Your job contains 1 sequence.
>014397
MDSIKKRKIDENGAVLSDLESPNRLTPQDARKIVERLTSDQLLDVLSSAVARHDDVLESV
RSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFK
HIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKL
LAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLAD
NKKAKPMGPDGGGPGNVSMNHGDGMGMVPPSAGGSYGGPGGHGYPFSGPPPLGHHLNSSL
GGPGQVPSSMGGVGAGGYGAGLGGPYGGYGGPGSTGYGGLGGAGGGAGAGGALGGAAGGL
GGGSSLYRLPPSSAGMPSGGYPEAGHYGLSSTSAGYPSQHHQAAGTSPVPRVPPGGMYPN
VPPYY
The BLAST search returned 11 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 014397
(425 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2086325 - symbol:AT3G15010 species:3702 "Arabi... 927 2.0e-117 2
TAIR|locus:2063177 - symbol:AT2G41060 species:3702 "Arabi... 499 9.8e-48 1
TAIR|locus:2103670 - symbol:UBA2A "UBP1-associated protei... 484 3.8e-46 1
UNIPROTKB|F1Q3G7 - symbol:HNRNPA1 "Uncharacterized protei... 273 7.1e-31 3
UNIPROTKB|E1BEG2 - symbol:HNRNPA3 "Uncharacterized protei... 266 2.3e-30 3
UNIPROTKB|F1NBB6 - symbol:LOC100859627 "Uncharacterized p... 267 4.8e-30 3
UNIPROTKB|E1BZE6 - symbol:LOC100859627 "Uncharacterized p... 267 9.8e-30 3
UNIPROTKB|F1LNG4 - symbol:Hnrnpa3 "Heterogeneous nuclear ... 266 9.8e-30 3
UNIPROTKB|E2RFV7 - symbol:HNRNPA3 "Uncharacterized protei... 266 9.8e-30 3
UNIPROTKB|E7EWI9 - symbol:HNRNPA3 "Heterogeneous nuclear ... 266 9.8e-30 3
UNIPROTKB|P51991 - symbol:HNRNPA3 "Heterogeneous nuclear ... 266 9.8e-30 3
UNIPROTKB|F2Z5B4 - symbol:HNRNPA3 "Uncharacterized protei... 266 9.8e-30 3
RGD|727807 - symbol:Hnrnpa3 "heterogeneous nuclear ribonu... 266 9.8e-30 3
UNIPROTKB|E9PSU5 - symbol:E9PSU5 "Uncharacterized protein... 256 2.5e-29 3
TAIR|locus:2055956 - symbol:UBA1A species:3702 "Arabidops... 314 3.9e-28 1
ZFIN|ZDB-GENE-040426-1546 - symbol:zgc:66127 "zgc:66127" ... 256 4.6e-27 3
UNIPROTKB|Q32P51 - symbol:HNRNPA1L2 "Heterogeneous nuclea... 277 5.8e-27 2
UNIPROTKB|F8VXY0 - symbol:HNRNPA1 "Heterogeneous nuclear ... 272 1.2e-26 2
RGD|2321074 - symbol:LOC100360986 "mCG1035404-like" speci... 266 1.2e-26 2
TAIR|locus:2050992 - symbol:AT2G33410 species:3702 "Arabi... 262 1.5e-26 2
UNIPROTKB|E2QYP1 - symbol:HNRNPA1 "Uncharacterized protei... 272 1.9e-26 2
UNIPROTKB|P09651 - symbol:HNRNPA1 "Heterogeneous nuclear ... 272 1.9e-26 2
UNIPROTKB|D4ACJ7 - symbol:Hnrnpa1 "RCG50547, isoform CRA_... 272 1.9e-26 2
UNIPROTKB|D4ACJ8 - symbol:Hnrnpa1 "Heterogeneous nuclear ... 272 1.9e-26 2
ZFIN|ZDB-GENE-060224-1 - symbol:hnrnpa3 "heterogeneous nu... 264 3.1e-26 2
ZFIN|ZDB-GENE-030912-14 - symbol:hnrnpa1 "heterogeneous n... 264 8.9e-26 2
ZFIN|ZDB-GENE-030131-618 - symbol:hnrnpa0l "heterogeneous... 252 3.5e-25 2
ZFIN|ZDB-GENE-040426-2516 - symbol:zgc:77052 "zgc:77052" ... 249 3.5e-25 2
UNIPROTKB|F6RSR1 - symbol:HNRNPA0 "Uncharacterized protei... 258 4.4e-25 2
UNIPROTKB|E2RBV8 - symbol:HNRNPA0 "Uncharacterized protei... 258 4.4e-25 2
UNIPROTKB|F1RH94 - symbol:HNRNPA0 "Uncharacterized protei... 258 5.6e-25 2
UNIPROTKB|F1NCI5 - symbol:HNRNPA0 "Uncharacterized protei... 257 5.6e-25 2
UNIPROTKB|Q13151 - symbol:HNRNPA0 "Heterogeneous nuclear ... 257 5.6e-25 2
UNIPROTKB|G5E5V7 - symbol:G5E5V7 "Uncharacterized protein... 252 7.1e-25 2
TAIR|locus:2047685 - symbol:AT2G19380 species:3702 "Arabi... 289 1.2e-24 1
UNIPROTKB|F1RX74 - symbol:HNRNPA2B1 "Uncharacterized prot... 256 1.5e-24 2
UNIPROTKB|Q9TTV2 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 252 3.9e-24 2
UNIPROTKB|D4A6A2 - symbol:D4A6A2 "Uncharacterized protein... 276 4.2e-24 1
MGI|MGI:1924384 - symbol:Hnrnpa0 "heterogeneous nuclear r... 253 4.9e-24 2
UNIPROTKB|Q2HJ60 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 249 7.9e-24 2
UNIPROTKB|P09867 - symbol:HNRNPA1 "Heterogeneous nuclear ... 272 1.1e-23 1
UNIPROTKB|F8VRQ1 - symbol:HNRNPA1 "Heterogeneous nuclear ... 272 1.1e-23 1
UNIPROTKB|F8VSB5 - symbol:HNRNPA1 "Heterogeneous nuclear ... 272 1.1e-23 1
UNIPROTKB|F8VZ49 - symbol:HNRNPA1 "Heterogeneous nuclear ... 272 1.1e-23 1
UNIPROTKB|F8W1S7 - symbol:HNRNPA1 "Heterogeneous nuclear ... 272 1.1e-23 1
UNIPROTKB|F8W6I7 - symbol:HNRNPA1 "Heterogeneous nuclear ... 272 1.1e-23 1
UNIPROTKB|Q06A94 - symbol:HNRNPA1 "Uncharacterized protei... 272 1.1e-23 1
UNIPROTKB|A5A6H4 - symbol:HNRNPA1 "Heterogeneous nuclear ... 272 1.1e-23 1
MGI|MGI:104820 - symbol:Hnrnpa1 "heterogeneous nuclear ri... 272 1.1e-23 1
UNIPROTKB|Q5I0M7 - symbol:Hnrnpa1 "Hnrpa1 protein" specie... 272 1.1e-23 1
ZFIN|ZDB-GENE-030131-2249 - symbol:hnrnpa0a "heterogeneou... 243 1.6e-23 2
UNIPROTKB|Q28521 - symbol:HNRNPA1 "Heterogeneous nuclear ... 270 1.8e-23 1
RGD|69234 - symbol:Hnrnpa1 "heterogeneous nuclear ribonuc... 270 1.8e-23 1
TAIR|locus:2055951 - symbol:AT2G22100 species:3702 "Arabi... 265 6.1e-23 1
UNIPROTKB|D4A491 - symbol:D4A491 "Uncharacterized protein... 264 7.8e-23 1
FB|FBgn0001215 - symbol:Hrb98DE "Heterogeneous nuclear ri... 262 1.3e-22 1
UNIPROTKB|J9P972 - symbol:DAZAP1 "Uncharacterized protein... 262 1.3e-22 1
UNIPROTKB|F1LNF1 - symbol:Hnrnpa2b1 "Heterogeneous nuclea... 249 1.6e-22 2
UNIPROTKB|Q3ZC44 - symbol:HNRNPAB "Uncharacterized protei... 261 1.6e-22 1
UNIPROTKB|F1Q1K6 - symbol:HNRNPA2B1 "Uncharacterized prot... 249 1.9e-22 2
UNIPROTKB|P22626 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 249 1.9e-22 2
MGI|MGI:104819 - symbol:Hnrnpa2b1 "heterogeneous nuclear ... 249 1.9e-22 2
UNIPROTKB|F1P5I0 - symbol:LOC100859627 "Uncharacterized p... 260 2.1e-22 1
UNIPROTKB|D6R9P3 - symbol:HNRNPAB "Heterogeneous nuclear ... 259 2.6e-22 1
UNIPROTKB|D6RD18 - symbol:HNRNPAB "Heterogeneous nuclear ... 259 2.6e-22 1
UNIPROTKB|D6RBZ0 - symbol:HNRNPAB "Heterogeneous nuclear ... 259 2.6e-22 1
RGD|1310403 - symbol:Hnrnpa2b1 "heterogeneous nuclear rib... 248 3.2e-22 2
UNIPROTKB|Q9XSY6 - symbol:Q9XSY6 "HnRNP A/B related prote... 258 3.4e-22 1
MGI|MGI:1330294 - symbol:Hnrnpab "heterogeneous nuclear r... 258 3.4e-22 1
RGD|69255 - symbol:Hnrnpab "heterogeneous nuclear ribonuc... 258 3.4e-22 1
UNIPROTKB|E9PTS0 - symbol:Hnrnpab "Protein Hnrnpab" speci... 258 3.4e-22 1
UNIPROTKB|Q9QX80 - symbol:Hnrnpab "Hnrpab protein" specie... 258 3.4e-22 1
UNIPROTKB|Q9QX81 - symbol:Hnrnpab "RCG34663, isoform CRA_... 258 3.4e-22 1
UNIPROTKB|Q99729 - symbol:HNRNPAB "Heterogeneous nuclear ... 258 3.4e-22 1
UNIPROTKB|Q5ZME1 - symbol:HNRNPA2B1 "Uncharacterized prot... 247 4.2e-22 2
UNIPROTKB|Q5RBU8 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 247 6.9e-22 2
WB|WBGene00022235 - symbol:sqd-1 species:6239 "Caenorhabd... 226 7.4e-22 2
TAIR|locus:2077392 - symbol:AT3G07810 species:3702 "Arabi... 260 8.8e-22 1
UNIPROTKB|Q7ZYE9 - symbol:hnrnpab "Hnrpab-prov protein" s... 254 9.0e-22 1
TAIR|locus:2129590 - symbol:AT4G14300 species:3702 "Arabi... 250 1.0e-21 2
POMBASE|SPBC660.15 - symbol:SPBC660.15 "mRNA cleavage fac... 257 1.6e-21 1
ZFIN|ZDB-GENE-070424-97 - symbol:hnrnpd "heterogeneous nu... 250 2.4e-21 1
UNIPROTKB|F1LM82 - symbol:Hnrnpa2b1 "Heterogeneous nuclea... 249 3.0e-21 1
UNIPROTKB|F1NIB2 - symbol:HNRNPAB "Uncharacterized protei... 248 3.9e-21 1
UNIPROTKB|F1NIB4 - symbol:HNRNPAB "Uncharacterized protei... 248 3.9e-21 1
UNIPROTKB|A5D9H5 - symbol:HNRPD "Heterogeneous nuclear ri... 248 3.9e-21 1
UNIPROTKB|F1NCW4 - symbol:HNRNPD "Uncharacterized protein... 247 4.9e-21 1
UNIPROTKB|F1Q2T4 - symbol:F1Q2T4 "Uncharacterized protein... 247 4.9e-21 1
ZFIN|ZDB-GENE-030131-6154 - symbol:hnrnpa0b "heterogeneou... 230 5.9e-21 2
UNIPROTKB|F1M5N1 - symbol:F1M5N1 "Uncharacterized protein... 246 6.3e-21 1
TAIR|locus:2196521 - symbol:AT1G22330 species:3702 "Arabi... 225 7.1e-21 2
UNIPROTKB|H0YA96 - symbol:HNRNPD "Heterogeneous nuclear r... 245 8.0e-21 1
UNIPROTKB|G3V6A4 - symbol:Hnrpd "Protein Hnrpd" species:1... 245 8.0e-21 1
UNIPROTKB|F1LZZ2 - symbol:F1LZZ2 "Uncharacterized protein... 219 9.9e-21 2
UNIPROTKB|D4AD23 - symbol:D4AD23 "Uncharacterized protein... 244 1.0e-20 1
FB|FBgn0004237 - symbol:Hrb87F "Heterogeneous nuclear rib... 243 1.1e-20 2
TAIR|locus:2032120 - symbol:AT1G78260 species:3702 "Arabi... 215 1.2e-20 2
UNIPROTKB|H0Y8G5 - symbol:HNRNPD "Heterogeneous nuclear r... 243 1.3e-20 1
UNIPROTKB|K7EQ02 - symbol:DAZAP1 "DAZ-associated protein ... 243 1.3e-20 1
UNIPROTKB|F1M460 - symbol:F1M460 "Uncharacterized protein... 243 1.3e-20 1
WARNING: Descriptions of 878 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2086325 [details] [associations]
symbol:AT3G15010 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009693
GO:GO:0006952 GO:GO:0005730 GO:GO:0000166 GO:GO:0008219
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0010150 EMBL:AP000370
HSSP:P09651 KO:K12741 eggNOG:NOG300400 EMBL:AY063846 EMBL:AY091228
EMBL:AK316731 IPI:IPI00519744 RefSeq:NP_188119.1 RefSeq:NP_974317.1
UniGene:At.27179 ProteinModelPortal:Q9LKA4 SMR:Q9LKA4 IntAct:Q9LKA4
PaxDb:Q9LKA4 PRIDE:Q9LKA4 EnsemblPlants:AT3G15010.1
EnsemblPlants:AT3G15010.2 GeneID:820730 KEGG:ath:AT3G15010
TAIR:At3g15010 HOGENOM:HOG000090575 InParanoid:Q9LKA4 OMA:MGAQYGG
PhylomeDB:Q9LKA4 ProtClustDB:CLSN2685088 ArrayExpress:Q9LKA4
Genevestigator:Q9LKA4 Uniprot:Q9LKA4
Length = 404
Score = 927 (331.4 bits), Expect = 2.0e-117, Sum P(2) = 2.0e-117
Identities = 189/278 (67%), Positives = 220/278 (79%)
Query: 1 MDSIKKRKIDENGAVLSD----LESPNRLTPQDARKIVERLTSDQLLDVLSSAVARHDDV 56
MD +KKRK+DENG L+ P RL+PQDARKI+ER T+DQLLD+L A+ RH DV
Sbjct: 1 MDMMKKRKLDENGNGLNTNGGGTIGPTRLSPQDARKIIERFTTDQLLDLLQEAIVRHPDV 60
Query: 57 LESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGF 116
LESVR AD+D +QRKLFIRGL DTTTEGLRS+FS+YG+LEEA+VILDK TGKSKGYGF
Sbjct: 61 LESVRLTADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGF 120
Query: 117 ITFKHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMS 176
+TF H+DGA+LALKEPSKKIDGRVTVT LA +GN G + D+S+RKI+V NVP DM
Sbjct: 121 VTFMHVDGALLALKEPSKKIDGRVTVTQLAASGNQGTGSQI-ADISMRKIYVANVPFDMP 179
Query: 177 ADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNC 236
AD+LL HF YG++EEGPLGFDK TGK +GFALFVYKTAEGAQAAL DP+K +DGK LNC
Sbjct: 180 ADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNC 239
Query: 237 RLA-DNKKA-KPMGP---DGG-GPGNVSMNHGDGMGMV 268
+LA D KK KP P DGG G G+V HG+GMGMV
Sbjct: 240 KLAVDGKKGGKPGMPQAQDGGSGHGHV---HGEGMGMV 274
Score = 250 (93.1 bits), Expect = 2.0e-117, Sum P(2) = 2.0e-117
Identities = 49/63 (77%), Positives = 51/63 (80%)
Query: 364 SSLYRLPPSSAGMPSGG-YPEAGHYGLSSTSAGYPSQHHQAAGTSPVPRVPPGGMYPNVP 422
S YR+PPSS MP GG YPE+GHYGLSS SAGYP QHHQA GTSPVPRVP GGMYPN P
Sbjct: 345 SGQYRMPPSS--MPGGGGYPESGHYGLSS-SAGYPGQHHQAVGTSPVPRVPHGGMYPNGP 401
Query: 423 PYY 425
P Y
Sbjct: 402 PNY 404
Score = 41 (19.5 bits), Expect = 2.3e-95, Sum P(2) = 2.3e-95
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 377 PSGGYPEAGHYGLSSTSAGYPSQHH 401
P+G Y AG +G P HH
Sbjct: 276 PAGPYGAAGGISAYGGYSGGPPAHH 300
>TAIR|locus:2063177 [details] [associations]
symbol:AT2G41060 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009693
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006952 GO:GO:0000166
GO:GO:0008219 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0010150
EMBL:AC004261 eggNOG:COG0724 KO:K12741 HSSP:P09012 OMA:CHKANDG
EMBL:AF439844 EMBL:AY133583 EMBL:AK227158 IPI:IPI00545461
PIR:T02113 RefSeq:NP_001078035.1 RefSeq:NP_181639.1
UniGene:At.65764 ProteinModelPortal:O80678 SMR:O80678 IntAct:O80678
STRING:O80678 PaxDb:O80678 PRIDE:O80678 EnsemblPlants:AT2G41060.1
EnsemblPlants:AT2G41060.2 GeneID:818705 KEGG:ath:AT2G41060
TAIR:At2g41060 HOGENOM:HOG000070822 InParanoid:O80678
PhylomeDB:O80678 ProtClustDB:CLSN2683657 ArrayExpress:O80678
Genevestigator:O80678 Uniprot:O80678
Length = 451
Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
Identities = 105/216 (48%), Positives = 136/216 (62%)
Query: 33 IVERLTSDQLLDVLSSAVARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFS 92
++E + DQLL +L A RH DV +R +AD D RK+F+ GLGWDT + L F
Sbjct: 90 LLEPFSKDQLLILLKEAAERHRDVANRIRIVADEDLVHRKIFVHGLGWDTKADSLIDAFK 149
Query: 93 AYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLAVAGN-S 151
YGE+E+ ++DK +G+SKGYGFI FK GA ALK+P KKI R+T LA G
Sbjct: 150 QYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTRMTACQLASIGPVQ 209
Query: 152 GNSTN------NPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPK 205
GN NP +V RKI+V NV D+ KLL F+ +GEIEEGPLG DK TG+PK
Sbjct: 210 GNPVVAPAQHFNPENVQ-RKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPK 268
Query: 206 GFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADN 241
GFALFVY++ E A+ AL +P KT +G L+C A++
Sbjct: 269 GFALFVYRSLESAKKALEEPHKTFEGHVLHCHKAND 304
>TAIR|locus:2103670 [details] [associations]
symbol:UBA2A "UBP1-associated protein 2A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0017091 "AU-rich element
binding" evidence=IDA] [GO:0048255 "mRNA stabilization"
evidence=NAS] [GO:0009738 "abscisic acid mediated signaling
pathway" evidence=TAS] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002686
GO:GO:0009693 GO:GO:0006952 GO:GO:0009738 GO:GO:0000166
GO:GO:0008219 Gene3D:3.30.70.330 GO:GO:0010150 GO:GO:0017091
GO:GO:0048255 EMBL:AL390921 HSSP:Q14103 KO:K12741
ProtClustDB:CLSN2683657 EMBL:AF367280 EMBL:AY037245 EMBL:AY091040
EMBL:AY117351 EMBL:AY133549 EMBL:BT006368 EMBL:AJ439404
IPI:IPI00547983 PIR:T51274 RefSeq:NP_001190109.1
RefSeq:NP_001190110.1 RefSeq:NP_567042.1 RefSeq:NP_850710.1
RefSeq:NP_850711.1 UniGene:At.9845 SMR:Q9LES2 IntAct:Q9LES2
STRING:Q9LES2 EnsemblPlants:AT3G56860.1 EnsemblPlants:AT3G56860.2
EnsemblPlants:AT3G56860.3 EnsemblPlants:AT3G56860.4
EnsemblPlants:AT3G56860.5 GeneID:824853 KEGG:ath:AT3G56860
TAIR:At3g56860 InParanoid:Q9LES2 OMA:ADEDPVH Genevestigator:Q9LES2
Uniprot:Q9LES2
Length = 478
Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
Identities = 102/224 (45%), Positives = 137/224 (61%)
Query: 33 IVERLTSDQLLDVLSSAVARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFS 92
++E + +Q+L +L A +H DV +R +AD DP RK+F+ GLGWDT TE L F
Sbjct: 102 LLEPFSKEQVLSLLKEAAEKHVDVANRIREVADEDPVHRKIFVHGLGWDTKTETLIEAFK 161
Query: 93 AYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLAVAGN-- 150
YGE+E+ + DK +GKSKGYGFI +K GA ALK+P KKI R+T LA G
Sbjct: 162 QYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRMTACQLASKGPVF 221
Query: 151 -----SGNSTNNPVDVS-----LRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQ 200
+ + + P S +KI+V NV ++ KLL F+ +GEIEEGPLG DK
Sbjct: 222 GGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKY 281
Query: 201 TGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA-DNKK 243
TG+PKGF LFVYK++E A+ AL +P KT +G L+C+ A D K
Sbjct: 282 TGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKAIDGPK 325
>UNIPROTKB|F1Q3G7 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
Length = 384
Score = 273 (101.2 bits), Expect = 7.1e-31, Sum P(3) = 7.1e-31
Identities = 72/221 (32%), Positives = 109/221 (49%)
Query: 51 ARHDDVLESVRSIADADPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATG 109
AR D + R + +P Q RKLFI GL ++TT E LRS F +G L + VV+ D T
Sbjct: 16 ARRRD--KKARPKSPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTK 73
Query: 110 KSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVG 169
+S+G+GF+T+ ++ A+ K+DGRV AV+ +S ++++KIFVG
Sbjct: 74 RSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSRE--DSQRPGAHLTVKKIFVG 131
Query: 170 NVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTV 229
+ D L +F YG+IE + D+ +GK +GFA + + ++ TV
Sbjct: 132 GIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTV 191
Query: 230 DGKQLNCRLADNKK--AKPMGPDGG--GPGNVSMNHGDGMG 266
+G R A +K+ A G G GN G G G
Sbjct: 192 NGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFG 232
Score = 51 (23.0 bits), Expect = 7.1e-31, Sum P(3) = 7.1e-31
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 375 GMPSGGYPEAGHYGLSSTSAGYPS 398
G SG Y G YG SS+S+ Y S
Sbjct: 357 GRSSGPYGGGGGYGGSSSSSSYGS 380
Score = 41 (19.5 bits), Expect = 7.1e-31, Sum P(3) = 7.1e-31
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 248 GPDGGGPGNVSMNHGDGMG 266
G GGGPG + G G G
Sbjct: 273 GYGGGGPGYSGGSRGYGSG 291
>UNIPROTKB|E1BEG2 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:DAAA02004160
IPI:IPI00690667 Ensembl:ENSBTAT00000028757 Uniprot:E1BEG2
Length = 380
Score = 266 (98.7 bits), Expect = 2.3e-30, Sum P(3) = 2.3e-30
Identities = 71/208 (34%), Positives = 108/208 (51%)
Query: 67 DPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF---KHI 122
+P Q RKLFI GL ++TT + LR F +G L + VV+ D T +S+G+GF+T+ + +
Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 89
Query: 123 DGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLA 182
D AM A P K +DGRV AV+ +S ++++KIFVG + D L
Sbjct: 90 DAAMCA--RPHK-VDGRVVEPKRAVSRE--DSVKPGAHLTVKKIFVGGIKEDTEEYNLRD 144
Query: 183 HFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNK 242
+F YG+IE + D+Q+GK +GFA + + +V T++G + A +K
Sbjct: 145 YFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSK 204
Query: 243 KA-KPMGPD---GGGPGNVSMNHGDGMG 266
+ + G GGG GN M G G
Sbjct: 205 QEMQSAGSQRGRGGGSGNF-MGRGGNFG 231
Score = 49 (22.3 bits), Expect = 2.3e-30, Sum P(3) = 2.3e-30
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 373 SAGMPSGGYPEAGHYGLSSTSAGYPSQ 399
S G S G P G YG S GY S+
Sbjct: 352 SFGGRSSGSPYGGGYGSGGGSGGYGSR 378
Score = 45 (20.9 bits), Expect = 2.3e-30, Sum P(3) = 2.3e-30
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 248 GPDGGGPGNVSMNHGDGMG 266
G GGGPG N G G G
Sbjct: 288 GYGGGGPGGYG-NQGGGYG 305
>UNIPROTKB|F1NBB6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00818847 Ensembl:ENSGALT00000029498 Uniprot:F1NBB6
Length = 310
Score = 267 (99.0 bits), Expect = 4.8e-30, Sum P(3) = 4.8e-30
Identities = 68/207 (32%), Positives = 105/207 (50%)
Query: 67 DPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGA 125
+P Q RKLFI GL ++TT + LR F +G L + VV+ D T +S+G+GF+T+ ++
Sbjct: 16 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 75
Query: 126 MLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFA 185
A+ K+DGRV AV+ +S ++++KIFVG + D L +F
Sbjct: 76 DAAMSARPHKVDGRVVEPKRAVSRE--DSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFE 133
Query: 186 CYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKK-- 243
YG+IE + D+Q+GK +GFA + + +V T++G + A +K+
Sbjct: 134 KYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEM 193
Query: 244 --AKPMGPDGGGPGNVSM--NHGDGMG 266
A GGG GN N G G G
Sbjct: 194 QTASSQRGRGGGSGNFMGRGNFGGGGG 220
Score = 50 (22.7 bits), Expect = 4.8e-30, Sum P(3) = 4.8e-30
Identities = 12/24 (50%), Positives = 12/24 (50%)
Query: 373 SAGMPSGGYPEAGHYGLSSTSAGY 396
S G S G P G YG S S GY
Sbjct: 282 SFGGRSSGSPYGGGYGSGSGSGGY 305
Score = 40 (19.1 bits), Expect = 4.8e-30, Sum P(3) = 4.8e-30
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 248 GPDGGGPG--NVSMNHGDGMG 266
G GGGPG N +G G G
Sbjct: 218 GGGGGGPGYGNPGGGYGGGGG 238
>UNIPROTKB|E1BZE6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00812068 ProteinModelPortal:E1BZE6
Ensembl:ENSGALT00000038715 Uniprot:E1BZE6
Length = 380
Score = 267 (99.0 bits), Expect = 9.8e-30, Sum P(3) = 9.8e-30
Identities = 68/207 (32%), Positives = 105/207 (50%)
Query: 67 DPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGA 125
+P Q RKLFI GL ++TT + LR F +G L + VV+ D T +S+G+GF+T+ ++
Sbjct: 28 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 87
Query: 126 MLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFA 185
A+ K+DGRV AV+ +S ++++KIFVG + D L +F
Sbjct: 88 DAAMSARPHKVDGRVVEPKRAVSRE--DSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFE 145
Query: 186 CYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKK-- 243
YG+IE + D+Q+GK +GFA + + +V T++G + A +K+
Sbjct: 146 KYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEM 205
Query: 244 --AKPMGPDGGGPGNVSM--NHGDGMG 266
A GGG GN N G G G
Sbjct: 206 QTASSQRGRGGGSGNFMGRGNFGGGGG 232
Score = 50 (22.7 bits), Expect = 9.8e-30, Sum P(3) = 9.8e-30
Identities = 12/24 (50%), Positives = 12/24 (50%)
Query: 373 SAGMPSGGYPEAGHYGLSSTSAGY 396
S G S G P G YG S S GY
Sbjct: 352 SFGGRSSGSPYGGGYGSGSGSGGY 375
Score = 37 (18.1 bits), Expect = 9.8e-30, Sum P(3) = 9.8e-30
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 251 GGGPG--NVSMNHGDGMG 266
GGGPG N +G G G
Sbjct: 291 GGGPGYGNPGGGYGGGGG 308
>UNIPROTKB|F1LNG4 [details] [associations]
symbol:Hnrnpa3 "Heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00567786 Ensembl:ENSRNOT00000050735 ArrayExpress:F1LNG4
Uniprot:F1LNG4
Length = 357
Score = 266 (98.7 bits), Expect = 9.8e-30, Sum P(3) = 9.8e-30
Identities = 71/208 (34%), Positives = 108/208 (51%)
Query: 67 DPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF---KHI 122
+P Q RKLFI GL ++TT + LR F +G L + VV+ D T +S+G+GF+T+ + +
Sbjct: 8 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 67
Query: 123 DGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLA 182
D AM A P K +DGRV AV+ +S ++++KIFVG + D L
Sbjct: 68 DAAMCA--RPHK-VDGRVVEPKRAVSRE--DSVKPGAHLTVKKIFVGGIKEDTEEYNLRD 122
Query: 183 HFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNK 242
+F YG+IE + D+Q+GK +GFA + + +V T++G + A +K
Sbjct: 123 YFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSK 182
Query: 243 KA-KPMGPD---GGGPGNVSMNHGDGMG 266
+ + G GGG GN M G G
Sbjct: 183 QEMQSAGSQRGRGGGSGNF-MGRGGNFG 209
Score = 49 (22.3 bits), Expect = 9.8e-30, Sum P(3) = 9.8e-30
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 373 SAGMPSGGYPEAGHYGLSSTSAGYPSQ 399
S G S G P G YG S GY S+
Sbjct: 329 SFGGRSSGSPYGGGYGSGGGSGGYGSR 355
Score = 39 (18.8 bits), Expect = 9.8e-30, Sum P(3) = 9.8e-30
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 248 GPDGGGPGNVSMNHGDGMG 266
G GGGPG N G G G
Sbjct: 266 GYGGGGPGYG--NQGGGYG 282
Score = 37 (18.1 bits), Expect = 1.6e-29, Sum P(3) = 1.6e-29
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 248 GPDGGGPGNVSMNHGDGMG 266
G GGG G ++G G G
Sbjct: 225 GXYGGGGGGXRSSYGGGDG 243
>UNIPROTKB|E2RFV7 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 GeneTree:ENSGT00700000104376 CTD:220988 OMA:QGHDPKE
EMBL:AAEX03017802 RefSeq:XP_543761.2 ProteinModelPortal:E2RFV7
Ensembl:ENSCAFT00000021410 GeneID:608074 KEGG:cfa:608074
Uniprot:E2RFV7
Length = 378
Score = 266 (98.7 bits), Expect = 9.8e-30, Sum P(3) = 9.8e-30
Identities = 71/208 (34%), Positives = 108/208 (51%)
Query: 67 DPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF---KHI 122
+P Q RKLFI GL ++TT + LR F +G L + VV+ D T +S+G+GF+T+ + +
Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 89
Query: 123 DGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLA 182
D AM A P K +DGRV AV+ +S ++++KIFVG + D L
Sbjct: 90 DAAMCA--RPHK-VDGRVVEPKRAVSRE--DSVKPGAHLTVKKIFVGGIKEDTEEYNLRD 144
Query: 183 HFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNK 242
+F YG+IE + D+Q+GK +GFA + + +V T++G + A +K
Sbjct: 145 YFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSK 204
Query: 243 KA-KPMGPD---GGGPGNVSMNHGDGMG 266
+ + G GGG GN M G G
Sbjct: 205 QEMQSAGSQRGRGGGSGNF-MGRGGNFG 231
Score = 49 (22.3 bits), Expect = 9.8e-30, Sum P(3) = 9.8e-30
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 373 SAGMPSGGYPEAGHYGLSSTSAGYPSQ 399
S G S G P G YG S GY S+
Sbjct: 350 SFGGRSSGSPYGGGYGSGGGSGGYGSR 376
Score = 39 (18.8 bits), Expect = 9.8e-30, Sum P(3) = 9.8e-30
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 248 GPDGGGPGNVSMNHGDGMG 266
G GGGPG N G G G
Sbjct: 287 GYGGGGPGYG--NQGGGYG 303
>UNIPROTKB|E7EWI9 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC079305 HGNC:HGNC:24941
ChiTaRS:HNRNPA3 IPI:IPI00939124 ProteinModelPortal:E7EWI9
SMR:E7EWI9 Ensembl:ENST00000416446 ArrayExpress:E7EWI9 Bgee:E7EWI9
Uniprot:E7EWI9
Length = 322
Score = 266 (98.7 bits), Expect = 9.8e-30, Sum P(3) = 9.8e-30
Identities = 71/208 (34%), Positives = 108/208 (51%)
Query: 67 DPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF---KHI 122
+P Q RKLFI GL ++TT + LR F +G L + VV+ D T +S+G+GF+T+ + +
Sbjct: 8 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 67
Query: 123 DGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLA 182
D AM A P K +DGRV AV+ +S ++++KIFVG + D L
Sbjct: 68 DAAMCA--RPHK-VDGRVVEPKRAVSRE--DSVKPGAHLTVKKIFVGGIKEDTEEYNLRD 122
Query: 183 HFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNK 242
+F YG+IE + D+Q+GK +GFA + + +V T++G + A +K
Sbjct: 123 YFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSK 182
Query: 243 KA-KPMGPD---GGGPGNVSMNHGDGMG 266
+ + G GGG GN M G G
Sbjct: 183 QEMQSAGSQRGRGGGSGNF-MGRGGNFG 209
Score = 49 (22.3 bits), Expect = 9.8e-30, Sum P(3) = 9.8e-30
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 373 SAGMPSGGYPEAGHYGLSSTSAGYPSQ 399
S G S G P G YG S GY S+
Sbjct: 294 SFGGRSSGSPYGGGYGSGGGSGGYGSR 320
Score = 39 (18.8 bits), Expect = 9.8e-30, Sum P(3) = 9.8e-30
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 248 GPDGGGPGNVSMNHGDGMG 266
G GGGPG N G G G
Sbjct: 232 GYGGGGPGYG--NQGGGYG 248
>UNIPROTKB|P51991 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0030529
"ribonucleoprotein complex" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471058
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
EMBL:AC079305 HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF
HPA:HPA001666 EMBL:AY363225 EMBL:BC112027 EMBL:BC113470
IPI:IPI00419373 IPI:IPI00455134 PIR:I52962 RefSeq:NP_919223.1
UniGene:Hs.516539 ProteinModelPortal:P51991 SMR:P51991
IntAct:P51991 MINT:MINT-4999802 STRING:P51991 PhosphoSite:P51991
DMDM:51338779 PaxDb:P51991 PRIDE:P51991 Ensembl:ENST00000392524
Ensembl:ENST00000411529 Ensembl:ENST00000435711 GeneID:220988
KEGG:hsa:220988 UCSC:uc002ulb.1 CTD:220988 GeneCards:GC02P178077
HGNC:HGNC:24941 MIM:605372 neXtProt:NX_P51991 PharmGKB:PA162391169
InParanoid:P51991 OMA:QGHDPKE PhylomeDB:P51991 ChiTaRS:HNRNPA3
GenomeRNAi:220988 NextBio:91133 PMAP-CutDB:P51991
ArrayExpress:P51991 Bgee:P51991 CleanEx:HS_HNRNPA3
Genevestigator:P51991 GermOnline:ENSG00000170144 Uniprot:P51991
Length = 378
Score = 266 (98.7 bits), Expect = 9.8e-30, Sum P(3) = 9.8e-30
Identities = 71/208 (34%), Positives = 108/208 (51%)
Query: 67 DPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF---KHI 122
+P Q RKLFI GL ++TT + LR F +G L + VV+ D T +S+G+GF+T+ + +
Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 89
Query: 123 DGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLA 182
D AM A P K +DGRV AV+ +S ++++KIFVG + D L
Sbjct: 90 DAAMCA--RPHK-VDGRVVEPKRAVSRE--DSVKPGAHLTVKKIFVGGIKEDTEEYNLRD 144
Query: 183 HFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNK 242
+F YG+IE + D+Q+GK +GFA + + +V T++G + A +K
Sbjct: 145 YFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSK 204
Query: 243 KA-KPMGPD---GGGPGNVSMNHGDGMG 266
+ + G GGG GN M G G
Sbjct: 205 QEMQSAGSQRGRGGGSGNF-MGRGGNFG 231
Score = 49 (22.3 bits), Expect = 9.8e-30, Sum P(3) = 9.8e-30
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 373 SAGMPSGGYPEAGHYGLSSTSAGYPSQ 399
S G S G P G YG S GY S+
Sbjct: 350 SFGGRSSGSPYGGGYGSGGGSGGYGSR 376
Score = 39 (18.8 bits), Expect = 9.8e-30, Sum P(3) = 9.8e-30
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 248 GPDGGGPGNVSMNHGDGMG 266
G GGGPG N G G G
Sbjct: 288 GYGGGGPGYG--NQGGGYG 304
>UNIPROTKB|F2Z5B4 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013 KO:K12741
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:CU862048
RefSeq:XP_003133549.1 ProteinModelPortal:F2Z5B4 SMR:F2Z5B4
Ensembl:ENSSSCT00000017409 GeneID:100516520 KEGG:ssc:100516520
Uniprot:F2Z5B4
Length = 379
Score = 266 (98.7 bits), Expect = 9.8e-30, Sum P(3) = 9.8e-30
Identities = 71/208 (34%), Positives = 108/208 (51%)
Query: 67 DPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF---KHI 122
+P Q RKLFI GL ++TT + LR F +G L + VV+ D T +S+G+GF+T+ + +
Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 89
Query: 123 DGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLA 182
D AM A P K +DGRV AV+ +S ++++KIFVG + D L
Sbjct: 90 DAAMCA--RPHK-VDGRVVEPKRAVSRE--DSVKPGAHLTVKKIFVGGIKEDTEEYNLRD 144
Query: 183 HFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNK 242
+F YG+IE + D+Q+GK +GFA + + +V T++G + A +K
Sbjct: 145 YFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSK 204
Query: 243 KA-KPMGPD---GGGPGNVSMNHGDGMG 266
+ + G GGG GN M G G
Sbjct: 205 QEMQSAGSQRGRGGGSGNF-MGRGGNFG 231
Score = 49 (22.3 bits), Expect = 9.8e-30, Sum P(3) = 9.8e-30
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 373 SAGMPSGGYPEAGHYGLSSTSAGYPSQ 399
S G S G P G YG S GY S+
Sbjct: 351 SFGGRSSGSPYGGGYGSGGGSGGYGSR 377
Score = 39 (18.8 bits), Expect = 9.8e-30, Sum P(3) = 9.8e-30
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 248 GPDGGGPGNVSMNHGDGMG 266
G GGGPG N G G G
Sbjct: 288 GYGGGGPGYG--NQGGGYG 304
>RGD|727807 [details] [associations]
symbol:Hnrnpa3 "heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IMP] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0035770
"ribonucleoprotein granule" evidence=IDA] [GO:0043005 "neuron
projection" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IMP] [GO:0051033 "RNA transmembrane transporter activity"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:727807 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043005 GO:GO:0005681
GO:GO:0051028 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF CTD:220988
EMBL:AY363226 EMBL:AY363227 EMBL:BC081878 IPI:IPI00382376
IPI:IPI00464458 RefSeq:NP_001104764.1 RefSeq:NP_001104765.1
RefSeq:NP_937765.1 UniGene:Rn.107690 UniGene:Rn.99947
ProteinModelPortal:Q6URK4 SMR:Q6URK4 STRING:Q6URK4
PhosphoSite:Q6URK4 PRIDE:Q6URK4 GeneID:362152 KEGG:rno:362152
UCSC:RGD:727807 InParanoid:Q6URK4 NextBio:678824
ArrayExpress:Q6URK4 Genevestigator:Q6URK4 GO:GO:0035770
GO:GO:0051033 Uniprot:Q6URK4
Length = 379
Score = 266 (98.7 bits), Expect = 9.8e-30, Sum P(3) = 9.8e-30
Identities = 71/208 (34%), Positives = 108/208 (51%)
Query: 67 DPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF---KHI 122
+P Q RKLFI GL ++TT + LR F +G L + VV+ D T +S+G+GF+T+ + +
Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 89
Query: 123 DGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLA 182
D AM A P K +DGRV AV+ +S ++++KIFVG + D L
Sbjct: 90 DAAMCA--RPHK-VDGRVVEPKRAVSRE--DSVKPGAHLTVKKIFVGGIKEDTEEYNLRD 144
Query: 183 HFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNK 242
+F YG+IE + D+Q+GK +GFA + + +V T++G + A +K
Sbjct: 145 YFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSK 204
Query: 243 KA-KPMGPD---GGGPGNVSMNHGDGMG 266
+ + G GGG GN M G G
Sbjct: 205 QEMQSAGSQRGRGGGSGNF-MGRGGNFG 231
Score = 49 (22.3 bits), Expect = 9.8e-30, Sum P(3) = 9.8e-30
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 373 SAGMPSGGYPEAGHYGLSSTSAGYPSQ 399
S G S G P G YG S GY S+
Sbjct: 351 SFGGRSSGSPYGGGYGSGGGSGGYGSR 377
Score = 39 (18.8 bits), Expect = 9.8e-30, Sum P(3) = 9.8e-30
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 248 GPDGGGPGNVSMNHGDGMG 266
G GGGPG N G G G
Sbjct: 288 GYGGGGPGYG--NQGGGYG 304
>UNIPROTKB|E9PSU5 [details] [associations]
symbol:E9PSU5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00364363 PRIDE:E9PSU5
Ensembl:ENSRNOT00000022054 Uniprot:E9PSU5
Length = 363
Score = 256 (95.2 bits), Expect = 2.5e-29, Sum P(3) = 2.5e-29
Identities = 72/214 (33%), Positives = 109/214 (50%)
Query: 67 DPTQ-RKLFIRGLGWDTTTEGLRSIFSAY-------GELEEAVVILDKATGKSKGYGFIT 118
+P Q RKLFI GL ++TT + LR F + G L + VV+ D T +S+G+GF+T
Sbjct: 8 EPEQLRKLFIGGLSFETTDDSLREHFEGWRDGSEKWGTLTDCVVMRDPQTKRSRGFGFVT 67
Query: 119 F--KHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMS 176
+ + +D AM A P K +DGRV AV+ +S ++++KIFVG + D
Sbjct: 68 YSCEEVDAAMCA--RPHK-VDGRVVEPKRAVSRE--DSVKPGAHLTVKKIFVGGIKEDTG 122
Query: 177 ADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNC 236
L +F YG+IE + D+Q+GK +GFA + + +V T++G
Sbjct: 123 EYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEV 182
Query: 237 RLADNKKA-KPMGPD---GGGPGNVSMNHGDGMG 266
+ A +K+ + G GGG GN M HG G
Sbjct: 183 KKALSKQEMQSAGSQRGCGGGSGNF-MGHGGNFG 215
Score = 53 (23.7 bits), Expect = 2.5e-29, Sum P(3) = 2.5e-29
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 373 SAGMPSGGYPEAGHYGLSSTSAGYPSQ 399
S G S G P G YG S S GY S+
Sbjct: 335 SFGGRSSGSPYGGGYGSGSGSGGYGSR 361
Score = 41 (19.5 bits), Expect = 2.5e-29, Sum P(3) = 2.5e-29
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 248 GPDGGGPG--NVSMNHGDGMG 266
G GGGPG N +G G G
Sbjct: 272 GYGGGGPGYGNQGGGYGGGAG 292
>TAIR|locus:2055956 [details] [associations]
symbol:UBA1A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0017091 "AU-rich
element binding" evidence=IDA] [GO:0048255 "mRNA stabilization"
evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:CP002685
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0048255
IPI:IPI00520548 RefSeq:NP_850021.1 UniGene:At.25483
ProteinModelPortal:F4IIL5 SMR:F4IIL5 EnsemblPlants:AT2G22090.2
GeneID:816744 KEGG:ath:AT2G22090 OMA:WETTRET Uniprot:F4IIL5
Length = 347
Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
Identities = 68/159 (42%), Positives = 95/159 (59%)
Query: 17 SDLESPNRLTPQDARKIVERLTSDQLLDVLSSAVARHDDVLESVRSIADADPTQRKLFIR 76
SD ES N P++ R++++ + DQL+D++ SA + +V AD D T RK+F+
Sbjct: 50 SDSESDNEFDPEELRELLQPYSKDQLVDLVCSASRIGSSIYSAVVEAADRDVTHRKIFVY 109
Query: 77 GLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKI 136
GL W+TT E L +F YGE+EE V++DKATGK+KG+GF+ FK GA ALKEP K+I
Sbjct: 110 GLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRI 169
Query: 137 DGRVTVTNLAVAGN--SGNSTNNPVDVSLRKIFVGNVPN 173
R LA G SG + P V KI +G++ N
Sbjct: 170 LNRTATCQLASMGPAASGKGHDQPGPV---KISMGSMAN 205
Score = 186 (70.5 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 45/108 (41%), Positives = 61/108 (56%)
Query: 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQ 219
DV+ RKIFV +P + + + L+ F YGEIEE + DK TGK KGF ++KT +GA+
Sbjct: 100 DVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAK 159
Query: 220 AALVDPIKTVDGKQLNCRLAD-NKKAKPMGPDGGGPGNVSM----NHG 262
AL +P K + + C+LA A G D GP +SM NHG
Sbjct: 160 EALKEPKKRILNRTATCQLASMGPAASGKGHDQPGPVKISMGSMANHG 207
>ZFIN|ZDB-GENE-040426-1546 [details] [associations]
symbol:zgc:66127 "zgc:66127" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1546 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104376 EMBL:CABZ01055593
EMBL:CABZ01000532 EMBL:CABZ01000533 EMBL:CABZ01000534
EMBL:CABZ01000536 EMBL:CABZ01000539 EMBL:CABZ01000540
EMBL:CABZ01085064 EMBL:CABZ01085065 EMBL:CABZ01085066
EMBL:CABZ01085067 EMBL:CABZ01085068 EMBL:CABZ01088246
EMBL:CABZ01088247 EMBL:CABZ01088248 EMBL:CABZ01088249
EMBL:CABZ01088250 EMBL:CABZ01088251 EMBL:CABZ01092715
EMBL:CABZ01092716 EMBL:CABZ01092717 EMBL:CABZ01092718
IPI:IPI00971841 Ensembl:ENSDART00000082448 Bgee:E7FAB3
Uniprot:E7FAB3
Length = 411
Score = 256 (95.2 bits), Expect = 4.6e-27, Sum P(3) = 4.6e-27
Identities = 68/226 (30%), Positives = 110/226 (48%)
Query: 48 SAVARHDDVLESVRSIADADPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDK 106
SAV+ H S +P Q RKLFI GL ++TT E LR+ F +G L + VV+ D
Sbjct: 15 SAVS-HRVTAMSKEQQTPREPEQLRKLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDP 73
Query: 107 ATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKI 166
T +S+G+GF+T+ + A+ K+DGR AV+ +S+ +++K+
Sbjct: 74 NTKRSRGFGFVTYSSVGEVDAAMDARPHKVDGRAVEPKRAVSRE--DSSKPGAHSTVKKM 131
Query: 167 FVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPI 226
FVG + D + L +F +G+I+E + +K + K +GFA + + ++
Sbjct: 132 FVGGIKEDTDEEHLREYFGQFGKIDEVNIMTEKNSDKRRGFAFITFDDHDAVDRIVIQKY 191
Query: 227 KTVDGKQLNCRLADNKKA------KPMGPDGGGPGNVSMNHGDGMG 266
TV+G R A +++ G GGG G+ N G G G
Sbjct: 192 HTVNGHNCEVRKALSREEMNRVSMNSRGGRGGGGGSGGGNFGRGGG 237
Score = 40 (19.1 bits), Expect = 4.6e-27, Sum P(3) = 4.6e-27
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 248 GPDGGGPGNVSMNHGDGMG 266
G GGGP N N G G G
Sbjct: 275 GYGGGGP-NYGGNRGYGSG 292
Score = 40 (19.1 bits), Expect = 4.6e-27, Sum P(3) = 4.6e-27
Identities = 10/21 (47%), Positives = 10/21 (47%)
Query: 375 GMPSGGYPEAGHYGLSSTSAG 395
G SGG P G YG S G
Sbjct: 369 GGRSGGGPYGGGYGGGSGGGG 389
Score = 38 (18.4 bits), Expect = 7.4e-27, Sum P(3) = 7.4e-27
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 248 GPDGGGPGNVSMNHGDG 264
G GGG GN +G G
Sbjct: 295 GGGGGGYGNQGGGYGGG 311
Score = 38 (18.4 bits), Expect = 7.4e-27, Sum P(3) = 7.4e-27
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 248 GPDGGGPGNVSMNHGDGMG 266
G GGG N + N G G G
Sbjct: 307 GYGGGGYDNYNNNGGGGGG 325
Score = 37 (18.1 bits), Expect = 9.4e-27, Sum P(3) = 9.4e-27
Identities = 9/19 (47%), Positives = 9/19 (47%)
Query: 248 GPDGGGPGNVSMNHGDGMG 266
G GGG G N G G G
Sbjct: 292 GGGGGGGGGYG-NQGGGYG 309
Score = 37 (18.1 bits), Expect = 9.4e-27, Sum P(3) = 9.4e-27
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 248 GPDGGGPGNVSMNHGDGMG 266
G GGG G +G G G
Sbjct: 235 GGGGGGGGGYGGGYGGGGG 253
>UNIPROTKB|Q32P51 [details] [associations]
symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
Uniprot:Q32P51
Length = 320
Score = 277 (102.6 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
Identities = 70/211 (33%), Positives = 105/211 (49%)
Query: 61 RSIADADPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF 119
+S + +P Q RKLFI GL ++TT E LRS F +G L + VV+ D T +S+G+GF+T+
Sbjct: 3 KSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 120 KHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADK 179
++ A+ K+DGRV AV+ +S ++++KIFVG + D
Sbjct: 63 ATVEEVDAAMNTTPHKVDGRVVEPKRAVSRE--DSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 180 LLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA 239
L +F YG+IE + D+ +GK +GFA + + ++ TV G R A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180
Query: 240 DNKK--AKPMGPDGG--GPGNVSMNHGDGMG 266
K+ A G G GN GDG G
Sbjct: 181 LPKQEMASASSSQRGRRGSGNFGGGRGDGFG 211
Score = 41 (19.5 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 385 GHYGLSSTSAGYPS 398
G YG+SS+S+ Y S
Sbjct: 303 GGYGVSSSSSSYGS 316
>UNIPROTKB|F8VXY0 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
Uniprot:F8VXY0
Length = 304
Score = 272 (100.8 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 69/211 (32%), Positives = 106/211 (50%)
Query: 61 RSIADADPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF 119
+S + +P Q RKLFI GL ++TT E LRS F +G L + VV+ D T +S+G+GF+T+
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 120 KHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADK 179
++ A+ K+DGRV AV+ +S ++++KIFVG + D
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSRE--DSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 180 LLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA 239
L +F YG+IE + D+ +GK +GFA + + ++ TV+G R A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 240 DNKK--AKPMGPDGG--GPGNVSMNHGDGMG 266
+K+ A G G GN G G G
Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFG 211
Score = 43 (20.2 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 375 GMPSGGYPEAGHYGLSSTSAGYPSQHHQAAGTSPVPRVPPGGMY 418
G G Y + G+Y S++ G P + G S P GG Y
Sbjct: 238 GGSGGSYNDFGNYNNQSSNFG-PMKGGNFGGRSSGP-YGGGGQY 279
>RGD|2321074 [details] [associations]
symbol:LOC100360986 "mCG1035404-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:2321074 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 IPI:IPI00559028
PRIDE:D4ACQ0 Ensembl:ENSRNOT00000002122 UCSC:RGD:2321074
ArrayExpress:D4ACQ0 Uniprot:D4ACQ0
Length = 320
Score = 266 (98.7 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 71/208 (34%), Positives = 108/208 (51%)
Query: 67 DPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF---KHI 122
+P Q RKLFI GL ++TT + LR F +G L + VV+ D T +S+G+GF+T+ + +
Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 89
Query: 123 DGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLA 182
D AM A P K +DGRV AV+ +S ++++KIFVG + D L
Sbjct: 90 DAAMCA--RPHK-VDGRVVEPKRAVSRE--DSVKPGAHLTVKKIFVGGIKEDTEEYNLRD 144
Query: 183 HFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNK 242
+F YG+IE + D+Q+GK +GFA + + +V T++G + A +K
Sbjct: 145 YFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSK 204
Query: 243 KA-KPMGPD---GGGPGNVSMNHGDGMG 266
+ + G GGG GN M G G
Sbjct: 205 QEMQSAGSQRGRGGGSGNF-MGRGGNFG 231
Score = 49 (22.3 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 373 SAGMPSGGYPEAGHYGLSSTSAGYPSQ 399
S G S G P G YG S GY S+
Sbjct: 292 SFGGRSSGSPYGGGYGSGGGSGGYGSR 318
>TAIR|locus:2050992 [details] [associations]
symbol:AT2G33410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC002332 HOGENOM:HOG000234441 KO:K14411 HSSP:Q61474
ProtClustDB:CLSN2913105 OMA:GNDSSYG EMBL:AY136298 EMBL:BT000416
IPI:IPI00531202 PIR:B84745 RefSeq:NP_180899.1 UniGene:At.22217
ProteinModelPortal:O22791 SMR:O22791 IntAct:O22791 STRING:O22791
PRIDE:O22791 ProMEX:O22791 EnsemblPlants:AT2G33410.1 GeneID:817905
KEGG:ath:AT2G33410 TAIR:At2g33410 InParanoid:O22791
PhylomeDB:O22791 ArrayExpress:O22791 Genevestigator:O22791
Uniprot:O22791
Length = 404
Score = 262 (97.3 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 67/210 (31%), Positives = 106/210 (50%)
Query: 70 QRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAML-A 128
Q KLFI G+ WDT LR FS +GE+ + V+ +KATG+ +G+GF+ F D A++
Sbjct: 5 QGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFS--DPAVIDR 62
Query: 129 LKEPSKKIDGRVTVTNLAV-------AGNSG--NSTNN---PVDVSLRKIFVGNVPNDMS 176
+ + ID R A+ AG SG N++ N +V +KIFVG +P ++
Sbjct: 63 VLQDKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALT 122
Query: 177 ADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNC 236
+D+ A+F YG + + + D+ T +P+GF + + + L ++GKQ+
Sbjct: 123 SDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEV 182
Query: 237 RLADNKKAKPMGPDGGGPGNVSMNHGDGMG 266
+ A K A P GGG G+ G G
Sbjct: 183 KRALPKDANPGIASGGGRGSGGAGGFPGYG 212
Score = 120 (47.3 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 22/74 (29%), Positives = 44/74 (59%)
Query: 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGA 125
A+ +K+F+ GL T++ R+ F YG + +AV+++D+ T + +G+GF++F D
Sbjct: 105 ANVRTKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSV 164
Query: 126 MLALKEPSKKIDGR 139
L L + ++G+
Sbjct: 165 DLVLHKTFHDLNGK 178
Score = 55 (24.4 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 20/54 (37%), Positives = 25/54 (46%)
Query: 371 PSSAGM----PSGGYPEAGH-YGLSSTSAGYPSQHHQAAGTSP-VPRVPPGGMY 418
P SA M S GY G+ YG + +S G PS + G S +P GG Y
Sbjct: 316 PGSAVMGQAGASAGYGSQGYGYGGNDSSYGTPSAYGAVGGRSGNMPNNHGGGGY 369
Score = 46 (21.3 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 248 GPDGGGPGNVSMNHGDG 264
G GG GN+ NHG G
Sbjct: 351 GAVGGRSGNMPNNHGGG 367
Score = 46 (21.3 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 17/50 (34%), Positives = 21/50 (42%)
Query: 378 SGGYPEAGHYGLSSTSAGYPSQHHQAAGTSPVPRVPP-----GGMYPNVP 422
SGG P + G + SAGY SQ + G P GG N+P
Sbjct: 313 SGG-PGSAVMGQAGASAGYGSQGYGYGGNDSSYGTPSAYGAVGGRSGNMP 361
Score = 42 (19.8 bits), Expect = 3.5e-25, Sum P(2) = 3.5e-25
Identities = 19/59 (32%), Positives = 25/59 (42%)
Query: 364 SSLYRLPPSS-AGMPS-GGYPEAGHYGLSSTSAGYPS--QHHQAAGTSPV--PRVPPGG 416
S+ Y P ++ +G P GG YG S GY + AG +P P VP G
Sbjct: 225 SNRYMQPQNTGSGYPPYGGSGYGTGYGYGSNGVGYGGFGGYGNPAG-APYGNPSVPGAG 282
Score = 40 (19.1 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 146 AVAGNSGNSTNN 157
AV G SGN NN
Sbjct: 352 AVGGRSGNMPNN 363
>UNIPROTKB|E2QYP1 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
ProteinModelPortal:E2QYP1 PRIDE:E2QYP1 Ensembl:ENSCAFT00000010628
NextBio:20853043 Uniprot:E2QYP1
Length = 373
Score = 272 (100.8 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 69/211 (32%), Positives = 106/211 (50%)
Query: 61 RSIADADPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF 119
+S + +P Q RKLFI GL ++TT E LRS F +G L + VV+ D T +S+G+GF+T+
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 120 KHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADK 179
++ A+ K+DGRV AV+ +S ++++KIFVG + D
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSRE--DSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 180 LLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA 239
L +F YG+IE + D+ +GK +GFA + + ++ TV+G R A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 240 DNKK--AKPMGPDGG--GPGNVSMNHGDGMG 266
+K+ A G G GN G G G
Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFG 211
Score = 41 (19.5 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 248 GPDGGGPGNVSMNHGDGMG 266
G GGGPG + G G G
Sbjct: 252 GYGGGGPGYSGGSRGYGSG 270
>UNIPROTKB|P09651 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0003727
"single-stranded RNA binding" evidence=IC] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006405 "RNA export from nucleus" evidence=IC]
[GO:0051170 "nuclear import" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0051168 "nuclear
export" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0019048 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0045111 GO:GO:0003697
Pathway_Interaction_DB:ar_pathway GO:GO:0051028 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295
GO:GO:0051170 GO:GO:0006405 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 OMA:IEVEIMT EMBL:X12671 EMBL:X06747
EMBL:X79536 EMBL:AK291113 EMBL:AC078778 EMBL:BC002355 EMBL:BC009600
EMBL:BC012158 EMBL:BC033714 EMBL:BC052296 EMBL:BC070315
EMBL:BC074502 EMBL:BC103707 EMBL:X04347 IPI:IPI00215965
IPI:IPI00465365 IPI:IPI00797148 PIR:S02061 PIR:S12520
RefSeq:NP_002127.1 RefSeq:NP_112420.1 UniGene:Hs.546261
UniGene:Hs.655424 PDB:1HA1 PDB:1L3K PDB:1PGZ PDB:1PO6 PDB:1U1K
PDB:1U1L PDB:1U1M PDB:1U1N PDB:1U1O PDB:1U1P PDB:1U1Q PDB:1U1R
PDB:1UP1 PDB:2H4M PDB:2LYV PDB:2UP1 PDBsum:1HA1 PDBsum:1L3K
PDBsum:1PGZ PDBsum:1PO6 PDBsum:1U1K PDBsum:1U1L PDBsum:1U1M
PDBsum:1U1N PDBsum:1U1O PDBsum:1U1P PDBsum:1U1Q PDBsum:1U1R
PDBsum:1UP1 PDBsum:2H4M PDBsum:2LYV PDBsum:2UP1 DisProt:DP00324
ProteinModelPortal:P09651 SMR:P09651 DIP:DIP-29338N IntAct:P09651
MINT:MINT-1035550 STRING:P09651 PhosphoSite:P09651 DMDM:288558857
SWISS-2DPAGE:P09651 PaxDb:P09651 PRIDE:P09651
Ensembl:ENST00000340913 Ensembl:ENST00000546500
Ensembl:ENST00000547276 Ensembl:ENST00000547566 GeneID:3178
KEGG:hsa:3178 UCSC:uc001sfl.3 UCSC:uc001sfm.3 UCSC:uc001sfn.3
GeneCards:GC12P054674 H-InvDB:HIX0032087 H-InvDB:HIX0040127
H-InvDB:HIX0202582 HGNC:HGNC:5031 HPA:CAB010894 HPA:HPA001666
MIM:164017 neXtProt:NX_P09651 PharmGKB:PA162391113
InParanoid:P09651 PhylomeDB:P09651 BindingDB:P09651
ChEMBL:CHEMBL1955709 ChiTaRS:HNRNPA1 EvolutionaryTrace:P09651
GenomeRNAi:3178 NextBio:12614 ArrayExpress:P09651 Bgee:P09651
CleanEx:HS_HNRNPA1 Genevestigator:P09651 GermOnline:ENSG00000135486
Uniprot:P09651
Length = 372
Score = 272 (100.8 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 69/211 (32%), Positives = 106/211 (50%)
Query: 61 RSIADADPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF 119
+S + +P Q RKLFI GL ++TT E LRS F +G L + VV+ D T +S+G+GF+T+
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 120 KHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADK 179
++ A+ K+DGRV AV+ +S ++++KIFVG + D
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSRE--DSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 180 LLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA 239
L +F YG+IE + D+ +GK +GFA + + ++ TV+G R A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 240 DNKK--AKPMGPDGG--GPGNVSMNHGDGMG 266
+K+ A G G GN G G G
Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFG 211
Score = 41 (19.5 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 248 GPDGGGPGNVSMNHGDGMG 266
G GGGPG + G G G
Sbjct: 252 GYGGGGPGYSGGSRGYGSG 270
>UNIPROTKB|D4ACJ7 [details] [associations]
symbol:Hnrnpa1 "RCG50547, isoform CRA_b" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
EMBL:CH474035 GO:GO:0000380 GO:GO:0051170 OrthoDB:EOG4HQDKF
OMA:IEVEIMT IPI:IPI00781944 SMR:D4ACJ7 Ensembl:ENSRNOT00000055284
Uniprot:D4ACJ7
Length = 373
Score = 272 (100.8 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 69/211 (32%), Positives = 106/211 (50%)
Query: 61 RSIADADPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF 119
+S + +P Q RKLFI GL ++TT E LRS F +G L + VV+ D T +S+G+GF+T+
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 120 KHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADK 179
++ A+ K+DGRV AV+ +S ++++KIFVG + D
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSRE--DSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 180 LLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA 239
L +F YG+IE + D+ +GK +GFA + + ++ TV+G R A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 240 DNKK--AKPMGPDGG--GPGNVSMNHGDGMG 266
+K+ A G G GN G G G
Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFG 211
Score = 41 (19.5 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 248 GPDGGGPGNVSMNHGDGMG 266
G GGGPG + G G G
Sbjct: 252 GYGGGGPGYSGGSRGYGSG 270
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 272 (100.8 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 69/211 (32%), Positives = 106/211 (50%)
Query: 61 RSIADADPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF 119
+S + +P Q RKLFI GL ++TT E LRS F +G L + VV+ D T +S+G+GF+T+
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 120 KHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADK 179
++ A+ K+DGRV AV+ +S ++++KIFVG + D
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSRE--DSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 180 LLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA 239
L +F YG+IE + D+ +GK +GFA + + ++ TV+G R A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 240 DNKK--AKPMGPDGG--GPGNVSMNHGDGMG 266
+K+ A G G GN G G G
Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFG 211
Score = 41 (19.5 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 380 GYPEAGHYGLSSTSAGYPS 398
G+ G YG SS+S+ Y S
Sbjct: 246 GFGNDGGYGGSSSSSSYGS 264
>ZFIN|ZDB-GENE-060224-1 [details] [associations]
symbol:hnrnpa3 "heterogeneous nuclear
ribonucleoprotein A3" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060224-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104376 EMBL:CR848724 IPI:IPI00863016
UniGene:Dr.85855 SMR:B0V1I7 Ensembl:ENSDART00000135273 OMA:IETIDIM
Uniprot:B0V1I7
Length = 312
Score = 264 (98.0 bits), Expect = 3.1e-26, Sum P(2) = 3.1e-26
Identities = 65/207 (31%), Positives = 104/207 (50%)
Query: 67 DPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGA 125
+P Q RKLFI GL ++TT + LR+ F +G+L + VV+ D A +S+G+GF+T+ +
Sbjct: 8 EPEQLRKLFIGGLSFETTEDSLRAHFEQWGKLTDCVVMRDPANKRSRGFGFVTYSSVSEV 67
Query: 126 MLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNP-VDVSLRKIFVGNVPNDMSADKLLAHF 184
A+ K+DGRV AV S +N P ++++KIFVG + D + +F
Sbjct: 68 DAAMTARPHKVDGRVVEPKRAV---SREDSNKPGAHLTVKKIFVGGIKEDTEEYHIREYF 124
Query: 185 ACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKA 244
CYG+IE + ++ TGK +GF + + + T++ R A K+
Sbjct: 125 ECYGKIETIDIMEERSTGKKRGFCFVTFDDHDTVDKIVAQKYHTINSHNCEVRKALPKQE 184
Query: 245 KPMGPD----GGGPGNVSMNHGD-GMG 266
+ GGG GN + G+ G G
Sbjct: 185 MQSSSNQRYRGGGGGNFTGRGGNFGRG 211
Score = 47 (21.6 bits), Expect = 3.1e-26, Sum P(2) = 3.1e-26
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 372 SSAGMPSGGYPEAGHYGLSSTSAGYPSQHHQAAGTSPVPRVPPGGMY 418
SS G G Y + G+YG ++ G P + + G + P GG Y
Sbjct: 253 SSGGGGGGNYNDFGNYGGQQSNFG-PMKGNNFGGRNSGPY--GGGGY 296
>ZFIN|ZDB-GENE-030912-14 [details] [associations]
symbol:hnrnpa1 "heterogeneous nuclear
ribonucleoprotein A1" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030912-14 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 EMBL:BC044442 IPI:IPI00500189
RefSeq:NP_956398.1 UniGene:Dr.67768 ProteinModelPortal:Q803K3
SMR:Q803K3 STRING:Q803K3 PRIDE:Q803K3 GeneID:378453 KEGG:dre:378453
InParanoid:Q803K3 NextBio:20813776 ArrayExpress:Q803K3 Bgee:Q803K3
Uniprot:Q803K3
Length = 422
Score = 264 (98.0 bits), Expect = 8.9e-26, Sum P(2) = 8.9e-26
Identities = 66/209 (31%), Positives = 107/209 (51%)
Query: 50 VARHDDVLESVRSIADADPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKAT 108
VAR + V + +P Q RKLFI GL ++TT + LR+ F +G L + VV+ D T
Sbjct: 11 VARTEIVGRMSKEGQPREPEQLRKLFIGGLSFETTDDSLRAHFEQWGTLTDCVVMKDPNT 70
Query: 109 GKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNP-VDVSLRKIF 167
+S+G+GF+T+ +D ++ K+DGR+ AV S ++ P +++KIF
Sbjct: 71 KRSRGFGFVTYSSVDEVNASMDARPHKVDGRLVEPKRAV---SREDSSKPFAHTTVKKIF 127
Query: 168 VGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIK 227
VG + +D + L +F +G+IE + D +TG +GFA + + ++
Sbjct: 128 VGGIKDDTEENHLRDYFDQFGKIEVVEIMVDHKTGNKRGFAFVTFDDHDSVDRIVIQKYH 187
Query: 228 TVDGKQLNCRLADNKKAKP-MGPDGGGPG 255
TV+G R A +K+ G GGG G
Sbjct: 188 TVNGHNCEVRKALSKQEMANTGRGGGGGG 216
Score = 48 (22.0 bits), Expect = 8.9e-26, Sum P(2) = 8.9e-26
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 248 GPDGGGPGNVSMNHGDGMG 266
G GG PGN N G G G
Sbjct: 290 GNGGGSPGNYGGNRGYGGG 308
Score = 41 (19.5 bits), Expect = 4.8e-25, Sum P(2) = 4.8e-25
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 248 GPDGGGPGNVSMNHGDG 264
GP GGG G S G G
Sbjct: 393 GPYGGGYGGGSSGSGGG 409
Score = 37 (18.1 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 251 GGGPGNVSMNHGDG 264
GGG G + N+G+G
Sbjct: 329 GGGGGYNNYNNGNG 342
Score = 37 (18.1 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 251 GGGPGNVSMNHGDGMG 266
GGG G+ N G G G
Sbjct: 308 GGGGGHGYGNQGGGYG 323
>ZFIN|ZDB-GENE-030131-618 [details] [associations]
symbol:hnrnpa0l "heterogeneous nuclear
ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
Length = 302
Score = 252 (93.8 bits), Expect = 3.5e-25, Sum P(2) = 3.5e-25
Identities = 61/196 (31%), Positives = 98/196 (50%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
KLF+ GL TT EGLR+ F YG+L + VV++++ +S+ +GF+T+ + A A+
Sbjct: 7 KLFVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPLQRSRCFGFVTYSSTEEADAAMSA 66
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
+DG AVA V +KIFVG + +D+ + L +F+ +G IE
Sbjct: 67 RPHIVDGNNVDLKRAVAREDAGKPEMLAKV--KKIFVGGLKDDIEDEHLQDYFSQFGPIE 124
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKA-KPMGPD 250
+ + DK TGK +GF + + A A+V ++ G ++ + A K+ + G
Sbjct: 125 KAQVITDKDTGKKRGFGFVYFDDNDSADKAVVMKFHSICGHKVEVKKALTKQEMQSTGGG 184
Query: 251 GGGPGNVSMNHGDGMG 266
GG G M G G G
Sbjct: 185 RGGRGGRGMGRGSGFG 200
Score = 126 (49.4 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 31/85 (36%), Positives = 43/85 (50%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALK 130
+K+F+ GL D E L+ FS +G +E+A VI DK TGK +G+GF+ F D A A+
Sbjct: 97 KKIFVGGLKDDIEDEHLQDYFSQFGPIEKAQVITDKDTGKKRGFGFVYFDDNDSADKAVV 156
Query: 131 EPSKKIDGRVTVTNLAVAGNSGNST 155
I G A+ ST
Sbjct: 157 MKFHSICGHKVEVKKALTKQEMQST 181
Score = 49 (22.3 bits), Expect = 3.5e-25, Sum P(2) = 3.5e-25
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 380 GY-PEAGHYGLSSTSAGYPSQHHQAAGTSPVPRVPPGG 416
GY +A YG T G S Q++G P PR GG
Sbjct: 254 GYGQQASGYGAMKTGYGNYSSGRQSSG--PYPRGGGGG 289
Score = 38 (18.4 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 370 PPSSAGMPSGGYPEAGHYG 388
P G SGGY G+ G
Sbjct: 283 PRGGGGGGSGGYGRGGYGG 301
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 249 (92.7 bits), Expect = 3.5e-25, Sum P(2) = 3.5e-25
Identities = 62/198 (31%), Positives = 97/198 (48%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+F+ GL WDT+ + L+ FS +GE+ + + +D TG+S+G+GFI FK D L++
Sbjct: 46 KMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKESDSVDRVLQQ 105
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
++DGR A+A PV +KIFVG + + + +K+ +F +GEIE
Sbjct: 106 KEHRLDGRQIDPKRAMA-----IKKEPV----KKIFVGGLNPETTEEKIREYFGSFGEIE 156
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKA---KPMG 248
L D +T K +GF +K + L V G + ++A K+ + G
Sbjct: 157 TIELPTDPKTSKRRGFVFITFKEEFAVKKILEKKYHNVCGSKCEIKIAQPKEIYQQQQFG 216
Query: 249 PDGGGPGNVSMNHGDGMG 266
GGG G G G G
Sbjct: 217 ARGGGFGGRGRGRG-GPG 233
Score = 117 (46.2 bits), Expect = 9.5e-06, Sum P(2) = 9.5e-06
Identities = 29/83 (34%), Positives = 45/83 (54%)
Query: 39 SDQLLDVLSSAVARHDD-VLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGEL 97
SD + VL R D ++ R++A +K+F+ GL +TT E +R F ++GE+
Sbjct: 96 SDSVDRVLQQKEHRLDGRQIDPKRAMAIKKEPVKKIFVGGLNPETTEEKIREYFGSFGEI 155
Query: 98 EEAVVILDKATGKSKGYGFITFK 120
E + D T K +G+ FITFK
Sbjct: 156 ETIELPTDPKTSKRRGFVFITFK 178
Score = 52 (23.4 bits), Expect = 3.5e-25, Sum P(2) = 3.5e-25
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 379 GGYPEAGHYGLSSTSAGYPSQH-HQAAGTSPVPRVPP-GGMYPNVPPY 424
GGY G+Y SS GY S + + G + + P GG PY
Sbjct: 262 GGYGGYGNYDYSSGYYGYGSGYDYTDQGAASYGKTPRRGGHQSGYKPY 309
>UNIPROTKB|F6RSR1 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:DAAA02020383
IPI:IPI00687625 Ensembl:ENSBTAT00000022514 Uniprot:F6RSR1
Length = 310
Score = 258 (95.9 bits), Expect = 4.4e-25, Sum P(2) = 4.4e-25
Identities = 59/193 (30%), Positives = 100/193 (51%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
KLFI GL T+ GLR F A+G L + VV+++ T +S+ +GF+T+ +++ A A+
Sbjct: 13 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 72
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
+DG AV+ +S ++K+FVG + D++ L+ HF+ +G +E
Sbjct: 73 SPHAVDGNTVELKRAVSRE--DSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVE 130
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKPMGPDG 251
+ + DKQ+GK +GF ++ + A A V + G ++ + A K+ G G
Sbjct: 131 KAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIHSG--G 188
Query: 252 GGPGNVSMNHGDG 264
GG G+ S G G
Sbjct: 189 GGGGSRSSRGGRG 201
Score = 124 (48.7 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 38/98 (38%), Positives = 51/98 (52%)
Query: 46 LSSAVARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILD 105
L AV+R D S R A A +KLF+ GL D L FS +G +E+A +I D
Sbjct: 84 LKRAVSRED----SARPGAHAKV--KKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIAD 137
Query: 106 KATGKSKGYGFITFKHIDGAMLALKEPSKKIDG-RVTV 142
K +GK +G+GF+ F++ D A A I G RV V
Sbjct: 138 KQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEV 175
Score = 42 (19.8 bits), Expect = 4.4e-25, Sum P(2) = 4.4e-25
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 372 SSAGMPSGGYPEAGHYGLSS 391
S++G GGY G YG SS
Sbjct: 290 SNSGPYRGGYGGGGGYGGSS 309
>UNIPROTKB|E2RBV8 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0032496 GO:GO:0006954 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0070935 GeneTree:ENSGT00700000104255 CTD:10949
KO:K12894 OMA:GPMKQNL EMBL:AAEX03007810 RefSeq:XP_538645.2
ProteinModelPortal:E2RBV8 Ensembl:ENSCAFT00000001730 GeneID:481524
KEGG:cfa:481524 NextBio:20856300 Uniprot:E2RBV8
Length = 310
Score = 258 (95.9 bits), Expect = 4.4e-25, Sum P(2) = 4.4e-25
Identities = 59/193 (30%), Positives = 100/193 (51%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
KLFI GL T+ GLR F A+G L + VV+++ T +S+ +GF+T+ +++ A A+
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
+DG AV+ +S ++K+FVG + D++ L+ HF+ +G +E
Sbjct: 68 SPHAVDGNTVELKRAVSRE--DSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVE 125
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKPMGPDG 251
+ + DKQ+GK +GF ++ + A A V + G ++ + A K+ G G
Sbjct: 126 KAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIHSG--G 183
Query: 252 GGPGNVSMNHGDG 264
GG G+ S G G
Sbjct: 184 GGGGSRSSRGGRG 196
Score = 124 (48.7 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 38/98 (38%), Positives = 51/98 (52%)
Query: 46 LSSAVARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILD 105
L AV+R D S R A A +KLF+ GL D L FS +G +E+A +I D
Sbjct: 79 LKRAVSRED----SARPGAHAKV--KKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIAD 132
Query: 106 KATGKSKGYGFITFKHIDGAMLALKEPSKKIDG-RVTV 142
K +GK +G+GF+ F++ D A A I G RV V
Sbjct: 133 KQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEV 170
Score = 42 (19.8 bits), Expect = 4.4e-25, Sum P(2) = 4.4e-25
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 372 SSAGMPSGGYPEAGHYGLSS 391
S++G GGY G YG SS
Sbjct: 290 SNSGPYRGGYGGGGGYGGSS 309
>UNIPROTKB|F1RH94 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:CU468422
Ensembl:ENSSSCT00000015648 Uniprot:F1RH94
Length = 315
Score = 258 (95.9 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
Identities = 59/193 (30%), Positives = 100/193 (51%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
KLFI GL T+ GLR F A+G L + VV+++ T +S+ +GF+T+ +++ A A+
Sbjct: 13 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 72
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
+DG AV+ +S ++K+FVG + D++ L+ HF+ +G +E
Sbjct: 73 SPHAVDGNTVELKRAVSRE--DSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVE 130
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKPMGPDG 251
+ + DKQ+GK +GF ++ + A A V + G ++ + A K+ G G
Sbjct: 131 KAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIHSG--G 188
Query: 252 GGPGNVSMNHGDG 264
GG G+ S G G
Sbjct: 189 GGGGSRSSRGGRG 201
Score = 124 (48.7 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 38/98 (38%), Positives = 51/98 (52%)
Query: 46 LSSAVARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILD 105
L AV+R D S R A A +KLF+ GL D L FS +G +E+A +I D
Sbjct: 84 LKRAVSRED----SARPGAHAKV--KKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIAD 137
Query: 106 KATGKSKGYGFITFKHIDGAMLALKEPSKKIDG-RVTV 142
K +GK +G+GF+ F++ D A A I G RV V
Sbjct: 138 KQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEV 175
Score = 41 (19.5 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 372 SSAGMPSGGYPEAGHYGLSSTSAGY 396
S++G GGY G YG +GY
Sbjct: 287 SNSGPYRGGYGGGGGYG-GRCGSGY 310
>UNIPROTKB|F1NCI5 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006954 "inflammatory
response" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0032496 "response to lipopolysaccharide" evidence=IEA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:EDNQHAL EMBL:AADN02028465
IPI:IPI00573116 Ensembl:ENSGALT00000009947 Uniprot:F1NCI5
Length = 328
Score = 257 (95.5 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
Identities = 62/196 (31%), Positives = 98/196 (50%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
KLFI GL TT GLR F+AYG L + VV+L+ T +S+ +GF+T+ ++ A A+
Sbjct: 29 KLFIGGLNVQTTEAGLREHFAAYGTLTDCVVVLNPQTKRSRCFGFVTYSAVEEADAAMAA 88
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
+DG AV+ +S ++K+FVG + D+ L+ HF+ +G +E
Sbjct: 89 SPHAVDGNSVELKRAVSRE--DSAKPGAHAKVKKLFVGGLKGDVGEGDLVQHFSQFGPVE 146
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKPMGPDG 251
+ + DKQ+GK +GF ++ + A A V + G ++ + A K+ G G
Sbjct: 147 KAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIQAG--G 204
Query: 252 GGPGNVSMN-HGDGMG 266
GG S G G G
Sbjct: 205 GGSARPSRGGRGGGRG 220
Score = 119 (46.9 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 37/98 (37%), Positives = 51/98 (52%)
Query: 46 LSSAVARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILD 105
L AV+R D S + A A +KLF+ GL D L FS +G +E+A +I D
Sbjct: 100 LKRAVSRED----SAKPGAHAKV--KKLFVGGLKGDVGEGDLVQHFSQFGPVEKAEIIAD 153
Query: 106 KATGKSKGYGFITFKHIDGAMLALKEPSKKIDG-RVTV 142
K +GK +G+GF+ F++ D A A I G RV V
Sbjct: 154 KQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEV 191
Score = 42 (19.8 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
Identities = 10/24 (41%), Positives = 10/24 (41%)
Query: 375 GMPSGGYPEAGHYGLSSTSAGYPS 398
G GG H GLS GY S
Sbjct: 220 GRGGGGSGNRDHNGLSKGGGGYNS 243
Score = 37 (18.1 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 379 GGYPEAGHYGLSSTSAGYPSQHHQAAG 405
GG G YG G SQH + G
Sbjct: 264 GGGGGGGDYGNGYGGFGSYSQHQSSYG 290
>UNIPROTKB|Q13151 [details] [associations]
symbol:HNRNPA0 "Heterogeneous nuclear ribonucleoprotein A0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISS;TAS] [GO:0006954
"inflammatory response" evidence=ISS] [GO:0032496 "response to
lipopolysaccharide" evidence=ISS] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 EMBL:CH471062 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0030529 GO:GO:0000398 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 HOGENOM:HOG000234442 EMBL:U23803 EMBL:CR456986
EMBL:BC001008 EMBL:BC007271 EMBL:BC009284 EMBL:BC011972
EMBL:BC012980 EMBL:BC018949 EMBL:BC019271 EMBL:BC028976
EMBL:BC030249 IPI:IPI00011913 RefSeq:NP_006796.1 UniGene:Hs.645902
UniGene:Hs.96996 ProteinModelPortal:Q13151 SMR:Q13151 IntAct:Q13151
MINT:MINT-5001237 STRING:Q13151 PhosphoSite:Q13151 DMDM:8134660
REPRODUCTION-2DPAGE:Q13151 SWISS-2DPAGE:Q13151 PaxDb:Q13151
PeptideAtlas:Q13151 PRIDE:Q13151 DNASU:10949
Ensembl:ENST00000314940 GeneID:10949 KEGG:hsa:10949 UCSC:uc003lbt.3
CTD:10949 GeneCards:GC05M137114 HGNC:HGNC:5030 HPA:HPA036569
MIM:609409 neXtProt:NX_Q13151 PharmGKB:PA162391106
InParanoid:Q13151 KO:K12894 OMA:GPMKQNL OrthoDB:EOG4W6NX4
PhylomeDB:Q13151 GenomeRNAi:10949 NextBio:41601 Bgee:Q13151
CleanEx:HS_HNRNPA0 Genevestigator:Q13151 GermOnline:ENSG00000177733
Uniprot:Q13151
Length = 305
Score = 257 (95.5 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
Identities = 59/193 (30%), Positives = 100/193 (51%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
KLFI GL T+ GLR F A+G L + VV+++ T +S+ +GF+T+ +++ A A+
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
+DG AV+ +S ++K+FVG + D++ L+ HF+ +G +E
Sbjct: 68 SPHAVDGNTVELKRAVSRE--DSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVE 125
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKPMGPDG 251
+ + DKQ+GK +GF ++ + A A V + G ++ + A K+ G G
Sbjct: 126 KAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYSG--G 183
Query: 252 GGPGNVSMNHGDG 264
GG G+ S G G
Sbjct: 184 GGGGSRSSRGGRG 196
Score = 124 (48.7 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 38/98 (38%), Positives = 51/98 (52%)
Query: 46 LSSAVARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILD 105
L AV+R D S R A A +KLF+ GL D L FS +G +E+A +I D
Sbjct: 79 LKRAVSRED----SARPGAHAKV--KKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIAD 132
Query: 106 KATGKSKGYGFITFKHIDGAMLALKEPSKKIDG-RVTV 142
K +GK +G+GF+ F++ D A A I G RV V
Sbjct: 133 KQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEV 170
Score = 42 (19.8 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 372 SSAGMPSGGYPEAGHYGLSS 391
S++G GGY G YG SS
Sbjct: 285 SNSGPYRGGYGGGGGYGGSS 304
>UNIPROTKB|G5E5V7 [details] [associations]
symbol:G5E5V7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051170 "nuclear import" evidence=IEA] [GO:0051168 "nuclear
export" evidence=IEA] [GO:0045111 "intermediate filament
cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:DAAA02007960 Ensembl:ENSBTAT00000036150 OMA:ANTMPIL
Uniprot:G5E5V7
Length = 319
Score = 252 (93.8 bits), Expect = 7.1e-25, Sum P(2) = 7.1e-25
Identities = 65/200 (32%), Positives = 100/200 (50%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALK 130
RKLFI GL ++TT E LRS F +G L + VV +D T +S+G+GF+T+ ++ A+
Sbjct: 23 RKLFIGGLSFETTDESLRSHFEQWGMLTDCVV-MDPNTKRSRGFGFVTYTTVEEVDAAMN 81
Query: 131 EPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEI 190
+K+DGRV AV+ +S ++++KIFVG + D L +F YG+I
Sbjct: 82 ARPQKMDGRVVEPKRAVSRE--DSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 139
Query: 191 EEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKK--AKPMG 248
E + D+ +GK +GFA + + ++ T +G R A +K+ A
Sbjct: 140 EVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTGNGHNCEVRKALSKQEMASASS 199
Query: 249 PDGG--GPGNVSMNHGDGMG 266
G G GN G G G
Sbjct: 200 SQRGRSGSGNFGGGRGGGFG 219
Score = 113 (44.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 20/55 (36%), Positives = 33/55 (60%)
Query: 69 TQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHID 123
T +K+F+ G+ DT LR F YG++E ++ D+ +GK +G+ F+TF D
Sbjct: 111 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 165
Score = 46 (21.3 bits), Expect = 7.1e-25, Sum P(2) = 7.1e-25
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 375 GMPSGGYPEA-GHYGLSSTSAGYPS 398
G SG Y + G YG SS+S+ Y S
Sbjct: 291 GRSSGPYGDGEGGYGGSSSSSSYGS 315
>TAIR|locus:2047685 [details] [associations]
symbol:AT2G19380 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003604 InterPro:IPR012677
InterPro:IPR015880 Pfam:PF00076 PROSITE:PS50102 SMART:SM00355
SMART:SM00360 SMART:SM00451 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 EMBL:AC003058 eggNOG:NOG253936 InterPro:IPR014898
Pfam:PF08790 HSSP:Q60900 IPI:IPI00545777 PIR:T01286
RefSeq:NP_565450.1 UniGene:At.50083 ProteinModelPortal:O64571
SMR:O64571 PRIDE:O64571 EnsemblPlants:AT2G19380.1 GeneID:816456
KEGG:ath:AT2G19380 TAIR:At2g19380 HOGENOM:HOG000114996
InParanoid:O64571 OMA:ESADRDI PhylomeDB:O64571
ProtClustDB:CLSN2914947 ArrayExpress:O64571 Genevestigator:O64571
Uniprot:O64571
Length = 613
Score = 289 (106.8 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 62/170 (36%), Positives = 98/170 (57%)
Query: 2 DSIKKRKIDENGAVL-SDLESPNRLTPQDARKIVERLTSDQLLDVLSSAVARHDDVLESV 60
D KKRK D+ SD E +D ++++ + ++L++++ + ++ ++
Sbjct: 342 DKEKKRKKDKKQTKSDSDFEHDK----EDIKQLLVAYSKEELVNLIYKTAEKGSRLISAI 397
Query: 61 RSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFK 120
AD D QR +F+RG GWDTT E L++ F +YGE+EE V++DK TG+ KGYGF+ FK
Sbjct: 398 LESADRDIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFK 457
Query: 121 HIDGAMLALKEPSKKIDGRVTVTNLAVA--GNSGNSTN--NPVDVSLRKI 166
GA ALK P K++ R+ V NLA G +G + PV++ L K+
Sbjct: 458 TRKGAREALKRPEKRMYNRIVVCNLASEKPGKAGKEQDMAEPVNIDLTKM 507
Score = 149 (57.5 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 36/101 (35%), Positives = 52/101 (51%)
Query: 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQ 219
D++ R IFV D + + L F YGEIEE + DK TG+ KG+ ++KT +GA+
Sbjct: 404 DIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAR 463
Query: 220 AALVDPIKTVDGKQLNCRLADNKKAKP-MGPDGGGPGNVSM 259
AL P K + + + C LA K K D P N+ +
Sbjct: 464 EALKRPEKRMYNRIVVCNLASEKPGKAGKEQDMAEPVNIDL 504
>UNIPROTKB|F1RX74 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0050658 "RNA transport" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0050658
GO:GO:0043047 GeneTree:ENSGT00700000104376 OMA:HYSARTS
EMBL:CU469303 Ensembl:ENSSSCT00000017244 Uniprot:F1RX74
Length = 353
Score = 256 (95.2 bits), Expect = 1.5e-24, Sum P(2) = 1.5e-24
Identities = 64/201 (31%), Positives = 101/201 (50%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFK---HIDGAML 127
RKLFI GL ++TT E LR+ + +G+L + VV+ D A+ +S+G+GF+TF +D AM
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 128 ALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACY 187
A P IDGRV AVA V+++K+FVG + D L +F Y
Sbjct: 81 A--RPHS-IDGRVVEPKRAVAREESGKPG--AHVTVKKLFVGGIKEDTEEHHLRDYFEEY 135
Query: 188 GEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCR--LADNKKAK 245
G+++ + D+Q+GK +GF F + + ++ T++G R L+ + +
Sbjct: 136 GKVDTIEIITDRQSGKKRGFGFFTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQE 195
Query: 246 PMGPDGGGPGNVSM--NHGDG 264
G GN +HG G
Sbjct: 196 VQSSRSGRGGNFGFGDSHGGG 216
Score = 118 (46.6 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHID 123
A T +KLF+ G+ DT LR F YG+++ +I D+ +GK +G+GF TF D
Sbjct: 107 AHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKVDTIEIITDRQSGKKRGFGFFTFDDHD 164
Score = 39 (18.8 bits), Expect = 1.5e-24, Sum P(2) = 1.5e-24
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 248 GPDGGGPGNVSMNHGDGMG 266
G GGGPG N G G G
Sbjct: 268 GYGGGGPGYG--NQGGGYG 284
>UNIPROTKB|Q9TTV2 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9490 "Saguinus oedipus" [GO:0030529
"ribonucleoprotein complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0030529 HOVERGEN:HBG002295 HSSP:P22626 EMBL:AF192348
ProteinModelPortal:Q9TTV2 SMR:Q9TTV2 Uniprot:Q9TTV2
Length = 341
Score = 252 (93.8 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
Identities = 64/200 (32%), Positives = 100/200 (50%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFK---HIDGAML 127
RKLFI GL + TT E LR+ + +G+L + VV+ D A+ +S+G+GF+TF +D AM
Sbjct: 9 RKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 128 ALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACY 187
A P IDGRV AVA V+++K+FVG + D L +FA Y
Sbjct: 69 A--RPHS-IDGRVVEPKRAVAREESGKPG--AHVTVKKLFVGGIKEDTEEHHLRDYFAEY 123
Query: 188 GEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA-DNKKAKP 246
G+I+ + D+Q+GK +GF + + ++ T++G R A ++ +
Sbjct: 124 GKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQE 183
Query: 247 MGPDGGGPGNVSMNHGDGMG 266
+ G G + GD G
Sbjct: 184 VQSSRSGRGG-NFGFGDSRG 202
Score = 123 (48.4 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHID 123
A T +KLF+ G+ DT LR F+ YG+++ +I D+ +GK +G+GF+TF D
Sbjct: 95 AHVTVKKLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD 152
Score = 39 (18.8 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 248 GPDGGGPGNVSMNHGDGMG 266
G GGGPG N G G G
Sbjct: 256 GYGGGGPGYG--NQGGGYG 272
Score = 37 (18.1 bits), Expect = 6.2e-24, Sum P(2) = 6.2e-24
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 251 GGGPGNVSMNHGDGMG 266
GGGPG + G G
Sbjct: 236 GGGPGGGNFGGSPGYG 251
Score = 37 (18.1 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 187 YGEIEEGPLGFDKQTGKPKG 206
YG ++ G G + G P G
Sbjct: 301 YGPMKSGNFGGSRNMGGPYG 320
>UNIPROTKB|D4A6A2 [details] [associations]
symbol:D4A6A2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00949070
ProteinModelPortal:D4A6A2 Ensembl:ENSRNOT00000035567 Uniprot:D4A6A2
Length = 232
Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 72/207 (34%), Positives = 109/207 (52%)
Query: 67 DPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF--KHID 123
+P Q RKLFI GL ++TT + LR F +G L + VV+ D T +S+G+GF+T+ + +D
Sbjct: 8 EPEQLRKLFIGGLSFETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEEVD 67
Query: 124 GAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAH 183
AM A P K +DGRV AV+ +S ++++KIFVG + D L +
Sbjct: 68 AAMCA--RPHK-VDGRVVEPKRAVSRE--DSVKPGAHLTVKKIFVGGIKEDTGEYNLRDY 122
Query: 184 FACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKK 243
F YG+IE + D+Q+GK +GFA + + +V T++G + A +K+
Sbjct: 123 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 182
Query: 244 A-KPMGPD---GGGPGNVSMNHGDGMG 266
+ G GGG GN M HG G
Sbjct: 183 EMQSAGSQRGCGGGSGNF-MGHGGNFG 208
>MGI|MGI:1924384 [details] [associations]
symbol:Hnrnpa0 "heterogeneous nuclear ribonucleoprotein A0"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IDA]
[GO:0017091 "AU-rich element binding" evidence=ISO;IDA] [GO:0019901
"protein kinase binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1924384
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 GO:GO:0070935 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 CTD:10949
KO:K12894 OrthoDB:EOG4W6NX4 EMBL:AK019388 EMBL:AC165251
IPI:IPI00109813 RefSeq:NP_084148.1 UniGene:Mm.490274
ProteinModelPortal:Q9CX86 SMR:Q9CX86 STRING:Q9CX86
PhosphoSite:Q9CX86 PaxDb:Q9CX86 PRIDE:Q9CX86
Ensembl:ENSMUST00000007980 GeneID:77134 KEGG:mmu:77134
UCSC:uc007qtf.2 InParanoid:Q9CX86 OMA:EDNQHAL ChiTaRS:HNRNPA0
NextBio:346544 Bgee:Q9CX86 Genevestigator:Q9CX86 Uniprot:Q9CX86
Length = 305
Score = 253 (94.1 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
Identities = 58/195 (29%), Positives = 99/195 (50%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
KLFI GL T+ GLR F A+G L + VV+++ T +S+ +GF+T+ +++ A A+
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
+DG AV+ +S ++K+FVG + D++ L+ HF+ +G +E
Sbjct: 68 SPHAVDGNTVELKRAVSRE--DSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAVE 125
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKPMGPDG 251
+ + DKQ+GK +GF +++ + A A V + G ++ + A K+ G G
Sbjct: 126 KAEIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIHAG--G 183
Query: 252 GGPGNVSMNHGDGMG 266
GG G G G
Sbjct: 184 GGARAARGGRGGGRG 198
Score = 122 (48.0 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
Identities = 38/98 (38%), Positives = 50/98 (51%)
Query: 46 LSSAVARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILD 105
L AV+R D S R A A +KLF+ GL D L FS +G +E+A +I D
Sbjct: 79 LKRAVSRED----SARPGAHAKV--KKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIAD 132
Query: 106 KATGKSKGYGFITFKHIDGAMLALKEPSKKIDG-RVTV 142
K +GK +G+GF+ F+ D A A I G RV V
Sbjct: 133 KQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEV 170
Score = 37 (18.1 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 248 GPDGGGPGNVS-MNHGDGMG 266
G GGG G+ ++G+G G
Sbjct: 237 GGGGGGGGSYGGSDYGNGFG 256
>UNIPROTKB|Q2HJ60 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0043047 "single-stranded
telomeric DNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0030529 GO:GO:0097157 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442
OrthoDB:EOG4HQDKF EMBL:BC113298 IPI:IPI00695201
RefSeq:NP_001039440.1 UniGene:Bt.48137 ProteinModelPortal:Q2HJ60
SMR:Q2HJ60 STRING:Q2HJ60 PRIDE:Q2HJ60 Ensembl:ENSBTAT00000007527
GeneID:507564 KEGG:bta:507564 CTD:3181 GeneTree:ENSGT00700000104376
KO:K13158 OMA:HYSARTS NextBio:20868121 Uniprot:Q2HJ60
Length = 341
Score = 249 (92.7 bits), Expect = 7.9e-24, Sum P(2) = 7.9e-24
Identities = 63/200 (31%), Positives = 100/200 (50%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFK---HIDGAML 127
RKLFI GL ++TT E LR+ + +G+L + VV+ D A+ +S+G+GF+TF +D AM
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 128 ALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACY 187
A P IDGRV AVA V+++K+FVG + D L +F Y
Sbjct: 69 A--RPHS-IDGRVVEPKRAVAREESGKPG--AHVTVKKLFVGGIKEDTEEHHLRDYFEEY 123
Query: 188 GEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA-DNKKAKP 246
G+I+ + D+Q+GK +GF + + ++ T++G R A ++ +
Sbjct: 124 GKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQE 183
Query: 247 MGPDGGGPGNVSMNHGDGMG 266
+ G G + GD G
Sbjct: 184 VQSSRSGRGG-NFGFGDSRG 202
Score = 122 (48.0 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHID 123
A T +KLF+ G+ DT LR F YG+++ +I D+ +GK +G+GF+TF D
Sbjct: 95 AHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD 152
Score = 39 (18.8 bits), Expect = 7.9e-24, Sum P(2) = 7.9e-24
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 248 GPDGGGPGNVSMNHGDGMG 266
G GGGPG N G G G
Sbjct: 256 GYGGGGPGYG--NQGGGYG 272
Score = 37 (18.1 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 251 GGGPGNVSMNHGDGMG 266
GGGPG + G G
Sbjct: 236 GGGPGGGNFGGSPGYG 251
Score = 37 (18.1 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 187 YGEIEEGPLGFDKQTGKPKG 206
YG ++ G G + G P G
Sbjct: 301 YGPMKSGNFGGSRNMGGPYG 320
>UNIPROTKB|P09867 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
Length = 320
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 69/211 (32%), Positives = 106/211 (50%)
Query: 61 RSIADADPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF 119
+S + +P Q RKLFI GL ++TT E LRS F +G L + VV+ D T +S+G+GF+T+
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 120 KHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADK 179
++ A+ K+DGRV AV+ +S ++++KIFVG + D
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSRE--DSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 180 LLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA 239
L +F YG+IE + D+ +GK +GFA + + ++ TV+G R A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 240 DNKK--AKPMGPDGG--GPGNVSMNHGDGMG 266
+K+ A G G GN G G G
Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFG 211
>UNIPROTKB|F8VRQ1 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
Uniprot:F8VRQ1
Length = 307
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 69/211 (32%), Positives = 106/211 (50%)
Query: 61 RSIADADPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF 119
+S + +P Q RKLFI GL ++TT E LRS F +G L + VV+ D T +S+G+GF+T+
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 120 KHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADK 179
++ A+ K+DGRV AV+ +S ++++KIFVG + D
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSRE--DSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 180 LLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA 239
L +F YG+IE + D+ +GK +GFA + + ++ TV+G R A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 240 DNKK--AKPMGPDGG--GPGNVSMNHGDGMG 266
+K+ A G G GN G G G
Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFG 211
>UNIPROTKB|F8VSB5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
Uniprot:F8VSB5
Length = 306
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 69/211 (32%), Positives = 106/211 (50%)
Query: 61 RSIADADPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF 119
+S + +P Q RKLFI GL ++TT E LRS F +G L + VV+ D T +S+G+GF+T+
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 120 KHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADK 179
++ A+ K+DGRV AV+ +S ++++KIFVG + D
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSRE--DSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 180 LLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA 239
L +F YG+IE + D+ +GK +GFA + + ++ TV+G R A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 240 DNKK--AKPMGPDGG--GPGNVSMNHGDGMG 266
+K+ A G G GN G G G
Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFG 211
>UNIPROTKB|F8VZ49 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
Uniprot:F8VZ49
Length = 231
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 68/210 (32%), Positives = 106/210 (50%)
Query: 62 SIADADPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFK 120
+++ +P Q RKLFI GL ++TT E LRS F +G L + VV+ D T +S+G+GF+T+
Sbjct: 23 ALSPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA 82
Query: 121 HIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKL 180
++ A+ K+DGRV AV+ +S ++++KIFVG + D L
Sbjct: 83 TVEEVDAAMNARPHKVDGRVVEPKRAVSRE--DSQRPGAHLTVKKIFVGGIKEDTEEHHL 140
Query: 181 LAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLAD 240
+F YG+IE + D+ +GK +GFA + + ++ TV+G R A
Sbjct: 141 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 200
Query: 241 NKK--AKPMGPDGG--GPGNVSMNHGDGMG 266
+K+ A G G GN G G G
Sbjct: 201 SKQEMASASSSQRGRSGSGNFGGGRGGGFG 230
>UNIPROTKB|F8W1S7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021812 ProteinModelPortal:F8W1S7 SMR:F8W1S7 PRIDE:F8W1S7
Ensembl:ENST00000552591 ArrayExpress:F8W1S7 Bgee:F8W1S7
Uniprot:F8W1S7
Length = 330
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 69/211 (32%), Positives = 106/211 (50%)
Query: 61 RSIADADPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF 119
+S + +P Q RKLFI GL ++TT E LRS F +G L + VV+ D T +S+G+GF+T+
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 120 KHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADK 179
++ A+ K+DGRV AV+ +S ++++KIFVG + D
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSRE--DSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 180 LLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA 239
L +F YG+IE + D+ +GK +GFA + + ++ TV+G R A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 240 DNKK--AKPMGPDGG--GPGNVSMNHGDGMG 266
+K+ A G G GN G G G
Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFG 211
>UNIPROTKB|F8W6I7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
Uniprot:F8W6I7
Length = 320
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 69/211 (32%), Positives = 106/211 (50%)
Query: 61 RSIADADPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF 119
+S + +P Q RKLFI GL ++TT E LRS F +G L + VV+ D T +S+G+GF+T+
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 120 KHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADK 179
++ A+ K+DGRV AV+ +S ++++KIFVG + D
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSRE--DSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 180 LLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA 239
L +F YG+IE + D+ +GK +GFA + + ++ TV+G R A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 240 DNKK--AKPMGPDGG--GPGNVSMNHGDGMG 266
+K+ A G G GN G G G
Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFG 211
>UNIPROTKB|Q06A94 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
Uniprot:Q06A94
Length = 320
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 69/211 (32%), Positives = 106/211 (50%)
Query: 61 RSIADADPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF 119
+S + +P Q RKLFI GL ++TT E LRS F +G L + VV+ D T +S+G+GF+T+
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 120 KHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADK 179
++ A+ K+DGRV AV+ +S ++++KIFVG + D
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSRE--DSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 180 LLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA 239
L +F YG+IE + D+ +GK +GFA + + ++ TV+G R A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 240 DNKK--AKPMGPDGG--GPGNVSMNHGDGMG 266
+K+ A G G GN G G G
Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFG 211
>UNIPROTKB|A5A6H4 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
Uniprot:A5A6H4
Length = 320
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 69/211 (32%), Positives = 106/211 (50%)
Query: 61 RSIADADPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF 119
+S + +P Q RKLFI GL ++TT E LRS F +G L + VV+ D T +S+G+GF+T+
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 120 KHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADK 179
++ A+ K+DGRV AV+ +S ++++KIFVG + D
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSRE--DSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 180 LLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA 239
L +F YG+IE + D+ +GK +GFA + + ++ TV+G R A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 240 DNKK--AKPMGPDGG--GPGNVSMNHGDGMG 266
+K+ A G G GN G G G
Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFG 211
>MGI|MGI:104820 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
GermOnline:ENSMUSG00000058922 Uniprot:P49312
Length = 320
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 69/211 (32%), Positives = 106/211 (50%)
Query: 61 RSIADADPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF 119
+S + +P Q RKLFI GL ++TT E LRS F +G L + VV+ D T +S+G+GF+T+
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 120 KHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADK 179
++ A+ K+DGRV AV+ +S ++++KIFVG + D
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSRE--DSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 180 LLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA 239
L +F YG+IE + D+ +GK +GFA + + ++ TV+G R A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 240 DNKK--AKPMGPDGG--GPGNVSMNHGDGMG 266
+K+ A G G GN G G G
Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFG 211
>UNIPROTKB|Q5I0M7 [details] [associations]
symbol:Hnrnpa1 "Hnrpa1 protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474035 eggNOG:COG0724 HOVERGEN:HBG002295 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00421500
UniGene:Rn.25771 EMBL:BC088150 SMR:Q5I0M7 STRING:Q5I0M7
Ensembl:ENSRNOT00000055285 Genevestigator:Q5I0M7 Uniprot:Q5I0M7
Length = 320
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 69/211 (32%), Positives = 106/211 (50%)
Query: 61 RSIADADPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF 119
+S + +P Q RKLFI GL ++TT E LRS F +G L + VV+ D T +S+G+GF+T+
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 120 KHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADK 179
++ A+ K+DGRV AV+ +S ++++KIFVG + D
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSRE--DSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 180 LLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA 239
L +F YG+IE + D+ +GK +GFA + + ++ TV+G R A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 240 DNKK--AKPMGPDGG--GPGNVSMNHGDGMG 266
+K+ A G G GN G G G
Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFG 211
>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
symbol:hnrnpa0a "heterogeneous nuclear
ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
Length = 305
Score = 243 (90.6 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
Identities = 61/196 (31%), Positives = 99/196 (50%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
KLF+ GL TT +GLR+ F YG+L + VV+ ++ +S+ +GF+T+ D A A+
Sbjct: 11 KLFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSPDEADSAMSA 70
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
+DG AVA V +KIF+G + +D+ D L F+ +G +E
Sbjct: 71 RPHILDGNNVELKRAVAREDAGKPEALAKV--KKIFIGGLKDDIEEDHLRDCFSQFGAVE 128
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKA-KPMGPD 250
+ + DK+TGK +GF ++ + A A+V ++G ++ + A K+ + G
Sbjct: 129 KAEVITDKETGKKRGFGFVYFEDNDSADKAVVLKFHMINGHKVEVKKALTKQEMQAAGSR 188
Query: 251 GGGPGNVSMNHGDGMG 266
GGG G G GMG
Sbjct: 189 GGGRGG--RGGGRGMG 202
Score = 130 (50.8 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 36/93 (38%), Positives = 50/93 (53%)
Query: 46 LSSAVARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILD 105
L AVAR D ++A +K+FI GL D + LR FS +G +E+A VI D
Sbjct: 82 LKRAVARED--AGKPEALAKV----KKIFIGGLKDDIEEDHLRDCFSQFGAVEKAEVITD 135
Query: 106 KATGKSKGYGFITFKHIDGAMLALKEPSKKIDG 138
K TGK +G+GF+ F+ D A A+ I+G
Sbjct: 136 KETGKKRGFGFVYFEDNDSADKAVVLKFHMING 168
Score = 42 (19.8 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 380 GYPEAGH-YGLSSTSAGYPSQHHQAAGTSPVPRVPPGGMY 418
GY + G YG S+ G ++ +P R GG Y
Sbjct: 257 GYNDFGSGYGQQSSGYGPMKGNYSGRSNAPYSRGGGGGGY 296
Score = 37 (18.1 bits), Expect = 5.4e-23, Sum P(2) = 5.4e-23
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 371 PSSAGMPSGGYPEAGHYG 388
P S G GGY G+ G
Sbjct: 286 PYSRGGGGGGYGRGGYGG 303
>UNIPROTKB|Q28521 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9544 "Macaca mulatta" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
EMBL:M84334 PIR:S30192 RefSeq:NP_001036248.1 UniGene:Mmu.4980
ProteinModelPortal:Q28521 SMR:Q28521 STRING:Q28521 PRIDE:Q28521
GeneID:702977 KEGG:mcc:702977 InParanoid:Q28521 NextBio:19966247
Uniprot:Q28521
Length = 320
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 69/211 (32%), Positives = 105/211 (49%)
Query: 61 RSIADADPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF 119
+S + +P Q RKLFI GL ++TT E LRS F +G L + VV+ D T +S+G+GF+T+
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 120 KHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADK 179
++ A+ K+DGRV AV+ +S ++++KIFVG + D
Sbjct: 63 ATVEKVDAAMNARPHKVDGRVVEPKRAVSRE--DSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 180 LLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA 239
L +F YG+IE + D+ +GK +GFA + ++ TV+G R A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 240 DNKK--AKPMGPDGG--GPGNVSMNHGDGMG 266
+K+ A G G GN G G G
Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFG 211
>RGD|69234 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;ISS;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISO]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0045111
"intermediate filament cytoskeleton" evidence=ISO] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0051168 "nuclear export"
evidence=ISO;ISS] [GO:0051170 "nuclear import" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0016070 GO:GO:0051028
GO:GO:0051168 eggNOG:COG0724 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 InterPro:IPR021662 Pfam:PF11627
CTD:3178 EMBL:M12156 IPI:IPI00421500 PIR:A38304 RefSeq:NP_058944.1
UniGene:Rn.25771 ProteinModelPortal:P04256 SMR:P04256 IntAct:P04256
STRING:P04256 PhosphoSite:P04256 PRIDE:P04256 GeneID:29578
KEGG:rno:29578 UCSC:RGD:69234 NextBio:609678 ArrayExpress:P04256
Genevestigator:P04256 GermOnline:ENSRNOG00000036839 Uniprot:P04256
Length = 320
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 68/211 (32%), Positives = 104/211 (49%)
Query: 61 RSIADADPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF 119
+S + +P Q RKLFI GL ++TT E LRS F +G L + VV+ D T +S+G+GF+T+
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 120 KHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADK 179
++ A+ K+DGRV AV+ +S ++++KIFVG + D
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSRE--DSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 180 LLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCR-- 237
L +F YG+IE + D+ +GK +GFA + + ++ TV+G R
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 238 LADNKKAKPMGPDGG--GPGNVSMNHGDGMG 266
L + A G G GN G G G
Sbjct: 181 LCKQEMASASSSQRGRSGSGNFGGGRGGGFG 211
>TAIR|locus:2055951 [details] [associations]
symbol:AT2G22100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002685
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007232
HSSP:Q14103 ProtClustDB:CLSN2914947 IPI:IPI00529413 PIR:A84609
RefSeq:NP_565526.1 UniGene:At.39482 ProteinModelPortal:Q9SHZ5
SMR:Q9SHZ5 EnsemblPlants:AT2G22100.1 GeneID:816745
KEGG:ath:AT2G22100 TAIR:At2g22100 InParanoid:Q9SHZ5 OMA:VFESADR
PhylomeDB:Q9SHZ5 ArrayExpress:Q9SHZ5 Genevestigator:Q9SHZ5
Uniprot:Q9SHZ5
Length = 382
Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
Identities = 57/160 (35%), Positives = 91/160 (56%)
Query: 15 VLSDLESPNRLTPQDARKIVERLTSDQLLDVLSSAVARHDDVLESVRSIADADPTQRKLF 74
V + +S +D + ++E + ++L++++ + ++ +V AD D +QR +F
Sbjct: 107 VTIESDSDFEFDKEDIKNLLESYSKEELINLIYKTAEKGSKLISAVFESADRDSSQRNIF 166
Query: 75 IRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSK 134
+RGLGWDTT E L++ F YGE+ E V++DK TG++KG+GF+ FK GA ALK P K
Sbjct: 167 VRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNPEK 226
Query: 135 KIDGRVTVTNL-AVAGNSGNSTNNPVDVSLRKIFVGNVPN 173
++ R TV+ L A NSG V KI + + N
Sbjct: 227 RMYNR-TVSCLPARPFNSGKPREQQQPVESVKIDLSHTGN 265
Score = 145 (56.1 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 32/77 (41%), Positives = 46/77 (59%)
Query: 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQ 219
D S R IFV + D + + L A F YGEI E + DK TG+ KGF ++KT +GA+
Sbjct: 159 DSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGAR 218
Query: 220 AALVDPIKTVDGKQLNC 236
AAL +P K + + ++C
Sbjct: 219 AALKNPEKRMYNRTVSC 235
>UNIPROTKB|D4A491 [details] [associations]
symbol:D4A491 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
IPI:IPI00560785 ProteinModelPortal:D4A491
Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
Length = 239
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 67/202 (33%), Positives = 103/202 (50%)
Query: 67 DPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGA 125
+P Q RKLFI GL ++TT E LRS F +G L + VV+ D T +S+G+GF+T+ ++
Sbjct: 2 EPEQVRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 61
Query: 126 MLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFA 185
A+ K++GRV AV+ +S ++++KIFVG + D L +F
Sbjct: 62 DAAMNARPHKVNGRVVEPKRAVSRE--DSQRPDAYLTVKKIFVGGIKEDTEEHHLRDYFG 119
Query: 186 CYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAK 245
YG+ E + D+ +GK +GFA + + ++ TV+G NC + +KA
Sbjct: 120 QYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIVIQKYHTVNGH--NCEV---RKA- 173
Query: 246 PMGPDG-GGPGNVSMNHGDGMG 266
P G G GN G G G
Sbjct: 174 PSNQRGRSGSGNFGGGRGGGFG 195
Score = 119 (46.9 bits), Expect = 7.8e-05, P = 7.8e-05
Identities = 26/90 (28%), Positives = 43/90 (47%)
Query: 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDG 124
DA T +K+F+ G+ DT LR F YG+ E ++ D+ +GK +G+ F+TF D
Sbjct: 92 DAYLTVKKIFVGGIKEDTEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDS 151
Query: 125 AMLALKEPSKKIDGRVTVTNLAVAGNSGNS 154
+ + ++G A + G S
Sbjct: 152 VDKIVIQKYHTVNGHNCEVRKAPSNQRGRS 181
>FB|FBgn0001215 [details] [associations]
symbol:Hrb98DE "Heterogeneous nuclear ribonucleoprotein at
98DE" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005703 "polytene chromosome
puff" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0045727 "positive regulation of translation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0036099 "female germ-line
stem cell maintenance" evidence=IMP] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0043565 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0048027 GO:GO:0030529 GO:GO:0033119
GO:GO:0045727 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 GO:GO:0036099 KO:K12741
OrthoDB:EOG46WWRF EMBL:M15766 EMBL:M25545 EMBL:M28871 EMBL:M28872
EMBL:M33955 EMBL:M31560 EMBL:M28870 EMBL:AY061448 PIR:A26459
RefSeq:NP_524543.1 RefSeq:NP_733249.1 RefSeq:NP_733250.1
RefSeq:NP_733251.1 RefSeq:NP_733252.1 RefSeq:NP_733253.1
UniGene:Dm.7147 ProteinModelPortal:P07909 SMR:P07909 DIP:DIP-19217N
IntAct:P07909 MINT:MINT-764040 STRING:P07909 PaxDb:P07909
PRIDE:P07909 EnsemblMetazoa:FBtr0085300 EnsemblMetazoa:FBtr0085301
GeneID:43385 KEGG:dme:Dmel_CG9983 CTD:43385 FlyBase:FBgn0001215
InParanoid:P07909 OMA:INIVIDK PhylomeDB:P07909 ChiTaRS:Hrb98DE
GenomeRNAi:43385 NextBio:833644 Bgee:P07909 GermOnline:CG9983
Uniprot:P07909
Length = 365
Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 72/205 (35%), Positives = 104/205 (50%)
Query: 53 HDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSK 112
HDD SI + + RKLFI GL + TT E L++ F +G + + VV+ D T +S+
Sbjct: 15 HDDDFPQ-DSITEPEH-MRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSR 72
Query: 113 GYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVP 172
G+GFIT+ H A K KIDGRV AV +S N +++K+FVG +
Sbjct: 73 GFGFITYSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSPN--AGATVKKLFVGALK 130
Query: 173 NDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGK 232
+D + +F +G I + + DK+TGK +GFA + + VD +
Sbjct: 131 DDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDP-----VDKVVLQKQH 185
Query: 233 QLNCRLADNKKAKPMGPD--GGGPG 255
QLN ++ D KKA P D GGG G
Sbjct: 186 QLNGKMVDVKKALPKQNDQQGGGGG 210
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 66/209 (31%), Positives = 103/209 (49%)
Query: 47 SSAVARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDK 106
+S H V S R A A RKLF+ GL W TT E LRS FS YGE+ + V++ DK
Sbjct: 35 TSGAPSHSSV--SARKAAQA--ALRKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDK 90
Query: 107 ATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKI 166
T +S+G+GF+ FK + L +DGR + S NS +N KI
Sbjct: 91 TTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGR-NIDPKQKGPRSDNSKSN-------KI 142
Query: 167 FVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPI 226
FVG +P++ +L +F +G + E + +D + +P+GF ++ + A+
Sbjct: 143 FVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHF 202
Query: 227 KTVDGKQLNCRLADNKKAKPMGPDGGGPG 255
+ GK++ + A+ + +K P G PG
Sbjct: 203 HDIMGKKVEVKRAEPRDSKSQAP--GQPG 229
>UNIPROTKB|F1LNF1 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310403
GO:GO:0005730 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 GO:GO:0050658 GO:GO:0043047
GeneTree:ENSGT00700000104376 OMA:HYSARTS IPI:IPI00867934
ProteinModelPortal:F1LNF1 Ensembl:ENSRNOT00000015152
ArrayExpress:F1LNF1 Uniprot:F1LNF1
Length = 352
Score = 249 (92.7 bits), Expect = 1.6e-22, Sum P(2) = 1.6e-22
Identities = 63/200 (31%), Positives = 100/200 (50%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFK---HIDGAML 127
RKLFI GL ++TT E LR+ + +G+L + VV+ D A+ +S+G+GF+TF +D AM
Sbjct: 20 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 79
Query: 128 ALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACY 187
A P IDGRV AVA V+++K+FVG + D L +F Y
Sbjct: 80 A--RPHS-IDGRVVEPKRAVAREESGKPG--AHVTVKKLFVGGIKEDTEEHHLRDYFEEY 134
Query: 188 GEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA-DNKKAKP 246
G+I+ + D+Q+GK +GF + + ++ T++G R A ++ +
Sbjct: 135 GKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQE 194
Query: 247 MGPDGGGPGNVSMNHGDGMG 266
+ G G + GD G
Sbjct: 195 VQSSRSGRGG-NFGFGDSRG 213
Score = 122 (48.0 bits), Expect = 8.7e-05, Sum P(2) = 8.7e-05
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHID 123
A T +KLF+ G+ DT LR F YG+++ +I D+ +GK +G+GF+TF D
Sbjct: 106 AHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD 163
Score = 39 (18.8 bits), Expect = 1.6e-22, Sum P(2) = 1.6e-22
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 248 GPDGGGPGNVSMNHGDGMG 266
G GGGPG N G G G
Sbjct: 267 GYGGGGPGYG--NQGGGYG 283
Score = 37 (18.1 bits), Expect = 2.6e-22, Sum P(2) = 2.6e-22
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 251 GGGPGNVSMNHGDGMG 266
GGGPG + G G
Sbjct: 247 GGGPGGGNFGGSPGYG 262
Score = 37 (18.1 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 187 YGEIEEGPLGFDKQTGKPKG 206
YG ++ G G + G P G
Sbjct: 312 YGPMKSGNFGGSRNMGGPYG 331
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 62/197 (31%), Positives = 100/197 (50%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+F+ GL WDT+ + L+ F+ +GE+ + + +D TG+S+G+GFI FK L +
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEKVLDQ 130
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
++DGRV A+A +PV +KIFVG + + + +K+ +F +GEIE
Sbjct: 131 KEHRLDGRVIDPKKAMA-----MKKDPV----KKIFVGGLNPEATEEKIREYFGEFGEIE 181
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKPMGPDG 251
L D ++ K +GF +K E + L T+ G + ++A K+ G
Sbjct: 182 AIELPMDPKSNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKCEIKVAQPKEVYQQQQYG 241
Query: 252 -GGPGNVSM-NHGDGMG 266
GG GN + N G G G
Sbjct: 242 SGGRGNRNRGNRGSGGG 258
Score = 114 (45.2 bits), Expect = 0.00046, P = 0.00046
Identities = 30/96 (31%), Positives = 50/96 (52%)
Query: 45 VLSSAVARHDD-VLESVRSIA-DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVV 102
VL R D V++ +++A DP +K+F+ GL + T E +R F +GE+E +
Sbjct: 127 VLDQKEHRLDGRVIDPKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIEL 185
Query: 103 ILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDG 138
+D + K +G+ FITFK + L++ I G
Sbjct: 186 PMDPKSNKRRGFVFITFKEEEPVKKVLEKKFHTISG 221
>UNIPROTKB|F1Q1K6 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:HYSARTS EMBL:AAEX03009384
Ensembl:ENSCAFT00000004622 Uniprot:F1Q1K6
Length = 353
Score = 249 (92.7 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 63/200 (31%), Positives = 100/200 (50%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFK---HIDGAML 127
RKLFI GL ++TT E LR+ + +G+L + VV+ D A+ +S+G+GF+TF +D AM
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 128 ALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACY 187
A P IDGRV AVA V+++K+FVG + D L +F Y
Sbjct: 81 A--RPHS-IDGRVVEPKRAVAREESGKPG--AHVTVKKLFVGGIKEDTEEHHLRDYFEEY 135
Query: 188 GEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA-DNKKAKP 246
G+I+ + D+Q+GK +GF + + ++ T++G R A ++ +
Sbjct: 136 GKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQE 195
Query: 247 MGPDGGGPGNVSMNHGDGMG 266
+ G G + GD G
Sbjct: 196 VQSSRSGRGG-NFGFGDSRG 214
Score = 122 (48.0 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHID 123
A T +KLF+ G+ DT LR F YG+++ +I D+ +GK +G+GF+TF D
Sbjct: 107 AHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD 164
Score = 39 (18.8 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 248 GPDGGGPGNVSMNHGDGMG 266
G GGGPG N G G G
Sbjct: 268 GYGGGGPGYG--NQGGGYG 284
Score = 37 (18.1 bits), Expect = 3.0e-22, Sum P(2) = 3.0e-22
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 251 GGGPGNVSMNHGDGMG 266
GGGPG + G G
Sbjct: 248 GGGPGGGNFGGSPGYG 263
Score = 37 (18.1 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 187 YGEIEEGPLGFDKQTGKPKG 206
YG ++ G G + G P G
Sbjct: 313 YGPMKSGNFGGSRNMGGPYG 332
>UNIPROTKB|P22626 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0097157 "pre-mRNA intronic
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0050658 "RNA transport" evidence=IDA] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0050658 eggNOG:COG0724 GO:GO:0043047
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
HPA:HPA001666 CTD:3181 KO:K13158 OMA:HYSARTS EMBL:M29064
EMBL:M29065 EMBL:U09123 EMBL:U09120 EMBL:U09121 EMBL:U09122
EMBL:D28877 EMBL:AK289429 IPI:IPI00396378 IPI:IPI00414696
PIR:A56845 RefSeq:NP_002128.1 RefSeq:NP_112533.1 UniGene:Hs.487774
PDB:1X4B PDBsum:1X4B ProteinModelPortal:P22626 SMR:P22626
IntAct:P22626 MINT:MINT-4998934 STRING:P22626 PhosphoSite:P22626
DMDM:133257 REPRODUCTION-2DPAGE:IPI00396378
REPRODUCTION-2DPAGE:IPI00414696 REPRODUCTION-2DPAGE:P22626
SWISS-2DPAGE:P22626 UCD-2DPAGE:P22626 PaxDb:P22626 PRIDE:P22626
Ensembl:ENST00000354667 Ensembl:ENST00000356674
Ensembl:ENST00000360787 GeneID:3181 KEGG:hsa:3181 UCSC:uc003sxr.4
UCSC:uc003sxs.4 GeneCards:GC07M026229 HGNC:HGNC:5033 HPA:CAB012403
MIM:600124 neXtProt:NX_P22626 PharmGKB:PA162391140 PhylomeDB:P22626
ChiTaRS:HNRNPA2B1 EvolutionaryTrace:P22626 GenomeRNAi:3181
NextBio:12622 PMAP-CutDB:P22626 Bgee:P22626 CleanEx:HS_HNRNPA2B1
Genevestigator:P22626 GermOnline:ENSG00000122566 Uniprot:P22626
Length = 353
Score = 249 (92.7 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 63/200 (31%), Positives = 100/200 (50%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFK---HIDGAML 127
RKLFI GL ++TT E LR+ + +G+L + VV+ D A+ +S+G+GF+TF +D AM
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 128 ALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACY 187
A P IDGRV AVA V+++K+FVG + D L +F Y
Sbjct: 81 A--RPHS-IDGRVVEPKRAVAREESGKPG--AHVTVKKLFVGGIKEDTEEHHLRDYFEEY 135
Query: 188 GEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA-DNKKAKP 246
G+I+ + D+Q+GK +GF + + ++ T++G R A ++ +
Sbjct: 136 GKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQE 195
Query: 247 MGPDGGGPGNVSMNHGDGMG 266
+ G G + GD G
Sbjct: 196 VQSSRSGRGG-NFGFGDSRG 214
Score = 122 (48.0 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHID 123
A T +KLF+ G+ DT LR F YG+++ +I D+ +GK +G+GF+TF D
Sbjct: 107 AHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD 164
Score = 39 (18.8 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 248 GPDGGGPGNVSMNHGDGMG 266
G GGGPG N G G G
Sbjct: 268 GYGGGGPGYG--NQGGGYG 284
Score = 37 (18.1 bits), Expect = 3.0e-22, Sum P(2) = 3.0e-22
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 251 GGGPGNVSMNHGDGMG 266
GGGPG + G G
Sbjct: 248 GGGPGGGNFGGSPGYG 263
Score = 37 (18.1 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 187 YGEIEEGPLGFDKQTGKPKG 206
YG ++ G G + G P G
Sbjct: 313 YGPMKSGNFGGSRNMGGPYG 332
>MGI|MGI:104819 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein
A2/B1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0050658 "RNA transport" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104819 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0097157 GO:GO:0050658 GO:GO:0048025
eggNOG:COG0724 GO:GO:0043047 HOVERGEN:HBG002295 OrthoDB:EOG4HQDKF
CTD:3181 GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS
ChiTaRS:HNRNPA2B1 EMBL:AF406651 EMBL:AF452567 EMBL:AF073990
EMBL:AF073993 EMBL:AK089012 EMBL:AK137214 EMBL:BC059107
EMBL:BC141253 IPI:IPI00405058 IPI:IPI00622847 IPI:IPI00828488
RefSeq:NP_058086.2 RefSeq:NP_872591.1 RefSeq:XP_001473875.2
UniGene:Mm.155896 ProteinModelPortal:O88569 SMR:O88569
IntAct:O88569 STRING:O88569 PhosphoSite:O88569
REPRODUCTION-2DPAGE:IPI00405058 REPRODUCTION-2DPAGE:O88569
SWISS-2DPAGE:O88569 PaxDb:O88569 PRIDE:O88569
Ensembl:ENSMUST00000069949 Ensembl:ENSMUST00000090002
Ensembl:ENSMUST00000114459 GeneID:100045191 GeneID:53379
KEGG:mmu:100045191 KEGG:mmu:53379 UCSC:uc009bxm.1 UCSC:uc009bxn.1
NextBio:458663 Bgee:O88569 CleanEx:MM_HNRNPA2B1
Genevestigator:O88569 GermOnline:ENSMUSG00000004980 Uniprot:O88569
Length = 353
Score = 249 (92.7 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 63/200 (31%), Positives = 100/200 (50%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFK---HIDGAML 127
RKLFI GL ++TT E LR+ + +G+L + VV+ D A+ +S+G+GF+TF +D AM
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 128 ALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACY 187
A P IDGRV AVA V+++K+FVG + D L +F Y
Sbjct: 81 A--RPHS-IDGRVVEPKRAVAREESGKPG--AHVTVKKLFVGGIKEDTEEHHLRDYFEEY 135
Query: 188 GEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA-DNKKAKP 246
G+I+ + D+Q+GK +GF + + ++ T++G R A ++ +
Sbjct: 136 GKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQE 195
Query: 247 MGPDGGGPGNVSMNHGDGMG 266
+ G G + GD G
Sbjct: 196 VQSSRSGRGG-NFGFGDSRG 214
Score = 122 (48.0 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHID 123
A T +KLF+ G+ DT LR F YG+++ +I D+ +GK +G+GF+TF D
Sbjct: 107 AHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD 164
Score = 39 (18.8 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 248 GPDGGGPGNVSMNHGDGMG 266
G GGGPG N G G G
Sbjct: 268 GYGGGGPGYG--NQGGGYG 284
Score = 37 (18.1 bits), Expect = 3.0e-22, Sum P(2) = 3.0e-22
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 251 GGGPGNVSMNHGDGMG 266
GGGPG + G G
Sbjct: 248 GGGPGGGNFGGSPGYG 263
Score = 37 (18.1 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 187 YGEIEEGPLGFDKQTGKPKG 206
YG ++ G G + G P G
Sbjct: 313 YGPMKSGNFGGSRNMGGPYG 332
>UNIPROTKB|F1P5I0 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00971390 Ensembl:ENSGALT00000015053 Uniprot:F1P5I0
Length = 288
Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
Identities = 67/206 (32%), Positives = 104/206 (50%)
Query: 67 DPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGA 125
+P Q RKLFI GL ++TT + LR F +G L + VV+ D T +S+G+GF+T+ ++
Sbjct: 4 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 63
Query: 126 MLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFA 185
A+ K+DGRV AV+ +S ++++KIFVG + D L +F
Sbjct: 64 DAAMSARPHKVDGRVVEPKRAVSRE--DSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFE 121
Query: 186 CYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAK 245
YG+IE + D+Q+GK +GFA + + +V T++G + A +K+
Sbjct: 122 KYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEM 181
Query: 246 PMGPD--G-GGPGNVSM--NHGDGMG 266
G GG GN N G G G
Sbjct: 182 QTASSQRGKGGSGNFMGRGNFGGGGG 207
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 63/197 (31%), Positives = 99/197 (50%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+F+ GL WDT+ + L+ F+ +GE+ + + +D TG+S+G+GFI FK L +
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
++DGRV A+A +PV +KIFVG + + + +K+ +F +GEIE
Sbjct: 131 KEHRLDGRVIDPKKAMA-----MKKDPV----KKIFVGGLNPEATEEKIREYFGEFGEIE 181
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKPMGPDG 251
L D + K +GF +K E + L TV G + ++A K+ G
Sbjct: 182 AIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYG 241
Query: 252 -GGPGNVSM-NHGDGMG 266
GG GN + N G G G
Sbjct: 242 SGGRGNRNRGNRGSGGG 258
Score = 111 (44.1 bits), Expect = 0.00098, P = 0.00098
Identities = 29/96 (30%), Positives = 49/96 (51%)
Query: 45 VLSSAVARHDD-VLESVRSIA-DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVV 102
VL R D V++ +++A DP +K+F+ GL + T E +R F +GE+E +
Sbjct: 127 VLDQKEHRLDGRVIDPKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIEL 185
Query: 103 ILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDG 138
+D K +G+ FITFK + L++ + G
Sbjct: 186 PMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSG 221
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 63/197 (31%), Positives = 99/197 (50%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+F+ GL WDT+ + L+ F+ +GE+ + + +D TG+S+G+GFI FK L +
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
++DGRV A+A +PV +KIFVG + + + +K+ +F +GEIE
Sbjct: 131 KEHRLDGRVIDPKKAMA-----MKKDPV----KKIFVGGLNPEATEEKIREYFGEFGEIE 181
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKPMGPDG 251
L D + K +GF +K E + L TV G + ++A K+ G
Sbjct: 182 AIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYG 241
Query: 252 -GGPGNVSM-NHGDGMG 266
GG GN + N G G G
Sbjct: 242 SGGRGNRNRGNRGSGGG 258
Score = 111 (44.1 bits), Expect = 0.0010, P = 0.0010
Identities = 29/96 (30%), Positives = 49/96 (51%)
Query: 45 VLSSAVARHDD-VLESVRSIA-DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVV 102
VL R D V++ +++A DP +K+F+ GL + T E +R F +GE+E +
Sbjct: 127 VLDQKEHRLDGRVIDPKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIEL 185
Query: 103 ILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDG 138
+D K +G+ FITFK + L++ + G
Sbjct: 186 PMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSG 221
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 63/197 (31%), Positives = 99/197 (50%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+F+ GL WDT+ + L+ F+ +GE+ + + +D TG+S+G+GFI FK L +
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
++DGRV A+A +PV +KIFVG + + + +K+ +F +GEIE
Sbjct: 131 KEHRLDGRVIDPKKAMA-----MKKDPV----KKIFVGGLNPEATEEKIREYFGEFGEIE 181
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKPMGPDG 251
L D + K +GF +K E + L TV G + ++A K+ G
Sbjct: 182 AIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYG 241
Query: 252 -GGPGNVSM-NHGDGMG 266
GG GN + N G G G
Sbjct: 242 SGGRGNRNRGNRGSGGG 258
>RGD|1310403 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein A2/B1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA;ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IEA;ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0050658 "RNA transport" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310403 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 GO:GO:0071013 GO:GO:0050658
eggNOG:COG0724 GO:GO:0043047 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
CTD:3181 KO:K13158 EMBL:AB006815 EMBL:AB006816 EMBL:AB006817
EMBL:AB006818 IPI:IPI00212969 IPI:IPI00867934 IPI:IPI00923129
IPI:IPI00923135 RefSeq:NP_001098083.1 UniGene:Rn.231911
ProteinModelPortal:A7VJC2 SMR:A7VJC2 STRING:A7VJC2 PRIDE:A7VJC2
GeneID:362361 KEGG:rno:362361 UCSC:RGD:1310403 HOVERGEN:HBG108415
InParanoid:A7VJC2 NextBio:679650 ArrayExpress:A7VJC2
Genevestigator:A7VJC2 Uniprot:A7VJC2
Length = 353
Score = 248 (92.4 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
Identities = 63/200 (31%), Positives = 99/200 (49%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFK---HIDGAML 127
RKLFI GL ++TT E LR+ + +G+L + VV+ D A+ +S+G+GF+TF +D AM
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 128 ALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACY 187
A P IDGRV AVA V+++K+FVG + D L +F Y
Sbjct: 81 A--RPHS-IDGRVVEPKRAVAREESGKPG--AHVTVKKLFVGGIKEDTEEHHLRDYFEEY 135
Query: 188 GEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA-DNKKAKP 246
G+I+ + D+Q+GK +GF + + + T++G R A ++ +
Sbjct: 136 GKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIFLQKYHTINGHNAEVRKALSRQEMQE 195
Query: 247 MGPDGGGPGNVSMNHGDGMG 266
+ G G + GD G
Sbjct: 196 VQSSRSGRGG-NFGFGDSRG 214
Score = 122 (48.0 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHID 123
A T +KLF+ G+ DT LR F YG+++ +I D+ +GK +G+GF+TF D
Sbjct: 107 AHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD 164
Score = 39 (18.8 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 248 GPDGGGPGNVSMNHGDGMG 266
G GGGPG N G G G
Sbjct: 268 GYGGGGPGYG--NQGGGYG 284
Score = 37 (18.1 bits), Expect = 5.1e-22, Sum P(2) = 5.1e-22
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 251 GGGPGNVSMNHGDGMG 266
GGGPG + G G
Sbjct: 248 GGGPGGGNFGGSPGYG 263
Score = 37 (18.1 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 187 YGEIEEGPLGFDKQTGKPKG 206
YG ++ G G + G P G
Sbjct: 313 YGPMKSGNFGGSRNMGGPYG 332
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 63/197 (31%), Positives = 99/197 (50%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+F+ GL WDT+ + L+ F+ +GE+ + + + TG+SKG+GFI FK L +
Sbjct: 65 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKGFGFILFKDAASVEKVLDQ 124
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
++DGRV A+A +PV +KIFVG + + + +K+ +F +GEIE
Sbjct: 125 KEHRLDGRVIDPKKAMA-----MKKDPV----KKIFVGGLNPEATEEKIREYFGEFGEIE 175
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKPMGPDG 251
L D +T K +GF +K E + L T+ G + ++A K+ G
Sbjct: 176 AIELPMDPKTNKRRGFVFITFKEEEPVKKVLEKKFHTISGSKCEIKVAQPKEVYQQQQYG 235
Query: 252 -GGPGNVSM-NHGDGMG 266
GG GN + N G G G
Sbjct: 236 SGGRGNRNRGNRGSGGG 252
Score = 118 (46.6 bits), Expect = 0.00016, P = 0.00016
Identities = 31/96 (32%), Positives = 50/96 (52%)
Query: 45 VLSSAVARHDD-VLESVRSIA-DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVV 102
VL R D V++ +++A DP +K+F+ GL + T E +R F +GE+E +
Sbjct: 121 VLDQKEHRLDGRVIDPKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIEL 179
Query: 103 ILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDG 138
+D T K +G+ FITFK + L++ I G
Sbjct: 180 PMDPKTNKRRGFVFITFKEEEPVKKVLEKKFHTISG 215
>MGI|MGI:1330294 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
replication origin binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
GermOnline:ENSMUSG00000020358 Uniprot:Q99020
Length = 285
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 62/197 (31%), Positives = 99/197 (50%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+F+ GL WDT+ + L+ F+ +GE+ + + +D TG+S+G+GFI FK L +
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
++DGRV A+A +PV +KIFVG + + + +K+ +F +GEIE
Sbjct: 136 KEHRLDGRVIDPKKAMA-----MKKDPV----KKIFVGGLNPEATEEKIREYFGQFGEIE 186
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKPMGPDG 251
L D + K +GF +K + + L TV G + ++A K+ G
Sbjct: 187 AIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYG 246
Query: 252 -GGPGNVSM-NHGDGMG 266
GG GN + N G G G
Sbjct: 247 SGGRGNRNRGNRGSGGG 263
Score = 116 (45.9 bits), Expect = 0.00027, P = 0.00027
Identities = 31/102 (30%), Positives = 51/102 (50%)
Query: 39 SDQLLDVLSSAVARHDD-VLESVRSIA-DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGE 96
S + VL R D V++ +++A DP +K+F+ GL + T E +R F +GE
Sbjct: 126 SSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGQFGE 184
Query: 97 LEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDG 138
+E + +D K +G+ FITFK D L++ + G
Sbjct: 185 IEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSG 226
>RGD|69255 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
Uniprot:Q9Z0U8
Length = 298
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 62/197 (31%), Positives = 99/197 (50%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+F+ GL WDT+ + L+ F+ +GE+ + + +D TG+S+G+GFI FK L +
Sbjct: 89 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 148
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
++DGRV A+A +PV +KIFVG + + + +K+ +F +GEIE
Sbjct: 149 KEHRLDGRVIDPKKAMA-----MKKDPV----KKIFVGGLNPEATEEKIREYFGQFGEIE 199
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKPMGPDG 251
L D + K +GF +K + + L TV G + ++A K+ G
Sbjct: 200 AIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYG 259
Query: 252 -GGPGNVSM-NHGDGMG 266
GG GN + N G G G
Sbjct: 260 SGGRGNRNRGNRGSGGG 276
Score = 116 (45.9 bits), Expect = 0.00030, P = 0.00030
Identities = 31/102 (30%), Positives = 51/102 (50%)
Query: 39 SDQLLDVLSSAVARHDD-VLESVRSIA-DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGE 96
S + VL R D V++ +++A DP +K+F+ GL + T E +R F +GE
Sbjct: 139 SSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGQFGE 197
Query: 97 LEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDG 138
+E + +D K +G+ FITFK D L++ + G
Sbjct: 198 IEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSG 239
>UNIPROTKB|E9PTS0 [details] [associations]
symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
Length = 331
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 62/197 (31%), Positives = 99/197 (50%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+F+ GL WDT+ + L+ F+ +GE+ + + +D TG+S+G+GFI FK L +
Sbjct: 75 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 134
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
++DGRV A+A +PV +KIFVG + + + +K+ +F +GEIE
Sbjct: 135 KEHRLDGRVIDPKKAMA-----MKKDPV----KKIFVGGLNPEATEEKIREYFGQFGEIE 185
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKPMGPDG 251
L D + K +GF +K + + L TV G + ++A K+ G
Sbjct: 186 AIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYG 245
Query: 252 -GGPGNVSM-NHGDGMG 266
GG GN + N G G G
Sbjct: 246 SGGRGNRNRGNRGSGGG 262
Score = 116 (45.9 bits), Expect = 0.00037, P = 0.00037
Identities = 31/102 (30%), Positives = 51/102 (50%)
Query: 39 SDQLLDVLSSAVARHDD-VLESVRSIA-DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGE 96
S + VL R D V++ +++A DP +K+F+ GL + T E +R F +GE
Sbjct: 125 SSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGQFGE 183
Query: 97 LEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDG 138
+E + +D K +G+ FITFK D L++ + G
Sbjct: 184 IEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSG 225
>UNIPROTKB|Q9QX80 [details] [associations]
symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
Genevestigator:Q9QX80 Uniprot:Q9QX80
Length = 285
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 62/197 (31%), Positives = 99/197 (50%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+F+ GL WDT+ + L+ F+ +GE+ + + +D TG+S+G+GFI FK L +
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
++DGRV A+A +PV +KIFVG + + + +K+ +F +GEIE
Sbjct: 136 KEHRLDGRVIDPKKAMA-----MKKDPV----KKIFVGGLNPEATEEKIREYFGQFGEIE 186
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKPMGPDG 251
L D + K +GF +K + + L TV G + ++A K+ G
Sbjct: 187 AIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYG 246
Query: 252 -GGPGNVSM-NHGDGMG 266
GG GN + N G G G
Sbjct: 247 SGGRGNRNRGNRGSGGG 263
Score = 116 (45.9 bits), Expect = 0.00027, P = 0.00027
Identities = 31/102 (30%), Positives = 51/102 (50%)
Query: 39 SDQLLDVLSSAVARHDD-VLESVRSIA-DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGE 96
S + VL R D V++ +++A DP +K+F+ GL + T E +R F +GE
Sbjct: 126 SSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGQFGE 184
Query: 97 LEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDG 138
+E + +D K +G+ FITFK D L++ + G
Sbjct: 185 IEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSG 226
>UNIPROTKB|Q9QX81 [details] [associations]
symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
Uniprot:Q9QX81
Length = 332
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 62/197 (31%), Positives = 99/197 (50%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+F+ GL WDT+ + L+ F+ +GE+ + + +D TG+S+G+GFI FK L +
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
++DGRV A+A +PV +KIFVG + + + +K+ +F +GEIE
Sbjct: 136 KEHRLDGRVIDPKKAMA-----MKKDPV----KKIFVGGLNPEATEEKIREYFGQFGEIE 186
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKPMGPDG 251
L D + K +GF +K + + L TV G + ++A K+ G
Sbjct: 187 AIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYG 246
Query: 252 -GGPGNVSM-NHGDGMG 266
GG GN + N G G G
Sbjct: 247 SGGRGNRNRGNRGSGGG 263
Score = 116 (45.9 bits), Expect = 0.00038, P = 0.00038
Identities = 31/102 (30%), Positives = 51/102 (50%)
Query: 39 SDQLLDVLSSAVARHDD-VLESVRSIA-DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGE 96
S + VL R D V++ +++A DP +K+F+ GL + T E +R F +GE
Sbjct: 126 SSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGQFGE 184
Query: 97 LEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDG 138
+E + +D K +G+ FITFK D L++ + G
Sbjct: 185 IEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSG 226
>UNIPROTKB|Q99729 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0001837
EMBL:CH471165 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K13044 InterPro:IPR012956 Pfam:PF08143
EMBL:M65028 EMBL:U76713 EMBL:AK054600 EMBL:AK097657 EMBL:BC001616
EMBL:BC002625 EMBL:BC004561 EMBL:BC009359 EMBL:BC036708
IPI:IPI00106509 IPI:IPI00329355 IPI:IPI00334587 IPI:IPI00334713
PIR:S17563 RefSeq:NP_004490.2 RefSeq:NP_112556.2 UniGene:Hs.591731
UniGene:Hs.715055 PDB:3S7R PDBsum:3S7R ProteinModelPortal:Q99729
SMR:Q99729 IntAct:Q99729 MINT:MINT-4537784 STRING:Q99729
PhosphoSite:Q99729 DMDM:158523286 SWISS-2DPAGE:Q99729 PaxDb:Q99729
PRIDE:Q99729 Ensembl:ENST00000355836 Ensembl:ENST00000358344
Ensembl:ENST00000504898 Ensembl:ENST00000506259 GeneID:3182
KEGG:hsa:3182 UCSC:uc003miu.3 UCSC:uc003miv.3 CTD:3182
GeneCards:GC05P177631 HGNC:HGNC:5034 HPA:HPA046688 MIM:602688
neXtProt:NX_Q99729 PharmGKB:PA162391196 InParanoid:Q99729
OMA:FILFKDP OrthoDB:EOG42BX9K ChiTaRS:HNRNPAB
EvolutionaryTrace:Q99729 GenomeRNAi:3182 NextBio:12628
ArrayExpress:Q99729 Bgee:Q99729 CleanEx:HS_HNRNPAB
Genevestigator:Q99729 GermOnline:ENSG00000197451 Uniprot:Q99729
Length = 332
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 64/198 (32%), Positives = 99/198 (50%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+F+ GL WDT+ + L+ F+ +GE+ + + +D TG+S+G+GFI FK L +
Sbjct: 70 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 129
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNV-PNDMSADKLLAHFACYGEI 190
++DGRV A+A +PV +KIFVG + P + +K+ +F +GEI
Sbjct: 130 KEHRLDGRVIDPKKAMA-----MKKDPV----KKIFVGGLNPESPTEEKIREYFGEFGEI 180
Query: 191 EEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKPMGPD 250
E L D + K +GF +K E + L TV G + ++A K+
Sbjct: 181 EAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQY 240
Query: 251 G-GGPGNVSM-NHGDGMG 266
G GG GN + N G G G
Sbjct: 241 GSGGRGNRNRGNRGSGGG 258
>UNIPROTKB|Q5ZME1 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0097157 GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF CTD:3181
GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS EMBL:AC140791
EMBL:AJ719443 IPI:IPI00651336 RefSeq:NP_001026156.1
UniGene:Gga.22131 SMR:Q5ZME1 IntAct:Q5ZME1 STRING:Q5ZME1
Ensembl:ENSGALT00000017975 GeneID:420627 KEGG:gga:420627
InParanoid:Q5ZME1 NextBio:20823513 Uniprot:Q5ZME1
Length = 349
Score = 247 (92.0 bits), Expect = 4.2e-22, Sum P(2) = 4.2e-22
Identities = 63/200 (31%), Positives = 100/200 (50%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFK---HIDGAML 127
RKLFI GL ++TT E LR+ + +G+L + VV+ D A+ +S+G+GF+TF +D AM
Sbjct: 17 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 76
Query: 128 ALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACY 187
A P IDGRV AVA V+++K+FVG + D L +F Y
Sbjct: 77 A--RPHT-IDGRVVEPKRAVAREESGKPG--AHVTVKKLFVGGIKEDTEEHHLRDYFEEY 131
Query: 188 GEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA-DNKKAKP 246
G+I+ + D+Q+GK +GF + + ++ T++G R A ++ +
Sbjct: 132 GKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQE 191
Query: 247 MGPDGGGPGNVSMNHGDGMG 266
+ G G + GD G
Sbjct: 192 VQNSRSGRGG-NFGFGDARG 210
Score = 122 (48.0 bits), Expect = 8.5e-05, Sum P(2) = 8.5e-05
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHID 123
A T +KLF+ G+ DT LR F YG+++ +I D+ +GK +G+GF+TF D
Sbjct: 103 AHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD 160
Score = 39 (18.8 bits), Expect = 4.2e-22, Sum P(2) = 4.2e-22
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 248 GPDGGGPGNVSMNHGDGMG 266
G GGGPG N G G G
Sbjct: 264 GYGGGGPGYG--NQGGGYG 280
Score = 37 (18.1 bits), Expect = 6.8e-22, Sum P(2) = 6.8e-22
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 251 GGGPGNVSMNHGDGMG 266
GGGPG + G G
Sbjct: 244 GGGPGGGNFGGSPGYG 259
Score = 37 (18.1 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 187 YGEIEEGPLGFDKQTGKPKG 206
YG ++ G G + G P G
Sbjct: 309 YGPMKSGNFGGSRNMGGPYG 328
>UNIPROTKB|Q5RBU8 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
Length = 353
Score = 247 (92.0 bits), Expect = 6.9e-22, Sum P(2) = 6.9e-22
Identities = 63/200 (31%), Positives = 100/200 (50%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFK---HIDGAML 127
RKLFI GL ++TT E LR+ + +G+L + VV+ D A+ +S+G+GF+TF +D AM
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 128 ALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACY 187
A P IDGRV AVA V+++K+FVG + D L +F Y
Sbjct: 81 A--RPHS-IDGRVVEPKRAVAREESGKPG--AHVTVKKLFVGGIKEDTEEHHLRDYFEEY 135
Query: 188 GEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA-DNKKAKP 246
G+I+ + D+Q+GK +GF + + ++ T++G R A ++ +
Sbjct: 136 GKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKHHTINGHNAEVRKALSRQEMQE 195
Query: 247 MGPDGGGPGNVSMNHGDGMG 266
+ G G + GD G
Sbjct: 196 VQSSRSGRGG-NFGFGDSRG 214
Score = 122 (48.0 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHID 123
A T +KLF+ G+ DT LR F YG+++ +I D+ +GK +G+GF+TF D
Sbjct: 107 AHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD 164
Score = 39 (18.8 bits), Expect = 6.9e-22, Sum P(2) = 6.9e-22
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 248 GPDGGGPGNVSMNHGDGMG 266
G GGGPG N G G G
Sbjct: 268 GYGGGGPGYG--NQGGGYG 284
Score = 37 (18.1 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 251 GGGPGNVSMNHGDGMG 266
GGGPG + G G
Sbjct: 248 GGGPGGGNFGGSPGYG 263
Score = 37 (18.1 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 187 YGEIEEGPLGFDKQTGKPKG 206
YG ++ G G + G P G
Sbjct: 313 YGPMKSGNFGGSRNMGGPYG 332
>WB|WBGene00022235 [details] [associations]
symbol:sqd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000003 GO:GO:0003676 EMBL:FO081731
eggNOG:COG0724 GeneTree:ENSGT00700000104255 KO:K03102
RefSeq:NP_001023574.1 ProteinModelPortal:Q4W5P0 SMR:Q4W5P0
STRING:Q4W5P0 PaxDb:Q4W5P0 PRIDE:Q4W5P0 EnsemblMetazoa:Y73B6BL.6b.1
EnsemblMetazoa:Y73B6BL.6b.2 EnsemblMetazoa:Y73B6BL.6b.3
EnsemblMetazoa:Y73B6BL.6b.4 EnsemblMetazoa:Y73B6BL.6b.5
EnsemblMetazoa:Y73B6BL.6b.6 EnsemblMetazoa:Y73B6BL.6b.7
EnsemblMetazoa:Y73B6BL.6b.8 GeneID:177392 KEGG:cel:CELE_Y73B6BL.6
UCSC:Y73B6BL.6a.7 CTD:177392 WormBase:Y73B6BL.6b
HOGENOM:HOG000017794 InParanoid:Q4W5P0 OMA:GHQTGYK NextBio:896614
ArrayExpress:Q4W5P0 Uniprot:Q4W5P0
Length = 308
Score = 226 (84.6 bits), Expect = 7.4e-22, Sum P(2) = 7.4e-22
Identities = 64/199 (32%), Positives = 97/199 (48%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALK 130
+K+F+ G+ + E L S F+ YGE+ +A V D+ G+S+G+ F+ F +G LAL
Sbjct: 29 KKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALA 88
Query: 131 EPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEI 190
+ I G+ +V S N +K+FVG +P+D S L +HF +G++
Sbjct: 89 AREQTIKGK------SVEVKPAKSREN------KKVFVGGLPSDYSEQDLRSHFEQFGKV 136
Query: 191 EEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKPMG-- 248
++ FDKQT + FA V++ E A A +T ++ C D KKA P G
Sbjct: 137 DDIEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQTFGTRE--C---DVKKAVPQGKR 191
Query: 249 -PDGGG--PGNVSMNHGDG 264
P G PG M G G
Sbjct: 192 FPGAQGRMPGGRGMYGGRG 210
Score = 158 (60.7 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 39/130 (30%), Positives = 70/130 (53%)
Query: 129 LKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYG 188
++ KI+G + T + N G+ST D +KIFVG + +++ + L +HF YG
Sbjct: 1 MEATDNKINGNASET---IKEN-GHSTKGNED---KKIFVGGISPEVNNEDLSSHFTQYG 53
Query: 189 EIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKPMG 248
E+ + + +D+ G+ +GFA + T EG + AL +T+ GK + + A +++ K +
Sbjct: 54 EVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVEVKPAKSRENKKVF 113
Query: 249 PDGGGPGNVS 258
GG P + S
Sbjct: 114 V-GGLPSDYS 122
Score = 45 (20.9 bits), Expect = 7.4e-22, Sum P(2) = 7.4e-22
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 380 GYPEAGHYGLSSTSAGYPSQHHQAAGTS 407
G A H+ S +S GY S + AG +
Sbjct: 246 GQQGAAHHNNSGSSQGYGSGYQSFAGNN 273
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 260 (96.6 bits), Expect = 8.8e-22, P = 8.8e-22
Identities = 59/188 (31%), Positives = 96/188 (51%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
KLFI G+ WDT E L+ FS++GE+ EAV++ D+ TG+++G+GF+ F A + + E
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSL----------RKIFVGNVPNDMSADKLL 181
IDGR+ AV + N N S+ RKIFVG +P+ ++
Sbjct: 67 -KHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFK 125
Query: 182 AHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADN 241
+F +G + + +D T +P+GF Y + E + L+ ++GK + + A
Sbjct: 126 TYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVP 185
Query: 242 KKAKPMGP 249
K+ P GP
Sbjct: 186 KELSP-GP 192
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
Identities = 62/214 (28%), Positives = 103/214 (48%)
Query: 58 ESVRSIAD-ADPTQR--KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGY 114
E +AD + P K+F+ GL WDT+ + L+ F+ +GE+ + + +D TG+S+G+
Sbjct: 48 EDAGCVADISSPLTEGVKMFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGF 107
Query: 115 GFITFKHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPND 174
GFI FK + L+ ++DGR+ A+A +P+ +KIFVG + +
Sbjct: 108 GFILFKDAESVDKVLEHKEHRLDGRLIDPKKAMA-----MKKDPI----KKIFVGGLNPE 158
Query: 175 MSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQL 234
D++ +F +GEIE L D +T K +GF +K + + L V G +
Sbjct: 159 AGEDQIREYFETFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKILEKKFHNVSGSKC 218
Query: 235 NCRLADNKKA--KPMGPDGGGPGNVSMNHGDGMG 266
++A K+ + G GG G G G G
Sbjct: 219 EIKIAQPKEVYQQQYGGRGGSFGGRGGRGGKGQG 252
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 250 (93.1 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 62/206 (30%), Positives = 110/206 (53%)
Query: 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAM 126
D Q KLF+ G+ W+T + LR F+ YGE+ +A+V+ DK TG+ +G+GF+ F D ++
Sbjct: 2 DSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFS--DPSV 59
Query: 127 L--ALKEP----SKKIDGRVTVTN--LAVAGNSGN---STNNPVDV--SLRKIFVGNVPN 173
L L+E ++++D + ++ V+G +GN S ++ D +KIFVG +P
Sbjct: 60 LDRVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPP 119
Query: 174 DMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQ 233
++ ++ +F YG + + + +D+ T +P+GF + + + + L + GKQ
Sbjct: 120 TLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQ 179
Query: 234 LNCRLADNKKAKPMGPD----GGGPG 255
+ + A K A P G GGG G
Sbjct: 180 VEVKRALPKDANPGGGGRSMGGGGSG 205
Score = 122 (48.0 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 27/106 (25%), Positives = 54/106 (50%)
Query: 159 VDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGA 218
+D K+FVG + + DKL HF YGE+ + + DK TG+P+GF ++
Sbjct: 1 MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60
Query: 219 QAALVDPIKTVDGKQLNCRLADNKKAKPMGPDGGGPGNVSMNHGDG 264
L + ++D ++++ + A +++ + + G GN++ + G
Sbjct: 61 DRVLQEK-HSIDTREVDVKRAMSREEQQVS---GRTGNLNTSRSSG 102
Score = 111 (44.1 bits), Expect = 0.00099, Sum P(2) = 0.00099
Identities = 25/84 (29%), Positives = 42/84 (50%)
Query: 57 LESVRSIA-DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYG 115
L + RS DA +K+F+ GL T E R F YG + + ++ D+AT + +G+G
Sbjct: 95 LNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFG 154
Query: 116 FITFKHIDGAMLALKEPSKKIDGR 139
F++F D L + + G+
Sbjct: 155 FVSFDSEDAVDSVLHKTFHDLSGK 178
Score = 43 (20.2 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 18/52 (34%), Positives = 22/52 (42%)
Query: 370 PPSSAGMP-SGGYPEAGHYGLSSTSAGYPSQHHQAAGTSPVPRVPPGGMYPN 420
P +S P S GY G YG + +GY G +P P P G Y N
Sbjct: 296 PRNSWDTPASSGYGNPG-YGSGAAHSGYG-----VPGAAP-PTQSPSG-YSN 339
Score = 42 (19.8 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 364 SSLYRLPPSSAGMPSGGYPEAGHYGLSSTSAGYPSQHHQAAGTS 407
SS Y P +G GY G + + +GY +Q + G S
Sbjct: 305 SSGYGNPGYGSGAAHSGYGVPGAAPPTQSPSGYSNQGYGYGGYS 348
Score = 37 (18.1 bits), Expect = 4.3e-21, Sum P(2) = 4.3e-21
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 371 PSSAGMPSGGYPEAGHYGLSSTSAGY 396
P G GG G+ G + Y
Sbjct: 192 PGGGGRSMGGGGSGGYQGYGGNESSY 217
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 257 (95.5 bits), Expect = 1.6e-21, P = 1.6e-21
Identities = 64/224 (28%), Positives = 103/224 (45%)
Query: 47 SSAVARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDK 106
S A+ ++D E D K+FI GL W+TT + LR F +GE+ + V+ D
Sbjct: 142 SGAMESNEDNAEETSPFNREDG---KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDS 198
Query: 107 ATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKI 166
TG+S+G+GF+TFK+ + + +DG++ A+ T K+
Sbjct: 199 TTGRSRGFGFLTFKN-PKCVNEVMSKEHHLDGKIIDPKRAIPREEQEKT--------AKM 249
Query: 167 FVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPI 226
FVG VP D + ++ F +G + + L DK TG+P+GF Y+ +A + P
Sbjct: 250 FVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPY 309
Query: 227 KTVDGKQLNCRLADNKKAKPMGPDG---GGPGNVSMNHGDGMGM 267
T+ GK + + A K + D G GN + + M M
Sbjct: 310 ITIHGKPVEVKRATPKASLRDSHDRHQHGYHGNANPYYAQNMNM 353
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 57/195 (29%), Positives = 96/195 (49%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+F+ GL WDTT + L+ F+ +GE+ + + LD TG+S+G+GF+ FK + + +
Sbjct: 55 KMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFKEAESVEKVITQ 114
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
K++G+V A A T PV +KIFVG + D +K+ +F YGE+E
Sbjct: 115 KEHKLNGKVIDPKKAKA----MKTKEPV----KKIFVGGLSPDTPEEKIREYFDAYGEVE 166
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKPMGPDG 251
L + +T K +GF +K E + + + + ++A +K+
Sbjct: 167 SIELPMENKTNKRRGFCFITFKEEEPVKKIMEKKYHNIGLSKCEVKVAMSKEQYQQQQQW 226
Query: 252 GGPGNVSMNHGDGMG 266
GG G + + G G G
Sbjct: 227 GGRGGYT-SRGRGRG 240
Score = 119 (46.9 bits), Expect = 0.00015, P = 0.00015
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 58 ESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFI 117
+ +++ +P +K+F+ GL DT E +R F AYGE+E + ++ T K +G+ FI
Sbjct: 127 KKAKAMKTKEPV-KKIFVGGLSPDTPEEKIREYFDAYGEVESIELPMENKTNKRRGFCFI 185
Query: 118 TFKHIDGAMLALKEPSKKI 136
TFK +EP KKI
Sbjct: 186 TFKE--------EEPVKKI 196
>UNIPROTKB|F1LM82 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00700000104376 IPI:IPI00923129
Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
Length = 312
Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 63/200 (31%), Positives = 100/200 (50%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFK---HIDGAML 127
RKLFI GL ++TT E LR+ + +G+L + VV+ D A+ +S+G+GF+TF +D AM
Sbjct: 20 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 79
Query: 128 ALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACY 187
A P IDGRV AVA V+++K+FVG + D L +F Y
Sbjct: 80 A--RPHS-IDGRVVEPKRAVAREESGKPG--AHVTVKKLFVGGIKEDTEEHHLRDYFEEY 134
Query: 188 GEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA-DNKKAKP 246
G+I+ + D+Q+GK +GF + + ++ T++G R A ++ +
Sbjct: 135 GKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQE 194
Query: 247 MGPDGGGPGNVSMNHGDGMG 266
+ G G + GD G
Sbjct: 195 VQSSRSGRGG-NFGFGDSRG 213
Score = 122 (48.0 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHID 123
A T +KLF+ G+ DT LR F YG+++ +I D+ +GK +G+GF+TF D
Sbjct: 106 AHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD 163
Score = 37 (18.1 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 187 YGEIEEGPLGFDKQTGKPKG 206
YG ++ G G + G P G
Sbjct: 272 YGPMKSGNFGGSRNMGGPYG 291
>UNIPROTKB|F1NIB2 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 OMA:FILFKDP EMBL:AADN02028501
EMBL:AADN02028502 EMBL:AADN02028503 IPI:IPI00574172
Ensembl:ENSGALT00000023234 ArrayExpress:F1NIB2 Uniprot:F1NIB2
Length = 263
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 58/197 (29%), Positives = 98/197 (49%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+F+ GL WDT+ + L+ F+ +GE+ + + +D TG+S+G+GFI FK L++
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
++DGR+ A+A +PV +KIFVG + + + +K+ +F +GEIE
Sbjct: 61 KEHRLDGRLIDPKKAMA-----MKKDPV----KKIFVGGLNPEATEEKIREYFGEFGEIE 111
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKA--KPMGP 249
L D +T K +GF +K + + L V G + ++A K+ +
Sbjct: 112 AIELPMDPKTNKRRGFVFITFKEEDPVKKVLEKKFHNVSGSKCEIKVAQPKEVYQQQQFS 171
Query: 250 DGGGPGNVSMNHGDGMG 266
GGG G+ G G
Sbjct: 172 SGGGRGSYGGRGRGGRG 188
Score = 119 (46.9 bits), Expect = 0.00010, P = 0.00010
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAM 126
DP +K+F+ GL + T E +R F +GE+E + +D T K +G+ FITFK D
Sbjct: 81 DPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVK 139
Query: 127 LALKEPSKKIDG 138
L++ + G
Sbjct: 140 KVLEKKFHNVSG 151
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 58/197 (29%), Positives = 98/197 (49%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+F+ GL WDT+ + L+ F+ +GE+ + + +D TG+S+G+GFI FK L++
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
++DGR+ A+A +PV +KIFVG + + + +K+ +F +GEIE
Sbjct: 61 KEHRLDGRLIDPKKAMA-----MKKDPV----KKIFVGGLNPEATEEKIREYFGEFGEIE 111
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKA--KPMGP 249
L D +T K +GF +K + + L V G + ++A K+ +
Sbjct: 112 AIELPMDPKTNKRRGFVFITFKEEDPVKKVLEKKFHNVSGSKCEIKVAQPKEVYQQQQFS 171
Query: 250 DGGGPGNVSMNHGDGMG 266
GGG G+ G G
Sbjct: 172 SGGGRGSYGGRGRGGRG 188
Score = 119 (46.9 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAM 126
DP +K+F+ GL + T E +R F +GE+E + +D T K +G+ FITFK D
Sbjct: 81 DPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVK 139
Query: 127 LALKEPSKKIDG 138
L++ + G
Sbjct: 140 KVLEKKFHNVSG 151
>UNIPROTKB|A5D9H5 [details] [associations]
symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
NextBio:20874604 Uniprot:A5D9H5
Length = 306
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 65/212 (30%), Positives = 101/212 (47%)
Query: 64 ADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHID 123
A A + K+FI GL WDTT + L+ FS +GE+ + + LD TG+S+G+GF+ FK +
Sbjct: 90 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 149
Query: 124 GAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAH 183
+ + K++G+V A A T PV +KIFVG + D +K+ +
Sbjct: 150 SVDKVMDQKEHKLNGKVIDPKRAKA----MKTKEPV----KKIFVGGLSPDTPEEKIREY 201
Query: 184 FACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKK 243
F +GE+E L D +T K +GF +K E + + V + ++A +K+
Sbjct: 202 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 261
Query: 244 A----KPMGPDGGGPGNVSMNHGD---GMGMV 268
+ G GG G GD G G V
Sbjct: 262 QYQQQQQWGSRGGFAGRARGRGGDQQSGYGKV 293
>UNIPROTKB|F1NCW4 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
Uniprot:F1NCW4
Length = 258
Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
Identities = 60/196 (30%), Positives = 94/196 (47%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+FI GL WDTT + L+ FS +GE+ + + LD TG+S+G+GF+ FK + + +
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
K++G+V A A T PV +KIFVG + D +K+ +F +GE+E
Sbjct: 61 KEHKLNGKVIDPKRAKA----MKTKEPV----KKIFVGGLSPDTPEEKIREYFGAFGEVE 112
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKPMGPDG 251
L D +T K +GF +K E + + V + ++A +K+
Sbjct: 113 SIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQW 172
Query: 252 GGPGN-VSMNHGDGMG 266
G G V G G G
Sbjct: 173 GSRGGFVGRARGRGGG 188
Score = 118 (46.6 bits), Expect = 0.00013, P = 0.00013
Identities = 28/76 (36%), Positives = 43/76 (56%)
Query: 61 RSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFK 120
+++ +P +K+F+ GL DT E +R F A+GE+E + +D T K +G+ FITFK
Sbjct: 76 KAMKTKEPV-KKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFK 134
Query: 121 HIDGAMLALKEPSKKI 136
+EP KKI
Sbjct: 135 E--------EEPVKKI 142
>UNIPROTKB|F1Q2T4 [details] [associations]
symbol:F1Q2T4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03026834
Ensembl:ENSCAFT00000030325 Uniprot:F1Q2T4
Length = 290
Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
Identities = 72/213 (33%), Positives = 105/213 (49%)
Query: 61 RSIADADPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF 119
+S + +P Q RKLFI GL ++TT E LRS F +G L + VV+ D T S+G+GF+T+
Sbjct: 3 KSESPIEPEQLRKLFIGGLSFETTNESLRSHFEQWGMLRDCVVMRDPNTKHSRGFGFVTY 62
Query: 120 ---KHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMS 176
K +D A S K+DGRV AV+ +S +++RKIFVG + D
Sbjct: 63 ATVKEVDAAR------SHKVDGRVVEPKRAVSRE--DSQRPGAHLTVRKIFVGGIKEDTE 114
Query: 177 ADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNC 236
L +F YG+IE + D+ +GK +GFA + + ++ V+G
Sbjct: 115 EHHLRDYFKQYGKIEVIEIMTDRGSGKKRGFASVTFDDHD-KDKIVIQKYYIVNGHNCEV 173
Query: 237 RLADNKK--AKPMGPDG-GGPGNVSMNHGDGMG 266
R A +K+ A G G GN G G G
Sbjct: 174 RKALSKQEMASASSSRGRSGSGNFGGGRGGGFG 206
>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
symbol:hnrnpa0b "heterogeneous nuclear
ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
Uniprot:Q6NYW8
Length = 314
Score = 230 (86.0 bits), Expect = 5.9e-21, Sum P(2) = 5.9e-21
Identities = 59/195 (30%), Positives = 94/195 (48%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
KLF+ GL TT +GLRS F +G L + VV+ + +S+ +GF+T+ + A A+
Sbjct: 9 KLFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEEADAAMAA 68
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
+DG+ AVA V +KIFVG + +D+ L F+ +G IE
Sbjct: 69 RPHVVDGKNVEVKRAVAREDAGRPEALAKV--KKIFVGGLKDDIEEKDLTEFFSQFGMIE 126
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKPMGPDG 251
+ + DK TGK +GF ++ + A A+V ++G ++ + A K+ + G
Sbjct: 127 KSEVITDKDTGKKRGFGFVHFEDNDSADKAVVLKFHMINGHKVEVKKALTKQE--IQAAG 184
Query: 252 GGPGNVSMNHGDGMG 266
G G G GMG
Sbjct: 185 GARGGRGRGGGRGMG 199
Score = 119 (46.9 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 26/68 (38%), Positives = 40/68 (58%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALK 130
+K+F+ GL D + L FS +G +E++ VI DK TGK +G+GF+ F+ D A A+
Sbjct: 99 KKIFVGGLKDDIEEKDLTEFFSQFGMIEKSEVITDKDTGKKRGFGFVHFEDNDSADKAVV 158
Query: 131 EPSKKIDG 138
I+G
Sbjct: 159 LKFHMING 166
Score = 37 (18.1 bits), Expect = 5.9e-21, Sum P(2) = 5.9e-21
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 248 GPDGGGPGNVSMNHGDGMG 266
G GGG G +G G G
Sbjct: 207 GGRGGGYGGYGGGYGGGYG 225
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
Identities = 60/178 (33%), Positives = 90/178 (50%)
Query: 67 DPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGA 125
+P Q RKLFI GL ++TT E LRS F +G L + VV+ D T +S+G+GF+T+ ++
Sbjct: 5 EPEQVRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 64
Query: 126 MLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFA 185
A+ K+DGRV AV S + P KIFVG + D L +F
Sbjct: 65 DAAMNARPHKVDGRVVEPKRAV---SIEDSQRPGAYLNMKIFVGAIKEDTEEHHLRDYFG 121
Query: 186 CYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKK 243
YG+ E + D+ +GK +GFA + + ++ TV+G R A +K+
Sbjct: 122 QYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIVIQKYHTVNGHNCEVRKAPSKQ 179
>TAIR|locus:2196521 [details] [associations]
symbol:AT1G22330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AC068562 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P09651 HOGENOM:HOG000276232
ProtClustDB:CLSN2689288 IPI:IPI00540466 PIR:B86356
RefSeq:NP_564168.2 UniGene:At.41608 ProteinModelPortal:Q9LME7
SMR:Q9LME7 STRING:Q9LME7 PRIDE:Q9LME7 EnsemblPlants:AT1G22330.1
GeneID:838839 KEGG:ath:AT1G22330 TAIR:At1g22330 InParanoid:Q9LME7
OMA:TESHAPQ PhylomeDB:Q9LME7 Genevestigator:Q9LME7 Uniprot:Q9LME7
Length = 291
Score = 225 (84.3 bits), Expect = 7.1e-21, Sum P(2) = 7.1e-21
Identities = 44/89 (49%), Positives = 58/89 (65%)
Query: 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAM 126
D T K+F+ GL W+T T+ +R F +GE+ EAV+I DKATGKSKGYGF+TF+ D A
Sbjct: 13 DTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSAT 72
Query: 127 LALKEPSKKIDGRVTVTNLAVAGNSGNST 155
A+ +P+ IDGR N+A G ST
Sbjct: 73 RAVADPNPVIDGRKANCNIASFGRPRPST 101
Score = 170 (64.9 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 35/106 (33%), Positives = 57/106 (53%)
Query: 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQ 219
D + K+FVG + + D++ +F +GEI E + DK TGK KG+ ++ ++ A
Sbjct: 13 DTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSAT 72
Query: 220 AALVDPIKTVDGKQLNCRLADNKKAKPMGPDGGGPG-NVSMNHGDG 264
A+ DP +DG++ NC +A + +P P G G G + S G G
Sbjct: 73 RAVADPNPVIDGRKANCNIASFGRPRPSTPRGRGQGGSPSQYQGGG 118
Score = 37 (18.1 bits), Expect = 7.1e-21, Sum P(2) = 7.1e-21
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 370 PPSSAGMPSGGYPEAGHYGLSSTSAGYPSQHHQAA 404
P + G GG P G S+ G + QAA
Sbjct: 99 PSTPRGRGQGGSPSQYQGGGQSSYTGMAAPVQQAA 133
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 63/204 (30%), Positives = 98/204 (48%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+FI GL WDTT + L+ FS +GE+ + + LD TG+S+G+GF+ FK + + +
Sbjct: 2 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 61
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
K++G+V A A T PV +KIFVG + D +K+ +F +GE+E
Sbjct: 62 KEHKLNGKVIDPKRAKA----MKTKEPV----KKIFVGGLSPDTPEEKIREYFGGFGEVE 113
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKA----KPM 247
L D +T K +GF +K E + + V + ++A +K+ +
Sbjct: 114 SIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQW 173
Query: 248 GPDGGGPGNVSMNHGD---GMGMV 268
G GG G GD G G V
Sbjct: 174 GSRGGFAGRARGRGGDQQSGYGKV 197
Score = 114 (45.2 bits), Expect = 0.00020, P = 0.00020
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 61 RSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFK 120
+++ +P +K+F+ GL DT E +R F +GE+E + +D T K +G+ FITFK
Sbjct: 77 KAMKTKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK 135
Query: 121 HIDGAMLALKEPSKKI 136
+EP KKI
Sbjct: 136 E--------EEPVKKI 143
>UNIPROTKB|G3V6A4 [details] [associations]
symbol:Hnrpd "Protein Hnrpd" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 RefSeq:NP_001076009.1
UniGene:Rn.94022 GeneID:79256 KEGG:rno:79256 CTD:79256
NextBio:614748 EMBL:CH474022 Ensembl:ENSRNOT00000003158
Uniprot:G3V6A4
Length = 304
Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 64/212 (30%), Positives = 101/212 (47%)
Query: 64 ADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHID 123
A A + K+FI GL WDTT + L+ FS +G++ + + LD TG+S+G+GF+ FK +
Sbjct: 88 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESE 147
Query: 124 GAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAH 183
+ + K++G+V A A T PV +KIFVG + D +K+ +
Sbjct: 148 SVDKVMDQKEHKLNGKVIDPKRAKA----MKTKEPV----KKIFVGGLSPDTPEEKIREY 199
Query: 184 FACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKK 243
F +GE+E L D +T K +GF +K E + + V + ++A +K+
Sbjct: 200 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 259
Query: 244 A----KPMGPDGGGPGNVSMNHGD---GMGMV 268
+ G GG G GD G G V
Sbjct: 260 QYQQQQQWGSRGGFAGRARGRGGDQQSGYGKV 291
>UNIPROTKB|F1LZZ2 [details] [associations]
symbol:F1LZZ2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00556964
Ensembl:ENSRNOT00000044311 OMA:KERREDT Uniprot:F1LZZ2
Length = 294
Score = 219 (82.2 bits), Expect = 9.9e-21, Sum P(2) = 9.9e-21
Identities = 66/205 (32%), Positives = 100/205 (48%)
Query: 67 DPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHID-- 123
+P Q RKLFI GL ++TT LR F +G L + VV+ D S+G+ F+T+ ++
Sbjct: 32 EPEQLRKLFIGGLSFETTDGSLREHFEKWGTLTDCVVMRDPQRKCSRGFSFVTYSCVEEV 91
Query: 124 GAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAH 183
GA++ + P K + G V AV+ +S + + KIFVG + D L +
Sbjct: 92 GAVMCAR-PHKVV-GCVVEPKRAVSRE--DSIIPGAHLMVEKIFVGGIKEDTEEYNLRDY 147
Query: 184 FACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNK- 242
F YG+IE + D+Q+GK +GFA + + +V TV+G NC + + +
Sbjct: 148 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDNHDTVDK-VVQKYHTVNGH--NCEVKEQEM 204
Query: 243 -KAKPMGPDGGGPGNVSMNHGDGMG 266
A GGG GN M G G
Sbjct: 205 PSAGSQRGHGGGSGNF-MGRGGNFG 228
Score = 115 (45.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 49 AVARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKAT 108
AV+R D ++ + + K+F+ G+ DT LR F YG++E V+ D+ +
Sbjct: 112 AVSREDSIIPGAHLMVE------KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQS 165
Query: 109 GKSKGYGFITFKHID 123
GK +G+ F+TF + D
Sbjct: 166 GKKRGFAFVTFDNHD 180
Score = 43 (20.2 bits), Expect = 9.9e-21, Sum P(2) = 9.9e-21
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 248 GPDGGGPGNVSMNHGDGMG 266
G GGGPG + + G G G
Sbjct: 270 GYGGGGPGYGNQDGGSGGG 288
>UNIPROTKB|D4AD23 [details] [associations]
symbol:D4AD23 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 IPI:IPI00390944
ProteinModelPortal:D4AD23 Ensembl:ENSRNOT00000039846 Uniprot:D4AD23
Length = 313
Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 63/209 (30%), Positives = 104/209 (49%)
Query: 61 RSIADADPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF 119
+S + +P Q RKLFI L ++TT E LRS F +G L + VV+ D T +S+G+GF+T+
Sbjct: 3 KSESPKEPEQLRKLFIGALSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 120 KHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADK 179
++ A+ +K++GRV AV+ +S ++++KIFVG + D +
Sbjct: 63 ATVEEVDAAMNARPQKVNGRVVEPKRAVSRE--DSQRPGAHLTVKKIFVGGIKED-TEHH 119
Query: 180 LLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA 239
L +F YG+ E + D+ GK +GFA + + ++ TV+G R+
Sbjct: 120 LRDYFEQYGKTEVIEIMTDRGRGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCETRVK 179
Query: 240 DNKKAKPMGPDG-GGPGNVSMNHGD-GMG 266
+ + G G GN + G G G
Sbjct: 180 QDMASASSSQRGRSGSGNFGYSGGSRGYG 208
>FB|FBgn0004237 [details] [associations]
symbol:Hrb87F "Heterogeneous nuclear ribonucleoprotein at
87F" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005703
"polytene chromosome puff" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0000785 "chromatin" evidence=IDA] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035062 "omega speckle" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0007067 "mitosis" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005737 GO:GO:0007067 GO:GO:0022008 GO:GO:0000166
GO:GO:0043565 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000785
GO:GO:0030529 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 KO:K12741 EMBL:X54803 EMBL:X58183
EMBL:X58184 EMBL:X59691 EMBL:X62636 EMBL:BT012315 PIR:A41732
PIR:S22315 RefSeq:NP_001163602.1 RefSeq:NP_476806.1
RefSeq:NP_476807.1 UniGene:Dm.1711 ProteinModelPortal:P48810
SMR:P48810 IntAct:P48810 MINT:MINT-296059 STRING:P48810
PaxDb:P48810 EnsemblMetazoa:FBtr0082851 EnsemblMetazoa:FBtr0300590
EnsemblMetazoa:FBtr0310621 GeneID:48535 KEGG:dme:Dmel_CG12749
CTD:48535 FlyBase:FBgn0004237 InParanoid:P48810 OMA:MENRDAK
OrthoDB:EOG46WWRF PhylomeDB:P48810 ChiTaRS:Hrb87F GenomeRNAi:48535
NextBio:839451 Bgee:P48810 GermOnline:CG12749 GO:GO:0035062
Uniprot:P48810
Length = 385
Score = 243 (90.6 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 66/204 (32%), Positives = 101/204 (49%)
Query: 67 DPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKH---I 122
+P Q RKLFI GL + TT +GL++ F +G + + VV+ D T +S+G+GFIT+ I
Sbjct: 19 EPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMI 78
Query: 123 DGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLA 182
D A A P K IDGR AV +S N +++K+FVG + +D + L
Sbjct: 79 DNAQNA--RPHK-IDGRTVEPKRAVPRQEIDSPN--AGATVKKLFVGGLRDDHDEECLRE 133
Query: 183 HFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNK 242
+F +G+I + DK TGK +GFA + + ++ ++ K L+ + A K
Sbjct: 134 YFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKAIAK 193
Query: 243 KAKPMGPDGGGPGNVSMNHGDGMG 266
+ GGG G G G
Sbjct: 194 QDMDRQGGGGGRGGPRAGGRGGQG 217
Score = 113 (44.8 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 26/84 (30%), Positives = 41/84 (48%)
Query: 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDG 124
+A T +KLF+ GL D E LR F +G++ ++ DK TGK +G+ FI F D
Sbjct: 109 NAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDP 168
Query: 125 AMLALKEPSKKIDGRVTVTNLAVA 148
+ + + I + A+A
Sbjct: 169 VDKIILQKTHSIKNKTLDVKKAIA 192
Score = 56 (24.8 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 14/36 (38%), Positives = 16/36 (44%)
Query: 231 GKQLNCRLADNKKAKPMGPDGGGPGNVSMNHGDGMG 266
G Q N +N+ A P GGG G N G G G
Sbjct: 327 GPQRNSNFGNNRPA-PYSQGGGGGGFNKGNQGGGQG 361
Score = 43 (20.2 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 9/16 (56%), Positives = 9/16 (56%)
Query: 251 GGGPGNVSMNHGDGMG 266
GGG GN N G G G
Sbjct: 244 GGGFGNSGGNFGGGQG 259
Score = 38 (18.4 bits), Expect = 3.8e-20, Sum P(2) = 3.8e-20
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 248 GPDGGGPGNVSMNHGDGMG 266
G GGG G N+ G G
Sbjct: 354 GNQGGGQGFAGNNYNTGGG 372
Score = 38 (18.4 bits), Expect = 3.8e-20, Sum P(2) = 3.8e-20
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 248 GPDGGGPGNVSMNHGDGMG 266
G GGG G + G G G
Sbjct: 256 GGQGGGSGGWNQQGGSGGG 274
>TAIR|locus:2032120 [details] [associations]
symbol:AT1G78260 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HSSP:P09651 HOGENOM:HOG000276232 eggNOG:NOG248750 EMBL:AY084982
EMBL:BT030002 IPI:IPI00529893 RefSeq:NP_565175.1 UniGene:At.43623
ProteinModelPortal:Q8LF90 SMR:Q8LF90 STRING:Q8LF90
EnsemblPlants:AT1G78260.1 GeneID:844161 KEGG:ath:AT1G78260
TAIR:At1g78260 InParanoid:Q8LF90 OMA:SPYYYGY PhylomeDB:Q8LF90
ProtClustDB:CLSN2689288 Genevestigator:Q8LF90 Uniprot:Q8LF90
Length = 287
Score = 215 (80.7 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 41/83 (49%), Positives = 55/83 (66%)
Query: 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAM 126
D T K+F+ GL W+T T+ +R F +GE+ EAV+I DK TGKSKGYGF+TF+ D A
Sbjct: 13 DTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSAT 72
Query: 127 LALKEPSKKIDGRVTVTNLAVAG 149
A+ +P+ IDGR N+A G
Sbjct: 73 RAVADPNPVIDGRKANCNIASFG 95
Score = 168 (64.2 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 34/106 (32%), Positives = 56/106 (52%)
Query: 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQ 219
D + K+FVG + + D++ +F +GEI E + DK TGK KG+ ++ ++ A
Sbjct: 13 DTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSAT 72
Query: 220 AALVDPIKTVDGKQLNCRLADNKKAKPMGPDGGGP-GNVSMNHGDG 264
A+ DP +DG++ NC +A + +P P G G G+ S G
Sbjct: 73 RAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQTGSPSQYQSGG 118
Score = 47 (21.6 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 371 PSSAGMPSGGYPEAGHYGLSSTSAGYPSQHH 401
PSS+G P +YG S + P QHH
Sbjct: 182 PSSSGATI--MPSPYYYGYSLQAPRVPYQHH 210
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 62/205 (30%), Positives = 99/205 (48%)
Query: 64 ADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHID 123
A A + K+FI GL WDTT + L+ FS +GE+ + + LD TG+S+G+GF+ FK +
Sbjct: 23 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 82
Query: 124 GAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAH 183
+ + K++G+V A A T PV +KIFVG + D +K+ +
Sbjct: 83 SVDKVMDQKEHKLNGKVIDPKRAKA----MKTKEPV----KKIFVGGLSPDTPEEKIREY 134
Query: 184 FACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKK 243
F +GE+E L D +T K +GF +K E + + V + ++A +K+
Sbjct: 135 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 194
Query: 244 A----KPMGPDGGGPGNVSMNHGDG 264
+ G GG G + G G
Sbjct: 195 QYQQQQQWGSRGGFAGR-ARGRGGG 218
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 59/184 (32%), Positives = 94/184 (51%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
KLF+ GL W TT E LRS FS YGE+ + V++ DK T +S+G+GF+ FK + L
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
+DGR N S NS +N KIFVG +P++ +L +F +G +
Sbjct: 71 RPHTLDGR----NQK-GPRSDNSKSN-------KIFVGGIPHNCGETELREYFKKFGVVT 118
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKPMGPDG 251
E + +D + +P+GF ++ + A+ + GK++ + A+ + +K P
Sbjct: 119 EVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAP-- 176
Query: 252 GGPG 255
G PG
Sbjct: 177 GQPG 180
>UNIPROTKB|F1M460 [details] [associations]
symbol:F1M460 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00569538
ProteinModelPortal:F1M460 Ensembl:ENSRNOT00000043465
ArrayExpress:F1M460 Uniprot:F1M460
Length = 224
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 64/205 (31%), Positives = 101/205 (49%)
Query: 67 DPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGA 125
+P Q RKL I GL ++TT + LR F +G L + VV+ D T +S+G+GF+T+ ++
Sbjct: 3 EPEQLRKLLIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 62
Query: 126 MLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFA 185
A+ K+DGRV AV+ +S ++++KIFVG + D L +F
Sbjct: 63 DAAVCARPHKVDGRVVEPKRAVSRE--DSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFE 120
Query: 186 CYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKA- 244
YG+IE + D Q+GK +GFA + + + ++G + A +K+
Sbjct: 121 KYGKIETIEVMEDSQSGKKRGFAFVTFDDHDTVDKIVDQKYHIINGHNCEVKKALSKQEM 180
Query: 245 KPMGPD---GGGPGNVSMNHGDGMG 266
+ G GGG GN M G G
Sbjct: 181 QSAGSQRGRGGGSGNF-MGRGGNFG 204
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 255 (94.8 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 64/196 (32%), Positives = 100/196 (51%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGA-MLALK 130
K+FI GL W+TT + L+ FS +GE++E V+ D ATG+S+G+GF+TFK + +K
Sbjct: 111 KMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKTVNTVMVK 170
Query: 131 EPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEI 190
E +DG++ A+ + T+ KIFVG V + + F +G +
Sbjct: 171 E--HYLDGKIIDPKRAIPRDEQEKTS--------KIFVGGVSQEATEQDFKQFFMQFGRV 220
Query: 191 EEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKPMGP- 249
+ L DK TG+P+GF + + +AAL P++ + GK + KKA+P G
Sbjct: 221 IDATLMIDKDTGRPRGFGFVTFDSEAAVEAALSRPLEIL-GKTIEV-----KKAQPRGNL 274
Query: 250 -DGGGPGNVSMNHGDG 264
D G G + DG
Sbjct: 275 RDDGDRGRRGRDFRDG 290
Score = 123 (48.4 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 25/96 (26%), Positives = 48/96 (50%)
Query: 56 VLESVRSIA-DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGY 114
+++ R+I D K+F+ G+ + T + + F +G + +A +++DK TG+ +G+
Sbjct: 178 IIDPKRAIPRDEQEKTSKIFVGGVSQEATEQDFKQFFMQFGRVIDATLMIDKDTGRPRGF 237
Query: 115 GFITFKHIDGAMLALKEPSKKIDGRVTVTNLAVAGN 150
GF+TF AL P + + + V GN
Sbjct: 238 GFVTFDSEAAVEAALSRPLEILGKTIEVKKAQPRGN 273
Score = 44 (20.5 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 241 NKKAKPMGPDGGGPGNVSM--NH-GDGMG 266
N MG G G GN++M N+ G G G
Sbjct: 417 NNMGGQMGMGGNGSGNMNMGSNYAGGGRG 445
>UNIPROTKB|Q5ZIH1 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
Length = 257
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 59/195 (30%), Positives = 93/195 (47%)
Query: 73 LFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEP 132
+FI GL WDTT + L+ FS +GE+ + + LD TG+S+G+GF+ FK + + +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 133 SKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEE 192
K++G+V A A T PV +KIFVG + D +K+ +F +GE+E
Sbjct: 61 EHKLNGKVIDPKRAKA----MKTKEPV----KKIFVGGLSPDTPEEKIREYFGAFGEVES 112
Query: 193 GPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKPMGPDGG 252
L D +T K +GF +K E + + V + ++A +K+ G
Sbjct: 113 IELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWG 172
Query: 253 GPGN-VSMNHGDGMG 266
G V G G G
Sbjct: 173 SRGGFVGRARGRGGG 187
Score = 118 (46.6 bits), Expect = 0.00013, P = 0.00013
Identities = 28/76 (36%), Positives = 43/76 (56%)
Query: 61 RSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFK 120
+++ +P +K+F+ GL DT E +R F A+GE+E + +D T K +G+ FITFK
Sbjct: 75 KAMKTKEPV-KKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFK 133
Query: 121 HIDGAMLALKEPSKKI 136
+EP KKI
Sbjct: 134 E--------EEPVKKI 141
>UNIPROTKB|F1M6U1 [details] [associations]
symbol:F1M6U1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362299 Ensembl:ENSRNOT00000007800
Uniprot:F1M6U1
Length = 252
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 58/192 (30%), Positives = 95/192 (49%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
KLFI GL ++TT E LRS F +G L + VV+ D T + +G+GF+T+ ++ A+
Sbjct: 8 KLFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDAAMNA 67
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
K+DGRV AV+ +S ++++KIFVG++ D L +F YG+IE
Sbjct: 68 RPHKVDGRVVEPKRAVSRE--DSQRPGAHLTVKKIFVGSIKEDTEEHHLREYFEQYGKIE 125
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKPMGPDG 251
+ D+ +G+ +GF + + ++ TV+G R A +K+
Sbjct: 126 VIEIMTDRGSGQKRGFVFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSS 185
Query: 252 GGPGNVSMNHGD 263
N S N+ D
Sbjct: 186 QRGRNGSGNYND 197
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
Identities = 60/197 (30%), Positives = 96/197 (48%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+FI GL WDTT + L+ FS +GE+ + + LD TG+S+G+GF+ FK + + +
Sbjct: 46 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 105
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
K++G+V A A T PV +KIFVG + D +K+ +F +GE+E
Sbjct: 106 KEHKLNGKVIDPKRAKA----MKTKEPV----KKIFVGGLSPDTPEEKIREYFGGFGEVE 157
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKA----KPM 247
L D +T K +GF +K E + + V + ++A +K+ +
Sbjct: 158 SIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQW 217
Query: 248 GPDGGGPGNVSMNHGDG 264
G GG G + G G
Sbjct: 218 GSRGGFAGR-ARGRGGG 233
Score = 114 (45.2 bits), Expect = 0.00053, P = 0.00053
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 61 RSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFK 120
+++ +P +K+F+ GL DT E +R F +GE+E + +D T K +G+ FITFK
Sbjct: 121 KAMKTKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK 179
Query: 121 HIDGAMLALKEPSKKI 136
+EP KKI
Sbjct: 180 E--------EEPVKKI 187
>UNIPROTKB|F1N3T3 [details] [associations]
symbol:F1N3T3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02019525 IPI:IPI00709098
Ensembl:ENSBTAT00000014774 OMA:FGGYPCY Uniprot:F1N3T3
Length = 352
Score = 247 (92.0 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 64/202 (31%), Positives = 101/202 (50%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALK 130
RKLFI GL +TT E L++ + +GEL + VVI A+ KS+G+GF+TF + A+
Sbjct: 21 RKLFIGGLSSETTEESLKNYYQQWGELTDCVVIRGLASQKSRGFGFVTFSSVAEVDAAMA 80
Query: 131 EPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEI 190
IDGRV AV+ + V+V +K+FVG + D L +F YG+I
Sbjct: 81 ARPHSIDGRVVDPKRAVSREKSEKQGSLVNV--KKLFVGGIKEDTEEHHLREYFEKYGKI 138
Query: 191 EEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGK--QLNCRLADNKKAKPMG 248
+ + D+Q+GK +GF + + ++ ++G ++ L+ + + G
Sbjct: 139 DAIEIITDRQSGKKRGFGFVTFDDYDPVDKIMLQKYHAINGHRAEVGKALSRQEMKEIQG 198
Query: 249 PDG--GGP-G-NVSMNHGDGMG 266
P GGP G +VS N G G
Sbjct: 199 PRSRKGGPFGFSVSSNGGGNFG 220
>WB|WBGene00003423 [details] [associations]
symbol:msi-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:Z35601 EMBL:AB036738
PIR:T24148 RefSeq:NP_497799.1 UniGene:Cel.19474
ProteinModelPortal:G5EFS2 SMR:G5EFS2 EnsemblMetazoa:R10E9.1.1
EnsemblMetazoa:R10E9.1.2 GeneID:175514 KEGG:cel:CELE_R10E9.1
CTD:175514 WormBase:R10E9.1 OMA:VADKVCE NextBio:888480
Uniprot:G5EFS2
Length = 320
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 51/172 (29%), Positives = 85/172 (49%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+FI GL W TT E LR F +GE+ E +V+ D AT +++G+GFITF L
Sbjct: 46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNN 105
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
++DG+ +A T + +K+F+G + + + + +F YG++E
Sbjct: 106 REHELDGKKIDPKVAFP----KRTQAKLVTKTKKVFIGGLSATSTLEDMKQYFETYGKVE 161
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKK 243
+ L FDK T + +GF + + E A ++GK + C+ A K+
Sbjct: 162 DAMLMFDKATQRHRGFGFVTFDSDEVADKVCEIHFHEINGKMVECKKAQPKE 213
Score = 125 (49.1 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 21/49 (42%), Positives = 36/49 (73%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF 119
+K+FI GL +T E ++ F YG++E+A+++ DKAT + +G+GF+TF
Sbjct: 134 KKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTF 182
>FB|FBgn0011666 [details] [associations]
symbol:msi "musashi" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IDA] [GO:0022416 "chaeta
development" evidence=IMP] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS;NAS;TAS] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=IMP;TAS] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0045182 "translation regulator
activity" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001709 "cell fate determination" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0042078 "germ-line stem cell division" evidence=IMP]
[GO:0071456 "cellular response to hypoxia" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071456 GO:GO:0022416
GO:GO:0001709 GO:GO:0019827 GO:GO:0000900 GO:GO:0042078 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 ChiTaRS:msi
FlyBase:FBgn0011666 EMBL:BT133366 RefSeq:NP_001247303.1
RefSeq:NP_733108.2 UniGene:Dm.1334 SMR:Q8IMS8 MINT:MINT-296706
STRING:Q8IMS8 EnsemblMetazoa:FBtr0084881 EnsemblMetazoa:FBtr0305218
EnsemblMetazoa:FBtr0333664 GeneID:43087 KEGG:dme:Dmel_CG5099
UCSC:CG5099-RB CTD:43087 InParanoid:Q8IMS8 OMA:PIKAFAC
GenomeRNAi:43087 NextBio:832139 Uniprot:Q8IMS8
Length = 634
Score = 253 (94.1 bits), Expect = 6.0e-20, P = 6.0e-20
Identities = 54/179 (30%), Positives = 93/179 (51%)
Query: 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGA 125
+DP KLF+ GL W T+++ L+ F+ +G + + +++ D T +S+G+GFITF+
Sbjct: 198 SDPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTV 257
Query: 126 MLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFA 185
LK P +DG+ A N N +KIFVG V D SA+++ A+F+
Sbjct: 258 EKVLKVPIHTLDGKKIDPKHATPKNRPRQANKT-----KKIFVGGVSQDTSAEEVKAYFS 312
Query: 186 CYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKA 244
+G +EE + D+QT + +GF ++ + T+ K++ C+ A K+A
Sbjct: 313 QFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKEA 371
>UNIPROTKB|F1PA19 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
Length = 264
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 53/167 (31%), Positives = 87/167 (52%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+F+ GL WDT+ + L+ F+ +GE+ + + +D TG+S+G+GFI FK L +
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 60
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
++DGRV A+A +PV +KIFVG + + + +K+ +F +GEIE
Sbjct: 61 KEHRLDGRVIDPKKAMA-----MKKDPV----KKIFVGGLNPEATEEKIREYFGEFGEIE 111
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRL 238
L D ++ K +GF +K E + L T+ G + C L
Sbjct: 112 AIELPMDPKSNKRRGFVFITFKEEEPVKKVLEKKFHTISGSK-RCGL 157
Score = 114 (45.2 bits), Expect = 0.00039, P = 0.00039
Identities = 30/96 (31%), Positives = 50/96 (52%)
Query: 45 VLSSAVARHDD-VLESVRSIA-DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVV 102
VL R D V++ +++A DP +K+F+ GL + T E +R F +GE+E +
Sbjct: 57 VLDQKEHRLDGRVIDPKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIEL 115
Query: 103 ILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDG 138
+D + K +G+ FITFK + L++ I G
Sbjct: 116 PMDPKSNKRRGFVFITFKEEEPVKKVLEKKFHTISG 151
>UNIPROTKB|F1M2S4 [details] [associations]
symbol:F1M2S4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
Length = 208
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 63/199 (31%), Positives = 97/199 (48%)
Query: 67 DPTQR-KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGA 125
+P Q KLFI GL + TT E LRS F +G L + VV+ D T +S+G+GF+T+ ++
Sbjct: 2 EPEQLLKLFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 61
Query: 126 MLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFA 185
A+ K+DGRV AV+ +S ++++KIFVG D L +F
Sbjct: 62 DAAMNARPHKVDGRVVEPKRAVSRE--DSRRPGAHLTVKKIFVGE---DTEEHHLRDYFE 116
Query: 186 CYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKK-- 243
YG+IE + D+ +GK +GFA + + ++ TV+G R A +K+
Sbjct: 117 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 176
Query: 244 AKPMGPDGGGPGNVSMNHG 262
A G G +G
Sbjct: 177 ASASSSQRGRSGQSGRGYG 195
>UNIPROTKB|Q98SJ2 [details] [associations]
symbol:dazap1 "DAZ-associated protein 1" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0003723
CTD:26528 HOVERGEN:HBG002295 KO:K14411 EMBL:AY028920
RefSeq:NP_001082088.1 UniGene:Xl.1666 ProteinModelPortal:Q98SJ2
SMR:Q98SJ2 GeneID:398218 KEGG:xla:398218 Xenbase:XB-GENE-864805
Uniprot:Q98SJ2
Length = 360
Score = 228 (85.3 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 58/196 (29%), Positives = 95/196 (48%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
KLF+ GL W TT E LRS FS YGE+ + V++ DK T +S+G+GF+ FK + L
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 132 PSKKIDGR-VTVTNLAVAG--------NSGNSTNNPVDVSLR--KIFVGNVPNDMSADKL 180
+DGR + G G P + R KIFVG +P++ +L
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETEL 130
Query: 181 LAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLAD 240
+F +G + E + +D + +P+GF ++ + A+ + GK++ + A+
Sbjct: 131 KEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 190
Query: 241 NKKAKPMGPDGGGPGN 256
+ +K P G PG+
Sbjct: 191 PRDSKSQTP--GPPGS 204
Score = 52 (23.4 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 19/60 (31%), Positives = 23/60 (38%)
Query: 371 PSSAGMPSGGYPEAGHYGLSSTSAGYPSQHHQA---AGTSPVPRVPPGGM---YPNVPPY 424
P MP+G G YG + G P A T+P P PP G Y PP+
Sbjct: 232 PQGMWMPTG--QTIGGYGQPAGRGGPPPPPSFAPFLVSTTPGPFPPPQGFPPGYATPPPF 289
>UNIPROTKB|A6H6Y0 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 OrthoDB:EOG49W2FZ
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:DAAA02018245
UniGene:Bt.52882 EMBL:BC146038 IPI:IPI00696935 SMR:A6H6Y0
STRING:A6H6Y0 Ensembl:ENSBTAT00000018540 InParanoid:A6H6Y0
Uniprot:A6H6Y0
Length = 355
Score = 243 (90.6 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 62/205 (30%), Positives = 99/205 (48%)
Query: 64 ADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHID 123
A A + K+FI GL WDTT + L+ FS +GE+ + + LD TG+S+G+GF+ FK +
Sbjct: 90 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 149
Query: 124 GAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAH 183
+ + K++G+V A A T PV +KIFVG + D +K+ +
Sbjct: 150 SVDKVMDQKEHKLNGKVIDPKRAKA----MKTKEPV----KKIFVGGLSPDTPEEKIREY 201
Query: 184 FACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKK 243
F +GE+E L D +T K +GF +K E + + V + ++A +K+
Sbjct: 202 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 261
Query: 244 A----KPMGPDGGGPGNVSMNHGDG 264
+ G GG G + G G
Sbjct: 262 QYQQQQQWGSRGGFAGR-ARGRGGG 285
>UNIPROTKB|E2RIX2 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 OMA:PNQNWNQ
InterPro:IPR012956 Pfam:PF08143 EMBL:AAEX03016719
RefSeq:XP_857957.1 Ensembl:ENSCAFT00000038801 GeneID:478450
KEGG:cfa:478450 Uniprot:E2RIX2
Length = 355
Score = 243 (90.6 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 62/205 (30%), Positives = 99/205 (48%)
Query: 64 ADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHID 123
A A + K+FI GL WDTT + L+ FS +GE+ + + LD TG+S+G+GF+ FK +
Sbjct: 90 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 149
Query: 124 GAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAH 183
+ + K++G+V A A T PV +KIFVG + D +K+ +
Sbjct: 150 SVDKVMDQKEHKLNGKVIDPKRAKA----MKTKEPV----KKIFVGGLSPDTPEEKIREY 201
Query: 184 FACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKK 243
F +GE+E L D +T K +GF +K E + + V + ++A +K+
Sbjct: 202 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 261
Query: 244 A----KPMGPDGGGPGNVSMNHGDG 264
+ G GG G + G G
Sbjct: 262 QYQQQQQWGSRGGFAGR-ARGRGGG 285
>UNIPROTKB|Q14103 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0042162 "telomeric DNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AF026126
GO:GO:0005829 GO:GO:0045893 GO:GO:0005654 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006401 GO:GO:0048255 GO:GO:0030529 EMBL:CH471057
GO:GO:0000398 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K13044 EMBL:AC124016 OrthoDB:EOG49W2FZ EMBL:D55671 EMBL:D55672
EMBL:D55673 EMBL:D55674 EMBL:AK292707 EMBL:BC002401 EMBL:BC023977
EMBL:BC026015 EMBL:X03910 EMBL:AF039575 EMBL:M94630 IPI:IPI00028888
IPI:IPI00220683 IPI:IPI00220684 IPI:IPI00220685 PIR:A24016
PIR:A44192 PIR:B48138 RefSeq:NP_001003810.1 RefSeq:NP_002129.2
RefSeq:NP_112737.1 RefSeq:NP_112738.1 UniGene:Hs.480073 PDB:1HD0
PDB:1HD1 PDB:1IQT PDB:1WTB PDB:1X0F PDB:2Z5N PDBsum:1HD0
PDBsum:1HD1 PDBsum:1IQT PDBsum:1WTB PDBsum:1X0F PDBsum:2Z5N
ProteinModelPortal:Q14103 SMR:Q14103 IntAct:Q14103
MINT:MINT-5001251 STRING:Q14103 PhosphoSite:Q14103 DMDM:13124489
SWISS-2DPAGE:Q14103 PaxDb:Q14103 PRIDE:Q14103 DNASU:3184
Ensembl:ENST00000313899 Ensembl:ENST00000352301
Ensembl:ENST00000353341 GeneID:3184 KEGG:hsa:3184 UCSC:uc003hmm.1
UCSC:uc003hmn.1 UCSC:uc003hmo.1 UCSC:uc003hmp.1 CTD:3184
GeneCards:GC04M083274 HGNC:HGNC:5036 HPA:HPA004911 MIM:601324
neXtProt:NX_Q14103 PharmGKB:PA29361 InParanoid:Q14103 OMA:PNQNWNQ
PhylomeDB:Q14103 ChiTaRS:HNRNPD EvolutionaryTrace:Q14103
GenomeRNAi:3184 NextBio:12644 PMAP-CutDB:Q14103 ArrayExpress:Q14103
Bgee:Q14103 Genevestigator:Q14103 GermOnline:ENSG00000138668
InterPro:IPR012956 Pfam:PF08143 Uniprot:Q14103
Length = 355
Score = 243 (90.6 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 62/205 (30%), Positives = 99/205 (48%)
Query: 64 ADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHID 123
A A + K+FI GL WDTT + L+ FS +GE+ + + LD TG+S+G+GF+ FK +
Sbjct: 90 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 149
Query: 124 GAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAH 183
+ + K++G+V A A T PV +KIFVG + D +K+ +
Sbjct: 150 SVDKVMDQKEHKLNGKVIDPKRAKA----MKTKEPV----KKIFVGGLSPDTPEEKIREY 201
Query: 184 FACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKK 243
F +GE+E L D +T K +GF +K E + + V + ++A +K+
Sbjct: 202 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 261
Query: 244 A----KPMGPDGGGPGNVSMNHGDG 264
+ G GG G + G G
Sbjct: 262 QYQQQQQWGSRGGFAGR-ARGRGGG 285
>UNIPROTKB|D4A1X0 [details] [associations]
symbol:D4A1X0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0097157
GO:GO:0048025 OrthoDB:EOG4HQDKF IPI:IPI00778370
ProteinModelPortal:D4A1X0 Ensembl:ENSRNOT00000061082 Uniprot:D4A1X0
Length = 312
Score = 225 (84.3 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 53/168 (31%), Positives = 86/168 (51%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
KLFI GL ++TT E LR+ + +G+L + VV+ D A+ +S+G+GF+TF + +A+
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDVAMAA 69
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
IDGRV AVA V+++K+FVG + D L +F YG+I+
Sbjct: 70 RPHSIDGRVVEPKRAVAREESGKPG--AHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKID 127
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA 239
+ D+Q+GK +GF + + ++ T +G R A
Sbjct: 128 TIEIITDRQSGK-RGFGFVTFDDHDPVDKIVLQKYHTKNGHNAEVRKA 174
Score = 113 (44.8 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHID 123
A T +KLF+ G+ DT LR F YG+++ +I D+ +GK +G+GF+TF D
Sbjct: 95 AHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGK-RGFGFVTFDDHD 151
Score = 39 (18.8 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 248 GPDGGGPGNVSMNHGDGMG 266
G GGGPG N G G G
Sbjct: 255 GYGGGGPGYG--NQGGGYG 271
Score = 37 (18.1 bits), Expect = 3.3e-19, Sum P(2) = 3.3e-19
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 248 GPDGGGPGNVSMNHGDGMG 266
G G GPG+ DG G
Sbjct: 204 GNSGPGPGSNFRGGSDGYG 222
>WB|WBGene00001999 [details] [associations]
symbol:hrp-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040015 "negative regulation of
multicellular organism growth" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0000781 "chromosome, telomeric region" evidence=IDA]
[GO:0031581 "hemidesmosome assembly" evidence=IGI] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0003723 GO:GO:0040035 GO:GO:0030529
GO:GO:0040015 GO:GO:0000398 GO:GO:0000781 eggNOG:COG0724
GO:GO:0031581 GeneTree:ENSGT00700000104255 KO:K12741 EMBL:D10877
EMBL:FO081370 PIR:S35500 RefSeq:NP_001023199.1
RefSeq:NP_001040944.1 RefSeq:NP_001040945.1 RefSeq:NP_500326.2
UniGene:Cel.7537 ProteinModelPortal:Q22037 SMR:Q22037 IntAct:Q22037
STRING:Q22037 PaxDb:Q22037 PRIDE:Q22037 EnsemblMetazoa:F42A6.7a.1
EnsemblMetazoa:F42A6.7a.2 GeneID:177101 KEGG:cel:CELE_F42A6.7
UCSC:F42A6.7a.1 CTD:177101 WormBase:F42A6.7a WormBase:F42A6.7b
WormBase:F42A6.7c WormBase:F42A6.7d InParanoid:Q22037 OMA:YGGGWGQ
NextBio:895332 Uniprot:Q22037
Length = 346
Score = 227 (85.0 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
Identities = 50/175 (28%), Positives = 90/175 (51%)
Query: 64 ADADPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHI 122
A +P RK+F+ GL +TT + +R +S +GE+ + +V+ D T +S+G+GF+TF
Sbjct: 15 ASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGK 74
Query: 123 DGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLA 182
A+K+ IDG+ AV + N + + +VS ++++V V D + D L
Sbjct: 75 TEVDAAMKQRPHIIDGKTVDPKRAVPRDDKNRSES--NVSTKRLYVSGVREDHTEDMLTE 132
Query: 183 HFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCR 237
+F YG + + + DK T KP+GF + + ++ V+G + + R
Sbjct: 133 YFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVR 187
Score = 50 (22.7 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 248 GPDGGGPGNVSMNHGDGMG 266
GP GGG G ++G G G
Sbjct: 243 GPGGGGQGGYGGDYGGGWG 261
>MGI|MGI:101947 [details] [associations]
symbol:Hnrnpd "heterogeneous nuclear ribonucleoprotein D"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005829 "cytosol" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0042162
"telomeric DNA binding" evidence=ISO] [GO:0043488 "regulation of
mRNA stability" evidence=IMP] [GO:0048255 "mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:101947 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0048255 GO:GO:0030529
GO:GO:0043488 GO:GO:0042162 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 EMBL:U11273 EMBL:U11274
EMBL:BC011172 EMBL:BC049098 IPI:IPI00230086 IPI:IPI00330958
IPI:IPI00336873 IPI:IPI00336874 PIR:I49069 PIR:I49070
RefSeq:NP_001070733.1 RefSeq:NP_001070734.1 RefSeq:NP_001070735.1
RefSeq:NP_031542.2 UniGene:Mm.150231 ProteinModelPortal:Q60668
SMR:Q60668 DIP:DIP-31411N IntAct:Q60668 STRING:Q60668
PhosphoSite:Q60668 PaxDb:Q60668 PRIDE:Q60668
Ensembl:ENSMUST00000019128 Ensembl:ENSMUST00000172361 GeneID:11991
KEGG:mmu:11991 UCSC:uc008ygt.1 UCSC:uc008ygu.1 InParanoid:Q60668
NextBio:280159 Bgee:Q60668 Genevestigator:Q60668
GermOnline:ENSMUSG00000000568 Uniprot:Q60668
Length = 355
Score = 242 (90.2 bits), Expect = 2.6e-19, P = 2.6e-19
Identities = 62/205 (30%), Positives = 99/205 (48%)
Query: 64 ADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHID 123
A A + K+FI GL WDTT + L+ FS +GE+ + + LD TG+S+G+GF+ FK +
Sbjct: 90 AAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 149
Query: 124 GAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAH 183
+ + K++G+V A A T PV +KIFVG + D +K+ +
Sbjct: 150 SVDKVMDQKEHKLNGKVIDPKRAKA----MKTKEPV----KKIFVGGLSPDTPEEKIREY 201
Query: 184 FACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKK 243
F +GE+E L D +T K +GF +K E + + V + ++A +K+
Sbjct: 202 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 261
Query: 244 A----KPMGPDGGGPGNVSMNHGDG 264
+ G GG G + G G
Sbjct: 262 QYQQQQQWGSRGGFAGR-ARGRGGG 285
>FB|FBgn0260943 [details] [associations]
symbol:Rbp6 "RNA-binding protein 6" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
EMBL:AE014296 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 eggNOG:COG0724 KO:K14411 GeneTree:ENSGT00700000104255
GO:GO:0048864 OMA:ENYISAA EMBL:AY122226 EMBL:S51715 PIR:F48110
RefSeq:NP_001097631.1 RefSeq:NP_001097632.1 RefSeq:NP_730245.2
UniGene:Dm.22292 HSSP:Q61474 ProteinModelPortal:Q9VVE5 SMR:Q9VVE5
DIP:DIP-19056N IntAct:Q9VVE5 MINT:MINT-918255
EnsemblMetazoa:FBtr0075285 GeneID:39919 KEGG:dme:Dmel_CG32169
UCSC:CG32169-RA CTD:39919 FlyBase:FBgn0260943 InParanoid:Q9VVE5
OrthoDB:EOG4MSBF6 GenomeRNAi:39919 NextBio:816085 Bgee:Q9VVE5
Uniprot:Q9VVE5
Length = 369
Score = 243 (90.6 bits), Expect = 2.9e-19, P = 2.9e-19
Identities = 54/176 (30%), Positives = 98/176 (55%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+FI GL W T+ E LR F YG++ EA+V+ D T +S+G+GF+TF + L +
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 89
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVS-LRKIFVGNVPNDMSADKLLAHFACYGEI 190
+ ++DG+ +A + +P V+ +KIFVG + + + + ++F +G I
Sbjct: 90 GTHELDGKKVDPKVAFPRRA-----HPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPI 144
Query: 191 EEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKP 246
E+ L FDKQT + +GF +++ + +VD + + ++N ++ + KKA+P
Sbjct: 145 EDAMLMFDKQTNRHRGFGFVTFQSED-----VVDKVCEIHFHEINNKMVECKKAQP 195
Score = 126 (49.4 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 21/53 (39%), Positives = 37/53 (69%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHID 123
+K+F+ GL TT E ++S F +G +E+A+++ DK T + +G+GF+TF+ D
Sbjct: 118 KKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSED 170
>RGD|1305280 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10116 "Rattus
norvegicus" [GO:0001893 "maternal placenta development"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005844 "polysome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305280 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH474029 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
OrthoDB:EOG40ZQXT OMA:GGYDMYN IPI:IPI00365961 EMBL:BC098930
RefSeq:NP_001020913.1 UniGene:Rn.16769 SMR:Q4KLZ3 GeneID:362836
KEGG:rno:362836 UCSC:RGD:1305280 InParanoid:Q4KLZ3 NextBio:681451
Genevestigator:Q4KLZ3 Uniprot:Q4KLZ3
Length = 405
Score = 232 (86.7 bits), Expect = 4.0e-19, Sum P(2) = 4.0e-19
Identities = 58/193 (30%), Positives = 94/193 (48%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
KLF+ GL W TT E LRS FS YGE+ + V++ DK T +S+G+GF+ FK + L
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 132 PSKKIDGR-VTVTNLAVAGNSGNSTN------NPVDVSLR--KIFVGNVPNDMSADKLLA 182
+DGR + G T P S + KIFVG +P++ +L
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWKGPRSDSSKSNKIFVGGIPHNCGETELRE 130
Query: 183 HFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNK 242
+F +G + E + +D + +P+GF ++ + A+ + GK++ + A+ +
Sbjct: 131 YFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 190
Query: 243 KAKPMGPDGGGPG 255
+K P G PG
Sbjct: 191 DSKNQAP--GQPG 201
Score = 48 (22.0 bits), Expect = 4.0e-19, Sum P(2) = 4.0e-19
Identities = 20/67 (29%), Positives = 25/67 (37%)
Query: 367 YRLPPSSAGMPSGGYPEAGHYGLSSTSAGYPSQHH--QAAGTSPV------PRVPPGGMY 418
Y PP+ G P P Y +S+ G+P Q G P P PP +
Sbjct: 245 YGPPPAGRGAPPPPPPFTS-YIVSTPPGGFPPPQGFPQGYGAPPQFSFGYGPPPPPPDQF 303
Query: 419 --PNVPP 423
P VPP
Sbjct: 304 APPGVPP 310
>UNIPROTKB|F1MS42 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:DAAA02045450 EMBL:DAAA02045451 IPI:IPI00718423
Ensembl:ENSBTAT00000012926 Uniprot:F1MS42
Length = 342
Score = 239 (89.2 bits), Expect = 4.7e-19, P = 4.7e-19
Identities = 55/188 (29%), Positives = 100/188 (53%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+FI GL W TT EGLR F +GE++E +V+ D T +S+G+GF+TF G L +
Sbjct: 1 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 60
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVS-LRKIFVGNVPNDMSADKLLAHFACYGEI 190
++D + +A + P V+ +KIFVG + + + + + +F +G++
Sbjct: 61 SRHELDSKTIDPKVAFPRRA-----QPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKV 115
Query: 191 EEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKP---M 247
++ L FDK T + +GF +++ + +V+ + + ++N ++ + KKA+P M
Sbjct: 116 DDAMLMFDKTTNRHRGFGFVTFESED-----IVEKVCEIHFHEINNKMVECKKAQPKEVM 170
Query: 248 GPDGGGPG 255
P G G
Sbjct: 171 SPTGSARG 178
Score = 124 (48.7 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 19/53 (35%), Positives = 38/53 (71%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHID 123
+K+F+ GL +TT E ++ F +G++++A+++ DK T + +G+GF+TF+ D
Sbjct: 89 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 141
>RGD|620365 [details] [associations]
symbol:Hnrpd "heterogeneous nuclear ribonucleoprotein D"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000291 "nuclear-transcribed mRNA catabolic
process, exonucleolytic" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISO;ISS] [GO:0003729 "mRNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006913 "nucleocytoplasmic transport"
evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO;ISS] [GO:0042162 "telomeric DNA binding"
evidence=IEA;ISO;ISS] [GO:0043488 "regulation of mRNA stability"
evidence=IEA;ISO] [GO:0048255 "mRNA stabilization" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006913 GO:GO:0048255 GO:GO:0030529
GO:GO:0042162 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044
OrthoDB:EOG49W2FZ GermOnline:ENSRNOG00000002292 InterPro:IPR012956
Pfam:PF08143 EMBL:AB046615 EMBL:AB046616 EMBL:AB046617
EMBL:AB046618 IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384
IPI:IPI00231385 RefSeq:NP_001076008.1 RefSeq:NP_001076009.1
RefSeq:NP_001076010.1 RefSeq:NP_077380.2 UniGene:Rn.94022
ProteinModelPortal:Q9JJ54 SMR:Q9JJ54 STRING:Q9JJ54
PhosphoSite:Q9JJ54 PRIDE:Q9JJ54 GeneID:79256 KEGG:rno:79256
UCSC:RGD:620365 CTD:79256 InParanoid:Q9JJ54 NextBio:614748
ArrayExpress:Q9JJ54 Genevestigator:Q9JJ54 GO:GO:0000291
Uniprot:Q9JJ54
Length = 353
Score = 240 (89.5 bits), Expect = 5.1e-19, P = 5.1e-19
Identities = 61/205 (29%), Positives = 99/205 (48%)
Query: 64 ADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHID 123
A A + K+FI GL WDTT + L+ FS +G++ + + LD TG+S+G+GF+ FK +
Sbjct: 88 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESE 147
Query: 124 GAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAH 183
+ + K++G+V A A T PV +KIFVG + D +K+ +
Sbjct: 148 SVDKVMDQKEHKLNGKVIDPKRAKA----MKTKEPV----KKIFVGGLSPDTPEEKIREY 199
Query: 184 FACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKK 243
F +GE+E L D +T K +GF +K E + + V + ++A +K+
Sbjct: 200 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 259
Query: 244 A----KPMGPDGGGPGNVSMNHGDG 264
+ G GG G + G G
Sbjct: 260 QYQQQQQWGSRGGFAGR-ARGRGGG 283
>UNIPROTKB|Q9JJ54 [details] [associations]
symbol:Hnrnpd "Heterogeneous nuclear ribonucleoprotein D0"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0005829
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006913 GO:GO:0048255 GO:GO:0030529 GO:GO:0042162
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044 OrthoDB:EOG49W2FZ
GermOnline:ENSRNOG00000002292 InterPro:IPR012956 Pfam:PF08143
EMBL:AB046615 EMBL:AB046616 EMBL:AB046617 EMBL:AB046618
IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384 IPI:IPI00231385
RefSeq:NP_001076008.1 RefSeq:NP_001076009.1 RefSeq:NP_001076010.1
RefSeq:NP_077380.2 UniGene:Rn.94022 ProteinModelPortal:Q9JJ54
SMR:Q9JJ54 STRING:Q9JJ54 PhosphoSite:Q9JJ54 PRIDE:Q9JJ54
GeneID:79256 KEGG:rno:79256 UCSC:RGD:620365 CTD:79256
InParanoid:Q9JJ54 NextBio:614748 ArrayExpress:Q9JJ54
Genevestigator:Q9JJ54 GO:GO:0000291 Uniprot:Q9JJ54
Length = 353
Score = 240 (89.5 bits), Expect = 5.1e-19, P = 5.1e-19
Identities = 61/205 (29%), Positives = 99/205 (48%)
Query: 64 ADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHID 123
A A + K+FI GL WDTT + L+ FS +G++ + + LD TG+S+G+GF+ FK +
Sbjct: 88 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESE 147
Query: 124 GAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAH 183
+ + K++G+V A A T PV +KIFVG + D +K+ +
Sbjct: 148 SVDKVMDQKEHKLNGKVIDPKRAKA----MKTKEPV----KKIFVGGLSPDTPEEKIREY 199
Query: 184 FACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKK 243
F +GE+E L D +T K +GF +K E + + V + ++A +K+
Sbjct: 200 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 259
Query: 244 A----KPMGPDGGGPGNVSMNHGDG 264
+ G GG G + G G
Sbjct: 260 QYQQQQQWGSRGGFAGR-ARGRGGG 283
>UNIPROTKB|E2RJS6 [details] [associations]
symbol:E2RJS6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03015762
Ensembl:ENSCAFT00000024318 Uniprot:E2RJS6
Length = 316
Score = 231 (86.4 bits), Expect = 5.1e-19, P = 5.1e-19
Identities = 64/211 (30%), Positives = 100/211 (47%)
Query: 61 RSIADADPTQR-KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF 119
+S + +P Q KLFIRGL ++TT E LRS F +G L VV+ D T +S+G+GF+ F
Sbjct: 3 KSESPKEPEQLWKLFIRGLSFETTDESLRSHFEQWGTLTGCVVMRDPNTKRSRGFGFVMF 62
Query: 120 KHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADK 179
++ A+ K++GRV V+ +S ++++KIFVG + D +
Sbjct: 63 ATVEEVDAAMNARPNKVNGRVLEPKRFVSRE--DSQRPAAYLTVKKIFVGGIKEDTEEHE 120
Query: 180 LLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCR-- 237
+F YG+ E + D+ +GK +GFA + + ++ TV+G R
Sbjct: 121 --DYFEQYGKFEVIEVMTDQGSGKKRGFAFVTFDNHDSVDQIVIQKYHTVNGHSCEVRKA 178
Query: 238 LADNKKAKPMGPDGG--GPGNVSMNHGDGMG 266
L + A G G GN G G G
Sbjct: 179 LLKQEMASASFSQRGQSGSGNFGGGRGGGFG 209
>UNIPROTKB|G3V6A5 [details] [associations]
symbol:Hnrpd "Heterogeneous nuclear ribonucleoprotein D,
isoform CRA_c" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 RefSeq:NP_001076008.1 UniGene:Rn.94022 GeneID:79256
KEGG:rno:79256 CTD:79256 NextBio:614748 EMBL:CH474022
Ensembl:ENSRNOT00000003173 Uniprot:G3V6A5
Length = 334
Score = 237 (88.5 bits), Expect = 5.5e-19, P = 5.5e-19
Identities = 59/197 (29%), Positives = 96/197 (48%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+FI GL WDTT + L+ FS +G++ + + LD TG+S+G+GF+ FK + + +
Sbjct: 77 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 136
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
K++G+V A A T PV +KIFVG + D +K+ +F +GE+E
Sbjct: 137 KEHKLNGKVIDPKRAKA----MKTKEPV----KKIFVGGLSPDTPEEKIREYFGGFGEVE 188
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKA----KPM 247
L D +T K +GF +K E + + V + ++A +K+ +
Sbjct: 189 SIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQW 248
Query: 248 GPDGGGPGNVSMNHGDG 264
G GG G + G G
Sbjct: 249 GSRGGFAGR-ARGRGGG 264
Score = 114 (45.2 bits), Expect = 0.00064, P = 0.00064
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 61 RSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFK 120
+++ +P +K+F+ GL DT E +R F +GE+E + +D T K +G+ FITFK
Sbjct: 152 KAMKTKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK 210
Query: 121 HIDGAMLALKEPSKKI 136
+EP KKI
Sbjct: 211 E--------EEPVKKI 218
Score = 113 (44.8 bits), Expect = 0.00082, P = 0.00082
Identities = 36/133 (27%), Positives = 62/133 (46%)
Query: 123 DGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNP---VDVSLR-----KIFVGNVPND 174
+GAM+A + + G + A G G ST +D S K+F+G + D
Sbjct: 27 EGAMVAAAQGAAAAAGSGSGGGSAPGGTEGGSTEAEGAKIDASKNEEDEGKMFIGGLSWD 86
Query: 175 MSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQL 234
+ L +F+ +G++ + L D TG+ +GF ++K +E VD + +L
Sbjct: 87 TTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESES-----VDKVMDQKEHKL 141
Query: 235 NCRLADNKKAKPM 247
N ++ D K+AK M
Sbjct: 142 NGKVIDPKRAKAM 154
>UNIPROTKB|O43347 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0009725 "response to
hormone stimulus" evidence=IEA] [GO:0030855 "epithelial cell
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0007399 "nervous system development"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
EMBL:AB012851 EMBL:AC003982 EMBL:AB072590 EMBL:AB072591
EMBL:AB072592 EMBL:AB073212 IPI:IPI00001007 RefSeq:NP_002433.1
UniGene:Hs.158311 ProteinModelPortal:O43347 SMR:O43347
IntAct:O43347 MINT:MINT-1432501 STRING:O43347 PhosphoSite:O43347
PaxDb:O43347 PRIDE:O43347 DNASU:4440 Ensembl:ENST00000257552
GeneID:4440 KEGG:hsa:4440 UCSC:uc001tye.1 CTD:4440
GeneCards:GC12M120779 HGNC:HGNC:7330 HPA:CAB022337 MIM:603328
neXtProt:NX_O43347 PharmGKB:PA31137 InParanoid:O43347 OMA:GLPGSHP
OrthoDB:EOG48GW3J GenomeRNAi:4440 NextBio:17313 ArrayExpress:O43347
Bgee:O43347 CleanEx:HS_MSI1 Genevestigator:O43347
GermOnline:ENSG00000135097 Uniprot:O43347
Length = 362
Score = 240 (89.5 bits), Expect = 6.8e-19, P = 6.8e-19
Identities = 57/193 (29%), Positives = 102/193 (52%)
Query: 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAM 126
DP K+FI GL W TT EGLR F +GE++E +V+ D T +S+G+GF+TF G
Sbjct: 18 DPC--KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVD 75
Query: 127 LALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVS-LRKIFVGNVPNDMSADKLLAHFA 185
L + ++D + +A + P V+ +KIFVG + + + + + +F
Sbjct: 76 KVLAQSRHELDSKTIDPKVAFPRRA-----QPKMVTRTKKIFVGGLSVNTTVEDVKQYFE 130
Query: 186 CYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAK 245
+G++++ L FDK T + +GF +++ + +V+ + + ++N ++ + KKA+
Sbjct: 131 QFGKVDDAMLMFDKTTNRHRGFGFVTFESED-----IVEKVCEIHFHEINNKMVECKKAQ 185
Query: 246 P---MGPDGGGPG 255
P M P G G
Sbjct: 186 PKEVMSPTGSARG 198
>UNIPROTKB|D4A2D2 [details] [associations]
symbol:D4A2D2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
IPI:IPI00559583 ProteinModelPortal:D4A2D2
Ensembl:ENSRNOT00000032337 Uniprot:D4A2D2
Length = 262
Score = 227 (85.0 bits), Expect = 8.0e-19, P = 8.0e-19
Identities = 63/185 (34%), Positives = 96/185 (51%)
Query: 61 RSIADADPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF 119
+S + +P Q RKLFI GL ++TT E LRS F +G L E VV+ D T +S+G+GF+T+
Sbjct: 3 KSESPKEPEQLRKLFIGGLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGFVTY 62
Query: 120 KHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADK 179
++ A+ K+DGRV AV+ +S + V KIFVG + D
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPERAVSREDSHS----LTV---KIFVGGIKEDTEEHY 115
Query: 180 LLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNC-RL 238
L + YG+IE + D+ +GK +GFA + + ++ TV+ NC R
Sbjct: 116 LRDYSEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDYDSVDKIVIRKYHTVNDH--NCVRK 173
Query: 239 ADNKK 243
A +K+
Sbjct: 174 ALSKQ 178
>MGI|MGI:1917498 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0035613 "RNA stem-loop binding"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917498 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
ChiTaRS:DAZAP1 EMBL:AF225910 EMBL:BC049355 IPI:IPI00406492
IPI:IPI00406493 RefSeq:NP_001116076.1 RefSeq:NP_001116077.1
RefSeq:NP_573451.2 UniGene:Mm.148693 ProteinModelPortal:Q9JII5
SMR:Q9JII5 STRING:Q9JII5 PhosphoSite:Q9JII5
REPRODUCTION-2DPAGE:Q9JII5 PaxDb:Q9JII5 PRIDE:Q9JII5
Ensembl:ENSMUST00000092305 Ensembl:ENSMUST00000105362 GeneID:70248
KEGG:mmu:70248 UCSC:uc007gcl.2 UCSC:uc007gcm.2
GeneTree:ENSGT00700000104255 InParanoid:Q9JII5 NextBio:331250
Bgee:Q9JII5 CleanEx:MM_DAZAP1 Genevestigator:Q9JII5
GermOnline:ENSMUSG00000069565 Uniprot:Q9JII5
Length = 406
Score = 230 (86.0 bits), Expect = 8.3e-19, Sum P(2) = 8.3e-19
Identities = 58/194 (29%), Positives = 94/194 (48%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
KLF+ GL W TT E LRS FS YGE+ + V++ DK T +S+G+GF+ FK + L
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 132 PSKKIDGR-VTVTNLAVAGNSGNSTN-------NPVDVSLR--KIFVGNVPNDMSADKLL 181
+DGR + G T P S + KIFVG +P++ +L
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELR 130
Query: 182 AHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADN 241
+F +G + E + +D + +P+GF ++ + A+ + GK++ + A+
Sbjct: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 190
Query: 242 KKAKPMGPDGGGPG 255
+ +K P G PG
Sbjct: 191 RDSKNQAP--GQPG 202
Score = 48 (22.0 bits), Expect = 8.3e-19, Sum P(2) = 8.3e-19
Identities = 20/67 (29%), Positives = 25/67 (37%)
Query: 367 YRLPPSSAGMPSGGYPEAGHYGLSSTSAGYPSQHH--QAAGTSPV------PRVPPGGMY 418
Y PP+ G P P Y +S+ G+P Q G P P PP +
Sbjct: 246 YGPPPAGRGAPPPPPPFTS-YIVSTPPGGFPPPQGFPQGYGAPPQFSFGYGPPPPPPDQF 304
Query: 419 --PNVPP 423
P VPP
Sbjct: 305 APPGVPP 311
>UNIPROTKB|F2Z3S1 [details] [associations]
symbol:Dazap1 "Protein Dazap1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305280 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 IPI:IPI00365961
ProteinModelPortal:F2Z3S1 SMR:F2Z3S1 PRIDE:F2Z3S1
Ensembl:ENSRNOT00000046886 Uniprot:F2Z3S1
Length = 406
Score = 230 (86.0 bits), Expect = 8.3e-19, Sum P(2) = 8.3e-19
Identities = 58/194 (29%), Positives = 94/194 (48%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
KLF+ GL W TT E LRS FS YGE+ + V++ DK T +S+G+GF+ FK + L
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 132 PSKKIDGR-VTVTNLAVAGNSGNSTN-------NPVDVSLR--KIFVGNVPNDMSADKLL 181
+DGR + G T P S + KIFVG +P++ +L
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELR 130
Query: 182 AHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADN 241
+F +G + E + +D + +P+GF ++ + A+ + GK++ + A+
Sbjct: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 190
Query: 242 KKAKPMGPDGGGPG 255
+ +K P G PG
Sbjct: 191 RDSKNQAP--GQPG 202
Score = 48 (22.0 bits), Expect = 8.3e-19, Sum P(2) = 8.3e-19
Identities = 20/67 (29%), Positives = 25/67 (37%)
Query: 367 YRLPPSSAGMPSGGYPEAGHYGLSSTSAGYPSQHH--QAAGTSPV------PRVPPGGMY 418
Y PP+ G P P Y +S+ G+P Q G P P PP +
Sbjct: 246 YGPPPAGRGAPPPPPPFTS-YIVSTPPGGFPPPQGFPQGYGAPPQFSFGYGPPPPPPDQF 304
Query: 419 --PNVPP 423
P VPP
Sbjct: 305 APPGVPP 311
>UNIPROTKB|E1BAK6 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:DAAA02020260 IPI:IPI00701555 Ensembl:ENSBTAT00000026274
Uniprot:E1BAK6
Length = 396
Score = 229 (85.7 bits), Expect = 9.1e-19, Sum P(2) = 9.1e-19
Identities = 59/194 (30%), Positives = 94/194 (48%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
KLF+ GL W TT E LRS FS YGE+ + V++ DK T +S+G+GF+ FK + L
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 132 PSKKIDGR-VTVTNLAVAGNSGNSTN-------NP-VDVSL-RKIFVGNVPNDMSADKLL 181
+DGR + G T P D S KIFVG +P++ +L
Sbjct: 61 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELR 120
Query: 182 AHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADN 241
+F +G + E + +D + +P+GF ++ + A+ + GK++ + A+
Sbjct: 121 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 180
Query: 242 KKAKPMGPDGGGPG 255
+ +K P G PG
Sbjct: 181 RDSKSQAP--GQPG 192
Score = 48 (22.0 bits), Expect = 9.1e-19, Sum P(2) = 9.1e-19
Identities = 20/67 (29%), Positives = 25/67 (37%)
Query: 367 YRLPPSSAGMPSGGYPEAGHYGLSSTSAGYPSQHH--QAAGTSPV------PRVPPGGMY 418
Y PP+ G P P Y +S+ G+P Q G P P PP +
Sbjct: 236 YGPPPAGRGAPPPPPPFTS-YIVSTPPGGFPPPQGFPQGYGAPPQFSFGYGPPPPPPDQF 294
Query: 419 --PNVPP 423
P VPP
Sbjct: 295 APPGVPP 301
>MGI|MGI:107376 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009725
"response to hormone stimulus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107376 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0009725 GO:GO:0005844
GO:GO:0030855 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 OMA:GLPGSHP OrthoDB:EOG48GW3J
EMBL:D49654 EMBL:AK084019 IPI:IPI00121300 IPI:IPI00462260
RefSeq:NP_032655.1 UniGene:Mm.5077 PDB:1UAW PDB:2MSS PDB:2MST
PDB:2RS2 PDBsum:1UAW PDBsum:2MSS PDBsum:2MST PDBsum:2RS2
ProteinModelPortal:Q61474 SMR:Q61474 STRING:Q61474
PhosphoSite:Q61474 PaxDb:Q61474 PRIDE:Q61474 DNASU:17690
Ensembl:ENSMUST00000150779 GeneID:17690 KEGG:mmu:17690
UCSC:uc008zdu.1 UCSC:uc008zdv.1 InParanoid:Q61474 ChiTaRS:MSI1
EvolutionaryTrace:Q61474 NextBio:292270 Bgee:Q61474 CleanEx:MM_MSI1
Genevestigator:Q61474 GermOnline:ENSMUSG00000054256 Uniprot:Q61474
Length = 362
Score = 239 (89.2 bits), Expect = 9.9e-19, P = 9.9e-19
Identities = 57/193 (29%), Positives = 102/193 (52%)
Query: 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAM 126
DP K+FI GL W TT EGLR F +GE++E +V+ D T +S+G+GF+TF G
Sbjct: 18 DPC--KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVD 75
Query: 127 LALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVS-LRKIFVGNVPNDMSADKLLAHFA 185
L + ++D + +A + P V+ +KIFVG + + + + + +F
Sbjct: 76 KVLAQSRHELDSKTIDPKVAFPRRA-----QPKMVTRTKKIFVGGLSVNTTVEDVKHYFE 130
Query: 186 CYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAK 245
+G++++ L FDK T + +GF +++ + +V+ + + ++N ++ + KKA+
Sbjct: 131 QFGKVDDAMLMFDKTTNRHRGFGFVTFESED-----IVEKVCEIHFHEINNKMVECKKAQ 185
Query: 246 P---MGPDGGGPG 255
P M P G G
Sbjct: 186 PKEVMSPTGSARG 198
>RGD|628778 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=NAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
evidence=IEA;ISO] [GO:0009725 "response to hormone stimulus"
evidence=IMP] [GO:0030855 "epithelial cell differentiation"
evidence=IEP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 239 (89.2 bits), Expect = 9.9e-19, P = 9.9e-19
Identities = 57/193 (29%), Positives = 102/193 (52%)
Query: 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAM 126
DP K+FI GL W TT EGLR F +GE++E +V+ D T +S+G+GF+TF G
Sbjct: 18 DPC--KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVD 75
Query: 127 LALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVS-LRKIFVGNVPNDMSADKLLAHFA 185
L + ++D + +A + P V+ +KIFVG + + + + + +F
Sbjct: 76 KVLAQSRHELDSKTIDPKVAFPRRA-----QPKMVTRTKKIFVGGLSVNTTVEDVKHYFE 130
Query: 186 CYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAK 245
+G++++ L FDK T + +GF +++ + +V+ + + ++N ++ + KKA+
Sbjct: 131 QFGKVDDAMLMFDKTTNRHRGFGFVTFESED-----IVEKVCEIHFHEINNKMVECKKAQ 185
Query: 246 P---MGPDGGGPG 255
P M P G G
Sbjct: 186 PKEVMSPTGSARG 198
>UNIPROTKB|Q8K3P4 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 239 (89.2 bits), Expect = 9.9e-19, P = 9.9e-19
Identities = 57/193 (29%), Positives = 102/193 (52%)
Query: 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAM 126
DP K+FI GL W TT EGLR F +GE++E +V+ D T +S+G+GF+TF G
Sbjct: 18 DPC--KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVD 75
Query: 127 LALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVS-LRKIFVGNVPNDMSADKLLAHFA 185
L + ++D + +A + P V+ +KIFVG + + + + + +F
Sbjct: 76 KVLAQSRHELDSKTIDPKVAFPRRA-----QPKMVTRTKKIFVGGLSVNTTVEDVKHYFE 130
Query: 186 CYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAK 245
+G++++ L FDK T + +GF +++ + +V+ + + ++N ++ + KKA+
Sbjct: 131 QFGKVDDAMLMFDKTTNRHRGFGFVTFESED-----IVEKVCEIHFHEINNKMVECKKAQ 185
Query: 246 P---MGPDGGGPG 255
P M P G G
Sbjct: 186 PKEVMSPTGSARG 198
>UNIPROTKB|Q5ZI72 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 EMBL:AJ720912 IPI:IPI00591109
RefSeq:NP_001026313.1 UniGene:Gga.4605 HSSP:Q14103
ProteinModelPortal:Q5ZI72 SMR:Q5ZI72 PRIDE:Q5ZI72
Ensembl:ENSGALT00000018235 GeneID:422601 KEGG:gga:422601 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 NextBio:20825211
Uniprot:Q5ZI72
Length = 301
Score = 226 (84.6 bits), Expect = 1.0e-18, P = 1.0e-18
Identities = 57/197 (28%), Positives = 90/197 (45%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+FI GL WDT+ + L S +GE+ + + D TG+S+G+GF+ FK L+
Sbjct: 31 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 90
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
K+DG++ A A G P +K+FVG + D S +++ +F +GEIE
Sbjct: 91 KEHKLDGKLIDPKRAKA-LKGKEP--P-----KKVFVGGLSPDTSEEQIKEYFGAFGEIE 142
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKA--KPMGP 249
L D +T + +GF Y E + L + + ++A K+ +
Sbjct: 143 NIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQ 202
Query: 250 DGGGPGNVSMNHGDGMG 266
GG N S G G G
Sbjct: 203 QKGGKSNASGGRGGGRG 219
>UNIPROTKB|I3LB68 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:FP325262 RefSeq:NP_001231435.1
UniGene:Ssc.1299 Ensembl:ENSSSCT00000023438 GeneID:100625005
KEGG:ssc:100625005 Uniprot:I3LB68
Length = 406
Score = 229 (85.7 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 59/194 (30%), Positives = 94/194 (48%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
KLF+ GL W TT E LRS FS YGE+ + V++ DK T +S+G+GF+ FK + L
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 132 PSKKIDGR-VTVTNLAVAGNSGNSTN-------NP-VDVSL-RKIFVGNVPNDMSADKLL 181
+DGR + G T P D S KIFVG +P++ +L
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELR 130
Query: 182 AHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADN 241
+F +G + E + +D + +P+GF ++ + A+ + GK++ + A+
Sbjct: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 190
Query: 242 KKAKPMGPDGGGPG 255
+ +K P G PG
Sbjct: 191 RDSKSQAP--GQPG 202
Score = 48 (22.0 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 20/67 (29%), Positives = 25/67 (37%)
Query: 367 YRLPPSSAGMPSGGYPEAGHYGLSSTSAGYPSQHH--QAAGTSPV------PRVPPGGMY 418
Y PP+ G P P Y +S+ G+P Q G P P PP +
Sbjct: 246 YGPPPAGRGAPPPPPPFTS-YIVSTPPGGFPPPQGFPQGYGAPPQFSFGYGPPPPPPDQF 304
Query: 419 --PNVPP 423
P VPP
Sbjct: 305 APPGVPP 311
>UNIPROTKB|E2R6E4 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
RefSeq:XP_003432858.1 Ensembl:ENSCAFT00000031038 GeneID:100683271
KEGG:cfa:100683271 Uniprot:E2R6E4
Length = 407
Score = 229 (85.7 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 59/194 (30%), Positives = 94/194 (48%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
KLF+ GL W TT E LRS FS YGE+ + V++ DK T +S+G+GF+ FK + L
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 132 PSKKIDGR-VTVTNLAVAGNSGNSTN-------NP-VDVSL-RKIFVGNVPNDMSADKLL 181
+DGR + G T P D S KIFVG +P++ +L
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELR 130
Query: 182 AHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADN 241
+F +G + E + +D + +P+GF ++ + A+ + GK++ + A+
Sbjct: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 190
Query: 242 KKAKPMGPDGGGPG 255
+ +K P G PG
Sbjct: 191 RDSKSQAP--GQPG 202
Score = 48 (22.0 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 20/67 (29%), Positives = 25/67 (37%)
Query: 367 YRLPPSSAGMPSGGYPEAGHYGLSSTSAGYPSQHH--QAAGTSPV------PRVPPGGMY 418
Y PP+ G P P Y +S+ G+P Q G P P PP +
Sbjct: 246 YGPPPAGRGAPPPPPPFTS-YIVSTPPGGFPPPQGFPQGYGAPPQFSFGYGPPPPPPDQF 304
Query: 419 --PNVPP 423
P VPP
Sbjct: 305 APPGVPP 311
>UNIPROTKB|Q96EP5 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 eggNOG:COG0724 EMBL:AF181719 EMBL:BC012062
EMBL:AK056850 IPI:IPI00165230 IPI:IPI00335930 RefSeq:NP_061832.2
RefSeq:NP_733829.1 UniGene:Hs.222510 PDB:2DGS PDB:2DH8 PDBsum:2DGS
PDBsum:2DH8 ProteinModelPortal:Q96EP5 SMR:Q96EP5 IntAct:Q96EP5
STRING:Q96EP5 PhosphoSite:Q96EP5 DMDM:44887869
REPRODUCTION-2DPAGE:IPI00165230 PaxDb:Q96EP5 PRIDE:Q96EP5
DNASU:26528 Ensembl:ENST00000233078 Ensembl:ENST00000336761
GeneID:26528 KEGG:hsa:26528 UCSC:uc002lsm.3 UCSC:uc002lsn.3
CTD:26528 GeneCards:GC19P001407 HGNC:HGNC:2683 HPA:HPA004201
HPA:HPA004631 MIM:607430 neXtProt:NX_Q96EP5 PharmGKB:PA27153
HOGENOM:HOG000234441 HOVERGEN:HBG002295 InParanoid:Q96EP5 KO:K14411
OMA:HNLDGRN OrthoDB:EOG40ZQXT PhylomeDB:Q96EP5 ChiTaRS:DAZAP1
EvolutionaryTrace:Q96EP5 GenomeRNAi:26528 NextBio:48864
ArrayExpress:Q96EP5 Bgee:Q96EP5 CleanEx:HS_DAZAP1
Genevestigator:Q96EP5 GermOnline:ENSG00000071626 Uniprot:Q96EP5
Length = 407
Score = 229 (85.7 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 59/194 (30%), Positives = 94/194 (48%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
KLF+ GL W TT E LRS FS YGE+ + V++ DK T +S+G+GF+ FK + L
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 132 PSKKIDGR-VTVTNLAVAGNSGNSTN-------NP-VDVSL-RKIFVGNVPNDMSADKLL 181
+DGR + G T P D S KIFVG +P++ +L
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELR 130
Query: 182 AHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADN 241
+F +G + E + +D + +P+GF ++ + A+ + GK++ + A+
Sbjct: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 190
Query: 242 KKAKPMGPDGGGPG 255
+ +K P G PG
Sbjct: 191 RDSKSQAP--GQPG 202
Score = 48 (22.0 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 20/67 (29%), Positives = 25/67 (37%)
Query: 367 YRLPPSSAGMPSGGYPEAGHYGLSSTSAGYPSQHH--QAAGTSPV------PRVPPGGMY 418
Y PP+ G P P Y +S+ G+P Q G P P PP +
Sbjct: 246 YGPPPAGRGAPPPPPPFTS-YIVSTPPGGFPPPQGFPQGYGAPPQFSFGYGPPPPPPDQF 304
Query: 419 --PNVPP 423
P VPP
Sbjct: 305 APPGVPP 311
>UNIPROTKB|F1LUF2 [details] [associations]
symbol:F1LUF2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 IPI:IPI00952415
Ensembl:ENSRNOT00000042380 Uniprot:F1LUF2
Length = 238
Score = 207 (77.9 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 58/187 (31%), Positives = 86/187 (45%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
KLFI GL ++ T EGLRS F +G L +VV+ D T +S G+GF+T+ ++ A+ E
Sbjct: 1 KLFIGGLSFEKTDEGLRSHFEQWGTLTNSVVMRDPNTKRSGGFGFVTYATVEEVDAAMNE 60
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
K+D RV AV+ T + V +KIFVG V D L +F YG+I+
Sbjct: 61 RPHKVDERVLEPKRAVSREDSERTGTHLTV--KKIFVGVVKEDTEEHHLRDYFEQYGKIQ 118
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCR--LADNKKAKPMGP 249
+ K +GF F + + ++ TV G R L+ + A
Sbjct: 119 --------RQWKKEGFCFFTFDDHDSVDKIVIQKYHTVGGHTCEVRKPLSKQEMASASSS 170
Query: 250 DGGGPGN 256
G G+
Sbjct: 171 QRGRSGS 177
Score = 37 (18.1 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 244 AKPMGPDGGGPGNVSMNHGDG 264
AKP G G + S ++G G
Sbjct: 216 AKPRSQGGYGGSSSSSSYGSG 236
>UNIPROTKB|F1M3H8 [details] [associations]
symbol:F1M3H8 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 IPI:IPI00777708
ProteinModelPortal:F1M3H8 PRIDE:F1M3H8 Ensembl:ENSRNOT00000061231
Uniprot:F1M3H8
Length = 194
Score = 225 (84.3 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 50/177 (28%), Positives = 93/177 (52%)
Query: 82 TTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVT 141
T+ GLR F A+G L + VV+++ T +S+ +GF+T+ +++ A A+ +DG
Sbjct: 18 TSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTV 77
Query: 142 VTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQT 201
AV+ +S ++K+FVG + D++ L+ HF+ +G +E+ + DKQ+
Sbjct: 78 ELKRAVSRE--DSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQS 135
Query: 202 GKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKPMGPDGGGPGNVS 258
GK +GF +++ + A A V + G ++ + A K+ + GGG G+ S
Sbjct: 136 GKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKAVPKE-DIVARCGGGGGSSS 191
Score = 122 (48.0 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 38/98 (38%), Positives = 50/98 (51%)
Query: 46 LSSAVARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILD 105
L AV+R D S R A A +KLF+ GL D L FS +G +E+A +I D
Sbjct: 79 LKRAVSRED----SARPGAHAKV--KKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIAD 132
Query: 106 KATGKSKGYGFITFKHIDGAMLALKEPSKKIDG-RVTV 142
K +GK +G+GF+ F+ D A A I G RV V
Sbjct: 133 KQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEV 170
>ZFIN|ZDB-GENE-030131-185 [details] [associations]
symbol:hnrnpab "heterogeneous nuclear
ribonucleoprotein A/B" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-185
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU658205 IPI:IPI01023938 Ensembl:ENSDART00000148447
ArrayExpress:F8W4E3 Uniprot:F8W4E3
Length = 366
Score = 238 (88.8 bits), Expect = 1.5e-18, P = 1.5e-18
Identities = 61/201 (30%), Positives = 96/201 (47%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+F+ GL WDT+ + L+ FS +GE+ + + +D TG+S+G+GFI FK G L +
Sbjct: 96 KMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGVDKVLAQ 155
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
++DGR A+A PV +KIFVG + + + +++ +F +GEIE
Sbjct: 156 KEHRLDGRQIDPKKAMA-----MKKEPV----KKIFVGGLNPETTEERIREYFGAFGEIE 206
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAAL------VDPIKTVDGKQLNC--RLADNKK 243
L D ++ K +GF +K E + L V K GK+ C ++A K+
Sbjct: 207 TIELPMDPKSNKRRGFVFITFKEEEAVKKILEKKYHNVSGTKDTSGKEGLCEIKIAQPKE 266
Query: 244 AKPMGPDGGGPGNVSMNHGDG 264
GG G G G
Sbjct: 267 VYQQQQYGGRFGGGGRGRGRG 287
Score = 118 (46.6 bits), Expect = 0.00027, P = 0.00027
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALK 130
+K+F+ GL +TT E +R F A+GE+E + +D + K +G+ FITFK + L+
Sbjct: 179 KKIFVGGLNPETTEERIREYFGAFGEIETIELPMDPKSNKRRGFVFITFKEEEAVKKILE 238
Query: 131 EPSKKIDG 138
+ + G
Sbjct: 239 KKYHNVSG 246
>ZFIN|ZDB-GENE-030826-25 [details] [associations]
symbol:msi2a "musashi homolog 2a (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030826-25 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 OrthoDB:EOG48GW3J HSSP:Q61474
EMBL:CR931799 EMBL:CR931806 EMBL:BC045335 IPI:IPI00489753
RefSeq:NP_997961.1 UniGene:Dr.32677 SMR:Q7ZW10
Ensembl:ENSDART00000099473 Ensembl:ENSDART00000132096
GeneID:100002680 KEGG:dre:100002680 CTD:100002680 InParanoid:Q7ZW10
OMA:MEADASQ NextBio:20785547 Uniprot:Q7ZW10
Length = 388
Score = 234 (87.4 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 55/194 (28%), Positives = 99/194 (51%)
Query: 62 SIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKH 121
S+ D+ K+FI GL W T+ + LR F +GE+ E +V+ D T +S+G+GFITF
Sbjct: 12 SLNDSQHDPGKMFIGGLSWQTSPDSLRDYFCKFGEIRECMVMRDPTTKRSRGFGFITFAD 71
Query: 122 IDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVS-LRKIFVGNVPNDMSADKL 180
+ L +P ++D + +A + P V+ +KIFVG + + +
Sbjct: 72 VSSVDKVLAQPHHELDSKTIDPKVAFPRRA-----QPKMVTRTKKIFVGGLSASTVVEDV 126
Query: 181 LAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLAD 240
+F +G++E+ L FDK T + +GF ++ + +V+ + + ++N ++ +
Sbjct: 127 KQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENED-----IVEKVCEIHFHEINNKMVE 181
Query: 241 NKKAKP---MGPDG 251
KKA+P M P G
Sbjct: 182 CKKAQPKEVMFPPG 195
Score = 37 (18.1 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 10/38 (26%), Positives = 14/38 (36%)
Query: 372 SSAGMPSGGYPEAGHYGLSSTSAGYPSQHHQAAGTSPV 409
S+ PS +P H+ S + P A PV
Sbjct: 305 STCNSPSQHHPSPDHFKSSGANPPRPGGFPGANSPGPV 342
>ZFIN|ZDB-GENE-050320-86 [details] [associations]
symbol:msi1 "musashi homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007417 "central
nervous system development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050320-86 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007417 GO:GO:0003676 EMBL:AB698464 Uniprot:J4C3V8
Length = 349
Score = 236 (88.1 bits), Expect = 1.8e-18, P = 1.8e-18
Identities = 63/221 (28%), Positives = 115/221 (52%)
Query: 58 ESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFI 117
+S S +D+ K+FI GL W TT EGL+ F +GE++E++V+ D T +S+G+GF+
Sbjct: 7 QSNLSSSDSPHDPCKMFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGFGFV 66
Query: 118 TFKHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVS-LRKIFVGNVPNDMS 176
TF G L + ++D + +A + P V+ +KIFVG + + +
Sbjct: 67 TFVDQAGVDKVLAQTRHELDSKTIDPKVAFPRRA-----QPKLVTRTKKIFVGGLSVNTT 121
Query: 177 ADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNC 236
+ + +F +G++++ L FDK T + +GF ++ + +V+ + + ++N
Sbjct: 122 IEDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENED-----VVEKVCEIHFHEINN 176
Query: 237 RLADNKKAKP---MGPDGGGPGNVS-MNHG-D----GMGMV 268
++ + KKA+P M P G G M +G D G+GM+
Sbjct: 177 KMVECKKAQPKEVMSPTGSSRGRARVMPYGMDAFMLGIGML 217
>UNIPROTKB|F1PVY3 [details] [associations]
symbol:F1PVY3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03016228
Ensembl:ENSCAFT00000027434 Uniprot:F1PVY3
Length = 301
Score = 224 (83.9 bits), Expect = 1.8e-18, P = 1.8e-18
Identities = 64/209 (30%), Positives = 103/209 (49%)
Query: 59 SVRSIADADPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFI 117
S S + +P Q +KLFI GL ++TT E LRS F +G L VV+ D T +S+G+GF+
Sbjct: 1 SCLSQSPKEPEQLQKLFIGGLSFETTDESLRSHFE-WGTLTGCVVMRDPNTKRSRGFGFV 59
Query: 118 TFKHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSA 177
T+ ++ A+ K+DGRV AV+ + + ++++KIFVG + + +
Sbjct: 60 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQTLD--AHLTVKKIFVGGIKEN-TE 116
Query: 178 DKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCR 237
D L +F YG+IE + D+ +GK +GF + + ++ TV+G R
Sbjct: 117 DHLRDYFE-YGKIEVIEIMTDRGSGKKRGFTFVTFDDHDSVDK-IIQKYHTVNGHNCEVR 174
Query: 238 LADNKKAKPMGPDGGGPGNVSMNHGDGMG 266
A +K+ S N G G G
Sbjct: 175 KALSKQEMASASSSQSLSG-SGNFGGGCG 202
>ZFIN|ZDB-GENE-040426-1268 [details] [associations]
symbol:msi2b "musashi homolog 2b (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1268 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:BX000438
EMBL:BX510988 EMBL:BX649247 EMBL:CR848815 EMBL:BC055251
IPI:IPI00481779 RefSeq:NP_957403.1 UniGene:Dr.82489 SMR:Q7SXT6
STRING:Q7SXT6 Ensembl:ENSDART00000100194 GeneID:394084
KEGG:dre:394084 CTD:394084 InParanoid:Q7SXT6 OMA:NYISASP
NextBio:20815041 Uniprot:Q7SXT6
Length = 408
Score = 231 (86.4 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
Identities = 58/208 (27%), Positives = 101/208 (48%)
Query: 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDG 124
D+ K+FI GL W T+ + LR FS +GE+ E +V+ D T +S+G+GF+TF
Sbjct: 15 DSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADAAS 74
Query: 125 AMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVS-LRKIFVGNVPNDMSADKLLAH 183
L +P ++D + +A + P V+ +KIFVG + + + + +
Sbjct: 75 VDKVLAQPHHELDSKTIDPKVAFPRRA-----QPKMVTRTKKIFVGGLSANTVVEDVKQY 129
Query: 184 FACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKK 243
F +G++E+ L FDK T + +GF ++ + + ++ K + C+ A K+
Sbjct: 130 FEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKE 189
Query: 244 AK-PMGPDGGGPG-NVSMNHGD-GMGMV 268
P G G G +M+ GMGM+
Sbjct: 190 VMFPPGTRGRARGLPYTMDAFMLGMGML 217
Score = 43 (20.2 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 367 YRLPPSSAGMPSGGYPEAGHYGLSSTSAGYP 397
Y P S G P G+P+ G Y S G P
Sbjct: 274 YAAYPQSTG-P--GFPDYGFYSSPSDQRGPP 301
>UNIPROTKB|F1PGQ0 [details] [associations]
symbol:F1PGQ0 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03010176
Ensembl:ENSCAFT00000005615 OMA:RRYQRIT Uniprot:F1PGQ0
Length = 318
Score = 230 (86.0 bits), Expect = 2.1e-18, P = 2.1e-18
Identities = 69/208 (33%), Positives = 100/208 (48%)
Query: 67 DPTQR-KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFI---TFKHI 122
+P Q KLFI GL ++TT E LRS F +G + VV+ D T +S+G GF+ T + +
Sbjct: 9 EPEQLWKLFIGGLSFETTEESLRSHFEQWGTFTDCVVMRDPNTKRSRGVGFLMYATVEEV 68
Query: 123 DGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLA 182
D AM A P +DGRV AV+ +S ++++KIFVG + D L
Sbjct: 69 DAAMNA--RPH--VDGRVVEPKRAVSRE--DSQRPGAHLTVKKIFVGGIKEDTEEHHLRD 122
Query: 183 HFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNK 242
+F YG+IE + D+ +GK KGFA + + ++ V+G R A +K
Sbjct: 123 YFEQYGKIEVIEIMTDRGSGK-KGFAFVTFDDHDSVDKIVIQKYHPVNGHSCEVRKALSK 181
Query: 243 K----AKPMGPDGGGPGNVSMNHGDGMG 266
+ A D G GN G G G
Sbjct: 182 QEMASASSTQRDLSGSGNFGGGRGGGFG 209
>TAIR|locus:2007903 [details] [associations]
symbol:AT1G17640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 OMA:GHQTGYK IPI:IPI00519530 RefSeq:NP_173208.1
UniGene:At.51654 ProteinModelPortal:F4I906 SMR:F4I906 PRIDE:F4I906
EnsemblPlants:AT1G17640.1 GeneID:838341 KEGG:ath:AT1G17640
Uniprot:F4I906
Length = 369
Score = 237 (88.5 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 52/173 (30%), Positives = 89/173 (51%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
KLF+ G+ W+TT E + F +GE+ ++V++ D+ TG +G+GF+TF A L+E
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
D +V + G+ T+ RKIFVG +P + D+L +F YG+I
Sbjct: 127 DHVIDDRKVDLKRTLPRGDK--DTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDII 184
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVD-PIKTVDGKQLNCRLADNKK 243
E + +D TG+ +GF ++T + D + + KQ+ + A+ K+
Sbjct: 185 EHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPKR 237
>UNIPROTKB|E2RF95 [details] [associations]
symbol:E2RF95 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03008728
Ensembl:ENSCAFT00000001067 OMA:CTTATVE Uniprot:E2RF95
Length = 308
Score = 218 (81.8 bits), Expect = 2.2e-18, Sum P(2) = 2.2e-18
Identities = 70/216 (32%), Positives = 101/216 (46%)
Query: 61 RSIADADPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFIT- 118
+S + DP Q RKLFI GL + T E LRS +G L + VV D T S+G+GFIT
Sbjct: 3 KSESSKDPEQLRKLFIGGLSLEITNESLRSHSEQWGMLTDRVVRRDPNTKGSRGFGFITC 62
Query: 119 ----FKHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPND 174
+ +D AM A P K +DGRV AV+ +S ++++K FVG + D
Sbjct: 63 TTATVEEVDAAMNA--RPHK-VDGRVVEPKRAVSRE--DSQRPGAHLTVKKTFVGGIKED 117
Query: 175 MSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQL 234
L +F YG+IE + D +GK + FA + + ++ TV+G
Sbjct: 118 TEEHHLRDYFEQYGKIEVIEIMIDPGSGK-RSFAFVTFDDHDSVDKIVIQKYHTVNGHNC 176
Query: 235 NCRLADNKKAKPMGP----DGGGPGNVSMNHGDGMG 266
+ A +K+ + D G GN HG G G
Sbjct: 177 EVKKALSKQEQTSVSSSQRDRSGSGN--FGHGGGFG 210
Score = 42 (19.8 bits), Expect = 2.2e-18, Sum P(2) = 2.2e-18
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 375 GMPSGGYPEAGHYGLSSTSAGY 396
G SG Y G YG SS S+ Y
Sbjct: 282 GRSSGPYG-GGDYGGSSNSSSY 302
>UNIPROTKB|F1LUM4 [details] [associations]
symbol:F1LUM4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00389838
ProteinModelPortal:F1LUM4 Ensembl:ENSRNOT00000031839 Uniprot:F1LUM4
Length = 209
Score = 223 (83.6 bits), Expect = 2.4e-18, P = 2.4e-18
Identities = 62/201 (30%), Positives = 97/201 (48%)
Query: 73 LFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF---KHIDGAMLAL 129
L I GL ++TT + LR +G L + VV+ D T S+G+GF+T+ + +D AM A
Sbjct: 1 LLIGGLSFETTDDSLREHSEKWGTLTDCVVMTDPQTEHSRGFGFVTYSCVEEVDAAMCAW 60
Query: 130 KEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGE 189
K+DGRV AV+ +S ++++KIFVG + D L +F YG+
Sbjct: 61 PH---KVDGRVVEPKRAVSRE--DSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGK 115
Query: 190 IEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKA-KPMG 248
IE + D+Q+GK +GFA + + + ++ + A +K+ + G
Sbjct: 116 IETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVFQEHHAINRHNCEVKKAVSKQEMQSAG 175
Query: 249 PD---GGGPGNVSMNHGDGMG 266
P GGG GN M G G
Sbjct: 176 PQRGHGGGSGNF-MGRGGNFG 195
Score = 114 (45.2 bits), Expect = 0.00019, P = 0.00019
Identities = 27/75 (36%), Positives = 40/75 (53%)
Query: 49 AVARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKAT 108
AV+R D V A T +K+F+ G+ DT LR F YG++E V+ D+ +
Sbjct: 74 AVSREDSVKPG------AHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQS 127
Query: 109 GKSKGYGFITFKHID 123
GK +G+ F+TF D
Sbjct: 128 GKKRGFAFVTFDDHD 142
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 222 (83.2 bits), Expect = 3.2e-18, P = 3.2e-18
Identities = 59/200 (29%), Positives = 94/200 (47%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+FI GL WDT+ + L S +GE+ + + D TG+S+G+GF+ FK + L+
Sbjct: 31 KMFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSRGFGFVLFKDAESVDRVLEL 90
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
K+DG++ A A G P +K+FVG + D++ ++L +F YGEIE
Sbjct: 91 TEHKLDGKLIDPKRAKA-IKGKEP--P-----KKVFVGGLSPDITEEQLREYFGVYGEIE 142
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKA--KPMGP 249
L D +T + +GF + E Q L + + + ++A K+ +
Sbjct: 143 SIELPTDTKTNERRGFCFVTFALEEPVQKLLENRYHQIGSGKCEIKVAQPKEVYRQQQNR 202
Query: 250 D---GGGPGNVSMNHGDGMG 266
D GGG G G G G
Sbjct: 203 DRGFGGGRGGFRGRGGRGQG 222
>UNIPROTKB|E2R5N6 [details] [associations]
symbol:E2R5N6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03012109
Ensembl:ENSCAFT00000010232 OMA:EMASASC Uniprot:E2R5N6
Length = 322
Score = 230 (86.0 bits), Expect = 3.5e-18, P = 3.5e-18
Identities = 65/212 (30%), Positives = 101/212 (47%)
Query: 61 RSIADADPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF 119
+S + P Q +KLFI G ++TT E LRS F G L + VV+ D T +S+G+GF+T+
Sbjct: 3 KSESPKGPEQLQKLFIGGWSFETTDESLRSHFKQRGILTDCVVMRDPNTKRSRGFGFVTY 62
Query: 120 KHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNP-VDVSLRKIFVGNVPNDMSAD 178
++ A+ K+DGRV +S + P ++++KIF G + D
Sbjct: 63 TAVEEVDPAMHARPHKVDGRVVEPKRT---SSKEDSQRPGAHLTVKKIFAGGIKEDTEEH 119
Query: 179 KLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRL 238
L +F YG+IE + D+ +GK +GFA + + ++ TV+G R
Sbjct: 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNWEVRK 179
Query: 239 ADNKK--AKPMGPDGG--GPGNVSMNHGDGMG 266
A +K+ A G G GN G G G
Sbjct: 180 ALSKQEMASASCSQRGQSGSGNFGGFRGCGFG 211
>UNIPROTKB|F1LYB2 [details] [associations]
symbol:F1LYB2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00563016
Ensembl:ENSRNOT00000051535 Uniprot:F1LYB2
Length = 261
Score = 198 (74.8 bits), Expect = 4.5e-18, Sum P(2) = 4.5e-18
Identities = 64/198 (32%), Positives = 97/198 (48%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF---KHIDGAMLA 128
KLFI L ++TT + LR S L + VV+ D +S G+GF+T+ + +D AM A
Sbjct: 25 KLFIGYLSFETTDDSLRE-HSEKWTLTDCVVMRDPLFERSSGFGFVTYSCVEEVDAAMCA 83
Query: 129 LKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYG 188
P K +DGRV V AV+ +S ++++KIFVG V D L +F YG
Sbjct: 84 --RPHK-VDGRV-VGPRAVSRE--DSVKPGTHLTVKKIFVGGVREDREEYNLKDYFEKYG 137
Query: 189 EIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKA-KPM 247
+I + D+Q+GK +GFA + + V T++G + +K+ +
Sbjct: 138 KIGTIDVMEDRQSGKKRGFAFVTFDDLDTVDKIAVQKYHTINGHNCEMKKVLSKQGMQSA 197
Query: 248 GPD---GGGPGNVSMNHG 262
G GGG GN+ M G
Sbjct: 198 GSQRGRGGGSGNL-MGRG 214
Score = 42 (19.8 bits), Expect = 4.5e-18, Sum P(2) = 4.5e-18
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 379 GGYPEAGHYGLSSTSAGYPSQHHQAAGTSPVPRVPPGGMY 418
GG +GH G S GY S+ G+ + V GG Y
Sbjct: 219 GGGGNSGHGGNFSGRGGYSSRG--GYGSGGLGYVNQGGGY 256
>TAIR|locus:2006998 [details] [associations]
symbol:AT1G33470 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AK176398 IPI:IPI00533784
RefSeq:NP_174613.2 UniGene:At.17522 UniGene:At.67846
ProteinModelPortal:Q67YS0 SMR:Q67YS0 PaxDb:Q67YS0 PRIDE:Q67YS0
EnsemblPlants:AT1G33470.1 GeneID:840240 KEGG:ath:AT1G33470
TAIR:At1g33470 InParanoid:Q67YS0 OMA:GAQYPFY PhylomeDB:Q67YS0
ProtClustDB:CLSN2680737 ArrayExpress:Q67YS0 Genevestigator:Q67YS0
Uniprot:Q67YS0
Length = 245
Score = 200 (75.5 bits), Expect = 5.3e-18, Sum P(2) = 5.3e-18
Identities = 40/93 (43%), Positives = 58/93 (62%)
Query: 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAM 126
D T K+F+ GL W+T LR+ F +G++ EAVVI DK++G+SKGYGF+TF + A
Sbjct: 3 DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62
Query: 127 LALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPV 159
A +P+ IDGR NLA G + ++P+
Sbjct: 63 KACVDPAPVIDGRRANCNLAAFGVQRSKPSSPI 95
Score = 150 (57.9 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 34/102 (33%), Positives = 52/102 (50%)
Query: 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQ 219
D + K+FVG + + L +F +G+I E + DK +G+ KG+ + E AQ
Sbjct: 3 DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62
Query: 220 AALVDPIKTVDGKQLNCRLA--DNKKAKPMGPDGGGPGNVSM 259
A VDP +DG++ NC LA +++KP P G G M
Sbjct: 63 KACVDPAPVIDGRRANCNLAAFGVQRSKPSSPIHGHVGGRGM 104
Score = 39 (18.8 bits), Expect = 5.3e-18, Sum P(2) = 5.3e-18
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 381 YPE-AGHYGLSSTSAGYPSQHHQAAGTSPVPRVP 413
YP HY S+ YP + +P P +P
Sbjct: 205 YPNHMFHY--SAPGGNYPHHNGSPVSLAPSPVIP 236
>UNIPROTKB|A5GFN8 [details] [associations]
symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
by p53 class mediator resulting in transcription of p21 class
mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
transduction by p53 class mediator resulting in cell cycle arrest"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
HOGENOM:HOG000276232 GO:GO:0070935 GO:GO:0010830 EMBL:CR956362
HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS
CTD:55544 OMA:VGYGYPA UniGene:Ssc.29738 RefSeq:NP_001098782.1
SMR:A5GFN8 STRING:A5GFN8 Ensembl:ENSSSCT00000008216
GeneID:100125973 KEGG:ssc:100125973 Uniprot:A5GFN8
Length = 239
Score = 197 (74.4 bits), Expect = 7.5e-18, Sum P(2) = 7.5e-18
Identities = 41/100 (41%), Positives = 57/100 (57%)
Query: 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAM 126
D T K+F+ GL + TT LR F +G++EEAVVI D+ TGKS+GYGF+T A
Sbjct: 30 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89
Query: 127 LALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKI 166
A K+P+ IDGR NLA G S + ++++
Sbjct: 90 RACKDPNPNIDGRKANVNLAYLGAKPRSLQTGFAIGVQQL 129
Score = 135 (52.6 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 34/102 (33%), Positives = 48/102 (47%)
Query: 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQ 219
D + KIFVG +P + L +F +G+IEE + D+QTGK +G+ A+
Sbjct: 30 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89
Query: 220 AALVDPIKTVDGKQLNCRLADNKKAKPMGPDGGGPGNVSMNH 261
A DP +DG++ N LA AKP G V H
Sbjct: 90 RACKDPNPNIDGRKANVNLA-YLGAKPRSLQTGFAIGVQQLH 130
Score = 41 (19.5 bits), Expect = 7.5e-18, Sum P(2) = 7.5e-18
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 370 PPSSAGMPSGGYPEAGHYGLSSTS-AGYPSQHHQAAGTSP 408
P ++A S GYP A LS+ + AG +Q P
Sbjct: 196 PATAASFVSYGYPAAVPQALSAAAPAGTAFVQYQPPQLQP 235
Score = 40 (19.1 bits), Expect = 9.5e-18, Sum P(2) = 9.5e-18
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 371 PSSAGMPSGGYPEAGHYGLSSTSAGYPSQHHQAAGTSPVPRVPPGG 416
P+ A P Y + + +T+A + S + AA + P G
Sbjct: 177 PAYAQYPPATYDQYPYAASPATAASFVSYGYPAAVPQALSAAAPAG 222
>UNIPROTKB|Q96DH6 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0048864 "stem cell
development" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K14411 OrthoDB:EOG48GW3J EMBL:BC001526
EMBL:BC017560 EMBL:AK093888 IPI:IPI00073713 IPI:IPI00167806
IPI:IPI00455161 RefSeq:NP_620412.1 RefSeq:NP_733839.1
UniGene:Hs.658922 ProteinModelPortal:Q96DH6 SMR:Q96DH6
IntAct:Q96DH6 STRING:Q96DH6 PhosphoSite:Q96DH6 DMDM:51316513
PaxDb:Q96DH6 PRIDE:Q96DH6 DNASU:124540 Ensembl:ENST00000284073
Ensembl:ENST00000322684 Ensembl:ENST00000579180 GeneID:124540
KEGG:hsa:124540 UCSC:uc002iuz.1 UCSC:uc002iva.3 CTD:124540
GeneCards:GC17P055334 HGNC:HGNC:18585 HPA:CAB022300 MIM:607897
neXtProt:NX_Q96DH6 PharmGKB:PA38590 InParanoid:Q96DH6 OMA:ISDCTIM
PhylomeDB:Q96DH6 ChiTaRS:MSI2 GenomeRNAi:124540 NextBio:81316
ArrayExpress:Q96DH6 Bgee:Q96DH6 CleanEx:HS_MSI2
Genevestigator:Q96DH6 GermOnline:ENSG00000153944 Uniprot:Q96DH6
Length = 328
Score = 229 (85.7 bits), Expect = 7.7e-18, P = 7.7e-18
Identities = 59/211 (27%), Positives = 102/211 (48%)
Query: 62 SIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKH 121
S D+ K+FI GL W T+ + LR FS +GE+ E +V+ D T +S+G+GF+TF
Sbjct: 12 SANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFAD 71
Query: 122 IDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVS-LRKIFVGNVPNDMSADKL 180
L +P ++D + +A + P V+ +KIFVG + + + +
Sbjct: 72 PASVDKVLGQPHHELDSKTIDPKVAFPRRA-----QPKMVTRTKKIFVGGLSANTVVEDV 126
Query: 181 LAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLAD 240
+F +G++E+ L FDK T + +GF ++ + + ++ K + C+ A
Sbjct: 127 KQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ 186
Query: 241 NKKAK-PMGPDGGGPG-NVSMNHGD-GMGMV 268
K+ P G G G +M+ GMGM+
Sbjct: 187 PKEVMFPPGTRGRARGLPYTMDAFMLGMGML 217
>UNIPROTKB|E2RK48 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 EMBL:AAEX03014735
RefSeq:XP_854252.2 Ensembl:ENSCAFT00000016345 GeneID:611488
KEGG:cfa:611488 Uniprot:E2RK48
Length = 362
Score = 232 (86.7 bits), Expect = 9.2e-18, P = 9.2e-18
Identities = 56/193 (29%), Positives = 101/193 (52%)
Query: 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAM 126
DP K+FI GL W TT EGLR F +GE++E +V+ D T +S+G+GF+TF G
Sbjct: 18 DPC--KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVD 75
Query: 127 LALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVS-LRKIFVGNVPNDMSADKLLAHFA 185
L + ++D + +A + P V+ +KIFVG + + + + + +F
Sbjct: 76 KVLAQSRHELDSKTIDPKVAFPRRA-----QPKMVTRTKKIFVGGLSVNTTVEDVKQYFE 130
Query: 186 CYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAK 245
+ ++++ L FDK T + +GF +++ + +V+ + + ++N ++ + KKA+
Sbjct: 131 QFEKVDDAMLMFDKTTNRHRGFGFVTFESED-----IVEKVCEIHFHEINNKMVECKKAQ 185
Query: 246 P---MGPDGGGPG 255
P M P G G
Sbjct: 186 PKEVMSPTGSARG 198
>UNIPROTKB|F1LYN9 [details] [associations]
symbol:F1LYN9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00368496
Ensembl:ENSRNOT00000035403 Uniprot:F1LYN9
Length = 263
Score = 218 (81.8 bits), Expect = 9.3e-18, P = 9.3e-18
Identities = 60/199 (30%), Positives = 96/199 (48%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
KLFI GL ++TT + LRS F + L + V++ D + +S+G+G I + ++ A+
Sbjct: 1 KLFIGGLSFETTDKSLRSHFEQWETLTDCVLMRDPNSKRSRGFGLIAYATVEEVDAAMNA 60
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNP-VDVSLRKIFVGNVPNDMSADKLLAHFACYGEI 190
K+DGRV +AV S ++ P ++++KIFVG D L +F YG+I
Sbjct: 61 RPHKVDGRVVEPKVAV---SREDSHRPGAHLTVKKIFVGGSKEDTEEHHLRVYFEQYGKI 117
Query: 191 EEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCR--LADNKKAKPMG 248
E + D +GK +GFA + + ++ TV+G R L + A
Sbjct: 118 EVIEIMTDIGSGKKRGFAFVTFDDQDSVDNIVIQKYHTVNGHNCEVRKALLKQEMASASS 177
Query: 249 PDGGGPGNVSMNHGDGMGM 267
G +VS HG G G+
Sbjct: 178 SQRGRRRDVS-GHG-GFGV 194
>UNIPROTKB|F1RUJ2 [details] [associations]
symbol:RBM24 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0010830 "regulation of myotube differentiation" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 GeneTree:ENSGT00390000002308 OMA:LQADRMQ
EMBL:CU466948 Ensembl:ENSSSCT00000001161 Uniprot:F1RUJ2
Length = 254
Score = 197 (74.4 bits), Expect = 9.5e-18, Sum P(2) = 9.5e-18
Identities = 41/83 (49%), Positives = 51/83 (61%)
Query: 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAM 126
D T K+F+ GL + TT LR F +GE+EEAVVI D+ TGKS+GYGF+T A
Sbjct: 25 DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 84
Query: 127 LALKEPSKKIDGRVTVTNLAVAG 149
A K+P+ IDGR NLA G
Sbjct: 85 RACKDPNPIIDGRKANVNLAYLG 107
Score = 138 (53.6 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 35/99 (35%), Positives = 50/99 (50%)
Query: 148 AGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGF 207
AG ++T D + KIFVG +P + L +F +GEIEE + D+QTGK +G+
Sbjct: 15 AGAKMHTTQK--DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGY 72
Query: 208 ALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKP 246
A+ A DP +DG++ N LA AKP
Sbjct: 73 GFVTMADRAAAERACKDPNPIIDGRKANVNLA-YLGAKP 110
Score = 40 (19.1 bits), Expect = 9.5e-18, Sum P(2) = 9.5e-18
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 364 SSLYRLPPSSAGMPSGGYPEAGHYG 388
++ Y P +A + GY AG YG
Sbjct: 188 AAAYDQYPYAASPAAAGYVTAGGYG 212
>UNIPROTKB|A6QPJ1 [details] [associations]
symbol:RBM24 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0010830 "regulation of myotube differentiation" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
HOGENOM:HOG000276232 GO:GO:0010830 HOVERGEN:HBG108399 CTD:221662
GeneTree:ENSGT00390000002308 OMA:LQADRMQ eggNOG:NOG248750
EMBL:DAAA02055633 EMBL:BC149345 IPI:IPI00711385
RefSeq:NP_001098455.1 UniGene:Bt.111570 SMR:A6QPJ1
Ensembl:ENSBTAT00000038477 GeneID:524220 KEGG:bta:524220
NextBio:20873922 Uniprot:A6QPJ1
Length = 236
Score = 197 (74.4 bits), Expect = 9.5e-18, Sum P(2) = 9.5e-18
Identities = 41/83 (49%), Positives = 51/83 (61%)
Query: 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAM 126
D T K+F+ GL + TT LR F +GE+EEAVVI D+ TGKS+GYGF+T A
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 127 LALKEPSKKIDGRVTVTNLAVAG 149
A K+P+ IDGR NLA G
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLG 89
Score = 137 (53.3 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 32/87 (36%), Positives = 45/87 (51%)
Query: 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQ 219
D + KIFVG +P + L +F +GEIEE + D+QTGK +G+ A+
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 220 AALVDPIKTVDGKQLNCRLADNKKAKP 246
A DP +DG++ N LA AKP
Sbjct: 67 RACKDPNPIIDGRKANVNLA-YLGAKP 92
Score = 40 (19.1 bits), Expect = 9.5e-18, Sum P(2) = 9.5e-18
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 364 SSLYRLPPSSAGMPSGGYPEAGHYG 388
++ Y P +A + GY AG YG
Sbjct: 170 AAAYDQYPYAASPAAAGYVTAGGYG 194
>UNIPROTKB|Q9BX46 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
CTD:221662 EMBL:AK055391 EMBL:AK095016 EMBL:AY547318 EMBL:AL136305
EMBL:BC104810 EMBL:BC104808 IPI:IPI00411370 IPI:IPI00827745
RefSeq:NP_001137413.1 RefSeq:NP_001137414.1 RefSeq:NP_694565.1
UniGene:Hs.741190 ProteinModelPortal:Q9BX46 SMR:Q9BX46
IntAct:Q9BX46 MINT:MINT-2879164 STRING:Q9BX46 PhosphoSite:Q9BX46
DMDM:74761312 PRIDE:Q9BX46 Ensembl:ENST00000318204
Ensembl:ENST00000379052 GeneID:221662 KEGG:hsa:221662
UCSC:uc003nbz.4 UCSC:uc003nca.3 GeneCards:GC06P017281
HGNC:HGNC:21539 neXtProt:NX_Q9BX46 PharmGKB:PA134964569
InParanoid:Q9BX46 OMA:LQADRMQ OrthoDB:EOG4DV5NS PhylomeDB:Q9BX46
GenomeRNAi:221662 NextBio:91409 ArrayExpress:Q9BX46 Bgee:Q9BX46
CleanEx:HS_RBM24 Genevestigator:Q9BX46 Uniprot:Q9BX46
Length = 236
Score = 197 (74.4 bits), Expect = 9.5e-18, Sum P(2) = 9.5e-18
Identities = 41/83 (49%), Positives = 51/83 (61%)
Query: 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAM 126
D T K+F+ GL + TT LR F +GE+EEAVVI D+ TGKS+GYGF+T A
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 127 LALKEPSKKIDGRVTVTNLAVAG 149
A K+P+ IDGR NLA G
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLG 89
Score = 137 (53.3 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 32/87 (36%), Positives = 45/87 (51%)
Query: 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQ 219
D + KIFVG +P + L +F +GEIEE + D+QTGK +G+ A+
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 220 AALVDPIKTVDGKQLNCRLADNKKAKP 246
A DP +DG++ N LA AKP
Sbjct: 67 RACKDPNPIIDGRKANVNLA-YLGAKP 92
Score = 40 (19.1 bits), Expect = 9.5e-18, Sum P(2) = 9.5e-18
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 364 SSLYRLPPSSAGMPSGGYPEAGHYG 388
++ Y P +A + GY AG YG
Sbjct: 170 AAAYDQYPYAASPAAAGYVTAGGYG 194
>UNIPROTKB|E1BLB7 [details] [associations]
symbol:RBM38 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
by p53 class mediator resulting in transcription of p21 class
mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
transduction by p53 class mediator resulting in cell cycle arrest"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
GO:GO:0070935 GO:GO:0010830 GeneTree:ENSGT00390000002308 CTD:55544
OMA:VGYGYPA EMBL:DAAA02036351 IPI:IPI00696591 RefSeq:NP_001192952.1
UniGene:Bt.106613 ProteinModelPortal:E1BLB7
Ensembl:ENSBTAT00000010660 GeneID:533516 KEGG:bta:533516
NextBio:20876057 Uniprot:E1BLB7
Length = 239
Score = 198 (74.8 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 41/100 (41%), Positives = 57/100 (57%)
Query: 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAM 126
D T K+F+ GL + TT LR F +G++EEAVVI D+ TGKS+GYGF+T A
Sbjct: 30 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89
Query: 127 LALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKI 166
A K+P+ IDGR NLA G S + ++++
Sbjct: 90 RACKDPNPNIDGRKANVNLAYLGAKPRSLQTGFAIGVQQV 129
Score = 134 (52.2 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 31/87 (35%), Positives = 45/87 (51%)
Query: 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQ 219
D + KIFVG +P + L +F +G+IEE + D+QTGK +G+ A+
Sbjct: 30 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89
Query: 220 AALVDPIKTVDGKQLNCRLADNKKAKP 246
A DP +DG++ N LA AKP
Sbjct: 90 RACKDPNPNIDGRKANVNLA-YLGAKP 115
Score = 37 (18.1 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 10/46 (21%), Positives = 18/46 (39%)
Query: 371 PSSAGMPSGGYPEAGHYGLSSTSAGYPSQHHQAAGTSPVPRVPPGG 416
P+ A P Y + + +T+A + + AA + P G
Sbjct: 177 PAYAQYPPATYDQYPYAASPATAASFVGYSYPAAVPQALSAAAPAG 222
>MGI|MGI:1923876 [details] [associations]
symbol:Msi2 "musashi RNA-binding protein 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844
"polysome" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0048864 "stem cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1923876 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005844 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 GO:GO:0048864 CTD:124540 ChiTaRS:MSI2
EMBL:AB056102 EMBL:AB056103 EMBL:BK001483 EMBL:AK049637
EMBL:AK049688 EMBL:AK051269 IPI:IPI00120924 IPI:IPI00462899
IPI:IPI00462900 RefSeq:NP_473384.1 UniGene:Mm.400451
UniGene:Mm.428433 UniGene:Mm.474737 ProteinModelPortal:Q920Q6
SMR:Q920Q6 STRING:Q920Q6 PhosphoSite:Q920Q6 PaxDb:Q920Q6
PRIDE:Q920Q6 Ensembl:ENSMUST00000092794 Ensembl:ENSMUST00000107909
GeneID:76626 KEGG:mmu:76626 UCSC:uc007kvn.2 InParanoid:Q920Q6
OMA:ENYISAA NextBio:345476 Bgee:Q920Q6 CleanEx:MM_MSI2
Genevestigator:Q920Q6 GermOnline:ENSMUSG00000069769 Uniprot:Q920Q6
Length = 346
Score = 229 (85.7 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 59/211 (27%), Positives = 102/211 (48%)
Query: 62 SIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKH 121
S D+ K+FI GL W T+ + LR FS +GE+ E +V+ D T +S+G+GF+TF
Sbjct: 12 SANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFAD 71
Query: 122 IDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVS-LRKIFVGNVPNDMSADKL 180
L +P ++D + +A + P V+ +KIFVG + + + +
Sbjct: 72 PASVDKVLGQPHHELDSKTIDPKVAFPRRA-----QPKMVTRTKKIFVGGLSANTVVEDV 126
Query: 181 LAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLAD 240
+F +G++E+ L FDK T + +GF ++ + + ++ K + C+ A
Sbjct: 127 KQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ 186
Query: 241 NKKAK-PMGPDGGGPG-NVSMNHGD-GMGMV 268
K+ P G G G +M+ GMGM+
Sbjct: 187 PKEVMFPPGTRGRARGLPYTMDAFMLGMGML 217
>UNIPROTKB|D6RAF8 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
IPI:IPI00965952 ProteinModelPortal:D6RAF8 SMR:D6RAF8
Ensembl:ENST00000507010 ArrayExpress:D6RAF8 Bgee:D6RAF8
Uniprot:D6RAF8
Length = 221
Score = 216 (81.1 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 49/140 (35%), Positives = 75/140 (53%)
Query: 64 ADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHID 123
A A + K+FI GL WDTT + L+ FS +GE+ + + LD TG+S+G+GF+ FK +
Sbjct: 90 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 149
Query: 124 GAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAH 183
+ + K++G+V A A T PV +KIFVG + D +K+ +
Sbjct: 150 SVDKVMDQKEHKLNGKVIDPKRAKA----MKTKEPV----KKIFVGGLSPDTPEEKIREY 201
Query: 184 FACYGEIEEGPLGFDKQTGK 203
F +GE+E L D +T K
Sbjct: 202 FGGFGEVESIELPMDNKTNK 221
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 223 (83.6 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 61/195 (31%), Positives = 100/195 (51%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAML-ALK 130
K+FI GL DTT F YGE+ ++V++ D+ TG+ +G+GFITF D +++ +
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFA--DPSVVDKVI 77
Query: 131 EPSKKIDGR-VTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGE 189
E + I+G+ V + G GN + D+ +KIFVG +P+ ++ D+L FA YG
Sbjct: 78 EDTHVINGKQVEIKRTIPKGAGGNQSK---DIKTKKIFVGGIPSTVTEDELKDFFAKYGN 134
Query: 190 IEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALV--DPIKTVDGKQLNCRLADNKKAKPM 247
+ E + D +T + +GF ++ + E L + I D Q+ + A+ KK+
Sbjct: 135 VVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMAD-TQVEIKKAEPKKSLNR 193
Query: 248 GPD--GGGPGNVSMN 260
P G P S N
Sbjct: 194 SPPSYGSHPRGRSSN 208
Score = 40 (19.1 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 19/60 (31%), Positives = 22/60 (36%)
Query: 365 SLYRLPPSSAGMPSG-----GYPE-AGHYGLSSTSAGYPSQHHQAAGTSPVPRVPPGGMY 418
SL R PPS P G Y G YG G+P ++ G P R G Y
Sbjct: 190 SLNRSPPSYGSHPRGRSSNDSYASYGGPYGGFDGGYGHPPGPIRSHG-GPASRYAGGYGY 248
>UNIPROTKB|Q5ZMA3 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ719481
IPI:IPI00971402 RefSeq:NP_001012881.1 UniGene:Gga.39322
ProteinModelPortal:Q5ZMA3 SMR:Q5ZMA3 STRING:Q5ZMA3 GeneID:420846
KEGG:gga:420846 CTD:221662 NextBio:20823702 Uniprot:Q5ZMA3
Length = 225
Score = 195 (73.7 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
Identities = 40/83 (48%), Positives = 51/83 (61%)
Query: 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAM 126
D T K+F+ GL + TT LR F +G++EEAVVI D+ TGKS+GYGF+T A
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 127 LALKEPSKKIDGRVTVTNLAVAG 149
A K+P+ IDGR NLA G
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLG 89
Score = 136 (52.9 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 31/87 (35%), Positives = 45/87 (51%)
Query: 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQ 219
D + KIFVG +P + L +F +G+IEE + D+QTGK +G+ A+
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 220 AALVDPIKTVDGKQLNCRLADNKKAKP 246
A DP +DG++ N LA AKP
Sbjct: 67 RACKDPNPIIDGRKANVNLA-YLGAKP 92
Score = 39 (18.8 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 377 PSGGYPEAGHYGLSSTSAGYPSQHHQAAGTSPVPRVPPGG 416
P GY A + S+ +A Y + A+ + V GG
Sbjct: 148 PYIGYTGAAYAQYSAAAAAYEQYPYAASPAAAAGYVAAGG 187
>UNIPROTKB|F1NCV5 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104347 OMA:QHPPADN
EMBL:AADN02009038 EMBL:AADN02009039 IPI:IPI00822447
Ensembl:ENSGALT00000038016 Uniprot:F1NCV5
Length = 338
Score = 226 (84.6 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 57/197 (28%), Positives = 90/197 (45%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+FI GL WDT+ + L S +GE+ + + D TG+S+G+GF+ FK L+
Sbjct: 67 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 126
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
K+DG++ A A G P +K+FVG + D S +++ +F +GEIE
Sbjct: 127 KEHKLDGKLIDPKRAKA-LKGKEP--P-----KKVFVGGLSPDTSEEQIKEYFGAFGEIE 178
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKA--KPMGP 249
L D +T + +GF Y E + L + + ++A K+ +
Sbjct: 179 NIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQ 238
Query: 250 DGGGPGNVSMNHGDGMG 266
GG N S G G G
Sbjct: 239 QKGGKSNASGGRGGGRG 255
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 222 (83.2 bits), Expect = 4.1e-17, Sum P(2) = 4.1e-17
Identities = 62/237 (26%), Positives = 108/237 (45%)
Query: 35 ERLTSDQLLDVLSSAVARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAY 94
E + D++ D S DD S D + K+F+ GL +TT+ F Y
Sbjct: 7 ETVIEDEIHDPKPSEDIEDDDDKSQPHSGGGVD-SAGKIFVGGLARETTSAEFLKHFGKY 65
Query: 95 GELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNS 154
GE+ ++V++ D+ TG+ +G+GF+T+ +++ I +V + G+ S
Sbjct: 66 GEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQDNHIIIGKQVEIKRTIPRGSM--S 123
Query: 155 TNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKT 214
+N D +KIFVG +P+ + D+ F +GE++E + D TG+ +GF Y++
Sbjct: 124 SN---DFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYES 180
Query: 215 AEGAQAALVDPIKT-VDGKQLNCRLADNKKAK----PMGPDGGGPGNVSMNHGDGMG 266
+ L + + G Q+ + A+ KK P G N +GDG G
Sbjct: 181 EDMVDHLLAKGNRIELSGTQVEIKKAEPKKPNSVTTPSKRFGDSRSNFGGGYGDGYG 237
Score = 44 (20.5 bits), Expect = 4.1e-17, Sum P(2) = 4.1e-17
Identities = 10/22 (45%), Positives = 10/22 (45%)
Query: 375 GMPSGGYPEAGHYGLSSTSAGY 396
G P G Y G YG S GY
Sbjct: 245 GGPGGPYKSGGGYG-GGRSGGY 265
Score = 43 (20.2 bits), Expect = 5.2e-17, Sum P(2) = 5.2e-17
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 248 GPDGGGPGNVSMNHGDGMG 266
G GGG G S ++G G G
Sbjct: 332 GEPGGGYGGPSGSYGGGYG 350
>FB|FBgn0263396 [details] [associations]
symbol:sqd "squid" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IC;IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0008069 "dorsal/ventral axis specification, ovarian follicular
epithelium" evidence=IMP] [GO:0007297 "ovarian follicle cell
migration" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP;TAS]
[GO:0008298 "intracellular mRNA localization" evidence=NAS;TAS]
[GO:0017148 "negative regulation of translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0009953
"dorsal/ventral pattern formation" evidence=IMP;TAS] [GO:0006405
"RNA export from nucleus" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0035062 "omega speckle"
evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0019094 "pole plasm mRNA localization"
evidence=IMP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0030720 "oocyte localization
involved in germarium-derived egg chamber formation" evidence=IMP]
[GO:0016325 "oocyte microtubule cytoskeleton organization"
evidence=IMP] [GO:0007293 "germarium-derived egg chamber formation"
evidence=IMP] [GO:0007314 "oocyte anterior/posterior axis
specification" evidence=IMP] [GO:0045451 "pole plasm oskar mRNA
localization" evidence=IEP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000785 GO:GO:0003730 GO:GO:0006406 GO:GO:0033119
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0030720
GO:GO:0007297 eggNOG:COG0724 GO:GO:0045451 GO:GO:0005703
GO:GO:0000381 GO:GO:0016325 GO:GO:0008069
GeneTree:ENSGT00700000104255 GO:GO:0035062 EMBL:X62637 EMBL:X62638
EMBL:S61875 EMBL:S62100 EMBL:AY118501 EMBL:BT001384 EMBL:BT003283
EMBL:BT023832 EMBL:S51693 PIR:A47369 PIR:B41732 PIR:B47369
PIR:C48110 RefSeq:NP_001247088.1 RefSeq:NP_652209.1
RefSeq:NP_731825.1 RefSeq:NP_731826.1 RefSeq:NP_996203.1
UniGene:Dm.7189 ProteinModelPortal:Q08473 SMR:Q08473 IntAct:Q08473
MINT:MINT-847475 STRING:Q08473 PaxDb:Q08473
EnsemblMetazoa:FBtr0082855 GeneID:41666 KEGG:dme:Dmel_CG16901
CTD:41666 FlyBase:FBgn0263396 InParanoid:Q08473 KO:K03102
OMA:GDIDSIN OrthoDB:EOG43BK52 PhylomeDB:Q08473 ChiTaRS:sqd
GenomeRNAi:41666 NextBio:824926 Bgee:Q08473 GermOnline:CG16901
Uniprot:Q08473
Length = 344
Score = 220 (82.5 bits), Expect = 4.2e-17, Sum P(2) = 4.2e-17
Identities = 61/195 (31%), Positives = 95/195 (48%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALK 130
RKLF+ GL W+TT + LR F YGE+E V D TG+S+G+ FI F + +
Sbjct: 56 RKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEA------ 109
Query: 131 EPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEI 190
ID +V+ + + NS KIFVG + ++S +++ +F +G I
Sbjct: 110 -----ID-KVSAADEHII-NSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNI 162
Query: 191 EEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNK-KAKPMGP 249
E + FDKQ + KGF + + + L P + + GK+++ + A K + + MG
Sbjct: 163 VEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPENQMMGG 222
Query: 250 DGGGPGNVSMNHGDG 264
GGP M G G
Sbjct: 223 MRGGPRG-GMRGGRG 236
Score = 38 (18.4 bits), Expect = 4.2e-17, Sum P(2) = 4.2e-17
Identities = 8/17 (47%), Positives = 8/17 (47%)
Query: 248 GPDGGGPGNVSMNHGDG 264
GP GGG N G G
Sbjct: 319 GPKGGGGFNGGKQRGGG 335
>UNIPROTKB|Q9H0Z9 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA;IDA] [GO:0010830 "regulation of myotube
differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005829 "cytosol" evidence=IEA;IDA]
[GO:0043484 "regulation of RNA splicing" evidence=IDA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IDA] [GO:0006977 "DNA damage
response, signal transduction by p53 class mediator resulting in
cell cycle arrest" evidence=IDA] [GO:0006978 "DNA damage response,
signal transduction by p53 class mediator resulting in
transcription of p21 class mediator" evidence=IDA] [GO:0007050
"cell cycle arrest" evidence=IDA] [GO:0008285 "negative regulation
of cell proliferation" evidence=IDA] [GO:0070935 "3'-UTR-mediated
mRNA stabilization" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CH471077 GO:GO:0008285
GO:GO:0030154 GO:GO:0006977 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007050
GO:GO:0007049 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
eggNOG:COG0724 GO:GO:0070935 GO:GO:0010830 EMBL:AL109955
HOVERGEN:HBG108399 EMBL:AF432218 EMBL:X75314 EMBL:X75315
EMBL:BC018711 IPI:IPI00306057 IPI:IPI00374855 RefSeq:NP_059965.2
RefSeq:NP_906270.1 UniGene:Hs.236361 PDB:2CQD PDBsum:2CQD
ProteinModelPortal:Q9H0Z9 SMR:Q9H0Z9 IntAct:Q9H0Z9 STRING:Q9H0Z9
PhosphoSite:Q9H0Z9 DMDM:215273895 PaxDb:Q9H0Z9 DNASU:55544
Ensembl:ENST00000356208 Ensembl:ENST00000440234 GeneID:55544
KEGG:hsa:55544 UCSC:uc010zzj.2 CTD:55544 GeneCards:GC20P055966
H-InvDB:HIX0015939 HGNC:HGNC:15818 HPA:CAB017036 MIM:612428
neXtProt:NX_Q9H0Z9 PharmGKB:PA34449 InParanoid:Q9H0Z9 OMA:VGYGYPA
EvolutionaryTrace:Q9H0Z9 GenomeRNAi:55544 NextBio:59995
ArrayExpress:Q9H0Z9 Bgee:Q9H0Z9 CleanEx:HS_RBM38
Genevestigator:Q9H0Z9 GermOnline:ENSG00000132819 Uniprot:Q9H0Z9
Length = 239
Score = 194 (73.4 bits), Expect = 4.5e-17, Sum P(2) = 4.5e-17
Identities = 41/100 (41%), Positives = 57/100 (57%)
Query: 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAM 126
D T K+F+ GL + TT LR F +G++EEAVVI D+ TGKS+GYGF+T A
Sbjct: 30 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89
Query: 127 LALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKI 166
A K+P+ IDGR NLA G S + ++++
Sbjct: 90 RACKDPNPIIDGRKANVNLAYLGAKPRSLQTGFAIGVQQL 129
Score = 134 (52.2 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 34/102 (33%), Positives = 48/102 (47%)
Query: 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQ 219
D + KIFVG +P + L +F +G+IEE + D+QTGK +G+ A+
Sbjct: 30 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89
Query: 220 AALVDPIKTVDGKQLNCRLADNKKAKPMGPDGGGPGNVSMNH 261
A DP +DG++ N LA AKP G V H
Sbjct: 90 RACKDPNPIIDGRKANVNLA-YLGAKPRSLQTGFAIGVQQLH 130
Score = 37 (18.1 bits), Expect = 4.5e-17, Sum P(2) = 4.5e-17
Identities = 10/46 (21%), Positives = 18/46 (39%)
Query: 371 PSSAGMPSGGYPEAGHYGLSSTSAGYPSQHHQAAGTSPVPRVPPGG 416
P+ A P Y + + +T+A + + AA + P G
Sbjct: 177 PAYAQYPPATYDQYPYAASPATAASFVGYSYPAAVPQALSAAAPAG 222
>UNIPROTKB|F1N4K3 [details] [associations]
symbol:F1N4K3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:DAAA02019527
IPI:IPI00906169 Ensembl:ENSBTAT00000002951 OMA:HAINGHH
Uniprot:F1N4K3
Length = 329
Score = 224 (83.9 bits), Expect = 4.6e-17, P = 4.6e-17
Identities = 52/169 (30%), Positives = 83/169 (49%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALK 130
RKLFI GL + TT E LR + +GEL + VV+ D A+ +S+G GF+TF + A+
Sbjct: 9 RKLFIGGLSFQTTEESLRKYYQQWGELTDCVVLRDFASQRSRGCGFVTFSSVTEVDAAMA 68
Query: 131 EPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEI 190
IDGRV A+ + S +L+K+FVG + D L +F YG+I
Sbjct: 69 ARPHSIDGRVLEPRRAIPREA--SGQRGAHWTLKKLFVGGIKEDTEEHHLREYFEKYGKI 126
Query: 191 EEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA 239
+ + D+Q+G+ +GF + + ++ ++G R A
Sbjct: 127 DAIEIITDRQSGRKRGFGFVTFDDYDPVDKIVLQKYHAINGHHAEVRKA 175
Score = 123 (48.4 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 29/109 (26%), Positives = 53/109 (48%)
Query: 69 TQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLA 128
T +KLF+ G+ DT LR F YG+++ +I D+ +G+ +G+GF+TF D
Sbjct: 98 TLKKLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGRKRGFGFVTFDDYDPVDKI 157
Query: 129 LKEPSKKIDGR-------VTVTNLAVAGNSGNSTNNPVDVSLRKIFVGN 170
+ + I+G +++ + S + +P D S+ + GN
Sbjct: 158 VLQKYHAINGHHAEVRKALSIWEMQQVQGSRSRKRDPFDFSVSSSWGGN 206
>SGD|S000005483 [details] [associations]
symbol:HRP1 "Subunit of cleavage factor I" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP;IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IPI]
[GO:0006379 "mRNA cleavage" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005483
EMBL:BK006948 GO:GO:0000184 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0010494 eggNOG:COG0724
GO:GO:0006379 GO:GO:0005849 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:U35737 EMBL:U38535 EMBL:X95258 EMBL:Z74865 PIR:S66820
RefSeq:NP_014518.1 PDB:2CJK PDB:2KM8 PDBsum:2CJK PDBsum:2KM8
ProteinModelPortal:Q99383 SMR:Q99383 DIP:DIP-1371N IntAct:Q99383
MINT:MINT-395353 STRING:Q99383 PaxDb:Q99383 PeptideAtlas:Q99383
EnsemblFungi:YOL123W GeneID:853997 KEGG:sce:YOL123W CYGD:YOL123w
HOGENOM:HOG000248803 OMA:AREEQDK OrthoDB:EOG4TF3VC
EvolutionaryTrace:Q99383 NextBio:975491 Genevestigator:Q99383
GermOnline:YOL123W Uniprot:Q99383
Length = 534
Score = 230 (86.0 bits), Expect = 4.9e-17, Sum P(2) = 4.9e-17
Identities = 58/205 (28%), Positives = 96/205 (46%)
Query: 61 RSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFK 120
RS AD K+FI GL WDTT + LR F YG + + ++ D ATG+S+G+GF++F+
Sbjct: 149 RSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFE 208
Query: 121 HIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKL 180
+K +DG+V A+ + + T KIFVG + D+ +
Sbjct: 209 KPSSVDEVVKT-QHILDGKVIDPKRAIPRDEQDKTG--------KIFVGGIGPDVRPKEF 259
Query: 181 LAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLAD 240
F+ +G I + L DK TG+ +GF Y +A+ + +++ + A+
Sbjct: 260 EEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAE 319
Query: 241 NKKAKPMGPDGGGP-GNVSMNHGDG 264
+ + + GG G +MN G
Sbjct: 320 PRHMQQKSSNNGGNNGGNNMNRRGG 344
Score = 38 (18.4 bits), Expect = 4.9e-17, Sum P(2) = 4.9e-17
Identities = 12/35 (34%), Positives = 14/35 (40%)
Query: 388 GLSSTSAGYPSQHHQAAGTSPVPRVPPGGMYPNVP 422
G+ T Y Q Q A P +PP M N P
Sbjct: 392 GMDYTQM-YQQQMQQMAMMMPGFAMPPNAMTLNQP 425
>UNIPROTKB|F1M6S2 [details] [associations]
symbol:F1M6S2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00782238
ProteinModelPortal:F1M6S2 Ensembl:ENSRNOT00000030712 Uniprot:F1M6S2
Length = 223
Score = 211 (79.3 bits), Expect = 6.0e-17, P = 6.0e-17
Identities = 68/213 (31%), Positives = 105/213 (49%)
Query: 67 DPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFI-TF---KH 121
+P Q RKLFI L ++TT + LR F +G L+ VV+ D +S+ +GF+ T+ K
Sbjct: 13 EPEQLRKLFIGCLSFETTDDSLREHFEKWGTLD-CVVMRDLQIKRSRSFGFVSTYSCVKE 71
Query: 122 IDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLL 181
+D AM A P K +DG V AV+ +S ++++KIFVG + D L
Sbjct: 72 VDAAMCA--RPHK-VDGHVVEPKRAVSRE--DSVKPGAHLTVKKIFVGGIKEDTEEYNLR 126
Query: 182 AHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADN 241
+F YG+IE + D+Q+GK +GFA + + +V T++G + A +
Sbjct: 127 DYFEKYGKIEIIEVMEDRQSGKKRGFAFVTFDDHDTVDK-IVQKYHTINGHNYEVKKAVS 185
Query: 242 KKAKPM--------GPDGGGPGNVSMNHGDGMG 266
K+ G GGG GN + G+G G
Sbjct: 186 KQEMQSAGSQRGRGGNFGGGGGNFG-HGGNGYG 217
Score = 112 (44.5 bits), Expect = 0.00042, P = 0.00042
Identities = 27/75 (36%), Positives = 40/75 (53%)
Query: 49 AVARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKAT 108
AV+R D V A T +K+F+ G+ DT LR F YG++E V+ D+ +
Sbjct: 93 AVSREDSVKPG------AHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIEIIEVMEDRQS 146
Query: 109 GKSKGYGFITFKHID 123
GK +G+ F+TF D
Sbjct: 147 GKKRGFAFVTFDDHD 161
>UNIPROTKB|B4DHE8 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK295060 IPI:IPI00910884
SMR:B4DHE8 STRING:B4DHE8 Ensembl:ENST00000416426 UCSC:uc010wnm.1
Uniprot:B4DHE8
Length = 324
Score = 222 (83.2 bits), Expect = 7.3e-17, P = 7.3e-17
Identities = 56/200 (28%), Positives = 98/200 (49%)
Query: 73 LFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEP 132
+FI GL W T+ + LR FS +GE+ E +V+ D T +S+G+GF+TF L +P
Sbjct: 1 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQP 60
Query: 133 SKKIDGRVTVTNLAVAGNSGNSTNNPVDVS-LRKIFVGNVPNDMSADKLLAHFACYGEIE 191
++D + +A + P V+ +KIFVG + + + + +F +G++E
Sbjct: 61 HHELDSKTIDPKVAFPRRA-----QPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVE 115
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAK-PMGPD 250
+ L FDK T + +GF ++ + + ++ K + C+ A K+ P G
Sbjct: 116 DAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTR 175
Query: 251 GGGPG-NVSMNHGD-GMGMV 268
G G +M+ GMGM+
Sbjct: 176 GRARGLPYTMDAFMLGMGML 195
Score = 124 (48.7 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 19/53 (35%), Positives = 38/53 (71%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHID 123
+K+F+ GL +T E ++ F +G++E+A+++ DK T + +G+GF+TF++ D
Sbjct: 88 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENED 140
>UNIPROTKB|F1LW71 [details] [associations]
symbol:F1LW71 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00563710 ProteinModelPortal:F1LW71
Ensembl:ENSRNOT00000048553 Uniprot:F1LW71
Length = 260
Score = 209 (78.6 bits), Expect = 1.0e-16, P = 1.0e-16
Identities = 56/192 (29%), Positives = 96/192 (50%)
Query: 53 HDDVLESVRSIADADPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKS 111
H V+ S+ + P Q RKLF GL ++TT E LRS F +G L + VV+ D T +S
Sbjct: 4 HPAVMSKSESLKE--PEQLRKLFTGGLNFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 61
Query: 112 KGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNV 171
+G+GF+T+ ++ + K+ ++ ++ + NL + T ++++KIFVG +
Sbjct: 62 RGFGFVTYAPVEE--VDRKDHTRWME---ELWNLRAVSREDSQTPG-AHLTVKKIFVGGI 115
Query: 172 PNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDG 231
D L + YG+IE + D+ +GK GFA + + ++ TV+G
Sbjct: 116 KEDTEEHHLRDYSEQYGKIEVVEIMTDRGSGKKGGFAFVTFDDHDSVDKIVIQKYHTVNG 175
Query: 232 KQLNCRLADNKK 243
R A +K+
Sbjct: 176 HNCEVRKALSKQ 187
>ZFIN|ZDB-GENE-070212-1 [details] [associations]
symbol:dazap1 "DAZ associated protein 1" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070212-1 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:BX255969 EMBL:BX323045 IPI:IPI00961610
Ensembl:ENSDART00000104362 Bgee:F1QBG2 Uniprot:F1QBG2
Length = 407
Score = 226 (84.6 bits), Expect = 1.0e-16, P = 1.0e-16
Identities = 57/198 (28%), Positives = 95/198 (47%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
KLF+ GL W TT E LR+ FS YGE+ + V++ DK+T +S+G+GF+ FK + L
Sbjct: 12 KLFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKSTNQSRGFGFVKFKDPNCVRTVLDT 71
Query: 132 PSKKIDGR-VTVTNLAVAGNSGNSTN-------NPVDVSL-RKIFVGNVPNDMSADKLLA 182
+DGR + G T + D + +KIFVG +P++ +L
Sbjct: 72 KPHNLDGRNIDPKPCTPRGMQPEKTRTKDGWKGSKSDSNKSKKIFVGGIPHNCGEAELRD 131
Query: 183 HFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNK 242
+F +G + E + +D + +P+GF ++ + A+ + GK++ K
Sbjct: 132 YFNRFGVVTEVVMIYDAEKQRPRGFGFITFEAEQSVDQAVNMHFHDIMGKKVEV-----K 186
Query: 243 KAKPMGPDGGGPGNVSMN 260
KA+P PG + N
Sbjct: 187 KAEPRDSKAPAPGQLGAN 204
>UNIPROTKB|F1NTG9 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AADN02058490 IPI:IPI00577519
Ensembl:ENSGALT00000024525 ArrayExpress:F1NTG9 Uniprot:F1NTG9
Length = 398
Score = 225 (84.3 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 58/197 (29%), Positives = 99/197 (50%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHID--GAMLAL 129
KLF+ GL W TT E LRS FS YGE+ + V++ DK T +S+G+GF+ FK + G +LA
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 130 KEPS---KKIDGRVTV--------TNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSAD 178
+ + + ID + T G+ ++N KIFVG +P++
Sbjct: 61 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGSRSDNNKS---NKIFVGGIPHNCGET 117
Query: 179 KLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRL 238
+L +F +G + E + +D + +P+GF ++ + A+ + GK++ +
Sbjct: 118 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 177
Query: 239 ADNKKAKPMGPDGGGPG 255
A+ + +K P G PG
Sbjct: 178 AEPRDSKSQTP--GPPG 192
>UNIPROTKB|F1M6C7 [details] [associations]
symbol:F1M6C7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00370270
Ensembl:ENSRNOT00000014756 Uniprot:F1M6C7
Length = 273
Score = 208 (78.3 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 61/211 (28%), Positives = 98/211 (46%)
Query: 68 PTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAM 126
P Q RKLFI GL + TT E LRS F + L + V + D T +S+G+GF+T+ ++
Sbjct: 1 PEQLRKLFIGGLSFKTTNESLRSHFEQWRTLTDCVEMRDPNTKRSRGFGFVTYTTVEEVD 60
Query: 127 LALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFAC 186
A+ K+DG AV+ S +++++I VG + D L +F
Sbjct: 61 AAMNARPHKVDGSFVEPKRAVSREDSQSPG--AHLTVKEISVGGIKEDTEEHHLRDYFEH 118
Query: 187 YGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDG---------KQLNCR 237
YG+IE + D+ +GK K FA + + ++ TV+G KQ
Sbjct: 119 YGKIEVIEIMTDRGSGK-KEFAFVTFDDHDSVDKIVIQKYHTVNGHNCETVALSKQEMAS 177
Query: 238 LADNKKAKPMGPD--GGGPGNVSMNHGDGMG 266
+ +++ + + GGGPG + G G G
Sbjct: 178 ASSSQRGRSGSGNFGGGGPGYCEGSRGYGSG 208
>UNIPROTKB|F1SA35 [details] [associations]
symbol:LOC100737421 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:FP326688 RefSeq:XP_003480852.1
Ensembl:ENSSSCT00000014862 GeneID:100737421 KEGG:ssc:100737421
OMA:STFGNIV Uniprot:F1SA35
Length = 349
Score = 215 (80.7 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 52/197 (26%), Positives = 95/197 (48%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
KLFI GL TT + LR+ + +G+L + VV+ D + +S+G+GF+TF + A+
Sbjct: 22 KLFIGGLCSRTTEKSLRNYYQQWGKLTDCVVLRDPSNKRSRGFGFVTFSSVAEVDAAMAA 81
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
+DG+V AVA ++++K+FVG + D L +F YG+I+
Sbjct: 82 RPHSVDGKVVDPKRAVAREESEKPG--AHLAVKKLFVGGIKEDTEEHHLRDYFEKYGKID 139
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGK--QLNCRLADNKKAKPMGP 249
+ D+Q+GK +GF + + ++ T++G ++ L+ + +
Sbjct: 140 TIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHHAEVGKALSRQEMQEVQSS 199
Query: 250 DGGGPGNVSMNHGDGMG 266
G G++ + GD G
Sbjct: 200 TSGRGGHIGL--GDSCG 214
Score = 118 (46.6 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 21/53 (39%), Positives = 33/53 (62%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHID 123
+KLF+ G+ DT LR F YG+++ +I D+ +GK +G+GF+TF D
Sbjct: 112 KKLFVGGIKEDTEEHHLRDYFEKYGKIDTIEIITDRQSGKKRGFGFVTFDDHD 164
Score = 41 (19.5 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 248 GPDGGGPGNVSMNHGDG 264
G GGGPG + G G
Sbjct: 266 GYGGGGPGYGNQKRGSG 282
>TAIR|locus:2037370 [details] [associations]
symbol:AT1G20880 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00530203 RefSeq:NP_001185049.1 RefSeq:NP_564127.1
UniGene:At.26164 ProteinModelPortal:F4HUQ5 SMR:F4HUQ5 PRIDE:F4HUQ5
EnsemblPlants:AT1G20880.1 EnsemblPlants:AT1G20880.2 GeneID:838681
KEGG:ath:AT1G20880 OMA:MAYHSIP Uniprot:F4HUQ5
Length = 274
Score = 207 (77.9 bits), Expect = 1.7e-16, P = 1.7e-16
Identities = 43/85 (50%), Positives = 55/85 (64%)
Query: 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAM 126
D T K+F+ GL W+T +E LR F YG++ EAVVI DK TG+SKGYGF+TF+ + A
Sbjct: 20 DTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAAR 79
Query: 127 LALKEPSKKIDGRVTVTNLAVAGNS 151
A +P+ IDGR NLA G S
Sbjct: 80 RACVDPTPIIDGRRANCNLASLGRS 104
Score = 169 (64.5 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 33/92 (35%), Positives = 53/92 (57%)
Query: 156 NNPV-DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKT 214
N+P D + K+FVG + + ++ L HF YG+I E + DK TG+ KG+ ++
Sbjct: 15 NSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRD 74
Query: 215 AEGAQAALVDPIKTVDGKQLNCRLADNKKAKP 246
E A+ A VDP +DG++ NC LA +++P
Sbjct: 75 PEAARRACVDPTPIIDGRRANCNLASLGRSRP 106
>CGD|CAL0003460 [details] [associations]
symbol:orf19.5989 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0003460 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000003 EMBL:AACQ01000004 eggNOG:COG0724 KO:K14411
RefSeq:XP_723052.1 RefSeq:XP_723199.1 ProteinModelPortal:Q5ANB5
SMR:Q5ANB5 STRING:Q5ANB5 GeneID:3635162 GeneID:3635323
KEGG:cal:CaO19.13410 KEGG:cal:CaO19.5989 Uniprot:Q5ANB5
Length = 475
Score = 221 (82.9 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
Identities = 57/187 (30%), Positives = 88/187 (47%)
Query: 62 SIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKH 121
S A RK FI GL WDTT E L S F YG + + ++ D ATG+S+G+GF+TF+
Sbjct: 153 SAESAGGPSRKCFIGGLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGRSRGFGFLTFED 212
Query: 122 IDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLL 181
LK+ +DG++ A++ KIFVG + ++ ++
Sbjct: 213 AKSVDALLKD-RHVLDGKLIDPKRAISKEDQEKVG--------KIFVGGIDPMVTEEEFD 263
Query: 182 AHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADN 241
F+ +G+I + L DK TG+ +GF Y + V+ T+ GK +
Sbjct: 264 NFFSQFGKIIDCQLMIDKDTGRSRGFGFVTYDSPAAVDKVCVNKYLTLKGKAMEV----- 318
Query: 242 KKAKPMG 248
K+A P G
Sbjct: 319 KRAAPRG 325
Score = 42 (19.8 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 242 KKAKPMGPD--GGGPGNVSMNHGDGMG 266
K+A P GP GGG G + G G
Sbjct: 439 KRAPPTGPSYRGGGRGGGRGGYRRGRG 465
>TAIR|locus:2173967 [details] [associations]
symbol:AT5G55550 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 ProtClustDB:CLSN2689626 EMBL:AY050796
EMBL:AY096460 IPI:IPI00543007 RefSeq:NP_568826.1 RefSeq:NP_974937.1
UniGene:At.6910 ProteinModelPortal:Q949Z3 SMR:Q949Z3 PRIDE:Q949Z3
EnsemblPlants:AT5G55550.2 EnsemblPlants:AT5G55550.3 GeneID:835649
KEGG:ath:AT5G55550 TAIR:At5g55550 InParanoid:Q949Z3 OMA:VSERVIM
PhylomeDB:Q949Z3 Genevestigator:Q949Z3 Uniprot:Q949Z3
Length = 460
Score = 223 (83.6 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 58/205 (28%), Positives = 101/205 (49%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
KLFI G+ WDT E LR FS YG++ EAV++ D+ATG+++G+GFI F + + +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTN---NPVDVS---------LRKIFVGNVPNDMSADK 179
IDGR AV + +P+ + +KIFVG +P+ ++ ++
Sbjct: 67 -KHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 180 LLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA 239
+F +G I + + +D T +P+GF + + + L ++GK + + A
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRA 185
Query: 240 DNKKAKPMGPDGGGPGNVSMNHGDG 264
K+ P+ + P +N+G G
Sbjct: 186 VPKEISPVS-NIRSPLASGVNYGGG 209
Score = 119 (46.9 bits), Expect = 0.00030, P = 0.00030
Identities = 44/172 (25%), Positives = 75/172 (43%)
Query: 29 DARKIVERLTSDQLLDVLSSAVARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLR 88
+A+K V R DQ VL RH + + + +K+F+ GL T E +
Sbjct: 76 EAKKAVPR--DDQ--QVLK----RHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFK 127
Query: 89 SIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLAVA 148
+ F +G + + VV+ D T + +G+GFITF D L + +++G++ AV
Sbjct: 128 NYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVP 187
Query: 149 GNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFA----CYGEIEEGPLG 196
+N ++ + G N M A+ +FA Y + GP+G
Sbjct: 188 KEISPVSNIRSPLA-SGVNYGGGSNRMPANSYFNNFAPGPGFYNSL--GPVG 236
>TAIR|locus:2011726 [details] [associations]
symbol:AT1G76460 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0048573 "photoperiodism,
flowering" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 UniGene:At.43912
UniGene:At.70089 IPI:IPI00542968 RefSeq:NP_565132.2
UniGene:At.69045 ProteinModelPortal:F4I2E4 SMR:F4I2E4 PRIDE:F4I2E4
EnsemblPlants:AT1G76460.1 GeneID:843979 KEGG:ath:AT1G76460
OMA:YGPEYMY Uniprot:F4I2E4
Length = 285
Score = 208 (78.3 bits), Expect = 4.0e-16, P = 4.0e-16
Identities = 43/83 (51%), Positives = 54/83 (65%)
Query: 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAM 126
D T K+F+ GL W+T +E LR F YGE+ EAVVI DK TG+SKGYGF+TF+ + A
Sbjct: 20 DTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAAR 79
Query: 127 LALKEPSKKIDGRVTVTNLAVAG 149
A +P+ IDGR NLA G
Sbjct: 80 RACADPTPIIDGRRANCNLASLG 102
Score = 173 (66.0 bits), Expect = 5.9e-11, P = 5.9e-11
Identities = 36/104 (34%), Positives = 56/104 (53%)
Query: 147 VAGNSGNSTNNPV-DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPK 205
V G+ + N+P D + K+FVG + + ++ L HF YGEI E + DK TG+ K
Sbjct: 6 VPGSGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSK 65
Query: 206 GFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKPMGP 249
G+ ++ E A+ A DP +DG++ NC LA + +P P
Sbjct: 66 GYGFVTFRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPLP 109
>MGI|MGI:1355299 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein
D-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISA] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0010468 "regulation of gene
expression" evidence=ISO] [GO:0016071 "mRNA metabolic process"
evidence=ISA] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1355299 GO:GO:0005634 GO:GO:0005737
GO:GO:0016071 GO:GO:0006355 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 ChiTaRS:HNRPDL
EMBL:AB017020 EMBL:AK011581 EMBL:AK172629 EMBL:BC021374
IPI:IPI00129417 UniGene:Mm.389579 ProteinModelPortal:Q9Z130
SMR:Q9Z130 IntAct:Q9Z130 STRING:Q9Z130 PhosphoSite:Q9Z130
PaxDb:Q9Z130 PRIDE:Q9Z130 InParanoid:Q9Z130 Bgee:Q9Z130
CleanEx:MM_HNRPDL Genevestigator:Q9Z130 Uniprot:Q9Z130
Length = 301
Score = 213 (80.0 bits), Expect = 4.3e-16, P = 4.3e-16
Identities = 55/197 (27%), Positives = 89/197 (45%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+FI GL WDT+ + L S +GE+ + + D TG+S+G+GF+ FK L+
Sbjct: 30 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 89
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
K+DG++ A A G P +K+FVG + D S +++ +F +GEIE
Sbjct: 90 KEHKLDGKLIDPKRAKA-LKGKEP--P-----KKVFVGGLSPDTSEEQIKEYFGAFGEIE 141
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKA--KPMGP 249
L D +T + +GF Y E + L + + ++A K+ +
Sbjct: 142 NIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQ 201
Query: 250 DGGGPGNVSMNHGDGMG 266
GG G + G G
Sbjct: 202 QKGGRGAAAGGRGGARG 218
>RGD|1309950 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein D-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309950 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 216 (81.1 bits), Expect = 4.6e-16, P = 4.6e-16
Identities = 57/202 (28%), Positives = 91/202 (45%)
Query: 68 PTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAM 126
PT K+FI GL WDT+ + L S +GE+ + + D TG+S+G+GF+ FK
Sbjct: 47 PTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 106
Query: 127 LALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFAC 186
L+ K+DG++ A A G P +K+FVG + D S +++ +F
Sbjct: 107 KVLELKEHKLDGKLIDPKRAKA-LKGKEP--P-----KKVFVGGLSPDTSEEQIKEYFGA 158
Query: 187 YGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKA-- 244
+GEIE L D +T + +GF Y E + L + + ++A K+
Sbjct: 159 FGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYR 218
Query: 245 KPMGPDGGGPGNVSMNHGDGMG 266
+ GG G + G G
Sbjct: 219 QQQQQQKGGRGAAAGGRGGARG 240
>UNIPROTKB|Q3SWU3 [details] [associations]
symbol:Hnrpdl "Heterogeneous nuclear ribonucleoprotein
D-like" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1309950
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 216 (81.1 bits), Expect = 4.6e-16, P = 4.6e-16
Identities = 57/202 (28%), Positives = 91/202 (45%)
Query: 68 PTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAM 126
PT K+FI GL WDT+ + L S +GE+ + + D TG+S+G+GF+ FK
Sbjct: 47 PTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD 106
Query: 127 LALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFAC 186
L+ K+DG++ A A G P +K+FVG + D S +++ +F
Sbjct: 107 KVLELKEHKLDGKLIDPKRAKA-LKGKEP--P-----KKVFVGGLSPDTSEEQIKEYFGA 158
Query: 187 YGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKA-- 244
+GEIE L D +T + +GF Y E + L + + ++A K+
Sbjct: 159 FGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYR 218
Query: 245 KPMGPDGGGPGNVSMNHGDGMG 266
+ GG G + G G
Sbjct: 219 QQQQQQKGGRGAAAGGRGGARG 240
>UNIPROTKB|F1MW51 [details] [associations]
symbol:F1MW51 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02008023 IPI:IPI00696055
Ensembl:ENSBTAT00000016590 Uniprot:F1MW51
Length = 274
Score = 202 (76.2 bits), Expect = 6.5e-16, P = 6.5e-16
Identities = 58/201 (28%), Positives = 93/201 (46%)
Query: 67 DPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGA 125
+P Q RKLFI GL ++TT E LRS F G L + VV D +S+G+GF+T+ ++
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSRFEQGGTLTDCVVRRDPNAKRSRGFGFVTYATVEEV 68
Query: 126 MLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFA 185
P +D RV A++ +S + ++K+FVG + D L +F
Sbjct: 69 K---GRPH--VDERVVEPKWAISRE--DSQRPGAHLPVKKVFVGGIKEDTEEHHLRDYFE 121
Query: 186 CYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAK 245
YG IE + D+ +GK +GFA ++ + ++ T +G LNC + +
Sbjct: 122 QYGRIEVIEIMTDQGSGK-RGFAFILFDDHDSIDKIVIQKYHTGNG--LNCEVRKALSKQ 178
Query: 246 PMGPDGGGPGNVSMNHGDGMG 266
M + G G+G
Sbjct: 179 EMASASSSQRDFGGGRGGGLG 199
>UNIPROTKB|D4AB76 [details] [associations]
symbol:D4AB76 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00558881 ProteinModelPortal:D4AB76
Ensembl:ENSRNOT00000043240 Uniprot:D4AB76
Length = 306
Score = 212 (79.7 bits), Expect = 8.3e-16, P = 8.3e-16
Identities = 65/212 (30%), Positives = 100/212 (47%)
Query: 61 RSIADADPTQR-KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF 119
+S + +P Q KLFI GL + TT E LRS F +G L + V+ D S+G+GF+T+
Sbjct: 3 KSESTKEPEQLWKLFIGGLSFKTTDESLRSHFEQWGTLTDCVM-RDPNNKISRGFGFVTY 61
Query: 120 KHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADK 179
++ A+ K+DG V AV+ +S ++++KIFVG V D
Sbjct: 62 TTVEELDAAMNARPHKVDGGVVEPKRAVSRE--DSPRPGAHLTVKKIFVG-VKEDTEGH- 117
Query: 180 LLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCR-- 237
HF YG+IE + D+ +GK +GFA + + ++ TV+G R
Sbjct: 118 ---HFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDPDSVDTIVIQKYHTVNGHNCEVRKA 174
Query: 238 LADNKKAKPMGPDGG-GPG--NVSMNHGDGMG 266
L++ + A G PG S +G G G
Sbjct: 175 LSNQELASASSSQRGCSPGYSGGSRGYGSGQG 206
>ZFIN|ZDB-GENE-060312-43 [details] [associations]
symbol:rbm24b "RNA binding motif protein 24b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0001947 "heart
looping" evidence=IMP] [GO:0072358 "cardiovascular system
development" evidence=IGI] [GO:0003228 "atrial cardiac muscle
tissue development" evidence=IMP] [GO:0003229 "ventricular cardiac
muscle tissue development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-060312-43 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0001947 GO:GO:0003229
GeneTree:ENSGT00390000002308 GO:GO:0003228 EMBL:CT027645
IPI:IPI00898048 ProteinModelPortal:E9QCG4
Ensembl:ENSDART00000127556 Bgee:E9QCG4 Uniprot:E9QCG4
Length = 245
Score = 200 (75.5 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 41/83 (49%), Positives = 51/83 (61%)
Query: 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAM 126
D T K+F+ GL + TT LR F +GE+EEAVVI D+ TGKS+GYGF+T A
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAE 66
Query: 127 LALKEPSKKIDGRVTVTNLAVAG 149
A K+P+ IDGR NLA G
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLG 89
Score = 140 (54.3 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 32/87 (36%), Positives = 45/87 (51%)
Query: 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQ 219
D + KIFVG +P + L +F +GEIEE + D+QTGK +G+ A+
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAE 66
Query: 220 AALVDPIKTVDGKQLNCRLADNKKAKP 246
A DP +DG++ N LA AKP
Sbjct: 67 RACKDPNPIIDGRKANVNLA-YLGAKP 92
>ZFIN|ZDB-GENE-040628-1 [details] [associations]
symbol:rbm24a "RNA binding motif protein 24a"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003228
"atrial cardiac muscle tissue development" evidence=IMP]
[GO:0072358 "cardiovascular system development" evidence=IGI]
[GO:0001947 "heart looping" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040628-1 GO:GO:0005634
GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 GO:GO:0001947 GO:GO:0043488 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
EMBL:AB080735 IPI:IPI00506301 RefSeq:NP_998030.1 UniGene:Dr.159425
ProteinModelPortal:Q76LC6 SMR:Q76LC6 STRING:Q76LC6
Ensembl:ENSDART00000110862 GeneID:405801 KEGG:dre:405801 CTD:405801
GeneTree:ENSGT00390000002308 OrthoDB:EOG4KWJVF NextBio:20817766
ArrayExpress:Q76LC6 Bgee:Q76LC6 GO:GO:0003228 Uniprot:Q76LC6
Length = 230
Score = 199 (75.1 bits), Expect = 1.4e-15, P = 1.4e-15
Identities = 41/83 (49%), Positives = 51/83 (61%)
Query: 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAM 126
D T K+F+ GL + TT LR F +GE+EEAVVI D+ TGKS+GYGF+T A
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAD 66
Query: 127 LALKEPSKKIDGRVTVTNLAVAG 149
A K+P+ IDGR NLA G
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLG 89
Score = 138 (53.6 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 32/87 (36%), Positives = 44/87 (50%)
Query: 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQ 219
D + KIFVG +P + L +F +GEIEE + D+QTGK +G+ A
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAD 66
Query: 220 AALVDPIKTVDGKQLNCRLADNKKAKP 246
A DP +DG++ N LA AKP
Sbjct: 67 RACKDPNPIIDGRKANVNLA-YLGAKP 92
>UNIPROTKB|F1PP12 [details] [associations]
symbol:F1PP12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03007418
ProteinModelPortal:F1PP12 Ensembl:ENSCAFT00000029311 Uniprot:F1PP12
Length = 229
Score = 199 (75.1 bits), Expect = 1.4e-15, P = 1.4e-15
Identities = 63/222 (28%), Positives = 105/222 (47%)
Query: 59 SVRSIADADPTQR-KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFI 117
+++S + +P Q +LFIRGL ++TT E LR F +G L + VV++D T S+ +GF+
Sbjct: 1 TLKSESLKEPKQLWRLFIRGLNFETTNESLRGHFKQWGILMDCVVMIDPNTRHSRRFGFV 60
Query: 118 TFKHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSA 177
+ ++ A+ K++ R+ +AV+ +S ++ +K FVG + D
Sbjct: 61 MYATVEKVDAAVNVRPHKVN-RIGKPKMAVSRE--DSQRPGAHLTGKKTFVGGIKEDTEE 117
Query: 178 DKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCR 237
L +F YGEI + D+ + K +GFA + ++ TV+G R
Sbjct: 118 HHLRHYFEQYGEIRMIEIMTDQGSDKKRGFAFVTCDDHDSIDKIVIQKQHTVNGHNYEVR 177
Query: 238 LADNK----------KAKPMGP-DGGGPGNVSMNHGDGMGMV 268
A +K ++K G DGG GN S G G G +
Sbjct: 178 RALSKQEMASASTSRRSKGSGNFDGGCGGNFSGYGGSGNGYI 219
>TAIR|locus:2133862 [details] [associations]
symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
metabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
Length = 455
Score = 218 (81.8 bits), Expect = 1.5e-15, P = 1.5e-15
Identities = 60/211 (28%), Positives = 102/211 (48%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF------------ 119
KLFI G+ WDT E L+ F YG+L EAV++ D+ TG+++G+GFI F
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD 75
Query: 120 KHI-DGAMLALKEPSKKIDGRVTVTNLAVAGN-SGNSTNNPVDVSLRKIFVGNVPNDMSA 177
KHI DG + K+ + D +V + + S + N +KIFVG +P+ ++
Sbjct: 76 KHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSITE 135
Query: 178 DKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCR 237
+ +F +G I + + +D T +P+GF + + E L ++GK + +
Sbjct: 136 AEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVK 195
Query: 238 LADNKKAKPMGPDGGGPGNVSMNHGDGMGMV 268
A K+ P+ P + +G+ G+V
Sbjct: 196 RAVPKELSSTTPNRS-P---LIGYGNNYGVV 222
Score = 118 (46.6 bits), Expect = 0.00039, P = 0.00039
Identities = 30/114 (26%), Positives = 54/114 (47%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALK 130
+K+F+ GL T ++ F +G + + VV+ D T + +G+GFITF + + L
Sbjct: 122 KKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLH 181
Query: 131 EPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHF 184
+ +++G++ AV ++T N + G VPN SA+ F
Sbjct: 182 KTFHELNGKMVEVKRAVPKELSSTTPNRSPLIGYGNNYGVVPNRSSANSYFNSF 235
>UNIPROTKB|F1M5L3 [details] [associations]
symbol:F1M5L3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00358908 Ensembl:ENSRNOT00000041535
Uniprot:F1M5L3
Length = 364
Score = 215 (80.7 bits), Expect = 1.5e-15, P = 1.5e-15
Identities = 67/208 (32%), Positives = 97/208 (46%)
Query: 67 DPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFIT---FKHI 122
+P Q RKLFI GL ++TT + LR F G L + VV+ D T S+G+GF+T + +
Sbjct: 31 EPEQLRKLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEV 90
Query: 123 DGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLA 182
D AM A P K +DGRV AV+ +S + ++KIFVG + D L
Sbjct: 91 DAAMCA--RPHK-VDGRVVEPKRAVSRE--DSVKPGAHLMVKKIFVGGIKEDTEEYNLRD 145
Query: 183 HFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNK 242
+F YG+ E G + K +GFA + + +V T++G + A +K
Sbjct: 146 YFEKYGKTETIE-GRQAEWEK-RGFAFVTFDDQDTVDKIVVQKHHTINGHNCEVKRALSK 203
Query: 243 KAKPMGPD----GGGPGNVSMNHGDGMG 266
+ P GGG N M G G
Sbjct: 204 QEMPCAGSQRGRGGGSSNF-MGRGGNFG 230
>UNIPROTKB|F1M117 [details] [associations]
symbol:F1M117 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00558412 Ensembl:ENSRNOT00000023321
Uniprot:F1M117
Length = 366
Score = 215 (80.7 bits), Expect = 1.5e-15, P = 1.5e-15
Identities = 67/208 (32%), Positives = 97/208 (46%)
Query: 67 DPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFIT---FKHI 122
+P Q RKLFI GL ++TT + LR F G L + VV+ D T S+G+GF+T + +
Sbjct: 31 EPEQLRKLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEV 90
Query: 123 DGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLA 182
D AM A P K +DGRV AV+ +S + ++KIFVG + D L
Sbjct: 91 DAAMCA--RPHK-VDGRVVEPKRAVSRE--DSVKPGAHLMVKKIFVGGIKEDTEEYNLRD 145
Query: 183 HFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNK 242
+F YG+ E G + K +GFA + + +V T++G + A +K
Sbjct: 146 YFEKYGKTETIE-GRQAEWEK-RGFAFVTFDDQDTVDKIVVQKHHTINGHNCEVKRALSK 203
Query: 243 KAKPMGPD----GGGPGNVSMNHGDGMG 266
+ P GGG N M G G
Sbjct: 204 QEMPCAGSQRGRGGGSSNF-MGRGGNFG 230
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 212 (79.7 bits), Expect = 1.9e-15, P = 1.9e-15
Identities = 68/245 (27%), Positives = 121/245 (49%)
Query: 13 GAVLSDLESPNRLTPQDARKIVERLTSDQLLDVLSSAVARHDDVLE-SVRSIAD-ADPTQ 70
G+V + E+ N L QD + E DV S DV E +V A+ +P++
Sbjct: 91 GSVAVE-ETENSLESQDVSEGDESEGDASEGDV-SEGDESEGDVSEGAVSERAEFPEPSE 148
Query: 71 R-KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLAL 129
KLF+ L +D ++ L +F G +E A VI ++ T +S+G+GF+T +D A A+
Sbjct: 149 EAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAV 208
Query: 130 KEPSK-KIDGRV-TVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACY 187
++ ++ ++GR+ TV A G+ + + R ++VGN+P D+ +L F+ +
Sbjct: 209 EKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFR-VYVGNLPWDVDNGRLEQLFSEH 267
Query: 188 GEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKPM 247
G++ E + +D++TG+ +GF + L + I +DG+ L R A+
Sbjct: 268 GKVVEARVVYDRETGRSRGFGFVTMSDVD----ELNEAISALDGQNLEGRAIRVNVAEER 323
Query: 248 GPDGG 252
P G
Sbjct: 324 PPRRG 328
>UNIPROTKB|F1M0H6 [details] [associations]
symbol:F1M0H6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00766574
Ensembl:ENSRNOT00000044621 Uniprot:F1M0H6
Length = 360
Score = 207 (77.9 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 66/208 (31%), Positives = 102/208 (49%)
Query: 67 DPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF---KHI 122
+P Q RKLFI GL ++T + LR F G L + VV+ D T S+G+GF+T+ + +
Sbjct: 27 EPEQLRKLFIGGLSFETADDSLREHFKKRGTLTDCVVMRDPQTKCSRGFGFVTYSCVEEV 86
Query: 123 DGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLA 182
D AM A K+DGRV AV+ +S + ++K FVG + D L
Sbjct: 87 DAAMCAWLH---KVDGRVVEPKKAVSRE--DSVKLGAHLMVKKTFVGGIKEDTEEYNLKD 141
Query: 183 HFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNK 242
+F YG+IE + ++Q+G+ +GFA ++ + +V T++G + A +K
Sbjct: 142 YFEKYGKIETEGME-NRQSGR-RGFAFAIFGDHD-VDKIVVQKHHTINGHNCEVKKALSK 198
Query: 243 -KAKPMGPD---GGGPGNVSMNHGDGMG 266
+ G GGG GN M G G
Sbjct: 199 LEMHSAGSQRGRGGGYGNF-MGCGGNFG 225
Score = 42 (19.8 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 248 GPDGGGPGNVSMNHGDGMG 266
G GGGPG + G G G
Sbjct: 269 GYGGGGPGYGNQGGGSGGG 287
>UNIPROTKB|F1N235 [details] [associations]
symbol:F1N235 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02006449 IPI:IPI01002976
Ensembl:ENSBTAT00000014868 OMA:LENGTGR Uniprot:F1N235
Length = 353
Score = 213 (80.0 bits), Expect = 2.3e-15, P = 2.3e-15
Identities = 60/200 (30%), Positives = 97/200 (48%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFK---HIDGAMLA 128
KLFI L +TT E L + + +G L + V+I D A+ KS+ +GFITF +D AM A
Sbjct: 22 KLFIGDLSSETTEESLWNYYRQWGYLTDCVLIRDPASQKSRRFGFITFSSMAELDAAMAA 81
Query: 129 LKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYG 188
P IDG++ + AV + V +K+FVG + DM L +F YG
Sbjct: 82 --RPHF-IDGKMVMPKRAVPREDHGKLGALITV--KKLFVGGITEDMKEHHLRDYFEKYG 136
Query: 189 EIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKPMG 248
+I + D Q+GK +GF + + ++ T++G + R A +++ + G
Sbjct: 137 KINAIEIVTDGQSGKKRGFGFITFDDHDPVDKIVLQKNHTINGHRAEVRKALSRQERQEG 196
Query: 249 PD--GGGPGNVSMNHGDGMG 266
G G+V + + G+G
Sbjct: 197 QHLRSRGEGDVGLGYFHGVG 216
>UNIPROTKB|A5GFN7 [details] [associations]
symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:CR956362 HOVERGEN:HBG108399
GeneTree:ENSGT00390000002308 UniGene:Ssc.29738
ProteinModelPortal:A5GFN7 STRING:A5GFN7 Ensembl:ENSSSCT00000033672
ArrayExpress:A5GFN7 Uniprot:A5GFN7
Length = 193
Score = 197 (74.4 bits), Expect = 2.4e-15, P = 2.4e-15
Identities = 41/100 (41%), Positives = 57/100 (57%)
Query: 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAM 126
D T K+F+ GL + TT LR F +G++EEAVVI D+ TGKS+GYGF+T A
Sbjct: 30 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89
Query: 127 LALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKI 166
A K+P+ IDGR NLA G S + ++++
Sbjct: 90 RACKDPNPNIDGRKANVNLAYLGAKPRSLQTGFAIGVQQL 129
Score = 135 (52.6 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 34/102 (33%), Positives = 48/102 (47%)
Query: 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQ 219
D + KIFVG +P + L +F +G+IEE + D+QTGK +G+ A+
Sbjct: 30 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89
Query: 220 AALVDPIKTVDGKQLNCRLADNKKAKPMGPDGGGPGNVSMNH 261
A DP +DG++ N LA AKP G V H
Sbjct: 90 RACKDPNPNIDGRKANVNLA-YLGAKPRSLQTGFAIGVQQLH 130
>UNIPROTKB|D4A8U2 [details] [associations]
symbol:D4A8U2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00947740
ProteinModelPortal:D4A8U2 Ensembl:ENSRNOT00000064543
ArrayExpress:D4A8U2 Uniprot:D4A8U2
Length = 196
Score = 197 (74.4 bits), Expect = 2.4e-15, P = 2.4e-15
Identities = 66/204 (32%), Positives = 98/204 (48%)
Query: 67 DPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF---KHI 122
+P Q RKLFI GL ++ T + LR F +G L + VV+ D T +S+ + F+T+ K +
Sbjct: 8 EPEQLRKLFIGGLSFEATDDSLREHFEKWGTLTDCVVMRDPQTKRSRSFSFVTYSCVKEV 67
Query: 123 DGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLA 182
D AM A +P +DGRV AV+ +S ++++KIFVG + D L
Sbjct: 68 DAAMCA--QPHN-VDGRVVEPKRAVSRE--DSVKPGAHLTVKKIFVGGIKEDTEEYNLRD 122
Query: 183 HFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNK 242
+F YG+I+ + D+ +GK + LFV T + VD I G N
Sbjct: 123 YFEKYGKIKTMEVMEDRLSGKER--LLFV--TFDDHDT--VDKIVGRGGGSGNFM----G 172
Query: 243 KAKPMGPDGGGPGNVSMNHGDGMG 266
+ G G G GN +G G G
Sbjct: 173 RGGNFGRGGNGYGNQGGGYGGGGG 196
>UNIPROTKB|Q5ZJX4 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 GO:GO:0030154
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOGENOM:HOG000276232 HSSP:Q9H0Z9 HOVERGEN:HBG108399
OrthoDB:EOG4DV5NS eggNOG:NOG248750 EMBL:AJ720310 IPI:IPI00586902
UniGene:Gga.5690 ProteinModelPortal:Q5ZJX4 SMR:Q5ZJX4
InParanoid:Q5ZJX4 Uniprot:Q5ZJX4
Length = 215
Score = 196 (74.1 bits), Expect = 3.1e-15, P = 3.1e-15
Identities = 41/100 (41%), Positives = 57/100 (57%)
Query: 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAM 126
D T K+F+ GL + TT LR F +G++EEAVVI D+ TGKS+GYGF+T A
Sbjct: 7 DTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 127 LALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKI 166
A K+P+ IDGR NLA G S + ++++
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAKPRSIQTGFTIGVQQL 106
Score = 138 (53.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 34/102 (33%), Positives = 48/102 (47%)
Query: 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQ 219
D + KIFVG +P + L +F +G+IEE + D+QTGK +G+ A+
Sbjct: 7 DTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 220 AALVDPIKTVDGKQLNCRLADNKKAKPMGPDGGGPGNVSMNH 261
A DP +DG++ N LA AKP G V H
Sbjct: 67 RACKDPNPIIDGRKANVNLA-YLGAKPRSIQTGFTIGVQQLH 107
>ZFIN|ZDB-GENE-030131-5923 [details] [associations]
symbol:rbm38 "RNA binding motif protein 38"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-5923 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 HSSP:Q61474
HOVERGEN:HBG108399 EMBL:AB097829 IPI:IPI00861911 UniGene:Dr.80564
ProteinModelPortal:Q7T2V9 SMR:Q7T2V9 STRING:Q7T2V9
InParanoid:Q7T2V9 Uniprot:Q7T2V9
Length = 246
Score = 195 (73.7 bits), Expect = 4.0e-15, P = 4.0e-15
Identities = 41/93 (44%), Positives = 55/93 (59%)
Query: 57 LESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGF 116
LE++ D T K+F+ GL + TT LR F +G+++EAVVI D+ TGKS+GYGF
Sbjct: 11 LETMYPSIQKDTTFTKIFVGGLPYHTTDASLRKYFETFGDIDEAVVITDRQTGKSRGYGF 70
Query: 117 ITFKHIDGAMLALKEPSKKIDGRVTVTNLAVAG 149
+T A A K+P+ IDGR NLA G
Sbjct: 71 VTMMDKSAAERACKDPNPIIDGRKANVNLAYLG 103
Score = 142 (55.0 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 34/102 (33%), Positives = 49/102 (48%)
Query: 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQ 219
D + KIFVG +P + L +F +G+I+E + D+QTGK +G+ A+
Sbjct: 21 DTTFTKIFVGGLPYHTTDASLRKYFETFGDIDEAVVITDRQTGKSRGYGFVTMMDKSAAE 80
Query: 220 AALVDPIKTVDGKQLNCRLADNKKAKPMGPDGGGPGNVSMNH 261
A DP +DG++ N LA AKP P G V H
Sbjct: 81 RACKDPNPIIDGRKANVNLA-YLGAKPRSPLTGYSTGVQQVH 121
>UNIPROTKB|E1BZ17 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0010830 "regulation of
myotube differentiation" evidence=IEA] [GO:0043488 "regulation of
mRNA stability" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 GO:GO:0010830
GeneTree:ENSGT00390000002308 EMBL:AADN02027548 EMBL:AADN02027547
IPI:IPI00580084 ProteinModelPortal:E1BZ17
Ensembl:ENSGALT00000020752 OMA:ILHRSCL Uniprot:E1BZ17
Length = 245
Score = 195 (73.7 bits), Expect = 4.0e-15, P = 4.0e-15
Identities = 40/83 (48%), Positives = 51/83 (61%)
Query: 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAM 126
D T K+F+ GL + TT LR F +G++EEAVVI D+ TGKS+GYGF+T A
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 127 LALKEPSKKIDGRVTVTNLAVAG 149
A K+P+ IDGR NLA G
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLG 89
Score = 136 (52.9 bits), Expect = 8.4e-07, P = 8.4e-07
Identities = 31/87 (35%), Positives = 45/87 (51%)
Query: 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQ 219
D + KIFVG +P + L +F +G+IEE + D+QTGK +G+ A+
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 220 AALVDPIKTVDGKQLNCRLADNKKAKP 246
A DP +DG++ N LA AKP
Sbjct: 67 RACKDPNPIIDGRKANVNLA-YLGAKP 92
>UNIPROTKB|Q6GQD3 [details] [associations]
symbol:rbm24-a "RNA-binding protein 24-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0010830 "regulation of myotube differentiation" evidence=IMP]
[GO:0043488 "regulation of mRNA stability" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 EMBL:AF223427 EMBL:BC072812 RefSeq:NP_001080995.1
UniGene:Xl.12316 HSSP:Q9H0Z9 ProteinModelPortal:Q6GQD3 SMR:Q6GQD3
GeneID:394318 KEGG:xla:394318 CTD:394318 Xenbase:XB-GENE-866276
HOVERGEN:HBG108399 Uniprot:Q6GQD3
Length = 225
Score = 195 (73.7 bits), Expect = 4.0e-15, P = 4.0e-15
Identities = 40/83 (48%), Positives = 51/83 (61%)
Query: 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAM 126
D T K+F+ GL + TT LR F +G++EEAVVI D+ TGKS+GYGF+T A
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 127 LALKEPSKKIDGRVTVTNLAVAG 149
A K+P+ IDGR NLA G
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLG 89
Score = 136 (52.9 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 31/87 (35%), Positives = 45/87 (51%)
Query: 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQ 219
D + KIFVG +P + L +F +G+IEE + D+QTGK +G+ A+
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 220 AALVDPIKTVDGKQLNCRLADNKKAKP 246
A DP +DG++ N LA AKP
Sbjct: 67 RACKDPNPIIDGRKANVNLA-YLGAKP 92
>UNIPROTKB|Q6P8A7 [details] [associations]
symbol:rbm24 "RNA-binding protein 24" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0010830 "regulation of myotube differentiation"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
GO:GO:0043488 HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9
HOVERGEN:HBG108399 CTD:221662 OrthoDB:EOG4DV5NS EMBL:BC061322
RefSeq:NP_989016.1 UniGene:Str.6492 ProteinModelPortal:Q6P8A7
SMR:Q6P8A7 STRING:Q6P8A7 GeneID:394612 KEGG:xtr:394612
Xenbase:XB-GENE-493647 eggNOG:NOG248750 InParanoid:Q6P8A7
Bgee:Q6P8A7 Uniprot:Q6P8A7
Length = 226
Score = 195 (73.7 bits), Expect = 4.0e-15, P = 4.0e-15
Identities = 40/83 (48%), Positives = 51/83 (61%)
Query: 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAM 126
D T K+F+ GL + TT LR F +G++EEAVVI D+ TGKS+GYGF+T A
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 127 LALKEPSKKIDGRVTVTNLAVAG 149
A K+P+ IDGR NLA G
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLG 89
Score = 136 (52.9 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 31/87 (35%), Positives = 45/87 (51%)
Query: 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQ 219
D + KIFVG +P + L +F +G+IEE + D+QTGK +G+ A+
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 220 AALVDPIKTVDGKQLNCRLADNKKAKP 246
A DP +DG++ N LA AKP
Sbjct: 67 RACKDPNPIIDGRKANVNLA-YLGAKP 92
>UNIPROTKB|Q9I8B3 [details] [associations]
symbol:rbm24-b "RNA-binding protein 24-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0010830 "regulation of myotube differentiation" evidence=ISS]
[GO:0043488 "regulation of mRNA stability" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ271404
EMBL:BC044956 RefSeq:NP_001079578.1 UniGene:Xl.467
ProteinModelPortal:Q9I8B3 SMR:Q9I8B3 GeneID:379265 KEGG:xla:379265
CTD:379265 Xenbase:XB-GENE-6256347 Uniprot:Q9I8B3
Length = 224
Score = 195 (73.7 bits), Expect = 4.0e-15, P = 4.0e-15
Identities = 40/83 (48%), Positives = 51/83 (61%)
Query: 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAM 126
D T K+F+ GL + TT LR F +G++EEAVVI D+ TGKS+GYGF+T A
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 127 LALKEPSKKIDGRVTVTNLAVAG 149
A K+P+ IDGR NLA G
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLG 89
Score = 136 (52.9 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 31/87 (35%), Positives = 45/87 (51%)
Query: 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQ 219
D + KIFVG +P + L +F +G+IEE + D+QTGK +G+ A+
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 220 AALVDPIKTVDGKQLNCRLADNKKAKP 246
A DP +DG++ N LA AKP
Sbjct: 67 RACKDPNPIIDGRKANVNLA-YLGAKP 92
>TAIR|locus:4515103555 [details] [associations]
symbol:AT5G11412 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005576 "extracellular region"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:DQ487706 IPI:IPI00775531 RefSeq:NP_001119208.1
UniGene:At.69225 ProteinModelPortal:Q1G378 SMR:Q1G378 STRING:Q1G378
EnsemblPlants:AT5G11412.1 GeneID:6240527 KEGG:ath:AT5G11412
TAIR:At5g11412 OMA:IDGREAK PhylomeDB:Q1G378 ProtClustDB:CLSN2925591
Genevestigator:Q1G378 Uniprot:Q1G378
Length = 175
Score = 195 (73.7 bits), Expect = 4.0e-15, P = 4.0e-15
Identities = 36/93 (38%), Positives = 54/93 (58%)
Query: 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDG 124
+ D K+++ GL W+T EGLRS F +G++ ++ D+ TG+S+GYGF+TF+ +
Sbjct: 46 NVDTRYTKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAES 105
Query: 125 AMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNN 157
A A + P IDGR NLA G N+ N
Sbjct: 106 ATRACQNPKPVIDGREAKCNLAYIGGRVNNNQN 138
Score = 132 (51.5 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 26/84 (30%), Positives = 46/84 (54%)
Query: 156 NNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTA 215
N VD KI+VG +P + + L ++F +G+I + D++TG+ +G+ ++ A
Sbjct: 44 NENVDTRYTKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDA 103
Query: 216 EGAQAALVDPIKTVDGKQLNCRLA 239
E A A +P +DG++ C LA
Sbjct: 104 ESATRACQNPKPVIDGREAKCNLA 127
>TAIR|locus:2044370 [details] [associations]
symbol:AT2G46780 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT022057
IPI:IPI00944264 RefSeq:NP_182201.4 UniGene:At.22279
ProteinModelPortal:Q501B0 SMR:Q501B0 PRIDE:Q501B0
EnsemblPlants:AT2G46780.1 GeneID:819291 KEGG:ath:AT2G46780
TAIR:At2g46780 OMA:FPYSTYG PhylomeDB:Q501B0 ProtClustDB:CLSN2722623
Genevestigator:Q501B0 Uniprot:Q501B0
Length = 336
Score = 200 (75.5 bits), Expect = 4.4e-15, Sum P(2) = 4.4e-15
Identities = 40/83 (48%), Positives = 52/83 (62%)
Query: 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAM 126
D K+F+ GL W+T + +R F +GE+ EAVVI DK TG+SKGYGF+TFK + AM
Sbjct: 18 DTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAM 77
Query: 127 LALKEPSKKIDGRVTVTNLAVAG 149
A + + IDGR NLA G
Sbjct: 78 RACQNMNPVIDGRRANCNLACLG 100
Score = 171 (65.3 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 42/118 (35%), Positives = 57/118 (48%)
Query: 152 GNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFV 211
GN NN D L KIFVG + + D + +F +GEI E + DK TG+ KG+
Sbjct: 12 GN--NNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVT 69
Query: 212 YKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKPMGPDGGGPGNVSMNH-GDGMGMV 268
+K AE A A + +DG++ NC LA KP P G G G+G+V
Sbjct: 70 FKEAEAAMRACQNMNPVIDGRRANCNLACLGAQKPRPPTSPRHGTGRFRSPGSGVGLV 127
Score = 45 (20.9 bits), Expect = 4.4e-15, Sum P(2) = 4.4e-15
Identities = 19/60 (31%), Positives = 23/60 (38%)
Query: 367 YRLPPSSAGMPSGGYPEAGHYGLSSTSAGYPSQHHQAAGTSPVPRVPPG-------GMYP 419
+R P S G+ + P G SS+SA Q Q P P G GMYP
Sbjct: 117 FRSPGSGVGLVA---PSPQFRGSSSSSAFVHQQQQQHTAQFPFPYSTYGFSGYSQEGMYP 173
>UNIPROTKB|F6VZ39 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955
HGNC:HGNC:15818 IPI:IPI00927190 ProteinModelPortal:F6VZ39
SMR:F6VZ39 PRIDE:F6VZ39 Ensembl:ENST00000344785 ArrayExpress:F6VZ39
Bgee:F6VZ39 Uniprot:F6VZ39
Length = 123
Score = 194 (73.4 bits), Expect = 5.3e-15, P = 5.3e-15
Identities = 41/100 (41%), Positives = 57/100 (57%)
Query: 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAM 126
D T K+F+ GL + TT LR F +G++EEAVVI D+ TGKS+GYGF+T A
Sbjct: 7 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 127 LALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKI 166
A K+P+ IDGR NLA G S + ++++
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAKPRSLQTGFAIGVQQL 106
Score = 134 (52.2 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 34/102 (33%), Positives = 48/102 (47%)
Query: 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQ 219
D + KIFVG +P + L +F +G+IEE + D+QTGK +G+ A+
Sbjct: 7 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 220 AALVDPIKTVDGKQLNCRLADNKKAKPMGPDGGGPGNVSMNH 261
A DP +DG++ N LA AKP G V H
Sbjct: 67 RACKDPNPIIDGRKANVNLA-YLGAKPRSLQTGFAIGVQQLH 107
>MGI|MGI:3610364 [details] [associations]
symbol:Rbm24 "RNA binding motif protein 24" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IMP] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:3610364 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
GO:GO:0043488 HOGENOM:HOG000276232 GO:GO:0010830 CTD:221662
GeneTree:ENSGT00390000002308 OMA:LQADRMQ OrthoDB:EOG4DV5NS
EMBL:AC124411 IPI:IPI00380986 RefSeq:NP_001074894.1
UniGene:Mm.38269 ProteinModelPortal:D3Z4I3 SMR:D3Z4I3
Ensembl:ENSMUST00000037923 GeneID:666794 KEGG:mmu:666794
UCSC:uc007qhe.1 NextBio:430851 Bgee:D3Z4I3 Uniprot:D3Z4I3
Length = 236
Score = 194 (73.4 bits), Expect = 5.3e-15, P = 5.3e-15
Identities = 40/83 (48%), Positives = 51/83 (61%)
Query: 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAM 126
D T K+F+ GL + TT LR F +G++EEAVVI D+ TGKS+GYGF+T A
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 127 LALKEPSKKIDGRVTVTNLAVAG 149
A K+P+ IDGR NLA G
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLG 89
Score = 134 (52.2 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 31/87 (35%), Positives = 45/87 (51%)
Query: 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQ 219
D + KIFVG +P + L +F +G+IEE + D+QTGK +G+ A+
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 220 AALVDPIKTVDGKQLNCRLADNKKAKP 246
A DP +DG++ N LA AKP
Sbjct: 67 RACKDPNPIIDGRKANVNLA-YLGAKP 92
>RGD|1584029 [details] [associations]
symbol:Rbm24 "RNA binding motif protein 24" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA;ISO] [GO:0010830
"regulation of myotube differentiation" evidence=IEA;ISO]
[GO:0043488 "regulation of mRNA stability" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1584029 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 GO:GO:0043488 GO:GO:0010830 CTD:221662
OrthoDB:EOG4DV5NS IPI:IPI00214952 RefSeq:NP_001178029.1
UniGene:Rn.199020 ProteinModelPortal:D3ZLP6
Ensembl:ENSRNOT00000022768 GeneID:690139 KEGG:rno:690139
NextBio:740266 Uniprot:D3ZLP6
Length = 236
Score = 194 (73.4 bits), Expect = 5.3e-15, P = 5.3e-15
Identities = 40/83 (48%), Positives = 51/83 (61%)
Query: 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAM 126
D T K+F+ GL + TT LR F +G++EEAVVI D+ TGKS+GYGF+T A
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 127 LALKEPSKKIDGRVTVTNLAVAG 149
A K+P+ IDGR NLA G
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLG 89
Score = 134 (52.2 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 31/87 (35%), Positives = 45/87 (51%)
Query: 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQ 219
D + KIFVG +P + L +F +G+IEE + D+QTGK +G+ A+
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 220 AALVDPIKTVDGKQLNCRLADNKKAKP 246
A DP +DG++ N LA AKP
Sbjct: 67 RACKDPNPIIDGRKANVNLA-YLGAKP 92
>MGI|MGI:1889294 [details] [associations]
symbol:Rbm38 "RNA binding motif protein 38" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO;IMP]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005829 "cytosol" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006977 "DNA damage response, signal transduction
by p53 class mediator resulting in cell cycle arrest" evidence=ISO]
[GO:0006978 "DNA damage response, signal transduction by p53 class
mediator resulting in transcription of p21 class mediator"
evidence=ISO] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007050
"cell cycle arrest" evidence=ISO] [GO:0008285 "negative regulation
of cell proliferation" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IDA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1889294 GO:GO:0005829 GO:GO:0005634
GO:GO:0008285 GO:GO:0030154 GO:GO:0006977 GO:GO:0008380
GO:GO:0000166 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0007050 EMBL:CH466551 GO:GO:0003730 GO:GO:0043484
GO:GO:0006978 HOGENOM:HOG000276232 GO:GO:0070935 EMBL:AL928599
GO:GO:0010830 HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308
OrthoDB:EOG4DV5NS eggNOG:NOG248750 CTD:55544 OMA:VGYGYPA
EMBL:X75316 EMBL:AK146026 EMBL:AK162141 EMBL:AK172625 EMBL:BC085307
IPI:IPI00122313 PIR:S38384 RefSeq:NP_062420.2 UniGene:Mm.485782
ProteinModelPortal:Q62176 SMR:Q62176 STRING:Q62176
PhosphoSite:Q62176 PaxDb:Q62176 PRIDE:Q62176
Ensembl:ENSMUST00000029014 Ensembl:ENSMUST00000173393 GeneID:56190
KEGG:mmu:56190 UCSC:uc008odh.1 InParanoid:Q5U418 ChiTaRS:RBM38
NextBio:311992 Bgee:Q62176 CleanEx:MM_RBM38 Genevestigator:Q62176
GermOnline:ENSMUSG00000027510 Uniprot:Q62176
Length = 237
Score = 194 (73.4 bits), Expect = 5.3e-15, P = 5.3e-15
Identities = 42/100 (42%), Positives = 57/100 (57%)
Query: 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAM 126
D T K+F+ GL + TT LR F +G++EEAVVI D+ TGKS+GYGF+T A
Sbjct: 28 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAD 87
Query: 127 LALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKI 166
A K+P+ IDGR NLA G S V ++++
Sbjct: 88 RACKDPNPIIDGRKANVNLAYLGAKPRSLQTGFAVGVQQL 127
Score = 133 (51.9 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 34/102 (33%), Positives = 47/102 (46%)
Query: 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQ 219
D + KIFVG +P + L +F +G+IEE + D+QTGK +G+ A
Sbjct: 28 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAD 87
Query: 220 AALVDPIKTVDGKQLNCRLADNKKAKPMGPDGGGPGNVSMNH 261
A DP +DG++ N LA AKP G V H
Sbjct: 88 RACKDPNPIIDGRKANVNLA-YLGAKPRSLQTGFAVGVQQLH 128
>RGD|1308503 [details] [associations]
symbol:Rbm38 "RNA binding motif protein 38" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0006977 "DNA
damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=IEA] [GO:0006978 "DNA
damage response, signal transduction by p53 class mediator
resulting in transcription of p21 class mediator" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0010830
"regulation of myotube differentiation" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1308503 GO:GO:0008285 GO:GO:0006977 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007050 GO:GO:0003730 GO:GO:0043484
GO:GO:0006978 GO:GO:0070935 GO:GO:0010830 EMBL:CH474062
GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS OMA:VGYGYPA
IPI:IPI00190605 UniGene:Rn.17628 Ensembl:ENSRNOT00000008764
Uniprot:D3ZGE9
Length = 237
Score = 194 (73.4 bits), Expect = 5.3e-15, P = 5.3e-15
Identities = 42/100 (42%), Positives = 57/100 (57%)
Query: 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAM 126
D T K+F+ GL + TT LR F +G++EEAVVI D+ TGKS+GYGF+T A
Sbjct: 28 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAD 87
Query: 127 LALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKI 166
A K+P+ IDGR NLA G S V ++++
Sbjct: 88 RACKDPNPIIDGRKANVNLAYLGAKPRSLQTGFAVGVQQL 127
Score = 133 (51.9 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 34/102 (33%), Positives = 47/102 (46%)
Query: 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQ 219
D + KIFVG +P + L +F +G+IEE + D+QTGK +G+ A
Sbjct: 28 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAD 87
Query: 220 AALVDPIKTVDGKQLNCRLADNKKAKPMGPDGGGPGNVSMNH 261
A DP +DG++ N LA AKP G V H
Sbjct: 88 RACKDPNPIIDGRKANVNLA-YLGAKPRSLQTGFAVGVQQLH 128
>UNIPROTKB|D6RF44 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI00967562
ProteinModelPortal:D6RF44 SMR:D6RF44 Ensembl:ENST00000515432
ArrayExpress:D6RF44 Bgee:D6RF44 Uniprot:D6RF44
Length = 112
Score = 194 (73.4 bits), Expect = 5.3e-15, P = 5.3e-15
Identities = 42/119 (35%), Positives = 66/119 (55%)
Query: 73 LFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEP 132
+FI GL WDTT + L+ FS +GE+ + + LD TG+S+G+GF+ FK + + +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 133 SKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
K++G+V A A T PV +KIFVG + D +K+ +F +GE+E
Sbjct: 61 EHKLNGKVIDPKRAKA----MKTKEPV----KKIFVGGLSPDTPEEKIREYFGGFGEVE 111
Score = 98 (39.6 bits), Expect = 0.00020, P = 0.00020
Identities = 24/82 (29%), Positives = 43/82 (52%)
Query: 166 IFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP 225
+F+G + D + L +F+ +GE+ + L D TG+ +GF ++K +E VD
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESES-----VDK 55
Query: 226 IKTVDGKQLNCRLADNKKAKPM 247
+ +LN ++ D K+AK M
Sbjct: 56 VMDQKEHKLNGKVIDPKRAKAM 77
>UNIPROTKB|D4A6Z0 [details] [associations]
symbol:D4A6Z0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00948011
ProteinModelPortal:D4A6Z0 Ensembl:ENSRNOT00000067831 Uniprot:D4A6Z0
Length = 176
Score = 194 (73.4 bits), Expect = 5.3e-15, P = 5.3e-15
Identities = 52/149 (34%), Positives = 80/149 (53%)
Query: 67 DPTQR-KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFI--TFKHID 123
+P QR KLFI GL ++TT + LR F + L + VV+ D T +S+G+GF+ + +D
Sbjct: 8 EPEQRRKLFIGGLSFETTDDSLREHFK-WDTLTDCVVMRDPQTERSRGFGFVYSCVEEVD 66
Query: 124 GAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAH 183
AM A P K +DG V A++ +S + ++KIFVG + D L +
Sbjct: 67 AAMCA--RPHK-VDGHVVEPKRAISRE--DSVKPGAHLMVKKIFVGGIKEDTEEYNLRDY 121
Query: 184 FACYGEIEEGPLGFDKQTGKPKGFALFVY 212
F YG I+ + D+Q+GK +GFA +
Sbjct: 122 FE-YGNIKTIEVVEDRQSGKKRGFAFLTF 149
>UNIPROTKB|F1LVU1 [details] [associations]
symbol:F1LVU1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00950080
Ensembl:ENSRNOT00000064004 Uniprot:F1LVU1
Length = 188
Score = 194 (73.4 bits), Expect = 5.3e-15, P = 5.3e-15
Identities = 64/198 (32%), Positives = 95/198 (47%)
Query: 67 DPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF---KHI 122
+P Q R+LFI GL ++T + LR F G L + VV+ D + +GF+T+ + +
Sbjct: 2 EPEQLRRLFIGGLSFETIEDSLREGFEM-GTLADCVVMRDP-----QSFGFVTYSCVEEV 55
Query: 123 DGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLA 182
D AM A P K +DGRV AV+ + V KIFVG + D L
Sbjct: 56 DAAMCA--RPHK-VDGRVVEPKRAVSREDSVKPGAHLTV---KIFVGGIKEDAEEYNLRD 109
Query: 183 HFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNK 242
+F YG+IE + D+Q+GK +GFA + + +V+ T++G R A +K
Sbjct: 110 YFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVN-YHTINGHNCEVRKALSK 168
Query: 243 K----AKPMGPDGGGPGN 256
+ A GGG GN
Sbjct: 169 QEMQSAGSQSGHGGGSGN 186
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 203 (76.5 bits), Expect = 6.5e-15, P = 6.5e-15
Identities = 51/194 (26%), Positives = 105/194 (54%)
Query: 54 DDVLESVRSIADADPTQR-KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSK 112
D+ ES + +P + KLF+ L +D ++ L +F G +E + VI ++ T +S+
Sbjct: 95 DESFESEDGVGFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSR 154
Query: 113 GYGFITFKHIDGAMLALKE-PSKKIDGR-VTVTNLAVAGNSGNSTNNPVDVSLRKIFVGN 170
G+GF+T ++ A A+++ S +++GR +TV A G+ D + R I+VGN
Sbjct: 155 GFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFR-IYVGN 213
Query: 171 VPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPI--KT 228
+P D+ + +L F+ +G++ + + D++TG+ +GF FV + E + + +
Sbjct: 214 LPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFG-FVQMSNENEVNVAIAALDGQN 272
Query: 229 VDGKQLNCRLADNK 242
++G+ + +A+ +
Sbjct: 273 LEGRAIKVNVAEER 286
>FB|FBgn0004838 [details] [associations]
symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
27C" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
"negative regulation of oskar mRNA translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IMP]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
MINT:MINT-939547 STRING:P48809 PaxDb:P48809
EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
GermOnline:CG10377 Uniprot:P48809
Length = 421
Score = 208 (78.3 bits), Expect = 7.5e-15, Sum P(2) = 7.5e-15
Identities = 51/187 (27%), Positives = 91/187 (48%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
KLF+ GL W+TT E L F +G++ + VV+ + +G+S+G+GF+TF L+
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
+DGR T+ + + P K+F+G +P++++ L F YG++
Sbjct: 68 GPHTLDGR-TIDPKPC---NPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVT 123
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKPMGPDG 251
E + +D++ K +GF ++ + + ++GKQ+ KKA+P G
Sbjct: 124 EVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEI-----KKAEPRDGSG 178
Query: 252 GGPGNVS 258
G N S
Sbjct: 179 GQNSNNS 185
Score = 40 (19.1 bits), Expect = 7.5e-15, Sum P(2) = 7.5e-15
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 246 PMGPDGGGPGN 256
P GP GGG N
Sbjct: 300 PSGPSGGGSWN 310
Score = 40 (19.1 bits), Expect = 7.5e-15, Sum P(2) = 7.5e-15
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 377 PSGGYPEAGHYGLSSTSAGYPSQHHQAAGTSPVPRVPPGG 416
P G P+ +Y + GY + ++ P P GG
Sbjct: 267 PQGPPPQWSNYAGPQQTQGYGGYDMYNSTSTGAPSGPSGG 306
>UNIPROTKB|F1N2T0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:QHPPADN EMBL:DAAA02018246 IPI:IPI00697542 UniGene:Bt.23277
PRIDE:F1N2T0 Ensembl:ENSBTAT00000019699 ArrayExpress:F1N2T0
Uniprot:F1N2T0
Length = 420
Score = 211 (79.3 bits), Expect = 8.0e-15, P = 8.0e-15
Identities = 55/197 (27%), Positives = 89/197 (45%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+FI GL WDT+ + L S +GE+ + + D TG+S+G+GF+ FK L+
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
K+DG++ A A G P +K+FVG + D S +++ +F +GEIE
Sbjct: 209 KEHKLDGKLIDPKRAKA-LKGKEP--P-----KKVFVGGLSPDTSEEQIKEYFGAFGEIE 260
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKA--KPMGP 249
L D +T + +GF Y E + L + + ++A K+ +
Sbjct: 261 NIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQ 320
Query: 250 DGGGPGNVSMNHGDGMG 266
GG G + G G
Sbjct: 321 QKGGRGAAAGGRGGTRG 337
>UNIPROTKB|E2QRT0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
EMBL:AAEX03016723 RefSeq:XP_858404.1 Ensembl:ENSCAFT00000014224
GeneID:476976 KEGG:cfa:476976 NextBio:20852539 Uniprot:E2QRT0
Length = 420
Score = 211 (79.3 bits), Expect = 8.0e-15, P = 8.0e-15
Identities = 55/197 (27%), Positives = 89/197 (45%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+FI GL WDT+ + L S +GE+ + + D TG+S+G+GF+ FK L+
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
K+DG++ A A G P +K+FVG + D S +++ +F +GEIE
Sbjct: 209 KEHKLDGKLIDPKRAKA-LKGKEP--P-----KKVFVGGLSPDTSEEQIKEYFGAFGEIE 260
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKA--KPMGP 249
L D +T + +GF Y E + L + + ++A K+ +
Sbjct: 261 NIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQ 320
Query: 250 DGGGPGNVSMNHGDGMG 266
GG G + G G
Sbjct: 321 QKGGRGAAAGGRGGTRG 337
>UNIPROTKB|O14979 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0034046 "poly(G) RNA binding"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=NAS]
[GO:0006396 "RNA processing" evidence=NAS] [GO:0010468 "regulation
of gene expression" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:D89678 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0006396 GO:GO:0003690 GO:GO:0003697
GO:GO:0010468 GO:GO:0034046 eggNOG:COG0724 GO:GO:0008143
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987
KO:K13044 EMBL:AB017019 EMBL:D89092 EMBL:AB066484 EMBL:CR407623
EMBL:AC124016 EMBL:AB017018 EMBL:BC007392 EMBL:BC011714
EMBL:BC071944 EMBL:AY453824 IPI:IPI00011274 IPI:IPI00045498
IPI:IPI00845282 PIR:JW0079 RefSeq:NP_001193929.1 RefSeq:NP_112740.1
UniGene:Hs.527105 UniGene:Hs.731516 ProteinModelPortal:O14979
SMR:O14979 IntAct:O14979 STRING:O14979 PhosphoSite:O14979
PaxDb:O14979 PRIDE:O14979 DNASU:9987 Ensembl:ENST00000295470
Ensembl:ENST00000349655 Ensembl:ENST00000502762 GeneID:9987
KEGG:hsa:9987 UCSC:uc003hmr.3 GeneCards:GC04M083343 HGNC:HGNC:5037
MIM:607137 neXtProt:NX_O14979 PharmGKB:PA29362 InParanoid:O14979
OMA:QHPPADN OrthoDB:EOG49W2FZ PhylomeDB:O14979 ChiTaRS:HNRPDL
GenomeRNAi:9987 NextBio:37714 ArrayExpress:O14979 Bgee:O14979
CleanEx:HS_HNRPDL Genevestigator:O14979 Uniprot:O14979
Length = 420
Score = 211 (79.3 bits), Expect = 8.0e-15, P = 8.0e-15
Identities = 55/197 (27%), Positives = 89/197 (45%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+FI GL WDT+ + L S +GE+ + + D TG+S+G+GF+ FK L+
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
K+DG++ A A G P +K+FVG + D S +++ +F +GEIE
Sbjct: 209 KEHKLDGKLIDPKRAKA-LKGKEP--P-----KKVFVGGLSPDTSEEQIKEYFGAFGEIE 260
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKA--KPMGP 249
L D +T + +GF Y E + L + + ++A K+ +
Sbjct: 261 NIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQ 320
Query: 250 DGGGPGNVSMNHGDGMG 266
GG G + G G
Sbjct: 321 QKGGRGAAAGGRGGTRG 337
>UNIPROTKB|F1M7F0 [details] [associations]
symbol:F1M7F0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00563307
ProteinModelPortal:F1M7F0 Ensembl:ENSRNOT00000041604 Uniprot:F1M7F0
Length = 224
Score = 191 (72.3 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 57/201 (28%), Positives = 92/201 (45%)
Query: 67 DPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGA 125
+P Q KL I GL + TT E LR+ F +G + VV+ D T +S+ GF+T+ ++
Sbjct: 18 EPEQLHKLCIGGLIFKTTHESLRNHFEKWGTFTDCVVMRDPNTKRSRSSGFVTYNTVEEV 77
Query: 126 MLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFA 185
A+ +K+DGR+ AV+ +S ++++KIF G + D + +F
Sbjct: 78 DAAMNARPQKMDGRLVKPKRAVSRE--DSQRPGTQLTVKKIFEGGIKEDTEEHNVRDYFE 135
Query: 186 CYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAK 245
YG+I+ + D+ +GK K FAL + + TV+G +
Sbjct: 136 HYGKIDMIEIMTDRSSGK-KEFALVPLDDHDSVDKIAIQKYHTVNGTTVK-NFGGGCGCS 193
Query: 246 PMGPDGGGPGNVSMNHGDGMG 266
G D G G +HG G G
Sbjct: 194 FGGNDNFGQGGNFSSHG-GFG 213
>UNIPROTKB|F1P645 [details] [associations]
symbol:LOC607505 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:AAEX03007023 Ensembl:ENSCAFT00000000618 OMA:EMARASP
Uniprot:F1P645
Length = 317
Score = 204 (76.9 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 60/211 (28%), Positives = 97/211 (45%)
Query: 61 RSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFK 120
+S + +P RKLFI GL ++TT E LRS F +G L + VV + +S+G+G + +
Sbjct: 3 KSESPEEPQLRKLFIGGLSFETTDESLRSHFERWGPLPDRVVRREPNAERSRGFGVVP-R 61
Query: 121 HIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNP-VDVSLRKIFVGNVPNDMSADK 179
H++ + A + P R T + S + P ++++KIFVG + D
Sbjct: 62 HLE-EVAAARNPGPT---RWTEESWKQRAASREDSQRPGAHLTVKKIFVGGIKGDAEEHH 117
Query: 180 LLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA 239
L F G+ E + D+ +GK +GFA + + ++ TV+G R A
Sbjct: 118 LRDDFEQDGKTEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHGCEVRKA 177
Query: 240 DNK----KAKPMGPDGGGPGNVSMNHGDGMG 266
+K +A P G GN G G+G
Sbjct: 178 LSKQEMARASPSQRGRSGSGNFGGGRGGGVG 208
>FB|FBgn0004903 [details] [associations]
symbol:Rb97D "Ribonuclear protein at 97D" species:7227
"Drosophila melanogaster" [GO:0007286 "spermatid development"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0007283 "spermatogenesis" evidence=NAS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0007275
GO:GO:0007286 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
eggNOG:COG0724 GeneTree:ENSGT00700000104255 EMBL:L02106
EMBL:BT001320 PIR:S33679 PIR:S33680 RefSeq:NP_001014671.1
RefSeq:NP_001014672.1 RefSeq:NP_001014673.1 RefSeq:NP_001014674.1
RefSeq:NP_001014675.1 RefSeq:NP_001014676.1 RefSeq:NP_001014677.1
RefSeq:NP_524520.1 RefSeq:NP_733172.1 UniGene:Dm.22918
ProteinModelPortal:Q02926 SMR:Q02926 DIP:DIP-18137N IntAct:Q02926
MINT:MINT-957540 STRING:Q02926 PaxDb:Q02926 PRIDE:Q02926
EnsemblMetazoa:FBtr0085093 EnsemblMetazoa:FBtr0100337
EnsemblMetazoa:FBtr0100339 EnsemblMetazoa:FBtr0100340 GeneID:43231
KEGG:dme:Dmel_CG6354 CTD:43231 FlyBase:FBgn0004903
InParanoid:Q02926 OMA:DICELEH OrthoDB:EOG43N5VC PhylomeDB:Q02926
ChiTaRS:Rb97D GenomeRNAi:43231 NextBio:832835 Bgee:Q02926
GermOnline:CG6354 Uniprot:Q02926
Length = 471
Score = 198 (74.8 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 64/215 (29%), Positives = 103/215 (47%)
Query: 39 SDQLLDVLSSAVARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELE 98
SD+ DV+ A DD+ E + + RKLFI GL TT E L+ + +G++
Sbjct: 8 SDESADVIVLADREEDDICE-LEHL-------RKLFIGGLAPYTTEENLKLFYGQWGKVV 59
Query: 99 EAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNP 158
+ VV+ D AT +S+G+GFIT+ A + IDG+ A+ S
Sbjct: 60 DVVVMRDAATKRSRGFGFITYTKSLMVDRAQENRPHIIDGKTVEAKRALPRPERESRET- 118
Query: 159 VDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGA 218
++S++K+FVG + ++ + L +F +G + L DK TGK +GFA + +
Sbjct: 119 -NISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAV 177
Query: 219 QAALVDP---IKTV--DGKQLNCRLADNKKAKPMG 248
A++ IK V D K+ L +K +P G
Sbjct: 178 DKAILKKQHAIKYVHVDVKKSIYNLDKKEKQQPGG 212
Score = 51 (23.0 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 20/61 (32%), Positives = 24/61 (39%)
Query: 367 YRLPPSSAGMPSGGYPEAGHYGLSSTSAGYPS--QHH--QAAGTSPVPRVPPGGMYPNVP 422
Y+ PP G YP G ++ P Q H Q PV +VPP G P P
Sbjct: 287 YQQPPPQQMNGWGPYPPPQQNGWNAPPPPPPGAQQWHANQWGCPPPVQQVPPVGAVP--P 344
Query: 423 P 423
P
Sbjct: 345 P 345
Score = 43 (20.2 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 14/57 (24%), Positives = 18/57 (31%)
Query: 370 PPSSAGMPSGGYPEA-GHYGLSSTSAGYPSQHHQAAGTSPVPRVPPGGMYPNVPPYY 425
PP P G P GH G T+ G + G +P P P +
Sbjct: 331 PPVQQVPPVGAVPPPMGHNGPPPTAPGNWNMPPPVPGAAPPSHQQQSSQQPTPQPNF 387
Score = 40 (19.1 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 400 HHQAAGTSPVPRVPPGGMY-----PNVPPYY 425
+ Q +P+ PP Y P +PPYY
Sbjct: 257 YQQQPPPAPMSAPPPNFNYWGPPPPAMPPYY 287
>TAIR|locus:2115169 [details] [associations]
symbol:AT4G36960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K14411
HSSP:Q14103 UniGene:At.4642 UniGene:At.4643 EMBL:AY048286
EMBL:BT000573 IPI:IPI00527793 RefSeq:NP_001154290.1
RefSeq:NP_568011.1 ProteinModelPortal:Q94AC3 SMR:Q94AC3
IntAct:Q94AC3 PaxDb:Q94AC3 PRIDE:Q94AC3 EnsemblPlants:AT4G36960.1
EnsemblPlants:AT4G36960.2 GeneID:829850 KEGG:ath:AT4G36960
TAIR:At4g36960 HOGENOM:HOG000070627 InParanoid:Q94AC3 OMA:EITDLYM
PhylomeDB:Q94AC3 ProtClustDB:CLSN2689792 Genevestigator:Q94AC3
Uniprot:Q94AC3
Length = 379
Score = 206 (77.6 bits), Expect = 2.2e-14, P = 2.2e-14
Identities = 43/155 (27%), Positives = 81/155 (52%)
Query: 70 QRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLAL 129
+RKL + G+ WD ++GL+ S +G+LE+ +V+ D++TG+S+G+G++TF + A AL
Sbjct: 2 ERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL 61
Query: 130 KEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGE 189
K + R+ +A P + +IFV +P+ +S +HF YGE
Sbjct: 62 KG-EHFLGNRILEVKVATPKEE---MRQPAK-KVTRIFVARIPSSVSESDFRSHFERYGE 116
Query: 190 IEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVD 224
I + + D + + +G + +A+ + + D
Sbjct: 117 ITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMED 151
>UNIPROTKB|F1M4M4 [details] [associations]
symbol:F1M4M4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00558004
Ensembl:ENSRNOT00000049169 Uniprot:F1M4M4
Length = 255
Score = 188 (71.2 bits), Expect = 2.5e-14, P = 2.5e-14
Identities = 61/217 (28%), Positives = 93/217 (42%)
Query: 53 HDDVLESVRSIADADPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKS 111
H ++ S+ + P Q RKLFI GL + TT E LRS F + L VV+ D T +S
Sbjct: 2 HPAIISKSESLKE--PEQLRKLFIGGLSFRTTEESLRSHFEQWATLITCVVMRDPNTERS 59
Query: 112 KGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNV 171
+G GF T+ ++ A+ K+DGRV S + P KIF+ +
Sbjct: 60 RGSGFDTYTTVEEMDAAMNARPHKVDGRVV---------SREDSQRPGAHLTVKIFISGI 110
Query: 172 PNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDG 231
D L +F Y +IE + D+ + K + FA + + + TV+G
Sbjct: 111 KEDTEEHHLRDYFEQYRKIEVIEIMTDRGSRKKRDFAFVTFDEHDSVDKIFIQKYHTVNG 170
Query: 232 KQLNCRLADNKK--AKPMGPDGGGPGNVSMNHGDGMG 266
R A +K+ A G G+ + N+G G
Sbjct: 171 HNCEVRKALSKQEMASASSSQRGESGSGNYNNGGDRG 207
>UNIPROTKB|F1MTY3 [details] [associations]
symbol:F1MTY3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:DAAA02006340
IPI:IPI00699446 Ensembl:ENSBTAT00000013110 Uniprot:F1MTY3
Length = 301
Score = 195 (73.7 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 62/211 (29%), Positives = 95/211 (45%)
Query: 61 RSIADADPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF 119
+S + +P Q RKLFI GL ++TT E LRS S + V+ D T S+G+ F+T+
Sbjct: 3 KSWSPKEPGQLRKLFIGGLSFETTDESLRSHCSH----SPSCVMTDPNTKCSRGFRFVTY 58
Query: 120 KHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADK 179
++ A+ K+D RV V+ G S ++++KIF G + D
Sbjct: 59 ATVEEVDAAMNARPHKVDRRVVEPKRGVS-REG-SQRPGAHLTVKKIFAGGIKEDTEERH 116
Query: 180 LLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA 239
L +F G+IE + D +GK +GFA + + ++ TV+G R A
Sbjct: 117 LRDYFENNGKIEVIEIMTDPSSGKKRGFAFVTFDDHDSVDKTVIQKYHTVNGHNREVRKA 176
Query: 240 DNKK--AKPMGPDGG--GPGNVSMNHGDGMG 266
+K+ A G G GN G G G
Sbjct: 177 LSKQEMASASSSQRGRSGSGNFGGGRGGGFG 207
Score = 38 (18.4 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 373 SAGMPSGGYPEAGHYGLSSTSAGYPS 398
S+G P GG G YG S+S+ Y S
Sbjct: 276 SSG-PDGG---GGGYGGFSSSSNYGS 297
>UNIPROTKB|E2RJI3 [details] [associations]
symbol:LOC608729 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00550000074566 EMBL:AAEX03015120 RefSeq:XP_864182.2
ProteinModelPortal:E2RJI3 Ensembl:ENSCAFT00000015269 GeneID:608729
KEGG:cfa:608729 Uniprot:E2RJI3
Length = 321
Score = 202 (76.2 bits), Expect = 3.1e-14, P = 3.1e-14
Identities = 63/212 (29%), Positives = 95/212 (44%)
Query: 61 RSIADADPTQR-KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF 119
+S + +P Q KLFI+GL TT E LRS G L + VV+ D T S+G+GF T+
Sbjct: 3 KSESPKEPEQLWKLFIKGLSSKTTDESLRSHCEQQGALMDCVVMRDPNTKHSRGFGFTTY 62
Query: 120 KHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADK 179
+ + K+DGRV AV+ +S ++++KIFVG + D
Sbjct: 63 ATREDVDAVMNARPHKMDGRVVEPKRAVSRE--DSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 180 LLAHF-ACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRL 238
L +F Y +IE + D+ +GK +GFA + + ++ V+G R
Sbjct: 121 LKDYFFEQYEKIEVIEIMTDRGSGKKRGFAFVTFDDHDFVDKIVIQKCHPVNGHDHEVRK 180
Query: 239 ADNKK----AKPMGPDGGGPGNVSMNHGDGMG 266
A +K+ A G GN G G G
Sbjct: 181 ALSKQEMASASSSQRSRSGSGNFGGGRGGGFG 212
>TAIR|locus:2017779 [details] [associations]
symbol:AT1G22910 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00523114
RefSeq:NP_973889.1 UniGene:At.26231 ProteinModelPortal:F4I321
SMR:F4I321 EnsemblPlants:AT1G22910.3 GeneID:838898
KEGG:ath:AT1G22910 ArrayExpress:F4I321 Uniprot:F4I321
Length = 347
Score = 198 (74.8 bits), Expect = 4.8e-14, Sum P(2) = 4.8e-14
Identities = 40/92 (43%), Positives = 56/92 (60%)
Query: 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAM 126
D T K+F+ GL W+T E ++ F +GE+ EAVVI DKA+G+SKGYGF+TF+ + A
Sbjct: 9 DTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAAR 68
Query: 127 LALKEPSKKIDGRVTVTNLAVAGNSGNSTNNP 158
A + + IDGR NLA G + + P
Sbjct: 69 SACVDATPVIDGRRANCNLASLGLQRSKPSTP 100
Score = 172 (65.6 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 34/101 (33%), Positives = 58/101 (57%)
Query: 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQ 219
D + K+FVG + + + + HF +GEI E + DK +G+ KG+ ++ AE A+
Sbjct: 9 DTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAAR 68
Query: 220 AALVDPIKTVDGKQLNCRLADN--KKAKPMGPDGGGPGNVS 258
+A VD +DG++ NC LA +++KP P+ GG G ++
Sbjct: 69 SACVDATPVIDGRRANCNLASLGLQRSKPSTPNHGGGGRIN 109
Score = 39 (18.8 bits), Expect = 4.8e-14, Sum P(2) = 4.8e-14
Identities = 15/57 (26%), Positives = 22/57 (38%)
Query: 366 LYRLPPSSAGMPSGGYPEAGHYGLSSTSAGYPSQHHQAAGTSPVPRVPPGGMYPNVP 422
L R PS+ GG +S+ G+ G P P+ P YP++P
Sbjct: 92 LQRSKPSTPNHGGGGRINNMRVMMSTMQTGF--------GPPPPPQPPTFTHYPHLP 140
>TAIR|locus:2164042 [details] [associations]
symbol:AT5G53680 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0006457 "protein folding"
evidence=RCA] [GO:0009408 "response to heat" evidence=RCA]
[GO:0009644 "response to high light intensity" evidence=RCA]
[GO:0042542 "response to hydrogen peroxide" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 EMBL:AB017066
HSSP:Q61474 IPI:IPI00517619 RefSeq:NP_200179.1 UniGene:At.55530
ProteinModelPortal:Q9FI08 SMR:Q9FI08 EnsemblPlants:AT5G53680.1
GeneID:835449 KEGG:ath:AT5G53680 TAIR:At5g53680
HOGENOM:HOG000152479 InParanoid:Q9FI08 PhylomeDB:Q9FI08
ProtClustDB:CLSN2916322 Genevestigator:Q9FI08 Uniprot:Q9FI08
Length = 169
Score = 185 (70.2 bits), Expect = 5.4e-14, P = 5.4e-14
Identities = 35/83 (42%), Positives = 51/83 (61%)
Query: 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAM 126
D T K+++ GL W T EGL + F +GE+ V+ D+ T +S+GYGF+TFK + A
Sbjct: 9 DTTFTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESAT 68
Query: 127 LALKEPSKKIDGRVTVTNLAVAG 149
A K+P+ I+GR+T LA G
Sbjct: 69 RACKDPNPTIEGRITNCKLAFVG 91
Score = 134 (52.2 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 30/88 (34%), Positives = 47/88 (53%)
Query: 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQ 219
D + KI+VG +P + L+ F +GEI + D++T + +G+ +K AE A
Sbjct: 9 DTTFTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESAT 68
Query: 220 AALVDPIKTVDGKQLNCRLAD-NKKAKP 246
A DP T++G+ NC+LA K KP
Sbjct: 69 RACKDPNPTIEGRITNCKLAFVGAKVKP 96
>UNIPROTKB|F1MH29 [details] [associations]
symbol:F1MH29 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:DAAA02006340
IPI:IPI00839326 Ensembl:ENSBTAT00000046159 Uniprot:F1MH29
Length = 241
Score = 185 (70.2 bits), Expect = 5.4e-14, P = 5.4e-14
Identities = 61/208 (29%), Positives = 95/208 (45%)
Query: 61 RSIADADPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF 119
+S + +P Q RKLFI GL ++TT E LRS S + V+ D T S+G+ F+T+
Sbjct: 2 KSWSPKEPGQLRKLFIGGLSFETTDESLRSHCSH----SPSCVMTDPNTKCSRGFRFVTY 57
Query: 120 KHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADK 179
++ A+ K+D RV V+ G S ++++KIF G + D
Sbjct: 58 ATVEEVDAAMNARPHKVDRRVVEPKRGVS-REG-SQRPGAHLTVKKIFAGGIKEDTEERH 115
Query: 180 LLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDG--KQLNCR 237
L +F G+IE + D +GK +GFA + + ++ TV+G ++
Sbjct: 116 LRDYFEKPGKIEVIEIMTDPSSGKKRGFAFVTFDDHDSVDKTVIQKYHTVNGHNRERGRS 175
Query: 238 LADNKKAKPMGPDG-GGPGNVSMNHGDG 264
+ N G DG G GN N G G
Sbjct: 176 GSGNFGGGRGGGDGYNGFGNDGSNFGGG 203
>UNIPROTKB|F1SCM6 [details] [associations]
symbol:LOC100522063 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123185.1 Ensembl:ENSSSCT00000014807 GeneID:100522063
KEGG:ssc:100522063 Uniprot:F1SCM6
Length = 354
Score = 194 (73.4 bits), Expect = 5.9e-14, Sum P(2) = 5.9e-14
Identities = 58/212 (27%), Positives = 95/212 (44%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALK 130
RKLFI GL +T E LR+ + +G+L + VVI D ++ +S+G+GF+ F + A+
Sbjct: 21 RKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAAMA 80
Query: 131 EPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEI 190
IDGRV + V V+ +K+FVG + D + L +F YG I
Sbjct: 81 ARPHSIDGRVVASKRVVPREESGKPG--ACVTTKKLFVGGIKEDTTERHLRDYFERYGTI 138
Query: 191 EEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGK--QLNCRLADN------- 241
+ + +Q+G+ F + + ++ T++G QL L+
Sbjct: 139 DA--IEIIRQSGRKTAFGFVTFDDHDPVDKIVLQKYHTINGHHAQLEKALSRQGMQEVQS 196
Query: 242 ---KKAKPMG----PDGGGPGNVSMNHGDGMG 266
++ + +G P GGG G N G G G
Sbjct: 197 SRRRRGRHVGFGDIPSGGGGGGGGGNFGAGPG 228
Score = 44 (20.5 bits), Expect = 5.9e-14, Sum P(2) = 5.9e-14
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 248 GPDGGGPGNVSMNHGDGMG 266
G G G N+S GDG G
Sbjct: 271 GDRGAGYSNLSSGFGDGYG 289
>UNIPROTKB|J9NZR9 [details] [associations]
symbol:J9NZR9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03000342
Ensembl:ENSCAFT00000001210 OMA:GSKINAN Uniprot:J9NZR9
Length = 269
Score = 185 (70.2 bits), Expect = 7.1e-14, Sum P(2) = 7.1e-14
Identities = 51/203 (25%), Positives = 90/203 (44%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+FIRGL WDT+ + L +GE+ + ++ D TG+S+G+GF+ FK L+
Sbjct: 17 KMFIRGLSWDTSKKDL-----TFGEVVDCIIETDPVTGRSRGFGFVLFKEAASVDKVLEL 71
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
K+D ++ + + P +K+FVG + D +++ + +GEIE
Sbjct: 72 KEHKLD------SMLIDPKRAKALKEPP----KKVFVGGLSPDTYEEQIKEYLGAFGEIE 121
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNK---KAKPMG 248
L D +T + +GF Y + + L + + + ++A+ K + +
Sbjct: 122 NIELPMDTKTNERRGFCFITYTDEKPVKKLLENRYHQIGSGKCEIKVAEPKEIYRQQQQQ 181
Query: 249 PDGG-----GPGNVSMNHGDGMG 266
GG G S HG G G
Sbjct: 182 QKGGRSAAAGERGGSRGHGQGQG 204
Score = 40 (19.1 bits), Expect = 7.1e-14, Sum P(2) = 7.1e-14
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 378 SGGYPEA--GHYGLSSTSAGYPSQHHQ 402
S GY E G+YG A Y +HQ
Sbjct: 237 SYGYTEFNYGNYGYGQGYADYRGGNHQ 263
>UNIPROTKB|F1LZL9 [details] [associations]
symbol:F1LZL9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 EMBL:AC109707 IPI:IPI00780768
Ensembl:ENSRNOT00000045359 Uniprot:F1LZL9
Length = 247
Score = 183 (69.5 bits), Expect = 9.0e-14, P = 9.0e-14
Identities = 58/196 (29%), Positives = 87/196 (44%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
KLFI GL ++TT + RS F G L + VV D T +S+G+GF+T+ ++ A+
Sbjct: 1 KLFIGGLSFETTYKNRRSHFEQRGTLTDCVVRRDPNTKRSRGFGFVTYATVEEVDAAMNA 60
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
K+D RV N AV+ S R FV + D L ++ YG+IE
Sbjct: 61 RPHKVDARVVEPNRAVSRED----------SQRPGFVCGIKEDTEEHHLQNNYEQYGQIE 110
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKPMGPDG 251
+ D+ GK + FA + + + L V G R A +K++ G
Sbjct: 111 VIEIMTDRGLGKKRDFAFVTFHDHDLDEIVL-QKYHNVHGYNCEVRKALSKQSPDYSGGG 169
Query: 252 GGPGNVSMNHG-DGMG 266
G G+ N+G G G
Sbjct: 170 RGYGSGGQNYGKQGSG 185
>UNIPROTKB|F1NBY1 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0043922
"negative regulation by host of viral transcription" evidence=IEA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0003690 GO:GO:0070935
IPI:IPI00596633 OMA:QFFSQYG GeneTree:ENSGT00570000079202
EMBL:AADN02040753 PRIDE:F1NBY1 Ensembl:ENSGALT00000004585
Uniprot:F1NBY1
Length = 414
Score = 193 (73.0 bits), Expect = 9.7e-14, Sum P(3) = 9.7e-14
Identities = 64/200 (32%), Positives = 94/200 (47%)
Query: 73 LFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEP 132
L + GL W TT + L+ FS +GE+ V D TG SKG+GF+ F + + + +
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTDYETQVKVMSQ- 164
Query: 133 SKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEE 192
IDGR L NS S + P+ RK+FVG DM+AD+L FA YGE+
Sbjct: 165 RHMIDGRWCDCKLP---NSKQSPDEPL--RSRKVFVGRCTEDMTADELQQFFAQYGEV-- 217
Query: 193 GPLGFDKQTGKP-KGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLAD-----NKKAKP 246
D KP + FA + + AQ+ + + + G ++ A+ N++ +
Sbjct: 218 ----VDVFIPKPFRAFAFVTFADDQVAQSLCGEDL-IIKGISVHISNAEPKHNSNRQLER 272
Query: 247 MGPDGGGPGNVSMNHGDGMG 266
G GG PG N G G G
Sbjct: 273 GGRFGGNPGGFG-NQG-GFG 290
Score = 40 (19.1 bits), Expect = 9.7e-14, Sum P(3) = 9.7e-14
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 248 GPDGGGPGNVSMNHGDGMG 266
G GG G + N G MG
Sbjct: 290 GNSRGGGGGLGNNQGSNMG 308
Score = 39 (18.8 bits), Expect = 9.7e-14, Sum P(3) = 9.7e-14
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 371 PSSAGMPSGGYPEAGHYGLSSTSAGYPSQHHQAA 404
PS P G + G SS + Y + AA
Sbjct: 349 PSGNNQPQGNMQREQNQGFSSGNNSYGGSNSGAA 382
>UNIPROTKB|Q5ZLN5 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
EMBL:AJ719699 IPI:IPI00596633 RefSeq:NP_001026049.1
UniGene:Gga.16753 HSSP:Q13148 ProteinModelPortal:Q5ZLN5 SMR:Q5ZLN5
STRING:Q5ZLN5 PRIDE:Q5ZLN5 GeneID:419453 KEGG:gga:419453 CTD:23435
eggNOG:NOG145464 HOGENOM:HOG000254792 HOVERGEN:HBG058671
InParanoid:Q5ZLN5 OrthoDB:EOG447FTT NextBio:20822507 Uniprot:Q5ZLN5
Length = 414
Score = 193 (73.0 bits), Expect = 9.7e-14, Sum P(3) = 9.7e-14
Identities = 64/200 (32%), Positives = 94/200 (47%)
Query: 73 LFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEP 132
L + GL W TT + L+ FS +GE+ V D TG SKG+GF+ F + + + +
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTDYETQVKVMSQ- 164
Query: 133 SKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEE 192
IDGR L NS S + P+ RK+FVG DM+AD+L FA YGE+
Sbjct: 165 RHMIDGRWCDCKLP---NSKQSPDEPL--RSRKVFVGRCTEDMTADELQQFFAQYGEV-- 217
Query: 193 GPLGFDKQTGKP-KGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLAD-----NKKAKP 246
D KP + FA + + AQ+ + + + G ++ A+ N++ +
Sbjct: 218 ----VDVFIPKPFRAFAFVTFADDQVAQSLCGEDL-IIKGISVHISNAEPKHNSNRQLER 272
Query: 247 MGPDGGGPGNVSMNHGDGMG 266
G GG PG N G G G
Sbjct: 273 GGRFGGNPGGFG-NQG-GFG 290
Score = 40 (19.1 bits), Expect = 9.7e-14, Sum P(3) = 9.7e-14
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 248 GPDGGGPGNVSMNHGDGMG 266
G GG G + N G MG
Sbjct: 290 GNSRGGGGGLGNNQGSNMG 308
Score = 39 (18.8 bits), Expect = 9.7e-14, Sum P(3) = 9.7e-14
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 371 PSSAGMPSGGYPEAGHYGLSSTSAGYPSQHHQAA 404
PS P G + G SS + Y + AA
Sbjct: 349 PSGNNQPQGNMQREQNQGFSSGNNSYGGSNSGAA 382
>UNIPROTKB|F1PQB0 [details] [associations]
symbol:HNRNPA1L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:AAEX03003034 Ensembl:ENSCAFT00000027199 Uniprot:F1PQB0
Length = 314
Score = 197 (74.4 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 64/211 (30%), Positives = 98/211 (46%)
Query: 61 RSIADADPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF 119
+S + +P Q +KLFIRGL ++ T E LR+ F +G L + VV+ D T S+G+G
Sbjct: 3 KSESPKEPEQLQKLFIRGLSFEITDESLRTHFEQWGTLTDYVVMRDPNTKCSRGFG--AM 60
Query: 120 KHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADK 179
+ +D AM + P K + RV AV+ +S V ++++KIFVG + D
Sbjct: 61 EEVDAAMNS--RPCK-VGRRVLEPKRAVSQE--DSPRPGVLLTVKKIFVGGIKEDTEEHH 115
Query: 180 LLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCR-- 237
L +F YG+IE D+ +GK +GFA + + ++ +G R
Sbjct: 116 LRDYFEQYGKIEVIESMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHAANGHNRVVRKT 175
Query: 238 LADNKKAKPMGPDGG--GPGNVSMNHGDGMG 266
L + A G G GN G G G
Sbjct: 176 LWKQEMASASSSQRGRSGSGNFGGGCGGGFG 206
Score = 112 (44.5 bits), Expect = 0.00096, P = 0.00096
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 56 VLESVRSIADAD-P------TQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKAT 108
VLE R+++ D P T +K+F+ G+ DT LR F YG++E + D+ +
Sbjct: 78 VLEPKRAVSQEDSPRPGVLLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIESMTDRGS 137
Query: 109 GKSKGYGFITFKHID 123
GK +G+ F+TF D
Sbjct: 138 GKKRGFAFVTFDDHD 152
>WB|WBGene00006321 [details] [associations]
symbol:sup-12 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0040012 "regulation of locomotion" evidence=IGI] [GO:0032956
"regulation of actin cytoskeleton organization" evidence=IGI]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0036002 "pre-mRNA
binding" evidence=IPI] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0097157 "pre-mRNA
intronic binding" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0040012 GO:GO:0030529 GO:GO:0032956 GO:GO:0097157
GO:GO:0000380 HSSP:P09651 HOGENOM:HOG000276232
GeneTree:ENSGT00390000002308 EMBL:FO081409 GeneID:180674
KEGG:cel:CELE_T22B2.4 CTD:180674 PIR:T33034 RefSeq:NP_508674.1
ProteinModelPortal:O45189 SMR:O45189 DIP:DIP-24970N IntAct:O45189
MINT:MINT-1047167 STRING:O45189 EnsemblMetazoa:T22B2.4a
UCSC:T22B2.4 WormBase:T22B2.4a InParanoid:O45189 OMA:DRNTQKS
NextBio:910400 ArrayExpress:O45189 Uniprot:O45189
Length = 248
Score = 182 (69.1 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 43/110 (39%), Positives = 63/110 (57%)
Query: 40 DQLLDVLSSAVARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEE 99
D L+ ++A+A+ + E V + D K+F+ GL + T+ + L F +G++EE
Sbjct: 7 DPLVHAAAAALAQSTNA-EPV--VGSRDTMFTKIFVGGLPYHTSDKTLHEYFEQFGDIEE 63
Query: 100 AVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLAVAG 149
AVVI D+ T KS+GYGF+T K A A K+P+ IDGR NLA G
Sbjct: 64 AVVITDRNTQKSRGYGFVTMKDRASAERACKDPNPIIDGRKANVNLAYLG 113
Score = 132 (51.5 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 38/106 (35%), Positives = 50/106 (47%)
Query: 146 AVAGNSGNSTN-NPV----DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQ 200
A A STN PV D KIFVG +P S L +F +G+IEE + D+
Sbjct: 12 AAAAALAQSTNAEPVVGSRDTMFTKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRN 71
Query: 201 TGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKP 246
T K +G+ K A+ A DP +DG++ N LA AKP
Sbjct: 72 TQKSRGYGFVTMKDRASAERACKDPNPIIDGRKANVNLA-YLGAKP 116
>UNIPROTKB|O45189 [details] [associations]
symbol:sup-12 "Protein SUP-12, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0040012 GO:GO:0030529 GO:GO:0032956
GO:GO:0097157 GO:GO:0000380 HSSP:P09651 HOGENOM:HOG000276232
GeneTree:ENSGT00390000002308 EMBL:FO081409 GeneID:180674
KEGG:cel:CELE_T22B2.4 CTD:180674 PIR:T33034 RefSeq:NP_508674.1
ProteinModelPortal:O45189 SMR:O45189 DIP:DIP-24970N IntAct:O45189
MINT:MINT-1047167 STRING:O45189 EnsemblMetazoa:T22B2.4a
UCSC:T22B2.4 WormBase:T22B2.4a InParanoid:O45189 OMA:DRNTQKS
NextBio:910400 ArrayExpress:O45189 Uniprot:O45189
Length = 248
Score = 182 (69.1 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 43/110 (39%), Positives = 63/110 (57%)
Query: 40 DQLLDVLSSAVARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEE 99
D L+ ++A+A+ + E V + D K+F+ GL + T+ + L F +G++EE
Sbjct: 7 DPLVHAAAAALAQSTNA-EPV--VGSRDTMFTKIFVGGLPYHTSDKTLHEYFEQFGDIEE 63
Query: 100 AVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLAVAG 149
AVVI D+ T KS+GYGF+T K A A K+P+ IDGR NLA G
Sbjct: 64 AVVITDRNTQKSRGYGFVTMKDRASAERACKDPNPIIDGRKANVNLAYLG 113
Score = 132 (51.5 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 38/106 (35%), Positives = 50/106 (47%)
Query: 146 AVAGNSGNSTN-NPV----DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQ 200
A A STN PV D KIFVG +P S L +F +G+IEE + D+
Sbjct: 12 AAAAALAQSTNAEPVVGSRDTMFTKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRN 71
Query: 201 TGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKP 246
T K +G+ K A+ A DP +DG++ N LA AKP
Sbjct: 72 TQKSRGYGFVTMKDRASAERACKDPNPIIDGRKANVNLA-YLGAKP 116
>TAIR|locus:2164082 [details] [associations]
symbol:AT5G53720 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:AB017066
HSSP:Q61474 IPI:IPI00526229 RefSeq:NP_200183.1 UniGene:At.55532
ProteinModelPortal:Q9FI04 SMR:Q9FI04 EnsemblPlants:AT5G53720.1
GeneID:835453 KEGG:ath:AT5G53720 TAIR:At5g53720 eggNOG:NOG297705
InParanoid:Q9FI04 OMA:ATRACEN PhylomeDB:Q9FI04
ProtClustDB:CLSN2916326 Genevestigator:Q9FI04 Uniprot:Q9FI04
Length = 100
Score = 182 (69.1 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 35/80 (43%), Positives = 50/80 (62%)
Query: 70 QRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLAL 129
+ K+++ GL W T TEGL S F +GE+ A V+ D AT +SKG+GF+TF+ ++ A A
Sbjct: 8 ETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRAC 67
Query: 130 KEPSKKIDGRVTVTNLAVAG 149
+ P+ IDGR LA G
Sbjct: 68 ENPNHTIDGRTVNCKLAYLG 87
Score = 121 (47.7 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 165 KIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVD 224
KI+V +P + L+++F +GEI + D T + KGF ++ E A A +
Sbjct: 10 KIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACEN 69
Query: 225 PIKTVDGKQLNCRLA 239
P T+DG+ +NC+LA
Sbjct: 70 PNHTIDGRTVNCKLA 84
>UNIPROTKB|I3L7S7 [details] [associations]
symbol:LOC100621383 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00570000079202 Ensembl:ENSSSCT00000025708
Uniprot:I3L7S7
Length = 275
Score = 192 (72.6 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 63/200 (31%), Positives = 93/200 (46%)
Query: 73 LFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEP 132
L + GL W TT + L+ FS +GE+ V D TG SKG+GF+ F + + + +
Sbjct: 39 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQ- 97
Query: 133 SKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEE 192
IDGR L NS S + P+ RK+FVG DM+AD+L F YGE+
Sbjct: 98 RHMIDGRWCDCKLP---NSKQSPDEPL--RSRKVFVGRCTEDMTADELQQFFCQYGEV-- 150
Query: 193 GPLGFDKQTGKP-KGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLAD-----NKKAKP 246
D KP + FA + + AQ+ + + + G ++ A+ N++ +
Sbjct: 151 ----VDVFIPKPFRAFAFVTFADDQVAQSLCGEDL-IIKGISVHISNAEPKHNSNRQLER 205
Query: 247 MGPDGGGPGNVSMNHGDGMG 266
G GG PG N G G G
Sbjct: 206 SGRFGGNPGGFG-NQG-GFG 223
>UNIPROTKB|F8W646 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022306
ProteinModelPortal:F8W646 SMR:F8W646 PRIDE:F8W646
Ensembl:ENST00000547708 ArrayExpress:F8W646 Bgee:F8W646
Uniprot:F8W646
Length = 156
Score = 181 (68.8 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 42/110 (38%), Positives = 65/110 (59%)
Query: 61 RSIADADPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF 119
+S + +P Q RKLFI GL ++TT E LRS F +G L + VV+ D T +S+G+GF+T+
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 120 KHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVG 169
++ A+ K+DGRV AV+ +S ++++KIFVG
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSRE--DSQRPGAHLTVKKIFVG 110
>UNIPROTKB|F1SCL3 [details] [associations]
symbol:LOC100522980 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123190.1 Ensembl:ENSSSCT00000014811 GeneID:100522980
KEGG:ssc:100522980 Uniprot:F1SCL3
Length = 354
Score = 190 (71.9 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 56/212 (26%), Positives = 93/212 (43%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALK 130
RKLFI GL +T E LR+ + +G+L + VVI D ++ +S+G+GF+ F + A+
Sbjct: 21 RKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAAMA 80
Query: 131 EPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEI 190
IDGRV + V V+ +K+FVG + D + L +F YG I
Sbjct: 81 ARPHSIDGRVVASKRVVPREESGKPG--ACVTTKKLFVGGIKEDTTERHLRDYFERYGTI 138
Query: 191 EEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNK-------- 242
+ + +Q+G+ F + + ++ T++G A ++
Sbjct: 139 DA--IEIIRQSGRKTAFGFVTFDDHDPVDKIVLQKYHTINGHHAQLEKALSRQGMQEVQS 196
Query: 243 ----KAKPMG----PDGGGPGNVSMNHGDGMG 266
+ + +G P GGG G N G G G
Sbjct: 197 SRRGRGRHVGFGDIPSGGGGGGGGGNFGAGPG 228
Score = 44 (20.5 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 248 GPDGGGPGNVSMNHGDGMG 266
G G G N+S GDG G
Sbjct: 271 GDRGAGYSNLSSGFGDGYG 289
>DICTYBASE|DDB_G0290307 [details] [associations]
symbol:DDB_G0290307 "ELAVL1-like protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0290307 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000162 eggNOG:NOG256997 RefSeq:XP_635793.1
ProteinModelPortal:Q54G90 EnsemblProtists:DDB0233651 GeneID:8627598
KEGG:ddi:DDB_G0290307 InParanoid:Q54G90 OMA:SATNQCK Uniprot:Q54G90
Length = 459
Score = 149 (57.5 bits), Expect = 1.9e-13, Sum P(3) = 1.9e-13
Identities = 32/86 (37%), Positives = 52/86 (60%)
Query: 73 LFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEP 132
LFI L T++ LRSIFSA+GE++ V++D TG S+G+GF+ FK + A A+
Sbjct: 101 LFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVASAQYAINSM 160
Query: 133 S-KKIDGRVTVTNLAVAGNSGNSTNN 157
+ K++ + + A + + N+TNN
Sbjct: 161 NGAKVENKTLLVRFANSDPNSNNTNN 186
Score = 93 (37.8 bits), Expect = 1.9e-13, Sum P(3) = 1.9e-13
Identities = 29/105 (27%), Positives = 48/105 (45%)
Query: 150 NSGNSTNNPVDVSL--RKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGF 207
NS N+ N +D +F+ +P + ++L F+ YGE+ E L D T +G
Sbjct: 203 NSNNNNTNNIDEQKISNNVFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQ 262
Query: 208 ALFVYKTAEGAQAALVDPIKTVDG-------KQLNCRLADNKKAK 245
L Y + A ++ +K+++G K L R ADN+ K
Sbjct: 263 GLVRYIDTQSA----INAVKSLNGFILQDPEKPLIVRFADNEDEK 303
Score = 41 (19.5 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 17/72 (23%), Positives = 32/72 (44%)
Query: 166 IFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP 225
++V N+P+D L F+ G I + D+ T +G+ FV + + ++
Sbjct: 384 LYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRGYG-FVRMVSLADSYSAINS 442
Query: 226 IKTVD--GKQLN 235
I V GK ++
Sbjct: 443 INGVQVGGKTIS 454
Score = 40 (19.1 bits), Expect = 1.9e-13, Sum P(3) = 1.9e-13
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 405 GTSPVPRVPPGGMYPNVPP 423
G+S P PPGG P P
Sbjct: 365 GSSSQP--PPGGKNPGTDP 381
>UNIPROTKB|D4ABW2 [details] [associations]
symbol:D4ABW2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00781059 ProteinModelPortal:D4ABW2
Ensembl:ENSRNOT00000044642 Uniprot:D4ABW2
Length = 279
Score = 184 (69.8 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 60/212 (28%), Positives = 98/212 (46%)
Query: 61 RSIADADPTQ-RKLFIRGLGWDTTTEGLR--SIFSAYGELEEAVVILDKATGKSKGYGFI 117
+S + +P Q +KLF+ GL ++ T E L S F +G L + VV+ D T +S+G+GF+
Sbjct: 3 KSESSKEPEQLQKLFVGGLSFEATLESLSLTSHFEQWGTLTDHVVMRDPNTKRSRGFGFV 62
Query: 118 TFKHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSA 177
T+ ++ A+ K+ GR A S +S ++++KIFVG V D
Sbjct: 63 TYATVEEVDAAMNARPHKVGGRAVEPKRA---GSKDSQRPGAHLTMKKIFVGGVKEDTEE 119
Query: 178 DKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCR 237
+L + G+ E + D+ +GK + FA + + ++ TV+G R
Sbjct: 120 HRLRDYLEQNGKTEVTEITTDRGSGK-RDFAFVTFDNS--VDKIVIQKYSTVNGHNCEVR 176
Query: 238 LADNKK--AKPMGPDGGGPGNVSMNHG-DGMG 266
A +K+ A G G S N G G G
Sbjct: 177 KALSKQEMASASSSQRGRSG--SRNFGYKGFG 206
Score = 40 (19.1 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 379 GGYPEAGHYGLSSTSAGYPSQHHQAAGTSPVPRVPPG 415
G Y + G+Y + S++ G P + G P V G
Sbjct: 216 GSYNDFGNYNIQSSNFG-PMKGGNFGGGGSGPYVGGG 251
>UNIPROTKB|F1SHL4 [details] [associations]
symbol:F1SHL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU468866 Ensembl:ENSSSCT00000002164 OMA:QYGTIVE Uniprot:F1SHL4
Length = 280
Score = 190 (71.9 bits), Expect = 3.3e-13, P = 3.3e-13
Identities = 55/198 (27%), Positives = 91/198 (45%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+F+ L W + L++ F+ +GE+ + + +D TG+S+G+GF+ K L +
Sbjct: 73 KMFVGDLSWSNRKKDLKNYFTKFGEVIDCTIKMDPNTGRSRGFGFVLIKDAASVEKILDQ 132
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
+++G V A N+PV +KIFVG P ++ F +GEIE
Sbjct: 133 KEHRLNGDVIDPEKAKV-----MKNDPV----KKIFVGLNPEATEKNR---DFGEFGEIE 180
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEG-AQAALVDPIKTVDGKQLNCRLADNKKAKPMGPD 250
L D ++ K +GF +K E + L T+ G++ ++A K+
Sbjct: 181 AIELPMDPKSNKRRGFVFITFKEEEEPVKKVLEKKFHTISGRKCEIKVAQPKEDYQQQQC 240
Query: 251 G-GGPGNVSM-NHGDGMG 266
G GG GN + N G G G
Sbjct: 241 GSGGRGNRNGGNRGSGSG 258
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 156 (60.0 bits), Expect = 3.8e-13, Sum P(2) = 3.8e-13
Identities = 31/82 (37%), Positives = 52/82 (63%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
+ F+ GL W T E L+ FS +G++ ++ +I D+ +G+S+G+GF+TFK A++E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 132 PS-KKIDGRVTVTNLAVAGNSG 152
+ K++DGRV N A + SG
Sbjct: 67 MNGKELDGRVITVNEAQSRGSG 88
Score = 104 (41.7 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 24/91 (26%), Positives = 50/91 (54%)
Query: 165 KIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVD 224
+ FVG + + + L F+ +G++ + + D+++G+ +GF +K + A+ D
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRD 62
Query: 225 PIKTVDGKQLNCRLADNKKAKPMGPDGGGPG 255
I+ ++GK+L+ R+ +A+ G GGG G
Sbjct: 63 AIEEMNGKELDGRVITVNEAQSRGSGGGGGG 93
Score = 41 (19.5 bits), Expect = 3.8e-13, Sum P(2) = 3.8e-13
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 374 AGMPSGGYPEAGHYGLSSTSAGYPS 398
+G GGY G G S GY S
Sbjct: 110 SGGGGGGYSGGGGGGYERRSGGYGS 134
>UNIPROTKB|G3MYU0 [details] [associations]
symbol:G3MYU0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02005585
Ensembl:ENSBTAT00000064368 Uniprot:G3MYU0
Length = 256
Score = 184 (69.8 bits), Expect = 4.2e-13, P = 4.2e-13
Identities = 62/216 (28%), Positives = 99/216 (45%)
Query: 61 RSIADADPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF 119
+S + P + RKLFIRGL ++T E L S F G+ VV+ T S+G+GF+T
Sbjct: 15 KSESSKSPEELRKLFIRGLSFETIDESLSSHFEM-GKAHRLVVMRVPNTKHSRGFGFVT- 72
Query: 120 KHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADK 179
K ++ A+ K+D RV V+ G+S ++++KIFVG +
Sbjct: 73 KPWWRSLAAMNARPHKVDERVVEPKRDVS--RGDSQRPHAHLTVKKIFVGGIQEGTEEHH 130
Query: 180 LLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCR-- 237
L +F YG+I+ + D+ + K +GFA + + ++ TV+G R
Sbjct: 131 LRNNFEQYGKIDI-EIMTDRGSDKKRGFAFETFDDHDSVDKIVIQKYHTVNGHNCEVREA 189
Query: 238 -------LADNKKAKPMGPDGGGPGNVSMNHGDGMG 266
A ++K + G G G GN +G G G
Sbjct: 190 LSKQEMASASSRKHRGYGSGGQGYGNQGSGYG-GSG 224
>UNIPROTKB|F1LRH1 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:628778 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005844 GeneTree:ENSGT00700000104255
IPI:IPI00202463 Ensembl:ENSRNOT00000001532 ArrayExpress:F1LRH1
Uniprot:F1LRH1
Length = 329
Score = 193 (73.0 bits), Expect = 4.6e-13, P = 4.6e-13
Identities = 47/175 (26%), Positives = 91/175 (52%)
Query: 85 EGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTN 144
EGLR F +GE++E +V+ D T +S+G+GF+TF G L + ++D +
Sbjct: 1 EGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 60
Query: 145 LAVAGNSGNSTNNPVDVS-LRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGK 203
+A + P V+ +KIFVG + + + + + +F +G++++ L FDK T +
Sbjct: 61 VAFPRRA-----QPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNR 115
Query: 204 PKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKP---MGPDGGGPG 255
+GF +++ + +V+ + + ++N ++ + KKA+P M P G G
Sbjct: 116 HRGFGFVTFESED-----IVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGSARG 165
Score = 123 (48.4 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 19/53 (35%), Positives = 38/53 (71%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHID 123
+K+F+ GL +TT E ++ F +G++++A+++ DK T + +G+GF+TF+ D
Sbjct: 76 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 128
>WB|WBGene00019249 [details] [associations]
symbol:H28G03.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000002308 EMBL:FO081568 RefSeq:NP_741783.1
UniGene:Cel.17692 ProteinModelPortal:H2L0D0 SMR:H2L0D0 PRIDE:H2L0D0
EnsemblMetazoa:H28G03.1a.1 EnsemblMetazoa:H28G03.1a.2 GeneID:180791
KEGG:cel:CELE_H28G03.1 CTD:180791 WormBase:H28G03.1a OMA:HIVNERK
Uniprot:H2L0D0
Length = 336
Score = 193 (73.0 bits), Expect = 5.0e-13, P = 5.0e-13
Identities = 51/164 (31%), Positives = 82/164 (50%)
Query: 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDG 124
D+ P RKLFI GL DTT E L + FS +G + +A+VI D T S+G+GF+TF I
Sbjct: 64 DSPPQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFS 123
Query: 125 AMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNP----VDVSLR-KIFVGNVPNDM-SAD 178
A A+ + K+ G+ + A+ +S P D + K+ + + N + S D
Sbjct: 124 AESAMNDRPHKLGGKTVDSKRAIPREQMSSMIPPPFFETDPAPGCKLLLNGITNGVHSVD 183
Query: 179 KLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAAL 222
L +F +G +++ + G+P+G +Y+ E A L
Sbjct: 184 SLRVYFETFGTLDQVEI-----LGQPRGLGFVIYEDKESADRCL 222
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 174 (66.3 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 35/81 (43%), Positives = 52/81 (64%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
KLF+ GL W T L+ F+++GE+ EA VI D+ TG+S+G+GF++F D A A+KE
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 132 -PSKKIDGRVTVTNLAVAGNS 151
K+++GR NLA +S
Sbjct: 96 MDGKELNGRQIRVNLATERSS 116
Score = 121 (47.7 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 33/110 (30%), Positives = 53/110 (48%)
Query: 154 STNNPVDV---SLR----KIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKG 206
S+N PV SLR K+FVG + L F +GE+ E + D++TG+ +G
Sbjct: 18 SSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRG 77
Query: 207 FALFVYKTAEGAQAALVDPI-KTVDGKQLNCRLADNKKAKPMGPDGGGPG 255
F + + A A+ + K ++G+Q+ LA + + P GGG G
Sbjct: 78 FGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERSSAPRSSFGGGGG 127
>TAIR|locus:2102435 [details] [associations]
symbol:ARP1 "ABA-regulated RNA-binding protein 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0009414 "response to water deprivation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0010029
"regulation of seed germination" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0005634 EMBL:CP002686 GO:GO:0000166
GO:GO:0009651 GO:GO:0009414 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0010029 EMBL:AL138650 HSSP:P11940 IPI:IPI00531276 PIR:T47636
RefSeq:NP_191037.1 UniGene:At.20812 ProteinModelPortal:Q9M1S3
SMR:Q9M1S3 DNASU:824642 EnsemblPlants:AT3G54770.1 GeneID:824642
KEGG:ath:AT3G54770 TAIR:At3g54770 InParanoid:Q9M1S3 OMA:FYHFHQS
PhylomeDB:Q9M1S3 ProtClustDB:CLSN2685114 Genevestigator:Q9M1S3
Uniprot:Q9M1S3
Length = 261
Score = 175 (66.7 bits), Expect = 9.8e-13, Sum P(2) = 9.8e-13
Identities = 40/96 (41%), Positives = 53/96 (55%)
Query: 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAM 126
D K+F+ GL WDT E + F YG++ EAV+I DK T +SKGYGF+TFK A
Sbjct: 13 DTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAAT 72
Query: 127 LALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVS 162
A ++ + I+GR NLA G G +P S
Sbjct: 73 RACEDSTPIINGRRANCNLASLG--GRLRKSPTMTS 106
Score = 138 (53.6 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 35/111 (31%), Positives = 53/111 (47%)
Query: 151 SGNSTNNPV-DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFAL 209
+ N+ N D L K+FVG + D + + HF YG+I E + DK T + KG+
Sbjct: 3 TSNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGF 62
Query: 210 FVYKTAEGAQAALVDPIKTVDGKQLNCRLADN----KKAKPMGPDGGGPGN 256
+K A+ A A D ++G++ NC LA +K+ M GP N
Sbjct: 63 VTFKDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQGPKN 113
Score = 42 (19.8 bits), Expect = 9.8e-13, Sum P(2) = 9.8e-13
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 382 PEAGHYGLSSTSAGYPSQHHQAAGTSPVP--RVPPGGMYPNV 421
P G++ +G+ +Q HQ VP P + PN+
Sbjct: 120 PHVGNHSQWYYPSGFTNQQHQQQNHQAVPFYGYPSAYVAPNM 161
>UNIPROTKB|I3LPG0 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:FP690339 Ensembl:ENSSSCT00000027694 Uniprot:I3LPG0
Length = 332
Score = 190 (71.9 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 47/175 (26%), Positives = 90/175 (51%)
Query: 85 EGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTN 144
EGLR F +GE +E +V+ D T +S+G+GF+TF G L + ++D +
Sbjct: 1 EGLREYFGQFGEEKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 60
Query: 145 LAVAGNSGNSTNNPVDVS-LRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGK 203
+A + P V+ +KIFVG + + + + + +F +G++++ L FDK T +
Sbjct: 61 VAFPRRA-----QPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNR 115
Query: 204 PKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKP---MGPDGGGPG 255
+GF +++ + +V+ + + ++N ++ + KKA+P M P G G
Sbjct: 116 HRGFGFVTFESED-----IVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGSARG 165
Score = 124 (48.7 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 19/53 (35%), Positives = 38/53 (71%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHID 123
+K+F+ GL +TT E ++ F +G++++A+++ DK T + +G+GF+TF+ D
Sbjct: 76 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 128
>UNIPROTKB|I3LNA4 [details] [associations]
symbol:LOC100621383 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00570000079202 OMA:PSISRIF EMBL:CU694468
Ensembl:ENSSSCT00000022360 Uniprot:I3LNA4
Length = 413
Score = 192 (72.6 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 63/200 (31%), Positives = 93/200 (46%)
Query: 73 LFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEP 132
L + GL W TT + L+ FS +GE+ V D TG SKG+GF+ F + + + +
Sbjct: 105 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQ- 163
Query: 133 SKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEE 192
IDGR L NS S + P+ RK+FVG DM+AD+L F YGE+
Sbjct: 164 RHMIDGRWCDCKLP---NSKQSPDEPL--RSRKVFVGRCTEDMTADELQQFFCQYGEV-- 216
Query: 193 GPLGFDKQTGKP-KGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLAD-----NKKAKP 246
D KP + FA + + AQ+ + + + G ++ A+ N++ +
Sbjct: 217 ----VDVFIPKPFRAFAFVTFADDQVAQSLCGEDL-IIKGISVHISNAEPKHNSNRQLER 271
Query: 247 MGPDGGGPGNVSMNHGDGMG 266
G GG PG N G G G
Sbjct: 272 SGRFGGNPGGFG-NQG-GFG 289
>UNIPROTKB|G3MX91 [details] [associations]
symbol:TARDBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043922 "negative regulation by host of viral
transcription" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0003690 "double-stranded DNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0003690
GO:GO:0043922 GO:GO:0070935 CTD:23435 OMA:QFFSQYG
GeneTree:ENSGT00570000079202 EMBL:DAAA02042967 EMBL:DAAA02042968
RefSeq:NP_001039950.2 UniGene:Bt.106561 Ensembl:ENSBTAT00000065252
GeneID:540632 KEGG:bta:540632 NextBio:20878740 Uniprot:G3MX91
Length = 414
Score = 192 (72.6 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 63/200 (31%), Positives = 93/200 (46%)
Query: 73 LFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEP 132
L + GL W TT + L+ FS +GE+ V D TG SKG+GF+ F + + + +
Sbjct: 106 LIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQ- 164
Query: 133 SKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEE 192
IDGR L NS S + P+ RK+FVG DM+AD+L F YGE+
Sbjct: 165 RHMIDGRWCDCKLP---NSKQSPDEPL--RSRKVFVGRCTEDMTADELRQFFCQYGEV-- 217
Query: 193 GPLGFDKQTGKP-KGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLAD-----NKKAKP 246
D KP + FA + + AQ+ + + + G ++ A+ N++ +
Sbjct: 218 ----VDVFIPKPFRAFAFVTFADDQVAQSLCGEDL-IIKGISVHISNAEPKHNSNRQLER 272
Query: 247 MGPDGGGPGNVSMNHGDGMG 266
G GG PG N G G G
Sbjct: 273 SGRFGGNPGGFG-NQG-GFG 290
WARNING: HSPs involving 728 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.134 0.391 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 425 349 0.00099 116 3 11 23 0.47 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 978
No. of states in DFA: 600 (64 KB)
Total size of DFA: 206 KB (2114 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 31.45u 0.11s 31.56t Elapsed: 00:00:02
Total cpu time: 31.48u 0.11s 31.59t Elapsed: 00:00:02
Start: Tue May 21 09:09:26 2013 End: Tue May 21 09:09:28 2013
WARNINGS ISSUED: 2