Query 014391
Match_columns 425
No_of_seqs 234 out of 348
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 04:40:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014391.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014391hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2502 Tub family proteins [G 100.0 2E-129 4E-134 966.4 28.5 354 1-425 1-355 (355)
2 PF01167 Tub: Tub family; Int 100.0 9.5E-85 2.1E-89 628.6 17.7 246 117-419 1-246 (246)
3 KOG2503 Tubby superfamily prot 99.8 3.6E-19 7.7E-24 184.3 4.5 79 325-421 485-563 (565)
4 PF12937 F-box-like: F-box-lik 97.6 2E-05 4.4E-10 57.4 1.3 36 53-96 1-36 (47)
5 PF00646 F-box: F-box domain; 97.5 1.6E-05 3.4E-10 57.6 -0.5 39 52-98 2-40 (48)
6 smart00256 FBOX A Receptor for 96.7 0.00041 8.9E-09 47.9 -0.0 33 56-96 1-33 (41)
7 PLN03215 ascorbic acid mannose 96.6 0.0012 2.7E-08 68.5 3.1 40 51-97 2-41 (373)
8 PF12043 DUF3527: Domain of un 96.4 0.0039 8.5E-08 64.2 4.9 58 349-420 287-344 (346)
9 KOG2997 F-box protein FBX9 [Ge 94.7 0.044 9.6E-07 56.3 5.0 43 50-95 101-146 (366)
10 KOG2120 SCF ubiquitin ligase, 48.5 5.5 0.00012 41.5 -0.2 66 53-126 98-166 (419)
11 PF11038 DGF-1_5: Dispersed ge 39.1 1.1E+02 0.0024 30.1 7.0 54 73-135 15-74 (278)
12 PF12043 DUF3527: Domain of un 34.6 2.2E+02 0.0047 30.1 8.8 72 121-203 6-108 (346)
13 PF04525 Tub_2: Tubby C 2; In 33.2 1.3E+02 0.0028 27.9 6.4 79 121-203 61-144 (187)
14 PF11922 DUF3440: Domain of un 25.4 70 0.0015 30.8 3.1 22 89-110 150-171 (181)
No 1
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=100.00 E-value=1.7e-129 Score=966.41 Aligned_cols=354 Identities=57% Similarity=0.888 Sum_probs=308.8
Q ss_pred CcchhhhhhhhcccCccccccceeeecccCCCccCCCCCcccccccccccCccCCCChHHHHHHHHHhhhcCCCCCCccc
Q 014391 1 MSFRSIVRDVRDSFGSLSRRSFDFRLTGHHGGKSHGSSNDLHDQNIVIQNSCWASLPPELLCDVIKRLEESESSWPARKH 80 (425)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~lppell~dv~~r~e~se~~wp~r~~ 80 (425)
|+++++++++++.. +++.+....+++. +..+++... +.....+.|++||||||+|+|+|+||+|+.||+|++
T Consensus 1 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~-~s~~~~~~~~~l~~~~L~d~~~r~eese~~wp~r~~ 72 (355)
T KOG2502|consen 1 MGEDGPVRDPEDKS------SFRAPQGSGTKGP-EDKSEDSGF-PSPSDQSLWAALPPELLSDVLKRDEESEDTWPSRRN 72 (355)
T ss_pred CCccCccCCCCccc------chhcccccccccC-CCccCCcCC-ccccccchhhcCCHhHHHHHhhhccccccccccccc
Confidence 88999999998877 5555544323322 333333211 111122899999999999999999999999999999
Q ss_pred eeeccccchhHHHHHHHhhcCCcccccccccccccCCCCCCceEEEEEEEecCCceEEEEeeccccccc-cCceEEEEEE
Q 014391 81 VVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVSLKQPGARDGTIQCFIKRDKSNLTYHLFLCLSPALLV-ENGKFLLSAK 159 (425)
Q Consensus 81 vvaca~vc~~wr~~~keiv~~pe~~g~ltfpisLkqPgPrd~~iQCfIkR~K~~~tY~LYL~l~~~~~~-e~gKfLLaAr 159 (425)
||+||+||+.||++++|||+.||.+|++|||++|+||||+|.++||+|+|||+|++|+||+++.++.+. |++|||||||
T Consensus 73 vvs~~~~~~~~r~~~~~~v~~~~~~~k~~~~~~l~qP~P~~~~~qC~I~Rdks~~~~~Ly~~l~~~l~~~d~~kfLLaar 152 (355)
T KOG2502|consen 73 VVSCAGVCDKWREISKEIVAPPEPSSKLTFPASLKQPGPRGVLVQCYIKRDKSGMDRGLYLSLYLHLEREDNKKFLLAAR 152 (355)
T ss_pred cccccchhhhhhhhccccccCCccccccchhHHhcCCCCCCceEEEEEEEccCCCceeeeecccccccccccceeeeeee
Confidence 999999999999999999999999999999999999999999999999999999999999999886554 6799999999
Q ss_pred eeccCCceeEEEEccCCCcccCCCceeeEeeeceeecEEEEecCCCCCCCCCCCCCCCCcccccccccCCCCCCCceeeE
Q 014391 160 RTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPHTSANITPSGCTSRRFYSKKVSPKVPSGSYNIA 239 (425)
Q Consensus 160 K~rr~t~S~YiISld~ddlSr~S~~yVGKLRSNflGTkFtIYD~gpp~~~a~~~~~~r~srr~~sk~vsp~vp~~~~eva 239 (425)
|+||+||+|||||+|++||||++++||||||||||||||||||+|. +.+|+++ ++|+++|+||
T Consensus 153 k~rr~~~t~yiiS~d~~~lSr~~~~yvGklRSN~lGTKFtVyD~g~-----------~~~r~~~------~~~~~~~~la 215 (355)
T KOG2502|consen 153 KRRRSKTTNYLISLDPTDLSRGSESYVGKLRSNLLGTKFTVYDNGV-----------NPSRRFN------KVPSGRQELA 215 (355)
T ss_pred eecccccceeEEeccccccccCccceeeeeecccccceEEEecCCC-----------Ccccccc------cCCcccceee
Confidence 9999999999999999999999999999999999999999999974 2234544 6899999999
Q ss_pred EEEEeeeccCcCCCceeEEeecCCCcccccCCCCCCCCCcccCCcccccccccccccCCCcccccccccccccccccccc
Q 014391 240 QIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRSISFSKSLDHSVDFSSARFSEIGALREDD 319 (425)
Q Consensus 240 ~V~Ye~NvLg~rGPRrM~cim~~IP~~~~~~gg~~P~q~~~~~~~~~~sf~~~~~~k~~~~~~~~~s~r~~~~~~~~~~~ 319 (425)
+|+||+||||+||||||+|+|++||.++ ++|++|.|++..... ..|+ .+
T Consensus 216 ~V~Ye~NVLg~rGPRrM~~im~~i~~s~--~~~~v~~q~~~~~~~--~l~r------------------~~--------- 264 (355)
T KOG2502|consen 216 AVIYETNVLGFRGPRRMTVIMPGISPSA--PGGRVPVQPENDHPS--LLFR------------------SQ--------- 264 (355)
T ss_pred EEEEeeccccccCCceeEEeccCCCCCC--CCCcccccccccccc--hhhh------------------cc---------
Confidence 9999999999999999999999999987 899999999732111 1111 11
Q ss_pred cCCCcccEEeccCCCcccccccceEeecCCeeeccccceeEEEeccCCCCCCCCCCCCCCCCCCcEEEEeeccCCCeeEE
Q 014391 320 EDGKLRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPAPPEHDKIILQFGKVGKDMFTM 399 (425)
Q Consensus 320 ~~~~~~~lvL~nK~P~w~e~lq~y~LnF~GRVt~aSVKNFQLv~~~~~~~g~~~~~~~~~~~~~~iiLQFGKv~kd~Ftm 399 (425)
.+.++++++|+||.|+|||++||||||||||||+||||||||||+ .++++|||||||||||+|||
T Consensus 265 ~k~~e~~lvL~NK~P~wne~~q~~~LNF~GRVT~ASVKNFQLv~~---------------~~p~~iiLQFGrV~kD~FTm 329 (355)
T KOG2502|consen 265 NKDKEGLLVLKNKTPRWNEETQSYCLNFHGRVTQASVKNFQLVHA---------------LDPEYIILQFGRVGKDVFTM 329 (355)
T ss_pred ccCcccceEeecCCCccccccceEEEecCCeEEEeeecceEEecc---------------CCCCEEEEEeeeeccceeee
Confidence 124689999999999999999999999999999999999999993 35699999999999999999
Q ss_pred EccCCCCHHHHHHHHHHcCccccccC
Q 014391 400 DYRYPLSAFQAFAICLSSFDTKLACE 425 (425)
Q Consensus 400 D~ryPlS~~QAFaI~LsSfdtKlACE 425 (425)
||||||||||||||||||||+|||||
T Consensus 330 DYrYPlSa~QAFaIcLSSFdtKlaCe 355 (355)
T KOG2502|consen 330 DYRYPLSAFQAFAICLSSFDTKLACE 355 (355)
T ss_pred cccCccHHHHHHHHHHHhccccccCC
Confidence 99999999999999999999999998
No 2
>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function. This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.
Probab=100.00 E-value=9.5e-85 Score=628.64 Aligned_cols=246 Identities=55% Similarity=0.925 Sum_probs=183.7
Q ss_pred CCCCCceEEEEEEEecCCceEEEEeeccccccccCceEEEEEEeeccCCceeEEEEccCCCcccCCCceeeEeeeceeec
Q 014391 117 PGARDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGT 196 (425)
Q Consensus 117 PgPrd~~iQCfIkR~K~~~tY~LYL~l~~~~~~e~gKfLLaArK~rr~t~S~YiISld~ddlSr~S~~yVGKLRSNflGT 196 (425)
|||+|++|||+|+|||+|++|+||+.+....+.|+|||||||||++++++|||||||+++|+||++++|||||||||+||
T Consensus 1 P~P~~~~vqC~I~R~k~g~~~~lyp~y~l~l~~~~~kfLLaArK~~~s~~s~YiIS~~~~dlsr~s~~yvGKLrsNf~GT 80 (246)
T PF01167_consen 1 PGPRGGPVQCFIRRDKSGLTRGLYPGYYLYLEGENGKFLLAARKRKRSKTSNYIISLDPDDLSRSSNNYVGKLRSNFLGT 80 (246)
T ss_dssp B--TT-EEEEEEEEESTTCCCT---EEEEEEESTTSEEEEEEEEECSSSSEEEEEESSHHHHCTT---ESEEEEE-TTSS
T ss_pred CCCCCcEEEEEEEEECCCCCcccCcEeEeccccCCCcEEEeeeecccCCCcceEEecCCCccccCCCceeeeecccccee
Confidence 89999999999999999986655555444334588999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCCCCCCCCcccccccccCCCCCCCceeeEEEEEeeeccCcCCCceeEEeecCCCcccccCCCCCCC
Q 014391 197 KFIIYDTQPPHTSANITPSGCTSRRFYSKKVSPKVPSGSYNIAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPG 276 (425)
Q Consensus 197 kFtIYD~gpp~~~a~~~~~~r~srr~~sk~vsp~vp~~~~eva~V~Ye~NvLg~rGPRrM~cim~~IP~~~~~~gg~~P~ 276 (425)
+|+|||+|++++.+.. .+|..+..++|||+|.||+||||+||||||+|+|++|+....++++.+|.
T Consensus 81 ~F~iyD~g~~~~~~~~--------------~~~~~~~~r~eLa~V~Ye~nvlg~rGPRkM~v~ip~i~~~~~~~~~~~~~ 146 (246)
T PF01167_consen 81 EFTIYDNGPNPKKSKS--------------ISPREPQIRRELAAVSYETNVLGSRGPRKMTVVIPSIPSSGQESGGRVPF 146 (246)
T ss_dssp EEEEEESSB-CCCSTC--------------CTSCCSSB--EEEEEEEEE-SSSTTSSEEEEEEEE-B-TTS-----B---
T ss_pred EEEEECCCCCCccccc--------------cCcCcCcCcceEEEEEEEeccccccCCcEEEEEecCCCccccccceeeee
Confidence 9999999987765432 25667788999999999999999999999999999999887777777766
Q ss_pred CCcccCCcccccccccccccCCCcccccccccccccccccccccCCCcccEEeccCCCcccccccceEeecCCeeecccc
Q 014391 277 QPELLPRSLEDSFRSISFSKSLDHSVDFSSARFSEIGALREDDEDGKLRPLILKNKPPRWHEQLQCWCLNFRGRVTVASV 356 (425)
Q Consensus 277 q~~~~~~~~~~sf~~~~~~k~~~~~~~~~s~r~~~~~~~~~~~~~~~~~~lvL~nK~P~w~e~lq~y~LnF~GRVt~aSV 356 (425)
++... ..++. ..+ . .....+++++|+||.|+||++++||||||+||||+|||
T Consensus 147 ~p~~~---~~~~~-----------~~~-----~---------~~~~~~~~~~l~~k~P~w~~~~~~~~l~F~gRv~~~Sv 198 (246)
T PF01167_consen 147 QPLNQ---EKDSL-----------LSR-----F---------QNKKKDELIVLKNKPPRWNEELQSYVLNFNGRVTVASV 198 (246)
T ss_dssp --SS----CCCSH-----------HHH-----H---------HCT-TTSEEEEEE---EEETTTTEEEEEETTSECC-BT
T ss_pred ecccc---ccccc-----------ccc-----c---------cccCCcceEEEecCCCcEeccCCeEEeccCCeEecccc
Confidence 54200 00000 000 0 12356789999999999999999999999999999999
Q ss_pred ceeEEEeccCCCCCCCCCCCCCCCCCCcEEEEeeccCCCeeEEEccCCCCHHHHHHHHHHcCc
Q 014391 357 KNFQLIAATQPAAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFD 419 (425)
Q Consensus 357 KNFQLv~~~~~~~g~~~~~~~~~~~~~~iiLQFGKv~kd~FtmD~ryPlS~~QAFaI~LsSfd 419 (425)
||||||+. ++++++|||||||++|+|+|||+|||||+|||||||||||
T Consensus 199 KNFql~~~---------------~~~~~~~lqfGk~~~~~f~~d~~~Pls~~qAF~i~lssfd 246 (246)
T PF01167_consen 199 KNFQLVHP---------------SDPDRIVLQFGKVGKDVFTMDFRYPLSPLQAFAIALSSFD 246 (246)
T ss_dssp TEEEEEBT---------------TBTTSESEEEEEEETTEEEEEEETT-BHHHHHHHHHHHHH
T ss_pred ceeEEEcc---------------CCCCeEEEEEEEecCCEEEEEecCCCCHHHHHHHHHhcCC
Confidence 99999983 5688999999999999999999999999999999999997
No 3
>KOG2503 consensus Tubby superfamily protein TULP4 [General function prediction only]
Probab=99.75 E-value=3.6e-19 Score=184.27 Aligned_cols=79 Identities=43% Similarity=0.792 Sum_probs=71.9
Q ss_pred ccEEeccCCCcccccccceEeecCCeeeccccceeEEEeccCCCCCCCCCCCCCCCCCCcEEEEeeccCCCeeEEEccCC
Q 014391 325 RPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYP 404 (425)
Q Consensus 325 ~~lvL~nK~P~w~e~lq~y~LnF~GRVt~aSVKNFQLv~~~~~~~g~~~~~~~~~~~~~~iiLQFGKv~kd~FtmD~ryP 404 (425)
+..++.||+|-|||+.|-|+|||.||||+.|.||||+-. ..+-|||||+|+.+.|++||+||
T Consensus 485 R~~vmtnK~p~wne~tqVyqlDfgGrVtqesakNfQIel------------------~gkQvmqFgRidg~aytldfqyp 546 (565)
T KOG2503|consen 485 RCEVMTNKPPAWNEHTQVYQLDFGGRVTQESAKNFQIEL------------------FGKQVMQFGRIDGPAYTLDFQYP 546 (565)
T ss_pred eEEEeecCCccccccceEEEeccCCccchhhhccceEee------------------cchhhheeccccCCcccCCCCCc
Confidence 446999999999999999999999999999999999975 24458999999999999999999
Q ss_pred CCHHHHHHHHHHcCccc
Q 014391 405 LSAFQAFAICLSSFDTK 421 (425)
Q Consensus 405 lS~~QAFaI~LsSfdtK 421 (425)
+|+.||||.||++.-..
T Consensus 547 fSa~QaFavalanvtqR 563 (565)
T KOG2503|consen 547 FSAGQAFAVALANVTQR 563 (565)
T ss_pred hHHHHHHHHHHhhhhhh
Confidence 99999999999986443
No 4
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=97.63 E-value=2e-05 Score=57.43 Aligned_cols=36 Identities=31% Similarity=0.701 Sum_probs=30.5
Q ss_pred cCCCChHHHHHHHHHhhhcCCCCCCccceeeccccchhHHHHHH
Q 014391 53 WASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCK 96 (425)
Q Consensus 53 w~~lppell~dv~~r~e~se~~wp~r~~vvaca~vc~~wr~~~k 96 (425)
|..||+|+|.+|+..++.. ++..|+.|||.|++++.
T Consensus 1 i~~LP~Eil~~If~~L~~~--------dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPR--------DLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HH--------HHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcCCHH--------HHHHHHHHHHHHHHHHC
Confidence 7899999999999888654 79999999999999873
No 5
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=97.53 E-value=1.6e-05 Score=57.65 Aligned_cols=39 Identities=21% Similarity=0.502 Sum_probs=32.1
Q ss_pred ccCCCChHHHHHHHHHhhhcCCCCCCccceeeccccchhHHHHHHHh
Q 014391 52 CWASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKEI 98 (425)
Q Consensus 52 ~w~~lppell~dv~~r~e~se~~wp~r~~vvaca~vc~~wr~~~kei 98 (425)
.|.+||+|++.+|+.+++-. ++++|+.||+.|+.++++.
T Consensus 2 ~~~~LP~~il~~Il~~l~~~--------~~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPK--------DLLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HH--------HHHHHCTT-HHHHHHHTTH
T ss_pred CHHHCCHHHHHHHHHHCcHH--------HHHHHHHHhhHHHHHHcCC
Confidence 48899999999999999986 4999999999999988654
No 6
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=96.69 E-value=0.00041 Score=47.89 Aligned_cols=33 Identities=30% Similarity=0.677 Sum_probs=29.3
Q ss_pred CChHHHHHHHHHhhhcCCCCCCccceeeccccchhHHHHHH
Q 014391 56 LPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCK 96 (425)
Q Consensus 56 lppell~dv~~r~e~se~~wp~r~~vvaca~vc~~wr~~~k 96 (425)
||+|++.+|+.+++. +++.+|+.||+.|+.+++
T Consensus 1 lP~~ll~~I~~~l~~--------~d~~~~~~vc~~~~~~~~ 33 (41)
T smart00256 1 LPDEILEEILSKLPP--------KDLLRLRKVSRRWRSLID 33 (41)
T ss_pred CCHHHHHHHHHcCCH--------HHHHHHHHHHHHHHHHhc
Confidence 799999999998863 588999999999998875
No 7
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=96.64 E-value=0.0012 Score=68.46 Aligned_cols=40 Identities=33% Similarity=0.649 Sum_probs=34.4
Q ss_pred CccCCCChHHHHHHHHHhhhcCCCCCCccceeeccccchhHHHHHHH
Q 014391 51 SCWASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKE 97 (425)
Q Consensus 51 ~~w~~lppell~dv~~r~e~se~~wp~r~~vvaca~vc~~wr~~~ke 97 (425)
..|+.||+|||+.|..|+. .+-+++-=++||++||..+..
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~-------~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLF-------SNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred CChhhCCHHHHHHHHhhCC-------cHHHHHHHHhhhhhHHHhccc
Confidence 3699999999999999994 456888899999999997653
No 8
>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain has a conserved CDCGGWD sequence motif.
Probab=96.40 E-value=0.0039 Score=64.18 Aligned_cols=58 Identities=19% Similarity=0.466 Sum_probs=46.4
Q ss_pred CeeeccccceeEEEeccCCCCCCCCCCCCCCCCCCcEEEEeeccCCCeeEEEccCCCCHHHHHHHHHHcCcc
Q 014391 349 GRVTVASVKNFQLIAATQPAAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDT 420 (425)
Q Consensus 349 GRVt~aSVKNFQLv~~~~~~~g~~~~~~~~~~~~~~iiLQFGKv~kd~FtmD~ryPlS~~QAFaI~LsSfdt 420 (425)
.+.+.+.-+=|.|.... ..++..+|-+--+.++.|.+||+-.||++|||+||++-.++
T Consensus 287 ~~~~~~~~~~feLf~QG--------------~~~~~P~~sm~~v~~G~Y~V~F~s~lS~LQAFSiciA~lh~ 344 (346)
T PF12043_consen 287 SSSSKESSHPFELFVQG--------------SKEEDPAFSMVNVKEGLYSVEFHSSLSPLQAFSICIAVLHS 344 (346)
T ss_pred cccccccCCceeeeecc--------------cccCCCceEEEEccCCeEEEEecCcchHHHHHHHhheeeec
Confidence 45556677789997621 23333899999999999999999999999999999987654
No 9
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=94.70 E-value=0.044 Score=56.27 Aligned_cols=43 Identities=21% Similarity=0.308 Sum_probs=33.3
Q ss_pred cCccCC---CChHHHHHHHHHhhhcCCCCCCccceeeccccchhHHHHH
Q 014391 50 NSCWAS---LPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMC 95 (425)
Q Consensus 50 ~~~w~~---lppell~dv~~r~e~se~~wp~r~~vvaca~vc~~wr~~~ 95 (425)
|++|-+ ||+|+|..|+++|=.+-- +-++.+.||+||+.|+-.+
T Consensus 101 qp~~~~~~~LPdEvLm~I~~~vv~~~~---d~rsL~~~s~vCr~F~~~~ 146 (366)
T KOG2997|consen 101 QPELISISVLPDEVLMRIFRWVVSSLL---DLRSLEQLSLVCRGFYKCA 146 (366)
T ss_pred chhhhhhhhCCHHHHHHHHHHHHhhhc---chhhHHHhHhhHHHHHHHH
Confidence 678866 999999999999975432 1246788999999877555
No 10
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=48.52 E-value=5.5 Score=41.52 Aligned_cols=66 Identities=20% Similarity=0.450 Sum_probs=50.4
Q ss_pred cCCCChHHHHHHHHHhhhcCCCCCCccceeeccccchhHHHHHHH--hhcCCcccccccccccccCCCCCCc-eEEE
Q 014391 53 WASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKE--IVRSPEFCGKLTFPVSLKQPGARDG-TIQC 126 (425)
Q Consensus 53 w~~lppell~dv~~r~e~se~~wp~r~~vvaca~vc~~wr~~~ke--iv~~pe~~g~ltfpisLkqPgPrd~-~iQC 126 (425)
|.+||.|+|.+|.. |=..|....-|+||++|-.+..+ +-...+.-|+---|++|-|=..|+. .+.|
T Consensus 98 ~~slpDEill~IFs--------~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rl 166 (419)
T KOG2120|consen 98 WDSLPDEILLGIFS--------CLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRL 166 (419)
T ss_pred cccCCHHHHHHHHH--------hccHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCeEEEEc
Confidence 99999999999986 55667888899999999887743 3445566677667777766666664 4666
No 11
>PF11038 DGF-1_5: Dispersed gene family protein 1 of Trypanosoma cruzi region 5; InterPro: IPR021282 Dispersed gene family protein 1 of Trypanosoma cruzi is likely to be highly expressed, and is expressed from the sub-telomeric region []. However, its function is not known. This entry represents domain 5 on this protein, found downstream the C-terminal domain.
Probab=39.10 E-value=1.1e+02 Score=30.12 Aligned_cols=54 Identities=30% Similarity=0.468 Sum_probs=39.4
Q ss_pred CCCCCccceeeccccchhHHHHHHHhhcCCcccccccc-cccccCC----CCCCceEE-EEEEEecCCc
Q 014391 73 SSWPARKHVVACAAVCRSWRAMCKEIVRSPEFCGKLTF-PVSLKQP----GARDGTIQ-CFIKRDKSNL 135 (425)
Q Consensus 73 ~~wp~r~~vvaca~vc~~wr~~~keiv~~pe~~g~ltf-pisLkqP----gPrd~~iQ-CfIkR~K~~~ 135 (425)
..-|.+ -.|+|+..|| |. ++|+..--|+| |.++.|| ||++.++. -.-.||+.+.
T Consensus 15 ~~~p~~-~~va~~~~~r-w~-------rd~~l~~~l~f~~~s~~q~~~~~~~~ge~lrnatw~rn~tnp 74 (278)
T PF11038_consen 15 GAVPKK-LTVALPPPFR-WA-------RDPQLGTHLTFCRCSRMQPNGYSGPWGEMLRNATWVRNATNP 74 (278)
T ss_pred ccCCcc-eEEecCCCcc-cc-------cCCCcCcceEEEEecccCCccCCCchHhhhccCeeeecCCCC
Confidence 334443 6789999998 76 58999889999 8899999 46665543 3566776654
No 12
>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain has a conserved CDCGGWD sequence motif.
Probab=34.60 E-value=2.2e+02 Score=30.06 Aligned_cols=72 Identities=21% Similarity=0.399 Sum_probs=40.5
Q ss_pred CceEEEEEEEecCCc-eEEEEeeccccccccCceEEEEEEeeccC----Ccee--EEEEc-cC---C---Ccc-----cC
Q 014391 121 DGTIQCFIKRDKSNL-TYHLFLCLSPALLVENGKFLLSAKRTRRT----TCTE--YVISM-DA---D---NIS-----RS 181 (425)
Q Consensus 121 d~~iQCfIkR~K~~~-tY~LYL~l~~~~~~e~gKfLLaArK~rr~----t~S~--YiISl-d~---d---dlS-----r~ 181 (425)
-+.+||.+| .|. .|.+-+ |+.+=.|||+-.+-. ...+ |.+-. +. . -++ +.
T Consensus 6 qalLq~t~K---NG~P~F~Fsv--------d~~~~VlaAt~~k~~~~~~~~~~~vYTFhs~~e~KKks~~w~~~~~k~k~ 74 (346)
T PF12043_consen 6 QALLQCTWK---NGLPLFEFSV--------DNPEEVLAATMWKSGSSDKNDLNWVYTFHSIKEVKKKSGSWINSGDKNKS 74 (346)
T ss_pred eEEEEEEEe---CCeEEEEEEe--------CCcccEEEEEEeecccccccccceEEEEEeeccccccccccccccccccC
Confidence 467888887 343 444443 333457888755543 2334 44322 21 1 121 22
Q ss_pred CCceeeEee-----------ece-eecEEEEecC
Q 014391 182 SSTYIGKLR-----------SNF-LGTKFIIYDT 203 (425)
Q Consensus 182 S~~yVGKLR-----------SNf-lGTkFtIYD~ 203 (425)
..+.||+++ .+. +-|+|++||.
T Consensus 75 ~~~iVGQMkVSss~~~~~~~~~~s~~~EFVLf~~ 108 (346)
T PF12043_consen 75 SSNIVGQMKVSSSLSSEPSKQGSSMVTEFVLFGV 108 (346)
T ss_pred CcceEEEEEeeeeeeecccCCcceeEEEEEEEec
Confidence 346999997 233 7789999995
No 13
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=33.16 E-value=1.3e+02 Score=27.88 Aligned_cols=79 Identities=22% Similarity=0.293 Sum_probs=31.8
Q ss_pred CceEEEEEEEecCCc--eEEEEeeccccccccCceEEEEEEee-ccCCceeEEEEccCC-Cc-ccCCCceeeEeeeceee
Q 014391 121 DGTIQCFIKRDKSNL--TYHLFLCLSPALLVENGKFLLSAKRT-RRTTCTEYVISMDAD-NI-SRSSSTYIGKLRSNFLG 195 (425)
Q Consensus 121 d~~iQCfIkR~K~~~--tY~LYL~l~~~~~~e~gKfLLaArK~-rr~t~S~YiISld~d-dl-Sr~S~~yVGKLRSNflG 195 (425)
.|..-..|+|..-.. +|..|.+-+ .+..+.+...||. .-...++..+.+... .. .-++...-=+|+.||++
T Consensus 61 ~G~~L~~i~~k~~~l~~~w~i~~~~~----~~~~~~i~tvkk~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~G~~~~ 136 (187)
T PF04525_consen 61 SGNPLFTIRRKLFSLRPTWEIYRGGG----SEGKKPIFTVKKKSMLQNKDSFDVFLPPKSNISIDDSEGPDFEIKGNFWD 136 (187)
T ss_dssp TS-EEEEEE--------EEEEEETT-------GGGEEEEEE----------EEEEET--T----------SEEEES-TTT
T ss_pred CCCEEEEEEeeecccceEEEEEECCC----CccCceEEEEEEecccCCCcceeEEEecccceeecCCCCceEEEEEEecC
Confidence 355557888754343 999998632 1223467777765 122223333333322 11 01122233478999999
Q ss_pred cEEEEecC
Q 014391 196 TKFIIYDT 203 (425)
Q Consensus 196 TkFtIYD~ 203 (425)
-.|+|||.
T Consensus 137 ~~~~I~~~ 144 (187)
T PF04525_consen 137 RSFTIYDS 144 (187)
T ss_dssp T--EEEEC
T ss_pred cEEEEEEc
Confidence 99999973
No 14
>PF11922 DUF3440: Domain of unknown function (DUF3440); InterPro: IPR021845 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 53 to 190 amino acids in length. This domain is found associated with PF01507 from PFAM. This domain has a conserved KND sequence motif.
Probab=25.45 E-value=70 Score=30.78 Aligned_cols=22 Identities=36% Similarity=0.943 Sum_probs=19.9
Q ss_pred hhHHHHHHHhhcCCcccccccc
Q 014391 89 RSWRAMCKEIVRSPEFCGKLTF 110 (425)
Q Consensus 89 ~~wr~~~keiv~~pe~~g~ltf 110 (425)
|+||.||+-|.|+---|-.+.|
T Consensus 150 PswkRic~~ilKND~~cr~lsF 171 (181)
T PF11922_consen 150 PSWKRICKCILKNDYWCRYLSF 171 (181)
T ss_pred chHHHHHHHHHccchhhhhccC
Confidence 8999999999999887887777
Done!