BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014388
(425 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 219 bits (558), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 133/440 (30%), Positives = 226/440 (51%), Gaps = 29/440 (6%)
Query: 3 EPVFIQPETETCKEPYFLSSLDHAVIDMMK-TVYIYKLDGKKSGVEARDLIKQALAKVLV 61
E ++P ET + S++D V + +VY Y+ G + +A+ ++K AL++ LV
Sbjct: 9 ESTMVRPAQETPGRNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFDAK-VLKDALSRALV 67
Query: 62 HYYPLAGRLRRSSSGNLFVECNNSIKGVPFVEAVADSEIEKLGDITVPDTVMLENLVYDV 121
+YP+AGRL+R G + +ECN +GV FVEA +D ++ GD T+ L L+ V
Sbjct: 68 PFYPMAGRLKRDEDGRIEIECNG--EGVLFVEAESDGVVDDFGDFA--PTLELRRLIPAV 123
Query: 122 PGVENILEMPLMTAQVTRFKCGGLVFGMAINHCMVDGISAMQFVNSWAETARGITLTMPP 181
+ I L+ QVT FKCGG+ G+ + H DG S + F+NSW++ ARG+ +T+PP
Sbjct: 124 DYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMARGLDVTLPP 183
Query: 182 VLDRSILM---PKKPSVDKNDSETLTEVEIS-DVSKIETLYQEQKMICKSFKFDQNRLAG 237
+DR++L P +P + + +++S +K +++ + I FK + +++
Sbjct: 184 FIDRTLLRARDPPQPQFQHIEYQPPPALKVSPQTAKSDSVPETAVSI---FKLTREQISA 240
Query: 238 LKKKAMENGELTYCSSFTVLAAFLWRARSQALKMKPQQQTKLVFTVDIRSKLKTNPLPKG 297
LK K+ E+G SS+ +LA +WR +A ++ Q TKL D R++L+ + LP G
Sbjct: 241 LKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRARLRPS-LPPG 299
Query: 298 FFGNGVLVTQCLCTAEELVQKPFSFAVKMVQNAIQMVNEDYIKGFIESFDVNARPPSWTA 357
+FGN + + A +L KP +A + +A+ ++ DY++ ++ ++ P A
Sbjct: 300 YFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALDYLELQ---PDLKA 356
Query: 358 -----------TLVITSWTRIAFNAADFGWGEPTQFGSTRIPKE-VGLFIPEGKDKNGIV 405
L ITSW R+ + ADFGWG P G I E + +P + +
Sbjct: 357 LVRGAHTFKCPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFILPSPTNDGSMS 416
Query: 406 LVLGLPVSAMNTFQELITSI 425
+ + L M FQ + I
Sbjct: 417 VAISLQGEHMKLFQSFLYDI 436
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 219 bits (557), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 132/439 (30%), Positives = 221/439 (50%), Gaps = 27/439 (6%)
Query: 3 EPVFIQPETETCKEPYFLSSLDHAVIDMMK-TVYIYKLDGKKSGVEARDLIKQALAKVLV 61
E ++P ET + S++D V + +VY Y+ G + +A+ ++K AL++ LV
Sbjct: 12 ESTMVRPAQETPGRNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFDAK-VLKDALSRALV 70
Query: 62 HYYPLAGRLRRSSSGNLFVECNNSIKGVPFVEAVADSEIEKLGDITVPDTVMLENLVYDV 121
+YP+AGRL+R G + +ECN +GV FVEA +D ++ GD T+ L L+ V
Sbjct: 71 PFYPMAGRLKRDEDGRIEIECNG--EGVLFVEAESDGVVDDFGDFA--PTLELRRLIPAV 126
Query: 122 PGVENILEMPLMTAQVTRFKCGGLVFGMAINHCMVDGISAMQFVNSWAETARGITLTMPP 181
+ I L+ QVT FKCGG+ G+ + H DG S + F+NSW++ ARG+ +T+PP
Sbjct: 127 DYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMARGLDVTLPP 186
Query: 182 VLDRSILM---PKKPSVDKNDSETLTEVEISDVSKIETLYQEQKMICKSFKFDQNRLAGL 238
+DR++L P +P + + + +S + E + FK + +++ L
Sbjct: 187 FIDRTLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSVPETAVSI--FKLTREQISAL 244
Query: 239 KKKAMENGELTYCSSFTVLAAFLWRARSQALKMKPQQQTKLVFTVDIRSKLKTNPLPKGF 298
K K+ E+G SS+ +LA +WR +A ++ Q TKL D R++L+ + LP G+
Sbjct: 245 KAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRARLRPS-LPPGY 303
Query: 299 FGNGVLVTQCLCTAEELVQKPFSFAVKMVQNAIQMVNEDYIKGFIESFDVNARPPSWTA- 357
FGN + + A +L KP +A + +A+ ++ DY++ ++ ++ P A
Sbjct: 304 FGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALDYLELQ---PDLKAL 360
Query: 358 ----------TLVITSWTRIAFNAADFGWGEPTQFGSTRIPKE-VGLFIPEGKDKNGIVL 406
L ITSW R+ + ADFGWG P G I E + +P + + +
Sbjct: 361 VRGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFILPSPTNDGSMSV 420
Query: 407 VLGLPVSAMNTFQELITSI 425
+ L M FQ + I
Sbjct: 421 AISLQGEHMKLFQSFLYDI 439
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 214 bits (546), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 131/439 (29%), Positives = 220/439 (50%), Gaps = 27/439 (6%)
Query: 3 EPVFIQPETETCKEPYFLSSLDHAVIDMMK-TVYIYKLDGKKSGVEARDLIKQALAKVLV 61
E ++P ET + S++D V + +VY Y+ G + +A+ ++K AL++ LV
Sbjct: 12 ESTMVRPAQETPGRNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFDAK-VLKDALSRALV 70
Query: 62 HYYPLAGRLRRSSSGNLFVECNNSIKGVPFVEAVADSEIEKLGDITVPDTVMLENLVYDV 121
+YP+AGRL+R G + +ECN +GV FVEA +D ++ GD T+ L L+ V
Sbjct: 71 PFYPMAGRLKRDEDGRIEIECNG--EGVLFVEAESDGVVDDFGDFA--PTLELRRLIPAV 126
Query: 122 PGVENILEMPLMTAQVTRFKCGGLVFGMAINHCMVDGISAMQFVNSWAETARGITLTMPP 181
+ I L+ QVT FK GG+ G+ + H DG S + F+NSW++ ARG+ +T+PP
Sbjct: 127 DYSQGISSYALLVLQVTYFKXGGVSLGVGMRHHAADGFSGLHFINSWSDMARGLDVTLPP 186
Query: 182 VLDRSILM---PKKPSVDKNDSETLTEVEISDVSKIETLYQEQKMICKSFKFDQNRLAGL 238
+DR++L P +P + + + +S + E + FK + +++ L
Sbjct: 187 FIDRTLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSVPETAVSI--FKLTREQISAL 244
Query: 239 KKKAMENGELTYCSSFTVLAAFLWRARSQALKMKPQQQTKLVFTVDIRSKLKTNPLPKGF 298
K K+ E+G SS+ +LA +WR +A ++ Q TKL D R++L+ + LP G+
Sbjct: 245 KAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRARLRPS-LPPGY 303
Query: 299 FGNGVLVTQCLCTAEELVQKPFSFAVKMVQNAIQMVNEDYIKGFIESFDVNARPPSWTA- 357
FGN + + A +L KP +A + +A+ ++ DY++ ++ ++ P A
Sbjct: 304 FGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALDYLELQ---PDLKAL 360
Query: 358 ----------TLVITSWTRIAFNAADFGWGEPTQFGSTRIPKE-VGLFIPEGKDKNGIVL 406
L ITSW R+ + ADFGWG P G I E + +P + + +
Sbjct: 361 VRGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFILPSPTNDGSMSV 420
Query: 407 VLGLPVSAMNTFQELITSI 425
+ L M FQ + I
Sbjct: 421 AISLQGEHMKLFQSFLYDI 439
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 107/412 (25%), Positives = 189/412 (45%), Gaps = 54/412 (13%)
Query: 9 PETETCKEPYFLSSLDHAVIDMMKTVYIY---KLDGKKSGVEARDLIKQALAKVLVHYYP 65
P++ C Y +S LD ++ ++ LD + +KQ+L+KVL H+YP
Sbjct: 20 PQSLKC---YKISHLDQLLLTCHIPFILFYPNPLDSNLDPAQTSQHLKQSLSKVLTHFYP 76
Query: 66 LAGRLRRSSSGNLFVECNNSIKGVPFVEAVADSEIEKLGDITVPDTVMLENLVYDVPG-- 123
LAGR+ +SS V+CN+S GVPFVEA +++ + + + V LE L +P
Sbjct: 77 LAGRINVNSS----VDCNDS--GVPFVEARVQAQLSQ----AIQNVVELEKLDQYLPSAA 126
Query: 124 -----VENILEMPLMTAQVTRFKCGGLVFGMAINHCMVDGISAMQFVNSWAETARGITLT 178
+E ++PL +++ F+CGG G+ ++H + D +S F+N+W T RG T
Sbjct: 127 YPGGKIEVNEDVPL-AVKISFFECGGTAIGVNLSHKIADVLSLATFLNAWTATCRGETEI 185
Query: 179 MPPVLDRSILMPKKPSVDKNDSETLTEVEISDVSKIETLYQEQKMICKSFKFDQNRLAGL 238
+ P D + P VD S L ++ ++ K F FD+ ++ L
Sbjct: 186 VLPNFD--LAARHFPPVDNTPSPELVP--------------DENVVMKRFVFDKEKIGAL 229
Query: 239 KKKAMENGELTYCSSFTVLAAFLWRARSQALKMKPQQQTKLVF--TVDIRSKLKTNPLPK 296
+ +A E S ++ A++W+ + K + K V V++RS++ PLP
Sbjct: 230 RAQASSASEEKNFSRVQLVVAYIWKHVIDVTRAKYGAKNKFVVVQAVNLRSRMNP-PLPH 288
Query: 297 GFFGNGVLVTQCLCTAEELVQKPFSFAVKMVQNAIQMVNEDY----IKGFIESFDVNARP 352
GN + T + K F + ++ +++ +D+ +KG +++ +
Sbjct: 289 YAMGN--IATLLFAAVDAEWDKDFPDLIGPLRTSLEKTEDDHNHELLKGMTCLYELEPQ- 345
Query: 353 PSWTATLVITSWTRIAFNAADFGWGEPTQFGSTRIPKEVGLFIPEGKDKNGI 404
L TSW R+ F DFGWG+P +T PK + + + +G+
Sbjct: 346 ----ELLSFTSWCRLGFYDLDFGWGKPLSACTTTFPKRNAALLMDTRSGDGV 393
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 94/397 (23%), Positives = 160/397 (40%), Gaps = 59/397 (14%)
Query: 52 IKQALAKVLVHYYPLAGRL---------------RRSSSGNLFVECNNSIKGVPFVEAVA 96
IK +L+ L H+YP G+L S F ECN + +
Sbjct: 65 IKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDLNEL---TGNH 121
Query: 97 DSEIEKLGDITVPDTVMLENLVYDVPGVENILEMPLMTAQVTRFKCGGLVFGMAINHCMV 156
+K D+ VP ++ + + + +++PL + QVT F G+ G+ +HC+
Sbjct: 122 PRNCDKFYDL-VP-------ILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLG 173
Query: 157 DGISAMQFVNSWAETARG-------ITLTMPPVLDRSILMP-------KKPSVDKNDSET 202
D + F+ +W AR + P+ DR I P K+ V+ + +
Sbjct: 174 DASTRFCFLKAWTSIARSGNNDESFLANGTRPLYDRIIKYPMLDEAYLKRAKVESFNEDY 233
Query: 203 LTEVEISDVSKIETLYQEQKMICKSFKFDQNRLAGLKKKAMENGELTYCSSFTVLAAFLW 262
+T+ K+ + + + K LA L L Y SSFTV A++W
Sbjct: 234 VTQSLAGPSDKLRATFILTRAVINQLK--DRVLAQLPT-------LEYVSSFTVACAYIW 284
Query: 263 RARSQALKMKPQQQTKLVFTVDIRSKLKTNPLPKGFFGNGVLVTQCLCTAEELVQKP-FS 321
+++ K Q F +D R+++K P+P +FGN V + L+ K F
Sbjct: 285 SCIAKSRNDKLQL---FGFPIDRRARMKP-PIPTAYFGNCVGGCAAIAKTNLLIGKEGFI 340
Query: 322 FAVKMVQNAIQMVNEDYIKGFI----ESFDVNARPPSWTATLVITSWTRIAFNAADFGWG 377
A K++ + DY G + ESF+ T ++ ++ F DFGWG
Sbjct: 341 TAAKLIGENLHKTLTDYKDGVLKDDMESFNDLVSEGMPTTMTWVSGTPKLRFYDMDFGWG 400
Query: 378 EPTQFGSTRIPKEVGLFIPEGKDKNGIVLVLGLPVSA 414
+P + + I + I K+ N L +G+ +SA
Sbjct: 401 KPKKLETVSIDHNGAISINSCKESNE-DLEIGVCISA 436
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 94/397 (23%), Positives = 159/397 (40%), Gaps = 59/397 (14%)
Query: 52 IKQALAKVLVHYYPLAGRL---------------RRSSSGNLFVECNNSIKGVPFVEAVA 96
IK +L+ L H+YP G+L S F ECN + +
Sbjct: 65 IKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDLNEL---TGNH 121
Query: 97 DSEIEKLGDITVPDTVMLENLVYDVPGVENILEMPLMTAQVTRFKCGGLVFGMAINHCMV 156
+K D+ VP ++ + + + +++PL + QVT F G+ G+ +HC+
Sbjct: 122 PRNCDKFYDL-VP-------ILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLG 173
Query: 157 DGISAMQFVNSWAETARG-------ITLTMPPVLDRSILMP-------KKPSVDKNDSET 202
D + F+ +W AR + P+ DR I P K+ V+ + +
Sbjct: 174 DASTRFCFLKAWTSIARSGNNDESFLANGTRPLYDRIIKYPXLDEAYLKRAKVESFNEDY 233
Query: 203 LTEVEISDVSKIETLYQEQKMICKSFKFDQNRLAGLKKKAMENGELTYCSSFTVLAAFLW 262
+T+ K+ + + + K LA L L Y SSFTV A++W
Sbjct: 234 VTQSLAGPSDKLRATFILTRAVINQLK--DRVLAQLPT-------LEYVSSFTVACAYIW 284
Query: 263 RARSQALKMKPQQQTKLVFTVDIRSKLKTNPLPKGFFGNGVLVTQCLCTAEELVQKP-FS 321
+++ K Q F +D R++ K P+P +FGN V + L+ K F
Sbjct: 285 SCIAKSRNDKLQL---FGFPIDRRARXKP-PIPTAYFGNCVGGCAAIAKTNLLIGKEGFI 340
Query: 322 FAVKMVQNAIQMVNEDYIKGFI----ESFDVNARPPSWTATLVITSWTRIAFNAADFGWG 377
A K++ + DY G + ESF+ T ++ ++ F DFGWG
Sbjct: 341 TAAKLIGENLHKTLTDYKDGVLKDDXESFNDLVSEGXPTTXTWVSGTPKLRFYDXDFGWG 400
Query: 378 EPTQFGSTRIPKEVGLFIPEGKDKNGIVLVLGLPVSA 414
+P + + I + I K+ N L +G+ +SA
Sbjct: 401 KPKKLETVSIDHNGAISINSCKESNE-DLEIGVCISA 436
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 90/370 (24%), Positives = 156/370 (42%), Gaps = 43/370 (11%)
Query: 52 IKQALAKVLVHYYPLAGRLRRSSSGNLFVE----CNNSIKGVPFVEAVADSEIEKLGDIT 107
+K +L+ L +Y PLAG + + + E NS+ V F E+ D + L
Sbjct: 60 LKDSLSLTLKYYLPLAGNVACPQDWSGYPELRYVTGNSVS-VIFSES--DXDFNYLIGYH 116
Query: 108 VPDTVMLENLV------YDVPGVENILEMPLMTAQVTRFKCGGLVFGMAINHCMVDGISA 161
+T + V D PGV+ P++ QVT F G+ G +H DG +
Sbjct: 117 PRNTKDFYHFVPQLAEPKDAPGVQ---LAPVLAIQVTLFPNHGISIGFTNHHVAGDGATI 173
Query: 162 MQFVNSWA------ETARGITLTMPPVLDRSILMPKKPSVDKNDSETLTEVEISDVSKIE 215
++FV +WA + + P DRS++ K P+ S + K
Sbjct: 174 VKFVRAWALLNKFGGDEQFLANEFIPFYDRSVI--KDPN-GVGXSIWNEXKKYKHXXKXS 230
Query: 216 TLYQEQKMICKSFKFDQNRLAGLKKKAM-ENGELTYCSSFTVLAAFLWRA--RSQALKMK 272
+ + +F ++ + LK + +LT+ +SFTV A++W +S+A +
Sbjct: 231 DVVTPPDKVRGTFIITRHDIGKLKNLVLTRRPKLTHVTSFTVTCAYVWTCIIKSEAATGE 290
Query: 273 PQQQTKLVF---TVDIRSKLKTNPLPKGFFGNGVLVTQCLCTAEELVQKP-FSFAVKMVQ 328
+ F D R++ PLP +FGN ++ +L K F+ AV+++
Sbjct: 291 EIDENGXEFFGCAADCRAQFNP-PLPPSYFGNALVGYVARTRQVDLAGKEGFTIAVELIG 349
Query: 329 NAI--QMVNEDYI---KGFIESFDVNARPPSWTATLVITSWTRIAFNAADFGWGEPTQFG 383
AI + +E++I F E V+A+ +L + ++ AADFGWG P +
Sbjct: 350 EAIRKRXKDEEWILSGSWFKEYDKVDAK-----RSLSVAGSPKLDLYAADFGWGRPEKLE 404
Query: 384 STRIPKEVGL 393
I + G+
Sbjct: 405 FVSIDNDDGI 414
>pdb|2ZBA|A Chain A, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
pdb|2ZBA|B Chain B, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
pdb|2ZBA|C Chain C, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
pdb|2ZBA|D Chain D, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
Length = 459
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 35/169 (20%), Positives = 66/169 (39%), Gaps = 28/169 (16%)
Query: 228 FKFDQNRLAGLKKKAME--NGELTYCSSFTVLAAFLWRARSQA--LKMKPQQQTKLVFTV 283
F F L+ LK A + + + S+ L+AF+W++ S+ ++ T+ V
Sbjct: 242 FSFTPKALSELKDAATKTLDASSKFVSTDDALSAFIWQSTSRVRLARLDASTPTEFCRAV 301
Query: 284 DIRSKLKTNPLPKGFFGNGVLVTQCLCTAEELVQKPFSFAVKMVQNAIQMVNED------ 337
D R + G N T T E+ +P +++ + N D
Sbjct: 302 DXRGPXGVSSTYPGLLQN---XTYHDSTVAEIANEPLGATASRLRSEL---NSDRLRRRT 355
Query: 338 -----YIKGFIE----SFDVNARPPSWTATLVITSWTRIAFNAADFGWG 377
Y G + S +A P ++++ ++SW ++ DFG+G
Sbjct: 356 QALATYXHGLPDKSSVSLTADANP---SSSIXLSSWAKVGCWEYDFGFG 401
>pdb|2PMQ|A Chain A, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Roseovarius Sp. Htcc2601
pdb|2PMQ|B Chain B, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Roseovarius Sp. Htcc2601
Length = 377
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Query: 4 PVFIQPETETCKEPYFLSSLDHAVIDMMKTVYIYKLDGKKSGVEARDLIKQALAKVLVHY 63
P+ + ++ C Y S+LD AV D+ GK+ GV +L+ AL + Y
Sbjct: 86 PLHTRXDSLLCGHNYAKSALDIAVHDLW---------GKRLGVPVHELLGGALTDSVSSY 136
Query: 64 YPLA 67
Y L
Sbjct: 137 YSLG 140
>pdb|2YWQ|A Chain A, Crystal Structure Of Thermus Thermophilus Protein Y
N-Terminal Domain
pdb|2YWQ|B Chain B, Crystal Structure Of Thermus Thermophilus Protein Y
N-Terminal Domain
pdb|2YWQ|C Chain C, Crystal Structure Of Thermus Thermophilus Protein Y
N-Terminal Domain
pdb|2YWQ|D Chain D, Crystal Structure Of Thermus Thermophilus Protein Y
N-Terminal Domain
Length = 105
Score = 29.6 bits (65), Expect = 3.6, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 36 IYKLDGKKSGVEARDLIKQALAKVLVHYYPLAGRLRRSSSGNLFVECNNSIKGVPFVEAV 95
IYKL G+ +E D I+ + K L RL R G L + S+ G P VE
Sbjct: 3 IYKLIGRN--LEITDAIRDYVEKKL-------ARLDRYQDGELXAKVVLSLAGSPHVEKK 53
Query: 96 ADSEIE 101
A +EI+
Sbjct: 54 ARAEIQ 59
>pdb|2W79|A Chain A, Establishing Wild-Type Levels Of Catalytic Activity On
Natural And Artificial (Ba)8-Barrel Protein Scaffolds
pdb|2W79|B Chain B, Establishing Wild-Type Levels Of Catalytic Activity On
Natural And Artificial (Ba)8-Barrel Protein Scaffolds
Length = 241
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 92 VEAVADSEIEKLGDITVPD-------TVMLENLVYDVPGVENILEMPLMTAQVTRFKCGG 144
+E + +EIEK+G + D + E V G+ + E L TAQ + G
Sbjct: 158 LEEIVHTEIEKVGTLQEHDFSLTKKIAIEAEVKVLAAGGISS--ENSLKTAQKVHTETNG 215
Query: 145 LVFGMAINHCMVDGISAMQFVNSWA 169
L+ G+ + ++GI ++ + +A
Sbjct: 216 LLKGVIVGRAFLEGILTVEVMKRYA 240
>pdb|2PD3|A Chain A, Crystal Structure Of The Helicobacter Pylori Enoyl-Acyl
Carrier Protein Reductase In Complex With
Hydroxydiphenyl Ether Compounds, Triclosan And Diclosan
pdb|2PD3|B Chain B, Crystal Structure Of The Helicobacter Pylori Enoyl-Acyl
Carrier Protein Reductase In Complex With
Hydroxydiphenyl Ether Compounds, Triclosan And Diclosan
pdb|2PD3|C Chain C, Crystal Structure Of The Helicobacter Pylori Enoyl-Acyl
Carrier Protein Reductase In Complex With
Hydroxydiphenyl Ether Compounds, Triclosan And Diclosan
pdb|2PD3|D Chain D, Crystal Structure Of The Helicobacter Pylori Enoyl-Acyl
Carrier Protein Reductase In Complex With
Hydroxydiphenyl Ether Compounds, Triclosan And Diclosan
pdb|2PD4|A Chain A, Crystal Structure Of The Helicobacter Pylori Enoyl-Acyl
Carrier Protein Reductase In Complex With
Hydroxydiphenyl Ether Compounds, Triclosan And Diclosan
pdb|2PD4|B Chain B, Crystal Structure Of The Helicobacter Pylori Enoyl-Acyl
Carrier Protein Reductase In Complex With
Hydroxydiphenyl Ether Compounds, Triclosan And Diclosan
pdb|2PD4|C Chain C, Crystal Structure Of The Helicobacter Pylori Enoyl-Acyl
Carrier Protein Reductase In Complex With
Hydroxydiphenyl Ether Compounds, Triclosan And Diclosan
pdb|2PD4|D Chain D, Crystal Structure Of The Helicobacter Pylori Enoyl-Acyl
Carrier Protein Reductase In Complex With
Hydroxydiphenyl Ether Compounds, Triclosan And Diclosan
Length = 275
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 144 GLVFGMAINHCMVDGISAMQFVNSWAETARGITLTMPPVLDRSILMPKKPSVDKNDSETL 203
GL+ G+A N + GI+ F +G TL L+ S+ +P + +S +
Sbjct: 9 GLIVGVANNKSIAYGIAQSCF-------NQGATLAFT-YLNESLEKRVRPIAQELNSPYV 60
Query: 204 TEVEISDVSKIETLYQEQKMICKSFKFDQNRLAGLKKKAME 244
E+++S ++LY K S F + +A K+A+E
Sbjct: 61 YELDVSKEEHFKSLYNSVKKDLGSLDFIVHSVAFAPKEALE 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,045,327
Number of Sequences: 62578
Number of extensions: 469543
Number of successful extensions: 1106
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1072
Number of HSP's gapped (non-prelim): 13
length of query: 425
length of database: 14,973,337
effective HSP length: 102
effective length of query: 323
effective length of database: 8,590,381
effective search space: 2774693063
effective search space used: 2774693063
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)