Query 014390
Match_columns 425
No_of_seqs 216 out of 727
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 10:43:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014390.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014390hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x5b_A Signal transducing adap 100.0 1.1E-42 3.7E-47 316.7 18.2 142 3-145 17-158 (163)
2 3ldz_A STAM-1, signal transduc 100.0 1.1E-42 3.7E-47 309.3 15.9 134 3-138 7-140 (140)
3 1mhq_A ADP-ribosylation factor 100.0 3.8E-42 1.3E-46 308.5 16.4 136 3-142 3-143 (148)
4 1elk_A Target of MYB1; superhe 100.0 8E-41 2.7E-45 302.6 16.2 137 2-139 17-157 (157)
5 1juq_A ADP-ribosylation factor 100.0 1.8E-40 6.2E-45 304.2 17.5 137 3-143 15-158 (171)
6 3g2s_A C-terminal fragment of 100.0 1.5E-40 5E-45 298.4 15.8 130 3-136 13-147 (149)
7 3zyq_A Hepatocyte growth facto 100.0 1.7E-39 5.9E-44 309.8 16.4 139 3-142 10-148 (226)
8 3rru_A TOM1L1 protein; structu 100.0 2.8E-39 9.5E-44 291.0 12.5 132 2-134 17-152 (152)
9 1dvp_A HRS, hepatocyte growth 100.0 3.9E-37 1.3E-41 292.2 18.0 140 2-142 6-145 (220)
10 1o3x_A ADP-ribosylation factor 99.9 7.9E-22 2.7E-26 174.7 8.6 123 149-271 3-138 (140)
11 1wrd_A TOM1, target of MYB pro 99.8 2E-21 6.7E-26 163.9 9.9 89 184-272 11-99 (103)
12 1naf_A ADP-ribosylation factor 99.8 6.5E-22 2.2E-26 178.2 3.4 125 149-273 12-149 (158)
13 1oxz_A ADP-ribosylation factor 99.8 6.3E-22 2.1E-26 182.8 3.1 126 149-274 28-166 (186)
14 1wr6_A ADP-ribosylation factor 99.8 1.1E-19 3.7E-24 155.1 5.5 90 185-274 7-97 (111)
15 1vdy_A Hypothetical protein (R 98.0 2.9E-05 9.9E-10 68.5 10.3 105 3-109 13-128 (140)
16 1sz9_A PCF11 protein; RNA poly 97.9 0.00012 4E-09 64.8 12.1 113 19-133 24-138 (144)
17 1inz_A EPS15-interacting porte 97.6 0.00038 1.3E-08 61.9 11.0 106 2-108 24-137 (148)
18 1xgw_A Epsin 4; ENTH, enthopro 97.6 0.0005 1.7E-08 62.8 11.7 104 2-108 35-149 (176)
19 1eyh_A Epsin; superhelix of he 97.4 0.00054 1.8E-08 60.6 8.5 104 2-109 6-120 (144)
20 3onk_A Epsin-3, ENT3; helix, p 97.2 0.0019 6.5E-08 57.5 10.5 105 2-109 12-127 (150)
21 2pjw_H Uncharacterized protein 97.2 0.00046 1.6E-08 56.1 5.9 76 192-269 9-86 (88)
22 2pjw_V Vacuolar protein sortin 96.5 0.0087 3E-07 48.9 7.9 57 211-269 28-84 (91)
23 4flb_A Regulation of nuclear P 96.4 0.0095 3.2E-07 51.1 7.7 91 20-111 22-112 (132)
24 3d9j_A RNA-binding protein 16; 96.2 0.018 6.2E-07 50.6 8.8 89 22-111 26-119 (145)
25 4fu3_A Regulation of nuclear P 95.3 0.017 5.9E-07 49.5 5.0 89 21-111 22-113 (135)
26 3zyl_A Phosphatidylinositol-bi 93.7 0.27 9.4E-06 47.4 9.8 75 3-77 30-104 (271)
27 1hx8_A Synapse-enriched clathr 93.5 0.3 1E-05 47.7 9.7 76 3-78 25-100 (299)
28 2qk2_A LP04448P; mini spindles 93.5 0.39 1.3E-05 43.9 10.0 94 16-112 26-128 (242)
29 2km4_A Regulator of TY1 transp 93.4 0.57 1.9E-05 40.7 10.3 90 22-112 22-116 (142)
30 3zym_A Phosphatidylinositol-bi 93.3 0.34 1.2E-05 47.7 9.8 75 3-77 30-104 (310)
31 2qk1_A Protein STU2; STU2P, XM 89.7 2 6.7E-05 40.2 10.4 78 36-115 144-224 (249)
32 2qk1_A Protein STU2; STU2P, XM 87.5 2 6.9E-05 40.1 8.8 96 15-113 26-135 (249)
33 3f1i_H Hepatocyte growth facto 86.8 1.2 4.1E-05 36.4 5.8 74 186-261 4-77 (98)
34 3clj_A Protein NRD1; CTD-inter 86.2 3.8 0.00013 36.4 9.3 94 19-112 22-130 (157)
35 4ffb_C Protein STU2; tubulin f 84.2 2.2 7.5E-05 39.9 7.3 75 36-114 137-215 (278)
36 2qk2_A LP04448P; mini spindles 83.6 5 0.00017 36.3 9.4 76 35-113 130-207 (242)
37 3b2a_A TON_1937, putative unch 82.9 3.3 0.00011 39.6 7.8 72 36-109 31-102 (265)
38 4db6_A Armadillo repeat protei 79.9 8.5 0.00029 33.4 9.2 70 38-109 138-207 (210)
39 4ffb_C Protein STU2; tubulin f 79.4 3.8 0.00013 38.3 7.0 72 39-111 56-132 (278)
40 4hxt_A De novo protein OR329; 76.5 23 0.00079 31.0 11.1 94 16-111 139-241 (252)
41 4db6_A Armadillo repeat protei 76.1 17 0.00059 31.3 10.0 92 15-108 22-122 (210)
42 1xqr_A HSPBP1 protein; armadil 73.5 9.1 0.00031 36.8 8.0 69 39-108 82-151 (296)
43 1xqr_A HSPBP1 protein; armadil 72.6 13 0.00046 35.6 9.0 70 38-109 167-236 (296)
44 4hxt_A De novo protein OR329; 72.1 14 0.00049 32.4 8.5 69 39-109 3-71 (252)
45 1ibr_B P95, importin beta-1 su 68.9 48 0.0016 31.9 12.2 92 36-130 364-456 (462)
46 3dad_A FH1/FH2 domain-containi 68.8 24 0.00084 34.9 9.9 93 39-135 203-306 (339)
47 3f1i_S STAM-1, signal transduc 66.8 43 0.0015 26.2 8.9 71 194-267 6-76 (77)
48 4db8_A Armadillo-repeat protei 65.7 16 0.00056 32.4 7.5 68 39-108 55-122 (252)
49 4db8_A Armadillo-repeat protei 63.0 18 0.00063 32.1 7.4 69 38-108 138-206 (252)
50 3ltj_A Alpharep-4; protein eng 61.6 53 0.0018 28.0 10.0 78 15-107 24-101 (201)
51 3nmw_A APC variant protein; AR 60.4 23 0.0008 34.7 8.1 68 39-106 128-195 (354)
52 4b8j_A Importin subunit alpha- 59.7 21 0.00072 35.9 7.9 73 36-108 72-144 (528)
53 2jdq_A Importin alpha-1 subuni 58.8 29 0.001 33.4 8.5 72 38-110 107-178 (450)
54 3ltm_A Alpha-REP4; protein eng 57.3 29 0.00099 30.1 7.5 79 14-107 90-168 (211)
55 3dad_A FH1/FH2 domain-containi 57.0 46 0.0016 33.0 9.4 59 43-101 259-326 (339)
56 3tt9_A Plakophilin-2; cell adh 56.3 45 0.0015 30.9 8.9 69 38-107 52-120 (233)
57 2of3_A ZYG-9; multifunctional 56.0 37 0.0013 32.4 8.4 67 35-108 164-233 (266)
58 3ltj_A Alpharep-4; protein eng 56.0 66 0.0023 27.4 9.6 57 38-107 14-70 (201)
59 1wa5_B Importin alpha subunit; 55.3 34 0.0012 34.5 8.6 94 16-110 352-456 (530)
60 2jdq_A Importin alpha-1 subuni 54.8 52 0.0018 31.6 9.5 72 38-110 318-389 (450)
61 3ltm_A Alpha-REP4; protein eng 53.5 70 0.0024 27.5 9.4 77 16-107 30-106 (211)
62 4b8j_A Importin subunit alpha- 52.4 60 0.0021 32.4 9.9 72 38-110 160-231 (528)
63 2of3_A ZYG-9; multifunctional 49.5 44 0.0015 31.8 7.7 94 16-111 57-161 (266)
64 1te4_A Conserved protein MTH18 48.5 69 0.0024 25.7 8.0 73 17-104 54-126 (131)
65 1b3u_A Protein (protein phosph 48.0 36 0.0012 34.0 7.3 67 37-108 518-584 (588)
66 3l6x_A Catenin delta-1; cateni 47.7 35 0.0012 36.1 7.4 68 39-106 91-158 (584)
67 1w63_A Adapter-related protein 47.0 76 0.0026 33.1 9.9 84 18-108 290-376 (618)
68 1hu3_A EIF4GII; heat repeat, t 46.6 98 0.0034 28.8 9.7 90 20-113 148-241 (260)
69 3grl_A General vesicular trans 45.6 78 0.0027 34.0 9.6 82 23-109 111-193 (651)
70 3nmz_A APC variant protein; pr 45.5 45 0.0015 34.1 7.6 69 38-106 243-311 (458)
71 2z6g_A B-catenin; FULL-length, 45.4 61 0.0021 35.0 9.0 72 38-111 234-305 (780)
72 1wa5_B Importin alpha subunit; 45.0 35 0.0012 34.4 6.7 72 36-107 85-156 (530)
73 2vgl_A Adaptor protein complex 44.9 86 0.0029 33.0 9.9 69 36-108 327-395 (621)
74 2z6g_A B-catenin; FULL-length, 44.7 70 0.0024 34.5 9.4 72 36-108 148-219 (780)
75 1xm9_A Plakophilin 1; armadill 44.7 61 0.0021 32.4 8.4 69 38-107 44-112 (457)
76 1qgr_A Protein (importin beta 44.2 1.8E+02 0.0062 30.6 12.4 76 36-114 364-440 (876)
77 1ibr_B P95, importin beta-1 su 44.0 65 0.0022 30.9 8.3 73 37-111 127-203 (462)
78 2bpt_A Importin beta-1 subunit 43.8 2E+02 0.0068 30.1 12.7 76 36-114 367-443 (861)
79 2z6h_A Catenin beta-1, beta-ca 43.6 70 0.0024 33.2 9.0 70 39-110 99-168 (644)
80 1jdh_A Beta-catenin; beta-cate 43.5 75 0.0026 31.3 8.8 72 36-108 15-86 (529)
81 2bpt_A Importin beta-1 subunit 43.4 87 0.003 33.0 9.7 76 37-114 638-714 (861)
82 1jdh_A Beta-catenin; beta-cate 43.2 78 0.0027 31.2 8.9 70 39-110 102-171 (529)
83 3tpo_A Importin subunit alpha- 42.2 72 0.0025 32.3 8.6 68 39-106 77-144 (529)
84 1fad_A Protein (FADD protein); 41.5 40 0.0014 26.6 5.2 70 62-135 17-86 (99)
85 1oyz_A Hypothetical protein YI 41.2 82 0.0028 28.4 8.1 55 37-106 191-245 (280)
86 2z6h_A Catenin beta-1, beta-ca 41.1 77 0.0026 32.9 8.8 70 38-108 14-83 (644)
87 1vf6_C Maguk P55 subfamily mem 40.6 17 0.00058 27.7 2.5 52 213-266 11-62 (72)
88 4fdd_A Transportin-1; heat rep 39.4 1.4E+02 0.0047 32.0 10.7 74 38-114 629-702 (852)
89 2o71_A Death domain-containing 39.1 48 0.0016 27.5 5.5 66 66-135 31-96 (115)
90 2of5_A Death domain-containing 38.0 53 0.0018 27.2 5.6 70 62-135 27-96 (114)
91 1w63_A Adapter-related protein 37.3 78 0.0027 33.0 8.1 77 22-107 91-167 (618)
92 3ul1_B Importin subunit alpha- 36.7 1.6E+02 0.0054 29.7 10.1 69 39-108 359-427 (510)
93 2vgl_A Adaptor protein complex 35.6 1E+02 0.0034 32.4 8.6 76 23-108 505-586 (621)
94 1qgr_A Protein (importin beta 35.3 3.1E+02 0.011 28.7 12.5 97 15-114 376-482 (876)
95 1b3u_A Protein (protein phosph 35.2 1E+02 0.0035 30.6 8.4 71 38-113 441-511 (588)
96 3ezq_B Protein FADD; apoptosis 34.6 80 0.0027 26.4 6.2 69 62-135 9-78 (122)
97 3ul1_B Importin subunit alpha- 32.8 99 0.0034 31.2 7.8 35 17-52 55-91 (510)
98 1xm9_A Plakophilin 1; armadill 31.6 98 0.0034 30.8 7.4 69 40-110 4-72 (457)
99 3tt9_A Plakophilin-2; cell adh 30.9 1.4E+02 0.0048 27.5 7.8 69 40-110 10-80 (233)
100 3tpo_A Importin subunit alpha- 30.5 2.3E+02 0.0079 28.5 10.1 69 39-108 378-446 (529)
101 4fdd_A Transportin-1; heat rep 29.9 2.9E+02 0.0099 29.4 11.3 97 16-114 370-474 (852)
102 2vgl_B AP-2 complex subunit be 29.3 2.5E+02 0.0086 28.8 10.3 65 11-75 245-319 (591)
103 2lo0_A Uncharacterized protein 29.1 39 0.0013 26.3 3.0 43 70-112 30-74 (75)
104 2of5_H Leucine-rich repeat and 27.9 56 0.0019 27.0 4.1 72 61-135 15-86 (118)
105 1wxp_A THO complex subunit 1; 26.8 93 0.0032 25.2 5.2 37 95-135 53-89 (110)
106 3b2a_A TON_1937, putative unch 26.5 1.6E+02 0.0054 28.1 7.3 69 36-109 148-216 (265)
107 1wjt_A Transcription elongatio 26.4 60 0.0021 26.5 3.9 21 94-114 67-87 (103)
108 2yqf_A Ankyrin-1; death domain 26.2 1.3E+02 0.0046 24.2 6.1 36 96-135 55-90 (111)
109 1oyz_A Hypothetical protein YI 24.8 3.7E+02 0.013 23.9 9.8 59 36-107 126-184 (280)
110 2vgl_B AP-2 complex subunit be 24.7 1.5E+02 0.0051 30.6 7.5 72 33-109 116-187 (591)
111 2vso_E Eukaryotic initiation f 23.0 3.5E+02 0.012 25.3 9.2 84 22-109 177-277 (284)
112 3ayh_A DNA-directed RNA polyme 22.8 1.3E+02 0.0045 25.5 5.6 55 21-75 55-121 (136)
113 1o5h_A Formiminotetrahydrofola 21.4 2.2E+02 0.0075 26.1 7.1 41 197-237 49-90 (214)
114 1te4_A Conserved protein MTH18 21.0 1.8E+02 0.0062 23.1 6.0 56 40-108 44-99 (131)
115 1u6g_C TIP120 protein, CAND1; 20.3 2.7E+02 0.0094 31.1 9.1 73 39-113 435-508 (1230)
No 1
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=100.00 E-value=1.1e-42 Score=316.71 Aligned_cols=142 Identities=25% Similarity=0.339 Sum_probs=136.5
Q ss_pred hHHHHHHhCCCCCCcChHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccch
Q 014390 3 TELVNSATSEKLADVDWTKNIEICELVARDQRHAKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGI 82 (425)
Q Consensus 3 ~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~F 82 (425)
+.+|+|||++.+.++||++|++|||+||.+++++++|+|+|+|||+|+|+++|++||+|||+||||||.+||.+|++++|
T Consensus 17 ~~~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~F 96 (163)
T 1x5b_A 17 EQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDF 96 (163)
T ss_dssp HHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHH
T ss_pred HHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCHhHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHcCCCCCCCCCCCC
Q 014390 83 LPILVKIVKKKSDLPVRERIFLLLDATQTSLGGASGKFPQYYTAYYELVSAGVQFPQRPRTIP 145 (425)
Q Consensus 83 L~~L~klv~~k~~~~Vk~KiL~Ll~~W~~~~~~~~~~~~~i~~~Y~~Lk~~Gv~FP~~~~~~~ 145 (425)
|++|++++++++++.|++||++||+.|+.+|++. ++|..|.++|++||++||+||..+..+.
T Consensus 97 l~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~-~~l~~i~~~Y~~Lk~~G~~FP~~~~~~~ 158 (163)
T 1x5b_A 97 ATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKD-PQFSLISATIKSMKEEGITFPPAGSQTS 158 (163)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTC-STTHHHHHHHHHHHTTTCCCCCCSSCCC
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcCC-cccHHHHHHHHHHHHcCCCCCCCCCCCC
Confidence 9999999998899999999999999999999765 5899999999999999999999987654
No 2
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=100.00 E-value=1.1e-42 Score=309.32 Aligned_cols=134 Identities=24% Similarity=0.361 Sum_probs=129.5
Q ss_pred hHHHHHHhCCCCCCcChHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccch
Q 014390 3 TELVNSATSEKLADVDWTKNIEICELVARDQRHAKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGI 82 (425)
Q Consensus 3 ~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~F 82 (425)
+++|+||||+.+.++||++|++|||+||+++.+|++|+|+|+|||+|+|+++|++||+|||+||||||.+||.+|++++|
T Consensus 7 d~~iekAT~~~l~~~dw~~ileicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~F 86 (140)
T 3ldz_A 7 DQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDF 86 (140)
T ss_dssp HHHHHHHTCTTSSSCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHH
T ss_pred HHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCHhHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHcCCCCC
Q 014390 83 LPILVKIVKKKSDLPVRERIFLLLDATQTSLGGASGKFPQYYTAYYELVSAGVQFP 138 (425)
Q Consensus 83 L~~L~klv~~k~~~~Vk~KiL~Ll~~W~~~~~~~~~~~~~i~~~Y~~Lk~~Gv~FP 138 (425)
+++|+++++ ++++.|++||+++|+.|+.+|++. ++|+.|.++|++||++||+||
T Consensus 87 l~el~~l~~-~~~~~Vk~kil~li~~W~~~f~~~-~~l~~i~~~Y~~Lk~~G~~FP 140 (140)
T 3ldz_A 87 ASEVSNVLN-KGHPKVCEKLKALMVEWTDEFKND-PQLSLISAMIKNLKEQGVTFP 140 (140)
T ss_dssp HHHHHHHHH-HSCHHHHHHHHHHHHHHHHHHTTC-GGGTHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHhc-cCCHHHHHHHHHHHHHHHHHhCCC-CCchHHHHHHHHHHHccCcCc
Confidence 999999996 478999999999999999999765 689999999999999999998
No 3
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=100.00 E-value=3.8e-42 Score=308.50 Aligned_cols=136 Identities=24% Similarity=0.315 Sum_probs=129.5
Q ss_pred hHHHHHHhCCCCCCcChHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccch
Q 014390 3 TELVNSATSEKLADVDWTKNIEICELVARDQRHAKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGI 82 (425)
Q Consensus 3 ~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~F 82 (425)
+.+|+|||++.+.++||++|++|||+||.++.+|++|+|+|+|||+|+|+++|++||+|||+||||||.+||.+|++++|
T Consensus 3 ~~~iekATs~~l~~~dw~~~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~F 82 (148)
T 1mhq_A 3 ELWLNKATDPSMSEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRF 82 (148)
T ss_dssp HHHHHHHHCTTCSSCCHHHHHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHH
T ss_pred HHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcC-----CCHhHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHcCCCCCCCCC
Q 014390 83 LPILVKIVKKK-----SDLPVRERIFLLLDATQTSLGGASGKFPQYYTAYYELVSAGVQFPQRPR 142 (425)
Q Consensus 83 L~~L~klv~~k-----~~~~Vk~KiL~Ll~~W~~~~~~~~~~~~~i~~~Y~~Lk~~Gv~FP~~~~ 142 (425)
|++|+++++++ ++..|++||++||+.|+.+|+ +.|.|.++|++|+++||.||..+.
T Consensus 83 l~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~----~~p~i~~~y~~Lk~~G~~Fp~~~~ 143 (148)
T 1mhq_A 83 LNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFP----EDIKIRDAYQMLKKQGIIKQDPKL 143 (148)
T ss_dssp HHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHTTSSCSCCCC
T ss_pred HHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcC----CCchHHHHHHHHHHcCCCCCCCCC
Confidence 99999999863 688999999999999999994 457899999999999999998764
No 4
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=100.00 E-value=8e-41 Score=302.59 Aligned_cols=137 Identities=26% Similarity=0.478 Sum_probs=128.9
Q ss_pred hhHHHHHHhCCCCCCcChHHHHHHHHHHhcCCccHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHhcchhhhhHhhccc
Q 014390 2 ATELVNSATSEKLADVDWTKNIEICELVARDQRHAKDVIKAIKKRLG-SKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDT 80 (425)
Q Consensus 2 a~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeAvraIrKRL~-~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~ 80 (425)
.+.+|+|||++.+.++||++|++|||+||.+++++++|+|+|+|||+ ++|+++|++||+|||+||||||.+||.+|+++
T Consensus 17 ~~~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~ 96 (157)
T 1elk_A 17 VGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQ 96 (157)
T ss_dssp HHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhH
Confidence 36799999999999999999999999999999999999999999998 59999999999999999999999999999999
Q ss_pred chHHH-HHHHhhcC--CCHhHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHcCCCCCC
Q 014390 81 GILPI-LVKIVKKK--SDLPVRERIFLLLDATQTSLGGASGKFPQYYTAYYELVSAGVQFPQ 139 (425)
Q Consensus 81 ~FL~~-L~klv~~k--~~~~Vk~KiL~Ll~~W~~~~~~~~~~~~~i~~~Y~~Lk~~Gv~FP~ 139 (425)
+||++ |++++.++ ++..||+||+++|+.|+.+|++. +++..|.++|++||++||+||.
T Consensus 97 ~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~~~-p~l~~i~~~Y~~Lk~~G~~FP~ 157 (157)
T 1elk_A 97 DFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRSS-PDLTGVVTIYEDLRRKGLEFPM 157 (157)
T ss_dssp HHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHcCCC-cchHHHHHHHHHHHHcCCCCCC
Confidence 99999 89999764 34579999999999999999764 6899999999999999999994
No 5
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=100.00 E-value=1.8e-40 Score=304.23 Aligned_cols=137 Identities=23% Similarity=0.320 Sum_probs=129.1
Q ss_pred hHHHHHHhCCCCCCcChHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccch
Q 014390 3 TELVNSATSEKLADVDWTKNIEICELVARDQRHAKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGI 82 (425)
Q Consensus 3 ~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~F 82 (425)
+.+|+|||++.+.++||++|++|||+||.+++++++|+|+|+|||+|+|+++|++||+|||+||||||.+||.+|++++|
T Consensus 15 ~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~F 94 (171)
T 1juq_A 15 ESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRF 94 (171)
T ss_dssp HHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHH
T ss_pred HHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcC-----CCHhHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHcCCCC--CCCCCC
Q 014390 83 LPILVKIVKKK-----SDLPVRERIFLLLDATQTSLGGASGKFPQYYTAYYELVSAGVQF--PQRPRT 143 (425)
Q Consensus 83 L~~L~klv~~k-----~~~~Vk~KiL~Ll~~W~~~~~~~~~~~~~i~~~Y~~Lk~~Gv~F--P~~~~~ 143 (425)
|++|+++++++ ++..||+||++||+.|+.+|+ +.++|.++|++||++||.| |..+.+
T Consensus 95 l~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~----~~~~i~~~y~~Lk~~G~~f~~P~~~~~ 158 (171)
T 1juq_A 95 LNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALP----EEAKIKDAYHMLKRQGIVQSDPPIPVD 158 (171)
T ss_dssp HHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHTTSCSSCCCBCCC
T ss_pred HHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcC----CCcHHHHHHHHHHHCCCCCCCCCCCcc
Confidence 99999999853 578899999999999999995 4678999999999999988 776644
No 6
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=100.00 E-value=1.5e-40 Score=298.44 Aligned_cols=130 Identities=23% Similarity=0.295 Sum_probs=124.5
Q ss_pred hHHHHHHhCCCCCCcChHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccch
Q 014390 3 TELVNSATSEKLADVDWTKNIEICELVARDQRHAKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGI 82 (425)
Q Consensus 3 ~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~F 82 (425)
+.+|+||||+.+.++||++|++|||+||.++++|++|+|+|+|||+|+||++|++||+|||+||||||.+||.+|++++|
T Consensus 13 ~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~F 92 (149)
T 3g2s_A 13 EARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRF 92 (149)
T ss_dssp HHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHH
T ss_pred HHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcC-----CCHhHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHcCCC
Q 014390 83 LPILVKIVKKK-----SDLPVRERIFLLLDATQTSLGGASGKFPQYYTAYYELVSAGVQ 136 (425)
Q Consensus 83 L~~L~klv~~k-----~~~~Vk~KiL~Ll~~W~~~~~~~~~~~~~i~~~Y~~Lk~~Gv~ 136 (425)
+++|+++++++ +++.||+||++||+.|+.+|+ +.|+|.++|++||++||.
T Consensus 93 l~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~----~~p~i~~~Y~~Lk~~Giv 147 (149)
T 3g2s_A 93 LNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLP----EEVKIAEAYQMLKKQGIV 147 (149)
T ss_dssp HHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhC----CCchHHHHHHHHHHCcCc
Confidence 99999999864 688899999999999999994 468899999999999983
No 7
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=100.00 E-value=1.7e-39 Score=309.85 Aligned_cols=139 Identities=27% Similarity=0.516 Sum_probs=133.7
Q ss_pred hHHHHHHhCCCCCCcChHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccch
Q 014390 3 TELVNSATSEKLADVDWTKNIEICELVARDQRHAKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGI 82 (425)
Q Consensus 3 ~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~F 82 (425)
+++|+|||++.|.++||++||+|||+||.++++|++|+|+|+|||+++|+++|++||+|||+||||||.+||.+|++++|
T Consensus 10 ~~~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~f 89 (226)
T 3zyq_A 10 ERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQT 89 (226)
T ss_dssp HHHHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHH
T ss_pred HHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCHhHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHcCCCCCCCCC
Q 014390 83 LPILVKIVKKKSDLPVRERIFLLLDATQTSLGGASGKFPQYYTAYYELVSAGVQFPQRPR 142 (425)
Q Consensus 83 L~~L~klv~~k~~~~Vk~KiL~Ll~~W~~~~~~~~~~~~~i~~~Y~~Lk~~Gv~FP~~~~ 142 (425)
|++|++|+++.+++.|++|||+||+.|+.+|.+. ++|+.|.++|++||++||+||..+.
T Consensus 90 l~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~-~~l~~i~~~Y~~Lk~~G~~FP~~~~ 148 (226)
T 3zyq_A 90 MEELKDLLKRQVEVNVRNKILYLIQAWAHAFRNE-PKYKVVQDTYQIMKVEGHVFPEFKE 148 (226)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTC-GGGHHHHHHHHHHHHHTCCCCCCCG
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCC-cchHHHHHHHHHHHhcCCCcccchh
Confidence 9999999998899999999999999999999764 6899999999999999999998754
No 8
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=100.00 E-value=2.8e-39 Score=290.96 Aligned_cols=132 Identities=24% Similarity=0.459 Sum_probs=123.9
Q ss_pred hhHHHHHHhCCCCCCcChHHHHHHHHHHhcCCccHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHhcchhhhhHhhccc
Q 014390 2 ATELVNSATSEKLADVDWTKNIEICELVARDQRHAKDVIKAIKKRLGS-KNTNVQLYAVMLLEMLMNNIGDHIHKLVIDT 80 (425)
Q Consensus 2 a~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeAvraIrKRL~~-~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~ 80 (425)
++.+|+|||++.+.++||++|++|||+||.++++|++|+|+|+|||++ +|+++|++||+|||+||||||.+||.+|+++
T Consensus 17 ~~~~IekATs~~l~~~Dw~~ileicD~In~~~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask 96 (152)
T 3rru_A 17 VGHLIEKATFAGVQTEDWGQFMHICDIINTTQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKK 96 (152)
T ss_dssp HHHHHHHHTCSSCCSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSH
T ss_pred HHHHHHHHcCCCCCCccHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhh
Confidence 578999999999999999999999999999999999999999999985 6999999999999999999999999999999
Q ss_pred chHHH-HHHHhhcC--CCHhHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHcC
Q 014390 81 GILPI-LVKIVKKK--SDLPVRERIFLLLDATQTSLGGASGKFPQYYTAYYELVSAG 134 (425)
Q Consensus 81 ~FL~~-L~klv~~k--~~~~Vk~KiL~Ll~~W~~~~~~~~~~~~~i~~~Y~~Lk~~G 134 (425)
+|+++ |+++++++ ++..||+||++||+.|+.+|++. +++++|.++|++|+++|
T Consensus 97 ~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~~-p~l~~i~~~Y~~Lk~~G 152 (152)
T 3rru_A 97 EFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFPGG-VDVSEVKEVYLDLVKKG 152 (152)
T ss_dssp HHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCSSS-CCCHHHHHHHHHHHHC-
T ss_pred HhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHCc
Confidence 99997 99999875 45579999999999999999765 58999999999999998
No 9
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=100.00 E-value=3.9e-37 Score=292.16 Aligned_cols=140 Identities=21% Similarity=0.368 Sum_probs=134.2
Q ss_pred hhHHHHHHhCCCCCCcChHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccc
Q 014390 2 ATELVNSATSEKLADVDWTKNIEICELVARDQRHAKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTG 81 (425)
Q Consensus 2 a~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~ 81 (425)
.+.+|++||++.+.++||++|++|||+||.+++++++|+|+|+|||+++|+++|++||+|||+||+|||.+||.+|++++
T Consensus 6 ~~~~ie~AT~~~~~~~dw~~~leicd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~ 85 (220)
T 1dvp_A 6 FCKNLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKE 85 (220)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcCCCHhHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHcCCCCCCCCC
Q 014390 82 ILPILVKIVKKKSDLPVRERIFLLLDATQTSLGGASGKFPQYYTAYYELVSAGVQFPQRPR 142 (425)
Q Consensus 82 FL~~L~klv~~k~~~~Vk~KiL~Ll~~W~~~~~~~~~~~~~i~~~Y~~Lk~~Gv~FP~~~~ 142 (425)
||++|++++++.++..|++||+++|+.|+.+|++. ++|..|.++|+.|+.+|+.||....
T Consensus 86 fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~-~~~~~i~~~y~~Lk~~G~~FP~~~e 145 (220)
T 1dvp_A 86 NCEMFSSFLESTPHENVRQKMLELVQTWAYAFRSS-DKYQAIKDTMTILKAKGHTFPELRE 145 (220)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTTC-SSCCHHHHHHHHHHHTTCCCCCCCC
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHhhcCcccccccc
Confidence 99999999998888999999999999999999765 6899999999999999999998754
No 10
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=99.85 E-value=7.9e-22 Score=174.73 Aligned_cols=123 Identities=15% Similarity=0.261 Sum_probs=86.5
Q ss_pred CCCcccccccccccccCCCCCCCccCCCCCC------CC-----CCChHHHHHHHHHHHHHHHHHHhhCCCCCCCC-cch
Q 014390 149 PSSDANKKVTLNGELASSRNEGVTLAQQPEP------QI-----VPESSIIQKASNALEVLKDVLDAVGTQNPEGA-KDE 216 (425)
Q Consensus 149 ~t~~~~~~~~~~~~~~S~~~~~~~~A~~~e~------q~-----~~~~~ele~~~~~~~LL~EML~~~~p~~~~~~-d~E 216 (425)
.|..+.++..++++++|++|+|++.||..-. +. .....+|++++++++||+|||++++|++.... ++|
T Consensus 3 ~f~~e~ks~~L~~Lirs~~P~DL~~AN~LiK~m~~~d~~r~e~~~k~~~eLe~v~~n~~LL~EML~~~~p~~~~~~~d~E 82 (140)
T 1o3x_A 3 IFEDEEKSKMLARLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSED 82 (140)
T ss_dssp ------------------------CCCSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCHHHHH
T ss_pred ccccHHHHHHHHHHHhcCChhhHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccHH
Confidence 3556677888899999999999999998621 10 11345899999999999999999999998777 889
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc-CcHHHHHHHHHhhHHHHHHHHHHHhhhhcCcc
Q 014390 217 FTLDLVEQCSFQKQRVMHLVMTS-RDEKVVSQAIDLNEQLQNVLARHDVLLSERST 271 (425)
Q Consensus 217 li~EL~~~Cr~~q~rI~~lI~~v-~dEelL~~LL~~NDeL~~aL~rYe~l~~g~~~ 271 (425)
+++|||.+|++||++|++||+.+ +||++|+++|.+||+|+++|.+|+++.+|...
T Consensus 83 ll~eL~~~ck~~qp~i~~li~e~~ddee~l~elL~~ND~ln~vl~kY~~~~~g~~~ 138 (140)
T 1o3x_A 83 LMKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEEV 138 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHhhHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999864 78999999999999999999999999999754
No 11
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=99.85 E-value=2e-21 Score=163.92 Aligned_cols=89 Identities=24% Similarity=0.357 Sum_probs=83.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHhhHHHHHHHHHHH
Q 014390 184 ESSIIQKASNALEVLKDVLDAVGTQNPEGAKDEFTLDLVEQCSFQKQRVMHLVMTSRDEKVVSQAIDLNEQLQNVLARHD 263 (425)
Q Consensus 184 ~~~ele~~~~~~~LL~EML~~~~p~~~~~~d~Eli~EL~~~Cr~~q~rI~~lI~~v~dEelL~~LL~~NDeL~~aL~rYe 263 (425)
..++|++++++++||+|||++++|+++...++|+++|||.+||+||+||++||++++||++|+++|++||+|+++|.+|+
T Consensus 11 ~~~el~~v~~n~~lL~EML~~~~p~~~~~~~~el~~eL~~~c~~~qp~i~~li~~~~dee~l~~lL~~ND~L~~vl~ry~ 90 (103)
T 1wrd_A 11 LRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQIANEQLTEELLIVNDNLNNVFLRHE 90 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHhhHHHHHHHHHHH
Confidence 45789999999999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCccc
Q 014390 264 VLLSERSTS 272 (425)
Q Consensus 264 ~l~~g~~~~ 272 (425)
++.+|+...
T Consensus 91 ~~~~~~~~~ 99 (103)
T 1wrd_A 91 RFERFRTGQ 99 (103)
T ss_dssp HHHHHHCC-
T ss_pred HHhcCCCCC
Confidence 999997543
No 12
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=99.83 E-value=6.5e-22 Score=178.21 Aligned_cols=125 Identities=17% Similarity=0.286 Sum_probs=98.7
Q ss_pred CCCcccccccccccccCCCCCCCccCCCC------CCC-----CCCChHHHHHHHHHHHHHHHHHHhhCCCCCCCC-cch
Q 014390 149 PSSDANKKVTLNGELASSRNEGVTLAQQP------EPQ-----IVPESSIIQKASNALEVLKDVLDAVGTQNPEGA-KDE 216 (425)
Q Consensus 149 ~t~~~~~~~~~~~~~~S~~~~~~~~A~~~------e~q-----~~~~~~ele~~~~~~~LL~EML~~~~p~~~~~~-d~E 216 (425)
.|..+.++..++++++|++|+|++.||++ +++ .....++|++++++++||+|||++++|++.... ++|
T Consensus 12 ~f~~eeks~~L~~Lirs~~PeDL~~AN~LiK~m~~~d~~r~e~~~k~~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~E 91 (158)
T 1naf_A 12 IFEDEEKSKMLARLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSED 91 (158)
T ss_dssp ---CCHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCTT
T ss_pred ccCcHHHHHHHHHHHhcCChhhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHH
Confidence 46677788888999999999999999864 111 111346899999999999999999999988777 899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-cCcHHHHHHHHHhhHHHHHHHHHHHhhhhcCcccc
Q 014390 217 FTLDLVEQCSFQKQRVMHLVMT-SRDEKVVSQAIDLNEQLQNVLARHDVLLSERSTST 273 (425)
Q Consensus 217 li~EL~~~Cr~~q~rI~~lI~~-v~dEelL~~LL~~NDeL~~aL~rYe~l~~g~~~~~ 273 (425)
+++|||++||+||++|++||+. .+||++|+++|.+||+|+++|.+|+++.+|+...+
T Consensus 92 ll~eL~~~Ck~~qp~i~~Li~e~~ddee~L~elL~~ND~Ln~vl~kY~~~~~g~~~~~ 149 (158)
T 1naf_A 92 LMKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEEVNG 149 (158)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCC
Confidence 9999999999999999999985 47899999999999999999999999999976544
No 13
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=99.83 E-value=6.3e-22 Score=182.77 Aligned_cols=126 Identities=16% Similarity=0.266 Sum_probs=105.2
Q ss_pred CCCcccccccccccccCCCCCCCccCCCCC------CC-----CCCChHHHHHHHHHHHHHHHHHHhhCCCCCCCC-cch
Q 014390 149 PSSDANKKVTLNGELASSRNEGVTLAQQPE------PQ-----IVPESSIIQKASNALEVLKDVLDAVGTQNPEGA-KDE 216 (425)
Q Consensus 149 ~t~~~~~~~~~~~~~~S~~~~~~~~A~~~e------~q-----~~~~~~ele~~~~~~~LL~EML~~~~p~~~~~~-d~E 216 (425)
.|.++.++..++++++|++|+|++.||+.- ++ ...+..+|++++++++||+|||++++|++.... ++|
T Consensus 28 if~deekSa~L~eLirs~~PeDL~~AN~LiK~m~~~d~~r~e~~~k~~~eLe~V~~nv~LL~EML~~~~pg~~~~~~d~E 107 (186)
T 1oxz_A 28 IFEDEEKSKMLARLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSED 107 (186)
T ss_dssp ---CTTHHHHHHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCTTTTHH
T ss_pred cCCcHHHHHHHHHHhcCCChhhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccHH
Confidence 466777888889999999999999888641 11 111346899999999999999999999998877 899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-cCcHHHHHHHHHhhHHHHHHHHHHHhhhhcCccccc
Q 014390 217 FTLDLVEQCSFQKQRVMHLVMT-SRDEKVVSQAIDLNEQLQNVLARHDVLLSERSTSTA 274 (425)
Q Consensus 217 li~EL~~~Cr~~q~rI~~lI~~-v~dEelL~~LL~~NDeL~~aL~rYe~l~~g~~~~~~ 274 (425)
+++|||.+||+||++|++||+. .+||++|+++|++||+|+++|.+|+++.+|+...+.
T Consensus 108 ll~eL~~~Ck~~qp~i~~Li~e~~ddee~L~elL~~ND~Ln~vl~kY~~~~~g~~~~~~ 166 (186)
T 1oxz_A 108 LMKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEEVNGD 166 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHTTHHHHCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCcc
Confidence 9999999999999999999985 578999999999999999999999999999866554
No 14
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G
Probab=99.78 E-value=1.1e-19 Score=155.06 Aligned_cols=90 Identities=11% Similarity=0.326 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhcc-CcHHHHHHHHHhhHHHHHHHHHHH
Q 014390 185 SSIIQKASNALEVLKDVLDAVGTQNPEGAKDEFTLDLVEQCSFQKQRVMHLVMTS-RDEKVVSQAIDLNEQLQNVLARHD 263 (425)
Q Consensus 185 ~~ele~~~~~~~LL~EML~~~~p~~~~~~d~Eli~EL~~~Cr~~q~rI~~lI~~v-~dEelL~~LL~~NDeL~~aL~rYe 263 (425)
.++|++++++++||+|||+++.|+++...+.|+++|||.+|++||++|++||+.+ +||++|++||++||+|+++|.+|+
T Consensus 7 ~~eLe~V~~n~~LL~EML~~~~pg~~~~~d~ell~ELy~~ck~~qp~i~kL~~e~~ddde~l~elL~~ND~ln~vi~rY~ 86 (111)
T 1wr6_A 7 LHTLEEVNNNVRLLSEMLLHYSQEDSSDGDRELMKELFDQCENKRRTLFKLASETEDNDNSLGDILQASDNLSRVINSYK 86 (111)
T ss_dssp CCCHHHHHHHHHHHHHHTTTCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCSSHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHhHHHHHHHHHHH
Confidence 3579999999999999999999999878888999999999999999999999865 589999999999999999999999
Q ss_pred hhhhcCccccc
Q 014390 264 VLLSERSTSTA 274 (425)
Q Consensus 264 ~l~~g~~~~~~ 274 (425)
++.+|+...+.
T Consensus 87 ~~~~g~~~~~~ 97 (111)
T 1wr6_A 87 TIIEGQVINGE 97 (111)
T ss_dssp HTTTCC-----
T ss_pred HHhcCCCCCCc
Confidence 99999876543
No 15
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=98.01 E-value=2.9e-05 Score=68.47 Aligned_cols=105 Identities=22% Similarity=0.292 Sum_probs=80.1
Q ss_pred hHHHHHHhCCCCCCcChHHHHHHHHHHhcCCc-cHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccc
Q 014390 3 TELVNSATSEKLADVDWTKNIEICELVARDQR-HAKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTG 81 (425)
Q Consensus 3 ~~lIekATse~l~~~Dw~~ileICD~In~~~~-~akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~ 81 (425)
+.+|.+||+..-..+--.+.-||+++...... ...+.+..|-|||+++++++.+-||.||+.|++|....|..++-+.-
T Consensus 13 ~~~V~~ATs~d~~~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~ 92 (140)
T 1vdy_A 13 SRMIDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNS 92 (140)
T ss_dssp HHHHHHTTCSCSSCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhH
Confidence 35799999965555555578899999887754 46999999999999999999999999999999999999988886554
Q ss_pred hHHHHHHHhhcC--CC--------HhHHHHHHHHHHHH
Q 014390 82 ILPILVKIVKKK--SD--------LPVRERIFLLLDAT 109 (425)
Q Consensus 82 FL~~L~klv~~k--~~--------~~Vk~KiL~Ll~~W 109 (425)
. .|+.+..=+ .+ ..||++..+++..-
T Consensus 93 ~--~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll 128 (140)
T 1vdy_A 93 V--AVRNLFHYKGHPDPLKGDALNKAVRETAHETISAI 128 (140)
T ss_dssp H--HHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 3 233333211 12 34899988888643
No 16
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=97.90 E-value=0.00012 Score=64.77 Aligned_cols=113 Identities=14% Similarity=0.148 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhH
Q 014390 19 WTKNIEICELVARDQRHAKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPV 98 (425)
Q Consensus 19 w~~ileICD~In~~~~~akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~V 98 (425)
-..|-.+....-.....++..+.+|.++|+.-+|..-|.+|-|+|..++|||..|+..++. .+.+.+..... ..+..+
T Consensus 24 k~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~-~l~~~f~~~~~-~~d~~~ 101 (144)
T 1sz9_A 24 RPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSR-NLFNLYKRTYL-LVDNTT 101 (144)
T ss_dssp HHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHT-THHHHHHHHHH-TSCHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHH-HHHHHHHHHHH-hCCHHH
Confidence 3344444444445556799999999999998999999999999999999999999876664 23333333332 368899
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcc--hHHHHHHHHHHc
Q 014390 99 RERIFLLLDATQTSLGGASGKFP--QYYTAYYELVSA 133 (425)
Q Consensus 99 k~KiL~Ll~~W~~~~~~~~~~~~--~i~~~Y~~Lk~~ 133 (425)
|.|+..|+..|...+-+..+-|+ .+...-+.|.+.
T Consensus 102 r~k~~rL~~~W~~~~~~~~~vF~~~~l~~i~~~l~~a 138 (144)
T 1sz9_A 102 RTKLINMFKLWLNPNDTGLPLFEGSALEKIEQFLIKA 138 (144)
T ss_dssp HHHHHHHHHHHTSGGGCSSCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcccCCCCCCCHHHHHHHHHHHHhh
Confidence 99999999999977532212233 334444455444
No 17
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=97.63 E-value=0.00038 Score=61.88 Aligned_cols=106 Identities=23% Similarity=0.200 Sum_probs=80.0
Q ss_pred hhHHHHHHhCCCCCCcChHHHHHHHHHHhcCCccHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHhcchhhhhHhhcc
Q 014390 2 ATELVNSATSEKLADVDWTKNIEICELVARDQRHAKDVIKAIKKRLGS--KNTNVQLYAVMLLEMLMNNIGDHIHKLVID 79 (425)
Q Consensus 2 a~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeAvraIrKRL~~--~n~~vql~AL~LLe~~VkNCG~~Fh~eIas 79 (425)
++..|..||+...-.|.-..+-+|++.-.. .....+.+..|.|||.. ++..+.+-||.|||.|++|+.++|-..+.+
T Consensus 24 ~E~~VreAT~~d~wGP~~~~m~eIa~~T~~-~~~~~eIm~~l~kRL~d~~k~WR~vyKaL~lleyLl~nGse~vv~~~r~ 102 (148)
T 1inz_A 24 AEIKVREATSNDPWGPSSSLMSEIADLTYN-VVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQQCKE 102 (148)
T ss_dssp HHHHHHHHSCCCSCCCCSCHHHHHHHHHTS-SHHHHHHHHHHHHGGGCCSSCTHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcCHHHHHHHHHHhCC-HhhHHHHHHHHHHHHccCCcchhHhhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 467899999988888888888899987665 46788999999999965 589999999999999999999888776654
Q ss_pred cch-HHHHHHH--hh-cC--CCHhHHHHHHHHHHH
Q 014390 80 TGI-LPILVKI--VK-KK--SDLPVRERIFLLLDA 108 (425)
Q Consensus 80 ~~F-L~~L~kl--v~-~k--~~~~Vk~KiL~Ll~~ 108 (425)
.-+ +..|... +. +. ....||+|+-+++.-
T Consensus 103 ~~~~I~~L~~F~y~d~~g~D~G~nVR~kAk~l~~L 137 (148)
T 1inz_A 103 NMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVAL 137 (148)
T ss_dssp THHHHHHHHHCCCCCSSCCCCCHHHHHHHHHHHHH
T ss_pred hHHHHHhhcceeeeCCCCcCchHHHHHHHHHHHHH
Confidence 433 2333331 11 11 224689988888754
No 18
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=97.61 E-value=0.0005 Score=62.78 Aligned_cols=104 Identities=15% Similarity=0.134 Sum_probs=77.3
Q ss_pred hhHHHHHHhCCCCCCcChHHHHHHHHHHhcCCccHHHHHHHHHHHh-C--CCCHHHHHHHHHHHHHHHhcchhhhhHhhc
Q 014390 2 ATELVNSATSEKLADVDWTKNIEICELVARDQRHAKDVIKAIKKRL-G--SKNTNVQLYAVMLLEMLMNNIGDHIHKLVI 78 (425)
Q Consensus 2 a~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeAvraIrKRL-~--~~n~~vql~AL~LLe~~VkNCG~~Fh~eIa 78 (425)
++.+|..||+...-.|.-..+-+||+.-... ....+.+..|.||| + .++....+-||+|||.|++|+.++|-..+
T Consensus 35 ~E~kVreATnnd~wGPs~~~m~eIa~~T~~~-~~~~~Im~~L~kRl~~~~~k~WR~vyKaL~LLeYLl~nGse~vv~~~- 112 (176)
T 1xgw_A 35 IESKVREATNDDPWGPSGQLMGEIAKATFMY-EQFPELMNMLWSRMLKDNKKNWRRVYKSLLLLAYLIRNGSERVVTSA- 112 (176)
T ss_dssp HHHHHHHHTCSCSSCCCHHHHHHHHHHTTCT-TTHHHHHHHHHHHHHSSCTTCHHHHHHHHHHHHHHHHHSCHHHHHHH-
T ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhCCHHHHHHH-
Confidence 4568999999877777777888888765543 56789999999996 4 57999999999999999999998887766
Q ss_pred ccchHHHHHHHhhcC------CC--HhHHHHHHHHHHH
Q 014390 79 DTGILPILVKIVKKK------SD--LPVRERIFLLLDA 108 (425)
Q Consensus 79 s~~FL~~L~klv~~k------~~--~~Vk~KiL~Ll~~ 108 (425)
++.+..|..|-.=. .| ..||+|+-+++..
T Consensus 113 -r~~i~~I~~L~~F~y~D~~G~D~G~~VR~kAk~i~~L 149 (176)
T 1xgw_A 113 -REHIYDLRSLENYHFVDEHGKDQGINIRQKVKELVEF 149 (176)
T ss_dssp -HHTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHH
T ss_pred -HHhHHHHHhhccCeeECCCCCChHHHHHHHHHHHHHH
Confidence 34443333332211 12 3499998888753
No 19
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=97.37 E-value=0.00054 Score=60.59 Aligned_cols=104 Identities=22% Similarity=0.194 Sum_probs=76.5
Q ss_pred hhHHHHHHhCCCCCCcChHHHHHHHHHHhcCCccHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHhcchhhhhHhhcc
Q 014390 2 ATELVNSATSEKLADVDWTKNIEICELVARDQRHAKDVIKAIKKRLGS--KNTNVQLYAVMLLEMLMNNIGDHIHKLVID 79 (425)
Q Consensus 2 a~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeAvraIrKRL~~--~n~~vql~AL~LLe~~VkNCG~~Fh~eIas 79 (425)
++..|..||+...-.|.-..+-+|++.-.. .....+.+..|.|||.. ++..+.+-||+|||.|++|+.++|-..+.+
T Consensus 6 ~E~~VreAT~~d~wGP~~~~m~eIa~~T~~-~~~~~~Im~~l~kRL~d~~k~Wr~vyKaL~lleyLl~nGse~vv~~~~~ 84 (144)
T 1eyh_A 6 AEIKVREATSNDPWGPSSSLMSEIADLTYN-VVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQQCKE 84 (144)
T ss_dssp HHHHHHHHTCSSSSCCCHHHHHHHHHHTTS-HHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHhCC-HhhHHHHHHHHHHHHccCCcchHHHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 467899999988778888888888886543 35678999999999975 488999999999999999998887665543
Q ss_pred cchHHHHHHHhhc-------CC--CHhHHHHHHHHHHHH
Q 014390 80 TGILPILVKIVKK-------KS--DLPVRERIFLLLDAT 109 (425)
Q Consensus 80 ~~FL~~L~klv~~-------k~--~~~Vk~KiL~Ll~~W 109 (425)
.-+ .| +.+.. .. ...||+|+-+++.--
T Consensus 85 ~~~--~i-~~L~~F~y~d~~g~D~G~~VR~kak~l~~Ll 120 (144)
T 1eyh_A 85 NMY--AV-QTLKDFQYVDRDGKDQGVNVREKAKQLVALL 120 (144)
T ss_dssp THH--HH-HGGGGCCCBCTTSCBCHHHHHHHHHHHHHHH
T ss_pred hhH--HH-hhhccceeeCCCccchHHHHHHHHHHHHHHH
Confidence 322 12 22221 11 125899888877543
No 20
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=97.24 E-value=0.0019 Score=57.46 Aligned_cols=105 Identities=16% Similarity=0.131 Sum_probs=75.5
Q ss_pred hhHHHHHHhCCCCCCcChHHHHHHHHHHhcCCccHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHhcchhhhhHhhc
Q 014390 2 ATELVNSATSEKLADVDWTKNIEICELVARDQRHAKDVIKAIKKRLGS---KNTNVQLYAVMLLEMLMNNIGDHIHKLVI 78 (425)
Q Consensus 2 a~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeAvraIrKRL~~---~n~~vql~AL~LLe~~VkNCG~~Fh~eIa 78 (425)
++..|..||+...-.|.-..+-+|++.-- +.....+.+..|.|||.. ++....+-||+|||.|++|+.+.|-..+.
T Consensus 12 ~E~kVreAT~nd~wGp~~~~m~eIa~~T~-~~~~~~eIm~~l~kRL~d~~~k~WR~vyKaL~lLeyLl~nGse~vv~~~r 90 (150)
T 3onk_A 12 MEGKVREATNNEPWGASSTLMDQISQGTY-NFREREEILSMIFRRFTEKAGSEWRQIYKALQLLDYLIKHGSERFIDDTR 90 (150)
T ss_dssp HHHHHHHHTSSCSSCCCHHHHHHHHHHTT-SHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcCHHHHHHHHHHhC-CHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 46789999997666777777777776533 235578999999999953 48999999999999999999998887764
Q ss_pred ccchHHHHHHHhhc-CCC-------HhHHHHHHHHHHHH
Q 014390 79 DTGILPILVKIVKK-KSD-------LPVRERIFLLLDAT 109 (425)
Q Consensus 79 s~~FL~~L~klv~~-k~~-------~~Vk~KiL~Ll~~W 109 (425)
+.-+ .|..|-.= ..| ..||+|+-+++.-.
T Consensus 91 ~~~~--~i~~L~~F~~~d~~G~D~G~~VR~kak~l~~LL 127 (150)
T 3onk_A 91 NSIN--LIRILETFHYIDSQGRDQGINVRTRVKALIELL 127 (150)
T ss_dssp TTHH--HHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHhhhcccccCCCCCchHHHHHHHHHHHHHHH
Confidence 4332 23322221 122 35999988887644
No 21
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.00046 Score=56.06 Aligned_cols=76 Identities=17% Similarity=0.238 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHhhCCCC-C-CCCcchHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHhhHHHHHHHHHHHhhhhcC
Q 014390 192 SNALEVLKDVLDAVGTQN-P-EGAKDEFTLDLVEQCSFQKQRVMHLVMTSRDEKVVSQAIDLNEQLQNVLARHDVLLSER 269 (425)
Q Consensus 192 ~~~~~LL~EML~~~~p~~-~-~~~d~Eli~EL~~~Cr~~q~rI~~lI~~v~dEelL~~LL~~NDeL~~aL~rYe~l~~g~ 269 (425)
..+++.|-++|...+|.. - +..+++.+++||.+|-.+|++|.++|.....-. .+|+.+|+.|.++..-|+.+...+
T Consensus 9 ~~~vd~Ll~~L~~~~p~~~~~~~~~d~eiq~LY~~v~~lRPkL~~li~kysqKk--~eL~~Ln~kl~~a~~~Yd~lle~s 86 (88)
T 2pjw_H 9 KTTIDQLHNSLNAASKTGNSNEVLQDPHIGDMYGSVTPLRPQVTRMLGKYAKEK--EDMLSLRQVLANAERSYNQLMDRA 86 (88)
T ss_dssp HHHHHHHHHHHHHHHTTCCTHHHHSCHHHHHHHHHHTTHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHhcCCCCCchhhhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788888999887733 2 467899999999999999999999998543222 268999999999999999987653
No 22
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.0087 Score=48.85 Aligned_cols=57 Identities=18% Similarity=0.217 Sum_probs=48.7
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHhhHHHHHHHHHHHhhhhcC
Q 014390 211 EGAKDEFTLDLVEQCSFQKQRVMHLVMTSRDEKVVSQAIDLNEQLQNVLARHDVLLSER 269 (425)
Q Consensus 211 ~~~d~Eli~EL~~~Cr~~q~rI~~lI~~v~dEelL~~LL~~NDeL~~aL~rYe~l~~g~ 269 (425)
+..+++-+++||.++-.+|+|+.+.|.... .=...|+++|+.|..|..-||++...+
T Consensus 28 ~i~~d~~LqeLy~kv~~lRPKL~r~l~~~~--~K~~~L~~mn~Kls~a~rlYD~lLE~~ 84 (91)
T 2pjw_V 28 EILEDSKLQNLAQRVFASKARLNYALNDKA--QKYNTLIEMNGKISEIMNIYDRLLEQQ 84 (91)
T ss_dssp TTTTTTHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477899999999999999999999987432 223478999999999999999998765
No 23
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=96.35 E-value=0.0095 Score=51.08 Aligned_cols=91 Identities=10% Similarity=0.078 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhHH
Q 014390 20 TKNIEICELVARDQRHAKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVR 99 (425)
Q Consensus 20 ~~ileICD~In~~~~~akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk 99 (425)
..|-.+...+-.....+++.+..|.++|+.-.+...+..|-|++.+++||+.+....+. ..|-..|..++..-.++.++
T Consensus 22 ~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~-~~f~~~l~~~~~~~~~~~~~ 100 (132)
T 4flb_A 22 ESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFR-ESFADVLPEAAALVKDPSVS 100 (132)
T ss_dssp HHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHH-HHHHTTHHHHHHTTCSTTTH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHH-HHHHHHHHHHHHHhCCHHHH
Confidence 34555555555555679999999999998888889999999999999999776543332 23444455555444577899
Q ss_pred HHHHHHHHHHHH
Q 014390 100 ERIFLLLDATQT 111 (425)
Q Consensus 100 ~KiL~Ll~~W~~ 111 (425)
+|+..+|..|.+
T Consensus 101 ~kl~~ll~iW~~ 112 (132)
T 4flb_A 101 KSVERIFKIWED 112 (132)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 999999999986
No 24
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=96.19 E-value=0.018 Score=50.60 Aligned_cols=89 Identities=8% Similarity=0.166 Sum_probs=67.0
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhH---hhcccchHHHHHHHhhc--CCCH
Q 014390 22 NIEICELVARDQRHAKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHK---LVIDTGILPILVKIVKK--KSDL 96 (425)
Q Consensus 22 ileICD~In~~~~~akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~---eIas~~FL~~L~klv~~--k~~~ 96 (425)
|-.|....-.....++..|..|.++|+.-.|..-|-+|-|+|..++|++..... .++ ..|...|..++.. +.++
T Consensus 26 I~~LT~~a~~~~~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~-~~F~~~L~~~f~~~~~~~~ 104 (145)
T 3d9j_A 26 MTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFA-PRFSNNIISTFQNLYRCPG 104 (145)
T ss_dssp HHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHH-HHHHHHHHHHHHHHTSSCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHH-HHHHHHHHHHHHHHHhCCH
Confidence 333444333444568999999999998778888899999999999999986532 222 3466777776653 4568
Q ss_pred hHHHHHHHHHHHHHH
Q 014390 97 PVRERIFLLLDATQT 111 (425)
Q Consensus 97 ~Vk~KiL~Ll~~W~~ 111 (425)
.+|.|+..|+..|..
T Consensus 105 ~~r~kl~rLl~iW~~ 119 (145)
T 3d9j_A 105 DDKSKIVRVLNLWQK 119 (145)
T ss_dssp GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC
Confidence 899999999999985
No 25
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=95.34 E-value=0.017 Score=49.49 Aligned_cols=89 Identities=16% Similarity=0.202 Sum_probs=62.5
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcc---hhhhhHhhcccchHHHHHHHhhcCCCHh
Q 014390 21 KNIEICELVARDQRHAKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNI---GDHIHKLVIDTGILPILVKIVKKKSDLP 97 (425)
Q Consensus 21 ~ileICD~In~~~~~akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNC---G~~Fh~eIas~~FL~~L~klv~~k~~~~ 97 (425)
.|-.+...+-.....+++.+.+|.++|+...+...+..|-|++.+++|| |..|-..+. ..|-.+...+....++.
T Consensus 22 sI~~~s~w~l~~~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~~~~~y~~~f~--~~l~~~~~~~~~~~~~~ 99 (135)
T 4fu3_A 22 SVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTREFE--SVLVDAFSHVAREADEG 99 (135)
T ss_dssp HHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTTTCSHHHHHHH--TTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCHHHHHHHH--HHHHHHHHHHHHcCCHH
Confidence 3555555555555679999999999998777778889999999999999 444554443 22322322222234566
Q ss_pred HHHHHHHHHHHHHH
Q 014390 98 VRERIFLLLDATQT 111 (425)
Q Consensus 98 Vk~KiL~Ll~~W~~ 111 (425)
+++|+..+|..|.+
T Consensus 100 ~k~kl~kll~iW~~ 113 (135)
T 4fu3_A 100 CKKPLERLLNIWQE 113 (135)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC
Confidence 89999999999986
No 26
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=93.74 E-value=0.27 Score=47.43 Aligned_cols=75 Identities=9% Similarity=0.045 Sum_probs=63.6
Q ss_pred hHHHHHHhCCCCCCcChHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhh
Q 014390 3 TELVNSATSEKLADVDWTKNIEICELVARDQRHAKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLV 77 (425)
Q Consensus 3 ~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eI 77 (425)
+..|-|||+.....|+-..+-+|.-.......+..+.+++|.+||+.+|+.+.+-||.++..|+..+.+.|-.++
T Consensus 30 ~~aV~KATs~~~~~Pk~Khv~~il~~T~~~~~~~~~~~~~L~~Rl~~~~w~v~~KaLivlH~llreG~~~~l~~~ 104 (271)
T 3zyl_A 30 SKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKSLITTHHLMVYGNERFIQYL 104 (271)
T ss_dssp HHHHHHHTCSSSSCCCHHHHHHHHHHHHSTTSCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHhcCCCCCCCCCHHHHHHHHHHHccCCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 457999999988888888888777777766667899999999999999999999999999999999876654444
No 27
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3
Probab=93.49 E-value=0.3 Score=47.67 Aligned_cols=76 Identities=12% Similarity=0.037 Sum_probs=65.2
Q ss_pred hHHHHHHhCCCCCCcChHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhc
Q 014390 3 TELVNSATSEKLADVDWTKNIEICELVARDQRHAKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVI 78 (425)
Q Consensus 3 ~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIa 78 (425)
+..|-|||+.....|+-.-+-+|............+.+++|.+|++..|+.|++-||.++.-|+.-+.+.|-.+++
T Consensus 25 ~kaV~KAT~~~~~ppk~Khv~~ii~~t~~~~~~~~~~~~~L~~R~~~~~w~va~K~LivlH~llreG~~~~~~~l~ 100 (299)
T 1hx8_A 25 AKSVCKATTEECIGPKKKHLDYLVHCANEPNVSIPHLANLLIERSQNANWVVVYKSLITTHHLMAYGNERFMQYLA 100 (299)
T ss_dssp HHHHHHHSCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3579999999988899888888888777766678899999999999999999999999999999998776655553
No 28
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=93.48 E-value=0.39 Score=43.94 Aligned_cols=94 Identities=19% Similarity=0.253 Sum_probs=75.3
Q ss_pred CcChH----HHHHHHHHHhcC----CccHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHH
Q 014390 16 DVDWT----KNIEICELVARD----QRHAKDVIKAIKKRL-GSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPIL 86 (425)
Q Consensus 16 ~~Dw~----~ileICD~In~~----~~~akeAvraIrKRL-~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L 86 (425)
+.||. .+..|+.++... ...-.+.+.+|+++| +..|+++...|+..|..|.+..|..|+..+ ..++..|
T Consensus 26 s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~--~~ilp~l 103 (242)
T 2qk2_A 26 EKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA--SACVPSL 103 (242)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHH
Confidence 57886 677788888762 123468899999999 599999999999999999999999887655 3577777
Q ss_pred HHHhhcCCCHhHHHHHHHHHHHHHHh
Q 014390 87 VKIVKKKSDLPVRERIFLLLDATQTS 112 (425)
Q Consensus 87 ~klv~~k~~~~Vk~KiL~Ll~~W~~~ 112 (425)
...+.++ ...||+.+...+..+...
T Consensus 104 l~~l~d~-~~~vr~~a~~aL~~~~~~ 128 (242)
T 2qk2_A 104 LEKFKEK-KPNVVTALREAIDAIYAS 128 (242)
T ss_dssp HHGGGCC-CHHHHHHHHHHHHHHHTT
T ss_pred HHHHcCC-CHHHHHHHHHHHHHHHHc
Confidence 7777764 578999999999988653
No 29
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=93.38 E-value=0.57 Score=40.65 Aligned_cols=90 Identities=9% Similarity=0.104 Sum_probs=62.2
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHh---hcCCCH
Q 014390 22 NIEICELVARDQRHAKDVIKAIKKRLGSK--NTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIV---KKKSDL 96 (425)
Q Consensus 22 ileICD~In~~~~~akeAvraIrKRL~~~--n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv---~~k~~~ 96 (425)
|-.+..-+-.....+++.+..+.++|... ++...+.-|-|++-++.||-.+...++. ..|-..|..++ ....++
T Consensus 22 Iq~~s~W~l~h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk~k~~~~f~-~~F~~~L~~~~~~~~~~~~~ 100 (142)
T 2km4_A 22 ISSASKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKGQKIIQFQ-DSFGKVAAEVLGRINQEFPR 100 (142)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHGGGTCCHHH-HHHHHTHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHhhcCchHHH-HHHHHHHHHHHHHHHHcCCH
Confidence 44444444455567999999999999765 7788888999999999999654222221 12222333333 233688
Q ss_pred hHHHHHHHHHHHHHHh
Q 014390 97 PVRERIFLLLDATQTS 112 (425)
Q Consensus 97 ~Vk~KiL~Ll~~W~~~ 112 (425)
.+++|+..+|..|.+.
T Consensus 101 ~~~~kv~rvl~iWeer 116 (142)
T 2km4_A 101 DLKKKLSRVVNILKER 116 (142)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcc
Confidence 9999999999999763
No 30
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=93.32 E-value=0.34 Score=47.67 Aligned_cols=75 Identities=9% Similarity=0.045 Sum_probs=63.4
Q ss_pred hHHHHHHhCCCCCCcChHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhh
Q 014390 3 TELVNSATSEKLADVDWTKNIEICELVARDQRHAKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLV 77 (425)
Q Consensus 3 ~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eI 77 (425)
+..|-|||+.....|+-..+-+|............+.+++|.+||..+|+.+.+-||.++..|+..+.+.|-.++
T Consensus 30 ~~aV~KATs~~~~pPk~Khv~~il~~T~~~~~~~~~i~~~L~~Rl~~~~w~vv~KaLivlH~llreG~~~~l~~~ 104 (310)
T 3zym_A 30 SKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKSLITTHHLMVYGNERFIQYL 104 (310)
T ss_dssp HHHHHHHTCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHhcCcCCCCCCChhHHHHHHHHHccCCCcHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 457999999988888888888877776666666789999999999999999999999999999998876654443
No 31
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=89.67 E-value=2 Score=40.21 Aligned_cols=78 Identities=18% Similarity=0.350 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchh---hhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHHHHHHHh
Q 014390 36 AKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGD---HIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDATQTS 112 (425)
Q Consensus 36 akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~---~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll~~W~~~ 112 (425)
....+..|..-|+++|+.+...+|..|..|+.+++. .|...+ .+.++..|.+++.+ +++.||+...+.+-.-...
T Consensus 144 l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l-~~~iip~l~~~l~D-~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 144 NEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYL-KDEVVPIVIQIVND-TQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp THHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHH-TTTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHH-HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHH
Confidence 446777788888999999999999999999999984 454433 35788888888876 4788999999999887777
Q ss_pred hcC
Q 014390 113 LGG 115 (425)
Q Consensus 113 ~~~ 115 (425)
+|.
T Consensus 222 vG~ 224 (249)
T 2qk1_A 222 FGM 224 (249)
T ss_dssp HCS
T ss_pred hCH
Confidence 754
No 32
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=87.51 E-value=2 Score=40.14 Aligned_cols=96 Identities=14% Similarity=0.174 Sum_probs=70.3
Q ss_pred CCcChH----HHHHHHH-HHhcCC-----c-cHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHhcch-hhhh-Hhhccc
Q 014390 15 ADVDWT----KNIEICE-LVARDQ-----R-HAKDVIKAIKKRL-GSKNTNVQLYAVMLLEMLMNNIG-DHIH-KLVIDT 80 (425)
Q Consensus 15 ~~~Dw~----~ileICD-~In~~~-----~-~akeAvraIrKRL-~~~n~~vql~AL~LLe~~VkNCG-~~Fh-~eIas~ 80 (425)
.+.+|. ...+|.. .++..+ . .-.+.+++|++.| +..|..++..|+..|..+.+..+ ..|. ... .
T Consensus 26 ~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~--~ 103 (249)
T 2qk1_A 26 TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYV--S 103 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHH--H
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHH--H
Confidence 467887 4555666 554321 1 2267899999999 89999999999999999998887 7766 322 2
Q ss_pred chHHHHHHHhhcCCCHhHHHHHHHHHHHHHHhh
Q 014390 81 GILPILVKIVKKKSDLPVRERIFLLLDATQTSL 113 (425)
Q Consensus 81 ~FL~~L~klv~~k~~~~Vk~KiL~Ll~~W~~~~ 113 (425)
.++..|...++++. ..|++.+...+..|....
T Consensus 104 ~llp~ll~~l~dkk-~~V~~aa~~al~~i~~~~ 135 (249)
T 2qk1_A 104 LVFTPLLDRTKEKK-PSVIEAIRKALLTICKYY 135 (249)
T ss_dssp HHHHHHHHGGGCCC-HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHc
Confidence 35556666666543 679999999999998765
No 33
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=86.84 E-value=1.2 Score=36.39 Aligned_cols=74 Identities=11% Similarity=0.183 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHhhHHHHHHHHH
Q 014390 186 SIIQKASNALEVLKDVLDAVGTQNPEGAKDEFTLDLVEQCSFQKQRVMHLVMTSRDEKVVSQAIDLNEQLQNVLAR 261 (425)
Q Consensus 186 ~ele~~~~~~~LL~EML~~~~p~~~~~~d~Eli~EL~~~Cr~~q~rI~~lI~~v~dEelL~~LL~~NDeL~~aL~r 261 (425)
+.+..+++.++++-+=+......+.++..|..++.||.+.-.|.+++|+||+..++.-. ..=.+.|.|..+=+.
T Consensus 4 ef~~~l~~sv~if~NRmksn~~RGrsi~nDssVQsLF~~lt~MH~~Ll~~i~~~ee~R~--~yE~LQDkL~qi~eA 77 (98)
T 3f1i_H 4 QFLKALQNAVTTFVNRMKSNHMRGRSITNDSAVLSLFQSINGMHPQLLELLNQLDERRL--YYEGLQDKLAQIRDA 77 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 35778899999987655544334456888999999999999999999999987654433 333445666554433
No 34
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=86.21 E-value=3.8 Score=36.38 Aligned_cols=94 Identities=13% Similarity=0.119 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHh----------hcc--cchHHHH
Q 014390 19 WTKNIEICELVARDQRHAKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKL----------VID--TGILPIL 86 (425)
Q Consensus 19 w~~ileICD~In~~~~~akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~e----------Ias--~~FL~~L 86 (425)
-+.|-.|..+.-..-...+-.+..|.+-++.--+.-=|=+|-|+|..++||-+.+... ++. .+|-+-+
T Consensus 22 ~skI~~LT~~A~~nv~~~~~iv~~l~~~ikk~p~~hKL~~LYVvDSIvR~~~~~~~k~g~~~~a~~gt~a~~v~~~~e~i 101 (157)
T 3clj_A 22 GSRIKKLTTYALDHIDIESKIISLIIDYSRLCPDSHKLGSLYIIDSIGRAYLDETRSNSNSSSNKPGTCAHAINTLGEVI 101 (157)
T ss_dssp HHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHTCCC----STTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCcceeeeeeehHHHHHHHHHHHHhcCCccCCCCccHHHHHHHHHHHH
Confidence 3445555555555545577788999999987777777889999999999987655221 110 1122222
Q ss_pred HHHhhc---CCCHhHHHHHHHHHHHHHHh
Q 014390 87 VKIVKK---KSDLPVRERIFLLLDATQTS 112 (425)
Q Consensus 87 ~klv~~---k~~~~Vk~KiL~Ll~~W~~~ 112 (425)
..++.+ ..++..|.||..||+.|+..
T Consensus 102 ~~l~~~~~~~~~~~~k~Ki~klldiW~k~ 130 (157)
T 3clj_A 102 QELLSDAIAKSNQDHKEKIRMLLDIWDRS 130 (157)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccC
Confidence 233222 35788999999999999865
No 35
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=84.19 E-value=2.2 Score=39.94 Aligned_cols=75 Identities=17% Similarity=0.132 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHH----HHHHHhhcCCCHhHHHHHHHHHHHHHH
Q 014390 36 AKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILP----ILVKIVKKKSDLPVRERIFLLLDATQT 111 (425)
Q Consensus 36 akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~----~L~klv~~k~~~~Vk~KiL~Ll~~W~~ 111 (425)
...++..|..-++++||+++.-+|..|..|+.+.|... +.-+.++. .+.+++.. .++.||+-.+.++..-+.
T Consensus 137 ~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~---~~~k~~l~~i~~~l~k~l~d-~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 137 ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTN---VNVQTFLPELLKHVPQLAGH-GDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTT---CCHHHHHHHHGGGHHHHHTC-SSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCc---CCchhHHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHH
Confidence 45567778888899999999999999999999987542 22233444 44445544 678999999988866554
Q ss_pred hhc
Q 014390 112 SLG 114 (425)
Q Consensus 112 ~~~ 114 (425)
.+|
T Consensus 213 ~~G 215 (278)
T 4ffb_C 213 VTG 215 (278)
T ss_dssp C--
T ss_pred HhC
Confidence 443
No 36
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=83.59 E-value=5 Score=36.33 Aligned_cols=76 Identities=18% Similarity=0.201 Sum_probs=57.8
Q ss_pred cHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhh--hhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHHHHHHHh
Q 014390 35 HAKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDH--IHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDATQTS 112 (425)
Q Consensus 35 ~akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~--Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll~~W~~~ 112 (425)
+....+..|...|+++|+.+...++..|..|+.++|.. |...+ ..++..|.+++.+ .++.||..+.+.|......
T Consensus 130 ~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~D-~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 130 SLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL--KLLTTSLVKTLNE-PDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHH
Confidence 35677788888899999999999999999999988743 33333 3677777777765 4678999998888665544
Q ss_pred h
Q 014390 113 L 113 (425)
Q Consensus 113 ~ 113 (425)
+
T Consensus 207 v 207 (242)
T 2qk2_A 207 M 207 (242)
T ss_dssp H
T ss_pred c
Confidence 4
No 37
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=82.95 E-value=3.3 Score=39.58 Aligned_cols=72 Identities=14% Similarity=0.226 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHHHHH
Q 014390 36 AKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDAT 109 (425)
Q Consensus 36 akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll~~W 109 (425)
.++++..|.+-|..+|+.++++||.+|+-+.|-........+- +++++.++++++. .|..|.=+.+.++...
T Consensus 31 ~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~-e~~Ld~iI~llk~-~dEkval~A~r~L~~L 102 (265)
T 3b2a_A 31 DKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVL-ERHLDVFINALSQ-ENEKVTIKALRALGYL 102 (265)
T ss_dssp CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHTCCS-TTHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHH-HHHHHHHHHHHhc-cchhHHHHHHHHHHHH
Confidence 3457788888899999999999999999999997555444443 6899999999965 4667877777776544
No 38
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=79.91 E-value=8.5 Score=33.36 Aligned_cols=70 Identities=16% Similarity=0.181 Sum_probs=58.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHHHHH
Q 014390 38 DVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDAT 109 (425)
Q Consensus 38 eAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll~~W 109 (425)
.++..|.+-|++.++.++..|+..|-.|..+. ......+.....+..|++++.. .++.|+++++..|...
T Consensus 138 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 138 GALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQSH-ENEKIQKEAQEALEKL 207 (210)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-cHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHH
Confidence 36788889999999999999999999998764 4556677778899999999985 5778999998887643
No 39
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=79.38 E-value=3.8 Score=38.31 Aligned_cols=72 Identities=15% Similarity=0.114 Sum_probs=48.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcc----cchHHHHH-HHhhcCCCHhHHHHHHHHHHHHHH
Q 014390 39 VIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVID----TGILPILV-KIVKKKSDLPVRERIFLLLDATQT 111 (425)
Q Consensus 39 AvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas----~~FL~~L~-klv~~k~~~~Vk~KiL~Ll~~W~~ 111 (425)
....|+|.++..|..+|..||.+|..+++++|..+...-.. ..++..|+ |++. ...+.++..+++.+..|..
T Consensus 56 ~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~-~~k~~~~~~a~~~l~~~~~ 132 (278)
T 4ffb_C 56 DPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLT-SSRATTKTQSMSCILSLCG 132 (278)
T ss_dssp CTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSS-CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhc-CccHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999988654221111 22333333 3222 2456789999888887764
No 40
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=76.48 E-value=23 Score=31.02 Aligned_cols=94 Identities=20% Similarity=0.228 Sum_probs=68.4
Q ss_pred CcChHHHHHHHHHHhc---CCccH------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHH
Q 014390 16 DVDWTKNIEICELVAR---DQRHA------KDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPIL 86 (425)
Q Consensus 16 ~~Dw~~ileICD~In~---~~~~a------keAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L 86 (425)
.+|+......|..+.. ..... ..++..|.+-|.+.++.++..|+..|-.+.... ......+.+..++..|
T Consensus 139 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~~~i~~L 217 (252)
T 4hxt_A 139 STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-TSAIKAIVDAGGVEVL 217 (252)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB-HHHHHHHHHTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHH
Confidence 4566665555555442 11111 237888999999999999999999999888743 4556667778899999
Q ss_pred HHHhhcCCCHhHHHHHHHHHHHHHH
Q 014390 87 VKIVKKKSDLPVRERIFLLLDATQT 111 (425)
Q Consensus 87 ~klv~~k~~~~Vk~KiL~Ll~~W~~ 111 (425)
..++.. .++.|++.++..|..-..
T Consensus 218 ~~ll~~-~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 218 QKLLTS-TDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHGGGC-SCHHHHHHHHHHHHHHHH
T ss_pred HHHHCC-CcHHHHHHHHHHHHHHHc
Confidence 999986 467899999888866543
No 41
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=76.12 E-value=17 Score=31.34 Aligned_cols=92 Identities=17% Similarity=0.223 Sum_probs=66.1
Q ss_pred CCcChHHHHHHHHHHhc----CCccH-----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHH
Q 014390 15 ADVDWTKNIEICELVAR----DQRHA-----KDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPI 85 (425)
Q Consensus 15 ~~~Dw~~ileICD~In~----~~~~a-----keAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~ 85 (425)
.++|+..-...|..+.. +.... ..++..|.+-|++.++.++..|+..|-.+..+. ......+.+...+..
T Consensus 22 ~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~ 100 (210)
T 4db6_A 22 NSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPA 100 (210)
T ss_dssp TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cHHHHHHHHCCCHHH
Confidence 45677666665555432 22111 146788999999999999999999998887654 344556667789999
Q ss_pred HHHHhhcCCCHhHHHHHHHHHHH
Q 014390 86 LVKIVKKKSDLPVRERIFLLLDA 108 (425)
Q Consensus 86 L~klv~~k~~~~Vk~KiL~Ll~~ 108 (425)
|+.++... ++.|+..++..|..
T Consensus 101 L~~lL~~~-~~~v~~~a~~~L~~ 122 (210)
T 4db6_A 101 LVQLLSSP-NEQILQEALWALSN 122 (210)
T ss_dssp HHHHTTCS-CHHHHHHHHHHHHH
T ss_pred HHHHHcCC-cHHHHHHHHHHHHH
Confidence 99999865 67898888877753
No 42
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=73.53 E-value=9.1 Score=36.80 Aligned_cols=69 Identities=16% Similarity=0.263 Sum_probs=57.8
Q ss_pred HHHHHHH-HhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHHHH
Q 014390 39 VIKAIKK-RLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDA 108 (425)
Q Consensus 39 AvraIrK-RL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll~~ 108 (425)
++..|-+ -|++.++.++..|+..|-.++.|. +.++..|.+...+..|+.+++...+..|+.+++..|-.
T Consensus 82 ~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n-~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsn 151 (296)
T 1xqr_A 82 GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNV-AAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISC 151 (296)
T ss_dssp HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-HHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 5677777 678999999999999999999986 56777888889999999999875567899988766644
No 43
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=72.63 E-value=13 Score=35.59 Aligned_cols=70 Identities=16% Similarity=0.279 Sum_probs=57.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHHHHH
Q 014390 38 DVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDAT 109 (425)
Q Consensus 38 eAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll~~W 109 (425)
.++..|.+-|+++++.++..|..+|-.+..+ .......|.+..++..|+.++... +..|++.++..|..-
T Consensus 167 ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~~-d~~v~~~al~aL~~l 236 (296)
T 1xqr_A 167 DGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQLVALVRTE-HSPFHEHVLGALCSL 236 (296)
T ss_dssp THHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTSC-CSTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcCC-ChhHHHHHHHHHHHH
Confidence 3667788888899999999999999998877 456677788889999999999864 678999998888543
No 44
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=72.12 E-value=14 Score=32.44 Aligned_cols=69 Identities=22% Similarity=0.234 Sum_probs=56.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHHHHH
Q 014390 39 VIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDAT 109 (425)
Q Consensus 39 AvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll~~W 109 (425)
++..|.+.|++.++.++..|+..|-.+..+.. .....+.....+..|++++... +..|+..++..|...
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l 71 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPA-SAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANI 71 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc-HHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 57788899999999999999999999988875 4556677778999999999874 578998888777543
No 45
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=68.91 E-value=48 Score=31.87 Aligned_cols=92 Identities=17% Similarity=0.167 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchh-hhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHHHHHHHhhc
Q 014390 36 AKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGD-HIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDATQTSLG 114 (425)
Q Consensus 36 akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~-~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll~~W~~~~~ 114 (425)
-...+..|...|++.++++..-|+..|-.+...|+. .+...+ ..++..|..++.+. ++.||..+...|......++
T Consensus 364 ~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 364 VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDP-SVVVRDTAAWTVGRICELLP 440 (462)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcc
Confidence 346777888889999999999999999999998873 343333 45778888888764 58899999999988777664
Q ss_pred CCCCCcchHHHHHHHH
Q 014390 115 GASGKFPQYYTAYYEL 130 (425)
Q Consensus 115 ~~~~~~~~i~~~Y~~L 130 (425)
..-...+.+..++..|
T Consensus 441 ~~~~~~~~l~~ll~~L 456 (462)
T 1ibr_B 441 EAAINDVYLAPLLQCL 456 (462)
T ss_dssp GGCCSTTTHHHHHHHH
T ss_pred cccccHHHHHHHHHHH
Confidence 3210124555555554
No 46
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=68.78 E-value=24 Score=34.94 Aligned_cols=93 Identities=18% Similarity=0.138 Sum_probs=62.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhH---hhc------ccchHHHHHHHhh--cCCCHhHHHHHHHHHH
Q 014390 39 VIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHK---LVI------DTGILPILVKIVK--KKSDLPVRERIFLLLD 107 (425)
Q Consensus 39 AvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~---eIa------s~~FL~~L~klv~--~k~~~~Vk~KiL~Ll~ 107 (425)
.++-|..-+.+.+..|+-.||.||..+|.++...|.. +|. ....+..|++++. +..|.+++-..+.||.
T Consensus 203 fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN 282 (339)
T 3dad_A 203 TIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLIN 282 (339)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 4444444555678899999999999999998544433 332 1234677778886 3478889999999987
Q ss_pred HHHHhhcCCCCCcchHHHHHHHHHHcCC
Q 014390 108 ATQTSLGGASGKFPQYYTAYYELVSAGV 135 (425)
Q Consensus 108 ~W~~~~~~~~~~~~~i~~~Y~~Lk~~Gv 135 (425)
+- |.+. ++-..++++-..|..+|+
T Consensus 283 ~l---L~~a-pd~d~~~di~d~Le~~gi 306 (339)
T 3dad_A 283 KT---LAAL-PDQDSFYDVTDALEQQGM 306 (339)
T ss_dssp HH---HHHC-SSHHHHHHHHHHHHHTTH
T ss_pred HH---HhcC-CChhHHHHHHHHHHHccH
Confidence 53 2221 233346777777888886
No 47
>3f1i_S STAM-1, signal transducing adapter molecule 1; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=66.79 E-value=43 Score=26.18 Aligned_cols=71 Identities=14% Similarity=0.157 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHhhHHHHHHHHHHHhhhh
Q 014390 194 ALEVLKDVLDAVGTQNPEGAKDEFTLDLVEQCSFQKQRVMHLVMTSRDEKVVSQAIDLNEQLQNVLARHDVLLS 267 (425)
Q Consensus 194 ~~~LL~EML~~~~p~~~~~~d~Eli~EL~~~Cr~~q~rI~~lI~~v~dEelL~~LL~~NDeL~~aL~rYe~l~~ 267 (425)
.++-.-.+|..++|.++. .+-..+.+|=.+|-+|=+-|=.=++.++ .--.+|=++|..+..||..|..+.+
T Consensus 6 kmd~~L~~l~~aDP~~~~-~D~~el~~LE~~c~~MgplId~kLE~iD--rkh~~Lteln~~~leaL~lY~~lM~ 76 (77)
T 3f1i_S 6 KMDQLLQMLQSTDPSDDQ-PDLPELLHLEAMCHQMGPLIDEKLEDID--RKHSELSELNVKVMEALSLYTKLMN 76 (77)
T ss_dssp HHHHHHHHHHTCCTTSCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCCC-CCcHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555678889998763 4557788999999999887744444443 2235678899999999999998753
No 48
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=65.70 E-value=16 Score=32.44 Aligned_cols=68 Identities=22% Similarity=0.313 Sum_probs=54.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHHHH
Q 014390 39 VIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDA 108 (425)
Q Consensus 39 AvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll~~ 108 (425)
++..|.+-|++.++.++..|+..|-.+.... ..+...+.....+..|+.++.. .++.|+..++..|..
T Consensus 55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~ 122 (252)
T 4db8_A 55 ALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSN 122 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHH
Confidence 5667777888999999999999999888754 4556777778899999999987 467899988877754
No 49
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=63.00 E-value=18 Score=32.06 Aligned_cols=69 Identities=22% Similarity=0.295 Sum_probs=55.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHHHH
Q 014390 38 DVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDA 108 (425)
Q Consensus 38 eAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll~~ 108 (425)
.++..|.+-|.+.++.++..|+..|-.+..+.. .....+.+..++..|+.++... ++.|+..++..|..
T Consensus 138 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~ 206 (252)
T 4db8_A 138 GALPALVQLLSSPNEQILQEALWALSNIASGGN-EQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSN 206 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTCHHHHHHGGGCS-SHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh-HHHHHHHHCCCHHHHHHHHCCC-CHHHHHHHHHHHHH
Confidence 367888888999999999999999999887653 3344556678999999999864 78899988877754
No 50
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=61.65 E-value=53 Score=28.05 Aligned_cols=78 Identities=18% Similarity=0.136 Sum_probs=43.5
Q ss_pred CCcChHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCC
Q 014390 15 ADVDWTKNIEICELVARDQRHAKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKS 94 (425)
Q Consensus 15 ~~~Dw~~ileICD~In~~~~~akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~ 94 (425)
.++||..-...+..+..-. ...++..|.+.|++.++.+...|+..|..+ ++...+..|.+++.+ .
T Consensus 24 ~~~~~~vr~~A~~~L~~~~--~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~------------~~~~~~~~L~~~l~d-~ 88 (201)
T 3ltj_A 24 QDDSYYVRRAAAYALGKIG--DERAVEPLIKALKDEDAWVRRAAADALGQI------------GDERAVEPLIKALKD-E 88 (201)
T ss_dssp TCSCHHHHHHHHHHHHHHC--CGGGHHHHHHHTTCSSHHHHHHHHHHHHHH------------CCGGGHHHHHHHTTC-S
T ss_pred cCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHcCCCHHHHHHHHHHHHhh------------CCHHHHHHHHHHHcC-C
Confidence 3456655555554444321 134566677777777777777766665433 223455666666654 3
Q ss_pred CHhHHHHHHHHHH
Q 014390 95 DLPVRERIFLLLD 107 (425)
Q Consensus 95 ~~~Vk~KiL~Ll~ 107 (425)
++.||..++..|.
T Consensus 89 ~~~vr~~a~~aL~ 101 (201)
T 3ltj_A 89 DGWVRQSAAVALG 101 (201)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5556666665554
No 51
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=60.43 E-value=23 Score=34.72 Aligned_cols=68 Identities=15% Similarity=0.167 Sum_probs=55.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHH
Q 014390 39 VIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLL 106 (425)
Q Consensus 39 AvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll 106 (425)
++..|.+-|.++++.+|..|...|-.|..+.+......|.+...+..|++++....+..+++.++..|
T Consensus 128 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL 195 (354)
T 3nmw_A 128 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSAL 195 (354)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 47788888899999999999999999987644566777888889999999876656778888777666
No 52
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=59.74 E-value=21 Score=35.89 Aligned_cols=73 Identities=18% Similarity=0.196 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHHHH
Q 014390 36 AKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDA 108 (425)
Q Consensus 36 akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll~~ 108 (425)
..+.+..|.+.|++.++.+++.|+..|-.++..........+.....+..|+.++....++.|+..++..|..
T Consensus 72 ~~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~ 144 (528)
T 4b8j_A 72 KLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTN 144 (528)
T ss_dssp ---CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 3456888999999999999999999998888766544455566778999999999876557888877666643
No 53
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=58.79 E-value=29 Score=33.42 Aligned_cols=72 Identities=22% Similarity=0.270 Sum_probs=57.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHHHHHH
Q 014390 38 DVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDATQ 110 (425)
Q Consensus 38 eAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll~~W~ 110 (425)
.++..|.+-|++.++.++..|+..|-.+..++ ..+...+.....+..|.+++....+..|+..++..|....
T Consensus 107 ~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~ 178 (450)
T 2jdq_A 107 GAVPIFIELLSSEFEDVQEQAVWALGNIAGDS-TMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLC 178 (450)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHccCC-HHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 46778888889999999999999999988776 3355556667889999999986567889998887775443
No 54
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=57.32 E-value=29 Score=30.06 Aligned_cols=79 Identities=20% Similarity=0.130 Sum_probs=49.6
Q ss_pred CCCcChHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcC
Q 014390 14 LADVDWTKNIEICELVARDQRHAKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKK 93 (425)
Q Consensus 14 l~~~Dw~~ileICD~In~~~~~akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k 93 (425)
+.++|+..-...+..+..-. ..+++..|.+.|.+.++.+...|+..|-.+ +..+.+..|..++.+
T Consensus 90 l~~~~~~vr~~a~~aL~~~~--~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~------------~~~~~~~~L~~~l~d- 154 (211)
T 3ltm_A 90 LKDEDGWVRQSAAVALGQIG--DERAVEPLIKALKDEDWFVRIAAAFALGEI------------GDERAVEPLIKALKD- 154 (211)
T ss_dssp TTCSSHHHHHHHHHHHHHHC--CGGGHHHHHHHTTCSSHHHHHHHHHHHHHH------------CCGGGHHHHHHHTTC-
T ss_pred HcCCCHHHHHHHHHHHHHhC--cHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------------CCHHHHHHHHHHHcC-
Confidence 34567766666666555422 235677888888888888888888777554 123456666666644
Q ss_pred CCHhHHHHHHHHHH
Q 014390 94 SDLPVRERIFLLLD 107 (425)
Q Consensus 94 ~~~~Vk~KiL~Ll~ 107 (425)
.++.||..++..|.
T Consensus 155 ~~~~vr~~a~~aL~ 168 (211)
T 3ltm_A 155 EDGWVRQSAADALG 168 (211)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 35567766665553
No 55
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=57.00 E-value=46 Score=32.98 Aligned_cols=59 Identities=14% Similarity=0.323 Sum_probs=36.2
Q ss_pred HHHHhC---CCCHHHHHHHHHHHHHHHhcchh-h-hhHhh---cccchHHHHHHHhhcC-CCHhHHHH
Q 014390 43 IKKRLG---SKNTNVQLYAVMLLEMLMNNIGD-H-IHKLV---IDTGILPILVKIVKKK-SDLPVRER 101 (425)
Q Consensus 43 IrKRL~---~~n~~vql~AL~LLe~~VkNCG~-~-Fh~eI---as~~FL~~L~klv~~k-~~~~Vk~K 101 (425)
|.+.|+ ..+..+|++|++|+..++.++.. . |...+ ....+-+.+.+.++.. +++..+++
T Consensus 259 Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 259 LVSILEEKNGADPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 337786 78899999999999999999863 2 43322 2222223344444432 56555544
No 56
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=56.26 E-value=45 Score=30.89 Aligned_cols=69 Identities=23% Similarity=0.191 Sum_probs=56.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHHH
Q 014390 38 DVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLD 107 (425)
Q Consensus 38 eAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll~ 107 (425)
-++..|.+-|+++++.+|..|...|-.+...+ ......|....-+..|++++....+..+++.+...|.
T Consensus 52 G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~-~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~ 120 (233)
T 3tt9_A 52 RGILKLLQLLKVQNEDVQRAVCGALRNLVFED-NDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLW 120 (233)
T ss_dssp THHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-HHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 35788888999999999999999999988743 3456778888999999999987667889998877763
No 57
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=55.99 E-value=37 Score=32.37 Aligned_cols=67 Identities=21% Similarity=0.227 Sum_probs=54.3
Q ss_pred cHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchH---HHHHHHhhcCCCHhHHHHHHHHHHH
Q 014390 35 HAKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGIL---PILVKIVKKKSDLPVRERIFLLLDA 108 (425)
Q Consensus 35 ~akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL---~~L~klv~~k~~~~Vk~KiL~Ll~~ 108 (425)
.+.-....|..-++|+|+++-.-+|.++..++.+.|..+ .+.+ ..+.+++.+ .|..||+-.+..+..
T Consensus 164 ~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~------~~~l~~~~~ia~ll~D-~d~~VR~aAl~~lve 233 (266)
T 2of3_A 164 GPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP------LKSLSVEKTVAPFVGD-KDVNVRNAAINVLVA 233 (266)
T ss_dssp CHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG------GGGGCHHHHHGGGGGC-SSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc------cccccchHHHHHHHcC-CCHHHHHHHHHHHHH
Confidence 356667777778899999999999999999999999873 2355 777788876 578899998888754
No 58
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=55.97 E-value=66 Score=27.42 Aligned_cols=57 Identities=23% Similarity=0.163 Sum_probs=30.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHHH
Q 014390 38 DVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLD 107 (425)
Q Consensus 38 eAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll~ 107 (425)
.....+.+.|.++++.+...|+..|-.+ .....+..|..++.+ .++.||..++..|.
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~------------~~~~~~~~L~~~l~~-~~~~vr~~a~~~L~ 70 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKI------------GDERAVEPLIKALKD-EDAWVRRAAADALG 70 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHH------------CCGGGHHHHHHHTTC-SSHHHHHHHHHHHH
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhc------------CChhHHHHHHHHHcC-CCHHHHHHHHHHHH
Confidence 3445555666666666666666655432 123445555555543 34556666555553
No 59
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=55.34 E-value=34 Score=34.48 Aligned_cols=94 Identities=13% Similarity=0.124 Sum_probs=66.1
Q ss_pred CcChHHHHHHHHHHhc----CCccH-----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchh--hhhHhhcccchHH
Q 014390 16 DVDWTKNIEICELVAR----DQRHA-----KDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGD--HIHKLVIDTGILP 84 (425)
Q Consensus 16 ~~Dw~~ileICD~In~----~~~~a-----keAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~--~Fh~eIas~~FL~ 84 (425)
.++|..-.+.|-.|.. .+... ..++..|.+-|.++++.++..|+..|-.+...++. .....+.....+.
T Consensus 352 ~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~ 431 (530)
T 1wa5_B 352 SPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIK 431 (530)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHH
Confidence 4467666555555443 11111 12455677777788999999999999999888765 5555666778999
Q ss_pred HHHHHhhcCCCHhHHHHHHHHHHHHH
Q 014390 85 ILVKIVKKKSDLPVRERIFLLLDATQ 110 (425)
Q Consensus 85 ~L~klv~~k~~~~Vk~KiL~Ll~~W~ 110 (425)
.|..++... ++.|+..++..|..+.
T Consensus 432 ~L~~ll~~~-~~~v~~~al~aL~~l~ 456 (530)
T 1wa5_B 432 PLCDLLEIA-DNRIIEVTLDALENIL 456 (530)
T ss_dssp HHHHHTTTC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 999998864 7889998888876543
No 60
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=54.78 E-value=52 Score=31.62 Aligned_cols=72 Identities=11% Similarity=0.095 Sum_probs=55.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHHHHHH
Q 014390 38 DVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDATQ 110 (425)
Q Consensus 38 eAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll~~W~ 110 (425)
.++..|.+.|+++++.++..|...|-.+..++....-..+.+...+..|..++... +..|+..++..|....
T Consensus 318 ~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~ 389 (450)
T 2jdq_A 318 NIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVM-DSKIVQVALNGLENIL 389 (450)
T ss_dssp THHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSS-CHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 45667778888889999999999888888765444444455678899999998864 7889999988876543
No 61
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=53.46 E-value=70 Score=27.49 Aligned_cols=77 Identities=18% Similarity=0.139 Sum_probs=40.9
Q ss_pred CcChHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCC
Q 014390 16 DVDWTKNIEICELVARDQRHAKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSD 95 (425)
Q Consensus 16 ~~Dw~~ileICD~In~~~~~akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~ 95 (425)
++||..-...+..+..-. ..+++..|.+.|++.++.+...|+..|-.+ ++...+..|.+++.+ .+
T Consensus 30 ~~~~~vR~~A~~~L~~~~--~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~------------~~~~~~~~L~~~l~~-~~ 94 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIG--DERAVEPLIKALKDEDAWVRRAAADALGQI------------GDERAVEPLIKALKD-ED 94 (211)
T ss_dssp CSSHHHHHHHHHHHHHHC--CGGGHHHHHHHTTCSCHHHHHHHHHHHHHH------------CCGGGHHHHHHHTTC-SS
T ss_pred CCCHHHHHHHHHHHHHhC--CccHHHHHHHHHcCCCHHHHHHHHHHHHhh------------CCHHHHHHHHHHHcC-CC
Confidence 345544444444433211 134566666666666776666666555332 234555666666654 34
Q ss_pred HhHHHHHHHHHH
Q 014390 96 LPVRERIFLLLD 107 (425)
Q Consensus 96 ~~Vk~KiL~Ll~ 107 (425)
+.||..++..|.
T Consensus 95 ~~vr~~a~~aL~ 106 (211)
T 3ltm_A 95 GWVRQSAAVALG 106 (211)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 566666665553
No 62
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=52.41 E-value=60 Score=32.45 Aligned_cols=72 Identities=21% Similarity=0.230 Sum_probs=57.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHHHHHH
Q 014390 38 DVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDATQ 110 (425)
Q Consensus 38 eAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll~~W~ 110 (425)
.++..|.+-|.+.++.++..|+..|-.+...+ ..+...+.....+..|..++....+..|+..++..|....
T Consensus 160 g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~-~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 160 GAVPIFVKLLGSSSDDVREQAVWALGNVAGDS-PKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC 231 (528)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHTC-HHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 37778888889999999999999998887654 4556667777889999999976677888888887775543
No 63
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=49.48 E-value=44 Score=31.85 Aligned_cols=94 Identities=12% Similarity=0.201 Sum_probs=60.6
Q ss_pred CcChHHHHHHHHHHhcCCc-cHHHHH-------HHHHHHhCCCCHHHHHHHHHHHHHHHhcchh---hhhHhhcccchHH
Q 014390 16 DVDWTKNIEICELVARDQR-HAKDVI-------KAIKKRLGSKNTNVQLYAVMLLEMLMNNIGD---HIHKLVIDTGILP 84 (425)
Q Consensus 16 ~~Dw~~ileICD~In~~~~-~akeAv-------raIrKRL~~~n~~vql~AL~LLe~~VkNCG~---~Fh~eIas~~FL~ 84 (425)
+.||...++-+|.+...-. .+++++ +-+.-|+...|+++.+.+|.+|..++.-.+. +|+..-+ ..|+-
T Consensus 57 s~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea-~~~lP 135 (266)
T 2of3_A 57 HKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEV-SAFVP 135 (266)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH-HHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHH-HHHHH
Confidence 4588888877777765422 344433 3345588899999999999999998876644 3333221 24565
Q ss_pred HHHHHhhcCCCHhHHHHHHHHHHHHHH
Q 014390 85 ILVKIVKKKSDLPVRERIFLLLDATQT 111 (425)
Q Consensus 85 ~L~klv~~k~~~~Vk~KiL~Ll~~W~~ 111 (425)
.|+.-+.+ ....||+++..++..-..
T Consensus 136 ~LveKlGd-~k~~vR~~~r~il~~l~~ 161 (266)
T 2of3_A 136 YLLLKTGE-AKDNMRTSVRDIVNVLSD 161 (266)
T ss_dssp HHHHGGGC-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCC-ChHHHHHHHHHHHHHHHH
Confidence 55443333 235699999988865443
No 64
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=48.49 E-value=69 Score=25.73 Aligned_cols=73 Identities=14% Similarity=0.093 Sum_probs=37.2
Q ss_pred cChHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCH
Q 014390 17 VDWTKNIEICELVARDQRHAKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDL 96 (425)
Q Consensus 17 ~Dw~~ileICD~In~~~~~akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~ 96 (425)
+||..-...+..+-.- +...++..|.+.|.+.++.|...|+..|..+ ++.+.+..|.+++.+ .++
T Consensus 54 ~~~~vR~~A~~aL~~~--~~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~------------~~~~a~~~L~~~l~d-~~~ 118 (131)
T 1te4_A 54 EDWRIRGAAAWIIGNF--QDERAVEPLIKLLEDDSGFVRSGAARSLEQI------------GGERVRAAMEKLAET-GTG 118 (131)
T ss_dssp SCHHHHHHHHHHHGGG--CSHHHHHHHHHHHHHCCTHHHHHHHHHHHHH------------CSHHHHHHHHHHTTS-CCT
T ss_pred CCHHHHHHHHHHHHhc--CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh------------CcHHHHHHHHHHHhC-CCH
Confidence 4454444444444332 1245566666666666666666665554432 133445556666543 345
Q ss_pred hHHHHHHH
Q 014390 97 PVRERIFL 104 (425)
Q Consensus 97 ~Vk~KiL~ 104 (425)
.||..+..
T Consensus 119 ~vr~~A~~ 126 (131)
T 1te4_A 119 FARKVAVN 126 (131)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56655543
No 65
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=48.01 E-value=36 Score=33.98 Aligned_cols=67 Identities=18% Similarity=0.249 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHHHH
Q 014390 37 KDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDA 108 (425)
Q Consensus 37 keAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll~~ 108 (425)
...+..|.+.++..++.+...++..|..+++.+|..|.. ..++..|.++..+ .|+.||..+...+..
T Consensus 518 ~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~~~p~l~~l~~d-~d~~vr~~a~~al~~ 584 (588)
T 1b3u_A 518 KHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQ----SEVKPILEKLTQD-QDVDVKYFAQEALTV 584 (588)
T ss_dssp HHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHH----HHHHHHHHHHTTC-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhH----HHHHHHHHHHcCC-CchhHHHHHHHHHHH
Confidence 456677888888899999999999999999988887643 4566777776544 577898888777654
No 66
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=47.73 E-value=35 Score=36.12 Aligned_cols=68 Identities=21% Similarity=0.186 Sum_probs=55.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHH
Q 014390 39 VIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLL 106 (425)
Q Consensus 39 AvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll 106 (425)
++..|.+-|.+.++.+|..|...|-.|...++......|....-+..|+++++...+..+++.+...|
T Consensus 91 ~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL 158 (584)
T 3l6x_A 91 GIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTL 158 (584)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred CcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 56778888899999999999999999988655677888888899999999998755666776665444
No 67
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=46.97 E-value=76 Score=33.14 Aligned_cols=84 Identities=14% Similarity=0.098 Sum_probs=55.1
Q ss_pred ChHHHHHHHHHHhcCCccH---HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCC
Q 014390 18 DWTKNIEICELVARDQRHA---KDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKS 94 (425)
Q Consensus 18 Dw~~ileICD~In~~~~~a---keAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~ 94 (425)
+.+...+.+..|-.-...+ ..|+..|.+-|.++++++++.||..|..++......|. ++...+..++.+ .
T Consensus 290 ~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~------~~~~~i~~~l~d-~ 362 (618)
T 1w63_A 290 GNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQ------RHRSTIVDCLKD-L 362 (618)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHG------GGHHHHHHGGGS-S
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHH------HHHHHHHHHccC-C
Confidence 4455556555544322222 24788888889999999999999999998877544332 244455555554 4
Q ss_pred CHhHHHHHHHHHHH
Q 014390 95 DLPVRERIFLLLDA 108 (425)
Q Consensus 95 ~~~Vk~KiL~Ll~~ 108 (425)
|..||.+.++++..
T Consensus 363 d~~Ir~~alelL~~ 376 (618)
T 1w63_A 363 DVSIKRRAMELSFA 376 (618)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHH
Confidence 56788888777754
No 68
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=46.57 E-value=98 Score=28.83 Aligned_cols=90 Identities=18% Similarity=0.128 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcc---cchHHHHHHHhhc-CCC
Q 014390 20 TKNIEICELVARDQRHAKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVID---TGILPILVKIVKK-KSD 95 (425)
Q Consensus 20 ~~ileICD~In~~~~~akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas---~~FL~~L~klv~~-k~~ 95 (425)
+.+.=||++.+.+--..+.+...|++=|.+.+.. .+.+|=.++++||..+...-+. ..+++.|..++.. +.+
T Consensus 148 g~i~FIgeLy~~~~l~~~i~~~~l~~Ll~~~~e~----~iE~l~~lL~tvG~~L~~~~~~~~l~~~f~~l~~~~~~~~ls 223 (260)
T 1hu3_A 148 GNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDEE----SLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIVKERKTS 223 (260)
T ss_dssp HHHHHHHHHHTTTCSCHHHHHHHHHHHHHSCSHH----HHHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHSCSSC
T ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhCCCCC
Confidence 5555588999988777777777777777776654 5677777788889988763322 3456667776653 467
Q ss_pred HhHHHHHHHHHHHHHHhh
Q 014390 96 LPVRERIFLLLDATQTSL 113 (425)
Q Consensus 96 ~~Vk~KiL~Ll~~W~~~~ 113 (425)
..||--|..+++.-...|
T Consensus 224 ~Rirfmi~~l~dLR~~~W 241 (260)
T 1hu3_A 224 SRIRFMLQDVIDLRLCNW 241 (260)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 778888888876544433
No 69
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=45.58 E-value=78 Score=34.04 Aligned_cols=82 Identities=17% Similarity=0.284 Sum_probs=65.6
Q ss_pred HHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcc-cchHHHHHHHhhcCCCHhHHHH
Q 014390 23 IEICELVARDQRHAKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVID-TGILPILVKIVKKKSDLPVRER 101 (425)
Q Consensus 23 leICD~In~~~~~akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas-~~FL~~L~klv~~k~~~~Vk~K 101 (425)
+.++|.+-.+ .+.+..|-.-|+..+.++-++|+.+|..+..|.+..++..|-+ ..=+..|+.++.+. ...||..
T Consensus 111 ~~~~d~f~~~----~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~-rE~iRne 185 (651)
T 3grl_A 111 SQFTEIFIKQ----QENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADS-REVIRND 185 (651)
T ss_dssp HHHHHHHHHS----THHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCS-SHHHHHH
T ss_pred HHHHHHHHcC----CccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCc-hHHHHHH
Confidence 4456665444 3567778888899999999999999999999999999998874 46778999999875 3568998
Q ss_pred HHHHHHHH
Q 014390 102 IFLLLDAT 109 (425)
Q Consensus 102 iL~Ll~~W 109 (425)
.+.+|..-
T Consensus 186 allLL~~L 193 (651)
T 3grl_A 186 GVLLLQAL 193 (651)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888543
No 70
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=45.54 E-value=45 Score=34.05 Aligned_cols=69 Identities=14% Similarity=0.165 Sum_probs=55.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHH
Q 014390 38 DVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLL 106 (425)
Q Consensus 38 eAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll 106 (425)
.++..|.+-|.++++.++..|...|-.|..+.+......|.+...+..|++++....+..|++.++..|
T Consensus 243 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL 311 (458)
T 3nmz_A 243 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSAL 311 (458)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHH
T ss_pred CcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 347788888899999999999999988876544556677888889999999876656778888777766
No 71
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=45.41 E-value=61 Score=34.99 Aligned_cols=72 Identities=21% Similarity=0.131 Sum_probs=55.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHHHHHHH
Q 014390 38 DVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDATQT 111 (425)
Q Consensus 38 eAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll~~W~~ 111 (425)
.++..|.+-|++.++.++..|+..|-.|..+.. .....+.....+..|++++.. .+..|+..++..|..|..
T Consensus 234 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~-~~~~~v~~~g~v~~Lv~lL~~-~~~~v~~~a~~aL~~La~ 305 (780)
T 2z6g_A 234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAY 305 (780)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHST-THHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCh-hhHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhc
Confidence 356677778888999999999999988877642 334555567788999999986 467788888888888863
No 72
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=45.00 E-value=35 Score=34.41 Aligned_cols=72 Identities=17% Similarity=0.265 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHHH
Q 014390 36 AKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLD 107 (425)
Q Consensus 36 akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll~ 107 (425)
....+..|.+.|++.++.++..|+..|-.++......-...+....++..|+.++....++.|+..++..|.
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~ 156 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALT 156 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 345578888889999999999999988887665322222345566888999998887657788887776664
No 73
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=44.88 E-value=86 Score=32.95 Aligned_cols=69 Identities=22% Similarity=0.256 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHHHH
Q 014390 36 AKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDA 108 (425)
Q Consensus 36 akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll~~ 108 (425)
.+.|+..|.+-|.++++++++.||..|..+++..+. +..+ .++...+..+++...|..||.+.++++..
T Consensus 327 ~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~~--~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~ 395 (621)
T 2vgl_A 327 LVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS--HEAV--KTHIETVINALKTERDVSVRQRAVDLLYA 395 (621)
T ss_dssp HHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHHH--HTTHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHHH--HHHHHHHHHHhccCCCHhHHHHHHHHHHH
Confidence 456888888888899999999999999988876542 1111 23455555666534567788888888753
No 74
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=44.71 E-value=70 Score=34.53 Aligned_cols=72 Identities=15% Similarity=0.218 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHHHH
Q 014390 36 AKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDA 108 (425)
Q Consensus 36 akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll~~ 108 (425)
+..++..|.+-|.+.++.++..|+..|-.+.++.... +..+....++..|++++....++.|+..++..|..
T Consensus 148 ~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~-~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~ 219 (780)
T 2z6g_A 148 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHN 219 (780)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHH-HHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhH-HHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3667888888888999999999999999988765432 33333557899999999876678888777766643
No 75
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=44.68 E-value=61 Score=32.40 Aligned_cols=69 Identities=19% Similarity=0.096 Sum_probs=56.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHHH
Q 014390 38 DVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLD 107 (425)
Q Consensus 38 eAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll~ 107 (425)
.++..|.+-|++.++.+|..|...|-.+... .......|....-+..|++++....++.|++.+...|.
T Consensus 44 g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~-~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~ 112 (457)
T 1xm9_A 44 GGICKLVDLLRSPNQNVQQAAAGALRNLVFR-STTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLW 112 (457)
T ss_dssp THHHHHHHHTTSSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 4567888999999999999999999988874 35667778788999999999986667889888877664
No 76
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=44.19 E-value=1.8e+02 Score=30.55 Aligned_cols=76 Identities=18% Similarity=0.268 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcch-hhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHHHHHHHhhc
Q 014390 36 AKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIG-DHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDATQTSLG 114 (425)
Q Consensus 36 akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG-~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll~~W~~~~~ 114 (425)
-...+..|...|++.++++...|+..|-.+...|+ ..+...+ ..++..|...+.+ .++.||..++..|..|...+.
T Consensus 364 ~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~--~~~l~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~ 440 (876)
T 1qgr_A 364 VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKD-PSVVVRDTAAWTVGRICELLP 440 (876)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhCc
Confidence 44677788888899999999999999999999887 3343322 2456666666654 457899999999988877664
No 77
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=44.03 E-value=65 Score=30.89 Aligned_cols=73 Identities=10% Similarity=0.153 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhcc-hhhhhHhhcccchHHHHHHHhhcCC-CHhHHHHHHHHHHHHHH
Q 014390 37 KDVIKAIKKRLGSK--NTNVQLYAVMLLEMLMNNI-GDHIHKLVIDTGILPILVKIVKKKS-DLPVRERIFLLLDATQT 111 (425)
Q Consensus 37 keAvraIrKRL~~~--n~~vql~AL~LLe~~VkNC-G~~Fh~eIas~~FL~~L~klv~~k~-~~~Vk~KiL~Ll~~W~~ 111 (425)
.+.+..|...+.+. ++.+...||..|..+++.+ +..+...+ ..++..+..++.... ++.||..++..+..|-.
T Consensus 127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (462)
T 1ibr_B 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS--NEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (462)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH--HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 46777888888888 8999999999999999887 43332222 246666777776543 68899999888877643
No 78
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=43.84 E-value=2e+02 Score=30.14 Aligned_cols=76 Identities=17% Similarity=0.244 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcch-hhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHHHHHHHhhc
Q 014390 36 AKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIG-DHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDATQTSLG 114 (425)
Q Consensus 36 akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG-~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll~~W~~~~~ 114 (425)
-...+..|...|.+.++.+...|+..|-.++..|+ ..+...+ ..++..|...+.+ .++.||..++..+..+...++
T Consensus 367 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l--~~il~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~ 443 (861)
T 2bpt_A 367 LEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV--HQALPSILNLMND-QSLQVKETTAWCIGRIADSVA 443 (861)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHHhh
Confidence 45677788888889999999999999999999887 4443322 1455666666654 467899988888877776654
No 79
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=43.57 E-value=70 Score=33.20 Aligned_cols=70 Identities=24% Similarity=0.212 Sum_probs=53.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHHHHHH
Q 014390 39 VIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDATQ 110 (425)
Q Consensus 39 AvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll~~W~ 110 (425)
++..|.+-|++.++.+|..|+..|-.+..+. ......+.....+..|++++... ++.++..++..|..|.
T Consensus 99 ~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~La 168 (644)
T 2z6h_A 99 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKT-NVKFLAITTDCLQILA 168 (644)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcC-CHHHHHHHHHHHHHHH
Confidence 5667777888999999999999998887765 33445566778999999999865 5667777776776665
No 80
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=43.53 E-value=75 Score=31.31 Aligned_cols=72 Identities=15% Similarity=0.203 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHHHH
Q 014390 36 AKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDA 108 (425)
Q Consensus 36 akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll~~ 108 (425)
...++..|.+-|++.++.++..|+..|-.+..+.. .....+.....+..|++++....++.++......|..
T Consensus 15 ~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~-~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ 86 (529)
T 1jdh_A 15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHN 86 (529)
T ss_dssp --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHH-HHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCc-cHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 34468888888999999999999999999887653 2223334457888899988776678888877777654
No 81
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=43.43 E-value=87 Score=32.97 Aligned_cols=76 Identities=11% Similarity=0.297 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcC-CCHhHHHHHHHHHHHHHHhhc
Q 014390 37 KDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKK-SDLPVRERIFLLLDATQTSLG 114 (425)
Q Consensus 37 keAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k-~~~~Vk~KiL~Ll~~W~~~~~ 114 (425)
...+..|.+.|++.++.+...|+.++..+++.+|..|...+ ..++..|.+.+... .+..||..++..+..-...++
T Consensus 638 ~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~ 714 (861)
T 2bpt_A 638 ETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIG 714 (861)
T ss_dssp HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhh
Confidence 45677778888888889999999999999999998765433 35666666666653 457899999888876665553
No 82
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=43.17 E-value=78 Score=31.19 Aligned_cols=70 Identities=24% Similarity=0.209 Sum_probs=53.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHHHHHH
Q 014390 39 VIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDATQ 110 (425)
Q Consensus 39 AvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll~~W~ 110 (425)
++..|.+-|++.++.++..|+..|-.+..+... ....+.+...+..|++++.. .+..|+..+...+..|.
T Consensus 102 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~i~~~g~i~~L~~ll~~-~~~~~~~~~~~~L~~la 171 (529)
T 1jdh_A 102 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG-AKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILA 171 (529)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTT-HHHHHHHHTHHHHHHHGGGC-CCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcc-hHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHH
Confidence 566777888899999999999988888765422 24556667889999999986 45778887777777775
No 83
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=42.20 E-value=72 Score=32.31 Aligned_cols=68 Identities=22% Similarity=0.263 Sum_probs=39.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHH
Q 014390 39 VIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLL 106 (425)
Q Consensus 39 AvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll 106 (425)
.+..|.+.|++.++.+|+.|+.-+..+..+-..+--.+|.+...+..|+.++....++.++..+...|
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL 144 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWAL 144 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 35556666677777777777766655543332222334445567777777776555555655444433
No 84
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=41.53 E-value=40 Score=26.64 Aligned_cols=70 Identities=11% Similarity=0.118 Sum_probs=39.6
Q ss_pred HHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHcCC
Q 014390 62 LEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDATQTSLGGASGKFPQYYTAYYELVSAGV 135 (425)
Q Consensus 62 Le~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll~~W~~~~~~~~~~~~~i~~~Y~~Lk~~Gv 135 (425)
++.+..+.|..+....-.-.|-+.=+.-+.......+++++..+|..|....+. -..+..+++-|++-|.
T Consensus 17 ~~~ia~~lg~~Wk~Lar~Lg~~~~~I~~I~~~~~~d~~eq~~~mL~~W~~~~g~----~At~~~L~~AL~~~~~ 86 (99)
T 1fad_A 17 FDIVCDNVGRDWKRLARELKVSEAKMDGIEEKYPRSLSERVRESLKVWKNAEKK----NASVAGLVKALRTCRL 86 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHGG----GGSHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhccCC----CCcHHHHHHHHHHCCc
Confidence 344445555433332222244433333333223335999999999999876633 2347777888876653
No 85
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=41.19 E-value=82 Score=28.41 Aligned_cols=55 Identities=25% Similarity=0.330 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHH
Q 014390 37 KDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLL 106 (425)
Q Consensus 37 keAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll 106 (425)
.+++..|.+.|++.++.+...|+..|.. +++...+..|.+++.+. .|+..+...|
T Consensus 191 ~~~~~~L~~~l~d~~~~vR~~A~~aL~~------------~~~~~~~~~L~~~l~d~---~vr~~a~~aL 245 (280)
T 1oyz_A 191 SDIRDCFVEMLQDKNEEVRIEAIIGLSY------------RKDKRVLSVLCDELKKN---TVYDDIIEAA 245 (280)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHH------------TTCGGGHHHHHHHHTSS---SCCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHH------------hCCHhhHHHHHHHhcCc---cHHHHHHHHH
Confidence 3445555555555555555555544432 22456667777777642 2665555544
No 86
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=41.13 E-value=77 Score=32.90 Aligned_cols=70 Identities=14% Similarity=0.200 Sum_probs=52.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHHHH
Q 014390 38 DVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDA 108 (425)
Q Consensus 38 eAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll~~ 108 (425)
.++..|.+-|++.++.++..|+..|-.+..+... ....+.....+..|++++....++.|+..+...|..
T Consensus 14 g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~-~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~ 83 (644)
T 2z6h_A 14 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEAS-RHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHN 83 (644)
T ss_dssp TTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTH-HHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChh-HHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3577888888999999999999999999887642 233334457888899888876678888877766643
No 87
>1vf6_C Maguk P55 subfamily member 5; L27 domain, heterodimer, four-helical bundle, coiled-coil, hydrophobic packing interactions; 2.10A {Mus musculus} SCOP: a.194.1.1
Probab=40.64 E-value=17 Score=27.70 Aligned_cols=52 Identities=17% Similarity=0.274 Sum_probs=39.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHhhHHHHHHHHHHHhhh
Q 014390 213 AKDEFTLDLVEQCSFQKQRVMHLVMTSRDEKVVSQAIDLNEQLQNVLARHDVLL 266 (425)
Q Consensus 213 ~d~Eli~EL~~~Cr~~q~rI~~lI~~v~dEelL~~LL~~NDeL~~aL~rYe~l~ 266 (425)
+.+..+.||+...|.+|..+.. .+.-+|-++|.+|++ |.++++||.-|....
T Consensus 11 ~~~~elEel~sSLK~iq~~L~D-sQSQeDi~lllqL~~-~~DFQ~A~kIhNaVs 62 (72)
T 1vf6_C 11 SQDPDVEDLFSSLKHIQHTLVD-SQSQEDISLLLQLVQ-NRDFQNAFKIHNAVT 62 (72)
T ss_dssp -CCHHHHHHHHHHHHHHTTCCS-HHHHHHHHHHHHHHH-CHHHHHHHHHHHHHC
T ss_pred cCCcCHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 4567789999999988876643 234568888888876 788999999998654
No 88
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=39.45 E-value=1.4e+02 Score=31.97 Aligned_cols=74 Identities=15% Similarity=0.222 Sum_probs=57.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHHHHHHHhhc
Q 014390 38 DVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDATQTSLG 114 (425)
Q Consensus 38 eAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll~~W~~~~~ 114 (425)
..+..|.+.+.++++.+..-|+.+|..|++-||..|...+. .|+..|.+.+.. .++.|+.-+...+......++
T Consensus 629 ~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~--~~lp~l~~~l~~-~~~~v~~~a~~alg~i~~~~~ 702 (852)
T 4fdd_A 629 NILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA--DFMPILGTNLNP-EFISVCNNATWAIGEISIQMG 702 (852)
T ss_dssp CHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH--HHHHHHHHTCCT-TSHHHHHHHHHHHHHHHHHHG
T ss_pred cHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHH--HHHHHHHHHcCc-cchHHHHHHHHHHHHHHHHhh
Confidence 45788888899999999999999999999999988776654 377777777643 456788878777766665553
No 89
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=39.09 E-value=48 Score=27.49 Aligned_cols=66 Identities=12% Similarity=0.144 Sum_probs=39.7
Q ss_pred HhcchhhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHcCC
Q 014390 66 MNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDATQTSLGGASGKFPQYYTAYYELVSAGV 135 (425)
Q Consensus 66 VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll~~W~~~~~~~~~~~~~i~~~Y~~Lk~~Gv 135 (425)
.+|-|.......-.-.|-+.=+..+...+...+++++.++|..|...-+. -..+..++.-|++-|.
T Consensus 31 a~~LG~~Wk~LAR~LGlse~dId~I~~~~p~dl~eq~~qmL~~W~~r~G~----~AT~~~L~~AL~~~~l 96 (115)
T 2o71_A 31 AQRLGPEWEPMVLSLGLSQTDIYRCKANHPHNVQSQVVEAFIRWRQRFGK----QATFQSLHNGLRAVEV 96 (115)
T ss_dssp HHHCCTTHHHHHHHTTCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHGG----GCCHHHHHHHHHHTTC
T ss_pred HHHHhhhHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCc----CcHHHHHHHHHHHcCC
Confidence 45555433332222234433333333333446999999999999987642 2346788888888775
No 90
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=37.98 E-value=53 Score=27.17 Aligned_cols=70 Identities=13% Similarity=0.168 Sum_probs=43.7
Q ss_pred HHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHcCC
Q 014390 62 LEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDATQTSLGGASGKFPQYYTAYYELVSAGV 135 (425)
Q Consensus 62 Le~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll~~W~~~~~~~~~~~~~i~~~Y~~Lk~~Gv 135 (425)
|+.+.+|-|.......-.-.|-+.=+..+...+...+++++.++|..|...-+. -..+..++.-|++-|.
T Consensus 27 l~~Ia~~lG~~Wk~LAR~LGlse~dId~I~~~~p~~l~eq~~qmL~~W~~r~G~----~AT~~~L~~AL~~~~l 96 (114)
T 2of5_A 27 INQLAQRLGPEWEPMVLSLGLSQTDIYRCKANHPHNVQSQVVEAFIRWRQRFGK----QATFQSLHNGLRAVEV 96 (114)
T ss_dssp HHHHHHTCCSTHHHHHHTTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHGG----GCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCc----CcHHHHHHHHHHHcCC
Confidence 334456667654443333345544444444334447999999999999987642 2346778888888775
No 91
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=37.29 E-value=78 Score=33.05 Aligned_cols=77 Identities=18% Similarity=0.106 Sum_probs=53.4
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhHHHH
Q 014390 22 NIEICELVARDQRHAKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRER 101 (425)
Q Consensus 22 ileICD~In~~~~~akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~K 101 (425)
.+.++.+.+.+++-..-++..|+|-|+++|+.+...||..|-.+. .. +++ +.++..+.+++.+ .++-||++
T Consensus 91 Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~---~~----~~~-~~l~~~l~~~L~~-~~~~VRk~ 161 (618)
T 1w63_A 91 YLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG---SS----EMC-RDLAGEVEKLLKT-SNSYLRKK 161 (618)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC---CH----HHH-HHHHHHHHHHHHS-CCHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC---CH----HHH-HHHHHHHHHHHcC-CCHHHHHH
Confidence 345555555555556779999999999999999999998875542 11 121 3456777777765 46788888
Q ss_pred HHHHHH
Q 014390 102 IFLLLD 107 (425)
Q Consensus 102 iL~Ll~ 107 (425)
+...+.
T Consensus 162 A~~al~ 167 (618)
T 1w63_A 162 AALCAV 167 (618)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 92
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=36.67 E-value=1.6e+02 Score=29.66 Aligned_cols=69 Identities=12% Similarity=0.115 Sum_probs=54.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHHHH
Q 014390 39 VIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDA 108 (425)
Q Consensus 39 AvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll~~ 108 (425)
++..|..-|.+++..++..|...|-.+..++.......+.+...+.-|..++.. .|++|+..++..|..
T Consensus 359 ~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~-~d~~i~~~~L~aL~n 427 (510)
T 3ul1_B 359 LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA-KDTKIIQVILDAISN 427 (510)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC-CCHHHHHHHHHHHHH
Confidence 566777888899999999999888888877766555667788899999999876 477888888776643
No 93
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=35.57 E-value=1e+02 Score=32.41 Aligned_cols=76 Identities=11% Similarity=0.132 Sum_probs=51.7
Q ss_pred HHHHHHHhcCC-ccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHh---hc--CCCH
Q 014390 23 IEICELVARDQ-RHAKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIV---KK--KSDL 96 (425)
Q Consensus 23 leICD~In~~~-~~akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv---~~--k~~~ 96 (425)
=|.|+.+...+ ..|.+.++.|.+++...++.++..+|+.+--+...+. +..+.+..++ .. ..|+
T Consensus 505 GEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p----------~~~~~i~~~l~~~~~~~~~d~ 574 (621)
T 2vgl_A 505 GEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFP----------EVKATIQDVLRSDSQLKNADV 574 (621)
T ss_dssp HHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCG----------GGHHHHHHHHSSHHHHSCSSH
T ss_pred cchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHCh----------HHHHHHHHHHHHHhcCCCCCH
Confidence 35567666543 3477889999999999999999998887665544332 1223344444 33 5788
Q ss_pred hHHHHHHHHHHH
Q 014390 97 PVRERIFLLLDA 108 (425)
Q Consensus 97 ~Vk~KiL~Ll~~ 108 (425)
.||+|..++..-
T Consensus 575 evrdRA~~y~~L 586 (621)
T 2vgl_A 575 ELQQRAVEYLRL 586 (621)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999877644
No 94
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=35.34 E-value=3.1e+02 Score=28.70 Aligned_cols=97 Identities=7% Similarity=0.044 Sum_probs=64.4
Q ss_pred CCcChHHHHHHHHHHhcCCc---------cHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhh-hHhhcccchHH
Q 014390 15 ADVDWTKNIEICELVARDQR---------HAKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHI-HKLVIDTGILP 84 (425)
Q Consensus 15 ~~~Dw~~ileICD~In~~~~---------~akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~F-h~eIas~~FL~ 84 (425)
.+++|..-...|..+..=.. .....+..|.+-|++.++.+...|+..|..+...++..+ +..+ -..++.
T Consensus 376 ~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-l~~~l~ 454 (876)
T 1qgr_A 376 KNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY-LAPLLQ 454 (876)
T ss_dssp TCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT-HHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH-HHHHHH
Confidence 35678765555555542111 123567788888999999999999999999999887643 1111 134555
Q ss_pred HHHHHhhcCCCHhHHHHHHHHHHHHHHhhc
Q 014390 85 ILVKIVKKKSDLPVRERIFLLLDATQTSLG 114 (425)
Q Consensus 85 ~L~klv~~k~~~~Vk~KiL~Ll~~W~~~~~ 114 (425)
.|.+.+.+ ++.|+..++..|......++
T Consensus 455 ~l~~~l~~--~~~v~~~a~~al~~l~~~~~ 482 (876)
T 1qgr_A 455 CLIEGLSA--EPRVASNVCWAFSSLAEAAY 482 (876)
T ss_dssp HHHHHTTS--CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcC--CHHHHHHHHHHHHHHHHHhh
Confidence 56666654 47899988888777665543
No 95
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=35.22 E-value=1e+02 Score=30.55 Aligned_cols=71 Identities=11% Similarity=0.127 Sum_probs=43.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHHHHHHHhh
Q 014390 38 DVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDATQTSL 113 (425)
Q Consensus 38 eAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll~~W~~~~ 113 (425)
..+..|.+.|+..++.+...|+..|..+++.+|..|+. ..++..|..++.. .+..||..++..+......+
T Consensus 441 ~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~llp~l~~~~~~-~~~~~R~~a~~~l~~l~~~~ 511 (588)
T 1b3u_A 441 KLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAH----ATIIPKVLAMSGD-PNYLHRMTTLFCINVLSEVC 511 (588)
T ss_dssp HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHH----HHTHHHHHHTTTC-SCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHH----HHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHhc
Confidence 45666666677777777777777777777777765532 3455555554432 34567776666666555444
No 96
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=34.61 E-value=80 Score=26.41 Aligned_cols=69 Identities=13% Similarity=0.094 Sum_probs=39.2
Q ss_pred HHHHHhcchhhhhHhhcccchH-HHHHHHhhcCCCHhHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHcCC
Q 014390 62 LEMLMNNIGDHIHKLVIDTGIL-PILVKIVKKKSDLPVRERIFLLLDATQTSLGGASGKFPQYYTAYYELVSAGV 135 (425)
Q Consensus 62 Le~~VkNCG~~Fh~eIas~~FL-~~L~klv~~k~~~~Vk~KiL~Ll~~W~~~~~~~~~~~~~i~~~Y~~Lk~~Gv 135 (425)
++.+..+-|..+....-.=.|- ++|..|-.. +...+++++.+||..|...-+. -..+..++.-|++-|.
T Consensus 9 f~~Ia~~lG~~Wk~LAR~LGlse~dId~Ie~~-~p~dl~eq~~~mL~~W~~r~G~----~ATv~~L~~AL~~i~~ 78 (122)
T 3ezq_B 9 FNVICDNVGKDWRRLARQLKVSDTKIDSIEDR-YPRNLTERVRESLRIWKNTEKE----NATVAHLVGALRSCQM 78 (122)
T ss_dssp HHHHHTTCCTTHHHHHHHTTCCHHHHHHHHHH-CSSCHHHHHHHHHHHHHHHCTT----TCCHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhhHHHHHHHhCCCHHHHHHHHHH-CCCCHHHHHHHHHHHHHHhhCC----CchHHHHHHHHHHCCC
Confidence 3444555554433332222444 333333333 2224999999999999976642 2346777777776553
No 97
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=32.79 E-value=99 Score=31.21 Aligned_cols=35 Identities=20% Similarity=0.360 Sum_probs=21.0
Q ss_pred cChHHHHHHHHHHhcCC-ccHHHHHHHHHHHh-CCCCH
Q 014390 17 VDWTKNIEICELVARDQ-RHAKDVIKAIKKRL-GSKNT 52 (425)
Q Consensus 17 ~Dw~~ileICD~In~~~-~~akeAvraIrKRL-~~~n~ 52 (425)
.+|+ +-+|+..|+++. +....|++++||-| +.+||
T Consensus 55 ~~~~-i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~p 91 (510)
T 3ul1_B 55 VNWS-VEDIVKGINSNNLESQLQATQAARKLLSREKQP 91 (510)
T ss_dssp SSCC-HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCC
T ss_pred hhhh-HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCc
Confidence 3453 566777777654 34567777777777 34454
No 98
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=31.56 E-value=98 Score=30.83 Aligned_cols=69 Identities=14% Similarity=0.116 Sum_probs=52.4
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHHHHHH
Q 014390 40 IKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDATQ 110 (425)
Q Consensus 40 vraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll~~W~ 110 (425)
+..|.+.|++.++.+|..|...|-.+..+. ......|.....+..|+++++. .++.|+......|..+.
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa 72 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRS-PNQNVQQAAAGALRNLV 72 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTS-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHh
Confidence 456777888899999999998888876433 3445578888899999999985 46778887777776554
No 99
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=30.87 E-value=1.4e+02 Score=27.49 Aligned_cols=69 Identities=12% Similarity=0.028 Sum_probs=50.6
Q ss_pred HHHHHHHhCCCCH--HHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHHHHHH
Q 014390 40 IKAIKKRLGSKNT--NVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDATQ 110 (425)
Q Consensus 40 vraIrKRL~~~n~--~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll~~W~ 110 (425)
+..|.+.|.+.++ .+|..|...|-.+..+. ......|....-+..|+.+++. .++.|++.....|..+.
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s-~~~~vq~~Aa~aL~nLa 80 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKV-QNEDVQRAVCGALRNLV 80 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHH
Confidence 5567778888888 88888776665554432 3445667777888999999976 46789998888887654
No 100
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=30.45 E-value=2.3e+02 Score=28.48 Aligned_cols=69 Identities=12% Similarity=0.117 Sum_probs=52.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHHHH
Q 014390 39 VIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDA 108 (425)
Q Consensus 39 AvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll~~ 108 (425)
++..|..-|.+++..++..|...|-.+..++...-...+.+...+.-|..++.. .|+.|+..++..|..
T Consensus 378 ~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~-~d~~i~~~~L~aL~n 446 (529)
T 3tpo_A 378 LVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA-KDTKIIQVILDAISN 446 (529)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcC-CCHHHHHHHHHHHHH
Confidence 456677778899999999998888777776655555567788899999999976 477888877776643
No 101
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=29.89 E-value=2.9e+02 Score=29.41 Aligned_cols=97 Identities=11% Similarity=0.065 Sum_probs=63.1
Q ss_pred CcChHHHHHHHHHHhcCCc--------cHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHH
Q 014390 16 DVDWTKNIEICELVARDQR--------HAKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILV 87 (425)
Q Consensus 16 ~~Dw~~ileICD~In~~~~--------~akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~ 87 (425)
+++|..-...+..+..=.. .-..++..|.+.|++.++.|...|...|..+...++...+..+ -..++..|.
T Consensus 370 ~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~-~~~ll~~L~ 448 (852)
T 4fdd_A 370 HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY-LKPLMTELL 448 (852)
T ss_dssp CSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTT-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHH-HHHHHHHHH
Confidence 4567655444444332211 2356788899999999999999888888877776655332222 124555566
Q ss_pred HHhhcCCCHhHHHHHHHHHHHHHHhhc
Q 014390 88 KIVKKKSDLPVRERIFLLLDATQTSLG 114 (425)
Q Consensus 88 klv~~k~~~~Vk~KiL~Ll~~W~~~~~ 114 (425)
+.+.+ .++.||..+...|.......+
T Consensus 449 ~~L~d-~~~~vr~~a~~aL~~l~~~~~ 474 (852)
T 4fdd_A 449 KRILD-SNKRVQEAACSAFATLEEEAC 474 (852)
T ss_dssp HHHTC-SSHHHHHHHHHHHHHHHHHHG
T ss_pred HHHhC-CCHHHHHHHHHHHHHHHHHhh
Confidence 66554 467899999888877766553
No 102
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=29.26 E-value=2.5e+02 Score=28.79 Aligned_cols=65 Identities=12% Similarity=0.216 Sum_probs=44.6
Q ss_pred CCCCCCcChHHHHHHHHHHhc-------CCccHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHHHhcchhhhhH
Q 014390 11 SEKLADVDWTKNIEICELVAR-------DQRHAKDVIKAIKK---RLGSKNTNVQLYAVMLLEMLMNNIGDHIHK 75 (425)
Q Consensus 11 se~l~~~Dw~~ileICD~In~-------~~~~akeAvraIrK---RL~~~n~~vql~AL~LLe~~VkNCG~~Fh~ 75 (425)
...+...|++...+.|-.|.. +++..+.++..+.. .|.++++++++.||..|..+++.....|..
T Consensus 245 ~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~ 319 (591)
T 2vgl_B 245 TPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQ 319 (591)
T ss_dssp TTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTT
T ss_pred HHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHH
Confidence 345677889999998888765 22344433333332 566789999999999999888876555543
No 103
>2lo0_A Uncharacterized protein; dimerization, homodimerization, protein binding; NMR {Aspergillus fumigatus}
Probab=29.10 E-value=39 Score=26.29 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=33.4
Q ss_pred hhhhhHhhcccchHHHHHHHhhcC-CCHhHHHHHHHHHH-HHHHh
Q 014390 70 GDHIHKLVIDTGILPILVKIVKKK-SDLPVRERIFLLLD-ATQTS 112 (425)
Q Consensus 70 G~~Fh~eIas~~FL~~L~klv~~k-~~~~Vk~KiL~Ll~-~W~~~ 112 (425)
|..++..+.+.+|.+.|...+..+ .|+..-.++..++. +|..+
T Consensus 30 g~sg~~vl~TeeFW~DL~gFL~qRlkDe~~A~~l~siFk~AW~ss 74 (75)
T 2lo0_A 30 GPSGESVVATEAFWDDLQGFLEQRLKDYDEANKLRVLFKEAWRSS 74 (75)
T ss_dssp -CCSSTTTTSHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhc
Confidence 447788899999999999888754 57778888888875 48753
No 104
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=27.91 E-value=56 Score=26.97 Aligned_cols=72 Identities=13% Similarity=0.021 Sum_probs=43.6
Q ss_pred HHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHcCC
Q 014390 61 LLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDATQTSLGGASGKFPQYYTAYYELVSAGV 135 (425)
Q Consensus 61 LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll~~W~~~~~~~~~~~~~i~~~Y~~Lk~~Gv 135 (425)
.|..+.++-|..+......-.|-+.=+..+.....-.+++++..+|..|...-++ .-..+..+++.|++-|.
T Consensus 15 ~l~~ia~~lg~dWk~LAr~Lg~s~~~I~~I~~~~~~~l~eq~~~mL~~W~~~~g~---~~Atv~~L~~aL~~~~r 86 (118)
T 2of5_H 15 NLLSVAGRLGLDWPAVALHLGVSYREVQRIRHEFRDDLDEQIRHMLFSWAERQAG---QPGAVGLLVQALEQSDR 86 (118)
T ss_dssp HHHHHHHTCCTTHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHTTSS---CSSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhHHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhccCC---CCcHHHHHHHHHHHcCc
Confidence 4555566666655333333345533333343333345899999999999986533 23557788888877664
No 105
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=26.81 E-value=93 Score=25.17 Aligned_cols=37 Identities=22% Similarity=0.081 Sum_probs=27.3
Q ss_pred CHhHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHcCC
Q 014390 95 DLPVRERIFLLLDATQTSLGGASGKFPQYYTAYYELVSAGV 135 (425)
Q Consensus 95 ~~~Vk~KiL~Ll~~W~~~~~~~~~~~~~i~~~Y~~Lk~~Gv 135 (425)
...+++++.+||..|...-+. -..+..+++.|++-|.
T Consensus 53 ~~~~~eq~~~mL~~W~~r~G~----~AT~~~L~~AL~~~~~ 89 (110)
T 1wxp_A 53 SEDMKMRAKQLLVAWQDQEGV----HATPENLINALNKSGL 89 (110)
T ss_dssp CSSHHHHHHHHHHHHHHHHGG----GCCHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHhhCc----CcHHHHHHHHHHHcCc
Confidence 346899999999999976632 2346777788877664
No 106
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=26.51 E-value=1.6e+02 Score=28.07 Aligned_cols=69 Identities=19% Similarity=0.159 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHHHHH
Q 014390 36 AKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDAT 109 (425)
Q Consensus 36 akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll~~W 109 (425)
.+..+..|-.=|.++|+.++..||++|=.+..-.|.+=+. ...++++..+++.. |+.++++.|..+..-
T Consensus 148 ~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~----~~I~~eI~elL~~e-D~~l~e~aLd~Le~i 216 (265)
T 3b2a_A 148 SKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHL----TLILDEIPSLLQND-NEFIVELALDVLEKA 216 (265)
T ss_dssp CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCG----GGTTTTHHHHHTCS-CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHH----HHHHHHHHHHHcCC-CHHHHHHHHHHHHHH
Confidence 5566666666778999999999998776554433322111 35567788888876 899999999988643
No 107
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=26.37 E-value=60 Score=26.46 Aligned_cols=21 Identities=24% Similarity=0.132 Sum_probs=18.5
Q ss_pred CCHhHHHHHHHHHHHHHHhhc
Q 014390 94 SDLPVRERIFLLLDATQTSLG 114 (425)
Q Consensus 94 ~~~~Vk~KiL~Ll~~W~~~~~ 114 (425)
.++.|+..+..||..|.....
T Consensus 67 ~~~~V~~lAk~Lv~~WK~~v~ 87 (103)
T 1wjt_A 67 SDKEVVSLAKVLIKNWKRLLD 87 (103)
T ss_dssp CCSHHHHHHHHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999998773
No 108
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=26.21 E-value=1.3e+02 Score=24.21 Aligned_cols=36 Identities=19% Similarity=0.071 Sum_probs=27.7
Q ss_pred HhHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHcCC
Q 014390 96 LPVRERIFLLLDATQTSLGGASGKFPQYYTAYYELVSAGV 135 (425)
Q Consensus 96 ~~Vk~KiL~Ll~~W~~~~~~~~~~~~~i~~~Y~~Lk~~Gv 135 (425)
..+++++..+|..|...-+. -..+..++..|++-|.
T Consensus 55 ~~~~eq~~~mL~~W~~~~g~----~AT~~~L~~aL~~i~r 90 (111)
T 2yqf_A 55 NSLLEQSVALLNLWVIREGQ----NANMENLYTALQSIDR 90 (111)
T ss_dssp SCHHHHHHHHHHHHHHHHTT----SCCHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHhhCC----CchHHHHHHHHHHcCc
Confidence 46999999999999987632 2457788888887664
No 109
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=24.75 E-value=3.7e+02 Score=23.87 Aligned_cols=59 Identities=19% Similarity=0.336 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHHH
Q 014390 36 AKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLD 107 (425)
Q Consensus 36 akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll~ 107 (425)
...++..|.+.|++.++.+...|+..|-. . ++...+..|..++.+ .++.||..++..|.
T Consensus 126 ~~~~~~~L~~~l~d~~~~vR~~a~~aL~~----~--------~~~~~~~~L~~~l~d-~~~~vr~~a~~aL~ 184 (280)
T 1oyz_A 126 SPKIVEQSQITAFDKSTNVRRATAFAISV----I--------NDKATIPLLINLLKD-PNGDVRNWAAFAIN 184 (280)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHT----C-----------CCHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhCCCHHHHHHHHHHHHh----c--------CCHHHHHHHHHHHcC-CCHHHHHHHHHHHH
Confidence 45677777777888888887777765532 2 223567777777664 45667777766653
No 110
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=24.69 E-value=1.5e+02 Score=30.55 Aligned_cols=72 Identities=17% Similarity=0.200 Sum_probs=51.4
Q ss_pred CccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHHHHH
Q 014390 33 QRHAKDVIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDAT 109 (425)
Q Consensus 33 ~~~akeAvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll~~W 109 (425)
++-....+..|++-|.+.++.|...|...|-.+.+.+...+ -...|++.|..++.+ .++.|+.-++.+|...
T Consensus 116 ~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~----~~~~~~~~l~~lL~d-~d~~V~~~A~~aL~~i 187 (591)
T 2vgl_B 116 DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV----EDQGFLDSLRDLIAD-SNPMVVANAVAALSEI 187 (591)
T ss_dssp GGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH----HHHHHHHHHHHTTSC-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc----ccccHHHHHHHHhCC-CChhHHHHHHHHHHHH
Confidence 33456667778888889999998888877777766543322 224688899998875 4678888887777654
No 111
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=22.99 E-value=3.5e+02 Score=25.31 Aligned_cols=84 Identities=13% Similarity=0.160 Sum_probs=52.4
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHhcchhhhhHhhc------------ccchHHH
Q 014390 22 NIEICELVARDQRHAKDVIKAIKKRLG----SKNTNVQLYAVMLLEMLMNNIGDHIHKLVI------------DTGILPI 85 (425)
Q Consensus 22 ileICD~In~~~~~akeAvraIrKRL~----~~n~~vql~AL~LLe~~VkNCG~~Fh~eIa------------s~~FL~~ 85 (425)
+.=||++.+.+--..+.+...|++-|+ ..+.. .+..|=.++++||..+...-. =..+.+.
T Consensus 177 i~FIgeLyk~~~l~~~i~~~ci~~LL~~~~~~p~e~----~iE~l~~lL~tvG~~Ld~~~~~~~~~~~~~~~~md~~f~~ 252 (284)
T 2vso_E 177 VRFIGFLYRLNLLTGKMMFECFRRLMKDLTDSPSEE----TLESVVELLNTVGEQFETDSFRTGQATLEGSQLLDSLFGI 252 (284)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHSCCCHH----HHHHHHHHHHHHHHHHTSCC--------CHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHhccCCCCCCHH----HHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHH
Confidence 445788888876666665555555554 44433 566667777888998765431 1234455
Q ss_pred HHHHhhc-CCCHhHHHHHHHHHHHH
Q 014390 86 LVKIVKK-KSDLPVRERIFLLLDAT 109 (425)
Q Consensus 86 L~klv~~-k~~~~Vk~KiL~Ll~~W 109 (425)
|..++.. +.+..||--|..+++.-
T Consensus 253 l~~l~~~~~ls~RirFml~dlidLR 277 (284)
T 2vso_E 253 LDNIIQTAKISSRIKFKLIDIKELR 277 (284)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 6666543 46677888777777543
No 112
>3ayh_A DNA-directed RNA polymerase III subunit RPC9; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=22.82 E-value=1.3e+02 Score=25.46 Aligned_cols=55 Identities=11% Similarity=0.097 Sum_probs=38.9
Q ss_pred HHHHHHHHHhcCCccH---HHHHHHHHHHhCCC----CHHHHHH-----HHHHHHHHHhcchhhhhH
Q 014390 21 KNIEICELVARDQRHA---KDVIKAIKKRLGSK----NTNVQLY-----AVMLLEMLMNNIGDHIHK 75 (425)
Q Consensus 21 ~ileICD~In~~~~~a---keAvraIrKRL~~~----n~~vql~-----AL~LLe~~VkNCG~~Fh~ 75 (425)
...++.+.+...+... .++++.+.++|+.- ....|+. ++..|..+|..|..+|-.
T Consensus 55 i~~e~l~YL~~~p~~~~q~~e~i~~l~~~L~~~~Ltk~E~LqivNl~P~t~vel~~iIEe~e~Rfse 121 (136)
T 3ayh_A 55 IQFEILKYLSSQGNCEGLTKERFLDCIAIFNEFELTKAEILVILNNKPSSVPELYACIEGIEERFKE 121 (136)
T ss_dssp HHHHHHHHHHTTTCCTTCCHHHHHHHHHTTTTTCCCHHHHHHHHHHCCCSHHHHHHHSTTHHHHHTT
T ss_pred HHHHHHHHHHhCCCccccCHHHHHHHHHHHHhcCCCHHHHHHHhccCCCCHHHHHHHHHhcccCCCH
Confidence 3456888888876554 89999999999632 2444444 335588899999888763
No 113
>1o5h_A Formiminotetrahydrofolate cyclodeaminase; TM1560, structural genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 2.80A {Thermotoga maritima} SCOP: a.191.1.1
Probab=21.41 E-value=2.2e+02 Score=26.13 Aligned_cols=41 Identities=10% Similarity=0.105 Sum_probs=32.9
Q ss_pred HHHHHHHhhCCCCCCC-CcchHHHHHHHHHHHHHHHHHHHhh
Q 014390 197 VLKDVLDAVGTQNPEG-AKDEFTLDLVEQCSFQKQRVMHLVM 237 (425)
Q Consensus 197 LL~EML~~~~p~~~~~-~d~Eli~EL~~~Cr~~q~rI~~lI~ 237 (425)
-|..|..++.-+...- .-.+.+.++.+.|..++.+++.|+.
T Consensus 49 AL~~MVanLT~gKkky~~~e~~~~~i~~~~~~l~~~ll~l~d 90 (214)
T 1o5h_A 49 ALAEMVANFTRKKKGYEDVEPEMERIVEAMEEARLKLFDLAK 90 (214)
T ss_dssp HHHHHHHHTTTTCTTCGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888887776543 3356799999999999999999986
No 114
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=20.97 E-value=1.8e+02 Score=23.08 Aligned_cols=56 Identities=14% Similarity=0.176 Sum_probs=41.9
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCCCHhHHHHHHHHHHH
Q 014390 40 IKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKSDLPVRERIFLLLDA 108 (425)
Q Consensus 40 vraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~~~~Vk~KiL~Ll~~ 108 (425)
+..|.+.|++.++.+...|+..|-.+ ++...+..|.+++.+ .++.||..+...|..
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~------------~~~~a~~~L~~~L~d-~~~~VR~~A~~aL~~ 99 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNF------------QDERAVEPLIKLLED-DSGFVRSGAARSLEQ 99 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGG------------CSHHHHHHHHHHHHH-CCTHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhc------------CCHHHHHHHHHHHcC-CCHHHHHHHHHHHHH
Confidence 58888899999999999888776432 234567788888865 467899888776653
No 115
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=20.27 E-value=2.7e+02 Score=31.06 Aligned_cols=73 Identities=15% Similarity=0.231 Sum_probs=52.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcchhhhhHhhcccchHHHHHHHhhcCC-CHhHHHHHHHHHHHHHHhh
Q 014390 39 VIKAIKKRLGSKNTNVQLYAVMLLEMLMNNIGDHIHKLVIDTGILPILVKIVKKKS-DLPVRERIFLLLDATQTSL 113 (425)
Q Consensus 39 AvraIrKRL~~~n~~vql~AL~LLe~~VkNCG~~Fh~eIas~~FL~~L~klv~~k~-~~~Vk~KiL~Ll~~W~~~~ 113 (425)
.+.+|.+.|++.++.+...++.+|..+++.|+..+...+ ..++..+..++.++. ...|+..++..+..|...+
T Consensus 435 ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l--~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~ 508 (1230)
T 1u6g_C 435 IVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI--PVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNH 508 (1230)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH--HHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH--HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhC
Confidence 445566778999999999999999999999876553221 456677777777543 3578888888888776543
Done!