BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014396
(425 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain
pdb|4IC3|B Chain B, Crystal Structure Of The F495l Mutant Xiap Ring Domain
Length = 74
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 30/44 (68%), Gaps = 3/44 (6%)
Query: 376 QSEITNYSRQEFERLQNEKVLCRVCFEGDISVVLLPCRHRILCR 419
Q EI+ + ++ RLQ EK LC++C + +I++V +PC H + C+
Sbjct: 9 QKEIS--TEEQLRRLQEEK-LCKICMDRNIAIVFVPCGHLVTCK 49
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
Length = 74
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 30/44 (68%), Gaps = 3/44 (6%)
Query: 376 QSEITNYSRQEFERLQNEKVLCRVCFEGDISVVLLPCRHRILCR 419
Q EI+ + ++ RLQ EK LC++C + +I++V +PC H + C+
Sbjct: 9 QKEIS--TEEQLRRLQEEK-LCKICMDRNIAIVFVPCGHLVTCK 49
>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral
Iap Repeat-Containing Protein 4 From Homo Sapiens
Length = 75
Score = 42.7 bits (99), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 30/44 (68%), Gaps = 3/44 (6%)
Query: 376 QSEITNYSRQEFERLQNEKVLCRVCFEGDISVVLLPCRHRILCR 419
Q EI+ + ++ RLQ EK LC++C + +I++V +PC H + C+
Sbjct: 10 QKEIS--TEEQLRRLQEEK-LCKICMDRNIAIVFVPCGHLVTCK 50
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Query: 385 QEFERLQNEKVLCRVCFEGDISVVLLPCRHRILCR 419
++ RLQ E+ C+VC + ++S+V +PC H ++C+
Sbjct: 16 EQLRRLQEERT-CKVCMDKEVSIVFIPCGHLVVCK 49
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Query: 385 QEFERLQNEKVLCRVCFEGDISVVLLPCRHRILCR 419
++ RLQ E+ C+VC + ++SVV +PC H ++C+
Sbjct: 287 EQLRRLQEERT-CKVCMDKEVSVVFIPCGHLVVCQ 320
>pdb|2EA5|A Chain A, Solution Structure Of The Ring Domain Of The Human Cell
Growth Regulator With Ring Finger Domain 1 Protein
Length = 68
Score = 33.1 bits (74), Expect = 0.29, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 397 CRVCFEGDISVVLLPCRHRILC 418
C VC G ++ VLLPCRH LC
Sbjct: 18 CVVCQNGTVNWVLLPCRHTCLC 39
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 79
Score = 31.6 bits (70), Expect = 0.81, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 385 QEFERLQNEKVLCRVCFEGDISVVLLPCRHRILC 418
QE R E +LC VC E +I+ PC H + C
Sbjct: 9 QEKLRKLKEAMLCMVCCEEEINSTFCPCGHTVCC 42
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 386 EFERLQNEKVLCRVCFEGDISVVLLPCRH 414
+ RLQ E+ C+VC + +S+V +PC H
Sbjct: 6 QLRRLQEERT-CKVCLDRAVSIVFVPCGH 33
>pdb|1T9S|A Chain A, Catalytic Domain Of Human Phosphodiesterase 5a In Complex
With Gmp
pdb|1T9S|B Chain B, Catalytic Domain Of Human Phosphodiesterase 5a In Complex
With Gmp
pdb|1TBF|A Chain A, Catalytic Domain Of Human Phosphodiesterase 5a In Complex
With Sildenafil
Length = 347
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 365 EVWRLQAAL---GQQSEITNYSRQEFERLQNEKVLCRVCFEGDISVVL-LPCRHRILCRY 420
E+ L AA+ Q +IT++S +FE E LC + D+++V +H +LCR+
Sbjct: 27 ELQSLAAAVVPSAQTLKITDFSFSDFELSDLETALCTIRMFTDLNLVQNFQMKHEVLCRW 86
>pdb|3HC8|A Chain A, Investigation Of Aminopyridiopyrazinones As Pde5
Inhibitors: Evaluation Of Modifications To The Central
Ring System.
pdb|3HDZ|A Chain A, Identification, Synthesis, And Sar Of Amino Substituted
Pyrido[3,2b]pryaziones As Potent And Selective Pde5
Inhibitors
Length = 324
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 365 EVWRLQAAL---GQQSEITNYSRQEFERLQNEKVLCRVCFEGDISVVL-LPCRHRILCRY 420
E+ L AA+ Q +IT++S +FE E LC + D+++V +H +LCR+
Sbjct: 4 ELQSLAAAVVPSAQTLKITDFSFSDFELSDLETALCTIRMFTDLNLVQNFQMKHEVLCRW 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.140 0.466
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,153,810
Number of Sequences: 62578
Number of extensions: 472846
Number of successful extensions: 969
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 957
Number of HSP's gapped (non-prelim): 25
length of query: 425
length of database: 14,973,337
effective HSP length: 102
effective length of query: 323
effective length of database: 8,590,381
effective search space: 2774693063
effective search space used: 2774693063
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (25.0 bits)