)
244 cd02960 AGR Anterior Gradient 79.7 3.1 6.7E-05 37.1 4.6 45 219-263 19-67 (130)
245 KOG1731 FAD-dependent sulfhydr 79.7 2.7 5.9E-05 45.9 5.0 67 64-167 58-126 (606)
246 cd03017 PRX_BCP Peroxiredoxin 78.8 5.4 0.00012 34.2 5.8 55 221-276 21-78 (140)
247 PF09723 Zn-ribbon_8: Zinc rib 78.6 1.3 2.7E-05 31.7 1.5 31 388-419 10-42 (42)
248 PRK13728 conjugal transfer pro 78.4 4.3 9.3E-05 38.2 5.4 38 226-265 73-110 (181)
249 PF13192 Thioredoxin_3: Thiore 77.1 15 0.00034 28.8 7.6 21 151-174 43-63 (76)
250 cd02066 GRX_family Glutaredoxi 76.7 6.2 0.00013 29.1 5.0 16 67-82 2-17 (72)
251 cd03014 PRX_Atyp2cys Peroxired 76.5 7.7 0.00017 33.6 6.2 53 221-275 24-78 (143)
252 PF00578 AhpC-TSA: AhpC/TSA fa 75.9 13 0.00029 30.9 7.3 53 220-273 22-77 (124)
253 cd02982 PDI_b'_family Protein 75.7 6.3 0.00014 31.9 5.2 42 223-264 12-54 (103)
254 cd02970 PRX_like2 Peroxiredoxi 75.4 7.5 0.00016 33.5 5.8 44 223-266 24-69 (149)
255 PTZ00443 Thioredoxin domain-co 75.3 6.8 0.00015 38.0 6.0 43 223-265 52-95 (224)
256 cd03418 GRX_GRXb_1_3_like Glut 74.6 9.2 0.0002 29.3 5.6 34 226-263 2-35 (75)
257 PRK09437 bcp thioredoxin-depen 74.5 7.6 0.00017 34.3 5.7 55 221-276 28-85 (154)
258 TIGR02190 GlrX-dom Glutaredoxi 74.3 7.8 0.00017 30.7 5.2 41 221-265 5-45 (79)
259 KOG0191 Thioredoxin/protein di 73.8 10 0.00022 39.1 7.3 67 63-169 162-230 (383)
260 KOG0854 Alkyl hydroperoxide re 72.6 34 0.00074 32.5 9.5 115 42-171 9-144 (224)
261 COG4545 Glutaredoxin-related p 72.5 7.9 0.00017 31.7 4.7 71 68-172 5-77 (85)
262 cd03019 DsbA_DsbA DsbA family, 72.2 19 0.00042 32.0 7.9 40 222-261 14-56 (178)
263 TIGR02189 GlrX-like_plant Glut 71.8 11 0.00023 31.6 5.7 48 224-275 8-55 (99)
264 cd02957 Phd_like Phosducin (Ph 71.7 9.8 0.00021 32.1 5.5 40 223-263 24-64 (113)
265 TIGR00412 redox_disulf_2 small 71.0 10 0.00022 29.9 5.1 35 226-261 3-37 (76)
266 PF14595 Thioredoxin_9: Thiore 70.8 6.1 0.00013 35.0 4.1 53 221-274 39-92 (129)
267 PTZ00056 glutathione peroxidas 70.6 12 0.00026 35.4 6.3 54 221-274 37-99 (199)
268 TIGR02183 GRXA Glutaredoxin, G 70.6 14 0.0003 29.9 5.9 20 67-86 2-23 (86)
269 cd02965 HyaE HyaE family; HyaE 70.6 14 0.0003 32.1 6.2 43 223-265 28-72 (111)
270 PLN02919 haloacid dehalogenase 70.3 8.7 0.00019 45.4 6.4 55 220-274 417-478 (1057)
271 cd01659 TRX_superfamily Thiore 70.2 12 0.00025 25.5 4.8 39 228-267 3-41 (69)
272 KOG4277 Uncharacterized conser 70.0 4.7 0.0001 41.0 3.6 25 64-90 44-68 (468)
273 PRK00522 tpx lipid hydroperoxi 69.7 13 0.00028 33.8 6.2 52 221-274 42-95 (167)
274 cd02969 PRX_like1 Peroxiredoxi 69.3 14 0.00031 33.2 6.4 54 222-275 24-86 (171)
275 PF08209 Sgf11: Sgf11 (transcr 69.2 2.4 5.2E-05 29.1 0.9 13 403-415 3-15 (33)
276 cd03015 PRX_Typ2cys Peroxiredo 68.0 9.7 0.00021 34.6 5.0 45 221-265 27-74 (173)
277 TIGR02189 GlrX-like_plant Glut 67.1 14 0.0003 31.0 5.4 15 68-82 11-25 (99)
278 PRK10638 glutaredoxin 3; Provi 66.8 12 0.00026 29.8 4.8 36 225-264 3-38 (83)
279 cd03027 GRX_DEP Glutaredoxin ( 66.7 12 0.00025 29.0 4.6 15 68-82 4-18 (73)
280 PRK11509 hydrogenase-1 operon 66.5 5.3 0.00012 35.8 2.8 25 148-173 82-106 (132)
281 cd02992 PDI_a_QSOX PDIa family 66.4 8.6 0.00019 32.7 4.1 40 222-261 18-61 (114)
282 PF02591 DUF164: Putative zinc 66.0 3.1 6.7E-05 31.3 1.1 27 388-414 26-56 (56)
283 cd03023 DsbA_Com1_like DsbA fa 66.0 13 0.00027 32.0 5.1 38 222-260 4-42 (154)
284 PF09695 YtfJ_HI0045: Bacteria 65.4 42 0.00091 31.2 8.5 109 53-172 27-139 (160)
285 TIGR02605 CxxC_CxxC_SSSS putat 65.1 4.8 0.0001 29.5 2.0 31 388-419 10-42 (52)
286 TIGR02739 TraF type-F conjugat 64.6 11 0.00024 37.5 4.9 40 222-264 151-190 (256)
287 cd03019 DsbA_DsbA DsbA family, 64.6 12 0.00025 33.5 4.8 41 62-109 14-56 (178)
288 PRK10638 glutaredoxin 3; Provi 64.2 48 0.001 26.3 7.8 15 68-82 5-19 (83)
289 TIGR02194 GlrX_NrdH Glutaredox 63.4 12 0.00026 28.9 4.1 34 227-264 2-35 (72)
290 KOG3425 Uncharacterized conser 63.3 6.3 0.00014 35.0 2.6 44 220-263 22-76 (128)
291 TIGR02181 GRX_bact Glutaredoxi 63.1 12 0.00025 29.3 4.0 15 68-82 2-16 (79)
292 TIGR02200 GlrX_actino Glutared 62.9 16 0.00034 27.8 4.6 34 226-263 2-35 (77)
293 cd02971 PRX_family Peroxiredox 62.8 20 0.00043 30.6 5.8 54 221-275 20-76 (140)
294 KOG0914 Thioredoxin-like prote 61.4 11 0.00024 36.8 4.2 112 44-193 116-239 (265)
295 cd03029 GRX_hybridPRX5 Glutare 61.3 22 0.00048 27.2 5.2 36 225-264 2-37 (72)
296 PHA03050 glutaredoxin; Provisi 60.8 22 0.00048 30.4 5.6 52 222-277 11-65 (108)
297 TIGR00467 lysS_arch lysyl-tRNA 60.7 11 0.00025 40.9 4.6 52 350-423 136-196 (515)
298 cd03018 PRX_AhpE_like Peroxire 60.3 23 0.0005 30.6 5.8 53 221-274 25-81 (149)
299 cd03060 GST_N_Omega_like GST_N 60.2 19 0.00041 27.5 4.6 41 227-271 2-42 (71)
300 TIGR03137 AhpC peroxiredoxin. 59.5 17 0.00036 33.8 4.9 46 220-265 28-76 (187)
301 TIGR02540 gpx7 putative glutat 59.5 25 0.00055 31.1 6.0 43 220-262 19-63 (153)
302 COG4481 Uncharacterized protei 59.2 5.1 0.00011 30.7 1.2 28 384-413 14-43 (60)
303 PF13728 TraF: F plasmid trans 58.8 16 0.00035 35.1 4.9 32 231-264 129-160 (215)
304 PRK10329 glutaredoxin-like pro 58.8 20 0.00043 28.9 4.7 34 226-263 3-36 (81)
305 cd03418 GRX_GRXb_1_3_like Glut 58.6 21 0.00047 27.2 4.7 15 68-82 3-17 (75)
306 cd00340 GSH_Peroxidase Glutath 58.0 32 0.00069 30.5 6.3 42 221-263 20-63 (152)
307 cd03028 GRX_PICOT_like Glutare 57.8 33 0.00072 27.9 5.9 21 61-82 5-30 (90)
308 TIGR02181 GRX_bact Glutaredoxi 57.6 18 0.00038 28.2 4.1 34 226-263 1-34 (79)
309 PRK10329 glutaredoxin-like pro 57.5 27 0.00058 28.1 5.2 15 68-82 4-18 (81)
310 COG0526 TrxA Thiol-disulfide i 57.5 28 0.0006 26.9 5.3 41 223-263 32-73 (127)
311 cd03033 ArsC_15kD Arsenate Red 56.5 24 0.00052 30.5 5.1 45 226-274 2-47 (113)
312 cd03028 GRX_PICOT_like Glutare 56.1 28 0.00062 28.3 5.3 44 226-276 12-58 (90)
313 PRK13344 spxA transcriptional 55.5 22 0.00048 31.5 4.9 44 226-273 2-46 (132)
314 PLN02412 probable glutathione 54.9 33 0.0007 31.2 6.0 43 221-263 27-71 (167)
315 cd02977 ArsC_family Arsenate R 54.8 22 0.00048 29.6 4.5 44 226-273 1-45 (105)
316 cd03026 AhpF_NTD_C TRX-GRX-lik 54.6 31 0.00067 28.3 5.3 48 222-271 12-60 (89)
317 PHA02125 thioredoxin-like prot 54.5 25 0.00054 27.5 4.5 31 228-264 3-34 (75)
318 PLN02399 phospholipid hydroper 54.2 32 0.00069 33.7 6.1 43 221-263 97-141 (236)
319 PF13778 DUF4174: Domain of un 54.2 73 0.0016 27.6 7.8 31 143-173 63-94 (118)
320 TIGR00365 monothiol glutaredox 53.6 58 0.0012 27.1 6.8 21 62-82 10-34 (97)
321 TIGR00424 APS_reduc 5'-adenyly 52.4 28 0.0006 37.5 5.8 45 221-265 369-415 (463)
322 PF13408 Zn_ribbon_recom: Reco 52.4 6.6 0.00014 28.9 0.8 14 403-416 4-17 (58)
323 PRK12559 transcriptional regul 52.3 36 0.00078 30.1 5.6 44 226-273 2-46 (131)
324 cd02987 Phd_like_Phd Phosducin 52.3 31 0.00068 31.9 5.5 40 223-263 83-123 (175)
325 PF13913 zf-C2HC_2: zinc-finge 52.2 6.6 0.00014 25.0 0.7 13 403-415 1-13 (25)
326 TIGR02196 GlrX_YruB Glutaredox 52.0 47 0.001 24.4 5.6 33 226-262 2-34 (74)
327 PRK00750 lysK lysyl-tRNA synth 51.8 20 0.00044 38.9 4.7 54 349-424 142-206 (510)
328 COG0695 GrxC Glutaredoxin and 51.7 42 0.00091 27.0 5.5 43 226-273 3-45 (80)
329 cd03020 DsbA_DsbC_DsbG DsbA fa 50.8 26 0.00057 32.5 4.8 50 222-273 76-126 (197)
330 PRK00293 dipZ thiol:disulfide 50.7 27 0.00059 38.4 5.6 45 220-265 471-519 (571)
331 TIGR01206 lysW lysine biosynth 50.3 15 0.00033 27.9 2.5 28 388-417 7-35 (54)
332 cd02972 DsbA_family DsbA famil 50.3 28 0.0006 26.9 4.2 34 228-261 3-36 (98)
333 PTZ00256 glutathione peroxidas 49.5 43 0.00094 30.8 6.0 43 221-263 38-83 (183)
334 PRK13703 conjugal pilus assemb 49.4 29 0.00064 34.3 5.0 41 221-264 143-183 (248)
335 cd03041 GST_N_2GST_N GST_N fam 49.2 31 0.00067 26.9 4.3 34 226-263 2-35 (77)
336 cd02958 UAS UAS family; UAS is 49.1 11 0.00023 31.9 1.7 25 219-243 13-38 (114)
337 cd03027 GRX_DEP Glutaredoxin ( 47.9 40 0.00086 25.9 4.7 34 226-263 3-36 (73)
338 PF13462 Thioredoxin_4: Thiore 47.8 41 0.0009 29.3 5.4 43 225-267 15-59 (162)
339 cd00570 GST_N_family Glutathio 47.6 42 0.0009 24.0 4.6 35 228-266 3-37 (71)
340 PLN02309 5'-adenylylsulfate re 46.3 46 0.00099 35.8 6.3 43 221-263 363-407 (457)
341 PF02114 Phosducin: Phosducin; 46.2 44 0.00096 33.3 5.8 91 62-201 145-237 (265)
342 cd03045 GST_N_Delta_Epsilon GS 45.8 45 0.00097 25.2 4.7 33 227-263 2-34 (74)
343 COG3024 Uncharacterized protei 45.6 9.3 0.0002 30.1 0.7 16 401-416 4-19 (65)
344 PF07191 zinc-ribbons_6: zinc- 45.4 15 0.00033 29.5 1.9 25 400-424 26-55 (70)
345 cd03055 GST_N_Omega GST_N fami 44.7 60 0.0013 26.1 5.4 46 222-271 15-60 (89)
346 PRK01655 spxA transcriptional 44.6 49 0.0011 29.2 5.3 44 226-273 2-46 (131)
347 cd03036 ArsC_like Arsenate Red 44.5 47 0.001 28.2 5.0 44 226-273 1-45 (111)
348 PF14369 zf-RING_3: zinc-finge 44.3 17 0.00038 25.0 1.8 24 387-412 6-29 (35)
349 KOG0907 Thioredoxin [Posttrans 43.9 58 0.0013 27.8 5.4 42 222-264 20-62 (106)
350 PRK02935 hypothetical protein; 43.9 13 0.00027 32.3 1.3 21 404-424 70-91 (110)
351 PF01475 FUR: Ferric uptake re 43.8 14 0.00031 31.6 1.7 51 350-417 43-93 (120)
352 cd03032 ArsC_Spx Arsenate Redu 43.0 59 0.0013 27.7 5.4 45 226-274 2-47 (115)
353 PRK12759 bifunctional gluaredo 42.6 41 0.00088 35.5 5.2 40 225-268 3-42 (410)
354 cd03059 GST_N_SspA GST_N famil 42.5 49 0.0011 24.9 4.4 41 227-271 2-42 (73)
355 cd02976 NrdH NrdH-redoxin (Nrd 42.4 55 0.0012 24.1 4.6 34 226-263 2-35 (73)
356 PF10601 zf-LITAF-like: LITAF- 42.3 22 0.00048 28.0 2.4 23 399-421 2-24 (73)
357 PF13248 zf-ribbon_3: zinc-rib 41.9 11 0.00023 24.1 0.5 13 404-416 2-14 (26)
358 PRK11200 grxA glutaredoxin 1; 41.7 49 0.0011 26.3 4.5 39 225-263 2-41 (85)
359 PF06073 DUF934: Bacterial pro 41.5 27 0.0006 30.4 3.1 72 116-193 6-80 (110)
360 cd02988 Phd_like_VIAF Phosduci 41.4 42 0.0009 31.7 4.6 38 223-263 102-140 (192)
361 cd00674 LysRS_core_class_I cat 41.1 31 0.00066 35.9 3.9 26 398-423 163-198 (353)
362 PF13192 Thioredoxin_3: Thiore 38.5 86 0.0019 24.5 5.3 34 226-260 3-36 (76)
363 PF09237 GAGA: GAGA factor; I 38.4 13 0.00028 28.2 0.5 14 403-416 23-36 (54)
364 KOG1088 Uncharacterized conser 38.0 16 0.00035 32.2 1.1 14 401-414 95-108 (124)
365 PF05768 DUF836: Glutaredoxin- 37.4 66 0.0014 25.6 4.6 51 225-277 1-51 (81)
366 cd02066 GRX_family Glutaredoxi 37.3 71 0.0015 23.2 4.5 34 226-263 2-35 (72)
367 PF01396 zf-C4_Topoisom: Topoi 37.0 15 0.00032 25.9 0.6 12 405-416 2-13 (39)
368 smart00594 UAS UAS domain. 36.9 28 0.0006 29.9 2.4 28 217-244 21-49 (122)
369 PF11023 DUF2614: Protein of u 36.3 14 0.00031 32.2 0.5 22 403-424 68-90 (114)
370 PF13453 zf-TFIIB: Transcripti 35.7 18 0.00039 25.5 0.9 12 406-417 1-12 (41)
371 PRK00398 rpoP DNA-directed RNA 34.9 31 0.00066 24.8 2.0 12 404-415 21-32 (46)
372 KOG1752 Glutaredoxin and relat 34.7 1.4E+02 0.0029 25.7 6.2 34 63-106 13-46 (104)
373 PRK07218 replication factor A; 34.4 16 0.00035 38.9 0.6 11 406-416 299-309 (423)
374 cd03037 GST_N_GRX2 GST_N famil 33.6 90 0.002 23.5 4.6 32 228-263 3-34 (71)
375 PF10013 DUF2256: Uncharacteri 33.4 19 0.00041 26.2 0.6 11 405-415 9-19 (42)
376 PF13717 zinc_ribbon_4: zinc-r 33.1 24 0.00053 24.4 1.2 20 392-413 12-34 (36)
377 TIGR00100 hypA hydrogenase nic 32.9 34 0.00073 29.7 2.3 44 375-422 43-89 (115)
378 cd03035 ArsC_Yffb Arsenate Red 32.9 94 0.002 26.3 5.0 45 226-274 1-46 (105)
379 cd03040 GST_N_mPGES2 GST_N fam 32.8 87 0.0019 24.0 4.5 32 226-261 2-33 (77)
380 PF04423 Rad50_zn_hook: Rad50 32.8 18 0.00038 27.0 0.5 10 406-415 22-31 (54)
381 smart00714 LITAF Possible memb 32.7 34 0.00074 26.5 2.1 20 402-421 1-20 (67)
382 PRK10606 btuE putative glutath 32.5 1.1E+02 0.0024 28.7 5.8 43 220-263 22-66 (183)
383 COG1393 ArsC Arsenate reductas 32.5 1.1E+02 0.0024 26.7 5.4 49 225-277 2-51 (117)
384 TIGR02190 GlrX-dom Glutaredoxi 31.7 48 0.001 26.1 2.9 16 67-82 10-25 (79)
385 COG1579 Zn-ribbon protein, pos 31.5 18 0.00039 35.7 0.4 29 386-414 197-231 (239)
386 PRK14178 bifunctional 5,10-met 31.1 5.6E+02 0.012 25.8 11.9 131 224-361 28-173 (279)
387 COG2176 PolC DNA polymerase II 30.8 59 0.0013 39.0 4.3 70 322-416 874-951 (1444)
388 cd03029 GRX_hybridPRX5 Glutare 30.6 57 0.0012 24.9 3.1 15 68-82 4-18 (72)
389 PRK12775 putative trifunctiona 30.6 23 0.00051 41.6 1.2 22 404-425 796-817 (1006)
390 TIGR00365 monothiol glutaredox 30.6 1.4E+02 0.003 24.8 5.5 27 233-263 26-52 (97)
391 TIGR03143 AhpF_homolog putativ 30.4 99 0.0022 33.7 5.9 30 59-88 472-503 (555)
392 PF13417 GST_N_3: Glutathione 30.4 97 0.0021 23.8 4.4 41 228-272 1-41 (75)
393 PF03119 DNA_ligase_ZBD: NAD-d 30.3 23 0.00049 23.3 0.6 17 406-422 1-20 (28)
394 TIGR01031 rpmF_bact ribosomal 30.3 30 0.00064 26.4 1.3 17 400-416 22-38 (55)
395 PRK12759 bifunctional gluaredo 29.9 1.4E+02 0.003 31.5 6.7 16 67-82 4-19 (410)
396 TIGR01616 nitro_assoc nitrogen 29.9 1.2E+02 0.0025 26.8 5.2 46 225-274 2-48 (126)
397 cd03049 GST_N_3 GST_N family, 29.4 1.2E+02 0.0026 22.9 4.7 40 228-271 3-44 (73)
398 PRK11657 dsbG disulfide isomer 29.2 76 0.0017 31.1 4.4 40 221-260 115-155 (251)
399 PF06110 DUF953: Eukaryotic pr 29.2 1.4E+02 0.0031 26.2 5.6 42 221-262 17-68 (119)
400 PF00763 THF_DHG_CYH: Tetrahyd 29.1 1.8E+02 0.004 25.0 6.3 58 223-281 30-87 (117)
401 PF14149 YhfH: YhfH-like prote 28.9 12 0.00025 26.5 -1.0 13 405-417 14-26 (37)
402 COG4312 Uncharacterized protei 28.8 1.9E+02 0.0041 28.5 6.7 75 46-136 55-143 (247)
403 PF13240 zinc_ribbon_2: zinc-r 28.7 24 0.00053 22.1 0.5 10 407-416 2-11 (23)
404 PTZ00062 glutaredoxin; Provisi 28.5 1E+02 0.0022 29.5 5.0 39 224-263 18-57 (204)
405 smart00661 RPOL9 RNA polymeras 28.4 66 0.0014 23.2 2.9 33 388-421 5-39 (52)
406 PF14803 Nudix_N_2: Nudix N-te 28.4 35 0.00077 23.5 1.3 22 392-413 10-31 (34)
407 PTZ00253 tryparedoxin peroxida 28.4 1.1E+02 0.0024 28.5 5.2 46 221-266 34-82 (199)
408 PF07754 DUF1610: Domain of un 28.0 27 0.00059 22.4 0.6 9 403-411 15-23 (24)
409 COG1999 Uncharacterized protei 27.7 1.4E+02 0.003 28.5 5.7 51 218-268 62-118 (207)
410 TIGR02098 MJ0042_CXXC MJ0042 f 27.2 30 0.00065 23.6 0.8 13 404-416 25-37 (38)
411 PRK15000 peroxidase; Provision 26.5 1.2E+02 0.0027 28.5 5.1 44 222-265 33-79 (200)
412 PF03884 DUF329: Domain of unk 26.4 19 0.00042 27.7 -0.3 14 403-416 1-14 (57)
413 TIGR01617 arsC_related transcr 25.6 1.4E+02 0.0031 25.4 4.9 46 227-276 2-48 (117)
414 cd03034 ArsC_ArsC Arsenate Red 25.6 1.4E+02 0.003 25.4 4.8 45 226-274 1-46 (112)
415 smart00659 RPOLCX RNA polymera 25.4 35 0.00076 24.8 0.9 13 401-413 16-28 (44)
416 TIGR03759 conj_TIGR03759 integ 25.2 1.7E+02 0.0037 28.2 5.7 45 223-271 109-153 (200)
417 KOG0910 Thioredoxin-like prote 25.0 1.5E+02 0.0031 27.4 5.0 44 222-265 60-104 (150)
418 PF13743 Thioredoxin_5: Thiore 24.8 66 0.0014 29.6 2.9 24 146-169 136-159 (176)
419 PF08271 TF_Zn_Ribbon: TFIIB z 24.8 38 0.00081 24.0 1.0 14 404-417 19-32 (43)
420 PF14216 DUF4326: Domain of un 24.4 29 0.00063 28.8 0.4 24 57-85 60-85 (86)
421 PRK13190 putative peroxiredoxi 24.0 1.4E+02 0.0031 28.0 5.0 46 221-266 25-73 (202)
422 PF05768 DUF836: Glutaredoxin- 23.9 1E+02 0.0022 24.5 3.5 33 67-108 2-36 (81)
423 PF11009 DUF2847: Protein of u 23.6 4.8E+02 0.01 22.5 8.1 29 143-172 63-92 (105)
424 PRK10853 putative reductase; P 23.4 1.5E+02 0.0033 25.6 4.8 46 226-275 2-48 (118)
425 PRK13189 peroxiredoxin; Provis 23.3 1.5E+02 0.0032 28.5 5.1 46 221-266 33-81 (222)
426 COG1384 LysS Lysyl-tRNA synthe 23.0 98 0.0021 33.8 4.1 26 397-422 164-198 (521)
427 PF07315 DUF1462: Protein of u 22.9 1.6E+02 0.0035 25.0 4.4 59 227-285 1-70 (93)
428 PRK10954 periplasmic protein d 22.8 1.2E+02 0.0026 28.5 4.3 30 61-90 35-69 (207)
429 PF06053 DUF929: Domain of unk 22.7 93 0.002 30.9 3.6 29 62-90 57-87 (249)
430 PF01323 DSBA: DSBA-like thior 22.6 1.7E+02 0.0038 26.1 5.2 40 225-264 1-41 (193)
431 PRK10382 alkyl hydroperoxide r 22.6 1.7E+02 0.0037 27.4 5.2 45 221-265 29-76 (187)
432 PRK00564 hypA hydrogenase nick 22.4 47 0.001 28.9 1.3 44 374-421 42-89 (117)
433 cd03058 GST_N_Tau GST_N family 22.4 1.9E+02 0.0041 21.9 4.7 38 228-269 3-40 (74)
434 PF12760 Zn_Tnp_IS1595: Transp 22.4 48 0.001 23.9 1.2 16 401-417 15-30 (46)
435 PRK14089 ipid-A-disaccharide s 22.1 5.9E+02 0.013 26.3 9.5 52 222-273 166-217 (347)
436 PRK14189 bifunctional 5,10-met 22.0 8.3E+02 0.018 24.7 12.2 131 224-361 34-179 (285)
437 cd03051 GST_N_GTT2_like GST_N 21.2 1.5E+02 0.0032 22.0 3.8 33 227-263 2-34 (74)
438 PRK00418 DNA gyrase inhibitor; 21.1 46 0.001 26.1 0.9 14 402-415 4-17 (62)
439 COG3054 Predicted transcriptio 21.0 99 0.0022 28.8 3.1 102 59-171 55-160 (184)
440 PF02630 SCO1-SenC: SCO1/SenC; 20.8 3E+02 0.0065 25.2 6.4 61 216-276 45-113 (174)
441 TIGR02183 GRXA Glutaredoxin, G 20.5 1.5E+02 0.0034 23.7 4.0 39 225-263 1-40 (86)
442 PRK13599 putative peroxiredoxi 20.4 2.4E+02 0.0052 26.9 5.9 45 221-265 26-73 (215)
443 PF01096 TFIIS_C: Transcriptio 20.3 63 0.0014 22.6 1.4 14 405-418 1-14 (39)
444 PRK10954 periplasmic protein d 20.3 1.4E+02 0.003 28.0 4.2 52 210-261 24-81 (207)
445 PF13719 zinc_ribbon_5: zinc-r 20.1 59 0.0013 22.5 1.2 13 404-416 2-14 (37)
No 1
>PF14577 SEO_C: Sieve element occlusion C-terminus
Probab=100.00 E-value=2.2e-94 Score=684.78 Aligned_cols=234 Identities=57% Similarity=1.141 Sum_probs=231.1
Q ss_pred chhHHHhhhhcccceeccccCCCccccccccCCeEEEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCCChhHHh
Q 014387 191 TAREEALWREETWRLELLVDGLDPVILNWMAEGRYICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSNPKDRVR 270 (425)
Q Consensus 191 ~~~~~~L~~~~~w~~~ll~d~~d~~i~~~~~egk~I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~~e~f~ 270 (425)
++|+++||++++|.++||+||+||.|.+|+.+|||||||||+|.+|||+||.++++++++|++++||+|||++|++|+++
T Consensus 1 ~sree~Lw~e~~W~l~lL~d~Idp~i~~wi~e~kyI~iYGG~D~eWIq~Ft~~a~~va~~a~i~LEm~yvGKsn~~e~v~ 80 (235)
T PF14577_consen 1 KSREESLWKEETWFLELLVDGIDPTILNWIKEGKYIFIYGGEDMEWIQEFTKAARKVAKAADIQLEMVYVGKSNPREQVR 80 (235)
T ss_pred CchHHHhhhhhhHHHHHHHcccCHhHHHHhhCCcEEEEECCCCHHHHHHHHHHHHHHHHhcCCceEEEEecCCChHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccccCCCcchhhhhHhhhhhhhhhhhcCCCCCCchHHHHHHHHhcccCCCCceEEEeccCceeeeccch
Q 014387 271 RNNDTIASENLSHIWQDLTSIWYFWVRLESMWYSKVQLGRNAETDHVMQEIMRMLTYDSSEGGWAVFARGSAEMASAKGA 350 (425)
Q Consensus 271 ~~~~~i~~e~ls~~~~~~~~~~~FW~~les~~~sk~~~~~~~~~d~i~~ei~~ll~~~~~~~GWavls~G~~~~~~~~g~ 350 (425)
+++++|++|+|||+|+|||+|||||+|||||++||+|+|+++++|++||||++||||||+++|||||||||+++++|||+
T Consensus 81 ~~~~~i~~e~ls~~~~d~t~v~~FW~rlESm~~SK~qlg~~~~~D~i~qEV~~LLs~d~~~~GWavlskGs~v~~~ghG~ 160 (235)
T PF14577_consen 81 KIIATITSEKLSHSWEDPTMVWFFWTRLESMLFSKIQLGKTDENDPIMQEVKKLLSYDQDEQGWAVLSKGSNVMVKGHGE 160 (235)
T ss_pred HHhhhhhhcccccccCCcchhHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHhCCCCCCCceEEEecCCceeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhhhhccCCCCCcHHHHHHhhccCC-CCCCccceecCCCCCCCCceeecCCCCcccceeeeeeccCC
Q 014387 351 IFLTCMQEYNTVWKDQVEPKGFMPAMRDHLGQLH-TPHHCNRLVLPGTAGKIPERIICSECGRVMEKFLMYRCCDE 425 (425)
Q Consensus 351 ~~~~~~~~f~~~Wk~~v~~~gf~~a~~~~~~~~~-~~~~c~~~~~~~~~g~i~~~i~C~~C~r~Me~~~~y~cc~~ 425 (425)
+||+||++|+. ||++|+++||++||+|||++++ +||||||+++|+++|+||++|+||||||+||+||+||||||
T Consensus 161 ~~l~tl~~f~~-Wk~~v~~~GF~~Af~e~~~~~~~~~~~C~~~~~p~~~g~ipe~i~CpeC~R~MEk~v~YkCChd 235 (235)
T PF14577_consen 161 TMLQTLAEFDE-WKENVPEKGFDPAFKEYYEKLHDTPHHCNRLEFPNSAGRIPETIVCPECGRPMEKFVMYKCCHD 235 (235)
T ss_pred cHHHHHHHhhH-hhccCcccCHHHHHHHHHhccCCCCCCCeeEeccCcccCCCceeECCCCCCchhhceeeeccCC
Confidence 99999999999 9999999999999999999988 69999999999999999999999999999999999999997
No 2
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.94 E-value=5.3e-27 Score=211.67 Aligned_cols=132 Identities=26% Similarity=0.352 Sum_probs=115.7
Q ss_pred cccCCCCCeEecc-ccCCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHH
Q 014387 47 LVDGATKTRVNLE-VLRRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQF 123 (425)
Q Consensus 47 l~dg~~g~~V~ls-~LkGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F 123 (425)
.+.+.+|..+.++ .|+||+|+|||||+||||||.|| |+++|+++++ ....||||||| +|++.+++
T Consensus 16 ~l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~----~~~~fEVvfVS--------~D~~~~~~ 83 (157)
T KOG2501|consen 16 RLRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKD----NAAPFEVVFVS--------SDRDEESL 83 (157)
T ss_pred eeeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHh----cCCceEEEEEe--------cCCCHHHH
Confidence 4456667788887 79999999999999999999999 9999999986 23589999999 68888999
Q ss_pred HHHHh--CCCceeeccCcccChHHHHHHHHhCCCCCCCeEEEECCCCcEEccccchhhhhcCCccCCCCchhHHHhhhhc
Q 014387 124 QSLQS--AMPWYTVYHPSLIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVCPNALHMMWIWGSLAYPFSTAREEALWREE 201 (425)
Q Consensus 124 ~~~~~--~mPW~aV~~p~l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~~na~~~I~~~g~~aFPft~~~~~~L~~~~ 201 (425)
++|+. .++|++||| .| +.++.+.++|.+++||++++++|+|++|+.+|+.+|..+|. ....+++.+|
T Consensus 84 ~~y~~~~~~~W~~iPf---~d-~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~d~r~~v~~~g~-------~~~~a~~~ew 152 (157)
T KOG2501|consen 84 DEYMLEHHGDWLAIPF---GD-DLIQKLSEKYEVKGIPALVILKPDGTVVTEDARLLVQLGGS-------ADPKALVDEW 152 (157)
T ss_pred HHHHHhcCCCeEEecC---CC-HHHHHHHHhcccCcCceeEEecCCCCEehHhhHHHHHhhcc-------cCHHHHHHHH
Confidence 88876 689999998 45 46889999999999999999999999999999999999986 5667777663
No 3
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.93 E-value=8.8e-26 Score=196.54 Aligned_cols=126 Identities=24% Similarity=0.425 Sum_probs=110.7
Q ss_pred cCCCCCeEeccccCCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHH
Q 014387 49 DGATKTRVNLEVLRRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSL 126 (425)
Q Consensus 49 dg~~g~~V~ls~LkGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~ 126 (425)
.+.+|+.+++++++||+|+|+|||+||++|+.++ |.++|+++++ + +.+++|++|++ |.+.+.|.++
T Consensus 4 ~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~---~-~~~~~vv~is~--------d~~~~~~~~~ 71 (131)
T cd03009 4 LRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKE---S-GKNFEIVFISW--------DRDEESFNDY 71 (131)
T ss_pred cccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHh---c-CCCEEEEEEEC--------CCCHHHHHHH
Confidence 3567889999999999999999999999999998 9999999975 2 34799999995 4455788888
Q ss_pred HhCCCceeeccCcccChHHHHHHHHhCCCCCCCeEEEECCCCcEEccccchhhhhcCCccCCC
Q 014387 127 QSAMPWYTVYHPSLIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVCPNALHMMWIWGSLAYPF 189 (425)
Q Consensus 127 ~~~mPW~aV~~p~l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~~na~~~I~~~g~~aFPf 189 (425)
.+.+||+.++|+. ......+.+.|++.++|+++|||++|+|+.++|++++..||..||||
T Consensus 72 ~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~ 131 (131)
T cd03009 72 FSKMPWLAVPFSD---RERRSRLNRTFKIEGIPTLIILDADGEVVTTDARELVLEYGADAFPF 131 (131)
T ss_pred HHcCCeeEcccCC---HHHHHHHHHHcCCCCCCEEEEECCCCCEEcccHHHHHhhcccccCCC
Confidence 8889999998843 23446888999999999999999999999999999999999999998
No 4
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.93 E-value=2.7e-26 Score=206.68 Aligned_cols=136 Identities=21% Similarity=0.397 Sum_probs=109.6
Q ss_pred HHhcCCCCCCCcccCCCCCeEeccccCCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhc-cCCCceEEEEEeccCCC
Q 014387 36 ALIYPKDDLLPLVDGATKTRVNLEVLRRKMVLLLISDLDISQEEVII--LEQLYSEARQHQT-RHESQYEVVWLPIVDPN 112 (425)
Q Consensus 36 ~LI~~k~~~~pl~dg~~g~~V~ls~LkGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~-k~~~~fEIV~IsIvd~s 112 (425)
.||.+++++ ++.+-.++++++|+||+|+|||||+|||||+.++ |.++|+++++... +..++|+||+||.
T Consensus 2 ~~~~~~~~~----~~~~~~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~---- 73 (146)
T cd03008 2 VLIKNNSDR----DELDTEREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSM---- 73 (146)
T ss_pred eeeccCccc----cchhcccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEEC----
Confidence 356666554 3444568899999999999999999999999999 9999999975210 1234799999994
Q ss_pred CCCchHHHHHHHHHHhCCC--ceeeccCcccChHHHHHHHHhCCCCCCCeEEEECCCCcEEccccchhhhhcCCccC
Q 014387 113 MPWTDNKQKQFQSLQSAMP--WYTVYHPSLIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVCPNALHMMWIWGSLAY 187 (425)
Q Consensus 113 ~~w~D~~~~~F~~~~~~mP--W~aV~~p~l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~~na~~~I~~~g~~aF 187 (425)
|.+.+.+.++.++|+ |+++|+. +. ....+.+.|++.++|++||||++|+|++.+++..|...|.+||
T Consensus 74 ----D~~~~~~~~f~~~~~~~~~~~p~~---~~-~~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~~g~~~~ 142 (146)
T cd03008 74 ----DQSEQQQESFLKDMPKKWLFLPFE---DE-FRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGPACF 142 (146)
T ss_pred ----CCCHHHHHHHHHHCCCCceeeccc---ch-HHHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHHHHHHHH
Confidence 555566777777777 9888873 32 2357899999999999999999999999999999999998775
No 5
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.91 E-value=5.8e-24 Score=186.19 Aligned_cols=127 Identities=28% Similarity=0.449 Sum_probs=107.7
Q ss_pred CcccCCCCCeEeccccCCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHH
Q 014387 46 PLVDGATKTRVNLEVLRRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQF 123 (425)
Q Consensus 46 pl~dg~~g~~V~ls~LkGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F 123 (425)
.++||+ +.+++++++||+|+|+|||+||++|+.++ |+++|+++++ + ..+++|++|++ |.+.+.+
T Consensus 2 ~~~~~~--~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~---~-~~~v~vi~Vs~--------d~~~~~~ 67 (132)
T cd02964 2 FLLDGE--GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKE---E-GKNFEIVFVSR--------DRSEESF 67 (132)
T ss_pred ccccCC--ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhh---c-CCCeEEEEEec--------CCCHHHH
Confidence 456776 69999999999999999999999999999 9999999975 1 24799999995 3444566
Q ss_pred HHHHhCC-CceeeccCcccChHHHHHHHHhCCCCCCCeEEEECCCCcEEccccchhhhh-cCCccCCC
Q 014387 124 QSLQSAM-PWYTVYHPSLIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVCPNALHMMWI-WGSLAYPF 189 (425)
Q Consensus 124 ~~~~~~m-PW~aV~~p~l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~~na~~~I~~-~g~~aFPf 189 (425)
..+..++ +|+.++| .|......+++.|++.++|++++||++|+|+.+++..++.. ||..||||
T Consensus 68 ~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~v~~iPt~~lid~~G~iv~~~~~~~~~~~~~~~~~~~ 132 (132)
T cd02964 68 NEYFSEMPPWLAVPF---EDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDEVEEDPGACAFPW 132 (132)
T ss_pred HHHHhcCCCeEeecc---CcHHHHHHHHHHcCCCCCCEEEEECCCCCEEchhHHHHHHhCcccccCCC
Confidence 6666667 7999887 34334567889999999999999999999999999999987 99999998
No 6
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.80 E-value=4.8e-19 Score=145.46 Aligned_cols=91 Identities=24% Similarity=0.445 Sum_probs=76.9
Q ss_pred CCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCC--CceeeccC
Q 014387 63 RKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAM--PWYTVYHP 138 (425)
Q Consensus 63 GK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~m--PW~aV~~p 138 (425)
||+|+|+|||+||+||+.++ |.++|+++++ +++++||+||+ |++.+.++++.+++ +|+.+++.
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-----~~~v~~v~Vs~--------d~~~~~~~~~~~~~~~~~~~~~~~ 67 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-----KDDVEFVFVSL--------DEDEEEWKKFLKKNNFPWYNVPFD 67 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-----TTTEEEEEEE---------SSSHHHHHHHHHTCTTSSEEEETT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEEe--------CCCHHHHHHHHHhcCCCceEEeeC
Confidence 89999999999999999999 9999999973 35899999995 56677888877666 99999973
Q ss_pred cccChHHHHHHHHhCCCCCCCeEEEECCCCcE
Q 014387 139 SLIDRAVIQFIKEEWQFGKKPILVVLDPHGKV 170 (425)
Q Consensus 139 ~l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkV 170 (425)
. .....+.+.|++.++|+++|||++|+|
T Consensus 68 ~----~~~~~l~~~~~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 68 D----DNNSELLKKYGINGIPTLVLLDPDGKI 95 (95)
T ss_dssp T----HHHHHHHHHTT-TSSSEEEEEETTSBE
T ss_pred c----chHHHHHHHCCCCcCCEEEEECCCCCC
Confidence 2 346789999999999999999999987
No 7
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.69 E-value=7.5e-17 Score=139.91 Aligned_cols=108 Identities=19% Similarity=0.146 Sum_probs=83.3
Q ss_pred CCeEeccccCCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCC
Q 014387 53 KTRVNLEVLRRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAM 130 (425)
Q Consensus 53 g~~V~ls~LkGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~m 130 (425)
|+.+++++++||+|+|+|||+||++|+.++ |+++|+++++ .+++||.|+..+.+ .+++.+..+++..+
T Consensus 13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~------~~~~vi~i~~~~~~---~~~~~~~~~~~~~~- 82 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKD------DGLVVIGVHSPEFA---FERDLANVKSAVLR- 82 (126)
T ss_pred CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCc------CCeEEEEeccCccc---cccCHHHHHHHHHH-
Confidence 578999999999999999999999999999 9999999964 47999999742110 12334444444433
Q ss_pred CceeeccCcccChHHHHHHHHhCCCCCCCeEEEECCCCcEEccc
Q 014387 131 PWYTVYHPSLIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVCPN 174 (425)
Q Consensus 131 PW~aV~~p~l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~~n 174 (425)
+.++||.+.|.. ..+.+.|++.++|+++|||++|+|+...
T Consensus 83 --~~~~~p~~~D~~--~~~~~~~~v~~~P~~~vid~~G~v~~~~ 122 (126)
T cd03012 83 --YGITYPVANDND--YATWRAYGNQYWPALYLIDPTGNVRHVH 122 (126)
T ss_pred --cCCCCCEEECCc--hHHHHHhCCCcCCeEEEECCCCcEEEEE
Confidence 234566666754 4778899999999999999999998654
No 8
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.65 E-value=4.8e-16 Score=137.25 Aligned_cols=114 Identities=20% Similarity=0.211 Sum_probs=86.3
Q ss_pred CCCCCccc--C--CCCCeEeccccCCCEEEEEEecC-CChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCC
Q 014387 42 DDLLPLVD--G--ATKTRVNLEVLRRKMVLLLISDL-DISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMP 114 (425)
Q Consensus 42 ~~~~pl~d--g--~~g~~V~ls~LkGK~VlL~FsAs-WC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~ 114 (425)
++.+|.|. + .+|+.+++++++||+|+|+|||+ |||||+.++ |.++++++++ +++++|+|+..+
T Consensus 3 G~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~------~~v~~v~v~~~~---- 72 (146)
T PF08534_consen 3 GDKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKD------KGVDVVGVSSDD---- 72 (146)
T ss_dssp TSB--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT------TTCEEEEEEESS----
T ss_pred CCCCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhcc------CceEEEEecccC----
Confidence 44556544 3 78999999999999999999999 999999999 9999999864 369999998632
Q ss_pred CchHHHHHHHHHHhCCCceeeccCcccChHHHHHHHHhCCCC---------CCCeEEEECCCCcEEcccc
Q 014387 115 WTDNKQKQFQSLQSAMPWYTVYHPSLIDRAVIQFIKEEWQFG---------KKPILVVLDPHGKVVCPNA 175 (425)
Q Consensus 115 w~D~~~~~F~~~~~~mPW~aV~~p~l~D~~~~~~L~~~f~v~---------~iPtlVvLD~~GkVv~~na 175 (425)
+.....|.+- +.++||.+.|. ...+.+.|++. ++|+++|||++|+|+....
T Consensus 73 --~~~~~~~~~~------~~~~~~~~~D~--~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~ 132 (146)
T PF08534_consen 73 --DPPVREFLKK------YGINFPVLSDP--DGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHV 132 (146)
T ss_dssp --SHHHHHHHHH------TTTTSEEEEET--TSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEE
T ss_pred --CHHHHHHHHh------hCCCceEEech--HHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEe
Confidence 3334444332 22344445564 24788999988 9999999999999987544
No 9
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.64 E-value=1.1e-15 Score=129.20 Aligned_cols=103 Identities=15% Similarity=0.200 Sum_probs=75.8
Q ss_pred CCCCCeEeccccC-CCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHH
Q 014387 50 GATKTRVNLEVLR-RKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSL 126 (425)
Q Consensus 50 g~~g~~V~ls~Lk-GK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~ 126 (425)
..+|+.+++++++ ||+|+|+|||+||++|+.++ |.+++++++ .++.|+.|+ + .+.+...++
T Consensus 7 ~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~-------~~~~vi~v~--~-------~~~~~~~~~ 70 (114)
T cd02967 7 TIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEA-------DWLDVVLAS--D-------GEKAEHQRF 70 (114)
T ss_pred cCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhc-------CCcEEEEEe--C-------CCHHHHHHH
Confidence 4568899999998 99999999999999999998 888888763 257787665 2 122334333
Q ss_pred HhCCCceeeccCcccChHHHHHHHHhCCCCCCCeEEEECCCCcEEccc
Q 014387 127 QSAMPWYTVYHPSLIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVCPN 174 (425)
Q Consensus 127 ~~~mPW~aV~~p~l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~~n 174 (425)
.++++.- .+|.+.+. .+.+.|++.++|++++||++|+|+.++
T Consensus 71 ~~~~~~~--~~p~~~~~----~~~~~~~~~~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 71 LKKHGLE--AFPYVLSA----ELGMAYQVSKLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred HHHhCCC--CCcEEecH----HHHhhcCCCCcCeEEEECCCCeEEecc
Confidence 3333211 13444332 477899999999999999999998765
No 10
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.57 E-value=2.4e-15 Score=135.01 Aligned_cols=115 Identities=18% Similarity=0.180 Sum_probs=74.8
Q ss_pred cCCCCCeEeccccCCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCC-CC-CchHHHHHHH
Q 014387 49 DGATKTRVNLEVLRRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPN-MP-WTDNKQKQFQ 124 (425)
Q Consensus 49 dg~~g~~V~ls~LkGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s-~~-w~D~~~~~F~ 124 (425)
...+|+.+++++++||+|+|+|||+||| |+.++ |+++|+++++ .+++||.|++.+-. .+ -+.+..++|.
T Consensus 8 ~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~------~~~~vv~v~~~~~~~~~~~~~~~~~~f~ 80 (152)
T cd00340 8 KDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKD------RGLVVLGFPCNQFGGQEPGSNEEIKEFC 80 (152)
T ss_pred ECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcC------CCEEEEEeccCccccCCCCCHHHHHHHH
Confidence 3467899999999999999999999999 99999 9999999963 36999999852100 00 0112234443
Q ss_pred HHHhCCCceeeccCcccChHHHH-HHHHhCC--CCCCC-----------eEEEECCCCcEEcccc
Q 014387 125 SLQSAMPWYTVYHPSLIDRAVIQ-FIKEEWQ--FGKKP-----------ILVVLDPHGKVVCPNA 175 (425)
Q Consensus 125 ~~~~~mPW~aV~~p~l~D~~~~~-~L~~~f~--v~~iP-----------tlVvLD~~GkVv~~na 175 (425)
+-... ++||.+.|.+... .+.+.|+ +.++| +++|||++|+|+....
T Consensus 81 ~~~~~-----~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~ 140 (152)
T cd00340 81 ETNYG-----VTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFA 140 (152)
T ss_pred HHhcC-----CCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEEC
Confidence 21112 3445443321111 1233344 34556 8999999999997543
No 11
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.57 E-value=1.6e-14 Score=123.17 Aligned_cols=111 Identities=22% Similarity=0.297 Sum_probs=86.0
Q ss_pred CCCCCcc--cCCCCCeEeccccCCCEEEEEEecC-CChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCc
Q 014387 42 DDLLPLV--DGATKTRVNLEVLRRKMVLLLISDL-DISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWT 116 (425)
Q Consensus 42 ~~~~pl~--dg~~g~~V~ls~LkGK~VlL~FsAs-WC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~ 116 (425)
|+++|.| .+.+|+.+++++|+||+++|+||++ |||+|...+ |.++|+++++ .++.|+.|+. | .
T Consensus 2 G~~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~------~~~~vi~is~-d-----~ 69 (124)
T PF00578_consen 2 GDKAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKD------KGVQVIGIST-D-----D 69 (124)
T ss_dssp TSBGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT------TTEEEEEEES-S-----S
T ss_pred cCCCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhcc------ceEEeeeccc-c-----c
Confidence 3455644 4567899999999999999999999 999999999 9999999974 3799999995 2 2
Q ss_pred hHHHHHHHHHHhCCCceeeccCcccChHHHHHHHHhCCCC------CCCeEEEECCCCcEEc
Q 014387 117 DNKQKQFQSLQSAMPWYTVYHPSLIDRAVIQFIKEEWQFG------KKPILVVLDPHGKVVC 172 (425)
Q Consensus 117 D~~~~~F~~~~~~mPW~aV~~p~l~D~~~~~~L~~~f~v~------~iPtlVvLD~~GkVv~ 172 (425)
....++|.+... ++||.+.|+. ..+.+.|++. .+|+.+|||++|+|+.
T Consensus 70 ~~~~~~~~~~~~------~~~~~~~D~~--~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 70 PEEIKQFLEEYG------LPFPVLSDPD--GELAKAFGIEDEKDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp HHHHHHHHHHHT------CSSEEEEETT--SHHHHHTTCEETTTSEESEEEEEEETTSBEEE
T ss_pred ccchhhhhhhhc------cccccccCcc--hHHHHHcCCccccCCceEeEEEEECCCCEEEe
Confidence 223344443222 3455555643 4788899998 9999999999999974
No 12
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.57 E-value=8.1e-15 Score=136.12 Aligned_cols=111 Identities=20% Similarity=0.141 Sum_probs=74.6
Q ss_pred CCCCcccC--CC--CCeEecccc-CCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCC
Q 014387 43 DLLPLVDG--AT--KTRVNLEVL-RRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPW 115 (425)
Q Consensus 43 ~~~pl~dg--~~--g~~V~ls~L-kGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w 115 (425)
.++|.|.. .+ |+.++++.+ +||+|+|+|||+||+||+.++ |.++++ ++++|+.|+..|
T Consensus 43 ~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----------~~~~vi~v~~~~----- 107 (185)
T PRK15412 43 KPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----------QGIRVVGMNYKD----- 107 (185)
T ss_pred CCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----------cCCEEEEEECCC-----
Confidence 34565544 23 466777766 899999999999999999999 776642 158999998521
Q ss_pred chHHHHHHHHHHhCCCceeeccCcccChHHHHHHHHhCCCCCCCeEEEECCCCcEEcccc
Q 014387 116 TDNKQKQFQSLQSAMPWYTVYHPSLIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVCPNA 175 (425)
Q Consensus 116 ~D~~~~~F~~~~~~mPW~aV~~p~l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~~na 175 (425)
+..+..+|.+- ...||.. .+.|.. ..+...|++.++|++++||++|+|+....
T Consensus 108 ~~~~~~~~~~~-~~~~~~~----~~~D~~--~~~~~~~gv~~~P~t~vid~~G~i~~~~~ 160 (185)
T PRK15412 108 DRQKAISWLKE-LGNPYAL----SLFDGD--GMLGLDLGVYGAPETFLIDGNGIIRYRHA 160 (185)
T ss_pred CHHHHHHHHHH-cCCCCce----EEEcCC--ccHHHhcCCCcCCeEEEECCCceEEEEEe
Confidence 12223333221 1233321 123543 35678899999999999999999986543
No 13
>PLN02412 probable glutathione peroxidase
Probab=99.55 E-value=8.1e-15 Score=134.21 Aligned_cols=117 Identities=16% Similarity=0.248 Sum_probs=76.9
Q ss_pred ccCCCCCeEeccccCCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCC---CCCchHHHHH
Q 014387 48 VDGATKTRVNLEVLRRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPN---MPWTDNKQKQ 122 (425)
Q Consensus 48 ~dg~~g~~V~ls~LkGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s---~~w~D~~~~~ 122 (425)
+.+.+|+.+++++++||+|+|+|||+|||+|+.++ |+++|+++++ .+++||.||..+.. .+..++..+.
T Consensus 14 l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~------~g~~vvgv~~~~~~~~~~~~~~~~~~~ 87 (167)
T PLN02412 14 VKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKE------QGFEILAFPCNQFLGQEPGSNEEIQQT 87 (167)
T ss_pred EECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhh------CCcEEEEecccccccCCCCCHHHHHHH
Confidence 34578899999999999999999999999999988 9999999975 36999999962210 0011122333
Q ss_pred H-HHHHhCCCceeeccCcccChH------HHHHHHH----hCC--CCCCCeEEEECCCCcEEcccc
Q 014387 123 F-QSLQSAMPWYTVYHPSLIDRA------VIQFIKE----EWQ--FGKKPILVVLDPHGKVVCPNA 175 (425)
Q Consensus 123 F-~~~~~~mPW~aV~~p~l~D~~------~~~~L~~----~f~--v~~iPtlVvLD~~GkVv~~na 175 (425)
| +++.-..|+++- .|.. .-+.+.. .++ +...|+++|||++|+|+....
T Consensus 88 ~~~~~~~~fpvl~~-----~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~ 148 (167)
T PLN02412 88 VCTRFKAEFPIFDK-----VDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYA 148 (167)
T ss_pred HHHccCCCCceEeE-----EeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEEC
Confidence 3 222233343321 0111 1112221 122 666899999999999997653
No 14
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.55 E-value=3.3e-14 Score=122.81 Aligned_cols=97 Identities=13% Similarity=0.047 Sum_probs=72.4
Q ss_pred CeEeccccCCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHH--hC
Q 014387 54 TRVNLEVLRRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQ--SA 129 (425)
Q Consensus 54 ~~V~ls~LkGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~--~~ 129 (425)
+.+++++++||+|+|+|||+|||+|+.++ |.++++++ +++||.|++.+ ..+...++. ..
T Consensus 16 ~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---------~~~vv~v~~~~--------~~~~~~~~~~~~~ 78 (127)
T cd03010 16 KTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG---------RVPIYGINYKD--------NPENALAWLARHG 78 (127)
T ss_pred ccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---------CcEEEEEECCC--------CHHHHHHHHHhcC
Confidence 78999999999999999999999999988 77765542 38999998522 223333332 23
Q ss_pred CCceeeccCcccChHHHHHHHHhCCCCCCCeEEEECCCCcEEcc
Q 014387 130 MPWYTVYHPSLIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVCP 173 (425)
Q Consensus 130 mPW~aV~~p~l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~~ 173 (425)
.||..+. .|.. ..+.+.|++.++|++++||++|+|+..
T Consensus 79 ~~~~~~~----~D~~--~~~~~~~~v~~~P~~~~ld~~G~v~~~ 116 (127)
T cd03010 79 NPYAAVG----FDPD--GRVGIDLGVYGVPETFLIDGDGIIRYK 116 (127)
T ss_pred CCCceEE----ECCc--chHHHhcCCCCCCeEEEECCCceEEEE
Confidence 4543332 3543 467888999999999999999999854
No 15
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.54 E-value=2.1e-14 Score=135.46 Aligned_cols=121 Identities=12% Similarity=0.065 Sum_probs=77.2
Q ss_pred CCCccc--CCCCCeEeccccCCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHH
Q 014387 44 LLPLVD--GATKTRVNLEVLRRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNK 119 (425)
Q Consensus 44 ~~pl~d--g~~g~~V~ls~LkGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~ 119 (425)
.+|.|. ..+|+.+++++++||+|+|+|||+|||||+.++ |+++|+++++ ++++||.||+.+.... ...+
T Consensus 18 ~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~------~g~~vvgv~~~~~~~~-e~d~ 90 (199)
T PTZ00056 18 SIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNP------LGLEILAFPTSQFLNQ-EFPN 90 (199)
T ss_pred CCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhc------CceEEEEecchhccCC-CCCC
Confidence 355443 467899999999999999999999999999999 9999999964 4699999986210000 0011
Q ss_pred HHHHHHHHhCCCceeeccCcccCh--------HHHHHH----HHhCCCC----CCC---eEEEECCCCcEEccc
Q 014387 120 QKQFQSLQSAMPWYTVYHPSLIDR--------AVIQFI----KEEWQFG----KKP---ILVVLDPHGKVVCPN 174 (425)
Q Consensus 120 ~~~F~~~~~~mPW~aV~~p~l~D~--------~~~~~L----~~~f~v~----~iP---tlVvLD~~GkVv~~n 174 (425)
.+...++..+ +.++||.+.|. +..+.+ ...|+.. ++| +++|||++|+|+...
T Consensus 91 ~e~~~~f~~~---~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~ 161 (199)
T PTZ00056 91 TKDIRKFNDK---NKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYF 161 (199)
T ss_pred HHHHHHHHHH---cCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEe
Confidence 2223333222 22345543221 112222 2334443 233 799999999999644
No 16
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.54 E-value=9.5e-14 Score=128.85 Aligned_cols=125 Identities=16% Similarity=0.254 Sum_probs=80.6
Q ss_pred CCCCCCCccc--CCCCCeEeccccCCCEE-EEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCC--C
Q 014387 40 PKDDLLPLVD--GATKTRVNLEVLRRKMV-LLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDP--N 112 (425)
Q Consensus 40 ~k~~~~pl~d--g~~g~~V~ls~LkGK~V-lL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~--s 112 (425)
+....+|.|. +.+|+.+++++++||+| ++.+||+|||||+.++ |+++|+++++ .+++||.||..+. .
T Consensus 15 ~~~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~------~gv~vv~vs~~~~~~~ 88 (183)
T PTZ00256 15 PPTKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKS------QGLEILAFPCNQFMEQ 88 (183)
T ss_pred CCCCcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhh------CCcEEEEEeccccccc
Confidence 3344566554 57899999999999964 5566999999999999 9999999964 3699999985210 0
Q ss_pred CCCchHHHHHHHHHHhCCCceeeccCcccC--hHH------HHHHHH--------hCCCCCCCe---EEEECCCCcEEcc
Q 014387 113 MPWTDNKQKQFQSLQSAMPWYTVYHPSLID--RAV------IQFIKE--------EWQFGKKPI---LVVLDPHGKVVCP 173 (425)
Q Consensus 113 ~~w~D~~~~~F~~~~~~mPW~aV~~p~l~D--~~~------~~~L~~--------~f~v~~iPt---lVvLD~~GkVv~~ 173 (425)
..++..+..+|-. .+ +.++||.+.| ..+ -+.+.+ .+++.++|+ ++|||++|+|+..
T Consensus 89 ~~~~~~~~~~f~~--~~---~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~ 163 (183)
T PTZ00256 89 EPWDEPEIKEYVQ--KK---FNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKY 163 (183)
T ss_pred CCCCHHHHHHHHH--Hh---cCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEE
Confidence 0111223333321 12 2345665532 111 112222 246779995 6999999999975
Q ss_pred cc
Q 014387 174 NA 175 (425)
Q Consensus 174 na 175 (425)
..
T Consensus 164 ~~ 165 (183)
T PTZ00256 164 FS 165 (183)
T ss_pred EC
Confidence 43
No 17
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.54 E-value=4.3e-14 Score=150.21 Aligned_cols=116 Identities=15% Similarity=0.129 Sum_probs=88.4
Q ss_pred CCCcc--cCCCCCeEeccccCCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHH
Q 014387 44 LLPLV--DGATKTRVNLEVLRRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNK 119 (425)
Q Consensus 44 ~~pl~--dg~~g~~V~ls~LkGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~ 119 (425)
++|.| .+.+|+.+.++ +||+|+|+|||+||+||+.++ |.++|++++. ++++||.|++.+.+ .+.+
T Consensus 37 ~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~------~~v~VI~Vs~~~~~---~e~~ 105 (521)
T PRK14018 37 TLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKF------SSANLITVASPGFL---HEKK 105 (521)
T ss_pred CCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhcc------CCeEEEEEeccccc---cccc
Confidence 46654 45678888887 999999999999999999999 9999999853 36999999852110 2444
Q ss_pred HHHHHHHHhCCCceeeccCcccChHHHHHHHHhCCCCCCCeEEEECCCCcEEccc
Q 014387 120 QKQFQSLQSAMPWYTVYHPSLIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVCPN 174 (425)
Q Consensus 120 ~~~F~~~~~~mPW~aV~~p~l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~~n 174 (425)
.+.|.++.+.+.+.. +|.+.|.. ..+.+.|+++++|+++|||++|+|+...
T Consensus 106 ~~~~~~~~~~~~y~~--~pV~~D~~--~~lak~fgV~giPTt~IIDkdGkIV~~~ 156 (521)
T PRK14018 106 DGDFQKWYAGLDYPK--LPVLTDNG--GTLAQSLNISVYPSWAIIGKDGDVQRIV 156 (521)
T ss_pred HHHHHHHHHhCCCcc--cceecccc--HHHHHHcCCCCcCeEEEEcCCCeEEEEE
Confidence 567777666665432 34455653 4788999999999999999999998653
No 18
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.52 E-value=8.8e-14 Score=125.81 Aligned_cols=107 Identities=19% Similarity=0.309 Sum_probs=85.0
Q ss_pred ccCCCCCeEeccccCCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHH
Q 014387 48 VDGATKTRVNLEVLRRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQS 125 (425)
Q Consensus 48 ~dg~~g~~V~ls~LkGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~ 125 (425)
+.+.+|+.+++++++||+++|+|||+||++|+.++ |.++++++++ .+++++.|+. |.+.+.+.+
T Consensus 46 ~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~------~~~~vi~i~~--------d~~~~~~~~ 111 (173)
T PRK03147 46 LTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKE------KGVEIIAVNV--------DETELAVKN 111 (173)
T ss_pred eecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhc------CCeEEEEEEc--------CCCHHHHHH
Confidence 44578999999999999999999999999999998 9999999964 3689999985 333444555
Q ss_pred HHhCCCceeeccCcccChHHHHHHHHhCCCCCCCeEEEECCCCcEEcc
Q 014387 126 LQSAMPWYTVYHPSLIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVCP 173 (425)
Q Consensus 126 ~~~~mPW~aV~~p~l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~~ 173 (425)
+..+++ ++||.+.|.. ..+.+.|++.++|+++++|++|+++..
T Consensus 112 ~~~~~~---~~~~~~~d~~--~~~~~~~~v~~~P~~~lid~~g~i~~~ 154 (173)
T PRK03147 112 FVNRYG---LTFPVAIDKG--RQVIDAYGVGPLPTTFLIDKDGKVVKV 154 (173)
T ss_pred HHHHhC---CCceEEECCc--chHHHHcCCCCcCeEEEECCCCcEEEE
Confidence 444432 3566556643 478889999999999999999999854
No 19
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.51 E-value=1.1e-13 Score=124.10 Aligned_cols=114 Identities=22% Similarity=0.300 Sum_probs=76.4
Q ss_pred cCCCCCeEeccccCCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEecc--CCCCCCchHHHHHHH
Q 014387 49 DGATKTRVNLEVLRRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIV--DPNMPWTDNKQKQFQ 124 (425)
Q Consensus 49 dg~~g~~V~ls~LkGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIv--d~s~~w~D~~~~~F~ 124 (425)
.+.+|+.+++++++||+|+|+|||+|||+|+.++ |.++|+++++ ++++||.||.. ..+..-+.+...+|.
T Consensus 8 ~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~------~~~~v~~i~~~~~~~~~~d~~~~~~~f~ 81 (153)
T TIGR02540 8 KDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGP------SHFNVLAFPCNQFGESEPDSSKEIESFA 81 (153)
T ss_pred ECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhh------CCeEEEEEeccccccCCCCCHHHHHHHH
Confidence 3467889999999999999999999999999999 9999999964 37999999841 111000122334443
Q ss_pred HHHhCCCceeeccCcccC-----hH---HHHHHHHhCCCCCCCe----EEEECCCCcEEcccc
Q 014387 125 SLQSAMPWYTVYHPSLID-----RA---VIQFIKEEWQFGKKPI----LVVLDPHGKVVCPNA 175 (425)
Q Consensus 125 ~~~~~mPW~aV~~p~l~D-----~~---~~~~L~~~f~v~~iPt----lVvLD~~GkVv~~na 175 (425)
+- + +.++||.+.| .. ..+.+.. +..++|+ ++|||++|+|+....
T Consensus 82 ~~--~---~~~~fp~~~d~~~~~~~~~~~~~~~~~--~~~~~p~~~~~tflID~~G~v~~~~~ 137 (153)
T TIGR02540 82 RR--N---YGVTFPMFSKIKILGSEAEPAFRFLVD--SSKKEPRWNFWKYLVNPEGQVVKFWR 137 (153)
T ss_pred HH--h---cCCCCCccceEecCCCCCCcHHHHHHh--cCCCCCCCccEEEEEcCCCcEEEEEC
Confidence 21 1 1245665433 11 1122211 3346898 999999999987543
No 20
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.51 E-value=1.3e-13 Score=125.63 Aligned_cols=115 Identities=17% Similarity=0.173 Sum_probs=86.3
Q ss_pred cCCCCCeEecccc-CCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHH
Q 014387 49 DGATKTRVNLEVL-RRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQS 125 (425)
Q Consensus 49 dg~~g~~V~ls~L-kGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~ 125 (425)
.+.+|+.++++++ +||+|+|+||++|||+|...+ |.++++++++ .+++||.|++.+....+. ++.+.+.+
T Consensus 10 ~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~------~~v~~v~is~d~~~~~~~-d~~~~~~~ 82 (171)
T cd02969 10 PDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGA------KGVAVVAINSNDIEAYPE-DSPENMKA 82 (171)
T ss_pred cCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhh------CCeEEEEEecCccccccc-cCHHHHHH
Confidence 4466889999998 999999999999999999988 9999999953 379999999622111011 23455555
Q ss_pred HHhCCCceeeccCcccChHHHHHHHHhCCCCCCCeEEEECCCCcEEcccc
Q 014387 126 LQSAMPWYTVYHPSLIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVCPNA 175 (425)
Q Consensus 126 ~~~~mPW~aV~~p~l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~~na 175 (425)
+.+.. .++||.+.|.. +.+.+.|++..+|.++|||++|+|+...+
T Consensus 83 ~~~~~---~~~~~~l~D~~--~~~~~~~~v~~~P~~~lid~~G~v~~~~~ 127 (171)
T cd02969 83 KAKEH---GYPFPYLLDET--QEVAKAYGAACTPDFFLFDPDGKLVYRGR 127 (171)
T ss_pred HHHHC---CCCceEEECCc--hHHHHHcCCCcCCcEEEECCCCeEEEeec
Confidence 54433 23456666764 47888999999999999999999986544
No 21
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.51 E-value=1.2e-13 Score=113.50 Aligned_cols=107 Identities=20% Similarity=0.239 Sum_probs=80.9
Q ss_pred cCCCCCeEeccccCCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHH
Q 014387 49 DGATKTRVNLEVLRRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSL 126 (425)
Q Consensus 49 dg~~g~~V~ls~LkGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~ 126 (425)
...+|+.+++++++||+++|+||++||++|+..+ |.+++++++ +.++.++.|++ |. + ..+...++
T Consensus 5 ~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~------~~~~~~~~v~~-d~-----~-~~~~~~~~ 71 (116)
T cd02966 5 PDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYK------DDGVEVVGVNV-DD-----D-DPAAVKAF 71 (116)
T ss_pred cCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhC------CCCeEEEEEEC-CC-----C-CHHHHHHH
Confidence 3456789999999999999999999999999988 888888874 24688999985 21 1 13344444
Q ss_pred HhCCCceeeccCcccChHHHHHHHHhCCCCCCCeEEEECCCCcEEcc
Q 014387 127 QSAMPWYTVYHPSLIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVCP 173 (425)
Q Consensus 127 ~~~mPW~aV~~p~l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~~ 173 (425)
....+ +++|.+.|. ...+.+.|++.++|+++|+|++|+|+..
T Consensus 72 ~~~~~---~~~~~~~~~--~~~~~~~~~~~~~P~~~l~d~~g~v~~~ 113 (116)
T cd02966 72 LKKYG---ITFPVLLDP--DGELAKAYGVRGLPTTFLIDRDGRIRAR 113 (116)
T ss_pred HHHcC---CCcceEEcC--cchHHHhcCcCccceEEEECCCCcEEEE
Confidence 43333 344444554 3578899999999999999999999864
No 22
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.51 E-value=5.3e-14 Score=136.25 Aligned_cols=122 Identities=18% Similarity=0.199 Sum_probs=81.4
Q ss_pred CCCCcc--cCCCCCeEeccccCCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCC--c
Q 014387 43 DLLPLV--DGATKTRVNLEVLRRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPW--T 116 (425)
Q Consensus 43 ~~~pl~--dg~~g~~V~ls~LkGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w--~ 116 (425)
..+|.| .+.+|+.+++++++||+|+|+|||+||++|+.++ |+++|+++++ ++++||.|++.+..... +
T Consensus 77 ~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~------~Gv~VIgV~~d~~~~~e~~s 150 (236)
T PLN02399 77 KSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKT------QGFEILAFPCNQFGGQEPGS 150 (236)
T ss_pred CCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhc------CCcEEEEEecccccccCCCC
Confidence 345544 4578999999999999999999999999999999 9999999964 36999999963210000 1
Q ss_pred hHHHHHHHHHHhCCCceeeccCccc--ChHH------HHHHHHhCC------CCCCCeEEEECCCCcEEcccc
Q 014387 117 DNKQKQFQSLQSAMPWYTVYHPSLI--DRAV------IQFIKEEWQ------FGKKPILVVLDPHGKVVCPNA 175 (425)
Q Consensus 117 D~~~~~F~~~~~~mPW~aV~~p~l~--D~~~------~~~L~~~f~------v~~iPtlVvLD~~GkVv~~na 175 (425)
.....+|-. .+ +.++||.+. |..+ .+.++..++ +...|+++|||++|+|+....
T Consensus 151 ~~ei~~f~~--~~---~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~ 218 (236)
T PLN02399 151 NPEIKQFAC--TR---FKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYP 218 (236)
T ss_pred HHHHHHHHH--Hh---cCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEEC
Confidence 223344421 11 234566653 3212 112222222 356799999999999997543
No 23
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.49 E-value=1.3e-13 Score=126.30 Aligned_cols=108 Identities=16% Similarity=0.130 Sum_probs=81.5
Q ss_pred CCeEeccccCCCEEEEEEe-cCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHH-h
Q 014387 53 KTRVNLEVLRRKMVLLLIS-DLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQ-S 128 (425)
Q Consensus 53 g~~V~ls~LkGK~VlL~Fs-AsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~-~ 128 (425)
++.+++++++||+|+|+|| ++||++|..++ |+++|+++++ .++.|+.||. | .....+.|.+.. .
T Consensus 19 ~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~------~~v~vv~Is~-d-----~~~~~~~~~~~~~~ 86 (173)
T cd03015 19 FKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKK------LNAEVLGVST-D-----SHFSHLAWRNTPRK 86 (173)
T ss_pred ceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHH------CCCEEEEEec-C-----CHHHHHHHHHhhhh
Confidence 4799999999999999999 89999999999 9999999964 3699999985 2 222334564432 1
Q ss_pred CCCceeeccCcccChHHHHHHHHhCCCC------CCCeEEEECCCCcEEccc
Q 014387 129 AMPWYTVYHPSLIDRAVIQFIKEEWQFG------KKPILVVLDPHGKVVCPN 174 (425)
Q Consensus 129 ~mPW~aV~~p~l~D~~~~~~L~~~f~v~------~iPtlVvLD~~GkVv~~n 174 (425)
.+-+..++||.+.|.. ..+.+.|++. .+|+++|||++|+|+..+
T Consensus 87 ~~~~~~~~f~~l~D~~--~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~ 136 (173)
T cd03015 87 EGGLGKINFPLLADPK--KKISRDYGVLDEEEGVALRGTFIIDPEGIIRHIT 136 (173)
T ss_pred hCCccCcceeEEECCc--hhHHHHhCCccccCCceeeEEEEECCCCeEEEEE
Confidence 1112234555566653 4677889986 688999999999998765
No 24
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.48 E-value=1.9e-13 Score=119.55 Aligned_cols=114 Identities=18% Similarity=0.279 Sum_probs=81.4
Q ss_pred ccCCCCCeEeccccCCCEEEEEEecCCChH-hHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHH
Q 014387 48 VDGATKTRVNLEVLRRKMVLLLISDLDISQ-EEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQ 124 (425)
Q Consensus 48 ~dg~~g~~V~ls~LkGK~VlL~FsAsWC~p-Cr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~ 124 (425)
+...+|+.+++++++||+++|+||++||++ |...+ |.++|+++++ ++..+++||+|++ |. ..++.+..+
T Consensus 7 l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~---~~~~~v~~v~vs~-d~----~~d~~~~~~ 78 (142)
T cd02968 7 LTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGA---DGGDDVQVVFISV-DP----ERDTPEVLK 78 (142)
T ss_pred EEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhH---hhcCceEEEEEEE-CC----CCCCHHHHH
Confidence 345678899999999999999999999998 99988 9999999975 2114699999996 21 111223333
Q ss_pred HHHhC--CCceeeccCcccChHHHHHHHHhCCCCCC--------------CeEEEECCCCcEEcc
Q 014387 125 SLQSA--MPWYTVYHPSLIDRAVIQFIKEEWQFGKK--------------PILVVLDPHGKVVCP 173 (425)
Q Consensus 125 ~~~~~--mPW~aV~~p~l~D~~~~~~L~~~f~v~~i--------------PtlVvLD~~GkVv~~ 173 (425)
++... .+|..+..+ .+....+.+.|++... |.++||||+|+|+..
T Consensus 79 ~~~~~~~~~~~~l~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 139 (142)
T cd02968 79 AYAKAFGPGWIGLTGT----PEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRY 139 (142)
T ss_pred HHHHHhCCCcEEEECC----HHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEe
Confidence 33332 456555532 1234578888886543 579999999999853
No 25
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.48 E-value=1.4e-13 Score=128.22 Aligned_cols=117 Identities=16% Similarity=0.139 Sum_probs=87.1
Q ss_pred CCCCCcccC---CCCC--eEeccccCCCEEEEEEe-cCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCC
Q 014387 42 DDLLPLVDG---ATKT--RVNLEVLRRKMVLLLIS-DLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNM 113 (425)
Q Consensus 42 ~~~~pl~dg---~~g~--~V~ls~LkGK~VlL~Fs-AsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~ 113 (425)
++..|.|.. .+|+ .+++++|+||+|+|+|| |+||++|..++ |.++|+++++ .+++||.||. |
T Consensus 5 G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~------~gv~vi~VS~-D--- 74 (187)
T TIGR03137 5 NTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKK------LGVEVYSVST-D--- 74 (187)
T ss_pred CCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHh------cCCcEEEEeC-C---
Confidence 455666543 2454 68888999999999999 99999999999 9999999964 3799999995 2
Q ss_pred CCchHHHHHHHHHHhCCCceeeccCcccChHHHHHHHHhCCCC------CCCeEEEECCCCcEEccc
Q 014387 114 PWTDNKQKQFQSLQSAMPWYTVYHPSLIDRAVIQFIKEEWQFG------KKPILVVLDPHGKVVCPN 174 (425)
Q Consensus 114 ~w~D~~~~~F~~~~~~mPW~aV~~p~l~D~~~~~~L~~~f~v~------~iPtlVvLD~~GkVv~~n 174 (425)
.....+.|.+.... ...++||.+.|+. ..+.+.|++. ..|+++|||++|+|+...
T Consensus 75 --~~~~~~~~~~~~~~--~~~l~fpllsD~~--~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~ 135 (187)
T TIGR03137 75 --THFVHKAWHDTSEA--IGKITYPMLGDPT--GVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVE 135 (187)
T ss_pred --CHHHHHHHHhhhhh--ccCcceeEEECCc--cHHHHHhCCcccCCCceeeEEEEECCCCEEEEEE
Confidence 22334555432211 1345677777863 5788899986 469999999999998654
No 26
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.47 E-value=1.9e-13 Score=156.40 Aligned_cols=118 Identities=17% Similarity=0.266 Sum_probs=85.6
Q ss_pred CCCCCcccC----CCCCeEec-cccCCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCC
Q 014387 42 DDLLPLVDG----ATKTRVNL-EVLRRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMP 114 (425)
Q Consensus 42 ~~~~pl~dg----~~g~~V~l-s~LkGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~ 114 (425)
+..+|.|.. .+|+.+++ ++++||+|+|+|||+||+||+.++ |+++|+++++ ++|+||.|+..+-.
T Consensus 394 g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~------~~~~vvgV~~~~~D-- 465 (1057)
T PLN02919 394 ATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKD------QPFTVVGVHSAKFD-- 465 (1057)
T ss_pred CCcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCC------CCeEEEEEeccccc--
Confidence 345666654 35788888 589999999999999999999999 9999999953 36999999742100
Q ss_pred CchHHHHHHHHHHhCCCceeeccCcccChHHHHHHHHhCCCCCCCeEEEECCCCcEEcc
Q 014387 115 WTDNKQKQFQSLQSAMPWYTVYHPSLIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVCP 173 (425)
Q Consensus 115 w~D~~~~~F~~~~~~mPW~aV~~p~l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~~ 173 (425)
.+++.+.+.++..+ +.+.||.+.|.. ..+.+.|++.++|+++|||++|+++.+
T Consensus 466 -~~~~~~~~~~~~~~---~~i~~pvv~D~~--~~~~~~~~V~~iPt~ilid~~G~iv~~ 518 (1057)
T PLN02919 466 -NEKDLEAIRNAVLR---YNISHPVVNDGD--MYLWRELGVSSWPTFAVVSPNGKLIAQ 518 (1057)
T ss_pred -ccccHHHHHHHHHH---hCCCccEEECCc--hHHHHhcCCCccceEEEECCCCeEEEE
Confidence 12233444443322 123445445543 367789999999999999999999865
No 27
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.47 E-value=6.7e-14 Score=126.87 Aligned_cols=59 Identities=17% Similarity=0.221 Sum_probs=52.5
Q ss_pred cccccCCeEEEEEeCCC-cchHHHHHHHHHHHH---HHcCCCeeEEEeccCCChhHHhhhhhh
Q 014387 217 LNWMAEGRYICLYGGED-MDWIRKFTTATNAVA---KTAGIPLGMVYVGKSNPKDRVRRNNDT 275 (425)
Q Consensus 217 ~~~~~egk~I~lY~g~d-~~w~r~FT~~l~~~~---k~~~~~~Eiv~Vs~d~~~e~f~~~~~~ 275 (425)
.+..++||.|+|||||+ |+|||+|||.|+++. ++.+.+||+||||+|++++++++|+..
T Consensus 27 ~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~ 89 (157)
T KOG2501|consen 27 ASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLE 89 (157)
T ss_pred HhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHh
Confidence 34468999999999999 999999999999994 456778999999999999999999854
No 28
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.46 E-value=4.4e-13 Score=125.09 Aligned_cols=108 Identities=18% Similarity=0.267 Sum_probs=76.1
Q ss_pred CCCCCccc--CCCCCeEec--cccCCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCC
Q 014387 42 DDLLPLVD--GATKTRVNL--EVLRRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPW 115 (425)
Q Consensus 42 ~~~~pl~d--g~~g~~V~l--s~LkGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w 115 (425)
+++.|.|. ..+|+.+++ +.++||+|+|+|||+|||+|+.++ |.+++++. ++.+++|+. |
T Consensus 49 G~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~---------~~~vv~Is~-~----- 113 (189)
T TIGR02661 49 GDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE---------ETDVVMISD-G----- 113 (189)
T ss_pred CCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc---------CCcEEEEeC-C-----
Confidence 34556554 467999999 468999999999999999999998 88887543 467899982 2
Q ss_pred chHHHHHHHHHHhCCCceeeccCcccChHHHHHHHHhCCCCCCCeEEEECCCCcEEcc
Q 014387 116 TDNKQKQFQSLQSAMPWYTVYHPSLIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVCP 173 (425)
Q Consensus 116 ~D~~~~~F~~~~~~mPW~aV~~p~l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~~ 173 (425)
+.++.++|-+-. .+ ++|.+. . ...+.+.|++.++|+.++||++|+|+..
T Consensus 114 ~~~~~~~~~~~~-~~-----~~~~~~-~--~~~i~~~y~v~~~P~~~lID~~G~I~~~ 162 (189)
T TIGR02661 114 TPAEHRRFLKDH-EL-----GGERYV-V--SAEIGMAFQVGKIPYGVLLDQDGKIRAK 162 (189)
T ss_pred CHHHHHHHHHhc-CC-----Ccceee-c--hhHHHHhccCCccceEEEECCCCeEEEc
Confidence 233344443211 11 222211 1 1357789999999999999999999864
No 29
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.45 E-value=4.7e-13 Score=116.82 Aligned_cols=106 Identities=21% Similarity=0.215 Sum_probs=81.5
Q ss_pred cCCCCCeEeccccCCCEEEEEEe-cCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHH
Q 014387 49 DGATKTRVNLEVLRRKMVLLLIS-DLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQS 125 (425)
Q Consensus 49 dg~~g~~V~ls~LkGK~VlL~Fs-AsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~ 125 (425)
...+|+.+++++++||+++|+|| ++|||+|...+ |.++++++++ ++++||.|++ | +.....+|
T Consensus 9 ~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~------~~~~vv~is~-d-----~~~~~~~~-- 74 (140)
T cd03017 9 PDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKA------LGAVVIGVSP-D-----SVESHAKF-- 74 (140)
T ss_pred cCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHH------CCCEEEEEcC-C-----CHHHHHHH--
Confidence 34568999999999999999999 58999999988 9999999964 3699999985 2 22333333
Q ss_pred HHhCCCceeeccCcccChHHHHHHHHhCCCCCC---------CeEEEECCCCcEEccc
Q 014387 126 LQSAMPWYTVYHPSLIDRAVIQFIKEEWQFGKK---------PILVVLDPHGKVVCPN 174 (425)
Q Consensus 126 ~~~~mPW~aV~~p~l~D~~~~~~L~~~f~v~~i---------PtlVvLD~~GkVv~~n 174 (425)
.... .++||.+.|.. +.+.+.|++... |+.+|||++|+|+...
T Consensus 75 -~~~~---~~~~~~l~D~~--~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~ 126 (140)
T cd03017 75 -AEKY---GLPFPLLSDPD--GKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVW 126 (140)
T ss_pred -HHHh---CCCceEEECCc--cHHHHHhCCccccccccCCcceeEEEECCCCEEEEEE
Confidence 3332 23455566764 468889999988 9999999999998754
No 30
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.44 E-value=2.4e-13 Score=124.74 Aligned_cols=108 Identities=17% Similarity=0.142 Sum_probs=71.9
Q ss_pred CCCcccC--CCCC--eEecccc-CCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCc
Q 014387 44 LLPLVDG--ATKT--RVNLEVL-RRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWT 116 (425)
Q Consensus 44 ~~pl~dg--~~g~--~V~ls~L-kGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~ 116 (425)
+.|.|.. .+|+ .++++.+ +||+|+|+|||+|||+|+.++ |.++++ ++++|+.|+..+ .
T Consensus 39 ~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~----------~~~~vi~V~~~~-----~ 103 (173)
T TIGR00385 39 PVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK----------DGLPIVGVDYKD-----Q 103 (173)
T ss_pred CCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH----------cCCEEEEEECCC-----C
Confidence 3454443 3454 5555665 799999999999999999988 665542 158999998521 1
Q ss_pred hHHHHHHHHHHhCCCceeeccCcccChHHHHHHHHhCCCCCCCeEEEECCCCcEEcc
Q 014387 117 DNKQKQFQSLQSAMPWYTVYHPSLIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVCP 173 (425)
Q Consensus 117 D~~~~~F~~~~~~mPW~aV~~p~l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~~ 173 (425)
..+..+|-+- ..+||..+ +.|+. ..+.+.|++.++|++++||++|+|+..
T Consensus 104 ~~~~~~~~~~-~~~~f~~v----~~D~~--~~~~~~~~v~~~P~~~~id~~G~i~~~ 153 (173)
T TIGR00385 104 SQNALKFLKE-LGNPYQAI----LIDPN--GKLGLDLGVYGAPETFLVDGNGVILYR 153 (173)
T ss_pred hHHHHHHHHH-cCCCCceE----EECCC--CchHHhcCCeeCCeEEEEcCCceEEEE
Confidence 1222233221 23444322 23543 367889999999999999999999865
No 31
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.44 E-value=3.9e-13 Score=123.02 Aligned_cols=115 Identities=19% Similarity=0.128 Sum_probs=85.2
Q ss_pred CCCCCCccc--CCCCCeEeccccCCCEEEEEEecCC-ChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCC
Q 014387 41 KDDLLPLVD--GATKTRVNLEVLRRKMVLLLISDLD-ISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPW 115 (425)
Q Consensus 41 k~~~~pl~d--g~~g~~V~ls~LkGK~VlL~FsAsW-C~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w 115 (425)
.++.+|.|. +.+|+.+++++++||+|+|+|||+| ||+|..++ |+++|++++ +++||.||. |
T Consensus 20 ~G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--------~~~vv~vs~-D----- 85 (167)
T PRK00522 20 VGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--------NTVVLCISA-D----- 85 (167)
T ss_pred CCCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--------CcEEEEEeC-C-----
Confidence 455666554 4678899999999999999999999 99999999 999888862 589999985 2
Q ss_pred chHHHHHHHHHHhCCCceeeccCcccChHHHHHHHHhCCCCCCC---------eEEEECCCCcEEcccc
Q 014387 116 TDNKQKQFQSLQSAMPWYTVYHPSLIDRAVIQFIKEEWQFGKKP---------ILVVLDPHGKVVCPNA 175 (425)
Q Consensus 116 ~D~~~~~F~~~~~~mPW~aV~~p~l~D~~~~~~L~~~f~v~~iP---------tlVvLD~~GkVv~~na 175 (425)
.....++|.+-. .++ .+|.+.|.. .+.+.+.|++...| +++|||++|+|+....
T Consensus 86 ~~~~~~~f~~~~-~~~----~~~~lsD~~-~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~ 148 (167)
T PRK00522 86 LPFAQKRFCGAE-GLE----NVITLSDFR-DHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSEL 148 (167)
T ss_pred CHHHHHHHHHhC-CCC----CceEeecCC-ccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEE
Confidence 223445554421 222 134455632 23678899998877 9999999999987664
No 32
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.44 E-value=3e-13 Score=125.97 Aligned_cols=100 Identities=12% Similarity=0.086 Sum_probs=77.6
Q ss_pred CCCcccCCCCCeEeccccCCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHH
Q 014387 44 LLPLVDGATKTRVNLEVLRRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQK 121 (425)
Q Consensus 44 ~~pl~dg~~g~~V~ls~LkGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~ 121 (425)
++|.|.-.+|+.+++++++ +|+|||+|||||+.++ |+++++++ +++|+.|++ | .+.
T Consensus 54 ~~~~f~l~dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~---------g~~Vi~Vs~-D-------~~~- 111 (181)
T PRK13728 54 APRWFRLSNGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY---------GFSVFPYTL-D-------GQG- 111 (181)
T ss_pred CCCccCCCCCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHc---------CCEEEEEEe-C-------CCC-
Confidence 3567777899999999998 7779999999999999 99999987 389999996 2 111
Q ss_pred HHHHHHhCCCceeeccCcccC-hHHHHHHHHhCCC--CCCCeEEEECCCCcEEccccchhh
Q 014387 122 QFQSLQSAMPWYTVYHPSLID-RAVIQFIKEEWQF--GKKPILVVLDPHGKVVCPNALHMM 179 (425)
Q Consensus 122 ~F~~~~~~mPW~aV~~p~l~D-~~~~~~L~~~f~v--~~iPtlVvLD~~GkVv~~na~~~I 179 (425)
...||.+.| .. ..+.+.|++ .++|+++|||++|+++-+-.+..+
T Consensus 112 ------------~~~fPv~~dd~~--~~~~~~~g~~~~~iPttfLId~~G~i~~~~~~G~~ 158 (181)
T PRK13728 112 ------------DTAFPEALPAPP--DVMQTFFPNIPVATPTTFLVNVNTLEALPLLQGAT 158 (181)
T ss_pred ------------CCCCceEecCch--hHHHHHhCCCCCCCCeEEEEeCCCcEEEEEEECCC
Confidence 136777664 32 356778995 699999999999999755444444
No 33
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.42 E-value=6.1e-13 Score=117.19 Aligned_cols=114 Identities=15% Similarity=0.066 Sum_probs=81.7
Q ss_pred CCCCCcc--cCCCCCeEeccccCCCEEEEEEecCC-ChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCc
Q 014387 42 DDLLPLV--DGATKTRVNLEVLRRKMVLLLISDLD-ISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWT 116 (425)
Q Consensus 42 ~~~~pl~--dg~~g~~V~ls~LkGK~VlL~FsAsW-C~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~ 116 (425)
++.+|.| ...+|+.+++++++||+|+|+||++| ||+|+.++ |.++|++++ +++||.|++ | .
T Consensus 3 G~~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--------~~~vi~Is~-d-----~ 68 (143)
T cd03014 3 GDKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--------NTVVLTISA-D-----L 68 (143)
T ss_pred CCCCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--------CCEEEEEEC-C-----C
Confidence 4455644 44678899999999999999999999 69999999 999998862 589999985 2 2
Q ss_pred hHHHHHHHHHHhCCCceeeccCcccChHHHHHHHHhCCCCC------CCeEEEECCCCcEEcccc
Q 014387 117 DNKQKQFQSLQSAMPWYTVYHPSLIDRAVIQFIKEEWQFGK------KPILVVLDPHGKVVCPNA 175 (425)
Q Consensus 117 D~~~~~F~~~~~~mPW~aV~~p~l~D~~~~~~L~~~f~v~~------iPtlVvLD~~GkVv~~na 175 (425)
....++|.+ .+... +||.+.|.. ...+.+.|++.. .|+++|||++|+|+...-
T Consensus 69 ~~~~~~~~~---~~~~~--~~~~l~D~~-~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~ 127 (143)
T cd03014 69 PFAQKRWCG---AEGVD--NVTTLSDFR-DHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVEL 127 (143)
T ss_pred HHHHHHHHH---hcCCC--CceEeecCc-ccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEEE
Confidence 233344533 22211 334444542 146777888853 799999999999987543
No 34
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.42 E-value=8.9e-13 Score=123.50 Aligned_cols=107 Identities=12% Similarity=0.096 Sum_probs=84.8
Q ss_pred CCCeEeccccCCCEEEEEEe-cCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHh
Q 014387 52 TKTRVNLEVLRRKMVLLLIS-DLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQS 128 (425)
Q Consensus 52 ~g~~V~ls~LkGK~VlL~Fs-AsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~ 128 (425)
+...+++++++||.|+|+|| +.|||+|..++ |.+.|+++++ .+++|+.||. | +-...++|.+-..
T Consensus 20 ~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~------~g~~vigIS~-D-----~~~~~~a~~~~~~ 87 (187)
T PRK10382 20 EFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQK------LGVDVYSVST-D-----THFTHKAWHSSSE 87 (187)
T ss_pred cceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHh------CCCEEEEEeC-C-----CHHHHHHHHHhhc
Confidence 45678889999999999999 99999999999 9999999964 3799999995 2 2334566654322
Q ss_pred CCCceeeccCcccChHHHHHHHHhCCC----CCC--CeEEEECCCCcEEccc
Q 014387 129 AMPWYTVYHPSLIDRAVIQFIKEEWQF----GKK--PILVVLDPHGKVVCPN 174 (425)
Q Consensus 129 ~mPW~aV~~p~l~D~~~~~~L~~~f~v----~~i--PtlVvLD~~GkVv~~n 174 (425)
.+ ..++||.+.|+. ..+.+.|++ .++ |+++|||++|+|+...
T Consensus 88 ~~--~~l~fpllsD~~--~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~ 135 (187)
T PRK10382 88 TI--AKIKYAMIGDPT--GALTRNFDNMREDEGLADRATFVVDPQGIIQAIE 135 (187)
T ss_pred cc--cCCceeEEEcCc--hHHHHHcCCCcccCCceeeEEEEECCCCEEEEEE
Confidence 22 356788888863 689999998 367 9999999999998753
No 35
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.41 E-value=1.1e-12 Score=117.38 Aligned_cols=112 Identities=18% Similarity=0.213 Sum_probs=80.9
Q ss_pred CCCCCcc--cCCCCCeEeccccCCCEEEEEEecC-CChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCc
Q 014387 42 DDLLPLV--DGATKTRVNLEVLRRKMVLLLISDL-DISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWT 116 (425)
Q Consensus 42 ~~~~pl~--dg~~g~~V~ls~LkGK~VlL~FsAs-WC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~ 116 (425)
+++.|.| .+.+|+.+++++++||+++|+||++ |||.|+..+ |.++++++++ ++++||.|++ | +
T Consensus 7 g~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~------~~v~vi~Is~-d-----~ 74 (154)
T PRK09437 7 GDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKK------AGVVVLGIST-D-----K 74 (154)
T ss_pred CCcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHH------CCCEEEEEcC-C-----C
Confidence 3445544 3567899999999999999999997 577899988 9999999974 3699999985 2 2
Q ss_pred hHHHHHHHHHHhCCCceeeccCcccChHHHHHHHHhCCCCCC------------CeEEEECCCCcEEcc
Q 014387 117 DNKQKQFQSLQSAMPWYTVYHPSLIDRAVIQFIKEEWQFGKK------------PILVVLDPHGKVVCP 173 (425)
Q Consensus 117 D~~~~~F~~~~~~mPW~aV~~p~l~D~~~~~~L~~~f~v~~i------------PtlVvLD~~GkVv~~ 173 (425)
.+...+|.+- ... +||.+.|.. ..+.+.|++..+ |+++|||++|+|+..
T Consensus 75 ~~~~~~~~~~-~~~-----~~~~l~D~~--~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 135 (154)
T PRK09437 75 PEKLSRFAEK-ELL-----NFTLLSDED--HQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHV 135 (154)
T ss_pred HHHHHHHHHH-hCC-----CCeEEECCC--chHHHHhCCCcccccccccccCcceEEEEECCCCEEEEE
Confidence 3333344221 123 344455543 467788888654 778999999999865
No 36
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.41 E-value=1.4e-12 Score=115.23 Aligned_cols=116 Identities=16% Similarity=0.098 Sum_probs=82.4
Q ss_pred CCCCCcc--cCCCCCeEeccccCC-CEEEEEEe-cCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCC
Q 014387 42 DDLLPLV--DGATKTRVNLEVLRR-KMVLLLIS-DLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPW 115 (425)
Q Consensus 42 ~~~~pl~--dg~~g~~V~ls~LkG-K~VlL~Fs-AsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w 115 (425)
++..|.| .+.+|+.+++++++| |+++|+|| |+||++|...+ |.++|+++++ +++.||.|+. |
T Consensus 4 G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~------~~v~vi~vs~-d----- 71 (149)
T cd03018 4 GDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEA------AGAEVLGISV-D----- 71 (149)
T ss_pred CCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHh------CCCEEEEecC-C-----
Confidence 3444543 446799999999999 99888887 99999999988 9999999964 3689999984 2
Q ss_pred chHHHHHHHHHHhCCCceeeccCcccChHHHHHHHHhCCCC----CCC--eEEEECCCCcEEcccc
Q 014387 116 TDNKQKQFQSLQSAMPWYTVYHPSLIDRAVIQFIKEEWQFG----KKP--ILVVLDPHGKVVCPNA 175 (425)
Q Consensus 116 ~D~~~~~F~~~~~~mPW~aV~~p~l~D~~~~~~L~~~f~v~----~iP--tlVvLD~~GkVv~~na 175 (425)
.....++|.+. ... +||.+.|......+.+.|++. ++| +++|||++|+|+....
T Consensus 72 ~~~~~~~~~~~-~~~-----~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~ 131 (149)
T cd03018 72 SPFSLRAWAEE-NGL-----TFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWV 131 (149)
T ss_pred CHHHHHHHHHh-cCC-----CceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEEe
Confidence 22233444332 123 445455643124677888887 444 8999999999987644
No 37
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.40 E-value=1.6e-12 Score=113.27 Aligned_cols=109 Identities=17% Similarity=0.190 Sum_probs=81.8
Q ss_pred ccCCCCCeEeccccCCCEEEEEEe-cCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHH
Q 014387 48 VDGATKTRVNLEVLRRKMVLLLIS-DLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQ 124 (425)
Q Consensus 48 ~dg~~g~~V~ls~LkGK~VlL~Fs-AsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~ 124 (425)
+.+.+|+.+++++++||+++|+|| ++||++|...+ |.++|+++++ .+++||.|+. | +....++|
T Consensus 7 l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~------~~~~~i~is~-d-----~~~~~~~~- 73 (140)
T cd02971 7 LPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAK------GGAEVLGVSV-D-----SPFSHKAW- 73 (140)
T ss_pred eccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH------CCCEEEEEeC-C-----CHHHHHHH-
Confidence 345678999999999999999999 78999999999 9999999964 3699999985 2 12223334
Q ss_pred HHHhCCCceeeccCcccChHHHHHHHHhCCCCCCC---------eEEEECCCCcEEcccc
Q 014387 125 SLQSAMPWYTVYHPSLIDRAVIQFIKEEWQFGKKP---------ILVVLDPHGKVVCPNA 175 (425)
Q Consensus 125 ~~~~~mPW~aV~~p~l~D~~~~~~L~~~f~v~~iP---------tlVvLD~~GkVv~~na 175 (425)
.+.++ ..+||.+.|.. ..+.+.|++...| +.+|||++|+|+...-
T Consensus 74 --~~~~~--~~~~~~l~D~~--~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~ 127 (140)
T cd02971 74 --AEKEG--GLNFPLLSDPD--GEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEV 127 (140)
T ss_pred --Hhccc--CCCceEEECCC--hHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEe
Confidence 33331 22445555654 3788899988766 8999999999987643
No 38
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.39 E-value=2.2e-12 Score=113.14 Aligned_cols=105 Identities=17% Similarity=0.228 Sum_probs=77.2
Q ss_pred cCCCCCeEeccccC-CC-EEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHH
Q 014387 49 DGATKTRVNLEVLR-RK-MVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQ 124 (425)
Q Consensus 49 dg~~g~~V~ls~Lk-GK-~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~ 124 (425)
...+|+.+++++++ +| +|+++||++|||+|+.++ |.++|+++++ .+++||.|+. | .......|
T Consensus 8 ~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~------~~v~vv~V~~-~-----~~~~~~~~- 74 (149)
T cd02970 8 PDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDA------LGVELVAVGP-E-----SPEKLEAF- 74 (149)
T ss_pred cCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHh------cCeEEEEEeC-C-----CHHHHHHH-
Confidence 34568899999875 34 666666899999999999 9999999964 3699999985 2 12222223
Q ss_pred HHHhCCCceeeccCcccChHHHHHHHHhCCCC-----------------------------CCCeEEEECCCCcEEcc
Q 014387 125 SLQSAMPWYTVYHPSLIDRAVIQFIKEEWQFG-----------------------------KKPILVVLDPHGKVVCP 173 (425)
Q Consensus 125 ~~~~~mPW~aV~~p~l~D~~~~~~L~~~f~v~-----------------------------~iPtlVvLD~~GkVv~~ 173 (425)
.... .++||.+.|+. ..+.+.|++. .+|.++|||++|+|+..
T Consensus 75 --~~~~---~~~~p~~~D~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~ 145 (149)
T cd02970 75 --DKGK---FLPFPVYADPD--RKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFA 145 (149)
T ss_pred --HHhc---CCCCeEEECCc--hhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEE
Confidence 2222 24667777864 4688889984 79999999999999754
No 39
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.37 E-value=2.2e-12 Score=110.38 Aligned_cols=99 Identities=21% Similarity=0.304 Sum_probs=72.1
Q ss_pred cCCCCCeEeccccCCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHH
Q 014387 49 DGATKTRVNLEVLRRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSL 126 (425)
Q Consensus 49 dg~~g~~V~ls~LkGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~ 126 (425)
...+|+.++++.++||+++|+|||+||++|+..+ |.+++++ ++++.|+..+ .+.+...++
T Consensus 6 ~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-----------~~~i~i~~~~-------~~~~~~~~~ 67 (123)
T cd03011 6 TTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-----------YPVVSVALRS-------GDDGAVARF 67 (123)
T ss_pred ecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-----------CCEEEEEccC-------CCHHHHHHH
Confidence 3456789999999999999999999999999998 8888754 4578887521 122333333
Q ss_pred HhCCCceeeccCcccChHHHHHHHHhCCCCCCCeEEEECCCCcEE
Q 014387 127 QSAMPWYTVYHPSLIDRAVIQFIKEEWQFGKKPILVVLDPHGKVV 171 (425)
Q Consensus 127 ~~~mPW~aV~~p~l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv 171 (425)
.++. .++||.+.|.. ..+.+.|++.++|+++|+|++| ++
T Consensus 68 ~~~~---~~~~~~~~d~~--~~~~~~~~i~~~P~~~vid~~g-i~ 106 (123)
T cd03011 68 MQKK---GYGFPVINDPD--GVISARWGVSVTPAIVIVDPGG-IV 106 (123)
T ss_pred HHHc---CCCccEEECCC--cHHHHhCCCCcccEEEEEcCCC-eE
Confidence 3322 23455444543 4688899999999999999999 54
No 40
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.36 E-value=2.9e-12 Score=121.02 Aligned_cols=116 Identities=15% Similarity=0.160 Sum_probs=84.5
Q ss_pred CCCCCcccC--CCCCeEeccccCCCEEEE-EEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCc
Q 014387 42 DDLLPLVDG--ATKTRVNLEVLRRKMVLL-LISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWT 116 (425)
Q Consensus 42 ~~~~pl~dg--~~g~~V~ls~LkGK~VlL-~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~ 116 (425)
++.+|.|.. ..| .+++++++||.|+| +|||+|||+|..++ |.++|+++++ .+++||.||+ | +
T Consensus 5 G~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~------~~~~vi~vS~-D-----~ 71 (202)
T PRK13190 5 GQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKK------LGVELVGLSV-D-----S 71 (202)
T ss_pred CCCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHH------CCCEEEEEeC-C-----C
Confidence 445666554 334 79999999997666 69999999999999 9999999974 3799999995 2 1
Q ss_pred hHHHHHHH-HHHhCCCceeeccCcccChHHHHHHHHhCCCC------CCCeEEEECCCCcEEcc
Q 014387 117 DNKQKQFQ-SLQSAMPWYTVYHPSLIDRAVIQFIKEEWQFG------KKPILVVLDPHGKVVCP 173 (425)
Q Consensus 117 D~~~~~F~-~~~~~mPW~aV~~p~l~D~~~~~~L~~~f~v~------~iPtlVvLD~~GkVv~~ 173 (425)
......|. .+..... +.++||.+.|.. +.+.+.|++. .+|.++||||+|+|...
T Consensus 72 ~~~~~~w~~~~~~~~g-~~~~fPll~D~~--~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~ 132 (202)
T PRK13190 72 IYSHIAWLRDIEERFG-IKIPFPVIADID--KELAREYNLIDENSGATVRGVFIIDPNQIVRWM 132 (202)
T ss_pred HHHHHHHHHhHHHhcC-CCceEEEEECCC--hHHHHHcCCccccCCcEEeEEEEECCCCEEEEE
Confidence 22333442 2222221 125678788864 5788999984 58999999999999743
No 41
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.34 E-value=2.1e-12 Score=120.75 Aligned_cols=103 Identities=17% Similarity=0.239 Sum_probs=73.7
Q ss_pred CCCeEeccccCCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEE------EEEeccCCCCCCchHHHHHH
Q 014387 52 TKTRVNLEVLRRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEV------VWLPIVDPNMPWTDNKQKQF 123 (425)
Q Consensus 52 ~g~~V~ls~LkGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEI------V~IsIvd~s~~w~D~~~~~F 123 (425)
+.+.++.++|+||+++|+|||+||+||+.+. |.++ ++ ++|.+ +.|+..|. -.....|
T Consensus 48 ~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l----~~------~~~~~~~y~~t~~IN~dd~-----~~~~~~f 112 (184)
T TIGR01626 48 VYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAI----KA------AKFPPVKYQTTTIINADDA-----IVGTGMF 112 (184)
T ss_pred cceeccHHHcCCCEEEEEEEecCCChhhccchHHHHH----HH------cCCCcccccceEEEECccc-----hhhHHHH
Confidence 4567888999999999999999999999999 6666 32 25778 88885221 0112233
Q ss_pred -H----HHHhCCCceeeccCcccChHHHHHHHHhCCCCCCCeE-EEECCCCcEEcccc
Q 014387 124 -Q----SLQSAMPWYTVYHPSLIDRAVIQFIKEEWQFGKKPIL-VVLDPHGKVVCPNA 175 (425)
Q Consensus 124 -~----~~~~~mPW~aV~~p~l~D~~~~~~L~~~f~v~~iPtl-VvLD~~GkVv~~na 175 (425)
+ +.....||.. .+.|..+ .+...|++.++|++ +|||++|+|+....
T Consensus 113 Vk~fie~~~~~~P~~~----vllD~~g--~v~~~~gv~~~P~T~fVIDk~GkVv~~~~ 164 (184)
T TIGR01626 113 VKSSAKKGKKENPWSQ----VVLDDKG--AVKNAWQLNSEDSAIIVLDKTGKVKFVKE 164 (184)
T ss_pred HHHHHHHhcccCCcce----EEECCcc--hHHHhcCCCCCCceEEEECCCCcEEEEEe
Confidence 2 2234556542 4467643 56789999999998 89999999986544
No 42
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.33 E-value=6e-12 Score=120.32 Aligned_cols=118 Identities=10% Similarity=0.073 Sum_probs=89.0
Q ss_pred CCCCCccc--CCCCCeEeccccCCCE-EEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCc
Q 014387 42 DDLLPLVD--GATKTRVNLEVLRRKM-VLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWT 116 (425)
Q Consensus 42 ~~~~pl~d--g~~g~~V~ls~LkGK~-VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~ 116 (425)
++..|.|. .++|+.+.+++++||. |+++|||+|||+|..++ |.++|+++++ .+++||.||+ | +
T Consensus 5 Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~------~gv~vigIS~-D-----~ 72 (215)
T PRK13599 5 GEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKE------LNTELIGLSV-D-----Q 72 (215)
T ss_pred CCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH------CCCEEEEEeC-C-----C
Confidence 45566554 3568777778999996 57899999999999999 9999999975 3699999995 2 2
Q ss_pred hHHHHHHHHHHhCCCceeeccCcccChHHHHHHHHhCCCC-------CCCeEEEECCCCcEEcc
Q 014387 117 DNKQKQFQSLQSAMPWYTVYHPSLIDRAVIQFIKEEWQFG-------KKPILVVLDPHGKVVCP 173 (425)
Q Consensus 117 D~~~~~F~~~~~~mPW~aV~~p~l~D~~~~~~L~~~f~v~-------~iPtlVvLD~~GkVv~~ 173 (425)
......|.++.++.-=+.++||.+.|.. +.+.+.|++. .+|+++|||++|+|...
T Consensus 73 ~~~~~~w~~~i~~~~~~~i~fPil~D~~--~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~ 134 (215)
T PRK13599 73 VFSHIKWVEWIKDNTNIAIPFPVIADDL--GKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLI 134 (215)
T ss_pred HHHHHHHHHhHHHhcCCCCceeEEECCC--chHHHHcCCCccCCCCceeeEEEEECCCCEEEEE
Confidence 3345566554332211356888888864 4788899973 68999999999999865
No 43
>PRK15000 peroxidase; Provisional
Probab=99.30 E-value=1.4e-11 Score=116.33 Aligned_cols=104 Identities=14% Similarity=0.113 Sum_probs=77.5
Q ss_pred Eecccc-CCCEEEEEEecC-CChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHH-HHhCC
Q 014387 56 VNLEVL-RRKMVLLLISDL-DISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQS-LQSAM 130 (425)
Q Consensus 56 V~ls~L-kGK~VlL~FsAs-WC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~-~~~~m 130 (425)
.+++++ +||+|+|+||+. ||++|..++ |.+.|+++++ .+++|+.||. | +....+.|.+ +.+..
T Consensus 26 ~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~------~g~~vigvS~-D-----~~~~~~~w~~~~~~~~ 93 (200)
T PRK15000 26 FNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQK------RGVEVVGVSF-D-----SEFVHNAWRNTPVDKG 93 (200)
T ss_pred eeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH------CCCEEEEEEC-C-----CHHHHHHHHhhHHHhC
Confidence 344444 899999999996 899999999 9999999975 3799999995 2 2333455543 22221
Q ss_pred CceeeccCcccChHHHHHHHHhCCCC------CCCeEEEECCCCcEEcc
Q 014387 131 PWYTVYHPSLIDRAVIQFIKEEWQFG------KKPILVVLDPHGKVVCP 173 (425)
Q Consensus 131 PW~aV~~p~l~D~~~~~~L~~~f~v~------~iPtlVvLD~~GkVv~~ 173 (425)
-=..++||.+.|+. +.+.+.|++. .+|.++||||+|+|...
T Consensus 94 g~~~i~fpllsD~~--~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~ 140 (200)
T PRK15000 94 GIGPVKYAMVADVK--REIQKAYGIEHPDEGVALRGSFLIDANGIVRHQ 140 (200)
T ss_pred CccccCceEEECCC--cHHHHHcCCccCCCCcEEeEEEEECCCCEEEEE
Confidence 10135777777764 5788999997 69999999999999874
No 44
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.29 E-value=1.7e-11 Score=115.20 Aligned_cols=117 Identities=16% Similarity=0.154 Sum_probs=85.6
Q ss_pred CCCCCccc------CCCCCeEeccccCCCEEEEEEec-CCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCC
Q 014387 42 DDLLPLVD------GATKTRVNLEVLRRKMVLLLISD-LDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPN 112 (425)
Q Consensus 42 ~~~~pl~d------g~~g~~V~ls~LkGK~VlL~FsA-sWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s 112 (425)
++++|.|. +.+|+.+++++++||+|+|+||+ .||+.|..++ |.++++++++ .+++||.||. |
T Consensus 9 G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~------~g~~vv~IS~-d-- 79 (199)
T PTZ00253 9 NHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNE------LNCEVLACSM-D-- 79 (199)
T ss_pred CCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHH------cCCEEEEEeC-C--
Confidence 45566665 34568999999999999999996 6799999999 9999999965 3799999995 2
Q ss_pred CCCchHHHHHHHH-HHhCCCceeeccCcccChHHHHHHHHhCCCC------CCCeEEEECCCCcEEc
Q 014387 113 MPWTDNKQKQFQS-LQSAMPWYTVYHPSLIDRAVIQFIKEEWQFG------KKPILVVLDPHGKVVC 172 (425)
Q Consensus 113 ~~w~D~~~~~F~~-~~~~mPW~aV~~p~l~D~~~~~~L~~~f~v~------~iPtlVvLD~~GkVv~ 172 (425)
+......|.. .....-.-.++||.+.|. .+.+.+.|++. ..|.++|||++|+|+.
T Consensus 80 ---~~~~~~~~~~~~~~~~~~~~~~fpll~D~--~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~ 141 (199)
T PTZ00253 80 ---SEYAHLQWTLQERKKGGLGTMAIPMLADK--TKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQ 141 (199)
T ss_pred ---CHHHHHHHHhChHhhCCccccccceEECc--HhHHHHHcCCcccCCCceEEEEEEECCCCEEEE
Confidence 1222333321 111111113678888886 36888999985 3689999999999876
No 45
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.29 E-value=1.6e-11 Score=120.61 Aligned_cols=120 Identities=14% Similarity=0.118 Sum_probs=87.7
Q ss_pred CCCCCCcccC---CCC--CeEecccc-CCCEEEEEEe-cCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCC
Q 014387 41 KDDLLPLVDG---ATK--TRVNLEVL-RRKMVLLLIS-DLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDP 111 (425)
Q Consensus 41 k~~~~pl~dg---~~g--~~V~ls~L-kGK~VlL~Fs-AsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~ 111 (425)
.++..|.|.. .+| +.++++++ +||.|+|+|+ |.|||+|..++ |.+.|+++++ .+++|+.||+ |
T Consensus 70 vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~------~gv~VigIS~-D- 141 (261)
T PTZ00137 70 VGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEE------RGVKVLGVSV-D- 141 (261)
T ss_pred CCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH------CCCEEEEEEC-C-
Confidence 3455666553 123 46899998 8988777777 89999999999 9999999975 3799999996 2
Q ss_pred CCCCchHHHHHHHHH-HhCCCceeeccCcccChHHHHHHHHhCCCC-----CCCeEEEECCCCcEEccc
Q 014387 112 NMPWTDNKQKQFQSL-QSAMPWYTVYHPSLIDRAVIQFIKEEWQFG-----KKPILVVLDPHGKVVCPN 174 (425)
Q Consensus 112 s~~w~D~~~~~F~~~-~~~mPW~aV~~p~l~D~~~~~~L~~~f~v~-----~iPtlVvLD~~GkVv~~n 174 (425)
+....+.|.+. ..+.--..++||.+.|.. ..+.+.|++. .+|+++|||++|+|+...
T Consensus 142 ----s~~~h~aw~~~~~~~~g~~~l~fPlLsD~~--~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~ 204 (261)
T PTZ00137 142 ----SPFSHKAWKELDVRQGGVSPLKFPLFSDIS--REVSKSFGLLRDEGFSHRASVLVDKAGVVKHVA 204 (261)
T ss_pred ----CHHHHHHHHhhhhhhccccCcceEEEEcCC--hHHHHHcCCCCcCCceecEEEEECCCCEEEEEE
Confidence 12244556542 222222356778788864 5789999985 589999999999998644
No 46
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.29 E-value=1.2e-11 Score=112.46 Aligned_cols=86 Identities=9% Similarity=0.121 Sum_probs=59.1
Q ss_pred CCeEeccccCCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCC
Q 014387 53 KTRVNLEVLRRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAM 130 (425)
Q Consensus 53 g~~V~ls~LkGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~m 130 (425)
|++++++++ ++|+|||+||+||+.++ |+++|+++ +++|+.|++.+ ...+ +.
T Consensus 44 G~~~~l~~~----~lvnFWAsWCppCr~e~P~L~~l~~~~---------~~~Vi~Vs~d~-------~~~~-------~f 96 (153)
T TIGR02738 44 GRHANQDDY----ALVFFYQSTCPYCHQFAPVLKRFSQQF---------GLPVYAFSLDG-------QGLT-------GF 96 (153)
T ss_pred chhhhcCCC----EEEEEECCCChhHHHHHHHHHHHHHHc---------CCcEEEEEeCC-------Cccc-------cc
Confidence 556665544 59999999999999999 99999876 37899998621 1111 11
Q ss_pred CceeeccCcccChHHHHHHHHhC---CCCCCCeEEEECCCCcEEcc
Q 014387 131 PWYTVYHPSLIDRAVIQFIKEEW---QFGKKPILVVLDPHGKVVCP 173 (425)
Q Consensus 131 PW~aV~~p~l~D~~~~~~L~~~f---~v~~iPtlVvLD~~GkVv~~ 173 (425)
| +.++. +. ..+...| ++.++|++++||++|+++..
T Consensus 97 p---~~~~~--~~---~~~~~~~~~~~v~~iPTt~LID~~G~~i~~ 134 (153)
T TIGR02738 97 P---DPLPA--TP---EVMQTFFPNPRPVVTPATFLVNVNTRKAYP 134 (153)
T ss_pred c---cccCC--ch---HHHHHHhccCCCCCCCeEEEEeCCCCEEEE
Confidence 2 22211 11 2234455 88999999999999987654
No 47
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.26 E-value=2.9e-11 Score=114.17 Aligned_cols=115 Identities=10% Similarity=0.128 Sum_probs=84.2
Q ss_pred CCCCcccC--CCCCeEeccccCC-C-EEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCc
Q 014387 43 DLLPLVDG--ATKTRVNLEVLRR-K-MVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWT 116 (425)
Q Consensus 43 ~~~pl~dg--~~g~~V~ls~LkG-K-~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~ 116 (425)
+.+|.|.. ++| .+++++++| | +|+++|||+|||.|..++ |.++|+++++ .+++|+.||+ | .
T Consensus 3 ~~aP~F~~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~------~gv~vigvS~-D-----~ 69 (203)
T cd03016 3 DTAPNFEADTTHG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKK------RNVKLIGLSV-D-----S 69 (203)
T ss_pred CCCCCeEEecCCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHH------cCCEEEEEEC-C-----C
Confidence 44555443 345 689999999 6 456699999999999999 9999999974 3699999996 2 2
Q ss_pred hHHHHHHHH-HHhCCCceeeccCcccChHHHHHHHHhCCCC----C----CCeEEEECCCCcEEcc
Q 014387 117 DNKQKQFQS-LQSAMPWYTVYHPSLIDRAVIQFIKEEWQFG----K----KPILVVLDPHGKVVCP 173 (425)
Q Consensus 117 D~~~~~F~~-~~~~mPW~aV~~p~l~D~~~~~~L~~~f~v~----~----iPtlVvLD~~GkVv~~ 173 (425)
.....+|.+ ....+. ..++||.+.|+. ..+.+.|++. + +|.++|||++|+|...
T Consensus 70 ~~~~~~~~~~i~~~~~-~~~~fpil~D~~--~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~ 132 (203)
T cd03016 70 VESHIKWIEDIEEYTG-VEIPFPIIADPD--REVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLI 132 (203)
T ss_pred HHHHHHHHhhHHHhcC-CCCceeEEECch--HHHHHHcCCccccCCCCceeeEEEEECCCCeEEEE
Confidence 333444543 222233 567888888874 5788899975 3 3569999999999754
No 48
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.26 E-value=2.4e-11 Score=116.09 Aligned_cols=117 Identities=12% Similarity=0.126 Sum_probs=84.8
Q ss_pred CCCCCcccC--CCCCeEec-cccCCCEEEE-EEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCC
Q 014387 42 DDLLPLVDG--ATKTRVNL-EVLRRKMVLL-LISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPW 115 (425)
Q Consensus 42 ~~~~pl~dg--~~g~~V~l-s~LkGK~VlL-~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w 115 (425)
++.+|.|.. .+|+ +.+ +.++||.|+| +|||+||++|..++ |.+.|+++++ .+++|+.||+ |
T Consensus 10 G~~aPdF~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~------~g~~VigvS~-D----- 76 (215)
T PRK13191 10 GEKFPEMEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKK------LNTELIGLSV-D----- 76 (215)
T ss_pred CCcCCCCEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH------CCCEEEEEEC-C-----
Confidence 555676643 4564 666 5589996554 89999999999999 9999999975 3699999995 3
Q ss_pred chHHHHHHHHHHhCCCceeeccCcccChHHHHHHHHhCCCC-------CCCeEEEECCCCcEEcc
Q 014387 116 TDNKQKQFQSLQSAMPWYTVYHPSLIDRAVIQFIKEEWQFG-------KKPILVVLDPHGKVVCP 173 (425)
Q Consensus 116 ~D~~~~~F~~~~~~mPW~aV~~p~l~D~~~~~~L~~~f~v~-------~iPtlVvLD~~GkVv~~ 173 (425)
+......|.+...+.-=+.++||.+.|.. ..+.+.|++. .+|.++|||++|+|...
T Consensus 77 s~~~h~aw~~~~~~~~~~~i~fPllsD~~--~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~ 139 (215)
T PRK13191 77 SNISHIEWVMWIEKNLKVEVPFPIIADPM--GNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLI 139 (215)
T ss_pred CHHHHHHHHhhHHHhcCCCCceEEEECCc--hHHHHHcCCcccccCCceeEEEEEECCCCEEEEE
Confidence 23444556543321101246788888864 5788899973 37999999999999864
No 49
>PRK13189 peroxiredoxin; Provisional
Probab=99.23 E-value=4.9e-11 Score=114.47 Aligned_cols=116 Identities=16% Similarity=0.209 Sum_probs=82.9
Q ss_pred CCCCCcccC--CCCCeEeccc-cCCC-EEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCC
Q 014387 42 DDLLPLVDG--ATKTRVNLEV-LRRK-MVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPW 115 (425)
Q Consensus 42 ~~~~pl~dg--~~g~~V~ls~-LkGK-~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w 115 (425)
++.+|.|.. ..| .+++++ ++|| +|+++|||+|||+|..++ |.+.|+++++ .+++|+.||+ |
T Consensus 12 G~~aPdF~~~~~~g-~~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~------~~v~VigvS~-D----- 78 (222)
T PRK13189 12 GDKFPEFEVKTTHG-PIKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRE------LNTELIGLSI-D----- 78 (222)
T ss_pred CCcCCCcEeEcCCC-CEeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHH------cCCEEEEEEC-C-----
Confidence 455665543 445 477765 6999 556688999999999999 9999999974 3799999996 2
Q ss_pred chHHHHHHHH-HHhCCCceeeccCcccChHHHHHHHHhCCCC-------CCCeEEEECCCCcEEcc
Q 014387 116 TDNKQKQFQS-LQSAMPWYTVYHPSLIDRAVIQFIKEEWQFG-------KKPILVVLDPHGKVVCP 173 (425)
Q Consensus 116 ~D~~~~~F~~-~~~~mPW~aV~~p~l~D~~~~~~L~~~f~v~-------~iPtlVvLD~~GkVv~~ 173 (425)
+.....+|.+ +..... ..++||.+.|.. +.+.+.|++. .+|.++||||+|+|...
T Consensus 79 ~~~~h~aw~~~~~~~~g-~~i~fPllsD~~--~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~ 141 (222)
T PRK13189 79 QVFSHIKWVEWIKEKLG-VEIEFPIIADDR--GEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAI 141 (222)
T ss_pred CHHHHHHHHHhHHHhcC-cCcceeEEEcCc--cHHHHHhCCCccccCCCceeEEEEECCCCeEEEE
Confidence 2333445543 222211 135778777764 5788899975 57999999999999654
No 50
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.22 E-value=5.3e-11 Score=111.25 Aligned_cols=54 Identities=13% Similarity=0.109 Sum_probs=47.7
Q ss_pred cCCCCCeEeccccCCCEEEEEEecCCChHhHHHH-HHHHHHHHHhhhccCCCceEEEEEec
Q 014387 49 DGATKTRVNLEVLRRKMVLLLISDLDISQEEVII-LEQLYSEARQHQTRHESQYEVVWLPI 108 (425)
Q Consensus 49 dg~~g~~V~ls~LkGK~VlL~FsAsWC~pCr~~~-L~~iY~~~k~~~~k~~~~fEIV~IsI 108 (425)
.+.+|+.+++++++||+|+|.|||+||++|...- |+++|+++++ ++++||.||.
T Consensus 11 ~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~q~~~L~~L~~~y~~------~gl~Vlg~p~ 65 (183)
T PRK10606 11 TTIDGEVTTLEKYAGNVLLIVNVASKCGLTPQYEQLENIQKAWAD------QGFVVLGFPC 65 (183)
T ss_pred ECCCCCEEeHHHhCCCEEEEEEEeCCCCCcHHHHHHHHHHHHHhh------CCeEEEEeec
Confidence 4567889999999999999999999999997544 9999999964 4799999996
No 51
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.13 E-value=2e-10 Score=102.74 Aligned_cols=74 Identities=19% Similarity=0.200 Sum_probs=58.5
Q ss_pred cCCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccC
Q 014387 61 LRRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHP 138 (425)
Q Consensus 61 LkGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p 138 (425)
-+||+|+|+|||+||++|+.+. |.++++++++ .+.|+.|.+ |... |
T Consensus 18 ~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~-------~~~~v~v~v--------d~~~-----------~------ 65 (142)
T cd02950 18 SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD-------QVNFVMLNV--------DNPK-----------W------ 65 (142)
T ss_pred hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc-------CeeEEEEEc--------CCcc-----------c------
Confidence 4789999999999999999998 9999988842 478888875 2110 0
Q ss_pred cccChHHHHHHHHhCCCCCCCeEEEECCCCcEEccc
Q 014387 139 SLIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVCPN 174 (425)
Q Consensus 139 ~l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~~n 174 (425)
..+.+.|++.++|+++++|++|+++...
T Consensus 66 --------~~~~~~~~V~~iPt~v~~~~~G~~v~~~ 93 (142)
T cd02950 66 --------LPEIDRYRVDGIPHFVFLDREGNEEGQS 93 (142)
T ss_pred --------HHHHHHcCCCCCCEEEEECCCCCEEEEE
Confidence 1244679999999999999999998643
No 52
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.05 E-value=1.6e-10 Score=114.23 Aligned_cols=93 Identities=14% Similarity=0.152 Sum_probs=68.9
Q ss_pred CCeEeccccCCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCC
Q 014387 53 KTRVNLEVLRRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAM 130 (425)
Q Consensus 53 g~~V~ls~LkGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~m 130 (425)
++...+++|+||+++++|||+||++|+.++ |.++++++ +++|+.|++ | .... ..
T Consensus 156 ~~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y---------g~~Vi~Vsv-D-------~~~~------~~- 211 (271)
T TIGR02740 156 QKDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRY---------GIEVLPVSV-D-------GGPL------PG- 211 (271)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHc---------CcEEEEEeC-C-------CCcc------cc-
Confidence 445788999999999999999999999998 99998886 388999996 2 1110 01
Q ss_pred CceeeccCcccChHHHHHHHHhCCCCCCCeEEEECCCCcEEccccchh
Q 014387 131 PWYTVYHPSLIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVCPNALHM 178 (425)
Q Consensus 131 PW~aV~~p~l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~~na~~~ 178 (425)
||.+.+. ..+.+.|+|.++|+++++|++|+.+...+.+.
T Consensus 212 ------fp~~~~d---~~la~~~gV~~vPtl~Lv~~~~~~v~~v~~G~ 250 (271)
T TIGR02740 212 ------FPNARPD---AGQAQQLKIRTVPAVFLADPDPNQFTPIGFGV 250 (271)
T ss_pred ------CCcccCC---HHHHHHcCCCcCCeEEEEECCCCEEEEEEeCC
Confidence 3332121 24678999999999999999766555544443
No 53
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.04 E-value=7.8e-10 Score=93.16 Aligned_cols=72 Identities=10% Similarity=0.084 Sum_probs=53.2
Q ss_pred ccCCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeecc
Q 014387 60 VLRRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYH 137 (425)
Q Consensus 60 ~LkGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~ 137 (425)
..+||+|+|+|||+||+||+.++ |.++.+++. ++.++-|.+ |++.
T Consensus 12 ~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~--------~v~~~~vd~--------d~~~----------------- 58 (103)
T cd02985 12 KAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN--------DVVFLLVNG--------DEND----------------- 58 (103)
T ss_pred HcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC--------CCEEEEEEC--------CCCh-----------------
Confidence 34699999999999999999988 888887761 355666653 2211
Q ss_pred CcccChHHHHHHHHhCCCCCCCeEEEECCCCcEEc
Q 014387 138 PSLIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVC 172 (425)
Q Consensus 138 p~l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~ 172 (425)
....+.+.|+|+++||++++ ++|+++.
T Consensus 59 -------~~~~l~~~~~V~~~Pt~~~~-~~G~~v~ 85 (103)
T cd02985 59 -------STMELCRREKIIEVPHFLFY-KDGEKIH 85 (103)
T ss_pred -------HHHHHHHHcCCCcCCEEEEE-eCCeEEE
Confidence 01246678999999997777 8998864
No 54
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=5.6e-09 Score=95.34 Aligned_cols=112 Identities=21% Similarity=0.196 Sum_probs=87.0
Q ss_pred CCCCCCcc--cCCCCCeEeccccCCCEEEEEEecC-CChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCC
Q 014387 41 KDDLLPLV--DGATKTRVNLEVLRRKMVLLLISDL-DISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPW 115 (425)
Q Consensus 41 k~~~~pl~--dg~~g~~V~ls~LkGK~VlL~FsAs-WC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w 115 (425)
.+++.|.| -+.+|+.|+|++++||.|+|||.-- +.|.|-.+. +.+.|.+++. -+.+|+.||. |
T Consensus 6 ~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~------~~a~V~GIS~-D----- 73 (157)
T COG1225 6 VGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEK------LGAVVLGISP-D----- 73 (157)
T ss_pred CCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHh------CCCEEEEEeC-C-----
Confidence 35556654 4577889999999999988888865 689999999 9999999974 3799999995 3
Q ss_pred chHHHHHHHHHHhCCCceeeccCcccChHHHHHHHHhCCCC------------CCCeEEEECCCCcEEc
Q 014387 116 TDNKQKQFQSLQSAMPWYTVYHPSLIDRAVIQFIKEEWQFG------------KKPILVVLDPHGKVVC 172 (425)
Q Consensus 116 ~D~~~~~F~~~~~~mPW~aV~~p~l~D~~~~~~L~~~f~v~------------~iPtlVvLD~~GkVv~ 172 (425)
+-...+.|.+- +.++||-+.|.. +.+.+.|++- ..++++|||++|+|+.
T Consensus 74 s~~~~~~F~~k------~~L~f~LLSD~~--~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~ 134 (157)
T COG1225 74 SPKSHKKFAEK------HGLTFPLLSDED--GEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRY 134 (157)
T ss_pred CHHHHHHHHHH------hCCCceeeECCc--HHHHHHhCcccccccCccccccccceEEEECCCCeEEE
Confidence 35566777552 456677777775 4688888873 3689999999999975
No 55
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.90 E-value=3e-09 Score=91.96 Aligned_cols=83 Identities=20% Similarity=0.315 Sum_probs=57.9
Q ss_pred CC-CEEEEEEecCCChHhHHHH--H---HHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceee
Q 014387 62 RR-KMVLLLISDLDISQEEVII--L---EQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTV 135 (425)
Q Consensus 62 kG-K~VlL~FsAsWC~pCr~~~--L---~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV 135 (425)
.| |+|+|+|||+||++|+... + ..+.+.+++ +|.++.|.+.+ +.....|
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~d~------~~~~~~~------------ 66 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA-------HFVVVYINIDG------DKEVTDF------------ 66 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh-------heEEEEEEccC------Cceeecc------------
Confidence 46 8999999999999999987 4 356666642 57888887521 1111111
Q ss_pred ccCcccChHHHHHHHHhCCCCCCCeEEEECCC-CcEEcc
Q 014387 136 YHPSLIDRAVIQFIKEEWQFGKKPILVVLDPH-GKVVCP 173 (425)
Q Consensus 136 ~~p~l~D~~~~~~L~~~f~v~~iPtlVvLD~~-GkVv~~ 173 (425)
+... ...+.+...|++.++|+++++|++ |+++.+
T Consensus 67 --~~~~--~~~~~l~~~~~v~~~Pt~~~~~~~gg~~~~~ 101 (125)
T cd02951 67 --DGEA--LSEKELARKYRVRFTPTVIFLDPEGGKEIAR 101 (125)
T ss_pred --CCCC--ccHHHHHHHcCCccccEEEEEcCCCCceeEE
Confidence 1100 123578899999999999999999 898754
No 56
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.90 E-value=3.8e-09 Score=88.86 Aligned_cols=67 Identities=9% Similarity=0.032 Sum_probs=50.9
Q ss_pred cccCCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeec
Q 014387 59 EVLRRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVY 136 (425)
Q Consensus 59 s~LkGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~ 136 (425)
+.++||+|+|+|||+||+||+..+ |.++.++++ ++.++.|.. +. .
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~--------~~~~~~vd~--------~~-----------------~ 60 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFP--------QIRHLAIEE--------SS-----------------I 60 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc--------cCceEEEEC--------CC-----------------C
Confidence 358999999999999999999998 999888873 244554431 10 1
Q ss_pred cCcccChHHHHHHHHhCCCCCCCeEEEECCC
Q 014387 137 HPSLIDRAVIQFIKEEWQFGKKPILVVLDPH 167 (425)
Q Consensus 137 ~p~l~D~~~~~~L~~~f~v~~iPtlVvLD~~ 167 (425)
+ ..+.+.|++.++||++++++.
T Consensus 61 ~---------~~l~~~~~V~~~PT~~lf~~g 82 (100)
T cd02999 61 K---------PSLLSRYGVVGFPTILLFNST 82 (100)
T ss_pred C---------HHHHHhcCCeecCEEEEEcCC
Confidence 1 146678999999999999754
No 57
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.87 E-value=1.1e-08 Score=85.45 Aligned_cols=73 Identities=8% Similarity=0.022 Sum_probs=53.8
Q ss_pred CCCEEEEEEecCCChHhHHHH--H---HHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeec
Q 014387 62 RRKMVLLLISDLDISQEEVII--L---EQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVY 136 (425)
Q Consensus 62 kGK~VlL~FsAsWC~pCr~~~--L---~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~ 136 (425)
.||+|+|+|||+||++|+.+. + .++.+.+++ ++.++.|.+ +.+.
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-------~~~~~~vd~--------~~~~---------------- 58 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-------DVVLLRADW--------TKND---------------- 58 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-------CeEEEEEec--------CCCC----------------
Confidence 579999999999999999987 3 467776631 566776653 1110
Q ss_pred cCcccChHHHHHHHHhCCCCCCCeEEEECC-CCcEEc
Q 014387 137 HPSLIDRAVIQFIKEEWQFGKKPILVVLDP-HGKVVC 172 (425)
Q Consensus 137 ~p~l~D~~~~~~L~~~f~v~~iPtlVvLD~-~GkVv~ 172 (425)
.....+.+.|++.++|+++++++ +|+++.
T Consensus 59 -------~~~~~~~~~~~i~~~Pti~~~~~~~g~~~~ 88 (104)
T cd02953 59 -------PEITALLKRFGVFGPPTYLFYGPGGEPEPL 88 (104)
T ss_pred -------HHHHHHHHHcCCCCCCEEEEECCCCCCCCc
Confidence 11235667899999999999999 898764
No 58
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.85 E-value=1.2e-08 Score=83.77 Aligned_cols=68 Identities=16% Similarity=0.207 Sum_probs=52.0
Q ss_pred CCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCc
Q 014387 62 RRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPS 139 (425)
Q Consensus 62 kGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~ 139 (425)
+||+|+|+|||+||+||+... |.++++.+++ .+.++-|.+ |..
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~-------~~~~~~vd~--------~~~-------------------- 55 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG-------QFVLAKVNC--------DAQ-------------------- 55 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC-------cEEEEEEec--------cCC--------------------
Confidence 578999999999999999988 8888888732 354555542 110
Q ss_pred ccChHHHHHHHHhCCCCCCCeEEEECCCCcEEc
Q 014387 140 LIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVC 172 (425)
Q Consensus 140 l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~ 172 (425)
..+.+.|++.++|++++++ +|+++.
T Consensus 56 -------~~l~~~~~i~~~Pt~~~~~-~g~~~~ 80 (96)
T cd02956 56 -------PQIAQQFGVQALPTVYLFA-AGQPVD 80 (96)
T ss_pred -------HHHHHHcCCCCCCEEEEEe-CCEEee
Confidence 2466789999999999997 898763
No 59
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.80 E-value=2.5e-08 Score=83.73 Aligned_cols=68 Identities=7% Similarity=0.120 Sum_probs=50.4
Q ss_pred CCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCc
Q 014387 62 RRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPS 139 (425)
Q Consensus 62 kGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~ 139 (425)
.|++|+|+|||+||+||+..+ |.++++++++ ..+.++-|.+ | .
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~------~~~~~~~vd~--------d-~-------------------- 60 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGD------DLLHFATAEA--------D-T-------------------- 60 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCC------CcEEEEEEeC--------C-C--------------------
Confidence 478999999999999999988 8888888742 2345555542 2 1
Q ss_pred ccChHHHHHHHHhCCCCCCCeEEEECCCCcEEc
Q 014387 140 LIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVC 172 (425)
Q Consensus 140 l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~ 172 (425)
..+.+.|+++++|+++++ ++|+++.
T Consensus 61 -------~~~~~~~~v~~~Pt~~~~-~~g~~~~ 85 (102)
T cd02948 61 -------IDTLKRYRGKCEPTFLFY-KNGELVA 85 (102)
T ss_pred -------HHHHHHcCCCcCcEEEEE-ECCEEEE
Confidence 023468999999998877 5888764
No 60
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.76 E-value=4.4e-08 Score=82.44 Aligned_cols=92 Identities=14% Similarity=0.170 Sum_probs=54.7
Q ss_pred CCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCc
Q 014387 62 RRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPS 139 (425)
Q Consensus 62 kGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~ 139 (425)
+||.++++|++.|||.|+.+. |.+..+ +.. ..+.++.++.+.+. .+.+ ....-....-+ +.+.
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~----~~~~ 68 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDND-VAR---YLKDDFQVIFVNID------DSRD-ESEAVLDFDGQ----KNVR 68 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHH-HHC---EEHCECEEEECESH------SHHH-HHHHHHSHTCH----SSCH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHH-HHH---HhhcCeEEEEEecC------Cccc-ccccccccccc----hhhh
Confidence 589999999999999999876 444332 321 11236888888862 1221 22211110000 1111
Q ss_pred ccChHHHHHHHHhCCCCCCCeEEEECCCCcEEc
Q 014387 140 LIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVC 172 (425)
Q Consensus 140 l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~ 172 (425)
.....+.+.|++.+.|+++++|++|+++.
T Consensus 69 ----~~~~~l~~~~~v~gtPt~~~~d~~G~~v~ 97 (112)
T PF13098_consen 69 ----LSNKELAQRYGVNGTPTIVFLDKDGKIVY 97 (112)
T ss_dssp ----HHHHHHHHHTT--SSSEEEECTTTSCEEE
T ss_pred ----HHHHHHHHHcCCCccCEEEEEcCCCCEEE
Confidence 23357899999999999999999999874
No 61
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.71 E-value=6e-08 Score=82.84 Aligned_cols=72 Identities=13% Similarity=0.016 Sum_probs=54.9
Q ss_pred ccCCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeecc
Q 014387 60 VLRRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYH 137 (425)
Q Consensus 60 ~LkGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~ 137 (425)
..+||+|+|+|||+||++|+... +.++.+++++ .++.|.-|.+ |..
T Consensus 21 ~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~------~~v~~~~vd~--------d~~------------------ 68 (111)
T cd02963 21 KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEP------LGVGIATVNA--------GHE------------------ 68 (111)
T ss_pred ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHh------cCceEEEEec--------ccc------------------
Confidence 34789999999999999999988 8899998853 2455665542 211
Q ss_pred CcccChHHHHHHHHhCCCCCCCeEEEECCCCcEEcc
Q 014387 138 PSLIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVCP 173 (425)
Q Consensus 138 p~l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~~ 173 (425)
..+.+.|+++++|+++++. +|+++..
T Consensus 69 ---------~~l~~~~~V~~~Pt~~i~~-~g~~~~~ 94 (111)
T cd02963 69 ---------RRLARKLGAHSVPAIVGII-NGQVTFY 94 (111)
T ss_pred ---------HHHHHHcCCccCCEEEEEE-CCEEEEE
Confidence 1356789999999999994 8887654
No 62
>PHA02278 thioredoxin-like protein
Probab=98.69 E-value=5.3e-08 Score=82.89 Aligned_cols=73 Identities=15% Similarity=0.300 Sum_probs=51.7
Q ss_pred CCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCc
Q 014387 62 RRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPS 139 (425)
Q Consensus 62 kGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~ 139 (425)
+++.|+|+|||+||+||+... |.++.+++. .+..++.|.+ |.+.
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~-------~~~~~~~vdv--------d~~~------------------- 58 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGD-------IKKPILTLNL--------DAED------------------- 58 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhc-------CCceEEEEEC--------Cccc-------------------
Confidence 678999999999999999877 777665542 1356777765 2110
Q ss_pred ccChHHHHHHHHhCCCCCCCeEEEECCCCcEEcc
Q 014387 140 LIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVCP 173 (425)
Q Consensus 140 l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~~ 173 (425)
.| ...+.+.|+|+++||++++. +|+.+.+
T Consensus 59 -~d---~~~l~~~~~I~~iPT~i~fk-~G~~v~~ 87 (103)
T PHA02278 59 -VD---REKAVKLFDIMSTPVLIGYK-DGQLVKK 87 (103)
T ss_pred -cc---cHHHHHHCCCccccEEEEEE-CCEEEEE
Confidence 01 12467889999999999985 5777643
No 63
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.68 E-value=4e-08 Score=85.23 Aligned_cols=73 Identities=18% Similarity=0.211 Sum_probs=47.4
Q ss_pred ccCCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeecc
Q 014387 60 VLRRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYH 137 (425)
Q Consensus 60 ~LkGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~ 137 (425)
.-+||+|+|+|||+||+||+... +.+....... +..+|.|.+ |.+.+.
T Consensus 16 ~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-------~~~fv~v~v--------d~~~~~--------------- 65 (117)
T cd02959 16 KDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL-------SHNFVMVNL--------EDDEEP--------------- 65 (117)
T ss_pred HHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-------cCcEEEEEe--------cCCCCc---------------
Confidence 34689999999999999999887 5554333211 224555554 111000
Q ss_pred CcccChHHHHHHHHhCCCCC--CCeEEEECCCCcEEcc
Q 014387 138 PSLIDRAVIQFIKEEWQFGK--KPILVVLDPHGKVVCP 173 (425)
Q Consensus 138 p~l~D~~~~~~L~~~f~v~~--iPtlVvLD~~GkVv~~ 173 (425)
+.+.|++.+ +|+++++|++|+++.+
T Consensus 66 -----------~~~~~~~~g~~vPt~~f~~~~Gk~~~~ 92 (117)
T cd02959 66 -----------KDEEFSPDGGYIPRILFLDPSGDVHPE 92 (117)
T ss_pred -----------hhhhcccCCCccceEEEECCCCCCchh
Confidence 112455554 9999999999999864
No 64
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=98.65 E-value=4.4e-07 Score=83.89 Aligned_cols=115 Identities=17% Similarity=0.287 Sum_probs=80.6
Q ss_pred cccCCCCCeEeccccCCCEEEEEEecCCCh-HhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHH
Q 014387 47 LVDGATKTRVNLEVLRRKMVLLLISDLDIS-QEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQF 123 (425)
Q Consensus 47 l~dg~~g~~V~ls~LkGK~VlL~FsAsWC~-pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F 123 (425)
.+.+.+|+.+++++++||+++|+|.-+-|| .|-..+ |.++.+++.+ + +.++++|+||+ |+..+ +-+..++|
T Consensus 36 ~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~---~-~~~v~~v~ISv-DP~~D-Tp~~L~~Y 109 (174)
T PF02630_consen 36 TLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGE---E-GKDVQFVFISV-DPERD-TPEVLKKY 109 (174)
T ss_dssp EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHH---T-TTTEEEEEEES-STTTC--HHHHHHH
T ss_pred EEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhh---c-cCceEEEEEEe-CCCCC-CHHHHHHH
Confidence 455678999999999999999999999995 488777 9999999976 3 56899999997 53211 12334444
Q ss_pred HHHHhCCCceeeccCcccChHHHHHHHHhCCCC----------------CCCeEEEECCCCcEEc
Q 014387 124 QSLQSAMPWYTVYHPSLIDRAVIQFIKEEWQFG----------------KKPILVVLDPHGKVVC 172 (425)
Q Consensus 124 ~~~~~~mPW~aV~~p~l~D~~~~~~L~~~f~v~----------------~iPtlVvLD~~GkVv~ 172 (425)
.+.+ .-.|..+.+ +.+.++.+.+.|++. .-..++||||+|+++.
T Consensus 110 ~~~~-~~~~~~ltg----~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~ 169 (174)
T PF02630_consen 110 AKKF-GPDFIGLTG----SREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRA 169 (174)
T ss_dssp HHCH-TTTCEEEEE----EHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEE
T ss_pred HHhc-CCCcceeEe----CHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEE
Confidence 4433 234666654 344566777777753 2347889999999875
No 65
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.64 E-value=9.4e-08 Score=83.07 Aligned_cols=69 Identities=10% Similarity=0.052 Sum_probs=51.1
Q ss_pred CCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCc
Q 014387 62 RRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPS 139 (425)
Q Consensus 62 kGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~ 139 (425)
.+++|+|+|||+||+||+... |.++-+++.+ ...++-|.+ |+.
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~-------~v~f~kVDv--------D~~-------------------- 57 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN-------FAVIYLVDI--------DEV-------------------- 57 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccC-------ceEEEEEEC--------CCC--------------------
Confidence 467999999999999999765 7777766632 355666653 211
Q ss_pred ccChHHHHHHHHhCCCCCCCeEEEECCCCcEEcc
Q 014387 140 LIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVCP 173 (425)
Q Consensus 140 l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~~ 173 (425)
..+.+.|+|.++||++++. +|+.+..
T Consensus 58 -------~~la~~~~V~~iPTf~~fk-~G~~v~~ 83 (114)
T cd02954 58 -------PDFNKMYELYDPPTVMFFF-RNKHMKI 83 (114)
T ss_pred -------HHHHHHcCCCCCCEEEEEE-CCEEEEE
Confidence 1466789999999999995 7888754
No 66
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.62 E-value=1.9e-07 Score=82.21 Aligned_cols=79 Identities=14% Similarity=0.092 Sum_probs=52.5
Q ss_pred CCCEEEEEEecCCChHhHHHH-----HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeec
Q 014387 62 RRKMVLLLISDLDISQEEVII-----LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVY 136 (425)
Q Consensus 62 kGK~VlL~FsAsWC~pCr~~~-----L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~ 136 (425)
+||.|+|+|+|.||++|+..- -.++.+.+. ++|..|-|.. ++..+ ...
T Consensus 14 ~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~-------~~fv~VkvD~--------~~~~~-~~~----------- 66 (124)
T cd02955 14 EDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILN-------ENFVPIKVDR--------EERPD-VDK----------- 66 (124)
T ss_pred cCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHh-------CCEEEEEEeC--------CcCcH-HHH-----------
Confidence 589999999999999999753 234555553 2465555542 11111 100
Q ss_pred cCcccChHHHHHHHHhCCCCCCCeEEEECCCCcEEccc
Q 014387 137 HPSLIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVCPN 174 (425)
Q Consensus 137 ~p~l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~~n 174 (425)
.........|++.|.|+++++||+|++++..
T Consensus 67 -------~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 67 -------IYMNAAQAMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred -------HHHHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence 0112334478999999999999999999765
No 67
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.62 E-value=9.2e-08 Score=83.70 Aligned_cols=80 Identities=11% Similarity=0.160 Sum_probs=58.5
Q ss_pred CCCEEEEEEec-------CCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCc
Q 014387 62 RRKMVLLLISD-------LDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPW 132 (425)
Q Consensus 62 kGK~VlL~FsA-------sWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW 132 (425)
+||.|+|+||| +||+||+... |.++.+++++ +..++-|.+ | +.. -|
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~-------~v~fv~Vdv-d-------~~~----------~w 74 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE-------DCVFIYCDV-G-------DRP----------YW 74 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC-------CCEEEEEEc-C-------Ccc----------cc
Confidence 68899999999 9999999887 8888888732 467777764 2 111 02
Q ss_pred eeeccCcccChHHHHHHHHhCCCC-CCCeEEEECCCCcEEccccc
Q 014387 133 YTVYHPSLIDRAVIQFIKEEWQFG-KKPILVVLDPHGKVVCPNAL 176 (425)
Q Consensus 133 ~aV~~p~l~D~~~~~~L~~~f~v~-~iPtlVvLD~~GkVv~~na~ 176 (425)
. |+ ...++..|++. ++||+++++..++++..+..
T Consensus 75 ~--------d~--~~~~~~~~~I~~~iPT~~~~~~~~~l~~~~c~ 109 (119)
T cd02952 75 R--------DP--NNPFRTDPKLTTGVPTLLRWKTPQRLVEDECL 109 (119)
T ss_pred c--------Cc--chhhHhccCcccCCCEEEEEcCCceecchhhc
Confidence 1 11 12466789998 99999999888888776644
No 68
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.60 E-value=2e-07 Score=78.10 Aligned_cols=65 Identities=14% Similarity=0.076 Sum_probs=47.1
Q ss_pred CCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCc
Q 014387 62 RRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPS 139 (425)
Q Consensus 62 kGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~ 139 (425)
+++.|+|+|||+||++|+... |.++++++++ + +.++.+.-+.+ +. +
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~---~-~~~~~~~~vd~--------~~------------------~-- 61 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKS---S-GSPVRVGKLDA--------TA------------------Y-- 61 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHh---c-CCcEEEEEEEC--------cc------------------C--
Confidence 567999999999999999988 9999998854 1 12333333331 11 1
Q ss_pred ccChHHHHHHHHhCCCCCCCeEEEEC
Q 014387 140 LIDRAVIQFIKEEWQFGKKPILVVLD 165 (425)
Q Consensus 140 l~D~~~~~~L~~~f~v~~iPtlVvLD 165 (425)
..+.+.|+++++|++++++
T Consensus 62 -------~~~~~~~~I~~~Pt~~l~~ 80 (104)
T cd03000 62 -------SSIASEFGVRGYPTIKLLK 80 (104)
T ss_pred -------HhHHhhcCCccccEEEEEc
Confidence 1356689999999999994
No 69
>PRK09381 trxA thioredoxin; Provisional
Probab=98.59 E-value=1.8e-07 Score=78.74 Aligned_cols=67 Identities=18% Similarity=0.219 Sum_probs=52.0
Q ss_pred CCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCcc
Q 014387 63 RKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPSL 140 (425)
Q Consensus 63 GK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~l 140 (425)
++.|+|+|||+|||+|+... |.++.+++++ ++.+..|.+ |..
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~-------~~~~~~vd~--------~~~--------------------- 64 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQG-------KLTVAKLNI--------DQN--------------------- 64 (109)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC-------CcEEEEEEC--------CCC---------------------
Confidence 78999999999999999998 9999998842 466666653 211
Q ss_pred cChHHHHHHHHhCCCCCCCeEEEECCCCcEEc
Q 014387 141 IDRAVIQFIKEEWQFGKKPILVVLDPHGKVVC 172 (425)
Q Consensus 141 ~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~ 172 (425)
..+.+.|+++++|+++++ ++|+++.
T Consensus 65 ------~~~~~~~~v~~~Pt~~~~-~~G~~~~ 89 (109)
T PRK09381 65 ------PGTAPKYGIRGIPTLLLF-KNGEVAA 89 (109)
T ss_pred ------hhHHHhCCCCcCCEEEEE-eCCeEEE
Confidence 123467899999999999 6898764
No 70
>PRK10996 thioredoxin 2; Provisional
Probab=98.59 E-value=1.7e-07 Score=83.46 Aligned_cols=69 Identities=12% Similarity=0.147 Sum_probs=51.8
Q ss_pred CCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCc
Q 014387 62 RRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPS 139 (425)
Q Consensus 62 kGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~ 139 (425)
.+|.|+|+|||+||++|+.+. |.++++++++ ++.++-|.+ |.
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~-------~v~~~~vd~--------~~--------------------- 94 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG-------KVRFVKVNT--------EA--------------------- 94 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC-------CeEEEEEeC--------CC---------------------
Confidence 589999999999999999987 8888887632 445544432 11
Q ss_pred ccChHHHHHHHHhCCCCCCCeEEEECCCCcEEcc
Q 014387 140 LIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVCP 173 (425)
Q Consensus 140 l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~~ 173 (425)
+ ..+.+.|++.++|++++++ +|+++..
T Consensus 95 --~----~~l~~~~~V~~~Ptlii~~-~G~~v~~ 121 (139)
T PRK10996 95 --E----RELSARFRIRSIPTIMIFK-NGQVVDM 121 (139)
T ss_pred --C----HHHHHhcCCCccCEEEEEE-CCEEEEE
Confidence 0 1456789999999998885 8998753
No 71
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.58 E-value=1.3e-07 Score=78.64 Aligned_cols=68 Identities=10% Similarity=0.074 Sum_probs=50.6
Q ss_pred cCCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccC
Q 014387 61 LRRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHP 138 (425)
Q Consensus 61 LkGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p 138 (425)
.++++|+|+|||+||++|+... +.++.+++++ .+.+.-|.+ |..
T Consensus 16 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~-------~~~~~~vd~--------~~~------------------- 61 (101)
T cd03003 16 NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG-------VIRIGAVNC--------GDD------------------- 61 (101)
T ss_pred cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC-------ceEEEEEeC--------Ccc-------------------
Confidence 4568999999999999999987 8888887742 355555553 211
Q ss_pred cccChHHHHHHHHhCCCCCCCeEEEECCCCcEE
Q 014387 139 SLIDRAVIQFIKEEWQFGKKPILVVLDPHGKVV 171 (425)
Q Consensus 139 ~l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv 171 (425)
..+.+.|+++++|+++++ ++|+.+
T Consensus 62 --------~~~~~~~~v~~~Pt~~~~-~~g~~~ 85 (101)
T cd03003 62 --------RMLCRSQGVNSYPSLYVF-PSGMNP 85 (101)
T ss_pred --------HHHHHHcCCCccCEEEEE-cCCCCc
Confidence 135567899999999999 688753
No 72
>PTZ00051 thioredoxin; Provisional
Probab=98.55 E-value=1.7e-07 Score=77.00 Aligned_cols=68 Identities=19% Similarity=0.258 Sum_probs=48.7
Q ss_pred CCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCc
Q 014387 62 RRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPS 139 (425)
Q Consensus 62 kGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~ 139 (425)
.++.|+|+|||+||++|+.+. |.++.+++. + +.++.+ | .+.
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~--------~--~~~~~v-d-----~~~--------------------- 59 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYT--------K--MVFVKV-D-----VDE--------------------- 59 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC--------C--cEEEEE-E-----Ccc---------------------
Confidence 368999999999999999987 777776541 2 444443 1 111
Q ss_pred ccChHHHHHHHHhCCCCCCCeEEEECCCCcEEcc
Q 014387 140 LIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVCP 173 (425)
Q Consensus 140 l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~~ 173 (425)
...+.+.|++.++|+++++ ++|+++..
T Consensus 60 ------~~~~~~~~~v~~~Pt~~~~-~~g~~~~~ 86 (98)
T PTZ00051 60 ------LSEVAEKENITSMPTFKVF-KNGSVVDT 86 (98)
T ss_pred ------hHHHHHHCCCceeeEEEEE-eCCeEEEE
Confidence 0245678999999998777 79988743
No 73
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.54 E-value=2.7e-07 Score=77.07 Aligned_cols=68 Identities=13% Similarity=0.055 Sum_probs=52.0
Q ss_pred CCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCc
Q 014387 62 RRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPS 139 (425)
Q Consensus 62 kGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~ 139 (425)
.|++|+|+|||+||++|+.+. +.++.++++. .+.++.|.+ |.+.
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~-------~~~~~~v~~--------~~~~------------------- 62 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG-------LVQVAAVDC--------DEDK------------------- 62 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC-------CceEEEEec--------Cccc-------------------
Confidence 478899999999999999987 8888877742 467777764 2110
Q ss_pred ccChHHHHHHHHhCCCCCCCeEEEECCCCc
Q 014387 140 LIDRAVIQFIKEEWQFGKKPILVVLDPHGK 169 (425)
Q Consensus 140 l~D~~~~~~L~~~f~v~~iPtlVvLD~~Gk 169 (425)
...+.+.|+++++|+++++++.|+
T Consensus 63 ------~~~~~~~~~i~~~Pt~~~~~~~~~ 86 (109)
T cd03002 63 ------NKPLCGKYGVQGFPTLKVFRPPKK 86 (109)
T ss_pred ------cHHHHHHcCCCcCCEEEEEeCCCc
Confidence 124567899999999999998874
No 74
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.53 E-value=2.6e-07 Score=76.01 Aligned_cols=67 Identities=13% Similarity=0.133 Sum_probs=49.2
Q ss_pred EEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCcccC
Q 014387 65 MVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPSLID 142 (425)
Q Consensus 65 ~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~l~D 142 (425)
.|+|+|||+||++|+.+. +.+++++++. ...++.++.|.. +. +
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~----~~~~~~~~~vd~--------~~-----------------------~ 62 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNN----ENPSVKIAKVDC--------TQ-----------------------H 62 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhc----cCCcEEEEEEEC--------CC-----------------------C
Confidence 499999999999999988 9999999853 122455655542 11 0
Q ss_pred hHHHHHHHHhCCCCCCCeEEEECCCCcEE
Q 014387 143 RAVIQFIKEEWQFGKKPILVVLDPHGKVV 171 (425)
Q Consensus 143 ~~~~~~L~~~f~v~~iPtlVvLD~~GkVv 171 (425)
..+.+.|++.++|+++++ ++|+.+
T Consensus 63 ----~~~~~~~~v~~~Pt~~~~-~~g~~~ 86 (102)
T cd03005 63 ----RELCSEFQVRGYPTLLLF-KDGEKV 86 (102)
T ss_pred ----hhhHhhcCCCcCCEEEEE-eCCCee
Confidence 134567899999999999 677754
No 75
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.52 E-value=4.1e-07 Score=77.14 Aligned_cols=69 Identities=20% Similarity=0.275 Sum_probs=51.0
Q ss_pred CCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCc
Q 014387 62 RRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPS 139 (425)
Q Consensus 62 kGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~ 139 (425)
+||+|+|+|||+||++|+... +.++.+++++ .++.+.-|.+ |.+..
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~------~~~~~~~vd~--------d~~~~------------------ 67 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAG------SNVKVAKFNA--------DGEQR------------------ 67 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhcc------CCeEEEEEEC--------Cccch------------------
Confidence 579999999999999999988 8888888842 2577776653 22100
Q ss_pred ccChHHHHHHHHhCCCCCCCeEEEECCCCc
Q 014387 140 LIDRAVIQFIKEEWQFGKKPILVVLDPHGK 169 (425)
Q Consensus 140 l~D~~~~~~L~~~f~v~~iPtlVvLD~~Gk 169 (425)
....+.|+++++|+++++++.|+
T Consensus 68 -------~~~~~~~~v~~~Pti~~f~~~~~ 90 (109)
T cd02993 68 -------EFAKEELQLKSFPTILFFPKNSR 90 (109)
T ss_pred -------hhHHhhcCCCcCCEEEEEcCCCC
Confidence 11234589999999999988764
No 76
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.51 E-value=5.4e-07 Score=73.72 Aligned_cols=70 Identities=13% Similarity=0.090 Sum_probs=52.1
Q ss_pred CCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCc
Q 014387 62 RRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPS 139 (425)
Q Consensus 62 kGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~ 139 (425)
++++++|+|||+||++|+.+. |.++.+.++. +.++.++.+.+ |..
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~-----~~~~~~~~~d~--------~~~-------------------- 58 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKG-----DPDIVLAKVDA--------TAE-------------------- 58 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhcc-----CCceEEEEEEc--------cch--------------------
Confidence 789999999999999999987 8888877742 22455554442 111
Q ss_pred ccChHHHHHHHHhCCCCCCCeEEEECCCCcEE
Q 014387 140 LIDRAVIQFIKEEWQFGKKPILVVLDPHGKVV 171 (425)
Q Consensus 140 l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv 171 (425)
..+.+.|++.++|+++++++.+.++
T Consensus 59 -------~~~~~~~~i~~~P~~~~~~~~~~~~ 83 (102)
T TIGR01126 59 -------KDLASRFGVSGFPTIKFFPKGKKPV 83 (102)
T ss_pred -------HHHHHhCCCCcCCEEEEecCCCcce
Confidence 2455779999999999999888643
No 77
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.49 E-value=5.3e-07 Score=74.68 Aligned_cols=68 Identities=18% Similarity=0.214 Sum_probs=51.4
Q ss_pred CCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCc
Q 014387 62 RRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPS 139 (425)
Q Consensus 62 kGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~ 139 (425)
.+|+|+++|||+||++|+... |.++.+++++ ++.++.|.+ |.+
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-------~v~~~~id~--------d~~-------------------- 56 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-------AVHFVEIDI--------DED-------------------- 56 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-------ceEEEEEEC--------CCC--------------------
Confidence 468999999999999999988 8888887732 455555542 111
Q ss_pred ccChHHHHHHHHhCCCCCCCeEEEECCCCcEEc
Q 014387 140 LIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVC 172 (425)
Q Consensus 140 l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~ 172 (425)
..+.+.|++.++|++++++ +|+++.
T Consensus 57 -------~~l~~~~~v~~vPt~~i~~-~g~~v~ 81 (97)
T cd02949 57 -------QEIAEAAGIMGTPTVQFFK-DKELVK 81 (97)
T ss_pred -------HHHHHHCCCeeccEEEEEE-CCeEEE
Confidence 1355678999999999995 788873
No 78
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.47 E-value=6.5e-07 Score=74.13 Aligned_cols=67 Identities=7% Similarity=0.021 Sum_probs=47.0
Q ss_pred cCCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccC
Q 014387 61 LRRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHP 138 (425)
Q Consensus 61 LkGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p 138 (425)
++|+ ++|+|||+||+||+.+. +.++.+.++. .++.+.-|.. +..
T Consensus 15 ~~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~------~~v~~~~vd~--------~~~------------------- 60 (101)
T cd02994 15 LEGE-WMIEFYAPWCPACQQLQPEWEEFADWSDD------LGINVAKVDV--------TQE------------------- 60 (101)
T ss_pred hCCC-EEEEEECCCCHHHHHHhHHHHHHHHhhcc------CCeEEEEEEc--------cCC-------------------
Confidence 4666 67999999999999988 7777776531 2344444432 110
Q ss_pred cccChHHHHHHHHhCCCCCCCeEEEECCCCcE
Q 014387 139 SLIDRAVIQFIKEEWQFGKKPILVVLDPHGKV 170 (425)
Q Consensus 139 ~l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkV 170 (425)
..+.+.|++.++|+++++ ++|++
T Consensus 61 --------~~~~~~~~i~~~Pt~~~~-~~g~~ 83 (101)
T cd02994 61 --------PGLSGRFFVTALPTIYHA-KDGVF 83 (101)
T ss_pred --------HhHHHHcCCcccCEEEEe-CCCCE
Confidence 125568899999999887 78875
No 79
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.46 E-value=5.6e-07 Score=75.77 Aligned_cols=72 Identities=13% Similarity=0.146 Sum_probs=50.0
Q ss_pred CCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCcc
Q 014387 63 RKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPSL 140 (425)
Q Consensus 63 GK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~l 140 (425)
++.|+|+|+|+||++|+.+. +.+++++++++. .....+.+..|.. |.
T Consensus 18 ~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~-~~~~~~~~~~vd~--------d~---------------------- 66 (108)
T cd02996 18 AELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEF-PDAGKVVWGKVDC--------DK---------------------- 66 (108)
T ss_pred CCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhcc-CCCCcEEEEEEEC--------CC----------------------
Confidence 57899999999999999988 888888886411 0001233333331 11
Q ss_pred cChHHHHHHHHhCCCCCCCeEEEECCCCcEE
Q 014387 141 IDRAVIQFIKEEWQFGKKPILVVLDPHGKVV 171 (425)
Q Consensus 141 ~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv 171 (425)
...+.+.|+++++|+++++ ++|++.
T Consensus 67 -----~~~l~~~~~v~~~Ptl~~~-~~g~~~ 91 (108)
T cd02996 67 -----ESDIADRYRINKYPTLKLF-RNGMMM 91 (108)
T ss_pred -----CHHHHHhCCCCcCCEEEEE-eCCcCc
Confidence 0246678999999999999 688743
No 80
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.46 E-value=7.4e-07 Score=74.20 Aligned_cols=67 Identities=7% Similarity=0.036 Sum_probs=49.1
Q ss_pred CCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCc
Q 014387 62 RRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPS 139 (425)
Q Consensus 62 kGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~ 139 (425)
.+++|+|+|||+||++|+.+. +.++.++++. .+.+.-|.. |.
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~-------~~~~~~vd~--------~~--------------------- 61 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKG-------KVKVGSVDC--------QK--------------------- 61 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC-------CcEEEEEEC--------Cc---------------------
Confidence 367999999999999999987 7777777632 355555542 21
Q ss_pred ccChHHHHHHHHhCCCCCCCeEEEECCCCcE
Q 014387 140 LIDRAVIQFIKEEWQFGKKPILVVLDPHGKV 170 (425)
Q Consensus 140 l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkV 170 (425)
...+.+.|+++++|+++++...|+.
T Consensus 62 ------~~~~~~~~~i~~~Pt~~~~~~g~~~ 86 (104)
T cd03004 62 ------YESLCQQANIRAYPTIRLYPGNASK 86 (104)
T ss_pred ------hHHHHHHcCCCcccEEEEEcCCCCC
Confidence 1235677899999999999876454
No 81
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.45 E-value=6.5e-07 Score=73.21 Aligned_cols=68 Identities=22% Similarity=0.331 Sum_probs=49.0
Q ss_pred CCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCcc
Q 014387 63 RKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPSL 140 (425)
Q Consensus 63 GK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~l 140 (425)
+|.|+|+|||+||++|+... |.++.+++. .+ +.++-+ |.+.
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~-------~~--i~~~~v--------d~~~-------------------- 56 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAF-------PS--VLFLSI--------EAEE-------------------- 56 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhC-------Cc--eEEEEE--------cccc--------------------
Confidence 78999999999999999877 777777752 13 444443 1110
Q ss_pred cChHHHHHHHHhCCCCCCCeEEEECCCCcEEcc
Q 014387 141 IDRAVIQFIKEEWQFGKKPILVVLDPHGKVVCP 173 (425)
Q Consensus 141 ~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~~ 173 (425)
...+.+.|++.++|++++++ +|+++..
T Consensus 57 -----~~~~~~~~~i~~~Pt~~~~~-~g~~~~~ 83 (97)
T cd02984 57 -----LPEISEKFEITAVPTFVFFR-NGTIVDR 83 (97)
T ss_pred -----CHHHHHhcCCccccEEEEEE-CCEEEEE
Confidence 01356789999999999995 8988743
No 82
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=98.43 E-value=1.2e-06 Score=79.53 Aligned_cols=103 Identities=17% Similarity=0.141 Sum_probs=74.7
Q ss_pred CCCeEeccc-cCCC-EEEEEEecCCChHhHHH-H--HHHHHHHHHhhhccCCCce-EEEEEeccCCCCCCchHHHHHHHH
Q 014387 52 TKTRVNLEV-LRRK-MVLLLISDLDISQEEVI-I--LEQLYSEARQHQTRHESQY-EVVWLPIVDPNMPWTDNKQKQFQS 125 (425)
Q Consensus 52 ~g~~V~ls~-LkGK-~VlL~FsAsWC~pCr~~-~--L~~iY~~~k~~~~k~~~~f-EIV~IsIvd~s~~w~D~~~~~F~~ 125 (425)
+|+.+++++ ++|| +|+++|.+.|||.|..+ + |.+.|+++++ .+. +|+.||. | +....++|.+
T Consensus 17 ~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~------~g~~~V~~iS~-D-----~~~~~~~~~~ 84 (155)
T cd03013 17 PPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKA------KGVDEVICVSV-N-----DPFVMKAWGK 84 (155)
T ss_pred CCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHH------CCCCEEEEEEC-C-----CHHHHHHHHH
Confidence 388999999 5885 67777788899999999 8 9999999974 367 6999995 2 2344556654
Q ss_pred HHhCCCceeeccCcccChHHHHHHHHhCCCC------C-----CCeEEEECCCCcEEcc
Q 014387 126 LQSAMPWYTVYHPSLIDRAVIQFIKEEWQFG------K-----KPILVVLDPHGKVVCP 173 (425)
Q Consensus 126 ~~~~mPW~aV~~p~l~D~~~~~~L~~~f~v~------~-----iPtlVvLD~~GkVv~~ 173 (425)
-..- .++||.+.|+. ..+.+.|++. + ...++||| +|+|+..
T Consensus 85 ~~~~----~~~f~lLsD~~--~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~ 136 (155)
T cd03013 85 ALGA----KDKIRFLADGN--GEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYL 136 (155)
T ss_pred hhCC----CCcEEEEECCC--HHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEE
Confidence 3221 13566677763 5888899972 1 36689999 6999763
No 83
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.41 E-value=1.1e-06 Score=72.29 Aligned_cols=71 Identities=17% Similarity=0.227 Sum_probs=49.1
Q ss_pred CCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCc
Q 014387 62 RRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPS 139 (425)
Q Consensus 62 kGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~ 139 (425)
+++.++|+|||+||++|+.+. +.++.+.++. ...+.++-|.. +.+ ..
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~-----~~~~~~~~id~--------~~~----------------~~-- 64 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKE-----DGKGVLAAVDC--------TKP----------------EH-- 64 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhh-----CCceEEEEEEC--------CCC----------------cc--
Confidence 467999999999999999988 8888888853 12344444432 110 00
Q ss_pred ccChHHHHHHHHhCCCCCCCeEEEECCCCcEE
Q 014387 140 LIDRAVIQFIKEEWQFGKKPILVVLDPHGKVV 171 (425)
Q Consensus 140 l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv 171 (425)
..+.+.|+++++|+++++ ++|+++
T Consensus 65 -------~~~~~~~~i~~~Pt~~~~-~~g~~~ 88 (104)
T cd02997 65 -------DALKEEYNVKGFPTFKYF-ENGKFV 88 (104)
T ss_pred -------HHHHHhCCCccccEEEEE-eCCCee
Confidence 135677899999998766 478764
No 84
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.38 E-value=1.7e-06 Score=78.81 Aligned_cols=79 Identities=10% Similarity=0.040 Sum_probs=52.3
Q ss_pred CCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCc
Q 014387 62 RRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPS 139 (425)
Q Consensus 62 kGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~ 139 (425)
+++.|+|+|||+||+||+... |.++.+++++ .++.++-|.+ |+..+--++ |
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~------~~v~f~~VDv--------d~~~~la~~-----------~-- 98 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNN------NNLKFGKIDI--------GRFPNVAEK-----------F-- 98 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc------CCeEEEEEEC--------CCCHHHHHH-----------c--
Confidence 467999999999999999988 8888877732 3577777764 221110000 0
Q ss_pred ccChHHHHHHHHhCCCCCCCeEEEECCCCcEEccccc
Q 014387 140 LIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVCPNAL 176 (425)
Q Consensus 140 l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~~na~ 176 (425)
.+...|+++++||++++. +|+.+.+-.-
T Consensus 99 --------~V~~~~~v~~~PT~ilf~-~Gk~v~r~~G 126 (152)
T cd02962 99 --------RVSTSPLSKQLPTIILFQ-GGKEVARRPY 126 (152)
T ss_pred --------CceecCCcCCCCEEEEEE-CCEEEEEEec
Confidence 112234555699999995 8988865443
No 85
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.35 E-value=2e-06 Score=69.94 Aligned_cols=66 Identities=26% Similarity=0.279 Sum_probs=49.9
Q ss_pred CCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCcc
Q 014387 63 RKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPSL 140 (425)
Q Consensus 63 GK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~l 140 (425)
+|.|+|+||+.||++|+.+. |.++.+++. .++.++.|.. +..
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~-------~~~~~~~vd~--------~~~--------------------- 57 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYE-------GKVKFVKLNV--------DEN--------------------- 57 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhc-------CCeEEEEEEC--------CCC---------------------
Confidence 57999999999999999987 777777663 2477777653 111
Q ss_pred cChHHHHHHHHhCCCCCCCeEEEECCCCcEE
Q 014387 141 IDRAVIQFIKEEWQFGKKPILVVLDPHGKVV 171 (425)
Q Consensus 141 ~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv 171 (425)
..+.+.|++.++|+++++ ++|+++
T Consensus 58 ------~~~~~~~~v~~~P~~~~~-~~g~~~ 81 (101)
T TIGR01068 58 ------PDIAAKYGIRSIPTLLLF-KNGKEV 81 (101)
T ss_pred ------HHHHHHcCCCcCCEEEEE-eCCcEe
Confidence 134567899999999999 678765
No 86
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.32 E-value=2.1e-06 Score=70.53 Aligned_cols=68 Identities=13% Similarity=0.108 Sum_probs=49.5
Q ss_pred CCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCcc
Q 014387 63 RKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPSL 140 (425)
Q Consensus 63 GK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~l 140 (425)
+|.|+|+|||+||++|+.+. +.++.++++. ..++.++-|.. +.. .
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-----~~~~~~~~id~--------~~~-----------------~--- 64 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFAN-----EDDVVIAKVDA--------DEA-----------------N--- 64 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCC-----CCCEEEEEEEC--------CCc-----------------c---
Confidence 57999999999999999987 8888888742 12455555542 110 1
Q ss_pred cChHHHHHHHHhCCCCCCCeEEEECCCCc
Q 014387 141 IDRAVIQFIKEEWQFGKKPILVVLDPHGK 169 (425)
Q Consensus 141 ~D~~~~~~L~~~f~v~~iPtlVvLD~~Gk 169 (425)
..+.+.|+++++|+++++++.|+
T Consensus 65 ------~~~~~~~~i~~~P~~~~~~~~~~ 87 (105)
T cd02998 65 ------KDLAKKYGVSGFPTLKFFPKGST 87 (105)
T ss_pred ------hhhHHhCCCCCcCEEEEEeCCCC
Confidence 13566789999999999988764
No 87
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.31 E-value=4.3e-06 Score=71.94 Aligned_cols=75 Identities=9% Similarity=0.065 Sum_probs=50.5
Q ss_pred CCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCcc
Q 014387 63 RKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPSL 140 (425)
Q Consensus 63 GK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~l 140 (425)
+|+|+|+|||+||++|+.+. +.++.+++++. ...+.+.-|.. +.+.
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~----~~~v~~~~vd~--------~~~~-------------------- 66 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKW----RPVVRVAAVDC--------ADEE-------------------- 66 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhc----CCceEEEEEec--------cchh--------------------
Confidence 47999999999999999988 88888888641 11244433321 1110
Q ss_pred cChHHHHHHHHhCCCCCCCeEEEECCCCcEEcccc
Q 014387 141 IDRAVIQFIKEEWQFGKKPILVVLDPHGKVVCPNA 175 (425)
Q Consensus 141 ~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~~na 175 (425)
...+.+.|+++++|+++++.+.+ ....+|
T Consensus 67 -----~~~~~~~~~i~~~Pt~~lf~~~~-~~~~~~ 95 (114)
T cd02992 67 -----NVALCRDFGVTGYPTLRYFPPFS-KEATDG 95 (114)
T ss_pred -----hHHHHHhCCCCCCCEEEEECCCC-ccCCCC
Confidence 12456789999999999996555 444433
No 88
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.31 E-value=1.3e-05 Score=76.32 Aligned_cols=150 Identities=12% Similarity=0.046 Sum_probs=82.3
Q ss_pred CCEEEEEEe--cCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccC
Q 014387 63 RKMVLLLIS--DLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHP 138 (425)
Q Consensus 63 GK~VlL~Fs--AsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p 138 (425)
|+.|+++++ |+||+||+... |.++-+++ .+++|.++.+ |.++
T Consensus 20 ~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~--------~~~~i~~v~v--------d~~~------------------ 65 (215)
T TIGR02187 20 PVEIVVFTDNDKEGCQYCKETEQLLEELSEVS--------PKLKLEIYDF--------DTPE------------------ 65 (215)
T ss_pred CeEEEEEcCCCCCCCCchHHHHHHHHHHHhhC--------CCceEEEEec--------CCcc------------------
Confidence 445556555 59999999865 55554444 2466777764 2110
Q ss_pred cccChHHHHHHHHhCCCCCCCeEEEECCCCcEEc--ccc---chhhhhcCCccCCCCchhHHHhhhhcccceeccccCCC
Q 014387 139 SLIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVC--PNA---LHMMWIWGSLAYPFSTAREEALWREETWRLELLVDGLD 213 (425)
Q Consensus 139 ~l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~--~na---~~~I~~~g~~aFPft~~~~~~L~~~~~w~~~ll~d~~d 213 (425)
...+.+.|+|.++||+++++ +|+.+. ..| .+.+..| .+.+..-.. ....++
T Consensus 66 -------~~~l~~~~~V~~~Pt~~~f~-~g~~~~~~~~G~~~~~~l~~~-----------i~~~~~~~~-----~~~~L~ 121 (215)
T TIGR02187 66 -------DKEEAEKYGVERVPTTIILE-EGKDGGIRYTGIPAGYEFAAL-----------IEDIVRVSQ-----GEPGLS 121 (215)
T ss_pred -------cHHHHHHcCCCccCEEEEEe-CCeeeEEEEeecCCHHHHHHH-----------HHHHHHhcC-----CCCCCC
Confidence 12567889999999999997 455432 112 1111110 111110000 000112
Q ss_pred ccc---cccccCCeEEEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCCChhHHhh
Q 014387 214 PVI---LNWMAEGRYICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSNPKDRVRR 271 (425)
Q Consensus 214 ~~i---~~~~~egk~I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~~e~f~~ 271 (425)
+.. .+...++..|-+|.+..|++|+..-+.+.+++.+ ...+.++.|.-+...+..++
T Consensus 122 ~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~-~~~i~~~~vD~~~~~~~~~~ 181 (215)
T TIGR02187 122 EKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALA-NDKILGEMIEANENPDLAEK 181 (215)
T ss_pred HHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHh-cCceEEEEEeCCCCHHHHHH
Confidence 211 1112344566666676699999988888888655 44666667777765544443
No 89
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=1e-06 Score=79.77 Aligned_cols=66 Identities=21% Similarity=0.298 Sum_probs=51.1
Q ss_pred CCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCcc
Q 014387 63 RKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPSL 140 (425)
Q Consensus 63 GK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~l 140 (425)
+.+|++.|||.||+||+... |+++-.+++. .|.+.-|.+ |+ +
T Consensus 61 ~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g-------~~k~~kvdt--------D~------------------~--- 104 (150)
T KOG0910|consen 61 DVPVLVDFHAEWCGPCKMLGPILEELVSEYAG-------KFKLYKVDT--------DE------------------H--- 104 (150)
T ss_pred CCCEEEEEecCcCccHhHhhHHHHHHHHhhcC-------eEEEEEEcc--------cc------------------c---
Confidence 57999999999999999988 9998888843 466666653 22 1
Q ss_pred cChHHHHHHHHhCCCCCCCeEEEECCCCcEE
Q 014387 141 IDRAVIQFIKEEWQFGKKPILVVLDPHGKVV 171 (425)
Q Consensus 141 ~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv 171 (425)
-.+++.|+|+.+||++++. +|+.+
T Consensus 105 ------~ela~~Y~I~avPtvlvfk-nGe~~ 128 (150)
T KOG0910|consen 105 ------PELAEDYEISAVPTVLVFK-NGEKV 128 (150)
T ss_pred ------cchHhhcceeeeeEEEEEE-CCEEe
Confidence 1356789999999999994 66665
No 90
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.29 E-value=2.7e-06 Score=73.62 Aligned_cols=67 Identities=12% Similarity=0.018 Sum_probs=47.9
Q ss_pred CCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCc
Q 014387 62 RRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPS 139 (425)
Q Consensus 62 kGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~ 139 (425)
.++.|+|.|||+||+||+... +.++.+++++ .+.++-|.+ |..
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~-------~v~~~~Vd~--------d~~-------------------- 72 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD-------QVLFVAINC--------WWP-------------------- 72 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC-------CeEEEEEEC--------CCC--------------------
Confidence 568999999999999999987 8888887742 344554442 211
Q ss_pred ccChHHHHHHHHhCCCCCCCeEEEECCCCcE
Q 014387 140 LIDRAVIQFIKEEWQFGKKPILVVLDPHGKV 170 (425)
Q Consensus 140 l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkV 170 (425)
. ...++.|+++++||+.++ .+|+.
T Consensus 73 ---~---~l~~~~~~I~~~PTl~lf-~~g~~ 96 (113)
T cd03006 73 ---Q---GKCRKQKHFFYFPVIHLY-YRSRG 96 (113)
T ss_pred ---h---HHHHHhcCCcccCEEEEE-ECCcc
Confidence 0 122357899999999999 56664
No 91
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.29 E-value=3.3e-06 Score=73.89 Aligned_cols=38 Identities=5% Similarity=0.141 Sum_probs=31.5
Q ss_pred CCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEec
Q 014387 62 RRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPI 108 (425)
Q Consensus 62 kGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsI 108 (425)
.|+.+++||+++|||||+.+. |.++-++. +..|.+|.+
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~---------~~~~y~vdv 61 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQT---------KAPIYYIDS 61 (122)
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHhc---------CCcEEEEEC
Confidence 367899999999999999998 88776652 367999985
No 92
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.28 E-value=4.7e-06 Score=66.94 Aligned_cols=67 Identities=13% Similarity=0.082 Sum_probs=50.1
Q ss_pred CCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCc
Q 014387 62 RRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPS 139 (425)
Q Consensus 62 kGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~ 139 (425)
++++|+++||++||++|+.+. +.++.+.++. +.++.++-|.. +.
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-----~~~~~~~~v~~--------~~--------------------- 59 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKG-----DGKVVVAKVDC--------TA--------------------- 59 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhcc-----CCceEEEEeec--------cc---------------------
Confidence 456999999999999999988 8888877741 23455555542 11
Q ss_pred ccChHHHHHHHHhCCCCCCCeEEEECCCC
Q 014387 140 LIDRAVIQFIKEEWQFGKKPILVVLDPHG 168 (425)
Q Consensus 140 l~D~~~~~~L~~~f~v~~iPtlVvLD~~G 168 (425)
...+.+.|+++++|++++++++|
T Consensus 60 ------~~~~~~~~~i~~~Pt~~~~~~~~ 82 (101)
T cd02961 60 ------NNDLCSEYGVRGYPTIKLFPNGS 82 (101)
T ss_pred ------hHHHHHhCCCCCCCEEEEEcCCC
Confidence 02456778999999999999886
No 93
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=1.3e-06 Score=86.77 Aligned_cols=70 Identities=16% Similarity=0.189 Sum_probs=55.3
Q ss_pred ccCCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeecc
Q 014387 60 VLRRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYH 137 (425)
Q Consensus 60 ~LkGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~ 137 (425)
..+-++|+++|||+||+||+..+ |.++-.+++. .|.++-|++ |..
T Consensus 40 ~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G-------~f~LakvN~--------D~~------------------ 86 (304)
T COG3118 40 SSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG-------KFKLAKVNC--------DAE------------------ 86 (304)
T ss_pred HccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC-------ceEEEEecC--------Ccc------------------
Confidence 34567999999999999999999 9999999953 688888874 321
Q ss_pred CcccChHHHHHHHHhCCCCCCCeEEEECCCCcEEc
Q 014387 138 PSLIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVC 172 (425)
Q Consensus 138 p~l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~ 172 (425)
..+...|+|++||+.+++ .+|+.|.
T Consensus 87 ---------p~vAaqfgiqsIPtV~af-~dGqpVd 111 (304)
T COG3118 87 ---------PMVAAQFGVQSIPTVYAF-KDGQPVD 111 (304)
T ss_pred ---------hhHHHHhCcCcCCeEEEe-eCCcCcc
Confidence 135668999999999887 5666654
No 94
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.27 E-value=5.1e-06 Score=68.39 Aligned_cols=63 Identities=10% Similarity=0.016 Sum_probs=47.0
Q ss_pred CCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCcc
Q 014387 63 RKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPSL 140 (425)
Q Consensus 63 GK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~l 140 (425)
++.|+|+|||+||++|+.+. +.++.++++. .+.+..+.. +.
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~-------~~~~~~id~--------~~---------------------- 60 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG-------IVKVGAVDA--------DV---------------------- 60 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC-------CceEEEEEC--------cc----------------------
Confidence 56799999999999999987 8888877732 455555542 11
Q ss_pred cChHHHHHHHHhCCCCCCCeEEEECCC
Q 014387 141 IDRAVIQFIKEEWQFGKKPILVVLDPH 167 (425)
Q Consensus 141 ~D~~~~~~L~~~f~v~~iPtlVvLD~~ 167 (425)
...+.+.|+++++|+++++++.
T Consensus 61 -----~~~~~~~~~i~~~P~~~~~~~~ 82 (103)
T cd03001 61 -----HQSLAQQYGVRGFPTIKVFGAG 82 (103)
T ss_pred -----hHHHHHHCCCCccCEEEEECCC
Confidence 0135678899999999999754
No 95
>PTZ00062 glutaredoxin; Provisional
Probab=98.24 E-value=4.2e-06 Score=79.76 Aligned_cols=135 Identities=9% Similarity=0.184 Sum_probs=76.0
Q ss_pred CEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCccc
Q 014387 64 KMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPSLI 141 (425)
Q Consensus 64 K~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~l~ 141 (425)
..++|+|||+|||||+... |.++-+++. + |.|+.+ | .|
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~--------~--~~F~~V-~-----~d------------------------ 57 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFP--------S--LEFYVV-N-----LA------------------------ 57 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCC--------C--cEEEEE-c-----cc------------------------
Confidence 4689999999999999766 666666552 2 555553 1 11
Q ss_pred ChHHHHHHHHhCCCCCCCeEEEECCCCcEEcc----ccchhhh---hcCCccCCCCchhHHHhhhhcccceeccccCCCc
Q 014387 142 DRAVIQFIKEEWQFGKKPILVVLDPHGKVVCP----NALHMMW---IWGSLAYPFSTAREEALWREETWRLELLVDGLDP 214 (425)
Q Consensus 142 D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~~----na~~~I~---~~g~~aFPft~~~~~~L~~~~~w~~~ll~d~~d~ 214 (425)
|+|.++|+++++. +|+++.+ |+..+.. .|-. +...+++ ..
T Consensus 58 -----------~~V~~vPtfv~~~-~g~~i~r~~G~~~~~~~~~~~~~~~------~~~~~~~---------------~~ 104 (204)
T PTZ00062 58 -----------DANNEYGVFEFYQ-NSQLINSLEGCNTSTLVSFIRGWAQ------KGSSEDT---------------VE 104 (204)
T ss_pred -----------cCcccceEEEEEE-CCEEEeeeeCCCHHHHHHHHHHHcC------CCCHHHH---------------HH
Confidence 7888999999994 7777654 4333322 1111 0000111 11
Q ss_pred cccccccCCe-EEEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCCChhHHhhhhhh
Q 014387 215 VILNWMAEGR-YICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSNPKDRVRRNNDT 275 (425)
Q Consensus 215 ~i~~~~~egk-~I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~~e~f~~~~~~ 275 (425)
.+.+.+...+ .+|.-|+..+|+| .|..+++.+++..+++++.+=|..| +..++.+..
T Consensus 105 ~v~~li~~~~Vvvf~Kg~~~~p~C-~~C~~~k~~L~~~~i~y~~~DI~~d---~~~~~~l~~ 162 (204)
T PTZ00062 105 KIERLIRNHKILLFMKGSKTFPFC-RFSNAVVNMLNSSGVKYETYNIFED---PDLREELKV 162 (204)
T ss_pred HHHHHHhcCCEEEEEccCCCCCCC-hhHHHHHHHHHHcCCCEEEEEcCCC---HHHHHHHHH
Confidence 1222223322 2333454443444 2335677777788999998888765 334554443
No 96
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=2.2e-06 Score=73.51 Aligned_cols=64 Identities=16% Similarity=0.215 Sum_probs=45.6
Q ss_pred CCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCcc
Q 014387 63 RKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPSL 140 (425)
Q Consensus 63 GK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~l 140 (425)
+|.|+++|+|+||+||+.-- +.++-.++. +..++-|.+ |+
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~--------~v~Flkvdv--------de---------------------- 62 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYP--------DVVFLKVDV--------DE---------------------- 62 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCC--------CCEEEEEec--------cc----------------------
Confidence 79999999999999999755 555555552 355555553 21
Q ss_pred cChHHHHHHHHhCCCCCCCeEEEECCCCcE
Q 014387 141 IDRAVIQFIKEEWQFGKKPILVVLDPHGKV 170 (425)
Q Consensus 141 ~D~~~~~~L~~~f~v~~iPtlVvLD~~GkV 170 (425)
...+.+.|+++.+||++++ ++|+.
T Consensus 63 -----~~~~~~~~~V~~~PTf~f~-k~g~~ 86 (106)
T KOG0907|consen 63 -----LEEVAKEFNVKAMPTFVFY-KGGEE 86 (106)
T ss_pred -----CHhHHHhcCceEeeEEEEE-ECCEE
Confidence 1245678999999999999 44443
No 97
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.22 E-value=3.5e-06 Score=73.86 Aligned_cols=68 Identities=7% Similarity=0.148 Sum_probs=47.4
Q ss_pred CEEEEEEecCCChH--hHHHHH----HHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeecc
Q 014387 64 KMVLLLISDLDISQ--EEVIIL----EQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYH 137 (425)
Q Consensus 64 K~VlL~FsAsWC~p--Cr~~~L----~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~ 137 (425)
++|+++|||.||+| |+.+++ .++..++-. ..++.|+-|.+ |+.
T Consensus 28 ~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~-----~~~v~~~kVD~--------d~~------------------ 76 (120)
T cd03065 28 VLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLE-----DKGIGFGLVDS--------KKD------------------ 76 (120)
T ss_pred ceEEEEECCCcCChhhChhhcchhhHHHHHHHHhh-----cCCCEEEEEeC--------CCC------------------
Confidence 59999999999999 997663 444444311 12455555542 111
Q ss_pred CcccChHHHHHHHHhCCCCCCCeEEEECCCCcEEc
Q 014387 138 PSLIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVC 172 (425)
Q Consensus 138 p~l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~ 172 (425)
..|+++|+|+++||++++. +|+++.
T Consensus 77 ---------~~La~~~~I~~iPTl~lfk-~G~~v~ 101 (120)
T cd03065 77 ---------AKVAKKLGLDEEDSIYVFK-DDEVIE 101 (120)
T ss_pred ---------HHHHHHcCCccccEEEEEE-CCEEEE
Confidence 2577899999999999994 898764
No 98
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.21 E-value=4.8e-06 Score=71.09 Aligned_cols=66 Identities=15% Similarity=0.246 Sum_probs=46.9
Q ss_pred CCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCcc
Q 014387 63 RKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPSL 140 (425)
Q Consensus 63 GK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~l 140 (425)
++.|+|+|||+||+||+... |.++.+++. +..++-|.+ +.
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~--------~v~f~~vd~--------~~---------------------- 65 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYP--------ETKFVKINA--------EK---------------------- 65 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC--------CcEEEEEEc--------hh----------------------
Confidence 58999999999999999866 666666552 234444331 11
Q ss_pred cChHHHHHHHHhCCCCCCCeEEEECCCCcEEcc
Q 014387 141 IDRAVIQFIKEEWQFGKKPILVVLDPHGKVVCP 173 (425)
Q Consensus 141 ~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~~ 173 (425)
. .+.+.|++.++|+++++ .+|+.+.+
T Consensus 66 -----~-~l~~~~~i~~~Pt~~~f-~~G~~v~~ 91 (113)
T cd02957 66 -----A-FLVNYLDIKVLPTLLVY-KNGELIDN 91 (113)
T ss_pred -----h-HHHHhcCCCcCCEEEEE-ECCEEEEE
Confidence 1 45677899999998888 47888753
No 99
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.19 E-value=3.3e-06 Score=73.38 Aligned_cols=73 Identities=14% Similarity=0.173 Sum_probs=51.1
Q ss_pred CCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCc
Q 014387 62 RRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPS 139 (425)
Q Consensus 62 kGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~ 139 (425)
.+|+|+|.|+|+||+||+.-- |.++-+++++ ...|+-|.+ |+
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~-------~~~f~kVDV--------De--------------------- 56 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK-------MASIYLVDV--------DK--------------------- 56 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccC-------ceEEEEEec--------cc---------------------
Confidence 689999999999999998754 7777666631 133333332 21
Q ss_pred ccChHHHHHHHHhCCCCCCCeEEEECCCCcEEccccchhhhhcCC
Q 014387 140 LIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVCPNALHMMWIWGS 184 (425)
Q Consensus 140 l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~~na~~~I~~~g~ 184 (425)
...+.+.|+++.+|+++++ .|+.||.-+.|.
T Consensus 57 ------v~dva~~y~I~amPtfvff--------kngkh~~~d~gt 87 (114)
T cd02986 57 ------VPVYTQYFDISYIPSTIFF--------FNGQHMKVDYGS 87 (114)
T ss_pred ------cHHHHHhcCceeCcEEEEE--------ECCcEEEEecCC
Confidence 1246678999999999976 566677777774
No 100
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.17 E-value=5.3e-06 Score=80.12 Aligned_cols=67 Identities=16% Similarity=0.136 Sum_probs=49.2
Q ss_pred CCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCcc
Q 014387 63 RKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPSL 140 (425)
Q Consensus 63 GK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~l 140 (425)
++.|+|+|||+||++|+.+. +.++.+++++ .+.+.-|. .++.
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~-------~v~~~~VD--------~~~~--------------------- 95 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKG-------QVNVADLD--------ATRA--------------------- 95 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcCC-------CeEEEEec--------Cccc---------------------
Confidence 57999999999999999988 8888887742 33333332 1110
Q ss_pred cChHHHHHHHHhCCCCCCCeEEEECCCCcEEc
Q 014387 141 IDRAVIQFIKEEWQFGKKPILVVLDPHGKVVC 172 (425)
Q Consensus 141 ~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~ 172 (425)
..+.+.|+|+++|++++++ +|+++.
T Consensus 96 ------~~l~~~~~I~~~PTl~~f~-~G~~v~ 120 (224)
T PTZ00443 96 ------LNLAKRFAIKGYPTLLLFD-KGKMYQ 120 (224)
T ss_pred ------HHHHHHcCCCcCCEEEEEE-CCEEEE
Confidence 1356789999999999998 787653
No 101
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.11 E-value=2e-05 Score=71.40 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=49.2
Q ss_pred ccCCeEEEEEeCCC-cchHHHHHHHHHHHHHH--------cCCCeeEEEeccCCChhHHhhhhhhhh
Q 014387 220 MAEGRYICLYGGED-MDWIRKFTTATNAVAKT--------AGIPLGMVYVGKSNPKDRVRRNNDTIA 277 (425)
Q Consensus 220 ~~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~--------~~~~~Eiv~Vs~d~~~e~f~~~~~~i~ 277 (425)
...||.+.|||.|. |+||++++|.|.++.++ .+.+||+|+||.|.+++.++++++.+.
T Consensus 22 ~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~ 88 (146)
T cd03008 22 RLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMP 88 (146)
T ss_pred HhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCC
Confidence 46899999999999 99999999999998432 234799999999999988998876554
No 102
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.11 E-value=8.2e-06 Score=88.63 Aligned_cols=73 Identities=12% Similarity=0.060 Sum_probs=51.7
Q ss_pred cCCCEEEEEEecCCChHhHHHH---H--HHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceee
Q 014387 61 LRRKMVLLLISDLDISQEEVII---L--EQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTV 135 (425)
Q Consensus 61 LkGK~VlL~FsAsWC~pCr~~~---L--~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV 135 (425)
-+||+|+|+|||+||++|+..- + .++.++++ ++.++-|.+ ++.+.
T Consensus 472 ~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--------~~~~v~vDv-------t~~~~--------------- 521 (571)
T PRK00293 472 GKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--------DTVLLQADV-------TANNA--------------- 521 (571)
T ss_pred hcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--------CCEEEEEEC-------CCCCh---------------
Confidence 3589999999999999999753 2 45555552 355555543 22110
Q ss_pred ccCcccChHHHHHHHHhCCCCCCCeEEEECCCCcEEc
Q 014387 136 YHPSLIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVC 172 (425)
Q Consensus 136 ~~p~l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~ 172 (425)
..+.+.++|++.++|+++++|++|+++.
T Consensus 522 ---------~~~~l~~~~~v~g~Pt~~~~~~~G~~i~ 549 (571)
T PRK00293 522 ---------EDVALLKHYNVLGLPTILFFDAQGQEIP 549 (571)
T ss_pred ---------hhHHHHHHcCCCCCCEEEEECCCCCCcc
Confidence 1235677899999999999999999863
No 103
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.08 E-value=1.4e-05 Score=65.21 Aligned_cols=66 Identities=17% Similarity=0.211 Sum_probs=49.2
Q ss_pred CCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCcc
Q 014387 63 RKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPSL 140 (425)
Q Consensus 63 GK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~l 140 (425)
++.|+|+|++.||++|+.+. |.++.+++.+ ++.++.|.+ +..
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-------~v~~~~vd~--------~~~--------------------- 60 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-------NVKFAKVDC--------DEN--------------------- 60 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-------TSEEEEEET--------TTS---------------------
T ss_pred CCCEEEEEeCCCCCccccccceeccccccccc-------ccccchhhh--------hcc---------------------
Confidence 69999999999999999987 8888777631 466666542 110
Q ss_pred cChHHHHHHHHhCCCCCCCeEEEECCCCcEE
Q 014387 141 IDRAVIQFIKEEWQFGKKPILVVLDPHGKVV 171 (425)
Q Consensus 141 ~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv 171 (425)
..+.+.|++.++|+++++.. |+.+
T Consensus 61 ------~~l~~~~~v~~~Pt~~~~~~-g~~~ 84 (103)
T PF00085_consen 61 ------KELCKKYGVKSVPTIIFFKN-GKEV 84 (103)
T ss_dssp ------HHHHHHTTCSSSSEEEEEET-TEEE
T ss_pred ------chhhhccCCCCCCEEEEEEC-CcEE
Confidence 24667899999999999954 4444
No 104
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=2.9e-05 Score=73.13 Aligned_cols=105 Identities=17% Similarity=0.178 Sum_probs=80.5
Q ss_pred CeEeccccCCCEEEEEEecCCC-hHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCC
Q 014387 54 TRVNLEVLRRKMVLLLISDLDI-SQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAM 130 (425)
Q Consensus 54 ~~V~ls~LkGK~VlL~FsAsWC-~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~m 130 (425)
..++++++.||.++|+|+-.+- +-|-.++ +.+.|.++++ .+.||+.||+ | +.-.-.+|.+.-.+-
T Consensus 24 ~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~------~g~eVigvS~-D-----s~fsH~aW~~~~~~~ 91 (194)
T COG0450 24 EEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQK------RGVEVIGVST-D-----SVFSHKAWKATIREA 91 (194)
T ss_pred eEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHH------cCCEEEEEec-C-----cHHHHHHHHhcHHhc
Confidence 3999999999999999999884 5587877 9999999975 3799999996 3 455566676542222
Q ss_pred Cce-eeccCcccChHHHHHHHHhCCCCC------CCeEEEECCCCcEEc
Q 014387 131 PWY-TVYHPSLIDRAVIQFIKEEWQFGK------KPILVVLDPHGKVVC 172 (425)
Q Consensus 131 PW~-aV~~p~l~D~~~~~~L~~~f~v~~------iPtlVvLD~~GkVv~ 172 (425)
.=+ .++||.+.|. .+.|++.|++-. .=.++||||+|+|..
T Consensus 92 ~gi~~i~~PmiaD~--~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~ 138 (194)
T COG0450 92 GGIGKIKFPMIADP--KGEIARAYGVLHPEEGLALRGTFIIDPDGVIRH 138 (194)
T ss_pred CCccceecceEEcC--chhHHHHcCCcccCCCcceeEEEEECCCCeEEE
Confidence 223 3899998886 468999999853 346899999998854
No 105
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.03 E-value=2.6e-05 Score=64.06 Aligned_cols=40 Identities=13% Similarity=0.087 Sum_probs=31.1
Q ss_pred CCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEe
Q 014387 63 RKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLP 107 (425)
Q Consensus 63 GK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~Is 107 (425)
||.|+|+|||+||++|+.+. +.++.+.+++ ..++.+.-|.
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-----~~~~~~~~id 59 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLKG-----DDNVVIAKMD 59 (104)
T ss_pred CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcC-----CCCEEEEEEe
Confidence 58999999999999999988 8888888743 1245555554
No 106
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.03 E-value=1.5e-05 Score=71.98 Aligned_cols=67 Identities=4% Similarity=-0.009 Sum_probs=48.7
Q ss_pred CCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCc
Q 014387 62 RRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPS 139 (425)
Q Consensus 62 kGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~ 139 (425)
.+|+|+|.|+|+||+||+... |.++-+++++ ...|+-|.+ |+.
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~-------~~~~~kVDV--------De~-------------------- 66 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKN-------FAVIYLVDI--------TEV-------------------- 66 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC-------ceEEEEEEC--------CCC--------------------
Confidence 568999999999999999876 8887777742 355565553 211
Q ss_pred ccChHHHHHHHHhCCCCCCCeEEEECCCCcE
Q 014387 140 LIDRAVIQFIKEEWQFGKKPILVVLDPHGKV 170 (425)
Q Consensus 140 l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkV 170 (425)
..+.+.|++++.|+++++=++|++
T Consensus 67 -------~dla~~y~I~~~~t~~~ffk~g~~ 90 (142)
T PLN00410 67 -------PDFNTMYELYDPCTVMFFFRNKHI 90 (142)
T ss_pred -------HHHHHHcCccCCCcEEEEEECCeE
Confidence 246678999988888866567764
No 107
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.02 E-value=1.2e-05 Score=69.72 Aligned_cols=69 Identities=13% Similarity=0.198 Sum_probs=52.2
Q ss_pred CCCEEEEEEecCC--ChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeecc
Q 014387 62 RRKMVLLLISDLD--ISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYH 137 (425)
Q Consensus 62 kGK~VlL~FsAsW--C~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~ 137 (425)
.|.+++|+|+|+| ||+|+... |.++-+++.+ .+.++-|.+ |+.
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~-------~v~f~kVdi--------d~~------------------ 72 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG-------RFRAAVVGR--------ADE------------------ 72 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC-------cEEEEEEEC--------CCC------------------
Confidence 4678899999997 99999987 8888887732 355666653 110
Q ss_pred CcccChHHHHHHHHhCCCCCCCeEEEECCCCcEEcc
Q 014387 138 PSLIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVCP 173 (425)
Q Consensus 138 p~l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~~ 173 (425)
..|+..|+|+++||++++. +|+++..
T Consensus 73 ---------~~la~~f~V~sIPTli~fk-dGk~v~~ 98 (111)
T cd02965 73 ---------QALAARFGVLRTPALLFFR-DGRYVGV 98 (111)
T ss_pred ---------HHHHHHcCCCcCCEEEEEE-CCEEEEE
Confidence 1577889999999999984 7888764
No 108
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.02 E-value=9.9e-06 Score=69.69 Aligned_cols=67 Identities=15% Similarity=0.231 Sum_probs=49.0
Q ss_pred CCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCc
Q 014387 62 RRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPS 139 (425)
Q Consensus 62 kGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~ 139 (425)
.++.|+++|||.||+||+... |.++-+++. ++.++-|.+ |+
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~--------~i~f~~Vd~--------~~--------------------- 63 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHL--------ETKFIKVNA--------EK--------------------- 63 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcC--------CCEEEEEEc--------cc---------------------
Confidence 357899999999999999766 777766552 345555542 11
Q ss_pred ccChHHHHHHHHhCCCCCCCeEEEECCCCcEEc
Q 014387 140 LIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVC 172 (425)
Q Consensus 140 l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~ 172 (425)
...+.+.|++.++|+++++. +|+++.
T Consensus 64 ------~~~l~~~~~v~~vPt~l~fk-~G~~v~ 89 (113)
T cd02989 64 ------APFLVEKLNIKVLPTVILFK-NGKTVD 89 (113)
T ss_pred ------CHHHHHHCCCccCCEEEEEE-CCEEEE
Confidence 12467889999999999885 788775
No 109
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=98.00 E-value=8.1e-05 Score=71.00 Aligned_cols=114 Identities=13% Similarity=0.222 Sum_probs=80.6
Q ss_pred cccCCCCCeEeccccCCCEEEEEEecCCChH-hHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHH
Q 014387 47 LVDGATKTRVNLEVLRRKMVLLLISDLDISQ-EEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQF 123 (425)
Q Consensus 47 l~dg~~g~~V~ls~LkGK~VlL~FsAsWC~p-Cr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F 123 (425)
.+...+|+.++...|+||+++|+|.=+-||. |-..+ |.++.+++.+ ..+.++.+|+|++ |+ ..|. .+..
T Consensus 51 ~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~---~~~~~v~vv~itv-DP---erDt-p~~l 122 (207)
T COG1999 51 ELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGE---GEGDDVQVVFITV-DP---ERDT-PEVL 122 (207)
T ss_pred eeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhcc---ccCCCEEEEEEEE-CC---CCCC-HHHH
Confidence 4556789999999999999999999999976 88877 9999999974 2457999999996 53 2232 3333
Q ss_pred HHHHh---CCCceeeccCcccChHHHHHHHHhCCCCC---------------CCeEEEECCCCcEEc
Q 014387 124 QSLQS---AMPWYTVYHPSLIDRAVIQFIKEEWQFGK---------------KPILVVLDPHGKVVC 172 (425)
Q Consensus 124 ~~~~~---~mPW~aV~~p~l~D~~~~~~L~~~f~v~~---------------iPtlVvLD~~GkVv~ 172 (425)
++|.. .-+|..+.- +.+..+.+.+.|++.. -...+++|++|++..
T Consensus 123 k~Y~~~~~~~~~~~ltg----~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~ 185 (207)
T COG1999 123 KKYAELNFDPRWIGLTG----TPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLG 185 (207)
T ss_pred HHHhcccCCCCeeeeeC----CHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEE
Confidence 44443 223777664 2455667777777652 224567777777764
No 110
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.00 E-value=1.6e-05 Score=68.30 Aligned_cols=62 Identities=16% Similarity=0.170 Sum_probs=43.9
Q ss_pred CCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCcc
Q 014387 63 RKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPSL 140 (425)
Q Consensus 63 GK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~l 140 (425)
++.|+++|||+||+||+... |.++-.++ ..++++.|.+ |..
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~--------~~i~~~~vd~--------d~~--------------------- 64 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS--------DKLKLEIYDF--------DED--------------------- 64 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhc--------CceEEEEEeC--------CcC---------------------
Confidence 45688999999999999765 66665443 2466666653 210
Q ss_pred cChHHHHHHHHhCCCCCCCeEEEECCC
Q 014387 141 IDRAVIQFIKEEWQFGKKPILVVLDPH 167 (425)
Q Consensus 141 ~D~~~~~~L~~~f~v~~iPtlVvLD~~ 167 (425)
..+.+.|++.++|++++++..
T Consensus 65 ------~~l~~~~~v~~vPt~~i~~~g 85 (113)
T cd02975 65 ------KEKAEKYGVERVPTTIFLQDG 85 (113)
T ss_pred ------HHHHHHcCCCcCCEEEEEeCC
Confidence 135678999999999999753
No 111
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.99 E-value=1.6e-05 Score=73.85 Aligned_cols=88 Identities=17% Similarity=0.124 Sum_probs=56.4
Q ss_pred CCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCcc
Q 014387 63 RKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPSL 140 (425)
Q Consensus 63 GK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~l 140 (425)
++.|+|+|||+||+||+... |.++-.++. . |.|+-| | .|.
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~--------~--vkF~kV-d-----~d~---------------------- 124 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYP--------A--VKFCKI-R-----ASA---------------------- 124 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCC--------C--eEEEEE-e-----ccc----------------------
Confidence 45999999999999999766 777766541 2 445543 1 111
Q ss_pred cChHHHHHHHHhCCCCCCCeEEEECCCCcEEccccchhhhhcCCccCCCCchhHHHhhh
Q 014387 141 IDRAVIQFIKEEWQFGKKPILVVLDPHGKVVCPNALHMMWIWGSLAYPFSTAREEALWR 199 (425)
Q Consensus 141 ~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~~na~~~I~~~g~~aFPft~~~~~~L~~ 199 (425)
. .+.+.|++.++||++++- +|+++..-. . ....|+. =|+..+.+.++.
T Consensus 125 ---~---~l~~~f~v~~vPTlllyk-~G~~v~~~v-G-~~~~~g~--~f~~~~le~~L~ 172 (175)
T cd02987 125 ---T---GASDEFDTDALPALLVYK-GGELIGNFV-R-VTEDLGE--DFDAEDLESFLV 172 (175)
T ss_pred ---h---hhHHhCCCCCCCEEEEEE-CCEEEEEEe-c-hHHhcCC--CCCHHHHHHHHH
Confidence 0 245678999999999884 788875321 1 1233444 456666665543
No 112
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=97.97 E-value=2.1e-05 Score=64.15 Aligned_cols=54 Identities=13% Similarity=0.067 Sum_probs=46.5
Q ss_pred CeEEEEEeCCC-cchHHHHHHHHHHHHHHc--CCCeeEEEeccCCChhHHhhhhhhh
Q 014387 223 GRYICLYGGED-MDWIRKFTTATNAVAKTA--GIPLGMVYVGKSNPKDRVRRNNDTI 276 (425)
Q Consensus 223 gk~I~lY~g~d-~~w~r~FT~~l~~~~k~~--~~~~Eiv~Vs~d~~~e~f~~~~~~i 276 (425)
||++.|||.+. |++|+++.+.|.++.+.. +..+++|+||.|.+++.++++++..
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~ 57 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKN 57 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTC
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhc
Confidence 79999999888 999999999999996554 5999999999999999999988665
No 113
>PTZ00102 disulphide isomerase; Provisional
Probab=97.93 E-value=4.1e-05 Score=80.16 Aligned_cols=69 Identities=14% Similarity=0.107 Sum_probs=50.0
Q ss_pred CCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCc
Q 014387 62 RRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPS 139 (425)
Q Consensus 62 kGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~ 139 (425)
.||.|+|+|||+||++|+.+. +.++.+.+++ ...+-++.|.. +...
T Consensus 374 ~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~-----~~~v~~~~id~--------~~~~------------------- 421 (477)
T PTZ00102 374 SDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKD-----NDSIIVAKMNG--------TANE------------------- 421 (477)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHhcc-----CCcEEEEEEEC--------CCCc-------------------
Confidence 579999999999999999987 7777777643 22455555542 1110
Q ss_pred ccChHHHHHHHHhCCCCCCCeEEEECCCCcE
Q 014387 140 LIDRAVIQFIKEEWQFGKKPILVVLDPHGKV 170 (425)
Q Consensus 140 l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkV 170 (425)
.+.+.|+++++|+++++++.|++
T Consensus 422 --------~~~~~~~v~~~Pt~~~~~~~~~~ 444 (477)
T PTZ00102 422 --------TPLEEFSWSAFPTILFVKAGERT 444 (477)
T ss_pred --------cchhcCCCcccCeEEEEECCCcc
Confidence 12346788999999999988775
No 114
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.88 E-value=6.1e-05 Score=59.04 Aligned_cols=63 Identities=22% Similarity=0.238 Sum_probs=45.7
Q ss_pred CEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCccc
Q 014387 64 KMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPSLI 141 (425)
Q Consensus 64 K~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~l~ 141 (425)
+.++|+|+++||++|+... |.++.++ . .++.++.|.+ +.
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~-------~~~~~~~i~~--------~~----------------------- 51 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEE-Y-------PKVKFVKVDV--------DE----------------------- 51 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHH-C-------CCceEEEEEC--------CC-----------------------
Confidence 8999999999999999877 6666555 1 2577777763 11
Q ss_pred ChHHHHHHHHhCCCCCCCeEEEECCCCcE
Q 014387 142 DRAVIQFIKEEWQFGKKPILVVLDPHGKV 170 (425)
Q Consensus 142 D~~~~~~L~~~f~v~~iPtlVvLD~~GkV 170 (425)
...+.+.|++.+.|++++++ +|++
T Consensus 52 ----~~~~~~~~~v~~~P~~~~~~-~g~~ 75 (93)
T cd02947 52 ----NPELAEEYGVRSIPTFLFFK-NGKE 75 (93)
T ss_pred ----ChhHHHhcCcccccEEEEEE-CCEE
Confidence 01345578999999999985 5654
No 115
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.0001 Score=67.05 Aligned_cols=117 Identities=21% Similarity=0.267 Sum_probs=78.5
Q ss_pred cCCCCCeEeccccCCCEEEEEEecCCChHhHHHH-HHHHHHHHHhhhccCCCceEEEEEeccCC--CCCCchHHHHHHHH
Q 014387 49 DGATKTRVNLEVLRRKMVLLLISDLDISQEEVII-LEQLYSEARQHQTRHESQYEVVWLPIVDP--NMPWTDNKQKQFQS 125 (425)
Q Consensus 49 dg~~g~~V~ls~LkGK~VlL~FsAsWC~pCr~~~-L~~iY~~~k~~~~k~~~~fEIV~IsIvd~--s~~w~D~~~~~F~~ 125 (425)
.+.+|+.+++++++||+||+-=-||-|+-=-+.- |+.+|+++++ ++|+|+..|...= ..+=++++-..|=.
T Consensus 11 ~~~~G~~~~l~~~~GkVlLIVNtASkCGfTpQYegLe~Ly~ky~~------~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~ 84 (162)
T COG0386 11 KDIDGEPVSLSDYKGKVLLIVNTASKCGFTPQYEGLEALYKKYKD------KGFEVLGFPCNQFGGQEPGSDEEIAKFCQ 84 (162)
T ss_pred eccCCCCccHHHhCCcEEEEEEcccccCCcHhHHHHHHHHHHHhh------CCcEEEeccccccccCCCCCHHHHHHHHH
Confidence 4567889999999999999999999997666666 9999999986 4799999996420 01112333444533
Q ss_pred HHhCCCceeeccCccc--Ch------HHHHHHHHhCCC-------CCCCeEEEECCCCcEEccccc
Q 014387 126 LQSAMPWYTVYHPSLI--DR------AVIQFIKEEWQF-------GKKPILVVLDPHGKVVCPNAL 176 (425)
Q Consensus 126 ~~~~mPW~aV~~p~l~--D~------~~~~~L~~~f~v-------~~iPtlVvLD~~GkVv~~na~ 176 (425)
.. |.|.||.+. |. +.-+.|++.-.- +.-=+-++||++|+||.+-+-
T Consensus 85 ~~-----YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p 145 (162)
T COG0386 85 LN-----YGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSP 145 (162)
T ss_pred hc-----cCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCC
Confidence 22 566666431 11 233556654421 222367899999999987653
No 116
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.79 E-value=8.5e-05 Score=66.11 Aligned_cols=91 Identities=15% Similarity=0.191 Sum_probs=57.2
Q ss_pred CCCEEEEEEecCCChHhHHHH---H--HHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeec
Q 014387 62 RRKMVLLLISDLDISQEEVII---L--EQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVY 136 (425)
Q Consensus 62 kGK~VlL~FsAsWC~pCr~~~---L--~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~ 136 (425)
+||.|+|+|.+.||++|+..- + .++.+.++ ++| |.|.+.. +++| ...
T Consensus 22 ~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~-------~~F--v~V~l~~---d~td----------~~~------ 73 (130)
T cd02960 22 SNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQ-------EDF--IMLNLVH---ETTD----------KNL------ 73 (130)
T ss_pred CCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHH-------hCe--EEEEEEe---ccCC----------CCc------
Confidence 689999999999999999865 2 23444442 134 5444411 1111 000
Q ss_pred cCcccChHHHHHHHHhCCCCCCCeEEEECCCCcEEccccchhhhhcCCccCCCCchhHHHhhh
Q 014387 137 HPSLIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVCPNALHMMWIWGSLAYPFSTAREEALWR 199 (425)
Q Consensus 137 ~p~l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~~na~~~I~~~g~~aFPft~~~~~~L~~ 199 (425)
.+ .+ .++|+++++|++|+++.+- .--++...|-+.+.+.+.|..
T Consensus 74 -----~~---------~g-~~vPtivFld~~g~vi~~i----~Gy~~~~~~~y~~~~~~~~~~ 117 (130)
T cd02960 74 -----SP---------DG-QYVPRIMFVDPSLTVRADI----TGRYSNRLYTYEPADIPLLIE 117 (130)
T ss_pred -----Cc---------cC-cccCeEEEECCCCCCcccc----cccccCccceeCcCcHHHHHH
Confidence 00 11 3689999999999998643 333456677777877776654
No 117
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.77 E-value=7e-05 Score=79.42 Aligned_cols=67 Identities=21% Similarity=0.253 Sum_probs=49.4
Q ss_pred CCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCc
Q 014387 62 RRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPS 139 (425)
Q Consensus 62 kGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~ 139 (425)
++|.|+|+|||+||++|+... +.++.+++++ .++.++.|.+ |.+.
T Consensus 370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~------~~v~~~kVdv--------D~~~------------------- 416 (463)
T TIGR00424 370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLAG------SGVKVAKFRA--------DGDQ------------------- 416 (463)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc------CCcEEEEEEC--------CCCc-------------------
Confidence 689999999999999999987 8888888742 2466776654 2111
Q ss_pred ccChHHHHHHHHhCCCCCCCeEEEECCC
Q 014387 140 LIDRAVIQFIKEEWQFGKKPILVVLDPH 167 (425)
Q Consensus 140 l~D~~~~~~L~~~f~v~~iPtlVvLD~~ 167 (425)
...+.+.|+|+++||++++...
T Consensus 417 ------~~~~~~~~~I~~~PTii~Fk~g 438 (463)
T TIGR00424 417 ------KEFAKQELQLGSFPTILFFPKH 438 (463)
T ss_pred ------cHHHHHHcCCCccceEEEEECC
Confidence 0123457899999999999654
No 118
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=97.75 E-value=0.00013 Score=62.33 Aligned_cols=73 Identities=19% Similarity=0.316 Sum_probs=49.3
Q ss_pred cCCCEEEEEEecCCChHhHHHH---H--HHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceee
Q 014387 61 LRRKMVLLLISDLDISQEEVII---L--EQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTV 135 (425)
Q Consensus 61 LkGK~VlL~FsAsWC~pCr~~~---L--~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV 135 (425)
=++|.|+|||.+.||++|+.+. | .++.+.+++ + .|++.+ | .++
T Consensus 15 ~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~-------~--~v~~~~-d----~~~------------------ 62 (114)
T cd02958 15 SEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE-------N--FIFWQC-D----IDS------------------ 62 (114)
T ss_pred hhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh-------C--EEEEEe-c----CCC------------------
Confidence 3589999999999999999875 2 234444432 2 333332 1 011
Q ss_pred ccCcccChHHHHHHHHhCCCCCCCeEEEECC-CCcEEcc
Q 014387 136 YHPSLIDRAVIQFIKEEWQFGKKPILVVLDP-HGKVVCP 173 (425)
Q Consensus 136 ~~p~l~D~~~~~~L~~~f~v~~iPtlVvLD~-~GkVv~~ 173 (425)
+++ ..+.+.|++.+.|++++||| +|+++.+
T Consensus 63 -------~e~-~~~~~~~~~~~~P~~~~i~~~~g~~l~~ 93 (114)
T cd02958 63 -------SEG-QRFLQSYKVDKYPHIAIIDPRTGEVLKV 93 (114)
T ss_pred -------ccH-HHHHHHhCccCCCeEEEEeCccCcEeEE
Confidence 011 24567788999999999999 8998763
No 119
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=97.73 E-value=0.00011 Score=58.06 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=27.7
Q ss_pred EEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEec
Q 014387 66 VLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPI 108 (425)
Q Consensus 66 VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsI 108 (425)
.+..||++||++|+... |.++.++++. +++++.|.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~-------~~~~~~vd~ 39 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD-------AVEVEYINV 39 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC-------ceEEEEEeC
Confidence 45679999999999877 8888887732 477777763
No 120
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.64 E-value=0.00025 Score=66.96 Aligned_cols=87 Identities=14% Similarity=0.134 Sum_probs=56.8
Q ss_pred CCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCc
Q 014387 62 RRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPS 139 (425)
Q Consensus 62 kGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~ 139 (425)
+++.|+|+|||+||+||+... |.++-.++. ...++-|.+ +.
T Consensus 101 ~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~--------~vkFvkI~a--------d~--------------------- 143 (192)
T cd02988 101 KDTWVVVHLYKDGIPLCRLLNQHLSELARKFP--------DTKFVKIIS--------TQ--------------------- 143 (192)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHCC--------CCEEEEEEh--------HH---------------------
Confidence 356999999999999999876 777776652 233443331 11
Q ss_pred ccChHHHHHHHHhCCCCCCCeEEEECCCCcEEccccchhhhhcCCccCCCCchhHHHhhh
Q 014387 140 LIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVCPNALHMMWIWGSLAYPFSTAREEALWR 199 (425)
Q Consensus 140 l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~~na~~~I~~~g~~aFPft~~~~~~L~~ 199 (425)
..+.|+++++||++++ .+|+++..-. . ....|+. =|+....+.++.
T Consensus 144 ---------~~~~~~i~~lPTlliy-k~G~~v~~iv-G-~~~~gg~--~~~~~~lE~~L~ 189 (192)
T cd02988 144 ---------CIPNYPDKNLPTILVY-RNGDIVKQFI-G-LLEFGGM--NTTMEDLEWLLV 189 (192)
T ss_pred ---------hHhhCCCCCCCEEEEE-ECCEEEEEEe-C-chhhCCC--CCCHHHHHHHHH
Confidence 0145788999999988 6888875432 2 1234655 456666666553
No 121
>PTZ00102 disulphide isomerase; Provisional
Probab=97.58 E-value=0.00016 Score=75.63 Aligned_cols=70 Identities=11% Similarity=0.156 Sum_probs=50.8
Q ss_pred CCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCc
Q 014387 62 RRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPS 139 (425)
Q Consensus 62 kGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~ 139 (425)
+++.|+++|+|+||++|+... +.++.+.+++ . +..|++..+ | .+.
T Consensus 48 ~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~----~--~~~i~~~~v-d-----~~~--------------------- 94 (477)
T PTZ00102 48 ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKE----K--KSEIVLASV-D-----ATE--------------------- 94 (477)
T ss_pred cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHh----c--CCcEEEEEE-E-----CCC---------------------
Confidence 578999999999999999887 7788777753 1 234666653 1 111
Q ss_pred ccChHHHHHHHHhCCCCCCCeEEEECCCCcE
Q 014387 140 LIDRAVIQFIKEEWQFGKKPILVVLDPHGKV 170 (425)
Q Consensus 140 l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkV 170 (425)
...+.++|++.++|++++++..+.+
T Consensus 95 ------~~~l~~~~~i~~~Pt~~~~~~g~~~ 119 (477)
T PTZ00102 95 ------EMELAQEFGVRGYPTIKFFNKGNPV 119 (477)
T ss_pred ------CHHHHHhcCCCcccEEEEEECCceE
Confidence 1246778999999999999866544
No 122
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.52 E-value=0.00034 Score=72.39 Aligned_cols=69 Identities=12% Similarity=0.185 Sum_probs=48.3
Q ss_pred CCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCc
Q 014387 62 RRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPS 139 (425)
Q Consensus 62 kGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~ 139 (425)
++++++|+|||+||++|+.+. +.++.+.++. .+.+ |.++.+ | .+.
T Consensus 17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~----~~~~--v~~~~v-d-----~~~--------------------- 63 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKK----KGPP--IKLAKV-D-----ATE--------------------- 63 (462)
T ss_pred cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhh----cCCc--eEEEEE-E-----CCC---------------------
Confidence 568999999999999999987 8888888753 1123 444443 1 111
Q ss_pred ccChHHHHHHHHhCCCCCCCeEEEECCCCcE
Q 014387 140 LIDRAVIQFIKEEWQFGKKPILVVLDPHGKV 170 (425)
Q Consensus 140 l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkV 170 (425)
...+.+.|++.+.|+++++. +|+.
T Consensus 64 ------~~~l~~~~~i~~~Pt~~~~~-~g~~ 87 (462)
T TIGR01130 64 ------EKDLAQKYGVSGYPTLKIFR-NGED 87 (462)
T ss_pred ------cHHHHHhCCCccccEEEEEe-CCcc
Confidence 02466789999999998885 4443
No 123
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=97.51 E-value=0.00044 Score=56.99 Aligned_cols=62 Identities=18% Similarity=0.273 Sum_probs=48.2
Q ss_pred CCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCcc
Q 014387 63 RKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPSL 140 (425)
Q Consensus 63 GK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~l 140 (425)
|+.++++|++.||++|+... |.++-+++++ ++.+++|.+ |+ +
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~-------~v~f~~vd~--------~~----~----------------- 55 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKG-------KLLFVVVDA--------DD----F----------------- 55 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCC-------eEEEEEEch--------Hh----h-----------------
Confidence 88999999999999999877 8888888842 577777752 22 1
Q ss_pred cChHHHHHHHHhCCCC--CCCeEEEECC
Q 014387 141 IDRAVIQFIKEEWQFG--KKPILVVLDP 166 (425)
Q Consensus 141 ~D~~~~~~L~~~f~v~--~iPtlVvLD~ 166 (425)
..+.+.|++. ++|++++++.
T Consensus 56 ------~~~~~~~~i~~~~~P~~~~~~~ 77 (103)
T cd02982 56 ------GRHLEYFGLKEEDLPVIAIINL 77 (103)
T ss_pred ------HHHHHHcCCChhhCCEEEEEec
Confidence 1245567888 8999999986
No 124
>PLN02309 5'-adenylylsulfate reductase
Probab=97.45 E-value=0.00042 Score=73.50 Aligned_cols=67 Identities=22% Similarity=0.288 Sum_probs=46.8
Q ss_pred CCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCc
Q 014387 62 RRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPS 139 (425)
Q Consensus 62 kGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~ 139 (425)
++|+|+|+|+|+||++|+... +.++.++++. .++.|.-|.+ |.+..
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~------~~V~f~kVD~--------d~~~~------------------ 411 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAG------SGVKVAKFRA--------DGDQK------------------ 411 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc------CCeEEEEEEC--------CCcch------------------
Confidence 689999999999999999877 7777777742 2455555542 21100
Q ss_pred ccChHHHHHHHHhCCCCCCCeEEEECCC
Q 014387 140 LIDRAVIQFIKEEWQFGKKPILVVLDPH 167 (425)
Q Consensus 140 l~D~~~~~~L~~~f~v~~iPtlVvLD~~ 167 (425)
....+.|+|+++||++++.+.
T Consensus 412 -------~la~~~~~I~~~PTil~f~~g 432 (457)
T PLN02309 412 -------EFAKQELQLGSFPTILLFPKN 432 (457)
T ss_pred -------HHHHhhCCCceeeEEEEEeCC
Confidence 122346899999999999654
No 125
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.42 E-value=0.00053 Score=54.79 Aligned_cols=56 Identities=16% Similarity=0.124 Sum_probs=38.8
Q ss_pred EEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCcccChHH
Q 014387 68 LLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPSLIDRAV 145 (425)
Q Consensus 68 L~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~l~D~~~ 145 (425)
+.|+|+|||+|+... +.++-+++. ..++++-|. |.++
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~-------~~~~~~~v~---------~~~~------------------------- 41 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELG-------IDAEFEKVT---------DMNE------------------------- 41 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcC-------CCeEEEEeC---------CHHH-------------------------
Confidence 678999999999876 677666652 245554442 1110
Q ss_pred HHHHHHhCCCCCCCeEEEECCCCcEE
Q 014387 146 IQFIKEEWQFGKKPILVVLDPHGKVV 171 (425)
Q Consensus 146 ~~~L~~~f~v~~iPtlVvLD~~GkVv 171 (425)
...|++.++|++++ +|+++
T Consensus 42 ----a~~~~v~~vPti~i---~G~~~ 60 (76)
T TIGR00412 42 ----ILEAGVTATPGVAV---DGELV 60 (76)
T ss_pred ----HHHcCCCcCCEEEE---CCEEE
Confidence 23479999999998 88877
No 126
>smart00594 UAS UAS domain.
Probab=97.27 E-value=0.0014 Score=56.96 Aligned_cols=69 Identities=19% Similarity=0.357 Sum_probs=47.1
Q ss_pred ccCCCEEEEEEecCCChHhHHHH---H--HHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCcee
Q 014387 60 VLRRKMVLLLISDLDISQEEVII---L--EQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYT 134 (425)
Q Consensus 60 ~LkGK~VlL~FsAsWC~pCr~~~---L--~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~a 134 (425)
.=+||.++|||.+.||++|+.+. | .++.+-+++ + +|.+.. | +.+
T Consensus 24 k~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~-------~--fv~~~~-d----v~~----------------- 72 (122)
T smart00594 24 SRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE-------N--FIFWQV-D----VDT----------------- 72 (122)
T ss_pred HhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc-------C--EEEEEe-c----CCC-----------------
Confidence 34689999999999999999876 2 234444421 2 444432 1 011
Q ss_pred eccCcccChHHHHHHHHhCCCCCCCeEEEECCCC
Q 014387 135 VYHPSLIDRAVIQFIKEEWQFGKKPILVVLDPHG 168 (425)
Q Consensus 135 V~~p~l~D~~~~~~L~~~f~v~~iPtlVvLD~~G 168 (425)
.++ ..+.+.|++.+.|+++++||+|
T Consensus 73 --------~eg-~~l~~~~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 73 --------SEG-QRVSQFYKLDSFPYVAIVDPRT 97 (122)
T ss_pred --------hhH-HHHHHhcCcCCCCEEEEEecCC
Confidence 112 3577889999999999999997
No 127
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=97.19 E-value=0.0021 Score=63.02 Aligned_cols=120 Identities=11% Similarity=0.111 Sum_probs=77.5
Q ss_pred CcccCCCCCeEeccccCCCEEEEEEecCCChH-hHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHH
Q 014387 46 PLVDGATKTRVNLEVLRRKMVLLLISDLDISQ-EEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQ 122 (425)
Q Consensus 46 pl~dg~~g~~V~ls~LkGK~VlL~FsAsWC~p-Cr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~ 122 (425)
..+...+|+.+.-.+|+||-++|||.-+-||. |-.++ |.+.-+++.+. .+-...=|||++ |+.-+ ..+.
T Consensus 122 F~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~---~~~~~~PlFIsv-DPeRD----~~~~ 193 (280)
T KOG2792|consen 122 FSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAK---PGLPPVPLFISV-DPERD----SVEV 193 (280)
T ss_pred eEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhcc---CCCCccceEEEe-CcccC----CHHH
Confidence 34566789999999999999999999999975 55555 99999988652 222333689986 43111 2333
Q ss_pred HHHHHhCCC--ceeeccCcccChHHHHHHHHhCCCCCC--C-------------eEEEECCCCcEEccccch
Q 014387 123 FQSLQSAMP--WYTVYHPSLIDRAVIQFIKEEWQFGKK--P-------------ILVVLDPHGKVVCPNALH 177 (425)
Q Consensus 123 F~~~~~~mP--W~aV~~p~l~D~~~~~~L~~~f~v~~i--P-------------tlVvLD~~GkVv~~na~~ 177 (425)
..+|.+++. =+.+. .-.+.++.+++.|+|--- | ..++|||+|+.+.--|+.
T Consensus 194 ~~eY~~eF~pkllGLT----GT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN 261 (280)
T KOG2792|consen 194 VAEYVSEFHPKLLGLT----GTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRN 261 (280)
T ss_pred HHHHHHhcChhhhccc----CCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhccc
Confidence 444444321 12222 122446778888887322 3 357999999998655543
No 128
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.15 E-value=0.00095 Score=69.04 Aligned_cols=43 Identities=16% Similarity=0.085 Sum_probs=33.5
Q ss_pred CCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEec
Q 014387 62 RRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPI 108 (425)
Q Consensus 62 kGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsI 108 (425)
.++.|+|+|||+||++|+.+. +.++.+.++. . ..++.|+.|.+
T Consensus 363 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~---~-~~~i~~~~id~ 407 (462)
T TIGR01130 363 ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKD---A-ESDVVIAKMDA 407 (462)
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhc---C-CCcEEEEEEEC
Confidence 479999999999999999987 8888888753 1 22577777753
No 129
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.12 E-value=0.0011 Score=63.68 Aligned_cols=92 Identities=20% Similarity=0.241 Sum_probs=68.0
Q ss_pred eEeccccCCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCc
Q 014387 55 RVNLEVLRRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPW 132 (425)
Q Consensus 55 ~V~ls~LkGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW 132 (425)
.--+..+.+++=+++|..+.|+.|..+. |..+-+++ +++|+.||+ |. ..+|
T Consensus 112 ~~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y---------g~~v~~vs~--------DG---------~~~~- 164 (215)
T PF13728_consen 112 DKALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY---------GFSVIPVSL--------DG---------RPIP- 164 (215)
T ss_pred HHHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh---------CCEEEEEec--------CC---------CCCc-
Confidence 3445677889999999999999999998 88888777 599999996 22 1122
Q ss_pred eeeccCcc-cChHHHHHHHHhCCCCCCCeEEEECCCCcEEccccchhhh
Q 014387 133 YTVYHPSL-IDRAVIQFIKEEWQFGKKPILVVLDPHGKVVCPNALHMMW 180 (425)
Q Consensus 133 ~aV~~p~l-~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~~na~~~I~ 180 (425)
.||.. .| .-+.+.+++...|++++++++++...+=+.++|.
T Consensus 165 ---~fp~~~~~----~g~~~~l~v~~~Pal~Lv~~~~~~~~pv~~G~~s 206 (215)
T PF13728_consen 165 ---SFPNPRPD----PGQAKRLGVKVTPALFLVNPNTKKWYPVSQGFMS 206 (215)
T ss_pred ---CCCCCCCC----HHHHHHcCCCcCCEEEEEECCCCeEEEEeeecCC
Confidence 12221 13 2467789999999999999998666666655554
No 130
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.09 E-value=0.0014 Score=58.19 Aligned_cols=73 Identities=15% Similarity=0.194 Sum_probs=41.7
Q ss_pred ccCCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeecc
Q 014387 60 VLRRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYH 137 (425)
Q Consensus 60 ~LkGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~ 137 (425)
.+.++.-.|-|..+|||.|+.++ |.++-+... ++++=+|+ .|+..+..+ .|
T Consensus 38 ~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p--------~i~~~~i~--------rd~~~el~~-----------~~ 90 (129)
T PF14595_consen 38 SIQKPYNILVITETWCGDCARNVPVLAKIAEANP--------NIEVRIIL--------RDENKELMD-----------QY 90 (129)
T ss_dssp T--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T--------TEEEEEE---------HHHHHHHTT-----------TT
T ss_pred hcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC--------CCeEEEEE--------ecCChhHHH-----------HH
Confidence 45566788889999999999999 888877641 47777776 354443211 11
Q ss_pred CcccChHHHHHHHHhCCCCCCCeEEEECCCCcEEc
Q 014387 138 PSLIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVC 172 (425)
Q Consensus 138 p~l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~ 172 (425)
+. .+...||++|++|.+|+++.
T Consensus 91 -----------lt--~g~~~IP~~I~~d~~~~~lg 112 (129)
T PF14595_consen 91 -----------LT--NGGRSIPTFIFLDKDGKELG 112 (129)
T ss_dssp -----------TT---SS--SSEEEEE-TT--EEE
T ss_pred -----------Hh--CCCeecCEEEEEcCCCCEeE
Confidence 11 46778999999999998864
No 131
>PHA02125 thioredoxin-like protein
Probab=97.03 E-value=0.0019 Score=51.31 Aligned_cols=16 Identities=6% Similarity=0.032 Sum_probs=14.0
Q ss_pred EEEEecCCChHhHHHH
Q 014387 67 LLLISDLDISQEEVII 82 (425)
Q Consensus 67 lL~FsAsWC~pCr~~~ 82 (425)
+++|+|+||+||+...
T Consensus 2 iv~f~a~wC~~Ck~~~ 17 (75)
T PHA02125 2 IYLFGAEWCANCKMVK 17 (75)
T ss_pred EEEEECCCCHhHHHHH
Confidence 5789999999999754
No 132
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.03 E-value=0.0031 Score=44.53 Aligned_cols=61 Identities=18% Similarity=0.196 Sum_probs=41.6
Q ss_pred EEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCcccChH
Q 014387 67 LLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPSLIDRA 144 (425)
Q Consensus 67 lL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~l~D~~ 144 (425)
+++|++.||++|+... |.++ +. ...++.++.+++.+ ......+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~------~~~~~~~~~~~~~~------~~~~~~~--------------------- 45 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--AL------LNKGVKFEAVDVDE------DPALEKE--------------------- 45 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--Hh------hCCCcEEEEEEcCC------ChHHhhH---------------------
Confidence 4789999999999988 6666 22 13478999998521 1111111
Q ss_pred HHHHHHHhCCCCCCCeEEEECCC
Q 014387 145 VIQFIKEEWQFGKKPILVVLDPH 167 (425)
Q Consensus 145 ~~~~L~~~f~v~~iPtlVvLD~~ 167 (425)
...+++...|++++++++
T Consensus 46 -----~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 46 -----LKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred -----HHhCCCccccEEEEEeCC
Confidence 245677789999999876
No 133
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.01 E-value=0.0014 Score=52.22 Aligned_cols=47 Identities=26% Similarity=0.145 Sum_probs=37.5
Q ss_pred eEeccccCCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEec
Q 014387 55 RVNLEVLRRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPI 108 (425)
Q Consensus 55 ~V~ls~LkGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsI 108 (425)
......++++.|++.||+.||++|+..+ |.++.+++.. ...++.|.+
T Consensus 24 ~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-------~~~~~~i~~ 72 (127)
T COG0526 24 PLSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-------DVEVVAVNV 72 (127)
T ss_pred ceehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-------CcEEEEEEC
Confidence 3455556699999999999999999998 8888888742 577888774
No 134
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=96.96 E-value=0.003 Score=48.35 Aligned_cols=20 Identities=0% Similarity=-0.039 Sum_probs=15.3
Q ss_pred EEEEecCCChHhHHHH--HHHH
Q 014387 67 LLLISDLDISQEEVII--LEQL 86 (425)
Q Consensus 67 lL~FsAsWC~pCr~~~--L~~i 86 (425)
+..|+++|||+|+... |.++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l 24 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRI 24 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHH
Confidence 4679999999998765 4444
No 135
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.005 Score=57.40 Aligned_cols=133 Identities=21% Similarity=0.198 Sum_probs=82.1
Q ss_pred ccCCCCCeEeccccCCCEEEEEEecCCC-hHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHH
Q 014387 48 VDGATKTRVNLEVLRRKMVLLLISDLDI-SQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQ 124 (425)
Q Consensus 48 ~dg~~g~~V~ls~LkGK~VlL~FsAsWC-~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~ 124 (425)
++| .-+.+++++++||+|+|+|....- --|-.++ ..+.+.+++. -+-||+.+|. | +.-..-+|.
T Consensus 19 VdG-~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~------~n~eVig~S~-D-----S~fshlAW~ 85 (196)
T KOG0852|consen 19 VDG-EFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRK------LNTEVLGIST-D-----SVFSHLAWI 85 (196)
T ss_pred EcC-cceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHh------cCCeEEEEec-c-----chhhhhhHh
Confidence 455 346899999999999999987762 1233333 7788888864 3689999994 2 222233333
Q ss_pred HH-HhCCCceeeccCcccChHHHHHHHHhCCC----CCCC--eEEEECCCCcEEc--cccchhhh----hc-CCccCCCC
Q 014387 125 SL-QSAMPWYTVYHPSLIDRAVIQFIKEEWQF----GKKP--ILVVLDPHGKVVC--PNALHMMW----IW-GSLAYPFS 190 (425)
Q Consensus 125 ~~-~~~mPW~aV~~p~l~D~~~~~~L~~~f~v----~~iP--tlVvLD~~GkVv~--~na~~~I~----~~-g~~aFPft 190 (425)
.. .+..---.+..|.+.|. .+.|.+.|++ .|++ -+++||++|.+.. .|-+.... .- =..||-||
T Consensus 86 ntprk~gGlg~~~iPllsD~--~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRLvqAfQ~t 163 (196)
T KOG0852|consen 86 NTPRKQGGLGPLNIPLLSDL--NHEISRDYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDETLRLVQAFQFT 163 (196)
T ss_pred cCchhhCCcCccccceeecc--chhhHHhcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHHHHHHHHHHhhh
Confidence 21 11111122346666675 4689999998 4666 5999999997743 23222111 11 14677777
Q ss_pred chhHH
Q 014387 191 TAREE 195 (425)
Q Consensus 191 ~~~~~ 195 (425)
-...+
T Consensus 164 d~~ge 168 (196)
T KOG0852|consen 164 DEHGE 168 (196)
T ss_pred hccCc
Confidence 66555
No 136
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=96.90 E-value=0.0035 Score=54.16 Aligned_cols=55 Identities=16% Similarity=0.255 Sum_probs=47.3
Q ss_pred cCCCCCeEeccccCCCEEEEEEecCCChHhHHHH-HHHHHHHHHhhhccCCCceEEEEEecc
Q 014387 49 DGATKTRVNLEVLRRKMVLLLISDLDISQEEVII-LEQLYSEARQHQTRHESQYEVVWLPIV 109 (425)
Q Consensus 49 dg~~g~~V~ls~LkGK~VlL~FsAsWC~pCr~~~-L~~iY~~~k~~~~k~~~~fEIV~IsIv 109 (425)
...+|+.++++.+|||++++-=-||-|+-=.... |+++|+++++ ++|+|+..|..
T Consensus 7 ~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~qy~~L~~L~~ky~~------~gl~ILaFPcn 62 (108)
T PF00255_consen 7 KDIDGKPVSLSKYKGKVLLIVNVASKCGYTKQYKQLNELYEKYKD------KGLEILAFPCN 62 (108)
T ss_dssp EBTTSSEEEGGGGTTSEEEEEEEESSSTTHHHHHHHHHHHHHHGG------GTEEEEEEEBS
T ss_pred eCCCCCEECHHHcCCCEEEEEecccccCCccccHHHHHHHHHHhc------CCeEEEeeehH
Confidence 3457899999999999999999999997766555 9999999975 36999999974
No 137
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=96.90 E-value=0.0038 Score=51.65 Aligned_cols=70 Identities=13% Similarity=0.049 Sum_probs=47.3
Q ss_pred ccccCCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceee
Q 014387 58 LEVLRRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTV 135 (425)
Q Consensus 58 ls~LkGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV 135 (425)
+++|++.+-+..|.+.||++|..-. +.++-+.+ .++++..+.+ |.
T Consensus 7 ~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~--------~~i~~~~vd~--------~~----------------- 53 (89)
T cd03026 7 IRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLN--------PNIEHEMIDG--------AL----------------- 53 (89)
T ss_pred HHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHC--------CCceEEEEEh--------Hh-----------------
Confidence 4578999999999999999999754 44443322 1355555542 11
Q ss_pred ccCcccChHHHHHHHHhCCCCCCCeEEEECCCCcEEcc
Q 014387 136 YHPSLIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVCP 173 (425)
Q Consensus 136 ~~p~l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~~ 173 (425)
...++++|+|.++|++++ +|+++..
T Consensus 54 ----------~~e~a~~~~V~~vPt~vi---dG~~~~~ 78 (89)
T cd03026 54 ----------FQDEVEERGIMSVPAIFL---NGELFGF 78 (89)
T ss_pred ----------CHHHHHHcCCccCCEEEE---CCEEEEe
Confidence 013556899999999975 6887764
No 138
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=96.85 E-value=0.0031 Score=54.58 Aligned_cols=56 Identities=16% Similarity=0.213 Sum_probs=47.5
Q ss_pred ccCCeEEEEEeCCC-cchHHHHHHHHHHHHHH---cCCCeeEEEeccCCChhHHhhhhhh
Q 014387 220 MAEGRYICLYGGED-MDWIRKFTTATNAVAKT---AGIPLGMVYVGKSNPKDRVRRNNDT 275 (425)
Q Consensus 220 ~~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~---~~~~~Eiv~Vs~d~~~e~f~~~~~~ 275 (425)
...||++.|||.+. |++|++..+.+.+++++ .+..+++++|+-|.+++.++++++.
T Consensus 15 ~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~ 74 (131)
T cd03009 15 SLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSK 74 (131)
T ss_pred HhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHc
Confidence 46899999999888 99999999999988543 2358999999999999999887654
No 139
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=96.85 E-value=0.0023 Score=63.19 Aligned_cols=93 Identities=13% Similarity=0.186 Sum_probs=68.9
Q ss_pred eEeccccCCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCc
Q 014387 55 RVNLEVLRRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPW 132 (425)
Q Consensus 55 ~V~ls~LkGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW 132 (425)
+-.+..+.++.=+++|..+.||.|..+. |..+-+++ +++|+.||+ | .. .+|
T Consensus 142 ~~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~y---------gi~v~~VS~-D-------G~---------~~p- 194 (256)
T TIGR02739 142 EKAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY---------GISVIPISV-D-------GT---------LIP- 194 (256)
T ss_pred HHHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHh---------CCeEEEEec-C-------CC---------CCC-
Confidence 3456677889999999999999999999 88888887 599999996 2 21 111
Q ss_pred eeeccCcccChHHHHHHHHhCCCCCCCeEEEECCCCcEEccccchhhh
Q 014387 133 YTVYHPSLIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVCPNALHMMW 180 (425)
Q Consensus 133 ~aV~~p~l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~~na~~~I~ 180 (425)
++|.+. .| .-+++.+++...|++++++++.+...+=|.++|.
T Consensus 195 -~fp~~~-~d----~gqa~~l~v~~~Pal~Lv~~~t~~~~pv~~G~iS 236 (256)
T TIGR02739 195 -GLPNSR-SD----SGQAQHLGVKYFPALYLVNPKSQKMSPLAYGFIS 236 (256)
T ss_pred -CCCCcc-CC----hHHHHhcCCccCceEEEEECCCCcEEEEeeccCC
Confidence 112211 13 2467889999999999999997766666666664
No 140
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=96.77 E-value=0.0034 Score=54.73 Aligned_cols=58 Identities=16% Similarity=0.196 Sum_probs=47.7
Q ss_pred cccCCeEEEEEeCCC-cchHHHHHHHHHHHHHHc-C--CCeeEEEeccCCChhHHhhhhhhh
Q 014387 219 WMAEGRYICLYGGED-MDWIRKFTTATNAVAKTA-G--IPLGMVYVGKSNPKDRVRRNNDTI 276 (425)
Q Consensus 219 ~~~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~-~--~~~Eiv~Vs~d~~~e~f~~~~~~i 276 (425)
....||.+.|||.+. |++|++..+.+.+++++. + ..+++++|+-|.+.+.++++++..
T Consensus 13 ~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~ 74 (132)
T cd02964 13 SALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEM 74 (132)
T ss_pred HHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcC
Confidence 356899999999887 999999999999885432 2 479999999998888888877544
No 141
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0082 Score=61.98 Aligned_cols=153 Identities=14% Similarity=0.045 Sum_probs=85.8
Q ss_pred CCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCc
Q 014387 62 RRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPS 139 (425)
Q Consensus 62 kGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~ 139 (425)
.++.+++.|+|+||++|.... ..++-+.+++ ++-+..|| .
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~----------~~~~~~vd-------~--------------------- 87 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG----------KVKIGAVD-------C--------------------- 87 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcC----------ceEEEEeC-------c---------------------
Confidence 457999999999999999987 6666666531 33333222 1
Q ss_pred ccChHHHHHHHHhCCCCCCCeEEEECCCCcEEccccchhhhhcCCccCCCCchhHHHhhhhc-cc-ceeccccCCCcccc
Q 014387 140 LIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVCPNALHMMWIWGSLAYPFSTAREEALWREE-TW-RLELLVDGLDPVIL 217 (425)
Q Consensus 140 l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~~na~~~I~~~g~~aFPft~~~~~~L~~~~-~w-~~~ll~d~~d~~i~ 217 (425)
...+.+.+.|++++.||+.++.+..+++...+..-.. ..+.|-....+.....- .= ..++..++.+..+.
T Consensus 88 ----~~~~~~~~~y~i~gfPtl~~f~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~ 159 (383)
T KOG0191|consen 88 ----DEHKDLCEKYGIQGFPTLKVFRPGKKPIDYSGPRNAE----SLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVK 159 (383)
T ss_pred ----hhhHHHHHhcCCccCcEEEEEcCCCceeeccCcccHH----HHHHHHHHhhccccccccCCceEEccccchhhhhh
Confidence 1223577889999999999999885566544411110 01111000000000000 00 11223322222221
Q ss_pred ccccCCeEEEEEeCCC-cchHHHHHHHHHHHHHHc--CCCeeEEEeccC
Q 014387 218 NWMAEGRYICLYGGED-MDWIRKFTTATNAVAKTA--GIPLGMVYVGKS 263 (425)
Q Consensus 218 ~~~~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~--~~~~Eiv~Vs~d 263 (425)
...+...|-+| +- |..||.+.+...++++.. +..+++.-+..+
T Consensus 160 -~~~~~~lv~f~--aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~ 205 (383)
T KOG0191|consen 160 -DSDADWLVEFY--APWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT 205 (383)
T ss_pred -ccCcceEEEEe--ccccHHhhhcChHHHHHHHHhccCcceEEEeeccc
Confidence 23455566664 55 888999988888886643 577777777665
No 142
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=96.71 E-value=0.0083 Score=48.18 Aligned_cols=22 Identities=14% Similarity=-0.135 Sum_probs=20.0
Q ss_pred cCCCEEEEEEecCCChHhHHHH
Q 014387 61 LRRKMVLLLISDLDISQEEVII 82 (425)
Q Consensus 61 LkGK~VlL~FsAsWC~pCr~~~ 82 (425)
-+||.|+|+|+|.||++|+.+-
T Consensus 15 ~~~kpvlv~f~a~wC~~C~~l~ 36 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPPCKKLE 36 (82)
T ss_dssp HHTSEEEEEEETTTTHHHHHHH
T ss_pred HcCCCEEEEEECCCCHhHHHHH
Confidence 3689999999999999999976
No 143
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=96.68 E-value=0.0051 Score=58.49 Aligned_cols=24 Identities=4% Similarity=-0.017 Sum_probs=18.7
Q ss_pred cccCCCEEEEEEecCCChHhHHHH
Q 014387 59 EVLRRKMVLLLISDLDISQEEVII 82 (425)
Q Consensus 59 s~LkGK~VlL~FsAsWC~pCr~~~ 82 (425)
..+++-++++.|||+||++|+...
T Consensus 129 ~~~~~pv~I~~F~a~~C~~C~~~~ 152 (215)
T TIGR02187 129 QSLDEPVRIEVFVTPTCPYCPYAV 152 (215)
T ss_pred HhcCCCcEEEEEECCCCCCcHHHH
Confidence 345666777779999999999644
No 144
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.015 Score=53.72 Aligned_cols=119 Identities=19% Similarity=0.257 Sum_probs=75.2
Q ss_pred cCCCCCeEeccccCCCEEEEEEecCCChHhH-HHH-HHHHHHHHHhhhccCCCceEEEEEeccCC--CCCCchHHHHHHH
Q 014387 49 DGATKTRVNLEVLRRKMVLLLISDLDISQEE-VII-LEQLYSEARQHQTRHESQYEVVWLPIVDP--NMPWTDNKQKQFQ 124 (425)
Q Consensus 49 dg~~g~~V~ls~LkGK~VlL~FsAsWC~pCr-~~~-L~~iY~~~k~~~~k~~~~fEIV~IsIvd~--s~~w~D~~~~~F~ 124 (425)
.+.+|+.|+++.+|||+||+-=-||-|+-=. ..+ |..+|+++++ .+|+|+..|..-- ..+-++.+-..|-
T Consensus 20 ~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~------~Gl~ILaFPCNQFg~QEp~~n~Ei~~f~ 93 (171)
T KOG1651|consen 20 KDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKD------QGLEILAFPCNQFGNQEPGSNEEILNFV 93 (171)
T ss_pred ecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhh------CCeEEEEeccccccCcCCCCcHHHHHHH
Confidence 4567899999999999999999999998766 666 9999999975 4799999997410 0011233444554
Q ss_pred H--HHhCCCcee---eccCcccChHHHHHHHHhCC------CCCCCeEEEECCCCcEEcccc
Q 014387 125 S--LQSAMPWYT---VYHPSLIDRAVIQFIKEEWQ------FGKKPILVVLDPHGKVVCPNA 175 (425)
Q Consensus 125 ~--~~~~mPW~a---V~~p~l~D~~~~~~L~~~f~------v~~iPtlVvLD~~GkVv~~na 175 (425)
. +....|-+. |.-.. .+ +.-+.|+..=+ ++--=+-+++|++|+|+.+-+
T Consensus 94 ~~r~~~~f~if~KidVNG~~-~~-PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ 153 (171)
T KOG1651|consen 94 KVRYGAEFPIFQKIDVNGDN-AD-PLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFS 153 (171)
T ss_pred HhccCCCCccEeEEecCCCC-Cc-hHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeC
Confidence 3 233333221 11100 01 23455553222 122226789999999987644
No 145
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=96.62 E-value=0.0036 Score=61.49 Aligned_cols=92 Identities=13% Similarity=0.153 Sum_probs=67.0
Q ss_pred EeccccCCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCce
Q 014387 56 VNLEVLRRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWY 133 (425)
Q Consensus 56 V~ls~LkGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~ 133 (425)
--+..|.+++=+++|..+.||.|..+. |..+-+++ +++|+.||+ |.. ..|
T Consensus 136 ~~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y---------g~~v~~VS~--------DG~---------~~p-- 187 (248)
T PRK13703 136 QAIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY---------GLSVIPVSV--------DGV---------INP-- 187 (248)
T ss_pred HHHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHh---------CCeEEEEec--------CCC---------CCC--
Confidence 346677888999999999999999999 88888887 599999996 221 112
Q ss_pred eeccCcccChHHHHHHHHhCCCCCCCeEEEECCCCcEEccccchhhh
Q 014387 134 TVYHPSLIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVCPNALHMMW 180 (425)
Q Consensus 134 aV~~p~l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~~na~~~I~ 180 (425)
.+|.+. .|. -..+.+++...|++++++++.+-..+=|.++|.
T Consensus 188 ~fp~~~-~d~----gqa~~l~v~~~PAl~Lv~~~t~~~~pv~~G~iS 229 (248)
T PRK13703 188 LLPDSR-TDQ----GQAQRLGVKYFPALMLVDPKSGSVRPLSYGFIT 229 (248)
T ss_pred CCCCCc-cCh----hHHHhcCCcccceEEEEECCCCcEEEEeeccCC
Confidence 112211 232 344789999999999999987666666666654
No 146
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=96.41 E-value=0.016 Score=50.92 Aligned_cols=78 Identities=14% Similarity=0.248 Sum_probs=41.7
Q ss_pred CCCEEEEEEecC-------CChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCc
Q 014387 62 RRKMVLLLISDL-------DISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPW 132 (425)
Q Consensus 62 kGK~VlL~FsAs-------WC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW 132 (425)
.|+.+.|+|.++ |||.|+... +.+.+.+.. ++.-+|.|.+ .++ ..|+. |
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~-------~~~~lv~v~V-------G~r--~~Wkd-----p- 75 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAP-------ENARLVYVEV-------GDR--PEWKD-----P- 75 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-S-------TTEEEEEEE----------H--HHHC------T-
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCC-------CCceEEEEEc-------CCH--HHhCC-----C-
Confidence 456777777754 999999987 777776642 2456666664 222 33322 0
Q ss_pred eeeccCcccChHHHHHHHHhCCCCCCCeEEEECCCCcEEc
Q 014387 133 YTVYHPSLIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVC 172 (425)
Q Consensus 133 ~aV~~p~l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~ 172 (425)
.. +- .--..|++++||||+-.+..++++.
T Consensus 76 ---~n------~f--R~~p~~~l~~IPTLi~~~~~~rL~e 104 (119)
T PF06110_consen 76 ---NN------PF--RTDPDLKLKGIPTLIRWETGERLVE 104 (119)
T ss_dssp ---TS------HH--HH--CC---SSSEEEECTSS-EEEH
T ss_pred ---CC------Cc--eEcceeeeeecceEEEECCCCccch
Confidence 00 00 1112589999999999987776553
No 147
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=96.38 E-value=0.0045 Score=54.13 Aligned_cols=45 Identities=16% Similarity=0.286 Sum_probs=38.4
Q ss_pred cccCCeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEeccCCC
Q 014387 219 WMAEGRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGKSNP 265 (425)
Q Consensus 219 ~~~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~ 265 (425)
.+..|+.+.+|||+. |||||.|.|.|.+++++ .+..++||..|.+
T Consensus 19 ~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd~~ 64 (122)
T TIGR01295 19 ALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSENN 64 (122)
T ss_pred HHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECCCc
Confidence 357788999999999 99999999999999766 4577999998854
No 148
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.0062 Score=59.70 Aligned_cols=34 Identities=15% Similarity=0.075 Sum_probs=27.3
Q ss_pred ccccCCCEEEEEEecCCChHhHHHH--HHHHHHHHH
Q 014387 58 LEVLRRKMVLLLISDLDISQEEVII--LEQLYSEAR 91 (425)
Q Consensus 58 ls~LkGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k 91 (425)
++.--||.|++.|.|+||+||..-. ..++-++|.
T Consensus 16 ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp 51 (288)
T KOG0908|consen 16 LSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP 51 (288)
T ss_pred hhccCceEEEEEEEecccchHHhhhhHHHHhhhhCc
Confidence 3344569999999999999999876 777777773
No 149
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=95.99 E-value=0.015 Score=46.00 Aligned_cols=31 Identities=26% Similarity=0.237 Sum_probs=22.9
Q ss_pred EEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEe
Q 014387 68 LLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLP 107 (425)
Q Consensus 68 L~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~Is 107 (425)
+.|+++|||+|+... |.+++ +. ..|+++.|.
T Consensus 2 ~~f~~~~Cp~C~~~~~~L~~~~--i~-------~~~~~~~v~ 34 (84)
T TIGR02180 2 VVFSKSYCPYCKKAKEILAKLN--VK-------PAYEVVELD 34 (84)
T ss_pred EEEECCCChhHHHHHHHHHHcC--CC-------CCCEEEEee
Confidence 569999999999987 65544 21 248888876
No 150
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=95.49 E-value=0.025 Score=61.33 Aligned_cols=74 Identities=16% Similarity=0.060 Sum_probs=50.0
Q ss_pred CCCEEEEEEecCCChHhHHHH---HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccC
Q 014387 62 RRKMVLLLISDLDISQEEVII---LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHP 138 (425)
Q Consensus 62 kGK~VlL~FsAsWC~pCr~~~---L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p 138 (425)
++|.|+|+|.|.||..|+.+- +.+.-...+- -.+|.+=. ||+..+
T Consensus 473 ~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~--------~~~vlLqa-----DvT~~~------------------- 520 (569)
T COG4232 473 KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQAL--------QDVVLLQA-----DVTAND------------------- 520 (569)
T ss_pred CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhc--------CCeEEEEe-----eecCCC-------------------
Confidence 456999999999999999866 4433333221 12555432 244322
Q ss_pred cccChHHHHHHHHhCCCCCCCeEEEECCCCcEEc
Q 014387 139 SLIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVC 172 (425)
Q Consensus 139 ~l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~ 172 (425)
+.++.+-++|++-+.|++++.+++|+-..
T Consensus 521 -----p~~~~lLk~~~~~G~P~~~ff~~~g~e~~ 549 (569)
T COG4232 521 -----PAITALLKRLGVFGVPTYLFFGPQGSEPE 549 (569)
T ss_pred -----HHHHHHHHHcCCCCCCEEEEECCCCCcCc
Confidence 23456667899999999999999997644
No 151
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=95.47 E-value=0.11 Score=39.32 Aligned_cols=16 Identities=0% Similarity=-0.257 Sum_probs=13.3
Q ss_pred EEEEecCCChHhHHHH
Q 014387 67 LLLISDLDISQEEVII 82 (425)
Q Consensus 67 lL~FsAsWC~pCr~~~ 82 (425)
+..|+++|||+|+.-.
T Consensus 2 i~lf~~~~C~~C~~~~ 17 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAK 17 (74)
T ss_pred EEEEcCCCChhHHHHH
Confidence 3579999999999854
No 152
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=95.17 E-value=0.17 Score=38.99 Aligned_cols=16 Identities=0% Similarity=-0.103 Sum_probs=13.3
Q ss_pred EEEEecCCChHhHHHH
Q 014387 67 LLLISDLDISQEEVII 82 (425)
Q Consensus 67 lL~FsAsWC~pCr~~~ 82 (425)
+..||++|||+|+...
T Consensus 2 v~ly~~~~C~~C~~~~ 17 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLM 17 (77)
T ss_pred EEEEECCCChhHHHHH
Confidence 3469999999999864
No 153
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=0.087 Score=49.02 Aligned_cols=98 Identities=19% Similarity=0.216 Sum_probs=66.0
Q ss_pred CCCCCCCc--ccCCCCCeEeccccCCC-EEEEEEecCC-ChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCC
Q 014387 40 PKDDLLPL--VDGATKTRVNLEVLRRK-MVLLLISDLD-ISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNM 113 (425)
Q Consensus 40 ~k~~~~pl--~dg~~g~~V~ls~LkGK-~VlL~FsAsW-C~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~ 113 (425)
++++..|. +-+.+|+.++|-.+.|+ +|+|||.--. -|.|-... ..+-|++++. .+.||+.+|- |
T Consensus 64 ~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kk------a~aeV~GlS~-D--- 133 (211)
T KOG0855|consen 64 NKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKK------AGAEVIGLSG-D--- 133 (211)
T ss_pred ecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhh------cCceEEeecc-C---
Confidence 45666664 44578999999999885 8888887655 46788777 9999999974 4799999995 2
Q ss_pred CCchHHHHHHHHHHhCCCceeeccCcccChHHHHHHHHhCCCCC
Q 014387 114 PWTDNKQKQFQSLQSAMPWYTVYHPSLIDRAVIQFIKEEWQFGK 157 (425)
Q Consensus 114 ~w~D~~~~~F~~~~~~mPW~aV~~p~l~D~~~~~~L~~~f~v~~ 157 (425)
+-..++.|..- .++| |--+.|+. +.+...|+..+
T Consensus 134 --~s~sqKaF~sK-qnlP-----YhLLSDpk--~e~ik~lGa~k 167 (211)
T KOG0855|consen 134 --DSASQKAFASK-QNLP-----YHLLSDPK--NEVIKDLGAPK 167 (211)
T ss_pred --chHHHHHhhhh-ccCC-----eeeecCcc--hhHHHHhCCCC
Confidence 23456777653 2344 33334542 34555666544
No 154
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.67 E-value=0.088 Score=48.51 Aligned_cols=86 Identities=17% Similarity=0.285 Sum_probs=58.6
Q ss_pred ccCCCEEEEEEecCCChHhHHHH-----HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCcee
Q 014387 60 VLRRKMVLLLISDLDISQEEVII-----LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYT 134 (425)
Q Consensus 60 ~LkGK~VlL~FsAsWC~pCr~~~-----L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~a 134 (425)
.-.||+.+|-|....|+.|.++- -.++.+-+++ .|-++.+.+. +...-.|..--..
T Consensus 39 ~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~-------hf~~~~l~i~-------~skpv~f~~g~ke----- 99 (182)
T COG2143 39 SPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE-------HFSAYYLNIS-------YSKPVLFKVGDKE----- 99 (182)
T ss_pred CccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh-------CeEEEEEEec-------cCcceEeecCcee-----
Confidence 45789999999999999999876 3445555542 5888888862 2211111100000
Q ss_pred eccCcccChHHHHHHHHhCCCCCCCeEEEECCCCcEE
Q 014387 135 VYHPSLIDRAVIQFIKEEWQFGKKPILVVLDPHGKVV 171 (425)
Q Consensus 135 V~~p~l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv 171 (425)
.....+.|++.|++++.|++|+.|.+|+.+
T Consensus 100 -------e~~s~~ELa~kf~vrstPtfvFfdk~Gk~I 129 (182)
T COG2143 100 -------EKMSTEELAQKFAVRSTPTFVFFDKTGKTI 129 (182)
T ss_pred -------eeecHHHHHHHhccccCceEEEEcCCCCEE
Confidence 011235899999999999999999999876
No 155
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=94.37 E-value=0.28 Score=48.21 Aligned_cols=101 Identities=12% Similarity=0.183 Sum_probs=55.4
Q ss_pred CCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEec--cCCCC-C-----CchHH-HHHHHHHHhCC
Q 014387 62 RRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPI--VDPNM-P-----WTDNK-QKQFQSLQSAM 130 (425)
Q Consensus 62 kGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsI--vd~s~-~-----w~D~~-~~~F~~~~~~m 130 (425)
.+|+++..|+...||.|+.+- |.++.+. .+++|.++|+ ..+.+ . |...+ .+.++.+....
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~---------g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~ 186 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS---------GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASG 186 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc---------CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhh
Confidence 578999999999999999986 5543221 1466766663 22111 0 11111 22333332221
Q ss_pred CceeeccCcccChHH------HHHHHHhCCCCCCCeEEEECCCCcEE
Q 014387 131 PWYTVYHPSLIDRAV------IQFIKEEWQFGKKPILVVLDPHGKVV 171 (425)
Q Consensus 131 PW~aV~~p~l~D~~~------~~~L~~~f~v~~iPtlVvLD~~GkVv 171 (425)
.-..+..+.....+. ...+.+.++++|.|++|+.|.+|++.
T Consensus 187 ~~~~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~ 233 (251)
T PRK11657 187 GKLGLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQ 233 (251)
T ss_pred hccCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEE
Confidence 110001100001111 22577899999999999999999863
No 156
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=94.26 E-value=0.13 Score=43.97 Aligned_cols=54 Identities=9% Similarity=-0.060 Sum_probs=44.1
Q ss_pred ccCCeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEeccCCChhHHhhhhhh
Q 014387 220 MAEGRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGKSNPKDRVRRNNDT 275 (425)
Q Consensus 220 ~~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~~e~f~~~~~~ 275 (425)
...||.+.|||-+. |++|++..+.+.++.+.. .+.++.|+.+.+.+..+++++.
T Consensus 22 ~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~--~~~vv~v~~~~~~~~~~~~~~~ 76 (127)
T cd03010 22 DLKGKPYLLNVWASWCAPCREEHPVLMALARQG--RVPIYGINYKDNPENALAWLAR 76 (127)
T ss_pred HcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc--CcEEEEEECCCCHHHHHHHHHh
Confidence 45789888888766 999999999999986553 4999999988888888876643
No 157
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=94.05 E-value=0.19 Score=40.58 Aligned_cols=49 Identities=12% Similarity=0.088 Sum_probs=40.4
Q ss_pred CeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEeccCCChhHHhh
Q 014387 223 GRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGKSNPKDRVRR 271 (425)
Q Consensus 223 gk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~~e~f~~ 271 (425)
++.+.+||.++ |++|+.|.+.+.++++..+.++.++.|..+...+-.++
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~ 66 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKK 66 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHH
T ss_pred CCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhc
Confidence 78888899888 99999999999999877666889999988865444443
No 158
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=93.85 E-value=0.14 Score=46.92 Aligned_cols=52 Identities=17% Similarity=0.048 Sum_probs=41.7
Q ss_pred cCCeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEeccCCChhHHhhhhhh
Q 014387 221 AEGRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGKSNPKDRVRRNNDT 275 (425)
Q Consensus 221 ~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~~e~f~~~~~~ 275 (425)
..||.+.|||.++ |++|+.+.+.+.++.+. .++++.|+.+.+.++.+++++.
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~ 113 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKE 113 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHH
Confidence 4789999999888 99999999999888542 5999999987666666665543
No 159
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=93.52 E-value=0.17 Score=44.55 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=34.7
Q ss_pred ccCCeEEEEEeCCC-cchHHHHHHHH---HHHHHHcCCCeeEEEeccCC
Q 014387 220 MAEGRYICLYGGED-MDWIRKFTTAT---NAVAKTAGIPLGMVYVGKSN 264 (425)
Q Consensus 220 ~~egk~I~lY~g~d-~~w~r~FT~~l---~~~~k~~~~~~Eiv~Vs~d~ 264 (425)
..++|.|+|+|+++ |+|||.+-... .++++.....|-.|.|..+.
T Consensus 12 k~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~ 60 (124)
T cd02955 12 RREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREE 60 (124)
T ss_pred HHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCc
Confidence 46899999999999 99999987632 34555556688888887654
No 160
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=93.40 E-value=0.22 Score=44.74 Aligned_cols=55 Identities=11% Similarity=-0.023 Sum_probs=45.4
Q ss_pred cCCeEEEEEeCCC-cchHHHHHHHHHHHHHH-cCCCeeEEEeccCCChhHHhhhhhh
Q 014387 221 AEGRYICLYGGED-MDWIRKFTTATNAVAKT-AGIPLGMVYVGKSNPKDRVRRNNDT 275 (425)
Q Consensus 221 ~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~-~~~~~Eiv~Vs~d~~~e~f~~~~~~ 275 (425)
.+||.+.|||-+. |++|++..+.+.++.++ .+.++.++.|+.|.+.+..+++++.
T Consensus 59 ~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~ 115 (173)
T PRK03147 59 LKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNR 115 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHH
Confidence 5788888888776 99999999999999655 3456999999999888877776644
No 161
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=93.30 E-value=0.2 Score=41.46 Aligned_cols=45 Identities=9% Similarity=0.003 Sum_probs=33.6
Q ss_pred ccCCeEEEEEeCCC-cchHHHHHHHH---HHHHHHcCCCeeEEEeccCC
Q 014387 220 MAEGRYICLYGGED-MDWIRKFTTAT---NAVAKTAGIPLGMVYVGKSN 264 (425)
Q Consensus 220 ~~egk~I~lY~g~d-~~w~r~FT~~l---~~~~k~~~~~~Eiv~Vs~d~ 264 (425)
+.+||.+.|||+++ |+||+.+.+.+ .++++..+..+.++.|.-+.
T Consensus 8 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~ 56 (104)
T cd02953 8 LAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTK 56 (104)
T ss_pred HHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCC
Confidence 46889999999999 99999999876 34544333377777776543
No 162
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=93.28 E-value=0.24 Score=41.27 Aligned_cols=54 Identities=17% Similarity=0.108 Sum_probs=40.9
Q ss_pred CCeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEeccCCChhHHhhhhhhh
Q 014387 222 EGRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGKSNPKDRVRRNNDTI 276 (425)
Q Consensus 222 egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~~e~f~~~~~~i 276 (425)
+||.+.|||-+. |++|++..+.+.++.+.....+.++.|+ +.+.+..+++++..
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~-~~~~~~~~~~~~~~ 74 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLAS-DGEKAEHQRFLKKH 74 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEe-CCCHHHHHHHHHHh
Confidence 588888888665 9999999999998865545568888776 55667777666543
No 163
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=93.28 E-value=0.42 Score=44.32 Aligned_cols=78 Identities=15% Similarity=0.157 Sum_probs=36.8
Q ss_pred cCCCEEEEEEecCCChHhHHHH-----HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceee
Q 014387 61 LRRKMVLLLISDLDISQEEVII-----LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTV 135 (425)
Q Consensus 61 LkGK~VlL~FsAsWC~pCr~~~-----L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV 135 (425)
-.+|.|+|.+.++||..|.... =.++-+-+++ + +|-|=+ |+ |+. ...+.
T Consensus 35 ~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~-------~--FI~Vkv-Dr-----ee~-Pdid~---------- 88 (163)
T PF03190_consen 35 KENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR-------N--FIPVKV-DR-----EER-PDIDK---------- 88 (163)
T ss_dssp HHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH-------H---EEEEE-ET-----TT--HHHHH----------
T ss_pred hcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC-------C--EEEEEe-cc-----ccC-ccHHH----------
Confidence 3579999999999999999644 2233333322 2 233321 21 211 11111
Q ss_pred ccCcccChHHHHHHHHhCCCCCCCeEEEECCCCcEEc
Q 014387 136 YHPSLIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVC 172 (425)
Q Consensus 136 ~~p~l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~ 172 (425)
..........+..|-|+.|+++|+|+.+.
T Consensus 89 --------~y~~~~~~~~~~gGwPl~vfltPdg~p~~ 117 (163)
T PF03190_consen 89 --------IYMNAVQAMSGSGGWPLTVFLTPDGKPFF 117 (163)
T ss_dssp --------HHHHHHHHHHS---SSEEEEE-TTS-EEE
T ss_pred --------HHHHHHHHhcCCCCCCceEEECCCCCeee
Confidence 11112223347779999999999999975
No 164
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=93.22 E-value=0.28 Score=40.22 Aligned_cols=45 Identities=13% Similarity=0.048 Sum_probs=36.5
Q ss_pred cCCeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEeccCCC
Q 014387 221 AEGRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGKSNP 265 (425)
Q Consensus 221 ~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~ 265 (425)
..++.+.+||.+. |++|+.+.+.+.+++++.+..+.++.|.-|.+
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~ 56 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDED 56 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCC
Confidence 4788899999877 99999999999999777666677777776644
No 165
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=93.20 E-value=0.72 Score=43.02 Aligned_cols=98 Identities=17% Similarity=0.175 Sum_probs=51.9
Q ss_pred CCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCC-------CCchH-HHHHHHHHHhCCC
Q 014387 62 RRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNM-------PWTDN-KQKQFQSLQSAMP 131 (425)
Q Consensus 62 kGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~-------~w~D~-~~~~F~~~~~~mP 131 (425)
.+|+++..|+...||.|+.+. |.+ . ..+-.+.++.+|+...+. -|... ..+.|.++....+
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~----~-----~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~ 146 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP----N-----ADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGK 146 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh----c-----cCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCC
Confidence 478999999999999999987 544 1 112234444555432100 01111 1233433332221
Q ss_pred ceeeccCcc-cChHHHHHHHHhCCCCCCCeEEEECCCCcEE
Q 014387 132 WYTVYHPSL-IDRAVIQFIKEEWQFGKKPILVVLDPHGKVV 171 (425)
Q Consensus 132 W~aV~~p~l-~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv 171 (425)
=. -+.... .+......+.+.+++++.|++++ ++|+++
T Consensus 147 ~~-~~~~~~~~~i~~~~~l~~~~gi~gtPtii~--~~G~~~ 184 (197)
T cd03020 147 VP-PPAASCDNPVAANLALGRQLGVNGTPTIVL--ADGRVV 184 (197)
T ss_pred CC-CCccccCchHHHHHHHHHHcCCCcccEEEE--CCCeEe
Confidence 00 011000 11223347889999999999984 347764
No 166
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=93.05 E-value=0.23 Score=44.33 Aligned_cols=45 Identities=11% Similarity=0.136 Sum_probs=38.3
Q ss_pred ccCCeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEeccCC
Q 014387 220 MAEGRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGKSN 264 (425)
Q Consensus 220 ~~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~ 264 (425)
...||.+.|||.+. |++|+.+.+.+.++++..+..+.++.|.-|.
T Consensus 17 ~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~ 62 (142)
T cd02950 17 LSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDN 62 (142)
T ss_pred HhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCC
Confidence 46899999999998 9999999999999977666668888887664
No 167
>PRK10996 thioredoxin 2; Provisional
Probab=92.99 E-value=0.27 Score=43.66 Aligned_cols=45 Identities=13% Similarity=0.037 Sum_probs=37.2
Q ss_pred ccCCeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEeccCC
Q 014387 220 MAEGRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGKSN 264 (425)
Q Consensus 220 ~~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~ 264 (425)
+.+++.+.|||.++ |++|+.+.+.+.+++++.+..+.++-|..+.
T Consensus 49 i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~ 94 (139)
T PRK10996 49 LQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEA 94 (139)
T ss_pred HhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Confidence 46789999999999 9999999999999987766667776675554
No 168
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=92.98 E-value=0.34 Score=38.99 Aligned_cols=57 Identities=14% Similarity=0.002 Sum_probs=44.8
Q ss_pred cCCeEEEEEeCCC-cchHHHHHHHHHHHHHHc-CCCeeEEEeccCCC-hhHHhhhhhhhh
Q 014387 221 AEGRYICLYGGED-MDWIRKFTTATNAVAKTA-GIPLGMVYVGKSNP-KDRVRRNNDTIA 277 (425)
Q Consensus 221 ~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~-~~~~Eiv~Vs~d~~-~e~f~~~~~~i~ 277 (425)
..||++.|+|.+. |++|+.+++.+.++.+.. +..+.++.|+.|.+ .+..+++++...
T Consensus 17 ~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~ 76 (116)
T cd02966 17 LKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYG 76 (116)
T ss_pred cCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcC
Confidence 3588888888776 999999999999986553 36789999999876 777777775543
No 169
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=92.82 E-value=0.29 Score=37.85 Aligned_cols=44 Identities=7% Similarity=-0.051 Sum_probs=34.0
Q ss_pred cCCeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEeccCCC
Q 014387 221 AEGRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGKSNP 265 (425)
Q Consensus 221 ~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~ 265 (425)
.+++.+.||+++. |++|+.+.+.+.++++. ...+.++.|.-++.
T Consensus 8 ~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~ 52 (93)
T cd02947 8 KSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDEN 52 (93)
T ss_pred hcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCC
Confidence 3446677777666 99999999999999766 67788888777653
No 170
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=92.78 E-value=0.49 Score=35.42 Aligned_cols=15 Identities=0% Similarity=-0.133 Sum_probs=13.1
Q ss_pred EEEecCCChHhHHHH
Q 014387 68 LLISDLDISQEEVII 82 (425)
Q Consensus 68 L~FsAsWC~pCr~~~ 82 (425)
+.|+..+||.|+...
T Consensus 2 ~vy~~~~C~~C~~~~ 16 (60)
T PF00462_consen 2 VVYTKPGCPYCKKAK 16 (60)
T ss_dssp EEEESTTSHHHHHHH
T ss_pred EEEEcCCCcCHHHHH
Confidence 568999999999876
No 171
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=92.73 E-value=0.26 Score=45.72 Aligned_cols=53 Identities=9% Similarity=0.022 Sum_probs=42.7
Q ss_pred cCCeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEeccCCChhHHhhhhhhh
Q 014387 221 AEGRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGKSNPKDRVRRNNDTI 276 (425)
Q Consensus 221 ~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~~e~f~~~~~~i 276 (425)
..||.+.|+|-+. |++|++..|.+.++.+ ..++++.|+-|.+.+..+++++..
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~---~~~~vi~v~~~~~~~~~~~~~~~~ 119 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSA---QGIRVVGMNYKDDRQKAISWLKEL 119 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHH---cCCEEEEEECCCCHHHHHHHHHHc
Confidence 3799999999777 9999999999988843 368999999877777777766543
No 172
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=92.73 E-value=0.34 Score=40.34 Aligned_cols=44 Identities=5% Similarity=-0.022 Sum_probs=35.6
Q ss_pred ccCCeEEEEEeCCC-cchHHHHHHHHHHHHHHcC-CCeeEEEeccC
Q 014387 220 MAEGRYICLYGGED-MDWIRKFTTATNAVAKTAG-IPLGMVYVGKS 263 (425)
Q Consensus 220 ~~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~-~~~Eiv~Vs~d 263 (425)
+..++.+.|||.+. |++||.+.+.+.+++++.+ ..+.++.|..|
T Consensus 14 i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d 59 (102)
T cd02948 14 LSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD 59 (102)
T ss_pred HccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC
Confidence 34688999999999 9999999999999876644 34677777766
No 173
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=92.71 E-value=0.37 Score=39.02 Aligned_cols=44 Identities=5% Similarity=-0.167 Sum_probs=36.1
Q ss_pred CCeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEeccCCC
Q 014387 222 EGRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGKSNP 265 (425)
Q Consensus 222 egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~ 265 (425)
.|+.+.|||.++ |++|+.+.+.+.++++..+..+-++.|.-++.
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~ 55 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQ 55 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCC
Confidence 478999999999 99999999999999776655677777766643
No 174
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=92.48 E-value=0.39 Score=39.44 Aligned_cols=47 Identities=9% Similarity=-0.012 Sum_probs=38.9
Q ss_pred ccCCeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEeccCCCh
Q 014387 220 MAEGRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGKSNPK 266 (425)
Q Consensus 220 ~~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~~ 266 (425)
+.+++.+.|+|.+. |++|+++.+.+.++++..+..+.+..|.-|...
T Consensus 15 v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~ 62 (101)
T cd03003 15 VNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDR 62 (101)
T ss_pred hcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccH
Confidence 45668888888777 999999999999998877767888888887543
No 175
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=92.47 E-value=0.4 Score=41.78 Aligned_cols=45 Identities=11% Similarity=0.039 Sum_probs=37.9
Q ss_pred CCeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEeccCCCh
Q 014387 222 EGRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGKSNPK 266 (425)
Q Consensus 222 egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~~ 266 (425)
.++.+.++|+|. |+|||.+.|.+.+++.+....+.++.|.-|...
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~ 58 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVP 58 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCH
Confidence 577899999999 999999999999998776656788888887543
No 176
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=92.32 E-value=0.34 Score=39.39 Aligned_cols=43 Identities=7% Similarity=-0.150 Sum_probs=34.0
Q ss_pred CCeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEeccCC
Q 014387 222 EGRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGKSN 264 (425)
Q Consensus 222 egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~ 264 (425)
.++.+.|||.+. |++||+|.+.+.++++.....+.++.+..+.
T Consensus 17 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~ 60 (103)
T cd03001 17 SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADV 60 (103)
T ss_pred CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcc
Confidence 456678888788 9999999999999977655667777776654
No 177
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=92.17 E-value=0.33 Score=42.02 Aligned_cols=56 Identities=11% Similarity=0.131 Sum_probs=41.5
Q ss_pred cCCeEEEEEeCCC-cch-HHHHHHHHHHHHHHcC----CCeeEEEeccCCC---hhHHhhhhhhh
Q 014387 221 AEGRYICLYGGED-MDW-IRKFTTATNAVAKTAG----IPLGMVYVGKSNP---KDRVRRNNDTI 276 (425)
Q Consensus 221 ~egk~I~lY~g~d-~~w-~r~FT~~l~~~~k~~~----~~~Eiv~Vs~d~~---~e~f~~~~~~i 276 (425)
..||++.|+|.+. |++ |+.-.+.|.++..+.+ ..+++++|+.|.. .+..+++++.+
T Consensus 20 ~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~~~ 84 (142)
T cd02968 20 LKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYAKAF 84 (142)
T ss_pred hCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 4789888888666 998 9999999999854432 3699999998753 35566655443
No 178
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=92.10 E-value=0.38 Score=38.09 Aligned_cols=45 Identities=7% Similarity=-0.020 Sum_probs=36.1
Q ss_pred ccCCeEEEEEeCCC-cchHHHHHHHHHHHHHHc--CCCeeEEEeccCC
Q 014387 220 MAEGRYICLYGGED-MDWIRKFTTATNAVAKTA--GIPLGMVYVGKSN 264 (425)
Q Consensus 220 ~~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~--~~~~Eiv~Vs~d~ 264 (425)
+.+++.+.++|.++ |++|+.+.+.+.++++.. +..+.++.|..+.
T Consensus 12 i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 59 (101)
T cd02961 12 VKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA 59 (101)
T ss_pred HhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc
Confidence 45666888888777 999999999999987665 6778888887664
No 179
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=91.71 E-value=0.45 Score=44.40 Aligned_cols=53 Identities=17% Similarity=0.147 Sum_probs=39.6
Q ss_pred ccCCeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEeccCCChhHHhhhhhh
Q 014387 220 MAEGRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGKSNPKDRVRRNNDT 275 (425)
Q Consensus 220 ~~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~~e~f~~~~~~ 275 (425)
...||.+.|||.+. |++|++..+.+.++.+.. .+.+++|+.| +.+..+++++.
T Consensus 71 ~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~--~~~vv~Is~~-~~~~~~~~~~~ 124 (189)
T TIGR02661 71 IAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE--ETDVVMISDG-TPAEHRRFLKD 124 (189)
T ss_pred hcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc--CCcEEEEeCC-CHHHHHHHHHh
Confidence 45889888888777 999999999999886543 4678999855 45555555543
No 180
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.69 E-value=0.52 Score=45.71 Aligned_cols=162 Identities=10% Similarity=0.134 Sum_probs=86.7
Q ss_pred CCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCc
Q 014387 62 RRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPS 139 (425)
Q Consensus 62 kGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~ 139 (425)
+++.++++|||.||.+|.+-. +..+-+..+ +..++.+ +. +.|.
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~----------~~~~~k~--------~a--~~~~--------------- 60 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK----------NAQFLKL--------EA--EEFP--------------- 60 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh----------hheeeee--------hh--hhhh---------------
Confidence 789999999999999999865 444333332 2445543 22 2221
Q ss_pred ccChHHHHHHHHhCCCCCCCeEEEE-CC--CCcEEccccchhhhhcCC---ccC-CCCchhHHHhhh----hcccceecc
Q 014387 140 LIDRAVIQFIKEEWQFGKKPILVVL-DP--HGKVVCPNALHMMWIWGS---LAY-PFSTAREEALWR----EETWRLELL 208 (425)
Q Consensus 140 l~D~~~~~~L~~~f~v~~iPtlVvL-D~--~GkVv~~na~~~I~~~g~---~aF-Pft~~~~~~L~~----~~~w~~~ll 208 (425)
.|.+.+.+.+.|..+.+ .. -.++...+...++..+.. ... +.....-..+.+ +++
T Consensus 61 --------eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~------ 126 (227)
T KOG0911|consen 61 --------EISNLIAVEAVPYFVFFFLGEKVDRLSGADPPFLVSKVEKLAESGSASLGMGLSTTIRETQTTNET------ 126 (227)
T ss_pred --------HHHHHHHHhcCceeeeeecchhhhhhhccCcHHHHHHHHHhhhhcccccCCCCCcchhcccccchh------
Confidence 34455566667776665 21 134444454444443221 100 111111111111 100
Q ss_pred ccCCCccccccccCCeEEEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCCChhHHhhhhhhhh
Q 014387 209 VDGLDPVILNWMAEGRYICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSNPKDRVRRNNDTIA 277 (425)
Q Consensus 209 ~d~~d~~i~~~~~egk~I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~~e~f~~~~~~i~ 277 (425)
+ +|-.+...+...++..+-=|.--.|=-.|..++..+++..+.+++.+=|..| ++.|+.++...
T Consensus 127 -~-~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~D---eelRqglK~fS 190 (227)
T KOG0911|consen 127 -D-LDNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTD---EELRQGLKEFS 190 (227)
T ss_pred -h-HHHHHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCC---HHHHHHhhhhc
Confidence 1 2223333344444432222444334448999999999999999999999988 45777665544
No 181
>PHA02278 thioredoxin-like protein
Probab=91.59 E-value=0.44 Score=40.48 Aligned_cols=45 Identities=4% Similarity=0.053 Sum_probs=35.4
Q ss_pred ccCCeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEeccCC
Q 014387 220 MAEGRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGKSN 264 (425)
Q Consensus 220 ~~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~ 264 (425)
+.+++.+.+||.|+ |+|||.+.|.+.++++..+....++.|--|.
T Consensus 11 i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~ 56 (103)
T PHA02278 11 IRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDA 56 (103)
T ss_pred HhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCc
Confidence 35789999999999 9999999999999976534445566666553
No 182
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=91.47 E-value=0.64 Score=36.28 Aligned_cols=47 Identities=15% Similarity=0.197 Sum_probs=37.7
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCCChhHHhh
Q 014387 225 YICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSNPKDRVRR 271 (425)
Q Consensus 225 ~I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~~e~f~~ 271 (425)
.|-+|.+..|++|+...+.+.+++++.+..++++.|.-+.+.+..++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~ 48 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAME 48 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHH
Confidence 35678888899999999999999877677799999988766654443
No 183
>PRK09381 trxA thioredoxin; Provisional
Probab=91.40 E-value=0.55 Score=39.05 Aligned_cols=46 Identities=7% Similarity=-0.083 Sum_probs=37.3
Q ss_pred CCeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEeccCCChh
Q 014387 222 EGRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGKSNPKD 267 (425)
Q Consensus 222 egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~~e 267 (425)
.++.+.++|-+. |++|+.+.+.+.++++..+..+.++.|..|...+
T Consensus 20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~ 66 (109)
T PRK09381 20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG 66 (109)
T ss_pred CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChh
Confidence 467788888666 9999999999999987766678888888876543
No 184
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=91.33 E-value=0.48 Score=37.93 Aligned_cols=45 Identities=7% Similarity=-0.081 Sum_probs=36.2
Q ss_pred CCeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEeccCCCh
Q 014387 222 EGRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGKSNPK 266 (425)
Q Consensus 222 egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~~ 266 (425)
+++.+.|||.+. |+.|+.+.+.+.++++..+..+.++.|..++..
T Consensus 13 ~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~ 58 (101)
T TIGR01068 13 SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENP 58 (101)
T ss_pred cCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCH
Confidence 356777777666 999999999999997776767888888877554
No 185
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=91.03 E-value=0.65 Score=38.21 Aligned_cols=44 Identities=5% Similarity=-0.223 Sum_probs=35.7
Q ss_pred CCeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEeccCCC
Q 014387 222 EGRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGKSNP 265 (425)
Q Consensus 222 egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~ 265 (425)
.++.+.|+|.+. |++|+.+.+.+.++++..+..+.+..|..+..
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~ 62 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKY 62 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCch
Confidence 466888888888 99999999999999877666677777776643
No 186
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=91.01 E-value=0.71 Score=39.62 Aligned_cols=42 Identities=10% Similarity=-0.157 Sum_probs=35.1
Q ss_pred cCCeEEEEEeCCC-cchHHHHHHHHHHHHHHc-CCCeeEEEecc
Q 014387 221 AEGRYICLYGGED-MDWIRKFTTATNAVAKTA-GIPLGMVYVGK 262 (425)
Q Consensus 221 ~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~-~~~~Eiv~Vs~ 262 (425)
..||.+.|||-+. |++|+.-.+.|.++.++. +..++++.|+.
T Consensus 21 ~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~ 64 (126)
T cd03012 21 LRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHS 64 (126)
T ss_pred hCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEecc
Confidence 4789888888666 999999999999996653 46899999976
No 187
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=90.96 E-value=0.58 Score=39.05 Aligned_cols=43 Identities=14% Similarity=0.078 Sum_probs=35.3
Q ss_pred CCeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEeccCCC
Q 014387 222 EGRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGKSNP 265 (425)
Q Consensus 222 egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~ 265 (425)
.||.+.|+|.+. |++|+.+.|.+.++++.. ..+.++.|..|.+
T Consensus 14 ~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~ 57 (103)
T cd02985 14 KGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDEN 57 (103)
T ss_pred CCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCC
Confidence 489999999998 999999999999997775 5566777776643
No 188
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=90.86 E-value=0.55 Score=50.51 Aligned_cols=30 Identities=13% Similarity=0.134 Sum_probs=26.3
Q ss_pred CCEEEEEEecCCChHhHHHH--HHHHHHHHHh
Q 014387 63 RKMVLLLISDLDISQEEVII--LEQLYSEARQ 92 (425)
Q Consensus 63 GK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~ 92 (425)
...|++-|.|.||+.|.+.. ..+.-..+++
T Consensus 42 ~~~vlVeFYAPWCghck~LaPey~kAA~~Lke 73 (493)
T KOG0190|consen 42 HEFVLVEFYAPWCGHCKALAPEYEKAATELKE 73 (493)
T ss_pred CceEEEEEEchhhhhhhhhCcHHHHHHHHhhc
Confidence 36899999999999999988 8888888865
No 189
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=90.78 E-value=0.35 Score=41.81 Aligned_cols=43 Identities=9% Similarity=0.032 Sum_probs=31.2
Q ss_pred ccCCeEEEEEeCCC-cchHHHHHHHHHHHHHH--cCCCeeEEEecc
Q 014387 220 MAEGRYICLYGGED-MDWIRKFTTATNAVAKT--AGIPLGMVYVGK 262 (425)
Q Consensus 220 ~~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~--~~~~~Eiv~Vs~ 262 (425)
..++|.|.|+|+++ |+||+.+.+.+.+.... ....|-.+-|..
T Consensus 16 ~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~ 61 (117)
T cd02959 16 KDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLED 61 (117)
T ss_pred HHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecC
Confidence 46789999999999 99999999998876332 334444444443
No 190
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=90.69 E-value=0.22 Score=39.89 Aligned_cols=50 Identities=16% Similarity=0.123 Sum_probs=38.3
Q ss_pred cccCCeEEEEEeCCC-cchHHHHHHHH---HHHHHHcCCCeeEEEeccCCChhH
Q 014387 219 WMAEGRYICLYGGED-MDWIRKFTTAT---NAVAKTAGIPLGMVYVGKSNPKDR 268 (425)
Q Consensus 219 ~~~egk~I~lY~g~d-~~w~r~FT~~l---~~~~k~~~~~~Eiv~Vs~d~~~e~ 268 (425)
.-.+||.|.|||+++ |+||+.|...+ .++.+....+|-.+.|..++....
T Consensus 13 A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~ 66 (82)
T PF13899_consen 13 AKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPN 66 (82)
T ss_dssp HHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHH
T ss_pred HHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChh
Confidence 347899999999999 99999998876 344443567888888887655443
No 191
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=90.35 E-value=0.65 Score=38.32 Aligned_cols=43 Identities=7% Similarity=-0.120 Sum_probs=36.2
Q ss_pred CCeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEeccCC
Q 014387 222 EGRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGKSN 264 (425)
Q Consensus 222 egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~ 264 (425)
.|+.+.|+|.+. |++|+++.+.+.++++..+..+.++.|.-+.
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~ 60 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDE 60 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCc
Confidence 577788999888 9999999999999987766678888887775
No 192
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=90.28 E-value=0.24 Score=41.24 Aligned_cols=46 Identities=11% Similarity=0.183 Sum_probs=34.3
Q ss_pred cCCeEEEEEeCCC-cchHHHHHHHHHHH---HHHcCCCeeEEEeccCCCh
Q 014387 221 AEGRYICLYGGED-MDWIRKFTTATNAV---AKTAGIPLGMVYVGKSNPK 266 (425)
Q Consensus 221 ~egk~I~lY~g~d-~~w~r~FT~~l~~~---~k~~~~~~Eiv~Vs~d~~~ 266 (425)
.+||.+.+||++. |++|+.+.+.+.+. .+.....+.++++..+.++
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSR 52 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHH
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcc
Confidence 4788999999777 99999999998864 3334457999999887654
No 193
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=90.14 E-value=1.9 Score=37.48 Aligned_cols=67 Identities=6% Similarity=0.066 Sum_probs=42.4
Q ss_pred CCCEEEEEEecC----CChHhHHHH-HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeec
Q 014387 62 RRKMVLLLISDL----DISQEEVII-LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVY 136 (425)
Q Consensus 62 kGK~VlL~FsAs----WC~pCr~~~-L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~ 136 (425)
.+|.+++|+.+. ||..|+.-+ =.++-+-+++ +| |+|-- |...
T Consensus 16 e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~-------~f-v~w~~---------dv~~---------------- 62 (116)
T cd02991 16 ELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT-------RM-LFWAC---------SVAK---------------- 62 (116)
T ss_pred hCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc-------CE-EEEEE---------ecCC----------------
Confidence 579999999999 899997766 2223333321 34 33332 1110
Q ss_pred cCcccChHHHHHHHHhCCCCCCCeEEEECCCC
Q 014387 137 HPSLIDRAVIQFIKEEWQFGKKPILVVLDPHG 168 (425)
Q Consensus 137 ~p~l~D~~~~~~L~~~f~v~~iPtlVvLD~~G 168 (425)
+++ ..++..+++.+.|++++|++++
T Consensus 63 ------~eg-~~la~~l~~~~~P~~~~l~~~~ 87 (116)
T cd02991 63 ------PEG-YRVSQALRERTYPFLAMIMLKD 87 (116)
T ss_pred ------hHH-HHHHHHhCCCCCCEEEEEEecC
Confidence 011 3577789999999999996543
No 194
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=90.03 E-value=0.42 Score=40.96 Aligned_cols=47 Identities=17% Similarity=0.159 Sum_probs=35.1
Q ss_pred cccCC-eEEEEEeCCC-cchHHHHHHHHH---HHHHHcCCCeeEEEeccCCC
Q 014387 219 WMAEG-RYICLYGGED-MDWIRKFTTATN---AVAKTAGIPLGMVYVGKSNP 265 (425)
Q Consensus 219 ~~~eg-k~I~lY~g~d-~~w~r~FT~~l~---~~~k~~~~~~Eiv~Vs~d~~ 265 (425)
...+| |.+.|+|+++ |+||+.+.+.+. ++.+.....+.++.|.-|.+
T Consensus 9 a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~ 60 (125)
T cd02951 9 AAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGD 60 (125)
T ss_pred HHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCC
Confidence 35788 9999999998 999999998774 34333334688888876643
No 195
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=90.01 E-value=0.6 Score=39.40 Aligned_cols=52 Identities=17% Similarity=0.098 Sum_probs=38.2
Q ss_pred ccCCeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEeccCCC-hhHHhhhhhh
Q 014387 220 MAEGRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGKSNP-KDRVRRNNDT 275 (425)
Q Consensus 220 ~~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~-~e~f~~~~~~ 275 (425)
...||.+.|||.+. |++|+.+.+.+.+++++ ++++.|+-|.+ .+..+++.+.
T Consensus 17 ~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~----~~~i~i~~~~~~~~~~~~~~~~ 70 (123)
T cd03011 17 SLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD----YPVVSVALRSGDDGAVARFMQK 70 (123)
T ss_pred HhCCCEEEEEEECCcChhhhhhChHHHHHHhh----CCEEEEEccCCCHHHHHHHHHH
Confidence 45778888888777 99999999999988654 66677776543 5556655544
No 196
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=89.98 E-value=1.8 Score=33.94 Aligned_cols=85 Identities=12% Similarity=-0.046 Sum_probs=46.8
Q ss_pred EEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCC--CchHHHHHHHHHHh-CCCceeeccCcccC
Q 014387 68 LLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMP--WTDNKQKQFQSLQS-AMPWYTVYHPSLID 142 (425)
Q Consensus 68 L~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~--w~D~~~~~F~~~~~-~mPW~aV~~p~l~D 142 (425)
.+|++..||.|..+- |.++-... ..+++++++++.-.... .+............ ...| .+ .+
T Consensus 2 ~~f~d~~Cp~C~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~ 68 (98)
T cd02972 2 VEFFDPLCPYCYLFEPELEKLLYAD-------DGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFE---AL---HE 68 (98)
T ss_pred eEEECCCCHhHHhhhHHHHHHHhhc-------CCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHH---HH---HH
Confidence 579999999999987 66655222 24688888876322110 01111111111111 0011 11 11
Q ss_pred hHHHHHHHHhCCCCCCCeEEEEC
Q 014387 143 RAVIQFIKEEWQFGKKPILVVLD 165 (425)
Q Consensus 143 ~~~~~~L~~~f~v~~iPtlVvLD 165 (425)
.-....+.+.+++.+.|++++-|
T Consensus 69 ~l~~~~~~~~~g~~g~Pt~v~~~ 91 (98)
T cd02972 69 ALADTALARALGVTGTPTFVVNG 91 (98)
T ss_pred HHHHHHHHHHcCCCCCCEEEECC
Confidence 11234677899999999999977
No 197
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=89.83 E-value=2.3 Score=42.00 Aligned_cols=117 Identities=17% Similarity=0.221 Sum_probs=65.5
Q ss_pred CCcccC--CCCCeEecc-ccCCCE-EEEEEecCCChHhHHHHHHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHH
Q 014387 45 LPLVDG--ATKTRVNLE-VLRRKM-VLLLISDLDISQEEVIILEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQ 120 (425)
Q Consensus 45 ~pl~dg--~~g~~V~ls-~LkGK~-VlL~FsAsWC~pCr~~~L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~ 120 (425)
.|.+.| ++|+.+++. .|+||+ |+..|+.-|-..|...-...+.+++.. .....+++|-|++.+ .-.
T Consensus 101 FP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~p~~~~~~~---~~~~~~q~v~In~~e-------~~~ 170 (252)
T PF05176_consen 101 FPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTSPFLEDFLQ---EPYGRVQIVEINLIE-------NWL 170 (252)
T ss_pred CCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHHHhhHHHHHHhh---CCCCceEEEEEecch-------HHH
Confidence 577777 568888884 589995 333333445444433334444555533 112379999999743 322
Q ss_pred HHHH------HHHhCCC-ceeeccCcccChHHHHHHHHhCCCCCC--CeEEEECCCCcEE
Q 014387 121 KQFQ------SLQSAMP-WYTVYHPSLIDRAVIQFIKEEWQFGKK--PILVVLDPHGKVV 171 (425)
Q Consensus 121 ~~F~------~~~~~mP-W~aV~~p~l~D~~~~~~L~~~f~v~~i--PtlVvLD~~GkVv 171 (425)
+++- .+.+.+| ...-.|....+......+++..++.+. .-.+|||++|+|.
T Consensus 171 k~~l~~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~GYvyLVD~~grIR 230 (252)
T PF05176_consen 171 KSWLVKLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSYVGYVYLVDPNGRIR 230 (252)
T ss_pred HHHHHHHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCCcCeEEEECCCCeEE
Confidence 3331 2344555 111112111111113478888998774 6688999999995
No 198
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=89.82 E-value=0.93 Score=46.04 Aligned_cols=72 Identities=19% Similarity=0.302 Sum_probs=47.7
Q ss_pred CCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCcc
Q 014387 63 RKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPSL 140 (425)
Q Consensus 63 GK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~l 140 (425)
..+|+|+|.|.||+--+... ..+.-+.+++.- . +=.+||-.+ | .|+
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~---P-~~kvvwg~V-D-----cd~---------------------- 60 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEF---P-EGKVVWGKV-D-----CDK---------------------- 60 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhC---C-CcceEEEEc-c-----cch----------------------
Confidence 45899999999998877766 666666666521 1 235888763 3 221
Q ss_pred cChHHHHHHHHhCCCCCCCeEEEECCCCcEEc
Q 014387 141 IDRAVIQFIKEEWQFGKKPILVVLDPHGKVVC 172 (425)
Q Consensus 141 ~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~ 172 (425)
...|+.+|+|...||+=|+ .+|.+++
T Consensus 61 -----e~~ia~ky~I~KyPTlKvf-rnG~~~~ 86 (375)
T KOG0912|consen 61 -----EDDIADKYHINKYPTLKVF-RNGEMMK 86 (375)
T ss_pred -----hhHHhhhhccccCceeeee-eccchhh
Confidence 1246677888888887766 4565555
No 199
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=89.62 E-value=1.7 Score=38.01 Aligned_cols=20 Identities=10% Similarity=0.360 Sum_probs=17.2
Q ss_pred HHHHHhCCCC--CCCeEEEECC
Q 014387 147 QFIKEEWQFG--KKPILVVLDP 166 (425)
Q Consensus 147 ~~L~~~f~v~--~iPtlVvLD~ 166 (425)
+.|.++|+|+ +.||+.++..
T Consensus 68 ~~L~~~y~I~~~gyPTl~lF~~ 89 (116)
T cd03007 68 MELGERYKLDKESYPVIYLFHG 89 (116)
T ss_pred HHHHHHhCCCcCCCCEEEEEeC
Confidence 4688999999 9999999864
No 200
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=89.36 E-value=4 Score=39.61 Aligned_cols=95 Identities=18% Similarity=0.270 Sum_probs=54.3
Q ss_pred CCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEE--eccCCCC--------CCchH-HHHHHHHHHh
Q 014387 62 RRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWL--PIVDPNM--------PWTDN-KQKQFQSLQS 128 (425)
Q Consensus 62 kGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~I--sIvd~s~--------~w~D~-~~~~F~~~~~ 128 (425)
.||.++..|+...||.|+.+- |.++.+ .+++|.++ |+..... -|... ..+.|.+...
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----------~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~ 175 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNA----------LGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMK 175 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhc----------CCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHc
Confidence 478999999999999999976 544321 14666664 5421111 12211 2344544332
Q ss_pred CCCceeeccCcc-cChHHHHHHHHhCCCCCCCeEEEECCCCcEE
Q 014387 129 AMPWYTVYHPSL-IDRAVIQFIKEEWQFGKKPILVVLDPHGKVV 171 (425)
Q Consensus 129 ~mPW~aV~~p~l-~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv 171 (425)
.-+ ++-... .+.+....+.+.+++++.|++|+- +|+++
T Consensus 176 ~~~---~~~~~c~~~v~~~~~la~~lgi~gTPtiv~~--~G~~~ 214 (232)
T PRK10877 176 GKD---VSPASCDVDIADHYALGVQFGVQGTPAIVLS--NGTLV 214 (232)
T ss_pred CCC---CCcccccchHHHhHHHHHHcCCccccEEEEc--CCeEe
Confidence 211 110000 122344578899999999999953 67776
No 201
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=89.32 E-value=0.95 Score=37.76 Aligned_cols=41 Identities=10% Similarity=0.096 Sum_probs=32.8
Q ss_pred cCCeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEecc
Q 014387 221 AEGRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGK 262 (425)
Q Consensus 221 ~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~ 262 (425)
..||.+.++|.+. |++||.+.+.+.++++..+ .+.++-|..
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~-~~~~~~vd~ 57 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFP-QIRHLAIEE 57 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc-cCceEEEEC
Confidence 5799999999999 9999999999999976644 355555533
No 202
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=89.23 E-value=0.59 Score=46.47 Aligned_cols=43 Identities=7% Similarity=0.018 Sum_probs=37.1
Q ss_pred cCCeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEeccCCC
Q 014387 221 AEGRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGKSNP 265 (425)
Q Consensus 221 ~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~ 265 (425)
+.|+++.++|.+. |++|+.+.+.|.++++..+ +++++|+-|..
T Consensus 164 l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~ 207 (271)
T TIGR02740 164 LAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGG 207 (271)
T ss_pred hcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCC
Confidence 5788999999888 9999999999999977654 89999998854
No 203
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=88.97 E-value=0.38 Score=51.75 Aligned_cols=30 Identities=17% Similarity=0.081 Sum_probs=25.0
Q ss_pred CCCEEEEEEecCCChHhHHHH--HHHHHHHHH
Q 014387 62 RRKMVLLLISDLDISQEEVII--LEQLYSEAR 91 (425)
Q Consensus 62 kGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k 91 (425)
.+|.||+-|.|.||++|.++- ++++-++++
T Consensus 383 e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~ 414 (493)
T KOG0190|consen 383 EGKDVLVEFYAPWCGHCKALAPIYEELAEKYK 414 (493)
T ss_pred cccceEEEEcCcccchhhhhhhHHHHHHHHhc
Confidence 579999999999999999876 666666664
No 204
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=88.87 E-value=1.4 Score=37.65 Aligned_cols=44 Identities=5% Similarity=0.082 Sum_probs=34.5
Q ss_pred ccCCeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEeccCC
Q 014387 220 MAEGRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGKSN 264 (425)
Q Consensus 220 ~~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~ 264 (425)
+..++.+-+||+++ |++|+.+.+.+.+++... ..++++.|..|.
T Consensus 19 l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~ 63 (113)
T cd02975 19 MKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDE 63 (113)
T ss_pred hCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCc
Confidence 45677788999887 999999999999997554 456777776664
No 205
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=88.84 E-value=0.87 Score=36.90 Aligned_cols=44 Identities=14% Similarity=0.064 Sum_probs=33.0
Q ss_pred cCCeEEEEEeCCC-cchHHHHHHHHHHHHHHcC---CCeeEEEeccCCC
Q 014387 221 AEGRYICLYGGED-MDWIRKFTTATNAVAKTAG---IPLGMVYVGKSNP 265 (425)
Q Consensus 221 ~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~---~~~Eiv~Vs~d~~ 265 (425)
.+++ +.|+|.+. |++|+.+.+.+.++++..+ ..+.++.|..+..
T Consensus 15 ~~~~-~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~ 62 (102)
T cd03005 15 AEGN-HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH 62 (102)
T ss_pred hcCC-EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC
Confidence 3444 77888788 9999999999999966543 3678888776643
No 206
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=88.69 E-value=1.4 Score=35.54 Aligned_cols=41 Identities=10% Similarity=0.019 Sum_probs=31.5
Q ss_pred CeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEeccC
Q 014387 223 GRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGKS 263 (425)
Q Consensus 223 gk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d 263 (425)
++.+.++|.+. |++||.+.+.+.++++.....+-++-|..+
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~ 55 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAE 55 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccc
Confidence 68888888777 999999999999997664555555555443
No 207
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=88.66 E-value=1 Score=37.31 Aligned_cols=44 Identities=11% Similarity=0.051 Sum_probs=32.9
Q ss_pred ccCCeEEEEEeCCC-cchHHHHHHHHHHHHHHc---CCCeeEEEeccC
Q 014387 220 MAEGRYICLYGGED-MDWIRKFTTATNAVAKTA---GIPLGMVYVGKS 263 (425)
Q Consensus 220 ~~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~---~~~~Eiv~Vs~d 263 (425)
+.+++.+.|+|.+. |++||.+.+.+.++++.. +..+.+..+..+
T Consensus 12 ~~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~ 59 (104)
T cd03000 12 VRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDAT 59 (104)
T ss_pred hccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECc
Confidence 34567888999888 999999999999986553 345666666554
No 208
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=88.44 E-value=1.2 Score=35.74 Aligned_cols=34 Identities=12% Similarity=0.167 Sum_probs=24.9
Q ss_pred EEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEec
Q 014387 67 LLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPI 108 (425)
Q Consensus 67 lL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsI 108 (425)
+..|+.+|||.|+.-. |.++..+++ ++++..|.+
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~--------~i~~~~idi 38 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERD--------DFDYRYVDI 38 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhccccc--------CCcEEEEEC
Confidence 4569999999999977 777765542 466667765
No 209
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=88.44 E-value=0.79 Score=36.89 Aligned_cols=44 Identities=7% Similarity=-0.009 Sum_probs=32.6
Q ss_pred ccCCeEEEEEeCCC-cchHHHHHHHHHHHHHHcCC--CeeEEEeccC
Q 014387 220 MAEGRYICLYGGED-MDWIRKFTTATNAVAKTAGI--PLGMVYVGKS 263 (425)
Q Consensus 220 ~~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~--~~Eiv~Vs~d 263 (425)
+.+++.+.|+|.+. |+.||+|.+.+.++++.... .+-++.+..+
T Consensus 10 ~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 56 (102)
T TIGR01126 10 VLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDAT 56 (102)
T ss_pred hccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEcc
Confidence 34788988888777 99999999999988655333 4555555544
No 210
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.39 E-value=1.8 Score=38.36 Aligned_cols=39 Identities=10% Similarity=0.043 Sum_probs=25.4
Q ss_pred CCCEEEEEEec--------CCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEe
Q 014387 62 RRKMVLLLISD--------LDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLP 107 (425)
Q Consensus 62 kGK~VlL~FsA--------sWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~Is 107 (425)
+||.|.++|.| ||||.|.+-. +.+..++. ..+.-+|.|-
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~a-------p~~~~~v~v~ 72 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHA-------PEDVHFVHVY 72 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhC-------CCceEEEEEE
Confidence 66777888876 6999999876 44444422 2355666654
No 211
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=88.10 E-value=1.2 Score=36.09 Aligned_cols=43 Identities=5% Similarity=-0.033 Sum_probs=33.8
Q ss_pred CCeEEEEEeCCC-cchHHHHHHHHHHHHHHcC--CCeeEEEeccCC
Q 014387 222 EGRYICLYGGED-MDWIRKFTTATNAVAKTAG--IPLGMVYVGKSN 264 (425)
Q Consensus 222 egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~--~~~Eiv~Vs~d~ 264 (425)
.++.+.++|.+. |++||+|.+.+.++++... ..+.++.+..+.
T Consensus 17 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~ 62 (105)
T cd02998 17 DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADE 62 (105)
T ss_pred CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCC
Confidence 456788888777 9999999999999976643 567777777665
No 212
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=88.01 E-value=7.9 Score=35.65 Aligned_cols=122 Identities=18% Similarity=0.204 Sum_probs=73.8
Q ss_pred CCCCCCCc--ccCCCCCeEeccccCCCEEEEE-EecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCC
Q 014387 40 PKDDLLPL--VDGATKTRVNLEVLRRKMVLLL-ISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMP 114 (425)
Q Consensus 40 ~k~~~~pl--~dg~~g~~V~ls~LkGK~VlL~-FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~ 114 (425)
..++++|. +.+.+.+.++++++.||..+|. |=+.+-|-|...+ +++.-.++ .+..|+-||. |
T Consensus 19 ~vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~--------~~~~Vl~IS~-D---- 85 (158)
T COG2077 19 QVGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKL--------GNTVVLCISM-D---- 85 (158)
T ss_pred ccCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhcc--------CCcEEEEEeC-C----
Confidence 34666774 4567788999999999865555 5555788898887 44433333 3578888884 2
Q ss_pred CchHHHHHHHHHHhCCCceeeccCcccChHHHHHHHHhCCC--CCCC-------eEEEECCCCcEEccccchhhhh
Q 014387 115 WTDNKQKQFQSLQSAMPWYTVYHPSLIDRAVIQFIKEEWQF--GKKP-------ILVVLDPHGKVVCPNALHMMWI 181 (425)
Q Consensus 115 w~D~~~~~F~~~~~~mPW~aV~~p~l~D~~~~~~L~~~f~v--~~iP-------tlVvLD~~GkVv~~na~~~I~~ 181 (425)
.-=.++.|=.- ..+.= .++ +.|- +.+..-+.|++ ..-| +.+|+|.+|+|+...-...|.+
T Consensus 86 -LPFAq~RfC~a-eGi~n-v~~---lSd~-r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~elv~eit~ 154 (158)
T COG2077 86 -LPFAQKRFCGA-EGIEN-VIT---LSDF-RDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSELVPEITE 154 (158)
T ss_pred -ChhHHhhhhhh-cCccc-ceE---hhhh-hhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEEccchhhc
Confidence 22234455221 11110 111 1121 22345577775 3444 6889999999998887776654
No 213
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=87.72 E-value=1.2 Score=37.44 Aligned_cols=44 Identities=2% Similarity=-0.021 Sum_probs=35.0
Q ss_pred cCCeEEEEEeCCC-cchHHHHHHHHHHHHHHcC-CCeeEEEeccCC
Q 014387 221 AEGRYICLYGGED-MDWIRKFTTATNAVAKTAG-IPLGMVYVGKSN 264 (425)
Q Consensus 221 ~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~-~~~Eiv~Vs~d~ 264 (425)
..||.+.+.|.+. |++|+++.+.+.++++..+ ..+.+..|..|.
T Consensus 19 ~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~ 64 (109)
T cd02993 19 RRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG 64 (109)
T ss_pred hcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc
Confidence 4678888888788 9999999999999976544 458888887764
No 214
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=87.65 E-value=1.2 Score=35.96 Aligned_cols=43 Identities=2% Similarity=-0.063 Sum_probs=33.8
Q ss_pred CCeEEEEEeCCC-cchHHHHHHHHHHHHHHcC--CCeeEEEeccCC
Q 014387 222 EGRYICLYGGED-MDWIRKFTTATNAVAKTAG--IPLGMVYVGKSN 264 (425)
Q Consensus 222 egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~--~~~Eiv~Vs~d~ 264 (425)
.++.+.|+|.+. |++|+.|.+.+.++++... ..+.+..|..+.
T Consensus 17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~ 62 (104)
T cd02995 17 SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATA 62 (104)
T ss_pred CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcc
Confidence 467888888777 9999999999999976533 467777777664
No 215
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=86.76 E-value=1.4 Score=37.25 Aligned_cols=45 Identities=9% Similarity=-0.025 Sum_probs=36.2
Q ss_pred cCCeEEEEEeCCC-cchHHHHHHHHHHHHHHc-CCCeeEEEeccCCC
Q 014387 221 AEGRYICLYGGED-MDWIRKFTTATNAVAKTA-GIPLGMVYVGKSNP 265 (425)
Q Consensus 221 ~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~-~~~~Eiv~Vs~d~~ 265 (425)
..|+.+.|+|-+. |++|+.+.+.+.++++.. +.++.+..|.-|..
T Consensus 22 ~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~ 68 (111)
T cd02963 22 SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE 68 (111)
T ss_pred cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc
Confidence 3688999999888 999999999999997654 34678888876643
No 216
>PTZ00051 thioredoxin; Provisional
Probab=86.69 E-value=1.8 Score=34.93 Aligned_cols=40 Identities=10% Similarity=0.083 Sum_probs=29.8
Q ss_pred cCCeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEeccC
Q 014387 221 AEGRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGKS 263 (425)
Q Consensus 221 ~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d 263 (425)
.+++.+.|||.+. |++||.|.+.+.++++.. .+ +.|+.-|
T Consensus 16 ~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~-~~--~~~~~vd 56 (98)
T PTZ00051 16 SQNELVIVDFYAEWCGPCKRIAPFYEECSKEY-TK--MVFVKVD 56 (98)
T ss_pred hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHc-CC--cEEEEEE
Confidence 4678888888888 999999999999986652 22 4454444
No 217
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=86.67 E-value=1.7 Score=37.19 Aligned_cols=45 Identities=7% Similarity=-0.059 Sum_probs=35.2
Q ss_pred ccCCeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEeccCCC
Q 014387 220 MAEGRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGKSNP 265 (425)
Q Consensus 220 ~~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~ 265 (425)
+.+++.+.+||.+. |++|+...+.+.++++... .+.++.|..++.
T Consensus 19 i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~-~i~f~~Vd~~~~ 64 (113)
T cd02989 19 VKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHL-ETKFIKVNAEKA 64 (113)
T ss_pred HhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcC-CCEEEEEEcccC
Confidence 34567888888877 9999999999999976632 467788877754
No 218
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=86.62 E-value=6.7 Score=42.70 Aligned_cols=157 Identities=11% Similarity=0.052 Sum_probs=85.5
Q ss_pred HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCcccChHHHHHHHHhCCCCCCCeEE
Q 014387 83 LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPSLIDRAVIQFIKEEWQFGKKPILV 162 (425)
Q Consensus 83 L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~l~D~~~~~~L~~~f~v~~iPtlV 162 (425)
|.++.++++ +++++++.. |.+.+.+.+.++-.+++.+--|.+.+.+ .|......+.+.|++..+|+.+
T Consensus 357 l~~~~~~l~-------~~v~l~~~~--~~~~~~~~e~~~~l~e~~~~s~~i~~~~---~~~~~~~~~~~~~~v~~~P~~~ 424 (555)
T TIGR03143 357 LVGIFGRLE-------NPVTLLLFL--DGSNEKSAELQSFLGEFASLSEKLNSEA---VNRGEEPESETLPKITKLPTVA 424 (555)
T ss_pred HHHHHHhcC-------CCEEEEEEE--CCCchhhHHHHHHHHHHHhcCCcEEEEE---eccccchhhHhhcCCCcCCEEE
Confidence 666666553 367775443 2222223333333345444335666543 2322235678899999999999
Q ss_pred EECCCCcEEccccchhhhhcC-CccCCCCchhHHHhhhhcccceeccccCCCccccccc--cCCe-EEEEEeCCCcchHH
Q 014387 163 VLDPHGKVVCPNALHMMWIWG-SLAYPFSTAREEALWREETWRLELLVDGLDPVILNWM--AEGR-YICLYGGEDMDWIR 238 (425)
Q Consensus 163 vLD~~GkVv~~na~~~I~~~g-~~aFPft~~~~~~L~~~~~w~~~ll~d~~d~~i~~~~--~egk-~I~lY~g~d~~w~r 238 (425)
+++.+|+-. + |.=.| +.++-|++.=+.-+.-... ..+++..+.+.+ ++++ .|=+|-|-.|+.|.
T Consensus 425 i~~~~~~~~--~----i~f~g~P~G~Ef~s~i~~i~~~~~~------~~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp 492 (555)
T TIGR03143 425 LLDDDGNYT--G----LKFHGVPSGHELNSFILALYNAAGP------GQPLGEELLEKIKKITKPVNIKIGVSLSCTLCP 492 (555)
T ss_pred EEeCCCccc--c----eEEEecCccHhHHHHHHHHHHhcCC------CCCCCHHHHHHHHhcCCCeEEEEEECCCCCCcH
Confidence 998776421 1 11123 2444554432222211100 012233222222 3444 57788899999998
Q ss_pred HHHHHHHHHHHHc-CCCeeEEEeccC
Q 014387 239 KFTTATNAVAKTA-GIPLGMVYVGKS 263 (425)
Q Consensus 239 ~FT~~l~~~~k~~-~~~~Eiv~Vs~d 263 (425)
+=...+.+++.+. ++..||+-+..-
T Consensus 493 ~~~~~~~~~~~~~~~i~~~~i~~~~~ 518 (555)
T TIGR03143 493 DVVLAAQRIASLNPNVEAEMIDVSHF 518 (555)
T ss_pred HHHHHHHHHHHhCCCceEEEEECccc
Confidence 7777777776665 688888877654
No 219
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=86.47 E-value=1.1 Score=36.26 Aligned_cols=32 Identities=6% Similarity=0.011 Sum_probs=26.9
Q ss_pred ccCCeEEEEEeCCC-cchHHHHHHHHHHHHHHc
Q 014387 220 MAEGRYICLYGGED-MDWIRKFTTATNAVAKTA 251 (425)
Q Consensus 220 ~~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~ 251 (425)
+.+++.+.|+|.++ |++||++.+.+.++++..
T Consensus 14 ~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~ 46 (104)
T cd02997 14 LKKEKHVLVMFYAPWCGHCKKMKPEFTKAATEL 46 (104)
T ss_pred HhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHH
Confidence 45677889999888 999999999998886543
No 220
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=86.31 E-value=2 Score=35.64 Aligned_cols=47 Identities=6% Similarity=-0.053 Sum_probs=35.9
Q ss_pred ccCCeEEEEEeCCC-cchHHHHHHHHHHHHHHc------CCCeeEEEeccCCCh
Q 014387 220 MAEGRYICLYGGED-MDWIRKFTTATNAVAKTA------GIPLGMVYVGKSNPK 266 (425)
Q Consensus 220 ~~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~------~~~~Eiv~Vs~d~~~ 266 (425)
+.+++.+.|+|.+. |++|+++.+.+.++++.. ...+.+..|..|...
T Consensus 15 i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~ 68 (108)
T cd02996 15 LQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES 68 (108)
T ss_pred HhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH
Confidence 45678899999888 999999999999886542 124777778777543
No 221
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=86.27 E-value=1.7 Score=47.28 Aligned_cols=55 Identities=7% Similarity=-0.071 Sum_probs=43.3
Q ss_pred CCeEEEEEeCCC-cchHHHHHHHHHHHHHHc-CCCeeEEEeccC-----CChhHHhhhhhhh
Q 014387 222 EGRYICLYGGED-MDWIRKFTTATNAVAKTA-GIPLGMVYVGKS-----NPKDRVRRNNDTI 276 (425)
Q Consensus 222 egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~-~~~~Eiv~Vs~d-----~~~e~f~~~~~~i 276 (425)
.||.+.|+|-+. |+||+...|.|.+++++. ...+++|.|+.+ .+.+.|+++++.+
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~ 116 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGL 116 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhC
Confidence 789999999888 999999999999997654 357999999753 3455666665443
No 222
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=86.12 E-value=2.5 Score=36.83 Aligned_cols=47 Identities=13% Similarity=0.008 Sum_probs=36.0
Q ss_pred cCCeEEEEEe-CC-CcchHHHHHHHHHHHHHH-cCCCeeEEEeccCCChh
Q 014387 221 AEGRYICLYG-GE-DMDWIRKFTTATNAVAKT-AGIPLGMVYVGKSNPKD 267 (425)
Q Consensus 221 ~egk~I~lY~-g~-d~~w~r~FT~~l~~~~k~-~~~~~Eiv~Vs~d~~~e 267 (425)
..||.+.|+| +. .|++|+.=.+.+.++.+. .+..++++.|+.+.+..
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~ 75 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPP 75 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHH
T ss_pred hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHH
Confidence 6676644444 44 799999999999999654 67789999999986654
No 223
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=85.79 E-value=1.8 Score=33.83 Aligned_cols=45 Identities=4% Similarity=0.118 Sum_probs=34.0
Q ss_pred EEEeCCCcchHHHHHHHHHHHHHHcCCC--eeEEEeccCCChhHHhhhhhh
Q 014387 227 CLYGGEDMDWIRKFTTATNAVAKTAGIP--LGMVYVGKSNPKDRVRRNNDT 275 (425)
Q Consensus 227 ~lY~g~d~~w~r~FT~~l~~~~k~~~~~--~Eiv~Vs~d~~~e~f~~~~~~ 275 (425)
-+|+...|++|+...+.|.+. +++ ++.+-|..+++.+.+++++..
T Consensus 2 ~~f~~~~Cp~C~~~~~~L~~~----~i~~~~~~~~v~~~~~~~~~~~~l~~ 48 (84)
T TIGR02180 2 VVFSKSYCPYCKKAKEILAKL----NVKPAYEVVELDQLSNGSEIQDYLEE 48 (84)
T ss_pred EEEECCCChhHHHHHHHHHHc----CCCCCCEEEEeeCCCChHHHHHHHHH
Confidence 467777799999988888766 355 999999998777666665544
No 224
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=85.77 E-value=2.1 Score=37.45 Aligned_cols=44 Identities=9% Similarity=0.027 Sum_probs=35.4
Q ss_pred CCeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEeccCCC
Q 014387 222 EGRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGKSNP 265 (425)
Q Consensus 222 egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~ 265 (425)
++|.|-|-|+++ |+||+...|.+.++++......-++-|.-|.-
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev 57 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKV 57 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEecccc
Confidence 689999999999 99999999999999877533366666666643
No 225
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=84.81 E-value=1.7 Score=37.56 Aligned_cols=39 Identities=18% Similarity=0.248 Sum_probs=28.9
Q ss_pred CCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEec
Q 014387 62 RRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPI 108 (425)
Q Consensus 62 kGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsI 108 (425)
.+++++..|+..+||.|+.+- |.+++.++ + ++.+++.++
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~------~--~~~~~~~~~ 44 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKED------P--DVRVVFKEF 44 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHC------C--CceEEEEeC
Confidence 468999999999999999987 77766543 1 355666543
No 226
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=84.59 E-value=3 Score=35.97 Aligned_cols=47 Identities=9% Similarity=-0.096 Sum_probs=38.5
Q ss_pred ccCCeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEeccCCCh
Q 014387 220 MAEGRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGKSNPK 266 (425)
Q Consensus 220 ~~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~~ 266 (425)
+.+++.+.+.|-+. |++||.+.+.+.++++..+..+.++-|..|...
T Consensus 26 ~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~ 73 (113)
T cd03006 26 RTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQ 73 (113)
T ss_pred ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCh
Confidence 46788999999999 999999999999998776656777777666443
No 227
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=84.20 E-value=3.2 Score=37.57 Aligned_cols=45 Identities=18% Similarity=0.101 Sum_probs=38.3
Q ss_pred CCeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEeccCCCh
Q 014387 222 EGRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGKSNPK 266 (425)
Q Consensus 222 egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~~ 266 (425)
+++.+.+-|+|+ |+||+...|.|.+++++.+....++-|.-|..+
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~ 67 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVP 67 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCH
Confidence 678899999999 999999999999998876666777888777543
No 228
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=83.43 E-value=3 Score=38.02 Aligned_cols=43 Identities=7% Similarity=0.121 Sum_probs=33.0
Q ss_pred cCCeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEeccCCC
Q 014387 221 AEGRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGKSNP 265 (425)
Q Consensus 221 ~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~ 265 (425)
.-+++..|+|-+. |+|||+..|.+.++.++. .++++.|+-|..
T Consensus 48 ~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~--~~~Vi~Vs~d~~ 91 (153)
T TIGR02738 48 NQDDYALVFFYQSTCPYCHQFAPVLKRFSQQF--GLPVYAFSLDGQ 91 (153)
T ss_pred hcCCCEEEEEECCCChhHHHHHHHHHHHHHHc--CCcEEEEEeCCC
Confidence 3445556667666 999999999999997664 488999987753
No 229
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=83.40 E-value=3.5 Score=37.57 Aligned_cols=46 Identities=4% Similarity=-0.197 Sum_probs=37.5
Q ss_pred CCeEEEEEeCCC-cchHHHHHHHHHHHHHHcC-CCeeEEEeccCCChh
Q 014387 222 EGRYICLYGGED-MDWIRKFTTATNAVAKTAG-IPLGMVYVGKSNPKD 267 (425)
Q Consensus 222 egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~-~~~Eiv~Vs~d~~~e 267 (425)
.++.+.++|.+. |++|+.+.+.+.++++..+ .++.++.|.-|+..+
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~ 93 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPN 93 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHH
Confidence 467888888888 9999999999999977644 568899998876543
No 230
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=83.25 E-value=2.1 Score=31.94 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=27.8
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCC
Q 014387 226 ICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSN 264 (425)
Q Consensus 226 I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~ 264 (425)
|-+|+...|++|+..... ++..++++|.+-|+++.
T Consensus 1 V~vy~~~~C~~C~~~~~~----L~~~~i~y~~~dv~~~~ 35 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEF----LDEKGIPYEEVDVDEDE 35 (60)
T ss_dssp EEEEESTTSHHHHHHHHH----HHHTTBEEEEEEGGGSH
T ss_pred cEEEEcCCCcCHHHHHHH----HHHcCCeeeEcccccch
Confidence 458888889999765544 46679999999999983
No 231
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=83.10 E-value=0.72 Score=32.06 Aligned_cols=30 Identities=17% Similarity=0.513 Sum_probs=21.2
Q ss_pred Cccc-eecCCCCCCCCceeecCCCCcccceee
Q 014387 388 HCNR-LVLPGTAGKIPERIICSECGRVMEKFL 418 (425)
Q Consensus 388 ~c~~-~~~~~~~g~i~~~i~C~~C~r~Me~~~ 418 (425)
.|.+ +++....+. .+.+.||+||..+++-+
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~~~~r~~ 40 (41)
T smart00834 10 DCGHTFEVLQKISD-DPLATCPECGGDVRRLI 40 (41)
T ss_pred CCCCEEEEEEecCC-CCCCCCCCCCCcceecc
Confidence 4666 555543344 88999999999887754
No 232
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=82.87 E-value=3.2 Score=32.37 Aligned_cols=32 Identities=19% Similarity=0.006 Sum_probs=21.1
Q ss_pred EEEecCCChHhHHHHHHHHHHHHHhhhccCCCceEEEEEec
Q 014387 68 LLISDLDISQEEVIILEQLYSEARQHQTRHESQYEVVWLPI 108 (425)
Q Consensus 68 L~FsAsWC~pCr~~~L~~iY~~~k~~~~k~~~~fEIV~IsI 108 (425)
+.|++.|||+|+..- ++.+++. -.|+++-|..
T Consensus 3 ~~y~~~~Cp~C~~~~--~~l~~~~-------~~~~~~~v~~ 34 (82)
T cd03419 3 VVFSKSYCPYCKRAK--SLLKELG-------VKPAVVELDQ 34 (82)
T ss_pred EEEEcCCCHHHHHHH--HHHHHcC-------CCcEEEEEeC
Confidence 568999999999764 2222331 2577777763
No 233
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=82.65 E-value=2.3 Score=43.01 Aligned_cols=44 Identities=7% Similarity=-0.121 Sum_probs=38.7
Q ss_pred CeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEeccCCCh
Q 014387 223 GRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGKSNPK 266 (425)
Q Consensus 223 gk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~~ 266 (425)
-+-|-+||.+. |++|+++||.|.+++.+.++.|....|-.|...
T Consensus 43 ~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p 87 (304)
T COG3118 43 EVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEP 87 (304)
T ss_pred CCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcch
Confidence 34677889999 999999999999998888999999999998653
No 234
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=82.58 E-value=4.8 Score=35.32 Aligned_cols=48 Identities=13% Similarity=0.162 Sum_probs=36.1
Q ss_pred EeccccCCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEec
Q 014387 56 VNLEVLRRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPI 108 (425)
Q Consensus 56 V~ls~LkGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsI 108 (425)
..+..-.+++++..|+..-||+|+.+- |.++.+++-+ ..++.+++.++
T Consensus 5 ~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~-----~~~v~~~~~~~ 54 (162)
T PF13462_consen 5 PTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYID-----PGKVKFVFRPV 54 (162)
T ss_dssp EEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-----TTTEEEEEEES
T ss_pred CeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccC-----CCceEEEEEEc
Confidence 445566779999999999999999987 7788888732 23688888875
No 235
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=82.31 E-value=2.4 Score=37.17 Aligned_cols=43 Identities=16% Similarity=0.053 Sum_probs=33.8
Q ss_pred CCeEEEEEeCC-------C-cchHHHHHHHHHHHHHHcCCCeeEEEeccCC
Q 014387 222 EGRYICLYGGE-------D-MDWIRKFTTATNAVAKTAGIPLGMVYVGKSN 264 (425)
Q Consensus 222 egk~I~lY~g~-------d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~ 264 (425)
+|+.+.|+|.| . |++||...|.+.+++.+......++.|.-|+
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~ 70 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGD 70 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCC
Confidence 58899999988 7 9999999999999976655455666665543
No 236
>PHA03050 glutaredoxin; Provisional
Probab=81.49 E-value=1.4 Score=37.78 Aligned_cols=35 Identities=9% Similarity=0.159 Sum_probs=20.9
Q ss_pred EEEEecCCChHhHHHHHHHHHHHHHhhhccCCCceEEEEEe
Q 014387 67 LLLISDLDISQEEVIILEQLYSEARQHQTRHESQYEVVWLP 107 (425)
Q Consensus 67 lL~FsAsWC~pCr~~~L~~iY~~~k~~~~k~~~~fEIV~Is 107 (425)
++.|+.+|||.|..-. ++-++.+- ....|+++-|.
T Consensus 15 V~vys~~~CPyC~~ak--~~L~~~~i----~~~~~~~i~i~ 49 (108)
T PHA03050 15 VTIFVKFTCPFCRNAL--DILNKFSF----KRGAYEIVDIK 49 (108)
T ss_pred EEEEECCCChHHHHHH--HHHHHcCC----CcCCcEEEECC
Confidence 3459999999998754 22233321 11257777664
No 237
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=81.48 E-value=4.1 Score=31.73 Aligned_cols=44 Identities=5% Similarity=0.173 Sum_probs=31.6
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCCChhHHhhhh
Q 014387 226 ICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSNPKDRVRRNN 273 (425)
Q Consensus 226 I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~~e~f~~~~ 273 (425)
|-+|....||+|+.....|.+ .+++++.+.|..+.+.+..++.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~----~~~~~~~~~v~~~~~~~~~~~~~ 45 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKE----LGVKPAVVELDQHEDGSEIQDYL 45 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHH----cCCCcEEEEEeCCCChHHHHHHH
Confidence 567777779999776655544 47799999999987654444444
No 238
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=81.23 E-value=6.8 Score=38.50 Aligned_cols=113 Identities=14% Similarity=0.310 Sum_probs=67.6
Q ss_pred CCCCe-Eecccc-C-CCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCc---------
Q 014387 51 ATKTR-VNLEVL-R-RKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWT--------- 116 (425)
Q Consensus 51 ~~g~~-V~ls~L-k-GK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~--------- 116 (425)
.+|++ .++.++ + +++++|+|.+--|||=+.-+ ++++.+++.+. -+|=+|+|-=.-+++.|.
T Consensus 87 l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~-----adFl~VYI~EAHpsDgW~~~~~~~~i~ 161 (237)
T PF00837_consen 87 LDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV-----ADFLIVYIEEAHPSDGWAFGNNPYEIP 161 (237)
T ss_pred eCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh-----hheehhhHhhhCcCCCccCCCCceeec
Confidence 34555 889887 4 48999999999999999888 88999998752 256666663211222222
Q ss_pred -----hHHHHHHHHHHhCCCceeeccCcccChHHHHHHHHhCCCCCCC-eEEEECCCCcEEccccc
Q 014387 117 -----DNKQKQFQSLQSAMPWYTVYHPSLIDRAVIQFIKEEWQFGKKP-ILVVLDPHGKVVCPNAL 176 (425)
Q Consensus 117 -----D~~~~~F~~~~~~mPW~aV~~p~l~D~~~~~~L~~~f~v~~iP-tlVvLD~~GkVv~~na~ 176 (425)
++....-+.+....| ..|.+.|. ......+.|+ ..| .++|| .+|||+-..+.
T Consensus 162 qh~sledR~~aA~~l~~~~~----~~pi~vD~-mdN~~~~~Yg--A~PeRlyIi-~~gkv~Y~Gg~ 219 (237)
T PF00837_consen 162 QHRSLEDRLRAAKLLKEEFP----QCPIVVDT-MDNNFNKAYG--ALPERLYII-QDGKVVYKGGP 219 (237)
T ss_pred CCCCHHHHHHHHHHHHhhCC----CCCEEEEc-cCCHHHHHhC--CCcceEEEE-ECCEEEEeCCC
Confidence 111122223333333 34445554 2334555554 456 45666 49999877763
No 239
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=80.73 E-value=4.1 Score=30.36 Aligned_cols=16 Identities=6% Similarity=-0.014 Sum_probs=12.9
Q ss_pred EEEEecCCChHhHHHH
Q 014387 67 LLLISDLDISQEEVII 82 (425)
Q Consensus 67 lL~FsAsWC~pCr~~~ 82 (425)
+..|++.|||+|+...
T Consensus 2 v~l~~~~~c~~c~~~~ 17 (73)
T cd02976 2 VTVYTKPDCPYCKATK 17 (73)
T ss_pred EEEEeCCCChhHHHHH
Confidence 3568999999999743
No 240
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=80.65 E-value=9.8 Score=36.78 Aligned_cols=136 Identities=17% Similarity=0.213 Sum_probs=76.8
Q ss_pred HHHH-HHHHHHhhcCcchHHHHHHHhcCCCC-------CCCcccCCCCCeEecccc-CCC--EEEEEEe-----cCCChH
Q 014387 14 EALH-NLKTLFEMSHIDNMRILRALIYPKDD-------LLPLVDGATKTRVNLEVL-RRK--MVLLLIS-----DLDISQ 77 (425)
Q Consensus 14 e~y~-~l~~lf~t~~~d~~~~Lk~LI~~k~~-------~~pl~dg~~g~~V~ls~L-kGK--~VlL~Fs-----AsWC~p 77 (425)
|.|+ .++.|.... ++...-..+|-..+.. +.-.|+|.+|+ |+|++| .|+ .|+-.|= ..-|+-
T Consensus 10 eew~~Ar~~LL~~E-KeltR~~dalaa~RR~LP~v~v~~~Y~F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~g 87 (211)
T PF05988_consen 10 EEWLAARDALLARE-KELTRARDALAAERRRLPMVEVDKDYVFDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPG 87 (211)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCCccCCCCeEEeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCc
Confidence 4455 555566555 5555555555543333 11258888885 899775 665 2332332 456999
Q ss_pred hHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHH-HhCCCceeeccCcccChHHHHHHHHhCC
Q 014387 78 EEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSL-QSAMPWYTVYHPSLIDRAVIQFIKEEWQ 154 (425)
Q Consensus 78 Cr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~-~~~mPW~aV~~p~l~D~~~~~~L~~~f~ 154 (425)
|-..+ +......+.+ .+.-++.||- . .-+....|.+. .-.+|||+..-. ....-|+
T Consensus 88 Cs~~~D~~~g~l~hL~~------rd~tfa~vSr-a-----P~~~i~afk~rmGW~~pw~Ss~gs---------~Fn~D~~ 146 (211)
T PF05988_consen 88 CSFWADHIDGALRHLHA------RDTTFAVVSR-A-----PLEKIEAFKRRMGWTFPWYSSYGS---------DFNYDFG 146 (211)
T ss_pred hhhhHhhhhhhHHHHHh------CCceEEEEeC-C-----CHHHHHHHHHhcCCCceEEEcCCC---------ccccccc
Confidence 99988 7677777754 2677888872 0 12334455442 246777765421 1223455
Q ss_pred C-----CCCCeEEEECCC-CcEEc
Q 014387 155 F-----GKKPILVVLDPH-GKVVC 172 (425)
Q Consensus 155 v-----~~iPtlVvLD~~-GkVv~ 172 (425)
+ ...|-+-|+=++ |+|-+
T Consensus 147 ~~~~~~~~~~g~svF~Rdg~~Vfh 170 (211)
T PF05988_consen 147 VSFDEGGEMPGLSVFLRDGGRVFH 170 (211)
T ss_pred ceeccCCCceeEEEEEEcCCEEEE
Confidence 4 456765544433 56644
No 241
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=80.64 E-value=9 Score=37.60 Aligned_cols=120 Identities=10% Similarity=0.117 Sum_probs=72.7
Q ss_pred CCeEeccccCCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCC
Q 014387 53 KTRVNLEVLRRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAM 130 (425)
Q Consensus 53 g~~V~ls~LkGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~m 130 (425)
|.+..+...+|+|++|-+=..+|..|..-+ |..+-.++.. .+ --+|.|+-| + ......+..+..+....
T Consensus 16 ~~~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~---~g--~~~I~f~vV-N---~~~~~s~~~~~~l~~r~ 86 (238)
T PF04592_consen 16 GGQDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLEN---EG--LSNISFMVV-N---HQGEHSRLKYWELKRRV 86 (238)
T ss_pred CCchHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHH---CC--CCceEEEEE-c---CCCcchhHHHHHHHHhC
Confidence 346788899999999999999999999966 9999999965 22 226666643 2 12345555555555543
Q ss_pred CceeeccCcccChHHHHHHHHhCCCCCCCeEEEECCCCcEEccccchhhhhcCCccCCC
Q 014387 131 PWYTVYHPSLIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVCPNALHMMWIWGSLAYPF 189 (425)
Q Consensus 131 PW~aV~~p~l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~~na~~~I~~~g~~aFPf 189 (425)
| ..+|++........+.+.++-+ .=-.+|+|+=|+++- ++..-|-.--|||
T Consensus 87 ~---~~ipVyqq~~~q~dvW~~L~G~-kdD~~iyDRCGrL~~----~i~~P~S~l~~~~ 137 (238)
T PF04592_consen 87 S---EHIPVYQQDENQPDVWELLNGS-KDDFLIYDRCGRLTY----HIPLPYSFLQFPY 137 (238)
T ss_pred C---CCCceecCCccccCHHHHhCCC-cCcEEEEeccCcEEE----EecCcHHHhcCHH
Confidence 3 1233332111112333433333 346789999999974 3333333444555
No 242
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=80.05 E-value=4.7 Score=32.83 Aligned_cols=44 Identities=9% Similarity=0.057 Sum_probs=32.4
Q ss_pred cCCeEEEEEeCCC-cchHHHHHHHHHHHHHHc-CCCeeEEEeccCCC
Q 014387 221 AEGRYICLYGGED-MDWIRKFTTATNAVAKTA-GIPLGMVYVGKSNP 265 (425)
Q Consensus 221 ~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~-~~~~Eiv~Vs~d~~ 265 (425)
.+|+. .|+|.+. |++|+++.|.+.++++.. +..+.+..|.-+..
T Consensus 15 ~~~~~-lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~ 60 (101)
T cd02994 15 LEGEW-MIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQE 60 (101)
T ss_pred hCCCE-EEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCC
Confidence 35554 5888777 999999999999997653 44677777766543
No 243
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=79.82 E-value=5.7 Score=29.90 Aligned_cols=40 Identities=10% Similarity=0.093 Sum_probs=27.8
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCCCh
Q 014387 226 ICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSNPK 266 (425)
Q Consensus 226 I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~~ 266 (425)
|-+|.+..|++|+...+.+.+++.. ...++...+.-+.++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~-~~~i~~~~id~~~~~ 42 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAAL-NPNISAEMIDAAEFP 42 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHh-CCceEEEEEEcccCH
Confidence 5577788899999999999888544 334555555444433
No 244
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=79.69 E-value=3.1 Score=37.14 Aligned_cols=45 Identities=9% Similarity=-0.011 Sum_probs=31.7
Q ss_pred cccCCeEEEEEeCCC-cchHHHHHHHHH---HHHHHcCCCeeEEEeccC
Q 014387 219 WMAEGRYICLYGGED-MDWIRKFTTATN---AVAKTAGIPLGMVYVGKS 263 (425)
Q Consensus 219 ~~~egk~I~lY~g~d-~~w~r~FT~~l~---~~~k~~~~~~Eiv~Vs~d 263 (425)
.-.++|.|.||+++| |+||+.+....- ++.+.+...|=+|-+--|
T Consensus 19 Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d 67 (130)
T cd02960 19 AKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHE 67 (130)
T ss_pred HHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEec
Confidence 347899999999999 999999887653 444444556654444433
No 245
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=79.66 E-value=2.7 Score=45.88 Aligned_cols=67 Identities=15% Similarity=0.146 Sum_probs=48.1
Q ss_pred CEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCccc
Q 014387 64 KMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPSLI 141 (425)
Q Consensus 64 K~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~l~ 141 (425)
|.-++-|.++||+.||.|. .+++-+.++. =-.||-|-.|| .-+.
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~-------W~~vv~vaaVd-----CA~~---------------------- 103 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEK-------WRPVVRVAAVD-----CADE---------------------- 103 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhc-------ccceeEEEEee-----ccch----------------------
Confidence 4667889999999999998 7777777743 13466665544 1110
Q ss_pred ChHHHHHHHHhCCCCCCCeEEEECCC
Q 014387 142 DRAVIQFIKEEWQFGKKPILVVLDPH 167 (425)
Q Consensus 142 D~~~~~~L~~~f~v~~iPtlVvLD~~ 167 (425)
....|.+.|+|.+.|++--+-|+
T Consensus 104 ---~N~~lCRef~V~~~Ptlryf~~~ 126 (606)
T KOG1731|consen 104 ---ENVKLCREFSVSGYPTLRYFPPD 126 (606)
T ss_pred ---hhhhhHhhcCCCCCceeeecCCc
Confidence 12357788999999999998876
No 246
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=78.78 E-value=5.4 Score=34.25 Aligned_cols=55 Identities=11% Similarity=0.070 Sum_probs=39.2
Q ss_pred cCCeEEEEEeC--CCcchHHHHHHHHHHHHHH-cCCCeeEEEeccCCChhHHhhhhhhh
Q 014387 221 AEGRYICLYGG--EDMDWIRKFTTATNAVAKT-AGIPLGMVYVGKSNPKDRVRRNNDTI 276 (425)
Q Consensus 221 ~egk~I~lY~g--~d~~w~r~FT~~l~~~~k~-~~~~~Eiv~Vs~d~~~e~f~~~~~~i 276 (425)
..||.+.|+|. ..|++|+.=.+.+.++++. .+..+++|.|+.|.+ +..+++.+..
T Consensus 21 ~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~-~~~~~~~~~~ 78 (140)
T cd03017 21 LRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSV-ESHAKFAEKY 78 (140)
T ss_pred hCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCH-HHHHHHHHHh
Confidence 45887777774 4599999877777777433 345789999999854 5666666553
No 247
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=78.62 E-value=1.3 Score=31.75 Aligned_cols=31 Identities=16% Similarity=0.572 Sum_probs=21.2
Q ss_pred Cccc-eecCCCCCCCCceeecCCCCc-ccceeee
Q 014387 388 HCNR-LVLPGTAGKIPERIICSECGR-VMEKFLM 419 (425)
Q Consensus 388 ~c~~-~~~~~~~g~i~~~i~C~~C~r-~Me~~~~ 419 (425)
.|.+ +++--..+. ++.+.||+||. .+++-++
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~~~~~r~~S 42 (42)
T PF09723_consen 10 ECGHEFEVLQSISE-DDPVPCPECGSTEVRRVIS 42 (42)
T ss_pred CCCCEEEEEEEcCC-CCCCcCCCCCCCceEEecC
Confidence 4664 444333344 99999999999 8887553
No 248
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=78.36 E-value=4.3 Score=38.25 Aligned_cols=38 Identities=11% Similarity=0.219 Sum_probs=30.3
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCCC
Q 014387 226 ICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSNP 265 (425)
Q Consensus 226 I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~ 265 (425)
+.+++..+|++|+++.+.+.++.+..+ |+++-|+-|.+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~ 110 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQ 110 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCC
Confidence 444556779999999999999976654 89999988754
No 249
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=77.05 E-value=15 Score=28.83 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=14.6
Q ss_pred HhCCCCCCCeEEEECCCCcEEccc
Q 014387 151 EEWQFGKKPILVVLDPHGKVVCPN 174 (425)
Q Consensus 151 ~~f~v~~iPtlVvLD~~GkVv~~n 174 (425)
.+|++.++|+++ | +|+++...
T Consensus 43 ~~ygv~~vPalv-I--ng~~~~~G 63 (76)
T PF13192_consen 43 EKYGVMSVPALV-I--NGKVVFVG 63 (76)
T ss_dssp HHTT-SSSSEEE-E--TTEEEEES
T ss_pred HHcCCCCCCEEE-E--CCEEEEEe
Confidence 679999999995 5 47766433
No 250
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=76.73 E-value=6.2 Score=29.12 Aligned_cols=16 Identities=6% Similarity=-0.041 Sum_probs=13.1
Q ss_pred EEEEecCCChHhHHHH
Q 014387 67 LLLISDLDISQEEVII 82 (425)
Q Consensus 67 lL~FsAsWC~pCr~~~ 82 (425)
+..|++.|||+|+.-.
T Consensus 2 v~ly~~~~Cp~C~~~~ 17 (72)
T cd02066 2 VVVFSKSTCPYCKRAK 17 (72)
T ss_pred EEEEECCCCHHHHHHH
Confidence 3468899999999865
No 251
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=76.50 E-value=7.7 Score=33.64 Aligned_cols=53 Identities=13% Similarity=-0.033 Sum_probs=37.8
Q ss_pred cCCeEEEEEe--CCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCCChhHHhhhhhh
Q 014387 221 AEGRYICLYG--GEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSNPKDRVRRNNDT 275 (425)
Q Consensus 221 ~egk~I~lY~--g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~~e~f~~~~~~ 275 (425)
..||.+-||| |.+|++|+.=.+.+.++.++. ..++++-|+.|.. +..++..+.
T Consensus 24 ~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-~~~~vi~Is~d~~-~~~~~~~~~ 78 (143)
T cd03014 24 FAGKVKVISVFPSIDTPVCATQTKRFNKEAAKL-DNTVVLTISADLP-FAQKRWCGA 78 (143)
T ss_pred hCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhc-CCCEEEEEECCCH-HHHHHHHHh
Confidence 4577666666 555899999999999886664 4799999998764 334554433
No 252
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=75.90 E-value=13 Score=30.89 Aligned_cols=53 Identities=9% Similarity=0.127 Sum_probs=38.2
Q ss_pred ccCCeEEEEEe-CC-CcchHHHHHHHHHHHHHH-cCCCeeEEEeccCCChhHHhhhh
Q 014387 220 MAEGRYICLYG-GE-DMDWIRKFTTATNAVAKT-AGIPLGMVYVGKSNPKDRVRRNN 273 (425)
Q Consensus 220 ~~egk~I~lY~-g~-d~~w~r~FT~~l~~~~k~-~~~~~Eiv~Vs~d~~~e~f~~~~ 273 (425)
-+.||.+.|+| +. .|+.|+.-.+.+.++.++ ....+.++-|+.|..+ +.+++.
T Consensus 22 ~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~-~~~~~~ 77 (124)
T PF00578_consen 22 DLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPE-EIKQFL 77 (124)
T ss_dssp GGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHH-HHHHHH
T ss_pred HHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeeccccccc-chhhhh
Confidence 34777766666 33 599999999999988644 4568999999997554 444433
No 253
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=75.68 E-value=6.3 Score=31.94 Aligned_cols=42 Identities=17% Similarity=0.035 Sum_probs=33.5
Q ss_pred CeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEeccCC
Q 014387 223 GRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGKSN 264 (425)
Q Consensus 223 gk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~ 264 (425)
|+.+.++|.+. |++|+.+.+.+.++++.-+..+-.++|..|.
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~ 54 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADD 54 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHh
Confidence 56666666555 9999999999999998877778888877764
No 254
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=75.42 E-value=7.5 Score=33.47 Aligned_cols=44 Identities=18% Similarity=0.388 Sum_probs=33.7
Q ss_pred CeEEEEEe-CCCcchHHHHHHHHHHHHHH-cCCCeeEEEeccCCCh
Q 014387 223 GRYICLYG-GEDMDWIRKFTTATNAVAKT-AGIPLGMVYVGKSNPK 266 (425)
Q Consensus 223 gk~I~lY~-g~d~~w~r~FT~~l~~~~k~-~~~~~Eiv~Vs~d~~~ 266 (425)
++.+.+++ +..|++|+.-.+.|.++.++ .+..+++|-|+.|..+
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~ 69 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPE 69 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHH
Confidence 45666655 55699999999999988554 3567999999988654
No 255
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=75.30 E-value=6.8 Score=38.04 Aligned_cols=43 Identities=12% Similarity=-0.038 Sum_probs=34.0
Q ss_pred CeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEeccCCC
Q 014387 223 GRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGKSNP 265 (425)
Q Consensus 223 gk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~ 265 (425)
++.+.++|.+. |++||++.+.+.+++++.+..+.+..|..++.
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~ 95 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRA 95 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCccc
Confidence 56788888888 99999999999999877666666666655543
No 256
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=74.63 E-value=9.2 Score=29.31 Aligned_cols=34 Identities=12% Similarity=0.260 Sum_probs=26.6
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccC
Q 014387 226 ICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKS 263 (425)
Q Consensus 226 I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d 263 (425)
|-||+...|++|++ +++++++.++++|.+-|..+
T Consensus 2 i~ly~~~~Cp~C~~----ak~~L~~~~i~~~~i~i~~~ 35 (75)
T cd03418 2 VEIYTKPNCPYCVR----AKALLDKKGVDYEEIDVDGD 35 (75)
T ss_pred EEEEeCCCChHHHH----HHHHHHHCCCcEEEEECCCC
Confidence 56899989999965 44555667999999988765
No 257
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=74.50 E-value=7.6 Score=34.26 Aligned_cols=55 Identities=5% Similarity=0.004 Sum_probs=39.3
Q ss_pred cCCeEEEEEe--CCCcchHHHHHHHHHHHHHH-cCCCeeEEEeccCCChhHHhhhhhhh
Q 014387 221 AEGRYICLYG--GEDMDWIRKFTTATNAVAKT-AGIPLGMVYVGKSNPKDRVRRNNDTI 276 (425)
Q Consensus 221 ~egk~I~lY~--g~d~~w~r~FT~~l~~~~k~-~~~~~Eiv~Vs~d~~~e~f~~~~~~i 276 (425)
..||++-|+| +..|++|+.=.+.+.++.++ .+..+++|.|+.|. .+..+++.+..
T Consensus 28 ~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~-~~~~~~~~~~~ 85 (154)
T PRK09437 28 FQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDK-PEKLSRFAEKE 85 (154)
T ss_pred hCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCC-HHHHHHHHHHh
Confidence 5788777777 44599999877777776443 35679999999984 47777766543
No 258
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=74.34 E-value=7.8 Score=30.70 Aligned_cols=41 Identities=12% Similarity=0.218 Sum_probs=31.1
Q ss_pred cCCeEEEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCCC
Q 014387 221 AEGRYICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSNP 265 (425)
Q Consensus 221 ~egk~I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~ 265 (425)
.+..-|-||....|++|++ +++++++.++++|.+-|.++..
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~----ak~~L~~~gi~y~~idi~~~~~ 45 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAK----AKATLKEKGYDFEEIPLGNDAR 45 (79)
T ss_pred CCCCCEEEEECCCCHhHHH----HHHHHHHcCCCcEEEECCCChH
Confidence 3455688999999999964 4555566799999999977643
No 259
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=73.78 E-value=10 Score=39.14 Aligned_cols=67 Identities=10% Similarity=0.038 Sum_probs=44.5
Q ss_pred CCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCcc
Q 014387 63 RKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPSL 140 (425)
Q Consensus 63 GK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~l 140 (425)
.+..++-|+|.||++|+..+ ..++-..++ .+..+++..+. .+.
T Consensus 162 ~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~-----~~~~v~~~~~d----------~~~-------------------- 206 (383)
T KOG0191|consen 162 DADWLVEFYAPWCGHCKKLAPEWEKLAKLLK-----SKENVELGKID----------ATV-------------------- 206 (383)
T ss_pred CcceEEEEeccccHHhhhcChHHHHHHHHhc-----cCcceEEEeec----------cch--------------------
Confidence 35788889999999999984 555555442 12355555543 110
Q ss_pred cChHHHHHHHHhCCCCCCCeEEEECCCCc
Q 014387 141 IDRAVIQFIKEEWQFGKKPILVVLDPHGK 169 (425)
Q Consensus 141 ~D~~~~~~L~~~f~v~~iPtlVvLD~~Gk 169 (425)
...+...+++++.|+++++-+.++
T Consensus 207 -----~~~~~~~~~v~~~Pt~~~f~~~~~ 230 (383)
T KOG0191|consen 207 -----HKSLASRLEVRGYPTLKLFPPGEE 230 (383)
T ss_pred -----HHHHhhhhcccCCceEEEecCCCc
Confidence 124556778889999988877766
No 260
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=72.59 E-value=34 Score=32.51 Aligned_cols=115 Identities=16% Similarity=0.150 Sum_probs=74.7
Q ss_pred CCCCCcccC-CCCCeEeccccCCCEEEEEEecC--CChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCc
Q 014387 42 DDLLPLVDG-ATKTRVNLEVLRRKMVLLLISDL--DISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWT 116 (425)
Q Consensus 42 ~~~~pl~dg-~~g~~V~ls~LkGK~VlL~FsAs--WC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~ 116 (425)
++..|.|+. ++..++..-++-|.--++.||-. --|-|-.++ +..+--++.. .+.+.+..|+.+
T Consensus 9 gd~~PNfea~Tt~g~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~K------RnvKlialS~d~------ 76 (224)
T KOG0854|consen 9 GDTVPNFEADTTVGKIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDK------RNVKLIALSVDD------ 76 (224)
T ss_pred cCcCCCccccccccceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhh------cCceEEEeehhh------
Confidence 456788875 45668899888887777778754 468899988 7777777742 479999999732
Q ss_pred hHHHHHH----HHHHhCCCceeeccCcccChHHHHHHHHhCC--------CCCCC----eEEEECCCCcEE
Q 014387 117 DNKQKQF----QSLQSAMPWYTVYHPSLIDRAVIQFIKEEWQ--------FGKKP----ILVVLDPHGKVV 171 (425)
Q Consensus 117 D~~~~~F----~~~~~~mPW~aV~~p~l~D~~~~~~L~~~f~--------v~~iP----tlVvLD~~GkVv 171 (425)
-++-+.| ++|....|- +++||...|+. +.|+-.|+ -.++| .++|+||+-|+-
T Consensus 77 vesH~~Wi~DIks~~~~~~~-~~~yPIIaD~~--rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKir 144 (224)
T KOG0854|consen 77 VESHKDWIKDIKSYAKVKNH-SVPYPIIADPN--RELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIR 144 (224)
T ss_pred HHHHHHHHHHHHHHHhccCC-CCCCCeecCCc--hhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEE
Confidence 2233333 233344443 58999887763 44543333 23444 467888888774
No 261
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=72.53 E-value=7.9 Score=31.70 Aligned_cols=71 Identities=24% Similarity=0.312 Sum_probs=48.2
Q ss_pred EEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCcccChHH
Q 014387 68 LLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPSLIDRAV 145 (425)
Q Consensus 68 L~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~l~D~~~ 145 (425)
..|.|.-||.|..+. |.++ +-+||.|=|- . +-...+.|-.+..++| .| |.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl-----------~v~yd~VeIt--~-----Sm~NlKrFl~lRDs~~----~F----d~-- 56 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL-----------NVDYDFVEIT--E-----SMANLKRFLHLRDSRP----EF----DE-- 56 (85)
T ss_pred eeeccccCcchHHHHHHHHHc-----------CCCceeeehh--h-----hhhhHHHHHhhhccch----hH----Hh--
Confidence 357888899998776 4332 2357777664 1 4567788888888877 23 32
Q ss_pred HHHHHHhCCCCCCCeEEEECCCCcEEc
Q 014387 146 IQFIKEEWQFGKKPILVVLDPHGKVVC 172 (425)
Q Consensus 146 ~~~L~~~f~v~~iPtlVvLD~~GkVv~ 172 (425)
.+..++-|||.+.+ ++|+||-
T Consensus 57 ----vk~~gyiGIPall~--~d~~vVl 77 (85)
T COG4545 57 ----VKSNGYIGIPALLT--DDGKVVL 77 (85)
T ss_pred ----hhhcCcccceEEEe--CCCcEEE
Confidence 23578999998765 5777775
No 262
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=72.22 E-value=19 Score=32.02 Aligned_cols=40 Identities=15% Similarity=-0.023 Sum_probs=26.6
Q ss_pred CCeEEEEEeCCC-cchHHHHHHHHHHHHHHc--CCCeeEEEec
Q 014387 222 EGRYICLYGGED-MDWIRKFTTATNAVAKTA--GIPLGMVYVG 261 (425)
Q Consensus 222 egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~--~~~~Eiv~Vs 261 (425)
+++..-++|.+- ||+|+.|.+.+..+.+.. +..++.+.+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~~ 56 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPVV 56 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCCc
Confidence 555444444444 999999999999886653 4455544544
No 263
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=71.78 E-value=11 Score=31.61 Aligned_cols=48 Identities=6% Similarity=0.113 Sum_probs=35.1
Q ss_pred eEEEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCCChhHHhhhhhh
Q 014387 224 RYICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSNPKDRVRRNNDT 275 (425)
Q Consensus 224 k~I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~~e~f~~~~~~ 275 (425)
.-|-+|....||+|+ .++.+++..+++++.+-|..+.+....++.+..
T Consensus 8 ~~Vvvysk~~Cp~C~----~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~ 55 (99)
T TIGR02189 8 KAVVIFSRSSCCMCH----VVKRLLLTLGVNPAVHEIDKEPAGKDIENALSR 55 (99)
T ss_pred CCEEEEECCCCHHHH----HHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHH
Confidence 447799888899996 455566677999999999987665555554443
No 264
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=71.72 E-value=9.8 Score=32.06 Aligned_cols=40 Identities=10% Similarity=0.048 Sum_probs=30.4
Q ss_pred CeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEeccC
Q 014387 223 GRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGKS 263 (425)
Q Consensus 223 gk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d 263 (425)
++.+.++|.+. |++|+.+.+.+.++++... .+..+.|..+
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-~v~f~~vd~~ 64 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYP-ETKFVKINAE 64 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CcEEEEEEch
Confidence 47888888777 9999999999999976643 3445555554
No 265
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=70.97 E-value=10 Score=29.92 Aligned_cols=35 Identities=17% Similarity=0.181 Sum_probs=29.5
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEec
Q 014387 226 ICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVG 261 (425)
Q Consensus 226 I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs 261 (425)
|-+|+ ..|++|+...+.+.+++++.+..++++-|.
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~ 37 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVT 37 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 55665 669999999999999988888888888776
No 266
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=70.81 E-value=6.1 Score=34.95 Aligned_cols=53 Identities=9% Similarity=0.016 Sum_probs=34.8
Q ss_pred cCCeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEeccCCChhHHhhhhh
Q 014387 221 AEGRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGKSNPKDRVRRNND 274 (425)
Q Consensus 221 ~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~~e~f~~~~~ 274 (425)
...++-.|.++++ |+-|+.+.|.+.+++.+. ..+++-+++.|+..+-.++|..
T Consensus 39 ~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~-p~i~~~~i~rd~~~el~~~~lt 92 (129)
T PF14595_consen 39 IQKPYNILVITETWCGDCARNVPVLAKIAEAN-PNIEVRIILRDENKELMDQYLT 92 (129)
T ss_dssp --S-EEEEEE--TT-HHHHHHHHHHHHHHHH--TTEEEEEE-HHHHHHHTTTTTT
T ss_pred cCCCcEEEEEECCCchhHHHHHHHHHHHHHhC-CCCeEEEEEecCChhHHHHHHh
Confidence 3445555556666 999999999999998764 4888888888877766666553
No 267
>PTZ00056 glutathione peroxidase; Provisional
Probab=70.60 E-value=12 Score=35.36 Aligned_cols=54 Identities=13% Similarity=0.206 Sum_probs=41.0
Q ss_pred cCCeEEEEEeCCC-cchHHHHHHHHHHHHHH-cCCCeeEEEeccC-------CChhHHhhhhh
Q 014387 221 AEGRYICLYGGED-MDWIRKFTTATNAVAKT-AGIPLGMVYVGKS-------NPKDRVRRNND 274 (425)
Q Consensus 221 ~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~-~~~~~Eiv~Vs~d-------~~~e~f~~~~~ 274 (425)
..||.+.|.|-+. |++|++=.+.|.++.+. .+..++++-|+.+ .+.+..+++++
T Consensus 37 ~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~ 99 (199)
T PTZ00056 37 LKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFND 99 (199)
T ss_pred hCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHH
Confidence 4688888888777 99999988999999654 4567999999864 34456666653
No 268
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=70.60 E-value=14 Score=29.89 Aligned_cols=20 Identities=10% Similarity=0.019 Sum_probs=15.2
Q ss_pred EEEEecCCChHhHHHH--HHHH
Q 014387 67 LLLISDLDISQEEVII--LEQL 86 (425)
Q Consensus 67 lL~FsAsWC~pCr~~~--L~~i 86 (425)
+..|+.+|||.|..-- |.++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~ 23 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKL 23 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHh
Confidence 4569999999999865 5443
No 269
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=70.60 E-value=14 Score=32.12 Aligned_cols=43 Identities=14% Similarity=0.218 Sum_probs=32.4
Q ss_pred CeEEEEEeCC--CcchHHHHHHHHHHHHHHcCCCeeEEEeccCCC
Q 014387 223 GRYICLYGGE--DMDWIRKFTTATNAVAKTAGIPLGMVYVGKSNP 265 (425)
Q Consensus 223 gk~I~lY~g~--d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~ 265 (425)
|+.|..|.+. .|++|+.+.|.+.++++..+..+.++.|.-|..
T Consensus 28 ~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~ 72 (111)
T cd02965 28 GDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADE 72 (111)
T ss_pred CCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCC
Confidence 4444444444 399999999999999888777788878877754
No 270
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=70.31 E-value=8.7 Score=45.35 Aligned_cols=55 Identities=13% Similarity=-0.004 Sum_probs=42.2
Q ss_pred ccCCeEEEEEeCCC-cchHHHHHHHHHHHHHH-cCCCeeEEEeccC-----CChhHHhhhhh
Q 014387 220 MAEGRYICLYGGED-MDWIRKFTTATNAVAKT-AGIPLGMVYVGKS-----NPKDRVRRNND 274 (425)
Q Consensus 220 ~~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~-~~~~~Eiv~Vs~d-----~~~e~f~~~~~ 274 (425)
...||++.|+|-+. |++||...|.|.++.++ .+..|+++-|+.+ ++.+..++++.
T Consensus 417 ~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~ 478 (1057)
T PLN02919 417 DLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVL 478 (1057)
T ss_pred hcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHH
Confidence 35799999999999 99999999999999665 4566999998632 23445555443
No 271
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=70.17 E-value=12 Score=25.54 Aligned_cols=39 Identities=5% Similarity=-0.017 Sum_probs=28.6
Q ss_pred EEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCCChh
Q 014387 228 LYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSNPKD 267 (425)
Q Consensus 228 lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~~e 267 (425)
+|.+..|++|+...+.+.++ ...+..++++.++.+...+
T Consensus 3 ~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 41 (69)
T cd01659 3 LFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPA 41 (69)
T ss_pred EEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChH
Confidence 45566699999999999888 4456677777777665443
No 272
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=70.03 E-value=4.7 Score=41.04 Aligned_cols=25 Identities=12% Similarity=0.105 Sum_probs=20.3
Q ss_pred CEEEEEEecCCChHhHHHHHHHHHHHH
Q 014387 64 KMVLLLISDLDISQEEVIILEQLYSEA 90 (425)
Q Consensus 64 K~VlL~FsAsWC~pCr~~~L~~iY~~~ 90 (425)
-.-++.|.|.||..|.. |..++++.
T Consensus 44 diW~VdFYAPWC~HCKk--LePiWdeV 68 (468)
T KOG4277|consen 44 DIWFVDFYAPWCAHCKK--LEPIWDEV 68 (468)
T ss_pred CeEEEEeechhhhhccc--ccchhHHh
Confidence 47899999999999986 46666665
No 273
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=69.68 E-value=13 Score=33.79 Aligned_cols=52 Identities=13% Similarity=-0.039 Sum_probs=37.4
Q ss_pred cCCeEEEEEe--CCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCCChhHHhhhhh
Q 014387 221 AEGRYICLYG--GEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSNPKDRVRRNND 274 (425)
Q Consensus 221 ~egk~I~lY~--g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~~e~f~~~~~ 274 (425)
..||.+-|+| +..|++|+.=.+.+.+.+++. ..++++-||.|.. +.-+++.+
T Consensus 42 ~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~-~~~~vv~vs~D~~-~~~~~f~~ 95 (167)
T PRK00522 42 FAGKRKVLNIFPSIDTGVCATSVRKFNQEAAEL-DNTVVLCISADLP-FAQKRFCG 95 (167)
T ss_pred hCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHc-CCcEEEEEeCCCH-HHHHHHHH
Confidence 4677655555 566999999899888886665 3899999998864 33354443
No 274
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=69.28 E-value=14 Score=33.20 Aligned_cols=54 Identities=9% Similarity=0.230 Sum_probs=39.7
Q ss_pred CCeEEEEEeC-CCcchHHHHHHHHHHHHHHc-CCCeeEEEeccCC-------ChhHHhhhhhh
Q 014387 222 EGRYICLYGG-EDMDWIRKFTTATNAVAKTA-GIPLGMVYVGKSN-------PKDRVRRNNDT 275 (425)
Q Consensus 222 egk~I~lY~g-~d~~w~r~FT~~l~~~~k~~-~~~~Eiv~Vs~d~-------~~e~f~~~~~~ 275 (425)
.|+.+-|||- ..|+.|+.-.+.+.++.++. +..+++|-|+.|. +.+..+++++.
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~ 86 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKE 86 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHH
Confidence 6777666664 44999998889998886553 4689999999875 45566666643
No 275
>PF08209 Sgf11: Sgf11 (transcriptional regulation protein); InterPro: IPR013246 The Sgf11 family is a SAGA complex subunit in Saccharomyces cerevisiae (Baker's yeast). The SAGA complex is a multisubunit protein complex involved in transcriptional regulation. SAGA combines proteins involved in interactions with DNA-bound activators and TATA-binding protein (TBP), as well as enzymes for histone acetylation and deubiquitylation [].; PDB: 3M99_B 2LO2_A 3MHH_C 3MHS_C.
Probab=69.25 E-value=2.4 Score=29.12 Aligned_cols=13 Identities=31% Similarity=0.859 Sum_probs=9.4
Q ss_pred ceeecCCCCcccc
Q 014387 403 ERIICSECGRVME 415 (425)
Q Consensus 403 ~~i~C~~C~r~Me 415 (425)
..+.||+|+|++-
T Consensus 3 ~~~~C~nC~R~v~ 15 (33)
T PF08209_consen 3 PYVECPNCGRPVA 15 (33)
T ss_dssp -EEE-TTTSSEEE
T ss_pred CeEECCCCcCCcc
Confidence 4689999999874
No 276
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=67.99 E-value=9.7 Score=34.59 Aligned_cols=45 Identities=9% Similarity=-0.011 Sum_probs=35.4
Q ss_pred cCCeEEEEEe--CCCcchHHHHHHHHHHHHHH-cCCCeeEEEeccCCC
Q 014387 221 AEGRYICLYG--GEDMDWIRKFTTATNAVAKT-AGIPLGMVYVGKSNP 265 (425)
Q Consensus 221 ~egk~I~lY~--g~d~~w~r~FT~~l~~~~k~-~~~~~Eiv~Vs~d~~ 265 (425)
..||++-||| ++.|++|+.-.+.+.++.+. .+..+.++.||.|..
T Consensus 27 ~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~ 74 (173)
T cd03015 27 YKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSH 74 (173)
T ss_pred hCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCH
Confidence 4689888888 55699999988888887543 346799999998754
No 277
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=67.10 E-value=14 Score=30.96 Aligned_cols=15 Identities=13% Similarity=0.129 Sum_probs=12.1
Q ss_pred EEEecCCChHhHHHH
Q 014387 68 LLISDLDISQEEVII 82 (425)
Q Consensus 68 L~FsAsWC~pCr~~~ 82 (425)
+-|+.+|||.|+.--
T Consensus 11 vvysk~~Cp~C~~ak 25 (99)
T TIGR02189 11 VIFSRSSCCMCHVVK 25 (99)
T ss_pred EEEECCCCHHHHHHH
Confidence 348999999999754
No 278
>PRK10638 glutaredoxin 3; Provisional
Probab=66.80 E-value=12 Score=29.78 Aligned_cols=36 Identities=8% Similarity=0.270 Sum_probs=27.8
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCC
Q 014387 225 YICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSN 264 (425)
Q Consensus 225 ~I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~ 264 (425)
.|-||+...|++|+. ++.++++.+++++.+-|..+.
T Consensus 3 ~v~ly~~~~Cp~C~~----a~~~L~~~gi~y~~~dv~~~~ 38 (83)
T PRK10638 3 NVEIYTKATCPFCHR----AKALLNSKGVSFQEIPIDGDA 38 (83)
T ss_pred cEEEEECCCChhHHH----HHHHHHHcCCCcEEEECCCCH
Confidence 367999999999965 445556679999999997653
No 279
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=66.67 E-value=12 Score=28.97 Aligned_cols=15 Identities=13% Similarity=0.102 Sum_probs=12.4
Q ss_pred EEEecCCChHhHHHH
Q 014387 68 LLISDLDISQEEVII 82 (425)
Q Consensus 68 L~FsAsWC~pCr~~~ 82 (425)
..|+.+|||.|+.-.
T Consensus 4 ~ly~~~~C~~C~ka~ 18 (73)
T cd03027 4 TIYSRLGCEDCTAVR 18 (73)
T ss_pred EEEecCCChhHHHHH
Confidence 357889999999866
No 280
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=66.48 E-value=5.3 Score=35.79 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=21.1
Q ss_pred HHHHhCCCCCCCeEEEECCCCcEEcc
Q 014387 148 FIKEEWQFGKKPILVVLDPHGKVVCP 173 (425)
Q Consensus 148 ~L~~~f~v~~iPtlVvLD~~GkVv~~ 173 (425)
.|+.+|+|.++||++++ ++|+.+..
T Consensus 82 ~LA~~fgV~siPTLl~F-kdGk~v~~ 106 (132)
T PRK11509 82 AIGDRFGVFRFPATLVF-TGGNYRGV 106 (132)
T ss_pred HHHHHcCCccCCEEEEE-ECCEEEEE
Confidence 57889999999999999 67877754
No 281
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=66.39 E-value=8.6 Score=32.74 Aligned_cols=40 Identities=10% Similarity=-0.046 Sum_probs=29.7
Q ss_pred CCeEEEEEeCCC-cchHHHHHHHHHHHHHHcC---CCeeEEEec
Q 014387 222 EGRYICLYGGED-MDWIRKFTTATNAVAKTAG---IPLGMVYVG 261 (425)
Q Consensus 222 egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~---~~~Eiv~Vs 261 (425)
.++.+.++|.+. |++|+.+.+.+.++++..+ ..+.+..|.
T Consensus 18 ~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd 61 (114)
T cd02992 18 SPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVD 61 (114)
T ss_pred CCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEe
Confidence 347899999888 9999999999999865432 235555554
No 282
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=65.99 E-value=3.1 Score=31.34 Aligned_cols=27 Identities=30% Similarity=0.636 Sum_probs=17.6
Q ss_pred CccceecCCC-CC---CCCceeecCCCCccc
Q 014387 388 HCNRLVLPGT-AG---KIPERIICSECGRVM 414 (425)
Q Consensus 388 ~c~~~~~~~~-~g---~i~~~i~C~~C~r~M 414 (425)
.-|++.||.. -. .=.+.+.||+|||.+
T Consensus 26 ~gC~~~l~~~~~~~i~~~~~i~~Cp~CgRiL 56 (56)
T PF02591_consen 26 SGCHMELPPQELNEIRKGDEIVFCPNCGRIL 56 (56)
T ss_pred CCCCEEcCHHHHHHHHcCCCeEECcCCCccC
Confidence 3456777732 11 116789999999975
No 283
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=65.96 E-value=13 Score=32.02 Aligned_cols=38 Identities=11% Similarity=0.119 Sum_probs=25.4
Q ss_pred CCeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEe
Q 014387 222 EGRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYV 260 (425)
Q Consensus 222 egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~V 260 (425)
+++....+|.+- ||+|++|.+.+.++.+..+ .+.++|.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~-~~~~~~~ 42 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP-DVRVVFK 42 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC-CceEEEE
Confidence 344444455544 9999999999998865543 4555554
No 284
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=65.45 E-value=42 Score=31.16 Aligned_cols=109 Identities=18% Similarity=0.303 Sum_probs=60.9
Q ss_pred CCeEeccccCCCEEEEEEecCC-ChHhHHHHHHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHH--HHHHHHHHhC
Q 014387 53 KTRVNLEVLRRKMVLLLISDLD-ISQEEVIILEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNK--QKQFQSLQSA 129 (425)
Q Consensus 53 g~~V~ls~LkGK~VlL~FsAsW-C~pCr~~~L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~--~~~F~~~~~~ 129 (425)
.+.-+...|.||+-++.--|-. ........|.+.-++.+- .++.|+...|-=.| ..-|.-.. +.+-++-+++
T Consensus 27 y~~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f----~~d~yqtttIiN~d-DAi~gt~~fVrss~e~~kk~ 101 (160)
T PF09695_consen 27 YQPWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKF----PHDKYQTTTIINLD-DAIWGTGGFVRSSAEDSKKE 101 (160)
T ss_pred ccccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCC----CccceeEEEEEecc-cccccchHHHHHHHHHhhhh
Confidence 3344556799998666555544 333332225544433321 24568877663101 11122111 2223334567
Q ss_pred CCceeeccCcccChHHHHHHHHhCCCCCC-CeEEEECCCCcEEc
Q 014387 130 MPWYTVYHPSLIDRAVIQFIKEEWQFGKK-PILVVLDPHGKVVC 172 (425)
Q Consensus 130 mPW~aV~~p~l~D~~~~~~L~~~f~v~~i-PtlVvLD~~GkVv~ 172 (425)
.||-.+- .|..+ .++..|+...- -..||+|++|+|.-
T Consensus 102 ~p~s~~v----lD~~G--~~~~aW~L~~~~SaiiVlDK~G~V~F 139 (160)
T PF09695_consen 102 FPWSQFV----LDSNG--VVRKAWQLQEESSAIIVLDKQGKVQF 139 (160)
T ss_pred CCCcEEE----EcCCC--ceeccccCCCCCceEEEEcCCccEEE
Confidence 8996654 36654 67889999765 56889999999974
No 285
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=65.10 E-value=4.8 Score=29.54 Aligned_cols=31 Identities=19% Similarity=0.508 Sum_probs=19.7
Q ss_pred Cccc-eecCCCCCCCCceeecCCCCc-ccceeee
Q 014387 388 HCNR-LVLPGTAGKIPERIICSECGR-VMEKFLM 419 (425)
Q Consensus 388 ~c~~-~~~~~~~g~i~~~i~C~~C~r-~Me~~~~ 419 (425)
.|.+ +++-...+. ...+.||+||. .+++-++
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~~~~~r~~s 42 (52)
T TIGR02605 10 ACGHRFEVLQKMSD-DPLATCPECGGEKLRRLLS 42 (52)
T ss_pred CCCCEeEEEEecCC-CCCCCCCCCCCCceeEEec
Confidence 3666 554322233 67789999998 6776544
No 286
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=64.62 E-value=11 Score=37.46 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=30.7
Q ss_pred CCeEEEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCC
Q 014387 222 EGRYICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSN 264 (425)
Q Consensus 222 egk~I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~ 264 (425)
+-..|++| ..+|+-|++|.+.+..+++.-| |+++.||-|.
T Consensus 151 ~~gL~fFy-~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG 190 (256)
T TIGR02739 151 SYGLFFFY-RGKSPISQKMAPVIQAFAKEYG--ISVIPISVDG 190 (256)
T ss_pred ceeEEEEE-CCCCchhHHHHHHHHHHHHHhC--CeEEEEecCC
Confidence 33444554 4559999999999999976555 8999999985
No 287
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=64.57 E-value=12 Score=33.49 Aligned_cols=41 Identities=12% Similarity=0.049 Sum_probs=33.0
Q ss_pred CCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEecc
Q 014387 62 RRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIV 109 (425)
Q Consensus 62 kGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIv 109 (425)
.+++.++.|+.--||.|+.+- +.++.+++. .++.+.++|+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~-------~~v~~~~~~~~ 56 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLP-------KDVKFEKVPVV 56 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCC-------CCceEEEcCCc
Confidence 789999999999999999988 877777762 25677777753
No 288
>PRK10638 glutaredoxin 3; Provisional
Probab=64.22 E-value=48 Score=26.26 Aligned_cols=15 Identities=0% Similarity=-0.234 Sum_probs=12.5
Q ss_pred EEEecCCChHhHHHH
Q 014387 68 LLISDLDISQEEVII 82 (425)
Q Consensus 68 L~FsAsWC~pCr~~~ 82 (425)
..|+.+|||.|+.-.
T Consensus 5 ~ly~~~~Cp~C~~a~ 19 (83)
T PRK10638 5 EIYTKATCPFCHRAK 19 (83)
T ss_pred EEEECCCChhHHHHH
Confidence 368899999999865
No 289
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=63.39 E-value=12 Score=28.92 Aligned_cols=34 Identities=12% Similarity=0.225 Sum_probs=26.6
Q ss_pred EEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCC
Q 014387 227 CLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSN 264 (425)
Q Consensus 227 ~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~ 264 (425)
-||+...|++|++ +++++++.++++|.+-|..+.
T Consensus 2 ~ly~~~~Cp~C~~----ak~~L~~~~i~~~~~di~~~~ 35 (72)
T TIGR02194 2 TVYSKNNCVQCKM----TKKALEEHGIAFEEINIDEQP 35 (72)
T ss_pred EEEeCCCCHHHHH----HHHHHHHCCCceEEEECCCCH
Confidence 4899999999954 555556779999999997653
No 290
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.32 E-value=6.3 Score=34.97 Aligned_cols=44 Identities=20% Similarity=0.214 Sum_probs=29.4
Q ss_pred ccCCeEEEEEe--CC------C-cchHHHHHHHHHHHHHHc--CCCeeEEEeccC
Q 014387 220 MAEGRYICLYG--GE------D-MDWIRKFTTATNAVAKTA--GIPLGMVYVGKS 263 (425)
Q Consensus 220 ~~egk~I~lY~--g~------d-~~w~r~FT~~l~~~~k~~--~~~~Eiv~Vs~d 263 (425)
...|+.|++|| |. . ||-|++=-|...++.+++ +-.|=.+|||+.
T Consensus 22 ~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~r 76 (128)
T KOG3425|consen 22 VENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNR 76 (128)
T ss_pred HhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCC
Confidence 45677788887 33 2 666776666676766654 566777788875
No 291
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=63.09 E-value=12 Score=29.28 Aligned_cols=15 Identities=0% Similarity=-0.279 Sum_probs=12.5
Q ss_pred EEEecCCChHhHHHH
Q 014387 68 LLISDLDISQEEVII 82 (425)
Q Consensus 68 L~FsAsWC~pCr~~~ 82 (425)
..|+.+|||.|..--
T Consensus 2 ~ly~~~~Cp~C~~a~ 16 (79)
T TIGR02181 2 TIYTKPYCPYCTRAK 16 (79)
T ss_pred EEEecCCChhHHHHH
Confidence 458899999999865
No 292
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=62.93 E-value=16 Score=27.81 Aligned_cols=34 Identities=15% Similarity=0.265 Sum_probs=24.9
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccC
Q 014387 226 ICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKS 263 (425)
Q Consensus 226 I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d 263 (425)
|-||+...|++|++.-+.|. +.+.+++.+=+.++
T Consensus 2 v~ly~~~~C~~C~~~~~~L~----~~~~~~~~idi~~~ 35 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLD----KLGAAYEWVDIEED 35 (77)
T ss_pred EEEEECCCChhHHHHHHHHH----HcCCceEEEeCcCC
Confidence 56899999999998766654 44778877666544
No 293
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=62.77 E-value=20 Score=30.56 Aligned_cols=54 Identities=13% Similarity=0.059 Sum_probs=38.2
Q ss_pred cCCeEEEEEe--CCCcchHHHHHHHHHHHHHH-cCCCeeEEEeccCCChhHHhhhhhh
Q 014387 221 AEGRYICLYG--GEDMDWIRKFTTATNAVAKT-AGIPLGMVYVGKSNPKDRVRRNNDT 275 (425)
Q Consensus 221 ~egk~I~lY~--g~d~~w~r~FT~~l~~~~k~-~~~~~Eiv~Vs~d~~~e~f~~~~~~ 275 (425)
..||.+.||| +..|++|+.-.+.+.++++. ....+++|.|+.|.. +..+++.+.
T Consensus 20 ~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~-~~~~~~~~~ 76 (140)
T cd02971 20 FKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSP-FSHKAWAEK 76 (140)
T ss_pred hCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCH-HHHHHHHhc
Confidence 4688777777 44599999988888888544 245799999998743 444554433
No 294
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=61.40 E-value=11 Score=36.81 Aligned_cols=112 Identities=16% Similarity=0.162 Sum_probs=62.9
Q ss_pred CCCcccCC-------CCCeEeccccC--CCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCC
Q 014387 44 LLPLVDGA-------TKTRVNLEVLR--RKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPN 112 (425)
Q Consensus 44 ~~pl~dg~-------~g~~V~ls~Lk--GK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s 112 (425)
+.|.+.|. +++....+.-+ .+.=++-|.|.|.|.|+.+. ..++-.++..+ .=+|-=|=|.
T Consensus 116 ~eP~y~gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~----~lkFGkvDiG----- 186 (265)
T KOG0914|consen 116 PEPAYSGPETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNN----LLKFGKVDIG----- 186 (265)
T ss_pred CccccCCchheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCC----CCcccceeec-----
Confidence 56777773 23333332223 36789999999999999998 77777777431 1123333332
Q ss_pred CCCchHHHHHHHHHHhCCCceeeccCcccChHHHHHHHHhCCCCCCCeEEEECCCCcEEccccchhhhhcC-CccCCCCc
Q 014387 113 MPWTDNKQKQFQSLQSAMPWYTVYHPSLIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVCPNALHMMWIWG-SLAYPFST 191 (425)
Q Consensus 113 ~~w~D~~~~~F~~~~~~mPW~aV~~p~l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~~na~~~I~~~g-~~aFPft~ 191 (425)
-|.|..+ +| .|. +.+ .-+.+||.++. .+||-+.+ +..|-..| .-.|||+.
T Consensus 187 -rfpd~a~-kf----------ris-----~s~---------~srQLPT~ilF-q~gkE~~R--rP~vd~~gra~s~~fSe 237 (265)
T KOG0914|consen 187 -RFPDVAA-KF----------RIS-----LSP---------GSRQLPTYILF-QKGKEVSR--RPDVDVKGRAVSFPFSE 237 (265)
T ss_pred -cCcChHH-he----------eec-----cCc---------ccccCCeEEEE-ccchhhhc--CccccccCCcccccccH
Confidence 1333321 11 111 011 12357998888 56776654 44555555 45688876
Q ss_pred hh
Q 014387 192 AR 193 (425)
Q Consensus 192 ~~ 193 (425)
.-
T Consensus 238 en 239 (265)
T KOG0914|consen 238 EN 239 (265)
T ss_pred HH
Confidence 54
No 295
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=61.26 E-value=22 Score=27.25 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=28.0
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCC
Q 014387 225 YICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSN 264 (425)
Q Consensus 225 ~I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~ 264 (425)
-|-||....|++|+ +++++++..+++++.+-|..+.
T Consensus 2 ~v~lys~~~Cp~C~----~ak~~L~~~~i~~~~~~v~~~~ 37 (72)
T cd03029 2 SVSLFTKPGCPFCA----RAKAALQENGISYEEIPLGKDI 37 (72)
T ss_pred eEEEEECCCCHHHH----HHHHHHHHcCCCcEEEECCCCh
Confidence 36789888899995 4556666779999999887664
No 296
>PHA03050 glutaredoxin; Provisional
Probab=60.77 E-value=22 Score=30.37 Aligned_cols=52 Identities=10% Similarity=0.198 Sum_probs=35.2
Q ss_pred CCeEEEEEeCCCcchHHHHHHHHHHHHHHcCC---CeeEEEeccCCChhHHhhhhhhhh
Q 014387 222 EGRYICLYGGEDMDWIRKFTTATNAVAKTAGI---PLGMVYVGKSNPKDRVRRNNDTIA 277 (425)
Q Consensus 222 egk~I~lY~g~d~~w~r~FT~~l~~~~k~~~~---~~Eiv~Vs~d~~~e~f~~~~~~i~ 277 (425)
..+.|-+|....||+|+. +..++++.++ ++|.+-|....+....++.+..++
T Consensus 11 ~~~~V~vys~~~CPyC~~----ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~t 65 (108)
T PHA03050 11 ANNKVTIFVKFTCPFCRN----ALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQIT 65 (108)
T ss_pred ccCCEEEEECCCChHHHH----HHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHc
Confidence 345588998888999954 4455555566 899999997555445555554443
No 297
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=60.74 E-value=11 Score=40.94 Aligned_cols=52 Identities=19% Similarity=0.474 Sum_probs=34.5
Q ss_pred hhHHHHHHHhhhhhhccCCCCCcHHHHHHhhccCCCCCCccceecCCCCCCCCceeecCCCCcccce--------eeeee
Q 014387 350 AIFLTCMQEYNTVWKDQVEPKGFMPAMRDHLGQLHTPHHCNRLVLPGTAGKIPERIICSECGRVMEK--------FLMYR 421 (425)
Q Consensus 350 ~~~~~~~~~f~~~Wk~~v~~~gf~~a~~~~~~~~~~~~~c~~~~~~~~~g~i~~~i~C~~C~r~Me~--------~~~y~ 421 (425)
+.++..|..+++ +++=+.+.... +-..+-.|=...||+|||.... .|.|+
T Consensus 136 ~~i~~~L~~~~~--------------I~~il~~~~~~--------~~~~~~~P~~pic~~cGrv~~~~~~~~~~~~v~Y~ 193 (515)
T TIGR00467 136 SQIKIALDHRKE--------------ISEILNEYRTS--------KLEENWYPISVFCENCGRDTTTVNNYDNEYSIEYS 193 (515)
T ss_pred HHHHHHHHhHHH--------------HHHHHHHhcCC--------ccCCCceeeeeecCCcCccCceEEEecCCceEEEE
Confidence 456667777777 55555553221 1127778889999999998743 37788
Q ss_pred c-c
Q 014387 422 C-C 423 (425)
Q Consensus 422 c-c 423 (425)
| |
T Consensus 194 c~c 196 (515)
T TIGR00467 194 CEC 196 (515)
T ss_pred cCC
Confidence 7 5
No 298
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=60.32 E-value=23 Score=30.64 Aligned_cols=53 Identities=11% Similarity=-0.038 Sum_probs=34.8
Q ss_pred cCC-eEEEEEe--CCCcchHHHHHHHHHHHHHH-cCCCeeEEEeccCCChhHHhhhhh
Q 014387 221 AEG-RYICLYG--GEDMDWIRKFTTATNAVAKT-AGIPLGMVYVGKSNPKDRVRRNND 274 (425)
Q Consensus 221 ~eg-k~I~lY~--g~d~~w~r~FT~~l~~~~k~-~~~~~Eiv~Vs~d~~~e~f~~~~~ 274 (425)
..| |.+-|+| +..|++|+.=.+.+.++++. .+..+.++.|+.|.. +..+++.+
T Consensus 25 ~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~-~~~~~~~~ 81 (149)
T cd03018 25 FRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSP-FSLRAWAE 81 (149)
T ss_pred HcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCH-HHHHHHHH
Confidence 345 6544444 45599999877777777544 346799999998753 44555543
No 299
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=60.16 E-value=19 Score=27.49 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=29.5
Q ss_pred EEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCCChhHHhh
Q 014387 227 CLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSNPKDRVRR 271 (425)
Q Consensus 227 ~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~~e~f~~ 271 (425)
-||+...|++|+.- .-++++.|+++|.+.|...+..++|.+
T Consensus 2 ~ly~~~~~p~~~rv----~~~L~~~gl~~e~~~v~~~~~~~~~~~ 42 (71)
T cd03060 2 ILYSFRRCPYAMRA----RMALLLAGITVELREVELKNKPAEMLA 42 (71)
T ss_pred EEEecCCCcHHHHH----HHHHHHcCCCcEEEEeCCCCCCHHHHH
Confidence 47888889988643 344566799999999987655455544
No 300
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=59.52 E-value=17 Score=33.79 Aligned_cols=46 Identities=4% Similarity=-0.055 Sum_probs=34.5
Q ss_pred ccCCeEEEEEe--CCCcchHHHHHHHHHHHHHH-cCCCeeEEEeccCCC
Q 014387 220 MAEGRYICLYG--GEDMDWIRKFTTATNAVAKT-AGIPLGMVYVGKSNP 265 (425)
Q Consensus 220 ~~egk~I~lY~--g~d~~w~r~FT~~l~~~~k~-~~~~~Eiv~Vs~d~~ 265 (425)
...||.+-||| ++.|++|+.=.+.+.+..+. .+..++++.||.|..
T Consensus 28 d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~ 76 (187)
T TIGR03137 28 DVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTH 76 (187)
T ss_pred HHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCH
Confidence 35788888888 66799999767777666433 345789999999865
No 301
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=59.49 E-value=25 Score=31.08 Aligned_cols=43 Identities=5% Similarity=-0.019 Sum_probs=33.9
Q ss_pred ccCCeEEEEEeCCC-cchHHHHHHHHHHHHHHc-CCCeeEEEecc
Q 014387 220 MAEGRYICLYGGED-MDWIRKFTTATNAVAKTA-GIPLGMVYVGK 262 (425)
Q Consensus 220 ~~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~-~~~~Eiv~Vs~ 262 (425)
-..||.+.|++-+. |++|+.=-+.|.++.++. +..++++-|+.
T Consensus 19 ~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 19 KYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred HhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence 35788877777666 999999999999886553 45799999984
No 302
>COG4481 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.21 E-value=5.1 Score=30.66 Aligned_cols=28 Identities=32% Similarity=0.801 Sum_probs=19.1
Q ss_pred CCCCCcc--ceecCCCCCCCCceeecCCCCcc
Q 014387 384 HTPHHCN--RLVLPGTAGKIPERIICSECGRV 413 (425)
Q Consensus 384 ~~~~~c~--~~~~~~~~g~i~~~i~C~~C~r~ 413 (425)
+-||+|. |..+--.-.+| +|+|.+|||+
T Consensus 14 KK~H~Cg~NrwkIiRvGaDI--kikC~nC~h~ 43 (60)
T COG4481 14 KKPHACGTNRWKIIRVGADI--KIKCENCGHS 43 (60)
T ss_pred cCCCccccceEEEEEecCcE--EEEecCCCcE
Confidence 4488884 55554333344 7999999986
No 303
>PF13728 TraF: F plasmid transfer operon protein
Probab=58.81 E-value=16 Score=35.07 Aligned_cols=32 Identities=9% Similarity=0.114 Sum_probs=27.0
Q ss_pred CCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCC
Q 014387 231 GEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSN 264 (425)
Q Consensus 231 g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~ 264 (425)
..+|+-|+.|.+.|..+++.. .|++++||.|.
T Consensus 129 ~~~C~~C~~~~pil~~~~~~y--g~~v~~vs~DG 160 (215)
T PF13728_consen 129 RSDCPYCQQQAPILQQFADKY--GFSVIPVSLDG 160 (215)
T ss_pred cCCCchhHHHHHHHHHHHHHh--CCEEEEEecCC
Confidence 446999999999999997654 67899999984
No 304
>PRK10329 glutaredoxin-like protein; Provisional
Probab=58.81 E-value=20 Score=28.87 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=27.6
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccC
Q 014387 226 ICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKS 263 (425)
Q Consensus 226 I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d 263 (425)
|-||...+|++|+. +++.+.+.|++||.+-|..+
T Consensus 3 v~lYt~~~Cp~C~~----ak~~L~~~gI~~~~idi~~~ 36 (81)
T PRK10329 3 ITIYTRNDCVQCHA----TKRAMESRGFDFEMINVDRV 36 (81)
T ss_pred EEEEeCCCCHhHHH----HHHHHHHCCCceEEEECCCC
Confidence 66999999999965 55555677999999999876
No 305
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=58.64 E-value=21 Score=27.19 Aligned_cols=15 Identities=0% Similarity=-0.241 Sum_probs=12.8
Q ss_pred EEEecCCChHhHHHH
Q 014387 68 LLISDLDISQEEVII 82 (425)
Q Consensus 68 L~FsAsWC~pCr~~~ 82 (425)
..|+.++||.|..-.
T Consensus 3 ~ly~~~~Cp~C~~ak 17 (75)
T cd03418 3 EIYTKPNCPYCVRAK 17 (75)
T ss_pred EEEeCCCChHHHHHH
Confidence 468999999999865
No 306
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=58.00 E-value=32 Score=30.47 Aligned_cols=42 Identities=7% Similarity=-0.010 Sum_probs=33.3
Q ss_pred cCCeEEEEEeCCC-cchHHHHHHHHHHHHHH-cCCCeeEEEeccC
Q 014387 221 AEGRYICLYGGED-MDWIRKFTTATNAVAKT-AGIPLGMVYVGKS 263 (425)
Q Consensus 221 ~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~-~~~~~Eiv~Vs~d 263 (425)
..||.+.|+|-+. |+ |+.=.+.|.++.++ .+..++++-|+.+
T Consensus 20 ~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 20 YKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred hCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 4689998988777 98 99888888888654 3467999999865
No 307
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=57.79 E-value=33 Score=27.89 Aligned_cols=21 Identities=10% Similarity=0.221 Sum_probs=14.3
Q ss_pred cCCCEEEEEEec-----CCChHhHHHH
Q 014387 61 LRRKMVLLLISD-----LDISQEEVII 82 (425)
Q Consensus 61 LkGK~VlL~FsA-----sWC~pCr~~~ 82 (425)
++.+.|+|+ +. +|||.|..-.
T Consensus 5 i~~~~vvvf-~k~~~~~~~Cp~C~~ak 30 (90)
T cd03028 5 IKENPVVLF-MKGTPEEPRCGFSRKVV 30 (90)
T ss_pred hccCCEEEE-EcCCCCCCCCcHHHHHH
Confidence 455666665 43 6999998754
No 308
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=57.57 E-value=18 Score=28.22 Aligned_cols=34 Identities=12% Similarity=0.264 Sum_probs=26.4
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccC
Q 014387 226 ICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKS 263 (425)
Q Consensus 226 I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d 263 (425)
|-+|+...|++|+ .+++++++.++++|.+-|.++
T Consensus 1 v~ly~~~~Cp~C~----~a~~~L~~~~i~~~~~di~~~ 34 (79)
T TIGR02181 1 VTIYTKPYCPYCT----RAKALLSSKGVTFTEIRVDGD 34 (79)
T ss_pred CEEEecCCChhHH----HHHHHHHHcCCCcEEEEecCC
Confidence 4588888899995 455666677999999988765
No 309
>PRK10329 glutaredoxin-like protein; Provisional
Probab=57.54 E-value=27 Score=28.14 Aligned_cols=15 Identities=13% Similarity=-0.017 Sum_probs=12.2
Q ss_pred EEEecCCChHhHHHH
Q 014387 68 LLISDLDISQEEVII 82 (425)
Q Consensus 68 L~FsAsWC~pCr~~~ 82 (425)
..|+..|||.|..--
T Consensus 4 ~lYt~~~Cp~C~~ak 18 (81)
T PRK10329 4 TIYTRNDCVQCHATK 18 (81)
T ss_pred EEEeCCCCHhHHHHH
Confidence 358999999999844
No 310
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=57.54 E-value=28 Score=26.91 Aligned_cols=41 Identities=15% Similarity=0.005 Sum_probs=29.6
Q ss_pred CeEEEEE-eCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccC
Q 014387 223 GRYICLY-GGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKS 263 (425)
Q Consensus 223 gk~I~lY-~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d 263 (425)
++.+.+. ++..|+.|+...+.+.+++++....++++.+...
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~ 73 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVD 73 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECC
Confidence 5565555 4555999999999999997765545666666554
No 311
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=56.45 E-value=24 Score=30.45 Aligned_cols=45 Identities=13% Similarity=0.075 Sum_probs=34.7
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCC-ChhHHhhhhh
Q 014387 226 ICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSN-PKDRVRRNND 274 (425)
Q Consensus 226 I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~-~~e~f~~~~~ 274 (425)
|-||+..+|..|| ++.+.+++.|+++|.+=+-++. +.+++++.++
T Consensus 2 i~iy~~p~C~~cr----kA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l~ 47 (113)
T cd03033 2 IIFYEKPGCANNA----RQKALLEAAGHEVEVRDLLTEPWTAETLRPFFG 47 (113)
T ss_pred EEEEECCCCHHHH----HHHHHHHHcCCCcEEeehhcCCCCHHHHHHHHH
Confidence 5699999999998 4556677889999999777765 5666666554
No 312
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=56.13 E-value=28 Score=28.30 Aligned_cols=44 Identities=11% Similarity=0.262 Sum_probs=27.6
Q ss_pred EEEEeCCC---cchHHHHHHHHHHHHHHcCCCeeEEEeccCCChhHHhhhhhhh
Q 014387 226 ICLYGGED---MDWIRKFTTATNAVAKTAGIPLGMVYVGKSNPKDRVRRNNDTI 276 (425)
Q Consensus 226 I~lY~g~d---~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~~e~f~~~~~~i 276 (425)
|+..+..+ |++| ..+++++++.+++++.+-|..| .+.++.+..+
T Consensus 12 vf~k~~~~~~~Cp~C----~~ak~~L~~~~i~y~~idv~~~---~~~~~~l~~~ 58 (90)
T cd03028 12 LFMKGTPEEPRCGFS----RKVVQILNQLGVDFGTFDILED---EEVRQGLKEY 58 (90)
T ss_pred EEEcCCCCCCCCcHH----HHHHHHHHHcCCCeEEEEcCCC---HHHHHHHHHH
Confidence 34344444 6655 5666777777999999999765 3344444433
No 313
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=55.55 E-value=22 Score=31.48 Aligned_cols=44 Identities=14% Similarity=0.110 Sum_probs=32.4
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCC-ChhHHhhhh
Q 014387 226 ICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSN-PKDRVRRNN 273 (425)
Q Consensus 226 I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~-~~e~f~~~~ 273 (425)
|-||+..+|+.||+ +.+.+++.++.++.+-+.++. +.++.++.+
T Consensus 2 i~iY~~~~C~~crk----A~~~L~~~~i~~~~~d~~~~~~s~~eL~~~l 46 (132)
T PRK13344 2 IKIYTISSCTSCKK----AKTWLNAHQLSYKEQNLGKEPLTKEEILAIL 46 (132)
T ss_pred EEEEeCCCCHHHHH----HHHHHHHcCCCeEEEECCCCCCCHHHHHHHH
Confidence 56999999999976 556667789999999887765 344444433
No 314
>PLN02412 probable glutathione peroxidase
Probab=54.94 E-value=33 Score=31.21 Aligned_cols=43 Identities=5% Similarity=-0.003 Sum_probs=34.5
Q ss_pred cCCeEEEEEeCCC-cchHHHHHHHHHHHHHH-cCCCeeEEEeccC
Q 014387 221 AEGRYICLYGGED-MDWIRKFTTATNAVAKT-AGIPLGMVYVGKS 263 (425)
Q Consensus 221 ~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~-~~~~~Eiv~Vs~d 263 (425)
..||.+.|+|-+. |++|+.-.+.|.++.+. .+..++++=|+.|
T Consensus 27 ~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~ 71 (167)
T PLN02412 27 YKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCN 71 (167)
T ss_pred hCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccc
Confidence 4789988888555 99999888889888544 4456999999976
No 315
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=54.82 E-value=22 Score=29.60 Aligned_cols=44 Identities=25% Similarity=0.323 Sum_probs=32.9
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCCC-hhHHhhhh
Q 014387 226 ICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSNP-KDRVRRNN 273 (425)
Q Consensus 226 I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~-~e~f~~~~ 273 (425)
|-||+..+|+.||+ +.+.+++.++++|.+-+.++.. .+++++..
T Consensus 1 i~iY~~~~C~~c~k----a~~~L~~~~i~~~~idi~~~~~~~~~l~~~~ 45 (105)
T cd02977 1 ITIYGNPNCSTSRK----ALAWLEEHGIEYEFIDYLKEPPTKEELKELL 45 (105)
T ss_pred CEEEECCCCHHHHH----HHHHHHHcCCCcEEEeeccCCCCHHHHHHHH
Confidence 35899999999964 5566677899999999987654 45555544
No 316
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=54.65 E-value=31 Score=28.29 Aligned_cols=48 Identities=17% Similarity=0.015 Sum_probs=31.2
Q ss_pred CCeEEEEEeCCCcchHHHHHHHHHHHHHHc-CCCeeEEEeccCCChhHHhh
Q 014387 222 EGRYICLYGGEDMDWIRKFTTATNAVAKTA-GIPLGMVYVGKSNPKDRVRR 271 (425)
Q Consensus 222 egk~I~lY~g~d~~w~r~FT~~l~~~~k~~-~~~~Eiv~Vs~d~~~e~f~~ 271 (425)
+.-.|-+|.+..|+||+.--+.+.+++... ++.++++= -+...+..++
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd--~~~~~e~a~~ 60 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMID--GALFQDEVEE 60 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEE--hHhCHHHHHH
Confidence 344688888888999998888888886553 45555544 4433444443
No 317
>PHA02125 thioredoxin-like protein
Probab=54.47 E-value=25 Score=27.47 Aligned_cols=31 Identities=13% Similarity=0.050 Sum_probs=20.2
Q ss_pred EEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEeccCC
Q 014387 228 LYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGKSN 264 (425)
Q Consensus 228 lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~ 264 (425)
+||++. |++|+.+-+.|.++ .++.+-|..|.
T Consensus 3 v~f~a~wC~~Ck~~~~~l~~~------~~~~~~vd~~~ 34 (75)
T PHA02125 3 YLFGAEWCANCKMVKPMLANV------EYTYVDVDTDE 34 (75)
T ss_pred EEEECCCCHhHHHHHHHHHHH------hheEEeeeCCC
Confidence 455555 99999999988654 24445555443
No 318
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=54.23 E-value=32 Score=33.69 Aligned_cols=43 Identities=2% Similarity=-0.024 Sum_probs=35.3
Q ss_pred cCCeEEEEEeCCC-cchHHHHHHHHHHHHHH-cCCCeeEEEeccC
Q 014387 221 AEGRYICLYGGED-MDWIRKFTTATNAVAKT-AGIPLGMVYVGKS 263 (425)
Q Consensus 221 ~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~-~~~~~Eiv~Vs~d 263 (425)
..||.+.|+|-+. |++|+.=.+.|.++.++ .+..+++|-|+.+
T Consensus 97 ~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d 141 (236)
T PLN02399 97 FKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCN 141 (236)
T ss_pred hCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 4689988888777 99999999999999544 4556999999964
No 319
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=54.21 E-value=73 Score=27.61 Aligned_cols=31 Identities=16% Similarity=0.177 Sum_probs=23.1
Q ss_pred hHHHHHHHHhCCCCC-CCeEEEECCCCcEEcc
Q 014387 143 RAVIQFIKEEWQFGK-KPILVVLDPHGKVVCP 173 (425)
Q Consensus 143 ~~~~~~L~~~f~v~~-iPtlVvLD~~GkVv~~ 173 (425)
..-...|.+.|++.. --++|+|+++|.+-.+
T Consensus 63 ~~~~~~lr~~l~~~~~~f~~vLiGKDG~vK~r 94 (118)
T PF13778_consen 63 PEDIQALRKRLRIPPGGFTVVLIGKDGGVKLR 94 (118)
T ss_pred HHHHHHHHHHhCCCCCceEEEEEeCCCcEEEe
Confidence 344568889999753 3578999999988654
No 320
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=53.55 E-value=58 Score=27.07 Aligned_cols=21 Identities=10% Similarity=0.075 Sum_probs=14.2
Q ss_pred CCCEEEEEEe----cCCChHhHHHH
Q 014387 62 RRKMVLLLIS----DLDISQEEVII 82 (425)
Q Consensus 62 kGK~VlL~Fs----AsWC~pCr~~~ 82 (425)
..+.|+||-. ++|||.|..--
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak 34 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAV 34 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHH
Confidence 4456666544 38999998754
No 321
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=52.44 E-value=28 Score=37.52 Aligned_cols=45 Identities=4% Similarity=-0.051 Sum_probs=36.3
Q ss_pred cCCeEEEEEeCCC-cchHHHHHHHHHHHHHHc-CCCeeEEEeccCCC
Q 014387 221 AEGRYICLYGGED-MDWIRKFTTATNAVAKTA-GIPLGMVYVGKSNP 265 (425)
Q Consensus 221 ~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~-~~~~Eiv~Vs~d~~ 265 (425)
..++.+.|+|.+. |++|+.+.+.+.++++.. +..+.++.|.-|.+
T Consensus 369 ~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~ 415 (463)
T TIGR00424 369 ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGD 415 (463)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCC
Confidence 3788999999999 999999999999997664 34477777776644
No 322
>PF13408 Zn_ribbon_recom: Recombinase zinc beta ribbon domain
Probab=52.38 E-value=6.6 Score=28.94 Aligned_cols=14 Identities=29% Similarity=0.781 Sum_probs=11.9
Q ss_pred ceeecCCCCcccce
Q 014387 403 ERIICSECGRVMEK 416 (425)
Q Consensus 403 ~~i~C~~C~r~Me~ 416 (425)
..+.|++||+.|=.
T Consensus 4 g~l~C~~CG~~m~~ 17 (58)
T PF13408_consen 4 GLLRCGHCGSKMTR 17 (58)
T ss_pred CcEEcccCCcEeEE
Confidence 46899999999954
No 323
>PRK12559 transcriptional regulator Spx; Provisional
Probab=52.32 E-value=36 Score=30.12 Aligned_cols=44 Identities=16% Similarity=0.124 Sum_probs=32.2
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCC-ChhHHhhhh
Q 014387 226 ICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSN-PKDRVRRNN 273 (425)
Q Consensus 226 I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~-~~e~f~~~~ 273 (425)
|-||+...|+.||+ +.+.+++.|++++.+-+.++. +.++.++.+
T Consensus 2 i~iY~~~~C~~crk----A~~~L~~~gi~~~~~di~~~~~s~~el~~~l 46 (131)
T PRK12559 2 VVLYTTASCASCRK----AKAWLEENQIDYTEKNIVSNSMTVDELKSIL 46 (131)
T ss_pred EEEEeCCCChHHHH----HHHHHHHcCCCeEEEEeeCCcCCHHHHHHHH
Confidence 66999999999975 555567789999999887664 344444443
No 324
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=52.28 E-value=31 Score=31.90 Aligned_cols=40 Identities=8% Similarity=-0.027 Sum_probs=29.2
Q ss_pred CeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEeccC
Q 014387 223 GRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGKS 263 (425)
Q Consensus 223 gk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d 263 (425)
++.+.++|.++ |++|+.+.+.|.++++... .+-.+.|..+
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d 123 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRAS 123 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEecc
Confidence 45888899888 9999999999999976643 3333444333
No 325
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=52.20 E-value=6.6 Score=24.99 Aligned_cols=13 Identities=38% Similarity=0.889 Sum_probs=10.5
Q ss_pred ceeecCCCCcccc
Q 014387 403 ERIICSECGRVME 415 (425)
Q Consensus 403 ~~i~C~~C~r~Me 415 (425)
+.+.||.|||.+.
T Consensus 1 ~l~~C~~CgR~F~ 13 (25)
T PF13913_consen 1 ELVPCPICGRKFN 13 (25)
T ss_pred CCCcCCCCCCEEC
Confidence 4678999999764
No 326
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=51.98 E-value=47 Score=24.42 Aligned_cols=33 Identities=18% Similarity=0.121 Sum_probs=22.5
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEecc
Q 014387 226 ICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGK 262 (425)
Q Consensus 226 I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~ 262 (425)
|-||++..|++|+.-.+.+ ++.+..++.+=+..
T Consensus 2 i~lf~~~~C~~C~~~~~~l----~~~~i~~~~vdi~~ 34 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYL----TSKGIAFEEIDVEK 34 (74)
T ss_pred EEEEcCCCChhHHHHHHHH----HHCCCeEEEEeccC
Confidence 5688888899998755444 44566666655543
No 327
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=51.81 E-value=20 Score=38.91 Aligned_cols=54 Identities=24% Similarity=0.468 Sum_probs=35.4
Q ss_pred chhHHHHHHHhhhhhhccCCCCCcHHHHHHhhccCCCCCCccceecCCCCCCCCceeecCCCCccccee----------e
Q 014387 349 GAIFLTCMQEYNTVWKDQVEPKGFMPAMRDHLGQLHTPHHCNRLVLPGTAGKIPERIICSECGRVMEKF----------L 418 (425)
Q Consensus 349 g~~~~~~~~~f~~~Wk~~v~~~gf~~a~~~~~~~~~~~~~c~~~~~~~~~g~i~~~i~C~~C~r~Me~~----------~ 418 (425)
-+.+...|.+++. +++-+.+.... + -..+.+|=...||+|||...+- |
T Consensus 142 ~~~i~~~l~~~~~--------------i~~il~~~~~~------~--~~~~~~P~~pic~~cg~~~~~~~~~~d~~~~~v 199 (510)
T PRK00750 142 DEAILTALENRDE--------------IMEILLPYLGE------E--RQATYSPFLPICPKCGKVLTTPVISYDAEAGTV 199 (510)
T ss_pred HHHHHHHHHhHHH--------------HHHHHHHhcCC------c--cCCCeeeeeeeCCCCCccceEEEEEEeCCCCEE
Confidence 4556666667766 55555542211 1 2277889999999999998643 5
Q ss_pred eeec-cC
Q 014387 419 MYRC-CD 424 (425)
Q Consensus 419 ~y~c-c~ 424 (425)
.|.| |.
T Consensus 200 ~y~~~cG 206 (510)
T PRK00750 200 TYDCECG 206 (510)
T ss_pred EEEcCCC
Confidence 7777 53
No 328
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=51.65 E-value=42 Score=26.96 Aligned_cols=43 Identities=12% Similarity=0.302 Sum_probs=31.5
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCCChhHHhhhh
Q 014387 226 ICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSNPKDRVRRNN 273 (425)
Q Consensus 226 I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~~e~f~~~~ 273 (425)
|-+|.-..||+|. .+.+++...|.+++.+.|..+.. +.-++++
T Consensus 3 v~iyt~~~CPyC~----~ak~~L~~~g~~~~~i~~~~~~~-~~~~~~~ 45 (80)
T COG0695 3 VTIYTKPGCPYCK----RAKRLLDRKGVDYEEIDVDDDEP-EEAREMV 45 (80)
T ss_pred EEEEECCCCchHH----HHHHHHHHcCCCcEEEEecCCcH-HHHHHHH
Confidence 5677777799994 45566677899999999999975 3333433
No 329
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=50.76 E-value=26 Score=32.46 Aligned_cols=50 Identities=12% Similarity=0.198 Sum_probs=34.1
Q ss_pred CCeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEeccCCChhHHhhhh
Q 014387 222 EGRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGKSNPKDRVRRNN 273 (425)
Q Consensus 222 egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~~e~f~~~~ 273 (425)
+++....+|++- |+.|++|.+.+.+ ...+..+.++.++-....++..+..
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~--~~~~v~v~~~~~p~~~~~~s~~~a~ 126 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP--NADGVTVRIFPVPILGLPDSTAKAA 126 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh--ccCceEEEEEEcCcCCCccHHHHHH
Confidence 456655566655 9999999999877 3457788888887655334444433
No 330
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=50.66 E-value=27 Score=38.41 Aligned_cols=45 Identities=13% Similarity=0.067 Sum_probs=31.4
Q ss_pred ccCCeEEEEEeCCC-cchHHHHHHHH---HHHHHHcCCCeeEEEeccCCC
Q 014387 220 MAEGRYICLYGGED-MDWIRKFTTAT---NAVAKTAGIPLGMVYVGKSNP 265 (425)
Q Consensus 220 ~~egk~I~lY~g~d-~~w~r~FT~~l---~~~~k~~~~~~Eiv~Vs~d~~ 265 (425)
-.+||.+.++|.++ |.+||.+.+.. .++.++.+ ++.++.|.-+++
T Consensus 471 ~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~ 519 (571)
T PRK00293 471 KGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTAN 519 (571)
T ss_pred HhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCC
Confidence 35689999999999 99999987754 44544433 455666655543
No 331
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=50.31 E-value=15 Score=27.95 Aligned_cols=28 Identities=32% Similarity=0.656 Sum_probs=20.9
Q ss_pred Cccc-eecCCCCCCCCceeecCCCCccccee
Q 014387 388 HCNR-LVLPGTAGKIPERIICSECGRVMEKF 417 (425)
Q Consensus 388 ~c~~-~~~~~~~g~i~~~i~C~~C~r~Me~~ 417 (425)
.|.. +.+|.... -+.+.||+||-..|+.
T Consensus 7 ~CG~~iev~~~~~--GeiV~Cp~CGaeleVv 35 (54)
T TIGR01206 7 DCGAEIELENPEL--GELVICDECGAELEVV 35 (54)
T ss_pred CCCCEEecCCCcc--CCEEeCCCCCCEEEEE
Confidence 3666 77775432 7789999999999884
No 332
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=50.30 E-value=28 Score=26.93 Aligned_cols=34 Identities=9% Similarity=-0.005 Sum_probs=23.6
Q ss_pred EEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEec
Q 014387 228 LYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVG 261 (425)
Q Consensus 228 lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs 261 (425)
+|+.=.|+||+.+-+.+.++.+....+++++++.
T Consensus 3 ~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~ 36 (98)
T cd02972 3 EFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRP 36 (98)
T ss_pred EEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEec
Confidence 4555569999999999999854444444444443
No 333
>PTZ00256 glutathione peroxidase; Provisional
Probab=49.49 E-value=43 Score=30.83 Aligned_cols=43 Identities=12% Similarity=0.013 Sum_probs=32.4
Q ss_pred cCCeE--EEEEeCCCcchHHHHHHHHHHHHHH-cCCCeeEEEeccC
Q 014387 221 AEGRY--ICLYGGEDMDWIRKFTTATNAVAKT-AGIPLGMVYVGKS 263 (425)
Q Consensus 221 ~egk~--I~lY~g~d~~w~r~FT~~l~~~~k~-~~~~~Eiv~Vs~d 263 (425)
..||. +.++....|++|++=.+.+.++.+. .+..++++-|+.|
T Consensus 38 ~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 38 FKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred hCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 46874 3556655699999999999988554 3456999999864
No 334
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=49.40 E-value=29 Score=34.29 Aligned_cols=41 Identities=15% Similarity=0.154 Sum_probs=31.0
Q ss_pred cCCeEEEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCC
Q 014387 221 AEGRYICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSN 264 (425)
Q Consensus 221 ~egk~I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~ 264 (425)
.+...+++|. .+|+-|++|.+.|..+++..| |+++-||-|.
T Consensus 143 ~~~GL~fFy~-s~Cp~C~~~aPil~~fa~~yg--~~v~~VS~DG 183 (248)
T PRK13703 143 EHYGLMFFYR-GQDPIDGQLAQVINDFRDTYG--LSVIPVSVDG 183 (248)
T ss_pred hcceEEEEEC-CCCchhHHHHHHHHHHHHHhC--CeEEEEecCC
Confidence 3444555554 559999999999999966544 5899999885
No 335
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=49.18 E-value=31 Score=26.88 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=26.1
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccC
Q 014387 226 ICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKS 263 (425)
Q Consensus 226 I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d 263 (425)
+=||+...|++|++ ++.++.+.|+++|.+-|+.+
T Consensus 2 ~~Ly~~~~sp~~~k----v~~~L~~~gi~y~~~~v~~~ 35 (77)
T cd03041 2 LELYEFEGSPFCRL----VREVLTELELDVILYPCPKG 35 (77)
T ss_pred ceEecCCCCchHHH----HHHHHHHcCCcEEEEECCCC
Confidence 34899999998874 44445677999999999754
No 336
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=49.14 E-value=11 Score=31.86 Aligned_cols=25 Identities=8% Similarity=0.030 Sum_probs=21.0
Q ss_pred cccCCeEEEEEeCCC-cchHHHHHHH
Q 014387 219 WMAEGRYICLYGGED-MDWIRKFTTA 243 (425)
Q Consensus 219 ~~~egk~I~lY~g~d-~~w~r~FT~~ 243 (425)
.-.++|.+.||+.++ |++|+.|...
T Consensus 13 Ak~~~K~llv~~~~~~c~~c~~~~~~ 38 (114)
T cd02958 13 AKSEKKWLLVYLQSEDEFDSQVLNRD 38 (114)
T ss_pred HHhhCceEEEEEecCCcchHHHHHHH
Confidence 346899999999777 9999999764
No 337
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=47.89 E-value=40 Score=25.92 Aligned_cols=34 Identities=12% Similarity=0.193 Sum_probs=27.0
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccC
Q 014387 226 ICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKS 263 (425)
Q Consensus 226 I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d 263 (425)
|-||+...|++|+ ++.+++++.++++|.+=|.++
T Consensus 3 v~ly~~~~C~~C~----ka~~~L~~~gi~~~~~di~~~ 36 (73)
T cd03027 3 VTIYSRLGCEDCT----AVRLFLREKGLPYVEINIDIF 36 (73)
T ss_pred EEEEecCCChhHH----HHHHHHHHCCCceEEEECCCC
Confidence 5588888899995 455666778999999988775
No 338
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=47.82 E-value=41 Score=29.28 Aligned_cols=43 Identities=12% Similarity=0.007 Sum_probs=32.4
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHHHc--CCCeeEEEeccCCChh
Q 014387 225 YICLYGGEDMDWIRKFTTATNAVAKTA--GIPLGMVYVGKSNPKD 267 (425)
Q Consensus 225 ~I~lY~g~d~~w~r~FT~~l~~~~k~~--~~~~Eiv~Vs~d~~~e 267 (425)
.|-+|++=.||.|++|-..+.++++.. +..+.++|+.---+..
T Consensus 15 ~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~ 59 (162)
T PF13462_consen 15 TVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKH 59 (162)
T ss_dssp EEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHH
T ss_pred EEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccch
Confidence 577777777999999999999887664 6788888886644433
No 339
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=47.57 E-value=42 Score=23.96 Aligned_cols=35 Identities=17% Similarity=0.137 Sum_probs=26.3
Q ss_pred EEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCCCh
Q 014387 228 LYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSNPK 266 (425)
Q Consensus 228 lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~~ 266 (425)
||+...|++|+ ++..+++..+++++.+.+..++..
T Consensus 3 ly~~~~~~~~~----~~~~~l~~~~i~~~~~~~~~~~~~ 37 (71)
T cd00570 3 LYYFPGSPRSL----RVRLALEEKGLPYELVPVDLGEGE 37 (71)
T ss_pred EEeCCCCccHH----HHHHHHHHcCCCcEEEEeCCCCCC
Confidence 67777788886 455556777999999999876543
No 340
>PLN02309 5'-adenylylsulfate reductase
Probab=46.26 E-value=46 Score=35.83 Aligned_cols=43 Identities=5% Similarity=-0.030 Sum_probs=35.8
Q ss_pred cCCeEEEEEeCCC-cchHHHHHHHHHHHHHHc-CCCeeEEEeccC
Q 014387 221 AEGRYICLYGGED-MDWIRKFTTATNAVAKTA-GIPLGMVYVGKS 263 (425)
Q Consensus 221 ~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~-~~~~Eiv~Vs~d 263 (425)
..++.+.|+|.+. |++||.+.+.+.++++.. +..+.+.-|.-|
T Consensus 363 ~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d 407 (457)
T PLN02309 363 NRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRAD 407 (457)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECC
Confidence 4789999999999 999999999999997663 455777777766
No 341
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=46.19 E-value=44 Score=33.26 Aligned_cols=91 Identities=21% Similarity=0.218 Sum_probs=55.7
Q ss_pred CCCEEEEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHHHHHHHHHHhCCCceeeccCc
Q 014387 62 RRKMVLLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNKQKQFQSLQSAMPWYTVYHPS 139 (425)
Q Consensus 62 kGK~VlL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~~~~F~~~~~~mPW~aV~~p~ 139 (425)
++-.|++.|+-..++.|+... |..+-.++. ...+|=|.. . ..|
T Consensus 145 ~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp--------~vKFvkI~a--------~-----------~~~-------- 189 (265)
T PF02114_consen 145 KSTWVVVHIYEPGFPRCEIMNSCLECLARKYP--------EVKFVKIRA--------S-----------KCP-------- 189 (265)
T ss_dssp TT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T--------TSEEEEEEE--------C-----------GCC--------
T ss_pred CCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC--------ceEEEEEeh--------h-----------ccC--------
Confidence 456899999999999999977 888888874 244554431 0 001
Q ss_pred ccChHHHHHHHHhCCCCCCCeEEEECCCCcEEccccchhhhhcCCccCCCCchhHHHhhhhc
Q 014387 140 LIDRAVIQFIKEEWQFGKKPILVVLDPHGKVVCPNALHMMWIWGSLAYPFSTAREEALWREE 201 (425)
Q Consensus 140 l~D~~~~~~L~~~f~v~~iPtlVvLD~~GkVv~~na~~~I~~~g~~aFPft~~~~~~L~~~~ 201 (425)
+...|..+++|+++|.- +|.++. |-+.+. +.|++. |+..+.|.++.+.
T Consensus 190 ---------~~~~f~~~~LPtllvYk-~G~l~~-~~V~l~-~~~g~d--f~~~dlE~~L~~~ 237 (265)
T PF02114_consen 190 ---------ASENFPDKNLPTLLVYK-NGDLIG-NFVGLT-DLLGDD--FFTEDLEAFLIEY 237 (265)
T ss_dssp ---------TTTTS-TTC-SEEEEEE-TTEEEE-EECTGG-GCT-TT----HHHHHHHHHTT
T ss_pred ---------cccCCcccCCCEEEEEE-CCEEEE-eEEehH-HhcCCC--CCHHHHHHHHHHc
Confidence 12346778899999986 787764 444433 334443 7888999888764
No 342
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=45.84 E-value=45 Score=25.23 Aligned_cols=33 Identities=27% Similarity=0.118 Sum_probs=25.0
Q ss_pred EEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccC
Q 014387 227 CLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKS 263 (425)
Q Consensus 227 ~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d 263 (425)
-||+...|+.|+ ++..++++.|++||.+.|...
T Consensus 2 ~Ly~~~~~~~~~----~v~~~l~~~gi~~e~~~i~~~ 34 (74)
T cd03045 2 DLYYLPGSPPCR----AVLLTAKALGLELNLKEVNLM 34 (74)
T ss_pred EEEeCCCCCcHH----HHHHHHHHcCCCCEEEEecCc
Confidence 378888888776 444556777999999999754
No 343
>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.64 E-value=9.3 Score=30.14 Aligned_cols=16 Identities=19% Similarity=0.553 Sum_probs=13.5
Q ss_pred CCceeecCCCCcccce
Q 014387 401 IPERIICSECGRVMEK 416 (425)
Q Consensus 401 i~~~i~C~~C~r~Me~ 416 (425)
..-++.||.||++.+-
T Consensus 4 ~~~~v~CP~Cgkpv~w 19 (65)
T COG3024 4 LRITVPCPTCGKPVVW 19 (65)
T ss_pred ccccccCCCCCCcccc
Confidence 3568999999999886
No 344
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=45.39 E-value=15 Score=29.49 Aligned_cols=25 Identities=24% Similarity=0.715 Sum_probs=16.4
Q ss_pred CCCceeecCCCCccccee-----eeeeccC
Q 014387 400 KIPERIICSECGRVMEKF-----LMYRCCD 424 (425)
Q Consensus 400 ~i~~~i~C~~C~r~Me~~-----~~y~cc~ 424 (425)
+......||+|+.++|+. +.|-|=|
T Consensus 26 ~~~~~a~CPdC~~~Le~LkACGAvdYFC~~ 55 (70)
T PF07191_consen 26 DYKKEAFCPDCGQPLEVLKACGAVDYFCNH 55 (70)
T ss_dssp EEEEEEE-TTT-SB-EEEEETTEEEEE-TT
T ss_pred cceecccCCCcccHHHHHHHhcccceeecc
Confidence 456678999999999995 7888744
No 345
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=44.68 E-value=60 Score=26.11 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=31.8
Q ss_pred CCeEEEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCCChhHHhh
Q 014387 222 EGRYICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSNPKDRVRR 271 (425)
Q Consensus 222 egk~I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~~e~f~~ 271 (425)
.-..+-||+...|++|+. +.-++...|+++|.+-+..++..+.|.+
T Consensus 15 ~~~~~~Ly~~~~sp~~~k----v~~~L~~~gl~~~~~~v~~~~~~~~~~~ 60 (89)
T cd03055 15 VPGIIRLYSMRFCPYAQR----ARLVLAAKNIPHEVININLKDKPDWFLE 60 (89)
T ss_pred CCCcEEEEeCCCCchHHH----HHHHHHHcCCCCeEEEeCCCCCcHHHHh
Confidence 334578898888999973 3444566799999998876554444443
No 346
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=44.56 E-value=49 Score=29.15 Aligned_cols=44 Identities=18% Similarity=0.173 Sum_probs=32.3
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCCC-hhHHhhhh
Q 014387 226 ICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSNP-KDRVRRNN 273 (425)
Q Consensus 226 I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~-~e~f~~~~ 273 (425)
|-||+...|+.||+ +.+.+.+.|++++.+-+..+.. .+++.+.+
T Consensus 2 i~iY~~~~C~~C~k----a~~~L~~~gi~~~~idi~~~~~~~~eL~~~l 46 (131)
T PRK01655 2 VTLFTSPSCTSCRK----AKAWLEEHDIPFTERNIFSSPLTIDEIKQIL 46 (131)
T ss_pred EEEEeCCCChHHHH----HHHHHHHcCCCcEEeeccCChhhHHHHHHHH
Confidence 56999999999965 5566677799999998877653 34444444
No 347
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=44.46 E-value=47 Score=28.23 Aligned_cols=44 Identities=9% Similarity=0.125 Sum_probs=32.3
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCC-ChhHHhhhh
Q 014387 226 ICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSN-PKDRVRRNN 273 (425)
Q Consensus 226 I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~-~~e~f~~~~ 273 (425)
|-||+...|+.|| ++.+.+++.|++|+.+-+..+. +.+++++.+
T Consensus 1 i~iY~~~~C~~c~----ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~ 45 (111)
T cd03036 1 LKFYEYPKCSTCR----KAKKWLDEHGVDYTAIDIVEEPPSKEELKKWL 45 (111)
T ss_pred CEEEECCCCHHHH----HHHHHHHHcCCceEEecccCCcccHHHHHHHH
Confidence 3489999999885 4556667779999999998876 344455444
No 348
>PF14369 zf-RING_3: zinc-finger
Probab=44.27 E-value=17 Score=25.05 Aligned_cols=24 Identities=29% Similarity=0.706 Sum_probs=14.4
Q ss_pred CCccceecCCCCCCCCceeecCCCCc
Q 014387 387 HHCNRLVLPGTAGKIPERIICSECGR 412 (425)
Q Consensus 387 ~~c~~~~~~~~~g~i~~~i~C~~C~r 412 (425)
|.|++.+-+...+ .+.+.||.|+-
T Consensus 6 h~C~~~V~~~~~~--~~~~~CP~C~~ 29 (35)
T PF14369_consen 6 HQCNRFVRIAPSP--DSDVACPRCHG 29 (35)
T ss_pred ccCCCEeEeCcCC--CCCcCCcCCCC
Confidence 6799866543221 12247999973
No 349
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=43.87 E-value=58 Score=27.82 Aligned_cols=42 Identities=5% Similarity=-0.070 Sum_probs=33.0
Q ss_pred CCeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEeccCC
Q 014387 222 EGRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGKSN 264 (425)
Q Consensus 222 egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~ 264 (425)
.+|.|-++|.+. |+|||.--|.+.+++..-.. ...+-|.=|.
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde 62 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDE 62 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEeccc
Confidence 369999999888 99999999999999766333 6666666653
No 350
>PRK02935 hypothetical protein; Provisional
Probab=43.85 E-value=13 Score=32.26 Aligned_cols=21 Identities=19% Similarity=0.643 Sum_probs=15.4
Q ss_pred eeecCCCCccccee-eeeeccC
Q 014387 404 RIICSECGRVMEKF-LMYRCCD 424 (425)
Q Consensus 404 ~i~C~~C~r~Me~~-~~y~cc~ 424 (425)
.|.||+|+++...- -.+.|-|
T Consensus 70 qV~CP~C~K~TKmLGrvD~CM~ 91 (110)
T PRK02935 70 QVICPSCEKPTKMLGRVDACMH 91 (110)
T ss_pred eeECCCCCchhhhccceeecCc
Confidence 46899999988776 5566644
No 351
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=43.79 E-value=14 Score=31.55 Aligned_cols=51 Identities=18% Similarity=0.363 Sum_probs=31.3
Q ss_pred hhHHHHHHHhhhhhhccCCCCCcHHHHHHhhccCCCCCCccceecCCCCCCCCceeecCCCCccccee
Q 014387 350 AIFLTCMQEYNTVWKDQVEPKGFMPAMRDHLGQLHTPHHCNRLVLPGTAGKIPERIICSECGRVMEKF 417 (425)
Q Consensus 350 ~~~~~~~~~f~~~Wk~~v~~~gf~~a~~~~~~~~~~~~~c~~~~~~~~~g~i~~~i~C~~C~r~Me~~ 417 (425)
+|||++|..|.+ .|.. .++..+..+.++.+.. +.-=.++.|-+||++.+..
T Consensus 43 ~TVYR~L~~L~e--------~Gli-------~~~~~~~~~~~Y~~~~--~~~h~h~iC~~Cg~v~~~~ 93 (120)
T PF01475_consen 43 ATVYRTLDLLEE--------AGLI-------RKIEFGDGESRYELST--CHHHHHFICTQCGKVIDLD 93 (120)
T ss_dssp HHHHHHHHHHHH--------TTSE-------EEEEETTSEEEEEESS--SSSCEEEEETTTS-EEEE-
T ss_pred HHHHHHHHHHHH--------CCeE-------EEEEcCCCcceEeecC--CCcceEEEECCCCCEEEec
Confidence 689999999999 4432 2222233344444433 3344678999999998753
No 352
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=42.97 E-value=59 Score=27.72 Aligned_cols=45 Identities=20% Similarity=0.184 Sum_probs=32.5
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCC-ChhHHhhhhh
Q 014387 226 ICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSN-PKDRVRRNND 274 (425)
Q Consensus 226 I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~-~~e~f~~~~~ 274 (425)
|-||+..+|+.||+ +.+.+++.|+.+|.+=+.++. +.++..+.++
T Consensus 2 i~iY~~~~C~~c~k----a~~~L~~~gi~~~~idi~~~~~~~~el~~~~~ 47 (115)
T cd03032 2 IKLYTSPSCSSCRK----AKQWLEEHQIPFEERNLFKQPLTKEELKEILS 47 (115)
T ss_pred EEEEeCCCCHHHHH----HHHHHHHCCCceEEEecCCCcchHHHHHHHHH
Confidence 56899999999964 556667779999999887764 3444555443
No 353
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=42.65 E-value=41 Score=35.47 Aligned_cols=40 Identities=8% Similarity=0.174 Sum_probs=30.9
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCCChhH
Q 014387 225 YICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSNPKDR 268 (425)
Q Consensus 225 ~I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~~e~ 268 (425)
.|-+|....||+|+ .+++.++..|+++|.+-|+++....+
T Consensus 3 ~V~vys~~~Cp~C~----~aK~~L~~~gi~~~~idi~~~~~~~~ 42 (410)
T PRK12759 3 EVRIYTKTNCPFCD----LAKSWFGANDIPFTQISLDDDVKRAE 42 (410)
T ss_pred cEEEEeCCCCHHHH----HHHHHHHHCCCCeEEEECCCChhHHH
Confidence 47899999999995 45566677799999999986654333
No 354
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=42.46 E-value=49 Score=24.87 Aligned_cols=41 Identities=22% Similarity=0.446 Sum_probs=28.3
Q ss_pred EEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCCChhHHhh
Q 014387 227 CLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSNPKDRVRR 271 (425)
Q Consensus 227 ~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~~e~f~~ 271 (425)
-||+...|+.|+.-. .+++..|.++|.+.|..++..+.|++
T Consensus 2 ~ly~~~~~~~~~~v~----~~l~~~gi~~~~~~v~~~~~~~~~~~ 42 (73)
T cd03059 2 TLYSGPDDVYSHRVR----IVLAEKGVSVEIIDVDPDNPPEDLAE 42 (73)
T ss_pred EEEECCCChhHHHHH----HHHHHcCCccEEEEcCCCCCCHHHHh
Confidence 378777888776543 33566799999999986654445544
No 355
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=42.36 E-value=55 Score=24.05 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=24.3
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccC
Q 014387 226 ICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKS 263 (425)
Q Consensus 226 I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d 263 (425)
|-+|++..|++|+.....| ++.+.+++.+-+..+
T Consensus 2 v~l~~~~~c~~c~~~~~~l----~~~~i~~~~~~i~~~ 35 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFL----DERGIPFEEVDVDED 35 (73)
T ss_pred EEEEeCCCChhHHHHHHHH----HHCCCCeEEEeCCCC
Confidence 4578888899998755444 445888888777553
No 356
>PF10601 zf-LITAF-like: LITAF-like zinc ribbon domain; InterPro: IPR006629 Members of this family display a conserved zinc ribbon structure [] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS). The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [].
Probab=42.26 E-value=22 Score=28.03 Aligned_cols=23 Identities=30% Similarity=0.684 Sum_probs=20.4
Q ss_pred CCCCceeecCCCCcccceeeeee
Q 014387 399 GKIPERIICSECGRVMEKFLMYR 421 (425)
Q Consensus 399 g~i~~~i~C~~C~r~Me~~~~y~ 421 (425)
|+-|..+.||.|+...+..|.|+
T Consensus 2 ~~~p~~~~CP~C~~~~~T~v~~~ 24 (73)
T PF10601_consen 2 GPEPVRIYCPYCQQQVQTRVEYK 24 (73)
T ss_pred CCCceeeECCCCCCEEEEEEEEE
Confidence 67899999999999999888775
No 357
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=41.86 E-value=11 Score=24.13 Aligned_cols=13 Identities=23% Similarity=0.945 Sum_probs=7.5
Q ss_pred eeecCCCCcccce
Q 014387 404 RIICSECGRVMEK 416 (425)
Q Consensus 404 ~i~C~~C~r~Me~ 416 (425)
++.||+||...+.
T Consensus 2 ~~~Cp~Cg~~~~~ 14 (26)
T PF13248_consen 2 EMFCPNCGAEIDP 14 (26)
T ss_pred cCCCcccCCcCCc
Confidence 3567777765443
No 358
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=41.74 E-value=49 Score=26.26 Aligned_cols=39 Identities=5% Similarity=0.224 Sum_probs=29.6
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHHH-cCCCeeEEEeccC
Q 014387 225 YICLYGGEDMDWIRKFTTATNAVAKT-AGIPLGMVYVGKS 263 (425)
Q Consensus 225 ~I~lY~g~d~~w~r~FT~~l~~~~k~-~~~~~Eiv~Vs~d 263 (425)
.|-+|+...|++|++=-..|.++..+ .+++++.+-|..+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~ 41 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAE 41 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCC
Confidence 36789888899998877777776433 5788888888765
No 359
>PF06073 DUF934: Bacterial protein of unknown function (DUF934); InterPro: IPR008318 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=41.49 E-value=27 Score=30.36 Aligned_cols=72 Identities=13% Similarity=0.296 Sum_probs=53.0
Q ss_pred chHHHHHHHHHHhCCCceeeccCcccChHHH---HHHHHhCCCCCCCeEEEECCCCcEEccccchhhhhcCCccCCCCch
Q 014387 116 TDNKQKQFQSLQSAMPWYTVYHPSLIDRAVI---QFIKEEWQFGKKPILVVLDPHGKVVCPNALHMMWIWGSLAYPFSTA 192 (425)
Q Consensus 116 ~D~~~~~F~~~~~~mPW~aV~~p~l~D~~~~---~~L~~~f~v~~iPtlVvLD~~GkVv~~na~~~I~~~g~~aFPft~~ 192 (425)
+|++.+.........+-.+|.||.+.|--+- +.|++.++++|- |=.-|.|+-..... +..-|-++|-.+..
T Consensus 6 ~d~~~~~l~~~L~~l~lI~i~FP~F~DGRgfS~ArlLR~r~gy~Ge-----lRA~Gdvl~DQl~~-l~R~GFdsf~l~~~ 79 (110)
T PF06073_consen 6 PDDDPEELADDLDRLPLIAIDFPKFTDGRGFSQARLLRERYGYTGE-----LRAVGDVLRDQLFY-LRRCGFDSFELRED 79 (110)
T ss_pred CCCCHHHHHhhccCCCEEEEECCCcCCchHhHHHHHHHHHcCCCCc-----EEEeccchHHHHHH-HHHcCCCEEEeCCC
Confidence 4666667777778889999999999885332 367789999987 55678887666555 44568888887754
Q ss_pred h
Q 014387 193 R 193 (425)
Q Consensus 193 ~ 193 (425)
.
T Consensus 80 ~ 80 (110)
T PF06073_consen 80 Q 80 (110)
T ss_pred C
Confidence 3
No 360
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=41.41 E-value=42 Score=31.66 Aligned_cols=38 Identities=11% Similarity=0.112 Sum_probs=30.0
Q ss_pred CeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEeccC
Q 014387 223 GRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGKS 263 (425)
Q Consensus 223 gk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d 263 (425)
++.|.++|.++ |++|+...+.+.++++... ++.||.-+
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~---~vkFvkI~ 140 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFP---DTKFVKII 140 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCC---CCEEEEEE
Confidence 46888899888 9999999999999976632 35666554
No 361
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=41.13 E-value=31 Score=35.87 Aligned_cols=26 Identities=27% Similarity=0.733 Sum_probs=18.9
Q ss_pred CCCCCceeecCCCCcc---c------ceeeeeec-c
Q 014387 398 AGKIPERIICSECGRV---M------EKFLMYRC-C 423 (425)
Q Consensus 398 ~g~i~~~i~C~~C~r~---M------e~~~~y~c-c 423 (425)
.+..|=...||+|||. + ...|.|+| |
T Consensus 163 ~~~~P~~p~c~~cg~~~~~v~~~d~~~~~v~y~c~c 198 (353)
T cd00674 163 ETWYPFMPYCEKCGKDTTTVEAYDAKAGTVTYKCEC 198 (353)
T ss_pred CCceeeeeecCCcCcceeEEEEEeCCCCeEEEEcCC
Confidence 7788899999999963 1 12277887 5
No 362
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=38.52 E-value=86 Score=24.51 Aligned_cols=34 Identities=12% Similarity=0.190 Sum_probs=27.5
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEe
Q 014387 226 ICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYV 260 (425)
Q Consensus 226 I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~V 260 (425)
|-+ +|.+|+-|...-..+.++++..++++|++-+
T Consensus 3 I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~ 36 (76)
T PF13192_consen 3 IKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDI 36 (76)
T ss_dssp EEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEET
T ss_pred EEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEc
Confidence 455 5677999998888888887777888888887
No 363
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=38.45 E-value=13 Score=28.22 Aligned_cols=14 Identities=29% Similarity=0.807 Sum_probs=7.2
Q ss_pred ceeecCCCCcccce
Q 014387 403 ERIICSECGRVMEK 416 (425)
Q Consensus 403 ~~i~C~~C~r~Me~ 416 (425)
..-+||+|++++..
T Consensus 23 ~PatCP~C~a~~~~ 36 (54)
T PF09237_consen 23 QPATCPICGAVIRQ 36 (54)
T ss_dssp --EE-TTT--EESS
T ss_pred CCCCCCcchhhccc
Confidence 34689999998764
No 364
>KOG1088 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.03 E-value=16 Score=32.21 Aligned_cols=14 Identities=43% Similarity=0.959 Sum_probs=11.3
Q ss_pred CCceeecCCCCccc
Q 014387 401 IPERIICSECGRVM 414 (425)
Q Consensus 401 i~~~i~C~~C~r~M 414 (425)
+-...+||||||.-
T Consensus 95 ~EG~l~CpetG~vf 108 (124)
T KOG1088|consen 95 IEGELVCPETGRVF 108 (124)
T ss_pred ccceEecCCCCcEe
Confidence 56688999999964
No 365
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=37.39 E-value=66 Score=25.61 Aligned_cols=51 Identities=14% Similarity=0.151 Sum_probs=32.3
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCCChhHHhhhhhhhh
Q 014387 225 YICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSNPKDRVRRNNDTIA 277 (425)
Q Consensus 225 ~I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~~e~f~~~~~~i~ 277 (425)
.|-||+..+|.-|.+.-..|.++.. ..+|++..|.=+.+++-+.+|-..|.
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~--~~~~~l~~vDI~~d~~l~~~Y~~~IP 51 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAA--EFPFELEEVDIDEDPELFEKYGYRIP 51 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCT--TSTCEEEEEETTTTHHHHHHSCTSTS
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHh--hcCceEEEEECCCCHHHHHHhcCCCC
Confidence 3679999999999888877777633 33455555555555655665554443
No 366
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=37.30 E-value=71 Score=23.21 Aligned_cols=34 Identities=6% Similarity=0.226 Sum_probs=23.9
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccC
Q 014387 226 ICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKS 263 (425)
Q Consensus 226 I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d 263 (425)
|-+|+...|++|+.--..| ++.+++++.+=+.++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L----~~~~i~~~~~di~~~ 35 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLL----ESLGIEFEEIDILED 35 (72)
T ss_pred EEEEECCCCHHHHHHHHHH----HHcCCcEEEEECCCC
Confidence 4588888899997655444 445778887766655
No 367
>PF01396 zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc finger; InterPro: IPR013498 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry represents the zinc-finger domain found in type IA topoisomerases, including bacterial and archaeal topoisomerase I and III enzymes, and in eukaryotic topoisomerase III enzymes. Escherichia coli topoisomerase I proteins contain five copies of a zinc-ribbon-like domain at their C terminus, two of which have lost their cysteine residues and are therefore probably not able to bind zinc []. This domain is still considered to be a member of the zinc-ribbon superfamily despite not being able to bind zinc. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0005694 chromosome
Probab=37.01 E-value=15 Score=25.91 Aligned_cols=12 Identities=25% Similarity=0.623 Sum_probs=9.7
Q ss_pred eecCCCCcccce
Q 014387 405 IICSECGRVMEK 416 (425)
Q Consensus 405 i~C~~C~r~Me~ 416 (425)
..||+||..|-.
T Consensus 2 ~~CP~Cg~~lv~ 13 (39)
T PF01396_consen 2 EKCPKCGGPLVL 13 (39)
T ss_pred cCCCCCCceeEE
Confidence 579999988854
No 368
>smart00594 UAS UAS domain.
Probab=36.94 E-value=28 Score=29.94 Aligned_cols=28 Identities=14% Similarity=0.070 Sum_probs=22.5
Q ss_pred cccccCCeEEEEEeCCC-cchHHHHHHHH
Q 014387 217 LNWMAEGRYICLYGGED-MDWIRKFTTAT 244 (425)
Q Consensus 217 ~~~~~egk~I~lY~g~d-~~w~r~FT~~l 244 (425)
...-.++|.++||+.++ |++|+.|...+
T Consensus 21 ~~Ak~~~K~~lv~~~~~~c~~c~~~~r~v 49 (122)
T smart00594 21 QEASRQRRLLWLYLHSQDSPDSQVFNRDV 49 (122)
T ss_pred HHHHhhcCCEEEEEeCCCCchHHHHHHHH
Confidence 33457899999999777 99999998653
No 369
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=36.28 E-value=14 Score=32.24 Aligned_cols=22 Identities=18% Similarity=0.611 Sum_probs=13.4
Q ss_pred ceeecCCCCccccee-eeeeccC
Q 014387 403 ERIICSECGRVMEKF-LMYRCCD 424 (425)
Q Consensus 403 ~~i~C~~C~r~Me~~-~~y~cc~ 424 (425)
-.|.||+|+|+-... =...|-|
T Consensus 68 v~V~CP~C~K~TKmLGr~D~CM~ 90 (114)
T PF11023_consen 68 VQVECPNCGKQTKMLGRVDACMH 90 (114)
T ss_pred eeeECCCCCChHhhhchhhccCc
Confidence 356788888876554 3345543
No 370
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=35.68 E-value=18 Score=25.47 Aligned_cols=12 Identities=33% Similarity=0.891 Sum_probs=10.8
Q ss_pred ecCCCCccccee
Q 014387 406 ICSECGRVMEKF 417 (425)
Q Consensus 406 ~C~~C~r~Me~~ 417 (425)
.||.|+..|+..
T Consensus 1 ~CP~C~~~l~~~ 12 (41)
T PF13453_consen 1 KCPRCGTELEPV 12 (41)
T ss_pred CcCCCCcccceE
Confidence 599999999986
No 371
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=34.86 E-value=31 Score=24.83 Aligned_cols=12 Identities=25% Similarity=0.636 Sum_probs=10.1
Q ss_pred eeecCCCCcccc
Q 014387 404 RIICSECGRVME 415 (425)
Q Consensus 404 ~i~C~~C~r~Me 415 (425)
.+.||.||.++.
T Consensus 21 ~~~Cp~CG~~~~ 32 (46)
T PRK00398 21 GVRCPYCGYRIL 32 (46)
T ss_pred ceECCCCCCeEE
Confidence 689999998765
No 372
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=34.73 E-value=1.4e+02 Score=25.69 Aligned_cols=34 Identities=21% Similarity=0.145 Sum_probs=21.7
Q ss_pred CCEEEEEEecCCChHhHHHHHHHHHHHHHhhhccCCCceEEEEE
Q 014387 63 RKMVLLLISDLDISQEEVIILEQLYSEARQHQTRHESQYEVVWL 106 (425)
Q Consensus 63 GK~VlL~FsAsWC~pCr~~~L~~iY~~~k~~~~k~~~~fEIV~I 106 (425)
.+.|++ ||.+|||.|.. ++.+...+. -.+.|+=+
T Consensus 13 ~~~VVi-fSKs~C~~c~~--~k~ll~~~~-------v~~~vvEL 46 (104)
T KOG1752|consen 13 ENPVVI-FSKSSCPYCHR--AKELLSDLG-------VNPKVVEL 46 (104)
T ss_pred cCCEEE-EECCcCchHHH--HHHHHHhCC-------CCCEEEEc
Confidence 344444 99999999998 455555442 24556655
No 373
>PRK07218 replication factor A; Provisional
Probab=34.38 E-value=16 Score=38.87 Aligned_cols=11 Identities=64% Similarity=1.413 Sum_probs=7.9
Q ss_pred ecCCCCcccce
Q 014387 406 ICSECGRVMEK 416 (425)
Q Consensus 406 ~C~~C~r~Me~ 416 (425)
.||+|+|.|.+
T Consensus 299 rCP~C~r~v~~ 309 (423)
T PRK07218 299 RCPECGRVIQK 309 (423)
T ss_pred cCcCccccccC
Confidence 57777777765
No 374
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=33.57 E-value=90 Score=23.51 Aligned_cols=32 Identities=19% Similarity=0.264 Sum_probs=24.9
Q ss_pred EEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccC
Q 014387 228 LYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKS 263 (425)
Q Consensus 228 lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d 263 (425)
||+...|+.|+ +++-++...|+++|.+.+..+
T Consensus 3 Ly~~~~~p~~~----rvr~~L~~~gl~~~~~~~~~~ 34 (71)
T cd03037 3 LYIYEHCPFCV----KARMIAGLKNIPVEQIILQND 34 (71)
T ss_pred eEecCCCcHhH----HHHHHHHHcCCCeEEEECCCC
Confidence 78888899886 455556777999999988754
No 375
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=33.44 E-value=19 Score=26.16 Aligned_cols=11 Identities=45% Similarity=1.041 Sum_probs=9.3
Q ss_pred eecCCCCcccc
Q 014387 405 IICSECGRVME 415 (425)
Q Consensus 405 i~C~~C~r~Me 415 (425)
-.||-|||||.
T Consensus 9 K~C~~C~rpf~ 19 (42)
T PF10013_consen 9 KICPVCGRPFT 19 (42)
T ss_pred CcCcccCCcch
Confidence 46999999984
No 376
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=33.06 E-value=24 Score=24.35 Aligned_cols=20 Identities=40% Similarity=0.896 Sum_probs=13.4
Q ss_pred eecCCCCCCCCce---eecCCCCcc
Q 014387 392 LVLPGTAGKIPER---IICSECGRV 413 (425)
Q Consensus 392 ~~~~~~~g~i~~~---i~C~~C~r~ 413 (425)
+.+| ...||+. +.|+.||..
T Consensus 12 y~i~--d~~ip~~g~~v~C~~C~~~ 34 (36)
T PF13717_consen 12 YEID--DEKIPPKGRKVRCSKCGHV 34 (36)
T ss_pred EeCC--HHHCCCCCcEEECCCCCCE
Confidence 5555 3445554 999999864
No 377
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=32.95 E-value=34 Score=29.70 Aligned_cols=44 Identities=16% Similarity=0.353 Sum_probs=23.2
Q ss_pred HHHHhhccCCCCCCccc--eecCCCCCCCCceeecCCCCccccee-eeeec
Q 014387 375 AMRDHLGQLHTPHHCNR--LVLPGTAGKIPERIICSECGRVMEKF-LMYRC 422 (425)
Q Consensus 375 a~~~~~~~~~~~~~c~~--~~~~~~~g~i~~~i~C~~C~r~Me~~-~~y~c 422 (425)
|++-+|+.+...-.|.. +++- .+|.+..|++||+..+.- ..+.|
T Consensus 43 ~L~faf~~~~~~t~~ega~L~I~----~~p~~~~C~~Cg~~~~~~~~~~~C 89 (115)
T TIGR00100 43 QLQFAFEVVREGTVAEGAKLNIE----DEPVECECEDCSEEVSPEIDLYRC 89 (115)
T ss_pred HHHHHHHHHhCCCccCCCEEEEE----eeCcEEEcccCCCEEecCCcCccC
Confidence 44555554333333433 4332 467777777777666654 34445
No 378
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=32.86 E-value=94 Score=26.30 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=33.1
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCC-ChhHHhhhhh
Q 014387 226 ICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSN-PKDRVRRNND 274 (425)
Q Consensus 226 I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~-~~e~f~~~~~ 274 (425)
|-||+-..|..||+ +.+.+++.|++++.+-+-++. +.++.++.++
T Consensus 1 i~iy~~~~C~~crk----a~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~ 46 (105)
T cd03035 1 ITLYGIKNCDTVKK----ARKWLEARGVAYTFHDYRKDGLDAATLERWLA 46 (105)
T ss_pred CEEEeCCCCHHHHH----HHHHHHHcCCCeEEEecccCCCCHHHHHHHHH
Confidence 45899999999975 556667789999999777665 5555665554
No 379
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=32.83 E-value=87 Score=23.97 Aligned_cols=32 Identities=28% Similarity=0.342 Sum_probs=24.8
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEec
Q 014387 226 ICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVG 261 (425)
Q Consensus 226 I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs 261 (425)
|-||+...|+.|| +++.++.+.++++|.+.+.
T Consensus 2 i~Ly~~~~~p~c~----kv~~~L~~~gi~y~~~~~~ 33 (77)
T cd03040 2 ITLYQYKTCPFCC----KVRAFLDYHGIPYEVVEVN 33 (77)
T ss_pred EEEEEcCCCHHHH----HHHHHHHHCCCceEEEECC
Confidence 5689988899875 4555567779999999874
No 380
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=32.79 E-value=18 Score=26.96 Aligned_cols=10 Identities=40% Similarity=1.149 Sum_probs=5.1
Q ss_pred ecCCCCcccc
Q 014387 406 ICSECGRVME 415 (425)
Q Consensus 406 ~C~~C~r~Me 415 (425)
.||-|+|++.
T Consensus 22 ~CPlC~r~l~ 31 (54)
T PF04423_consen 22 CCPLCGRPLD 31 (54)
T ss_dssp E-TTT--EE-
T ss_pred cCCCCCCCCC
Confidence 6888999984
No 381
>smart00714 LITAF Possible membrane-associated motif in LPS-induced tumor necrosis factor alpha factor (LITAF), also known as PIG7, and other animal proteins.
Probab=32.73 E-value=34 Score=26.51 Aligned_cols=20 Identities=15% Similarity=0.464 Sum_probs=17.6
Q ss_pred CceeecCCCCcccceeeeee
Q 014387 402 PERIICSECGRVMEKFLMYR 421 (425)
Q Consensus 402 ~~~i~C~~C~r~Me~~~~y~ 421 (425)
|..+.||.|+..+..-|.|+
T Consensus 1 p~~i~Cp~C~~~~~T~v~~~ 20 (67)
T smart00714 1 PYQLFCPRCQNNVTTRVETE 20 (67)
T ss_pred CcceECCCCCCEEEEEEEEE
Confidence 67899999999999888875
No 382
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=32.54 E-value=1.1e+02 Score=28.69 Aligned_cols=43 Identities=7% Similarity=-0.007 Sum_probs=33.9
Q ss_pred ccCCeEEEEEeCCC-cchHHHHHHHHHHHHHH-cCCCeeEEEeccC
Q 014387 220 MAEGRYICLYGGED-MDWIRKFTTATNAVAKT-AGIPLGMVYVGKS 263 (425)
Q Consensus 220 ~~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~-~~~~~Eiv~Vs~d 263 (425)
...||.+.|.+-|. |+.|++ .+.|.++.++ .+..|+++-|+.+
T Consensus 22 ~~~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 22 KYAGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred HhCCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence 35789999999877 999987 5578888544 4567999999875
No 383
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=32.47 E-value=1.1e+02 Score=26.67 Aligned_cols=49 Identities=16% Similarity=0.353 Sum_probs=36.0
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEE-EeccCCChhHHhhhhhhhh
Q 014387 225 YICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMV-YVGKSNPKDRVRRNNDTIA 277 (425)
Q Consensus 225 ~I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv-~Vs~d~~~e~f~~~~~~i~ 277 (425)
.|-||+.-+|.-|| ++.+.+++.|+.++.+ |...--+++..++.++...
T Consensus 2 ~itiy~~p~C~t~r----ka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~g 51 (117)
T COG1393 2 MITIYGNPNCSTCR----KALAWLEEHGIEYTFIDYLKTPPSREELKKILSKLG 51 (117)
T ss_pred eEEEEeCCCChHHH----HHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHHcC
Confidence 57899999999885 3555667889999877 6655556777777665544
No 384
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=31.67 E-value=48 Score=26.07 Aligned_cols=16 Identities=0% Similarity=-0.095 Sum_probs=13.5
Q ss_pred EEEEecCCChHhHHHH
Q 014387 67 LLLISDLDISQEEVII 82 (425)
Q Consensus 67 lL~FsAsWC~pCr~~~ 82 (425)
+..|+.+|||.|+.--
T Consensus 10 V~ly~~~~Cp~C~~ak 25 (79)
T TIGR02190 10 VVVFTKPGCPFCAKAK 25 (79)
T ss_pred EEEEECCCCHhHHHHH
Confidence 4469999999999876
No 385
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=31.46 E-value=18 Score=35.67 Aligned_cols=29 Identities=31% Similarity=0.726 Sum_probs=18.6
Q ss_pred CCCc--cceecCCC-CC---CCCceeecCCCCccc
Q 014387 386 PHHC--NRLVLPGT-AG---KIPERIICSECGRVM 414 (425)
Q Consensus 386 ~~~c--~~~~~~~~-~g---~i~~~i~C~~C~r~M 414 (425)
.+.| ||..||.. .. .=-+.|.||.|||..
T Consensus 197 g~~C~GC~m~l~~~~~~~V~~~d~iv~CP~CgRIL 231 (239)
T COG1579 197 GRVCGGCHMKLPSQTLSKVRKKDEIVFCPYCGRIL 231 (239)
T ss_pred CCcccCCeeeecHHHHHHHhcCCCCccCCccchHH
Confidence 3556 56888722 11 234678999999964
No 386
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.14 E-value=5.6e+02 Score=25.81 Aligned_cols=131 Identities=9% Similarity=-0.010 Sum_probs=82.5
Q ss_pred eEEEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCCChhHHhhhhhhhhcccccccc------CCCcchhhhhHh
Q 014387 224 RYICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSNPKDRVRRNNDTIASENLSHIW------QDLTSIWYFWVR 297 (425)
Q Consensus 224 k~I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~~e~f~~~~~~i~~e~ls~~~------~~~~~~~~FW~~ 297 (425)
+...+.-|+|.. -+.+...-.+.+++.|+.+|.+-++.+-+++++.+.+..++.+.--|.. +..-.-..-.-.
T Consensus 28 ~Laii~vg~d~a-s~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~v~~~ 106 (279)
T PRK14178 28 RLATVIVGDDPA-SQMYVRMKHRACERVGIGSVGIELPGDATTRTVLERIRRLNEDPDINGILVQLPLPKGVDTERVIAA 106 (279)
T ss_pred eEEEEEeCCChh-HHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhc
Confidence 444556677633 3344444455567789999999999999999999999998877643322 211110011111
Q ss_pred hh---------hhhhhhhhcCCCCCCchHHHHHHHHhcccCCCCceEEEeccCceeeeccchhHHHHHHHhhh
Q 014387 298 LE---------SMWYSKVQLGRNAETDHVMQEIMRMLTYDSSEGGWAVFARGSAEMASAKGAIFLTCMQEYNT 361 (425)
Q Consensus 298 le---------s~~~sk~~~~~~~~~d~i~~ei~~ll~~~~~~~GWavls~G~~~~~~~~g~~~~~~~~~f~~ 361 (425)
|. ..-.-|+..|+..---.+-+-|.+||.+=+- =-+|.+++|.|+|..+.+.|+.+-.
T Consensus 107 I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~av~~ll~~~~i------~l~Gk~V~ViGrs~~vGrpla~lL~ 173 (279)
T PRK14178 107 ILPEKDVDGFHPLNLGRLVSGLPGFAPCTPNGIMTLLHEYKI------SIAGKRAVVVGRSIDVGRPMAALLL 173 (279)
T ss_pred cCcccCcccCChhhHHHHhCCCCCCCCCCHHHHHHHHHHcCC------CCCCCEEEEECCCccccHHHHHHHH
Confidence 11 1112344445444444577888899854422 3588999999999988888877776
No 387
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=30.82 E-value=59 Score=38.97 Aligned_cols=70 Identities=24% Similarity=0.470 Sum_probs=46.8
Q ss_pred HHHhcccCCCCceEEEeccCceeeeccchhHHHHHHHhhhhhhccCCCCCcHHHHHHhhccCCC--CC-CccceecCC--
Q 014387 322 MRMLTYDSSEGGWAVFARGSAEMASAKGAIFLTCMQEYNTVWKDQVEPKGFMPAMRDHLGQLHT--PH-HCNRLVLPG-- 396 (425)
Q Consensus 322 ~~ll~~~~~~~GWavls~G~~~~~~~~g~~~~~~~~~f~~~Wk~~v~~~gf~~a~~~~~~~~~~--~~-~c~~~~~~~-- 396 (425)
..+|.=+..++|.-|=||||- |+.+..||.+-.+ -+++.+ .+ .|-++++-.
T Consensus 874 Sq~LVkkS~~dGYlVGSRGSV------GSSlVAtm~gITE------------------VNPL~PHY~Cp~Cky~Ef~~d~ 929 (1444)
T COG2176 874 SQKLVKKSLDDGYLVGSRGSV------GSSLVATMIGITE------------------VNPLPPHYLCPECKYSEFIDDG 929 (1444)
T ss_pred HHHHHHhhccCCeEecCCCcc------hHHHHHHhhcccc------------------cCCCCccccCCCCceeeeecCC
Confidence 334434444679999999994 9999999988887 233222 22 377777743
Q ss_pred C--CC-CCCceeecCCCCcccce
Q 014387 397 T--AG-KIPERIICSECGRVMEK 416 (425)
Q Consensus 397 ~--~g-~i~~~i~C~~C~r~Me~ 416 (425)
. +| +.|. -.||.||-+|-+
T Consensus 930 svgsGfDLpd-K~CPkCg~pl~k 951 (1444)
T COG2176 930 SVGSGFDLPD-KDCPKCGTPLKK 951 (1444)
T ss_pred CcCCCCCCCC-CCCCcCCCcccc
Confidence 3 44 4555 479999998754
No 388
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=30.63 E-value=57 Score=24.88 Aligned_cols=15 Identities=7% Similarity=-0.186 Sum_probs=12.7
Q ss_pred EEEecCCChHhHHHH
Q 014387 68 LLISDLDISQEEVII 82 (425)
Q Consensus 68 L~FsAsWC~pCr~~~ 82 (425)
..|+.+|||.|..--
T Consensus 4 ~lys~~~Cp~C~~ak 18 (72)
T cd03029 4 SLFTKPGCPFCARAK 18 (72)
T ss_pred EEEECCCCHHHHHHH
Confidence 458999999999875
No 389
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=30.59 E-value=23 Score=41.64 Aligned_cols=22 Identities=32% Similarity=0.714 Sum_probs=19.4
Q ss_pred eeecCCCCcccceeeeeeccCC
Q 014387 404 RIICSECGRVMEKFLMYRCCDE 425 (425)
Q Consensus 404 ~i~C~~C~r~Me~~~~y~cc~~ 425 (425)
..+||.|+||.|-.-.|-||.+
T Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~ 817 (1006)
T PRK12775 796 VATCPKCHRPLEGDEEYVCCAT 817 (1006)
T ss_pred CccCcccCCCCCCCceeEEecC
Confidence 3589999999999999999964
No 390
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=30.57 E-value=1.4e+02 Score=24.80 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=20.2
Q ss_pred CcchHHHHHHHHHHHHHHcCCCeeEEEeccC
Q 014387 233 DMDWIRKFTTATNAVAKTAGIPLGMVYVGKS 263 (425)
Q Consensus 233 d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d 263 (425)
.||+| ..++++++..+++++.+-|..+
T Consensus 26 ~Cp~C----~~ak~lL~~~~i~~~~~di~~~ 52 (97)
T TIGR00365 26 QCGFS----ARAVQILKACGVPFAYVNVLED 52 (97)
T ss_pred CCchH----HHHHHHHHHcCCCEEEEECCCC
Confidence 38877 4566666777999999888654
No 391
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=30.37 E-value=99 Score=33.68 Aligned_cols=30 Identities=7% Similarity=0.113 Sum_probs=21.1
Q ss_pred cccCCCEEEEEEecCCChHhHHHH--HHHHHH
Q 014387 59 EVLRRKMVLLLISDLDISQEEVII--LEQLYS 88 (425)
Q Consensus 59 s~LkGK~VlL~FsAsWC~pCr~~~--L~~iY~ 88 (425)
..+.+++-+-.|-.++||.|..-. ++++-.
T Consensus 472 ~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~ 503 (555)
T TIGR03143 472 KKITKPVNIKIGVSLSCTLCPDVVLAAQRIAS 503 (555)
T ss_pred HhcCCCeEEEEEECCCCCCcHHHHHHHHHHHH
Confidence 455677777778899999999744 444443
No 392
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=30.36 E-value=97 Score=23.84 Aligned_cols=41 Identities=22% Similarity=0.329 Sum_probs=30.3
Q ss_pred EEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCCChhHHhhh
Q 014387 228 LYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSNPKDRVRRN 272 (425)
Q Consensus 228 lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~~e~f~~~ 272 (425)
||+...|++|++ +.-+++..++++|.+-|.....++.|.+.
T Consensus 1 Ly~~~~Sp~~~k----v~~~l~~~~i~~~~~~v~~~~~~~~~~~~ 41 (75)
T PF13417_consen 1 LYGFPGSPYSQK----VRLALEEKGIPYELVPVDPEEKRPEFLKL 41 (75)
T ss_dssp EEEETTSHHHHH----HHHHHHHHTEEEEEEEEBTTSTSHHHHHH
T ss_pred CCCcCCChHHHH----HHHHHHHcCCeEEEeccCcccchhHHHhh
Confidence 788888997754 44455677999999999877666666553
No 393
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=30.33 E-value=23 Score=23.25 Aligned_cols=17 Identities=29% Similarity=0.776 Sum_probs=9.7
Q ss_pred ecCCCCccccee---eeeec
Q 014387 406 ICSECGRVMEKF---LMYRC 422 (425)
Q Consensus 406 ~C~~C~r~Me~~---~~y~c 422 (425)
.||.||-...+. +.++|
T Consensus 1 ~CP~C~s~l~~~~~ev~~~C 20 (28)
T PF03119_consen 1 TCPVCGSKLVREEGEVDIRC 20 (28)
T ss_dssp B-TTT--BEEE-CCTTCEEE
T ss_pred CcCCCCCEeEcCCCCEeEEC
Confidence 499999888754 66666
No 394
>TIGR01031 rpmF_bact ribosomal protein L32. This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus.
Probab=30.31 E-value=30 Score=26.36 Aligned_cols=17 Identities=24% Similarity=0.733 Sum_probs=12.0
Q ss_pred CCCceeecCCCCcccce
Q 014387 400 KIPERIICSECGRVMEK 416 (425)
Q Consensus 400 ~i~~~i~C~~C~r~Me~ 416 (425)
..|..+.||+||.++--
T Consensus 22 ~~p~l~~C~~cG~~~~~ 38 (55)
T TIGR01031 22 TAPTLVVCPNCGEFKLP 38 (55)
T ss_pred cCCcceECCCCCCcccC
Confidence 35777888888876543
No 395
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=29.91 E-value=1.4e+02 Score=31.48 Aligned_cols=16 Identities=0% Similarity=0.000 Sum_probs=12.7
Q ss_pred EEEEecCCChHhHHHH
Q 014387 67 LLLISDLDISQEEVII 82 (425)
Q Consensus 67 lL~FsAsWC~pCr~~~ 82 (425)
+.-|+.+|||+|..--
T Consensus 4 V~vys~~~Cp~C~~aK 19 (410)
T PRK12759 4 VRIYTKTNCPFCDLAK 19 (410)
T ss_pred EEEEeCCCCHHHHHHH
Confidence 3458999999998753
No 396
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=29.89 E-value=1.2e+02 Score=26.80 Aligned_cols=46 Identities=17% Similarity=0.109 Sum_probs=32.5
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccC-CChhHHhhhhh
Q 014387 225 YICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKS-NPKDRVRRNND 274 (425)
Q Consensus 225 ~I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d-~~~e~f~~~~~ 274 (425)
+|-|||-.+|.-||+ +.+.+.+.|+.+|.+=+-++ -+.++.++.++
T Consensus 2 ~i~iY~~p~Cst~RK----A~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l~ 48 (126)
T TIGR01616 2 TIIFYEKPGCANNAR----QKAALKASGHDVEVQDILKEPWHADTLRPYFG 48 (126)
T ss_pred eEEEEeCCCCHHHHH----HHHHHHHCCCCcEEEeccCCCcCHHHHHHHHH
Confidence 577999999998864 55666778999999855444 35555555443
No 397
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=29.38 E-value=1.2e+02 Score=22.92 Aligned_cols=40 Identities=15% Similarity=0.193 Sum_probs=26.5
Q ss_pred EEeCCCcchHHHHHHHHHHHHHH--cCCCeeEEEeccCCChhHHhh
Q 014387 228 LYGGEDMDWIRKFTTATNAVAKT--AGIPLGMVYVGKSNPKDRVRR 271 (425)
Q Consensus 228 lY~g~d~~w~r~FT~~l~~~~k~--~~~~~Eiv~Vs~d~~~e~f~~ 271 (425)
||+...|++|+ ++.-++.. .++++|.+-+...+..+.|.+
T Consensus 3 Ly~~~~s~~~~----~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~ 44 (73)
T cd03049 3 LLYSPTSPYVR----KVRVAAHETGLGDDVELVLVNPWSDDESLLA 44 (73)
T ss_pred EecCCCCcHHH----HHHHHHHHhCCCCCcEEEEcCcccCChHHHH
Confidence 78878788775 33334455 689999999875444445544
No 398
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=29.23 E-value=76 Score=31.08 Aligned_cols=40 Identities=13% Similarity=0.195 Sum_probs=26.5
Q ss_pred cCCeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEe
Q 014387 221 AEGRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYV 260 (425)
Q Consensus 221 ~egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~V 260 (425)
.++|.+..-|++- |+.||+|-..+.+..+..++.+..+.+
T Consensus 115 ~~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~g~V~v~~ip~ 155 (251)
T PRK11657 115 ADAPRIVYVFADPNCPYCKQFWQQARPWVDSGKVQLRHILV 155 (251)
T ss_pred CCCCeEEEEEECCCChhHHHHHHHHHHHhhcCceEEEEEec
Confidence 3566655556665 999999999988875443345554544
No 399
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=29.19 E-value=1.4e+02 Score=26.17 Aligned_cols=42 Identities=17% Similarity=0.059 Sum_probs=24.3
Q ss_pred cCCeEEEEEe--CC-----C-cchHHHHHHHHHHHHHHcCCCeeE--EEecc
Q 014387 221 AEGRYICLYG--GE-----D-MDWIRKFTTATNAVAKTAGIPLGM--VYVGK 262 (425)
Q Consensus 221 ~egk~I~lY~--g~-----d-~~w~r~FT~~l~~~~k~~~~~~Ei--v~Vs~ 262 (425)
..++.++||| |. . ||.|++=.|.+.++.+++..+.-+ ++||.
T Consensus 17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~ 68 (119)
T PF06110_consen 17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGD 68 (119)
T ss_dssp TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---
T ss_pred cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCC
Confidence 4556666666 32 2 888888888888876555444444 46664
No 400
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=29.10 E-value=1.8e+02 Score=24.99 Aligned_cols=58 Identities=9% Similarity=0.180 Sum_probs=41.5
Q ss_pred CeEEEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCCChhHHhhhhhhhhcccc
Q 014387 223 GRYICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSNPKDRVRRNNDTIASENL 281 (425)
Q Consensus 223 gk~I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~~e~f~~~~~~i~~e~l 281 (425)
-+...++-|+| +--+.+.....+.++..|+.++.+-++.+-+++++.+.+..++.+.-
T Consensus 30 P~Laii~vg~d-~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D~~ 87 (117)
T PF00763_consen 30 PKLAIILVGDD-PASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNEDPS 87 (117)
T ss_dssp -EEEEEEES---HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-TT
T ss_pred cEEEEEecCCC-hhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCCCC
Confidence 34556666777 44456666667777888999999999999999999999999987764
No 401
>PF14149 YhfH: YhfH-like protein
Probab=28.86 E-value=12 Score=26.50 Aligned_cols=13 Identities=38% Similarity=0.922 Sum_probs=10.4
Q ss_pred eecCCCCccccee
Q 014387 405 IICSECGRVMEKF 417 (425)
Q Consensus 405 i~C~~C~r~Me~~ 417 (425)
-.|++||..||--
T Consensus 14 K~C~~CG~~i~EQ 26 (37)
T PF14149_consen 14 KKCTECGKEIEEQ 26 (37)
T ss_pred cccHHHHHHHHHH
Confidence 3699999999753
No 402
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.77 E-value=1.9e+02 Score=28.52 Aligned_cols=75 Identities=8% Similarity=0.165 Sum_probs=48.0
Q ss_pred CcccCCCCCeEecccc-CCC---EEEEEEec----CCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEeccCCCCCC
Q 014387 46 PLVDGATKTRVNLEVL-RRK---MVLLLISD----LDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPIVDPNMPW 115 (425)
Q Consensus 46 pl~dg~~g~~V~ls~L-kGK---~VlL~FsA----sWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w 115 (425)
-.|++.+| +++|.+| .|| +|.=++.+ .-||.|-..+ +.-.-..+.. .++-+|.||
T Consensus 55 Y~Fe~~~G-~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~------~dv~lv~Vs-------- 119 (247)
T COG4312 55 YVFETENG-KKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEH------HDVTLVAVS-------- 119 (247)
T ss_pred eEeecCCc-chhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhh------cCceEEEEe--------
Confidence 36888888 6788775 666 34444444 4599998777 6666677753 368888887
Q ss_pred chHHHHHHHHHHh----CCCceeec
Q 014387 116 TDNKQKQFQSLQS----AMPWYTVY 136 (425)
Q Consensus 116 ~D~~~~~F~~~~~----~mPW~aV~ 136 (425)
-.-.+.+..|+. +|||++..
T Consensus 120 -RAPl~~l~~~k~rmGW~f~w~Ss~ 143 (247)
T COG4312 120 -RAPLEELVAYKRRMGWQFPWVSST 143 (247)
T ss_pred -cCcHHHHHHHHHhcCCcceeEecc
Confidence 233455555554 56676653
No 403
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=28.67 E-value=24 Score=22.06 Aligned_cols=10 Identities=40% Similarity=1.165 Sum_probs=4.8
Q ss_pred cCCCCcccce
Q 014387 407 CSECGRVMEK 416 (425)
Q Consensus 407 C~~C~r~Me~ 416 (425)
||+||+..+.
T Consensus 2 Cp~CG~~~~~ 11 (23)
T PF13240_consen 2 CPNCGAEIED 11 (23)
T ss_pred CcccCCCCCC
Confidence 4555554443
No 404
>PTZ00062 glutaredoxin; Provisional
Probab=28.54 E-value=1e+02 Score=29.51 Aligned_cols=39 Identities=15% Similarity=0.115 Sum_probs=29.2
Q ss_pred eEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEeccC
Q 014387 224 RYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGKS 263 (425)
Q Consensus 224 k~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d 263 (425)
..+-+||.+. |++|+...+.+.+++++. .++..+.|..|
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~-~~~~F~~V~~d 57 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDF-PSLEFYVVNLA 57 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHC-CCcEEEEEccc
Confidence 4457788888 999999999999997663 44555666544
No 405
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=28.45 E-value=66 Score=23.20 Aligned_cols=33 Identities=27% Similarity=0.735 Sum_probs=19.6
Q ss_pred CccceecCCCCCCCCceeecCCCCccccee--eeee
Q 014387 388 HCNRLVLPGTAGKIPERIICSECGRVMEKF--LMYR 421 (425)
Q Consensus 388 ~c~~~~~~~~~g~i~~~i~C~~C~r~Me~~--~~y~ 421 (425)
.|..+..+.. +.--.+.+||.||..+-.. +.|+
T Consensus 5 ~Cg~~l~~~~-~~~~~~~vC~~Cg~~~~~~~~~~~~ 39 (52)
T smart00661 5 KCGNMLIPKE-GKEKRRFVCRKCGYEEPIEQKYVYK 39 (52)
T ss_pred CCCCcccccc-CCCCCEEECCcCCCeEECCCcEEEE
Confidence 3666554432 1112489999999887654 3454
No 406
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=28.40 E-value=35 Score=23.49 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=13.1
Q ss_pred eecCCCCCCCCceeecCCCCcc
Q 014387 392 LVLPGTAGKIPERIICSECGRV 413 (425)
Q Consensus 392 ~~~~~~~g~i~~~i~C~~C~r~ 413 (425)
+++---+|+=.++.+||.||.+
T Consensus 10 l~~~ip~gd~r~R~vC~~Cg~I 31 (34)
T PF14803_consen 10 LERRIPEGDDRERLVCPACGFI 31 (34)
T ss_dssp -EEE--TT-SS-EEEETTTTEE
T ss_pred hhhhcCCCCCccceECCCCCCE
Confidence 4443337888899999999964
No 407
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=28.37 E-value=1.1e+02 Score=28.50 Aligned_cols=46 Identities=7% Similarity=-0.021 Sum_probs=32.6
Q ss_pred cCCeEEEEEeC--CCcchHHHHHHHHHHHHHH-cCCCeeEEEeccCCCh
Q 014387 221 AEGRYICLYGG--EDMDWIRKFTTATNAVAKT-AGIPLGMVYVGKSNPK 266 (425)
Q Consensus 221 ~egk~I~lY~g--~d~~w~r~FT~~l~~~~k~-~~~~~Eiv~Vs~d~~~ 266 (425)
..||.+.|||. +.|++|..=...+.+.+++ .+..++++.||.|...
T Consensus 34 ~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~ 82 (199)
T PTZ00253 34 YKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEY 82 (199)
T ss_pred HCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHH
Confidence 46888777775 4499997655666666433 4568999999998654
No 408
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=27.95 E-value=27 Score=22.36 Aligned_cols=9 Identities=33% Similarity=0.981 Sum_probs=7.0
Q ss_pred ceeecCCCC
Q 014387 403 ERIICSECG 411 (425)
Q Consensus 403 ~~i~C~~C~ 411 (425)
..-.||+||
T Consensus 15 v~f~CPnCG 23 (24)
T PF07754_consen 15 VPFPCPNCG 23 (24)
T ss_pred ceEeCCCCC
Confidence 356899998
No 409
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=27.69 E-value=1.4e+02 Score=28.48 Aligned_cols=51 Identities=12% Similarity=0.087 Sum_probs=34.6
Q ss_pred ccccCCeEEEEEeC-CCcc-hHHHHHHHHHHH---HH-HcCCCeeEEEeccCCChhH
Q 014387 218 NWMAEGRYICLYGG-EDMD-WIRKFTTATNAV---AK-TAGIPLGMVYVGKSNPKDR 268 (425)
Q Consensus 218 ~~~~egk~I~lY~g-~d~~-w~r~FT~~l~~~---~k-~~~~~~Eiv~Vs~d~~~e~ 268 (425)
..-++||..-+||| .||| -|-.=+..|..+ +. ..++.+.+++||-|-.++.
T Consensus 62 ~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDt 118 (207)
T COG1999 62 LKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDT 118 (207)
T ss_pred ccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCC
Confidence 34579999999998 6643 232333334444 33 5689999999999976655
No 410
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=27.23 E-value=30 Score=23.61 Aligned_cols=13 Identities=31% Similarity=0.884 Sum_probs=10.4
Q ss_pred eeecCCCCcccce
Q 014387 404 RIICSECGRVMEK 416 (425)
Q Consensus 404 ~i~C~~C~r~Me~ 416 (425)
.+.||.||.+-+.
T Consensus 25 ~v~C~~C~~~~~~ 37 (38)
T TIGR02098 25 KVRCGKCGHVWYA 37 (38)
T ss_pred EEECCCCCCEEEe
Confidence 6999999987543
No 411
>PRK15000 peroxidase; Provisional
Probab=26.49 E-value=1.2e+02 Score=28.47 Aligned_cols=44 Identities=11% Similarity=-0.089 Sum_probs=31.2
Q ss_pred CCeEEEEEe--CCCcchHHHHHHHHHHHHHH-cCCCeeEEEeccCCC
Q 014387 222 EGRYICLYG--GEDMDWIRKFTTATNAVAKT-AGIPLGMVYVGKSNP 265 (425)
Q Consensus 222 egk~I~lY~--g~d~~w~r~FT~~l~~~~k~-~~~~~Eiv~Vs~d~~ 265 (425)
.||++.|+| ++.|+.|+.=.+.+.+.+.+ .+..++++-||.|..
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~ 79 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSE 79 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCH
Confidence 577766666 45599998766666665433 356799999999854
No 412
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=26.39 E-value=19 Score=27.75 Aligned_cols=14 Identities=29% Similarity=0.684 Sum_probs=8.1
Q ss_pred ceeecCCCCcccce
Q 014387 403 ERIICSECGRVMEK 416 (425)
Q Consensus 403 ~~i~C~~C~r~Me~ 416 (425)
.++.||.||++-+-
T Consensus 1 m~v~CP~C~k~~~~ 14 (57)
T PF03884_consen 1 MTVKCPICGKPVEW 14 (57)
T ss_dssp -EEE-TTT--EEE-
T ss_pred CcccCCCCCCeecc
Confidence 37899999998876
No 413
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=25.58 E-value=1.4e+02 Score=25.39 Aligned_cols=46 Identities=13% Similarity=0.278 Sum_probs=31.8
Q ss_pred EEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCC-ChhHHhhhhhhh
Q 014387 227 CLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSN-PKDRVRRNNDTI 276 (425)
Q Consensus 227 ~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~-~~e~f~~~~~~i 276 (425)
-||+...|+.||+ +.+.+++.|+.++.+-+..+. ..+++.+.++..
T Consensus 2 ~iY~~~~C~~c~k----a~~~L~~~~i~~~~idi~~~~~~~~el~~l~~~~ 48 (117)
T TIGR01617 2 KVYGSPNCTTCKK----ARRWLEANGIEYQFIDIGEDGPTREELLDILSLL 48 (117)
T ss_pred EEEeCCCCHHHHH----HHHHHHHcCCceEEEecCCChhhHHHHHHHHHHc
Confidence 4899999998854 555567779999998887654 344455544433
No 414
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=25.56 E-value=1.4e+02 Score=25.41 Aligned_cols=45 Identities=22% Similarity=0.188 Sum_probs=32.1
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCC-ChhHHhhhhh
Q 014387 226 ICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSN-PKDRVRRNND 274 (425)
Q Consensus 226 I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~-~~e~f~~~~~ 274 (425)
|-|||..+|.-||+ +.+.+++.+++++.+=+-++. +.+++.+.++
T Consensus 1 i~iy~~~~C~t~rk----A~~~L~~~~i~~~~~di~~~~~t~~el~~~l~ 46 (112)
T cd03034 1 ITIYHNPRCSKSRN----ALALLEEAGIEPEIVEYLKTPPTAAELRELLA 46 (112)
T ss_pred CEEEECCCCHHHHH----HHHHHHHCCCCeEEEecccCCcCHHHHHHHHH
Confidence 34899999998865 445567889999998776665 4555555443
No 415
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=25.44 E-value=35 Score=24.76 Aligned_cols=13 Identities=31% Similarity=0.723 Sum_probs=10.4
Q ss_pred CCceeecCCCCcc
Q 014387 401 IPERIICSECGRV 413 (425)
Q Consensus 401 i~~~i~C~~C~r~ 413 (425)
..+.|.||+||.-
T Consensus 16 ~~~~irC~~CG~r 28 (44)
T smart00659 16 SKDVVRCRECGYR 28 (44)
T ss_pred CCCceECCCCCce
Confidence 3578999999954
No 416
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=25.20 E-value=1.7e+02 Score=28.17 Aligned_cols=45 Identities=20% Similarity=0.322 Sum_probs=33.3
Q ss_pred CeEEEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCCChhHHhh
Q 014387 223 GRYICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSNPKDRVRR 271 (425)
Q Consensus 223 gk~I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~~e~f~~ 271 (425)
+-.+.||--+||+.|-.+...+ .+.+.+|.+++||++.+.+..+.
T Consensus 109 ~~rlalFvkd~C~~C~~~~~~l----~a~~~~~Diylvgs~~dD~~Ir~ 153 (200)
T TIGR03759 109 GGRLALFVKDDCVACDARVQRL----LADNAPLDLYLVGSQGDDERIRQ 153 (200)
T ss_pred CCeEEEEeCCCChHHHHHHHHH----hcCCCceeEEEecCCCCHHHHHH
Confidence 4445554456799997776655 34688999999998888777776
No 417
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.00 E-value=1.5e+02 Score=27.37 Aligned_cols=44 Identities=2% Similarity=-0.106 Sum_probs=33.9
Q ss_pred CCeEEEEEeCCC-cchHHHHHHHHHHHHHHcCCCeeEEEeccCCC
Q 014387 222 EGRYICLYGGED-MDWIRKFTTATNAVAKTAGIPLGMVYVGKSNP 265 (425)
Q Consensus 222 egk~I~lY~g~d-~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~ 265 (425)
.+.-|.+=|.|- |.|||..+|.|.+++.+....|-++-|--|..
T Consensus 60 S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~ 104 (150)
T KOG0910|consen 60 SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEH 104 (150)
T ss_pred cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccc
Confidence 445555557677 99999999999999877677777777777643
No 418
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=24.81 E-value=66 Score=29.65 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHhCCCCCCCeEEEECCCCc
Q 014387 146 IQFIKEEWQFGKKPILVVLDPHGK 169 (425)
Q Consensus 146 ~~~L~~~f~v~~iPtlVvLD~~Gk 169 (425)
...+++.++|++.||+|+.|.++.
T Consensus 136 D~~la~~m~I~~~Ptlvi~~~~~~ 159 (176)
T PF13743_consen 136 DQQLAREMGITGFPTLVIFNENNE 159 (176)
T ss_dssp HHHHHHHTT-SSSSEEEEE-----
T ss_pred HHHHHHHcCCCCCCEEEEEecccc
No 419
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=24.77 E-value=38 Score=24.02 Aligned_cols=14 Identities=36% Similarity=1.021 Sum_probs=10.1
Q ss_pred eeecCCCCccccee
Q 014387 404 RIICSECGRVMEKF 417 (425)
Q Consensus 404 ~i~C~~C~r~Me~~ 417 (425)
.++|++||.++|-.
T Consensus 19 ~~vC~~CG~Vl~e~ 32 (43)
T PF08271_consen 19 ELVCPNCGLVLEEN 32 (43)
T ss_dssp EEEETTT-BBEE-T
T ss_pred eEECCCCCCEeecc
Confidence 45999999998865
No 420
>PF14216 DUF4326: Domain of unknown function (DUF4326)
Probab=24.35 E-value=29 Score=28.79 Aligned_cols=24 Identities=25% Similarity=0.033 Sum_probs=18.1
Q ss_pred eccccCCCEEEEEEecCCChH--hHHHHHHH
Q 014387 57 NLEVLRRKMVLLLISDLDISQ--EEVIILEQ 85 (425)
Q Consensus 57 ~ls~LkGK~VlL~FsAsWC~p--Cr~~~L~~ 85 (425)
.+.+|+||.++- ||+| |-..+|.+
T Consensus 60 ~l~~L~Gk~L~C-----wC~P~~CHgDVL~e 85 (86)
T PF14216_consen 60 ALEELRGKDLGC-----WCPPKPCHGDVLAE 85 (86)
T ss_pred HHHhcCCCceEe-----eCCCCCCchHHHhh
Confidence 445789997766 7999 99887654
No 421
>PRK13190 putative peroxiredoxin; Provisional
Probab=24.03 E-value=1.4e+02 Score=28.01 Aligned_cols=46 Identities=9% Similarity=-0.007 Sum_probs=31.2
Q ss_pred cCCeEEEE--EeCCCcchHHHHHHHHHHHHHH-cCCCeeEEEeccCCCh
Q 014387 221 AEGRYICL--YGGEDMDWIRKFTTATNAVAKT-AGIPLGMVYVGKSNPK 266 (425)
Q Consensus 221 ~egk~I~l--Y~g~d~~w~r~FT~~l~~~~k~-~~~~~Eiv~Vs~d~~~ 266 (425)
..||.+-| |-++.|++|+.=.+.+.+...+ .+..++++-||.|..+
T Consensus 25 ~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~ 73 (202)
T PRK13190 25 YKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIY 73 (202)
T ss_pred hCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHH
Confidence 36776554 3466699998655666655433 3467899999998654
No 422
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=23.86 E-value=1e+02 Score=24.47 Aligned_cols=33 Identities=21% Similarity=0.162 Sum_probs=22.7
Q ss_pred EEEEecCCChHhHHHH--HHHHHHHHHhhhccCCCceEEEEEec
Q 014387 67 LLLISDLDISQEEVII--LEQLYSEARQHQTRHESQYEVVWLPI 108 (425)
Q Consensus 67 lL~FsAsWC~pCr~~~--L~~iY~~~k~~~~k~~~~fEIV~IsI 108 (425)
+.+|+...|+-|...- |.+ +. ...++++..|.|
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~----~~-----~~~~~~l~~vDI 36 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEE----VA-----AEFPFELEEVDI 36 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHH----CC-----TTSTCEEEEEET
T ss_pred EEEEcCCCCChHHHHHHHHHH----HH-----hhcCceEEEEEC
Confidence 5679999999999765 444 21 123688998887
No 423
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=23.63 E-value=4.8e+02 Score=22.50 Aligned_cols=29 Identities=31% Similarity=0.559 Sum_probs=19.8
Q ss_pred hHHHHHHHHhCCCCC-CCeEEEECCCCcEEc
Q 014387 143 RAVIQFIKEEWQFGK-KPILVVLDPHGKVVC 172 (425)
Q Consensus 143 ~~~~~~L~~~f~v~~-iPtlVvLD~~GkVv~ 172 (425)
++.-..|++.|+|+. =|.++|| .+|+++-
T Consensus 63 R~vSn~IAe~~~V~HeSPQ~ili-~~g~~v~ 92 (105)
T PF11009_consen 63 RPVSNAIAEDFGVKHESPQVILI-KNGKVVW 92 (105)
T ss_dssp HHHHHHHHHHHT----SSEEEEE-ETTEEEE
T ss_pred chhHHHHHHHhCCCcCCCcEEEE-ECCEEEE
Confidence 344568889999976 5999988 5788874
No 424
>PRK10853 putative reductase; Provisional
Probab=23.43 E-value=1.5e+02 Score=25.62 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=33.1
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccC-CChhHHhhhhhh
Q 014387 226 ICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKS-NPKDRVRRNNDT 275 (425)
Q Consensus 226 I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d-~~~e~f~~~~~~ 275 (425)
|-|||..+|.-||+ +.+.+++.|+.+|.+=+-++ -+.++.++.++.
T Consensus 2 i~iy~~~~C~t~rk----A~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l~~ 48 (118)
T PRK10853 2 VTLYGIKNCDTIKK----ARRWLEAQGIDYRFHDYRVDGLDSELLQGFIDE 48 (118)
T ss_pred EEEEcCCCCHHHHH----HHHHHHHcCCCcEEeehccCCcCHHHHHHHHHH
Confidence 56999999998864 55556778999998855444 366667666643
No 425
>PRK13189 peroxiredoxin; Provisional
Probab=23.27 E-value=1.5e+02 Score=28.47 Aligned_cols=46 Identities=7% Similarity=-0.039 Sum_probs=31.5
Q ss_pred cCCeEEEE--EeCCCcchHHHHHHHHHHHHHH-cCCCeeEEEeccCCCh
Q 014387 221 AEGRYICL--YGGEDMDWIRKFTTATNAVAKT-AGIPLGMVYVGKSNPK 266 (425)
Q Consensus 221 ~egk~I~l--Y~g~d~~w~r~FT~~l~~~~k~-~~~~~Eiv~Vs~d~~~ 266 (425)
..||++.| |-++.|+.|..=.+.+.+.+.+ .+.+++++-||-|...
T Consensus 33 ~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~ 81 (222)
T PRK13189 33 YKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVF 81 (222)
T ss_pred hCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHH
Confidence 36775444 4466699998766666666433 3567899999998643
No 426
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=23.00 E-value=98 Score=33.84 Aligned_cols=26 Identities=35% Similarity=0.786 Sum_probs=19.7
Q ss_pred CCCCCCceeecCCCCcccce---------eeeeec
Q 014387 397 TAGKIPERIICSECGRVMEK---------FLMYRC 422 (425)
Q Consensus 397 ~~g~i~~~i~C~~C~r~Me~---------~~~y~c 422 (425)
-+.-.|-...||+|||+-.+ .|.|+|
T Consensus 164 ~e~~~P~~piC~kcGri~~t~v~~~d~~~~v~Y~C 198 (521)
T COG1384 164 EEDWSPFMPICEKCGRILTTPVIEWDGEGTVEYRC 198 (521)
T ss_pred cCCceeccccccccCCcceeEEEEecCCceEEEEe
Confidence 36778999999999994332 477887
No 427
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=22.93 E-value=1.6e+02 Score=24.95 Aligned_cols=59 Identities=19% Similarity=0.266 Sum_probs=34.6
Q ss_pred EEEeCCC-cchHHHHHHH------HHHHH--HHcCCCeeEEEeccCCChh--HHhhhhhhhhcccccccc
Q 014387 227 CLYGGED-MDWIRKFTTA------TNAVA--KTAGIPLGMVYVGKSNPKD--RVRRNNDTIASENLSHIW 285 (425)
Q Consensus 227 ~lY~g~d-~~w~r~FT~~------l~~~~--k~~~~~~Eiv~Vs~d~~~e--~f~~~~~~i~~e~ls~~~ 285 (425)
.+||.+- |..|-.--+. |.+++ |=.+.+|++-||.=.++.+ .=++++..|..|.+=|.+
T Consensus 1 ~VYGAe~~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPl 70 (93)
T PF07315_consen 1 VVYGAEVICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPL 70 (93)
T ss_dssp EEEE-SS--GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSE
T ss_pred CcccccccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccce
Confidence 3788777 8888654322 12222 2268999999999887665 466888888888886655
No 428
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=22.85 E-value=1.2e+02 Score=28.46 Aligned_cols=30 Identities=3% Similarity=-0.073 Sum_probs=23.4
Q ss_pred cCCCEEEEEEecCCChHhHHHH--H---HHHHHHH
Q 014387 61 LRRKMVLLLISDLDISQEEVII--L---EQLYSEA 90 (425)
Q Consensus 61 LkGK~VlL~FsAsWC~pCr~~~--L---~~iY~~~ 90 (425)
..||+.++.|+.--||.|..+- | ..+.+.+
T Consensus 35 ~~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~ 69 (207)
T PRK10954 35 VAGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKL 69 (207)
T ss_pred CCCCCeEEEEeCCCCccHHHhcccccchHHHHHhC
Confidence 4678889999999999999986 4 4555554
No 429
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=22.71 E-value=93 Score=30.88 Aligned_cols=29 Identities=14% Similarity=-0.112 Sum_probs=24.0
Q ss_pred CCCEEEEEEecCCChHhHHHH--HHHHHHHH
Q 014387 62 RRKMVLLLISDLDISQEEVII--LEQLYSEA 90 (425)
Q Consensus 62 kGK~VlL~FsAsWC~pCr~~~--L~~iY~~~ 90 (425)
.||+.++|++|-|||-|-.+- |--.-.++
T Consensus 57 ~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrf 87 (249)
T PF06053_consen 57 NGKPEVIFIGWEGCPYCAAESWALYIALSRF 87 (249)
T ss_pred CCeeEEEEEecccCccchhhHHHHHHHHHhc
Confidence 499999999999999999987 55555555
No 430
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=22.64 E-value=1.7e+02 Score=26.15 Aligned_cols=40 Identities=5% Similarity=-0.075 Sum_probs=31.6
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHHHc-CCCeeEEEeccCC
Q 014387 225 YICLYGGEDMDWIRKFTTATNAVAKTA-GIPLGMVYVGKSN 264 (425)
Q Consensus 225 ~I~lY~g~d~~w~r~FT~~l~~~~k~~-~~~~Eiv~Vs~d~ 264 (425)
.|-+|+.-.||||--+.+.|.++.+.. +..++..-++-..
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~ 41 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRP 41 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSST
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecccccc
Confidence 366788888999999999999997665 7777777776543
No 431
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=22.62 E-value=1.7e+02 Score=27.41 Aligned_cols=45 Identities=9% Similarity=0.022 Sum_probs=31.9
Q ss_pred cCCeEEEEEe--CCCcchHHHHHHHHHHHHHH-cCCCeeEEEeccCCC
Q 014387 221 AEGRYICLYG--GEDMDWIRKFTTATNAVAKT-AGIPLGMVYVGKSNP 265 (425)
Q Consensus 221 ~egk~I~lY~--g~d~~w~r~FT~~l~~~~k~-~~~~~Eiv~Vs~d~~ 265 (425)
..||.+-||| ++.|+.|..=.+.+.+...+ .+..++++-||.|..
T Consensus 29 ~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~ 76 (187)
T PRK10382 29 TEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTH 76 (187)
T ss_pred hCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCH
Confidence 4677766665 66699998756666665433 356799999998865
No 432
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=22.45 E-value=47 Score=28.94 Aligned_cols=44 Identities=16% Similarity=0.342 Sum_probs=25.9
Q ss_pred HHHHHhhccCCCCC-Cccc--eecCCCCCCCCceeecCCCCccccee-eeee
Q 014387 374 PAMRDHLGQLHTPH-HCNR--LVLPGTAGKIPERIICSECGRVMEKF-LMYR 421 (425)
Q Consensus 374 ~a~~~~~~~~~~~~-~c~~--~~~~~~~g~i~~~i~C~~C~r~Me~~-~~y~ 421 (425)
.||+-+|+.+...- .|.. +.+ -.+|....|.+||...+.. ..|.
T Consensus 42 e~L~faf~~~~~~T~~~ega~L~I----e~vp~~~~C~~Cg~~~~~~~~~~~ 89 (117)
T PRK00564 42 SLFVSAFETFREESLVCKDAILDI----VDEKVELECKDCSHVFKPNALDYG 89 (117)
T ss_pred HHHHHHHHHHhcCCcccCCCEEEE----EecCCEEEhhhCCCccccCCccCC
Confidence 35555555544333 3444 333 2578888888888777764 4454
No 433
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=22.43 E-value=1.9e+02 Score=21.90 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=25.6
Q ss_pred EEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCCChhHH
Q 014387 228 LYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSNPKDRV 269 (425)
Q Consensus 228 lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~~e~f 269 (425)
||+...|++|+. ++-++...|+++|.+.+........|
T Consensus 3 Ly~~~~sp~~~~----v~~~l~~~gl~~~~~~~~~~~~~~~~ 40 (74)
T cd03058 3 LLGAWASPFVLR----VRIALALKGVPYEYVEEDLGNKSELL 40 (74)
T ss_pred EEECCCCchHHH----HHHHHHHcCCCCEEEEeCcccCCHHH
Confidence 788888887754 33445667999999987654333334
No 434
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=22.39 E-value=48 Score=23.85 Aligned_cols=16 Identities=25% Similarity=1.014 Sum_probs=11.2
Q ss_pred CCceeecCCCCccccee
Q 014387 401 IPERIICSECGRVMEKF 417 (425)
Q Consensus 401 i~~~i~C~~C~r~Me~~ 417 (425)
-|+.++||.||.. +.+
T Consensus 15 W~~g~~CP~Cg~~-~~~ 30 (46)
T PF12760_consen 15 WPDGFVCPHCGST-KHY 30 (46)
T ss_pred CCCCCCCCCCCCe-eeE
Confidence 4566789999976 443
No 435
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=22.09 E-value=5.9e+02 Score=26.27 Aligned_cols=52 Identities=12% Similarity=0.048 Sum_probs=28.2
Q ss_pred CCeEEEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCCChhHHhhhh
Q 014387 222 EGRYICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSNPKDRVRRNN 273 (425)
Q Consensus 222 egk~I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~~e~f~~~~ 273 (425)
+++.|+|.+|.-..=++...|.+.++++........+.+...++.+.+++..
T Consensus 166 ~~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~~~~~i~~~~ 217 (347)
T PRK14089 166 KEGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFFKGKDLKEIY 217 (347)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCCcHHHHHHHH
Confidence 4578999999884445566664444432211122344445444556666544
No 436
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.02 E-value=8.3e+02 Score=24.68 Aligned_cols=131 Identities=9% Similarity=0.002 Sum_probs=78.5
Q ss_pred eEEEEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccCCChhHHhhhhhhhhccccccc------cCCCcchhhhhHh
Q 014387 224 RYICLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKSNPKDRVRRNNDTIASENLSHI------WQDLTSIWYFWVR 297 (425)
Q Consensus 224 k~I~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d~~~e~f~~~~~~i~~e~ls~~------~~~~~~~~~FW~~ 297 (425)
+...+.-|+|.. -..+...-.+.+++.|+.+|.+-++.+-+++++.+.+..++.+.--|. ++..-.-....-.
T Consensus 34 ~Laii~vg~d~a-s~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~~ 112 (285)
T PRK14189 34 GLAVILVGDNPA-SQVYVRNKVKACEDNGFHSLKDRYPADLSEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIEA 112 (285)
T ss_pred eEEEEEeCCCch-HHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhh
Confidence 444556677743 335555555566778999999999999999999999999988764332 2211111111111
Q ss_pred hh---------hhhhhhhhcCCCCCCchHHHHHHHHhcccCCCCceEEEeccCceeeeccchhHHHHHHHhhh
Q 014387 298 LE---------SMWYSKVQLGRNAETDHVMQEIMRMLTYDSSEGGWAVFARGSAEMASAKGAIFLTCMQEYNT 361 (425)
Q Consensus 298 le---------s~~~sk~~~~~~~~~d~i~~ei~~ll~~~~~~~GWavls~G~~~~~~~~g~~~~~~~~~f~~ 361 (425)
|. ..-.-|+..|+..---.+-+-|.+||.+=+ +--+|.+++|.|+|..+=+-|+..=.
T Consensus 113 I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~aii~lL~~~~------i~l~Gk~vvViGrs~iVGkPla~lL~ 179 (285)
T PRK14189 113 IAPEKDVDGFHVANAGALMTGQPLFRPCTPYGVMKMLESIG------IPLRGAHAVVIGRSNIVGKPMAMLLL 179 (285)
T ss_pred cCcccCcccCChhhhhHhhCCCCCCcCCCHHHHHHHHHHcC------CCCCCCEEEEECCCCccHHHHHHHHH
Confidence 11 111123444544333446778888885542 23477888888887776555555543
No 437
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=21.24 E-value=1.5e+02 Score=21.96 Aligned_cols=33 Identities=21% Similarity=0.232 Sum_probs=24.4
Q ss_pred EEEeCCCcchHHHHHHHHHHHHHHcCCCeeEEEeccC
Q 014387 227 CLYGGEDMDWIRKFTTATNAVAKTAGIPLGMVYVGKS 263 (425)
Q Consensus 227 ~lY~g~d~~w~r~FT~~l~~~~k~~~~~~Eiv~Vs~d 263 (425)
=||+...|++|+.-. .+++..++++|.+-|...
T Consensus 2 ~Ly~~~~s~~~~~~~----~~L~~~~l~~~~~~v~~~ 34 (74)
T cd03051 2 KLYDSPTAPNPRRVR----IFLAEKGIDVPLVTVDLA 34 (74)
T ss_pred EEEeCCCCcchHHHH----HHHHHcCCCceEEEeecc
Confidence 378888899886544 445666999999988754
No 438
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=21.10 E-value=46 Score=26.14 Aligned_cols=14 Identities=29% Similarity=0.797 Sum_probs=11.6
Q ss_pred CceeecCCCCcccc
Q 014387 402 PERIICSECGRVME 415 (425)
Q Consensus 402 ~~~i~C~~C~r~Me 415 (425)
+-++.||.||++.+
T Consensus 4 ~~~v~CP~C~k~~~ 17 (62)
T PRK00418 4 TITVNCPTCGKPVE 17 (62)
T ss_pred CccccCCCCCCccc
Confidence 35789999999975
No 439
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=20.97 E-value=99 Score=28.76 Aligned_cols=102 Identities=22% Similarity=0.295 Sum_probs=52.5
Q ss_pred cccCCCEEEEE-EecCCChHhHHHHHHHHHHHHHhhhccCCCceEEEEEeccCCCCCCchHH--HHHHHHHHhCCCceee
Q 014387 59 EVLRRKMVLLL-ISDLDISQEEVIILEQLYSEARQHQTRHESQYEVVWLPIVDPNMPWTDNK--QKQFQSLQSAMPWYTV 135 (425)
Q Consensus 59 s~LkGK~VlL~-FsAsWC~pCr~~~L~~iY~~~k~~~~k~~~~fEIV~IsIvd~s~~w~D~~--~~~F~~~~~~mPW~aV 135 (425)
+.|-||+=+|. +.+--..-.+.-.|.+.-+..+-. ...|+---|-=.|.. -|.... +..-+.-+...||-.+
T Consensus 55 AqL~GKvRV~~hiAGRtsaKE~Na~lieaIk~a~fp----~~~YQTTTIiN~DDA-i~GtgmFVkssae~~Kke~pwSq~ 129 (184)
T COG3054 55 AQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAKFP----HDRYQTTTIINTDDA-IPGTGMFVKSSAESNKKEYPWSQF 129 (184)
T ss_pred hhccchhhhhhhhhcccchhhhchHHHHHHHhccCC----hHHceeeEEeccCCc-cccccceeecchhhccccCCceee
Confidence 45778874443 433333333333366655544321 234555444210100 000000 1222334567899654
Q ss_pred ccCcccChHHHHHHHHhCCCCCCC-eEEEECCCCcEE
Q 014387 136 YHPSLIDRAVIQFIKEEWQFGKKP-ILVVLDPHGKVV 171 (425)
Q Consensus 136 ~~p~l~D~~~~~~L~~~f~v~~iP-tlVvLD~~GkVv 171 (425)
- +|..+ ..+..|+.+..- ..||+|++|+|-
T Consensus 130 v----lD~~g--vak~AWqL~e~~SaivVlDk~G~Vk 160 (184)
T COG3054 130 V----LDSNG--VAKNAWQLKEESSAVVVLDKDGRVK 160 (184)
T ss_pred E----Eccch--hhhhhhccccccceEEEEcCCCcEE
Confidence 3 46544 566799998875 467999999984
No 440
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=20.75 E-value=3e+02 Score=25.16 Aligned_cols=61 Identities=7% Similarity=0.149 Sum_probs=38.1
Q ss_pred ccccccCCeEEEEEeCCC-cc-hHHHHHHHHHHH---HHHcCCCeeEEEeccCCCh---hHHhhhhhhh
Q 014387 216 ILNWMAEGRYICLYGGED-MD-WIRKFTTATNAV---AKTAGIPLGMVYVGKSNPK---DRVRRNNDTI 276 (425)
Q Consensus 216 i~~~~~egk~I~lY~g~d-~~-w~r~FT~~l~~~---~k~~~~~~Eiv~Vs~d~~~---e~f~~~~~~i 276 (425)
+......||...+|||=- || -|-.-+..+.++ +...+.++++++||-|-.+ +.-++|.+..
T Consensus 45 ~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y~~~~ 113 (174)
T PF02630_consen 45 VTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKYAKKF 113 (174)
T ss_dssp EEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHHHHCH
T ss_pred ecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHHHHhc
Confidence 333457899999998654 53 444444555555 2334789999999999543 3455555443
No 441
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=20.53 E-value=1.5e+02 Score=23.67 Aligned_cols=39 Identities=8% Similarity=0.247 Sum_probs=25.7
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHHH-cCCCeeEEEeccC
Q 014387 225 YICLYGGEDMDWIRKFTTATNAVAKT-AGIPLGMVYVGKS 263 (425)
Q Consensus 225 ~I~lY~g~d~~w~r~FT~~l~~~~k~-~~~~~Eiv~Vs~d 263 (425)
+|-+|....||+|++=-..|.+.... .++.+|.+-|..+
T Consensus 1 ~V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~ 40 (86)
T TIGR02183 1 FVVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAE 40 (86)
T ss_pred CEEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCC
Confidence 36788888899997655555554211 2567777777654
No 442
>PRK13599 putative peroxiredoxin; Provisional
Probab=20.43 E-value=2.4e+02 Score=26.93 Aligned_cols=45 Identities=4% Similarity=-0.058 Sum_probs=31.5
Q ss_pred cCCeEE--EEEeCCCcchHHHHHHHHHHHHHH-cCCCeeEEEeccCCC
Q 014387 221 AEGRYI--CLYGGEDMDWIRKFTTATNAVAKT-AGIPLGMVYVGKSNP 265 (425)
Q Consensus 221 ~egk~I--~lY~g~d~~w~r~FT~~l~~~~k~-~~~~~Eiv~Vs~d~~ 265 (425)
..||.+ +.|-++.|+.|+.=.+.+.+.+.+ .+..++++-||-|..
T Consensus 26 ~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~ 73 (215)
T PRK13599 26 YAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQV 73 (215)
T ss_pred HCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCH
Confidence 356653 455577799998766677666443 356789999999875
No 443
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=20.35 E-value=63 Score=22.65 Aligned_cols=14 Identities=36% Similarity=0.876 Sum_probs=7.6
Q ss_pred eecCCCCcccceee
Q 014387 405 IICSECGRVMEKFL 418 (425)
Q Consensus 405 i~C~~C~r~Me~~~ 418 (425)
+.||+||..--+|+
T Consensus 1 ~~Cp~Cg~~~a~~~ 14 (39)
T PF01096_consen 1 IKCPKCGHNEAVFF 14 (39)
T ss_dssp S--SSS-SSEEEEE
T ss_pred CCCcCCCCCeEEEE
Confidence 57999998655554
No 444
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=20.34 E-value=1.4e+02 Score=27.99 Aligned_cols=52 Identities=17% Similarity=0.116 Sum_probs=31.1
Q ss_pred cCCCccccccccCCe-EEEEEeCCCcchHHHHHHHH---HHHHHHc--CCCeeEEEec
Q 014387 210 DGLDPVILNWMAEGR-YICLYGGEDMDWIRKFTTAT---NAVAKTA--GIPLGMVYVG 261 (425)
Q Consensus 210 d~~d~~i~~~~~egk-~I~lY~g~d~~w~r~FT~~l---~~~~k~~--~~~~Eiv~Vs 261 (425)
+|.|+.....-..|+ .|--||+=.||.|+.|.+.+ ..+.+.. +..|+.+++.
T Consensus 24 ~G~~Y~~~~~p~~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~~ 81 (207)
T PRK10954 24 DGKQYTTLDKPVAGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHVE 81 (207)
T ss_pred CCceeEEecCcCCCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEeccc
Confidence 355555432222333 46667777799999999866 4554443 4456665654
No 445
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=20.07 E-value=59 Score=22.49 Aligned_cols=13 Identities=23% Similarity=0.575 Sum_probs=9.1
Q ss_pred eeecCCCCcccce
Q 014387 404 RIICSECGRVMEK 416 (425)
Q Consensus 404 ~i~C~~C~r~Me~ 416 (425)
.|.||+|+...++
T Consensus 2 ~i~CP~C~~~f~v 14 (37)
T PF13719_consen 2 IITCPNCQTRFRV 14 (37)
T ss_pred EEECCCCCceEEc
Confidence 5788888876543
Done!