Query 014391
Match_columns 425
No_of_seqs 234 out of 348
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 10:44:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014391.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014391hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fim_A Tubby related protein 1 100.0 3.3E-90 1.1E-94 675.0 22.1 243 113-425 28-276 (276)
2 3c5n_A Tubby-related protein 1 100.0 1.8E-87 6.1E-92 646.6 22.0 237 113-419 4-246 (246)
3 1fs1_A SKP2 F-BOX, cyclin A/CD 98.0 1.5E-06 5.2E-11 63.5 1.2 40 49-96 5-44 (53)
4 2ast_B S-phase kinase-associat 96.5 0.00068 2.3E-08 63.7 1.6 40 49-96 5-44 (336)
5 2e31_A FBS1, F-box only protei 96.2 0.0012 4E-08 65.2 1.2 39 50-96 48-87 (297)
6 2p1m_B Transport inhibitor res 95.5 0.003 1E-07 63.8 0.8 42 49-97 2-43 (594)
7 2ovr_B FBW7, F-BOX/WD repeat p 94.0 0.013 4.5E-07 56.6 0.9 41 48-96 14-54 (445)
8 3v7d_B Cell division control p 93.7 0.0084 2.9E-07 57.8 -0.9 42 48-97 10-51 (464)
9 3l2o_B F-box only protein 4; s 92.1 0.02 6.8E-07 57.0 -1.0 39 51-97 3-41 (312)
10 1p22_A F-BOX/WD-repeat protein 90.9 0.031 1.1E-06 54.0 -1.0 41 48-96 6-50 (435)
11 3ogk_B Coronatine-insensitive 88.7 0.11 3.6E-06 52.6 0.8 37 53-96 13-49 (592)
12 1zxu_A AT5G01750 protein; PFAM 29.8 1.2E+02 0.0039 27.5 6.9 11 236-246 166-176 (217)
No 1
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=100.00 E-value=3.3e-90 Score=675.04 Aligned_cols=243 Identities=45% Similarity=0.771 Sum_probs=187.5
Q ss_pred cccCCCCCCceEEEEEEEecCCc------eEEEEeeccccccccCceEEEEEEeeccCCceeEEEEccCCCcccCCCcee
Q 014391 113 SLKQPGARDGTIQCFIKRDKSNL------TYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYI 186 (425)
Q Consensus 113 sLkqPgPrd~~iQCfIkR~K~~~------tY~LYL~l~~~~~~e~gKfLLaArK~rr~t~S~YiISld~ddlSr~S~~yV 186 (425)
.|+||||+|++|||+|+|||+|+ +|||||+ .++++|||||||+|+++++||+||+|++||||++++||
T Consensus 28 fl~~P~P~~~~iqC~I~R~k~g~~~g~yp~y~L~l~------~~~~~fLLaarK~k~~~ts~YiIS~d~~dlsr~s~~yv 101 (276)
T 2fim_A 28 FVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD------TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFI 101 (276)
T ss_dssp GGGSCCCTTCCEEEEEEEEC-------CCEEEEEEC------SSSCEEEEEEEECTTCSSCEEEEESCTTC------CEE
T ss_pred HhcCCCCCCCeEEEEEEEeCCCCCCCCceEEEEEEe------CCCCEEEEEEEeccCCCCceEEEEecchhcccCCceEE
Confidence 59999999999999999999984 9999985 46789999999999999999999999999999999999
Q ss_pred eEeeeceeecEEEEecCCCCCCCCCCCCCCCCcccccccccCCCCCCCceeeEEEEEeeeccCcCCCceeEEeecCCCcc
Q 014391 187 GKLRSNFLGTKFIIYDTQPPHTSANITPSGCTSRRFYSKKVSPKVPSGSYNIAQIAYELNVLGTRGPRRMHCIMHSIPAS 266 (425)
Q Consensus 187 GKLRSNflGTkFtIYD~gpp~~~a~~~~~~r~srr~~sk~vsp~vp~~~~eva~V~Ye~NvLg~rGPRrM~cim~~IP~~ 266 (425)
|||||||+||+|+|||+|++++.+ .+|+++.+++|||+|+||+||||++|||+|+|+| |.+
T Consensus 102 GKLrSNflGtkF~iyD~G~~p~~~----------------~s~~~~~~r~el~~V~Ye~nvlg~~gPR~m~v~i---P~~ 162 (276)
T 2fim_A 102 GKLRSNLLGNRFTVFDNGQNPQRG----------------YSTNVASLRQELAAVIYETNVLGFRGPRRMTVII---PGM 162 (276)
T ss_dssp EEEEECSSSSEEEEECSSBCGGGC----------------TTSCGGGBCCEEEEEEEC---------CCEEEEE---ECB
T ss_pred EEEEEccCCCEEEEECCCCCcccc----------------cCcccccccEEEEEEEEEecccCCCCCeEEEEEe---cCc
Confidence 999999999999999999755321 3566778899999999999999999999999997 443
Q ss_pred cccCCCCCCCCCcccCCcccccccccccccCCCcccccccccccccccccccccCCCcccEEeccCCCcccccccceEee
Q 014391 267 SIDVGGSVPGQPELLPRSLEDSFRSISFSKSLDHSVDFSSARFSEIGALREDDEDGKLRPLILKNKPPRWHEQLQCWCLN 346 (425)
Q Consensus 267 ~~~~gg~~P~q~~~~~~~~~~sf~~~~~~k~~~~~~~~~s~r~~~~~~~~~~~~~~~~~~lvL~nK~P~w~e~lq~y~Ln 346 (425)
. ++|+.+|.++. ..++++. .++ + +...+++++|+||+|+|||++||||||
T Consensus 163 ~-~~~~~~~~~p~----~~~~~ll-----------~~~-----~---------~~~~~~~~~l~nK~P~wne~~~~y~Ln 212 (276)
T 2fim_A 163 S-AENERVPIRPR----NASDGLL-----------VRW-----Q---------NKTLESLIELHNKPPVWNDDSGSYTLN 212 (276)
T ss_dssp C-TTSCBCCCCCS----STTCSHH-----------HHH-----H---------HTCCTTEEEEEECCCEEETTTTEEECC
T ss_pred c-cCCCEecccCC----Ccccccc-----------hhh-----h---------ccCCcceEeeeccCCcccccCCEEEEe
Confidence 3 45666665442 2222221 011 1 124578999999999999999999999
Q ss_pred cCCeeeccccceeEEEeccCCCCCCCCCCCCCCCCCCcEEEEeeccCCCeeEEEccCCCCHHHHHHHHHHcCccccccC
Q 014391 347 FRGRVTVASVKNFQLIAATQPAAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 425 (425)
Q Consensus 347 F~GRVt~aSVKNFQLv~~~~~~~g~~~~~~~~~~~~~~iiLQFGKv~kd~FtmD~ryPlS~~QAFaI~LsSfdtKlACE 425 (425)
|+||||+|||||||||+. +++++||||||||++|+|||||+|||||||||||||||||+|||||
T Consensus 213 F~GRVt~aSvKNFQLv~~---------------~d~~~ivlQFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfd~Klace 276 (276)
T 2fim_A 213 FQGRVTQASVKNFQIVHA---------------DDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 276 (276)
T ss_dssp CTTCCCSCCTTCEEEECT---------------TCTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHTCC------
T ss_pred cCCeeeccccceEEEEec---------------CCCCEEEEEEeecCCCeEEEEecCCCCHHHHHHHHHHhcccccccC
Confidence 999999999999999983 4678999999999999999999999999999999999999999998
No 2
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=100.00 E-value=1.8e-87 Score=646.55 Aligned_cols=237 Identities=44% Similarity=0.755 Sum_probs=192.8
Q ss_pred cccCCCCCCceEEEEEEEecCCc------eEEEEeeccccccccCceEEEEEEeeccCCceeEEEEccCCCcccCCCcee
Q 014391 113 SLKQPGARDGTIQCFIKRDKSNL------TYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYI 186 (425)
Q Consensus 113 sLkqPgPrd~~iQCfIkR~K~~~------tY~LYL~l~~~~~~e~gKfLLaArK~rr~t~S~YiISld~ddlSr~S~~yV 186 (425)
.|+||||+|++|||+|+|||+|+ +||||++ .++++|||||||++++++||||||+|++||||++++||
T Consensus 4 fl~~P~P~~~~~qC~I~R~k~g~~~~~yp~y~l~~~------~~~~~fLlaark~~~~~~s~YiIS~d~~dlsr~s~~yv 77 (246)
T 3c5n_A 4 FVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD------TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFI 77 (246)
T ss_dssp GGGSCCCTTCEEEEEEEECC------CCCEEEEEES------SSSCCEEEEEEECTTCSSCEEEEESCTTC------CEE
T ss_pred HcCCCCCCCceEEEEEEEeCCCCCCCCceEEEEEEe------CCCcEEEEeeeeccCCCCceEEEEeCccccccCCceEE
Confidence 48999999999999999999985 8999985 35678999999999999999999999999999999999
Q ss_pred eEeeeceeecEEEEecCCCCCCCCCCCCCCCCcccccccccCCCCCCCceeeEEEEEeeeccCcCCCceeEEeecCCCcc
Q 014391 187 GKLRSNFLGTKFIIYDTQPPHTSANITPSGCTSRRFYSKKVSPKVPSGSYNIAQIAYELNVLGTRGPRRMHCIMHSIPAS 266 (425)
Q Consensus 187 GKLRSNflGTkFtIYD~gpp~~~a~~~~~~r~srr~~sk~vsp~vp~~~~eva~V~Ye~NvLg~rGPRrM~cim~~IP~~ 266 (425)
|||||||+||+|+|||+|++++. ..+|+++.+++|||+|+||+||||++|||+|+|+| |.+
T Consensus 78 GKLrsNf~Gt~F~iyD~g~~p~~----------------~~s~~~~~~r~el~~v~Ye~n~l~~~gPR~m~v~i---P~~ 138 (246)
T 3c5n_A 78 GKLRSNLLGNRFTVFDNGQNPQR----------------GYSTNVASLRQELAAVIYETNVLGFRGPRRMTVII---PGM 138 (246)
T ss_dssp EEEEECSSSSEEEEECSCBCGGG----------------CTTSCGGGBCCEEEEEEECCCCCC---CCCEEEEE---ECB
T ss_pred EEEEEccCCCEEEEECCCCCccc----------------ccCcccccccEEEEEEEEEecccCCCCCeEEEEEe---cCc
Confidence 99999999999999999975532 13466778899999999999999999999999997 443
Q ss_pred cccCCCCCCCCCcccCCcccccccccccccCCCcccccccccccccccccccccCCCcccEEeccCCCcccccccceEee
Q 014391 267 SIDVGGSVPGQPELLPRSLEDSFRSISFSKSLDHSVDFSSARFSEIGALREDDEDGKLRPLILKNKPPRWHEQLQCWCLN 346 (425)
Q Consensus 267 ~~~~gg~~P~q~~~~~~~~~~sf~~~~~~k~~~~~~~~~s~r~~~~~~~~~~~~~~~~~~lvL~nK~P~w~e~lq~y~Ln 346 (425)
. ++|+.+|.++. ..++++. .++ + +...+++++|+||+|+|||++||||||
T Consensus 139 ~-~~~~~~~~~p~----~~~~~~~-----------~~~-----~---------~~~~~~~~~l~nK~P~w~e~~~~y~Ln 188 (246)
T 3c5n_A 139 S-AENERVPIRPR----NASDGLL-----------VRW-----Q---------NKTLESLIELHNKPPVWNDDSGSYTLN 188 (246)
T ss_dssp C-TTSCBCCCCCS----STTSSHH-----------HHH-----H---------HTCCTTEEEEEECCCEEETTTTEEECC
T ss_pred c-cCCCEeeccCC----Cccccch-----------hhh-----h---------ccCCcceEEEeccCCcccccCCEEEEe
Confidence 3 45666665442 2222221 011 1 124578999999999999999999999
Q ss_pred cCCeeeccccceeEEEeccCCCCCCCCCCCCCCCCCCcEEEEeeccCCCeeEEEccCCCCHHHHHHHHHHcCc
Q 014391 347 FRGRVTVASVKNFQLIAATQPAAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFD 419 (425)
Q Consensus 347 F~GRVt~aSVKNFQLv~~~~~~~g~~~~~~~~~~~~~~iiLQFGKv~kd~FtmD~ryPlS~~QAFaI~LsSfd 419 (425)
|+||||+|||||||||+. +++++||||||||++|+|||||+|||||||||||||||||
T Consensus 189 F~GRvt~aSvKNFqLv~~---------------~~~~~ivlqFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfD 246 (246)
T 3c5n_A 189 FQGRVTQASVKNFQIVHA---------------DDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFD 246 (246)
T ss_dssp CTTSCCBCCTTCEEEEBT---------------TBTTSCSEEEEEEETTEEEEEEETTCCHHHHHHHHHHTCC
T ss_pred cCCeeeccccceEEEEec---------------CCCCEEEEEEEEecCCeEEEEecCCCCHHHHHHHHHHcCC
Confidence 999999999999999983 4678999999999999999999999999999999999998
No 3
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=97.98 E-value=1.5e-06 Score=63.53 Aligned_cols=40 Identities=28% Similarity=0.621 Sum_probs=32.6
Q ss_pred ccCccCCCChHHHHHHHHHhhhcCCCCCCccceeeccccchhHHHHHH
Q 014391 49 QNSCWASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCK 96 (425)
Q Consensus 49 ~~~~w~~lppell~dv~~r~e~se~~wp~r~~vvaca~vc~~wr~~~k 96 (425)
++..|+.||+|+|..|+.++. .++++.|+.|||.|+.++.
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~--------~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLC--------LPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSC--------GGGHHHHHTTCHHHHHHHT
T ss_pred CCCCHHHCCHHHHHHHHHcCC--------HHHHHHHHHHHHHHHHHhC
Confidence 456799999999999999994 3689999999999998774
No 4
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.52 E-value=0.00068 Score=63.73 Aligned_cols=40 Identities=28% Similarity=0.616 Sum_probs=33.9
Q ss_pred ccCccCCCChHHHHHHHHHhhhcCCCCCCccceeeccccchhHHHHHH
Q 014391 49 QNSCWASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCK 96 (425)
Q Consensus 49 ~~~~w~~lppell~dv~~r~e~se~~wp~r~~vvaca~vc~~wr~~~k 96 (425)
++..|+.||+|+|..|+..+.. ++++.|+.||+.|++++.
T Consensus 5 ~~~~~~~LP~eil~~If~~L~~--------~d~~~~~~vc~~W~~~~~ 44 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLCL--------PELLKVSGVCKRWYRLAS 44 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSCH--------HHHHHTTSSCHHHHHHHT
T ss_pred ccCChhhCCHHHHHHHHHhCCH--------HHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999954 368999999999999873
No 5
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=96.19 E-value=0.0012 Score=65.18 Aligned_cols=39 Identities=33% Similarity=0.653 Sum_probs=34.1
Q ss_pred cCccCCCChHHHHHHHHHhhhcCCCCCCcccee-eccccchhHHHHHH
Q 014391 50 NSCWASLPPELLCDVIKRLEESESSWPARKHVV-ACAAVCRSWRAMCK 96 (425)
Q Consensus 50 ~~~w~~lppell~dv~~r~e~se~~wp~r~~vv-aca~vc~~wr~~~k 96 (425)
....+.||+|||.+|+.||.. ++++ .|+.|||.||.++.
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~--------~~L~~r~~~VCk~Wr~l~~ 87 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPA--------TELVQACRLVCLRWKELVD 87 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCH--------HHHHHTGGGTCHHHHHHHT
T ss_pred ccChhhCCHHHHHHHHHcCCH--------HHHHHHHHHHhHHHHHHhc
Confidence 346889999999999999977 4788 99999999998874
No 6
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=95.49 E-value=0.003 Score=63.84 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=29.3
Q ss_pred ccCccCCCChHHHHHHHHHhhhcCCCCCCccceeeccccchhHHHHHHH
Q 014391 49 QNSCWASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKE 97 (425)
Q Consensus 49 ~~~~w~~lppell~dv~~r~e~se~~wp~r~~vvaca~vc~~wr~~~ke 97 (425)
+...|+.||+|+|..|+..+. ..+++++|+-||++|+.+...
T Consensus 2 ~~d~~~~LPdevL~~If~~L~-------~~~d~~~~s~vck~W~~~~~~ 43 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFIQ-------LDKDRNSVSLVCKSWYEIERW 43 (594)
T ss_dssp --------CHHHHHHHHHTCC-------CHHHHHHHHTSCHHHHHHHHH
T ss_pred cccchhhCCHHHHHHHHhhcC-------CchhHHHHHHHHHHHHHhhhh
Confidence 457899999999999999985 346889999999999998433
No 7
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=93.99 E-value=0.013 Score=56.60 Aligned_cols=41 Identities=34% Similarity=0.576 Sum_probs=35.3
Q ss_pred cccCccCCCChHHHHHHHHHhhhcCCCCCCccceeeccccchhHHHHHH
Q 014391 48 IQNSCWASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCK 96 (425)
Q Consensus 48 ~~~~~w~~lppell~dv~~r~e~se~~wp~r~~vvaca~vc~~wr~~~k 96 (425)
.+..-++.||+|||..|+..|+. ++++.||.||+.|++++.
T Consensus 14 ~~~d~~~~lp~e~~~~i~~~l~~--------~~l~~~~~v~~~~~~~~~ 54 (445)
T 2ovr_B 14 FQRDFISLLPKELALYVLSFLEP--------KDLLQAAQTCRYWRILAE 54 (445)
T ss_dssp CCCSTTTSSCHHHHHHHHTTSCH--------HHHHHHTTSCHHHHHHHT
T ss_pred ccCChhHHCCHHHHHHHHHhCCH--------HHHHHHHHHhHHHHhhcC
Confidence 35567999999999999999965 468999999999998874
No 8
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=93.73 E-value=0.0084 Score=57.83 Aligned_cols=42 Identities=17% Similarity=0.420 Sum_probs=36.0
Q ss_pred cccCccCCCChHHHHHHHHHhhhcCCCCCCccceeeccccchhHHHHHHH
Q 014391 48 IQNSCWASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKE 97 (425)
Q Consensus 48 ~~~~~w~~lppell~dv~~r~e~se~~wp~r~~vvaca~vc~~wr~~~ke 97 (425)
.+..-++.||+|||..|+..|+. ++++.|+.||+.|+.++.+
T Consensus 10 ~~~d~~~~lp~~~~~~i~~~l~~--------~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 10 LKRDLITSLPFEISLKIFNYLQF--------EDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCCCHHHHSCHHHHHHHHTTSCH--------HHHHHHHTTCHHHHHHHTT
T ss_pred cccCChHHCCHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHHcC
Confidence 45567889999999999999965 4889999999999998753
No 9
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=92.07 E-value=0.02 Score=56.96 Aligned_cols=39 Identities=13% Similarity=0.296 Sum_probs=34.5
Q ss_pred CccCCCChHHHHHHHHHhhhcCCCCCCccceeeccccchhHHHHHHH
Q 014391 51 SCWASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKE 97 (425)
Q Consensus 51 ~~w~~lppell~dv~~r~e~se~~wp~r~~vvaca~vc~~wr~~~ke 97 (425)
+-|..||.|++..|+.-|+. +++..||.||+.||.++.+
T Consensus 3 ~~l~~LP~ei~l~IlsfL~p--------~DL~~l~~vcr~Wr~la~D 41 (312)
T 3l2o_B 3 STLTRLPIDVQLYILSFLSP--------HDLCQLGSTNHYWNETVRD 41 (312)
T ss_dssp CHHHHSCHHHHHHHHHTSCH--------HHHHHHHTTCHHHHHHHTC
T ss_pred chhHhCCHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHhcc
Confidence 34789999999999999987 4799999999999999854
No 10
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=90.93 E-value=0.031 Score=54.02 Aligned_cols=41 Identities=22% Similarity=0.543 Sum_probs=34.7
Q ss_pred cccCccCCCChH----HHHHHHHHhhhcCCCCCCccceeeccccchhHHHHHH
Q 014391 48 IQNSCWASLPPE----LLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCK 96 (425)
Q Consensus 48 ~~~~~w~~lppe----ll~dv~~r~e~se~~wp~r~~vvaca~vc~~wr~~~k 96 (425)
.+..-.+.||+| ||..|+..|+. +++..||.||+.|++++.
T Consensus 6 ~~~d~~~~lp~e~~~~~~~~i~~~l~~--------~~l~~~~~v~~~w~~~~~ 50 (435)
T 1p22_A 6 LQRDFITALPARGLDHIAENILSYLDA--------KSLCAAELVCKEWYRVTS 50 (435)
T ss_dssp SCCCHHHHTGGGTCHHHHHHHHTTCCH--------HHHHHHHHHCHHHHHHHH
T ss_pred hhcChHHHCCcchHHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHhc
Confidence 445567789999 99999999987 478999999999998884
No 11
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=88.72 E-value=0.11 Score=52.59 Aligned_cols=37 Identities=16% Similarity=0.334 Sum_probs=31.5
Q ss_pred cCCCChHHHHHHHHHhhhcCCCCCCccceeeccccchhHHHHHH
Q 014391 53 WASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCK 96 (425)
Q Consensus 53 w~~lppell~dv~~r~e~se~~wp~r~~vvaca~vc~~wr~~~k 96 (425)
.+.||+|+|..|+..++ +.++.++|+-||++|+.+..
T Consensus 13 ~~~LPdeil~~I~~~L~-------~~~d~~~~s~vck~W~~~~~ 49 (592)
T 3ogk_B 13 CVATVDDVIEQVMTYIT-------DPKDRDSASLVCRRWFKIDS 49 (592)
T ss_dssp CCCCGGGTHHHHHTTCC-------CHHHHHHHTTSCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhcC-------CHHHHHHHHHHhHHHHHhhh
Confidence 45899999999999994 24678999999999999853
No 12
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=29.84 E-value=1.2e+02 Score=27.50 Aligned_cols=11 Identities=18% Similarity=0.090 Sum_probs=6.4
Q ss_pred eeeEEEEEeee
Q 014391 236 YNIAQIAYELN 246 (425)
Q Consensus 236 ~eva~V~Ye~N 246 (425)
..||.|+-+.+
T Consensus 166 ~~Va~I~kk~~ 176 (217)
T 1zxu_A 166 AIVAQMHRKHT 176 (217)
T ss_dssp CEEEEEEEC--
T ss_pred EEEEEEEeeee
Confidence 46788877644
Done!