Query 014392
Match_columns 425
No_of_seqs 366 out of 1703
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 04:41:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014392.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014392hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0730 Predicted permeases [G 99.8 9.6E-17 2.1E-21 156.0 24.3 194 71-386 49-244 (258)
2 PRK10621 hypothetical protein; 99.8 7.1E-17 1.5E-21 157.9 23.1 195 66-385 46-243 (266)
3 PF01925 TauE: Sulfite exporte 99.7 7.2E-16 1.6E-20 147.4 18.5 195 67-386 33-234 (240)
4 PRK10621 hypothetical protein; 99.5 7.1E-13 1.5E-17 129.7 15.8 105 280-385 10-114 (266)
5 COG0730 Predicted permeases [G 99.4 2.2E-12 4.9E-17 125.3 15.4 105 281-385 6-110 (258)
6 PF01925 TauE: Sulfite exporte 99.2 1.4E-10 3.1E-15 110.8 12.4 100 286-386 2-101 (240)
7 KOG2881 Predicted membrane pro 80.5 8.6 0.00019 37.9 8.2 65 91-158 95-159 (294)
8 PRK11469 hypothetical protein; 80.4 51 0.0011 30.8 16.8 47 104-151 43-89 (188)
9 TIGR02840 spore_YtaF putative 72.9 86 0.0019 29.6 16.2 52 100-151 32-83 (206)
10 PF11169 DUF2956: Protein of u 63.6 13 0.00027 31.4 4.3 17 205-224 84-100 (103)
11 PF02673 BacA: Bacitracin resi 58.5 1.9E+02 0.0041 28.4 14.5 89 297-385 158-252 (259)
12 PF04018 DUF368: Domain of unk 52.7 2.4E+02 0.0052 27.8 21.3 87 282-389 142-228 (257)
13 PF11044 TMEMspv1-c74-12: Plec 51.6 68 0.0015 23.0 5.7 7 127-133 2-8 (49)
14 COG2271 UhpC Sugar phosphate p 50.8 3.4E+02 0.0073 29.0 17.1 32 303-334 357-393 (448)
15 COG3180 AbrB Putative ammonia 50.6 1.6E+02 0.0035 30.3 10.7 84 279-384 8-91 (352)
16 PTZ00370 STEVOR; Provisional 48.8 34 0.00074 34.2 5.3 47 113-159 242-291 (296)
17 PF05145 AmoA: Putative ammoni 48.3 3E+02 0.0066 27.7 20.7 85 278-384 153-237 (318)
18 PF07698 7TM-7TMR_HD: 7TM rece 47.0 2.3E+02 0.0049 25.9 16.5 56 308-375 72-127 (194)
19 PF04066 MrpF_PhaF: Multiple r 44.4 1.2E+02 0.0025 22.4 6.5 53 318-370 2-54 (55)
20 TIGR00908 2A0305 ethanolamine 43.2 1.1E+02 0.0024 31.7 8.6 12 87-98 369-380 (442)
21 PF11833 DUF3353: Protein of u 43.1 2.4E+02 0.0052 26.5 9.9 27 102-128 140-166 (194)
22 PRK11281 hypothetical protein; 40.4 7.2E+02 0.016 29.8 28.7 79 74-152 656-740 (1113)
23 TIGR01478 STEVOR variant surfa 40.0 39 0.00086 33.7 4.2 45 113-157 246-293 (295)
24 COG3619 Predicted membrane pro 39.8 1.1E+02 0.0023 29.7 7.1 64 75-138 143-207 (226)
25 PF01169 UPF0016: Uncharacteri 39.3 1.1E+02 0.0023 24.4 6.0 34 350-383 39-72 (78)
26 PRK04288 antiholin-like protei 39.2 3.7E+02 0.0081 26.1 15.5 80 283-372 93-174 (232)
27 PF08229 SHR3_chaperone: ER me 39.1 3.3E+02 0.0072 25.8 10.1 33 89-127 79-111 (196)
28 COG1967 Predicted membrane pro 38.9 96 0.0021 30.6 6.6 74 65-143 23-107 (271)
29 PRK10263 DNA translocase FtsK; 38.6 4.3E+02 0.0093 32.2 12.9 19 285-303 65-83 (1355)
30 TIGR00659 conserved hypothetic 38.5 3.7E+02 0.0081 26.0 15.4 64 306-372 103-168 (226)
31 COG5336 Uncharacterized protei 38.0 1.5E+02 0.0033 25.4 6.9 49 101-149 45-95 (116)
32 PF04018 DUF368: Domain of unk 38.0 3E+02 0.0066 27.1 10.1 41 344-384 50-90 (257)
33 TIGR02230 ATPase_gene1 F0F1-AT 36.5 1.2E+02 0.0026 25.6 6.0 20 355-374 53-72 (100)
34 TIGR00895 2A0115 benzoate tran 36.5 4.1E+02 0.0089 25.8 16.4 11 366-376 361-371 (398)
35 PF02652 Lactate_perm: L-lacta 36.3 6E+02 0.013 27.7 15.8 42 288-329 107-149 (522)
36 PF12794 MscS_TM: Mechanosensi 33.7 5.3E+02 0.011 26.2 16.4 49 103-151 201-251 (340)
37 PRK14766 lipoprotein signal pe 33.5 1.3E+02 0.0028 28.6 6.5 31 71-102 109-142 (201)
38 PF01988 VIT1: VIT family; In 33.2 4.2E+02 0.009 24.9 11.9 30 112-141 15-44 (213)
39 PRK12324 phosphoribose diphosp 32.9 5.1E+02 0.011 25.9 11.0 52 76-134 121-173 (295)
40 PF07172 GRP: Glycine rich pro 32.8 65 0.0014 26.8 3.9 16 16-31 11-26 (95)
41 COG4280 Predicted membrane pro 31.6 65 0.0014 30.7 4.0 47 104-155 44-90 (236)
42 PRK12585 putative monovalent c 30.3 2E+02 0.0044 27.1 7.0 20 353-372 72-91 (197)
43 PRK01844 hypothetical protein; 29.4 1.4E+02 0.0029 23.8 4.9 27 352-378 8-34 (72)
44 COG3366 Uncharacterized protei 28.0 6.6E+02 0.014 25.6 14.5 70 304-373 40-110 (311)
45 PRK10814 outer membrane-specif 27.4 3.8E+02 0.0083 27.3 9.4 25 287-311 316-340 (399)
46 PF03209 PUCC: PUCC protein; 26.5 7.8E+02 0.017 25.9 23.8 64 88-159 114-182 (403)
47 COG4060 MtrD Tetrahydromethano 26.4 1.8E+02 0.004 27.1 5.9 45 287-331 135-179 (230)
48 TIGR02840 spore_YtaF putative 26.2 5.5E+02 0.012 24.1 10.8 60 345-412 27-86 (206)
49 PF01169 UPF0016: Uncharacteri 25.9 3E+02 0.0064 21.9 6.5 40 102-141 37-76 (78)
50 TIGR02185 Trep_Strep conserved 25.9 5.4E+02 0.012 23.9 9.6 31 347-377 157-187 (189)
51 KOG1314 DHHC-type Zn-finger pr 25.2 4.2E+02 0.0091 27.5 8.7 78 74-163 152-233 (414)
52 TIGR01191 ccmC heme exporter p 25.0 4.1E+02 0.0088 24.8 8.2 74 75-151 26-105 (184)
53 TIGR03434 ADOP Acidobacterial 24.9 1E+03 0.022 26.7 14.0 25 287-311 323-347 (803)
54 PRK00281 undecaprenyl pyrophos 24.6 6.9E+02 0.015 24.7 22.0 41 299-339 164-204 (268)
55 PF11044 TMEMspv1-c74-12: Plec 24.6 73 0.0016 22.9 2.3 27 239-265 4-30 (49)
56 PRK10420 L-lactate permease; P 24.4 8.1E+02 0.017 26.9 11.5 44 287-330 121-165 (551)
57 PRK09695 glycolate transporter 24.0 7.8E+02 0.017 27.1 11.3 44 287-330 121-165 (560)
58 TIGR02359 thiW thiW protein. L 23.8 5.6E+02 0.012 23.3 13.4 44 333-376 79-122 (160)
59 COG3949 Uncharacterized membra 23.4 6.6E+02 0.014 25.9 9.8 16 296-311 211-226 (349)
60 TIGR00910 2A0307_GadC glutamat 23.3 2.3E+02 0.0049 30.4 7.0 12 87-98 384-395 (507)
61 TIGR00911 2A0308 L-type amino 22.6 2.3E+02 0.0049 30.1 6.8 12 87-98 411-422 (501)
62 PF02673 BacA: Bacitracin resi 22.6 7.4E+02 0.016 24.3 11.4 71 74-144 43-123 (259)
63 PF03169 OPT: OPT oligopeptide 22.4 1.1E+03 0.023 26.0 18.6 85 285-369 395-489 (624)
64 PF05052 MerE: MerE protein; 22.3 2.8E+02 0.0061 22.0 5.4 31 112-145 38-68 (75)
65 PF11990 DUF3487: Protein of u 22.1 5.2E+02 0.011 22.4 8.9 41 89-129 11-51 (121)
66 PRK09757 PTS system N-acetylga 21.9 7.8E+02 0.017 24.3 10.7 37 295-331 61-106 (267)
67 TIGR02212 lolCE lipoprotein re 21.5 6.9E+02 0.015 25.2 10.0 22 288-309 319-340 (411)
68 PRK00523 hypothetical protein; 21.5 2.3E+02 0.0049 22.5 4.8 26 353-378 10-35 (72)
69 PRK12600 putative monovalent c 21.4 4.7E+02 0.01 21.6 7.3 52 318-369 31-82 (94)
70 COG2119 Predicted membrane pro 20.7 4.8E+02 0.01 24.6 7.5 50 100-149 36-85 (190)
71 PRK10711 hypothetical protein; 20.1 8E+02 0.017 23.8 14.5 30 344-373 141-170 (231)
72 PF11368 DUF3169: Protein of u 20.1 7.8E+02 0.017 23.6 19.1 25 102-126 9-33 (248)
73 COG1968 BacA Undecaprenyl pyro 20.1 8.7E+02 0.019 24.2 16.7 74 311-384 177-255 (270)
No 1
>COG0730 Predicted permeases [General function prediction only]
Probab=99.77 E-value=9.6e-17 Score=155.97 Aligned_cols=194 Identities=22% Similarity=0.330 Sum_probs=159.9
Q ss_pred hhhHHHHHHHHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHhhh
Q 014392 71 WPVSMIMGAAVSTVYYNLKLRHPTLDMPIIDYDLALLIQPMLMLGISIGVAFNVIFADWMVTVLLIVLFIGTSTKAFLKG 150 (425)
Q Consensus 71 ~~~~~I~G~sl~~~~~n~~~rHP~~~~plIdy~lalll~P~~llG~~iGv~ln~~~P~~~l~il~~ill~~~s~k~~~kg 150 (425)
...+.++.+++.+.+.+.|++| +||+.++.+.+..++|+.+|+.+...+|+..+...+.+++++.+.+++++.
T Consensus 49 t~l~~~~~~~~~~~~~~~k~~~-------v~~~~~~~l~~~~~~G~~lG~~l~~~~~~~~l~~~~~~~ll~~~~~~~~~~ 121 (258)
T COG0730 49 TSLLAVLFTSLSSALAYLKRGN-------VDWKLALILLLGALIGAFLGALLALLLPAELLKLLFGLLLLLLALYMLLGP 121 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC-------ccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3337777888888888888855 999999999999999999999999999999999999999999999988763
Q ss_pred hhhhhHHHHHHHHHHHhhcCCCCCCCcccccCCCCCCCCCCCCCCCchhhhhhhcchhHHHHHHHHHHHHHHHHHhhhcc
Q 014392 151 VETWKRETILKKEAARCLGSNGAGAGEVEYKSLPSGPRSGPQKDAMEPEVTILENINWKELGLLVFVWVAFLGLQIAKNH 230 (425)
Q Consensus 151 ~~~~kkE~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~l~~~i~k~~ 230 (425)
.+ .++|. +. ++. .++.
T Consensus 122 ~~-~~~~~----------------------~~--------------~~~------~~~~--------------------- 137 (258)
T COG0730 122 RL-AKAED----------------------RA--------------ARL------RPLL--------------------- 137 (258)
T ss_pred cc-ccccc----------------------cc--------------ccc------Ccch---------------------
Confidence 21 00000 00 000 0001
Q ss_pred cCccchHHHHHHHhhhHHHHHHHHHHHHHHHhcccccccCCCCCCcchHHHHHHHHHHHHHHHHHhhhccccchhhHHHH
Q 014392 231 TASCSIVYWVLDLLQIPVSLVVSLYEAISLYKGRRVIASKGDDGKSFRVFQLVSYCAFGVLAGIVGGLLGLGGGFIMGPL 310 (425)
Q Consensus 231 ~~~Cs~~yw~l~~l~~pv~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~aG~vsGl~GiGGG~i~vPl 310 (425)
.......|+++|+++|++|+|||...+|.
T Consensus 138 ---------------------------------------------------~~~~~~~g~~~G~~sG~~G~GgG~~~vp~ 166 (258)
T COG0730 138 ---------------------------------------------------FALALLIGFLAGFLSGLFGVGGGFGIVPA 166 (258)
T ss_pred ---------------------------------------------------hHHHHHHHHHHHHHHhcccCCchHHHHHH
Confidence 01233568899999999999999999999
Q ss_pred H-HHcCCChhHHHHHHHHHHHHHhHHHHHHHHH-cCCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH
Q 014392 311 F-LELGVPPQVSSATATFAMTFSSSMSVVEYYL-LKRFPVPYALYFVAVATIAAFVGQHVVRKLIILLGRASLIIFIL 386 (425)
Q Consensus 311 L-l~~g~~~~~A~aTs~~~~~~~s~~~~~~~~~-~g~v~~~~~~~l~~~~~iGa~lGa~l~~~l~~~~lr~~~~v~ll 386 (425)
+ ...+.|.+.+++|+.+..++++..+...|.. .|++||..+..+.+++++|+++|++++++++++.+|+.+..+++
T Consensus 167 l~~~~~~~~~~~~~ts~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~g~~~G~~lG~~l~~~~~~~~lr~~~~~~~~ 244 (258)
T COG0730 167 LLLLLLLPLKLAVATSLAIILNTASNGAALYLFALGAVDWPLALLLAVGSILGAYLGARLARRLSPKVLRRLFALVLL 244 (258)
T ss_pred HHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9 4678999999999999999999999999999 69999999889999999999999999999999999988876543
No 2
>PRK10621 hypothetical protein; Provisional
Probab=99.77 E-value=7.1e-17 Score=157.90 Aligned_cols=195 Identities=16% Similarity=0.124 Sum_probs=157.2
Q ss_pred Ccccchhh--HHHHHHHHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHH
Q 014392 66 GYHHVWPV--SMIMGAAVSTVYYNLKLRHPTLDMPIIDYDLALLIQPMLMLGISIGVAFNVIFADWMVTVLLIVLFIGTS 143 (425)
Q Consensus 66 ~~~~~~~~--~~I~G~sl~~~~~n~~~rHP~~~~plIdy~lalll~P~~llG~~iGv~ln~~~P~~~l~il~~ill~~~s 143 (425)
+++.+.+. +.++.++++..+.+.|++| +||+.++.+.+..++|+.+|+.+...+|+..+..++.++++..+
T Consensus 46 ~~~~Av~tsl~~~~~~~~~~~~~~~~~~~-------v~~~~~~~l~~~~l~Ga~~G~~l~~~l~~~~l~~~~~~~ll~~~ 118 (266)
T PRK10621 46 SPAQALATNKLQACGGSFSASLYFIRRKV-------VNLADQKLNIAMTFVGSMSGALLVQYVQADILRQILPILVIGIG 118 (266)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 35556555 3455778778777777744 99999999999999999999999999999999999999988888
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHhhcCCCCCCCcccccCCCCCCCCCCCCCCCchhhhhhhcchhHHHHHHHHHHHHHHH
Q 014392 144 TKAFLKGVETWKRETILKKEAARCLGSNGAGAGEVEYKSLPSGPRSGPQKDAMEPEVTILENINWKELGLLVFVWVAFLG 223 (425)
Q Consensus 144 ~k~~~kg~~~~kkE~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~l~ 223 (425)
.+++++. ++++.. + +. + +++
T Consensus 119 ~~~l~~~----~~~~~~--------------------~--~~-----------~----------~~~------------- 138 (266)
T PRK10621 119 LYFLLMP----KLGEED--------------------R--QR-----------R----------LYG------------- 138 (266)
T ss_pred HHHHHCC----cccccc--------------------c--cc-----------c----------ccc-------------
Confidence 7776431 100000 0 00 0 000
Q ss_pred HHhhhcccCccchHHHHHHHhhhHHHHHHHHHHHHHHHhcccccccCCCCCCcchHHHHHHHHHHHHHHHHHhhhccccc
Q 014392 224 LQIAKNHTASCSIVYWVLDLLQIPVSLVVSLYEAISLYKGRRVIASKGDDGKSFRVFQLVSYCAFGVLAGIVGGLLGLGG 303 (425)
Q Consensus 224 ~~i~k~~~~~Cs~~yw~l~~l~~pv~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~aG~vsGl~GiGG 303 (425)
.......|+++|+++|++|+||
T Consensus 139 ----------------------------------------------------------~~~~~~~G~~~G~lsG~~G~Gg 160 (266)
T PRK10621 139 ----------------------------------------------------------LPFALIAGGCVGFYDGFFGPGA 160 (266)
T ss_pred ----------------------------------------------------------hHHHHHHHHHHHHHhcccchhH
Confidence 0012246888999999999999
Q ss_pred hhhHHHHH-HHcCCChhHHHHHHHHHHHHHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHH
Q 014392 304 GFIMGPLF-LELGVPPQVSSATATFAMTFSSSMSVVEYYLLKRFPVPYALYFVAVATIAAFVGQHVVRKLIILLGRASLI 382 (425)
Q Consensus 304 G~i~vPlL-l~~g~~~~~A~aTs~~~~~~~s~~~~~~~~~~g~v~~~~~~~l~~~~~iGa~lGa~l~~~l~~~~lr~~~~ 382 (425)
|++++|.+ ..++.|+++|++|+.+..++++..+...|...|++||..+..+.+++++|+++|+++.++++++.+|+.+.
T Consensus 161 G~~~v~~l~~~~~~~~~~a~~ts~~~~~~~~~~~~~~~~~~G~v~~~~~l~l~~g~~~G~~lG~~l~~~~~~~~lr~~~~ 240 (266)
T PRK10621 161 GSFYALAFVTLCGFNLAKATAHAKVLNATSNIGGLLLFILGGKVIWATGFVMLVGQFLGARLGARLVLSKGQKLIRPMIV 240 (266)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHHHHHHHHHHHHHHHcCchHhHHHHH
Confidence 99999877 57899999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HHH
Q 014392 383 IFI 385 (425)
Q Consensus 383 v~l 385 (425)
.++
T Consensus 241 ~ll 243 (266)
T PRK10621 241 IVS 243 (266)
T ss_pred HHH
Confidence 664
No 3
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=99.70 E-value=7.2e-16 Score=147.36 Aligned_cols=195 Identities=23% Similarity=0.355 Sum_probs=152.2
Q ss_pred cccchhh--HHHHHHHHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHH
Q 014392 67 YHHVWPV--SMIMGAAVSTVYYNLKLRHPTLDMPIIDYDLALLIQPMLMLGISIGVAFNVIFADWMVTVLLIVLFIGTST 144 (425)
Q Consensus 67 ~~~~~~~--~~I~G~sl~~~~~n~~~rHP~~~~plIdy~lalll~P~~llG~~iGv~ln~~~P~~~l~il~~ill~~~s~ 144 (425)
++.+.+. .....+++.+.+.+.|+ ..+||+....+.+..++|+.+|+.+...+|+..+..++.++++..+.
T Consensus 33 ~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~~~~g~~iG~~l~~~l~~~~l~~~~~~~ll~~~~ 105 (240)
T PF01925_consen 33 PKQAVATSLFINLFTSLIAALRHRKH-------GNIDWKIVLPLIIGALIGVVIGAWLLSLLPDDILKLIFGLFLLLLAI 105 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc-------cccchhhhhhhhhHhHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH
Confidence 4444444 44444555555544333 46999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHhhcCCCCCCCcccccCCCCCCCCCCCCCCCchhhhhhhcchhHHHHHHHHHHHHHHHH
Q 014392 145 KAFLKGVETWKRETILKKEAARCLGSNGAGAGEVEYKSLPSGPRSGPQKDAMEPEVTILENINWKELGLLVFVWVAFLGL 224 (425)
Q Consensus 145 k~~~kg~~~~kkE~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~l~~ 224 (425)
+++.|.. +++.+. .. .+ .+
T Consensus 106 ~~~~~~~---~~~~~~-----------------------~~---------~~-----------~~--------------- 124 (240)
T PF01925_consen 106 YMLLKKR---RKTPKS-----------------------RS---------SP-----------PK--------------- 124 (240)
T ss_pred HHHhccc---cccccc-----------------------cc---------cc-----------cc---------------
Confidence 8876521 000000 00 00 00
Q ss_pred HhhhcccCccchHHHHHHHhhhHHHHHHHHHHHHHHHhcccccccCCCCCCcchHHHHHHHHHHHHH-HHHHhhhccccc
Q 014392 225 QIAKNHTASCSIVYWVLDLLQIPVSLVVSLYEAISLYKGRRVIASKGDDGKSFRVFQLVSYCAFGVL-AGIVGGLLGLGG 303 (425)
Q Consensus 225 ~i~k~~~~~Cs~~yw~l~~l~~pv~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~-aG~vsGl~GiGG 303 (425)
.......|.+ +|+++|++|+||
T Consensus 125 ---------------------------------------------------------~~~~~~~g~~~~G~~~G~~g~gg 147 (240)
T PF01925_consen 125 ---------------------------------------------------------RWLLFLLGGLFIGFLSGLFGIGG 147 (240)
T ss_pred ---------------------------------------------------------hhhhhhhhHHHhhHHHhhhhccc
Confidence 0112233444 999999999999
Q ss_pred hhhHHHHHH-HcCCChhHHHHHHHHHHHHHhHHHHHHHHHcCCcCHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHhHH
Q 014392 304 GFIMGPLFL-ELGVPPQVSSATATFAMTFSSSMSVVEYYLLKRFPVPYALY---FVAVATIAAFVGQHVVRKLIILLGRA 379 (425)
Q Consensus 304 G~i~vPlLl-~~g~~~~~A~aTs~~~~~~~s~~~~~~~~~~g~v~~~~~~~---l~~~~~iGa~lGa~l~~~l~~~~lr~ 379 (425)
|.+.+|++. ..|.|++++.+|+.++.++++..+...|...|.+|++.... +.+++++|+.+|.++.++++++..|+
T Consensus 148 g~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~lG~~~~~~i~~~~~~~ 227 (240)
T PF01925_consen 148 GPLLVPLLLYLFGLDPKKARATSAFFFFFSSVAALISFLILGDVDWPMLLLSLILLPGAFLGAFLGAKLARKIPQKVFRR 227 (240)
T ss_pred cccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999996 47999999999999999999999999999999999997777 99999999999999999999999998
Q ss_pred HHHHHHH
Q 014392 380 SLIIFIL 386 (425)
Q Consensus 380 ~~~v~ll 386 (425)
.+.++++
T Consensus 228 ~~~~ll~ 234 (240)
T PF01925_consen 228 IFLILLL 234 (240)
T ss_pred HHHHHHH
Confidence 8776653
No 4
>PRK10621 hypothetical protein; Provisional
Probab=99.48 E-value=7.1e-13 Score=129.71 Aligned_cols=105 Identities=21% Similarity=0.280 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHcCCChhHHHHHHHHHHHHHhHHHHHHHHHcCCcCHHHHHHHHHHHH
Q 014392 280 FQLVSYCAFGVLAGIVGGLLGLGGGFIMGPLFLELGVPPQVSSATATFAMTFSSSMSVVEYYLLKRFPVPYALYFVAVAT 359 (425)
Q Consensus 280 ~~~~~~~~~G~~aG~vsGl~GiGGG~i~vPlLl~~g~~~~~A~aTs~~~~~~~s~~~~~~~~~~g~v~~~~~~~l~~~~~ 359 (425)
.....+..+|+++|+++|+.| |||.+.+|+|..+|+||++|++|+.+.+++++..+...|.+++++||+....+.++++
T Consensus 10 ~~~~~l~~~g~~aG~l~gl~G-GGg~i~vP~L~~~g~~~~~Av~tsl~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~l 88 (266)
T PRK10621 10 LLLGVLFFVAMLAGFIDSIAG-GGGLLTIPALLAAGMSPAQALATNKLQACGGSFSASLYFIRRKVVNLADQKLNIAMTF 88 (266)
T ss_pred HHHHHHHHHHHHHHHHhhhcc-ccHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 344566778999999999999 9999999999888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHhHHHHHHHH
Q 014392 360 IAAFVGQHVVRKLIILLGRASLIIFI 385 (425)
Q Consensus 360 iGa~lGa~l~~~l~~~~lr~~~~v~l 385 (425)
+|+++|+.++.++|++.+|..+.+++
T Consensus 89 ~Ga~~G~~l~~~l~~~~l~~~~~~~l 114 (266)
T PRK10621 89 VGSMSGALLVQYVQADILRQILPILV 114 (266)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999999999997776554
No 5
>COG0730 Predicted permeases [General function prediction only]
Probab=99.44 E-value=2.2e-12 Score=125.34 Aligned_cols=105 Identities=30% Similarity=0.444 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHhhhccccchhhHHHHHHHcCCChhHHHHHHHHHHHHHhHHHHHHHHHcCCcCHHHHHHHHHHHHH
Q 014392 281 QLVSYCAFGVLAGIVGGLLGLGGGFIMGPLFLELGVPPQVSSATATFAMTFSSSMSVVEYYLLKRFPVPYALYFVAVATI 360 (425)
Q Consensus 281 ~~~~~~~~G~~aG~vsGl~GiGGG~i~vPlLl~~g~~~~~A~aTs~~~~~~~s~~~~~~~~~~g~v~~~~~~~l~~~~~i 360 (425)
....+...|+++|+++|++|+|||.+.+|.|+.+++||++|.+|++....+++..+...|+++|++||+.+..+..++++
T Consensus 6 ~~~~~~~~g~l~g~i~g~~G~Ggg~i~~P~L~~~~~~~~~a~~t~l~~~~~~~~~~~~~~~k~~~v~~~~~~~l~~~~~~ 85 (258)
T COG0730 6 TLLLLFLVGLLAGFISGLAGGGGGLLTVPALLLLGLPPAAALGTSLLAVLFTSLSSALAYLKRGNVDWKLALILLLGALI 85 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHH
Confidence 45677889999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHhHHHHHHHH
Q 014392 361 AAFVGQHVVRKLIILLGRASLIIFI 385 (425)
Q Consensus 361 Ga~lGa~l~~~l~~~~lr~~~~v~l 385 (425)
|+.+|+.+..+++++.++..+.+++
T Consensus 86 G~~lG~~l~~~~~~~~l~~~~~~~l 110 (258)
T COG0730 86 GAFLGALLALLLPAELLKLLFGLLL 110 (258)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999999999997766554
No 6
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=99.20 E-value=1.4e-10 Score=110.79 Aligned_cols=100 Identities=26% Similarity=0.421 Sum_probs=92.5
Q ss_pred HHHHHHHHHHhhhccccchhhHHHHHHHcCCChhHHHHHHHHHHHHHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHH
Q 014392 286 CAFGVLAGIVGGLLGLGGGFIMGPLFLELGVPPQVSSATATFAMTFSSSMSVVEYYLLKRFPVPYALYFVAVATIAAFVG 365 (425)
Q Consensus 286 ~~~G~~aG~vsGl~GiGGG~i~vPlLl~~g~~~~~A~aTs~~~~~~~s~~~~~~~~~~g~v~~~~~~~l~~~~~iGa~lG 365 (425)
.++++++|++.|..|.|||.+.+|+|..+ +||++|++|+.+...+++..++..|++++++||+....+.+++++|+.+|
T Consensus 2 ~~~~~~ag~v~g~~G~g~g~i~~p~l~~~-l~~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~iG 80 (240)
T PF01925_consen 2 LLIGFLAGFVSGITGFGGGLIAVPILILF-LPPKQAVATSLFINLFTSLIAALRHRKHGNIDWKIVLPLIIGALIGVVIG 80 (240)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhhhhhHhHHHHHHH
Confidence 46789999999999999999999999665 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHhHHHHHHHHH
Q 014392 366 QHVVRKLIILLGRASLIIFIL 386 (425)
Q Consensus 366 a~l~~~l~~~~lr~~~~v~ll 386 (425)
+++..++|++..+..+.++++
T Consensus 81 ~~l~~~l~~~~l~~~~~~~ll 101 (240)
T PF01925_consen 81 AWLLSLLPDDILKLIFGLFLL 101 (240)
T ss_pred HhhhcchhHHHHHHHHHHHHH
Confidence 999999999987776666553
No 7
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=80.50 E-value=8.6 Score=37.85 Aligned_cols=65 Identities=20% Similarity=0.147 Sum_probs=52.7
Q ss_pred cCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 014392 91 RHPTLDMPIIDYDLALLIQPMLMLGISIGVAFNVIFADWMVTVLLIVLFIGTSTKAFLKGVETWKRET 158 (425)
Q Consensus 91 rHP~~~~plIdy~lalll~P~~llG~~iGv~ln~~~P~~~l~il~~ill~~~s~k~~~kg~~~~kkE~ 158 (425)
|||. -++=---..-+.-|+++++.+|=..-.++|...-..+=.+++.+-+.|+++.|+++-+.|.
T Consensus 95 r~~R---~~Vf~Ga~~AL~lMTiLS~~lG~aap~lipr~~T~~~~t~LF~iFGlkmL~eg~~~~~~~~ 159 (294)
T KOG2881|consen 95 RYPR---LTVFSGAMSALALMTILSVLLGWAAPNLIPRKYTYYLATALFLIFGLKMLKEGWEMSPSEG 159 (294)
T ss_pred hccc---hhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Confidence 5543 4555566667788999999999999889999888888888899999999999877766554
No 8
>PRK11469 hypothetical protein; Provisional
Probab=80.42 E-value=51 Score=30.80 Aligned_cols=47 Identities=13% Similarity=0.318 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHhhhh
Q 014392 104 LALLIQPMLMLGISIGVAFNVIFADWMVTVLLIVLFIGTSTKAFLKGV 151 (425)
Q Consensus 104 lalll~P~~llG~~iGv~ln~~~P~~~l~il~~ill~~~s~k~~~kg~ 151 (425)
.+..=.-|..+|...|..+..++|++--.+-+. +|.+.+.+|.+++.
T Consensus 43 ~g~~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~-lL~~lG~~mi~e~~ 89 (188)
T PRK11469 43 FGAVETLTPLIGWGMGMLASRFVLEWNHWIAFV-LLIFLGGRMIIEGF 89 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 344445677888889999999998876444444 55778888988654
No 9
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=72.91 E-value=86 Score=29.63 Aligned_cols=52 Identities=8% Similarity=0.165 Sum_probs=38.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHhhhh
Q 014392 100 IDYDLALLIQPMLMLGISIGVAFNVIFADWMVTVLLIVLFIGTSTKAFLKGV 151 (425)
Q Consensus 100 Idy~lalll~P~~llG~~iGv~ln~~~P~~~l~il~~ill~~~s~k~~~kg~ 151 (425)
...-+++.-.-|..+|..+|-.+..++|.++-..+=.++|++.+.++++++.
T Consensus 32 ~~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~~~~ 83 (206)
T TIGR02840 32 SNLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIYNAF 83 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556788889999999999998865555666677888989988764
No 10
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=63.59 E-value=13 Score=31.39 Aligned_cols=17 Identities=35% Similarity=1.017 Sum_probs=12.2
Q ss_pred cchhHHHHHHHHHHHHHHHH
Q 014392 205 NINWKELGLLVFVWVAFLGL 224 (425)
Q Consensus 205 ~~~~~~~~~L~~~~~~~l~~ 224 (425)
..||. +|++.|++|.+-
T Consensus 84 ~LPW~---LL~lSW~gF~~Y 100 (103)
T PF11169_consen 84 WLPWG---LLVLSWIGFIAY 100 (103)
T ss_pred chhHH---HHHHHHHHHHHH
Confidence 35665 888899888653
No 11
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=58.47 E-value=1.9e+02 Score=28.41 Aligned_cols=89 Identities=10% Similarity=-0.036 Sum_probs=56.3
Q ss_pred hhccccchhhHHHHHHHcCCChhHHHHHHHHHHHHHhHHHHHHHHHcC-C--c---CHHHHHHHHHHHHHHHHHHHHHHH
Q 014392 297 GLLGLGGGFIMGPLFLELGVPPQVSSATATFAMTFSSSMSVVEYYLLK-R--F---PVPYALYFVAVATIAAFVGQHVVR 370 (425)
Q Consensus 297 Gl~GiGGG~i~vPlLl~~g~~~~~A~aTs~~~~~~~s~~~~~~~~~~g-~--v---~~~~~~~l~~~~~iGa~lGa~l~~ 370 (425)
-+=|+.-.-..+-..+..|++.+.|.-=|-.+..+....+...-..+. . . ++.....-.+.+++.+++.-+...
T Consensus 158 l~PGiSRSG~Ti~~~l~~G~~r~~A~~fSFllsiP~ilga~~l~~~~~~~~~~~~~~~~~~~ig~~~afv~g~l~i~~ll 237 (259)
T PF02673_consen 158 LIPGISRSGATITAGLLLGLDREEAARFSFLLSIPAILGAGLLELKDLFSAGLDSGSWPPLLIGFVVAFVVGYLAIKWLL 237 (259)
T ss_pred cCCCcChHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456776666666667789999999999999988888777766444331 1 2 333333344445555555555555
Q ss_pred HhHHHHhHHHHHHHH
Q 014392 371 KLIILLGRASLIIFI 385 (425)
Q Consensus 371 ~l~~~~lr~~~~v~l 385 (425)
++.++..-+.|..|.
T Consensus 238 ~~~~~~~~~~F~~Y~ 252 (259)
T PF02673_consen 238 RFLKRRKLRPFAIYR 252 (259)
T ss_pred HHHhhCCceeehhHH
Confidence 555555444566554
No 12
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=52.72 E-value=2.4e+02 Score=27.79 Aligned_cols=87 Identities=18% Similarity=0.219 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHhhhccccchhhHHHHHHHcCCChhHHHHHHHHHHHHHhHHHHHHHHHcCCcCHHHHHHHHHHHHHH
Q 014392 282 LVSYCAFGVLAGIVGGLLGLGGGFIMGPLFLELGVPPQVSSATATFAMTFSSSMSVVEYYLLKRFPVPYALYFVAVATIA 361 (425)
Q Consensus 282 ~~~~~~~G~~aG~vsGl~GiGGG~i~vPlLl~~g~~~~~A~aTs~~~~~~~s~~~~~~~~~~g~v~~~~~~~l~~~~~iG 361 (425)
.+.++.+|++++.--=+=|+.|.+++. .+|.=.....+-+.+.. -|+....++.+|.++|
T Consensus 142 ~~~lf~~G~ia~~AMIlPGiSGS~iLl----ilG~Y~~vl~ai~~~~~----------------~~~~~L~~f~~G~~~G 201 (257)
T PF04018_consen 142 YLYLFLAGAIAACAMILPGISGSFILL----ILGLYEPVLSAISDLID----------------SNIPVLIPFGIGVVIG 201 (257)
T ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHH----HHHhHHHHHHHHHHhhh----------------hhhHHHHHHHHHHHHH
Confidence 455667777777666667887776643 33442222222222221 4778888999999999
Q ss_pred HHHHHHHHHHhHHHHhHHHHHHHHHHHH
Q 014392 362 AFVGQHVVRKLIILLGRASLIIFILAFM 389 (425)
Q Consensus 362 a~lGa~l~~~l~~~~lr~~~~v~ll~~~ 389 (425)
-.+-+|+.+++-+++.+..+... ++.+
T Consensus 202 i~~~skll~~ll~~~~~~t~~~i-~Glv 228 (257)
T PF04018_consen 202 ILLFSKLLSYLLKRYRSQTYAFI-IGLV 228 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 99999999999999887666543 3443
No 13
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=51.59 E-value=68 Score=23.03 Aligned_cols=7 Identities=29% Similarity=1.089 Sum_probs=3.4
Q ss_pred hHHHHHH
Q 014392 127 ADWMVTV 133 (425)
Q Consensus 127 P~~~l~i 133 (425)
|.|+-++
T Consensus 2 p~wlt~i 8 (49)
T PF11044_consen 2 PTWLTTI 8 (49)
T ss_pred chHHHHH
Confidence 5554444
No 14
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=50.82 E-value=3.4e+02 Score=28.97 Aligned_cols=32 Identities=34% Similarity=0.476 Sum_probs=21.7
Q ss_pred chhhHHHHHH----HcCCChhHHHHHHH-HHHHHHhH
Q 014392 303 GGFIMGPLFL----ELGVPPQVSSATAT-FAMTFSSS 334 (425)
Q Consensus 303 GG~i~vPlLl----~~g~~~~~A~aTs~-~~~~~~s~ 334 (425)
|=++..|-|+ ..++.|+.|++|+. +..++.-+
T Consensus 357 Gf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl 393 (448)
T COG2271 357 GFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYL 393 (448)
T ss_pred HHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHH
Confidence 3456667663 47889999999987 44455544
No 15
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=50.59 E-value=1.6e+02 Score=30.34 Aligned_cols=84 Identities=17% Similarity=0.286 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHcCCChhHHHHHHHHHHHHHhHHHHHHHHHcCCcCHHHHHHHHHHH
Q 014392 279 VFQLVSYCAFGVLAGIVGGLLGLGGGFIMGPLFLELGVPPQVSSATATFAMTFSSSMSVVEYYLLKRFPVPYALYFVAVA 358 (425)
Q Consensus 279 ~~~~~~~~~~G~~aG~vsGl~GiGGG~i~vPlLl~~g~~~~~A~aTs~~~~~~~s~~~~~~~~~~g~v~~~~~~~l~~~~ 358 (425)
..++......++..|.+..+.|+..+.++.+.++. . .+.-.+...+.++-.+....-.
T Consensus 8 ~~~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a---------------~-------~v~~~~~~~l~~P~~l~~~~q~ 65 (352)
T COG3180 8 ILQWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLA---------------G-------IVAGLRGLTLPLPRGLFKAGQV 65 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH---------------H-------HHHHhccccccCChHHHHHHHH
Confidence 44556666778888888888888888777733310 0 1111233345556666666666
Q ss_pred HHHHHHHHHHHHHhHHHHhHHHHHHH
Q 014392 359 TIAAFVGQHVVRKLIILLGRASLIIF 384 (425)
Q Consensus 359 ~iGa~lGa~l~~~l~~~~lr~~~~v~ 384 (425)
++|..+|+.+....-+...+....+.
T Consensus 66 ilG~~ig~~~t~s~l~~l~~~w~~~~ 91 (352)
T COG3180 66 ILGIMIGASLTPSVLDTLKSNWPIVL 91 (352)
T ss_pred HHHHHHhhhcCHHHHHHHHHcccHHH
Confidence 67777777776666555555444333
No 16
>PTZ00370 STEVOR; Provisional
Probab=48.76 E-value=34 Score=34.15 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHch---HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 014392 113 MLGISIGVAFNVIFA---DWMVTVLLIVLFIGTSTKAFLKGVETWKRETI 159 (425)
Q Consensus 113 llG~~iGv~ln~~~P---~~~l~il~~ill~~~s~k~~~kg~~~~kkE~~ 159 (425)
+.|+..|...+.+.| ..+++++++++|+..=...++|.++.||.|.+
T Consensus 242 lagtAAtaAsaaF~Pygiaalvllil~vvliilYiwlyrrRK~swkhe~k 291 (296)
T PTZ00370 242 LAGTAASAASSAFYPYGIAALVLLILAVVLIILYIWLYRRRKNSWKHECK 291 (296)
T ss_pred ccchHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Confidence 456667777777776 23445555555555555577888889998854
No 17
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=48.27 E-value=3e+02 Score=27.71 Aligned_cols=85 Identities=18% Similarity=0.271 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHcCCChhHHHHHHHHHHHHHhHHHHHHHHHcCCcCHHHHHHHHHH
Q 014392 278 RVFQLVSYCAFGVLAGIVGGLLGLGGGFIMGPLFLELGVPPQVSSATATFAMTFSSSMSVVEYYLLKRFPVPYALYFVAV 357 (425)
Q Consensus 278 ~~~~~~~~~~~G~~aG~vsGl~GiGGG~i~vPlLl~~g~~~~~A~aTs~~~~~~~s~~~~~~~~~~g~v~~~~~~~l~~~ 357 (425)
+...+.....++.+.|.+.-.+++=.+.++.|++.. +...........+|..+....-
T Consensus 153 ~~~~l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~----------------------a~~~~~~~~~~~~P~~l~~~aq 210 (318)
T PF05145_consen 153 SWLWLALLALAALAGGLLARRLRIPAPWLLGPMLVS----------------------AILNLFGGPSFSLPPWLVNAAQ 210 (318)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHH----------------------HHHHHHhCCCCCCCHHHHHHHH
Confidence 344556666677777777777777777777776631 0111111224555555566666
Q ss_pred HHHHHHHHHHHHHHhHHHHhHHHHHHH
Q 014392 358 ATIAAFVGQHVVRKLIILLGRASLIIF 384 (425)
Q Consensus 358 ~~iGa~lGa~l~~~l~~~~lr~~~~v~ 384 (425)
-++|..+|.++.+...+...|......
T Consensus 211 v~iG~~iG~~f~~~~l~~~~~~~~~~l 237 (318)
T PF05145_consen 211 VLIGASIGSRFTRETLRELRRLLPPAL 237 (318)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHH
Confidence 677888888887766665555444433
No 18
>PF07698 7TM-7TMR_HD: 7TM receptor with intracellular HD hydrolase; InterPro: IPR011621 These bacterial 7TM receptor proteins have an intracellular domain IPR006674 from INTERPRO. This entry corresponds to the 7 helix transmembrane domain. These proteins also contain an N-terminal extracellular domain.
Probab=46.97 E-value=2.3e+02 Score=25.87 Aligned_cols=56 Identities=16% Similarity=0.300 Sum_probs=32.6
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 014392 308 GPLFLELGVPPQVSSATATFAMTFSSSMSVVEYYLLKRFPVPYALYFVAVATIAAFVGQHVVRKLIIL 375 (425)
Q Consensus 308 vPlLl~~g~~~~~A~aTs~~~~~~~s~~~~~~~~~~g~v~~~~~~~l~~~~~iGa~lGa~l~~~l~~~ 375 (425)
.|++...-++++.|..++.+..+..+... .-|..... ..++++.+|+...++..+|
T Consensus 72 ~~~l~~~l~~~~~ai~~~~~~sl~~~~~~--------~~~~~~~~----~~l~~~~~~~~~~~~~~~R 127 (194)
T PF07698_consen 72 AAMLLTILIDPRLAILASLFLSLLASLLF--------GFDFEFFL----YSLVSGIVAIFSVRRIRSR 127 (194)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHh--------cccHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 33444455678888887777777665553 33444444 4455556666666666554
No 19
>PF04066 MrpF_PhaF: Multiple resistance and pH regulation protein F (MrpF / PhaF); InterPro: IPR007208 Members of the PhaF/MrpF family are predicted to be integral membrane proteins with three transmembrane regions, involved in regulation of pH. PhaF is part of a potassium efflux system involved in pH regulation. It is also involved in symbiosis in Rhizobium meliloti (Sinorhizobium meliloti) []. MrpF is a part of a Na+/H+ antiporter complex, also involved in pH homeostasis. MrpF is thought to be an efflux system for Na+ and cholate []. The Mrp system in Gram-positive species may also have primary energisation capacities [].; GO: 0015075 ion transmembrane transporter activity, 0034220 ion transmembrane transport, 0016021 integral to membrane
Probab=44.36 E-value=1.2e+02 Score=22.42 Aligned_cols=53 Identities=8% Similarity=0.088 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 014392 318 PQVSSATATFAMTFSSSMSVVEYYLLKRFPVPYALYFVAVATIAAFVGQHVVR 370 (425)
Q Consensus 318 ~~~A~aTs~~~~~~~s~~~~~~~~~~g~v~~~~~~~l~~~~~iGa~lGa~l~~ 370 (425)
+...+|...+..........+........-.+.++.+.+.+++|+..-++...
T Consensus 2 ~DRvva~d~~~~~~v~~l~l~a~~~~~~~~lDialv~all~Fvgtva~arfl~ 54 (55)
T PF04066_consen 2 ADRVVALDLISTLIVALLALLAIITGRPFYLDIALVYALLGFVGTVAFARFLE 54 (55)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34567777888888888888888887777778888888888888877766543
No 20
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=43.19 E-value=1.1e+02 Score=31.74 Aligned_cols=12 Identities=33% Similarity=0.952 Sum_probs=9.3
Q ss_pred HhhhcCCCCCCC
Q 014392 87 NLKLRHPTLDMP 98 (425)
Q Consensus 87 n~~~rHP~~~~p 98 (425)
.+|+|||+.+||
T Consensus 369 ~lr~~~p~~~rp 380 (442)
T TIGR00908 369 TLRIRRPDMERP 380 (442)
T ss_pred HHHhcCCCCCCC
Confidence 358889998776
No 21
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=43.10 E-value=2.4e+02 Score=26.55 Aligned_cols=27 Identities=15% Similarity=0.110 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHchH
Q 014392 102 YDLALLIQPMLMLGISIGVAFNVIFAD 128 (425)
Q Consensus 102 y~lalll~P~~llG~~iGv~ln~~~P~ 128 (425)
.+-.++-.-.+.+|..+|..+..++|.
T Consensus 140 ~rA~~~~~~~L~~G~~lGs~l~~~l~~ 166 (194)
T PF11833_consen 140 GRAFLWTLGGLVVGLILGSLLASWLPV 166 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 566666777788999999999887744
No 22
>PRK11281 hypothetical protein; Provisional
Probab=40.44 E-value=7.2e+02 Score=29.81 Aligned_cols=79 Identities=11% Similarity=0.248 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHh--hhcCCCCCCCcccH--HHHHHHHHHHHHHHH-HHHHH-HHHchHHHHHHHHHHHHHHHHHHHH
Q 014392 74 SMIMGAAVSTVYYNL--KLRHPTLDMPIIDY--DLALLIQPMLMLGIS-IGVAF-NVIFADWMVTVLLIVLFIGTSTKAF 147 (425)
Q Consensus 74 ~~I~G~sl~~~~~n~--~~rHP~~~~plIdy--~lalll~P~~llG~~-iGv~l-n~~~P~~~l~il~~ill~~~s~k~~ 147 (425)
|.|.+..+..++..- ++.+.+++...+++ ...+...|..+++.. +|=+. +..+-+.++..++++++....+.+.
T Consensus 656 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~P~~l~~l~~~GY~yTa~~l~~~l~~s~~l~~~~~l~~~~~ 735 (1113)
T PRK11281 656 VIIIALALIAFLVWPLCRESWRDKESHTLRLVVRTVLTIAPIALIVLVVLGYYYTALRLIGRLIETLYLLIIWNLLYQTV 735 (1113)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555544444333322 22222233344443 345666677666554 33222 3344555555666666656556666
Q ss_pred hhhhh
Q 014392 148 LKGVE 152 (425)
Q Consensus 148 ~kg~~ 152 (425)
++++.
T Consensus 736 ~R~l~ 740 (1113)
T PRK11281 736 LRGLS 740 (1113)
T ss_pred HHHHH
Confidence 66543
No 23
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=40.02 E-value=39 Score=33.66 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHchH---HHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 014392 113 MLGISIGVAFNVIFAD---WMVTVLLIVLFIGTSTKAFLKGVETWKRE 157 (425)
Q Consensus 113 llG~~iGv~ln~~~P~---~~l~il~~ill~~~s~k~~~kg~~~~kkE 157 (425)
+.|+..|...+.+.|= .+++++++++|+..=...++|.++.||.|
T Consensus 246 lagtAAtaA~aaF~Pcgiaalvllil~vvliiLYiWlyrrRK~swkhe 293 (295)
T TIGR01478 246 DAERAASAATSTFLPYGIAALVLIILTVVLIILYIWLYRRRKKSWKHE 293 (295)
T ss_pred ccchHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 3466667777777762 34445555555554445677777888776
No 24
>COG3619 Predicted membrane protein [Function unknown]
Probab=39.78 E-value=1.1e+02 Score=29.65 Aligned_cols=64 Identities=11% Similarity=0.092 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHhhhcC-CCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Q 014392 75 MIMGAAVSTVYYNLKLRH-PTLDMPIIDYDLALLIQPMLMLGISIGVAFNVIFADWMVTVLLIVL 138 (425)
Q Consensus 75 ~I~G~sl~~~~~n~~~rH-P~~~~plIdy~lalll~P~~llG~~iGv~ln~~~P~~~l~il~~il 138 (425)
+++-+.+.+.-.++-+.- +-++..+.||-.-..+.+..+.|+++|+++...+-++-+...-...
T Consensus 143 t~~TGnl~~~~~~l~~~l~~k~~~~~~~~~~~~~~il~f~~GAi~g~ll~~~~g~~al~~~~~~i 207 (226)
T COG3619 143 TYVTGNLKSAGRGLGRYLSGKDKEKLRDWLIYLSLILSFIVGAICGALLTLFFGLKALWVVAALI 207 (226)
T ss_pred hhhhhhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 334445566666663222 2225688999999999999999999999999999887765544433
No 25
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=39.34 E-value=1.1e+02 Score=24.42 Aligned_cols=34 Identities=9% Similarity=0.028 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHH
Q 014392 350 YALYFVAVATIAAFVGQHVVRKLIILLGRASLII 383 (425)
Q Consensus 350 ~~~~l~~~~~iGa~lGa~l~~~l~~~~lr~~~~v 383 (425)
....+.+...++..+|..+.+++|+++.+..-.+
T Consensus 39 ~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~ 72 (78)
T PF01169_consen 39 ATLALALATGLAVLLGSWLASRIPERYIKWVAGA 72 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 3445667788899999999999999998865443
No 26
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=39.16 E-value=3.7e+02 Score=26.10 Aligned_cols=80 Identities=15% Similarity=0.007 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhhhccccchhhHHHHH-HHcCCChhHHHHHH-HHHHHHHhHHHHHHHHHcCCcCHHHHHHHHHHHHH
Q 014392 283 VSYCAFGVLAGIVGGLLGLGGGFIMGPLF-LELGVPPQVSSATA-TFAMTFSSSMSVVEYYLLKRFPVPYALYFVAVATI 360 (425)
Q Consensus 283 ~~~~~~G~~aG~vsGl~GiGGG~i~vPlL-l~~g~~~~~A~aTs-~~~~~~~s~~~~~~~~~~g~v~~~~~~~l~~~~~i 360 (425)
+.-...|.++|.+.+++. ...+ ..+|.|........ .-+..+.+. .+.- ..|-++--.+....+.+++
T Consensus 93 ~~~Il~~~~vG~~~~i~s-------~~~la~~lgl~~~~~~Sl~pKSVTtPIAm--~is~-~iGG~psLtA~~ViitGi~ 162 (232)
T PRK04288 93 WWQILGGIVVGSVCSVLI-------IYLVAKLIQLDNAVMASMLPQAATTAIAL--PVSA-GIGGIKEITSFAVIFNAVI 162 (232)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHCcCHHHHHHHhhHhhhHHHHH--HHHH-HhCCcHHHHHHHHHHHHHH
Confidence 444455666665554433 2333 45788775443211 111111111 1111 2233444556677788889
Q ss_pred HHHHHHHHHHHh
Q 014392 361 AAFVGQHVVRKL 372 (425)
Q Consensus 361 Ga~lGa~l~~~l 372 (425)
|+.+|-.+.+.+
T Consensus 163 Gai~g~~llk~~ 174 (232)
T PRK04288 163 IYALGAKFLKLF 174 (232)
T ss_pred HHHHHHHHHHHc
Confidence 999998887765
No 27
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=39.15 E-value=3.3e+02 Score=25.76 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=19.7
Q ss_pred hhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHch
Q 014392 89 KLRHPTLDMPIIDYDLALLIQPMLMLGISIGVAFNVIFA 127 (425)
Q Consensus 89 ~~rHP~~~~plIdy~lalll~P~~llG~~iGv~ln~~~P 127 (425)
+-..|+.+.-+.||--. .+....+.+++.++.|
T Consensus 79 Kl~kp~e~~~lFdg~SL------~Ly~~~i~vYltni~~ 111 (196)
T PF08229_consen 79 KLYKPSESNKLFDGASL------VLYVFGICVYLTNIVP 111 (196)
T ss_pred HHcCCcHHhhcccchhH------HHHHHHHHHHhHhhHh
Confidence 33457777778888665 3344445566666555
No 28
>COG1967 Predicted membrane protein [Function unknown]
Probab=38.89 E-value=96 Score=30.64 Aligned_cols=74 Identities=31% Similarity=0.352 Sum_probs=51.4
Q ss_pred CCcccchhh--HHHHHHHHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHH-HHHc--------hHHHHHH
Q 014392 65 SGYHHVWPV--SMIMGAAVSTVYYNLKLRHPTLDMPIIDYDLALLIQPMLMLGISIGVAF-NVIF--------ADWMVTV 133 (425)
Q Consensus 65 ~~~~~~~~~--~~I~G~sl~~~~~n~~~rHP~~~~plIdy~lalll~P~~llG~~iGv~l-n~~~--------P~~~l~i 133 (425)
++|..+-.. ..|+|-|+..++.-+|+ .|+-||=+.++-..|++++|++.-+.- +-++ |....++
T Consensus 23 ~GYn~vntvtyaiilg~Av~~~yk~lk~-----L~i~ide~f~~al~P~vl~Gs~~Ral~D~G~~~~s~l~iTPgIyflv 97 (271)
T COG1967 23 EGYNPVNTVTYAIILGLAVILVYKLLKR-----LKIKIDERFVLALIPFVLLGSSVRALVDAGILPPSYLIITPGIYFLV 97 (271)
T ss_pred CCCCccchHHHHHHHHHHHHHHHHHHhc-----cCCCccHHHHhhcccHhhccchhheeeecCcCCCCCEeeCchHHHHH
Confidence 455554333 89999999999987776 346699999999999999999987654 2223 5555555
Q ss_pred HHHHHHHHHH
Q 014392 134 LLIVLFIGTS 143 (425)
Q Consensus 134 l~~ill~~~s 143 (425)
..+.+....+
T Consensus 98 f~~~~~tll~ 107 (271)
T COG1967 98 FAIALPTLLA 107 (271)
T ss_pred HHHHHHHHHH
Confidence 5544444443
No 29
>PRK10263 DNA translocase FtsK; Provisional
Probab=38.57 E-value=4.3e+02 Score=32.16 Aligned_cols=19 Identities=16% Similarity=-0.075 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhhhccccc
Q 014392 285 YCAFGVLAGIVGGLLGLGG 303 (425)
Q Consensus 285 ~~~~G~~aG~vsGl~GiGG 303 (425)
..+...++.++-++||+++
T Consensus 65 GiVGA~LAD~L~~LFGl~A 83 (1355)
T PRK10263 65 GMPGAWLADTLFFIFGVMA 83 (1355)
T ss_pred chHHHHHHHHHHHHHhHHH
Confidence 3345566777778888543
No 30
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=38.52 E-value=3.7e+02 Score=25.96 Aligned_cols=64 Identities=20% Similarity=0.429 Sum_probs=34.8
Q ss_pred hHHHHH-HHcCCChhHHHHHHHHHHHHHhHHH-HHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014392 306 IMGPLF-LELGVPPQVSSATATFAMTFSSSMS-VVEYYLLKRFPVPYALYFVAVATIAAFVGQHVVRKL 372 (425)
Q Consensus 306 i~vPlL-l~~g~~~~~A~aTs~~~~~~~s~~~-~~~~~~~g~v~~~~~~~l~~~~~iGa~lGa~l~~~l 372 (425)
+..+.+ ..+|.++....+ ..---.++-.+ .+.--. |-.+--.+....+.+++|+.+|..+.+.+
T Consensus 103 ~s~~~la~~lg~~~~i~~S--l~pkSvTtpiAm~vs~~i-GG~~sLta~~vvitGi~Ga~~g~~ll~~~ 168 (226)
T TIGR00659 103 ISGTLLALLLGLGPEIIAS--LLPKSVTTPIAMHVSEMI-GGIPAVTAVFVILTGLLGTVFGPMVLRYF 168 (226)
T ss_pred HHHHHHHHHHCcCHHHHHH--hhhHHhhHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445555 468888765542 21111111111 122222 33344456677788888999998887765
No 31
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.02 E-value=1.5e+02 Score=25.42 Aligned_cols=49 Identities=16% Similarity=0.310 Sum_probs=35.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHc--hHHHHHHHHHHHHHHHHHHHHhh
Q 014392 101 DYDLALLIQPMLMLGISIGVAFNVIF--ADWMVTVLLIVLFIGTSTKAFLK 149 (425)
Q Consensus 101 dy~lalll~P~~llG~~iGv~ln~~~--P~~~l~il~~ill~~~s~k~~~k 149 (425)
-|.+..=+.-.+++|+.+|-++-.++ ..|-+.+++.+=|+.-.....+|
T Consensus 45 a~klssefIsGilVGa~iG~llD~~agTsPwglIv~lllGf~AG~lnv~Rs 95 (116)
T COG5336 45 AFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVLNVLRS 95 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888888999999999998887 45777666665555444444444
No 32
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=38.01 E-value=3e+02 Score=27.06 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=33.3
Q ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHH
Q 014392 344 KRFPVPYALYFVAVATIAAFVGQHVVRKLIILLGRASLIIF 384 (425)
Q Consensus 344 g~v~~~~~~~l~~~~~iGa~lGa~l~~~l~~~~lr~~~~v~ 384 (425)
.++|++...++.+|..+|....+++..++-+++-......|
T Consensus 50 ~~~~~~fL~~l~~G~~~gi~~~s~~i~~ll~~yp~~t~~fF 90 (257)
T PF04018_consen 50 KKINLKFLLPLGIGILIGILLFSKVISYLLENYPIPTYSFF 90 (257)
T ss_pred HhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 47899999999999999999999999888887765544444
No 33
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=36.51 E-value=1.2e+02 Score=25.58 Aligned_cols=20 Identities=15% Similarity=0.086 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHhHH
Q 014392 355 VAVATIAAFVGQHVVRKLII 374 (425)
Q Consensus 355 ~~~~~iGa~lGa~l~~~l~~ 374 (425)
++..++|.++|.++=++++.
T Consensus 53 v~pil~G~~lG~WLD~~~~t 72 (100)
T TIGR02230 53 AIPTLLGVAVGIWLDRHYPS 72 (100)
T ss_pred HHHHHHHHHHHHHHHhhcCC
Confidence 33444555555555444443
No 34
>TIGR00895 2A0115 benzoate transport.
Probab=36.46 E-value=4.1e+02 Score=25.81 Aligned_cols=11 Identities=0% Similarity=-0.224 Sum_probs=4.9
Q ss_pred HHHHHHhHHHH
Q 014392 366 QHVVRKLIILL 376 (425)
Q Consensus 366 a~l~~~l~~~~ 376 (425)
+.+.+..|++.
T Consensus 361 ~~~~~~~~~~~ 371 (398)
T TIGR00895 361 ALMALFYPTAI 371 (398)
T ss_pred HHHhhcCCHHH
Confidence 33444445443
No 35
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport.; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport
Probab=36.26 E-value=6e+02 Score=27.66 Aligned_cols=42 Identities=26% Similarity=0.436 Sum_probs=33.9
Q ss_pred HHHHHHHHhhhccccchh-hHHHHHHHcCCChhHHHHHHHHHH
Q 014392 288 FGVLAGIVGGLLGLGGGF-IMGPLFLELGVPPQVSSATATFAM 329 (425)
Q Consensus 288 ~G~~aG~vsGl~GiGGG~-i~vPlLl~~g~~~~~A~aTs~~~~ 329 (425)
.=.+.+++=|..|.|-.. +..|+|..+|+||-+|+..++...
T Consensus 107 ~~~Fg~flEgaaGFGtpvAI~aplLv~LGf~P~~Aa~l~Li~n 149 (522)
T PF02652_consen 107 AFGFGAFLEGAAGFGTPVAIAAPLLVALGFPPLQAAALCLIGN 149 (522)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHcCCChHHHHHHHHHHc
Confidence 334567889999988885 677888899999999999988753
No 36
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=33.66 E-value=5.3e+02 Score=26.23 Aligned_cols=49 Identities=10% Similarity=0.152 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHchHHHHHHHHHHHHHHHHHHHHhhhh
Q 014392 103 DLALLIQPMLMLGISIGVAF--NVIFADWMVTVLLIVLFIGTSTKAFLKGV 151 (425)
Q Consensus 103 ~lalll~P~~llG~~iGv~l--n~~~P~~~l~il~~ill~~~s~k~~~kg~ 151 (425)
..+++..|..+++..+=.+. +..+-+.++..++.++.....+.+.+++.
T Consensus 201 ~~~li~~Pl~li~la~~GY~yTA~~L~~~l~~sl~l~~~~~l~~~l~~Rwl 251 (340)
T PF12794_consen 201 WPLLILAPLALIVLALLGYYYTALQLLERLILSLYLLLGWLLVYQLILRWL 251 (340)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777666544443 34455666666677777777777777754
No 37
>PRK14766 lipoprotein signal peptidase; Provisional
Probab=33.51 E-value=1.3e+02 Score=28.56 Aligned_cols=31 Identities=10% Similarity=0.176 Sum_probs=21.3
Q ss_pred hhhHHHHHHHHHHHHHHhhhcCC-C--CCCCcccH
Q 014392 71 WPVSMIMGAAVSTVYYNLKLRHP-T--LDMPIIDY 102 (425)
Q Consensus 71 ~~~~~I~G~sl~~~~~n~~~rHP-~--~~~plIdy 102 (425)
++.++|+||++.|++--+++ .| . .....+||
T Consensus 109 l~l~LIlGGAlGNlIDRl~~-~~~~~~~~G~VVDF 142 (201)
T PRK14766 109 IVLSILLAGSWGNLLARLWA-PGNEQNIYGGVVDF 142 (201)
T ss_pred HHHHHHHHHHHHHHHHHhcc-cccccccCceEEEe
Confidence 66689999999999988754 22 1 12346777
No 38
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=33.19 E-value=4.2e+02 Score=24.91 Aligned_cols=30 Identities=23% Similarity=0.214 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHchHHHHHHHHHHHHHH
Q 014392 112 LMLGISIGVAFNVIFADWMVTVLLIVLFIG 141 (425)
Q Consensus 112 ~llG~~iGv~ln~~~P~~~l~il~~ill~~ 141 (425)
+.+|.+.|+.-...=|..++..-++.++..
T Consensus 15 ~~~~lv~G~a~a~~~~~~vl~~gla~~iAg 44 (213)
T PF01988_consen 15 TTFGLVAGVAGAGVSSSVVLLAGLAGLIAG 44 (213)
T ss_pred HHHHHHHHHHHcccChHHHHHHHHHHHHHH
Confidence 556677777766665565555555555443
No 39
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=32.85 E-value=5.1e+02 Score=25.93 Aligned_cols=52 Identities=23% Similarity=0.368 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCcccH-HHHHHHHHHHHHHHHHHHHHHHHchHHHHHHH
Q 014392 76 IMGAAVSTVYYNLKLRHPTLDMPIIDY-DLALLIQPMLMLGISIGVAFNVIFADWMVTVL 134 (425)
Q Consensus 76 I~G~sl~~~~~n~~~rHP~~~~plIdy-~lalll~P~~llG~~iGv~ln~~~P~~~l~il 134 (425)
.++..+.++.|+++.| ++|.+|- -++..+.-..+.|+ +..+.-.+.|++...
T Consensus 121 ~~~~~~~~~~Ys~~lK----~~~~~d~l~va~~~~lr~~~G~---~a~~~~~s~wll~~~ 173 (295)
T PRK12324 121 LLVYLVLNLAYSFKLK----HQPVLDVFCIASGFVLRAIAGG---VAIGVPLSPWLLLCT 173 (295)
T ss_pred HHHHHHHHHHhhHHhc----CCchhhHHHHHHHHHHHHHHHH---HHhCCCccHHHHHHH
Confidence 3566666777887644 3566653 33433444444443 233344677876543
No 40
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=32.83 E-value=65 Score=26.81 Aligned_cols=16 Identities=19% Similarity=0.191 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHhh
Q 014392 16 MIFLNFALAFVCVKAE 31 (425)
Q Consensus 16 ~~~~~~~~~~~~~~~~ 31 (425)
++++++++++.-++|.
T Consensus 11 l~LA~lLlisSevaa~ 26 (95)
T PF07172_consen 11 LLLAALLLISSEVAAR 26 (95)
T ss_pred HHHHHHHHHHhhhhhH
Confidence 3444444444444443
No 41
>COG4280 Predicted membrane protein [Function unknown]
Probab=31.56 E-value=65 Score=30.67 Aligned_cols=47 Identities=19% Similarity=0.206 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014392 104 LALLIQPMLMLGISIGVAFNVIFADWMVTVLLIVLFIGTSTKAFLKGVETWK 155 (425)
Q Consensus 104 lalll~P~~llG~~iGv~ln~~~P~~~l~il~~ill~~~s~k~~~kg~~~~k 155 (425)
+++++.|.+.+|..+ ...|--.+.+.-.++|++-++|-.+|+++..+
T Consensus 44 lalvl~l~lvlGk~L-----~lvPln~lqiv~gvLLllFG~rw~Rsavrr~a 90 (236)
T COG4280 44 LALVLILTLVLGKLL-----YLVPLNYLQIVSGVLLLLFGYRWIRSAVRRFA 90 (236)
T ss_pred HHHHHHHHHHHccce-----eeeechHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666666543 46788889999999999999999999887665
No 42
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=30.35 E-value=2e+02 Score=27.15 Aligned_cols=20 Identities=15% Similarity=0.235 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 014392 353 YFVAVATIAAFVGQHVVRKL 372 (425)
Q Consensus 353 ~l~~~~~iGa~lGa~l~~~l 372 (425)
..++.-++.+++++++..+.
T Consensus 72 LiIvFllLTaPVaSHaIARA 91 (197)
T PRK12585 72 LAVLFIFLTTPVASHLINRA 91 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444567777777776554
No 43
>PRK01844 hypothetical protein; Provisional
Probab=29.45 E-value=1.4e+02 Score=23.77 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhH
Q 014392 352 LYFVAVATIAAFVGQHVVRKLIILLGR 378 (425)
Q Consensus 352 ~~l~~~~~iGa~lGa~l~~~l~~~~lr 378 (425)
+..+++.++|...|-.++++.-+++++
T Consensus 8 ~l~I~~li~G~~~Gff~ark~~~k~lk 34 (72)
T PRK01844 8 LVGVVALVAGVALGFFIARKYMMNYLQ 34 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566777777777777777665
No 44
>COG3366 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.96 E-value=6.6e+02 Score=25.55 Aligned_cols=70 Identities=17% Similarity=0.180 Sum_probs=45.9
Q ss_pred hhhHHHHHHHcCCChhHHHHHHHHHHHHHhHHHHH-HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 014392 304 GFIMGPLFLELGVPPQVSSATATFAMTFSSSMSVV-EYYLLKRFPVPYALYFVAVATIAAFVGQHVVRKLI 373 (425)
Q Consensus 304 G~i~vPlLl~~g~~~~~A~aTs~~~~~~~s~~~~~-~~~~~g~v~~~~~~~l~~~~~iGa~lGa~l~~~l~ 373 (425)
+.++-|.+...++|+..+++...+..-+++..+.+ +|++.|.+|-+...........=+.++..+..++|
T Consensus 40 ~~~~~~i~~~~~l~~~c~sa~~~~f~sptag~smL~~~~keg~l~eREvi~~slln~FP~~v~~~~~f~~P 110 (311)
T COG3366 40 SKLTKPILRYLNLPEECGSAFATFFVSPTAGNSMLSEFYKEGKLNEREVIVASLLNAFPTGVRHAFTFYAP 110 (311)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHhChhhhHHHHHHHHHcCCCcHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45667888888999998888776666555555544 67888889888776655554444444443333333
No 45
>PRK10814 outer membrane-specific lipoprotein transporter subunit LolC; Provisional
Probab=27.41 E-value=3.8e+02 Score=27.31 Aligned_cols=25 Identities=36% Similarity=0.549 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhhccccchhhHHHHH
Q 014392 287 AFGVLAGIVGGLLGLGGGFIMGPLF 311 (425)
Q Consensus 287 ~~G~~aG~vsGl~GiGGG~i~vPlL 311 (425)
.=+++.|++++++|+.-|..+...+
T Consensus 316 ~E~~~~~~~G~~~G~~lg~~l~~~l 340 (399)
T PRK10814 316 VQGASAGIIGALLGALLGALLASQL 340 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467778888888877776554443
No 46
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=26.54 E-value=7.8e+02 Score=25.95 Aligned_cols=64 Identities=19% Similarity=0.285 Sum_probs=38.9
Q ss_pred hhhcCCCCCCCcccHHHHHHHHHHHHHHHHHH-----HHHHHHchHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 014392 88 LKLRHPTLDMPIIDYDLALLIQPMLMLGISIG-----VAFNVIFADWMVTVLLIVLFIGTSTKAFLKGVETWKRETI 159 (425)
Q Consensus 88 ~~~rHP~~~~plIdy~lalll~P~~llG~~iG-----v~ln~~~P~~~l~il~~ill~~~s~k~~~kg~~~~kkE~~ 159 (425)
+..+-|.++||- .+-++--|+++|.+++ .+|..+-|+.++.+...+-++..... -+-.||.|.+
T Consensus 114 l~D~~~e~~R~~----~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~~~l~----~ia~wg~E~r 182 (403)
T PF03209_consen 114 LADLAPEERRPR----VVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIALLLN----LIALWGQEPR 182 (403)
T ss_pred HHhcCCHhhhhh----hHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHH----HHHHHhcccC
Confidence 366777777774 3445555555555554 45555567777777777666544433 3368888854
No 47
>COG4060 MtrD Tetrahydromethanopterin S-methyltransferase, subunit D [Coenzyme metabolism]
Probab=26.41 E-value=1.8e+02 Score=27.08 Aligned_cols=45 Identities=27% Similarity=0.393 Sum_probs=26.5
Q ss_pred HHHHHHHHHhhhccccchhhHHHHHHHcCCChhHHHHHHHHHHHH
Q 014392 287 AFGVLAGIVGGLLGLGGGFIMGPLFLELGVPPQVSSATATFAMTF 331 (425)
Q Consensus 287 ~~G~~aG~vsGl~GiGGG~i~vPlLl~~g~~~~~A~aTs~~~~~~ 331 (425)
-..|+.|+++|++|-=||.+..-.|...+.+....+|--..+.+|
T Consensus 135 TV~FVSGiiGg~LGGiGGalvY~aL~~~~~t~~~gvA~m~AvG~F 179 (230)
T COG4060 135 TVSFVSGIIGGLLGGIGGALVYYALYKVGLTMSAGVAGMLAVGFF 179 (230)
T ss_pred eeeeehhhhhhhhcCccchhhHHHHHHHhcccchHHHHHHHHHHH
Confidence 456778888888764444444445556666655555544444433
No 48
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=26.23 E-value=5.5e+02 Score=24.13 Aligned_cols=60 Identities=17% Similarity=0.245 Sum_probs=31.0
Q ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcc
Q 014392 345 RFPVPYALYFVAVATIAAFVGQHVVRKLIILLGRASLIIFILAFMIFVSAISLGGVGISNMIGKFHRH 412 (425)
Q Consensus 345 ~v~~~~~~~l~~~~~iGa~lGa~l~~~l~~~~lr~~~~v~ll~~~i~~sai~l~~~Gi~~~i~~~~~~ 412 (425)
++++...+.+.+...+...+|-.+.+.+.+...+. +.-+ ++++.|.++|+.++++.+++.
T Consensus 27 ~~~~~~~l~ig~~~~~~~~lg~~~G~~~~~~i~~~-~~~~-------ig~~iLi~iG~~mi~~~~~~~ 86 (206)
T TIGR02840 27 KIPFLSNLIIAVISGLFIFISMLLGKFLAKFLPPK-VTEI-------LGAFILIAIGIWIIYNAFRPK 86 (206)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh-hHHH-------HHHHHHHHHHHHHHHHHHhhh
Confidence 45677777666666555555555444443322111 1111 222345666777777776543
No 49
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=25.89 E-value=3e+02 Score=21.87 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHH
Q 014392 102 YDLALLIQPMLMLGISIGVAFNVIFADWMVTVLLIVLFIG 141 (425)
Q Consensus 102 y~lalll~P~~llG~~iGv~ln~~~P~~~l~il~~ill~~ 141 (425)
.-..+=+..+..++..+|..+...+|...+..+-.++++.
T Consensus 37 ~G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~lFl~ 76 (78)
T PF01169_consen 37 AGATLALALATGLAVLLGSWLASRIPERYIKWVAGALFLL 76 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 3344445567888999999999999999998877777654
No 50
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=25.88 E-value=5.4e+02 Score=23.86 Aligned_cols=31 Identities=16% Similarity=0.268 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 014392 347 PVPYALYFVAVATIAAFVGQHVVRKLIILLG 377 (425)
Q Consensus 347 ~~~~~~~l~~~~~iGa~lGa~l~~~l~~~~l 377 (425)
+......+.+.+++++.+|+.+.+++-+|..
T Consensus 157 ~~~~~~~~~~~t~v~~~iG~~iG~kllkKHF 187 (189)
T TIGR02185 157 SAIWAVIMIVLTAVAGIAGVLIGKKLLKKHF 187 (189)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444556666777777777777777766553
No 51
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=25.24 E-value=4.2e+02 Score=27.51 Aligned_cols=78 Identities=26% Similarity=0.453 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHh-hhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHhh---
Q 014392 74 SMIMGAAVSTVYYNL-KLRHPTLDMPIIDYDLALLIQPMLMLGISIGVAFNVIFADWMVTVLLIVLFIGTSTKAFLK--- 149 (425)
Q Consensus 74 ~~I~G~sl~~~~~n~-~~rHP~~~~plIdy~lalll~P~~llG~~iGv~ln~~~P~~~l~il~~ill~~~s~k~~~k--- 149 (425)
..|++.+...-+|.. .++|-....|.+-+...-++....-+|..+||.++. +. |+++-.|...+
T Consensus 152 tiI~~~~~~~~Iy~~W~~~~g~~hlp~v~ft~~~li~~vfslgla~gv~la~-------t~-----Lf~~qlk~Il~nrt 219 (414)
T KOG1314|consen 152 TIILVCAQYRGIYFRWYIKYGLRHLPIVFFTLSSLIALVFSLGLAIGVVLAL-------TM-----LFFIQLKQILNNRT 219 (414)
T ss_pred eeeehhHHHHHHHHHHHhhcccccCceeeccHHHHHHHHHHhHHHHHHHHHH-------HH-----HHHHHHHHHHcCCc
Confidence 344555555555544 567777778999999999999888899999988773 22 33344444444
Q ss_pred hhhhhhHHHHHHHH
Q 014392 150 GVETWKRETILKKE 163 (425)
Q Consensus 150 g~~~~kkE~~~~~~ 163 (425)
+++.|-.|+...|.
T Consensus 220 ~IE~wi~~Ka~~rr 233 (414)
T KOG1314|consen 220 GIESWIVEKAMDRR 233 (414)
T ss_pred chHHHHHHHHHHHH
Confidence 67788766555443
No 52
>TIGR01191 ccmC heme exporter protein CcmC. This model describes the cyt c biogenesis protein encoded by ccmC in bacteria. It must be noted an arabidopsis, a tritcum and a piscum plant proteins were recognizable in the clade. Quite likely they are of organellar origin. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes, ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in the heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=25.04 E-value=4.1e+02 Score=24.77 Aligned_cols=74 Identities=15% Similarity=0.225 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHc------hHHHHHHHHHHHHHHHHHHHHh
Q 014392 75 MIMGAAVSTVYYNLKLRHPTLDMPIIDYDLALLIQPMLMLGISIGVAFNVIF------ADWMVTVLLIVLFIGTSTKAFL 148 (425)
Q Consensus 75 ~I~G~sl~~~~~n~~~rHP~~~~plIdy~lalll~P~~llG~~iGv~ln~~~------P~~~l~il~~ill~~~s~k~~~ 148 (425)
.-..++++++.+..+ |++..| .+++..+.+=.|...+|..-|++=+.-- =|-=++..+++.+++.++-.++
T Consensus 26 ~~~~~~~~s~~yL~~-~~~~~D--~la~~~a~iGf~f~tl~LitGaiWak~~WG~~W~WDpr~t~~lIlwliY~~yl~lr 102 (184)
T TIGR01191 26 VYIMMAIASFIFLVW-KHPLSD--LAAKAAAPIGAVFTLIALVTGSLWGKPMWGTWWVWDARLTSVLILFLLYLGYLALW 102 (184)
T ss_pred HHHHHHHHHHHHHHH-cChhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 334445555555544 555444 4677777677777888888887776532 1334677888888899888777
Q ss_pred hhh
Q 014392 149 KGV 151 (425)
Q Consensus 149 kg~ 151 (425)
++.
T Consensus 103 ~~~ 105 (184)
T TIGR01191 103 EAI 105 (184)
T ss_pred Hhc
Confidence 654
No 53
>TIGR03434 ADOP Acidobacterial duplicated orphan permease. Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.
Probab=24.88 E-value=1e+03 Score=26.68 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhhccccchhhHHHHH
Q 014392 287 AFGVLAGIVGGLLGLGGGFIMGPLF 311 (425)
Q Consensus 287 ~~G~~aG~vsGl~GiGGG~i~vPlL 311 (425)
.=+++.|++++++|+.-|.+..+.+
T Consensus 323 ~E~~~l~~~~~~lg~~l~~~~~~~~ 347 (803)
T TIGR03434 323 TESLLLALAGGALGLLLAYWGLRLL 347 (803)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777788888877777777776
No 54
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=24.59 E-value=6.9e+02 Score=24.67 Aligned_cols=41 Identities=10% Similarity=-0.117 Sum_probs=29.0
Q ss_pred ccccchhhHHHHHHHcCCChhHHHHHHHHHHHHHhHHHHHH
Q 014392 299 LGLGGGFIMGPLFLELGVPPQVSSATATFAMTFSSSMSVVE 339 (425)
Q Consensus 299 ~GiGGG~i~vPlLl~~g~~~~~A~aTs~~~~~~~s~~~~~~ 339 (425)
=|+.-.-..+-..+..|++.+.|.--|-.+..+.-..+...
T Consensus 164 PGiSRSG~TI~~~l~~G~~r~~Aa~fSFLlsiPai~gA~~l 204 (268)
T PRK00281 164 PGTSRSGATISGGLLLGLSREAAAEFSFLLAIPAMLGASLL 204 (268)
T ss_pred CCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455789999999999998888877766653
No 55
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=24.56 E-value=73 Score=22.86 Aligned_cols=27 Identities=15% Similarity=0.498 Sum_probs=18.1
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHhccc
Q 014392 239 WVLDLLQIPVSLVVSLYEAISLYKGRR 265 (425)
Q Consensus 239 w~l~~l~~pv~~~v~~~~~~~l~~~~~ 265 (425)
|+-+.+.+.+.++++.|.+..+|++-+
T Consensus 4 wlt~iFsvvIil~If~~iGl~IyQkik 30 (49)
T PF11044_consen 4 WLTTIFSVVIILGIFAWIGLSIYQKIK 30 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666677777777777775533
No 56
>PRK10420 L-lactate permease; Provisional
Probab=24.35 E-value=8.1e+02 Score=26.90 Aligned_cols=44 Identities=20% Similarity=0.314 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhhccccchh-hHHHHHHHcCCChhHHHHHHHHHHH
Q 014392 287 AFGVLAGIVGGLLGLGGGF-IMGPLFLELGVPPQVSSATATFAMT 330 (425)
Q Consensus 287 ~~G~~aG~vsGl~GiGGG~-i~vPlLl~~g~~~~~A~aTs~~~~~ 330 (425)
+.=.+.+|+=|..|.|-.. +..|+|..+|++|-.|+..++....
T Consensus 121 I~~~Fg~FlEg~AGFGtpvAI~aplLv~LGF~Pl~Aa~i~Li~ns 165 (551)
T PRK10420 121 VGFCFGAFLEGAAGFGAPVAITAALLVGLGFKPLYAAGLCLIVNT 165 (551)
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHcCCChHHHHHHHHHHcC
Confidence 3445678899998988765 5566778999999999998887665
No 57
>PRK09695 glycolate transporter; Provisional
Probab=23.97 E-value=7.8e+02 Score=27.06 Aligned_cols=44 Identities=25% Similarity=0.377 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhhccccchh-hHHHHHHHcCCChhHHHHHHHHHHH
Q 014392 287 AFGVLAGIVGGLLGLGGGF-IMGPLFLELGVPPQVSSATATFAMT 330 (425)
Q Consensus 287 ~~G~~aG~vsGl~GiGGG~-i~vPlLl~~g~~~~~A~aTs~~~~~ 330 (425)
+.=.+.+|+=|..|.|-.. +..|+|..+|+||-.|+..++....
T Consensus 121 I~~~Fg~FlEg~aGFGtPvAI~aplLv~LGF~Pl~Aa~i~Li~ns 165 (560)
T PRK09695 121 IGFSFGALLEGAAGFGAPVAITGALLVGLGFKPLYAAGLCLIANT 165 (560)
T ss_pred HHHHHHHHHHHhhcCCCcHHHHHHHHHHcCCChHHHHHHHHHHcC
Confidence 3445678999999988875 5566778999999999988887654
No 58
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=23.79 E-value=5.6e+02 Score=23.34 Aligned_cols=44 Identities=9% Similarity=0.000 Sum_probs=28.2
Q ss_pred hHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 014392 333 SSMSVVEYYLLKRFPVPYALYFVAVATIAAFVGQHVVRKLIILL 376 (425)
Q Consensus 333 s~~~~~~~~~~g~v~~~~~~~l~~~~~iGa~lGa~l~~~l~~~~ 376 (425)
+..+.+.|.+.++..+....-....+++|+.++.-++..+-.+-
T Consensus 79 a~laGliyrk~~~~~~a~~ge~igt~iig~~~s~pi~~~~~g~~ 122 (160)
T TIGR02359 79 ALLAGLLYRFGRKHYWASLGEILGTGIIGSLLAYPVAAWLLGSS 122 (160)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 33444556555554455666677778888888888777665543
No 59
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=23.36 E-value=6.6e+02 Score=25.91 Aligned_cols=16 Identities=50% Similarity=0.922 Sum_probs=9.3
Q ss_pred hhhccccchhhHHHHH
Q 014392 296 GGLLGLGGGFIMGPLF 311 (425)
Q Consensus 296 sGl~GiGGG~i~vPlL 311 (425)
++.-|..||.+..-++
T Consensus 211 ~~~g~l~gglIlgvl~ 226 (349)
T COG3949 211 SGIGGLIGGLILGVLL 226 (349)
T ss_pred hhhhhhhhhHHHHHHH
Confidence 3445556676666555
No 60
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=23.32 E-value=2.3e+02 Score=30.40 Aligned_cols=12 Identities=42% Similarity=0.636 Sum_probs=9.3
Q ss_pred HhhhcCCCCCCC
Q 014392 87 NLKLRHPTLDMP 98 (425)
Q Consensus 87 n~~~rHP~~~~p 98 (425)
.+|+|+|+.+||
T Consensus 384 ~lr~k~p~~~rp 395 (507)
T TIGR00910 384 VLILKHPDLKRT 395 (507)
T ss_pred HHHHhcCCCCCC
Confidence 457889988876
No 61
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=22.61 E-value=2.3e+02 Score=30.10 Aligned_cols=12 Identities=25% Similarity=0.689 Sum_probs=9.9
Q ss_pred HhhhcCCCCCCC
Q 014392 87 NLKLRHPTLDMP 98 (425)
Q Consensus 87 n~~~rHP~~~~p 98 (425)
.+|+|||+.+||
T Consensus 411 ~lR~~~p~~~rp 422 (501)
T TIGR00911 411 WLRYKRPEMNRP 422 (501)
T ss_pred heeccCCCCCCC
Confidence 458899999887
No 62
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=22.60 E-value=7.4e+02 Score=24.29 Aligned_cols=71 Identities=17% Similarity=0.147 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHhhh-----cCCCC---CCCcccHHHHHHHHHHHHHHHHHHHHHHHHchHHHH--HHHHHHHHHHHH
Q 014392 74 SMIMGAAVSTVYYNLKL-----RHPTL---DMPIIDYDLALLIQPMLMLGISIGVAFNVIFADWMV--TVLLIVLFIGTS 143 (425)
Q Consensus 74 ~~I~G~sl~~~~~n~~~-----rHP~~---~~plIdy~lalll~P~~llG~~iGv~ln~~~P~~~l--~il~~ill~~~s 143 (425)
.+=+|+.++-.++.-++ ++... ++..=|+++...+.-.++.-.++|..+...+.+... .....+.++.++
T Consensus 43 ~lhlGtllAvl~~fr~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiatip~~v~G~~~~~~i~~~~~~~~~~v~~~Li~~g 122 (259)
T PF02673_consen 43 FLHLGTLLAVLIYFRKDIWRLLKGFFRGLRGRSNPDRRLLLLIIIATIPTGVVGLLFKDFIEALFFSSPLVVAIALIITG 122 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Confidence 45556666655554432 11111 123446777777777777777788777777766652 233444445554
Q ss_pred H
Q 014392 144 T 144 (425)
Q Consensus 144 ~ 144 (425)
.
T Consensus 123 ~ 123 (259)
T PF02673_consen 123 L 123 (259)
T ss_pred H
Confidence 3
No 63
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=22.39 E-value=1.1e+03 Score=26.04 Aligned_cols=85 Identities=16% Similarity=0.096 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhhhccc--cchhhHHHHHH----HcCCChhHHHHHHHHHHHHHhHHHHHHHHHcCC----cCHHHHHHH
Q 014392 285 YCAFGVLAGIVGGLLGL--GGGFIMGPLFL----ELGVPPQVSSATATFAMTFSSSMSVVEYYLLKR----FPVPYALYF 354 (425)
Q Consensus 285 ~~~~G~~aG~vsGl~Gi--GGG~i~vPlLl----~~g~~~~~A~aTs~~~~~~~s~~~~~~~~~~g~----v~~~~~~~l 354 (425)
..+..+..|.+.|..|+ ..|+-.+-.|+ .-|-+.......+......+......+-+|.|+ -+......-
T Consensus 395 a~v~~~~~~~~~g~t~~~P~~~~~~~sqli~g~~~pg~~~a~l~~~~~~~~~~~qa~~~~~DlK~G~~l~~~Pr~~f~~Q 474 (624)
T PF03169_consen 395 AFVFSIPSGRITGETGINPVSGLNILSQLIFGLLLPGNPIANLLFGGYGYAAASQAGDLMQDLKTGHYLGIPPRAQFYAQ 474 (624)
T ss_pred HHHHHHHHHHHhhhcCCCcchhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHH
Confidence 33445566666677776 55543333221 122222222222222333333333333344442 234444455
Q ss_pred HHHHHHHHHHHHHHH
Q 014392 355 VAVATIAAFVGQHVV 369 (425)
Q Consensus 355 ~~~~~iGa~lGa~l~ 369 (425)
.+++++|+++-.-+.
T Consensus 475 ~iG~~ig~~v~~~v~ 489 (624)
T PF03169_consen 475 IIGTIIGAFVAVAVM 489 (624)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555544433
No 64
>PF05052 MerE: MerE protein; InterPro: IPR007746 The prokaryotic MerE (or URF-1) protein is part of the mercury resistance operon often located on plasmids or transposons [, ]. It has been suggested that MerE is a broad mercury transporter mediating transport across the bacterial membrane [].
Probab=22.33 E-value=2.8e+02 Score=22.04 Aligned_cols=31 Identities=16% Similarity=0.351 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHH
Q 014392 112 LMLGISIGVAFNVIFADWMVTVLLIVLFIGTSTK 145 (425)
Q Consensus 112 ~llG~~iGv~ln~~~P~~~l~il~~ill~~~s~k 145 (425)
++.|+..|+++... |.+..+....+.+.+..
T Consensus 38 vLaGTaaGafl~e~---w~iaal~l~~LF~lsl~ 68 (75)
T PF05052_consen 38 VLAGTAAGAFLGEH---WVIAALTLTGLFVLSLT 68 (75)
T ss_pred HHccchHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 78899999988874 76666555555555443
No 65
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=22.10 E-value=5.2e+02 Score=22.40 Aligned_cols=41 Identities=17% Similarity=0.325 Sum_probs=35.7
Q ss_pred hhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHchHH
Q 014392 89 KLRHPTLDMPIIDYDLALLIQPMLMLGISIGVAFNVIFADW 129 (425)
Q Consensus 89 ~~rHP~~~~plIdy~lalll~P~~llG~~iGv~ln~~~P~~ 129 (425)
-.+||-.=|++-.=++.+...-...+|..+|..+..++..|
T Consensus 11 LN~ePvV~rGlT~~El~~~a~~~~~~g~~~gl~la~~~g~~ 51 (121)
T PF11990_consen 11 LNREPVVFRGLTADELGLAAGVGFVAGLVVGLPLALLTGWW 51 (121)
T ss_pred hcCCCCeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888899999999999999999999999998887766
No 66
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=21.91 E-value=7.8e+02 Score=24.33 Aligned_cols=37 Identities=16% Similarity=0.129 Sum_probs=21.1
Q ss_pred Hhhhccccchh---------hHHHHHHHcCCChhHHHHHHHHHHHH
Q 014392 295 VGGLLGLGGGF---------IMGPLFLELGVPPQVSSATATFAMTF 331 (425)
Q Consensus 295 vsGl~GiGGG~---------i~vPlLl~~g~~~~~A~aTs~~~~~~ 331 (425)
.-|...+||.. +-+|+-...|.++..|+|.+.-..+.
T Consensus 61 ~lG~~~~Gga~ppD~~~a~iigta~aI~~g~~~e~AialAvPvgll 106 (267)
T PRK09757 61 FAGLTPAGGVQPPNPIMAGLMTTVIAWSTGVDAKTAIGLGLPFSLL 106 (267)
T ss_pred HHhCccccccCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 34555666543 33344455788888887766544433
No 67
>TIGR02212 lolCE lipoprotein releasing system, transmembrane protein, LolC/E family. This model describes the LolC protein, and its paralog LolE found in some species. These proteins are homologous to permease proteins of ABC transporters. In some species, two paralogs occur, designated LolC and LolE. In others, a single form is found and tends to be designated LolC.
Probab=21.48 E-value=6.9e+02 Score=25.21 Aligned_cols=22 Identities=36% Similarity=0.687 Sum_probs=13.6
Q ss_pred HHHHHHHHhhhccccchhhHHH
Q 014392 288 FGVLAGIVGGLLGLGGGFIMGP 309 (425)
Q Consensus 288 ~G~~aG~vsGl~GiGGG~i~vP 309 (425)
=+++.|+++++.|+..|..+.-
T Consensus 319 E~~~l~l~g~~~G~~lg~~~~~ 340 (411)
T TIGR02212 319 QGLLIGVIGTLLGVILGVLLAL 340 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777666654443
No 68
>PRK00523 hypothetical protein; Provisional
Probab=21.47 E-value=2.3e+02 Score=22.52 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhH
Q 014392 353 YFVAVATIAAFVGQHVVRKLIILLGR 378 (425)
Q Consensus 353 ~l~~~~~iGa~lGa~l~~~l~~~~lr 378 (425)
..+++.++|...|-.++++.-+++++
T Consensus 10 l~i~~li~G~~~Gffiark~~~k~l~ 35 (72)
T PRK00523 10 LGIPLLIVGGIIGYFVSKKMFKKQIR 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666777777666665
No 69
>PRK12600 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=21.38 E-value=4.7e+02 Score=21.62 Aligned_cols=52 Identities=10% Similarity=0.060 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHH
Q 014392 318 PQVSSATATFAMTFSSSMSVVEYYLLKRFPVPYALYFVAVATIAAFVGQHVV 369 (425)
Q Consensus 318 ~~~A~aTs~~~~~~~s~~~~~~~~~~g~v~~~~~~~l~~~~~iGa~lGa~l~ 369 (425)
+...+|...+.....+....+........-.+.++.+.+.+++|+..-++..
T Consensus 31 ~DRvvAlD~l~~~~v~~i~l~~~~~~~~~~ldvalvlAll~Fv~tva~Aryl 82 (94)
T PRK12600 31 ADRVVALDAIGINLIAIIALFSILLDTKAYLEVILLIGILAFIGTAAFSKFI 82 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888887777666667777888888887776655543
No 70
>COG2119 Predicted membrane protein [Function unknown]
Probab=20.68 E-value=4.8e+02 Score=24.58 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=42.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHhh
Q 014392 100 IDYDLALLIQPMLMLGISIGVAFNVIFADWMVTVLLIVLFIGTSTKAFLK 149 (425)
Q Consensus 100 Idy~lalll~P~~llG~~iGv~ln~~~P~~~l~il~~ill~~~s~k~~~k 149 (425)
|=--++.-..-|..++..+|......+|+..+.....+.++..+.+++..
T Consensus 36 v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~l~e 85 (190)
T COG2119 36 VFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWMLIE 85 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhcc
Confidence 44566666777889999999999999999999999999999999887753
No 71
>PRK10711 hypothetical protein; Provisional
Probab=20.14 E-value=8e+02 Score=23.78 Aligned_cols=30 Identities=17% Similarity=0.305 Sum_probs=21.6
Q ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 014392 344 KRFPVPYALYFVAVATIAAFVGQHVVRKLI 373 (425)
Q Consensus 344 g~v~~~~~~~l~~~~~iGa~lGa~l~~~l~ 373 (425)
|-++--.+....+.+++|+.+|..+.+.+.
T Consensus 141 GG~~sLta~~ViitGi~Ga~~g~~llk~~r 170 (231)
T PRK10711 141 GGIPAISAVCVIFVGILGAVFGHTLLNAMR 170 (231)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 334445566777888899999988887663
No 72
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=20.11 E-value=7.8e+02 Score=23.61 Aligned_cols=25 Identities=28% Similarity=0.164 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Q 014392 102 YDLALLIQPMLMLGISIGVAFNVIF 126 (425)
Q Consensus 102 y~lalll~P~~llG~~iGv~ln~~~ 126 (425)
++..+++.-..++|..+|......-
T Consensus 9 ~~~~~~illg~~iGg~~G~~~~~~~ 33 (248)
T PF11368_consen 9 LRFLLLILLGGLIGGFIGFFIGRIG 33 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666777777777655444
No 73
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=20.09 E-value=8.7e+02 Score=24.16 Aligned_cols=74 Identities=12% Similarity=0.106 Sum_probs=39.4
Q ss_pred HHHcCCChhHHHHHHHHHHHHHhHHHHH-HHHHcCC----cCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHH
Q 014392 311 FLELGVPPQVSSATATFAMTFSSSMSVV-EYYLLKR----FPVPYALYFVAVATIAAFVGQHVVRKLIILLGRASLIIF 384 (425)
Q Consensus 311 Ll~~g~~~~~A~aTs~~~~~~~s~~~~~-~~~~~g~----v~~~~~~~l~~~~~iGa~lGa~l~~~l~~~~lr~~~~v~ 384 (425)
.+.+|++.++|.==|-+...++...+.. ...+.+. .|+.....-.+.+++-+++.-+...++.++..-..|..+
T Consensus 177 ~lllG~~r~~AaefSFlLaIP~m~GA~~l~l~k~~~~~~~~~~~~l~vg~i~AFvv~~~~I~~ll~~i~~~~~~~F~~Y 255 (270)
T COG1968 177 GLLLGLSREAAAEFSFLLAIPAMFGASALDLFKSGDALSAADLPILLVGFIVAFVVSLIAIKFLLRFIKRHSFIPFAIY 255 (270)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeehHHH
Confidence 3457999998888888888887766554 3444432 233333333334444444444433333333333344444
Done!