Query 014396
Match_columns 425
No_of_seqs 274 out of 427
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 10:49:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014396.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014396hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t6p_A Baculoviral IAP repeat- 99.4 1.1E-13 3.8E-18 139.2 4.7 49 306-367 38-86 (345)
2 2yho_A E3 ubiquitin-protein li 98.6 1.5E-08 5.2E-13 81.1 3.1 43 382-425 7-49 (79)
3 2ea5_A Cell growth regulator w 98.5 1.1E-08 3.7E-13 79.8 -1.2 36 388-423 9-44 (68)
4 4ic3_A E3 ubiquitin-protein li 98.3 2.3E-07 7.8E-12 72.9 3.1 41 383-424 14-54 (74)
5 3mup_A Baculoviral IAP repeat- 98.3 1E-07 3.5E-12 83.1 0.9 54 306-372 52-105 (122)
6 3hl5_A Baculoviral IAP repeat- 98.3 2E-07 6.7E-12 77.8 2.0 50 305-367 43-92 (95)
7 2vje_B MDM4 protein; proto-onc 98.2 1.4E-07 4.7E-12 72.2 -0.5 31 394-424 7-39 (63)
8 3d9t_A Baculoviral IAP repeat- 98.2 4.2E-07 1.4E-11 76.1 1.3 49 306-367 46-94 (97)
9 2vje_A E3 ubiquitin-protein li 98.1 2.2E-07 7.7E-12 71.2 -0.6 30 395-424 9-40 (64)
10 1jd5_A DIAP1, apoptosis 1 inhi 98.1 4.1E-07 1.4E-11 79.5 0.9 50 306-368 58-107 (124)
11 2i3h_A Baculoviral IAP repeat- 98.1 6.1E-07 2.1E-11 79.3 1.7 50 306-368 80-129 (133)
12 2ecg_A Baculoviral IAP repeat- 98.1 6.9E-07 2.4E-11 70.1 0.9 39 384-423 16-54 (75)
13 1g73_C Inhibitors of apoptosis 97.9 1.8E-06 6.1E-11 75.1 1.3 51 305-368 57-107 (121)
14 2vm5_A Baculoviral IAP repeat- 97.8 2.3E-06 7.8E-11 72.8 -0.1 46 306-364 54-99 (106)
15 2qfa_A Baculoviral IAP repeat- 97.7 1.6E-05 5.6E-10 70.7 3.5 53 296-361 42-94 (142)
16 2poi_A Baculoviral IAP repeat- 97.2 0.00014 4.9E-09 60.4 2.2 32 306-338 53-84 (94)
17 3m1d_A Baculoviral IAP repeat- 97.1 9.7E-05 3.3E-09 60.4 1.0 32 306-338 44-75 (85)
18 1se0_A Apoptosis 1 inhibitor; 97.1 0.00012 4.1E-09 63.2 1.6 44 305-361 45-88 (116)
19 2qra_D XIAP, baculoviral IAP r 97.1 0.00019 6.5E-09 61.6 2.2 32 306-338 70-101 (111)
20 3siq_A Apoptosis 1 inhibitor; 96.9 0.00036 1.2E-08 61.8 2.6 33 305-338 67-99 (136)
21 1i4o_C X-linked IAP, baculovir 96.8 0.00035 1.2E-08 62.2 2.0 32 306-338 76-107 (141)
22 4ayc_A E3 ubiquitin-protein li 96.5 0.00096 3.3E-08 57.8 2.4 32 389-422 49-80 (138)
23 3fl2_A E3 ubiquitin-protein li 96.2 0.0025 8.5E-08 53.9 3.4 34 387-422 46-79 (124)
24 2ecn_A Ring finger protein 141 96.2 0.00049 1.7E-08 52.3 -1.0 26 395-422 16-41 (70)
25 2y1n_A E3 ubiquitin-protein li 96.0 0.0021 7.3E-08 65.7 1.9 27 395-422 333-359 (389)
26 2ysj_A Tripartite motif-contai 95.9 0.00066 2.3E-08 50.6 -1.6 32 389-422 16-47 (63)
27 1z6u_A NP95-like ring finger p 95.9 0.0019 6.4E-08 57.2 1.0 34 387-422 72-105 (150)
28 2ysl_A Tripartite motif-contai 95.9 0.00079 2.7E-08 51.3 -1.3 27 395-422 21-47 (73)
29 2ecj_A Tripartite motif-contai 95.8 0.00058 2E-08 49.7 -2.3 27 395-422 16-42 (58)
30 2d8t_A Dactylidin, ring finger 95.8 0.0025 8.5E-08 48.7 1.2 29 394-423 15-43 (71)
31 1bor_A Transcription factor PM 95.6 0.0021 7E-08 47.4 0.1 30 393-423 5-34 (56)
32 1chc_A Equine herpes virus-1 r 95.4 0.0041 1.4E-07 46.7 1.2 28 394-422 5-33 (68)
33 1jm7_A BRCA1, breast cancer ty 95.2 0.0042 1.4E-07 51.0 0.6 33 388-422 16-48 (112)
34 2djb_A Polycomb group ring fin 95.2 0.0022 7.7E-08 49.1 -1.1 32 389-422 11-43 (72)
35 2yur_A Retinoblastoma-binding 95.1 0.0027 9.1E-08 49.1 -0.7 32 389-422 11-43 (74)
36 2ecv_A Tripartite motif-contai 95.0 0.005 1.7E-07 47.6 0.5 27 395-422 20-46 (85)
37 2ecw_A Tripartite motif-contai 94.8 0.0073 2.5E-07 46.7 1.0 27 395-422 20-46 (85)
38 2csy_A Zinc finger protein 183 94.8 0.008 2.7E-07 46.9 1.2 28 394-422 15-42 (81)
39 2y43_A E3 ubiquitin-protein li 94.8 0.011 3.7E-07 47.9 2.0 35 386-422 15-50 (99)
40 2ct2_A Tripartite motif protei 94.8 0.0083 2.8E-07 47.0 1.2 27 395-422 16-46 (88)
41 2egp_A Tripartite motif-contai 94.5 0.0052 1.8E-07 47.3 -0.5 28 395-423 13-40 (79)
42 2ecm_A Ring finger and CHY zin 94.4 0.013 4.5E-07 41.9 1.5 27 395-422 6-36 (55)
43 3lrq_A E3 ubiquitin-protein li 94.3 0.014 4.7E-07 47.7 1.6 36 385-422 14-50 (100)
44 2ckl_A Polycomb group ring fin 94.3 0.012 4.2E-07 48.4 1.2 33 388-422 10-43 (108)
45 2kiz_A E3 ubiquitin-protein li 94.2 0.0074 2.5E-07 45.5 -0.3 27 395-422 15-44 (69)
46 1jm7_B BARD1, BRCA1-associated 94.1 0.017 5.8E-07 48.4 1.7 37 385-423 14-51 (117)
47 2ea6_A Ring finger protein 4; 93.8 0.01 3.5E-07 44.2 -0.2 28 394-422 15-49 (69)
48 2ect_A Ring finger protein 126 93.5 0.014 4.9E-07 44.9 0.1 27 395-422 16-45 (78)
49 2ecy_A TNF receptor-associated 93.4 0.0098 3.4E-07 44.6 -0.9 28 394-422 15-42 (66)
50 2xeu_A Ring finger protein 4; 93.3 0.015 5E-07 42.7 -0.1 27 395-422 4-37 (64)
51 3l11_A E3 ubiquitin-protein li 93.2 0.02 6.8E-07 47.6 0.7 28 395-423 16-43 (115)
52 3ng2_A RNF4, snurf, ring finge 93.1 0.015 5.1E-07 43.7 -0.3 27 395-422 11-44 (71)
53 2ep4_A Ring finger protein 24; 92.9 0.013 4.3E-07 44.8 -0.9 27 395-422 16-45 (74)
54 1iym_A EL5; ring-H2 finger, ub 92.9 0.032 1.1E-06 39.9 1.3 27 395-422 6-36 (55)
55 1g25_A CDK-activating kinase a 92.8 0.017 5.8E-07 43.1 -0.3 27 395-422 4-35 (65)
56 1x4j_A Ring finger protein 38; 92.7 0.04 1.4E-06 42.2 1.7 28 394-422 23-53 (75)
57 2ckl_B Ubiquitin ligase protei 92.6 0.033 1.1E-06 49.2 1.2 32 389-422 50-82 (165)
58 3ztg_A E3 ubiquitin-protein li 92.5 0.026 8.8E-07 44.8 0.3 27 395-422 14-41 (92)
59 1rmd_A RAG1; V(D)J recombinati 91.8 0.055 1.9E-06 44.9 1.6 31 390-422 20-50 (116)
60 2l0b_A E3 ubiquitin-protein li 91.3 0.048 1.6E-06 43.7 0.7 27 395-422 41-70 (91)
61 1t1h_A Gspef-atpub14, armadill 91.3 0.062 2.1E-06 41.2 1.3 28 394-422 8-35 (78)
62 1e4u_A Transcriptional repress 91.1 0.016 5.4E-07 46.0 -2.3 27 395-422 12-42 (78)
63 3hct_A TNF receptor-associated 90.7 0.075 2.6E-06 44.4 1.3 27 395-422 19-45 (118)
64 1wim_A KIAA0161 protein; ring 87.8 0.094 3.2E-06 42.1 -0.2 28 394-422 5-35 (94)
65 3knv_A TNF receptor-associated 86.1 0.24 8.1E-06 43.2 1.4 28 394-422 31-58 (141)
66 1v87_A Deltex protein 2; ring- 82.3 0.46 1.6E-05 38.9 1.5 26 396-422 27-70 (114)
67 2kre_A Ubiquitin conjugation f 78.0 0.33 1.1E-05 40.0 -0.8 27 394-421 29-55 (100)
68 2kr4_A Ubiquitin conjugation f 77.6 0.35 1.2E-05 38.4 -0.7 30 390-421 11-40 (85)
69 4ap4_A E3 ubiquitin ligase RNF 76.7 0.49 1.7E-05 39.0 -0.1 29 393-422 71-106 (133)
70 2c2l_A CHIP, carboxy terminus 73.7 1.1 3.9E-05 41.5 1.6 27 394-421 208-234 (281)
71 2ecl_A Ring-box protein 2; RNF 72.0 1.1 3.8E-05 34.9 0.9 25 396-421 17-56 (81)
72 2yu4_A E3 SUMO-protein ligase 67.5 2 6.7E-05 34.5 1.5 27 394-421 7-34 (94)
73 1wgm_A Ubiquitin conjugation f 65.9 2 6.7E-05 35.1 1.2 26 395-421 23-49 (98)
74 3dpl_R Ring-box protein 1; ubi 56.1 4.4 0.00015 33.6 1.6 25 396-421 39-81 (106)
75 2jun_A Midline-1; B-BOX, TRIM, 52.0 3.2 0.00011 33.2 0.1 28 394-422 3-33 (101)
76 2d8s_A Cellular modulator of i 51.7 5.4 0.00018 31.4 1.4 26 395-421 16-48 (80)
77 2f42_A STIP1 homology and U-bo 51.4 5 0.00017 36.6 1.4 27 394-421 106-132 (179)
78 1vyx_A ORF K3, K3RING; zinc-bi 45.5 3.8 0.00013 30.6 -0.3 20 395-414 7-26 (60)
79 4a0k_B E3 ubiquitin-protein li 32.0 9.9 0.00034 32.2 0.1 26 396-422 50-93 (117)
80 2zet_C Melanophilin; complex, 31.3 24 0.00084 31.2 2.5 29 394-423 68-101 (153)
81 1zbd_B Rabphilin-3A; G protein 27.5 25 0.00086 30.5 1.9 31 392-423 53-88 (134)
No 1
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=99.40 E-value=1.1e-13 Score=139.20 Aligned_cols=49 Identities=18% Similarity=0.369 Sum_probs=44.7
Q ss_pred cccccccccCccccccccCCCCChHHHhhhhhcCCCCCccccCCCcchhhccCchhhhHHHH
Q 014396 306 HDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVW 367 (425)
Q Consensus 306 ~~~~~~~~~~~~l~~~W~~~~~~~ee~ar~~~~~~~~~~~~c~~~p~~V~~~~~~e~vqe~~ 367 (425)
.|-+.=.+||+.|.+ |+++||||+||+||+|. | .+|+.+||+||+++++
T Consensus 38 ~D~v~Cf~C~~~l~~-We~~DdP~~eH~~~~p~--------C----~f~~~~kg~~~i~~~~ 86 (345)
T 3t6p_A 38 NDDVKCFSCDGGLRC-WESGDDPWVEHAKWFPR--------C----EFLIRMKGQEFVDEIQ 86 (345)
T ss_dssp TTCEEETTTCCEECC-CCTTCCHHHHHHHHCTT--------C----HHHHHHHCHHHHHHHH
T ss_pred CCeEEecCCCCCccC-CCCCCCHHHHHHHhCCC--------C----ccHHHhccHHHHHHHH
Confidence 788888999999999 99999999999999999 9 8888999999887655
No 2
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.61 E-value=1.5e-08 Score=81.09 Aligned_cols=43 Identities=28% Similarity=0.647 Sum_probs=36.8
Q ss_pred ccHHHHHHhhhccccccccccCceeEEEecCCcccccccccCCC
Q 014396 382 YSRQEFERLQNEKVLCRVCFEGDISVVLLPCRHRILCRYDHLTL 425 (425)
Q Consensus 382 ~~~~e~~~l~~e~~~CkiC~~~~~~vv~lPC~H~~~C~~Ca~~l 425 (425)
..+++.++++++. .|+||+++..++|++||||.+.|.+|+.++
T Consensus 7 ~l~~~~~~l~~~~-~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~ 49 (79)
T 2yho_A 7 VLQEKLRKLKEAM-LCMVCCEEEINSTFCPCGHTVCCESCAAQL 49 (79)
T ss_dssp THHHHHHHHHHHT-BCTTTSSSBCCEEEETTCBCCBCHHHHTTC
T ss_pred HHHHHHHcCCCCC-EeEEeCcccCcEEEECCCCHHHHHHHHHhc
Confidence 3456777788775 999999999999999999999999998753
No 3
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=1.1e-08 Score=79.80 Aligned_cols=36 Identities=39% Similarity=0.676 Sum_probs=30.9
Q ss_pred HHhhhccccccccccCceeEEEecCCcccccccccC
Q 014396 388 ERLQNEKVLCRVCFEGDISVVLLPCRHRILCRYDHL 423 (425)
Q Consensus 388 ~~l~~e~~~CkiC~~~~~~vv~lPC~H~~~C~~Ca~ 423 (425)
+.++++...|+||+++++++|++||||.+.|..|+.
T Consensus 9 e~~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~ 44 (68)
T 2ea5_A 9 EPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVK 44 (68)
T ss_dssp CCSCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHH
T ss_pred cccCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHh
Confidence 344455568999999999999999999999999975
No 4
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.32 E-value=2.3e-07 Score=72.87 Aligned_cols=41 Identities=34% Similarity=0.898 Sum_probs=34.5
Q ss_pred cHHHHHHhhhccccccccccCceeEEEecCCcccccccccCC
Q 014396 383 SRQEFERLQNEKVLCRVCFEGDISVVLLPCRHRILCRYDHLT 424 (425)
Q Consensus 383 ~~~e~~~l~~e~~~CkiC~~~~~~vv~lPC~H~~~C~~Ca~~ 424 (425)
.+++.++++++. .|.||++...+.|++||||.+.|..|+.+
T Consensus 14 ~~~~~~~~~~~~-~C~iC~~~~~~~~~~pCgH~~~C~~C~~~ 54 (74)
T 4ic3_A 14 TEEQLRRLQEEK-LCKICMDRNIAIVFVPCGHLVTCKQCAEA 54 (74)
T ss_dssp HHHHHHHHHHHT-BCTTTSSSBCCEEEETTCCBCCCHHHHTT
T ss_pred HHHHHhcCccCC-CCCCCCCCCCCEEEcCCCChhHHHHhhhc
Confidence 445566677664 89999999999999999999889999764
No 5
>3mup_A Baculoviral IAP repeat-containing protein 2; zinc-finger motif, apoptosis inhibitor; HET: SMK; 2.60A {Homo sapiens} SCOP: g.52.1.1 PDB: 3oz1_A* 4eb9_A*
Probab=98.31 E-value=1e-07 Score=83.10 Aligned_cols=54 Identities=17% Similarity=0.295 Sum_probs=48.0
Q ss_pred cccccccccCccccccccCCCCChHHHhhhhhcCCCCCccccCCCcchhhccCchhhhHHHHHHHHh
Q 014396 306 HDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAA 372 (425)
Q Consensus 306 ~~~~~~~~~~~~l~~~W~~~~~~~ee~ar~~~~~~~~~~~~c~~~p~~V~~~~~~e~vqe~~r~~~~ 372 (425)
.|-+.=.+||..|.+ |+++||||+||+|++|+ | .+|+.+||+||+++++...+.
T Consensus 52 ~D~V~Cf~C~~~L~~-We~~DdP~~EH~r~~P~--------C----~Fv~~~kg~~fi~~i~~~~~~ 105 (122)
T 3mup_A 52 NDDVKCFCCDGGLRC-WESGDDPWVEHAKWFPR--------C----EFLIRMKGQEFVDEIQGRYPH 105 (122)
T ss_dssp TTCEEETTTCCEECC-CCTTCCHHHHHHHHCTT--------C----HHHHHHHCHHHHHHHHHHCTT
T ss_pred CCeEEecCcCCEecC-CCCCCCHHHHHHHHCcC--------C----cchhhcCcHHHHHHHHHhchh
Confidence 577777899999999 99999999999999999 9 899999999999988764443
No 6
>3hl5_A Baculoviral IAP repeat-containing protein 4; BIR, apoptosis, small molecule drug discovery, structur drug design, ligase, metal-binding; HET: 9JZ; 1.80A {Homo sapiens} PDB: 1nw9_A 2vsl_A
Probab=98.29 E-value=2e-07 Score=77.83 Aligned_cols=50 Identities=20% Similarity=0.357 Sum_probs=45.8
Q ss_pred ccccccccccCccccccccCCCCChHHHhhhhhcCCCCCccccCCCcchhhccCchhhhHHHH
Q 014396 305 AHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVW 367 (425)
Q Consensus 305 ~~~~~~~~~~~~~l~~~W~~~~~~~ee~ar~~~~~~~~~~~~c~~~p~~V~~~~~~e~vqe~~ 367 (425)
..|-+.=.+|+..|.+ |+++||||+||+|++|+ | .+|+.+||+||+++++
T Consensus 43 ~~D~v~Cf~C~~~l~~-We~~DdP~~eH~r~~p~--------C----~f~~~~kg~~fv~~i~ 92 (95)
T 3hl5_A 43 EGDKVKCFHCGGGLTD-WKPSEDPWEQHAKWYPG--------C----KYLLEQKGQEYINNIH 92 (95)
T ss_dssp STTCEEETTTCCEECC-CCTTCCHHHHHHHHCTT--------C----HHHHHHTCHHHHHHHT
T ss_pred CCCeEEecCCCCCccC-cCCCCCHHHHHHHHCcC--------C----cchHhhccHHHHHHHH
Confidence 4688888899999999 99999999999999999 9 8999999999998764
No 7
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.21 E-value=1.4e-07 Score=72.21 Aligned_cols=31 Identities=13% Similarity=0.165 Sum_probs=27.6
Q ss_pred cccccccccCceeEEEe--cCCcccccccccCC
Q 014396 394 KVLCRVCFEGDISVVLL--PCRHRILCRYDHLT 424 (425)
Q Consensus 394 ~~~CkiC~~~~~~vv~l--PC~H~~~C~~Ca~~ 424 (425)
...|+||+|+++|.+++ ||||.+.|.+|+.+
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~ 39 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARR 39 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHH
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHH
Confidence 34799999999999888 99999999999854
No 8
>3d9t_A Baculoviral IAP repeat-containing protein 2; zinc finger, apoptosis, cytoplasm, metal-binding, polymorphism, zinc, zinc-finger, alternative splicing, hydrolase, protease; 1.50A {Homo sapiens} SCOP: g.52.1.1 PDB: 3d9u_A 3uw4_A* 2uvl_A
Probab=98.16 E-value=4.2e-07 Score=76.07 Aligned_cols=49 Identities=18% Similarity=0.361 Sum_probs=44.1
Q ss_pred cccccccccCccccccccCCCCChHHHhhhhhcCCCCCccccCCCcchhhccCchhhhHHHH
Q 014396 306 HDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVW 367 (425)
Q Consensus 306 ~~~~~~~~~~~~l~~~W~~~~~~~ee~ar~~~~~~~~~~~~c~~~p~~V~~~~~~e~vqe~~ 367 (425)
.|-+.=.+||..|.+ |+++||||+||+|++|+ | .+|+.+|+++++++++
T Consensus 46 ~D~v~Cf~C~~~l~~-We~~Ddp~~eH~r~~p~--------C----~f~~~~kg~~~v~~~~ 94 (97)
T 3d9t_A 46 NDDVKCFCCDGGLRC-WESGDDPWVEHAKWFPR--------C----EFLIRMKGQEFVDEIQ 94 (97)
T ss_dssp TTCEEETTTCCEEEC-CCTTCCHHHHHHHHCTT--------B----HHHHHHHCHHHHHHHT
T ss_pred CCEEEecCcCCEecC-CCCCCCHHHHHHHhCcc--------C----hhhHhhccHHHHHHHH
Confidence 466777789999999 99999999999999999 9 8999999999988764
No 9
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.14 E-value=2.2e-07 Score=71.24 Aligned_cols=30 Identities=13% Similarity=0.205 Sum_probs=27.4
Q ss_pred ccccccccCceeEEEe--cCCcccccccccCC
Q 014396 395 VLCRVCFEGDISVVLL--PCRHRILCRYDHLT 424 (425)
Q Consensus 395 ~~CkiC~~~~~~vv~l--PC~H~~~C~~Ca~~ 424 (425)
..|+||+|+.+|++++ ||||.+.|.+|+.+
T Consensus 9 ~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~ 40 (64)
T 2vje_A 9 EPCVICQGRPKNGCIVHGKTGHLMACFTCAKK 40 (64)
T ss_dssp SCCTTTSSSCSCEEEEETTEEEEEECHHHHHH
T ss_pred CCCCcCCCCCCCEEEECCCCCChhhHHHHHHH
Confidence 4799999999999999 99999999999753
No 10
>1jd5_A DIAP1, apoptosis 1 inhibitor; IAP, caspase activation; 1.90A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1jd4_A 1jd6_A 1q4q_A
Probab=98.14 E-value=4.1e-07 Score=79.52 Aligned_cols=50 Identities=22% Similarity=0.357 Sum_probs=46.1
Q ss_pred cccccccccCccccccccCCCCChHHHhhhhhcCCCCCccccCCCcchhhccCchhhhHHHHH
Q 014396 306 HDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVWR 368 (425)
Q Consensus 306 ~~~~~~~~~~~~l~~~W~~~~~~~ee~ar~~~~~~~~~~~~c~~~p~~V~~~~~~e~vqe~~r 368 (425)
.|-+.=.+||..|.+ |+++||||+||+||+|+ | .+|+.+|++++++++..
T Consensus 58 ~D~V~Cf~C~~~L~~-We~~DdP~~EH~r~~P~--------C----~Fv~~~kg~~fv~~v~~ 107 (124)
T 1jd5_A 58 GDRVRCFSCGGGLMD-WNDNDEPWEQHALWLSQ--------C----RFVKLMKGQLYIDTVAA 107 (124)
T ss_dssp TTCEEETTTCCEEEC-CCTTCCHHHHHHHHCTT--------C----HHHHHHHCHHHHHHHHH
T ss_pred CCEEEecCCCCEecC-CCCCCCHHHHHHHHCcC--------C----ceeecccchHHHHHHHh
Confidence 578888889999999 99999999999999999 9 89999999999987765
No 11
>2i3h_A Baculoviral IAP repeat-containing protein 7; zinc binding, peptide complex, apoptosis inhibition, peptidomimetic, small molecule, drug design, inhibitor/apoptosis complex; HET: BTB; 1.62A {Homo sapiens} SCOP: g.52.1.1 PDB: 2i3i_A* 3f7h_A* 3f7i_A* 3gt9_A* 3gta_A* 1tw6_A* 3uw5_A* 3f7g_A* 1oxn_A* 1oxq_A* 1oy7_A*
Probab=98.12 E-value=6.1e-07 Score=79.31 Aligned_cols=50 Identities=12% Similarity=0.256 Sum_probs=45.3
Q ss_pred cccccccccCccccccccCCCCChHHHhhhhhcCCCCCccccCCCcchhhccCchhhhHHHHH
Q 014396 306 HDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVWR 368 (425)
Q Consensus 306 ~~~~~~~~~~~~l~~~W~~~~~~~ee~ar~~~~~~~~~~~~c~~~p~~V~~~~~~e~vqe~~r 368 (425)
.|-+.=.+|+..|.+ |+++||||+||+||+|+ | .+|+.+||+||+|+++.
T Consensus 80 ~D~V~Cf~C~~~L~~-We~~DDP~~EH~r~~P~--------C----~Fv~~~Kg~~fv~~v~~ 129 (133)
T 2i3h_A 80 QDKVRCFFCYGGLQS-WKRGDDPWTEHAKWFPG--------C----QFLLRSKGQEYINNIHL 129 (133)
T ss_dssp TTCEEETTTCCEEEC-CCTTCCHHHHHHHHCTT--------C----HHHHHHHCHHHHHHHC-
T ss_pred CCEEEecccCCEeCC-CCCCCCHHHHHHHHCcC--------C----ceehhcccHHHHHHHhh
Confidence 677888889999999 99999999999999999 9 89999999999987753
No 12
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=6.9e-07 Score=70.08 Aligned_cols=39 Identities=36% Similarity=0.926 Sum_probs=32.1
Q ss_pred HHHHHHhhhccccccccccCceeEEEecCCcccccccccC
Q 014396 384 RQEFERLQNEKVLCRVCFEGDISVVLLPCRHRILCRYDHL 423 (425)
Q Consensus 384 ~~e~~~l~~e~~~CkiC~~~~~~vv~lPC~H~~~C~~Ca~ 423 (425)
+++.++++++. .|.||++...+.|++||||.+.|.+|..
T Consensus 16 ~~~~~~~~~~~-~C~IC~~~~~~~~~~pCgH~~~C~~C~~ 54 (75)
T 2ecg_A 16 EEQLRRLQEEK-LCKICMDRNIAIVFVPCGHLVTCKQCAE 54 (75)
T ss_dssp HHHHHHHHHHH-SCSSSCSSCCCBCCSSSCCCCBCHHHHH
T ss_pred HHHHHcCCCCC-CCCcCCCCCCCEEEecCCCHHHHHHHhh
Confidence 34455666554 8999999999999999999988999964
No 13
>1g73_C Inhibitors of apoptosis-like protein ILP; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: g.52.1.1 PDB: 3cm2_D* 3clx_D* 3cm7_C* 1f9x_A 1g3f_A 1tfq_A* 1tft_A* 3eyl_A* 3g76_A* 2jk7_A* 2opz_A 2opy_A* 1xb0_A 1xb1_A
Probab=97.95 E-value=1.8e-06 Score=75.10 Aligned_cols=51 Identities=20% Similarity=0.336 Sum_probs=45.2
Q ss_pred ccccccccccCccccccccCCCCChHHHhhhhhcCCCCCccccCCCcchhhccCchhhhHHHHH
Q 014396 305 AHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVWR 368 (425)
Q Consensus 305 ~~~~~~~~~~~~~l~~~W~~~~~~~ee~ar~~~~~~~~~~~~c~~~p~~V~~~~~~e~vqe~~r 368 (425)
..|-+.=.+||..|.+ |+.+||||+||+|++|+ | .+|+.+|+.++++++..
T Consensus 57 ~~D~V~Cf~C~~~L~~-We~~DdP~~eH~r~~P~--------C----~Fv~~~kg~~~v~~v~~ 107 (121)
T 1g73_C 57 EGDKVKCFHCGGGLTD-WKPSEDPWEQHAKWYPG--------C----KYLLEQKGQEYINNIHL 107 (121)
T ss_dssp STTCEEETTTCCEEES-CCTTCCHHHHHHHHCTT--------C----HHHHHHHHHHHHHHHTC
T ss_pred CCCEEEcCcCCCCcCC-CCCCCCHHHHHHHHCcC--------C----cchhhccchhhhccccc
Confidence 3677777789999999 99999999999999999 9 88999999999887653
No 14
>2vm5_A Baculoviral IAP repeat-containing protein 1; apoptosis; 1.80A {Homo sapiens}
Probab=97.83 E-value=2.3e-06 Score=72.80 Aligned_cols=46 Identities=17% Similarity=0.357 Sum_probs=41.1
Q ss_pred cccccccccCccccccccCCCCChHHHhhhhhcCCCCCccccCCCcchhhccCchhhhH
Q 014396 306 HDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAE 364 (425)
Q Consensus 306 ~~~~~~~~~~~~l~~~W~~~~~~~ee~ar~~~~~~~~~~~~c~~~p~~V~~~~~~e~vq 364 (425)
.|-+.=.+||..|.+ |+++||||+||+||+|+ | .+|+.+||.|+++
T Consensus 54 ~D~V~Cf~C~~~L~~-We~~DdP~~eH~r~~p~--------C----~Fv~~~Kg~~~i~ 99 (106)
T 2vm5_A 54 QDTVQCFSCGGCLGN-WEEGDDPWKEHAKWFPK--------C----EFLRSKKSSEEIT 99 (106)
T ss_dssp TTCEEETTTCCEEES-CCTTCCHHHHHHHHCTT--------C----HHHHHHHCCTTSC
T ss_pred CCEEEccccCCEecC-CCCCCCHHHHHHHHCcC--------C----cchhhccCHHHHH
Confidence 677888889999999 99999999999999999 9 8888888888653
No 15
>2qfa_A Baculoviral IAP repeat-containing protein 5; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens} SCOP: g.52.1.1 PDB: 1e31_A* 4a0i_A 4a0j_A* 4a0n_A* 2raw_A 3uec_A* 3ued_A* 3uef_A 3uig_A* 3uih_A 3uii_A 1f3h_A 3uee_A 3ueg_A* 3uei_A 3ueh_A* 3uik_A 3uij_A 1m4m_A 2rax_A ...
Probab=97.71 E-value=1.6e-05 Score=70.66 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=44.4
Q ss_pred cceEEEeccccccccccccCccccccccCCCCChHHHhhhhhcCCCCCccccCCCcchhhccCchh
Q 014396 296 GIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKE 361 (425)
Q Consensus 296 ~~~~~~~s~~~~~~~~~~~~~~l~~~W~~~~~~~ee~ar~~~~~~~~~~~~c~~~p~~V~~~~~~e 361 (425)
|-|+.=.....|-+.=.+||+.|.| |+++||||+||+|++|+ | .+|+..|+.+
T Consensus 42 GFyy~g~~~~~D~V~Cf~C~~~L~~-We~~DdP~~EH~r~~p~--------C----~F~~~~k~~~ 94 (142)
T 2qfa_A 42 GFIHCPTENEPDLAQCFFCFKELEG-WEPDDDPIEEHKKHSSG--------C----AFLSVKKQFE 94 (142)
T ss_dssp TEEECCBTTBTTCEEETTTCCEECC-CCTTCCHHHHHHHHCTT--------C----GGGGCCSCGG
T ss_pred CCCcCCCCCCCCEEEcCCCCCEecc-cCCCCCHHHHHHHHCcC--------C----cceecccccc
Confidence 4555555556788888899999999 99999999999999999 9 7888888765
No 16
>2poi_A Baculoviral IAP repeat-containing protein 4; zinc finger, signaling protein/apoptosis complex; 1.80A {Homo sapiens} PDB: 2pop_B
Probab=97.15 E-value=0.00014 Score=60.45 Aligned_cols=32 Identities=6% Similarity=0.162 Sum_probs=29.8
Q ss_pred cccccccccCccccccccCCCCChHHHhhhhhc
Q 014396 306 HDCFGFLHRGSRLLGWWSIDEGSREDQARLVHE 338 (425)
Q Consensus 306 ~~~~~~~~~~~~l~~~W~~~~~~~ee~ar~~~~ 338 (425)
.|-+.=.+||..|.+ |+.+||||+||+|++|+
T Consensus 53 ~D~V~Cf~C~~~l~~-We~~DdP~~eH~r~~P~ 84 (94)
T 2poi_A 53 GDTVRCFSCHAAVDR-WQYGDSAVGRHRKVSPN 84 (94)
T ss_dssp TTCEEETTTCCEECC-CCTTCCHHHHHHHHCTT
T ss_pred CCEEEcccCCCEeCC-CCCCCCHHHHHHHHCcc
Confidence 577888889999999 99999999999999999
No 17
>3m1d_A Baculoviral IAP repeat-containing protein 2; BIR, apoptosis, cytoplasm, polymorphism, zinc, zinc-FIN metal binding protein; 2.00A {Homo sapiens} PDB: 3m0a_D 3m0d_D
Probab=97.14 E-value=9.7e-05 Score=60.35 Aligned_cols=32 Identities=16% Similarity=0.291 Sum_probs=29.9
Q ss_pred cccccccccCccccccccCCCCChHHHhhhhhc
Q 014396 306 HDCFGFLHRGSRLLGWWSIDEGSREDQARLVHE 338 (425)
Q Consensus 306 ~~~~~~~~~~~~l~~~W~~~~~~~ee~ar~~~~ 338 (425)
.|-+.=.+||..|.+ |+.+||||+||+|++|+
T Consensus 44 ~D~v~Cf~C~~~l~~-We~~DdP~~eH~~~~p~ 75 (85)
T 3m1d_A 44 NDKVKCFCCGLMLDN-WKLGDSPIQKHKQLYPS 75 (85)
T ss_dssp TTCEEETTTCCEECS-CCTTCCHHHHHHHHCTT
T ss_pred CCEEEeCCcCCEecC-CCCCCCHHHHHHHHCcc
Confidence 577888899999999 99999999999999999
No 18
>1se0_A Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspase; 1.75A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1sdz_A 3sip_E
Probab=97.13 E-value=0.00012 Score=63.16 Aligned_cols=44 Identities=14% Similarity=0.358 Sum_probs=36.7
Q ss_pred ccccccccccCccccccccCCCCChHHHhhhhhcCCCCCccccCCCcchhhccCchh
Q 014396 305 AHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKE 361 (425)
Q Consensus 305 ~~~~~~~~~~~~~l~~~W~~~~~~~ee~ar~~~~~~~~~~~~c~~~p~~V~~~~~~e 361 (425)
..|-+.=.+||..|.+ |+.+||||+||+|++|+ | .+|+..+...
T Consensus 45 ~~D~V~Cf~C~~~L~~-We~~DdP~~eH~r~~p~--------C----~Fv~~~~~~n 88 (116)
T 1se0_A 45 AGDKVKCFFCGVEIGS-WEQEDQPVPEHQRWSPN--------C----PLLRRRTTNN 88 (116)
T ss_dssp STTCEEETTTCCEEES-CCTTCCHHHHHHHHCTT--------C----TTTTTCCCCC
T ss_pred CCCEEEecCcCCEecC-CCCCCCHHHHHHHHCcc--------C----cceeeeccCc
Confidence 4677777889999999 99999999999999999 9 6666655443
No 19
>2qra_D XIAP, baculoviral IAP repeat-containing protein 4, inhibitor; apoptosis, signaling protein, zinc binding; 2.50A {Homo sapiens}
Probab=97.07 E-value=0.00019 Score=61.55 Aligned_cols=32 Identities=6% Similarity=0.162 Sum_probs=29.9
Q ss_pred cccccccccCccccccccCCCCChHHHhhhhhc
Q 014396 306 HDCFGFLHRGSRLLGWWSIDEGSREDQARLVHE 338 (425)
Q Consensus 306 ~~~~~~~~~~~~l~~~W~~~~~~~ee~ar~~~~ 338 (425)
.|-+.=.+||..|.+ |+.+||||+||+|++|+
T Consensus 70 ~D~V~Cf~C~~~L~~-We~~DdP~~eH~r~sP~ 101 (111)
T 2qra_D 70 GDTVRCFSCHAAVDR-WQYGDSAVGRHRKVSPN 101 (111)
T ss_dssp TTCEEETTTCCEECC-CCTTCCHHHHHHHHCTT
T ss_pred CCEEEcccCCCEeCC-CCCCCCHHHHHHHHCcc
Confidence 577888889999999 99999999999999999
No 20
>3siq_A Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase; 2.40A {Drosophila melanogaster}
Probab=96.91 E-value=0.00036 Score=61.84 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=30.4
Q ss_pred ccccccccccCccccccccCCCCChHHHhhhhhc
Q 014396 305 AHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHE 338 (425)
Q Consensus 305 ~~~~~~~~~~~~~l~~~W~~~~~~~ee~ar~~~~ 338 (425)
..|-+.=.+||..|.+ |+++||||+||+|++|+
T Consensus 67 ~~D~V~Cf~C~~~L~~-We~~DdP~~EH~r~sP~ 99 (136)
T 3siq_A 67 AGDKVKCFFCGVEIGS-WEQEDQPVPEHQRWSPN 99 (136)
T ss_dssp STTCEEETTTCCEEEC-CCTTCCHHHHHHHHCTT
T ss_pred CCCeEEEeccCCEecC-CCCCCCHHHHHHHHCcC
Confidence 4677888889999999 99999999999999999
No 21
>1i4o_C X-linked IAP, baculoviral IAP repeat-containing protein 4; protease-inhibitor, apoptosis-hydrolase complex; 2.40A {Homo sapiens} PDB: 1kmc_C 1i51_E 1i3o_E 1c9q_A
Probab=96.84 E-value=0.00035 Score=62.18 Aligned_cols=32 Identities=16% Similarity=0.269 Sum_probs=30.0
Q ss_pred cccccccccCccccccccCCCCChHHHhhhhhc
Q 014396 306 HDCFGFLHRGSRLLGWWSIDEGSREDQARLVHE 338 (425)
Q Consensus 306 ~~~~~~~~~~~~l~~~W~~~~~~~ee~ar~~~~ 338 (425)
.|-+.=.+||..|.+ |+.+||||+||+|++|+
T Consensus 76 ~D~V~Cf~C~~~L~~-We~~DdP~~EH~r~~P~ 107 (141)
T 1i4o_C 76 GDQVQCFCCGGKLKN-WEPCDRAWSEHRRHFPN 107 (141)
T ss_pred CCEEEeccCCCEecC-CCCCCCHHHHHHHHCcC
Confidence 577888889999999 99999999999999999
No 22
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=96.53 E-value=0.00096 Score=57.77 Aligned_cols=32 Identities=41% Similarity=0.721 Sum_probs=26.4
Q ss_pred HhhhccccccccccCceeEEEecCCccccccccc
Q 014396 389 RLQNEKVLCRVCFEGDISVVLLPCRHRILCRYDH 422 (425)
Q Consensus 389 ~l~~e~~~CkiC~~~~~~vv~lPC~H~~~C~~Ca 422 (425)
.++++ ..|.||++.-.+.|.+||||. .|..|.
T Consensus 49 ~~~~~-~~C~iC~~~~~~~~~~~CgH~-fc~~Ci 80 (138)
T 4ayc_A 49 VLENE-LQCIICSEYFIEAVTLNCAHS-FCSYCI 80 (138)
T ss_dssp HHHHH-SBCTTTCSBCSSEEEETTSCE-EEHHHH
T ss_pred hcccc-CCCcccCcccCCceECCCCCC-ccHHHH
Confidence 34444 489999999999999999996 498884
No 23
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=96.24 E-value=0.0025 Score=53.87 Aligned_cols=34 Identities=18% Similarity=0.475 Sum_probs=27.6
Q ss_pred HHHhhhccccccccccCceeEEEecCCccccccccc
Q 014396 387 FERLQNEKVLCRVCFEGDISVVLLPCRHRILCRYDH 422 (425)
Q Consensus 387 ~~~l~~e~~~CkiC~~~~~~vv~lPC~H~~~C~~Ca 422 (425)
.+.++++ ..|.||++.-.+-|.+||||.. |..|.
T Consensus 46 ~~~~~~~-~~C~IC~~~~~~p~~~~CgH~f-C~~Ci 79 (124)
T 3fl2_A 46 LSKVEET-FQCICCQELVFRPITTVCQHNV-CKDCL 79 (124)
T ss_dssp HHHHHHH-TBCTTTSSBCSSEEECTTSCEE-EHHHH
T ss_pred HHhCccC-CCCCcCChHHcCcEEeeCCCcc-cHHHH
Confidence 3455555 4899999999999999999986 77774
No 24
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.24 E-value=0.00049 Score=52.30 Aligned_cols=26 Identities=31% Similarity=0.896 Sum_probs=23.3
Q ss_pred ccccccccCceeEEEecCCccccccccc
Q 014396 395 VLCRVCFEGDISVVLLPCRHRILCRYDH 422 (425)
Q Consensus 395 ~~CkiC~~~~~~vv~lPC~H~~~C~~Ca 422 (425)
..|.||++...+ +.+||||. .|.+|.
T Consensus 16 ~~C~IC~~~~~~-~~~~CgH~-fc~~Ci 41 (70)
T 2ecn_A 16 EECCICMDGRAD-LILPCAHS-FCQKCI 41 (70)
T ss_dssp CCCSSSCCSCCS-EEETTTEE-ECHHHH
T ss_pred CCCeeCCcCccC-cccCCCCc-ccHHHH
Confidence 489999999999 99999999 488885
No 25
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=95.96 E-value=0.0021 Score=65.66 Aligned_cols=27 Identities=37% Similarity=0.821 Sum_probs=25.1
Q ss_pred ccccccccCceeEEEecCCccccccccc
Q 014396 395 VLCRVCFEGDISVVLLPCRHRILCRYDH 422 (425)
Q Consensus 395 ~~CkiC~~~~~~vv~lPC~H~~~C~~Ca 422 (425)
..|.||++...+.+.+||||.. |..|.
T Consensus 333 ~~C~ICle~~~~pv~lpCGH~F-C~~Ci 359 (389)
T 2y1n_A 333 QLCKICAENDKDVKIEPCGHLM-CTSCL 359 (389)
T ss_dssp SBCTTTSSSBCCEEEETTCCEE-CHHHH
T ss_pred CCCCccCcCCCCeEEeCCCChh-hHHHH
Confidence 4899999999999999999997 99985
No 26
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.92 E-value=0.00066 Score=50.58 Aligned_cols=32 Identities=31% Similarity=0.643 Sum_probs=26.4
Q ss_pred HhhhccccccccccCceeEEEecCCccccccccc
Q 014396 389 RLQNEKVLCRVCFEGDISVVLLPCRHRILCRYDH 422 (425)
Q Consensus 389 ~l~~e~~~CkiC~~~~~~vv~lPC~H~~~C~~Ca 422 (425)
+++++ ..|.||++.-.+.+.+||||.. |.+|.
T Consensus 16 ~~~~~-~~C~IC~~~~~~p~~~~CgH~f-C~~Ci 47 (63)
T 2ysj_A 16 KLQEE-VICPICLDILQKPVTIDCGHNF-CLKCI 47 (63)
T ss_dssp CCCCC-CBCTTTCSBCSSCEECTTSSEE-CHHHH
T ss_pred hCccC-CCCCcCCchhCCeEEeCCCCcc-hHHHH
Confidence 34444 4899999999999999999996 88885
No 27
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=95.90 E-value=0.0019 Score=57.20 Aligned_cols=34 Identities=24% Similarity=0.511 Sum_probs=27.3
Q ss_pred HHHhhhccccccccccCceeEEEecCCccccccccc
Q 014396 387 FERLQNEKVLCRVCFEGDISVVLLPCRHRILCRYDH 422 (425)
Q Consensus 387 ~~~l~~e~~~CkiC~~~~~~vv~lPC~H~~~C~~Ca 422 (425)
.+.++++ ..|.||++.-.+-|.+||||.. |..|.
T Consensus 72 ~~~l~~~-~~C~IC~~~~~~pv~~~CgH~f-C~~Ci 105 (150)
T 1z6u_A 72 LKKLEQS-FMCVCCQELVYQPVTTECFHNV-CKDCL 105 (150)
T ss_dssp HHHHHHH-TBCTTTSSBCSSEEECTTSCEE-EHHHH
T ss_pred HHhCccC-CEeecCChhhcCCEEcCCCCch-hHHHH
Confidence 3445544 4899999999999999999976 87774
No 28
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.88 E-value=0.00079 Score=51.31 Aligned_cols=27 Identities=26% Similarity=0.591 Sum_probs=24.2
Q ss_pred ccccccccCceeEEEecCCccccccccc
Q 014396 395 VLCRVCFEGDISVVLLPCRHRILCRYDH 422 (425)
Q Consensus 395 ~~CkiC~~~~~~vv~lPC~H~~~C~~Ca 422 (425)
..|.||++.-.+.+.+||||.. |.+|.
T Consensus 21 ~~C~IC~~~~~~~~~~~CgH~f-C~~Ci 47 (73)
T 2ysl_A 21 VICPICLDILQKPVTIDCGHNF-CLKCI 47 (73)
T ss_dssp CBCTTTCSBCSSEEECTTCCEE-EHHHH
T ss_pred CEeccCCcccCCeEEcCCCChh-hHHHH
Confidence 4899999999999999999995 88885
No 29
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.82 E-value=0.00058 Score=49.68 Aligned_cols=27 Identities=30% Similarity=0.630 Sum_probs=24.3
Q ss_pred ccccccccCceeEEEecCCccccccccc
Q 014396 395 VLCRVCFEGDISVVLLPCRHRILCRYDH 422 (425)
Q Consensus 395 ~~CkiC~~~~~~vv~lPC~H~~~C~~Ca 422 (425)
..|.||++.-.+.+.+||||.. |.+|.
T Consensus 16 ~~C~IC~~~~~~p~~~~CgH~f-C~~Ci 42 (58)
T 2ecj_A 16 ASCSVCLEYLKEPVIIECGHNF-CKACI 42 (58)
T ss_dssp CBCSSSCCBCSSCCCCSSCCCC-CHHHH
T ss_pred CCCccCCcccCccEeCCCCCcc-CHHHH
Confidence 4899999999999999999985 88884
No 30
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.81 E-value=0.0025 Score=48.70 Aligned_cols=29 Identities=28% Similarity=0.623 Sum_probs=25.0
Q ss_pred cccccccccCceeEEEecCCcccccccccC
Q 014396 394 KVLCRVCFEGDISVVLLPCRHRILCRYDHL 423 (425)
Q Consensus 394 ~~~CkiC~~~~~~vv~lPC~H~~~C~~Ca~ 423 (425)
...|.||++.-.+.+.+||||.. |.+|..
T Consensus 15 ~~~C~IC~~~~~~~~~~~CgH~f-C~~Ci~ 43 (71)
T 2d8t_A 15 VPECAICLQTCVHPVSLPCKHVF-CYLCVK 43 (71)
T ss_dssp CCBCSSSSSBCSSEEEETTTEEE-EHHHHH
T ss_pred CCCCccCCcccCCCEEccCCCHH-HHHHHH
Confidence 34799999999999999999994 888853
No 31
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.62 E-value=0.0021 Score=47.42 Aligned_cols=30 Identities=27% Similarity=0.497 Sum_probs=25.6
Q ss_pred ccccccccccCceeEEEecCCcccccccccC
Q 014396 393 EKVLCRVCFEGDISVVLLPCRHRILCRYDHL 423 (425)
Q Consensus 393 e~~~CkiC~~~~~~vv~lPC~H~~~C~~Ca~ 423 (425)
+...|.||++.-.+-+.+||||.. |..|..
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~f-C~~Ci~ 34 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTL-CSGCLE 34 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCS-BTTTCS
T ss_pred cCCCceEeCCccCCeEEcCCCCcc-cHHHHc
Confidence 345799999999999999999976 888864
No 32
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=95.45 E-value=0.0041 Score=46.72 Aligned_cols=28 Identities=29% Similarity=0.663 Sum_probs=24.0
Q ss_pred cccccccccCcee-EEEecCCccccccccc
Q 014396 394 KVLCRVCFEGDIS-VVLLPCRHRILCRYDH 422 (425)
Q Consensus 394 ~~~CkiC~~~~~~-vv~lPC~H~~~C~~Ca 422 (425)
...|.||++.-.+ ++.+||||. .|..|.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~-fc~~Ci 33 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHA-FCYVCI 33 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEE-ESTTHH
T ss_pred CCCCeeCCccccCCcEecCCCCe-eHHHHH
Confidence 3479999999888 699999999 488885
No 33
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.21 E-value=0.0042 Score=50.99 Aligned_cols=33 Identities=24% Similarity=0.524 Sum_probs=26.4
Q ss_pred HHhhhccccccccccCceeEEEecCCccccccccc
Q 014396 388 ERLQNEKVLCRVCFEGDISVVLLPCRHRILCRYDH 422 (425)
Q Consensus 388 ~~l~~e~~~CkiC~~~~~~vv~lPC~H~~~C~~Ca 422 (425)
+.++++ ..|.||++.-.+.+.+||||.. |..|.
T Consensus 16 ~~~~~~-~~C~IC~~~~~~p~~~~CgH~f-C~~Ci 48 (112)
T 1jm7_A 16 NAMQKI-LECPICLELIKEPVSTKCDHIF-CKFCM 48 (112)
T ss_dssp HHHHHH-TSCSSSCCCCSSCCBCTTSCCC-CSHHH
T ss_pred HhccCC-CCCcccChhhcCeEECCCCCHH-HHHHH
Confidence 344444 4899999999999999999976 88884
No 34
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.16 E-value=0.0022 Score=49.08 Aligned_cols=32 Identities=25% Similarity=0.525 Sum_probs=25.4
Q ss_pred HhhhccccccccccCceeEEEe-cCCccccccccc
Q 014396 389 RLQNEKVLCRVCFEGDISVVLL-PCRHRILCRYDH 422 (425)
Q Consensus 389 ~l~~e~~~CkiC~~~~~~vv~l-PC~H~~~C~~Ca 422 (425)
+++++ ..|.||++.-.+.+.+ ||||.. |.+|.
T Consensus 11 ~~~~~-~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci 43 (72)
T 2djb_A 11 ELTPY-ILCSICKGYLIDATTITECLHTF-CKSCI 43 (72)
T ss_dssp CCCGG-GSCTTTSSCCSSCEECSSSCCEE-CHHHH
T ss_pred hcCCC-CCCCCCChHHHCcCEECCCCCHH-HHHHH
Confidence 34434 4899999999988887 999987 88774
No 35
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=95.14 E-value=0.0027 Score=49.09 Aligned_cols=32 Identities=25% Similarity=0.611 Sum_probs=26.1
Q ss_pred HhhhccccccccccCceeEEEec-CCccccccccc
Q 014396 389 RLQNEKVLCRVCFEGDISVVLLP-CRHRILCRYDH 422 (425)
Q Consensus 389 ~l~~e~~~CkiC~~~~~~vv~lP-C~H~~~C~~Ca 422 (425)
.++++ ..|.||++.-.+-|.+| |||.. |..|.
T Consensus 11 ~~~~~-~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci 43 (74)
T 2yur_A 11 PIPDE-LLCLICKDIMTDAVVIPCCGNSY-CDECI 43 (74)
T ss_dssp CSCGG-GSCSSSCCCCTTCEECSSSCCEE-CTTHH
T ss_pred cCCCC-CCCcCCChHHhCCeEcCCCCCHH-HHHHH
Confidence 34444 48999999999999999 99976 88874
No 36
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.98 E-value=0.005 Score=47.60 Aligned_cols=27 Identities=30% Similarity=0.597 Sum_probs=24.1
Q ss_pred ccccccccCceeEEEecCCccccccccc
Q 014396 395 VLCRVCFEGDISVVLLPCRHRILCRYDH 422 (425)
Q Consensus 395 ~~CkiC~~~~~~vv~lPC~H~~~C~~Ca 422 (425)
..|.||++.-.+.+.+||||.. |.+|.
T Consensus 20 ~~C~IC~~~~~~p~~~~CgH~f-C~~Ci 46 (85)
T 2ecv_A 20 VTCPICLELLTQPLSLDCGHSF-CQACL 46 (85)
T ss_dssp CCCTTTCSCCSSCBCCSSSCCB-CTTHH
T ss_pred CCCCCCCcccCCceeCCCCCHH-HHHHH
Confidence 4899999999999999999986 88885
No 37
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=94.84 E-value=0.0073 Score=46.68 Aligned_cols=27 Identities=33% Similarity=0.586 Sum_probs=24.0
Q ss_pred ccccccccCceeEEEecCCccccccccc
Q 014396 395 VLCRVCFEGDISVVLLPCRHRILCRYDH 422 (425)
Q Consensus 395 ~~CkiC~~~~~~vv~lPC~H~~~C~~Ca 422 (425)
..|.||++.-.+-+.+||||.. |..|.
T Consensus 20 ~~C~IC~~~~~~p~~~~CgH~f-C~~Ci 46 (85)
T 2ecw_A 20 VTCPICLELLKEPVSADCNHSF-CRACI 46 (85)
T ss_dssp TSCTTTCSCCSSCEECTTSCCB-CHHHH
T ss_pred CCCcCCChhhCcceeCCCCCHH-HHHHH
Confidence 4899999999999999999975 88885
No 38
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.83 E-value=0.008 Score=46.90 Aligned_cols=28 Identities=25% Similarity=0.508 Sum_probs=24.7
Q ss_pred cccccccccCceeEEEecCCccccccccc
Q 014396 394 KVLCRVCFEGDISVVLLPCRHRILCRYDH 422 (425)
Q Consensus 394 ~~~CkiC~~~~~~vv~lPC~H~~~C~~Ca 422 (425)
...|.||++.-.+.+.+||||.. |..|.
T Consensus 15 ~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci 42 (81)
T 2csy_A 15 PFRCFICRQAFQNPVVTKCRHYF-CESCA 42 (81)
T ss_dssp CSBCSSSCSBCCSEEECTTSCEE-EHHHH
T ss_pred CCCCcCCCchhcCeeEccCCCHh-HHHHH
Confidence 45899999999999999999987 88875
No 39
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=94.80 E-value=0.011 Score=47.89 Aligned_cols=35 Identities=20% Similarity=0.533 Sum_probs=27.1
Q ss_pred HHHHhhhccccccccccCceeEEEe-cCCccccccccc
Q 014396 386 EFERLQNEKVLCRVCFEGDISVVLL-PCRHRILCRYDH 422 (425)
Q Consensus 386 e~~~l~~e~~~CkiC~~~~~~vv~l-PC~H~~~C~~Ca 422 (425)
..+.++++ ..|.||++.-.+-+.+ ||||.. |..|.
T Consensus 15 ~~~~~~~~-~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci 50 (99)
T 2y43_A 15 VMKTIDDL-LRCGICFEYFNIAMIIPQCSHNY-CSLCI 50 (99)
T ss_dssp GGHHHHHH-TBCTTTCSBCSSEEECTTTCCEE-EHHHH
T ss_pred HHHhCCCC-CCcccCChhhCCcCEECCCCCHh-hHHHH
Confidence 34555554 4899999999999888 999986 77774
No 40
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.75 E-value=0.0083 Score=46.97 Aligned_cols=27 Identities=37% Similarity=0.716 Sum_probs=23.6
Q ss_pred ccccccccCcee----EEEecCCccccccccc
Q 014396 395 VLCRVCFEGDIS----VVLLPCRHRILCRYDH 422 (425)
Q Consensus 395 ~~CkiC~~~~~~----vv~lPC~H~~~C~~Ca 422 (425)
..|.||++.-.+ .+.+||||.. |.+|.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~CgH~f-C~~Ci 46 (88)
T 2ct2_A 16 LECPICMESFTEEQLRPKLLHCGHTI-CRQCL 46 (88)
T ss_dssp CBCTTTCCBCCTTSSCEEECSSSCEE-EHHHH
T ss_pred CCCccCCccccccCCCeEECCCCChh-hHHHH
Confidence 489999999888 9999999976 88885
No 41
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=94.52 E-value=0.0052 Score=47.26 Aligned_cols=28 Identities=32% Similarity=0.616 Sum_probs=24.6
Q ss_pred ccccccccCceeEEEecCCcccccccccC
Q 014396 395 VLCRVCFEGDISVVLLPCRHRILCRYDHL 423 (425)
Q Consensus 395 ~~CkiC~~~~~~vv~lPC~H~~~C~~Ca~ 423 (425)
..|.||++.-.+.+.+||||.. |.+|..
T Consensus 13 ~~C~IC~~~~~~p~~l~CgH~f-C~~Ci~ 40 (79)
T 2egp_A 13 VTCPICLELLTEPLSLDCGHSL-CRACIT 40 (79)
T ss_dssp CEETTTTEECSSCCCCSSSCCC-CHHHHS
T ss_pred CCCcCCCcccCCeeECCCCCHH-HHHHHH
Confidence 4899999999998999999976 888865
No 42
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=94.44 E-value=0.013 Score=41.93 Aligned_cols=27 Identities=30% Similarity=0.565 Sum_probs=22.1
Q ss_pred ccccccccCcee----EEEecCCccccccccc
Q 014396 395 VLCRVCFEGDIS----VVLLPCRHRILCRYDH 422 (425)
Q Consensus 395 ~~CkiC~~~~~~----vv~lPC~H~~~C~~Ca 422 (425)
..|.||++.-.+ ++.+||||.. |.+|.
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~CgH~f-c~~Ci 36 (55)
T 2ecm_A 6 SGCPICLEDIHTSRVVAHVLPCGHLL-HRTCY 36 (55)
T ss_dssp CSCTTTCCCCCTTTSCEEECTTSCEE-ETTHH
T ss_pred CcCcccChhhcCCCcCeEecCCCCcc-cHHHH
Confidence 479999997655 9999999964 88775
No 43
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=94.33 E-value=0.014 Score=47.73 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=28.8
Q ss_pred HHHHHhhhccccccccccCceeEEE-ecCCccccccccc
Q 014396 385 QEFERLQNEKVLCRVCFEGDISVVL-LPCRHRILCRYDH 422 (425)
Q Consensus 385 ~e~~~l~~e~~~CkiC~~~~~~vv~-lPC~H~~~C~~Ca 422 (425)
...+.++++. .|.||++.-.+-+. +||||.. |..|-
T Consensus 14 ~~~~~l~~~~-~C~IC~~~~~~p~~~~~CgH~F-C~~Ci 50 (100)
T 3lrq_A 14 QSVESIAEVF-RCFICMEKLRDARLCPHCSKLC-CFSCI 50 (100)
T ss_dssp HHHHHHHHHT-BCTTTCSBCSSEEECTTTCCEE-EHHHH
T ss_pred cccccCCCCC-CCccCCccccCccccCCCCChh-hHHHH
Confidence 3445666654 89999999999999 9999986 77763
No 44
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=94.29 E-value=0.012 Score=48.39 Aligned_cols=33 Identities=21% Similarity=0.465 Sum_probs=26.6
Q ss_pred HHhhhccccccccccCceeEEEe-cCCccccccccc
Q 014396 388 ERLQNEKVLCRVCFEGDISVVLL-PCRHRILCRYDH 422 (425)
Q Consensus 388 ~~l~~e~~~CkiC~~~~~~vv~l-PC~H~~~C~~Ca 422 (425)
+.++++ ..|.||++.-.+-+.+ ||||.. |..|.
T Consensus 10 ~~~~~~-~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci 43 (108)
T 2ckl_A 10 TELNPH-LMCVLCGGYFIDATTIIECLHSF-CKTCI 43 (108)
T ss_dssp HHHGGG-TBCTTTSSBCSSEEEETTTCCEE-EHHHH
T ss_pred hccCCc-CCCccCChHHhCcCEeCCCCChh-hHHHH
Confidence 455555 4899999999999998 999986 77774
No 45
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=94.19 E-value=0.0074 Score=45.50 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=21.2
Q ss_pred ccccccccC---ceeEEEecCCccccccccc
Q 014396 395 VLCRVCFEG---DISVVLLPCRHRILCRYDH 422 (425)
Q Consensus 395 ~~CkiC~~~---~~~vv~lPC~H~~~C~~Ca 422 (425)
..|.||++. ..+++.+||||.. |..|.
T Consensus 15 ~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci 44 (69)
T 2kiz_A 15 EKCTICLSILEEGEDVRRLPCMHLF-HQVCV 44 (69)
T ss_dssp CSBTTTTBCCCSSSCEEECTTSCEE-EHHHH
T ss_pred CCCeeCCccccCCCcEEEeCCCCHH-HHHHH
Confidence 479999654 4678999999985 77774
No 46
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.07 E-value=0.017 Score=48.38 Aligned_cols=37 Identities=24% Similarity=0.388 Sum_probs=29.7
Q ss_pred HHHHHhhhccccccccccCceeEEEe-cCCcccccccccC
Q 014396 385 QEFERLQNEKVLCRVCFEGDISVVLL-PCRHRILCRYDHL 423 (425)
Q Consensus 385 ~e~~~l~~e~~~CkiC~~~~~~vv~l-PC~H~~~C~~Ca~ 423 (425)
+..+.++++ ..|.||++.-.+-|.+ ||||.. |..|..
T Consensus 14 ~~~~~l~~~-~~C~IC~~~~~~pv~~~~CgH~f-C~~Ci~ 51 (117)
T 1jm7_B 14 AALDRLEKL-LRCSRCTNILREPVCLGGCEHIF-CSNCVS 51 (117)
T ss_dssp HHHHHHHHT-TSCSSSCSCCSSCBCCCSSSCCB-CTTTGG
T ss_pred HHHHhchhC-CCCCCCChHhhCccEeCCCCCHH-HHHHHH
Confidence 344556655 4899999999999999 999987 888854
No 47
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.78 E-value=0.01 Score=44.20 Aligned_cols=28 Identities=29% Similarity=0.663 Sum_probs=22.5
Q ss_pred cccccccccCceeE-------EEecCCccccccccc
Q 014396 394 KVLCRVCFEGDISV-------VLLPCRHRILCRYDH 422 (425)
Q Consensus 394 ~~~CkiC~~~~~~v-------v~lPC~H~~~C~~Ca 422 (425)
...|.||++.-.+. +.+||||.. |.+|.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci 49 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCL 49 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEE-EHHHH
T ss_pred CCCCcccCccccccccccCCeEeCCCCChh-cHHHH
Confidence 34899999986664 899999965 88774
No 48
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=93.46 E-value=0.014 Score=44.91 Aligned_cols=27 Identities=37% Similarity=0.539 Sum_probs=21.1
Q ss_pred ccccccccC---ceeEEEecCCccccccccc
Q 014396 395 VLCRVCFEG---DISVVLLPCRHRILCRYDH 422 (425)
Q Consensus 395 ~~CkiC~~~---~~~vv~lPC~H~~~C~~Ca 422 (425)
..|.||++. +..++.+||||.. |..|.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci 45 (78)
T 2ect_A 16 LECPVCKEDYALGESVRQLPCNHLF-HDSCI 45 (78)
T ss_dssp CCCTTTTSCCCTTSCEEECTTSCEE-ETTTT
T ss_pred CCCeeCCccccCCCCEEEeCCCCee-cHHHH
Confidence 489999554 4567888999975 88885
No 49
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.42 E-value=0.0098 Score=44.58 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=24.3
Q ss_pred cccccccccCceeEEEecCCccccccccc
Q 014396 394 KVLCRVCFEGDISVVLLPCRHRILCRYDH 422 (425)
Q Consensus 394 ~~~CkiC~~~~~~vv~lPC~H~~~C~~Ca 422 (425)
...|.||++.-.+.+.+||||.. |.+|.
T Consensus 15 ~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci 42 (66)
T 2ecy_A 15 KYKCEKCHLVLCSPKQTECGHRF-CESCM 42 (66)
T ss_dssp CEECTTTCCEESSCCCCSSSCCC-CHHHH
T ss_pred CCCCCCCChHhcCeeECCCCCHH-HHHHH
Confidence 34899999999999999999986 88874
No 50
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=93.28 E-value=0.015 Score=42.68 Aligned_cols=27 Identities=30% Similarity=0.687 Sum_probs=21.8
Q ss_pred ccccccccCcee-------EEEecCCccccccccc
Q 014396 395 VLCRVCFEGDIS-------VVLLPCRHRILCRYDH 422 (425)
Q Consensus 395 ~~CkiC~~~~~~-------vv~lPC~H~~~C~~Ca 422 (425)
..|.||++.-.+ ++.+||||.. |.+|.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci 37 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCL 37 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEE-EHHHH
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCch-hHHHH
Confidence 479999997655 4899999995 87774
No 51
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=93.24 E-value=0.02 Score=47.56 Aligned_cols=28 Identities=32% Similarity=0.738 Sum_probs=24.6
Q ss_pred ccccccccCceeEEEecCCcccccccccC
Q 014396 395 VLCRVCFEGDISVVLLPCRHRILCRYDHL 423 (425)
Q Consensus 395 ~~CkiC~~~~~~vv~lPC~H~~~C~~Ca~ 423 (425)
..|.||++.-.+-+.+||||.. |..|..
T Consensus 16 ~~C~iC~~~~~~p~~~~CgH~f-C~~Ci~ 43 (115)
T 3l11_A 16 CQCGICMEILVEPVTLPCNHTL-CKPCFQ 43 (115)
T ss_dssp HBCTTTCSBCSSCEECTTSCEE-CHHHHC
T ss_pred CCCccCCcccCceeEcCCCCHH-hHHHHH
Confidence 4799999999999999999986 888854
No 52
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=93.12 E-value=0.015 Score=43.73 Aligned_cols=27 Identities=30% Similarity=0.687 Sum_probs=22.0
Q ss_pred ccccccccCceeE-------EEecCCccccccccc
Q 014396 395 VLCRVCFEGDISV-------VLLPCRHRILCRYDH 422 (425)
Q Consensus 395 ~~CkiC~~~~~~v-------v~lPC~H~~~C~~Ca 422 (425)
..|.||++.-.+- +.+||||.. |.+|.
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci 44 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCL 44 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEECTTSCEE-EHHHH
T ss_pred CCCcccChhhhccccccCCeEeCCCCChH-hHHHH
Confidence 4799999986654 899999975 88774
No 53
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.94 E-value=0.013 Score=44.78 Aligned_cols=27 Identities=33% Similarity=0.614 Sum_probs=20.8
Q ss_pred ccccccccCc---eeEEEecCCccccccccc
Q 014396 395 VLCRVCFEGD---ISVVLLPCRHRILCRYDH 422 (425)
Q Consensus 395 ~~CkiC~~~~---~~vv~lPC~H~~~C~~Ca 422 (425)
..|.||++.- ..++.+||||.. |.+|.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~f-~~~Ci 45 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDELGICPCKHAF-HRKCL 45 (74)
T ss_dssp CBCSSSCCBCCSSSCEEEETTTEEE-EHHHH
T ss_pred CCCcCCCcccCCCCcEEEcCCCCEe-cHHHH
Confidence 3799999873 556778999984 77774
No 54
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=92.94 E-value=0.032 Score=39.92 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=21.9
Q ss_pred ccccccccCcee---EEEec-CCccccccccc
Q 014396 395 VLCRVCFEGDIS---VVLLP-CRHRILCRYDH 422 (425)
Q Consensus 395 ~~CkiC~~~~~~---vv~lP-C~H~~~C~~Ca 422 (425)
..|.||++.-.+ ++.+| |||.. |.+|.
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~f-~~~Ci 36 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHGF-HAECV 36 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCEE-CTTHH
T ss_pred CcCccCCccccCCCceEECCCCCCcc-cHHHH
Confidence 479999988666 78888 99975 88774
No 55
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=92.85 E-value=0.017 Score=43.14 Aligned_cols=27 Identities=19% Similarity=0.448 Sum_probs=20.0
Q ss_pred cccccccc-C---c-eeEEEecCCccccccccc
Q 014396 395 VLCRVCFE-G---D-ISVVLLPCRHRILCRYDH 422 (425)
Q Consensus 395 ~~CkiC~~-~---~-~~vv~lPC~H~~~C~~Ca 422 (425)
..|.||++ . + .-++.+||||.. |.+|.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~f-C~~Ci 35 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTL-CESCV 35 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCE-EHHHH
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHh-HHHHH
Confidence 47999999 2 2 223678999986 88874
No 56
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.72 E-value=0.04 Score=42.21 Aligned_cols=28 Identities=29% Similarity=0.566 Sum_probs=21.5
Q ss_pred cccccccccC---ceeEEEecCCccccccccc
Q 014396 394 KVLCRVCFEG---DISVVLLPCRHRILCRYDH 422 (425)
Q Consensus 394 ~~~CkiC~~~---~~~vv~lPC~H~~~C~~Ca 422 (425)
...|.||++. ...++.+||||.. |.+|.
T Consensus 23 ~~~C~IC~~~~~~~~~~~~l~C~H~f-h~~Ci 53 (75)
T 1x4j_A 23 QTLCVVCMCDFESRQLLRVLPCNHEF-HAKCV 53 (75)
T ss_dssp CCEETTTTEECCBTCEEEEETTTEEE-ETTHH
T ss_pred CCCCeECCcccCCCCeEEEECCCCHh-HHHHH
Confidence 3479999955 4457889999984 88774
No 57
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=92.61 E-value=0.033 Score=49.16 Aligned_cols=32 Identities=25% Similarity=0.599 Sum_probs=25.5
Q ss_pred HhhhccccccccccCceeEEEe-cCCccccccccc
Q 014396 389 RLQNEKVLCRVCFEGDISVVLL-PCRHRILCRYDH 422 (425)
Q Consensus 389 ~l~~e~~~CkiC~~~~~~vv~l-PC~H~~~C~~Ca 422 (425)
.+.++ ..|.||++.-.+.+.+ ||||.. |..|.
T Consensus 50 ~~~~~-~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci 82 (165)
T 2ckl_B 50 SLHSE-LMCPICLDMLKNTMTTKECLHRF-CADCI 82 (165)
T ss_dssp CCHHH-HBCTTTSSBCSSEEEETTTCCEE-EHHHH
T ss_pred hCCCC-CCCcccChHhhCcCEeCCCCChh-HHHHH
Confidence 34433 4899999999999888 999976 88774
No 58
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=92.49 E-value=0.026 Score=44.82 Aligned_cols=27 Identities=26% Similarity=0.631 Sum_probs=23.7
Q ss_pred ccccccccCceeEEEec-CCccccccccc
Q 014396 395 VLCRVCFEGDISVVLLP-CRHRILCRYDH 422 (425)
Q Consensus 395 ~~CkiC~~~~~~vv~lP-C~H~~~C~~Ca 422 (425)
..|.||++.-.+-|.+| |||.. |..|.
T Consensus 14 ~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci 41 (92)
T 3ztg_A 14 LLCLICKDIMTDAVVIPCCGNSY-CDECI 41 (92)
T ss_dssp TEETTTTEECSSCEECTTTCCEE-CHHHH
T ss_pred CCCCCCChhhcCceECCCCCCHH-HHHHH
Confidence 48999999999999999 99986 77774
No 59
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=91.85 E-value=0.055 Score=44.90 Aligned_cols=31 Identities=23% Similarity=0.483 Sum_probs=25.5
Q ss_pred hhhccccccccccCceeEEEecCCccccccccc
Q 014396 390 LQNEKVLCRVCFEGDISVVLLPCRHRILCRYDH 422 (425)
Q Consensus 390 l~~e~~~CkiC~~~~~~vv~lPC~H~~~C~~Ca 422 (425)
++++ ..|.||++.-.+.+.+||||.. |..|.
T Consensus 20 ~~~~-~~C~IC~~~~~~p~~~~CgH~f-C~~Ci 50 (116)
T 1rmd_A 20 FVKS-ISCQICEHILADPVETSCKHLF-CRICI 50 (116)
T ss_dssp HHHH-TBCTTTCSBCSSEEECTTSCEE-EHHHH
T ss_pred ccCC-CCCCCCCcHhcCcEEcCCCCcc-cHHHH
Confidence 4433 4899999999999999999987 77774
No 60
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=91.34 E-value=0.048 Score=43.71 Aligned_cols=27 Identities=22% Similarity=0.539 Sum_probs=21.0
Q ss_pred ccccccccCcee---EEEecCCccccccccc
Q 014396 395 VLCRVCFEGDIS---VVLLPCRHRILCRYDH 422 (425)
Q Consensus 395 ~~CkiC~~~~~~---vv~lPC~H~~~C~~Ca 422 (425)
..|.||++.-.+ ++.+||||.. |..|.
T Consensus 41 ~~C~IC~~~~~~~~~~~~l~C~H~F-h~~Ci 70 (91)
T 2l0b_A 41 MCCPICCSEYVKGDVATELPCHHYF-HKPCV 70 (91)
T ss_dssp SEETTTTEECCTTCEEEEETTTEEE-EHHHH
T ss_pred CCCcccChhhcCCCcEEecCCCChH-HHHHH
Confidence 479999876554 8889999964 77774
No 61
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=91.32 E-value=0.062 Score=41.24 Aligned_cols=28 Identities=14% Similarity=0.118 Sum_probs=24.0
Q ss_pred cccccccccCceeEEEecCCccccccccc
Q 014396 394 KVLCRVCFEGDISVVLLPCRHRILCRYDH 422 (425)
Q Consensus 394 ~~~CkiC~~~~~~vv~lPC~H~~~C~~Ca 422 (425)
...|.||++--.+-|.+||||.. |..|-
T Consensus 8 ~~~C~IC~~~~~~Pv~~~CgH~f-c~~Ci 35 (78)
T 1t1h_A 8 YFRCPISLELMKDPVIVSTGQTY-ERSSI 35 (78)
T ss_dssp SSSCTTTSCCCSSEEEETTTEEE-EHHHH
T ss_pred cCCCCCccccccCCEEcCCCCee-cHHHH
Confidence 35899999999999999999986 77773
No 62
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=91.13 E-value=0.016 Score=45.99 Aligned_cols=27 Identities=33% Similarity=0.795 Sum_probs=21.1
Q ss_pred ccccccccCc--eeEEEec--CCccccccccc
Q 014396 395 VLCRVCFEGD--ISVVLLP--CRHRILCRYDH 422 (425)
Q Consensus 395 ~~CkiC~~~~--~~vv~lP--C~H~~~C~~Ca 422 (425)
..|.||+|.- .|.++.| |||.. |..|.
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~f-C~~Cl 42 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQI-CRFCW 42 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCC-CHHHH
T ss_pred CcCCccCccCccccccccccCCCCCc-CHHHH
Confidence 4899999965 3567777 99985 88774
No 63
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=90.73 E-value=0.075 Score=44.41 Aligned_cols=27 Identities=30% Similarity=0.650 Sum_probs=23.9
Q ss_pred ccccccccCceeEEEecCCccccccccc
Q 014396 395 VLCRVCFEGDISVVLLPCRHRILCRYDH 422 (425)
Q Consensus 395 ~~CkiC~~~~~~vv~lPC~H~~~C~~Ca 422 (425)
..|.||++.-.+-+.+||||.. |..|.
T Consensus 19 ~~C~IC~~~~~~p~~~~CgH~f-C~~Ci 45 (118)
T 3hct_A 19 YECPICLMALREAVQTPCGHRF-CKACI 45 (118)
T ss_dssp GBCTTTCSBCSSEEECTTSCEE-EHHHH
T ss_pred CCCCcCChhhcCeEECCcCChh-hHHHH
Confidence 4899999999999999999986 77774
No 64
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=87.82 E-value=0.094 Score=42.05 Aligned_cols=28 Identities=14% Similarity=0.377 Sum_probs=20.0
Q ss_pred cccccccccCcee--EEE-ecCCccccccccc
Q 014396 394 KVLCRVCFEGDIS--VVL-LPCRHRILCRYDH 422 (425)
Q Consensus 394 ~~~CkiC~~~~~~--vv~-lPC~H~~~C~~Ca 422 (425)
...|.||++.-.+ ++- .||||.. |.+|-
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~F-C~~Cl 35 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIF-CTLCL 35 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEE-EHHHH
T ss_pred CcCCcccCcccccccceEcCCCCCcc-cHHHH
Confidence 3479999987443 333 3899986 88884
No 65
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=86.14 E-value=0.24 Score=43.18 Aligned_cols=28 Identities=29% Similarity=0.523 Sum_probs=24.2
Q ss_pred cccccccccCceeEEEecCCccccccccc
Q 014396 394 KVLCRVCFEGDISVVLLPCRHRILCRYDH 422 (425)
Q Consensus 394 ~~~CkiC~~~~~~vv~lPC~H~~~C~~Ca 422 (425)
...|.||++--.+-|.+||||.. |..|-
T Consensus 31 ~~~C~IC~~~~~~pv~~~CgH~F-C~~Ci 58 (141)
T 3knv_A 31 KYLCSACRNVLRRPFQAQCGHRY-CSFCL 58 (141)
T ss_dssp GGBCTTTCSBCSSEEECTTSCEE-EHHHH
T ss_pred CcCCCCCChhhcCcEECCCCCcc-CHHHH
Confidence 35899999998888999999986 88874
No 66
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=82.31 E-value=0.46 Score=38.93 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=20.0
Q ss_pred cccccccCc------------------eeEEEecCCccccccccc
Q 014396 396 LCRVCFEGD------------------ISVVLLPCRHRILCRYDH 422 (425)
Q Consensus 396 ~CkiC~~~~------------------~~vv~lPC~H~~~C~~Ca 422 (425)
.|-||++.- ..++++||||.. |.+|-
T Consensus 27 ~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~F-h~~Ci 70 (114)
T 1v87_A 27 DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAF-HLLCL 70 (114)
T ss_dssp EETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEE-CHHHH
T ss_pred cCccCChhhcCcccccccccccccCcccceecCCCCCcc-cHHHH
Confidence 699998874 345589999976 77773
No 67
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=77.96 E-value=0.33 Score=39.98 Aligned_cols=27 Identities=15% Similarity=-0.127 Sum_probs=23.5
Q ss_pred cccccccccCceeEEEecCCcccccccc
Q 014396 394 KVLCRVCFEGDISVVLLPCRHRILCRYD 421 (425)
Q Consensus 394 ~~~CkiC~~~~~~vv~lPC~H~~~C~~C 421 (425)
...|.||++-=.|=|.+||||.. |..|
T Consensus 29 ~~~CpI~~~~m~dPV~~~cGhtf-~r~~ 55 (100)
T 2kre_A 29 EFRDPLMDTLMTDPVRLPSGTIM-DRSI 55 (100)
T ss_dssp TTBCTTTCSBCSSEEEETTTEEE-EHHH
T ss_pred hhCCcCccCcccCCeECCCCCEE-chHH
Confidence 35899999999999999999985 7766
No 68
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=77.61 E-value=0.35 Score=38.38 Aligned_cols=30 Identities=17% Similarity=-0.074 Sum_probs=24.6
Q ss_pred hhhccccccccccCceeEEEecCCcccccccc
Q 014396 390 LQNEKVLCRVCFEGDISVVLLPCRHRILCRYD 421 (425)
Q Consensus 390 l~~e~~~CkiC~~~~~~vv~lPC~H~~~C~~C 421 (425)
+.++ ..|-||++-=.|=|.+||||.. |..|
T Consensus 11 ~p~~-~~CpI~~~~m~dPV~~~cGhtf-~r~~ 40 (85)
T 2kr4_A 11 APDE-FRDPLMDTLMTDPVRLPSGTVM-DRSI 40 (85)
T ss_dssp CCTT-TBCTTTCSBCSSEEECTTSCEE-EHHH
T ss_pred Cchh-eECcccCchhcCCeECCCCCEE-CHHH
Confidence 4433 4899999999999999999975 7666
No 69
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=76.72 E-value=0.49 Score=39.03 Aligned_cols=29 Identities=28% Similarity=0.631 Sum_probs=22.4
Q ss_pred ccccccccccCceeE-------EEecCCccccccccc
Q 014396 393 EKVLCRVCFEGDISV-------VLLPCRHRILCRYDH 422 (425)
Q Consensus 393 e~~~CkiC~~~~~~v-------v~lPC~H~~~C~~Ca 422 (425)
+...|.||++.-.+. +.+||||.. |..|.
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci 106 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCL 106 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEE-EHHHH
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChh-hHHHH
Confidence 345799999876553 899999986 77774
No 70
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=73.67 E-value=1.1 Score=41.46 Aligned_cols=27 Identities=19% Similarity=0.132 Sum_probs=23.9
Q ss_pred cccccccccCceeEEEecCCcccccccc
Q 014396 394 KVLCRVCFEGDISVVLLPCRHRILCRYD 421 (425)
Q Consensus 394 ~~~CkiC~~~~~~vv~lPC~H~~~C~~C 421 (425)
...|.||++--.|=|.+||||.. |..|
T Consensus 208 ~~~c~i~~~~~~dPv~~~~gh~f-~~~~ 234 (281)
T 2c2l_A 208 YLCGKISFELMREPCITPSGITY-DRKD 234 (281)
T ss_dssp TTBCTTTCSBCSSEEECSSCCEE-ETTH
T ss_pred ccCCcCcCCHhcCCeECCCCCEE-CHHH
Confidence 45799999999999999999986 7777
No 71
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.98 E-value=1.1 Score=34.93 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=16.1
Q ss_pred cccccccCcee--------------E-EEecCCcccccccc
Q 014396 396 LCRVCFEGDIS--------------V-VLLPCRHRILCRYD 421 (425)
Q Consensus 396 ~CkiC~~~~~~--------------v-v~lPC~H~~~C~~C 421 (425)
.|.||++.-.+ + ++.+|||.. +.+|
T Consensus 17 ~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~F-H~~C 56 (81)
T 2ecl_A 17 TCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSF-HNCC 56 (81)
T ss_dssp CBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEE-EHHH
T ss_pred CCcccChhhhccCcccccccCCCceEEEeCCCCCcc-ChHH
Confidence 57777775533 4 444599985 5555
No 72
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.52 E-value=2 Score=34.48 Aligned_cols=27 Identities=19% Similarity=0.140 Sum_probs=23.0
Q ss_pred cccccccccCceeEEEec-CCcccccccc
Q 014396 394 KVLCRVCFEGDISVVLLP-CRHRILCRYD 421 (425)
Q Consensus 394 ~~~CkiC~~~~~~vv~lP-C~H~~~C~~C 421 (425)
...|-||++-=.|=|.+| |||.. |..|
T Consensus 7 ~~~CPI~~~~~~dPV~~~~cGh~f-~r~c 34 (94)
T 2yu4_A 7 GFTCPITKEEMKKPVKNKVCGHTY-EEDA 34 (94)
T ss_dssp CCBCTTTCSBCSSEEEESSSCCEE-EHHH
T ss_pred EeECcCcCchhcCCEEcCCCCCee-cHHH
Confidence 358999999999999997 99976 6665
No 73
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=65.95 E-value=2 Score=35.09 Aligned_cols=26 Identities=19% Similarity=0.088 Sum_probs=22.7
Q ss_pred ccccccccCceeEEEecCC-cccccccc
Q 014396 395 VLCRVCFEGDISVVLLPCR-HRILCRYD 421 (425)
Q Consensus 395 ~~CkiC~~~~~~vv~lPC~-H~~~C~~C 421 (425)
..|-||++-=.|=|.+||| |.. |..|
T Consensus 23 ~~CpI~~~~m~dPV~~~cG~htf-~r~c 49 (98)
T 1wgm_A 23 FLDPIMSTLMCDPVVLPSSRVTV-DRST 49 (98)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEE-EHHH
T ss_pred cCCcCccccccCCeECCCCCeEE-CHHH
Confidence 4899999999999999999 876 6665
No 74
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=56.05 E-value=4.4 Score=33.63 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=18.0
Q ss_pred cccccccCce------------------eEEEecCCcccccccc
Q 014396 396 LCRVCFEGDI------------------SVVLLPCRHRILCRYD 421 (425)
Q Consensus 396 ~CkiC~~~~~------------------~vv~lPC~H~~~C~~C 421 (425)
.|-||++.-. .++.+||||.. +..|
T Consensus 39 ~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~F-H~~C 81 (106)
T 3dpl_R 39 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF-HFHC 81 (106)
T ss_dssp CCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEE-EHHH
T ss_pred CCccCChhHhCcCchhhccccccCCccceEeecccCcEE-CHHH
Confidence 6889977622 37889999985 5555
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=52.05 E-value=3.2 Score=33.21 Aligned_cols=28 Identities=29% Similarity=0.554 Sum_probs=21.5
Q ss_pred cccccccccC-ceeEEE--ecCCccccccccc
Q 014396 394 KVLCRVCFEG-DISVVL--LPCRHRILCRYDH 422 (425)
Q Consensus 394 ~~~CkiC~~~-~~~vv~--lPC~H~~~C~~Ca 422 (425)
...|-+|.+. ..+.|. ++|+|.. |..|.
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~-C~~Cl 33 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSY-CDECL 33 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEE-CHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHH-hHHHC
Confidence 3589999974 455555 9999986 88885
No 76
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.66 E-value=5.4 Score=31.43 Aligned_cols=26 Identities=27% Similarity=0.620 Sum_probs=17.6
Q ss_pred ccccccccCc--eeEEEecCC-----cccccccc
Q 014396 395 VLCRVCFEGD--ISVVLLPCR-----HRILCRYD 421 (425)
Q Consensus 395 ~~CkiC~~~~--~~vv~lPC~-----H~~~C~~C 421 (425)
..|.||++.. -+.+.+||+ |.+ ..+|
T Consensus 16 ~~C~IC~~~~~~~~~l~~pC~C~Gs~h~f-H~~C 48 (80)
T 2d8s_A 16 DICRICHCEGDDESPLITPCHCTGSLHFV-HQAC 48 (80)
T ss_dssp CCCSSSCCCCCSSSCEECSSSCCSSSCCE-ETTH
T ss_pred CCCeEcCccccCCCeeEeccccCCcCCee-CHHH
Confidence 3799999642 345679996 875 4444
No 77
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=51.41 E-value=5 Score=36.57 Aligned_cols=27 Identities=19% Similarity=0.132 Sum_probs=23.0
Q ss_pred cccccccccCceeEEEecCCcccccccc
Q 014396 394 KVLCRVCFEGDISVVLLPCRHRILCRYD 421 (425)
Q Consensus 394 ~~~CkiC~~~~~~vv~lPC~H~~~C~~C 421 (425)
...|.||++-=.|=|.+||||.. |..|
T Consensus 106 ~f~CPI~~elm~DPV~~~~Ghtf-er~~ 132 (179)
T 2f42_A 106 YLCGKISFELMREPCITPSGITY-DRKD 132 (179)
T ss_dssp GGBCTTTCSBCSSEEECTTSCEE-EHHH
T ss_pred hhcccCccccCCCCeECCCCCEE-CHHH
Confidence 45899999999999999999965 6665
No 78
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=45.52 E-value=3.8 Score=30.58 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=15.5
Q ss_pred ccccccccCceeEEEecCCc
Q 014396 395 VLCRVCFEGDISVVLLPCRH 414 (425)
Q Consensus 395 ~~CkiC~~~~~~vv~lPC~H 414 (425)
..|+||++.+-+-++.||.+
T Consensus 7 ~~CrIC~~~~~~~l~~PC~C 26 (60)
T 1vyx_A 7 PVCWICNEELGNERFRACGC 26 (60)
T ss_dssp CEETTTTEECSCCCCCSCCC
T ss_pred CEeEEeecCCCCceecCcCC
Confidence 47999998766666799763
No 79
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=32.01 E-value=9.9 Score=32.24 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=0.0
Q ss_pred cccccccCce------------------eEEEecCCccccccccc
Q 014396 396 LCRVCFEGDI------------------SVVLLPCRHRILCRYDH 422 (425)
Q Consensus 396 ~CkiC~~~~~------------------~vv~lPC~H~~~C~~Ca 422 (425)
.|-||++.=. .++..||+|.. +..|-
T Consensus 50 ~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~F-H~~CI 93 (117)
T 4a0k_B 50 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF-HFHCI 93 (117)
T ss_dssp ---------------------------------------------
T ss_pred cCeECChhhcCcChhhhcccccccccccccccCCcCceE-cHHHH
Confidence 5888876532 34557999986 66664
No 80
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=31.33 E-value=24 Score=31.25 Aligned_cols=29 Identities=17% Similarity=0.424 Sum_probs=24.5
Q ss_pred cccccccccC-----ceeEEEecCCcccccccccC
Q 014396 394 KVLCRVCFEG-----DISVVLLPCRHRILCRYDHL 423 (425)
Q Consensus 394 ~~~CkiC~~~-----~~~vv~lPC~H~~~C~~Ca~ 423 (425)
...|.+|... ....+..-|.|.| |..|..
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~V-C~~C~~ 101 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFV-CKSCSH 101 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEE-CGGGEE
T ss_pred CccchhhcCccccccCCCCcCCCCCchh-hccccc
Confidence 4589999986 6788899999999 999973
No 81
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=27.45 E-value=25 Score=30.46 Aligned_cols=31 Identities=26% Similarity=0.419 Sum_probs=24.2
Q ss_pred hccccccccccCc-----eeEEEecCCcccccccccC
Q 014396 392 NEKVLCRVCFEGD-----ISVVLLPCRHRILCRYDHL 423 (425)
Q Consensus 392 ~e~~~CkiC~~~~-----~~vv~lPC~H~~~C~~Ca~ 423 (425)
++...|.+|...- ...+-.-|.|.+ |..|..
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~V-C~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNV-CTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEE-ETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCccc-ccccCC
Confidence 3445899997655 577888999998 999974
Done!