Query 014396
Match_columns 425
No_of_seqs 274 out of 427
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 04:43:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014396.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014396hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10269 Tmemb_185A: Transmemb 100.0 9.1E-42 2E-46 328.7 3.7 215 28-271 1-218 (238)
2 KOG3879 Predicted membrane pro 100.0 2E-33 4.2E-38 266.1 6.9 183 80-316 9-203 (267)
3 KOG3879 Predicted membrane pro 99.8 1.4E-20 3E-25 179.0 7.0 129 8-159 55-195 (267)
4 PF10269 Tmemb_185A: Transmemb 99.6 7.6E-15 1.7E-19 142.0 8.0 172 12-190 48-238 (238)
5 KOG1101 Apoptosis inhibitor IA 98.4 3.8E-07 8.2E-12 83.1 5.3 56 307-375 50-105 (147)
6 KOG4265 Predicted E3 ubiquitin 98.3 1.4E-07 3E-12 95.8 -0.5 36 390-425 286-321 (349)
7 KOG4275 Predicted E3 ubiquitin 98.2 4.2E-07 9.2E-12 90.3 2.3 32 394-425 300-331 (350)
8 KOG1100 Predicted E3 ubiquitin 98.2 5.1E-07 1.1E-11 86.4 2.0 109 296-423 79-187 (207)
9 PF13920 zf-C3HC4_3: Zinc fing 98.0 1.8E-06 3.8E-11 64.2 1.0 30 395-424 3-32 (50)
10 KOG1571 Predicted E3 ubiquitin 97.5 3.3E-05 7.2E-10 78.9 1.0 32 394-425 305-336 (355)
11 KOG4172 Predicted E3 ubiquitin 96.7 9.4E-05 2E-09 57.2 -3.7 29 396-424 9-37 (62)
12 smart00238 BIR Baculoviral inh 95.7 0.0061 1.3E-07 48.0 1.9 32 306-338 34-65 (71)
13 cd00022 BIR Baculoviral inhibi 95.4 0.0088 1.9E-07 46.9 1.9 32 306-338 32-63 (69)
14 PF13923 zf-C3HC4_2: Zinc fing 95.3 0.0056 1.2E-07 43.2 0.5 26 397-423 1-27 (39)
15 PF00653 BIR: Inhibitor of Apo 95.3 0.0087 1.9E-07 47.5 1.4 32 306-338 34-65 (70)
16 smart00184 RING Ring finger. E 94.9 0.0096 2.1E-07 39.6 0.7 25 397-422 1-25 (39)
17 KOG4692 Predicted E3 ubiquitin 93.9 0.026 5.6E-07 58.3 1.5 28 393-421 421-448 (489)
18 KOG1785 Tyrosine kinase negati 93.3 0.025 5.5E-07 59.1 0.2 29 394-423 369-397 (563)
19 PF13445 zf-RING_UBOX: RING-ty 92.8 0.041 8.8E-07 40.4 0.6 25 397-423 1-29 (43)
20 PF00097 zf-C3HC4: Zinc finger 92.7 0.041 8.9E-07 38.7 0.5 26 397-423 1-27 (41)
21 KOG1814 Predicted E3 ubiquitin 90.9 0.075 1.6E-06 55.8 0.3 35 388-423 178-215 (445)
22 PF14634 zf-RING_5: zinc-RING 89.9 0.098 2.1E-06 37.9 0.1 27 397-424 2-31 (44)
23 PF14447 Prok-RING_4: Prokaryo 89.3 0.15 3.3E-06 39.6 0.7 27 395-422 8-34 (55)
24 PF15227 zf-C3HC4_4: zinc fing 88.4 0.21 4.6E-06 36.2 1.0 25 397-422 1-25 (42)
25 KOG0978 E3 ubiquitin ligase in 87.4 0.18 3.9E-06 56.3 0.1 38 383-422 633-670 (698)
26 PHA02929 N1R/p28-like protein; 86.9 0.28 6.1E-06 48.3 1.2 27 395-422 175-209 (238)
27 cd00162 RING RING-finger (Real 86.7 0.28 6.1E-06 33.6 0.8 26 396-422 1-27 (45)
28 COG5236 Uncharacterized conser 83.7 0.2 4.4E-06 51.8 -1.6 31 393-424 60-90 (493)
29 PF13639 zf-RING_2: Ring finge 82.2 0.6 1.3E-05 33.4 0.8 26 396-422 2-30 (44)
30 PHA02926 zinc finger-like prot 74.8 1.2 2.6E-05 43.9 0.6 27 395-422 171-206 (242)
31 KOG0823 Predicted E3 ubiquitin 73.5 1.4 3E-05 43.4 0.7 26 395-421 48-73 (230)
32 COG5243 HRD1 HRD ubiquitin lig 68.0 2.2 4.7E-05 44.8 0.8 28 388-415 281-321 (491)
33 smart00504 Ubox Modified RING 67.3 2.3 5.1E-05 32.1 0.7 25 396-421 3-27 (63)
34 KOG0317 Predicted E3 ubiquitin 61.7 2.1 4.6E-05 43.3 -0.6 26 395-421 240-265 (293)
35 KOG0320 Predicted E3 ubiquitin 61.6 2 4.4E-05 40.8 -0.7 28 395-423 132-161 (187)
36 COG5574 PEX10 RING-finger-cont 60.2 2.3 5E-05 42.6 -0.7 26 395-421 216-241 (271)
37 KOG2164 Predicted E3 ubiquitin 55.7 5.3 0.00011 43.4 1.0 27 394-421 186-212 (513)
38 PF10367 Vps39_2: Vacuolar sor 51.7 19 0.0004 29.7 3.5 30 394-424 78-109 (109)
39 KOG4159 Predicted E3 ubiquitin 45.9 6.9 0.00015 41.5 0.0 63 348-421 48-110 (398)
40 KOG2879 Predicted E3 ubiquitin 38.3 15 0.00032 37.3 1.1 33 390-423 235-268 (298)
41 KOG0802 E3 ubiquitin ligase [P 37.9 17 0.00036 39.7 1.5 31 390-421 287-322 (543)
42 KOG2113 Predicted RNA binding 37.6 18 0.00039 37.5 1.6 29 395-423 344-372 (394)
43 COG5152 Uncharacterized conser 36.4 6.8 0.00015 38.1 -1.6 27 396-423 198-224 (259)
44 KOG3039 Uncharacterized conser 35.3 16 0.00035 36.7 0.8 32 393-425 220-255 (303)
45 PF04710 Pellino: Pellino; In 26.1 22 0.00048 37.8 0.0 14 403-416 356-369 (416)
46 KOG2113 Predicted RNA binding 26.1 39 0.00085 35.1 1.7 31 394-424 136-166 (394)
47 COG5540 RING-finger-containing 25.3 46 0.00099 34.5 2.0 23 393-415 322-347 (374)
48 smart00744 RINGv The RING-vari 24.1 48 0.001 24.7 1.5 18 396-413 1-20 (49)
49 KOG4628 Predicted E3 ubiquitin 22.4 45 0.00098 34.9 1.4 21 396-416 231-254 (348)
No 1
>PF10269 Tmemb_185A: Transmembrane Fragile-X-F protein ; InterPro: IPR019396 This entry represents conserved transmembrane proteins that in humans are expressed from a region upstream of the FragileXF site and appear to be intimately linked with Fragile-X syndrome. The absence of the human TMEM185A protein does not necessarily lead to developmental delay, but might, in combination with other, currently unknown, factors. Alternatively, the TMEM185A protein is either redundant, or its function can be complemented by the highly similar chromosome 2 retro-pseudogene product, TMEM185B [].
Probab=100.00 E-value=9.1e-42 Score=328.74 Aligned_cols=215 Identities=48% Similarity=0.826 Sum_probs=178.8
Q ss_pred HhcCCccccchhHHHHHHHHHHHHHHhccccCCCCCCCCCccccchhHHHHHHHHHHHHHHHHHHhccccccccccccee
Q 014396 28 LKLDHVISYSWWIVFFPVWIFHAVVARGRFSLPAPSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLK 107 (425)
Q Consensus 28 LKLDg~I~wSWwvVFiPLWI~~~lv~rg~~~~~~~~~~~~r~wa~~~s~v~l~LLl~FeiLLc~kLe~~~~~~~~~~~w~ 107 (425)
||+||.++||||.||+|+|++++++++|.+........+++.++.+++....+++++||+|+|.||++... .+|.
T Consensus 1 LrlD~~i~wsww~VF~Plw~~~~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~lll~~f~~llc~~L~~~~~-----~~w~ 75 (238)
T PF10269_consen 1 LRLDGVISWSWWIVFIPLWIWKAIVIVGAFVGIAVSRPRVDFKAMLISVVAHLLLLAFELLLCIKLEGGSS-----ISWS 75 (238)
T ss_pred CccCceeeccHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHheeecCCCCc-----ceee
Confidence 69999999999999999999999999988665544445566666666667778899999999999965555 7999
Q ss_pred eehhhHHHHHH---HHHHHHhhhhhccCCCCCCcchhHHHHhhcchHHHHHHHHHHHHHHHHhhhhhcccccccceEEEe
Q 014396 108 IVFLPLLAFEI---TILIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLF 184 (425)
Q Consensus 108 iVFiPL~~l~~---~l~v~~fr~C~~~~~g~~~sl~~e~~~~~~~~fw~~ismlf~laa~vfl~LKLDg~~~~~~W~vVF 184 (425)
+||+|+|++.+ ..+++++|| +||+++++++++.+++.+++|..++++|.++|++|+++|||+. ++|+||+||
T Consensus 76 ~VFiPL~~l~~~~I~~~i~~~r~----~~~~~e~~~~~~~~~~~~~~~~~l~~if~~~f~v~l~Lkld~~-i~~sW~~vF 150 (238)
T PF10269_consen 76 IVFIPLFVLSALSILICIWNFRH----MPGDGEEMSDRSIWFELPFFWNILSLIFFLAFTVFLALKLDGV-IDWSWWIVF 150 (238)
T ss_pred eeeechhhHHHHHHHHHHHhhcc----CcccccCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCc-ccccHHHHH
Confidence 99999987764 777788888 7899899999999999999999999999999999999999999 999999999
Q ss_pred ehHHHHHHHHHHhhccCCCccccCCCCCCCCCCcceeeeeeeccceeecccccCCCCCccccccccceeehhhHHHHHHH
Q 014396 185 INFGIAECFAFLVCTKWSNPVIHRSPQTRPATSSSAITYLDWNSGLVVSAEEEQNPDGMCGLSDIGGHIMKVPVIGFQVL 264 (425)
Q Consensus 185 IPlWI~l~~~~l~c~~~~~p~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~q~~~~~~~~i~~~~~~ip~~~f~il 264 (425)
||+||.+++++++|.-. .+..++|.+++++...++++++.|.+.|+ |++++++|+++||+|
T Consensus 151 iPl~i~~~~~~~~~~~~---------------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~l~F~vL 211 (238)
T PF10269_consen 151 IPLWIADGLAFLVCLYS---------------IIMSIRYLDRNPGLLPSQRRSSLQSRICW----GGLFLVIPLLVFQVL 211 (238)
T ss_pred HHHHHHHHHHHHHHHHH---------------HHHHHHHHhccCCCchhhHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 99999999999975331 22344566776555444444444444322 559999999999999
Q ss_pred HHHhhcc
Q 014396 265 LCMHLEG 271 (425)
Q Consensus 265 L~~~Ldg 271 (425)
||+||||
T Consensus 212 L~~kLe~ 218 (238)
T PF10269_consen 212 LCMKLEG 218 (238)
T ss_pred HHHHhcC
Confidence 9999999
No 2
>KOG3879 consensus Predicted membrane protein [Function unknown]
Probab=99.98 E-value=2e-33 Score=266.07 Aligned_cols=183 Identities=25% Similarity=0.380 Sum_probs=165.0
Q ss_pred HHHHHHHHHHHHHhcccccccccccceeeehhhHHHHHH---HHHHHHhhhhhccCCCCCCcchhHHHHhhcchHHHHHH
Q 014396 80 PLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEI---TILIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAIS 156 (425)
Q Consensus 80 ~LLl~FeiLLc~kLe~~~~~~~~~~~w~iVFiPL~~l~~---~l~v~~fr~C~~~~~g~~~sl~~e~~~~~~~~fw~~is 156 (425)
+++++||+|.|+|||.+++ -|.+||+|++..++ ++|+|++|| +++++.|.. +++|
T Consensus 9 l~llmfe~lvcdkle~~~h------fw~lvf~plff~s~vsvgacvw~~Rh--------d~a~ele~~--------~avn 66 (267)
T KOG3879|consen 9 LLLLMFEVLVCDKLERDYH------FWLLVFMPLFFVSPVSVGACVWGFRH--------DLAFELEFT--------WAVN 66 (267)
T ss_pred HHHHHHHHHHhhhhccCce------ehHHHHHHHHhcChhhhhhhhhhhhc--------chHHHHHHH--------HHHH
Confidence 7799999999999999998 69999999999875 999999999 999999888 9999
Q ss_pred HHHHHHHHHHhhhhhcccccccceEEEeehHHHHHHHHHHhhccCCCccccCCCCCCCCCCcceeeeeeeccceeecccc
Q 014396 157 MVFFVAATVFTLLKLCGYVGALGWWDLFINFGIAECFAFLVCTKWSNPVIHRSPQTRPATSSSAITYLDWNSGLVVSAEE 236 (425)
Q Consensus 157 mlf~laa~vfl~LKLDg~~~~~~W~vVFIPlWI~l~~~~l~c~~~~~p~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 236 (425)
++| +||+++|||.. +.|+|-+||||+||+++++.++ |+||++|+ ++++||+|
T Consensus 67 ilq----lIflaLKLD~~-v~WnW~VVFvPlWI~~sil~V~----------------------VLy~iv~s-~~~lrs~~ 118 (267)
T KOG3879|consen 67 ILQ----LIFLALKLDKI-VHWNWFVVFVPLWIFDSILLVV----------------------VLYKIVWS-VLFLRSRD 118 (267)
T ss_pred HHH----HHHHHHhcCcc-cCCceEEEeehHHHHHHHHHHH----------------------HHHHHHHH-HHhccccc
Confidence 999 99999999999 9999999999999999999999 99999999 99999999
Q ss_pred -cCCCCCccccc-cccceeehhhHHHHHHHHHHhhcc-------hhHHHHHHHHHHHHHHHHHcCCCCcceEEEeccccc
Q 014396 237 -EQNPDGMCGLS-DIGGHIMKVPVIGFQVLLCMHLEG-------VGVVFSTTRLVEKIVILLRSGAGTGIYFRISSRAHD 307 (425)
Q Consensus 237 -~~~q~~~~~~~-~i~~~~~~ip~~~f~ilL~~~Ldg-------~~v~~~~~~l~e~~~~~~~~~~~~~~~~~~~s~~~~ 307 (425)
+++|||+ ++. ++++++.|+|.++||++||.|||| +-++-.++-++-.+...+-+.+|+.|||-++ +|
T Consensus 119 v~p~~rr~-~l~~ai~~i~~Vlp~Laf~VlLc~KLdg~~t~~sy~~vfaPLwlsl~t~i~~s~~kggn~wwFGiR---k~ 194 (267)
T KOG3879|consen 119 VIPEQRRT-HLTMAIWNITIVLPLLAFQVLLCHKLDGHNTTFSYIVVFAPLWLSLLTAIATSGSKGGNHWWFGIR---KD 194 (267)
T ss_pred cCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCccccceEEEEHHHHHHHHHHHHHHhccCCCceEEEEec---ch
Confidence 9999999 999 999999999999999999999998 5556666655555555555577889999998 88
Q ss_pred cccccccCc
Q 014396 308 CFGFLHRGS 316 (425)
Q Consensus 308 ~~~~~~~~~ 316 (425)
|..|+-.-+
T Consensus 195 fcqflle~~ 203 (267)
T KOG3879|consen 195 FCQFLLEIF 203 (267)
T ss_pred HHHHHHHHC
Confidence 887765433
No 3
>KOG3879 consensus Predicted membrane protein [Function unknown]
Probab=99.82 E-value=1.4e-20 Score=178.97 Aligned_cols=129 Identities=26% Similarity=0.475 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHh---------ccccCCCCCCCCCccccchhH---
Q 014396 8 KSVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVAR---------GRFSLPAPSVPHNRHWAPCHA--- 75 (425)
Q Consensus 8 ~~~~~~~~~~~LLlF~ILLaLKLDg~I~wSWwvVFiPLWI~~~lv~r---------g~~~~~~~~~~~~r~wa~~~s--- 75 (425)
++|+..++|+.-++|+|++|||||.+++|||.+||+||||+|++.+. +.+.|+++..++.+.-..+.+
T Consensus 55 ~a~ele~~~avnilqlIflaLKLD~~v~WnW~VVFvPlWI~~sil~V~VLy~iv~s~~~lrs~~v~p~~rr~~l~~ai~~ 134 (267)
T KOG3879|consen 55 LAFELEFTWAVNILQLIFLALKLDKIVHWNWFVVFVPLWIFDSILLVVVLYKIVWSVLFLRSRDVIPEQRRTHLTMAIWN 134 (267)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCcccCCceEEEeehHHHHHHHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999998884 226666666666443322222
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccccccceeeehhhHHHHHHHHHHHHhhhhhccCCCCCCcchhHHHHhhcchHHHHH
Q 014396 76 IVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITILIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAI 155 (425)
Q Consensus 76 ~v~l~LLl~FeiLLc~kLe~~~~~~~~~~~w~iVFiPL~~l~~~l~v~~fr~C~~~~~g~~~sl~~e~~~~~~~~fw~~i 155 (425)
++.++++++||++||.||||..++ ++++.||+|+|+++.++++...+. .+||||+++
T Consensus 135 i~~Vlp~Laf~VlLc~KLdg~~t~----~sy~~vfaPLwlsl~t~i~~s~~k-------------------ggn~wwFGi 191 (267)
T KOG3879|consen 135 ITIVLPLLAFQVLLCHKLDGHNTT----FSYIVVFAPLWLSLLTAIATSGSK-------------------GGNHWWFGI 191 (267)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccc----ceEEEEHHHHHHHHHHHHHHhccC-------------------CCceEEEEe
Confidence 466688999999999999988732 899999999999999888766542 369999999
Q ss_pred HHHH
Q 014396 156 SMVF 159 (425)
Q Consensus 156 smlf 159 (425)
+-.+
T Consensus 192 Rk~f 195 (267)
T KOG3879|consen 192 RKDF 195 (267)
T ss_pred cchH
Confidence 8887
No 4
>PF10269 Tmemb_185A: Transmembrane Fragile-X-F protein ; InterPro: IPR019396 This entry represents conserved transmembrane proteins that in humans are expressed from a region upstream of the FragileXF site and appear to be intimately linked with Fragile-X syndrome. The absence of the human TMEM185A protein does not necessarily lead to developmental delay, but might, in combination with other, currently unknown, factors. Alternatively, the TMEM185A protein is either redundant, or its function can be complemented by the highly similar chromosome 2 retro-pseudogene product, TMEM185B [].
Probab=99.55 E-value=7.6e-15 Score=142.01 Aligned_cols=172 Identities=23% Similarity=0.281 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHhcc-----c-cCCCCCCCCCccccc-hhHH--HHHHHH
Q 014396 12 AVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVARGR-----F-SLPAPSVPHNRHWAP-CHAI--VATPLL 82 (425)
Q Consensus 12 ~~~~~~~LLlF~ILLaLKLDg~I~wSWwvVFiPLWI~~~lv~rg~-----~-~~~~~~~~~~r~wa~-~~s~--v~l~LL 82 (425)
.+..+.+++.|.++++.||++.-+.+|..||+|+|+..++.+... + ..+.+...++..|.. .+.. +.....
T Consensus 48 ~~~~~lll~~f~~llc~~L~~~~~~~w~~VFiPL~~l~~~~I~~~i~~~r~~~~~~e~~~~~~~~~~~~~~~~~l~~if~ 127 (238)
T PF10269_consen 48 SVVAHLLLLAFELLLCIKLEGGSSISWSIVFIPLFVLSALSILICIWNFRHMPGDGEEMSDRSIWFELPFFWNILSLIFF 127 (238)
T ss_pred HHHHHHHHHHHHHHheeecCCCCcceeeeeeechhhHHHHHHHHHHHhhccCcccccCCCCchhhhhhhHHHHHHHHHHH
Confidence 557888999999999999988889999999999998887666322 2 111122222222321 1222 333557
Q ss_pred HHHHHHHHHHhcccccccccccceeeehhhHHHHHHHHH----HHHhhhhhccCCCCCCcchhHHHHhhcchHHH--HHH
Q 014396 83 IAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITIL----IDNFRMCRALMPGDEESMNDEAIWEALPHFWV--AIS 156 (425)
Q Consensus 83 l~FeiLLc~kLe~~~~~~~~~~~w~iVFiPL~~l~~~l~----v~~fr~C~~~~~g~~~sl~~e~~~~~~~~fw~--~is 156 (425)
++|.++++.|||+... ++|..||+|+|+.+.... .....+++......+...+++.- +.....+. ..-
T Consensus 128 ~~f~v~l~Lkld~~i~-----~sW~~vFiPl~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 201 (238)
T PF10269_consen 128 LAFTVFLALKLDGVID-----WSWWIVFIPLWIADGLAFLVCLYSIIMSIRYLDRNPGLLPSQRRS-SLQSRICWGGLFL 201 (238)
T ss_pred HHHHHHHHHhcCCccc-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHH-HHHHHHHHHHHHH
Confidence 7999999999999988 999999999999987322 23344553333322222222111 01111222 223
Q ss_pred HHHHHHHHHHhhhhhccccc----ccceEEEeehHHHH
Q 014396 157 MVFFVAATVFTLLKLCGYVG----ALGWWDLFINFGIA 190 (425)
Q Consensus 157 mlf~laa~vfl~LKLDg~~~----~~~W~vVFIPlWI~ 190 (425)
+..+++|+++++.||||+ . +.+...+|+|++++
T Consensus 202 ~i~~l~F~vLL~~kLe~~-~~~~~~~~~~~vf~PL~i~ 238 (238)
T PF10269_consen 202 VIPLLVFQVLLCMKLEGT-PWSAANIPISVVFIPLFIL 238 (238)
T ss_pred HHHHHHHHHHHHHHhcCC-ccccccccHHHHHHHHHhC
Confidence 455688999999999999 8 89999999999983
No 5
>KOG1101 consensus Apoptosis inhibitor IAP1 and related BIR domain proteins [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.39 E-value=3.8e-07 Score=83.13 Aligned_cols=56 Identities=25% Similarity=0.372 Sum_probs=49.6
Q ss_pred ccccccccCccccccccCCCCChHHHhhhhhcCCCCCccccCCCcchhhccCchhhhHHHHHHHHhhcc
Q 014396 307 DCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAALGQ 375 (425)
Q Consensus 307 ~~~~~~~~~~~l~~~W~~~~~~~ee~ar~~~~~~~~~~~~c~~~p~~V~~~~~~e~vqe~~r~~~~l~e 375 (425)
|.+.=.+|++.|-+ |+++||||+|||+|+|. | ++|+..|++|++-.++....++.+
T Consensus 50 D~~~Cf~C~~~L~~-We~~DDPW~EH~k~~p~--------C----~F~~~~k~~e~~~~v~~~~~~~~~ 105 (147)
T KOG1101|consen 50 DCVKCFFCSGGLDD-WEPGDDPWEEHAKWSPE--------C----EFLKLKKGREFLGTVQSTARALLA 105 (147)
T ss_pred CceECcccCccccc-CCCCCCcHHHHHhhCCC--------C----ceeecccchhhhhHHHHhHhhhhh
Confidence 99999999999999 99999999999999999 9 999999999998877765543433
No 6
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=1.4e-07 Score=95.85 Aligned_cols=36 Identities=31% Similarity=0.587 Sum_probs=31.1
Q ss_pred hhhccccccccccCceeEEEecCCcccccccccCCC
Q 014396 390 LQNEKVLCRVCFEGDISVVLLPCRHRILCRYDHLTL 425 (425)
Q Consensus 390 l~~e~~~CkiC~~~~~~vv~lPC~H~~~C~~Ca~~l 425 (425)
.+++.+.|+||+++.+|+++|||||+|+|+.||..|
T Consensus 286 ~~~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~L 321 (349)
T KOG4265|consen 286 ESESGKECVICLSESRDTVVLPCRHLCLCSGCAKSL 321 (349)
T ss_pred cccCCCeeEEEecCCcceEEecchhhehhHhHHHHH
Confidence 334456899999999999999999999999999753
No 7
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=4.2e-07 Score=90.31 Aligned_cols=32 Identities=25% Similarity=0.656 Sum_probs=29.4
Q ss_pred cccccccccCceeEEEecCCcccccccccCCC
Q 014396 394 KVLCRVCFEGDISVVLLPCRHRILCRYDHLTL 425 (425)
Q Consensus 394 ~~~CkiC~~~~~~vv~lPC~H~~~C~~Ca~~l 425 (425)
+.+|+||||.++|.|||||||.|+|.+|..++
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm 331 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRM 331 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhcccc
Confidence 34899999999999999999999999998764
No 8
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=5.1e-07 Score=86.43 Aligned_cols=109 Identities=15% Similarity=0.232 Sum_probs=73.1
Q ss_pred cceEEEeccccccccccccCccccccccCCCCChHHHhhhhhcCCCCCccccCCCcchhhccCchhhhHHHHHHHHhhcc
Q 014396 296 GIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAALGQ 375 (425)
Q Consensus 296 ~~~~~~~s~~~~~~~~~~~~~~l~~~W~~~~~~~ee~ar~~~~~~~~~~~~c~~~p~~V~~~~~~e~vqe~~r~~~~l~e 375 (425)
.+|+....|...+-....+|=...++|.++.+.-..| ...+.. + +.++..++.+.....+....+
T Consensus 79 ~~~l~~~~~~~~~e~~~w~~~a~~ne~~~~~l~~nl~-q~~~~~----------~-~~~~~~~~~~~~~g~~~~~~~--- 143 (207)
T KOG1100|consen 79 NWELEERVKSLYVEAQIWRDRAQTNEATVNSLRTNLD-QVLAQC----------P-ASAPAEERGQKSCGDREADDG--- 143 (207)
T ss_pred cceehhhhhhhhhhHHHHHHHHHhChHHHHHHHHHHH-HHHHhc----------c-cccCchhhhccccCccccccc---
Confidence 6788888888888888888888888787777544333 333441 1 223233333322223322111
Q ss_pred CcccccccHHHHHHhhhccccccccccCceeEEEecCCcccccccccC
Q 014396 376 QSEITNYSRQEFERLQNEKVLCRVCFEGDISVVLLPCRHRILCRYDHL 423 (425)
Q Consensus 376 q~~~~~~~~~e~~~l~~e~~~CkiC~~~~~~vv~lPC~H~~~C~~Ca~ 423 (425)
. .++..++.++....+. |+.|.+++.+|+++||+|+++|..|+.
T Consensus 144 -~--s~~~~~~~~~~~~~~~-Cr~C~~~~~~VlllPCrHl~lC~~C~~ 187 (207)
T KOG1100|consen 144 -K--SSYVDPSVDNFKRMRS-CRKCGEREATVLLLPCRHLCLCGICDE 187 (207)
T ss_pred -c--ccccchhhhhhhcccc-ceecCcCCceEEeecccceEecccccc
Confidence 1 1355667777777763 999999999999999999999999985
No 9
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.01 E-value=1.8e-06 Score=64.22 Aligned_cols=30 Identities=40% Similarity=0.763 Sum_probs=26.6
Q ss_pred ccccccccCceeEEEecCCcccccccccCC
Q 014396 395 VLCRVCFEGDISVVLLPCRHRILCRYDHLT 424 (425)
Q Consensus 395 ~~CkiC~~~~~~vv~lPC~H~~~C~~Ca~~ 424 (425)
..|.||+++..++++.||||.+.|.+|+.+
T Consensus 3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~ 32 (50)
T PF13920_consen 3 EECPICFENPRDVVLLPCGHLCFCEECAER 32 (50)
T ss_dssp SB-TTTSSSBSSEEEETTCEEEEEHHHHHH
T ss_pred CCCccCCccCCceEEeCCCChHHHHHHhHH
Confidence 479999999999999999999999999753
No 10
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=3.3e-05 Score=78.86 Aligned_cols=32 Identities=34% Similarity=0.672 Sum_probs=28.8
Q ss_pred cccccccccCceeEEEecCCcccccccccCCC
Q 014396 394 KVLCRVCFEGDISVVLLPCRHRILCRYDHLTL 425 (425)
Q Consensus 394 ~~~CkiC~~~~~~vv~lPC~H~~~C~~Ca~~l 425 (425)
...|.||.|++.|++|+||||+|+|..|+..+
T Consensus 305 p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l 336 (355)
T KOG1571|consen 305 PDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHL 336 (355)
T ss_pred CCceEEecCCccceeeecCCcEEEchHHHhhC
Confidence 34799999999999999999999999998653
No 11
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=9.4e-05 Score=57.20 Aligned_cols=29 Identities=31% Similarity=0.724 Sum_probs=27.1
Q ss_pred cccccccCceeEEEecCCcccccccccCC
Q 014396 396 LCRVCFEGDISVVLLPCRHRILCRYDHLT 424 (425)
Q Consensus 396 ~CkiC~~~~~~vv~lPC~H~~~C~~Ca~~ 424 (425)
.|.||+|+++|.|+--|||++.|-+|+.+
T Consensus 9 ECTICye~pvdsVlYtCGHMCmCy~Cg~r 37 (62)
T KOG4172|consen 9 ECTICYEHPVDSVLYTCGHMCMCYACGLR 37 (62)
T ss_pred ceeeeccCcchHHHHHcchHHhHHHHHHH
Confidence 59999999999999999999999999754
No 12
>smart00238 BIR Baculoviral inhibition of apoptosis protein repeat. Domain found in inhibitor of apoptosis proteins (IAPs) and other proteins. Acts as a direct inhibitor of caspase enzymes.
Probab=95.69 E-value=0.0061 Score=48.03 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=28.0
Q ss_pred cccccccccCccccccccCCCCChHHHhhhhhc
Q 014396 306 HDCFGFLHRGSRLLGWWSIDEGSREDQARLVHE 338 (425)
Q Consensus 306 ~~~~~~~~~~~~l~~~W~~~~~~~ee~ar~~~~ 338 (425)
.|-+.=.+||..+.+ |+++|+||+||++++|.
T Consensus 34 ~d~v~C~~C~~~l~~-w~~~d~p~~~H~~~~p~ 65 (71)
T smart00238 34 GDEVKCFFCGGELDN-WEPGDDPWEEHKKWSPN 65 (71)
T ss_pred CCEEEeCCCCCCcCC-CCCCCCHHHHHhHhCcC
Confidence 445666679999999 99999999999999999
No 13
>cd00022 BIR Baculoviral inhibition of apoptosis protein repeat domain; Found in inhibitors of apoptosis proteins (IAPs) and other proteins. In higher eukaryotes, BIR domains inhibit apoptosis by acting as direct inhibitors of the caspase family of protease enzymes. In yeast, BIR domains are involved in regulating cytokinesis. This novel fold is stabilized by zinc tetrahedrally coordinated by one histidine and three cysteine residues and resembles a classical zinc finger.
Probab=95.40 E-value=0.0088 Score=46.85 Aligned_cols=32 Identities=19% Similarity=0.302 Sum_probs=28.8
Q ss_pred cccccccccCccccccccCCCCChHHHhhhhhc
Q 014396 306 HDCFGFLHRGSRLLGWWSIDEGSREDQARLVHE 338 (425)
Q Consensus 306 ~~~~~~~~~~~~l~~~W~~~~~~~ee~ar~~~~ 338 (425)
.|-+.=.+|+..+.+ |+++|+||+||+++.|.
T Consensus 32 ~d~v~C~~C~~~~~~-w~~~d~p~~~H~~~~p~ 63 (69)
T cd00022 32 GDEVKCFFCGLELKN-WEPGDDPWEEHKRWSPN 63 (69)
T ss_pred CCEEEeCCCCCCccC-CCCCCCHHHHHhHhCcC
Confidence 566666789999999 99999999999999999
No 14
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=95.33 E-value=0.0056 Score=43.18 Aligned_cols=26 Identities=27% Similarity=0.686 Sum_probs=22.3
Q ss_pred ccccccCceeE-EEecCCcccccccccC
Q 014396 397 CRVCFEGDISV-VLLPCRHRILCRYDHL 423 (425)
Q Consensus 397 CkiC~~~~~~v-v~lPC~H~~~C~~Ca~ 423 (425)
|.||++...+. +++||||.. |.+|..
T Consensus 1 C~iC~~~~~~~~~~~~CGH~f-C~~C~~ 27 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSF-CKECIE 27 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEE-EHHHHH
T ss_pred CCCCCCcccCcCEECCCCCch-hHHHHH
Confidence 78999999999 799999996 999864
No 15
>PF00653 BIR: Inhibitor of Apoptosis domain; InterPro: IPR001370 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The baculovirus inhibitor of apoptosis protein repeat (BIR) is a domain of tandem repeats separated by a variable length linker that seems to confer cell death-preventing activity [, ]. The BIR domains characterise the Inhibitor of Apoptosis (IAP) family of proteins (MEROPS proteinase inhibitor family I32, clan IV) that suppress apoptosis by interacting with and inhibiting the enzymatic activity of both initiator and effector caspases (MEROPS peptidase family C14, IPR002398 from INTERPRO). Several distinct mammalian IAPs including XIAP, c-IAP1, c-IAP2, and ML-IAP, have been identified, and they all exhibit antiapoptotic activity in cell culture. The functional unit in each IAP protein is the baculoviral IAP repeat (BIR), which contains approximately 80 amino acids folded around a zinc atom. Most mammalian IAPs have more than one BIR domain, with the different BIR domains performing distinct functions. For example, in XIAP, the third BIR domain (BIR3) potently inhibits the catalytic activity of caspase-9, whereas the linker sequences immediately preceding the second BIR domain (BIR2) selectively targets caspase-3 or -7. The first-recognised members of family MEROPS inhibitor family I32 were viral proteins that inhibited the apoptosis of infected cells: Cp-IAP from Cydia pomonella granulosis virus (CpGV) [] and Op-IAP from Orgyia pseudotsugata multicapsid polyhedrosis virus(OpMNPV) []. The discovery of homologous proteins in mammals followed soon after with the recognition that mutations in the gene for neuronal apoptosis inhibitory protein (NIAP) underlie spinal muscular atrophy []. The inhibitors in family I32 all possess one or more 80-residue domains known as BIR (baculovirus inhibitor repeat) domains and have accordingly been termed 'BIR-containing' or 'BIRC' proteins as well as IAP proteins. The mechanism of inhibition of caspases by the IAP proteins is complex, and reactive site residues cannot yet be identified with any confidence. Despite the conservation of the BIR or IAP (inhibitor of apoptosis) domains throughout the family it seems clear that other parts of the molecules also make essential contributions to inhibitory activity. Homologs of most components in the mammalian apoptotic pathway have been identified in fruit flies. The Drosophila Apaf-1, known as Dapaf-1, HAC-1 or Dark, shares significant sequence similarity with its mammalian counterpart, and is critically important for the activation of the Drosophila initiator caspase Dronc. Dronc, in turn, cleaves and activates the effector caspase DrICE. The Drosophila IAP, DIAP1, binds to and in-activates both DrICE and Dronc through its BIR1 and BIR2 domains. During apoptosis, the anti-death function of DIAP1 is countered by at least four pro-apoptotic proteins, Reaper, Hid, Grim, and sickle, through direct physical interactions. These four proteins represent the functional homologs of the mammalian protein Smac, and they all share a conserved IAP-binding motif at their N termini. The three proteins Reaper, Hid, and Grim are collectively referred to as the RHG proteins [, ]. Both XIAP and DIAP1 contain a RING domain at their C termini, and can act as an E3 ubiquitin ligase. Indeed, both XIAP and DIAP1 have been shown to promote self-ubiquitination and degradation as well as to negatively regulate the target caspases. Nonetheless, important differences exist between XIAP and DIAP1. The primary function of XIAP is thought to inhibit the catalytic activities of caspases; to what extent the ubiquitinating activity of XIAP contributes to its function remains unclear. For DIAP1, however, the ubiquitinating activity appears to be essential for its function. Recently a Drosophila p53 protein has been identified that mediates apoptosis via a novel pathway involving the activation of the Reaper gene and subsequent inhibition of the inhibitors of apoptosis (IAPs). CIAP1, a major mammalian homologue of Drosophila IAPs, is irreversibly inhibited (cleaved) during p53-dependent apoptosis and this cleavage is mediated by a serine protease. Serine protease inhibitors that block CIAP1 cleavage inhibit p53-dependent apoptosis. Furthermore, activation of the p53 protein increases the transcription of the HTRA2 gene, which encodes a serine protease that interacts with CIAP1 and potentiates apoptosis. Therefore mammalian p53 protein activates apoptosis through a novel pathway functionally similar to that in Drosophila, which involves HTRA2 and subsequent inhibition of CIAP1 by cleavage [].; GO: 0005622 intracellular; PDB: 3HL5_B 3UW5_A 3CM7_A 1G3F_A 1G73_C 3G76_G 3CM2_C 2VSL_A 2OPZ_B 3CLX_A ....
Probab=95.26 E-value=0.0087 Score=47.46 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=27.3
Q ss_pred cccccccccCccccccccCCCCChHHHhhhhhc
Q 014396 306 HDCFGFLHRGSRLLGWWSIDEGSREDQARLVHE 338 (425)
Q Consensus 306 ~~~~~~~~~~~~l~~~W~~~~~~~ee~ar~~~~ 338 (425)
.|-+.=.+||..+.+ |+.+|+||+||.++.|+
T Consensus 34 ~d~v~C~~C~~~l~~-w~~~Ddp~~~H~~~sp~ 65 (70)
T PF00653_consen 34 GDRVRCFYCGLELDN-WEPNDDPWEEHKRHSPN 65 (70)
T ss_dssp TTEEEETTTTEEEES--STT--HHHHHHHHSTT
T ss_pred CCEEEEeccCCEEeC-CCCCCCHHHHHHHHCcC
Confidence 788888899999999 89999999999999999
No 16
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=94.92 E-value=0.0096 Score=39.60 Aligned_cols=25 Identities=40% Similarity=0.874 Sum_probs=22.5
Q ss_pred ccccccCceeEEEecCCccccccccc
Q 014396 397 CRVCFEGDISVVLLPCRHRILCRYDH 422 (425)
Q Consensus 397 CkiC~~~~~~vv~lPC~H~~~C~~Ca 422 (425)
|.||++...+.+.+||||.. |.+|.
T Consensus 1 C~iC~~~~~~~~~~~C~H~~-c~~C~ 25 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTF-CRSCI 25 (39)
T ss_pred CCcCccCCCCcEEecCCChH-HHHHH
Confidence 78999999999999999994 88875
No 17
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.91 E-value=0.026 Score=58.25 Aligned_cols=28 Identities=43% Similarity=0.971 Sum_probs=25.2
Q ss_pred ccccccccccCceeEEEecCCcccccccc
Q 014396 393 EKVLCRVCFEGDISVVLLPCRHRILCRYD 421 (425)
Q Consensus 393 e~~~CkiC~~~~~~vv~lPC~H~~~C~~C 421 (425)
|..+|-||..+++++||-||+|.. |..|
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~S-C~~C 448 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHRS-CYGC 448 (489)
T ss_pred ccccCcceecccchhhccCCCCch-HHHH
Confidence 445999999999999999999998 8777
No 18
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=93.27 E-value=0.025 Score=59.11 Aligned_cols=29 Identities=34% Similarity=0.711 Sum_probs=25.7
Q ss_pred cccccccccCceeEEEecCCcccccccccC
Q 014396 394 KVLCRVCFEGDISVVLLPCRHRILCRYDHL 423 (425)
Q Consensus 394 ~~~CkiC~~~~~~vv~lPC~H~~~C~~Ca~ 423 (425)
-.+||||-|++.||=+=||||+. |..|-.
T Consensus 369 FeLCKICaendKdvkIEPCGHLl-Ct~CLa 397 (563)
T KOG1785|consen 369 FELCKICAENDKDVKIEPCGHLL-CTSCLA 397 (563)
T ss_pred HHHHHHhhccCCCcccccccchH-HHHHHH
Confidence 34799999999999999999997 888853
No 19
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=92.78 E-value=0.041 Score=40.45 Aligned_cols=25 Identities=32% Similarity=0.721 Sum_probs=14.1
Q ss_pred ccccccCcee----EEEecCCcccccccccC
Q 014396 397 CRVCFEGDIS----VVLLPCRHRILCRYDHL 423 (425)
Q Consensus 397 CkiC~~~~~~----vv~lPC~H~~~C~~Ca~ 423 (425)
|.||+| ..+ -+.|||||.. |.+|..
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~-c~~cl~ 29 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVF-CKDCLQ 29 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EE-EHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHH-HHHHHH
Confidence 677877 555 5789999998 888854
No 20
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=92.69 E-value=0.041 Score=38.68 Aligned_cols=26 Identities=42% Similarity=0.809 Sum_probs=22.9
Q ss_pred ccccccCceeEE-EecCCcccccccccC
Q 014396 397 CRVCFEGDISVV-LLPCRHRILCRYDHL 423 (425)
Q Consensus 397 CkiC~~~~~~vv-~lPC~H~~~C~~Ca~ 423 (425)
|.||++...+-+ ++||||.. |.+|..
T Consensus 1 C~iC~~~~~~~~~~~~C~H~f-C~~C~~ 27 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSF-CRDCLR 27 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEE-EHHHHH
T ss_pred CCcCCccccCCCEEecCCCcc-hHHHHH
Confidence 789999999998 99999995 988854
No 21
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.89 E-value=0.075 Score=55.84 Aligned_cols=35 Identities=31% Similarity=0.721 Sum_probs=28.0
Q ss_pred HHhhhccccccccccCcee---EEEecCCcccccccccC
Q 014396 388 ERLQNEKVLCRVCFEGDIS---VVLLPCRHRILCRYDHL 423 (425)
Q Consensus 388 ~~l~~e~~~CkiC~~~~~~---vv~lPC~H~~~C~~Ca~ 423 (425)
+...+..-.|-|||+.... ++++||+|+. |..|..
T Consensus 178 ~~F~~slf~C~ICf~e~~G~~c~~~lpC~Hv~-Ck~C~k 215 (445)
T KOG1814|consen 178 EKFVNSLFDCCICFEEQMGQHCFKFLPCSHVF-CKSCLK 215 (445)
T ss_pred HHHHhhcccceeeehhhcCcceeeecccchHH-HHHHHH
Confidence 4455555679999998754 9999999987 999964
No 22
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=89.93 E-value=0.098 Score=37.89 Aligned_cols=27 Identities=30% Similarity=0.588 Sum_probs=22.0
Q ss_pred ccccccCc---eeEEEecCCcccccccccCC
Q 014396 397 CRVCFEGD---ISVVLLPCRHRILCRYDHLT 424 (425)
Q Consensus 397 CkiC~~~~---~~vv~lPC~H~~~C~~Ca~~ 424 (425)
|.+|+++- ...++++|||.. |.+|..+
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~~-C~~C~~~ 31 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHIF-CEKCLKK 31 (44)
T ss_pred CcCcCccccCCCCeEEcccCCHH-HHHHHHh
Confidence 77787765 568999999997 9999754
No 23
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=89.33 E-value=0.15 Score=39.60 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=23.7
Q ss_pred ccccccccCceeEEEecCCccccccccc
Q 014396 395 VLCRVCFEGDISVVLLPCRHRILCRYDH 422 (425)
Q Consensus 395 ~~CkiC~~~~~~vv~lPC~H~~~C~~Ca 422 (425)
..|..|......=+++||||++ |..|-
T Consensus 8 ~~~~~~~~~~~~~~~~pCgH~I-~~~~f 34 (55)
T PF14447_consen 8 QPCVFCGFVGTKGTVLPCGHLI-CDNCF 34 (55)
T ss_pred eeEEEcccccccccccccccee-ecccc
Confidence 4799999999999999999999 87773
No 24
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=88.38 E-value=0.21 Score=36.17 Aligned_cols=25 Identities=36% Similarity=0.760 Sum_probs=20.6
Q ss_pred ccccccCceeEEEecCCccccccccc
Q 014396 397 CRVCFEGDISVVLLPCRHRILCRYDH 422 (425)
Q Consensus 397 CkiC~~~~~~vv~lPC~H~~~C~~Ca 422 (425)
|-||+|-=.+=|-++|||.. |..|-
T Consensus 1 CpiC~~~~~~Pv~l~CGH~F-C~~Cl 25 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSF-CRSCL 25 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEE-EHHHH
T ss_pred CCccchhhCCccccCCcCHH-HHHHH
Confidence 78999999999999999998 88874
No 25
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=87.39 E-value=0.18 Score=56.29 Aligned_cols=38 Identities=24% Similarity=0.422 Sum_probs=31.1
Q ss_pred cHHHHHHhhhccccccccccCceeEEEecCCccccccccc
Q 014396 383 SRQEFERLQNEKVLCRVCFEGDISVVLLPCRHRILCRYDH 422 (425)
Q Consensus 383 ~~~e~~~l~~e~~~CkiC~~~~~~vv~lPC~H~~~C~~Ca 422 (425)
.++|+++.+ +...|.+|.++..|+|+.-|||+. |.+|-
T Consensus 633 L~EElk~yK-~~LkCs~Cn~R~Kd~vI~kC~H~F-C~~Cv 670 (698)
T KOG0978|consen 633 LAEELKEYK-ELLKCSVCNTRWKDAVITKCGHVF-CEECV 670 (698)
T ss_pred HHHHHHHHH-hceeCCCccCchhhHHHHhcchHH-HHHHH
Confidence 355656555 456899999999999999999998 88884
No 26
>PHA02929 N1R/p28-like protein; Provisional
Probab=86.90 E-value=0.28 Score=48.33 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=20.3
Q ss_pred ccccccccCcee--------EEEecCCccccccccc
Q 014396 395 VLCRVCFEGDIS--------VVLLPCRHRILCRYDH 422 (425)
Q Consensus 395 ~~CkiC~~~~~~--------vv~lPC~H~~~C~~Ca 422 (425)
..|.||++.-.+ .++.||||.. |.+|-
T Consensus 175 ~eC~ICle~~~~~~~~~~~~~vl~~C~H~F-C~~CI 209 (238)
T PHA02929 175 KECAICMEKVYDKEIKNMYFGILSNCNHVF-CIECI 209 (238)
T ss_pred CCCccCCcccccCccccccceecCCCCCcc-cHHHH
Confidence 479999996332 4677899975 88884
No 27
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=86.69 E-value=0.28 Score=33.56 Aligned_cols=26 Identities=42% Similarity=0.796 Sum_probs=19.2
Q ss_pred cccccccCceeEE-EecCCccccccccc
Q 014396 396 LCRVCFEGDISVV-LLPCRHRILCRYDH 422 (425)
Q Consensus 396 ~CkiC~~~~~~vv-~lPC~H~~~C~~Ca 422 (425)
.|.||++.-.+.+ +.||||.. |.+|.
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~-c~~C~ 27 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVF-CRSCI 27 (45)
T ss_pred CCCcCchhhhCceEecCCCChh-cHHHH
Confidence 4899999874444 45599996 77775
No 28
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=83.70 E-value=0.2 Score=51.82 Aligned_cols=31 Identities=26% Similarity=0.639 Sum_probs=26.9
Q ss_pred ccccccccccCceeEEEecCCcccccccccCC
Q 014396 393 EKVLCRVCFEGDISVVLLPCRHRILCRYDHLT 424 (425)
Q Consensus 393 e~~~CkiC~~~~~~vv~lPC~H~~~C~~Ca~~ 424 (425)
|+..|.||-+.-.=+..+||+|.. |--||.+
T Consensus 60 en~~C~ICA~~~TYs~~~PC~H~~-CH~Ca~R 90 (493)
T COG5236 60 ENMNCQICAGSTTYSARYPCGHQI-CHACAVR 90 (493)
T ss_pred ccceeEEecCCceEEEeccCCchH-HHHHHHH
Confidence 345899999999999999999998 8888754
No 29
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=82.19 E-value=0.6 Score=33.43 Aligned_cols=26 Identities=38% Similarity=0.616 Sum_probs=21.3
Q ss_pred cccccccCc---eeEEEecCCccccccccc
Q 014396 396 LCRVCFEGD---ISVVLLPCRHRILCRYDH 422 (425)
Q Consensus 396 ~CkiC~~~~---~~vv~lPC~H~~~C~~Ca 422 (425)
.|.||++.- ..++.+||||.. |.+|.
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~f-h~~Ci 30 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVF-HRSCI 30 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEE-EHHHH
T ss_pred CCcCCChhhcCCCeEEEccCCCee-CHHHH
Confidence 599998864 589999999976 77774
No 30
>PHA02926 zinc finger-like protein; Provisional
Probab=74.81 E-value=1.2 Score=43.86 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=20.9
Q ss_pred ccccccccCce---------eEEEecCCccccccccc
Q 014396 395 VLCRVCFEGDI---------SVVLLPCRHRILCRYDH 422 (425)
Q Consensus 395 ~~CkiC~~~~~---------~vv~lPC~H~~~C~~Ca 422 (425)
..|.||||... --++.||+|.- |..|-
T Consensus 171 ~eCgICmE~I~eK~~~~eRrFGIL~~CnHsF-Cl~CI 206 (242)
T PHA02926 171 KECGICYEVVYSKRLENDRYFGLLDSCNHIF-CITCI 206 (242)
T ss_pred CCCccCccccccccccccccccccCCCCchH-HHHHH
Confidence 38999998732 24889999995 88873
No 31
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.47 E-value=1.4 Score=43.39 Aligned_cols=26 Identities=23% Similarity=0.508 Sum_probs=22.8
Q ss_pred ccccccccCceeEEEecCCcccccccc
Q 014396 395 VLCRVCFEGDISVVLLPCRHRILCRYD 421 (425)
Q Consensus 395 ~~CkiC~~~~~~vv~lPC~H~~~C~~C 421 (425)
-.|-||+|...|-|+=+|||+- |=.|
T Consensus 48 FdCNICLd~akdPVvTlCGHLF-CWpC 73 (230)
T KOG0823|consen 48 FDCNICLDLAKDPVVTLCGHLF-CWPC 73 (230)
T ss_pred eeeeeeccccCCCEEeecccce-ehHH
Confidence 3599999999999999999997 6555
No 32
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=68.02 E-value=2.2 Score=44.84 Aligned_cols=28 Identities=32% Similarity=0.685 Sum_probs=19.6
Q ss_pred HHhhhccccccccccCcee-------------EEEecCCcc
Q 014396 388 ERLQNEKVLCRVCFEGDIS-------------VVLLPCRHR 415 (425)
Q Consensus 388 ~~l~~e~~~CkiC~~~~~~-------------vv~lPC~H~ 415 (425)
|++.+++..|.||||+-+. ===+||||.
T Consensus 281 eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHi 321 (491)
T COG5243 281 EQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHI 321 (491)
T ss_pred hhhcCCCCeEEEecccccCCCCccCcccccCCcccccccce
Confidence 4556666799999998111 124899996
No 33
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=67.33 E-value=2.3 Score=32.06 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=21.7
Q ss_pred cccccccCceeEEEecCCcccccccc
Q 014396 396 LCRVCFEGDISVVLLPCRHRILCRYD 421 (425)
Q Consensus 396 ~CkiC~~~~~~vv~lPC~H~~~C~~C 421 (425)
.|.||++--.|=|..||||.. |.+|
T Consensus 3 ~Cpi~~~~~~~Pv~~~~G~v~-~~~~ 27 (63)
T smart00504 3 LCPISLEVMKDPVILPSGQTY-ERRA 27 (63)
T ss_pred CCcCCCCcCCCCEECCCCCEE-eHHH
Confidence 699999998899999999987 6665
No 34
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=61.67 E-value=2.1 Score=43.34 Aligned_cols=26 Identities=27% Similarity=0.609 Sum_probs=23.1
Q ss_pred ccccccccCceeEEEecCCcccccccc
Q 014396 395 VLCRVCFEGDISVVLLPCRHRILCRYD 421 (425)
Q Consensus 395 ~~CkiC~~~~~~vv~lPC~H~~~C~~C 421 (425)
.+|.+|+|+..|=-.-||||.- |=.|
T Consensus 240 ~kC~LCLe~~~~pSaTpCGHiF-CWsC 265 (293)
T KOG0317|consen 240 RKCSLCLENRSNPSATPCGHIF-CWSC 265 (293)
T ss_pred CceEEEecCCCCCCcCcCcchH-HHHH
Confidence 5899999999999999999997 6555
No 35
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.64 E-value=2 Score=40.82 Aligned_cols=28 Identities=21% Similarity=0.452 Sum_probs=22.6
Q ss_pred ccccccccCceeEE--EecCCcccccccccC
Q 014396 395 VLCRVCFEGDISVV--LLPCRHRILCRYDHL 423 (425)
Q Consensus 395 ~~CkiC~~~~~~vv--~lPC~H~~~C~~Ca~ 423 (425)
-.|-|||+....-+ ---|||+. |.+|..
T Consensus 132 ~~CPiCl~~~sek~~vsTkCGHvF-C~~Cik 161 (187)
T KOG0320|consen 132 YKCPICLDSVSEKVPVSTKCGHVF-CSQCIK 161 (187)
T ss_pred cCCCceecchhhccccccccchhH-HHHHHH
Confidence 36999999877666 36999998 999964
No 36
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.23 E-value=2.3 Score=42.62 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=22.5
Q ss_pred ccccccccCceeEEEecCCcccccccc
Q 014396 395 VLCRVCFEGDISVVLLPCRHRILCRYD 421 (425)
Q Consensus 395 ~~CkiC~~~~~~vv~lPC~H~~~C~~C 421 (425)
..|.+|++..-+-+..||||+- |-.|
T Consensus 216 ~kC~lC~e~~~~ps~t~CgHlF-C~~C 241 (271)
T COG5574 216 YKCFLCLEEPEVPSCTPCGHLF-CLSC 241 (271)
T ss_pred cceeeeecccCCcccccccchh-hHHH
Confidence 3699999999999999999997 4444
No 37
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.68 E-value=5.3 Score=43.40 Aligned_cols=27 Identities=26% Similarity=0.528 Sum_probs=23.6
Q ss_pred cccccccccCceeEEEecCCcccccccc
Q 014396 394 KVLCRVCFEGDISVVLLPCRHRILCRYD 421 (425)
Q Consensus 394 ~~~CkiC~~~~~~vv~lPC~H~~~C~~C 421 (425)
...|-||++.+.-.+..-|||.- |-.|
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiF-C~~C 212 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIF-CGPC 212 (513)
T ss_pred CCcCCcccCCCCcccccccCcee-eHHH
Confidence 34899999999999999999998 5556
No 38
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=51.67 E-value=19 Score=29.72 Aligned_cols=30 Identities=23% Similarity=0.352 Sum_probs=22.5
Q ss_pred cccccccccCc--eeEEEecCCcccccccccCC
Q 014396 394 KVLCRVCFEGD--ISVVLLPCRHRILCRYDHLT 424 (425)
Q Consensus 394 ~~~CkiC~~~~--~~vv~lPC~H~~~C~~Ca~~ 424 (425)
...|.+|..+= ...+..||||.+ -..|+.+
T Consensus 78 ~~~C~vC~k~l~~~~f~~~p~~~v~-H~~C~~r 109 (109)
T PF10367_consen 78 STKCSVCGKPLGNSVFVVFPCGHVV-HYSCIKR 109 (109)
T ss_pred CCCccCcCCcCCCceEEEeCCCeEE-ecccccC
Confidence 45799998753 457778999887 7888653
No 39
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.89 E-value=6.9 Score=41.49 Aligned_cols=63 Identities=24% Similarity=0.403 Sum_probs=39.0
Q ss_pred CCCcchhhccCchhhhHHHHHHHHhhccCcccccccHHHHHHhhhccccccccccCceeEEEecCCcccccccc
Q 014396 348 GYPPEVVKKMPKKELAEEVWRLQAALGQQSEITNYSRQEFERLQNEKVLCRVCFEGDISVVLLPCRHRILCRYD 421 (425)
Q Consensus 348 ~~~p~~V~~~~~~e~vqe~~r~~~~l~eq~~~~~~~~~e~~~l~~e~~~CkiC~~~~~~vv~lPC~H~~~C~~C 421 (425)
++|++..+.-++++..|-... +++..-...+++. ..| -.|-||+..--+-|-.||||-. |..|
T Consensus 48 ~~p~~~~~~~~~~~~~e~~~~------~~~~~~~s~~~~~---~se-f~c~vc~~~l~~pv~tpcghs~-c~~C 110 (398)
T KOG4159|consen 48 GVPNRCINEDPGKSSEETMAD------STPKALLSGPEEI---RSE-FECCVCSRALYPPVVTPCGHSF-CLEC 110 (398)
T ss_pred cCCHHHHhcccchhhhhhhhh------hhhhhhhccCccc---cch-hhhhhhHhhcCCCccccccccc-cHHH
Confidence 678888777777765442222 1111111122222 333 3699999998888888999987 8877
No 40
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.30 E-value=15 Score=37.32 Aligned_cols=33 Identities=27% Similarity=0.415 Sum_probs=24.1
Q ss_pred hhhccccccccccCce-eEEEecCCcccccccccC
Q 014396 390 LQNEKVLCRVCFEGDI-SVVLLPCRHRILCRYDHL 423 (425)
Q Consensus 390 l~~e~~~CkiC~~~~~-~vv~lPC~H~~~C~~Ca~ 423 (425)
......+|.+|-+.+. -.+..||||.- |-.|..
T Consensus 235 ~~t~~~~C~~Cg~~PtiP~~~~~C~Hiy-CY~Ci~ 268 (298)
T KOG2879|consen 235 TGTSDTECPVCGEPPTIPHVIGKCGHIY-CYYCIA 268 (298)
T ss_pred cccCCceeeccCCCCCCCeeecccccee-ehhhhh
Confidence 3334568999998765 47888899964 777753
No 41
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.88 E-value=17 Score=39.74 Aligned_cols=31 Identities=32% Similarity=0.457 Sum_probs=24.2
Q ss_pred hhhccccccccccCcee-----EEEecCCcccccccc
Q 014396 390 LQNEKVLCRVCFEGDIS-----VVLLPCRHRILCRYD 421 (425)
Q Consensus 390 l~~e~~~CkiC~~~~~~-----vv~lPC~H~~~C~~C 421 (425)
+.+....|.||.|.-.+ .-.+||||.. |..|
T Consensus 287 ~~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hif-h~~C 322 (543)
T KOG0802|consen 287 LALSDELCIICLEELHSGHNITPKRLPCGHIF-HDSC 322 (543)
T ss_pred hhhcCCeeeeechhhccccccccceeecccch-HHHH
Confidence 33334489999999988 7999999986 5555
No 42
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=37.58 E-value=18 Score=37.46 Aligned_cols=29 Identities=7% Similarity=-0.235 Sum_probs=27.0
Q ss_pred ccccccccCceeEEEecCCcccccccccC
Q 014396 395 VLCRVCFEGDISVVLLPCRHRILCRYDHL 423 (425)
Q Consensus 395 ~~CkiC~~~~~~vv~lPC~H~~~C~~Ca~ 423 (425)
..|-+|-++-....+.||+|-.-|.+||.
T Consensus 344 ~~~~~~~~~~~st~~~~~~~n~~~~~~a~ 372 (394)
T KOG2113|consen 344 LKGTSAGFGLLSTIWSGGNMNLSPGSLAS 372 (394)
T ss_pred cccccccCceeeeEeecCCcccChhhhhh
Confidence 37999999999999999999999999985
No 43
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=36.43 E-value=6.8 Score=38.14 Aligned_cols=27 Identities=30% Similarity=0.652 Sum_probs=24.9
Q ss_pred cccccccCceeEEEecCCcccccccccC
Q 014396 396 LCRVCFEGDISVVLLPCRHRILCRYDHL 423 (425)
Q Consensus 396 ~CkiC~~~~~~vv~lPC~H~~~C~~Ca~ 423 (425)
.|-||.+.-.+-|.-.|||.. |+.||.
T Consensus 198 ~C~iCKkdy~spvvt~CGH~F-C~~Cai 224 (259)
T COG5152 198 LCGICKKDYESPVVTECGHSF-CSLCAI 224 (259)
T ss_pred eehhchhhccchhhhhcchhH-HHHHHH
Confidence 699999999999999999998 999975
No 44
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.29 E-value=16 Score=36.66 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=25.4
Q ss_pred ccccccccccCc----eeEEEecCCcccccccccCCC
Q 014396 393 EKVLCRVCFEGD----ISVVLLPCRHRILCRYDHLTL 425 (425)
Q Consensus 393 e~~~CkiC~~~~----~~vv~lPC~H~~~C~~Ca~~l 425 (425)
++-.|.+|.|.- ..+|+-||||++ |.+|+.++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv-~~ecvEkl 255 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVV-TKECVEKL 255 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEe-eHHHHHHh
Confidence 455799999864 457899999998 99997653
No 45
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=26.09 E-value=22 Score=37.76 Aligned_cols=14 Identities=29% Similarity=0.546 Sum_probs=0.0
Q ss_pred CceeEEEecCCccc
Q 014396 403 GDISVVLLPCRHRI 416 (425)
Q Consensus 403 ~~~~vv~lPC~H~~ 416 (425)
...+.+|.||||++
T Consensus 356 ~~pthaF~PCGHv~ 369 (416)
T PF04710_consen 356 GPPTHAFNPCGHVC 369 (416)
T ss_dssp --------------
T ss_pred CCCceeeccccccc
Confidence 34678999999997
No 46
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=26.09 E-value=39 Score=35.13 Aligned_cols=31 Identities=10% Similarity=0.173 Sum_probs=28.1
Q ss_pred cccccccccCceeEEEecCCcccccccccCC
Q 014396 394 KVLCRVCFEGDISVVLLPCRHRILCRYDHLT 424 (425)
Q Consensus 394 ~~~CkiC~~~~~~vv~lPC~H~~~C~~Ca~~ 424 (425)
...|.+|++++.=+-.+||||-+-|.+|+..
T Consensus 136 ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~ 166 (394)
T KOG2113|consen 136 TIKRIQQFTNTYIATPVRCGEPVFCVTGAPK 166 (394)
T ss_pred ccchheecccceEeeeccCCCceEEEecCCc
Confidence 4579999999999999999999999999764
No 47
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.31 E-value=46 Score=34.52 Aligned_cols=23 Identities=39% Similarity=0.910 Sum_probs=17.6
Q ss_pred ccccccccccCce---eEEEecCCcc
Q 014396 393 EKVLCRVCFEGDI---SVVLLPCRHR 415 (425)
Q Consensus 393 e~~~CkiC~~~~~---~vv~lPC~H~ 415 (425)
.-..|.|||++-+ -++.+||.|.
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~ 347 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHR 347 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCce
Confidence 3457999998532 3789999996
No 48
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=24.06 E-value=48 Score=24.73 Aligned_cols=18 Identities=33% Similarity=1.082 Sum_probs=14.5
Q ss_pred ccccccc--CceeEEEecCC
Q 014396 396 LCRVCFE--GDISVVLLPCR 413 (425)
Q Consensus 396 ~CkiC~~--~~~~vv~lPC~ 413 (425)
.|+||++ .+-+....||.
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~ 20 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCR 20 (49)
T ss_pred CccCCCCCCCCCCeeEeccc
Confidence 4999996 66677889995
No 49
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.45 E-value=45 Score=34.91 Aligned_cols=21 Identities=33% Similarity=0.975 Sum_probs=16.7
Q ss_pred cccccccC---ceeEEEecCCccc
Q 014396 396 LCRVCFEG---DISVVLLPCRHRI 416 (425)
Q Consensus 396 ~CkiC~~~---~~~vv~lPC~H~~ 416 (425)
.|.||+|. .--+..|||+|.-
T Consensus 231 ~CaIClEdY~~GdklRiLPC~H~F 254 (348)
T KOG4628|consen 231 TCAICLEDYEKGDKLRILPCSHKF 254 (348)
T ss_pred eEEEeecccccCCeeeEecCCCch
Confidence 79999985 3357789999973
Done!