BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014392
(425 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q57883|Y441_METJA UPF0721 transmembrane protein MJ0441 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0441 PE=3 SV=1
Length = 267
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 289 GVLAGIVGGLLGLGGGFIMGP----LFLELGVPPQVSSATAT--FAMTFSSSMSVVEYYL 342
G + GI+G L G+GGGF++ P +F G+P V A T F + +S +S+ +
Sbjct: 20 GFIVGILGSLFGIGGGFLVAPILTFIFDYFGIPDGVKFAVGTSLFVVFINSIISIFRHAK 79
Query: 343 LKR 345
+K
Sbjct: 80 IKN 82
>sp|O34430|YTNM_BACSU UPF0721 transmembrane protein YtnM OS=Bacillus subtilis (strain
168) GN=ytnM PE=3 SV=1
Length = 300
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%)
Query: 281 QLVSYCAFGVLAGIVGGLLGLGGGFIMGPLFLELGVPPQVSSATATFAMTFSSSMSVVEY 340
+L+ + G+L+ ++ G LG+ G L L G+ P V+SA+ A +++ S V +
Sbjct: 3 KLIVFAFIGLLSQLIDGSLGMAYGVTSTSLLLAFGITPAVASASVHLAEVVTTAASGVSH 62
Query: 341 YLLKRFPVPYALYFVAVATIAAFVGQHVVRKL 372
V +I AF+G + +L
Sbjct: 63 IKFGNVDKQTVYQLVIPGSIGAFLGAAFLSQL 94
>sp|P42726|TFXD_RHILT Trifolitoxin-processing protein TfxD OS=Rhizobium leguminosarum bv.
trifolii GN=tfxD PE=4 SV=1
Length = 416
Score = 33.1 bits (74), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 269 SKGDDGKSFRVFQLVSYCAFGV---LAGIVGGLLGLGGGFIMGPLFLELGVPPQVSSATA 325
+K D GK ++Y A GV LA ++G + L ++GPLFL + + P V S TA
Sbjct: 352 AKADGGK-LTHLSAIAYLASGVILALAAVLGSVQALAIALVLGPLFLAISI-PAVQSRTA 409
Query: 326 TFAM 329
A+
Sbjct: 410 LNAL 413
>sp|P54437|YRKJ_BACSU UPF0721 transmembrane protein YrkJ OS=Bacillus subtilis (strain
168) GN=yrkJ PE=3 SV=1
Length = 261
Score = 32.7 bits (73), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 14/116 (12%)
Query: 267 IASKGDDGKSFR-----VFQ--LVSYCAFGVLAGIVGGLLGLGGGFIMGPLFLE-LGVPP 318
I KG G+ +F L S AF + G V G+LG GG FI+ P+ L L +P
Sbjct: 125 IPKKGQKGQEHSEDKEVIFNKWLASSLAF--IIGGVSGILGAGGAFILVPIMLSILNIPV 182
Query: 319 QVSSATATFAMTFSSSM--SVVEYYLLKRFPVPYALYFVAVATIAAFVGQHVVRKL 372
+V+ A+ + A+TF SS+ +V + + VP AL + + IA+ +G V +K+
Sbjct: 183 RVTVAS-SLAITFLSSIGATVGKVITGQVLFVP-ALVLMITSLIASPIGASVGQKV 236
>sp|E3Q4R4|M28P1_COLGM Probable zinc metalloprotease GLRG_01223 OS=Colletotrichum
graminicola (strain M1.001 / M2 / FGSC 10212)
GN=GLRG_01223 PE=3 SV=1
Length = 1034
Score = 32.3 bits (72), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 15/80 (18%)
Query: 327 FAMTFSSSMSVVEYYLLKR------FPVPYA-------LYFVAVATIAAFVGQHVVRKLI 373
FA+ S+S++V+ +L++R + PYA L+F+ TIA G VVR
Sbjct: 475 FALVLSASITVLSAFLIRRVNPHIIYSSPYAVWAMTLSLFFLVFWTIAK--GASVVRPSA 532
Query: 374 ILLGRASLIIFILAFMIFVS 393
+ G A + +F+++++I V+
Sbjct: 533 LQRGYAHIWLFVISWVILVA 552
>sp|P53125|ITC1_YEAST Imitation switch two complex protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ITC1 PE=1 SV=1
Length = 1264
Score = 32.3 bits (72), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 17/102 (16%)
Query: 142 TSTKAFLKGVETWKRETILKKEAARCLGSNGAGAGEVEYKSLPSGPRSGPQKDAMEPEVT 201
T+T+ + W+R + ++ + + +VEYK + P S
Sbjct: 497 TTTEEDSENPSDWQRNSFIRDMIMK------RNSDKVEYKIVHDDPASD----------D 540
Query: 202 ILENINWKELGLLVFVWVAFLGLQIAKNHTASCSIVY-WVLD 242
IL+NIN LL+ V+ A L L I + SC +V W++D
Sbjct: 541 ILDNINHNGSALLIEVFTALLRLFINEEGDWSCIVVENWIID 582
>sp|O05229|MRPD_BACSU Na(+)/H(+) antiporter subunit D OS=Bacillus subtilis (strain 168)
GN=mrpD PE=1 SV=3
Length = 493
Score = 32.0 bits (71), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 340 YYLLKRFPVPYALYFVAVATIAAFVGQHVVRKLIILLGRASLIIFILAFMIFVSAISLGG 399
YYL+ + AL+ +A T+ A G + K+ L+ R +L +M F+SAISL G
Sbjct: 328 YYLIHDMLIKGALFMLA-GTLIALTGTASLHKMGGLIKRYP----VLGWMFFISAISLAG 382
Query: 400 V-GISNMIGKFHRHE 413
+ +S +GKF E
Sbjct: 383 IPPLSGFVGKFKIAE 397
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.142 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 152,605,660
Number of Sequences: 539616
Number of extensions: 6303268
Number of successful extensions: 20076
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 20061
Number of HSP's gapped (non-prelim): 34
length of query: 425
length of database: 191,569,459
effective HSP length: 120
effective length of query: 305
effective length of database: 126,815,539
effective search space: 38678739395
effective search space used: 38678739395
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 63 (28.9 bits)