Query 014392
Match_columns 425
No_of_seqs 366 out of 1703
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 10:45:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014392.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014392hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 20.0 1.7E+02 0.013 25.0 8.9 17 306-322 46-62 (447)
2 d1j4na_ f.19.1.1 (A:) Aquapori 16.5 2.3E+02 0.017 23.6 8.5 38 336-373 81-118 (249)
3 d1ymga1 f.19.1.1 (A:6-239) Aqu 16.4 93 0.0068 26.1 5.7 35 339-373 69-103 (234)
4 d1cola_ f.1.1.1 (A:) Colicin A 13.6 50 0.0036 27.7 2.8 20 355-374 174-193 (197)
5 d1pw4a_ f.38.1.1 (A:) Glycerol 11.4 4.1E+02 0.03 22.3 21.9 16 361-376 392-407 (447)
6 d1rc2a_ f.19.1.1 (A:) Aquapori 9.5 1.5E+02 0.011 24.4 4.8 35 340-374 70-104 (231)
7 d1q90r_ f.23.12.1 (R:) ISP sub 7.3 1E+02 0.0074 19.0 1.8 25 276-300 6-30 (39)
8 d2ct5a1 g.37.1.6 (A:8-67) Zinc 5.3 95 0.0069 20.9 0.9 15 80-94 37-51 (60)
9 d2iuba2 f.17.3.1 (A:286-349) M 5.2 80 0.0059 21.0 0.5 19 104-122 12-30 (64)
10 d2yvxa3 f.57.1.1 (A:276-448) M 5.0 6.8E+02 0.05 19.5 7.7 80 240-341 85-165 (173)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=20.00 E-value=1.7e+02 Score=24.99 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=11.2
Q ss_pred hHHHHHHHcCCChhHHH
Q 014392 306 IMGPLFLELGVPPQVSS 322 (425)
Q Consensus 306 i~vPlLl~~g~~~~~A~ 322 (425)
+..|.+...|+++.+..
T Consensus 46 ~~~p~~~~~g~s~~~~g 62 (447)
T d1pw4a_ 46 LAMPYLVEQGFSRGDLG 62 (447)
T ss_dssp HHHHHTTSSTTCSSCHH
T ss_pred HHHHHHHHhCcCHHHHH
Confidence 45677766788776543
No 2
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}
Probab=16.45 E-value=2.3e+02 Score=23.56 Aligned_cols=38 Identities=13% Similarity=0.256 Sum_probs=32.5
Q ss_pred HHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 014392 336 SVVEYYLLKRFPVPYALYFVAVATIAAFVGQHVVRKLI 373 (425)
Q Consensus 336 ~~~~~~~~g~v~~~~~~~l~~~~~iGa~lGa~l~~~l~ 373 (425)
-++..+..|++++.......+.-++|+.+|+.+.+.+-
T Consensus 81 VTla~~~~g~i~~~~~~~Yi~aQ~lGa~~g~~~~~~~~ 118 (249)
T d1j4na_ 81 VTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGIT 118 (249)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHhccccchhheeeeeeHHHHHHHHHHhhheeec
Confidence 35566778999999999999999999999998877664
No 3
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}
Probab=16.36 E-value=93 Score=26.10 Aligned_cols=35 Identities=11% Similarity=0.288 Sum_probs=30.5
Q ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 014392 339 EYYLLKRFPVPYALYFVAVATIAAFVGQHVVRKLI 373 (425)
Q Consensus 339 ~~~~~g~v~~~~~~~l~~~~~iGa~lGa~l~~~l~ 373 (425)
.++..|+++|.......+.=++|+.+|+.+.+.+.
T Consensus 69 a~~~~g~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~~ 103 (234)
T d1ymga1 69 AFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVT 103 (234)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHhccCCChhheeeeeehHHHHHHHHHHHHHHHc
Confidence 45668999999999999999999999999887653
No 4
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=13.58 E-value=50 Score=27.72 Aligned_cols=20 Identities=15% Similarity=0.230 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHhHH
Q 014392 355 VAVATIAAFVGQHVVRKLII 374 (425)
Q Consensus 355 ~~~~~iGa~lGa~l~~~l~~ 374 (425)
++.+++|+++...++.++.+
T Consensus 174 li~~~v~alIdd~~~~~iN~ 193 (197)
T d1cola_ 174 LLAAVVGALIDDKFADALNN 193 (197)
T ss_dssp HHHHHHHHHHCTHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 45556666666665555544
No 5
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=11.42 E-value=4.1e+02 Score=22.26 Aligned_cols=16 Identities=6% Similarity=0.150 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHhHHHH
Q 014392 361 AAFVGQHVVRKLIILL 376 (425)
Q Consensus 361 Ga~lGa~l~~~l~~~~ 376 (425)
|+.+|..+...+.+..
T Consensus 392 g~~~~~~~~g~~~~~~ 407 (447)
T d1pw4a_ 392 GSVAASAIVGYTVDFF 407 (447)
T ss_dssp HHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3334444444444443
No 6
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]}
Probab=9.47 E-value=1.5e+02 Score=24.38 Aligned_cols=35 Identities=14% Similarity=0.258 Sum_probs=30.0
Q ss_pred HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 014392 340 YYLLKRFPVPYALYFVAVATIAAFVGQHVVRKLII 374 (425)
Q Consensus 340 ~~~~g~v~~~~~~~l~~~~~iGa~lGa~l~~~l~~ 374 (425)
.+..|+++|+......+.-++|+.+|+.+.+-+.+
T Consensus 70 ~~~~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~i~~ 104 (231)
T d1rc2a_ 70 LWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIAS 104 (231)
T ss_dssp HHHTTCSCTTTHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34579999999999999999999999998876643
No 7
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.28 E-value=1e+02 Score=18.96 Aligned_cols=25 Identities=8% Similarity=-0.080 Sum_probs=17.3
Q ss_pred cchHHHHHHHHHHHHHHHHHhhhcc
Q 014392 276 SFRVFQLVSYCAFGVLAGIVGGLLG 300 (425)
Q Consensus 276 ~~~~~~~~~~~~~G~~aG~vsGl~G 300 (425)
++.++++.-+..+|.+++-..|+++
T Consensus 6 DMgrR~~MNLll~G~~~~~~~g~l~ 30 (39)
T d1q90r_ 6 DMNKRNIMNLILAGGAGLPITTLAL 30 (39)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHhccchhhhhhcc
Confidence 3456677777778888877777654
No 8
>d2ct5a1 g.37.1.6 (A:8-67) Zinc finger BED domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.34 E-value=95 Score=20.88 Aligned_cols=15 Identities=33% Similarity=0.627 Sum_probs=12.9
Q ss_pred HHHHHHHHhhhcCCC
Q 014392 80 AVSTVYYNLKLRHPT 94 (425)
Q Consensus 80 sl~~~~~n~~~rHP~ 94 (425)
..+|+-+.+++|||.
T Consensus 37 NTtNl~~HL~~rHp~ 51 (60)
T d2ct5a1 37 NTSNLSYHLEKNHPE 51 (60)
T ss_dssp STHHHHHHHHHSCHH
T ss_pred CcchHHHHHHhcCHH
Confidence 367999999999986
No 9
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=5.21 E-value=80 Score=20.98 Aligned_cols=19 Identities=21% Similarity=0.502 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014392 104 LALLIQPMLMLGISIGVAF 122 (425)
Q Consensus 104 lalll~P~~llG~~iGv~l 122 (425)
+..++.|++.+.+..|--+
T Consensus 12 it~iflP~t~i~gifGMN~ 30 (64)
T d2iuba2 12 IATIFMPLTFIAGIYGMNF 30 (64)
T ss_dssp HHHHHHHHHHHTTSCC---
T ss_pred HHHHHHHHHHHHhhhccCC
Confidence 4678889988888888543
No 10
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=5.02 E-value=6.8e+02 Score=19.49 Aligned_cols=80 Identities=20% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHhcccccccCCCCCCcchHHHHHHHHHHHHHHHHHhhhccccchhhHHHHH-HHcCCCh
Q 014392 240 VLDLLQIPVSLVVSLYEAISLYKGRRVIASKGDDGKSFRVFQLVSYCAFGVLAGIVGGLLGLGGGFIMGPLF-LELGVPP 318 (425)
Q Consensus 240 ~l~~l~~pv~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~aG~vsGl~GiGGG~i~vPlL-l~~g~~~ 318 (425)
....+.....+++..+...........- ......-++.-.+++++| ..+|++ --+|.||
T Consensus 85 ~~vgll~G~~l~~i~~~~~~~~~~~~l~---------------~vi~~sl~~~~~ia~~~G-----~~lPlll~klg~DP 144 (173)
T d2yvxa3 85 MGVGLLLGLTLSFLLVGKVYWDGHPLLL---------------PVVGVSLVLIVFFANLVG-----AMLPFLLRRLGVDP 144 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCCSSC---------------HHHHHHHHHHHHHHHHHH-----HHHHHHHHHTSCCG
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccHHH---------------HHHHHHHHHHHHHHHHHH-----HHHHHHHHHhCCCh
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHH
Q 014392 319 QVSSATATFAMTFSSSMSVVEYY 341 (425)
Q Consensus 319 ~~A~aTs~~~~~~~s~~~~~~~~ 341 (425)
|++++-+....+-..+...|+
T Consensus 145 --A~aS~P~itti~Di~g~~iyf 165 (173)
T d2yvxa3 145 --ALVSNPLVATLSDVTGLLIYL 165 (173)
T ss_dssp --GGSCSTTHHHHHHHHHHHHHH
T ss_pred --hhhhhhHHHHHHHHHHHHHHH
Done!