BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014397
(425 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A5A6H4|ROA1_PANTR Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes
GN=HNRNPA1 PE=2 SV=1
Length = 320
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 98/185 (52%), Gaps = 5/185 (2%)
Query: 61 RSIADADPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF 119
+S + +P Q RKLFI GL ++TT E LRS F +G L + VV+ D T +S+G+GF+T+
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 120 KHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNP-VDVSLRKIFVGNVPNDMSAD 178
++ A+ K+DGRV AV S + P ++++KIFVG + D
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAV---SREDSQRPGAHLTVKKIFVGGIKEDTEEH 119
Query: 179 KLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRL 238
L +F YG+IE + D+ +GK +GFA + + ++ TV+G R
Sbjct: 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 179
Query: 239 ADNKK 243
A +K+
Sbjct: 180 ALSKQ 184
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus
GN=Hnrnpa1 PE=1 SV=2
Length = 320
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 98/185 (52%), Gaps = 5/185 (2%)
Query: 61 RSIADADPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF 119
+S + +P Q RKLFI GL ++TT E LRS F +G L + VV+ D T +S+G+GF+T+
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 120 KHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNP-VDVSLRKIFVGNVPNDMSAD 178
++ A+ K+DGRV AV S + P ++++KIFVG + D
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAV---SREDSQRPGAHLTVKKIFVGGIKEDTEEH 119
Query: 179 KLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRL 238
L +F YG+IE + D+ +GK +GFA + + ++ TV+G R
Sbjct: 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 179
Query: 239 ADNKK 243
A +K+
Sbjct: 180 ALSKQ 184
>sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1
PE=1 SV=2
Length = 320
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 98/185 (52%), Gaps = 5/185 (2%)
Query: 61 RSIADADPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF 119
+S + +P Q RKLFI GL ++TT E LRS F +G L + VV+ D T +S+G+GF+T+
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 120 KHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNP-VDVSLRKIFVGNVPNDMSAD 178
++ A+ K+DGRV AV S + P ++++KIFVG + D
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAV---SREDSQRPGAHLTVKKIFVGGIKEDTEEH 119
Query: 179 KLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRL 238
L +F YG+IE + D+ +GK +GFA + + ++ TV+G R
Sbjct: 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 179
Query: 239 ADNKK 243
A +K+
Sbjct: 180 ALSKQ 184
>sp|Q32P51|RA1L2_HUMAN Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens
GN=HNRNPA1L2 PE=2 SV=2
Length = 320
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 94/181 (51%), Gaps = 5/181 (2%)
Query: 61 RSIADADPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF 119
+S + +P Q RKLFI GL ++TT E LRS F +G L + VV+ D T +S+G+GF+T+
Sbjct: 3 KSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 120 KHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNP-VDVSLRKIFVGNVPNDMSAD 178
++ A+ K+DGRV AV S + P ++++KIFVG + D
Sbjct: 63 ATVEEVDAAMNTTPHKVDGRVVEPKRAV---SREDSQRPGAHLTVKKIFVGGIKEDTEEH 119
Query: 179 KLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRL 238
L +F YG+IE + D+ +GK +GFA + + ++ TV G R
Sbjct: 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRK 179
Query: 239 A 239
A
Sbjct: 180 A 180
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens
GN=HNRNPA1 PE=1 SV=5
Length = 372
Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 95/179 (53%), Gaps = 5/179 (2%)
Query: 67 DPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGA 125
+P Q RKLFI GL ++TT E LRS F +G L + VV+ D T +S+G+GF+T+ ++
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
Query: 126 MLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNP-VDVSLRKIFVGNVPNDMSADKLLAHF 184
A+ K+DGRV AV S + P ++++KIFVG + D L +F
Sbjct: 69 DAAMNARPHKVDGRVVEPKRAV---SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
Query: 185 ACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKK 243
YG+IE + D+ +GK +GFA + + ++ TV+G R A +K+
Sbjct: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQ 184
>sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta
GN=HNRNPA1 PE=2 SV=3
Length = 320
Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 97/185 (52%), Gaps = 5/185 (2%)
Query: 61 RSIADADPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF 119
+S + +P Q RKLFI GL ++TT E LRS F +G L + VV+ D T +S+G+GF+T+
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 120 KHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNP-VDVSLRKIFVGNVPNDMSAD 178
++ A+ K+DGRV AV S + P ++++KIFVG + D
Sbjct: 63 ATVEKVDAAMNARPHKVDGRVVEPKRAV---SREDSQRPGAHLTVKKIFVGGIKEDTEEH 119
Query: 179 KLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRL 238
L +F YG+IE + D+ +GK +GFA + ++ TV+G R
Sbjct: 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQKYHTVNGHNCEVRK 179
Query: 239 ADNKK 243
A +K+
Sbjct: 180 ALSKQ 184
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus
GN=Hnrnpa1 PE=1 SV=3
Length = 320
Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 95/181 (52%), Gaps = 5/181 (2%)
Query: 61 RSIADADPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF 119
+S + +P Q RKLFI GL ++TT E LRS F +G L + VV+ D T +S+G+GF+T+
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 120 KHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNP-VDVSLRKIFVGNVPNDMSAD 178
++ A+ K+DGRV AV S + P ++++KIFVG + D
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAV---SREDSQRPGAHLTVKKIFVGGIKEDTEEH 119
Query: 179 KLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRL 238
L +F YG+IE + D+ +GK +GFA + + ++ TV+G R
Sbjct: 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 179
Query: 239 A 239
A
Sbjct: 180 A 180
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 105 bits (262), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 85/168 (50%), Gaps = 9/168 (5%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+FI GL W+TT + LR F +GE+ + V+ D TG+S+G+GF+TFK+ + +
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
+DG++ A+ T K+FVG VP D + ++ F +G +
Sbjct: 224 -EHHLDGKIIDPKRAIPREEQEKT--------AKMFVGGVPGDCTEEEFRNFFNQFGRVL 274
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA 239
+ L DK TG+P+GF Y+ +A + P T+ GK + + A
Sbjct: 275 DATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRA 322
>sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoproteins A1 homolog OS=Xenopus
laevis GN=hnrnpa1 PE=2 SV=1
Length = 365
Score = 105 bits (262), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 98/184 (53%), Gaps = 3/184 (1%)
Query: 61 RSIADADPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF 119
+S A +P Q RKLFI GL ++TT E LR F +G L + VV+ D + +S+G+GF+T+
Sbjct: 3 KSEAPNEPEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTY 62
Query: 120 KHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADK 179
D A+ K+DGRV AV+ +S+ ++++KIFVG + D D
Sbjct: 63 LSTDEVDAAMTARPHKVDGRVVEPKRAVSRE--DSSRPGAHLTVKKIFVGGIKEDTEEDH 120
Query: 180 LLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA 239
L +F YG+IE + D+ +GK +GFA ++ + ++ TV+ R A
Sbjct: 121 LREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQKYHTVNNHNSQVRKA 180
Query: 240 DNKK 243
+K+
Sbjct: 181 LSKQ 184
>sp|P51990|RO22_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 358
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 92/173 (53%), Gaps = 2/173 (1%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALK 130
RKLFI GL ++TT E LR+ + +G+L + VV+ D A+ +S+G+GF+TF ++ A+
Sbjct: 9 RKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMS 68
Query: 131 EPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEI 190
IDGRV AVA S V+++K+FVG + D L +F YG+I
Sbjct: 69 ARPHTIDGRVVEPKRAVAREE--SAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKI 126
Query: 191 EEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKK 243
E + DKQ+GK +GF + + ++ T++G R A +K+
Sbjct: 127 ESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQKYHTINGHNAEVRKALSKQ 179
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 56 VLESVRSIAD-------ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKAT 108
V+E R++A A T +KLF+ G+ DT LR F YG++E +I DK +
Sbjct: 78 VVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQS 137
Query: 109 GKSKGYGFITFKHID 123
GK +G+GF+TF D
Sbjct: 138 GKKRGFGFVTFNDHD 152
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 99/195 (50%), Gaps = 19/195 (9%)
Query: 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF------- 119
D Q KLF+ G+ W+T + LR F+ YGE+ +A+V+ DK TG+ +G+GF+ F
Sbjct: 2 DSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLD 61
Query: 120 -----KH-IDGAMLALKEPSKKIDGRVT--VTNLAVAGNSGNSTNNPVDVSLRKIFVGNV 171
KH ID + +K + + +V+ NL + +SG N +KIFVG +
Sbjct: 62 RVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKT----KKIFVGGL 117
Query: 172 PNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDG 231
P ++ ++ +F YG + + + +D+ T +P+GF + + + + L + G
Sbjct: 118 PPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSG 177
Query: 232 KQLNCRLADNKKAKP 246
KQ+ + A K A P
Sbjct: 178 KQVEVKRALPKDANP 192
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 165 KIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVD 224
K+FVG + + DKL HF YGE+ + + DK TG+P+GF ++ L +
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66
Query: 225 PIKTVDGKQLNCRLADNKKAKPMGPDGGGPGNVSMNHGDG 264
++D ++++ + A +++ + + G GN++ + G
Sbjct: 67 K-HSIDTREVDVKRAMSREEQQV---SGRTGNLNTSRSSG 102
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 9/139 (6%)
Query: 14 AVLSDLESPNRLTPQ----DARKI-VERLTSDQLLDVLSSAVARHDDVLESVRSIADADP 68
+ SD +R+ + D R++ V+R S + V R ++ S S DA
Sbjct: 52 VIFSDPSVLDRVLQEKHSIDTREVDVKRAMSREEQQV----SGRTGNLNTSRSSGGDAYN 107
Query: 69 TQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLA 128
+K+F+ GL T E R F YG + + ++ D+AT + +G+GF++F D
Sbjct: 108 KTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSV 167
Query: 129 LKEPSKKIDGRVTVTNLAV 147
L + + G+ A+
Sbjct: 168 LHKTFHDLSGKQVEVKRAL 186
>sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1
SV=1
Length = 362
Score = 103 bits (256), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 100/189 (52%), Gaps = 14/189 (7%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+FI GL W TT EGLR F +GE++E +V+ D T +S+G+GF+TF G L +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVS-LRKIFVGNVPNDMSADKLLAHFACYGEI 190
++D + +A + P V+ +KIFVG + + + + + +F +G++
Sbjct: 81 SRHELDSKTIDPKVAFPRRA-----QPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKV 135
Query: 191 EEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKP---M 247
++ L FDK T + +GF +++ + +V+ + + ++N ++ + KKA+P M
Sbjct: 136 DDAMLMFDKTTNRHRGFGFVTFESED-----IVEKVCEIHFHEINNKMVECKKAQPKEVM 190
Query: 248 GPDGGGPGN 256
P G G
Sbjct: 191 SPTGSARGR 199
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 38/53 (71%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHID 123
+K+F+ GL +TT E ++ F +G++++A+++ DK T + +G+GF+TF+ D
Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 161
>sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1
SV=1
Length = 362
Score = 102 bits (255), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 100/189 (52%), Gaps = 14/189 (7%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+FI GL W TT EGLR F +GE++E +V+ D T +S+G+GF+TF G L +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVS-LRKIFVGNVPNDMSADKLLAHFACYGEI 190
++D + +A + P V+ +KIFVG + + + + + +F +G++
Sbjct: 81 SRHELDSKTIDPKVAFPRRA-----QPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKV 135
Query: 191 EEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKP---M 247
++ L FDK T + +GF +++ + +V+ + + ++N ++ + KKA+P M
Sbjct: 136 DDAMLMFDKTTNRHRGFGFVTFESED-----IVEKVCEIHFHEINNKMVECKKAQPKEVM 190
Query: 248 GPDGGGPGN 256
P G G
Sbjct: 191 SPTGSARGR 199
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 38/53 (71%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHID 123
+K+F+ GL +TT E ++ F +G++++A+++ DK T + +G+GF+TF+ D
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 161
>sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1
PE=2 SV=1
Length = 362
Score = 102 bits (255), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 100/189 (52%), Gaps = 14/189 (7%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+FI GL W TT EGLR F +GE++E +V+ D T +S+G+GF+TF G L +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVS-LRKIFVGNVPNDMSADKLLAHFACYGEI 190
++D + +A + P V+ +KIFVG + + + + + +F +G++
Sbjct: 81 SRHELDSKTIDPKVAFPRRA-----QPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKV 135
Query: 191 EEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKP---M 247
++ L FDK T + +GF +++ + +V+ + + ++N ++ + KKA+P M
Sbjct: 136 DDAMLMFDKTTNRHRGFGFVTFESED-----IVEKVCEIHFHEINNKMVECKKAQPKEVM 190
Query: 248 GPDGGGPGN 256
P G G
Sbjct: 191 SPTGSARGR 199
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 38/53 (71%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHID 123
+K+F+ GL +TT E ++ F +G++++A+++ DK T + +G+GF+TF+ D
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 161
>sp|Q6URK4|ROA3_RAT Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 102 bits (253), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 95/176 (53%), Gaps = 11/176 (6%)
Query: 67 DPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF---KHI 122
+P Q RKLFI GL ++TT + LR F +G L + VV+ D T +S+G+GF+T+ + +
Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 89
Query: 123 DGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLA 182
D AM A K+DGRV AV+ +S ++++KIFVG + D L
Sbjct: 90 DAAMCAR---PHKVDGRVVEPKRAVSRE--DSVKPGAHLTVKKIFVGGIKEDTEEYNLRD 144
Query: 183 HFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRL 238
+F YG+IE + D+Q+GK +GFA + + +V T++G NC +
Sbjct: 145 YFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGH--NCEV 198
>sp|Q8BG05|ROA3_MOUSE Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 102 bits (253), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 95/176 (53%), Gaps = 11/176 (6%)
Query: 67 DPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF---KHI 122
+P Q RKLFI GL ++TT + LR F +G L + VV+ D T +S+G+GF+T+ + +
Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 89
Query: 123 DGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLA 182
D AM A K+DGRV AV+ +S ++++KIFVG + D L
Sbjct: 90 DAAMCAR---PHKVDGRVVEPKRAVSRE--DSVKPGAHLTVKKIFVGGIKEDTEEYNLRD 144
Query: 183 HFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRL 238
+F YG+IE + D+Q+GK +GFA + + +V T++G NC +
Sbjct: 145 YFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGH--NCEV 198
>sp|P51991|ROA3_HUMAN Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens
GN=HNRNPA3 PE=1 SV=2
Length = 378
Score = 102 bits (253), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 95/176 (53%), Gaps = 11/176 (6%)
Query: 67 DPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITF---KHI 122
+P Q RKLFI GL ++TT + LR F +G L + VV+ D T +S+G+GF+T+ + +
Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 89
Query: 123 DGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLA 182
D AM A K+DGRV AV+ +S ++++KIFVG + D L
Sbjct: 90 DAAMCAR---PHKVDGRVVEPKRAVSRE--DSVKPGAHLTVKKIFVGGIKEDTEEYNLRD 144
Query: 183 HFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRL 238
+F YG+IE + D+Q+GK +GFA + + +V T++G NC +
Sbjct: 145 YFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGH--NCEV 198
>sp|P51989|RO21_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 346
Score = 101 bits (252), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 92/173 (53%), Gaps = 2/173 (1%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALK 130
RKLFI GL ++TT E LR+ + +G L + VV+ D A+ +S+G+GF+TF ++ A+
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMA 68
Query: 131 EPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEI 190
IDGRV AVA S V+++K+FVG + D L +F YG+I
Sbjct: 69 TRPHTIDGRVVEPKRAVAREE--SAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKI 126
Query: 191 EEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKK 243
+ + DKQ+GK +GFA + + ++ T++G R A +K+
Sbjct: 127 DSIEIITDKQSGKKRGFAFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSKQ 179
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 56 VLESVRSIAD-------ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKAT 108
V+E R++A A T +KLF+ G+ DT LR F YG+++ +I DK +
Sbjct: 78 VVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQS 137
Query: 109 GKSKGYGFITFKHID 123
GK +G+ F+TF D
Sbjct: 138 GKKRGFAFVTFDDHD 152
>sp|P51968|RO31_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 373
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 95/178 (53%), Gaps = 3/178 (1%)
Query: 67 DPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGA 125
+P Q RKLFI GL ++TT + LR F +G+L + VV+ D T +S+G+GF+T+ ++
Sbjct: 22 EPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 81
Query: 126 MLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFA 185
++ K+DGRV AV+ +S ++++KIFVG + D L +
Sbjct: 82 DASMSARPHKVDGRVVEPKRAVSRE--DSARPGAHLTVKKIFVGGIKEDTEEYHLRDYSE 139
Query: 186 CYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKK 243
YG+IE + D+Q+GK +GFA + + +V T++G + A +K+
Sbjct: 140 SYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 197
>sp|Q9VVE5|MSIR6_DROME RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster
GN=Rbp6 PE=2 SV=3
Length = 369
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 98/176 (55%), Gaps = 11/176 (6%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+FI GL W T+ E LR F YG++ EA+V+ D T +S+G+GF+TF + L +
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 89
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVS-LRKIFVGNVPNDMSADKLLAHFACYGEI 190
+ ++DG+ +A + +P V+ +KIFVG + + + + ++F +G I
Sbjct: 90 GTHELDGKKVDPKVAFPRRA-----HPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPI 144
Query: 191 EEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKP 246
E+ L FDKQT + +GF +++ + +VD + + ++N ++ + KKA+P
Sbjct: 145 EDAMLMFDKQTNRHRGFGFVTFQSED-----VVDKVCEIHFHEINNKMVECKKAQP 195
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 37/53 (69%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHID 123
+K+F+ GL TT E ++S F +G +E+A+++ DK T + +G+GF+TF+ D
Sbjct: 118 KKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSED 170
>sp|P51992|RO32_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 385
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 95/178 (53%), Gaps = 3/178 (1%)
Query: 67 DPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGA 125
+P Q RKLFI GL ++TT + LR F +G+L + VV+ D T +S+G+GF+T+ ++
Sbjct: 22 EPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEV 81
Query: 126 MLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFA 185
++ K+DGRV AV+ +S ++++KIFVG + D L +F
Sbjct: 82 DASMSARPHKVDGRVVEPKRAVSRE--DSARPGAHLTVKKIFVGGIKEDTEEYHLRDYFE 139
Query: 186 CYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKK 243
YG+IE + D+Q+GK +GFA + + +V T++ + A +K+
Sbjct: 140 GYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINLHNCEVKKALSKQ 197
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1
SV=1
Length = 346
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+FI GL W T+ + LR FS +GE+ E +V+ D T +S+G+GF+TF L +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVS-LRKIFVGNVPNDMSADKLLAHFACYGEI 190
P ++D + +A + P V+ +KIFVG + + + + +F +G++
Sbjct: 82 PHHELDSKTIDPKVAFPRRA-----QPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKV 136
Query: 191 EEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKP 246
E+ L FDK T + +GF ++ + +V+ + + ++N ++ + KKA+P
Sbjct: 137 EDAMLMFDKTTNRHRGFGFVTFENED-----VVEKVCEIHFHEINNKMVECKKAQP 187
>sp|Q9TTV2|ROA2_SAGOE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus oedipus
GN=HNRNPA2B1 PE=1 SV=1
Length = 341
Score = 99.8 bits (247), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 91/173 (52%), Gaps = 10/173 (5%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFK---HIDGAML 127
RKLFI GL + TT E LR+ + +G+L + VV+ D A+ +S+G+GF+TF +D AM
Sbjct: 9 RKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 128 ALKEPSKKIDGRVTVTNLAVAGNSGNSTNNP-VDVSLRKIFVGNVPNDMSADKLLAHFAC 186
A IDGRV AVA + P V+++K+FVG + D L +FA
Sbjct: 69 ARPHS---IDGRVVEPKRAVA---REESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFAE 122
Query: 187 YGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA 239
YG+I+ + D+Q+GK +GF + + ++ T++G R A
Sbjct: 123 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 175
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
Query: 56 VLESVRSIAD-------ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKAT 108
V+E R++A A T +KLF+ G+ DT LR F+ YG+++ +I D+ +
Sbjct: 78 VVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQS 137
Query: 109 GKSKGYGFITFKHID 123
GK +G+GF+TF D
Sbjct: 138 GKKRGFGFVTFDDHD 152
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1
Length = 407
Score = 99.4 bits (246), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 102/221 (46%), Gaps = 22/221 (9%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
KLF+ GL W TT E LRS FS YGE+ + V++ DK T +S+G+GF+ FK + L
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 132 PSKKIDGRVT-------------VTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSAD 178
+DGR T G ++N KIFVG +P++
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDN---SKSNKIFVGGIPHNCGET 127
Query: 179 KLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRL 238
+L +F +G + E + +D + +P+GF ++ + A+ + GK++ +
Sbjct: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 187
Query: 239 ADNKKAKPMGPDGGGPGNVSMNHGDGMGMVPPSAGGSYGGP 279
A+ + +K P G PG G +VP +A G G P
Sbjct: 188 AEPRDSKSQAP--GQPGASQW----GSRVVPNAANGWAGQP 222
>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1
SV=1
Length = 328
Score = 99.4 bits (246), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+FI GL W T+ + LR FS +GE+ E +V+ D T +S+G+GF+TF L +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVS-LRKIFVGNVPNDMSADKLLAHFACYGEI 190
P ++D + +A + P V+ +KIFVG + + + + +F +G++
Sbjct: 82 PHHELDSKTIDPKVAFPRRA-----QPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKV 136
Query: 191 EEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKP 246
E+ L FDK T + +GF ++ + +V+ + + ++N ++ + KKA+P
Sbjct: 137 EDAMLMFDKTTNRHRGFGFVTFENED-----VVEKVCEIHFHEINNKMVECKKAQP 187
>sp|Q2HJ60|ROA2_BOVIN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus
GN=HNRNPA2B1 PE=2 SV=1
Length = 341
Score = 98.6 bits (244), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 91/173 (52%), Gaps = 10/173 (5%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFK---HIDGAML 127
RKLFI GL ++TT E LR+ + +G+L + VV+ D A+ +S+G+GF+TF +D AM
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 128 ALKEPSKKIDGRVTVTNLAVAGNSGNSTNNP-VDVSLRKIFVGNVPNDMSADKLLAHFAC 186
A IDGRV AVA + P V+++K+FVG + D L +F
Sbjct: 69 ARPHS---IDGRVVEPKRAVA---REESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 122
Query: 187 YGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA 239
YG+I+ + D+Q+GK +GF + + ++ T++G R A
Sbjct: 123 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 175
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 56 VLESVRSIAD-------ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKAT 108
V+E R++A A T +KLF+ G+ DT LR F YG+++ +I D+ +
Sbjct: 78 VVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQS 137
Query: 109 GKSKGYGFITFKHID 123
GK +G+GF+TF D
Sbjct: 138 GKKRGFGFVTFDDHD 152
>sp|A7VJC2|ROA2_RAT Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus norvegicus
GN=Hnrnpa2b1 PE=1 SV=1
Length = 353
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 90/173 (52%), Gaps = 10/173 (5%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFK---HIDGAML 127
RKLFI GL ++TT E LR+ + +G+L + VV+ D A+ +S+G+GF+TF +D AM
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 128 ALKEPSKKIDGRVTVTNLAVAGNSGNSTNNP-VDVSLRKIFVGNVPNDMSADKLLAHFAC 186
A IDGRV AVA + P V+++K+FVG + D L +F
Sbjct: 81 ARPHS---IDGRVVEPKRAVA---REESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 134
Query: 187 YGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA 239
YG+I+ + D+Q+GK +GF + + + T++G R A
Sbjct: 135 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIFLQKYHTINGHNAEVRKA 187
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 56 VLESVRSIAD-------ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKAT 108
V+E R++A A T +KLF+ G+ DT LR F YG+++ +I D+ +
Sbjct: 90 VVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQS 149
Query: 109 GKSKGYGFITFKHID 123
GK +G+GF+TF D
Sbjct: 150 GKKRGFGFVTFDDHD 164
>sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus
GN=Hnrnpa2b1 PE=1 SV=2
Length = 353
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 91/173 (52%), Gaps = 10/173 (5%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFK---HIDGAML 127
RKLFI GL ++TT E LR+ + +G+L + VV+ D A+ +S+G+GF+TF +D AM
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 128 ALKEPSKKIDGRVTVTNLAVAGNSGNSTNNP-VDVSLRKIFVGNVPNDMSADKLLAHFAC 186
A IDGRV AVA + P V+++K+FVG + D L +F
Sbjct: 81 ARPHS---IDGRVVEPKRAVA---REESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 134
Query: 187 YGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA 239
YG+I+ + D+Q+GK +GF + + ++ T++G R A
Sbjct: 135 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 187
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 56 VLESVRSIAD-------ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKAT 108
V+E R++A A T +KLF+ G+ DT LR F YG+++ +I D+ +
Sbjct: 90 VVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQS 149
Query: 109 GKSKGYGFITFKHID 123
GK +G+GF+TF D
Sbjct: 150 GKKRGFGFVTFDDHD 164
>sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens
GN=HNRNPA2B1 PE=1 SV=2
Length = 353
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 91/173 (52%), Gaps = 10/173 (5%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFK---HIDGAML 127
RKLFI GL ++TT E LR+ + +G+L + VV+ D A+ +S+G+GF+TF +D AM
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 128 ALKEPSKKIDGRVTVTNLAVAGNSGNSTNNP-VDVSLRKIFVGNVPNDMSADKLLAHFAC 186
A IDGRV AVA + P V+++K+FVG + D L +F
Sbjct: 81 ARPHS---IDGRVVEPKRAVA---REESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 134
Query: 187 YGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA 239
YG+I+ + D+Q+GK +GF + + ++ T++G R A
Sbjct: 135 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 187
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 56 VLESVRSIAD-------ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKAT 108
V+E R++A A T +KLF+ G+ DT LR F YG+++ +I D+ +
Sbjct: 90 VVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQS 149
Query: 109 GKSKGYGFITFKHID 123
GK +G+GF+TF D
Sbjct: 150 GKKRGFGFVTFDDHD 164
>sp|Q5RBU8|ROA2_PONAB Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Pongo abelii
GN=HNRNPA2B1 PE=2 SV=1
Length = 353
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 91/173 (52%), Gaps = 10/173 (5%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFK---HIDGAML 127
RKLFI GL ++TT E LR+ + +G+L + VV+ D A+ +S+G+GF+TF +D AM
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 128 ALKEPSKKIDGRVTVTNLAVAGNSGNSTNNP-VDVSLRKIFVGNVPNDMSADKLLAHFAC 186
A IDGRV AVA + P V+++K+FVG + D L +F
Sbjct: 81 ARPHS---IDGRVVEPKRAVA---REESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 134
Query: 187 YGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA 239
YG+I+ + D+Q+GK +GF + + ++ T++G R A
Sbjct: 135 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKHHTINGHNAEVRKA 187
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 56 VLESVRSIAD-------ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKAT 108
V+E R++A A T +KLF+ G+ DT LR F YG+++ +I D+ +
Sbjct: 90 VVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQS 149
Query: 109 GKSKGYGFITFKHID 123
GK +G+GF+TF D
Sbjct: 150 GKKRGFGFVTFDDHD 164
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2
Length = 406
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 98/218 (44%), Gaps = 16/218 (7%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
KLF+ GL W TT E LRS FS YGE+ + V++ DK T +S+G+GF+ FK + L
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVD----------VSLRKIFVGNVPNDMSADKLL 181
+DGR P + KIFVG +P++ +L
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELR 130
Query: 182 AHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADN 241
+F +G + E + +D + +P+GF ++ + A+ + GK++ + A+
Sbjct: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 190
Query: 242 KKAKPMGPDGGGPGNVSMNHGDGMGMVPPSAGGSYGGP 279
+ +K P G PG G + P +A G G P
Sbjct: 191 RDSKNQAP--GQPGASQW----GSRVAPSAANGWAGQP 222
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens
GN=HNRNPAB PE=1 SV=2
Length = 332
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 89/174 (51%), Gaps = 10/174 (5%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+F+ GL WDT+ + L+ F+ +GE+ + + +D TG+S+G+GFI FK L +
Sbjct: 70 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 129
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNV-PNDMSADKLLAHFACYGEI 190
++DGRV A+A +PV +KIFVG + P + +K+ +F +GEI
Sbjct: 130 KEHRLDGRVIDPKKAMA-----MKKDPV----KKIFVGGLNPESPTEEKIREYFGEFGEI 180
Query: 191 EEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKA 244
E L D + K +GF +K E + L TV G + ++A K+
Sbjct: 181 EAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEV 234
>sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila
melanogaster GN=Hrb98DE PE=2 SV=1
Length = 365
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 92/180 (51%), Gaps = 7/180 (3%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALK 130
RKLFI GL + TT E L++ F +G + + VV+ D T +S+G+GFIT+ H A K
Sbjct: 31 RKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQK 90
Query: 131 EPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEI 190
KIDGRV AV +S N +++K+FVG + +D + +F +G I
Sbjct: 91 SRPHKIDGRVVEPKRAVPRQDIDSPN--AGATVKKLFVGALKDDHDEQSIRDYFQHFGNI 148
Query: 191 EEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKPMGPD 250
+ + DK+TGK +GFA E VD + QLN ++ D KKA P D
Sbjct: 149 VDINIVIDKETGKKRGFAF-----VEFDDYDPVDKVVLQKQHQLNGKMVDVKKALPKQND 203
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 39/73 (53%)
Query: 69 TQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLA 128
T +KLF+ L D + +R F +G + + +++DK TGK +G+ F+ F D
Sbjct: 120 TVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKV 179
Query: 129 LKEPSKKIDGRVT 141
+ + +++G++
Sbjct: 180 VLQKQHQLNGKMV 192
Score = 35.8 bits (81), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 163 LRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAAL 222
+RK+F+G + + + L AHF +G I + + D +T + +GF Y + +++
Sbjct: 30 MRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITY-----SHSSM 84
Query: 223 VDPIKTVDGKQLNCRLADNKKAKP 246
+D + +++ R+ + K+A P
Sbjct: 85 IDEAQKSRPHKIDGRVVEPKRAVP 108
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens
GN=HNRNPD PE=1 SV=1
Length = 355
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 91/180 (50%), Gaps = 8/180 (4%)
Query: 64 ADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHID 123
A A + K+FI GL WDTT + L+ FS +GE+ + + LD TG+S+G+GF+ FK +
Sbjct: 90 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 149
Query: 124 GAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAH 183
+ + K++G+V A A T PV +KIFVG + D +K+ +
Sbjct: 150 SVDKVMDQKEHKLNGKVIDPKRAKAM----KTKEPV----KKIFVGGLSPDTPEEKIREY 201
Query: 184 FACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKK 243
F +GE+E L D +T K +GF +K E + + V + ++A +K+
Sbjct: 202 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 261
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 89/173 (51%), Gaps = 9/173 (5%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+F+ GL WDT+ + L+ F+ +GE+ + + +D TG+S+G+GFI FK L +
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
++DGRV A+A +PV +KIFVG + + + +K+ +F +GEIE
Sbjct: 136 KEHRLDGRVIDPKKAMA-----MKKDPV----KKIFVGGLNPEATEEKIREYFGQFGEIE 186
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKA 244
L D + K +GF +K + + L TV G + ++A K+
Sbjct: 187 AIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQPKEV 239
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 39 SDQLLDVLSSAVARHD-DVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGEL 97
S + VL R D V++ +++A +K+F+ GL + T E +R F +GE+
Sbjct: 126 SSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGEI 185
Query: 98 EEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLA 146
E + +D K +G+ FITFK D L++ + G +A
Sbjct: 186 EAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVA 234
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus
GN=Hnrnpd PE=1 SV=2
Length = 355
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 91/180 (50%), Gaps = 8/180 (4%)
Query: 64 ADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHID 123
A A + K+FI GL WDTT + L+ FS +GE+ + + LD TG+S+G+GF+ FK +
Sbjct: 90 AAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 149
Query: 124 GAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAH 183
+ + K++G+V A A T PV +KIFVG + D +K+ +
Sbjct: 150 SVDKVMDQKEHKLNGKVIDPKRAKAM----KTKEPV----KKIFVGGLSPDTPEEKIREY 201
Query: 184 FACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKK 243
F +GE+E L D +T K +GF +K E + + V + ++A +K+
Sbjct: 202 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 261
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus
GN=Hnrnpd PE=1 SV=1
Length = 353
Score = 95.5 bits (236), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 91/180 (50%), Gaps = 8/180 (4%)
Query: 64 ADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHID 123
A A + K+FI GL WDTT + L+ FS +G++ + + LD TG+S+G+GF+ FK +
Sbjct: 88 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESE 147
Query: 124 GAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAH 183
+ + K++G+V A A T PV +KIFVG + D +K+ +
Sbjct: 148 SVDKVMDQKEHKLNGKVIDPKRAKAM----KTKEPV----KKIFVGGLSPDTPEEKIREY 199
Query: 184 FACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKK 243
F +GE+E L D +T K +GF +K E + + V + ++A +K+
Sbjct: 200 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 259
>sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1
Length = 360
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 89/189 (47%), Gaps = 11/189 (5%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
KLF+ GL W TT E LRS FS YGE+ + V++ DK T +S+G+GF+ FK + L
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 132 PSKKIDGRVTVTNLAVAG---------NSGNSTNNPVDVSLR--KIFVGNVPNDMSADKL 180
+DGR G P + R KIFVG +P++ +L
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETEL 130
Query: 181 LAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLAD 240
+F +G + E + +D + +P+GF ++ + A+ + GK++ + A+
Sbjct: 131 KEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 190
Query: 241 NKKAKPMGP 249
+ +K P
Sbjct: 191 PRDSKSQTP 199
Score = 40.0 bits (92), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 165 KIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVD 224
K+FVG + + + L ++F+ YGE+ + + DK T + +GF +K L
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 225 PIKTVDGKQLNCRLADNKKAKPMGPDGGGP 254
T+DG+ ++ KP P G P
Sbjct: 71 RPHTLDGRNID--------PKPCTPRGMQP 92
>sp|Q9CX86|ROA0_MOUSE Heterogeneous nuclear ribonucleoprotein A0 OS=Mus musculus
GN=Hnrnpa0 PE=1 SV=1
Length = 305
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 90/168 (53%), Gaps = 2/168 (1%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
KLFI GL T+ GLR F A+G L + VV+++ T +S+ +GF+T+ +++ A A+
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
+DG AV+ +S ++K+FVG + D++ L+ HF+ +G +E
Sbjct: 68 SPHAVDGNTVELKRAVSRE--DSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAVE 125
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA 239
+ + DKQ+GK +GF +++ + A A V + G ++ + A
Sbjct: 126 KAEIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKA 173
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 46 LSSAVARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILD 105
L AV+R D S R A A +KLF+ GL D L FS +G +E+A +I D
Sbjct: 79 LKRAVSRED----SARPGAHAKV--KKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIAD 132
Query: 106 KATGKSKGYGFITFKHIDGA 125
K +GK +G+GF+ F+ D A
Sbjct: 133 KQSGKKRGFGFVYFQSHDAA 152
Score = 37.4 bits (85), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 162 SLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAA 221
L K+F+G + S L HF +G + + + + QT + + F Y E A AA
Sbjct: 5 QLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAA 64
Query: 222 LVDPIKTVDGKQLNCRLADNKK--AKP 246
+ VDG + + A +++ A+P
Sbjct: 65 MAASPHAVDGNTVELKRAVSREDSARP 91
>sp|Q22037|ROA1_CAEEL Heterogeneous nuclear ribonucleoprotein A1 OS=Caenorhabditis
elegans GN=hrp-1 PE=1 SV=1
Length = 346
Score = 92.8 bits (229), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 89/170 (52%), Gaps = 8/170 (4%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFK---HIDGAML 127
RK+F+ GL +TT + +R +S +GE+ + +V+ D T +S+G+GF+TF +D AM
Sbjct: 23 RKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAM- 81
Query: 128 ALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACY 187
K+ IDG+ AV + N + + +VS ++++V V D + D L +F Y
Sbjct: 82 --KQRPHIIDGKTVDPKRAVPRDDKNRSES--NVSTKRLYVSGVREDHTEDMLTEYFTKY 137
Query: 188 GEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCR 237
G + + + DK T KP+GF + + ++ V+G + + R
Sbjct: 138 GTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVR 187
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 46/75 (61%)
Query: 64 ADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHID 123
++++ + ++L++ G+ D T + L F+ YG + ++ +ILDKAT K +G+GF+TF D
Sbjct: 107 SESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHD 166
Query: 124 GAMLALKEPSKKIDG 138
+ + S ++G
Sbjct: 167 SVDQCVLQKSHMVNG 181
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 7/119 (5%)
Query: 140 VTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDK 199
+T + SG+++ P +LRKIFVG + ++ + D + ++ +GEI + + D
Sbjct: 1 MTDVEIKAENGSGDASLEPE--NLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDP 58
Query: 200 QTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKPMGPDGGGPGNVS 258
T + +GF + AA+ +DGK + D K+A P NVS
Sbjct: 59 TTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTV-----DPKRAVPRDDKNRSESNVS 112
>sp|Q13151|ROA0_HUMAN Heterogeneous nuclear ribonucleoprotein A0 OS=Homo sapiens
GN=HNRNPA0 PE=1 SV=1
Length = 305
Score = 92.0 bits (227), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 89/168 (52%), Gaps = 2/168 (1%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
KLFI GL T+ GLR F A+G L + VV+++ T +S+ +GF+T+ +++ A A+
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
+DG AV+ +S ++K+FVG + D++ L+ HF+ +G +E
Sbjct: 68 SPHAVDGNTVELKRAVSRE--DSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVE 125
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA 239
+ + DKQ+GK +GF ++ + A A V + G ++ + A
Sbjct: 126 KAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKA 173
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 46 LSSAVARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILD 105
L AV+R D S R A A +KLF+ GL D L FS +G +E+A +I D
Sbjct: 79 LKRAVSRED----SARPGAHAKV--KKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIAD 132
Query: 106 KATGKSKGYGFITFKHIDGA 125
K +GK +G+GF+ F++ D A
Sbjct: 133 KQSGKKRGFGFVYFQNHDAA 152
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 106/235 (45%), Gaps = 24/235 (10%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
KLF+ GL W+TT E L F +G++ + VV+ + +G+S+G+GF+TF L+
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
+DGR + + + P K+F+G +P++++ L F YG++
Sbjct: 68 GPHTLDGRT----IDPKPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVT 123
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKPMGPDG 251
E + +D++ K +GF ++ + + ++GKQ+ KKA+P G
Sbjct: 124 EVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEI-----KKAEPRDGSG 178
Query: 252 GGPGNVSMNHGDGMGMVPPSAGGSYGGPGG---HGYPFSGPPPLGHHLNSSLGGP 303
G N S + GG+YG G H P P + N +GGP
Sbjct: 179 GQNSNNS------------TVGGAYGKLGNECSHWGPHHAPINMMQGQNGQMGGP 221
>sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1
SV=1
Length = 534
Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 90/186 (48%), Gaps = 14/186 (7%)
Query: 61 RSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFK 120
RS AD K+FI GL WDTT + LR F YG + + ++ D ATG+S+G+GF++F+
Sbjct: 149 RSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFE 208
Query: 121 HIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKL 180
+K +DG+V A+ + + T KIFVG + D+ +
Sbjct: 209 KPSSVDEVVK-TQHILDGKVIDPKRAIPRDEQDKTG--------KIFVGGIGPDVRPKEF 259
Query: 181 LAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLAD 240
F+ +G I + L DK TG+ +GF Y +A+ + K +D K +
Sbjct: 260 EEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQN--KFIDFKDRKIEI-- 315
Query: 241 NKKAKP 246
K+A+P
Sbjct: 316 -KRAEP 320
>sp|P48810|RB87F_DROME Heterogeneous nuclear ribonucleoprotein 87F OS=Drosophila
melanogaster GN=Hrb87F PE=2 SV=2
Length = 385
Score = 89.0 bits (219), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 93/178 (52%), Gaps = 9/178 (5%)
Query: 66 ADPTQ-RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKH--- 121
+P Q RKLFI GL + TT +GL++ F +G + + VV+ D T +S+G+GFIT+
Sbjct: 18 TEPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYM 77
Query: 122 IDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLL 181
ID A A P KIDGR AV +S N +++K+FVG + +D + L
Sbjct: 78 IDNAQNA--RPH-KIDGRTVEPKRAVPRQEIDSPN--AGATVKKLFVGGLRDDHDEECLR 132
Query: 182 AHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA 239
+F +G+I + DK TGK +GFA + + ++ ++ K L+ + A
Sbjct: 133 EYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKA 190
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%)
Query: 69 TQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLA 128
T +KLF+ GL D E LR F +G++ ++ DK TGK +G+ FI F D
Sbjct: 113 TVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKI 172
Query: 129 LKEPSKKIDGRVTVTNLAVA 148
+ + + I + A+A
Sbjct: 173 ILQKTHSIKNKTLDVKKAIA 192
>sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
OS=Schistocerca americana GN=HNRNP PE=2 SV=1
Length = 342
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 84/176 (47%), Gaps = 7/176 (3%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALK 130
RKLFI GL + TT E L+ F +GE+ + VV+ D T +S+G+GFIT+ A
Sbjct: 17 RKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQN 76
Query: 131 EPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEI 190
K+DGRV AV +++K+FVG + +M + L +F YG +
Sbjct: 77 ARPHKVDGRVVEPKRAVPRTEIGRPE--AGATVKKLFVGGIKEEMEENDLRDYFKQYGTV 134
Query: 191 EEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKP 246
+ DK+T K +GFA + + VD I Q+ + D KKA P
Sbjct: 135 VSAAIVVDKETRKKRGFAFVEFDDYDP-----VDKICLSRNHQIRGKHIDVKKALP 185
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 69 TQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHID 123
T +KLF+ G+ + LR F YG + A +++DK T K +G+ F+ F D
Sbjct: 106 TVKKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYD 160
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 163 LRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAAL 222
+RK+F+G + + + L HF +GEI + + D +T + +GF Y ++A +
Sbjct: 16 VRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITY-----SRAHM 70
Query: 223 VDPIKTVDGKQLNCRLADNKKAKP 246
VD + +++ R+ + K+A P
Sbjct: 71 VDDAQNARPHKVDGRVVEPKRAVP 94
>sp|Q08473|SQD_DROME RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1
SV=3
Length = 344
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 85/176 (48%), Gaps = 27/176 (15%)
Query: 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKH---IDGAML 127
RKLF+ GL W+TT + LR F YGE+E V D TG+S+G+ FI F + ID
Sbjct: 56 RKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSA 115
Query: 128 ALKE--PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLR--KIFVGNVPNDMSADKLLAH 183
A + SKK+D P R KIFVG + ++S +++ +
Sbjct: 116 ADEHIINSKKVD--------------------PKKAKARHGKIFVGGLTTEISDEEIKTY 155
Query: 184 FACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA 239
F +G I E + FDKQ + KGF + + + L P + + GK+++ + A
Sbjct: 156 FGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRA 211
>sp|Q02926|RB97D_DROME Ribonucleoprotein RB97D OS=Drosophila melanogaster GN=Rb97D PE=2
SV=1
Length = 471
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 100/213 (46%), Gaps = 15/213 (7%)
Query: 39 SDQLLDVLSSAVARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELE 98
SD+ DV+ A DD+ E RKLFI GL TT E L+ + +G++
Sbjct: 8 SDESADVIVLADREEDDICELEHL--------RKLFIGGLAPYTTEENLKLFYGQWGKVV 59
Query: 99 EAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNP 158
+ VV+ D AT +S+G+GFIT+ A + IDG+ A+ S
Sbjct: 60 DVVVMRDAATKRSRGFGFITYTKSLMVDRAQENRPHIIDGKTVEAKRALPRPERESRE-- 117
Query: 159 VDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGA 218
++S++K+FVG + ++ + L +F +G + L DK TGK +GFA + +
Sbjct: 118 TNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAV 177
Query: 219 QAALVDP---IKT--VDGKQLNCRLADNKKAKP 246
A++ IK VD K+ L +K +P
Sbjct: 178 DKAILKKQHAIKYVHVDVKKSIYNLDKKEKQQP 210
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 80/173 (46%), Gaps = 8/173 (4%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+FI GL WDT+ + L S +GE+ + + D TG+S+G+GF+ FK L+
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
K+DG++ A A +K+FVG + D S +++ +F +GEIE
Sbjct: 209 KEHKLDGKLIDPKRAKALKGKEPP--------KKVFVGGLSPDTSEEQIKEYFGAFGEIE 260
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKA 244
L D +T + +GF Y E + L + + ++A K+
Sbjct: 261 NIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEV 313
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 21/105 (20%)
Query: 45 VLSSAVARHDDVLESVRSIAD---ADPTQ----------RKLFIRGLGWDTTTEGLRSIF 91
VL A D VLE D DP + +K+F+ GL DT+ E ++ F
Sbjct: 194 VLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYF 253
Query: 92 SAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKI 136
A+GE+E + +D T + +G+ FIT+ +EP KK+
Sbjct: 254 GAFGEIENIELPMDTKTNERRGFCFITYTD--------EEPVKKL 290
>sp|Q3SWU3|HNRDL_RAT Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus
GN=Hnrpdl PE=2 SV=1
Length = 322
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 73/151 (48%), Gaps = 8/151 (5%)
Query: 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131
K+FI GL WDT+ + L S +GE+ + + D TG+S+G+GF+ FK L+
Sbjct: 52 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 111
Query: 132 PSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191
K+DG++ A A +K+FVG + D S +++ +F +GEIE
Sbjct: 112 KEHKLDGKLIDPKRAKALKGKEPP--------KKVFVGGLSPDTSEEQIKEYFGAFGEIE 163
Query: 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAAL 222
L D +T + +GF Y E + L
Sbjct: 164 NIELPMDTKTNERRGFCFITYTDEEPVKKLL 194
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 21/105 (20%)
Query: 45 VLSSAVARHDDVLESVRSIAD---ADPTQ----------RKLFIRGLGWDTTTEGLRSIF 91
VL A D VLE D DP + +K+F+ GL DT+ E ++ F
Sbjct: 97 VLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYF 156
Query: 92 SAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKI 136
A+GE+E + +D T + +G+ FIT+ +EP KK+
Sbjct: 157 GAFGEIENIELPMDTKTNERRGFCFITYTD--------EEPVKKL 193
>sp|Q6NU14|HNDLB_XENLA Heterogeneous nuclear ribonucleoprotein D-like-B OS=Xenopus laevis
GN=hnrpdl-b PE=2 SV=1
Length = 291
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 87/189 (46%), Gaps = 14/189 (7%)
Query: 34 VERLTSDQLLDVLSSAVARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSA 93
+ +T L+ LS + RH + S D + K+FI GL WDT+ + L S
Sbjct: 3 LSEITRSTLVSTLSRLLRRHKE------SNPDFFLIRSKMFIGGLSWDTSKKDLTEYLSR 56
Query: 94 YGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGN 153
+GE+ + + D TG+S+G+GF+ FK L+ K+DG++ A A
Sbjct: 57 FGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLETKEHKLDGKLIDPKRAKALQGKE 116
Query: 154 STNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYK 213
+K+FVG + + + +++ +F +GEIE L D +T + +GF Y
Sbjct: 117 PP--------KKVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYT 168
Query: 214 TAEGAQAAL 222
E Q L
Sbjct: 169 DEEPVQKLL 177
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 205,419,116
Number of Sequences: 539616
Number of extensions: 11967365
Number of successful extensions: 150214
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1975
Number of HSP's successfully gapped in prelim test: 1650
Number of HSP's that attempted gapping in prelim test: 46699
Number of HSP's gapped (non-prelim): 27375
length of query: 425
length of database: 191,569,459
effective HSP length: 120
effective length of query: 305
effective length of database: 126,815,539
effective search space: 38678739395
effective search space used: 38678739395
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)