Query 014392
Match_columns 425
No_of_seqs 366 out of 1703
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 10:45:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014392.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014392hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 29.1 2.2E+02 0.0076 28.1 9.7 12 87-98 391-402 (511)
2 3iyz_A Aquaporin-4; water tran 14.7 5.7E+02 0.02 24.8 8.7 33 340-372 121-153 (340)
3 3llq_A Aquaporin Z 2; aquapori 14.5 7.1E+02 0.024 23.0 10.2 36 337-372 95-130 (256)
4 2o9g_A Aquaporin Z; integral m 11.4 3.4E+02 0.011 24.7 5.7 34 339-372 72-105 (234)
5 1j4n_A Aquaporin 1; membrane p 10.9 3.4E+02 0.012 25.3 5.7 34 339-372 84-117 (271)
6 2w2e_A AQY1, aquaporin, aquapo 10.9 3.8E+02 0.013 25.1 6.0 34 339-372 118-151 (279)
7 3gd8_A Aquaporin-4; proton exc 10.7 4.2E+02 0.014 23.9 6.0 33 340-372 73-105 (223)
8 3d9s_A Aquaporin-5, AQP-5; aqu 10.6 4E+02 0.014 24.8 6.0 34 339-372 76-109 (266)
9 3few_X Colicin S4; cell lysis, 10.2 1.9E+02 0.0064 29.1 3.5 22 355-376 473-494 (505)
10 3cn5_A Aquaporin; membrane pro 10.0 4.2E+02 0.014 25.2 6.0 34 339-372 130-163 (304)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=29.08 E-value=2.2e+02 Score=28.13 Aligned_cols=12 Identities=42% Similarity=0.647 Sum_probs=8.3
Q ss_pred HhhhcCCCCCCC
Q 014392 87 NLKLRHPTLDMP 98 (425)
Q Consensus 87 n~~~rHP~~~~p 98 (425)
.+|+|+|+.+||
T Consensus 391 ~~r~~~~~~~~~ 402 (511)
T 4djk_A 391 VLVLKHPDLKRT 402 (511)
T ss_dssp HHHHHCCSCCCS
T ss_pred HHHHhCCCCCCC
Confidence 447788877666
No 2
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=14.70 E-value=5.7e+02 Score=24.81 Aligned_cols=33 Identities=6% Similarity=0.383 Sum_probs=26.6
Q ss_pred HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014392 340 YYLLKRFPVPYALYFVAVATIAAFVGQHVVRKL 372 (425)
Q Consensus 340 ~~~~g~v~~~~~~~l~~~~~iGa~lGa~l~~~l 372 (425)
.+..|+++|..+...++.=++|+++|+.++..+
T Consensus 121 l~l~G~~~~~~~~~YiiAQ~lGA~~GA~lv~~~ 153 (340)
T 3iyz_A 121 MVCTRKISIAKSVFYITAQCLGAIIGAGILYLV 153 (340)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345588999999999888899999998877654
No 3
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=14.55 E-value=7.1e+02 Score=22.97 Aligned_cols=36 Identities=19% Similarity=0.274 Sum_probs=31.0
Q ss_pred HHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014392 337 VVEYYLLKRFPVPYALYFVAVATIAAFVGQHVVRKL 372 (425)
Q Consensus 337 ~~~~~~~g~v~~~~~~~l~~~~~iGa~lGa~l~~~l 372 (425)
++.....|+++|..+....+.=++|+++|+.+++.+
T Consensus 95 Tla~~~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~ 130 (256)
T 3llq_A 95 SVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVI 130 (256)
T ss_dssp HHHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677799999999999999999999999887754
No 4
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=11.37 E-value=3.4e+02 Score=24.70 Aligned_cols=34 Identities=15% Similarity=0.283 Sum_probs=28.8
Q ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014392 339 EYYLLKRFPVPYALYFVAVATIAAFVGQHVVRKL 372 (425)
Q Consensus 339 ~~~~~g~v~~~~~~~l~~~~~iGa~lGa~l~~~l 372 (425)
.....|+++|..+....+.=++|+++|+.+.+.+
T Consensus 72 a~~~~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~ 105 (234)
T 2o9g_A 72 GLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLI 105 (234)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456789999999999999999999999887654
No 5
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=10.93 E-value=3.4e+02 Score=25.29 Aligned_cols=34 Identities=15% Similarity=0.284 Sum_probs=29.1
Q ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014392 339 EYYLLKRFPVPYALYFVAVATIAAFVGQHVVRKL 372 (425)
Q Consensus 339 ~~~~~g~v~~~~~~~l~~~~~iGa~lGa~l~~~l 372 (425)
.....|+++|..+....+.=++|+++|+.+++.+
T Consensus 84 a~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~ 117 (271)
T 1j4n_A 84 GLLLSCQISVLRAIMYIIAQCVGAIVATAILSGI 117 (271)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456689999999999999999999999888755
No 6
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=10.90 E-value=3.8e+02 Score=25.14 Aligned_cols=34 Identities=9% Similarity=0.158 Sum_probs=28.2
Q ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014392 339 EYYLLKRFPVPYALYFVAVATIAAFVGQHVVRKL 372 (425)
Q Consensus 339 ~~~~~g~v~~~~~~~l~~~~~iGa~lGa~l~~~l 372 (425)
.....|+++|..+....+.=++|+++|+.+++.+
T Consensus 118 a~~~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~ 151 (279)
T 2w2e_A 118 ALVLARAIPPFRGILMAFTQIVAGMAAAGAASAM 151 (279)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456689999999999999999999999887754
No 7
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=10.67 E-value=4.2e+02 Score=23.88 Aligned_cols=33 Identities=9% Similarity=0.401 Sum_probs=28.1
Q ss_pred HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014392 340 YYLLKRFPVPYALYFVAVATIAAFVGQHVVRKL 372 (425)
Q Consensus 340 ~~~~g~v~~~~~~~l~~~~~iGa~lGa~l~~~l 372 (425)
....|+++|.......+.=++|+++|+.+++.+
T Consensus 73 ~~~~g~~~~~~~~~Yi~AQ~lGA~~ga~lv~~~ 105 (223)
T 3gd8_A 73 MVCTRKISIAKSVFYIAAQCLGAIIGAGILYLV 105 (223)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345689999999999999999999999887654
No 8
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=10.64 E-value=4e+02 Score=24.77 Aligned_cols=34 Identities=15% Similarity=0.332 Sum_probs=28.9
Q ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014392 339 EYYLLKRFPVPYALYFVAVATIAAFVGQHVVRKL 372 (425)
Q Consensus 339 ~~~~~g~v~~~~~~~l~~~~~iGa~lGa~l~~~l 372 (425)
.....|+++|..+....+.=++|+++|+.+.+.+
T Consensus 76 a~~~~g~~~~~~~~~Yi~AQ~lGA~~ga~l~~~~ 109 (266)
T 3d9s_A 76 ALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGV 109 (266)
T ss_dssp HHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455689999999999999999999999887765
No 9
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli}
Probab=10.17 E-value=1.9e+02 Score=29.13 Aligned_cols=22 Identities=14% Similarity=0.200 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q 014392 355 VAVATIAAFVGQHVVRKLIILL 376 (425)
Q Consensus 355 ~~~~~iGa~lGa~l~~~l~~~~ 376 (425)
++.+.+|+++-..++.++.+..
T Consensus 473 ILmAvVgAlIDD~~VeKiNnel 494 (505)
T 3few_X 473 LLAAVVGALLDDKFADALNKEI 494 (505)
T ss_dssp HHHHHHHHHHCTHHHHHHHHHT
T ss_pred HHHHHHHHHhCHHHHHHHHHHh
Confidence 4556666666666666665543
No 10
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=10.00 E-value=4.2e+02 Score=25.23 Aligned_cols=34 Identities=18% Similarity=0.396 Sum_probs=29.1
Q ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014392 339 EYYLLKRFPVPYALYFVAVATIAAFVGQHVVRKL 372 (425)
Q Consensus 339 ~~~~~g~v~~~~~~~l~~~~~iGa~lGa~l~~~l 372 (425)
.....|+++|..+...++.=++|+++|+.+++.+
T Consensus 130 a~~l~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~ 163 (304)
T 3cn5_A 130 GLFLARKVELLRALVYMIAQCLGAICGVGLVKAF 163 (304)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456789999999999999999999999888755
Done!