Query 014397
Match_columns 425
No_of_seqs 423 out of 2973
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 04:44:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014397.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014397hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 1.9E-35 4.1E-40 286.8 26.9 172 65-244 102-277 (346)
2 TIGR01645 half-pint poly-U bin 100.0 5.8E-32 1.3E-36 275.4 24.5 180 66-245 103-287 (612)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 8.9E-32 1.9E-36 265.6 20.8 218 18-244 46-351 (352)
4 KOG0117 Heterogeneous nuclear 100.0 6.6E-30 1.4E-34 241.7 28.5 172 67-246 80-335 (506)
5 KOG0148 Apoptosis-promoting RN 100.0 1.6E-30 3.4E-35 231.5 18.6 167 70-242 62-238 (321)
6 KOG0144 RNA-binding protein CU 100.0 5.5E-31 1.2E-35 247.8 12.5 181 63-249 27-213 (510)
7 TIGR01648 hnRNP-R-Q heterogene 100.0 1E-28 2.3E-33 251.4 25.6 203 18-245 100-310 (578)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.4E-29 5.1E-34 248.3 20.4 167 69-243 2-172 (352)
9 TIGR01622 SF-CC1 splicing fact 100.0 4E-29 8.7E-34 255.2 21.5 178 65-242 84-266 (457)
10 TIGR01628 PABP-1234 polyadenyl 100.0 1.2E-29 2.6E-34 265.2 16.7 220 20-245 132-367 (562)
11 TIGR01628 PABP-1234 polyadenyl 100.0 1.6E-28 3.4E-33 256.8 17.9 215 18-244 43-263 (562)
12 KOG0127 Nucleolar protein fibr 100.0 2.7E-27 5.9E-32 228.7 17.1 222 20-242 50-378 (678)
13 KOG0145 RNA-binding protein EL 100.0 3.5E-27 7.6E-32 208.8 16.3 217 17-242 83-358 (360)
14 TIGR01648 hnRNP-R-Q heterogene 99.9 7.3E-27 1.6E-31 237.9 19.3 198 26-243 18-223 (578)
15 TIGR01642 U2AF_lg U2 snRNP aux 99.9 6E-26 1.3E-30 234.9 18.9 174 68-241 293-501 (509)
16 KOG0145 RNA-binding protein EL 99.9 6E-26 1.3E-30 201.0 14.6 169 66-242 37-209 (360)
17 TIGR01642 U2AF_lg U2 snRNP aux 99.9 2.6E-25 5.7E-30 230.1 20.7 172 65-242 170-375 (509)
18 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 3.4E-25 7.4E-30 226.5 19.9 163 70-242 2-174 (481)
19 KOG4205 RNA-binding protein mu 99.9 2.2E-25 4.9E-30 210.1 16.4 178 69-248 5-182 (311)
20 KOG0131 Splicing factor 3b, su 99.9 1.4E-25 3.1E-30 189.2 12.2 170 69-245 8-180 (203)
21 KOG0127 Nucleolar protein fibr 99.9 2.7E-25 5.8E-30 214.9 14.7 171 71-242 6-196 (678)
22 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 1.5E-24 3.3E-29 221.7 20.2 168 68-242 273-480 (481)
23 TIGR01622 SF-CC1 splicing fact 99.9 3.3E-24 7.1E-29 219.0 19.3 220 18-242 132-448 (457)
24 KOG0109 RNA-binding protein LA 99.9 1.4E-24 2.9E-29 195.5 10.5 146 72-243 4-151 (346)
25 KOG0124 Polypyrimidine tract-b 99.9 6.6E-24 1.4E-28 196.1 9.9 173 69-241 112-289 (544)
26 KOG0144 RNA-binding protein CU 99.9 8.9E-24 1.9E-28 199.4 10.5 174 68-242 122-504 (510)
27 KOG0123 Polyadenylate-binding 99.9 3.3E-23 7.1E-28 202.3 12.9 209 16-242 36-246 (369)
28 KOG0123 Polyadenylate-binding 99.9 1.1E-22 2.5E-27 198.5 15.7 154 71-246 2-157 (369)
29 KOG0146 RNA-binding protein ET 99.9 8E-23 1.7E-27 181.9 9.2 179 66-245 15-368 (371)
30 KOG0110 RNA-binding protein (R 99.9 8.6E-22 1.9E-26 196.7 12.7 173 70-242 515-693 (725)
31 KOG4211 Splicing factor hnRNP- 99.9 2.2E-19 4.7E-24 173.0 27.5 172 67-242 7-182 (510)
32 KOG0148 Apoptosis-promoting RN 99.9 1.1E-21 2.4E-26 175.1 10.5 140 67-243 3-143 (321)
33 KOG0147 Transcriptional coacti 99.9 2.6E-22 5.6E-27 195.5 6.1 183 61-243 170-359 (549)
34 TIGR01645 half-pint poly-U bin 99.8 2.8E-20 6.2E-25 190.1 18.4 132 17-148 149-283 (612)
35 KOG0105 Alternative splicing f 99.8 1.5E-18 3.3E-23 146.8 17.5 160 69-238 5-186 (241)
36 PLN03134 glycine-rich RNA-bind 99.8 1.3E-18 2.7E-23 148.6 14.6 87 160-246 31-118 (144)
37 KOG4211 Splicing factor hnRNP- 99.8 3.6E-18 7.9E-23 164.6 17.2 220 18-239 50-355 (510)
38 PLN03134 glycine-rich RNA-bind 99.7 5.2E-17 1.1E-21 138.6 11.7 84 67-150 31-115 (144)
39 KOG4212 RNA-binding protein hn 99.7 1.5E-16 3.3E-21 150.7 15.5 171 67-239 41-291 (608)
40 TIGR01659 sex-lethal sex-letha 99.7 5.9E-17 1.3E-21 157.7 11.2 123 18-149 150-275 (346)
41 KOG0147 Transcriptional coacti 99.7 4E-17 8.8E-22 159.5 9.5 167 71-242 279-528 (549)
42 KOG4206 Spliceosomal protein s 99.7 6.6E-16 1.4E-20 136.0 15.8 163 69-239 8-219 (221)
43 KOG0149 Predicted RNA-binding 99.7 4.2E-17 9E-22 143.8 7.0 83 159-241 8-90 (247)
44 KOG0149 Predicted RNA-binding 99.7 1.1E-16 2.3E-21 141.2 7.8 84 66-149 8-91 (247)
45 KOG4212 RNA-binding protein hn 99.7 1.1E-15 2.4E-20 145.0 13.8 71 164-239 537-608 (608)
46 KOG0106 Alternative splicing f 99.7 2.2E-16 4.7E-21 140.5 7.9 153 71-239 2-168 (216)
47 KOG1548 Transcription elongati 99.6 6.8E-15 1.5E-19 136.2 17.4 169 67-240 131-350 (382)
48 KOG0110 RNA-binding protein (R 99.6 1.6E-15 3.5E-20 152.1 12.2 169 66-240 381-596 (725)
49 KOG0113 U1 small nuclear ribon 99.6 1.1E-15 2.3E-20 138.9 9.4 98 156-253 94-192 (335)
50 KOG0124 Polypyrimidine tract-b 99.6 4.2E-15 9.1E-20 138.1 12.4 220 20-239 158-532 (544)
51 COG0724 RNA-binding proteins ( 99.6 8.4E-15 1.8E-19 138.3 14.2 152 70-221 115-283 (306)
52 KOG0122 Translation initiation 99.6 4.2E-15 9.1E-20 131.6 11.0 83 160-242 186-269 (270)
53 KOG0113 U1 small nuclear ribon 99.6 8.5E-15 1.9E-19 133.1 11.2 83 66-148 97-180 (335)
54 KOG0121 Nuclear cap-binding pr 99.6 5.5E-15 1.2E-19 118.1 6.2 82 67-148 33-115 (153)
55 PF00076 RRM_1: RNA recognitio 99.5 2.4E-14 5.2E-19 106.6 7.5 69 73-142 1-70 (70)
56 KOG1457 RNA binding protein (c 99.5 1.6E-13 3.4E-18 120.0 13.1 158 64-225 28-268 (284)
57 PF00076 RRM_1: RNA recognitio 99.5 3.3E-14 7.1E-19 105.9 7.6 69 166-235 1-70 (70)
58 KOG0122 Translation initiation 99.5 5.5E-14 1.2E-18 124.6 9.1 81 69-149 188-269 (270)
59 KOG0121 Nuclear cap-binding pr 99.5 5.5E-14 1.2E-18 112.4 7.6 80 162-241 35-115 (153)
60 PF14259 RRM_6: RNA recognitio 99.5 6.1E-14 1.3E-18 104.7 7.3 69 166-235 1-70 (70)
61 KOG4207 Predicted splicing fac 99.5 3.6E-14 7.9E-19 122.5 6.4 84 157-240 7-91 (256)
62 PLN03120 nucleic acid binding 99.5 1.6E-13 3.4E-18 125.5 9.7 77 163-242 4-80 (260)
63 PF14259 RRM_6: RNA recognitio 99.5 1E-13 2.2E-18 103.5 6.8 69 73-142 1-70 (70)
64 KOG0107 Alternative splicing f 99.5 1.5E-13 3.3E-18 116.0 7.9 76 69-149 9-85 (195)
65 PLN03120 nucleic acid binding 99.5 3.8E-13 8.2E-18 123.0 11.0 78 70-150 4-81 (260)
66 KOG1190 Polypyrimidine tract-b 99.5 2.1E-12 4.5E-17 122.1 15.5 163 70-241 297-490 (492)
67 KOG0126 Predicted RNA-binding 99.4 1.6E-14 3.5E-19 122.3 1.1 85 68-152 33-118 (219)
68 KOG0120 Splicing factor U2AF, 99.4 9.9E-13 2.1E-17 130.6 12.9 177 65-241 284-491 (500)
69 KOG0125 Ataxin 2-binding prote 99.4 2.3E-13 5.1E-18 125.3 7.5 82 159-242 92-174 (376)
70 KOG0107 Alternative splicing f 99.4 6.9E-13 1.5E-17 112.0 7.8 78 162-244 9-87 (195)
71 KOG1365 RNA-binding protein Fu 99.4 2.2E-13 4.7E-18 127.6 4.5 171 70-242 161-362 (508)
72 KOG0111 Cyclophilin-type pepti 99.4 5.7E-13 1.2E-17 116.1 6.2 86 161-246 8-94 (298)
73 KOG0129 Predicted RNA-binding 99.4 7.4E-12 1.6E-16 122.3 14.1 158 67-225 256-433 (520)
74 PLN03121 nucleic acid binding 99.4 2.8E-12 6.1E-17 115.4 10.3 78 162-242 4-81 (243)
75 KOG0125 Ataxin 2-binding prote 99.4 1.5E-12 3.3E-17 120.0 8.6 83 66-150 92-175 (376)
76 KOG0114 Predicted RNA-binding 99.4 2.6E-12 5.7E-17 99.0 8.2 80 66-148 14-94 (124)
77 KOG0126 Predicted RNA-binding 99.4 8.8E-14 1.9E-18 117.9 0.1 81 162-242 34-115 (219)
78 PLN03121 nucleic acid binding 99.4 3.4E-12 7.4E-17 114.9 10.2 77 69-148 4-80 (243)
79 PLN03213 repressor of silencin 99.3 2E-12 4.4E-17 124.7 8.4 79 160-242 7-88 (759)
80 KOG0108 mRNA cleavage and poly 99.3 7.1E-13 1.5E-17 130.9 5.3 81 71-151 19-100 (435)
81 smart00362 RRM_2 RNA recogniti 99.3 5E-12 1.1E-16 93.7 8.2 71 165-237 1-72 (72)
82 KOG4207 Predicted splicing fac 99.3 2.6E-12 5.6E-17 111.2 6.6 81 68-148 11-92 (256)
83 KOG0130 RNA-binding protein RB 99.3 2.9E-12 6.3E-17 103.4 6.5 87 157-243 66-153 (170)
84 KOG0111 Cyclophilin-type pepti 99.3 2.4E-12 5.2E-17 112.3 6.3 104 67-184 7-111 (298)
85 smart00362 RRM_2 RNA recogniti 99.3 9.1E-12 2E-16 92.2 8.6 70 72-143 1-71 (72)
86 smart00360 RRM RNA recognition 99.3 6.1E-12 1.3E-16 92.8 7.6 70 168-237 1-71 (71)
87 KOG4210 Nuclear localization s 99.3 1.5E-12 3.3E-17 123.0 5.3 177 69-245 87-267 (285)
88 KOG0105 Alternative splicing f 99.3 9.7E-12 2.1E-16 105.8 9.5 78 162-242 5-83 (241)
89 COG0724 RNA-binding proteins ( 99.3 8.3E-12 1.8E-16 117.8 10.0 79 163-241 115-194 (306)
90 PLN03213 repressor of silencin 99.3 8E-12 1.7E-16 120.6 9.4 78 67-148 7-87 (759)
91 KOG0128 RNA-binding protein SA 99.3 9.1E-14 2E-18 142.2 -4.2 154 68-246 665-819 (881)
92 KOG0130 RNA-binding protein RB 99.3 6E-12 1.3E-16 101.6 6.8 86 66-151 68-154 (170)
93 smart00360 RRM RNA recognition 99.3 1.4E-11 3E-16 90.9 8.3 69 75-143 1-70 (71)
94 KOG0114 Predicted RNA-binding 99.3 1.5E-11 3.3E-16 94.8 8.6 80 160-242 15-95 (124)
95 KOG1190 Polypyrimidine tract-b 99.3 5E-12 1.1E-16 119.6 6.5 162 68-240 26-226 (492)
96 KOG1456 Heterogeneous nuclear 99.3 6.6E-10 1.4E-14 104.2 20.2 164 67-242 28-199 (494)
97 KOG0131 Splicing factor 3b, su 99.3 7.7E-12 1.7E-16 106.4 6.2 81 161-241 7-88 (203)
98 KOG0117 Heterogeneous nuclear 99.3 4.8E-12 1E-16 121.1 5.5 75 69-151 258-333 (506)
99 cd00590 RRM RRM (RNA recogniti 99.2 4E-11 8.8E-16 89.2 8.7 73 165-238 1-74 (74)
100 KOG0108 mRNA cleavage and poly 99.2 1.4E-11 2.9E-16 121.9 7.4 81 164-244 19-100 (435)
101 cd00590 RRM RRM (RNA recogniti 99.2 6.8E-11 1.5E-15 87.9 9.3 73 72-145 1-74 (74)
102 KOG0120 Splicing factor U2AF, 99.2 3.2E-11 6.9E-16 119.9 9.5 170 67-242 172-369 (500)
103 KOG0116 RasGAP SH3 binding pro 99.2 2.1E-10 4.5E-15 112.9 13.4 82 163-244 288-369 (419)
104 KOG0415 Predicted peptidyl pro 99.2 8.2E-11 1.8E-15 109.5 9.8 84 65-148 234-318 (479)
105 KOG1365 RNA-binding protein Fu 99.2 8.9E-11 1.9E-15 110.3 9.9 175 64-239 54-240 (508)
106 smart00361 RRM_1 RNA recogniti 99.2 9.7E-11 2.1E-15 87.3 7.1 61 177-237 2-70 (70)
107 KOG4205 RNA-binding protein mu 99.1 3.8E-11 8.2E-16 113.9 5.0 85 162-246 5-89 (311)
108 KOG4454 RNA binding protein (R 99.1 2.4E-11 5.2E-16 106.2 2.0 139 66-224 5-144 (267)
109 KOG0109 RNA-binding protein LA 99.1 5.1E-11 1.1E-15 108.3 3.9 80 64-151 72-152 (346)
110 smart00361 RRM_1 RNA recogniti 99.1 3.1E-10 6.7E-15 84.6 7.2 60 84-143 2-69 (70)
111 PF13893 RRM_5: RNA recognitio 99.1 4.6E-10 1E-14 79.7 6.5 55 180-239 1-56 (56)
112 KOG0132 RNA polymerase II C-te 99.1 3.5E-10 7.6E-15 115.0 8.0 109 68-185 419-528 (894)
113 KOG0226 RNA-binding proteins [ 99.0 2E-10 4.4E-15 102.7 5.3 172 67-240 93-268 (290)
114 KOG0415 Predicted peptidyl pro 99.0 2.7E-10 5.9E-15 106.0 5.9 82 160-241 236-318 (479)
115 KOG0153 Predicted RNA-binding 99.0 7.7E-10 1.7E-14 103.1 8.2 81 156-242 221-303 (377)
116 KOG1456 Heterogeneous nuclear 99.0 1.4E-08 3.1E-13 95.4 14.9 169 64-242 114-363 (494)
117 PF13893 RRM_5: RNA recognitio 99.0 1.4E-09 3E-14 77.3 6.1 55 87-146 1-56 (56)
118 KOG0146 RNA-binding protein ET 99.0 8.2E-10 1.8E-14 99.3 5.4 86 66-151 281-367 (371)
119 KOG4208 Nucleolar RNA-binding 98.9 6.1E-09 1.3E-13 90.8 7.6 85 158-242 44-130 (214)
120 KOG0153 Predicted RNA-binding 98.9 7.3E-09 1.6E-13 96.7 8.4 78 65-148 223-302 (377)
121 KOG0112 Large RNA-binding prot 98.8 1.6E-09 3.5E-14 112.0 3.9 164 65-245 367-534 (975)
122 KOG4661 Hsp27-ERE-TATA-binding 98.8 1.2E-08 2.5E-13 100.6 8.9 80 69-148 404-484 (940)
123 KOG4208 Nucleolar RNA-binding 98.8 1.1E-08 2.4E-13 89.1 7.8 84 65-148 44-129 (214)
124 KOG4307 RNA binding protein RB 98.8 1E-08 2.2E-13 103.2 7.4 172 68-241 309-513 (944)
125 KOG0132 RNA polymerase II C-te 98.8 1.1E-08 2.5E-13 104.2 7.3 78 162-245 420-498 (894)
126 KOG4206 Spliceosomal protein s 98.8 2E-08 4.3E-13 89.1 7.4 77 163-242 9-90 (221)
127 KOG4661 Hsp27-ERE-TATA-binding 98.7 3.1E-08 6.7E-13 97.6 8.6 81 162-242 404-485 (940)
128 KOG4209 Splicing factor RNPS1, 98.7 4.6E-08 9.9E-13 89.7 7.6 86 64-149 95-180 (231)
129 KOG0533 RRM motif-containing p 98.7 7.9E-08 1.7E-12 87.9 8.5 83 162-245 82-165 (243)
130 KOG0533 RRM motif-containing p 98.7 9.3E-08 2E-12 87.5 8.8 83 66-149 79-162 (243)
131 KOG4660 Protein Mei2, essentia 98.7 3E-08 6.6E-13 98.1 5.8 159 63-233 68-241 (549)
132 KOG4209 Splicing factor RNPS1, 98.7 4.6E-08 1E-12 89.7 6.7 85 158-242 96-180 (231)
133 KOG0116 RasGAP SH3 binding pro 98.6 1.8E-07 3.8E-12 92.4 8.9 81 70-150 288-368 (419)
134 KOG4676 Splicing factor, argin 98.6 2.1E-08 4.6E-13 94.8 2.4 156 71-230 8-214 (479)
135 KOG0128 RNA-binding protein SA 98.6 7.9E-09 1.7E-13 106.6 -1.4 165 67-231 568-735 (881)
136 KOG4307 RNA binding protein RB 98.5 1.6E-06 3.5E-11 87.7 14.6 127 18-145 353-510 (944)
137 KOG1995 Conserved Zn-finger pr 98.5 2.6E-07 5.6E-12 87.2 7.8 86 159-244 62-156 (351)
138 KOG2193 IGF-II mRNA-binding pr 98.5 2.7E-08 5.9E-13 94.9 1.0 156 71-246 2-161 (584)
139 KOG0226 RNA-binding proteins [ 98.5 1.4E-07 3E-12 84.7 4.8 82 63-144 183-265 (290)
140 KOG1548 Transcription elongati 98.4 6.9E-07 1.5E-11 83.7 8.0 81 160-241 131-220 (382)
141 KOG4849 mRNA cleavage factor I 98.3 1.9E-06 4.1E-11 80.6 8.8 75 163-237 80-157 (498)
142 PF04059 RRM_2: RNA recognitio 98.3 3.3E-06 7.2E-11 66.3 8.8 66 71-136 2-70 (97)
143 KOG4454 RNA binding protein (R 98.3 2.6E-07 5.6E-12 81.2 2.3 76 162-239 8-84 (267)
144 KOG0106 Alternative splicing f 98.3 1E-06 2.2E-11 78.9 5.2 71 164-242 2-73 (216)
145 PF04059 RRM_2: RNA recognitio 98.3 5.3E-06 1.1E-10 65.2 8.1 79 164-242 2-87 (97)
146 KOG1457 RNA binding protein (c 98.3 8E-06 1.7E-10 72.2 10.1 88 160-247 31-123 (284)
147 KOG4660 Protein Mei2, essentia 98.3 8E-07 1.7E-11 88.2 4.4 73 158-235 70-143 (549)
148 KOG0151 Predicted splicing reg 98.2 3.1E-06 6.7E-11 86.0 6.2 84 66-149 170-257 (877)
149 KOG1995 Conserved Zn-finger pr 98.0 6.2E-06 1.3E-10 78.1 5.0 84 67-150 63-155 (351)
150 PF08777 RRM_3: RNA binding mo 98.0 1.1E-05 2.3E-10 64.9 4.6 71 164-240 2-78 (105)
151 KOG1855 Predicted RNA-binding 97.9 3.4E-05 7.3E-10 74.5 7.7 71 157-227 225-308 (484)
152 KOG0151 Predicted splicing reg 97.9 1.6E-05 3.4E-10 81.0 5.7 82 160-241 171-256 (877)
153 KOG4849 mRNA cleavage factor I 97.9 7.8E-06 1.7E-10 76.6 3.0 77 69-145 79-158 (498)
154 PF11608 Limkain-b1: Limkain b 97.8 6.7E-05 1.5E-09 56.3 6.6 70 71-150 3-78 (90)
155 KOG4210 Nuclear localization s 97.8 1.7E-05 3.7E-10 75.3 4.1 80 70-149 185-264 (285)
156 KOG0921 Dosage compensation co 97.8 0.00042 9E-09 73.1 14.2 13 109-121 899-911 (1282)
157 KOG1855 Predicted RNA-binding 97.7 2.1E-05 4.5E-10 75.9 3.4 69 65-133 226-307 (484)
158 COG5175 MOT2 Transcriptional r 97.7 0.00017 3.7E-09 67.6 8.9 117 67-183 111-240 (480)
159 PF11608 Limkain-b1: Limkain b 97.6 0.00015 3.3E-09 54.5 5.7 69 164-242 3-77 (90)
160 PF08777 RRM_3: RNA binding mo 97.6 0.00011 2.4E-09 59.0 4.8 57 71-133 2-58 (105)
161 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.0002 4.4E-09 49.8 5.2 52 71-129 2-53 (53)
162 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00025 5.5E-09 49.3 5.6 52 164-222 2-53 (53)
163 KOG2314 Translation initiation 97.5 0.00011 2.4E-09 73.2 4.7 118 68-186 56-183 (698)
164 KOG0115 RNA-binding protein p5 97.4 0.00042 9.1E-09 62.9 6.2 86 124-225 6-92 (275)
165 PF05172 Nup35_RRM: Nup53/35/4 97.3 0.0016 3.4E-08 51.6 8.0 78 162-240 5-90 (100)
166 COG5175 MOT2 Transcriptional r 97.2 0.00066 1.4E-08 63.7 5.5 82 161-242 112-203 (480)
167 KOG3152 TBP-binding protein, a 97.0 0.00089 1.9E-08 60.8 4.2 71 69-139 73-156 (278)
168 PF05172 Nup35_RRM: Nup53/35/4 96.9 0.0038 8.3E-08 49.4 6.8 77 69-146 5-89 (100)
169 KOG0129 Predicted RNA-binding 96.7 0.0027 5.7E-08 63.2 5.7 68 64-131 364-432 (520)
170 PF08952 DUF1866: Domain of un 96.6 0.01 2.2E-07 49.9 8.0 60 178-245 51-110 (146)
171 PF10309 DUF2414: Protein of u 96.6 0.012 2.5E-07 42.1 7.1 54 71-132 6-62 (62)
172 KOG2202 U2 snRNP splicing fact 96.6 0.00085 1.8E-08 61.0 1.6 62 86-148 84-147 (260)
173 KOG2202 U2 snRNP splicing fact 96.6 0.0011 2.3E-08 60.4 2.0 66 178-244 83-150 (260)
174 KOG2591 c-Mpl binding protein, 96.6 0.0034 7.5E-08 62.8 5.6 72 68-146 173-249 (684)
175 KOG2068 MOT2 transcription fac 96.5 0.0032 6.9E-08 59.7 4.3 115 68-182 75-199 (327)
176 PF10309 DUF2414: Protein of u 96.4 0.019 4.1E-07 41.1 7.0 55 163-225 5-62 (62)
177 KOG2314 Translation initiation 96.4 0.0094 2E-07 59.9 7.4 75 164-239 59-141 (698)
178 PF08675 RNA_bind: RNA binding 96.4 0.0088 1.9E-07 45.1 5.3 54 71-133 10-63 (87)
179 PF08952 DUF1866: Domain of un 96.3 0.014 3E-07 49.1 6.9 57 86-150 52-108 (146)
180 KOG3973 Uncharacterized conser 96.2 0.05 1.1E-06 51.6 10.6 6 179-184 244-249 (465)
181 KOG4676 Splicing factor, argin 96.2 0.007 1.5E-07 58.2 5.0 77 164-240 8-87 (479)
182 KOG1996 mRNA splicing factor [ 96.1 0.013 2.9E-07 54.2 6.1 64 177-240 300-365 (378)
183 KOG2135 Proteins containing th 96.1 0.0054 1.2E-07 60.4 3.8 70 166-241 375-445 (526)
184 PF10567 Nab6_mRNP_bdg: RNA-re 95.7 0.19 4.2E-06 46.9 11.9 159 66-225 11-211 (309)
185 KOG2193 IGF-II mRNA-binding pr 95.7 0.0071 1.5E-07 58.7 2.5 77 164-246 2-80 (584)
186 PF15023 DUF4523: Protein of u 95.6 0.07 1.5E-06 44.5 7.6 74 67-147 83-160 (166)
187 KOG0115 RNA-binding protein p5 95.5 0.016 3.5E-07 52.8 4.0 62 71-133 32-93 (275)
188 KOG2591 c-Mpl binding protein, 95.5 0.028 6.2E-07 56.5 6.0 70 163-239 175-249 (684)
189 KOG3152 TBP-binding protein, a 95.1 0.015 3.2E-07 53.1 2.5 70 164-233 75-157 (278)
190 PF07576 BRAP2: BRCA1-associat 95.0 0.19 4.2E-06 40.6 8.6 65 70-136 13-79 (110)
191 KOG1996 mRNA splicing factor [ 94.9 0.068 1.5E-06 49.7 6.4 64 84-147 300-365 (378)
192 PF15023 DUF4523: Protein of u 94.8 0.2 4.4E-06 41.8 8.1 77 158-241 81-161 (166)
193 KOG2416 Acinus (induces apopto 94.6 0.03 6.4E-07 56.8 3.3 75 66-146 440-519 (718)
194 KOG2416 Acinus (induces apopto 94.4 0.06 1.3E-06 54.7 5.1 77 159-241 440-521 (718)
195 PF07292 NID: Nmi/IFP 35 domai 94.2 0.046 1E-06 42.1 2.9 70 115-184 1-73 (88)
196 KOG2135 Proteins containing th 93.4 0.045 9.8E-07 54.1 2.1 75 68-148 370-445 (526)
197 KOG2253 U1 snRNP complex, subu 93.2 0.06 1.3E-06 55.5 2.6 114 64-186 34-158 (668)
198 KOG4285 Mitotic phosphoprotein 93.1 0.45 9.7E-06 44.7 8.0 73 164-243 198-271 (350)
199 PF08675 RNA_bind: RNA binding 93.1 0.34 7.4E-06 36.7 5.9 53 165-225 10-62 (87)
200 KOG4483 Uncharacterized conser 93.1 0.46 1E-05 46.2 8.3 58 69-133 390-448 (528)
201 PF07576 BRAP2: BRCA1-associat 92.6 1.1 2.3E-05 36.3 8.6 68 162-231 12-81 (110)
202 KOG0804 Cytoplasmic Zn-finger 92.4 0.93 2E-05 44.9 9.5 69 67-137 71-141 (493)
203 PF03467 Smg4_UPF3: Smg-4/UPF3 92.3 0.15 3.2E-06 45.1 3.6 66 68-133 5-76 (176)
204 KOG4285 Mitotic phosphoprotein 92.0 0.58 1.3E-05 43.9 7.2 68 67-141 194-261 (350)
205 KOG0112 Large RNA-binding prot 91.3 0.25 5.4E-06 52.7 4.6 74 67-146 452-528 (975)
206 KOG4213 RNA-binding protein La 90.9 0.18 3.9E-06 43.6 2.5 66 68-137 109-175 (205)
207 KOG2068 MOT2 transcription fac 90.4 0.09 1.9E-06 50.1 0.3 81 162-242 76-163 (327)
208 PF04847 Calcipressin: Calcipr 88.6 1.3 2.7E-05 39.4 6.2 60 176-241 8-70 (184)
209 PF04847 Calcipressin: Calcipr 88.2 1.9 4.1E-05 38.3 7.0 61 83-149 8-71 (184)
210 KOG2318 Uncharacterized conser 88.1 3.1 6.7E-05 42.7 9.1 39 67-105 171-214 (650)
211 PF03467 Smg4_UPF3: Smg-4/UPF3 87.9 0.42 9E-06 42.2 2.7 64 162-225 6-75 (176)
212 KOG2253 U1 snRNP complex, subu 85.3 0.83 1.8E-05 47.4 3.6 70 161-239 38-108 (668)
213 KOG4574 RNA-binding protein (c 84.6 0.91 2E-05 48.4 3.5 73 70-148 298-373 (1007)
214 COG5193 LHP1 La protein, small 84.2 0.27 5.8E-06 47.9 -0.5 66 67-132 171-246 (438)
215 PF14111 DUF4283: Domain of un 83.4 1.8 4E-05 36.8 4.5 110 81-197 28-139 (153)
216 PRK11634 ATP-dependent RNA hel 81.9 23 0.0005 38.0 12.9 61 172-241 496-562 (629)
217 PF11767 SET_assoc: Histone ly 81.6 4.8 0.0001 29.3 5.3 44 81-133 11-54 (66)
218 KOG4574 RNA-binding protein (c 80.2 1.2 2.5E-05 47.6 2.4 72 166-243 301-375 (1007)
219 KOG0804 Cytoplasmic Zn-finger 78.7 7.5 0.00016 38.8 7.2 67 163-231 74-142 (493)
220 PF03880 DbpA: DbpA RNA bindin 77.9 7.2 0.00016 28.9 5.5 58 80-146 11-74 (74)
221 PF03880 DbpA: DbpA RNA bindin 74.7 11 0.00024 27.9 5.8 58 173-239 11-74 (74)
222 PF11767 SET_assoc: Histone ly 70.2 17 0.00037 26.4 5.6 53 174-235 11-64 (66)
223 PF07530 PRE_C2HC: Associated 68.5 9.7 0.00021 27.8 4.1 63 178-242 2-65 (68)
224 COG5594 Uncharacterized integr 68.4 6.2 0.00013 42.4 4.2 32 65-96 203-235 (827)
225 PF03468 XS: XS domain; Inter 67.8 6.5 0.00014 32.1 3.4 48 73-123 11-67 (116)
226 COG5638 Uncharacterized conser 65.9 45 0.00098 33.0 9.1 38 68-105 144-186 (622)
227 PF10567 Nab6_mRNP_bdg: RNA-re 65.3 11 0.00024 35.6 4.7 81 161-241 13-107 (309)
228 KOG2891 Surface glycoprotein [ 63.5 13 0.00028 34.7 4.7 35 163-197 149-195 (445)
229 PF03468 XS: XS domain; Inter 63.1 9.8 0.00021 31.0 3.6 44 176-222 30-74 (116)
230 PF07530 PRE_C2HC: Associated 60.0 25 0.00054 25.6 4.9 61 85-148 2-64 (68)
231 PF02714 DUF221: Domain of unk 55.9 19 0.0004 34.9 4.9 57 115-186 1-57 (325)
232 KOG4483 Uncharacterized conser 55.7 25 0.00053 34.7 5.4 61 162-229 390-451 (528)
233 TIGR02542 B_forsyth_147 Bacter 55.3 62 0.0014 26.2 6.7 107 78-215 11-129 (145)
234 smart00596 PRE_C2HC PRE_C2HC d 55.1 30 0.00066 25.3 4.5 61 85-148 2-64 (69)
235 smart00596 PRE_C2HC PRE_C2HC d 54.7 18 0.0004 26.4 3.4 63 178-242 2-65 (69)
236 KOG4019 Calcineurin-mediated s 53.0 23 0.0005 31.1 4.3 73 164-242 11-90 (193)
237 KOG4019 Calcineurin-mediated s 52.1 20 0.00044 31.4 3.8 72 71-148 11-89 (193)
238 COG0481 LepA Membrane GTPase L 49.8 14 0.00031 37.5 2.9 63 67-130 294-361 (603)
239 KOG4410 5-formyltetrahydrofola 46.7 74 0.0016 30.0 6.8 46 164-215 331-377 (396)
240 KOG4410 5-formyltetrahydrofola 46.1 35 0.00075 32.1 4.6 49 70-123 330-378 (396)
241 KOG4213 RNA-binding protein La 46.1 21 0.00046 31.2 3.0 68 163-234 111-179 (205)
242 PF00403 HMA: Heavy-metal-asso 45.8 99 0.0021 21.4 6.2 56 165-226 1-60 (62)
243 PF07292 NID: Nmi/IFP 35 domai 44.5 29 0.00063 26.8 3.3 32 208-239 1-34 (88)
244 PF15513 DUF4651: Domain of un 43.7 52 0.0011 23.5 4.1 19 84-102 8-26 (62)
245 PRK14548 50S ribosomal protein 41.7 1.1E+02 0.0023 23.5 5.9 56 73-131 23-80 (84)
246 PF15513 DUF4651: Domain of un 41.3 50 0.0011 23.6 3.7 19 177-195 8-26 (62)
247 PF10915 DUF2709: Protein of u 41.3 1.1E+02 0.0023 27.2 6.5 74 96-188 36-117 (238)
248 TIGR03636 L23_arch archaeal ri 39.5 1.3E+02 0.0028 22.5 6.0 56 73-131 16-73 (77)
249 KOG3262 H/ACA small nucleolar 38.1 96 0.0021 27.3 5.7 8 187-194 98-105 (215)
250 PRK01178 rps24e 30S ribosomal 37.7 89 0.0019 24.7 5.1 47 80-127 29-80 (99)
251 PF08002 DUF1697: Protein of u 37.6 1.5E+02 0.0033 24.8 7.0 117 72-195 5-131 (137)
252 KOG4365 Uncharacterized conser 36.1 6.5 0.00014 39.0 -1.8 75 71-146 4-79 (572)
253 KOG3424 40S ribosomal protein 35.5 1.2E+02 0.0027 24.6 5.6 47 80-127 33-84 (132)
254 COG5193 LHP1 La protein, small 35.4 18 0.00038 35.7 1.0 62 162-223 173-244 (438)
255 KOG4008 rRNA processing protei 35.0 36 0.00077 31.2 2.8 33 161-193 38-70 (261)
256 PRK11901 hypothetical protein; 34.9 72 0.0016 30.8 5.0 58 170-229 249-308 (327)
257 PF09702 Cas_Csa5: CRISPR-asso 34.4 90 0.002 24.7 4.5 25 66-93 60-84 (105)
258 KOG4365 Uncharacterized conser 31.6 8.3 0.00018 38.3 -1.8 76 164-240 4-80 (572)
259 COG0030 KsgA Dimethyladenosine 31.5 4.5E+02 0.0097 24.7 10.0 35 70-104 95-129 (259)
260 KOG2891 Surface glycoprotein [ 30.9 39 0.00084 31.6 2.4 35 69-103 148-194 (445)
261 cd00874 RNA_Cyclase_Class_II R 30.9 5.1E+02 0.011 25.2 10.4 114 76-213 118-238 (326)
262 PRK06958 single-stranded DNA-b 30.6 1.5E+02 0.0033 26.3 6.0 8 72-79 7-14 (182)
263 PRK06545 prephenate dehydrogen 30.1 3.7E+02 0.0081 26.4 9.5 63 69-133 289-352 (359)
264 KOG4008 rRNA processing protei 30.1 49 0.0011 30.3 2.8 36 66-101 36-71 (261)
265 PRK11901 hypothetical protein; 30.0 1.6E+02 0.0036 28.5 6.5 66 66-136 241-308 (327)
266 PF03439 Spt5-NGN: Early trans 29.3 92 0.002 23.6 3.9 25 111-135 43-67 (84)
267 PF14893 PNMA: PNMA 28.6 49 0.0011 32.3 2.8 25 69-93 17-41 (331)
268 PF02714 DUF221: Domain of unk 28.1 54 0.0012 31.6 3.1 34 208-242 1-34 (325)
269 PTZ00071 40S ribosomal protein 27.8 1.4E+02 0.0029 25.0 4.9 47 80-127 34-86 (132)
270 cd04908 ACT_Bt0572_1 N-termina 27.1 2.2E+02 0.0049 19.9 7.5 48 176-227 14-62 (66)
271 PF11411 DNA_ligase_IV: DNA li 25.6 51 0.0011 20.8 1.5 16 80-95 19-34 (36)
272 COG2004 RPS24A Ribosomal prote 24.7 2.2E+02 0.0048 22.8 5.3 47 80-127 30-81 (107)
273 PRK09631 DNA topoisomerase IV 24.6 2.9E+02 0.0062 29.7 7.8 58 70-131 220-281 (635)
274 PRK10792 bifunctional 5,10-met 24.5 5.3E+02 0.012 24.6 8.9 15 174-188 140-154 (285)
275 KOG2854 Possible pfkB family c 24.1 3.4E+02 0.0074 26.5 7.4 142 69-225 80-232 (343)
276 PRK14175 bifunctional 5,10-met 24.1 1.5E+02 0.0033 28.3 5.2 83 58-144 80-164 (286)
277 KOG0156 Cytochrome P450 CYP2 s 24.0 1.3E+02 0.0028 31.2 5.1 63 70-141 32-97 (489)
278 COG3254 Uncharacterized conser 24.0 2.2E+02 0.0047 22.7 5.1 45 177-224 26-70 (105)
279 KOG2295 C2H2 Zn-finger protein 23.8 46 0.001 34.3 1.7 66 67-132 228-293 (648)
280 KOG1514 Origin recognition com 23.8 54 0.0012 35.1 2.3 26 160-185 506-533 (767)
281 PF14893 PNMA: PNMA 23.7 65 0.0014 31.4 2.7 24 163-186 18-41 (331)
282 CHL00123 rps6 ribosomal protei 23.6 2.3E+02 0.005 22.1 5.3 57 73-131 11-81 (97)
283 PF09869 DUF2096: Uncharacteri 23.4 5E+02 0.011 22.6 7.6 56 67-133 109-164 (169)
284 KOG1975 mRNA cap methyltransfe 23.1 2.3E+02 0.0049 27.7 6.0 25 68-92 92-116 (389)
285 PHA01632 hypothetical protein 23.1 88 0.0019 21.7 2.4 21 73-93 19-39 (64)
286 PF00403 HMA: Heavy-metal-asso 22.9 2.6E+02 0.0056 19.1 6.0 54 72-131 1-58 (62)
287 PRK14177 bifunctional 5,10-met 22.9 1.1E+02 0.0024 29.2 4.0 82 59-144 82-165 (284)
288 PRK10792 bifunctional 5,10-met 22.7 1.2E+02 0.0026 29.0 4.2 83 58-144 81-165 (285)
289 PRK14176 bifunctional 5,10-met 22.5 6.9E+02 0.015 23.9 10.3 53 69-134 40-93 (287)
290 PRK14176 bifunctional 5,10-met 22.5 1.6E+02 0.0034 28.2 4.9 83 58-144 86-170 (287)
291 PF11823 DUF3343: Protein of u 22.5 2.2E+02 0.0049 20.6 4.9 20 114-133 3-22 (73)
292 cd00187 TOP4c DNA Topoisomeras 22.0 3.7E+02 0.008 27.5 7.8 59 70-130 225-287 (445)
293 PRK14183 bifunctional 5,10-met 21.8 1.5E+02 0.0032 28.3 4.6 84 57-144 78-163 (281)
294 PRK14194 bifunctional 5,10-met 21.4 1.5E+02 0.0033 28.5 4.7 80 60-143 83-164 (301)
295 COG3254 Uncharacterized conser 21.2 3.6E+02 0.0077 21.5 5.8 45 84-131 26-70 (105)
296 COG2608 CopZ Copper chaperone 21.0 3.3E+02 0.0072 19.7 6.4 57 164-226 4-64 (71)
297 PF01282 Ribosomal_S24e: Ribos 21.0 3.8E+02 0.0082 20.3 5.9 47 80-127 11-62 (84)
298 COG5638 Uncharacterized conser 20.9 2.6E+02 0.0056 27.9 6.0 40 158-197 141-185 (622)
299 PTZ00338 dimethyladenosine tra 20.9 7.4E+02 0.016 23.6 9.5 46 72-133 103-148 (294)
300 PRK10629 EnvZ/OmpR regulon mod 20.8 4.8E+02 0.01 21.5 6.9 61 70-138 35-99 (127)
301 PRK14189 bifunctional 5,10-met 20.8 1.8E+02 0.0039 27.8 4.9 83 58-144 80-164 (285)
302 PF00276 Ribosomal_L23: Riboso 20.8 1.4E+02 0.0031 23.0 3.6 52 73-124 22-85 (91)
303 PRK14186 bifunctional 5,10-met 20.6 1.5E+02 0.0032 28.6 4.3 81 59-143 81-163 (297)
304 PF03439 Spt5-NGN: Early trans 20.4 1.5E+02 0.0033 22.4 3.6 22 204-225 43-64 (84)
305 PRK14191 bifunctional 5,10-met 20.3 1.5E+02 0.0033 28.3 4.4 83 58-144 79-163 (285)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=1.9e-35 Score=286.76 Aligned_cols=172 Identities=26% Similarity=0.415 Sum_probs=154.7
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEE
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVT 143 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v 143 (425)
......++|||++||+++||++|+++|+.||+|++|+|++|+.+++++|||||+|.++++|++||+.++ ..+.++.|.|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 455578899999999999999999999999999999999999999999999999999999999999888 8899999999
Q ss_pred EecccCCCCCCCCCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHh
Q 014397 144 NLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALV 223 (425)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~ 223 (425)
.++..... ....++|||.|||+++||++|+++|++||+|++|+|++|+.++++|+||||+|++.++|++||+
T Consensus 182 ~~a~p~~~--------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~ 253 (346)
T TIGR01659 182 SYARPGGE--------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAIS 253 (346)
T ss_pred eccccccc--------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHH
Confidence 98764321 2234689999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC-CccCC--eEEEEEEcccCCC
Q 014397 224 DPI-KTVDG--KQLNCRLADNKKA 244 (425)
Q Consensus 224 ~~~-~~~~g--r~i~v~~a~~~~~ 244 (425)
.++ ..|++ ++|.|++++....
T Consensus 254 ~lng~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 254 ALNNVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred HhCCCccCCCceeEEEEECCcccc
Confidence 974 66665 7899999876533
No 2
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=5.8e-32 Score=275.38 Aligned_cols=180 Identities=19% Similarity=0.339 Sum_probs=156.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTN 144 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~ 144 (425)
.....++|||+|||+++|+++|+++|++||+|.+|+|++|+.+++++|||||+|.+.++|++||+.++ ..|.+|.|.|.
T Consensus 103 a~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~ 182 (612)
T TIGR01645 103 ALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 182 (612)
T ss_pred hhcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeec
Confidence 34467899999999999999999999999999999999999999999999999999999999999888 88999999998
Q ss_pred ecccCCCCCC---CCCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHH
Q 014397 145 LAVAGNSGNS---TNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAA 221 (425)
Q Consensus 145 ~~~~~~~~~~---~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A 221 (425)
+......... .........++|||+||++++++++|+++|++||.|++|+|.+|+.++++||||||+|++.++|.+|
T Consensus 183 rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kA 262 (612)
T TIGR01645 183 RPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEA 262 (612)
T ss_pred ccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHH
Confidence 6543221111 0111223457899999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCC-CccCCeEEEEEEcccCCCC
Q 014397 222 LVDPI-KTVDGKQLNCRLADNKKAK 245 (425)
Q Consensus 222 ~~~~~-~~~~gr~i~v~~a~~~~~~ 245 (425)
|+.++ ..|+|+.|+|.++......
T Consensus 263 I~amNg~elgGr~LrV~kAi~pP~~ 287 (612)
T TIGR01645 263 IASMNLFDLGGQYLRVGKCVTPPDA 287 (612)
T ss_pred HHHhCCCeeCCeEEEEEecCCCccc
Confidence 99974 8999999999998765433
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=8.9e-32 Score=265.63 Aligned_cols=218 Identities=26% Similarity=0.312 Sum_probs=173.4
Q ss_pred CCCCCCCCChHHHHHHHHhhchhhHHHHHHHhhhccchhhhhhhhcccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCe
Q 014397 18 DLESPNRLTPQDARKIVERLTSDQLLDVLSSAVARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGEL 97 (425)
Q Consensus 18 ~~~~~~~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i 97 (425)
....++|.++++|+++++.++...+....... . ...........++|||+|||.++++++|+++|++||.|
T Consensus 46 g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v--~-------~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i 116 (352)
T TIGR01661 46 GYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKV--S-------YARPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQI 116 (352)
T ss_pred eEEEEEECcHHHHHHHHhhcccEEECCeeEEE--E-------eecccccccccceEEECCccccCCHHHHHHHHhccCCE
Confidence 34668899999999999999876664321000 0 00111223346689999999999999999999999999
Q ss_pred eEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCC--ceEEEEecccCCCCCCC---------------C---
Q 014397 98 EEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDG--RVTVTNLAVAGNSGNST---------------N--- 156 (425)
Q Consensus 98 ~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~g--r~~~v~~~~~~~~~~~~---------------~--- 156 (425)
..++++.+..++.++|||||+|.+.++|++||+.++ ..+.+ +.+.+.++......... .
T Consensus 117 ~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (352)
T TIGR01661 117 ITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPL 196 (352)
T ss_pred EEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCc
Confidence 999999998889999999999999999999999988 55655 45667665432210000 0
Q ss_pred -------------------------------------------------C-----------------CCCcccceEEEee
Q 014397 157 -------------------------------------------------N-----------------PVDVSLRKIFVGN 170 (425)
Q Consensus 157 -------------------------------------------------~-----------------~~~~~~~~l~V~n 170 (425)
+ .......+|||+|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~N 276 (352)
T TIGR01661 197 STILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYN 276 (352)
T ss_pred cccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeC
Confidence 0 0011123699999
Q ss_pred cCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEcccCCC
Q 014397 171 VPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLADNKKA 244 (425)
Q Consensus 171 L~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a~~~~~ 244 (425)
||+++++++|+++|++||.|++|+|++|+.|+++||||||+|.+.++|.+||+.+ +..|+||.|.|.++..+..
T Consensus 277 L~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 277 LSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred CCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 9999999999999999999999999999999999999999999999999999986 5999999999999988754
No 4
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.98 E-value=6.6e-30 Score=241.72 Aligned_cols=172 Identities=23% Similarity=0.382 Sum_probs=145.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCc-CCceEEEE
Q 014397 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKI-DGRVTVTN 144 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~-~gr~~~v~ 144 (425)
...-+.|||+.||.++.|++|..||++.|+|.+++||+|+.++.+||||||+|.+.++|++||+.++ .+| .|+.|.|.
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 4567889999999999999999999999999999999999999999999999999999999999988 444 57777776
Q ss_pred ecccCCC----------CCCC-----------------------------------------------------------
Q 014397 145 LAVAGNS----------GNST----------------------------------------------------------- 155 (425)
Q Consensus 145 ~~~~~~~----------~~~~----------------------------------------------------------- 155 (425)
.++.... ....
T Consensus 160 ~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~ 239 (506)
T KOG0117|consen 160 VSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNA 239 (506)
T ss_pred EeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCc
Confidence 6543211 0000
Q ss_pred ------------CCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHh
Q 014397 156 ------------NNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALV 223 (425)
Q Consensus 156 ------------~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~ 223 (425)
......+.+.|||+||+.+||||.|+++|++||.|++|+.++| ||||.|.+.++|.+|++
T Consensus 240 ~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~ 311 (506)
T KOG0117|consen 240 ITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMK 311 (506)
T ss_pred ceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHH
Confidence 0112234567999999999999999999999999999999876 99999999999999999
Q ss_pred cCC-CccCCeEEEEEEcccCCCCC
Q 014397 224 DPI-KTVDGKQLNCRLADNKKAKP 246 (425)
Q Consensus 224 ~~~-~~~~gr~i~v~~a~~~~~~~ 246 (425)
.++ ++|+|..|+|.+|++...+.
T Consensus 312 ~~ngkeldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 312 ETNGKELDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred HhcCceecCceEEEEecCChhhhc
Confidence 975 99999999999998765544
No 5
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.6e-30 Score=231.48 Aligned_cols=167 Identities=29% Similarity=0.476 Sum_probs=151.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEeccc
Q 014397 70 QRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAVA 148 (425)
Q Consensus 70 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~~ 148 (425)
.-.|||+.|..+++.++|++.|.+||+|.+++|++|..|.+||||+||.|...++|+.||..++ +-|..|.|+.+|+..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 4459999999999999999999999999999999999999999999999999999999999999 666778999999988
Q ss_pred CCCCCCCC--------CCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHH
Q 014397 149 GNSGNSTN--------NPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQA 220 (425)
Q Consensus 149 ~~~~~~~~--------~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~ 220 (425)
+....... .....+.++|||+|++..+||++|++.|++||.|.+|+|.+| +||+||.|++.|+|.+
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAah 215 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAH 215 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHH
Confidence 76443322 234556789999999999999999999999999999999988 7999999999999999
Q ss_pred HHhcC-CCccCCeEEEEEEcccC
Q 014397 221 ALVDP-IKTVDGKQLNCRLADNK 242 (425)
Q Consensus 221 A~~~~-~~~~~gr~i~v~~a~~~ 242 (425)
||..+ +.+|.|+.++|.|-+..
T Consensus 216 AIv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 216 AIVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred HHHHhcCceeCceEEEEeccccC
Confidence 99996 69999999999998654
No 6
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=5.5e-31 Score=247.83 Aligned_cols=181 Identities=28% Similarity=0.396 Sum_probs=155.6
Q ss_pred cccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC--CCcCCce
Q 014397 63 IADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS--KKIDGRV 140 (425)
Q Consensus 63 ~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~--~~~~gr~ 140 (425)
.++.|.+.-+|||+.||..++|.||+++|++||.|.+|.|++||.|+.++|||||.|.+.++|.+|+..++ +.|.|-.
T Consensus 27 ~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~ 106 (510)
T KOG0144|consen 27 TDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMH 106 (510)
T ss_pred CCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCC
Confidence 34556677789999999999999999999999999999999999999999999999999999999999887 6677765
Q ss_pred EEEEecccCCCCCCCCCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHH
Q 014397 141 TVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQA 220 (425)
Q Consensus 141 ~~v~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~ 220 (425)
..|+......+ .+...+.++|||+-|+..+||.||+++|++||.|++|.|++| ..+.+||||||+|++.+.|..
T Consensus 107 ~pvqvk~Ad~E-----~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd-~~~~sRGcaFV~fstke~A~~ 180 (510)
T KOG0144|consen 107 HPVQVKYADGE-----RERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRD-PDGLSRGCAFVKFSTKEMAVA 180 (510)
T ss_pred cceeecccchh-----hhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheec-ccccccceeEEEEehHHHHHH
Confidence 54444332221 122245689999999999999999999999999999999999 579999999999999999999
Q ss_pred HHhcCC--CccCC--eEEEEEEcccCCCCCCCC
Q 014397 221 ALVDPI--KTVDG--KQLNCRLADNKKAKPMGP 249 (425)
Q Consensus 221 A~~~~~--~~~~g--r~i~v~~a~~~~~~~~~~ 249 (425)
||+.++ .++.| .+|.|+||+.++.|....
T Consensus 181 Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~~ 213 (510)
T KOG0144|consen 181 AIKALNGTQTMEGCSQPLVVKFADTQKDKDGKR 213 (510)
T ss_pred HHHhhccceeeccCCCceEEEecccCCCchHHH
Confidence 999974 67777 679999999888776433
No 7
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.97 E-value=1e-28 Score=251.38 Aligned_cols=203 Identities=17% Similarity=0.267 Sum_probs=160.6
Q ss_pred CCCCCCCCChHHHHHHHHhhchhhHHHHHHHhhhccchhhhhhhhcccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCC-
Q 014397 18 DLESPNRLTPQDARKIVERLTSDQLLDVLSSAVARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGE- 96 (425)
Q Consensus 18 ~~~~~~~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~- 96 (425)
....+.|.+.|+|+++++.++..++..-. .+. .......++|||+|||+++|+++|+++|+++++
T Consensus 100 GfaFV~F~~~e~A~~Ai~~lng~~i~~Gr---------~l~-----V~~S~~~~rLFVgNLP~~~TeeeL~eeFskv~eg 165 (578)
T TIGR01648 100 GYAFVTFCGKEEAKEAVKLLNNYEIRPGR---------LLG-----VCISVDNCRLFVGGIPKNKKREEILEEFSKVTEG 165 (578)
T ss_pred ceEEEEeCCHHHHHHHHHHcCCCeecCCc---------ccc-----ccccccCceeEeecCCcchhhHHHHHHhhcccCC
Confidence 45678888999999999998876653110 000 011234678999999999999999999999864
Q ss_pred eeEEEEee-cCCCCCcccEEEEEecchHHHHHHHhcCC---CCcCCceEEEEecccCCCCCCCCCCCCcccceEEEeecC
Q 014397 97 LEEAVVIL-DKATGKSKGYGFITFKHIDGAMLALKEPS---KKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVP 172 (425)
Q Consensus 97 i~~v~i~~-~~~~g~skG~aFV~F~~~e~A~~Al~~~~---~~~~gr~~~v~~~~~~~~~~~~~~~~~~~~~~l~V~nL~ 172 (425)
|+++.++. ...+.+++|||||+|+++++|++|++.+. ..+.++.|.|.|+....... .......++|||+||+
T Consensus 166 vv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d---~~~~~~~k~LfVgNL~ 242 (578)
T TIGR01648 166 VVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVD---EDVMAKVKILYVRNLM 242 (578)
T ss_pred ceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeeccccccc---ccccccccEEEEeCCC
Confidence 44444433 23456889999999999999999998765 35789999999987654322 1223445789999999
Q ss_pred CcccHHHHHHHHhhc--CCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEcccCCCC
Q 014397 173 NDMSADKLLAHFACY--GEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLADNKKAK 245 (425)
Q Consensus 173 ~~~te~~L~~~F~~~--G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a~~~~~~ 245 (425)
+++|+++|+++|++| |+|++|+++ ++||||+|++.++|++||+.+ +.+|+++.|+|+++++....
T Consensus 243 ~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 243 TTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred CCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCcc
Confidence 999999999999999 999999876 459999999999999999986 59999999999999876544
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=2.4e-29 Score=248.34 Aligned_cols=167 Identities=24% Similarity=0.430 Sum_probs=150.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecc
Q 014397 69 TQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAV 147 (425)
Q Consensus 69 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~ 147 (425)
+.++|||+|||.++||++|+++|++||+|.+|+|++|+.+++++|||||+|.+.++|++||+.++ ..|.++.|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 35789999999999999999999999999999999999999999999999999999999999888 88999999999886
Q ss_pred cCCCCCCCCCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-C
Q 014397 148 AGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-I 226 (425)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~ 226 (425)
.... ....++|||.|||.++++++|+++|++||.|..++|+.+..++.++|||||+|++.++|++||+.+ +
T Consensus 82 ~~~~--------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g 153 (352)
T TIGR01661 82 PSSD--------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNG 153 (352)
T ss_pred cccc--------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 4322 223468999999999999999999999999999999999888999999999999999999999986 4
Q ss_pred CccCC--eEEEEEEcccCC
Q 014397 227 KTVDG--KQLNCRLADNKK 243 (425)
Q Consensus 227 ~~~~g--r~i~v~~a~~~~ 243 (425)
..+.+ ++|.|+++....
T Consensus 154 ~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 154 TTPSGCTEPITVKFANNPS 172 (352)
T ss_pred CccCCCceeEEEEECCCCC
Confidence 66666 678888886544
No 9
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=4e-29 Score=255.18 Aligned_cols=178 Identities=24% Similarity=0.404 Sum_probs=156.2
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEE
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTN 144 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~ 144 (425)
..+...++|||+|||+++|+++|+++|++||+|++|+|+.|+.+++++|||||+|.+.++|++||+.....+.++.|.|.
T Consensus 84 ~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 84 EAERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQ 163 (457)
T ss_pred ccccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEe
Confidence 34556789999999999999999999999999999999999999999999999999999999999977799999999998
Q ss_pred ecccCCCCCCC----CCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHH
Q 014397 145 LAVAGNSGNST----NNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQA 220 (425)
Q Consensus 145 ~~~~~~~~~~~----~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~ 220 (425)
++......... ........++|||+|||..+|+++|+++|++||.|+.|.|+.+..+++++|||||+|.+.++|++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~ 243 (457)
T TIGR01622 164 SSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKE 243 (457)
T ss_pred ecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 76543221111 11112236899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcC-CCccCCeEEEEEEcccC
Q 014397 221 ALVDP-IKTVDGKQLNCRLADNK 242 (425)
Q Consensus 221 A~~~~-~~~~~gr~i~v~~a~~~ 242 (425)
||+.+ +..|.+++|.|.++...
T Consensus 244 A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 244 ALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred HHHhcCCcEECCEEEEEEEccCC
Confidence 99986 58999999999998743
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=1.2e-29 Score=265.22 Aligned_cols=220 Identities=23% Similarity=0.371 Sum_probs=175.4
Q ss_pred CCCCCCChHHHHHHHHhhchhhHHHHHHHhhhccchhhhhhhhcccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE
Q 014397 20 ESPNRLTPQDARKIVERLTSDQLLDVLSSAVARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEE 99 (425)
Q Consensus 20 ~~~~~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~ 99 (425)
..+.|.++++|+++++.++...+..... .+..... ............++|||+|||+++|+++|+++|+.||+|++
T Consensus 132 afV~F~~~e~A~~Ai~~lng~~~~~~~i-~v~~~~~---~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~ 207 (562)
T TIGR01628 132 GFVHFEKEESAKAAIQKVNGMLLNDKEV-YVGRFIK---KHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITS 207 (562)
T ss_pred EEEEECCHHHHHHHHHHhcccEecCceE-EEecccc---ccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEE
Confidence 5578888999999998887665543211 0000000 00111223455678999999999999999999999999999
Q ss_pred EEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcC----CceEEEEecccCCCCCCC----------CCCCCcccc
Q 014397 100 AVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKID----GRVTVTNLAVAGNSGNST----------NNPVDVSLR 164 (425)
Q Consensus 100 v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~----gr~~~v~~~~~~~~~~~~----------~~~~~~~~~ 164 (425)
|+++.+. +++++|||||+|++.++|++|++.++ ..+. ++.+.|.++..+...... .........
T Consensus 208 ~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~ 286 (562)
T TIGR01628 208 AAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGV 286 (562)
T ss_pred EEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCC
Confidence 9999985 78999999999999999999999888 7777 888888877554432110 111234557
Q ss_pred eEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEcccCC
Q 014397 165 KIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLADNKK 243 (425)
Q Consensus 165 ~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a~~~~ 243 (425)
+|||+||++++|+++|+++|++||+|++|+|+.| .+++++|||||+|++.++|++||.++ +..|+|++|.|.++..+.
T Consensus 287 ~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~ 365 (562)
T TIGR01628 287 NLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKE 365 (562)
T ss_pred EEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcH
Confidence 8999999999999999999999999999999999 78999999999999999999999986 599999999999998765
Q ss_pred CC
Q 014397 244 AK 245 (425)
Q Consensus 244 ~~ 245 (425)
.+
T Consensus 366 ~~ 367 (562)
T TIGR01628 366 QR 367 (562)
T ss_pred HH
Confidence 43
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=1.6e-28 Score=256.76 Aligned_cols=215 Identities=23% Similarity=0.358 Sum_probs=174.2
Q ss_pred CCCCCCCCChHHHHHHHHhhchhhHHHHHHHhhhccchhhhhhhhcccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCe
Q 014397 18 DLESPNRLTPQDARKIVERLTSDQLLDVLSSAVARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGEL 97 (425)
Q Consensus 18 ~~~~~~~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i 97 (425)
....++|.+.++|+++++.++...+..... .+....+..........+|||+|||.++|+++|+++|+.||.|
T Consensus 43 G~afV~F~~~~~A~~Al~~ln~~~i~gk~i-------~i~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i 115 (562)
T TIGR01628 43 GYGYVNFQNPADAERALETMNFKRLGGKPI-------RIMWSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNI 115 (562)
T ss_pred eEEEEEECCHHHHHHHHHHhCCCEECCeeE-------EeecccccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCc
Confidence 346789999999999999988765532110 0111111112223345679999999999999999999999999
Q ss_pred eEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecccCCCCCCCCCCCCcccceEEEeecCCccc
Q 014397 98 EEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMS 176 (425)
Q Consensus 98 ~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t 176 (425)
++|+|+.+. +++++|||||+|.+.++|++||+.++ ..+.++.+.+.......... .......++|||+||++++|
T Consensus 116 ~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~---~~~~~~~~~l~V~nl~~~~t 191 (562)
T TIGR01628 116 LSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHERE---AAPLKKFTNLYVKNLDPSVN 191 (562)
T ss_pred ceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccccccc---cccccCCCeEEEeCCCCcCC
Confidence 999999985 78899999999999999999999988 77889999887665443322 12334557899999999999
Q ss_pred HHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccC----CeEEEEEEcccCCC
Q 014397 177 ADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVD----GKQLNCRLADNKKA 244 (425)
Q Consensus 177 e~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~----gr~i~v~~a~~~~~ 244 (425)
+++|+++|++||+|++|.|+.+ .+++++|||||+|++.++|.+|++.+ ...|. ++.|.|.++..+..
T Consensus 192 ee~L~~~F~~fG~i~~~~i~~~-~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~e 263 (562)
T TIGR01628 192 EDKLRELFAKFGEITSAAVMKD-GSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAE 263 (562)
T ss_pred HHHHHHHHHhcCCEEEEEEEEC-CCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhh
Confidence 9999999999999999999988 47899999999999999999999986 58888 99999988865543
No 12
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=2.7e-27 Score=228.67 Aligned_cols=222 Identities=27% Similarity=0.390 Sum_probs=170.7
Q ss_pred CCCCCCChHHHHHHHHhhchhhHHHHHHHh-h----hccc-----hhhhhhhhc-------ccCCCCCCeEEEcCCCCCC
Q 014397 20 ESPNRLTPQDARKIVERLTSDQLLDVLSSA-V----ARHD-----DVLESVRSI-------ADADPTQRKLFIRGLGWDT 82 (425)
Q Consensus 20 ~~~~~~~~e~~~~~~e~~~~~~~~~~~~~~-~----~~~~-----~~~~~~~~~-------~~~~~~~~~lfV~nLp~~~ 82 (425)
..+.|...||++.+++..+...+...+... . .+.. +.......+ ...+...-+|.|+||||.+
T Consensus 50 gfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~ 129 (678)
T KOG0127|consen 50 GFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKC 129 (678)
T ss_pred cceeeehHhHHHHHHHHhhcCcccceecccccccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCccc
Confidence 556777889999998887764444211100 0 0000 000000011 1112236679999999999
Q ss_pred CHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecccCCCCCCC------
Q 014397 83 TTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAVAGNSGNST------ 155 (425)
Q Consensus 83 te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~~~~~~~~~------ 155 (425)
.+.+|..+|+.||.|.+|.|.+.+ .++.+|||||+|.+..+|++||+.++ ..|.+|++.|.|++.+......
T Consensus 130 k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~ 208 (678)
T KOG0127|consen 130 KKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQ 208 (678)
T ss_pred CcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhh
Confidence 999999999999999999998765 66667999999999999999999999 9999999999998765432210
Q ss_pred ----------------------------------C------------------------------------------CCC
Q 014397 156 ----------------------------------N------------------------------------------NPV 159 (425)
Q Consensus 156 ----------------------------------~------------------------------------------~~~ 159 (425)
. +..
T Consensus 209 s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en 288 (678)
T KOG0127|consen 209 SLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTREN 288 (678)
T ss_pred hhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcccchhcccccccc
Confidence 0 000
Q ss_pred CcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC------C-CccCCe
Q 014397 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP------I-KTVDGK 232 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~------~-~~~~gr 232 (425)
.....+|||+|||+++|+++|.++|++||+|+.+.|+.|+.|+.++|.|||.|.+..+|++||+.. . ..|+||
T Consensus 289 ~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR 368 (678)
T KOG0127|consen 289 ITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGR 368 (678)
T ss_pred ccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEecc
Confidence 011256999999999999999999999999999999999999999999999999999999999885 2 568999
Q ss_pred EEEEEEcccC
Q 014397 233 QLNCRLADNK 242 (425)
Q Consensus 233 ~i~v~~a~~~ 242 (425)
.|.|..+..+
T Consensus 369 ~Lkv~~Av~R 378 (678)
T KOG0127|consen 369 LLKVTLAVTR 378 (678)
T ss_pred EEeeeeccch
Confidence 9999988654
No 13
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=3.5e-27 Score=208.78 Aligned_cols=217 Identities=23% Similarity=0.264 Sum_probs=174.7
Q ss_pred cCCCCCCCCChHHHHHHHHhhchhhHHHHHHHhhhccchhhhhhhhcccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCC
Q 014397 17 SDLESPNRLTPQDARKIVERLTSDQLLDVLSSAVARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGE 96 (425)
Q Consensus 17 ~~~~~~~~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~ 96 (425)
-..-.+++.+++||++++..++...+.... .+. ...+...+......|||.+||+.+|..||+.+|++||.
T Consensus 83 LGYGFVNYv~p~DAe~AintlNGLrLQ~KT----IKV-----SyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGr 153 (360)
T KOG0145|consen 83 LGYGFVNYVRPKDAEKAINTLNGLRLQNKT----IKV-----SYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGR 153 (360)
T ss_pred cccceeeecChHHHHHHHhhhcceeeccce----EEE-----EeccCChhhhcccceEEecCCccchHHHHHHHHHHhhh
Confidence 344678999999999999999977664321 111 11122233344556999999999999999999999999
Q ss_pred eeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCc--CCceEEEEecccCCCCCCC------------------
Q 014397 97 LEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKI--DGRVTVTNLAVAGNSGNST------------------ 155 (425)
Q Consensus 97 i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~--~gr~~~v~~~~~~~~~~~~------------------ 155 (425)
|...+|+.|..++.+||.+||.|...++|+.||+.++ +.- +..+|.|+++.........
T Consensus 154 IItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~ 233 (360)
T KOG0145|consen 154 IITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPM 233 (360)
T ss_pred hhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcc
Confidence 9999999999999999999999999999999999998 333 4457888876533211100
Q ss_pred -------------------------------------CCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeecc
Q 014397 156 -------------------------------------NNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFD 198 (425)
Q Consensus 156 -------------------------------------~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d 198 (425)
.+.......+|||-||..+++|.-|+++|.+||.|..|+|++|
T Consensus 234 hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD 313 (360)
T KOG0145|consen 234 HHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRD 313 (360)
T ss_pred cchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEec
Confidence 0001112356999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEeCCHHHHHHHHhcCC-CccCCeEEEEEEcccC
Q 014397 199 KQTGKPKGFALFVYKTAEGAQAALVDPI-KTVDGKQLNCRLADNK 242 (425)
Q Consensus 199 ~~~g~~kG~afV~F~~~~~A~~A~~~~~-~~~~gr~i~v~~a~~~ 242 (425)
..|.++|||+||+..+-++|..||..++ ..|.+|.|.|++.+.+
T Consensus 314 ~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 314 FTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred CCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 9999999999999999999999999974 8999999999998765
No 14
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.95 E-value=7.3e-27 Score=237.92 Aligned_cols=198 Identities=20% Similarity=0.276 Sum_probs=150.7
Q ss_pred ChHHHHHHHHhhchhhHHHHH-HHhhhccchhhhhhhhcccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEee
Q 014397 26 TPQDARKIVERLTSDQLLDVL-SSAVARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVIL 104 (425)
Q Consensus 26 ~~e~~~~~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~ 104 (425)
.+|.+.+++.+++...+.... +...-..... .........++|||+|||++++|++|+++|++||+|.+|+|++
T Consensus 18 ~~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~-----~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~ 92 (578)
T TIGR01648 18 PDEAALKALLERTGYTLVQENGQRKYGGPPPG-----WSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMM 92 (578)
T ss_pred ccHHHHHHHHHhhCccccccCCcccCCCCCCc-----ccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEE
Confidence 466777777766665553221 0110000000 0112234568999999999999999999999999999999999
Q ss_pred cCCCCCcccEEEEEecchHHHHHHHhcCC-CCcC-CceEEEEecccCCCCCCCCCCCCcccceEEEeecCCcccHHHHHH
Q 014397 105 DKATGKSKGYGFITFKHIDGAMLALKEPS-KKID-GRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLA 182 (425)
Q Consensus 105 ~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~-gr~~~v~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~ 182 (425)
| .+++++|||||+|.++++|++||+.++ ..+. ++.+.|.++. ..++|||+|||+++|+++|++
T Consensus 93 D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~--------------~~~rLFVgNLP~~~TeeeL~e 157 (578)
T TIGR01648 93 D-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV--------------DNCRLFVGGIPKNKKREEILE 157 (578)
T ss_pred C-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc--------------cCceeEeecCCcchhhHHHHH
Confidence 9 799999999999999999999999988 5553 6666565442 247899999999999999999
Q ss_pred HHhhcCC-ceeeeee-ccCCCCCcceEEEEEeCCHHHHHHHHhcCC---CccCCeEEEEEEcccCC
Q 014397 183 HFACYGE-IEEGPLG-FDKQTGKPKGFALFVYKTAEGAQAALVDPI---KTVDGKQLNCRLADNKK 243 (425)
Q Consensus 183 ~F~~~G~-v~~v~i~-~d~~~g~~kG~afV~F~~~~~A~~A~~~~~---~~~~gr~i~v~~a~~~~ 243 (425)
+|+++++ |+++.+. .+..+.+++|||||+|+++++|.+|++++. ..++++.|.|+|+.++.
T Consensus 158 eFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~ 223 (578)
T TIGR01648 158 EFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEE 223 (578)
T ss_pred HhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccc
Confidence 9999864 4444333 333567889999999999999999998852 56899999999987653
No 15
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.94 E-value=6e-26 Score=234.95 Aligned_cols=174 Identities=16% Similarity=0.240 Sum_probs=145.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEec
Q 014397 68 PTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLA 146 (425)
Q Consensus 68 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~ 146 (425)
...++|||+|||+.+|+++|+++|+.||.|+.|.|++++.+++++|||||+|.+.++|++||+.++ ..|.++.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 346789999999999999999999999999999999999999999999999999999999999888 8899999999987
Q ss_pred ccCCCCCCCC--------------------CCCCcccceEEEeecCCc----------ccHHHHHHHHhhcCCceeeeee
Q 014397 147 VAGNSGNSTN--------------------NPVDVSLRKIFVGNVPND----------MSADKLLAHFACYGEIEEGPLG 196 (425)
Q Consensus 147 ~~~~~~~~~~--------------------~~~~~~~~~l~V~nL~~~----------~te~~L~~~F~~~G~v~~v~i~ 196 (425)
.......... ......+++|+|.||... ...++|+++|++||.|+.|.|+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~ 452 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIP 452 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEee
Confidence 5432211100 001224677999999632 1236799999999999999998
Q ss_pred ccC---CCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEccc
Q 014397 197 FDK---QTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLADN 241 (425)
Q Consensus 197 ~d~---~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a~~ 241 (425)
++. .++..+|++||+|++.++|++||+.| +..|+|+.|.|.+...
T Consensus 453 ~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 453 RPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred ccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 753 34567899999999999999999997 5999999999998754
No 16
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=6e-26 Score=200.97 Aligned_cols=169 Identities=23% Similarity=0.421 Sum_probs=151.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTN 144 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~ 144 (425)
.+...+.|.|.-||..+|++||+.+|...|+|++|++++||.++.|.||+||.|-+++||++||..++ ..+..+.|.|.
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 35567789999999999999999999999999999999999999999999999999999999999999 78888999999
Q ss_pred ecccCCCCCCCCCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhc
Q 014397 145 LAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVD 224 (425)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~ 224 (425)
++.+.. +......|||++||..+|..||+++|++||.|...+|+.|..++.+||.+||.|+..++|+.||..
T Consensus 117 yARPSs--------~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~ 188 (360)
T KOG0145|consen 117 YARPSS--------DSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKG 188 (360)
T ss_pred eccCCh--------hhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHh
Confidence 986533 233446899999999999999999999999999999999999999999999999999999999988
Q ss_pred CC-CccCC--eEEEEEEcccC
Q 014397 225 PI-KTVDG--KQLNCRLADNK 242 (425)
Q Consensus 225 ~~-~~~~g--r~i~v~~a~~~ 242 (425)
++ ..--| .+|.|+++...
T Consensus 189 lNG~~P~g~tepItVKFannP 209 (360)
T KOG0145|consen 189 LNGQKPSGCTEPITVKFANNP 209 (360)
T ss_pred ccCCCCCCCCCCeEEEecCCc
Confidence 64 44333 57999999654
No 17
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.93 E-value=2.6e-25 Score=230.12 Aligned_cols=172 Identities=20% Similarity=0.285 Sum_probs=139.1
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhc------------CCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcC
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAY------------GELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEP 132 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~------------G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~ 132 (425)
+.....++|||+|||+++|+++|+++|..+ ..|..+.+ .+.++||||+|.+.++|++||+..
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~l~ 243 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMALD 243 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhcCC
Confidence 445568899999999999999999999975 22333333 345789999999999999999744
Q ss_pred CCCcCCceEEEEecccCCCCC-------CC--------------CCCCCcccceEEEeecCCcccHHHHHHHHhhcCCce
Q 014397 133 SKKIDGRVTVTNLAVAGNSGN-------ST--------------NNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191 (425)
Q Consensus 133 ~~~~~gr~~~v~~~~~~~~~~-------~~--------------~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~ 191 (425)
...|.++.|.|.......... .. ........++|||+|||+.+|+++|+++|++||.|+
T Consensus 244 g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~ 323 (509)
T TIGR01642 244 SIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLK 323 (509)
T ss_pred CeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCee
Confidence 488899998886543222100 00 001123457899999999999999999999999999
Q ss_pred eeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEcccC
Q 014397 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLADNK 242 (425)
Q Consensus 192 ~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a~~~ 242 (425)
.+.|+.+..+++++|||||+|.+.++|++||+.+ +..|.++.|.|.++...
T Consensus 324 ~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 324 AFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred EEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 9999999999999999999999999999999987 58999999999998643
No 18
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.93 E-value=3.4e-25 Score=226.54 Aligned_cols=163 Identities=16% Similarity=0.153 Sum_probs=135.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcC--C-CCcCCceEEEEec
Q 014397 70 QRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEP--S-KKIDGRVTVTNLA 146 (425)
Q Consensus 70 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~--~-~~~~gr~~~v~~~ 146 (425)
+++|||+|||+++||++|+++|++||+|.+|+|+++ |+||||+|.+.++|++||+.+ + ..+.++.|.|.++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 678999999999999999999999999999999854 579999999999999999864 3 7899999999998
Q ss_pred ccCCCCCCCC----CCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHH
Q 014397 147 VAGNSGNSTN----NPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAAL 222 (425)
Q Consensus 147 ~~~~~~~~~~----~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~ 222 (425)
.......... ........+|||.||++++|+++|+++|++||+|++|.|+++.. +++|||+|++.++|.+|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~ 151 (481)
T TIGR01649 76 TSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAK 151 (481)
T ss_pred CCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHH
Confidence 6543222111 11122345799999999999999999999999999999987643 468999999999999999
Q ss_pred hcC-CCccCC--eEEEEEEcccC
Q 014397 223 VDP-IKTVDG--KQLNCRLADNK 242 (425)
Q Consensus 223 ~~~-~~~~~g--r~i~v~~a~~~ 242 (425)
+.| +..|.+ ++|+|.+++..
T Consensus 152 ~~Lng~~i~~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 152 AALNGADIYNGCCTLKIEYAKPT 174 (481)
T ss_pred HHhcCCcccCCceEEEEEEecCC
Confidence 987 477754 58999998754
No 19
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.93 E-value=2.2e-25 Score=210.11 Aligned_cols=178 Identities=30% Similarity=0.600 Sum_probs=164.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEEeccc
Q 014397 69 TQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLAVA 148 (425)
Q Consensus 69 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~~~~~ 148 (425)
+.++|||++|+|++|++.|++.|++||+|.+|.+++|+.+++++||+||+|++++...++|....+.|+++.+.++.+..
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCc
Q 014397 149 GNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKT 228 (425)
Q Consensus 149 ~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~ 228 (425)
+...... .....+++|||+.||.++++++|+++|++||.|.++.|+.|..+.++++|+||+|.+++++.+++.+.-+.
T Consensus 85 r~~~~~~--~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~ 162 (311)
T KOG4205|consen 85 REDQTKV--GRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHD 162 (311)
T ss_pred ccccccc--ccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceee
Confidence 6654432 22236789999999999999999999999999999999999999999999999999999999999988899
Q ss_pred cCCeEEEEEEcccCCCCCCC
Q 014397 229 VDGKQLNCRLADNKKAKPMG 248 (425)
Q Consensus 229 ~~gr~i~v~~a~~~~~~~~~ 248 (425)
|+++.++|+.|.++......
T Consensus 163 ~~gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKEVMQST 182 (311)
T ss_pred ecCceeeEeeccchhhcccc
Confidence 99999999999988776543
No 20
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.93 E-value=1.4e-25 Score=189.19 Aligned_cols=170 Identities=26% Similarity=0.360 Sum_probs=152.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecc
Q 014397 69 TQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAV 147 (425)
Q Consensus 69 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~ 147 (425)
...||||+||+..++++.|.++|-+.|+|.++++.+|+.+...+|||||+|.++|+|+-|++.++ ..+.+|+|.|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 45689999999999999999999999999999999999999999999999999999999999999 78899999999887
Q ss_pred cCCCCCCCCCCCCcccceEEEeecCCcccHHHHHHHHhhcCCcee-eeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-
Q 014397 148 AGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEE-GPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP- 225 (425)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~-v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~- 225 (425)
..... ......|||+||...++|..|.+.|+.||.|.. -.|++|..|+.+++|+||.|++.+++.+||..+
T Consensus 88 ~~~~n-------l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~n 160 (203)
T KOG0131|consen 88 AHQKN-------LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMN 160 (203)
T ss_pred ccccc-------ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhc
Confidence 32221 122378999999999999999999999998775 478899999999999999999999999999997
Q ss_pred CCccCCeEEEEEEcccCCCC
Q 014397 226 IKTVDGKQLNCRLADNKKAK 245 (425)
Q Consensus 226 ~~~~~gr~i~v~~a~~~~~~ 245 (425)
+..+..++|.|+++..+..+
T Consensus 161 gq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 161 GQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred cchhcCCceEEEEEEecCCC
Confidence 58899999999999766543
No 21
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=2.7e-25 Score=214.92 Aligned_cols=171 Identities=27% Similarity=0.452 Sum_probs=150.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecccC
Q 014397 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAVAG 149 (425)
Q Consensus 71 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~~~ 149 (425)
.||||++||++++.++|.++|+.+|+|..|.++.++.+..++||+||+|+-.|+++.||++.. ..|.||.|.|..+..+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 689999999999999999999999999999999999999999999999999999999999988 7899999999988765
Q ss_pred CCCCCCCC--------------C--C--CcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEE
Q 014397 150 NSGNSTNN--------------P--V--DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFV 211 (425)
Q Consensus 150 ~~~~~~~~--------------~--~--~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~ 211 (425)
........ + . +....+|.|+||||.|.+++|+.+|++||.|.+|.|++.+. ++..|||||.
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~ 164 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQ 164 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEE
Confidence 54431100 0 1 12256799999999999999999999999999999997754 5555999999
Q ss_pred eCCHHHHHHHHhcCC-CccCCeEEEEEEcccC
Q 014397 212 YKTAEGAQAALVDPI-KTVDGKQLNCRLADNK 242 (425)
Q Consensus 212 F~~~~~A~~A~~~~~-~~~~gr~i~v~~a~~~ 242 (425)
|.+..+|.+||+.++ ++|+||+|-|.||..+
T Consensus 165 fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 165 FKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred EeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 999999999999975 9999999999999665
No 22
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.93 E-value=1.5e-24 Score=221.74 Aligned_cols=168 Identities=18% Similarity=0.248 Sum_probs=139.0
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEe
Q 014397 68 PTQRKLFIRGLGW-DTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNL 145 (425)
Q Consensus 68 ~~~~~lfV~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~ 145 (425)
...++|||+||++ .+|+++|+++|+.||.|.+|+|++++ +|||||+|.+.++|++||+.++ ..|.++.|.|.+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 3567999999998 69999999999999999999999873 6899999999999999999888 889999999998
Q ss_pred cccCCCCCCCC-----------------------C------CCCcccceEEEeecCCcccHHHHHHHHhhcCC--ceeee
Q 014397 146 AVAGNSGNSTN-----------------------N------PVDVSLRKIFVGNVPNDMSADKLLAHFACYGE--IEEGP 194 (425)
Q Consensus 146 ~~~~~~~~~~~-----------------------~------~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~--v~~v~ 194 (425)
+.......... . .....+++|||.|||+++|+++|+++|++||. |+.|+
T Consensus 348 s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik 427 (481)
T TIGR01649 348 SKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFK 427 (481)
T ss_pred cccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEE
Confidence 75432110000 0 00124578999999999999999999999998 88888
Q ss_pred eeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeE------EEEEEcccC
Q 014397 195 LGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQ------LNCRLADNK 242 (425)
Q Consensus 195 i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~------i~v~~a~~~ 242 (425)
+..+. +. .+++|||+|++.++|.+||..+ ++.|+++. |+|.+++++
T Consensus 428 ~~~~~-~~-~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 428 FFPKD-NE-RSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred EecCC-CC-cceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 86543 23 5789999999999999999997 58899885 899888754
No 23
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.92 E-value=3.3e-24 Score=219.03 Aligned_cols=220 Identities=19% Similarity=0.267 Sum_probs=160.9
Q ss_pred CCCCCCCCChHHHHHHHHhhchhhHHHH-HHHhhhccchhh--hhhhhcccCCCCCCeEEEcCCCCCCCHHHHHHHHhhc
Q 014397 18 DLESPNRLTPQDARKIVERLTSDQLLDV-LSSAVARHDDVL--ESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAY 94 (425)
Q Consensus 18 ~~~~~~~~~~e~~~~~~e~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~ 94 (425)
....++|.+.++|+++++. +...+... +........... ..........+..++|||+|||.++|+++|+++|+.|
T Consensus 132 g~afVeF~~~e~A~~Al~l-~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~ 210 (457)
T TIGR01622 132 GVAYVEFYDVESVIKALAL-TGQMLLGRPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPF 210 (457)
T ss_pred eEEEEEECCHHHHHHHHHh-CCCEECCeeeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhc
Confidence 3467888999999999973 33222211 100000000000 0001111122346899999999999999999999999
Q ss_pred CCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecccCCCCCCC------------------
Q 014397 95 GELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAVAGNSGNST------------------ 155 (425)
Q Consensus 95 G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~~~~~~~~~------------------ 155 (425)
|.|.+|.|+.++.+++++|||||+|.+.++|++||+.++ ..|.++.|.|.++.........
T Consensus 211 G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (457)
T TIGR01622 211 GDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLN 290 (457)
T ss_pred CCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCC
Confidence 999999999999889999999999999999999999888 8899999999995421100000
Q ss_pred --------------------------------------------------------------C--CCCCcccceEEEeec
Q 014397 156 --------------------------------------------------------------N--NPVDVSLRKIFVGNV 171 (425)
Q Consensus 156 --------------------------------------------------------------~--~~~~~~~~~l~V~nL 171 (425)
. .......++|+|.||
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~ 370 (457)
T TIGR01622 291 TEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNM 370 (457)
T ss_pred ccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecC
Confidence 0 001234577899999
Q ss_pred CCccc----------HHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEcc
Q 014397 172 PNDMS----------ADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLAD 240 (425)
Q Consensus 172 ~~~~t----------e~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a~ 240 (425)
....+ .+||+++|++||.|++|.|.. ..+.|++||+|+++++|++|++.| +..|+|+.|.|.+..
T Consensus 371 ~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~----~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~ 446 (457)
T TIGR01622 371 FDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDT----KNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVV 446 (457)
T ss_pred CCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeC----CCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEc
Confidence 54433 368999999999999998863 345799999999999999999997 599999999999886
Q ss_pred cC
Q 014397 241 NK 242 (425)
Q Consensus 241 ~~ 242 (425)
..
T Consensus 447 ~~ 448 (457)
T TIGR01622 447 ND 448 (457)
T ss_pred HH
Confidence 43
No 24
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.91 E-value=1.4e-24 Score=195.51 Aligned_cols=146 Identities=26% Similarity=0.426 Sum_probs=134.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecccCC
Q 014397 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAVAGN 150 (425)
Q Consensus 72 ~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~~~~ 150 (425)
+|||+|||..+++.+|+.+|++||+|++|.|+++ |+||..+++..|+.||..++ -+|++..|.|+.++.+.
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 5999999999999999999999999999999987 99999999999999999887 88999999998876642
Q ss_pred CCCCCCCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCcc
Q 014397 151 SGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTV 229 (425)
Q Consensus 151 ~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~ 229 (425)
..+++|+|+||.+.|+.++|++.|++||.|.+++|++| |+||.|+-.++|..||..+ +.+|
T Consensus 76 ----------k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~ 137 (346)
T KOG0109|consen 76 ----------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEF 137 (346)
T ss_pred ----------CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhccccccc
Confidence 34478999999999999999999999999999999865 9999999999999999997 6999
Q ss_pred CCeEEEEEEcccCC
Q 014397 230 DGKQLNCRLADNKK 243 (425)
Q Consensus 230 ~gr~i~v~~a~~~~ 243 (425)
+|++++|.+++.+.
T Consensus 138 ~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 138 QGKRMHVQLSTSRL 151 (346)
T ss_pred ccceeeeeeecccc
Confidence 99999999987653
No 25
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=6.6e-24 Score=196.07 Aligned_cols=173 Identities=19% Similarity=0.359 Sum_probs=151.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecc
Q 014397 69 TQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAV 147 (425)
Q Consensus 69 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~ 147 (425)
--++|||+.|.+++.|+.|+..|..||+|++|.+.+|+.|++.||||||+|+-+|.|+.|++.++ ..+.||.|.|....
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999 77889999988544
Q ss_pred cCCCCCCC---CCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhc
Q 014397 148 AGNSGNST---NNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVD 224 (425)
Q Consensus 148 ~~~~~~~~---~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~ 224 (425)
.-...... ..++.....+|||..++.+++|+||+..|+.||+|+.|.+.+++.....|||+||+|.+..+...||..
T Consensus 192 NmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAias 271 (544)
T KOG0124|consen 192 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 271 (544)
T ss_pred CCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhh
Confidence 32221110 011223457899999999999999999999999999999999998889999999999999999999999
Q ss_pred CC-CccCCeEEEEEEccc
Q 014397 225 PI-KTVDGKQLNCRLADN 241 (425)
Q Consensus 225 ~~-~~~~gr~i~v~~a~~ 241 (425)
+| ..|.|+.|+|-.+..
T Consensus 272 MNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 272 MNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred cchhhcccceEecccccC
Confidence 87 899999999987743
No 26
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=8.9e-24 Score=199.38 Aligned_cols=174 Identities=24% Similarity=0.415 Sum_probs=150.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC--CCcC--CceEEE
Q 014397 68 PTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS--KKID--GRVTVT 143 (425)
Q Consensus 68 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~--~~~~--gr~~~v 143 (425)
...++|||+.|++.+||.||+++|++||.|++|.|++|. .+.|||||||+|.+.|.|..||+.++ .++. ..+|+|
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 457889999999999999999999999999999999995 89999999999999999999999998 4454 458999
Q ss_pred EecccCCCCCCC--------------------------------------------------------------------
Q 014397 144 NLAVAGNSGNST-------------------------------------------------------------------- 155 (425)
Q Consensus 144 ~~~~~~~~~~~~-------------------------------------------------------------------- 155 (425)
+|+...++...+
T Consensus 201 kFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~ 280 (510)
T KOG0144|consen 201 KFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAAL 280 (510)
T ss_pred EecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHh
Confidence 998776554321
Q ss_pred --------------------------------------------------------------------------------
Q 014397 156 -------------------------------------------------------------------------------- 155 (425)
Q Consensus 156 -------------------------------------------------------------------------------- 155 (425)
T Consensus 281 ~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~ 360 (510)
T KOG0144|consen 281 AAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPV 360 (510)
T ss_pred hhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCcc
Confidence
Q ss_pred --------------------------------------------------------CCCCCcccceEEEeecCCcccHHH
Q 014397 156 --------------------------------------------------------NNPVDVSLRKIFVGNVPNDMSADK 179 (425)
Q Consensus 156 --------------------------------------------------------~~~~~~~~~~l~V~nL~~~~te~~ 179 (425)
...+..+...|||.+||.+.-+.+
T Consensus 361 aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~ 440 (510)
T KOG0144|consen 361 AASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQD 440 (510)
T ss_pred cccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHH
Confidence 000011122399999999999999
Q ss_pred HHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCC-CccCCeEEEEEEcccC
Q 014397 180 LLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPI-KTVDGKQLNCRLADNK 242 (425)
Q Consensus 180 L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~-~~~~gr~i~v~~a~~~ 242 (425)
|-..|..||.|+..++..|+.|+-+|+|+||.|++..+|.+||..++ ..|..++++|.....+
T Consensus 441 l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~ 504 (510)
T KOG0144|consen 441 LIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDR 504 (510)
T ss_pred HHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeecc
Confidence 99999999999999999999999999999999999999999999975 8899999999887654
No 27
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=3.3e-23 Score=202.33 Aligned_cols=209 Identities=24% Similarity=0.362 Sum_probs=175.3
Q ss_pred ccCCCCCCCCChHHHHHHHHhhchhhHHHHHHHhhhccchhhhhhhhcccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcC
Q 014397 16 LSDLESPNRLTPQDARKIVERLTSDQLLDVLSSAVARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYG 95 (425)
Q Consensus 16 ~~~~~~~~~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G 95 (425)
......++|.++++|++++++++...+....... .. .+.++ ..|||.||+.++|..+|.++|+.||
T Consensus 36 slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~ri-------m~-----s~rd~--~~~~i~nl~~~~~~~~~~d~f~~~g 101 (369)
T KOG0123|consen 36 SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRI-------MW-----SQRDP--SLVFIKNLDESIDNKSLYDTFSEFG 101 (369)
T ss_pred ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEe-------eh-----hccCC--ceeeecCCCcccCcHHHHHHHHhhc
Confidence 4445778999999999999999988875421110 00 11111 1299999999999999999999999
Q ss_pred CeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecccCCCCCCCCCCCCcccceEEEeecCCc
Q 014397 96 ELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPND 174 (425)
Q Consensus 96 ~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~ 174 (425)
+|++|++..+. .+ ++|| ||+|+++++|++||+.++ ..+.++.+.|-....+.+......+.....+.++|.+++.+
T Consensus 102 ~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~ 178 (369)
T KOG0123|consen 102 NILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEED 178 (369)
T ss_pred CeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccchhhhhhhhheeccccc
Confidence 99999999995 55 9999 999999999999999998 77889999998887776655444444556678999999999
Q ss_pred ccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCC-CccCCeEEEEEEcccC
Q 014397 175 MSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPI-KTVDGKQLNCRLADNK 242 (425)
Q Consensus 175 ~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~-~~~~gr~i~v~~a~~~ 242 (425)
+++++|.++|+.+|.|..+.|+.+ ..+++++|+||.|+++++|..|++.++ ..+.+..+.|..+..+
T Consensus 179 ~~~~~l~~~f~~~g~i~s~~v~~~-~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk 246 (369)
T KOG0123|consen 179 STDEELKDLFSAYGSITSVAVMRD-SIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKK 246 (369)
T ss_pred cchHHHHHhhcccCcceEEEEeec-CCCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccc
Confidence 999999999999999999999988 467799999999999999999999975 7778889999888664
No 28
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.1e-22 Score=198.54 Aligned_cols=154 Identities=23% Similarity=0.361 Sum_probs=141.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecccC
Q 014397 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAVAG 149 (425)
Q Consensus 71 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~~~ 149 (425)
..|||+ +++||..|.++|+.+|+|++++|++|. | |.|||||.|.++++|++||+.++ ..+.++++++-|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 358999 899999999999999999999999997 6 99999999999999999999999 8899999999999764
Q ss_pred CCCCCCCCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCc
Q 014397 150 NSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKT 228 (425)
Q Consensus 150 ~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~ 228 (425)
... |||.||+.++|..+|.++|+.||.|.+|+|.+|. ++ ++|| ||+|+++++|++||+++ +..
T Consensus 76 ~~~-------------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~l 139 (369)
T KOG0123|consen 76 PSL-------------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGML 139 (369)
T ss_pred Cce-------------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcc
Confidence 432 9999999999999999999999999999999995 45 9999 99999999999999996 588
Q ss_pred cCCeEEEEEEcccCCCCC
Q 014397 229 VDGKQLNCRLADNKKAKP 246 (425)
Q Consensus 229 ~~gr~i~v~~a~~~~~~~ 246 (425)
+++++|.|.....+..+.
T Consensus 140 l~~kki~vg~~~~~~er~ 157 (369)
T KOG0123|consen 140 LNGKKIYVGLFERKEERE 157 (369)
T ss_pred cCCCeeEEeeccchhhhc
Confidence 999999999887766544
No 29
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=8e-23 Score=181.85 Aligned_cols=179 Identities=23% Similarity=0.376 Sum_probs=153.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC--CCcCC--ceE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS--KKIDG--RVT 141 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~--~~~~g--r~~ 141 (425)
..-+.++|||+.|.+.-.|+|++.+|..||+|++|.+++.. ++.+||||||.|.+..+|..||..++ ..+.| ..+
T Consensus 15 rg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSL 93 (371)
T KOG0146|consen 15 RGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSL 93 (371)
T ss_pred CCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccce
Confidence 34467889999999999999999999999999999999986 89999999999999999999999988 55555 477
Q ss_pred EEEecccCCCCCCC------------------------------------------------------------------
Q 014397 142 VTNLAVAGNSGNST------------------------------------------------------------------ 155 (425)
Q Consensus 142 ~v~~~~~~~~~~~~------------------------------------------------------------------ 155 (425)
+|+++...+++...
T Consensus 94 VVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~ang 173 (371)
T KOG0146|consen 94 VVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANG 173 (371)
T ss_pred EEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcc
Confidence 88887665543211
Q ss_pred --------------------------------------------------------------------------------
Q 014397 156 -------------------------------------------------------------------------------- 155 (425)
Q Consensus 156 -------------------------------------------------------------------------------- 155 (425)
T Consensus 174 l~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y 253 (371)
T KOG0146|consen 174 LAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQY 253 (371)
T ss_pred cccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHH
Confidence
Q ss_pred ------------------------CCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEE
Q 014397 156 ------------------------NNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFV 211 (425)
Q Consensus 156 ------------------------~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~ 211 (425)
...+..+.+.|||-.||.+..+.||.+.|-.||.|.+.+|+.|+.|..||+|+||.
T Consensus 254 ~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVS 333 (371)
T KOG0146|consen 254 AAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVS 333 (371)
T ss_pred hhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEe
Confidence 00112234569999999999999999999999999999999999999999999999
Q ss_pred eCCHHHHHHHHhcCC-CccCCeEEEEEEcccCCCC
Q 014397 212 YKTAEGAQAALVDPI-KTVDGKQLNCRLADNKKAK 245 (425)
Q Consensus 212 F~~~~~A~~A~~~~~-~~~~gr~i~v~~a~~~~~~ 245 (425)
|+++.+|++||..+| ..|.=++|+|.+.+++.+.
T Consensus 334 fDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdan 368 (371)
T KOG0146|consen 334 FDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDAN 368 (371)
T ss_pred cCCchhHHHHHHHhcchhhhhhhhhhhhcCccccC
Confidence 999999999999975 8888899999888877653
No 30
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.87 E-value=8.6e-22 Score=196.69 Aligned_cols=173 Identities=24% Similarity=0.365 Sum_probs=147.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCC---CCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEe
Q 014397 70 QRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKAT---GKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNL 145 (425)
Q Consensus 70 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~---g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~ 145 (425)
.++|||.||++++|.++|.++|...|.|.+|.|...+.. -.|.||+||+|.++++|+.|++.++ +.++|+.|.+.+
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 344999999999999999999999999999988765422 2477999999999999999999999 999999999999
Q ss_pred cccCCCCC-CCCCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhc
Q 014397 146 AVAGNSGN-STNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVD 224 (425)
Q Consensus 146 ~~~~~~~~-~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~ 224 (425)
+....... ..........++|+|+|||+..+..+|+++|..||.|++|+|+.....+.++|||||+|-++++|.+|+..
T Consensus 595 S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~a 674 (725)
T KOG0110|consen 595 SENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDA 674 (725)
T ss_pred ccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHh
Confidence 87222111 11222333467999999999999999999999999999999998766677899999999999999999999
Q ss_pred C-CCccCCeEEEEEEcccC
Q 014397 225 P-IKTVDGKQLNCRLADNK 242 (425)
Q Consensus 225 ~-~~~~~gr~i~v~~a~~~ 242 (425)
+ .+.|-||.|.++|+...
T Consensus 675 l~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 675 LGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred hcccceechhhheehhccc
Confidence 7 58899999999999654
No 31
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.86 E-value=2.2e-19 Score=172.98 Aligned_cols=172 Identities=18% Similarity=0.278 Sum_probs=139.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEEec
Q 014397 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLA 146 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~~~ 146 (425)
......|-+++|||++|++||++||+.| .|+++++.+ .+++..|-|||+|+++|++++||++....+..|.|.|-.+
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTA 83 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEec--cCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEcc
Confidence 3445668999999999999999999999 577766655 4799999999999999999999999888999999999876
Q ss_pred ccCCCCC--CC-CCCCCcccceEEEeecCCcccHHHHHHHHhhcCCcee-eeeeccCCCCCcceEEEEEeCCHHHHHHHH
Q 014397 147 VAGNSGN--ST-NNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEE-GPLGFDKQTGKPKGFALFVYKTAEGAQAAL 222 (425)
Q Consensus 147 ~~~~~~~--~~-~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~-v~i~~d~~~g~~kG~afV~F~~~~~A~~A~ 222 (425)
....... +. .+........|.++.|||.||++||.+||+..-.|.. |.++.| ..+++.|-|||.|++.+.|++||
T Consensus 84 ~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al 162 (510)
T KOG4211|consen 84 GGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIAL 162 (510)
T ss_pred CCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHH
Confidence 4432211 11 1112235567999999999999999999998865555 344455 57889999999999999999999
Q ss_pred hcCCCccCCeEEEEEEcccC
Q 014397 223 VDPIKTVDGKQLNCRLADNK 242 (425)
Q Consensus 223 ~~~~~~~~gr~i~v~~a~~~ 242 (425)
..+...|.-|-|+|-.+...
T Consensus 163 ~rhre~iGhRYIEvF~Ss~~ 182 (510)
T KOG4211|consen 163 GRHRENIGHRYIEVFRSSRA 182 (510)
T ss_pred HHHHHhhccceEEeehhHHH
Confidence 99889999999999877543
No 32
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=1.1e-21 Score=175.12 Aligned_cols=140 Identities=25% Similarity=0.428 Sum_probs=118.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEEec
Q 014397 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLA 146 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~~~ 146 (425)
+...+||||+||+.++||+-|..||++.|.|.+|+||.| .+.|.|+
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~----------------------------------e~~v~wa 48 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD----------------------------------ELKVNWA 48 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh----------------------------------hhccccc
Confidence 345689999999999999999999999999999999987 1223333
Q ss_pred ccCCCCCCCCCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCC
Q 014397 147 VAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPI 226 (425)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~ 226 (425)
... .. .+..+....-.+||+.|..+++.++|++.|.+||+|.+++|++|..|+|+|||+||.|-+.++|+.||+.|+
T Consensus 49 ~~p--~n-Qsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~Mn 125 (321)
T KOG0148|consen 49 TAP--GN-QSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMN 125 (321)
T ss_pred cCc--cc-CCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhC
Confidence 222 00 111222224569999999999999999999999999999999999999999999999999999999999985
Q ss_pred -CccCCeEEEEEEcccCC
Q 014397 227 -KTVDGKQLNCRLADNKK 243 (425)
Q Consensus 227 -~~~~gr~i~v~~a~~~~ 243 (425)
..|..|.|+-.||++|.
T Consensus 126 GqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 126 GQWLGRRTIRTNWATRKP 143 (321)
T ss_pred CeeeccceeeccccccCc
Confidence 99999999999998876
No 33
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.86 E-value=2.6e-22 Score=195.46 Aligned_cols=183 Identities=23% Similarity=0.409 Sum_probs=157.2
Q ss_pred hhcccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCce
Q 014397 61 RSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRV 140 (425)
Q Consensus 61 ~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~ 140 (425)
+.+...+...++||+-.|+..+++.+|.+||+.+|+|.+|++|.|+.+.++||.|||+|.+.+.+..||....+.+.+.+
T Consensus 170 ~~l~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~p 249 (549)
T KOG0147|consen 170 RILSPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVP 249 (549)
T ss_pred ccCCchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCce
Confidence 33445566789999999999999999999999999999999999999999999999999999999999988889999999
Q ss_pred EEEEecccCCCCCCC-C-----CCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCC
Q 014397 141 TVTNLAVAGNSGNST-N-----NPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKT 214 (425)
Q Consensus 141 ~~v~~~~~~~~~~~~-~-----~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~ 214 (425)
+.|+.....+..... . .....+...|||+||++++|+++|+.+|++||.|+.|.+.+|.+||.++||+||+|.+
T Consensus 250 v~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~ 329 (549)
T KOG0147|consen 250 VIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVN 329 (549)
T ss_pred eEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEec
Confidence 999876433221110 0 0111233449999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC-CCccCCeEEEEEEcccCC
Q 014397 215 AEGAQAALVDP-IKTVDGKQLNCRLADNKK 243 (425)
Q Consensus 215 ~~~A~~A~~~~-~~~~~gr~i~v~~a~~~~ 243 (425)
.++|++|++++ +.+|-|+.|+|...+.+.
T Consensus 330 ~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 330 KEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred HHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 99999999996 599999999998876543
No 34
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.85 E-value=2.8e-20 Score=190.10 Aligned_cols=132 Identities=14% Similarity=0.252 Sum_probs=100.6
Q ss_pred cCCCCCCCCChHHHHHHHHhhchhhHHHHHHHhhhc--cchhhhhhhhcccCCCCCCeEEEcCCCCCCCHHHHHHHHhhc
Q 014397 17 SDLESPNRLTPQDARKIVERLTSDQLLDVLSSAVAR--HDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAY 94 (425)
Q Consensus 17 ~~~~~~~~~~~e~~~~~~e~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~ 94 (425)
.....++|.+.++++++++.++...+.......... ..................++|||+|||+++++++|+++|+.|
T Consensus 149 kGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~F 228 (612)
T TIGR01645 149 KGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAF 228 (612)
T ss_pred CCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhc
Confidence 344678899999999999998876654321111100 000000001111223345789999999999999999999999
Q ss_pred CCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEeccc
Q 014397 95 GELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAVA 148 (425)
Q Consensus 95 G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~~ 148 (425)
|+|++|+|++++.++++||||||+|.+.++|.+||+.++ ..|.|+.|.|.++..
T Consensus 229 G~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 229 GEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred CCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 999999999999899999999999999999999999999 889999999977653
No 35
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=1.5e-18 Score=146.84 Aligned_cols=160 Identities=19% Similarity=0.274 Sum_probs=131.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecc
Q 014397 69 TQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAV 147 (425)
Q Consensus 69 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~ 147 (425)
..++|||+|||.++.|.+|+++|.+||.|.+|.+... ...-.||||+|+++.+|+.||.--+ -.+++..|.|+++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 5688999999999999999999999999999887433 2345699999999999999999888 89999999999987
Q ss_pred cCCCCCCC------------------CCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEE
Q 014397 148 AGNSGNST------------------NNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFAL 209 (425)
Q Consensus 148 ~~~~~~~~------------------~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~af 209 (425)
........ -++...+...|.|..||.+.+|+||+++..+.|+|....+.+| |++.
T Consensus 82 ggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~Gv 154 (241)
T KOG0105|consen 82 GGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGV 154 (241)
T ss_pred CCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------ccee
Confidence 65422211 2344455678999999999999999999999999999999877 5889
Q ss_pred EEeCCHHHHHHHHhcCC-Ccc--CCeEEEEEE
Q 014397 210 FVYKTAEGAQAALVDPI-KTV--DGKQLNCRL 238 (425)
Q Consensus 210 V~F~~~~~A~~A~~~~~-~~~--~gr~i~v~~ 238 (425)
|+|...|+.+-||.++. ..+ .|.+..+.+
T Consensus 155 V~~~r~eDMkYAvr~ld~~~~~seGe~~yirv 186 (241)
T KOG0105|consen 155 VEYLRKEDMKYAVRKLDDQKFRSEGETAYIRV 186 (241)
T ss_pred eeeeehhhHHHHHHhhccccccCcCcEeeEEe
Confidence 99999999999999863 333 444444443
No 36
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.80 E-value=1.3e-18 Score=148.60 Aligned_cols=87 Identities=22% Similarity=0.490 Sum_probs=79.8
Q ss_pred CcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEE
Q 014397 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRL 238 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~ 238 (425)
....++|||+||++++||++|+++|++||+|++|+|+.|+.+++++|||||+|+++++|++||+.+ ++.|+++.|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 345678999999999999999999999999999999999999999999999999999999999986 5899999999999
Q ss_pred cccCCCCC
Q 014397 239 ADNKKAKP 246 (425)
Q Consensus 239 a~~~~~~~ 246 (425)
++.+...+
T Consensus 111 a~~~~~~~ 118 (144)
T PLN03134 111 ANDRPSAP 118 (144)
T ss_pred CCcCCCCC
Confidence 97765543
No 37
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.79 E-value=3.6e-18 Score=164.64 Aligned_cols=220 Identities=14% Similarity=0.157 Sum_probs=163.7
Q ss_pred CCCCCCCCChHHHHHHHHhhchhhHHHHHHHhhhccchhhhhhhhcccCC-CCCCeEEEcCCCCCCCHHHHHHHHhhcCC
Q 014397 18 DLESPNRLTPQDARKIVERLTSDQLLDVLSSAVARHDDVLESVRSIADAD-PTQRKLFIRGLGWDTTTEGLRSIFSAYGE 96 (425)
Q Consensus 18 ~~~~~~~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lfV~nLp~~~te~~l~~~F~~~G~ 96 (425)
..+.+++.++|++++++++.....-...++.+.....+..+..+...... ....+|-+++||+.||++||.+||+.+-.
T Consensus 50 GeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~I 129 (510)
T KOG4211|consen 50 GEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEI 129 (510)
T ss_pred cceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcc
Confidence 34668888999999999988887777777777666555544444443222 45678999999999999999999999977
Q ss_pred eeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEEecccCCCCCCC---------------------
Q 014397 97 LEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNST--------------------- 155 (425)
Q Consensus 97 i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~~~~~~~~~~~~--------------------- 155 (425)
|....++.....+++.|-|||+|++.++|++||..+...|..|.|.|..+.........
T Consensus 130 v~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg 209 (510)
T KOG4211|consen 130 VPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRG 209 (510)
T ss_pred cccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCcc
Confidence 66644343334788999999999999999999999888888888888554211000000
Q ss_pred -------------------------------------------------CCCC---------------CcccceEEEeec
Q 014397 156 -------------------------------------------------NNPV---------------DVSLRKIFVGNV 171 (425)
Q Consensus 156 -------------------------------------------------~~~~---------------~~~~~~l~V~nL 171 (425)
.... ......++.+.|
T Consensus 210 ~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGl 289 (510)
T KOG4211|consen 210 GYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGL 289 (510)
T ss_pred ccccccccCCCccccccccccCCccccccCccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCC
Confidence 0000 001145888999
Q ss_pred CCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEEEc
Q 014397 172 PNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA 239 (425)
Q Consensus 172 ~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~~a 239 (425)
|+..++.+|.++|+..-.+ .|.|-.. .+++..|-|+|+|.+.++|..|+.+.+..+..+-|+.-..
T Consensus 290 py~a~~~di~nfFspl~p~-~v~i~ig-~dGr~TGEAdveF~t~edav~Amskd~anm~hrYVElFln 355 (510)
T KOG4211|consen 290 PYDATENDIANFFSPLNPY-RVHIEIG-PDGRATGEADVEFATGEDAVGAMGKDGANMGHRYVELFLN 355 (510)
T ss_pred CccCCCcchhhhcCCCCce-eEEEEeC-CCCccCCcceeecccchhhHhhhccCCcccCcceeeeccc
Confidence 9999999999999987554 5555554 5899999999999999999999999777777777665443
No 38
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.72 E-value=5.2e-17 Score=138.63 Aligned_cols=84 Identities=37% Similarity=0.663 Sum_probs=78.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEe
Q 014397 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNL 145 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~ 145 (425)
....++|||+|||+++||++|+++|++||+|++|+|+.|+.+++++|||||+|+++++|++||+.++ ..|.++.|.|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 4456789999999999999999999999999999999999999999999999999999999999887 889999999999
Q ss_pred cccCC
Q 014397 146 AVAGN 150 (425)
Q Consensus 146 ~~~~~ 150 (425)
+..+.
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 86543
No 39
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.72 E-value=1.5e-16 Score=150.68 Aligned_cols=171 Identities=22% Similarity=0.367 Sum_probs=139.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhh-cCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEE
Q 014397 67 DPTQRKLFIRGLGWDTTTEGLRSIFSA-YGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTN 144 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~ 144 (425)
....+.|||.|||+++.+++|++||.+ .|+|+-|.++.|. +++++|||.|||+++|.++||++.++ .++.+|.|+|+
T Consensus 41 ~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vK 119 (608)
T KOG4212|consen 41 AARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVK 119 (608)
T ss_pred ccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEe
Confidence 334566999999999999999999965 7999999999995 89999999999999999999999999 89999999986
Q ss_pred ecccCCCCCCC---------------------------------------------------------------------
Q 014397 145 LAVAGNSGNST--------------------------------------------------------------------- 155 (425)
Q Consensus 145 ~~~~~~~~~~~--------------------------------------------------------------------- 155 (425)
-.......+..
T Consensus 120 Ed~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl 199 (608)
T KOG4212|consen 120 EDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGL 199 (608)
T ss_pred ccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccc
Confidence 54321100000
Q ss_pred -----C---CCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCC-
Q 014397 156 -----N---NPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPI- 226 (425)
Q Consensus 156 -----~---~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~- 226 (425)
. ........++||.||.+.+..+.|++.|.-.|.|+.|.+..|++ +.++|||.++|+.+-.|.+||..++
T Consensus 200 ~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 200 SASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred hhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccc-cccCCeeEEEecchHHHHHHHHhhcc
Confidence 0 00112235699999999999999999999999999999999975 6999999999999999999999875
Q ss_pred CccCCeEEEEEEc
Q 014397 227 KTVDGKQLNCRLA 239 (425)
Q Consensus 227 ~~~~gr~i~v~~a 239 (425)
.-+..++..+++.
T Consensus 279 ~g~~~~~~~~Rl~ 291 (608)
T KOG4212|consen 279 QGLFDRRMTVRLD 291 (608)
T ss_pred CCCccccceeecc
Confidence 4555666666653
No 40
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.70 E-value=5.9e-17 Score=157.67 Aligned_cols=123 Identities=18% Similarity=0.274 Sum_probs=97.0
Q ss_pred CCCCCCCCChHHHHHHHHhhchhhHHHHHHHhhhccchhhhhhhhcccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCe
Q 014397 18 DLESPNRLTPQDARKIVERLTSDQLLDVLSSAVARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGEL 97 (425)
Q Consensus 18 ~~~~~~~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i 97 (425)
....|+|.++++|+++++.++...+....... .. ..........++|||+|||+++||++|+++|++||+|
T Consensus 150 GyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V-~~--------a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V 220 (346)
T TIGR01659 150 GYAFVDFGSEADSQRAIKNLNGITVRNKRLKV-SY--------ARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQI 220 (346)
T ss_pred cEEEEEEccHHHHHHHHHHcCCCccCCceeee-ec--------ccccccccccceeEEeCCCCcccHHHHHHHHHhcCCE
Confidence 34668889999999999988876664321110 00 0011123346789999999999999999999999999
Q ss_pred eEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCC--ceEEEEecccC
Q 014397 98 EEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDG--RVTVTNLAVAG 149 (425)
Q Consensus 98 ~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~g--r~~~v~~~~~~ 149 (425)
++|+|++|+.+++++|||||+|.+.++|++||+.++ ..+.+ +.|.|.++...
T Consensus 221 ~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 221 VQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred EEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcc
Confidence 999999999999999999999999999999999998 55655 57777777653
No 41
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.70 E-value=4e-17 Score=159.46 Aligned_cols=167 Identities=20% Similarity=0.349 Sum_probs=131.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecccC
Q 014397 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAVAG 149 (425)
Q Consensus 71 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~~~ 149 (425)
..|||+||.+.+|+++|+.+|+.||.|+.|.+++|..|+++|||+||+|.+.++|++|++.++ .+|.|+.|.|......
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 339999999999999999999999999999999998899999999999999999999999988 8899999988654332
Q ss_pred CCCCCC----------------------------------------------------------------CCCCC-----
Q 014397 150 NSGNST----------------------------------------------------------------NNPVD----- 160 (425)
Q Consensus 150 ~~~~~~----------------------------------------------------------------~~~~~----- 160 (425)
...... .....
T Consensus 359 ~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~ 438 (549)
T KOG0147|consen 359 VDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPA 438 (549)
T ss_pred cccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccc
Confidence 211100 00011
Q ss_pred --cccceEEEeecCCc--cc--------HHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CC
Q 014397 161 --VSLRKIFVGNVPND--MS--------ADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IK 227 (425)
Q Consensus 161 --~~~~~l~V~nL~~~--~t--------e~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~ 227 (425)
..+.++.|.|+=.. .| .|||.+.+.+||.|..|.|-++ +-|+.||.|.+.++|.+|+..+ ..
T Consensus 439 ~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~alhgr 513 (549)
T KOG0147|consen 439 FDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKALHGR 513 (549)
T ss_pred cCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHHHhhh
Confidence 23445556665211 11 3667788899999988877433 2399999999999999999997 59
Q ss_pred ccCCeEEEEEEcccC
Q 014397 228 TVDGKQLNCRLADNK 242 (425)
Q Consensus 228 ~~~gr~i~v~~a~~~ 242 (425)
+|.++.|...+....
T Consensus 514 WF~gr~Ita~~~~~~ 528 (549)
T KOG0147|consen 514 WFAGRMITAKYLPLE 528 (549)
T ss_pred hhccceeEEEEeehh
Confidence 999999999887543
No 42
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.70 E-value=6.6e-16 Score=136.00 Aligned_cols=163 Identities=19% Similarity=0.269 Sum_probs=130.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHH----HHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEE
Q 014397 69 TQRKLFIRGLGWDTTTEGLRS----IFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVT 143 (425)
Q Consensus 69 ~~~~lfV~nLp~~~te~~l~~----~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v 143 (425)
.+.||||.||+..+..++|+. +|++||+|.+|...+ +.+.+|-|||.|.+.+.|..|+..++ ..+.++++.+
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 344999999999999999888 999999999887764 67899999999999999999999998 8889999999
Q ss_pred EecccCCCCCCCC------------------------------------------CCCCcccceEEEeecCCcccHHHHH
Q 014397 144 NLAVAGNSGNSTN------------------------------------------NPVDVSLRKIFVGNVPNDMSADKLL 181 (425)
Q Consensus 144 ~~~~~~~~~~~~~------------------------------------------~~~~~~~~~l~V~nL~~~~te~~L~ 181 (425)
+++..+...-... .........||+.|||..++.+.|.
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~ 164 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLS 164 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHH
Confidence 8876543221110 0113345679999999999999999
Q ss_pred HHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccC-CeEEEEEEc
Q 014397 182 AHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVD-GKQLNCRLA 239 (425)
Q Consensus 182 ~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~-gr~i~v~~a 239 (425)
.+|++|.-.++|+++..+ ++.|||+|.+...|..|...+ +..|- ..++.|.++
T Consensus 165 ~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 165 DLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred HHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 999999999999988654 679999999999888887765 23332 556666554
No 43
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.69 E-value=4.2e-17 Score=143.79 Aligned_cols=83 Identities=36% Similarity=0.600 Sum_probs=79.0
Q ss_pred CCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEEE
Q 014397 159 VDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRL 238 (425)
Q Consensus 159 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~~ 238 (425)
.+...++|||++|+|.+++|+|+++|++||+|+++.|+.|+.+++||||+||+|.|.++|++|++..+-.||||+..|.+
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnl 87 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNL 87 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccch
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 014397 239 ADN 241 (425)
Q Consensus 239 a~~ 241 (425)
|..
T Consensus 88 A~l 90 (247)
T KOG0149|consen 88 ASL 90 (247)
T ss_pred hhh
Confidence 865
No 44
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.67 E-value=1.1e-16 Score=141.18 Aligned_cols=84 Identities=51% Similarity=0.846 Sum_probs=79.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEEe
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNL 145 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~~ 145 (425)
.|...++|||++|+|+++.++|+++|++||+|+++.||.|+.+++||||+||+|.+.|+|++|++..+-.|+||...+++
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnl 87 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNL 87 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccch
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 014397 146 AVAG 149 (425)
Q Consensus 146 ~~~~ 149 (425)
+...
T Consensus 88 A~lg 91 (247)
T KOG0149|consen 88 ASLG 91 (247)
T ss_pred hhhc
Confidence 8763
No 45
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.66 E-value=1.1e-15 Score=144.97 Aligned_cols=71 Identities=23% Similarity=0.326 Sum_probs=65.3
Q ss_pred ceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEc
Q 014397 164 RKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLA 239 (425)
Q Consensus 164 ~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a 239 (425)
++|+|+|||+++||+.|++-|..||.|+.++|+ ++++++| .|.|.++++|++|+..+ ...|+||.|+|.+.
T Consensus 537 ~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 537 CQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 459999999999999999999999999999994 5788888 99999999999999997 59999999999863
No 46
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=2.2e-16 Score=140.48 Aligned_cols=153 Identities=22% Similarity=0.371 Sum_probs=127.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecccC
Q 014397 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAVAG 149 (425)
Q Consensus 71 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~~~ 149 (425)
..|||++||+.+.+.+|++||..||.|.+|.+. .+|+||+|.+..+|..|+..++ ..|++..+.+.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 369999999999999999999999999998875 3489999999999999999998 7888888888888742
Q ss_pred CCC------------CCCCCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHH
Q 014397 150 NSG------------NSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEG 217 (425)
Q Consensus 150 ~~~------------~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~ 217 (425)
.-. .........+...|.|.+|+.++.+++|.++|.++|.+..+.+ .+.++||+|++.++
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~d 145 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQED 145 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhh
Confidence 111 1112223455678999999999999999999999999965544 25699999999999
Q ss_pred HHHHHhcC-CCccCCeEEEEEEc
Q 014397 218 AQAALVDP-IKTVDGKQLNCRLA 239 (425)
Q Consensus 218 A~~A~~~~-~~~~~gr~i~v~~a 239 (425)
|++||..+ +..++++.|.+...
T Consensus 146 a~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 146 AKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred hhhcchhccchhhcCceeeeccc
Confidence 99999997 58999999999443
No 47
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.65 E-value=6.8e-15 Score=136.24 Aligned_cols=169 Identities=18% Similarity=0.278 Sum_probs=134.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCee--------EEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcC
Q 014397 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELE--------EAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKID 137 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~ 137 (425)
+..++.|||.+||.++|.+++.++|++||.|. .|++.++. .|+.||-|+|.|-..++++.|++.++ ..+.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 44566699999999999999999999999876 38888885 69999999999999999999999999 8889
Q ss_pred CceEEEEecccCCCCCC------------------------------CCCCCCcccceEEEeecCC----ccc-------
Q 014397 138 GRVTVTNLAVAGNSGNS------------------------------TNNPVDVSLRKIFVGNVPN----DMS------- 176 (425)
Q Consensus 138 gr~~~v~~~~~~~~~~~------------------------------~~~~~~~~~~~l~V~nL~~----~~t------- 176 (425)
++.+.|+.+.-...... ..+......++|.|.||=. ..+
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 99999977642111000 0111223456788888822 122
Q ss_pred HHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEcc
Q 014397 177 ADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLAD 240 (425)
Q Consensus 177 e~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a~ 240 (425)
.++|++..++||.|.+|.|... .+.|.+.|.|.+.++|..||+.| +..|+||+|..+...
T Consensus 290 kedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWD 350 (382)
T ss_pred HHHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeC
Confidence 4667788899999999988643 34789999999999999999998 599999999987664
No 48
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=1.6e-15 Score=152.13 Aligned_cols=169 Identities=20% Similarity=0.271 Sum_probs=131.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTN 144 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~ 144 (425)
.+...+.|+|+|||..+..++|.++|..||+|..|.+. + .+. -|+|+|.+..+|.+|++.+. ..+...++.+.
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~-~G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle 454 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--P-GGT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLE 454 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecC--c-ccc---eeeeeecCccchHHHHHHhchhhhccCccccc
Confidence 45667889999999999999999999999999988443 2 222 49999999999999999988 55555555555
Q ss_pred ecccCCCC-------------CC-----C-------------CC-----------CCCcccceEEEeecCCcccHHHHHH
Q 014397 145 LAVAGNSG-------------NS-----T-------------NN-----------PVDVSLRKIFVGNVPNDMSADKLLA 182 (425)
Q Consensus 145 ~~~~~~~~-------------~~-----~-------------~~-----------~~~~~~~~l~V~nL~~~~te~~L~~ 182 (425)
|+...... .. . .. ......++|||.||++++|.++|..
T Consensus 455 ~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~ 534 (725)
T KOG0110|consen 455 WAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLED 534 (725)
T ss_pred cChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHH
Confidence 54221111 00 0 00 0001123399999999999999999
Q ss_pred HHhhcCCceeeeeeccCCC---CCcceEEEEEeCCHHHHHHHHhcCC-CccCCeEEEEEEcc
Q 014397 183 HFACYGEIEEGPLGFDKQT---GKPKGFALFVYKTAEGAQAALVDPI-KTVDGKQLNCRLAD 240 (425)
Q Consensus 183 ~F~~~G~v~~v~i~~d~~~---g~~kG~afV~F~~~~~A~~A~~~~~-~~~~gr~i~v~~a~ 240 (425)
+|...|.|..|.|...+.. -.|.||+||+|.++++|++|++.|+ +.|+|+.|.|+++.
T Consensus 535 ~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 535 LFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred HHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 9999999999988876532 1356999999999999999999985 99999999999998
No 49
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=1.1e-15 Score=138.88 Aligned_cols=98 Identities=30% Similarity=0.424 Sum_probs=87.5
Q ss_pred CCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEE
Q 014397 156 NNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQL 234 (425)
Q Consensus 156 ~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i 234 (425)
......+-++|||.-|+++++|.+|+..|+.||.|+.|+|+.|+.|++++|||||+|+++.+..+|.++. ...|+++.|
T Consensus 94 p~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri 173 (335)
T KOG0113|consen 94 PNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRI 173 (335)
T ss_pred CcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEE
Confidence 3445577899999999999999999999999999999999999999999999999999999999999996 699999999
Q ss_pred EEEEcccCCCCCCCCCCCC
Q 014397 235 NCRLADNKKAKPMGPDGGG 253 (425)
Q Consensus 235 ~v~~a~~~~~~~~~~~~~~ 253 (425)
.|.+...+..+.|-+..-+
T Consensus 174 ~VDvERgRTvkgW~PRRLG 192 (335)
T KOG0113|consen 174 LVDVERGRTVKGWLPRRLG 192 (335)
T ss_pred EEEeccccccccccccccc
Confidence 9999877766666555433
No 50
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=4.2e-15 Score=138.08 Aligned_cols=220 Identities=13% Similarity=0.189 Sum_probs=162.8
Q ss_pred CCCCCCChHHHHHHHHhhchhhHHHHHHHhh--hccchhhhhhhhcccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCe
Q 014397 20 ESPNRLTPQDARKIVERLTSDQLLDVLSSAV--ARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGEL 97 (425)
Q Consensus 20 ~~~~~~~~e~~~~~~e~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i 97 (425)
..+++.-+|.+.-++|.+|...+-....+.. ++.......+....+.....++|||..+.++++|+||+..|+.||+|
T Consensus 158 AFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I 237 (544)
T KOG0124|consen 158 AFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEI 237 (544)
T ss_pred EEEEEeCcHHHHHHHHHhccccccCccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcce
Confidence 6678888999999999999877654321111 11222223333444455677889999999999999999999999999
Q ss_pred eEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecccCCCCCCC---------------------
Q 014397 98 EEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAVAGNSGNST--------------------- 155 (425)
Q Consensus 98 ~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~~~~~~~~~--------------------- 155 (425)
+.|.+.+++.....|||+||+|.+..+...||..++ ..+.|+.++|-.++........
T Consensus 238 ~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAK 317 (544)
T KOG0124|consen 238 VKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAK 317 (544)
T ss_pred eeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHH
Confidence 999999999888999999999999999999999999 8899999888554332211000
Q ss_pred --------------------------------------------------------------------------------
Q 014397 156 -------------------------------------------------------------------------------- 155 (425)
Q Consensus 156 -------------------------------------------------------------------------------- 155 (425)
T Consensus 318 i~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~ 397 (544)
T KOG0124|consen 318 IMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGL 397 (544)
T ss_pred HHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhh
Confidence
Q ss_pred -----------------------------------------CCCCCcccceEEEeec--CCccc---HHHHHHHHhhcCC
Q 014397 156 -----------------------------------------NNPVDVSLRKIFVGNV--PNDMS---ADKLLAHFACYGE 189 (425)
Q Consensus 156 -----------------------------------------~~~~~~~~~~l~V~nL--~~~~t---e~~L~~~F~~~G~ 189 (425)
+......++.|.++|+ |.+++ +.+|.+.+.+||.
T Consensus 398 L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~ 477 (544)
T KOG0124|consen 398 LEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGA 477 (544)
T ss_pred cchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccc
Confidence 0001112233677777 44544 4678899999999
Q ss_pred ceeeeeeccCCCCCc----ceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEc
Q 014397 190 IEEGPLGFDKQTGKP----KGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLA 239 (425)
Q Consensus 190 v~~v~i~~d~~~g~~----kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a 239 (425)
|.+|.|...+++... -=--||+|....++.+|++.+ .+.|.||++..+.-
T Consensus 478 V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~VvAE~Y 532 (544)
T KOG0124|consen 478 VNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKVVAEVY 532 (544)
T ss_pred eeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCceeehhhh
Confidence 999999877655421 113799999999999999997 58999999876543
No 51
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.61 E-value=8.4e-15 Score=138.33 Aligned_cols=152 Identities=25% Similarity=0.430 Sum_probs=120.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEeccc
Q 014397 70 QRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAVA 148 (425)
Q Consensus 70 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~~ 148 (425)
.++|||+|||+++|+++|+++|..||.|..|.+..++.+++++|||||+|.+.++|..|++.++ ..|.++.+.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5899999999999999999999999999999999998899999999999999999999999999 999999999999542
Q ss_pred ----CCCCCC------------CCCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEe
Q 014397 149 ----GNSGNS------------TNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVY 212 (425)
Q Consensus 149 ----~~~~~~------------~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F 212 (425)
...... ...........+++.+++..++..++..+|..++.+..+.+...........+.++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 111110 0122234556799999999999999999999999997777765544333444444444
Q ss_pred CCHHHHHHH
Q 014397 213 KTAEGAQAA 221 (425)
Q Consensus 213 ~~~~~A~~A 221 (425)
.....+..+
T Consensus 275 ~~~~~~~~~ 283 (306)
T COG0724 275 EASKDALES 283 (306)
T ss_pred hHHHhhhhh
Confidence 444444444
No 52
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=4.2e-15 Score=131.63 Aligned_cols=83 Identities=28% Similarity=0.349 Sum_probs=78.5
Q ss_pred CcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCC-CccCCeEEEEEE
Q 014397 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPI-KTVDGKQLNCRL 238 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~-~~~~gr~i~v~~ 238 (425)
..+..+|.|.||+.+++|++|+++|.+||.|.+|.|.+|++||.+||||||+|++.++|.+||+.|+ +-++.-.|.|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 3467889999999999999999999999999999999999999999999999999999999999974 889999999999
Q ss_pred cccC
Q 014397 239 ADNK 242 (425)
Q Consensus 239 a~~~ 242 (425)
++++
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9875
No 53
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=8.5e-15 Score=133.08 Aligned_cols=83 Identities=35% Similarity=0.598 Sum_probs=77.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTN 144 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~ 144 (425)
...+-+||||+-|+++++|.+|+..|+.||+|+.|+|++|+.|++++|||||+|+++.+...|.+..+ ..|+++.|+|.
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999988 89999999998
Q ss_pred eccc
Q 014397 145 LAVA 148 (425)
Q Consensus 145 ~~~~ 148 (425)
+...
T Consensus 177 vERg 180 (335)
T KOG0113|consen 177 VERG 180 (335)
T ss_pred eccc
Confidence 7643
No 54
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=5.5e-15 Score=118.06 Aligned_cols=82 Identities=22% Similarity=0.347 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEe
Q 014397 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNL 145 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~ 145 (425)
..+++||||+||++.+||++|.++|+.+|+|..|.+-.|+.+....|||||+|.+.++|+.||+-++ ..++.+.|.+.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 3457899999999999999999999999999999999999999999999999999999999999998 889999999988
Q ss_pred ccc
Q 014397 146 AVA 148 (425)
Q Consensus 146 ~~~ 148 (425)
..-
T Consensus 113 D~G 115 (153)
T KOG0121|consen 113 DAG 115 (153)
T ss_pred ccc
Confidence 754
No 55
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.53 E-value=2.4e-14 Score=106.62 Aligned_cols=69 Identities=42% Similarity=0.674 Sum_probs=63.8
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEE
Q 014397 73 LFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTV 142 (425)
Q Consensus 73 lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~ 142 (425)
|||+|||.++|+++|+++|++||.|..+.++.+ .+++++++|||+|++.++|++|++.++ ..+.++.|.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 688999999999999999999999777 777777653
No 56
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.52 E-value=1.6e-13 Score=119.97 Aligned_cols=158 Identities=19% Similarity=0.238 Sum_probs=114.9
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEee-cCCCCCcccEEEEEecchHHHHHHHhcCC-CCc---CC
Q 014397 64 ADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVIL-DKATGKSKGYGFITFKHIDGAMLALKEPS-KKI---DG 138 (425)
Q Consensus 64 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~-~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~---~g 138 (425)
.+....-+||||.+||.++...||..+|..|--.+.+.+.. ++.....+-+|||+|.+..+|++|+..++ ..| .+
T Consensus 28 ~~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~ 107 (284)
T KOG1457|consen 28 ADEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETG 107 (284)
T ss_pred cccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccC
Confidence 34455679999999999999999999999987666665543 33334466899999999999999999998 333 45
Q ss_pred ceEEEEecccCCCCCCCC----------------------------------------------CC--------------
Q 014397 139 RVTVTNLAVAGNSGNSTN----------------------------------------------NP-------------- 158 (425)
Q Consensus 139 r~~~v~~~~~~~~~~~~~----------------------------------------------~~-------------- 158 (425)
..+.++++.......+.. ..
T Consensus 108 stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~ 187 (284)
T KOG1457|consen 108 STLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPD 187 (284)
T ss_pred ceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhh
Confidence 677777765432211110 00
Q ss_pred ------------------CCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHH
Q 014397 159 ------------------VDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQA 220 (425)
Q Consensus 159 ------------------~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~ 220 (425)
....+.+|||.||..+||||+|+.+|+.|--...++|... .| ...|||+|++.+.|..
T Consensus 188 ~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~ 263 (284)
T KOG1457|consen 188 SKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFEEIEQATD 263 (284)
T ss_pred hcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHHHHHHHHH
Confidence 0001235999999999999999999999966555555321 23 3479999999999999
Q ss_pred HHhcC
Q 014397 221 ALVDP 225 (425)
Q Consensus 221 A~~~~ 225 (425)
|+..+
T Consensus 264 am~~l 268 (284)
T KOG1457|consen 264 AMNHL 268 (284)
T ss_pred HHHHh
Confidence 98765
No 57
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.52 E-value=3.3e-14 Score=105.88 Aligned_cols=69 Identities=30% Similarity=0.626 Sum_probs=65.0
Q ss_pred EEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEE
Q 014397 166 IFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLN 235 (425)
Q Consensus 166 l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~ 235 (425)
|||+|||+++|+++|+++|++||.|..+.+..+ .+++++++|||+|++.++|++|++.+ +..+++++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999988 78899999999999999999999975 6899999885
No 58
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=5.5e-14 Score=124.58 Aligned_cols=81 Identities=23% Similarity=0.399 Sum_probs=76.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecc
Q 014397 69 TQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAV 147 (425)
Q Consensus 69 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~ 147 (425)
+.++|-|.||+.+++|++|++||.+||.|..|.|.+|++||.+||||||.|.+.++|.+||+.++ .-++.-.|.|+|+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 57789999999999999999999999999999999999999999999999999999999999999 77888899999987
Q ss_pred cC
Q 014397 148 AG 149 (425)
Q Consensus 148 ~~ 149 (425)
+.
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 53
No 59
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=5.5e-14 Score=112.42 Aligned_cols=80 Identities=20% Similarity=0.351 Sum_probs=74.7
Q ss_pred ccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEcc
Q 014397 162 SLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLAD 240 (425)
Q Consensus 162 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a~ 240 (425)
++.+|||+||++.++||+|.++|+++|+|+.|.+-.|+.+..+.|||||+|.+.++|+.||..+ ++.|+.+.|.+.|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 3478999999999999999999999999999999999999999999999999999999999996 699999999998874
Q ss_pred c
Q 014397 241 N 241 (425)
Q Consensus 241 ~ 241 (425)
-
T Consensus 115 G 115 (153)
T KOG0121|consen 115 G 115 (153)
T ss_pred c
Confidence 3
No 60
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.50 E-value=6.1e-14 Score=104.73 Aligned_cols=69 Identities=29% Similarity=0.560 Sum_probs=63.5
Q ss_pred EEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCC-CccCCeEEE
Q 014397 166 IFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPI-KTVDGKQLN 235 (425)
Q Consensus 166 l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~-~~~~gr~i~ 235 (425)
|||+|||+++++++|+++|+.||.|..|.+..+++ ++++++|||+|.++++|++|++.++ ..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999977 8999999999999999999999975 899999885
No 61
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.49 E-value=3.6e-14 Score=122.52 Aligned_cols=84 Identities=25% Similarity=0.369 Sum_probs=78.2
Q ss_pred CCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEE
Q 014397 157 NPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLN 235 (425)
Q Consensus 157 ~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~ 235 (425)
+++......|.|.||.+.||.++|+.+|++||.|-+|.|++|+.|..++|||||.|.+..+|+.|++.| ...|+|+.|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 344556788999999999999999999999999999999999999999999999999999999999998 5999999999
Q ss_pred EEEcc
Q 014397 236 CRLAD 240 (425)
Q Consensus 236 v~~a~ 240 (425)
|.+|+
T Consensus 87 Vq~ar 91 (256)
T KOG4207|consen 87 VQMAR 91 (256)
T ss_pred ehhhh
Confidence 99885
No 62
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.47 E-value=1.6e-13 Score=125.49 Aligned_cols=77 Identities=21% Similarity=0.297 Sum_probs=70.9
Q ss_pred cceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEEEcccC
Q 014397 163 LRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNK 242 (425)
Q Consensus 163 ~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~~a~~~ 242 (425)
.++|||+||++.+|+++|+++|+.||+|++|.|+.|.+ +++||||+|+++++|+.||..++..|.++.|.|.++..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 47899999999999999999999999999999998864 478999999999999999986689999999999998654
No 63
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.47 E-value=1e-13 Score=103.54 Aligned_cols=69 Identities=38% Similarity=0.606 Sum_probs=62.8
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEE
Q 014397 73 LFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTV 142 (425)
Q Consensus 73 lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~ 142 (425)
|||+|||+++|+++|+++|+.||.|..++++.++. ++++++|||+|.++++|++|++.++ ..+.++.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999976 8999999999999999999999998 888888763
No 64
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=1.5e-13 Score=115.97 Aligned_cols=76 Identities=26% Similarity=0.396 Sum_probs=70.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecc
Q 014397 69 TQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAV 147 (425)
Q Consensus 69 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~ 147 (425)
-.++|||+||+..+++.||+.+|..||+|.+|+|.+++ -|||||||+++.+|+.|+..|+ +.|++..+.|+++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 36789999999999999999999999999999998864 6799999999999999999999 99999999999987
Q ss_pred cC
Q 014397 148 AG 149 (425)
Q Consensus 148 ~~ 149 (425)
-.
T Consensus 84 G~ 85 (195)
T KOG0107|consen 84 GR 85 (195)
T ss_pred CC
Confidence 53
No 65
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.46 E-value=3.8e-13 Score=123.02 Aligned_cols=78 Identities=19% Similarity=0.244 Sum_probs=70.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEEecccC
Q 014397 70 QRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLAVAG 149 (425)
Q Consensus 70 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~~~~~~ 149 (425)
.++|||+|||+.+||++|+++|+.||+|++|.|+.++. +++||||+|+++++|+.||......|.++.|.|.++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 57899999999999999999999999999999998863 578999999999999999986569999999999998654
Q ss_pred C
Q 014397 150 N 150 (425)
Q Consensus 150 ~ 150 (425)
.
T Consensus 81 ~ 81 (260)
T PLN03120 81 Q 81 (260)
T ss_pred C
Confidence 3
No 66
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.45 E-value=2.1e-12 Score=122.13 Aligned_cols=163 Identities=20% Similarity=0.257 Sum_probs=130.2
Q ss_pred CCeEEEcCCC-CCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecc
Q 014397 70 QRKLFIRGLG-WDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAV 147 (425)
Q Consensus 70 ~~~lfV~nLp-~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~ 147 (425)
+..|.|.||. ..+|.+.|..+|.-||.|..|+|+.++.+ .|+|+|.+...|+.|++.++ ..|.++.|+|.++.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd-----~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKD-----NALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCc-----ceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 5789999995 66799999999999999999999988643 69999999999999999999 88999999999886
Q ss_pred cCCCCCCCCC---------------------------CCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCC
Q 014397 148 AGNSGNSTNN---------------------------PVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQ 200 (425)
Q Consensus 148 ~~~~~~~~~~---------------------------~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~ 200 (425)
...-....+. ....++.+|.+.|+|.+++||+|+++|.+.|-+.+.....
T Consensus 372 H~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff--- 448 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF--- 448 (492)
T ss_pred CccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec---
Confidence 5432221100 1123456899999999999999999999887655443332
Q ss_pred CCCcceEEEEEeCCHHHHHHHHhcC-CCccCC-eEEEEEEccc
Q 014397 201 TGKPKGFALFVYKTAEGAQAALVDP-IKTVDG-KQLNCRLADN 241 (425)
Q Consensus 201 ~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~g-r~i~v~~a~~ 241 (425)
.+.+-+|++.+++.|+|..|+..+ ++.+.. ..|+|++++.
T Consensus 449 -~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 449 -QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred -CCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 233669999999999999999886 566655 4889988764
No 67
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=1.6e-14 Score=122.32 Aligned_cols=85 Identities=29% Similarity=0.495 Sum_probs=78.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEec
Q 014397 68 PTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLA 146 (425)
Q Consensus 68 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~ 146 (425)
.++.-|||++||+++||.||.-+|++||+|++|.+++|+.||+|+||||+.|++..+...|+..++ ..|.+|.|.|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 355679999999999999999999999999999999999999999999999999999999999999 8899999999887
Q ss_pred ccCCCC
Q 014397 147 VAGNSG 152 (425)
Q Consensus 147 ~~~~~~ 152 (425)
......
T Consensus 113 ~~Yk~p 118 (219)
T KOG0126|consen 113 SNYKKP 118 (219)
T ss_pred ccccCC
Confidence 665443
No 68
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=9.9e-13 Score=130.58 Aligned_cols=177 Identities=18% Similarity=0.287 Sum_probs=135.8
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEE
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVT 143 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v 143 (425)
......++|||++||..+++.+++|++..||.+....++.|..++.+|||||.+|.+......|+..++ ..+.++.++|
T Consensus 284 ~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvv 363 (500)
T KOG0120|consen 284 DVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVV 363 (500)
T ss_pred CcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEe
Confidence 344466789999999999999999999999999999999999999999999999999999999999999 7788899999
Q ss_pred EecccCCCCCCCCCC----------------CCcccceEEEeec------CCcccH----HHHHHHHhhcCCceeeeeec
Q 014397 144 NLAVAGNSGNSTNNP----------------VDVSLRKIFVGNV------PNDMSA----DKLLAHFACYGEIEEGPLGF 197 (425)
Q Consensus 144 ~~~~~~~~~~~~~~~----------------~~~~~~~l~V~nL------~~~~te----~~L~~~F~~~G~v~~v~i~~ 197 (425)
+.+............ ....+..|.+.|+ -++..- |+|+..+.+||.|..|.|.+
T Consensus 364 q~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr 443 (500)
T KOG0120|consen 364 QRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPR 443 (500)
T ss_pred ehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCC
Confidence 887654332221111 1112222333332 111111 34556677899999999988
Q ss_pred cCCC---CCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEccc
Q 014397 198 DKQT---GKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLADN 241 (425)
Q Consensus 198 d~~~---g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a~~ 241 (425)
+..+ .-..|-.||+|.+.+++++|+++| +.+|++|+|...+...
T Consensus 444 ~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 444 PYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred CCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 7322 234678999999999999999998 6999999999988754
No 69
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=2.3e-13 Score=125.26 Aligned_cols=82 Identities=20% Similarity=0.357 Sum_probs=74.0
Q ss_pred CCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEE
Q 014397 159 VDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCR 237 (425)
Q Consensus 159 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~ 237 (425)
.....++|+|+|||+..-|.||+.+|++||.|.+|.|+.+ .--||||+||+|++.+||++|.+++ ...+.||+|+|.
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 3445689999999999999999999999999999999987 3457999999999999999999997 599999999999
Q ss_pred EcccC
Q 014397 238 LADNK 242 (425)
Q Consensus 238 ~a~~~ 242 (425)
.++.+
T Consensus 170 ~ATar 174 (376)
T KOG0125|consen 170 NATAR 174 (376)
T ss_pred ccchh
Confidence 98755
No 70
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=6.9e-13 Score=112.01 Aligned_cols=78 Identities=21% Similarity=0.344 Sum_probs=70.8
Q ss_pred ccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEcc
Q 014397 162 SLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLAD 240 (425)
Q Consensus 162 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a~ 240 (425)
..++|||+||+..+++.||+.+|..||.|..|.|.+.+ -|||||||+++.+|+.|+..| ...|.|..|.|++.+
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 35899999999999999999999999999999998764 799999999999999999998 599999999999987
Q ss_pred cCCC
Q 014397 241 NKKA 244 (425)
Q Consensus 241 ~~~~ 244 (425)
.+..
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 6543
No 71
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.39 E-value=2.2e-13 Score=127.61 Aligned_cols=171 Identities=20% Similarity=0.272 Sum_probs=128.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhc----CCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEEe
Q 014397 70 QRKLFIRGLGWDTTTEGLRSIFSAY----GELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNL 145 (425)
Q Consensus 70 ~~~lfV~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~~ 145 (425)
.-.|-+++||+++|+.|+.+||... +-++.|.+++.+ +++.+|-|||.|..+++|+.||.++...+.-|.|.+..
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFR 239 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFR 239 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4457889999999999999999632 245566666654 89999999999999999999999877666666555433
Q ss_pred cccCC-------------CC----------CCCCCCCCcccceEEEeecCCcccHHHHHHHHhhcCC-cee--eeeeccC
Q 014397 146 AVAGN-------------SG----------NSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGE-IEE--GPLGFDK 199 (425)
Q Consensus 146 ~~~~~-------------~~----------~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~-v~~--v~i~~d~ 199 (425)
+.... .. ............+|.+++||+..+.|||.+||..|-. |.. |.++.+
T Consensus 240 STaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N- 318 (508)
T KOG1365|consen 240 STAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN- 318 (508)
T ss_pred HhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-
Confidence 21100 00 0001111223568999999999999999999998853 333 566666
Q ss_pred CCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEcccC
Q 014397 200 QTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLADNK 242 (425)
Q Consensus 200 ~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a~~~ 242 (425)
..|++.|-|||+|.++|+|.+|..+. ++.+..|.|+|-.++..
T Consensus 319 ~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~e 362 (508)
T KOG1365|consen 319 GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVE 362 (508)
T ss_pred CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHH
Confidence 57999999999999999999999986 56667999999877654
No 72
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=5.7e-13 Score=116.14 Aligned_cols=86 Identities=26% Similarity=0.458 Sum_probs=80.3
Q ss_pred cccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCC-CccCCeEEEEEEc
Q 014397 161 VSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPI-KTVDGKQLNCRLA 239 (425)
Q Consensus 161 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~-~~~~gr~i~v~~a 239 (425)
...++|||++|..++||.-|...|-+||.|++|.|+.|.++.+.|||+||+|+..|+|.+||..++ .+|-||.|+|.+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 345899999999999999999999999999999999999999999999999999999999999985 8999999999999
Q ss_pred ccCCCCC
Q 014397 240 DNKKAKP 246 (425)
Q Consensus 240 ~~~~~~~ 246 (425)
++.+.+.
T Consensus 88 kP~kike 94 (298)
T KOG0111|consen 88 KPEKIKE 94 (298)
T ss_pred CCccccC
Confidence 8876554
No 73
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=7.4e-12 Score=122.26 Aligned_cols=158 Identities=20% Similarity=0.288 Sum_probs=117.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCC---CCCccc---EEEEEecchHHHHHHHhcCCCCcCCce
Q 014397 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKA---TGKSKG---YGFITFKHIDGAMLALKEPSKKIDGRV 140 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~---~g~skG---~aFV~F~~~e~A~~Al~~~~~~~~gr~ 140 (425)
..-+++|||+.||++++|++|...|..||.+. |......+ --..+| |+|+.|+++.++++.|......-..-.
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~y 334 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYY 334 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceE
Confidence 44578899999999999999999999999864 33332111 112566 999999999999988876543211111
Q ss_pred EEE-------------EecccCCCCCCCCCCCCcccceEEEeecCCcccHHHHHHHHh-hcCCceeeeeeccCCCCCcce
Q 014397 141 TVT-------------NLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFA-CYGEIEEGPLGFDKQTGKPKG 206 (425)
Q Consensus 141 ~~v-------------~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~-~~G~v~~v~i~~d~~~g~~kG 206 (425)
+.| .|.......-......-...++|||+.||.-++.++|..+|+ -||.|..|-|-.|++-.-++|
T Consensus 335 f~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkG 414 (520)
T KOG0129|consen 335 FKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKG 414 (520)
T ss_pred EEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCC
Confidence 111 111111111111223345678999999999999999999997 799999999999988888999
Q ss_pred EEEEEeCCHHHHHHHHhcC
Q 014397 207 FALFVYKTAEGAQAALVDP 225 (425)
Q Consensus 207 ~afV~F~~~~~A~~A~~~~ 225 (425)
-+=|+|.+.++-.+||.+.
T Consensus 415 aGRVtFsnqqsYi~AIsar 433 (520)
T KOG0129|consen 415 AGRVTFSNQQAYIKAISAR 433 (520)
T ss_pred cceeeecccHHHHHHHhhh
Confidence 9999999999999999884
No 74
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.37 E-value=2.8e-12 Score=115.42 Aligned_cols=78 Identities=14% Similarity=0.057 Sum_probs=70.6
Q ss_pred ccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEEEccc
Q 014397 162 SLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADN 241 (425)
Q Consensus 162 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~~a~~ 241 (425)
...+|||+||++.+|+++|++||+.||+|.+|+|++|. +.++||||+|+++++|+.||..++..|.++.|.|.....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 34789999999999999999999999999999999884 446899999999999999998888999999999988754
Q ss_pred C
Q 014397 242 K 242 (425)
Q Consensus 242 ~ 242 (425)
.
T Consensus 81 y 81 (243)
T PLN03121 81 Y 81 (243)
T ss_pred c
Confidence 3
No 75
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=1.5e-12 Score=119.96 Aligned_cols=83 Identities=25% Similarity=0.434 Sum_probs=75.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTN 144 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~ 144 (425)
.....++|+|.|||+..-|.||+..|++||+|.+|.||.+ ..-||||+||+|++.+||++|-++++ ..+.||+|.|+
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 3445677999999999999999999999999999999987 45699999999999999999999999 89999999999
Q ss_pred ecccCC
Q 014397 145 LAVAGN 150 (425)
Q Consensus 145 ~~~~~~ 150 (425)
.+..+-
T Consensus 170 ~ATarV 175 (376)
T KOG0125|consen 170 NATARV 175 (376)
T ss_pred ccchhh
Confidence 987753
No 76
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.36 E-value=2.6e-12 Score=99.01 Aligned_cols=80 Identities=25% Similarity=0.386 Sum_probs=70.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTN 144 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~ 144 (425)
++..++.|||+|||+++|.+++.++|.+||.|..|+|-..+. .+|.|||.|++..+|++|+..++ ..++++.+.|-
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 344577899999999999999999999999999999876554 58999999999999999999999 88899999888
Q ss_pred eccc
Q 014397 145 LAVA 148 (425)
Q Consensus 145 ~~~~ 148 (425)
+...
T Consensus 91 yyq~ 94 (124)
T KOG0114|consen 91 YYQP 94 (124)
T ss_pred ecCH
Confidence 7644
No 77
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.36 E-value=8.8e-14 Score=117.89 Aligned_cols=81 Identities=28% Similarity=0.470 Sum_probs=75.0
Q ss_pred ccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEcc
Q 014397 162 SLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLAD 240 (425)
Q Consensus 162 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a~ 240 (425)
++.-|||++||+++||.||...|++||+|++|.+++|+.||+|+||||+.|++..+..-|+..+ +..|.+|.|+|....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 3467999999999999999999999999999999999999999999999999999999999986 599999999998775
Q ss_pred cC
Q 014397 241 NK 242 (425)
Q Consensus 241 ~~ 242 (425)
..
T Consensus 114 ~Y 115 (219)
T KOG0126|consen 114 NY 115 (219)
T ss_pred cc
Confidence 43
No 78
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.36 E-value=3.4e-12 Score=114.87 Aligned_cols=77 Identities=16% Similarity=0.107 Sum_probs=69.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEEeccc
Q 014397 69 TQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLAVA 148 (425)
Q Consensus 69 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~~~~~ 148 (425)
...+|||+||++.+|+++|++||+.||+|++|+|++|. .+++||||+|+++++|+.||......|.++.|.|.....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 34689999999999999999999999999999999884 456799999999999999998888999999999887654
No 79
>PLN03213 repressor of silencing 3; Provisional
Probab=99.35 E-value=2e-12 Score=124.73 Aligned_cols=79 Identities=16% Similarity=0.247 Sum_probs=71.2
Q ss_pred CcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCH--HHHHHHHhcC-CCccCCeEEEE
Q 014397 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTA--EGAQAALVDP-IKTVDGKQLNC 236 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~--~~A~~A~~~~-~~~~~gr~i~v 236 (425)
.....+|||+||++.+|+++|+++|+.||.|++|.|+ +++| ||||||+|.+. .++.+||..+ +..+.|+.|+|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 3456789999999999999999999999999999999 4567 99999999987 7899999997 59999999999
Q ss_pred EEcccC
Q 014397 237 RLADNK 242 (425)
Q Consensus 237 ~~a~~~ 242 (425)
..|++.
T Consensus 83 NKAKP~ 88 (759)
T PLN03213 83 EKAKEH 88 (759)
T ss_pred eeccHH
Confidence 999754
No 80
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.35 E-value=7.1e-13 Score=130.91 Aligned_cols=81 Identities=28% Similarity=0.494 Sum_probs=77.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecccC
Q 014397 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAVAG 149 (425)
Q Consensus 71 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~~~ 149 (425)
+.|||+|||++++|++|.++|+..|.|.+++++.|+.||+++||+|++|.+.++|++|++.++ .++.+|.|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 889999999999999999999999999999999999999999999999999999999999999 9999999999998654
Q ss_pred CC
Q 014397 150 NS 151 (425)
Q Consensus 150 ~~ 151 (425)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 81
>smart00362 RRM_2 RNA recognition motif.
Probab=99.34 E-value=5e-12 Score=93.67 Aligned_cols=71 Identities=32% Similarity=0.587 Sum_probs=65.4
Q ss_pred eEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCC-CccCCeEEEEE
Q 014397 165 KIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPI-KTVDGKQLNCR 237 (425)
Q Consensus 165 ~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~-~~~~gr~i~v~ 237 (425)
+|+|.|||.++++++|+++|++||.|..+.+..++ ++++++|||+|.+.++|++|++.++ ..+++++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998875 7789999999999999999999875 88999998874
No 82
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.32 E-value=2.6e-12 Score=111.20 Aligned_cols=81 Identities=26% Similarity=0.431 Sum_probs=76.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEec
Q 014397 68 PTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLA 146 (425)
Q Consensus 68 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~ 146 (425)
....+|.|-||.+-+|.++|+.+|++||.|-+|.|.+|+.|..++|||||.|.+..+|+.||+.++ ..++++.|.|+++
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 345679999999999999999999999999999999999999999999999999999999999999 8899999999988
Q ss_pred cc
Q 014397 147 VA 148 (425)
Q Consensus 147 ~~ 148 (425)
.-
T Consensus 91 ry 92 (256)
T KOG4207|consen 91 RY 92 (256)
T ss_pred hc
Confidence 54
No 83
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=2.9e-12 Score=103.44 Aligned_cols=87 Identities=31% Similarity=0.389 Sum_probs=79.9
Q ss_pred CCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCC-CccCCeEEE
Q 014397 157 NPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPI-KTVDGKQLN 235 (425)
Q Consensus 157 ~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~-~~~~gr~i~ 235 (425)
+........|||.++...+||++|.+.|..||+|+.|.+..|+.||-.||||+|+|++.+.|++||..+| ..|-++.|.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 4445566789999999999999999999999999999999999999999999999999999999999976 999999999
Q ss_pred EEEcccCC
Q 014397 236 CRLADNKK 243 (425)
Q Consensus 236 v~~a~~~~ 243 (425)
|.|+-.+.
T Consensus 146 VDw~Fv~g 153 (170)
T KOG0130|consen 146 VDWCFVKG 153 (170)
T ss_pred EEEEEecC
Confidence 99996543
No 84
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=2.4e-12 Score=112.28 Aligned_cols=104 Identities=24% Similarity=0.415 Sum_probs=88.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEe
Q 014397 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNL 145 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~ 145 (425)
....++|||++|..+|||.-|...|-+||.|.+|.+..|..+.+.+||+||+|...|+|..||..++ .++.||.|+|++
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 3457899999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred cccCCCCCCCCCCCCcccceEEEeecCCcccHHHHHHHH
Q 014397 146 AVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHF 184 (425)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F 184 (425)
+.+.+..... .-|-|.+++.|+.+-
T Consensus 87 AkP~kikegs--------------qkPvWADDdWlkk~~ 111 (298)
T KOG0111|consen 87 AKPEKIKEGS--------------QKPVWADDDWLKKQQ 111 (298)
T ss_pred cCCccccCCC--------------CCCcccCcHHHHHhc
Confidence 9764432211 135566766666544
No 85
>smart00362 RRM_2 RNA recognition motif.
Probab=99.32 E-value=9.1e-12 Score=92.23 Aligned_cols=70 Identities=34% Similarity=0.576 Sum_probs=63.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEE
Q 014397 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVT 143 (425)
Q Consensus 72 ~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v 143 (425)
+|||.|||.++++++|+++|.+||+|..+.++.++ +.++++|||+|.+.++|++|++.++ ..+.++.+.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 59999999999999999999999999999998876 7789999999999999999999888 7777777655
No 86
>smart00360 RRM RNA recognition motif.
Probab=99.31 E-value=6.1e-12 Score=92.79 Aligned_cols=70 Identities=40% Similarity=0.641 Sum_probs=64.9
Q ss_pred EeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCC-CccCCeEEEEE
Q 014397 168 VGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPI-KTVDGKQLNCR 237 (425)
Q Consensus 168 V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~-~~~~gr~i~v~ 237 (425)
|.|||+++++++|+++|++||.|..+.|..++.+++++++|||+|.+.++|++|++.++ ..++++.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57899999999999999999999999999988889999999999999999999999875 88899998873
No 87
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.31 E-value=1.5e-12 Score=123.03 Aligned_cols=177 Identities=23% Similarity=0.277 Sum_probs=143.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecc
Q 014397 69 TQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAV 147 (425)
Q Consensus 69 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~ 147 (425)
...++|++++.+.+.+.++..++..+|.+..+.++....+..++++++|.|+..+.+..||.... ..+..+.+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 57889999999999999999999999998888888877788999999999999999999999877 45555555544443
Q ss_pred cCCCC--CCCCCCCCcccceEE-EeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhc
Q 014397 148 AGNSG--NSTNNPVDVSLRKIF-VGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVD 224 (425)
Q Consensus 148 ~~~~~--~~~~~~~~~~~~~l~-V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~ 224 (425)
..... ............++| |.+|++.+++++|+.+|..++.|..|++..+..++.+++|+||+|.+...+.+|+..
T Consensus 167 ~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 167 RRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred cccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc
Confidence 32211 111112222334455 999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCccCCeEEEEEEcccCCCC
Q 014397 225 PIKTVDGKQLNCRLADNKKAK 245 (425)
Q Consensus 225 ~~~~~~gr~i~v~~a~~~~~~ 245 (425)
....+.++++.+.........
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 247 QTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred ccCcccCcccccccCCCCccc
Confidence 447888999999888765443
No 88
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=9.7e-12 Score=105.79 Aligned_cols=78 Identities=27% Similarity=0.427 Sum_probs=68.3
Q ss_pred ccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEcc
Q 014397 162 SLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLAD 240 (425)
Q Consensus 162 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a~ 240 (425)
..++|||+|||.++.+.+|+++|.+||.|.+|.|-. .-..-.||||+|+++.+|+.||... ...+++..|.|+++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~---r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKN---RPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEecc---CCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 357899999999999999999999999999998842 2344679999999999999999985 699999999999986
Q ss_pred cC
Q 014397 241 NK 242 (425)
Q Consensus 241 ~~ 242 (425)
.-
T Consensus 82 gg 83 (241)
T KOG0105|consen 82 GG 83 (241)
T ss_pred CC
Confidence 43
No 89
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.31 E-value=8.3e-12 Score=117.77 Aligned_cols=79 Identities=30% Similarity=0.561 Sum_probs=75.6
Q ss_pred cceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCC-CccCCeEEEEEEccc
Q 014397 163 LRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPI-KTVDGKQLNCRLADN 241 (425)
Q Consensus 163 ~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~-~~~~gr~i~v~~a~~ 241 (425)
..+|||+|||+++|+++|+++|.+||.|..|.|..|+.+++++|||||+|.+.++|..|++.++ ..|.++.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 6899999999999999999999999999999999999899999999999999999999999985 999999999999653
No 90
>PLN03213 repressor of silencing 3; Provisional
Probab=99.30 E-value=8e-12 Score=120.65 Aligned_cols=78 Identities=18% Similarity=0.270 Sum_probs=70.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecch--HHHHHHHhcCC-CCcCCceEEE
Q 014397 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHI--DGAMLALKEPS-KKIDGRVTVT 143 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~--e~A~~Al~~~~-~~~~gr~~~v 143 (425)
.....+|||+||++++|+++|+.+|+.||.|.+|.|++ .++ ||||||+|.+. +++.+||+.++ ..|.|+.|.|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 34557899999999999999999999999999999994 466 99999999987 78999999999 9999999999
Q ss_pred Eeccc
Q 014397 144 NLAVA 148 (425)
Q Consensus 144 ~~~~~ 148 (425)
+.+.+
T Consensus 83 NKAKP 87 (759)
T PLN03213 83 EKAKE 87 (759)
T ss_pred eeccH
Confidence 88754
No 91
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=9.1e-14 Score=142.21 Aligned_cols=154 Identities=19% Similarity=0.251 Sum_probs=132.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEEecc
Q 014397 68 PTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLAV 147 (425)
Q Consensus 68 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~~~~ 147 (425)
....++||+||+..+.+++|.+.|..++.++.+.+...+..++.+|+|||+|.+++++.+||......+.++
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK-------- 736 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGK-------- 736 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhh--------
Confidence 445679999999999999999999999998888887667789999999999999999999998877555542
Q ss_pred cCCCCCCCCCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-C
Q 014397 148 AGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-I 226 (425)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~ 226 (425)
.+|+|.|+|+..|+++|+.+++.+|.+++++++.. ..++++|.|+|.|.++.++.+++... .
T Consensus 737 ----------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s~d~ 799 (881)
T KOG0128|consen 737 ----------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV-RAGKPKGKARVDYNTEADASRKVASVDV 799 (881)
T ss_pred ----------------hhhheeCCCCCCchHHHHhhccccCCccccchhhh-hccccccceeccCCCcchhhhhcccchh
Confidence 57999999999999999999999999999998777 47999999999999999999999886 4
Q ss_pred CccCCeEEEEEEcccCCCCC
Q 014397 227 KTVDGKQLNCRLADNKKAKP 246 (425)
Q Consensus 227 ~~~~gr~i~v~~a~~~~~~~ 246 (425)
..++.+.+.|....+...++
T Consensus 800 ~~~rE~~~~v~vsnp~~~K~ 819 (881)
T KOG0128|consen 800 AGKRENNGEVQVSNPERDKK 819 (881)
T ss_pred hhhhhcCccccccCCccccc
Confidence 66777777777765543333
No 92
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.29 E-value=6e-12 Score=101.63 Aligned_cols=86 Identities=21% Similarity=0.412 Sum_probs=78.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTN 144 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~ 144 (425)
.....-.|||.++...+||++|.+.|..||+|+++.+-.|+.|+-.||||+|+|++.++|++|+..++ ..+.++.+.|.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 33445569999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred ecccCCC
Q 014397 145 LAVAGNS 151 (425)
Q Consensus 145 ~~~~~~~ 151 (425)
|+..+..
T Consensus 148 w~Fv~gp 154 (170)
T KOG0130|consen 148 WCFVKGP 154 (170)
T ss_pred EEEecCC
Confidence 9865443
No 93
>smart00360 RRM RNA recognition motif.
Probab=99.29 E-value=1.4e-11 Score=90.90 Aligned_cols=69 Identities=39% Similarity=0.624 Sum_probs=63.4
Q ss_pred EcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEE
Q 014397 75 IRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVT 143 (425)
Q Consensus 75 V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v 143 (425)
|+|||.++++++|+++|+.||.|..|.+..++.+++++++|||+|.+.++|++|++.++ ..+.++.+.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 57999999999999999999999999999988789999999999999999999999988 7777777665
No 94
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.29 E-value=1.5e-11 Score=94.84 Aligned_cols=80 Identities=24% Similarity=0.337 Sum_probs=71.5
Q ss_pred CcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEE
Q 014397 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRL 238 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~ 238 (425)
..-++-|||.|||+++|.|++.++|.+||.|..|+|-..++| +|.|||.|++..+|++|++.+ ...+.++.|.|-+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 344578999999999999999999999999999999877665 899999999999999999997 6899999999977
Q ss_pred cccC
Q 014397 239 ADNK 242 (425)
Q Consensus 239 a~~~ 242 (425)
-.+.
T Consensus 92 yq~~ 95 (124)
T KOG0114|consen 92 YQPE 95 (124)
T ss_pred cCHH
Confidence 6543
No 95
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.28 E-value=5e-12 Score=119.62 Aligned_cols=162 Identities=18% Similarity=0.237 Sum_probs=116.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC---CCcCCceEEEE
Q 014397 68 PTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS---KKIDGRVTVTN 144 (425)
Q Consensus 68 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~---~~~~gr~~~v~ 144 (425)
..++.|.++|||++++|+||.+++.+||.|..+.+++-+. -|||+|.++++|...+.... -.+.++++.++
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 3678899999999999999999999999999999887653 79999999999988444332 44566666665
Q ss_pred ecccCCCCCCC------------------------C--------CCCCcccceEEEeecCCcccHHHHHHHHhhcCCcee
Q 014397 145 LAVAGNSGNST------------------------N--------NPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEE 192 (425)
Q Consensus 145 ~~~~~~~~~~~------------------------~--------~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~ 192 (425)
++.......+. . .........++|.|+-+.+|-|-|.++|++||.|.+
T Consensus 100 ~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlK 179 (492)
T KOG1190|consen 100 YSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLK 179 (492)
T ss_pred hhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEE
Confidence 54211100000 0 001113346889999999999999999999999988
Q ss_pred eeeeccCCCCCcce-EEEEEeCCHHHHHHHHhcC-CCcc-CC-eEEEEEEcc
Q 014397 193 GPLGFDKQTGKPKG-FALFVYKTAEGAQAALVDP-IKTV-DG-KQLNCRLAD 240 (425)
Q Consensus 193 v~i~~d~~~g~~kG-~afV~F~~~~~A~~A~~~~-~~~~-~g-r~i~v~~a~ 240 (425)
|.-+.. . .+ .|+|.|.+++.|+.|...+ +..| +| .+|++.+++
T Consensus 180 IiTF~K-n----n~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sk 226 (492)
T KOG1190|consen 180 IITFTK-N----NGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSK 226 (492)
T ss_pred EEEEec-c----cchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhh
Confidence 755432 1 23 3899999999999997775 3333 33 455665553
No 96
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.27 E-value=6.6e-10 Score=104.22 Aligned_cols=164 Identities=16% Similarity=0.158 Sum_probs=125.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC---CCcCCceEEE
Q 014397 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS---KKIDGRVTVT 143 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~---~~~~gr~~~v 143 (425)
...+-.|.|++|-..++|.+|.+.++.||.|.-|.++..+. .|.|+|++.+.|+.|+.... ..+.++...+
T Consensus 28 ~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r------~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~ 101 (494)
T KOG1456|consen 28 PNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR------QALVEFEDIEGAKNCVNFAADNQIYIAGQQALF 101 (494)
T ss_pred CCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccc------eeeeeeccccchhhheehhccCcccccCchhhc
Confidence 44566799999999999999999999999998887776532 79999999999999996533 5567777777
Q ss_pred EecccCCCCCCCCCCCCcccce--EEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHH
Q 014397 144 NLAVAGNSGNSTNNPVDVSLRK--IFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAA 221 (425)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~--l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A 221 (425)
+++......... .+.....+. +.|-|--+.+|.|-|..+...+|.|.+|.|++. ++. .|.|||++.+.|++|
T Consensus 102 NyStsq~i~R~g-~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrA 175 (494)
T KOG1456|consen 102 NYSTSQCIERPG-DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRA 175 (494)
T ss_pred ccchhhhhccCC-CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHH
Confidence 777544333222 222222333 345566678999999999999999999999865 433 699999999999999
Q ss_pred HhcCC-Ccc--CCeEEEEEEcccC
Q 014397 222 LVDPI-KTV--DGKQLNCRLADNK 242 (425)
Q Consensus 222 ~~~~~-~~~--~gr~i~v~~a~~~ 242 (425)
.+.++ ..| .=.+|+|++|++.
T Consensus 176 k~alNGADIYsGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 176 KAALNGADIYSGCCTLKIEYAKPT 199 (494)
T ss_pred HhhcccccccccceeEEEEecCcc
Confidence 88864 333 3378899999765
No 97
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.26 E-value=7.7e-12 Score=106.39 Aligned_cols=81 Identities=21% Similarity=0.279 Sum_probs=76.5
Q ss_pred cccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCC-CccCCeEEEEEEc
Q 014397 161 VSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPI-KTVDGKQLNCRLA 239 (425)
Q Consensus 161 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~-~~~~gr~i~v~~a 239 (425)
....+|||+||+..++++.|.++|-+.|.|.+|.|++|+.+.+.+|||||+|.++|+|+=|++-++ ..|-||+|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 445799999999999999999999999999999999999999999999999999999999999975 8899999999999
Q ss_pred cc
Q 014397 240 DN 241 (425)
Q Consensus 240 ~~ 241 (425)
..
T Consensus 87 s~ 88 (203)
T KOG0131|consen 87 SA 88 (203)
T ss_pred cc
Confidence 83
No 98
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=4.8e-12 Score=121.07 Aligned_cols=75 Identities=31% Similarity=0.502 Sum_probs=69.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecc
Q 014397 69 TQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAV 147 (425)
Q Consensus 69 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~ 147 (425)
.-+.|||+||+.++||+.|+++|++||.|+.|+.++| ||||+|.+.++|.+||+.++ ++|+|..|.|.++.
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAK 329 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecC
Confidence 3456999999999999999999999999999999977 99999999999999999999 99999999999998
Q ss_pred cCCC
Q 014397 148 AGNS 151 (425)
Q Consensus 148 ~~~~ 151 (425)
+..+
T Consensus 330 P~~k 333 (506)
T KOG0117|consen 330 PVDK 333 (506)
T ss_pred Chhh
Confidence 7544
No 99
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.24 E-value=4e-11 Score=89.20 Aligned_cols=73 Identities=34% Similarity=0.586 Sum_probs=66.3
Q ss_pred eEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCC-CccCCeEEEEEE
Q 014397 165 KIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPI-KTVDGKQLNCRL 238 (425)
Q Consensus 165 ~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~-~~~~gr~i~v~~ 238 (425)
+|+|.+||+++++++|+++|+.||.|..+.+..+..+ +++++|||+|.+.++|+.|++.++ ..+++++|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999988655 778999999999999999999974 669999999864
No 100
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.24 E-value=1.4e-11 Score=121.94 Aligned_cols=81 Identities=33% Similarity=0.591 Sum_probs=77.3
Q ss_pred ceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCC-CccCCeEEEEEEcccC
Q 014397 164 RKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPI-KTVDGKQLNCRLADNK 242 (425)
Q Consensus 164 ~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~-~~~~gr~i~v~~a~~~ 242 (425)
..|||+|+|++++|++|.++|+..|.|.+++++.|++||++|||+|++|.+.++|++|++.++ .++.+|+|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 789999999999999999999999999999999999999999999999999999999999985 9999999999999765
Q ss_pred CC
Q 014397 243 KA 244 (425)
Q Consensus 243 ~~ 244 (425)
+.
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 44
No 101
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.23 E-value=6.8e-11 Score=87.95 Aligned_cols=73 Identities=37% Similarity=0.610 Sum_probs=65.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEe
Q 014397 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNL 145 (425)
Q Consensus 72 ~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~ 145 (425)
+|+|++||.++++++|+++|..+|.|..+.+..++.+ +.+++|||+|.+.++|..|++.++ ..+.++.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999988654 779999999999999999999988 447888777653
No 102
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=3.2e-11 Score=119.94 Aligned_cols=170 Identities=23% Similarity=0.321 Sum_probs=136.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhc-----------C-CeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCC
Q 014397 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAY-----------G-ELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSK 134 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~l~~~F~~~-----------G-~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~ 134 (425)
....+.++|++||..++++.+..+|..- | .|..|.+-.. +.||||+|.+.++|..|+.....
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~------~nfa~ie~~s~~~at~~~~~~~~ 245 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLE------KNFAFIEFRSISEATEAMALDGI 245 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeeccc------ccceeEEecCCCchhhhhcccch
Confidence 3456779999999999999999999764 2 3566665544 44999999999999999998887
Q ss_pred CcCCceEEEEecccCCCC---------------CCCCCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccC
Q 014397 135 KIDGRVTVTNLAVAGNSG---------------NSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDK 199 (425)
Q Consensus 135 ~~~gr~~~v~~~~~~~~~---------------~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~ 199 (425)
.+.++.+.+......... ............++||++||..+++++++++.+.||.++...++.|.
T Consensus 246 ~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~ 325 (500)
T KOG0120|consen 246 IFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDS 325 (500)
T ss_pred hhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccc
Confidence 777776665433221111 11122334456789999999999999999999999999999999999
Q ss_pred CCCCcceEEEEEeCCHHHHHHHHhcCC-CccCCeEEEEEEcccC
Q 014397 200 QTGKPKGFALFVYKTAEGAQAALVDPI-KTVDGKQLNCRLADNK 242 (425)
Q Consensus 200 ~~g~~kG~afV~F~~~~~A~~A~~~~~-~~~~gr~i~v~~a~~~ 242 (425)
.++-+++|||.+|.++.....|++.++ ..+.+++|.|..|-..
T Consensus 326 ~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g 369 (500)
T KOG0120|consen 326 ATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVG 369 (500)
T ss_pred ccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhcc
Confidence 999999999999999999999999975 8899999999888544
No 103
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.19 E-value=2.1e-10 Score=112.88 Aligned_cols=82 Identities=26% Similarity=0.371 Sum_probs=71.5
Q ss_pred cceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEEEcccC
Q 014397 163 LRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNK 242 (425)
Q Consensus 163 ~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~~a~~~ 242 (425)
...|||.|||.++++++|+++|.+||.|+...|..-...++..+|+||+|++.++++.||++....|++++|.|+..+..
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecccc
Confidence 34599999999999999999999999999988876543455559999999999999999999989999999999877664
Q ss_pred CC
Q 014397 243 KA 244 (425)
Q Consensus 243 ~~ 244 (425)
..
T Consensus 368 ~~ 369 (419)
T KOG0116|consen 368 FR 369 (419)
T ss_pred cc
Confidence 43
No 104
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=8.2e-11 Score=109.50 Aligned_cols=84 Identities=32% Similarity=0.449 Sum_probs=77.7
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEE
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVT 143 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v 143 (425)
+..++.+.|||..|.+-+|+++|.-+|+.||+|.+|.||+|..|+.+.-||||+|++.+++++|.-.++ ..|+.+.|.|
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 345678999999999999999999999999999999999999999999999999999999999998887 7789999999
Q ss_pred Eeccc
Q 014397 144 NLAVA 148 (425)
Q Consensus 144 ~~~~~ 148 (425)
.++..
T Consensus 314 DFSQS 318 (479)
T KOG0415|consen 314 DFSQS 318 (479)
T ss_pred ehhhh
Confidence 88754
No 105
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.19 E-value=8.9e-11 Score=110.32 Aligned_cols=175 Identities=18% Similarity=0.243 Sum_probs=129.9
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEE
Q 014397 64 ADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVT 143 (425)
Q Consensus 64 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v 143 (425)
.....++..|-.+.|||..++.+|..||.-.-...-.+.++....++-.|++.|.|.++|.-+.|++.....+..|.+.|
T Consensus 54 ~~~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryiev 133 (508)
T KOG1365|consen 54 NHSADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEV 133 (508)
T ss_pred ccccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceee
Confidence 33455666788899999999999999998775544445555556788889999999999999999999888888899888
Q ss_pred EecccCCC--------CCCCCCCCCcccceEEEeecCCcccHHHHHHHHhhc----CCceeeeeeccCCCCCcceEEEEE
Q 014397 144 NLAVAGNS--------GNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACY----GEIEEGPLGFDKQTGKPKGFALFV 211 (425)
Q Consensus 144 ~~~~~~~~--------~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~----G~v~~v~i~~d~~~g~~kG~afV~ 211 (425)
-.+....- ............-.|.+++||+++++.|+.+||.+- +.++.|-++ .+.+++..|-|||.
T Consensus 134 Yka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV-~rpdgrpTGdAFvl 212 (508)
T KOG1365|consen 134 YKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFV-TRPDGRPTGDAFVL 212 (508)
T ss_pred eccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEE-ECCCCCcccceEEE
Confidence 66543221 011111122234468889999999999999999633 233344443 34589999999999
Q ss_pred eCCHHHHHHHHhcCCCccCCeEEEEEEc
Q 014397 212 YKTAEGAQAALVDPIKTVDGKQLNCRLA 239 (425)
Q Consensus 212 F~~~~~A~~A~~~~~~~~~gr~i~v~~a 239 (425)
|..+++|+.||.++...|.-|.|++-.+
T Consensus 213 fa~ee~aq~aL~khrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 213 FACEEDAQFALRKHRQNIGQRYIELFRS 240 (508)
T ss_pred ecCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 9999999999999767777777766444
No 106
>smart00361 RRM_1 RNA recognition motif.
Probab=99.16 E-value=9.7e-11 Score=87.35 Aligned_cols=61 Identities=20% Similarity=0.388 Sum_probs=54.3
Q ss_pred HHHHHHHHh----hcCCceeee-eeccCCC--CCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEE
Q 014397 177 ADKLLAHFA----CYGEIEEGP-LGFDKQT--GKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCR 237 (425)
Q Consensus 177 e~~L~~~F~----~~G~v~~v~-i~~d~~~--g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~ 237 (425)
+++|+++|+ +||.|.+|. |+.++.+ ++++||+||+|.+.++|.+|+..+ +..++++.|.++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 678889998 999999995 7777766 899999999999999999999996 599999999863
No 107
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.14 E-value=3.8e-11 Score=113.92 Aligned_cols=85 Identities=24% Similarity=0.479 Sum_probs=79.7
Q ss_pred ccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEEEccc
Q 014397 162 SLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADN 241 (425)
Q Consensus 162 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~~a~~ 241 (425)
+..+|||++|+|+++++.|++.|.+||+|.+|.|++|+.+++++||+||+|++++...++|....+.|+++.|.++.+.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 56899999999999999999999999999999999999999999999999999999999999888999999999999977
Q ss_pred CCCCC
Q 014397 242 KKAKP 246 (425)
Q Consensus 242 ~~~~~ 246 (425)
+....
T Consensus 85 r~~~~ 89 (311)
T KOG4205|consen 85 REDQT 89 (311)
T ss_pred ccccc
Confidence 76544
No 108
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.11 E-value=2.4e-11 Score=106.15 Aligned_cols=139 Identities=17% Similarity=0.251 Sum_probs=111.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTN 144 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~ 144 (425)
.....+||||.||...|+|+-|.|+|-+.|+|..|.|..++ +.+.| ||||+|+++.++..|++.++ ..+.++.+.++
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 34456889999999999999999999999999999988876 56667 99999999999999999998 66666666555
Q ss_pred ecccCCCCCCCCCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhc
Q 014397 145 LAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVD 224 (425)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~ 224 (425)
+...... .-|...++++.+.+.|+..+.++.+++..+. +++.+-+.||++....+.-.++..
T Consensus 83 ~r~G~sh-----------------apld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~ 144 (267)
T KOG4454|consen 83 LRCGNSH-----------------APLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDL 144 (267)
T ss_pred cccCCCc-----------------chhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhhh
Confidence 4432111 0166778999999999999999999999885 488888999988766655555443
No 109
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.10 E-value=5.1e-11 Score=108.33 Aligned_cols=80 Identities=21% Similarity=0.394 Sum_probs=72.9
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEE
Q 014397 64 ADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTV 142 (425)
Q Consensus 64 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~ 142 (425)
.+....+++|+|+||.+.+|.+||++.|++||+|.+|+|++| |+||.|...++|..|++.++ .+|.|+.+.
T Consensus 72 ksKsk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~ 143 (346)
T KOG0109|consen 72 KSKSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMH 143 (346)
T ss_pred cccCCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceee
Confidence 344567889999999999999999999999999999999977 99999999999999999988 999999999
Q ss_pred EEecccCCC
Q 014397 143 TNLAVAGNS 151 (425)
Q Consensus 143 v~~~~~~~~ 151 (425)
|+++..+..
T Consensus 144 vq~stsrlr 152 (346)
T KOG0109|consen 144 VQLSTSRLR 152 (346)
T ss_pred eeeeccccc
Confidence 999876543
No 110
>smart00361 RRM_1 RNA recognition motif.
Probab=99.09 E-value=3.1e-10 Score=84.61 Aligned_cols=60 Identities=25% Similarity=0.458 Sum_probs=53.3
Q ss_pred HHHHHHHHh----hcCCeeEEE-EeecCCC--CCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEE
Q 014397 84 TEGLRSIFS----AYGELEEAV-VILDKAT--GKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVT 143 (425)
Q Consensus 84 e~~l~~~F~----~~G~i~~v~-i~~~~~~--g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v 143 (425)
+++|+++|+ .||.|.+|. |+.++.+ ++++||+||+|.+.++|.+|++.++ ..+.++.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999998 999999995 7777666 8999999999999999999999988 8888888765
No 111
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.05 E-value=4.6e-10 Score=79.74 Aligned_cols=55 Identities=27% Similarity=0.442 Sum_probs=49.0
Q ss_pred HHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEc
Q 014397 180 LLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLA 239 (425)
Q Consensus 180 L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a 239 (425)
|+++|++||+|++|.+..+. +++|||+|.+.++|++|++.+ +..++|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999998663 589999999999999999985 68999999999985
No 112
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.05 E-value=3.5e-10 Score=114.98 Aligned_cols=109 Identities=23% Similarity=0.317 Sum_probs=86.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEec
Q 014397 68 PTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLA 146 (425)
Q Consensus 68 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~ 146 (425)
..++||||+.|+..++|.||..+|+.||+|++|+++.. ++||||++.+..+|++||.++. ..+..+.|.+.|+
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 35889999999999999999999999999999999865 6799999999999999999988 8889999999999
Q ss_pred ccCCCCCCCCCCCCcccceEEEeecCCcccHHHHHHHHh
Q 014397 147 VAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFA 185 (425)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~ 185 (425)
+..-....- .+.-...|=|.-|||+.-.++|+.|++
T Consensus 493 ~g~G~kse~---k~~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 493 VGKGPKSEY---KDYWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred ccCCcchhh---hhhhhcccCeeEeehHhcCHHHHHhhh
Confidence 865432210 111112345667788765555777664
No 113
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.05 E-value=2e-10 Score=102.66 Aligned_cols=172 Identities=23% Similarity=0.328 Sum_probs=132.6
Q ss_pred CCCCCeEEEcCCCCCCCHHH-H--HHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEE
Q 014397 67 DPTQRKLFIRGLGWDTTTEG-L--RSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVT 143 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~-l--~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v 143 (425)
++..-.+|+.++-.++..+- | ...|+.+=.+...+++++. .+.-++++|+.|.....-.++-.+-..+..+..- |
T Consensus 93 ~P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~-V 170 (290)
T KOG0226|consen 93 APAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPP-V 170 (290)
T ss_pred CcccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcc-e
Confidence 34555677888777776655 3 5667777666666777764 5667889999998877776666555533333321 5
Q ss_pred EecccCCCCCCCCCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHh
Q 014397 144 NLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALV 223 (425)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~ 223 (425)
.++....+.+....+.+....+||.+.|..+++++.|-..|.+|-.....++++|+-|++++||+||.|.+..++..|+.
T Consensus 171 R~a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmr 250 (290)
T KOG0226|consen 171 RLAAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMR 250 (290)
T ss_pred eeccccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHH
Confidence 55555555555555666677899999999999999999999999888899999999999999999999999999999999
Q ss_pred cCC-CccCCeEEEEEEcc
Q 014397 224 DPI-KTVDGKQLNCRLAD 240 (425)
Q Consensus 224 ~~~-~~~~gr~i~v~~a~ 240 (425)
+++ +.++.|.|+++...
T Consensus 251 em~gkyVgsrpiklRkS~ 268 (290)
T KOG0226|consen 251 EMNGKYVGSRPIKLRKSE 268 (290)
T ss_pred hhcccccccchhHhhhhh
Confidence 974 88899998876654
No 114
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=2.7e-10 Score=106.04 Aligned_cols=82 Identities=16% Similarity=0.290 Sum_probs=76.7
Q ss_pred CcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEE
Q 014397 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRL 238 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~ 238 (425)
..+.+.|||--|.+-||+++|+-+|+.||.|..|.|++|..|+.+-.||||+|++.+++++|.-+| |..|+.+.|+|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 345678999999999999999999999999999999999999999999999999999999999998 7899999999998
Q ss_pred ccc
Q 014397 239 ADN 241 (425)
Q Consensus 239 a~~ 241 (425)
+..
T Consensus 316 SQS 318 (479)
T KOG0415|consen 316 SQS 318 (479)
T ss_pred hhh
Confidence 743
No 115
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.02 E-value=7.7e-10 Score=103.13 Aligned_cols=81 Identities=25% Similarity=0.436 Sum_probs=73.7
Q ss_pred CCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC--CCccCCeE
Q 014397 156 NNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP--IKTVDGKQ 233 (425)
Q Consensus 156 ~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~--~~~~~gr~ 233 (425)
.++++...++|||++|-..++|.+|+++|.+||+|+.|+|+.. +++|||+|.+.++|+.|.++. ...|+|++
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~R 294 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFR 294 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceE
Confidence 5667778899999999999999999999999999999999876 569999999999999999994 47899999
Q ss_pred EEEEEcccC
Q 014397 234 LNCRLADNK 242 (425)
Q Consensus 234 i~v~~a~~~ 242 (425)
|.|.|..+.
T Consensus 295 l~i~Wg~~~ 303 (377)
T KOG0153|consen 295 LKIKWGRPK 303 (377)
T ss_pred EEEEeCCCc
Confidence 999999883
No 116
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.98 E-value=1.4e-08 Score=95.41 Aligned_cols=169 Identities=17% Similarity=0.195 Sum_probs=124.5
Q ss_pred ccCCCCCCeEEEcCC--CCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CC-cCCc
Q 014397 64 ADADPTQRKLFIRGL--GWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KK-IDGR 139 (425)
Q Consensus 64 ~~~~~~~~~lfV~nL--p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~-~~gr 139 (425)
.+....+..|.+.=| -+.+|-+-|..+-..+|+|..|.|++. ++. .|.|||++.+.|++|-+.++ .. +.|.
T Consensus 114 ~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGADIYsGC 188 (494)
T KOG1456|consen 114 DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGADIYSGC 188 (494)
T ss_pred CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHHHhhcccccccccc
Confidence 334444555555544 467899999999999999999988765 333 69999999999999999998 33 3443
Q ss_pred -eEEEEecccCCCCCC------C---------------------------------------------------------
Q 014397 140 -VTVTNLAVAGNSGNS------T--------------------------------------------------------- 155 (425)
Q Consensus 140 -~~~v~~~~~~~~~~~------~--------------------------------------------------------- 155 (425)
.|.++++.+....-. .
T Consensus 189 CTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~ 268 (494)
T KOG1456|consen 189 CTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRY 268 (494)
T ss_pred eeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCC
Confidence 455555443211000 0
Q ss_pred -----------CCCCCcccceEEEeecCCc-ccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHh
Q 014397 156 -----------NNPVDVSLRKIFVGNVPND-MSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALV 223 (425)
Q Consensus 156 -----------~~~~~~~~~~l~V~nL~~~-~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~ 223 (425)
.+.-..+...+.|.+|... ++-+.|-.+|..||.|++|++++.+ .|.|.|+..|+.+.++|+.
T Consensus 269 ~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~ 343 (494)
T KOG1456|consen 269 RDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVT 343 (494)
T ss_pred ccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHH
Confidence 0001112345899999875 5678899999999999999999876 5899999999999999999
Q ss_pred cC-CCccCCeEEEEEEcccC
Q 014397 224 DP-IKTVDGKQLNCRLADNK 242 (425)
Q Consensus 224 ~~-~~~~~gr~i~v~~a~~~ 242 (425)
.+ +..+-|.+|.|.+++..
T Consensus 344 hLnn~~lfG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 344 HLNNIPLFGGKLNVCVSKQN 363 (494)
T ss_pred HhccCccccceEEEeecccc
Confidence 97 57889999999887654
No 117
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.97 E-value=1.4e-09 Score=77.27 Aligned_cols=55 Identities=25% Similarity=0.588 Sum_probs=48.7
Q ss_pred HHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEec
Q 014397 87 LRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLA 146 (425)
Q Consensus 87 l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~ 146 (425)
|+++|++||+|+++.+..++ +++|||+|.+.++|++|++.++ ..+.++.|.|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999997664 5799999999999999999888 8899999999875
No 118
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.95 E-value=8.2e-10 Score=99.29 Aligned_cols=86 Identities=26% Similarity=0.384 Sum_probs=78.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTN 144 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~ 144 (425)
.-++.|+|||-.||.+..+.||...|-.||.|++.+|..|+.|..||+|+||.|.++.+|+.||..++ ..|.=+.+.|.
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999 77777888888
Q ss_pred ecccCCC
Q 014397 145 LAVAGNS 151 (425)
Q Consensus 145 ~~~~~~~ 151 (425)
+..++..
T Consensus 361 LKRPkda 367 (371)
T KOG0146|consen 361 LKRPKDA 367 (371)
T ss_pred hcCcccc
Confidence 8766543
No 119
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.87 E-value=6.1e-09 Score=90.81 Aligned_cols=85 Identities=21% Similarity=0.362 Sum_probs=75.7
Q ss_pred CCCcccceEEEeecCCcccHHHHHHHHhhc-CCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEE
Q 014397 158 PVDVSLRKIFVGNVPNDMSADKLLAHFACY-GEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLN 235 (425)
Q Consensus 158 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~-G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~ 235 (425)
........++|..+|..+.+.+|..+|.+| |.|.++++.+++.||.|||||||+|++++.|+-|.+.| +..|.++-|.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 344555679999999999999999999888 78889999999999999999999999999999999997 5888999999
Q ss_pred EEEcccC
Q 014397 236 CRLADNK 242 (425)
Q Consensus 236 v~~a~~~ 242 (425)
|.+..+.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9887654
No 120
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.86 E-value=7.3e-09 Score=96.72 Aligned_cols=78 Identities=24% Similarity=0.380 Sum_probs=70.0
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC--CCcCCceEE
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS--KKIDGRVTV 142 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~--~~~~gr~~~ 142 (425)
..+...++|||++|-..++|.+|+++|.+||+|.++.++..+ +||||+|.+.++|++|.++.. ..|+|+.|.
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 356678899999998899999999999999999999998764 499999999999999998765 778999999
Q ss_pred EEeccc
Q 014397 143 TNLAVA 148 (425)
Q Consensus 143 v~~~~~ 148 (425)
|.|...
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 999887
No 121
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.85 E-value=1.6e-09 Score=112.00 Aligned_cols=164 Identities=23% Similarity=0.278 Sum_probs=128.2
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCC-ceEEE
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDG-RVTVT 143 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~g-r~~~v 143 (425)
++...+++||++||+..+++.+|+..|..+|.|++|.|-.-+ -+.-.-|+||.|.+.+.+-.|...+...+.+ -.+.+
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 445678999999999999999999999999999999886543 3444559999999999999888877733322 22222
Q ss_pred EecccCCCCCCCCCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHh
Q 014397 144 NLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALV 223 (425)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~ 223 (425)
.+.. .....++.++|+.|..|+....|...|..||.|..|.+-.. .-||+|.|++...|++|+.
T Consensus 446 glG~----------~kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~ 509 (975)
T KOG0112|consen 446 GLGQ----------PKSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATH 509 (975)
T ss_pred cccc----------cccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHH
Confidence 2221 13345688999999999999999999999999999877432 3499999999999999999
Q ss_pred cC-CCccCC--eEEEEEEcccCCCC
Q 014397 224 DP-IKTVDG--KQLNCRLADNKKAK 245 (425)
Q Consensus 224 ~~-~~~~~g--r~i~v~~a~~~~~~ 245 (425)
.+ ...|.+ +.|.|.++...-+.
T Consensus 510 ~~rgap~G~P~~r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 510 DMRGAPLGGPPRRLRVDLASPPGAT 534 (975)
T ss_pred HHhcCcCCCCCcccccccccCCCCC
Confidence 86 566655 67899988765433
No 122
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.83 E-value=1.2e-08 Score=100.58 Aligned_cols=80 Identities=25% Similarity=0.453 Sum_probs=74.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecc
Q 014397 69 TQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAV 147 (425)
Q Consensus 69 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~ 147 (425)
..++|||.+|...+-..+|+.||++||+|+-++|+.+..+.-.++|+||++.+.++|.+||+.++ ++|.|+.|.|..+.
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 46779999999999999999999999999999999998888899999999999999999999999 99999999998775
Q ss_pred c
Q 014397 148 A 148 (425)
Q Consensus 148 ~ 148 (425)
.
T Consensus 484 N 484 (940)
T KOG4661|consen 484 N 484 (940)
T ss_pred c
Confidence 4
No 123
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.83 E-value=1.1e-08 Score=89.15 Aligned_cols=84 Identities=15% Similarity=0.258 Sum_probs=71.8
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhc-CCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEE
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAY-GELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTV 142 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~-G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~ 142 (425)
........++|..||.-+.+.+|..+|.++ |.|..+++.+++.||.|||||||+|++++.|+-|-+.+| -.|.++.|.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 344456679999999999999999999998 788888888999999999999999999999999999999 455666666
Q ss_pred EEeccc
Q 014397 143 TNLAVA 148 (425)
Q Consensus 143 v~~~~~ 148 (425)
+.+-.+
T Consensus 124 c~vmpp 129 (214)
T KOG4208|consen 124 CHVMPP 129 (214)
T ss_pred eEEeCc
Confidence 666544
No 124
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.80 E-value=1e-08 Score=103.20 Aligned_cols=172 Identities=9% Similarity=-0.010 Sum_probs=129.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEEecc
Q 014397 68 PTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLAV 147 (425)
Q Consensus 68 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~~~~ 147 (425)
.+.+.|-+..+++++++.+++++|-.. .|.++.|..+.......|-++|+|....++.+|++.....+..|.+.+...-
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPG 387 (944)
T ss_pred chhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCC
Confidence 355667788999999999999998654 4666667666655555899999999999999999998877777877764432
Q ss_pred cCCCCCCC-------------------------------CCCCCcccceEEEeecCCcccHHHHHHHHhhcCCcee-eee
Q 014397 148 AGNSGNST-------------------------------NNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEE-GPL 195 (425)
Q Consensus 148 ~~~~~~~~-------------------------------~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~-v~i 195 (425)
...+.... .+.......+|||..||..+++.++.++|...-.|++ |.|
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 22211100 1112233467999999999999999999998888887 555
Q ss_pred eccCCCCCcceEEEEEeCCHHHHHHHHhc-CCCccCCeEEEEEEccc
Q 014397 196 GFDKQTGKPKGFALFVYKTAEGAQAALVD-PIKTVDGKQLNCRLADN 241 (425)
Q Consensus 196 ~~d~~~g~~kG~afV~F~~~~~A~~A~~~-~~~~~~gr~i~v~~a~~ 241 (425)
.+- -+++.++.|||+|..++++.+|+.. .++.+.-|.|.|.-...
T Consensus 468 t~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~ 513 (944)
T KOG4307|consen 468 TRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIAD 513 (944)
T ss_pred ccC-CcccccchhhheeccccccchhhhcccccccCceEEEeechhh
Confidence 444 5788899999999998877777666 46778888899876543
No 125
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.78 E-value=1.1e-08 Score=104.20 Aligned_cols=78 Identities=26% Similarity=0.336 Sum_probs=70.9
Q ss_pred ccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEcc
Q 014397 162 SLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLAD 240 (425)
Q Consensus 162 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a~ 240 (425)
-+++|||+.|+..++|.||.++|+.||+|.+|.++.. +++|||+....++|.+|+.++ +..+..+.|+|.|+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 4678999999999999999999999999999988765 889999999999999999997 699999999999997
Q ss_pred cCCCC
Q 014397 241 NKKAK 245 (425)
Q Consensus 241 ~~~~~ 245 (425)
.+-.+
T Consensus 494 g~G~k 498 (894)
T KOG0132|consen 494 GKGPK 498 (894)
T ss_pred cCCcc
Confidence 65333
No 126
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.76 E-value=2e-08 Score=89.09 Aligned_cols=77 Identities=26% Similarity=0.337 Sum_probs=69.8
Q ss_pred cceEEEeecCCcccHHHHHH----HHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEE
Q 014397 163 LRKIFVGNVPNDMSADKLLA----HFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCR 237 (425)
Q Consensus 163 ~~~l~V~nL~~~~te~~L~~----~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~ 237 (425)
..+|||.||+..+..++|+. +|++||.|.+|... .+.+.||.|||.|.+.+.|..|+..+ +.-|-|+.+.+.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 34999999999999999888 99999999999886 46788999999999999999999997 689999999999
Q ss_pred EcccC
Q 014397 238 LADNK 242 (425)
Q Consensus 238 ~a~~~ 242 (425)
+|..+
T Consensus 86 yA~s~ 90 (221)
T KOG4206|consen 86 YAKSD 90 (221)
T ss_pred cccCc
Confidence 99655
No 127
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.74 E-value=3.1e-08 Score=97.63 Aligned_cols=81 Identities=15% Similarity=0.270 Sum_probs=74.1
Q ss_pred ccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCC-CccCCeEEEEEEcc
Q 014397 162 SLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPI-KTVDGKQLNCRLAD 240 (425)
Q Consensus 162 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~-~~~~gr~i~v~~a~ 240 (425)
..+.|||.+|+..|...+|+.+|++||.|+-.+|+.+..+--.++|+||+..+.++|.+||+.|+ ++|+|+.|.|..++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 34679999999999999999999999999999999887777789999999999999999999985 89999999999886
Q ss_pred cC
Q 014397 241 NK 242 (425)
Q Consensus 241 ~~ 242 (425)
..
T Consensus 484 NE 485 (940)
T KOG4661|consen 484 NE 485 (940)
T ss_pred cC
Confidence 43
No 128
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.69 E-value=4.6e-08 Score=89.70 Aligned_cols=86 Identities=17% Similarity=0.290 Sum_probs=77.6
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEE
Q 014397 64 ADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVT 143 (425)
Q Consensus 64 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v 143 (425)
.....+.+.|||+|+.+.+|.++|..+|+.||.|..+.|..|+.++.+|+|+||+|.+.+.+++||+.....|.++.+.+
T Consensus 95 ~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 95 RQKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEV 174 (231)
T ss_pred hhhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCccccccccee
Confidence 45667788999999999999999999999999999999999999989999999999999999999994448999999998
Q ss_pred EecccC
Q 014397 144 NLAVAG 149 (425)
Q Consensus 144 ~~~~~~ 149 (425)
.+....
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 887653
No 129
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.66 E-value=7.9e-08 Score=87.93 Aligned_cols=83 Identities=20% Similarity=0.355 Sum_probs=74.7
Q ss_pred ccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEcc
Q 014397 162 SLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLAD 240 (425)
Q Consensus 162 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a~ 240 (425)
...+|+|.||++.|+++||+++|.+|+.++.+.|..| .+|.+.|.|-|.|+..++|.+|++.. +..|+|+.+.+..+.
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 3478999999999999999999999999999999998 58999999999999999999999996 699999999998886
Q ss_pred cCCCC
Q 014397 241 NKKAK 245 (425)
Q Consensus 241 ~~~~~ 245 (425)
.....
T Consensus 161 ~~~~~ 165 (243)
T KOG0533|consen 161 SPSQS 165 (243)
T ss_pred Ccccc
Confidence 55433
No 130
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.66 E-value=9.3e-08 Score=87.49 Aligned_cols=83 Identities=24% Similarity=0.424 Sum_probs=73.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTN 144 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~ 144 (425)
.+....+|+|.|||+.|+++||+++|++|++++.+.|-.++ ++++.|+|-|.|+..++|+.|++.++ ..++++.+.+.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 34455789999999999999999999999998888888885 89999999999999999999999998 78899998887
Q ss_pred ecccC
Q 014397 145 LAVAG 149 (425)
Q Consensus 145 ~~~~~ 149 (425)
.....
T Consensus 158 ~i~~~ 162 (243)
T KOG0533|consen 158 IISSP 162 (243)
T ss_pred EecCc
Confidence 76553
No 131
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.65 E-value=3e-08 Score=98.13 Aligned_cols=159 Identities=18% Similarity=0.142 Sum_probs=104.5
Q ss_pred cccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceE
Q 014397 63 IADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVT 141 (425)
Q Consensus 63 ~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~ 141 (425)
....+..+++|+|-|||.+|++++|+.+|+.||+|.+|+... ..++.+||+|-|..+|+.||++++ ..+.++.+
T Consensus 68 p~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~ 142 (549)
T KOG4660|consen 68 PSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKALNRREIAGKRI 142 (549)
T ss_pred CCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhh
Confidence 344567889999999999999999999999999999966543 457899999999999999999998 77887776
Q ss_pred EEEecccCCCCCCC--------------CCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceE
Q 014397 142 VTNLAVAGNSGNST--------------NNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGF 207 (425)
Q Consensus 142 ~v~~~~~~~~~~~~--------------~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~ 207 (425)
.............. .+...-....+++ .|+...+..-++..|+-++.++. +. ++.-+-.
T Consensus 143 k~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g-~l~P~~s~~~~~~~~~~~~~~~~-~~-----~~~~~hq 215 (549)
T KOG4660|consen 143 KRPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFG-MLSPTRSSILLEHISSVDGSSPG-RE-----TPLLNHQ 215 (549)
T ss_pred cCCCcccccchhcccchhhhhccchhhcCCCCCCcCCccee-eeccchhhhhhhcchhccCcccc-cc-----ccchhhh
Confidence 62221111110000 1111111222333 38888887666667777776654 22 2222336
Q ss_pred EEEEeCCHHHHHHHHhcCCCccCCeE
Q 014397 208 ALFVYKTAEGAQAALVDPIKTVDGKQ 233 (425)
Q Consensus 208 afV~F~~~~~A~~A~~~~~~~~~gr~ 233 (425)
-||+|.+..++..++......+.+..
T Consensus 216 ~~~~~~~~~s~a~~~~~~G~~~s~~~ 241 (549)
T KOG4660|consen 216 RFVEFADNRSYAFSEPRGGFLISNSS 241 (549)
T ss_pred hhhhhccccchhhcccCCceecCCCC
Confidence 68888888888555443334444444
No 132
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.65 E-value=4.6e-08 Score=89.69 Aligned_cols=85 Identities=26% Similarity=0.357 Sum_probs=78.2
Q ss_pred CCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEE
Q 014397 158 PVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCR 237 (425)
Q Consensus 158 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~ 237 (425)
....+.+.+||+|+.+.+|.++|+.+|+.||.|..|.|+.|+.++.+|+|+||+|.+.+.++.|+......|.++.|.|.
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVT 175 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceee
Confidence 34556789999999999999999999999999999999999999999999999999999999999965799999999999
Q ss_pred EcccC
Q 014397 238 LADNK 242 (425)
Q Consensus 238 ~a~~~ 242 (425)
+...+
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 88665
No 133
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.58 E-value=1.8e-07 Score=92.42 Aligned_cols=81 Identities=22% Similarity=0.411 Sum_probs=69.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEEecccC
Q 014397 70 QRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLAVAG 149 (425)
Q Consensus 70 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~~~~~~ 149 (425)
..+|||.|||.++++++|+++|..||.|+...|......+++.+|+||+|.+.++++.||+.....+.++.+.|+.....
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecccc
Confidence 34599999999999999999999999999988876543455559999999999999999999988889999988876553
Q ss_pred C
Q 014397 150 N 150 (425)
Q Consensus 150 ~ 150 (425)
.
T Consensus 368 ~ 368 (419)
T KOG0116|consen 368 F 368 (419)
T ss_pred c
Confidence 3
No 134
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.58 E-value=2.1e-08 Score=94.81 Aligned_cols=156 Identities=9% Similarity=0.056 Sum_probs=118.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCC---CCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEEecc
Q 014397 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKA---TGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLAV 147 (425)
Q Consensus 71 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~---~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~~~~ 147 (425)
..|.|.||.+.+|.++|+.||.-+|+|.+++|+.+.. -....-.|||.|.+...+..|..+.+++|.++.|+|....
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 4799999999999999999999999999999987432 1235568999999999999999998999999988886543
Q ss_pred cCCCCCCC---------------------------------------CCC---------CCcccceEEEeecCCcccHHH
Q 014397 148 AGNSGNST---------------------------------------NNP---------VDVSLRKIFVGNVPNDMSADK 179 (425)
Q Consensus 148 ~~~~~~~~---------------------------------------~~~---------~~~~~~~l~V~nL~~~~te~~ 179 (425)
........ .+. ...-.++|+|.+|+..+...+
T Consensus 88 ~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e 167 (479)
T KOG4676|consen 88 DEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPE 167 (479)
T ss_pred CCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchh
Confidence 22211110 000 001125699999999999999
Q ss_pred HHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccC
Q 014397 180 LLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVD 230 (425)
Q Consensus 180 L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~ 230 (425)
+.+.|+.+|+|....+... ...-+|-|+|........|+..++..+.
T Consensus 168 ~~e~f~r~Gev~ya~~ask----~~s~~c~~sf~~qts~~halr~~gre~k 214 (479)
T KOG4676|consen 168 SGESFERKGEVSYAHTASK----SRSSSCSHSFRKQTSSKHALRSHGRERK 214 (479)
T ss_pred hhhhhhhcchhhhhhhhcc----CCCcchhhhHhhhhhHHHHHHhcchhhh
Confidence 9999999999987766432 2245677999988888888888766554
No 135
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.56 E-value=7.9e-09 Score=106.59 Aligned_cols=165 Identities=19% Similarity=0.105 Sum_probs=127.7
Q ss_pred CCCCCeEEEcCCCCCCCHH-HHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEEe
Q 014397 67 DPTQRKLFIRGLGWDTTTE-GLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNL 145 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~-~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~~ 145 (425)
....+.+.+.++.+...+. ..+..|..++.|+.|++......-..--+.++++....+++.|.......+..+.+.+..
T Consensus 568 ~~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ 647 (881)
T KOG0128|consen 568 PLERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGL 647 (881)
T ss_pred hhhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCC
Confidence 3345567788887777666 467788999999999887632222222288999999999999998877888888888877
Q ss_pred cccCCCCCCCCCC--CCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHh
Q 014397 146 AVAGNSGNSTNNP--VDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALV 223 (425)
Q Consensus 146 ~~~~~~~~~~~~~--~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~ 223 (425)
+............ ...+..++||+||+..+.+++|...|..++.|+.|.|..++.+++.+|.|||+|..++++.+||.
T Consensus 648 ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~ 727 (881)
T KOG0128|consen 648 ADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVA 727 (881)
T ss_pred CCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhh
Confidence 7665543332222 22456789999999999999999999999999988888777889999999999999999999998
Q ss_pred cCCCccCC
Q 014397 224 DPIKTVDG 231 (425)
Q Consensus 224 ~~~~~~~g 231 (425)
.....+-+
T Consensus 728 f~d~~~~g 735 (881)
T KOG0128|consen 728 FRDSCFFG 735 (881)
T ss_pred hhhhhhhh
Confidence 86444333
No 136
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.55 E-value=1.6e-06 Score=87.75 Aligned_cols=127 Identities=11% Similarity=0.017 Sum_probs=84.7
Q ss_pred CCCCCCCCChHHHHHHHHhhchhhHHHHHHHhhhccchh-------------------------hhhhhh----cccCCC
Q 014397 18 DLESPNRLTPQDARKIVERLTSDQLLDVLSSAVARHDDV-------------------------LESVRS----IADADP 68 (425)
Q Consensus 18 ~~~~~~~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~----~~~~~~ 68 (425)
....++|+...++.+++..-+...+...++....-.... .+.... ......
T Consensus 353 G~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ 432 (944)
T KOG4307|consen 353 GRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGG 432 (944)
T ss_pred CceEEEecCcchHHHHHhcCchhhhhcceeecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCC
Confidence 335678888889999888776666654332221110000 000000 011223
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEe
Q 014397 69 TQRKLFIRGLGWDTTTEGLRSIFSAYGELEE-AVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNL 145 (425)
Q Consensus 69 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~-v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~ 145 (425)
....|||..||..+++.++.++|...-.|++ |.|... -+++.++.|||+|..++++.+|+...+ ..+..|.|.|..
T Consensus 433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred ccceEEeccCCccccccchhhhhhhhhhhhheeEeccC-CcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 4567999999999999999999999878887 444444 478889999999999999998888777 444556666644
No 137
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.52 E-value=2.6e-07 Score=87.22 Aligned_cols=86 Identities=27% Similarity=0.319 Sum_probs=77.0
Q ss_pred CCcccceEEEeecCCcccHHHHHHHHhhcCCce--------eeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCcc
Q 014397 159 VDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE--------EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTV 229 (425)
Q Consensus 159 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~--------~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~ 229 (425)
......+|||..|+..+++++|.++|.+|+.|+ .|.|.+|++|+++|+-|.|.|+|...|++||+.. ...|
T Consensus 62 ~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 62 DKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred cccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 345567899999999999999999999999885 3788999999999999999999999999999996 6889
Q ss_pred CCeEEEEEEcccCCC
Q 014397 230 DGKQLNCRLADNKKA 244 (425)
Q Consensus 230 ~gr~i~v~~a~~~~~ 244 (425)
.+.+|+|.+|+.+..
T Consensus 142 ~gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 142 CGNTIKVSLAERRTG 156 (351)
T ss_pred cCCCchhhhhhhccC
Confidence 999999999976653
No 138
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.51 E-value=2.7e-08 Score=94.92 Aligned_cols=156 Identities=19% Similarity=0.276 Sum_probs=122.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC--CCcCCceEEEEeccc
Q 014397 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS--KKIDGRVTVTNLAVA 148 (425)
Q Consensus 71 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~--~~~~gr~~~v~~~~~ 148 (425)
++|||+||...++..+|+.+|...-.-.+-.++. -.+|+||.+.+...|.+|++.++ .++.|+.+.+..+..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4699999999999999999997752211111221 24699999999999999999998 667888888888776
Q ss_pred CCCCCCCCCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeee-ccCCCCCcceEEEEEeCCHHHHHHHHhcC-C
Q 014397 149 GNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLG-FDKQTGKPKGFALFVYKTAEGAQAALVDP-I 226 (425)
Q Consensus 149 ~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~-~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~ 226 (425)
+.. .++++-|.|+|....|+.|..++.+|+.|+.|... .|.+ .-..-|+|.+.+.++.||.++ .
T Consensus 76 kkq----------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e----tavvnvty~~~~~~~~ai~kl~g 141 (584)
T KOG2193|consen 76 KKQ----------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE----TAVVNVTYSAQQQHRQAIHKLNG 141 (584)
T ss_pred HHH----------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH----HHHHHHHHHHHHHHHHHHHhhcc
Confidence 543 33669999999999999999999999999988653 3333 223457889999999999997 5
Q ss_pred CccCCeEEEEEEcccCCCCC
Q 014397 227 KTVDGKQLNCRLADNKKAKP 246 (425)
Q Consensus 227 ~~~~gr~i~v~~a~~~~~~~ 246 (425)
..|....++|.+........
T Consensus 142 ~Q~en~~~k~~YiPdeq~~q 161 (584)
T KOG2193|consen 142 PQLENQHLKVGYIPDEQNAQ 161 (584)
T ss_pred hHhhhhhhhcccCchhhhhc
Confidence 88999999998886554433
No 139
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.49 E-value=1.4e-07 Score=84.74 Aligned_cols=82 Identities=32% Similarity=0.514 Sum_probs=71.7
Q ss_pred cccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceE
Q 014397 63 IADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVT 141 (425)
Q Consensus 63 ~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~ 141 (425)
+.+.+...-+||++.|..+++++-|-..|.+|-.....++++|+.|++++||+||.|.+.+++..|+++++ +.+..|.|
T Consensus 183 l~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpi 262 (290)
T KOG0226|consen 183 LAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPI 262 (290)
T ss_pred cccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchh
Confidence 34455566789999999999999999999999988899999999999999999999999999999999999 55565655
Q ss_pred EEE
Q 014397 142 VTN 144 (425)
Q Consensus 142 ~v~ 144 (425)
.+.
T Consensus 263 klR 265 (290)
T KOG0226|consen 263 KLR 265 (290)
T ss_pred Hhh
Confidence 544
No 140
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.43 E-value=6.9e-07 Score=83.68 Aligned_cols=81 Identities=26% Similarity=0.278 Sum_probs=71.9
Q ss_pred CcccceEEEeecCCcccHHHHHHHHhhcCCcee--------eeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCC-CccC
Q 014397 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEE--------GPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPI-KTVD 230 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~--------v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~-~~~~ 230 (425)
....+.|||++||.++|.+++.++|++||.|.+ |+|.++. .|+.||-|++.|--.++..-|++.++ ..|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 344567999999999999999999999998853 7888884 59999999999999999999999984 8899
Q ss_pred CeEEEEEEccc
Q 014397 231 GKQLNCRLADN 241 (425)
Q Consensus 231 gr~i~v~~a~~ 241 (425)
|++|+|+.|+-
T Consensus 210 g~~~rVerAkf 220 (382)
T KOG1548|consen 210 GKKLRVERAKF 220 (382)
T ss_pred CcEEEEehhhh
Confidence 99999998853
No 141
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.35 E-value=1.9e-06 Score=80.64 Aligned_cols=75 Identities=20% Similarity=0.292 Sum_probs=65.9
Q ss_pred cceEEEeecCCcccHHHHHHHHhhcC--CceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEE
Q 014397 163 LRKIFVGNVPNDMSADKLLAHFACYG--EIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCR 237 (425)
Q Consensus 163 ~~~l~V~nL~~~~te~~L~~~F~~~G--~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~ 237 (425)
..+|||+||-|++|++||.+.+...| .+.+++++.++.+|.+||||+|...+..+.++.++.+ .++|+|+.-.|.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 35799999999999999999998776 5678899999999999999999999999999999988 588999765554
No 142
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.34 E-value=3.3e-06 Score=66.34 Aligned_cols=66 Identities=24% Similarity=0.281 Sum_probs=58.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhc--CCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCc
Q 014397 71 RKLFIRGLGWDTTTEGLRSIFSAY--GELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKI 136 (425)
Q Consensus 71 ~~lfV~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~ 136 (425)
+||.|+|||...|.++|.+++... |...-+.+..|..+..+.|||||.|.++++|.+..+..+ ..|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w 70 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKW 70 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCcc
Confidence 689999999999999999998763 567778888898899999999999999999999998877 444
No 143
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.32 E-value=2.6e-07 Score=81.25 Aligned_cols=76 Identities=17% Similarity=0.143 Sum_probs=66.9
Q ss_pred ccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEc
Q 014397 162 SLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLA 239 (425)
Q Consensus 162 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a 239 (425)
..++|||.||...++|+-|.++|-+.|.|.+|.|..++ .++.| ||||+|+++-...-|++.+ ...+.+++|.|.+-
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 34789999999999999999999999999999998874 56777 9999999999999999986 47888888777654
No 144
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.27 E-value=1e-06 Score=78.94 Aligned_cols=71 Identities=23% Similarity=0.449 Sum_probs=62.0
Q ss_pred ceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEcccC
Q 014397 164 RKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLADNK 242 (425)
Q Consensus 164 ~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a~~~ 242 (425)
.++||++|++.+.+.+|++||..||.|.+|.+. .+|+||+|++..+|..||..+ ...|.+..+.|++++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 469999999999999999999999999998774 469999999999999999886 47777777777777654
No 145
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.25 E-value=5.3e-06 Score=65.21 Aligned_cols=79 Identities=16% Similarity=0.155 Sum_probs=64.1
Q ss_pred ceEEEeecCCcccHHHHHHHHhhc--CCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccC----CeEEEE
Q 014397 164 RKIFVGNVPNDMSADKLLAHFACY--GEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVD----GKQLNC 236 (425)
Q Consensus 164 ~~l~V~nL~~~~te~~L~~~F~~~--G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~----gr~i~v 236 (425)
++|.|+|||...|.++|.+++... |...-+-++.|..+....|||||.|.++++|.+-.+.. +..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999998654 56667888889889999999999999999999888773 33332 456677
Q ss_pred EEcccC
Q 014397 237 RLADNK 242 (425)
Q Consensus 237 ~~a~~~ 242 (425)
.+|+.+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 777643
No 146
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.25 E-value=8e-06 Score=72.18 Aligned_cols=88 Identities=23% Similarity=0.281 Sum_probs=67.0
Q ss_pred CcccceEEEeecCCcccHHHHHHHHhhcCCceeeeee-ccCCCCCcceEEEEEeCCHHHHHHHHhcCC-CccC---CeEE
Q 014397 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLG-FDKQTGKPKGFALFVYKTAEGAQAALVDPI-KTVD---GKQL 234 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~-~d~~~g~~kG~afV~F~~~~~A~~A~~~~~-~~~~---gr~i 234 (425)
....++|||.+||.++..-+|..+|..|---+.+.|- .++.....+=+|||+|.+.++|.+|+..++ ..|| +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 3457899999999999999999999998555544432 333333456799999999999999999974 6665 4778
Q ss_pred EEEEcccCCCCCC
Q 014397 235 NCRLADNKKAKPM 247 (425)
Q Consensus 235 ~v~~a~~~~~~~~ 247 (425)
++++++.+....+
T Consensus 111 hiElAKSNtK~kr 123 (284)
T KOG1457|consen 111 HIELAKSNTKRKR 123 (284)
T ss_pred EeeehhcCccccc
Confidence 8888876654443
No 147
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.25 E-value=8e-07 Score=88.22 Aligned_cols=73 Identities=27% Similarity=0.410 Sum_probs=63.9
Q ss_pred CCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCC-CccCCeEEE
Q 014397 158 PVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPI-KTVDGKQLN 235 (425)
Q Consensus 158 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~-~~~~gr~i~ 235 (425)
+.+....+|+|-|||..|++++|+++|+.||+|+.|+--. ..++.+||+|.|..+|++|+++++ .+|.++.|+
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3456678999999999999999999999999999965543 347999999999999999999975 788888887
No 148
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.15 E-value=3.1e-06 Score=86.02 Aligned_cols=84 Identities=20% Similarity=0.279 Sum_probs=71.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecC---CCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDK---ATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVT 141 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~---~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~ 141 (425)
-++..++|||+||++.++|+.|...|..||+|.+|+|+.-+ +..+.+-|+||.|-+..+|++|++.++ ..+....+
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 36678889999999999999999999999999999998753 234556699999999999999999999 77777888
Q ss_pred EEEecccC
Q 014397 142 VTNLAVAG 149 (425)
Q Consensus 142 ~v~~~~~~ 149 (425)
.+-|...-
T Consensus 250 K~gWgk~V 257 (877)
T KOG0151|consen 250 KLGWGKAV 257 (877)
T ss_pred eecccccc
Confidence 88887443
No 149
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.02 E-value=6.2e-06 Score=78.05 Aligned_cols=84 Identities=19% Similarity=0.255 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCee--------EEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcC
Q 014397 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELE--------EAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKID 137 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~ 137 (425)
.....+|||-.||..+++++|.++|.+|+.|. .|+|-+|++|.+.|+-|.|.|.+...|+.||..++ +.++
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 44567899999999999999999999999876 47788899999999999999999999999999998 8999
Q ss_pred CceEEEEecccCC
Q 014397 138 GRVTVTNLAVAGN 150 (425)
Q Consensus 138 gr~~~v~~~~~~~ 150 (425)
+..|.|.++....
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9888887776544
No 150
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.95 E-value=1.1e-05 Score=64.88 Aligned_cols=71 Identities=18% Similarity=0.234 Sum_probs=44.3
Q ss_pred ceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC------CCccCCeEEEEE
Q 014397 164 RKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP------IKTVDGKQLNCR 237 (425)
Q Consensus 164 ~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~------~~~~~gr~i~v~ 237 (425)
..|+|.+++..++.++|+++|++|+.|..|.+... .-.|||.|.++++|++|++++ ...+.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 35889999999999999999999999999998765 237999999999999999874 245677777666
Q ss_pred Ecc
Q 014397 238 LAD 240 (425)
Q Consensus 238 ~a~ 240 (425)
...
T Consensus 76 vLe 78 (105)
T PF08777_consen 76 VLE 78 (105)
T ss_dssp ---
T ss_pred ECC
Confidence 543
No 151
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.90 E-value=3.4e-05 Score=74.46 Aligned_cols=71 Identities=24% Similarity=0.230 Sum_probs=59.3
Q ss_pred CCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeecc---CCCCC----------cceEEEEEeCCHHHHHHHHh
Q 014397 157 NPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFD---KQTGK----------PKGFALFVYKTAEGAQAALV 223 (425)
Q Consensus 157 ~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d---~~~g~----------~kG~afV~F~~~~~A~~A~~ 223 (425)
..+....++|.+.|||.+-.-+.|.++|..+|.|+.|+|+.. .++.+ .+=+|+|+|+..+.|.+|.+
T Consensus 225 ~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 225 DEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred cccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 345567899999999999999999999999999999999876 33221 14579999999999999999
Q ss_pred cCCC
Q 014397 224 DPIK 227 (425)
Q Consensus 224 ~~~~ 227 (425)
.++.
T Consensus 305 ~~~~ 308 (484)
T KOG1855|consen 305 LLNP 308 (484)
T ss_pred hhch
Confidence 9753
No 152
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.90 E-value=1.6e-05 Score=81.00 Aligned_cols=82 Identities=15% Similarity=0.272 Sum_probs=72.2
Q ss_pred CcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccC---CCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEE
Q 014397 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDK---QTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLN 235 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~---~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~ 235 (425)
+..++.|||.||+..++++.|...|..||.|..|+|+..+ +..+.+-++||.|.+..+|++|++.+ +..+....++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4567889999999999999999999999999999998754 34556789999999999999999997 5888999999
Q ss_pred EEEccc
Q 014397 236 CRLADN 241 (425)
Q Consensus 236 v~~a~~ 241 (425)
+.|.+.
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 988843
No 153
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.88 E-value=7.8e-06 Score=76.59 Aligned_cols=77 Identities=18% Similarity=0.328 Sum_probs=66.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEe
Q 014397 69 TQRKLFIRGLGWDTTTEGLRSIFSAYG--ELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNL 145 (425)
Q Consensus 69 ~~~~lfV~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~ 145 (425)
....+||+||-|.+|++||.+.+-..| .|.++++..++.++.|||||+|...+..++++.++.+. ++|.|+.-.|..
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 345599999999999999999987766 57788899999999999999999999999999999988 778877555543
No 154
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.83 E-value=6.7e-05 Score=56.33 Aligned_cols=70 Identities=13% Similarity=0.198 Sum_probs=46.1
Q ss_pred CeEEEcCCCCCCCHHHHH----HHHhhcC-CeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEE
Q 014397 71 RKLFIRGLGWDTTTEGLR----SIFSAYG-ELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTN 144 (425)
Q Consensus 71 ~~lfV~nLp~~~te~~l~----~~F~~~G-~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~ 144 (425)
..|+|.|||.+.+...|+ .++..|| +|.+|. .+.|+|.|.+++.|++|++.+. ..+.|+.|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 469999999999877655 5556675 565541 2479999999999999999988 88999999999
Q ss_pred ecccCC
Q 014397 145 LAVAGN 150 (425)
Q Consensus 145 ~~~~~~ 150 (425)
+.....
T Consensus 73 ~~~~~r 78 (90)
T PF11608_consen 73 FSPKNR 78 (90)
T ss_dssp SS--S-
T ss_pred EcCCcc
Confidence 885543
No 155
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.81 E-value=1.7e-05 Score=75.34 Aligned_cols=80 Identities=24% Similarity=0.439 Sum_probs=69.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEEecccC
Q 014397 70 QRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLAVAG 149 (425)
Q Consensus 70 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~~~~~~ 149 (425)
.+..+|.+|++++++++|+++|..++.|..+++..++.++.+++|+||+|.+.+.+.+++......+.++.+.+......
T Consensus 185 ~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred ccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCCCC
Confidence 34445999999999999999999999999999999999999999999999999999999988337777787777766543
No 156
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=97.80 E-value=0.00042 Score=73.10 Aligned_cols=13 Identities=15% Similarity=0.353 Sum_probs=5.5
Q ss_pred CCcccEEEEEecc
Q 014397 109 GKSKGYGFITFKH 121 (425)
Q Consensus 109 g~skG~aFV~F~~ 121 (425)
++.++|+--.|++
T Consensus 899 g~q~~~~g~kfsd 911 (1282)
T KOG0921|consen 899 GTQRKFAGNKFSD 911 (1282)
T ss_pred cchhhcccccccc
Confidence 3444444444444
No 157
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.74 E-value=2.1e-05 Score=75.85 Aligned_cols=69 Identities=16% Similarity=0.289 Sum_probs=59.1
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeec---CCCCC----------cccEEEEEecchHHHHHHHhc
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILD---KATGK----------SKGYGFITFKHIDGAMLALKE 131 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---~~~g~----------skG~aFV~F~~~e~A~~Al~~ 131 (425)
..+...++|.+-|||.+-..+.|++||..+|.|.+|+|+.- +.+.+ .+-||||+|...+.|.+|.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 33457899999999999999999999999999999999875 33221 367899999999999999998
Q ss_pred CC
Q 014397 132 PS 133 (425)
Q Consensus 132 ~~ 133 (425)
++
T Consensus 306 ~~ 307 (484)
T KOG1855|consen 306 LN 307 (484)
T ss_pred hc
Confidence 86
No 158
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.72 E-value=0.00017 Score=67.56 Aligned_cols=117 Identities=16% Similarity=0.259 Sum_probs=78.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHH------HHHHhhcCCeeEEEEeecCCCCC-cccEE--EEEecchHHHHHHHhcCC-CCc
Q 014397 67 DPTQRKLFIRGLGWDTTTEGL------RSIFSAYGELEEAVVILDKATGK-SKGYG--FITFKHIDGAMLALKEPS-KKI 136 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~l------~~~F~~~G~i~~v~i~~~~~~g~-skG~a--FV~F~~~e~A~~Al~~~~-~~~ 136 (425)
....+-|||-+|++.+..+++ .++|.+||.|..|.|-+...+-. ..+.+ ||+|.+.|+|..||.+.+ ..+
T Consensus 111 VvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~ 190 (480)
T COG5175 111 VVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL 190 (480)
T ss_pred eeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc
Confidence 334566999999999877762 48899999998877755421111 12234 999999999999999998 888
Q ss_pred CCceEEEEecccCCCCCCCCCCCCcccceEEEeecCC---cccHHHHHHH
Q 014397 137 DGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPN---DMSADKLLAH 183 (425)
Q Consensus 137 ~gr~~~v~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~---~~te~~L~~~ 183 (425)
+||.|...+-..+--..-.....-....++|+..--. ..|.++|...
T Consensus 191 DGr~lkatYGTTKYCtsYLRn~~CpNp~CMyLHEpg~e~Ds~tK~el~n~ 240 (480)
T COG5175 191 DGRVLKATYGTTKYCTSYLRNAVCPNPDCMYLHEPGPEKDSLTKDELCNS 240 (480)
T ss_pred cCceEeeecCchHHHHHHHcCCCCCCCCeeeecCCCcccccccHHHHhhh
Confidence 9999998876543321111222333345666654432 3567777644
No 159
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.62 E-value=0.00015 Score=54.46 Aligned_cols=69 Identities=17% Similarity=0.236 Sum_probs=46.4
Q ss_pred ceEEEeecCCcccHHH----HHHHHhhcC-CceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEE
Q 014397 164 RKIFVGNVPNDMSADK----LLAHFACYG-EIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCR 237 (425)
Q Consensus 164 ~~l~V~nL~~~~te~~----L~~~F~~~G-~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~ 237 (425)
..|+|.|||.+.+... |++++..|| .|.+|. .+.|+|.|.+.+.|.+|.+.+ +..+-|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4699999999988655 567777885 555541 358999999999999999997 688999999999
Q ss_pred EcccC
Q 014397 238 LADNK 242 (425)
Q Consensus 238 ~a~~~ 242 (425)
+....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 88443
No 160
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.57 E-value=0.00011 Score=59.00 Aligned_cols=57 Identities=28% Similarity=0.399 Sum_probs=38.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC
Q 014397 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS 133 (425)
Q Consensus 71 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~ 133 (425)
+.|+|.+++..++-++|+++|+.|+.|.-|.+..... .|||.|.++++|++|++.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHH
Confidence 4689999999999999999999999999888876432 79999999999999998755
No 161
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.54 E-value=0.0002 Score=49.82 Aligned_cols=52 Identities=21% Similarity=0.325 Sum_probs=42.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHH
Q 014397 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLAL 129 (425)
Q Consensus 71 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al 129 (425)
+.|-|.+.+.+.. ++|+++|++||+|+++.+-.. .-+.||+|++..+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 5688999987765 456679999999999887522 228999999999999996
No 162
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.53 E-value=0.00025 Score=49.35 Aligned_cols=52 Identities=31% Similarity=0.497 Sum_probs=41.9
Q ss_pred ceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHH
Q 014397 164 RKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAAL 222 (425)
Q Consensus 164 ~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~ 222 (425)
+.|-|.+.+.+..+. |..+|.+||+|.++.+... +-+.+|+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 467888888776654 5558889999999888632 458999999999999995
No 163
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.00011 Score=73.23 Aligned_cols=118 Identities=19% Similarity=0.188 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCC--CHH----HHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCc-
Q 014397 68 PTQRKLFIRGLGWDT--TTE----GLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGR- 139 (425)
Q Consensus 68 ~~~~~lfV~nLp~~~--te~----~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr- 139 (425)
--...|+|-|+|.-- ..+ -|.++|+++|+|..+.+..+.. +.++||.|++|++..+|++|++.++ ..++-+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 455679999998432 222 2457899999999999888864 5599999999999999999999998 555433
Q ss_pred eEEEEecccCCCCCCCCCCCCccc--ceEEEeecCCcccHHHHHHHHhh
Q 014397 140 VTVTNLAVAGNSGNSTNNPVDVSL--RKIFVGNVPNDMSADKLLAHFAC 186 (425)
Q Consensus 140 ~~~v~~~~~~~~~~~~~~~~~~~~--~~l~V~nL~~~~te~~L~~~F~~ 186 (425)
...+..-..-........+=.... .-.-+++|-+++++++.++.|.-
T Consensus 135 tf~v~~f~d~eky~s~~dew~~pe~q~fk~~~~L~~WL~d~~~RDQf~v 183 (698)
T KOG2314|consen 135 TFFVRLFKDFEKYESISDEWREPEKQTFKDSSDLRSWLMDDKCRDQFVV 183 (698)
T ss_pred eEEeehhhhHHHhcCCccccCCcccccccchHHHHHHHhCccccceEEE
Confidence 333333222111111111101111 11224566666666666666643
No 164
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.35 E-value=0.00042 Score=62.88 Aligned_cols=86 Identities=24% Similarity=0.285 Sum_probs=72.8
Q ss_pred HHHHHHhcCC-CCcCCceEEEEecccCCCCCCCCCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCC
Q 014397 124 GAMLALKEPS-KKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTG 202 (425)
Q Consensus 124 ~A~~Al~~~~-~~~~gr~~~v~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g 202 (425)
-|+.|-.+++ ....++.+.|.++.. ..|+|.||+..++-|.|++.|+.||+|+...++.| ..+
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~---------------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~ 69 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH---------------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRG 69 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc---------------ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccc
Confidence 3455555566 677889999999865 56999999999999999999999999998777777 578
Q ss_pred CcceEEEEEeCCHHHHHHHHhcC
Q 014397 203 KPKGFALFVYKTAEGAQAALVDP 225 (425)
Q Consensus 203 ~~kG~afV~F~~~~~A~~A~~~~ 225 (425)
+..+-.+|+|...-.|.+|+..+
T Consensus 70 k~t~eg~v~~~~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 70 KPTREGIVEFAKKPNARKAARRC 92 (275)
T ss_pred cccccchhhhhcchhHHHHHHHh
Confidence 88899999999999999888775
No 165
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.27 E-value=0.0016 Score=51.63 Aligned_cols=78 Identities=21% Similarity=0.240 Sum_probs=52.5
Q ss_pred ccceEEEeecCCcccHHHHHHHHhhcCCceeee-eeccCC------CCCcceEEEEEeCCHHHHHHHHhcCCCccCCeE-
Q 014397 162 SLRKIFVGNVPNDMSADKLLAHFACYGEIEEGP-LGFDKQ------TGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQ- 233 (425)
Q Consensus 162 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~-i~~d~~------~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~- 233 (425)
..+.|.|-+.|.. ....|.++|++||+|.+.. +.++.. .-....+..|+|+++.+|++||.++...|+|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 3456888888888 5567888999999998764 221100 012245899999999999999999999998854
Q ss_pred EEEEEcc
Q 014397 234 LNCRLAD 240 (425)
Q Consensus 234 i~v~~a~ 240 (425)
+-|.+.+
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 4577663
No 166
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.16 E-value=0.00066 Score=63.69 Aligned_cols=82 Identities=20% Similarity=0.331 Sum_probs=63.7
Q ss_pred cccceEEEeecCCcccHHH----H--HHHHhhcCCceeeeeeccCCCCCc-ceE--EEEEeCCHHHHHHHHhcC-CCccC
Q 014397 161 VSLRKIFVGNVPNDMSADK----L--LAHFACYGEIEEGPLGFDKQTGKP-KGF--ALFVYKTAEGAQAALVDP-IKTVD 230 (425)
Q Consensus 161 ~~~~~l~V~nL~~~~te~~----L--~~~F~~~G~v~~v~i~~d~~~g~~-kG~--afV~F~~~~~A~~A~~~~-~~~~~ 230 (425)
.+..-+||-.|+..+.+|+ | .++|.+||.|..|.|-+...+-.+ .+. .||+|.+.|+|.+||++. ...++
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 3446689999999887776 3 479999999999888655322111 122 499999999999999996 68999
Q ss_pred CeEEEEEEcccC
Q 014397 231 GKQLNCRLADNK 242 (425)
Q Consensus 231 gr~i~v~~a~~~ 242 (425)
||.|+..+-+.+
T Consensus 192 Gr~lkatYGTTK 203 (480)
T COG5175 192 GRVLKATYGTTK 203 (480)
T ss_pred CceEeeecCchH
Confidence 999999887655
No 167
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.96 E-value=0.00089 Score=60.75 Aligned_cols=71 Identities=18% Similarity=0.255 Sum_probs=58.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCC--------CCccc----EEEEEecchHHHHHHHhcCC-CC
Q 014397 69 TQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKAT--------GKSKG----YGFITFKHIDGAMLALKEPS-KK 135 (425)
Q Consensus 69 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~--------g~skG----~aFV~F~~~e~A~~Al~~~~-~~ 135 (425)
..-.||+++||+.+.-..|+++|+.||+|-.|.+.....+ +.++. -++|+|.+...|.++.+.++ ..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4567999999999999999999999999999988766544 23332 35799999999999999888 67
Q ss_pred cCCc
Q 014397 136 IDGR 139 (425)
Q Consensus 136 ~~gr 139 (425)
|.|+
T Consensus 153 Iggk 156 (278)
T KOG3152|consen 153 IGGK 156 (278)
T ss_pred cCCC
Confidence 7666
No 168
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.89 E-value=0.0038 Score=49.43 Aligned_cols=77 Identities=17% Similarity=0.228 Sum_probs=51.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecC-------CCCCcccEEEEEecchHHHHHHHhcCCCCcCCceE
Q 014397 69 TQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDK-------ATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVT 141 (425)
Q Consensus 69 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-------~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~ 141 (425)
..+.|.|-+.|.. ....|.+.|++||.|.+..-+... ..........|+|.++.+|++||++....+.+..+
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 3466899999988 667799999999999876511110 00112338999999999999999999888887654
Q ss_pred E-EEec
Q 014397 142 V-TNLA 146 (425)
Q Consensus 142 ~-v~~~ 146 (425)
. |.+.
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 4 5554
No 169
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.71 E-value=0.0027 Score=63.24 Aligned_cols=68 Identities=24% Similarity=0.301 Sum_probs=61.3
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHh-hcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhc
Q 014397 64 ADADPTQRKLFIRGLGWDTTTEGLRSIFS-AYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131 (425)
Q Consensus 64 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~ 131 (425)
.......+||||+.||.-+|.++|-.+|+ -||.|.-|-|=.|++-+-.||-+=|+|.+..+-.+||+.
T Consensus 364 sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 364 NQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 34456789999999999999999999999 599999998888877888999999999999999999976
No 170
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.65 E-value=0.01 Score=49.94 Aligned_cols=60 Identities=32% Similarity=0.340 Sum_probs=46.4
Q ss_pred HHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEEEcccCCCC
Q 014397 178 DKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAK 245 (425)
Q Consensus 178 ~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~~a~~~~~~ 245 (425)
++|.+.|+.||+|.=|++..+ .-.|+|.+-+.|.+|+.....++.|+.|+|+..++.+.+
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpdW~~ 110 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPDWLK 110 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE-------
T ss_pred HHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCCccHHH
Confidence 367788899999988888765 368999999999999999999999999999999877553
No 171
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.64 E-value=0.012 Score=42.11 Aligned_cols=54 Identities=26% Similarity=0.308 Sum_probs=44.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhc---CCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcC
Q 014397 71 RKLFIRGLGWDTTTEGLRSIFSAY---GELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEP 132 (425)
Q Consensus 71 ~~lfV~nLp~~~te~~l~~~F~~~---G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~ 132 (425)
.+|+|.++. +++.++|+.+|..| .....|..|-|. .|-|.|.+.+.|.+||..+
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 469999995 58899999999999 134577888775 6999999999999999764
No 172
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.63 E-value=0.00085 Score=61.04 Aligned_cols=62 Identities=23% Similarity=0.316 Sum_probs=49.8
Q ss_pred HHHHHHh-hcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEeccc
Q 014397 86 GLRSIFS-AYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAVA 148 (425)
Q Consensus 86 ~l~~~F~-~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~~ 148 (425)
+|...|+ +||+|++++|..+. .-..+|-+||.|..+|+|++|++.++ ..|.+++|...+...
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 3444444 89999999877653 45678899999999999999999999 778899888887643
No 173
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.60 E-value=0.0011 Score=60.38 Aligned_cols=66 Identities=23% Similarity=0.317 Sum_probs=52.3
Q ss_pred HHHHHHHh-hcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEcccCCC
Q 014397 178 DKLLAHFA-CYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLADNKKA 244 (425)
Q Consensus 178 ~~L~~~F~-~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a~~~~~ 244 (425)
++|...|+ +||+|+++.|..+. .-.-+|-+||.|..+++|++|++.+ +..++|++|.+.+......
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~ 150 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDF 150 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCch
Confidence 44444444 89999999776553 3345889999999999999999997 5999999999998865543
No 174
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.60 E-value=0.0034 Score=62.78 Aligned_cols=72 Identities=17% Similarity=0.213 Sum_probs=58.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhh--cCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC---CCcCCceEE
Q 014397 68 PTQRKLFIRGLGWDTTTEGLRSIFSA--YGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS---KKIDGRVTV 142 (425)
Q Consensus 68 ~~~~~lfV~nLp~~~te~~l~~~F~~--~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~---~~~~gr~~~ 142 (425)
.+.|.|.|+.||..+.+|+|+.||+. |-++.+|.+..+. -=||+|++..||++|.+.+. ++|.++.|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 35667889999999999999999975 7788899888765 36999999999999988765 667777665
Q ss_pred EEec
Q 014397 143 TNLA 146 (425)
Q Consensus 143 v~~~ 146 (425)
..+.
T Consensus 246 ARIK 249 (684)
T KOG2591|consen 246 ARIK 249 (684)
T ss_pred hhhh
Confidence 5443
No 175
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.46 E-value=0.0032 Score=59.66 Aligned_cols=115 Identities=16% Similarity=0.258 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHH---HHHhhcCCeeEEEEeecCC--CC-CcccEEEEEecchHHHHHHHhcCC-CCcCCce
Q 014397 68 PTQRKLFIRGLGWDTTTEGLR---SIFSAYGELEEAVVILDKA--TG-KSKGYGFITFKHIDGAMLALKEPS-KKIDGRV 140 (425)
Q Consensus 68 ~~~~~lfV~nLp~~~te~~l~---~~F~~~G~i~~v~i~~~~~--~g-~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~ 140 (425)
...+.+||-.|+..+..+++. +.|.+||.|.+|.+..+.- +. .....++|+|...|+|..||...+ ..++++.
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 445669999999888666654 5788999999998887651 11 122348999999999999999888 6667777
Q ss_pred EEEEecccCCCCCCCCCCCCcccceEEEeecCC---cccHHHHHH
Q 014397 141 TVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPN---DMSADKLLA 182 (425)
Q Consensus 141 ~~v~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~---~~te~~L~~ 182 (425)
+...+...................++|+..+.. .+|.+|++.
T Consensus 155 lka~~gttkycs~~l~~~~c~~~~cmylhe~~~~~Ds~~k~e~~~ 199 (327)
T KOG2068|consen 155 LKASLGTTKYCSFYLRNDICQNPDCMYLHEIGDQEDSFTKDEMKS 199 (327)
T ss_pred hHHhhCCCcchhHHhhhhcccCccccccccccccccccchHHHHH
Confidence 665555443332222222333334677765543 345555543
No 176
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.42 E-value=0.019 Score=41.06 Aligned_cols=55 Identities=25% Similarity=0.204 Sum_probs=44.6
Q ss_pred cceEEEeecCCcccHHHHHHHHhhc---CCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC
Q 014397 163 LRKIFVGNVPNDMSADKLLAHFACY---GEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP 225 (425)
Q Consensus 163 ~~~l~V~nL~~~~te~~L~~~F~~~---G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~ 225 (425)
..+|+|.++. +++.++|+.+|..| .....|..+.|. .|-|.|.+.+.|.+||..+
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 3579999984 57888999999998 235578888774 5899999999999999753
No 177
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.42 E-value=0.0094 Score=59.89 Aligned_cols=75 Identities=21% Similarity=0.245 Sum_probs=57.5
Q ss_pred ceEEEeecCCcc------cHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCcc-CCeEEE
Q 014397 164 RKIFVGNVPNDM------SADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTV-DGKQLN 235 (425)
Q Consensus 164 ~~l~V~nL~~~~------te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~-~gr~i~ 235 (425)
..|+|.|+|.-- -..-|..+|+++|+|..+.++.+.+ +.++||.|++|.+..+|+.|++.+ ++.| ..+++.
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 567788877532 2234678899999999999998855 449999999999999999999996 3444 456666
Q ss_pred EEEc
Q 014397 236 CRLA 239 (425)
Q Consensus 236 v~~a 239 (425)
|..-
T Consensus 138 v~~f 141 (698)
T KOG2314|consen 138 VRLF 141 (698)
T ss_pred eehh
Confidence 6544
No 178
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.38 E-value=0.0088 Score=45.08 Aligned_cols=54 Identities=17% Similarity=0.312 Sum_probs=41.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC
Q 014397 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS 133 (425)
Q Consensus 71 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~ 133 (425)
...+|. +|.++...||.++|+.||.|. |..+.|. .|||.....+.|..++..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 345555 999999999999999999984 5666664 79999999999999988765
No 179
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.32 E-value=0.014 Score=49.15 Aligned_cols=57 Identities=25% Similarity=0.323 Sum_probs=45.9
Q ss_pred HHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEEecccCC
Q 014397 86 GLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLAVAGN 150 (425)
Q Consensus 86 ~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~~~~~~~ 150 (425)
+|.+.|+.||+|.-++++.+ .-+|+|.+-++|.+||+....+++++.+.+.+..+..
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPDW 108 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE-----
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCCccH
Confidence 56778899999988888766 4899999999999999999999999999999887644
No 180
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=96.22 E-value=0.05 Score=51.61 Aligned_cols=6 Identities=0% Similarity=0.185 Sum_probs=2.4
Q ss_pred HHHHHH
Q 014397 179 KLLAHF 184 (425)
Q Consensus 179 ~L~~~F 184 (425)
+|...|
T Consensus 244 ei~~~~ 249 (465)
T KOG3973|consen 244 EIQSIL 249 (465)
T ss_pred HHHHHH
Confidence 344443
No 181
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.20 E-value=0.007 Score=58.18 Aligned_cols=77 Identities=16% Similarity=0.083 Sum_probs=63.7
Q ss_pred ceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCC---CCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEEEcc
Q 014397 164 RKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQT---GKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLAD 240 (425)
Q Consensus 164 ~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~---g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~~a~ 240 (425)
..|.|.||..++|.|++..+|.-.|+|.++.|+-...+ ....-.|||.|.|.+.+..|-...++.|-++.|.|..+-
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 47899999999999999999999999999998864322 234568999999999999887766888888888776653
No 182
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.11 E-value=0.013 Score=54.24 Aligned_cols=64 Identities=14% Similarity=0.118 Sum_probs=50.6
Q ss_pred HHHHHHHHhhcCCceeeeeeccCCCCCcc-eEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEcc
Q 014397 177 ADKLLAHFACYGEIEEGPLGFDKQTGKPK-GFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLAD 240 (425)
Q Consensus 177 e~~L~~~F~~~G~v~~v~i~~d~~~g~~k-G~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a~ 240 (425)
++++++.+++||.|..|.|..++..-... =-.||+|+..++|.+|+..+ ...|.||.+...+-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 56788999999999999888774322221 24799999999999999997 499999998766543
No 183
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.09 E-value=0.0054 Score=60.36 Aligned_cols=70 Identities=20% Similarity=0.294 Sum_probs=55.9
Q ss_pred EEEeecCCcc-cHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEEEccc
Q 014397 166 IFVGNVPNDM-SADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADN 241 (425)
Q Consensus 166 l~V~nL~~~~-te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~~a~~ 241 (425)
|-+.-.+... |-++|..+|.+||+|..|.|-... --|.|+|.+..+|-+|.......|++|.|+|.|..+
T Consensus 375 l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 375 LALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhccccceecCceeEEEEecC
Confidence 3333344443 568899999999999999886552 258999999999988877778899999999999876
No 184
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=95.69 E-value=0.19 Score=46.92 Aligned_cols=159 Identities=14% Similarity=0.135 Sum_probs=100.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecC-------CCCCcccEEEEEecchHHHHHH----H---hc
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDK-------ATGKSKGYGFITFKHIDGAMLA----L---KE 131 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-------~~g~skG~aFV~F~~~e~A~~A----l---~~ 131 (425)
++-.+|.|.+.||..+++-.++...|.+|++|++|.++.+. ...+......+.|-+.+.+... | .+
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 44456779999999999999999999999999999999775 1234556789999998887533 2 23
Q ss_pred CCCCcCCceEEEEecccCCCC----CC-C-------------CCCCCcccceEEEeecCCcccHHH-HHHH---HhhcC-
Q 014397 132 PSKKIDGRVTVTNLAVAGNSG----NS-T-------------NNPVDVSLRKIFVGNVPNDMSADK-LLAH---FACYG- 188 (425)
Q Consensus 132 ~~~~~~gr~~~v~~~~~~~~~----~~-~-------------~~~~~~~~~~l~V~nL~~~~te~~-L~~~---F~~~G- 188 (425)
+.+.+....+.+.+..-.... +. + .......++.|.|.=- ..+++++ |.+. +..-+
T Consensus 91 fK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~~n 169 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNSNN 169 (309)
T ss_pred HHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccCCC
Confidence 335566666666554421110 00 0 1112334567777543 4443333 3332 22212
Q ss_pred ---CceeeeeeccCCC--CCcceEEEEEeCCHHHHHHHHhcC
Q 014397 189 ---EIEEGPLGFDKQT--GKPKGFALFVYKTAEGAQAALVDP 225 (425)
Q Consensus 189 ---~v~~v~i~~d~~~--g~~kG~afV~F~~~~~A~~A~~~~ 225 (425)
.|+.|.|+...+. .-++.||.++|-+-.-|...++.+
T Consensus 170 ~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYl 211 (309)
T PF10567_consen 170 KRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYL 211 (309)
T ss_pred ceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHH
Confidence 4667777754333 336789999999988877777664
No 185
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.67 E-value=0.0071 Score=58.67 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=60.0
Q ss_pred ceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC--CCccCCeEEEEEEccc
Q 014397 164 RKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP--IKTVDGKQLNCRLADN 241 (425)
Q Consensus 164 ~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~--~~~~~gr~i~v~~a~~ 241 (425)
.+||++||...++.++|+.+|...-.-..-.++. ..+|+||.+.+...|.+|++.+ ..++.|+.+.|...-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 5799999999999999999997651111112222 2689999999999999999997 3789999999988866
Q ss_pred CCCCC
Q 014397 242 KKAKP 246 (425)
Q Consensus 242 ~~~~~ 246 (425)
++.+.
T Consensus 76 kkqrs 80 (584)
T KOG2193|consen 76 KKQRS 80 (584)
T ss_pred HHHHh
Confidence 65443
No 186
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.55 E-value=0.07 Score=44.45 Aligned_cols=74 Identities=18% Similarity=0.266 Sum_probs=58.4
Q ss_pred CCCCCeEEEcCCCCCC-CHHH---HHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEE
Q 014397 67 DPTQRKLFIRGLGWDT-TTEG---LRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTV 142 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~-te~~---l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~ 142 (425)
++.-.||.|+=|...+ ..+| |...++.||+|.+|.++-.. .|.|.|++..+|-+|+..++....++.+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq-------savVvF~d~~SAC~Av~Af~s~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ-------SAVVVFKDITSACKAVSAFQSRAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc-------eEEEEehhhHHHHHHHHhhcCCCCCceEE
Confidence 5567788888777666 3333 44567899999999876433 69999999999999999999888888888
Q ss_pred EEecc
Q 014397 143 TNLAV 147 (425)
Q Consensus 143 v~~~~ 147 (425)
..|..
T Consensus 156 CsWqq 160 (166)
T PF15023_consen 156 CSWQQ 160 (166)
T ss_pred eeccc
Confidence 87764
No 187
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.48 E-value=0.016 Score=52.83 Aligned_cols=62 Identities=24% Similarity=0.379 Sum_probs=56.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC
Q 014397 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS 133 (425)
Q Consensus 71 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~ 133 (425)
..|+|.||+.-++.+.|.+.|+.||+|+...++.|. .++..+-.+|+|...-.|.+|+....
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhc
Confidence 569999999999999999999999999998888874 78889999999999999999998764
No 188
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.47 E-value=0.028 Score=56.46 Aligned_cols=70 Identities=16% Similarity=0.231 Sum_probs=56.8
Q ss_pred cceEEEeecCCcccHHHHHHHHh--hcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC---CCccCCeEEEEE
Q 014397 163 LRKIFVGNVPNDMSADKLLAHFA--CYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP---IKTVDGKQLNCR 237 (425)
Q Consensus 163 ~~~l~V~nL~~~~te~~L~~~F~--~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~---~~~~~gr~i~v~ 237 (425)
.+.|.|+.||..+-.|+|+.+|+ .|=.+.+|.+-.+. --||+|++..||++|.+.+ .++|.|++|..+
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 35578899999999999999995 46677788776552 3699999999999999886 478999988766
Q ss_pred Ec
Q 014397 238 LA 239 (425)
Q Consensus 238 ~a 239 (425)
+.
T Consensus 248 IK 249 (684)
T KOG2591|consen 248 IK 249 (684)
T ss_pred hh
Confidence 54
No 189
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.08 E-value=0.015 Score=53.07 Aligned_cols=70 Identities=17% Similarity=0.214 Sum_probs=55.9
Q ss_pred ceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCC--------CCcce----EEEEEeCCHHHHHHHHhcC-CCccC
Q 014397 164 RKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQT--------GKPKG----FALFVYKTAEGAQAALVDP-IKTVD 230 (425)
Q Consensus 164 ~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~--------g~~kG----~afV~F~~~~~A~~A~~~~-~~~~~ 230 (425)
-.||+++||..++-..|+++|++||+|-+|.|.....+ +..+. -+.|+|.+...|+++.+.+ +..|.
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 56999999999999999999999999999988765443 22222 2569999999999998886 46777
Q ss_pred CeE
Q 014397 231 GKQ 233 (425)
Q Consensus 231 gr~ 233 (425)
|++
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 653
No 190
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.04 E-value=0.19 Score=40.55 Aligned_cols=65 Identities=15% Similarity=0.115 Sum_probs=47.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCc
Q 014397 70 QRKLFIRGLGWDTTTEGLRSIFSAYG-ELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKI 136 (425)
Q Consensus 70 ~~~lfV~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~ 136 (425)
...+.+.-.|+.++.++|..+.+.+- .|..++|++|.. .++=.+.++|.+.++|.+..+..| +.|
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPF 79 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCcc
Confidence 44455566666667777777766654 477888888743 356689999999999999999888 444
No 191
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.95 E-value=0.068 Score=49.69 Aligned_cols=64 Identities=14% Similarity=0.272 Sum_probs=49.1
Q ss_pred HHHHHHHHhhcCCeeEEEEeecCCCCCc-ccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecc
Q 014397 84 TEGLRSIFSAYGELEEAVVILDKATGKS-KGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAV 147 (425)
Q Consensus 84 e~~l~~~F~~~G~i~~v~i~~~~~~g~s-kG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~ 147 (425)
++++.+..++||.|..|.|..++..-.. .--.||+|+..++|.+|+-.++ ..|.||.+...+..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 4467788899999999988776432211 1247999999999999999999 78888887776653
No 192
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.76 E-value=0.2 Score=41.78 Aligned_cols=77 Identities=18% Similarity=0.325 Sum_probs=57.4
Q ss_pred CCCcccceEEEeecCCcc----cHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeE
Q 014397 158 PVDVSLRKIFVGNVPNDM----SADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQ 233 (425)
Q Consensus 158 ~~~~~~~~l~V~nL~~~~----te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~ 233 (425)
..+....+|.|+=|..++ +-..|...++.||+|.+|.+. | +-.|.|.|.|..+|.+|+.+.....-|..
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s~~pgtm 153 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQSRAPGTM 153 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcCCCCCce
Confidence 344556778887665554 223455667899999999774 2 33699999999999999999777778888
Q ss_pred EEEEEccc
Q 014397 234 LNCRLADN 241 (425)
Q Consensus 234 i~v~~a~~ 241 (425)
+.+.|...
T Consensus 154 ~qCsWqqr 161 (166)
T PF15023_consen 154 FQCSWQQR 161 (166)
T ss_pred EEeecccc
Confidence 88888654
No 193
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.57 E-value=0.03 Score=56.80 Aligned_cols=75 Identities=16% Similarity=0.236 Sum_probs=57.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHh-hcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCc---CCce
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFS-AYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKI---DGRV 140 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~---~gr~ 140 (425)
....++.|+|.||-.-.|.-+|++++. .+|.|++.+| |+ -|-.|||.|.+.++|.+.+..++ ..| +.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--Dk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HH----hhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 455788899999999999999999998 5677777632 22 24479999999999999888887 333 3456
Q ss_pred EEEEec
Q 014397 141 TVTNLA 146 (425)
Q Consensus 141 ~~v~~~ 146 (425)
|.+.+.
T Consensus 514 L~adf~ 519 (718)
T KOG2416|consen 514 LIADFV 519 (718)
T ss_pred eEeeec
Confidence 666554
No 194
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.40 E-value=0.06 Score=54.65 Aligned_cols=77 Identities=18% Similarity=0.146 Sum_probs=59.8
Q ss_pred CCcccceEEEeecCCcccHHHHHHHHh-hcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CC-c--cCCeE
Q 014397 159 VDVSLRKIFVGNVPNDMSADKLLAHFA-CYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IK-T--VDGKQ 233 (425)
Q Consensus 159 ~~~~~~~l~V~nL~~~~te~~L~~~F~-~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~-~--~~gr~ 233 (425)
....++.|+|.||-.-.|.-+|++++. .++.|++. ..|+. |-.|||.|.+.++|.+.+..| +. + -|.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDkI----KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDKI----KSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHHHh----hcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 445567899999999999999999997 56677766 33433 567999999999999998886 32 2 36688
Q ss_pred EEEEEccc
Q 014397 234 LNCRLADN 241 (425)
Q Consensus 234 i~v~~a~~ 241 (425)
|.+.++..
T Consensus 514 L~adf~~~ 521 (718)
T KOG2416|consen 514 LIADFVRA 521 (718)
T ss_pred eEeeecch
Confidence 88888754
No 195
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=94.18 E-value=0.046 Score=42.10 Aligned_cols=70 Identities=17% Similarity=0.218 Sum_probs=46.7
Q ss_pred EEEEecchHHHHHHHhcCC--CCcCCceEEEEecccCCCC-CCCCCCCCcccceEEEeecCCcccHHHHHHHH
Q 014397 115 GFITFKHIDGAMLALKEPS--KKIDGRVTVTNLAVAGNSG-NSTNNPVDVSLRKIFVGNVPNDMSADKLLAHF 184 (425)
Q Consensus 115 aFV~F~~~e~A~~Al~~~~--~~~~gr~~~v~~~~~~~~~-~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F 184 (425)
|+|+|.+++-|++.++.-. -.+....+.|....-.... .+-......+.++|.|.+||...++++|++.+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 6899999999999998765 3445555555433221111 11122234566899999999999999998643
No 196
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.41 E-value=0.045 Score=54.11 Aligned_cols=75 Identities=19% Similarity=0.174 Sum_probs=62.1
Q ss_pred CCCCeEEEcCCCCCC-CHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEEec
Q 014397 68 PTQRKLFIRGLGWDT-TTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLA 146 (425)
Q Consensus 68 ~~~~~lfV~nLp~~~-te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~~~ 146 (425)
.+++.|-+.-+|+.+ |.++|...|.+||+|+.|.|-.... .|.|+|.+..+|-+|.......|++|.|.+.|.
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~~s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWH 443 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchhccccceecCceeEEEEe
Confidence 345667777777766 7788999999999999998755422 699999999999899888889999999999997
Q ss_pred cc
Q 014397 147 VA 148 (425)
Q Consensus 147 ~~ 148 (425)
..
T Consensus 444 np 445 (526)
T KOG2135|consen 444 NP 445 (526)
T ss_pred cC
Confidence 65
No 197
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=93.18 E-value=0.06 Score=55.47 Aligned_cols=114 Identities=16% Similarity=0.156 Sum_probs=77.4
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEE
Q 014397 64 ADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTV 142 (425)
Q Consensus 64 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~ 142 (425)
........+|||+||...+..+-++.++..||.|.+++.+. |+|++|..+.-+..|+..++ ..+++..+.
T Consensus 34 ~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~ 104 (668)
T KOG2253|consen 34 FQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLI 104 (668)
T ss_pred ccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhh
Confidence 34455677899999999999999999999999998887653 89999999999999998887 666676666
Q ss_pred EEecccCCCCCCC----------CCCCCcccceEEEeecCCcccHHHHHHHHhh
Q 014397 143 TNLAVAGNSGNST----------NNPVDVSLRKIFVGNVPNDMSADKLLAHFAC 186 (425)
Q Consensus 143 v~~~~~~~~~~~~----------~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~ 186 (425)
++.....-..... .-......+.++|.+++....+......|.-
T Consensus 105 ~~~d~q~~~n~~k~~~~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~i 158 (668)
T KOG2253|consen 105 ENVDEQTIENADKEKSIANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQI 158 (668)
T ss_pred ccchhhhhcCccccccchhhhhcccCCchhHHHHHhhccccchhHHHHHHHHhc
Confidence 5442110000000 0011111345677777776666555555543
No 198
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.14 E-value=0.45 Score=44.65 Aligned_cols=73 Identities=19% Similarity=0.227 Sum_probs=53.3
Q ss_pred ceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEE-EEEEcccC
Q 014397 164 RKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQL-NCRLADNK 242 (425)
Q Consensus 164 ~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i-~v~~a~~~ 242 (425)
.=|.|-+++... -.-|..+|++||+|.+..-..+ --+-+|.|.+.-+|++||.++.+.|++..+ -|+.+..+
T Consensus 198 ~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~n------gNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 198 TWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPSN------GNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred ceEEEeccCccc-hhHHHHHHHhhCeeeeeecCCC------CceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCCH
Confidence 345555665543 3467889999999987654422 348899999999999999999899988654 46665554
Q ss_pred C
Q 014397 243 K 243 (425)
Q Consensus 243 ~ 243 (425)
.
T Consensus 271 s 271 (350)
T KOG4285|consen 271 S 271 (350)
T ss_pred H
Confidence 3
No 199
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=93.12 E-value=0.34 Score=36.69 Aligned_cols=53 Identities=15% Similarity=0.235 Sum_probs=38.3
Q ss_pred eEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC
Q 014397 165 KIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP 225 (425)
Q Consensus 165 ~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~ 225 (425)
.||--.+|..+...||.++|+.||.|. |..+.|. .|||...+.+.|+.|+..+
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~ 62 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTL 62 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHH
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHh
Confidence 344444999999999999999999874 4455442 6999999999999887764
No 200
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.10 E-value=0.46 Score=46.17 Aligned_cols=58 Identities=21% Similarity=0.141 Sum_probs=48.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC
Q 014397 69 TQRKLFIRGLGWDTTTEGLRSIFSAYGE-LEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS 133 (425)
Q Consensus 69 ~~~~lfV~nLp~~~te~~l~~~F~~~G~-i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~ 133 (425)
-.+.|-|.++|.....+||...|+.|+. --+|+++-|. .||-.|.+...|..||..-+
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~kh 448 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLKH 448 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhccC
Confidence 5677999999999999999999999964 3456666665 79999999999999997644
No 201
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=92.58 E-value=1.1 Score=36.28 Aligned_cols=68 Identities=18% Similarity=0.092 Sum_probs=49.1
Q ss_pred ccceEEEeecCCcccHHHHHHHHhhcC-CceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCC
Q 014397 162 SLRKIFVGNVPNDMSADKLLAHFACYG-EIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDG 231 (425)
Q Consensus 162 ~~~~l~V~nL~~~~te~~L~~~F~~~G-~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~g 231 (425)
....+.+...|+.++.++|..+.+.+- .|..++|++|.. ..+=.++++|.+.++|..-.+.. ++.|+.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 345566667777788888887777764 567889988732 34667999999999999998873 455443
No 202
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.43 E-value=0.93 Score=44.92 Aligned_cols=69 Identities=14% Similarity=0.187 Sum_probs=56.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhc-CCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcC
Q 014397 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAY-GELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKID 137 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~l~~~F~~~-G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~ 137 (425)
+...+.|+|=-+|..+|..||..|...+ -.|.+++|++|.... +=.++|.|.+.++|....+.++ +.|.
T Consensus 71 ~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pn--rymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 71 ASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPN--RYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCc--eEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 3348889999999999999999998775 468899999975433 3378999999999999999988 5443
No 203
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.30 E-value=0.15 Score=45.06 Aligned_cols=66 Identities=17% Similarity=0.055 Sum_probs=40.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhh-cCCe---eEEEEeecCC-C-CCcccEEEEEecchHHHHHHHhcCC
Q 014397 68 PTQRKLFIRGLGWDTTTEGLRSIFSA-YGEL---EEAVVILDKA-T-GKSKGYGFITFKHIDGAMLALKEPS 133 (425)
Q Consensus 68 ~~~~~lfV~nLp~~~te~~l~~~F~~-~G~i---~~v~i~~~~~-~-g~skG~aFV~F~~~e~A~~Al~~~~ 133 (425)
....+|.|++||+.+||+++.+.++. ++.. ..+.-..... . -....-|||.|.+.+++...+..++
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~ 76 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFD 76 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcC
Confidence 34568999999999999999997766 5544 2222111111 1 1123469999999999999888876
No 204
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.99 E-value=0.58 Score=43.92 Aligned_cols=68 Identities=24% Similarity=0.276 Sum_probs=51.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceE
Q 014397 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVT 141 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~ 141 (425)
+.....|-|-++|...+ .-|..+|++||+|++...-. ++ -+-+|.|.+.-+|.+||......|++..+
T Consensus 194 d~~D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~---ng---NwMhirYssr~~A~KALskng~ii~g~vm 261 (350)
T KOG4285|consen 194 DAADTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPS---NG---NWMHIRYSSRTHAQKALSKNGTIIDGDVM 261 (350)
T ss_pred ccccceEEEeccCccch-hHHHHHHHhhCeeeeeecCC---CC---ceEEEEecchhHHHHhhhhcCeeeccceE
Confidence 33456688888887644 45788999999998765442 22 28999999999999999988777776543
No 205
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=91.33 E-value=0.25 Score=52.74 Aligned_cols=74 Identities=20% Similarity=0.271 Sum_probs=58.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCC--ceEEE
Q 014397 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDG--RVTVT 143 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~g--r~~~v 143 (425)
....+.|||+.|..++....|...|..||.|..|.+-+.. -||||.|++...|+.|++.+- ..|.+ +.+.|
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq------~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rv 525 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ------PYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRV 525 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC------cceeeecccCccchhhHHHHhcCcCCCCCccccc
Confidence 3456779999999999999999999999999887764432 299999999999999998876 44432 34555
Q ss_pred Eec
Q 014397 144 NLA 146 (425)
Q Consensus 144 ~~~ 146 (425)
.++
T Consensus 526 dla 528 (975)
T KOG0112|consen 526 DLA 528 (975)
T ss_pred ccc
Confidence 554
No 206
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=90.93 E-value=0.18 Score=43.64 Aligned_cols=66 Identities=17% Similarity=0.101 Sum_probs=43.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCC-CCCcccEEEEEecchHHHHHHHhcCCCCcC
Q 014397 68 PTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKA-TGKSKGYGFITFKHIDGAMLALKEPSKKID 137 (425)
Q Consensus 68 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~g~skG~aFV~F~~~e~A~~Al~~~~~~~~ 137 (425)
...+++|.. +.+...++|.++.+ +++..|.+-+... ....+|..||+|.+.+.|.++++.....+.
T Consensus 109 ~~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~e~~~~ 175 (205)
T KOG4213|consen 109 IKERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTHEEKGA 175 (205)
T ss_pred HHHhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhhhhhcc
Confidence 345677777 43444444444444 6787777654421 136899999999999999999887654433
No 207
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=90.37 E-value=0.09 Score=50.07 Aligned_cols=81 Identities=22% Similarity=0.321 Sum_probs=60.1
Q ss_pred ccceEEEeecCCcccHHHHH---HHHhhcCCceeeeeeccCC--CCC-cceEEEEEeCCHHHHHHHHhcC-CCccCCeEE
Q 014397 162 SLRKIFVGNVPNDMSADKLL---AHFACYGEIEEGPLGFDKQ--TGK-PKGFALFVYKTAEGAQAALVDP-IKTVDGKQL 234 (425)
Q Consensus 162 ~~~~l~V~nL~~~~te~~L~---~~F~~~G~v~~v~i~~d~~--~g~-~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i 234 (425)
..+.+||-.|+..+.++++. +.|.+||.|..|.+..+.. ... ...-++|+|+..++|..||... +..++++.|
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 33567888888877655543 5789999999999988762 111 1223899999999999999985 588888887
Q ss_pred EEEEcccC
Q 014397 235 NCRLADNK 242 (425)
Q Consensus 235 ~v~~a~~~ 242 (425)
+..+.+.+
T Consensus 156 ka~~gttk 163 (327)
T KOG2068|consen 156 KASLGTTK 163 (327)
T ss_pred HHhhCCCc
Confidence 77666554
No 208
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=88.61 E-value=1.3 Score=39.43 Aligned_cols=60 Identities=18% Similarity=0.101 Sum_probs=42.9
Q ss_pred cHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCC---CccCCeEEEEEEccc
Q 014397 176 SADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPI---KTVDGKQLNCRLADN 241 (425)
Q Consensus 176 te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~---~~~~gr~i~v~~a~~ 241 (425)
..+.|+++|..+..+....++.. -.-..|.|.+.++|.+|...+. ..+.+..|+|-++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 45789999999998888777754 2358899999999999999965 679999999988843
No 209
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=88.16 E-value=1.9 Score=38.31 Aligned_cols=61 Identities=13% Similarity=0.091 Sum_probs=43.2
Q ss_pred CHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC---CCcCCceEEEEecccC
Q 014397 83 TTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS---KKIDGRVTVTNLAVAG 149 (425)
Q Consensus 83 te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~---~~~~gr~~~v~~~~~~ 149 (425)
..+.|+++|..+..+.++..++.- +-..|.|.+.++|++|...++ ..+.+..+.+.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 457899999999999888777542 258999999999999999987 5678888888877443
No 210
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.10 E-value=3.1 Score=42.65 Aligned_cols=39 Identities=15% Similarity=0.466 Sum_probs=32.2
Q ss_pred CCCCCeEEEcCCCCCC-CHHHHHHHHhhc----CCeeEEEEeec
Q 014397 67 DPTQRKLFIRGLGWDT-TTEGLRSIFSAY----GELEEAVVILD 105 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~-te~~l~~~F~~~----G~i~~v~i~~~ 105 (425)
...+++|-|.||.|+. ...+|.-+|+.| |.|.+|.|...
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpS 214 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPS 214 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechh
Confidence 4457889999999875 788999999887 57999998765
No 211
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=87.86 E-value=0.42 Score=42.22 Aligned_cols=64 Identities=9% Similarity=0.036 Sum_probs=38.1
Q ss_pred ccceEEEeecCCcccHHHHHHHHhh-cCCc---eeeeeeccC-CCC-CcceEEEEEeCCHHHHHHHHhcC
Q 014397 162 SLRKIFVGNVPNDMSADKLLAHFAC-YGEI---EEGPLGFDK-QTG-KPKGFALFVYKTAEGAQAALVDP 225 (425)
Q Consensus 162 ~~~~l~V~nL~~~~te~~L~~~F~~-~G~v---~~v~i~~d~-~~g-~~kG~afV~F~~~~~A~~A~~~~ 225 (425)
...+|.|++||+.+|++++.+.++. ++.. ..+.-.... ... ..-.-|||.|.+.+++..-+...
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~ 75 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRF 75 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHC
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhc
Confidence 3468999999999999999986665 4433 223211111 111 12346999999999988777764
No 212
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=85.34 E-value=0.83 Score=47.39 Aligned_cols=70 Identities=17% Similarity=0.105 Sum_probs=59.5
Q ss_pred cccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEc
Q 014397 161 VSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLA 239 (425)
Q Consensus 161 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a 239 (425)
....++||+|+...+..+-++.+...||.|..+.... |+|.+|..+..+..|+..+ ...+++..+.+...
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 4457899999999999999999999999988776542 8999999999999999886 47888888776653
No 213
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=84.62 E-value=0.91 Score=48.36 Aligned_cols=73 Identities=23% Similarity=0.375 Sum_probs=58.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CC--cCCceEEEEec
Q 014397 70 QRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KK--IDGRVTVTNLA 146 (425)
Q Consensus 70 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~--~~gr~~~v~~~ 146 (425)
..+.++-|.+-..+...|..++++||.|.+++.+++-. .|.|+|.+.+.|..|+..++ ++ +.|-+..|.++
T Consensus 298 qp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 298 QPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred cchhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 44456667777788889999999999999999988854 79999999999999999887 33 45666666666
Q ss_pred cc
Q 014397 147 VA 148 (425)
Q Consensus 147 ~~ 148 (425)
..
T Consensus 372 k~ 373 (1007)
T KOG4574|consen 372 KT 373 (1007)
T ss_pred cc
Confidence 54
No 214
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=84.18 E-value=0.27 Score=47.88 Aligned_cols=66 Identities=18% Similarity=0.176 Sum_probs=54.6
Q ss_pred CCCCCeEEEcCCCCCCCHH--------HHHHHHhh--cCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcC
Q 014397 67 DPTQRKLFIRGLGWDTTTE--------GLRSIFSA--YGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEP 132 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~--------~l~~~F~~--~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~ 132 (425)
....+.+|+.++....+.+ ++...|.. ++++..+...++.....++|..|++|+..+.|++++...
T Consensus 171 ~~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn~~ 246 (438)
T COG5193 171 SQMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNNGF 246 (438)
T ss_pred hhHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhccc
Confidence 4456778998888776555 89999998 677888888888777889999999999999999998543
No 215
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=83.37 E-value=1.8 Score=36.78 Aligned_cols=110 Identities=11% Similarity=-0.022 Sum_probs=69.1
Q ss_pred CCCHHHHHHHHhh-cCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEEecccCCCCCCCCCCC
Q 014397 81 DTTTEGLRSIFSA-YGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPV 159 (425)
Q Consensus 81 ~~te~~l~~~F~~-~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~~~~~~~~~~~~~~~~ 159 (425)
..+-..|.+.+.. ++....+.+..- ..++..++|.+++++.++++.-.-.+.+..+.++.-.+..... ....
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~~~~--~~~~ 100 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDFNPS--EVKF 100 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEecccccccccchhhhhhccccccc--ccce
Confidence 4567777776655 233223333321 1348999999999999999877766777666655443221111 0011
Q ss_pred CcccceEEEeecCCc-ccHHHHHHHHhhcCCceeeeeec
Q 014397 160 DVSLRKIFVGNVPND-MSADKLLAHFACYGEIEEGPLGF 197 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~-~te~~L~~~F~~~G~v~~v~i~~ 197 (425)
....-=|.|.+||.. .+++-|+++.+.+|++.+++...
T Consensus 101 ~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 101 EHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred eccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 111223667799987 57788899999999998887643
No 216
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=81.88 E-value=23 Score=37.95 Aligned_cols=61 Identities=13% Similarity=0.098 Sum_probs=42.8
Q ss_pred CCcccHHHHHHHHhhcCCce-----eeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEccc
Q 014397 172 PNDMSADKLLAHFACYGEIE-----EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLADN 241 (425)
Q Consensus 172 ~~~~te~~L~~~F~~~G~v~-----~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a~~ 241 (425)
...++..+|..++..-+.|. .|+|..+ |.||+.. .+.|...++.+ +..+.+++|.|+.+..
T Consensus 496 ~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~--------~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (629)
T PRK11634 496 DDGVEVRHIVGAIANEGDISSRYIGNIKLFAS--------HSTIELP-KGMPGEVLQHFTRTRILNKPMNMQLLGD 562 (629)
T ss_pred ccCCCHHHHHHHHHhhcCCChhhCCcEEEeCC--------ceEEEcC-hhhHHHHHHHhccccccCCceEEEECCC
Confidence 34577888888776655443 5666543 7788875 44566777776 5889999999998753
No 217
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=81.64 E-value=4.8 Score=29.25 Aligned_cols=44 Identities=20% Similarity=0.281 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC
Q 014397 81 DTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS 133 (425)
Q Consensus 81 ~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~ 133 (425)
.++-++|+..|..|.- .+|+.|+ || =||.|.+.++|++|.+..+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~-tG-----fYIvF~~~~Ea~rC~~~~~ 54 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR-TG-----FYIVFNDSKEAERCFRAED 54 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC-CE-----EEEEECChHHHHHHHHhcC
Confidence 5688999999999953 2445554 33 5899999999999999877
No 218
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=80.23 E-value=1.2 Score=47.57 Aligned_cols=72 Identities=19% Similarity=0.158 Sum_probs=59.0
Q ss_pred EEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-C--CccCCeEEEEEEcccC
Q 014397 166 IFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-I--KTVDGKQLNCRLADNK 242 (425)
Q Consensus 166 l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~--~~~~gr~i~v~~a~~~ 242 (425)
.++.|.+-.++...|..+|++||.|.+++-+++- -.|.|+|.+.+.|..|++.+ + ..+.|-+.+|.+++.-
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 5556667778888899999999999999988874 37999999999999999886 3 4467788888888764
Q ss_pred C
Q 014397 243 K 243 (425)
Q Consensus 243 ~ 243 (425)
.
T Consensus 375 ~ 375 (1007)
T KOG4574|consen 375 P 375 (1007)
T ss_pred c
Confidence 3
No 219
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=78.67 E-value=7.5 Score=38.80 Aligned_cols=67 Identities=16% Similarity=0.191 Sum_probs=54.4
Q ss_pred cceEEEeecCCcccHHHHHHHHhhc-CCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCC
Q 014397 163 LRKIFVGNVPNDMSADKLLAHFACY-GEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDG 231 (425)
Q Consensus 163 ~~~l~V~nL~~~~te~~L~~~F~~~-G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~g 231 (425)
.+.|+|-.+|..+|-.||..|...+ -.|.+|+|++|..- .+=.++|+|.+.++|..-.+.. +..|+-
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 6889999999999999999999766 46889999986432 2335899999999999998884 466654
No 220
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=77.93 E-value=7.2 Score=28.88 Aligned_cols=58 Identities=16% Similarity=0.146 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHhhcCC-----eeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEec
Q 014397 80 WDTTTEGLRSIFSAYGE-----LEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLA 146 (425)
Q Consensus 80 ~~~te~~l~~~F~~~G~-----i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~ 146 (425)
..++..+|..++..... |-.|.|..+ |+||+-... .|+++++.++ ..+.++.+.++.+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 46788899999987654 446666544 899998765 6777887776 8889999888754
No 221
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=74.72 E-value=11 Score=27.88 Aligned_cols=58 Identities=16% Similarity=0.165 Sum_probs=31.8
Q ss_pred CcccHHHHHHHHhhcCCc-----eeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEc
Q 014397 173 NDMSADKLLAHFACYGEI-----EEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLA 239 (425)
Q Consensus 173 ~~~te~~L~~~F~~~G~v-----~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a 239 (425)
..++..+|..++.....| -+|+|..+ |+||+-.. +.|..+++.+ +..+.|++|.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 457788888888766444 45666544 78888855 4666777775 58999999999875
No 222
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=70.23 E-value=17 Score=26.38 Aligned_cols=53 Identities=9% Similarity=0.145 Sum_probs=37.7
Q ss_pred cccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEE
Q 014397 174 DMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLN 235 (425)
Q Consensus 174 ~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~ 235 (425)
.++-++|+..+.+|. ..+|..|+ .| -||.|.+.++|++|.... ...+-...|.
T Consensus 11 ~~~v~d~K~~Lr~y~---~~~I~~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR---WDRIRDDR-----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCC---cceEEecC-----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 567889999999994 34455553 34 379999999999999885 3555444443
No 223
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=68.47 E-value=9.7 Score=27.82 Aligned_cols=63 Identities=13% Similarity=0.190 Sum_probs=44.3
Q ss_pred HHHHHHHhhcC-CceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEEEcccC
Q 014397 178 DKLLAHFACYG-EIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNK 242 (425)
Q Consensus 178 ~~L~~~F~~~G-~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~~a~~~ 242 (425)
++|++.|...| +|..|.-+..+.+.++--.-||+.+...+...++. ...|.+..|+|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~~--Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIYK--IKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccceee--hHhhCCeEEEEecCCCC
Confidence 56788887776 57777777776677777788888877655333321 47788889998877554
No 224
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=68.38 E-value=6.2 Score=42.43 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=26.5
Q ss_pred cCCCCCCeEEEcCCCCCC-CHHHHHHHHhhcCC
Q 014397 65 DADPTQRKLFIRGLGWDT-TTEGLRSIFSAYGE 96 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~-te~~l~~~F~~~G~ 96 (425)
+....++||+|..||.++ ++++|.++|.+...
T Consensus 203 ~~~~ssRTvlis~LP~~~~~~e~L~~~~~kl~~ 235 (827)
T COG5594 203 QNNLSSRTVLISGLPSELRSDEELKELFDKLKV 235 (827)
T ss_pred ccCCCCceEEeecCChhhcCchhHHHHHhhcCe
Confidence 356688999999999888 67779999998753
No 225
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=67.80 E-value=6.5 Score=32.07 Aligned_cols=48 Identities=15% Similarity=0.238 Sum_probs=27.0
Q ss_pred EEEcCCCCC---------CCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchH
Q 014397 73 LFIRGLGWD---------TTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHID 123 (425)
Q Consensus 73 lfV~nLp~~---------~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e 123 (425)
+.|-|++.+ ++.++|++.|+.|..++ ++.+.++. -.+|++.|+|.+.-
T Consensus 11 gIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 11 GIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDW 67 (116)
T ss_dssp EEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSH
T ss_pred EEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCCh
Confidence 555666443 35678999999998874 66666642 57889999997643
No 226
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=65.95 E-value=45 Score=32.96 Aligned_cols=38 Identities=24% Similarity=0.562 Sum_probs=29.7
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHHhhc----CCeeEEEEeec
Q 014397 68 PTQRKLFIRGLGWD-TTTEGLRSIFSAY----GELEEAVVILD 105 (425)
Q Consensus 68 ~~~~~lfV~nLp~~-~te~~l~~~F~~~----G~i~~v~i~~~ 105 (425)
..++.|-|=||.|+ +...+|..+|+.| |+|..|.|...
T Consensus 144 ~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 144 NPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred CcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 35677899999986 4778899999887 57888887655
No 227
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=65.27 E-value=11 Score=35.58 Aligned_cols=81 Identities=17% Similarity=0.173 Sum_probs=63.1
Q ss_pred cccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccC-------CCCCcceEEEEEeCCHHHHHHHHh----c---CC
Q 014397 161 VSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDK-------QTGKPKGFALFVYKTAEGAQAALV----D---PI 226 (425)
Q Consensus 161 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~-------~~g~~kG~afV~F~~~~~A~~A~~----~---~~ 226 (425)
-.++.|.+.|+..+++-..+...|.+|+.|+.|.++.+. +.-+......+.|-+.+.+..-.. . .+
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999999999999999999775 123345678999999887764332 2 25
Q ss_pred CccCCeEEEEEEccc
Q 014397 227 KTVDGKQLNCRLADN 241 (425)
Q Consensus 227 ~~~~gr~i~v~~a~~ 241 (425)
..|+...|.+.++..
T Consensus 93 ~~L~S~~L~lsFV~l 107 (309)
T PF10567_consen 93 TKLKSESLTLSFVSL 107 (309)
T ss_pred HhcCCcceeEEEEEE
Confidence 678888999888764
No 228
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=63.48 E-value=13 Score=34.70 Aligned_cols=35 Identities=26% Similarity=0.454 Sum_probs=27.0
Q ss_pred cceEEEeecCCc------------ccHHHHHHHHhhcCCceeeeeec
Q 014397 163 LRKIFVGNVPND------------MSADKLLAHFACYGEIEEGPLGF 197 (425)
Q Consensus 163 ~~~l~V~nL~~~------------~te~~L~~~F~~~G~v~~v~i~~ 197 (425)
..+|++..||-. .+++.|+..|+.||+|..|.|+.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 356777777632 35788999999999999888764
No 229
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=63.12 E-value=9.8 Score=31.04 Aligned_cols=44 Identities=25% Similarity=0.404 Sum_probs=25.5
Q ss_pred cHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCC-HHHHHHHH
Q 014397 176 SADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKT-AEGAQAAL 222 (425)
Q Consensus 176 te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~-~~~A~~A~ 222 (425)
+.++|++.|+.|..++ |+.+.++. -.+|+++|+|.. -.--..|+
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHH
T ss_pred CHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHH
Confidence 4578999999998775 55555533 558999999975 33333443
No 230
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=60.04 E-value=25 Score=25.64 Aligned_cols=61 Identities=11% Similarity=0.084 Sum_probs=43.5
Q ss_pred HHHHHHHhhcC-CeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEeccc
Q 014397 85 EGLRSIFSAYG-ELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAVA 148 (425)
Q Consensus 85 ~~l~~~F~~~G-~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~~ 148 (425)
++|.+.|...| +|.++.-++.+.+....-.-||+++...+..+ .++ +.+++..+.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCC
Confidence 57888888887 57788888877667777788998887765333 334 667777777776543
No 231
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=55.95 E-value=19 Score=34.91 Aligned_cols=57 Identities=19% Similarity=0.085 Sum_probs=36.8
Q ss_pred EEEEecchHHHHHHHhcCCCCcCCceEEEEecccCCCCCCCCCCCCcccceEEEeecCCcccHHHHHHHHhh
Q 014397 115 GFITFKHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFAC 186 (425)
Q Consensus 115 aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~ 186 (425)
|||+|++.++|..|++.....-. +...+..+.+ .+-|.-.||..+..+..++.++..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~-~~~~v~~APe--------------P~DI~W~NL~~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP-NSWRVSPAPE--------------PDDIIWENLSISSKQRFLRRIIVN 57 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC-CCceEeeCCC--------------cccccccccCCChHHHHHHHHHHH
Confidence 79999999999999996543222 3334444432 134667788777666666666544
No 232
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.69 E-value=25 Score=34.68 Aligned_cols=61 Identities=20% Similarity=0.188 Sum_probs=47.8
Q ss_pred ccceEEEeecCCcccHHHHHHHHhhcCC-ceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCcc
Q 014397 162 SLRKIFVGNVPNDMSADKLLAHFACYGE-IEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTV 229 (425)
Q Consensus 162 ~~~~l~V~nL~~~~te~~L~~~F~~~G~-v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~ 229 (425)
-.+.|-|.++|.....+||...|+.|+. =.+|.++.|. .||-.|.+...|..||.....++
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~kh~~l 451 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLKHDWL 451 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhccCceE
Confidence 3467889999999999999999999964 2356666653 69999999999999987633333
No 233
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=55.35 E-value=62 Score=26.16 Aligned_cols=107 Identities=14% Similarity=0.203 Sum_probs=57.2
Q ss_pred CCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEEecccCCCCCCCCC
Q 014397 78 LGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNN 157 (425)
Q Consensus 78 Lp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~~~~~~~~~~~~~~ 157 (425)
||+-+ +.|-+.|+.-|+|.+|..+.. |. .++|..-+.-.-..+++. +++-....
T Consensus 11 lPPYT--nKLSDYfeSPGKI~svItvtq-------------yp-dndal~~~~G~lE~vDg~-i~IGs~q~--------- 64 (145)
T TIGR02542 11 LPPYT--NKLSDYFESPGKIQSVITVTQ-------------YP-DNDALLYVHGTLEQVDGN-IRIGSGQT--------- 64 (145)
T ss_pred cCCcc--chhhHHhcCCCceEEEEEEec-------------cC-CchhhheeeeehhhccCc-EEEccCCC---------
Confidence 55554 358899999999999877643 22 122222222222344444 33322211
Q ss_pred CCCcccceEEE---------eecCCcccHHHHHHHHhh---cCCceeeeeeccCCCCCcceEEEEEeCCH
Q 014397 158 PVDVSLRKIFV---------GNVPNDMSADKLLAHFAC---YGEIEEGPLGFDKQTGKPKGFALFVYKTA 215 (425)
Q Consensus 158 ~~~~~~~~l~V---------~nL~~~~te~~L~~~F~~---~G~v~~v~i~~d~~~g~~kG~afV~F~~~ 215 (425)
...|+| .--|+.+|..+|+++|++ |--|.+-.|.+|--.--+--.||.-|...
T Consensus 65 -----~~sV~i~gTPsgnnv~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 65 -----PASVRIQGTPSGNNVIFPPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred -----cccEEEecCCCCCceecCceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 012222 224678899999999964 44444444554422222233678777644
No 234
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=55.11 E-value=30 Score=25.26 Aligned_cols=61 Identities=8% Similarity=0.046 Sum_probs=42.8
Q ss_pred HHHHHHHhhcC-CeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEeccc
Q 014397 85 EGLRSIFSAYG-ELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAVA 148 (425)
Q Consensus 85 ~~l~~~F~~~G-~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~~ 148 (425)
++|.+.|.++| ++..+..+..+.+...--.-||+.....+-.. .++ +.++++.+.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 47888898888 58888888877666666678888876654433 333 677788877775543
No 235
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=54.74 E-value=18 Score=26.37 Aligned_cols=63 Identities=14% Similarity=0.187 Sum_probs=43.5
Q ss_pred HHHHHHHhhcC-CceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEEEcccC
Q 014397 178 DKLLAHFACYG-EIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNK 242 (425)
Q Consensus 178 ~~L~~~F~~~G-~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~~a~~~ 242 (425)
++|++.|++.| .|..|.-+..+.+..+--.-+|+.....+-...+ ..+.|.++.|.|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~Il--~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKEIL--NIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcceE--eehhhCCeeEEEecCccc
Confidence 46888888887 6778887777766667777888887654333311 146788899988876543
No 236
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=52.97 E-value=23 Score=31.07 Aligned_cols=73 Identities=15% Similarity=0.093 Sum_probs=50.4
Q ss_pred ceEEEeecCCcccH-----HHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCe-EEEE
Q 014397 164 RKIFVGNVPNDMSA-----DKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGK-QLNC 236 (425)
Q Consensus 164 ~~l~V~nL~~~~te-----~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr-~i~v 236 (425)
.++.+-+++..+-. ...+.+|.+|-+.....+++. .++.-|.|.+++.|..|..++ ...|+++ .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 44666666665422 334567777766665555543 456789999999999999886 5889888 7777
Q ss_pred EEcccC
Q 014397 237 RLADNK 242 (425)
Q Consensus 237 ~~a~~~ 242 (425)
-++.+.
T Consensus 85 yfaQ~~ 90 (193)
T KOG4019|consen 85 YFAQPG 90 (193)
T ss_pred EEccCC
Confidence 777543
No 237
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=52.06 E-value=20 Score=31.41 Aligned_cols=72 Identities=13% Similarity=0.048 Sum_probs=47.3
Q ss_pred CeEEEcCCCCCCC-----HHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCc-eEEE
Q 014397 71 RKLFIRGLGWDTT-----TEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGR-VTVT 143 (425)
Q Consensus 71 ~~lfV~nLp~~~t-----e~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr-~~~v 143 (425)
+++++.+|+..+- ......+|..|-+.....+++ +.+..-|.|.+++.|..|...++ ..|.+. .+..
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 4577777776652 223345666555544444443 34577889999999999998888 788877 5555
Q ss_pred Eeccc
Q 014397 144 NLAVA 148 (425)
Q Consensus 144 ~~~~~ 148 (425)
-++..
T Consensus 85 yfaQ~ 89 (193)
T KOG4019|consen 85 YFAQP 89 (193)
T ss_pred EEccC
Confidence 55544
No 238
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=49.84 E-value=14 Score=37.50 Aligned_cols=63 Identities=21% Similarity=0.355 Sum_probs=43.8
Q ss_pred CCCCCeEEEcCCCCCC-CHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEE----EEecchHHHHHHHh
Q 014397 67 DPTQRKLFIRGLGWDT-TTEGLRSIFSAYGELEEAVVILDKATGKSKGYGF----ITFKHIDGAMLALK 130 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~-te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aF----V~F~~~e~A~~Al~ 130 (425)
....-.||.+-.|-+. +-++|++.+++. .+.+..+...++|-...||+| +-.-+-|-.+.-|+
T Consensus 294 k~~~P~Vf~GlyPid~~dye~LrdAleKL-~LNDasl~~E~EtS~ALGfGfRcGFLGlLHmeiiqERLe 361 (603)
T COG0481 294 KEVKPMVFAGLYPVDSDDYEDLRDALEKL-QLNDASLTYEPETSQALGFGFRCGFLGLLHMEIIQERLE 361 (603)
T ss_pred CcCCceEEEeecccChhHHHHHHHHHHhc-ccccceeeeccccchhccCceeehhhhHHHHHHHHHHHH
Confidence 4456679999999777 456799999988 677777777777777666665 44444555444444
No 239
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=46.69 E-value=74 Score=29.99 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=33.4
Q ss_pred ceEEEeecCCcccHHHHHHHHhhcCCce-eeeeeccCCCCCcceEEEEEeCCH
Q 014397 164 RKIFVGNVPNDMSADKLLAHFACYGEIE-EGPLGFDKQTGKPKGFALFVYKTA 215 (425)
Q Consensus 164 ~~l~V~nL~~~~te~~L~~~F~~~G~v~-~v~i~~d~~~g~~kG~afV~F~~~ 215 (425)
+-|+|.||+.++.-.||+..+.+.+-+- +|.+- | +.+-||+.|-+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk-----g-~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK-----G-HFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeee-----c-CCcceeEecCCc
Confidence 3499999999999999999998765332 23221 1 266799999664
No 240
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=46.08 E-value=35 Score=32.10 Aligned_cols=49 Identities=14% Similarity=0.158 Sum_probs=35.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchH
Q 014397 70 QRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHID 123 (425)
Q Consensus 70 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e 123 (425)
..-|+|+||+.++.-.||+..+.+.+-+- ..|.. .-..+-||++|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~isw----kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISW----KGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCc-eeEee----ecCCcceeEecCCcc
Confidence 44599999999999999999998875432 22322 224667999998743
No 241
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=46.07 E-value=21 Score=31.19 Aligned_cols=68 Identities=18% Similarity=0.071 Sum_probs=42.5
Q ss_pred cceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCC-CCcceEEEEEeCCHHHHHHHHhcCCCccCCeEE
Q 014397 163 LRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQT-GKPKGFALFVYKTAEGAQAALVDPIKTVDGKQL 234 (425)
Q Consensus 163 ~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~-g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i 234 (425)
.+++|.. +.+..-++|.++.+ +.+..|..-..... -..+|-.||+|.+.+.|.++++..........|
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~e~~~~e~el 179 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTHEEKGAETEL 179 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhhhhhccchHH
Confidence 4556666 33344455555555 67777655443221 256899999999999999988775444333333
No 242
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=45.83 E-value=99 Score=21.36 Aligned_cols=56 Identities=11% Similarity=0.070 Sum_probs=41.1
Q ss_pred eEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCH----HHHHHHHhcCC
Q 014397 165 KIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTA----EGAQAALVDPI 226 (425)
Q Consensus 165 ~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~----~~A~~A~~~~~ 226 (425)
++.|.+|.=.--...|++.+...-.|.++.+-.. .+.+-|+|... ++..++|++.+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~------~~~v~v~~~~~~~~~~~i~~~i~~~G 60 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE------TKTVTVTYDPDKTSIEKIIEAIEKAG 60 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEESTTTSCHHHHHHHHHHTT
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC------CCEEEEEEecCCCCHHHHHHHHHHhC
Confidence 4667777777778889999999888888887655 35688888743 56666666543
No 243
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=44.49 E-value=29 Score=26.75 Aligned_cols=32 Identities=16% Similarity=0.193 Sum_probs=25.2
Q ss_pred EEEEeCCHHHHHHHHhcC--CCccCCeEEEEEEc
Q 014397 208 ALFVYKTAEGAQAALVDP--IKTVDGKQLNCRLA 239 (425)
Q Consensus 208 afV~F~~~~~A~~A~~~~--~~~~~gr~i~v~~a 239 (425)
|+|+|+++.-|++.++.- ...++...+.|...
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~ 34 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVS 34 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEE
Confidence 689999999999999885 35677777666544
No 244
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=43.67 E-value=52 Score=23.53 Aligned_cols=19 Identities=37% Similarity=0.555 Sum_probs=15.6
Q ss_pred HHHHHHHHhhcCCeeEEEE
Q 014397 84 TEGLRSIFSAYGELEEAVV 102 (425)
Q Consensus 84 e~~l~~~F~~~G~i~~v~i 102 (425)
.++|+++|+.+|+|.-+.+
T Consensus 8 ~~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHHhcCcEEEEEE
Confidence 3579999999999976655
No 245
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=41.65 E-value=1.1e+02 Score=23.45 Aligned_cols=56 Identities=5% Similarity=0.089 Sum_probs=41.3
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhc
Q 014397 73 LFIRGLGWDTTTEGLRSIFSA-YG-ELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131 (425)
Q Consensus 73 lfV~nLp~~~te~~l~~~F~~-~G-~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~ 131 (425)
-|+-.++..++..+|++.++. |+ .|.+|..+..+. ..-=|||.+...++|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHh
Confidence 455557789999999999988 44 577887776542 122599999999988877654
No 246
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=41.32 E-value=50 Score=23.62 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=15.6
Q ss_pred HHHHHHHHhhcCCceeeee
Q 014397 177 ADKLLAHFACYGEIEEGPL 195 (425)
Q Consensus 177 e~~L~~~F~~~G~v~~v~i 195 (425)
.++|+++|+..|+|.-+-|
T Consensus 8 ~~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHHhcCcEEEEEE
Confidence 3689999999999876554
No 247
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=41.30 E-value=1.1e+02 Score=27.21 Aligned_cols=74 Identities=18% Similarity=0.229 Sum_probs=51.6
Q ss_pred CeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEEecccCCCCCCCCCCCCcccceEEEeecCCc-
Q 014397 96 ELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPND- 174 (425)
Q Consensus 96 ~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~- 174 (425)
.+.-|.+++++ +.|.+.++|.+-|++..+.|.-..|.+.... +.....+++|||--+.-.
T Consensus 36 ~l~PVlF~rdK----------~I~qs~e~ai~~lE~e~KlWreteI~I~~g~---------p~VNE~TkkIYICPFTGKV 96 (238)
T PF10915_consen 36 NLQPVLFVRDK----------IIFQSAEDAIRILEEEGKLWRETEIKIQSGK---------PSVNEQTKKIYICPFTGKV 96 (238)
T ss_pred CCCceeeecch----------hhccCHHHHHHHHHHhcchheeeeEEEecCC---------cccccccceEEEcCCcCcc
Confidence 45667777776 4799999999999988877766666666543 344556677887544221
Q ss_pred -------ccHHHHHHHHhhcC
Q 014397 175 -------MSADKLLAHFACYG 188 (425)
Q Consensus 175 -------~te~~L~~~F~~~G 188 (425)
-..|.|.++.++|-
T Consensus 97 F~DNt~~nPQDAIYDWvSkCP 117 (238)
T PF10915_consen 97 FGDNTHPNPQDAIYDWVSKCP 117 (238)
T ss_pred ccCCCCCChHHHHHHHHhhCC
Confidence 23567899998884
No 248
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=39.46 E-value=1.3e+02 Score=22.52 Aligned_cols=56 Identities=5% Similarity=0.091 Sum_probs=40.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhc
Q 014397 73 LFIRGLGWDTTTEGLRSIFSA-YG-ELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131 (425)
Q Consensus 73 lfV~nLp~~~te~~l~~~F~~-~G-~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~ 131 (425)
-|+-.++.+++..+|++.++. |+ +|.+|..+.-+. ..==|||.+...++|...-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHh
Confidence 556668889999999999988 44 577777766542 112599999888888766543
No 249
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=38.07 E-value=96 Score=27.33 Aligned_cols=8 Identities=25% Similarity=0.601 Sum_probs=3.4
Q ss_pred cCCceeee
Q 014397 187 YGEIEEGP 194 (425)
Q Consensus 187 ~G~v~~v~ 194 (425)
||.|.++.
T Consensus 98 fG~i~d~~ 105 (215)
T KOG3262|consen 98 FGPINDVH 105 (215)
T ss_pred cccccccE
Confidence 44444433
No 250
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=37.69 E-value=89 Score=24.70 Aligned_cols=47 Identities=26% Similarity=0.344 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHhh-cCCeeEEEEeecCC----CCCcccEEEEEecchHHHHH
Q 014397 80 WDTTTEGLRSIFSA-YGELEEAVVILDKA----TGKSKGYGFITFKHIDGAML 127 (425)
Q Consensus 80 ~~~te~~l~~~F~~-~G~i~~v~i~~~~~----~g~skG~aFV~F~~~e~A~~ 127 (425)
.+.+..+|++.++. |+.-.+..++..-. .++++|||.| |.+.+.|++
T Consensus 29 ~tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 29 ATPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 36688888887765 55333444443322 3467777776 566665544
No 251
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=37.60 E-value=1.5e+02 Score=24.78 Aligned_cols=117 Identities=12% Similarity=0.072 Sum_probs=48.2
Q ss_pred eEEEcCCC----CCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEE-ecchHHHHHHHhcCCCCcCCceEEEEe-
Q 014397 72 KLFIRGLG----WDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFIT-FKHIDGAMLALKEPSKKIDGRVTVTNL- 145 (425)
Q Consensus 72 ~lfV~nLp----~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~-F~~~e~A~~Al~~~~~~~~gr~~~v~~- 145 (425)
.+|+++|. ..+.-.+|+++|+..| ..+|+.... | |-..++ =.+.++.+..|+..-....|..+.|-.
T Consensus 5 iaLLRGINVGG~nki~MaeLr~~l~~~G-f~~V~Tyi~--S----GNvvf~~~~~~~~l~~~ie~~l~~~fG~~v~v~vr 77 (137)
T PF08002_consen 5 IALLRGINVGGKNKIKMAELREALEDLG-FTNVRTYIQ--S----GNVVFESDRDPAELAAKIEKALEERFGFDVPVIVR 77 (137)
T ss_dssp EEEESS-SBTTBS---HHHHHHHHHHCT--EEEEEETT--T----TEEEEEESS-HHHHHHHHHHHHHHH-TT---EEEE
T ss_pred EEEEcceecCCCCcccHHHHHHHHHHcC-CCCceEEEe--e----CCEEEecCCChHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 46777773 4578999999999998 466665443 2 233333 122222333333222222222222221
Q ss_pred -cccCCCCCCCCCC---CCcccceEEEeecCCcccHHHHHHHHhhcCCceeeee
Q 014397 146 -AVAGNSGNSTNNP---VDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPL 195 (425)
Q Consensus 146 -~~~~~~~~~~~~~---~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i 195 (425)
...-...-...+- ...+.++++|-=|....+.+.+.++-..-...+.+.+
T Consensus 78 s~~el~~i~~~nPf~~~~~~~~~~~~v~fl~~~~~~~~~~~l~~~~~~~E~~~~ 131 (137)
T PF08002_consen 78 SAEELRAIIAANPFPWEAEADPKRLYVTFLSGPPDAEALEELAAYDTGPERFRV 131 (137)
T ss_dssp EHHHHHHHHTT--GGGGS----SEEEEEEE-TT--HHHHHHHHTS---SEEEEE
T ss_pred eHHHHHHHHHHCCCcccccCCcceEEEEEeCCCCCHHHHHHHhccCCCCcEEEE
Confidence 1110000000111 1235577888888888888877777655444455544
No 252
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.11 E-value=6.5 Score=39.01 Aligned_cols=75 Identities=4% Similarity=-0.178 Sum_probs=55.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEec
Q 014397 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLA 146 (425)
Q Consensus 71 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~ 146 (425)
.+.|+..||..++++++.-+|..|+.|..+.+.+.-..+..+-.+||+-.+. +|..||..+. +.+.+..+++.++
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~-~~~~~i~~~k~q~~~~~~~r~~~~ 79 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKA-NGPNYIQPQKRQTTFESQDRKAVS 79 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeecc-CcccccCHHHHhhhhhhhhhhhcC
Confidence 3467788999999999999999999999888776655667777889886654 4566776655 4555555555444
No 253
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=35.54 E-value=1.2e+02 Score=24.62 Aligned_cols=47 Identities=21% Similarity=0.420 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHhh-cCCeeEEEEee----cCCCCCcccEEEEEecchHHHHH
Q 014397 80 WDTTTEGLRSIFSA-YGELEEAVVIL----DKATGKSKGYGFITFKHIDGAML 127 (425)
Q Consensus 80 ~~~te~~l~~~F~~-~G~i~~v~i~~----~~~~g~skG~aFV~F~~~e~A~~ 127 (425)
..++.+||+|-+++ |-.-.++.++. .-..+++.|||.| |.+.|.|.+
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 46789999998877 33222333332 2345789999987 666666554
No 254
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=35.44 E-value=18 Score=35.73 Aligned_cols=62 Identities=13% Similarity=0.023 Sum_probs=50.9
Q ss_pred ccceEEEeecCCcccHH--------HHHHHHhh--cCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHh
Q 014397 162 SLRKIFVGNVPNDMSAD--------KLLAHFAC--YGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALV 223 (425)
Q Consensus 162 ~~~~l~V~nL~~~~te~--------~L~~~F~~--~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~ 223 (425)
..+.+|+.++....+.+ +|..+|.. ++.+..|+.-+|..+..++|..|++|...+.|++++.
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 34567888777765544 89999988 6778888888887678889999999999999999985
No 255
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=34.99 E-value=36 Score=31.20 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=28.2
Q ss_pred cccceEEEeecCCcccHHHHHHHHhhcCCceee
Q 014397 161 VSLRKIFVGNVPNDMSADKLLAHFACYGEIEEG 193 (425)
Q Consensus 161 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v 193 (425)
....+||+-|+|..+|++.|.++.+++|.|..+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 445789999999999999999999999866543
No 256
>PRK11901 hypothetical protein; Reviewed
Probab=34.93 E-value=72 Score=30.83 Aligned_cols=58 Identities=21% Similarity=0.205 Sum_probs=39.6
Q ss_pred ecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEE--EeCCHHHHHHHHhcCCCcc
Q 014397 170 NVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALF--VYKTAEGAQAALVDPIKTV 229 (425)
Q Consensus 170 nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV--~F~~~~~A~~A~~~~~~~~ 229 (425)
-|.-..+++.|+.|..++. +..+.|+....+|+. -|.+| .|.+.++|++|+..|...|
T Consensus 249 QL~Aas~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 249 QLSSASRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred EeecCCCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCHHH
Confidence 3333456788888888874 566777765555553 24333 6899999999999986544
No 257
>PF09702 Cas_Csa5: CRISPR-associated protein (Cas_Csa5); InterPro: IPR010157 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor family of Cas protein found in various species of Sulfolobus and Pyrococcus (all archaeal). It is found with two different CRISPR loci in Sulfolobus solfataricus.
Probab=34.37 E-value=90 Score=24.70 Aligned_cols=25 Identities=12% Similarity=0.193 Sum_probs=18.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhh
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSA 93 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~ 93 (425)
.+.+.+.++++.|| |.+|+.+|++.
T Consensus 60 ~ekeg~~i~~g~lP---t~~eVe~Fl~~ 84 (105)
T PF09702_consen 60 KEKEGNYIIVGYLP---TDEEVEDFLDD 84 (105)
T ss_pred ccCCCCEEecCCCC---ChHHHHHHHHH
Confidence 35566889999998 55677776654
No 258
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.62 E-value=8.3 Score=38.30 Aligned_cols=76 Identities=8% Similarity=-0.173 Sum_probs=57.5
Q ss_pred ceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCC-CccCCeEEEEEEcc
Q 014397 164 RKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPI-KTVDGKQLNCRLAD 240 (425)
Q Consensus 164 ~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~-~~~~gr~i~v~~a~ 240 (425)
.+.|+..|+..+++++|.-+|+.|+.|..+.+..-.+.+..+=.+||+-.+ ++|..||..+. ..+.+.+++|.++.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 456788899999999999999999999988877665555566677877654 45667777664 56777777777664
No 259
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=31.53 E-value=4.5e+02 Score=24.75 Aligned_cols=35 Identities=11% Similarity=0.179 Sum_probs=27.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEee
Q 014397 70 QRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVIL 104 (425)
Q Consensus 70 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~ 104 (425)
.....|+|||+.+|..=|..+++..-.+.+..+|.
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~ 129 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVLMV 129 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEEEe
Confidence 45688999999999999999998765554444443
No 260
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=30.94 E-value=39 Score=31.63 Aligned_cols=35 Identities=20% Similarity=0.438 Sum_probs=28.1
Q ss_pred CCCeEEEcCCCCCC------------CHHHHHHHHhhcCCeeEEEEe
Q 014397 69 TQRKLFIRGLGWDT------------TTEGLRSIFSAYGELEEAVVI 103 (425)
Q Consensus 69 ~~~~lfV~nLp~~~------------te~~l~~~F~~~G~i~~v~i~ 103 (425)
...||++..||-.+ +++-|+..|+.||+|..|.|.
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 34579999998433 677899999999999988774
No 261
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=30.87 E-value=5.1e+02 Score=25.24 Aligned_cols=114 Identities=13% Similarity=0.101 Sum_probs=59.0
Q ss_pred cCCCCCCCHHHHHHHH----hhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEEecccCCC
Q 014397 76 RGLGWDTTTEGLRSIF----SAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLAVAGNS 151 (425)
Q Consensus 76 ~nLp~~~te~~l~~~F----~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~~~~~~~~ 151 (425)
.|.+++-+-+.|+..| ++||.-.++++.+.-.. .+|=+-|.|...-. +.++.+...-.++...+
T Consensus 118 T~~~~sPsvD~~~~v~lP~l~~~G~~~~l~v~rRG~y--P~GgGeV~~~v~p~--~~l~~i~l~~~g~i~~i-------- 185 (326)
T cd00874 118 TDVPWAPPIDYLRNVTLPLLERMGIEAELEVLRRGFY--PRGGGEVVLTVEPS--KLLPPLLLEERGEIEKI-------- 185 (326)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhCCCcEEEEEEeCCcC--CCCCEEEEEEEecc--cCCCcceeecCCCeEEE--------
Confidence 3566777777777654 67887677777665332 33334444432211 01111110101111111
Q ss_pred CCCCCCCCCcccceEEEeecCCcccHHHHH---HHHhhcCCceeeeeeccCCCCCcceEEEEEeC
Q 014397 152 GNSTNNPVDVSLRKIFVGNVPNDMSADKLL---AHFACYGEIEEGPLGFDKQTGKPKGFALFVYK 213 (425)
Q Consensus 152 ~~~~~~~~~~~~~~l~V~nL~~~~te~~L~---~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~ 213 (425)
.-..++.+||..+.+.++. +.+++. .+.+|.|..+...+.+.|++.+-+.
T Consensus 186 -----------rg~~~~~~l~~~va~r~~~~a~~~L~~~-~~~dv~i~~~~~~~~s~G~~i~L~a 238 (326)
T cd00874 186 -----------RGISHAANLPPHVAERQAEAAAALLRKA-LGLQIEIEPEDQSALGPGSGIVLWA 238 (326)
T ss_pred -----------EEEEEEccCCHHHHHHHHHHHHHHHhhc-cCCCeEEEEEecCCCCCCEEEEEEE
Confidence 1245677888888776654 455552 2345566655555777787766543
No 262
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=30.55 E-value=1.5e+02 Score=26.27 Aligned_cols=8 Identities=25% Similarity=0.675 Sum_probs=3.8
Q ss_pred eEEEcCCC
Q 014397 72 KLFIRGLG 79 (425)
Q Consensus 72 ~lfV~nLp 79 (425)
.+.|++|-
T Consensus 7 V~LiGrLg 14 (182)
T PRK06958 7 VILVGNLG 14 (182)
T ss_pred EEEEEEec
Confidence 34455553
No 263
>PRK06545 prephenate dehydrogenase; Validated
Probab=30.13 E-value=3.7e+02 Score=26.39 Aligned_cols=63 Identities=14% Similarity=0.126 Sum_probs=44.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC
Q 014397 69 TQRKLFIRGLGWDTTTEGLRSIFSAYG-ELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS 133 (425)
Q Consensus 69 ~~~~lfV~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~ 133 (425)
....|||-=-+.-=.-..|..++...+ .|+++.|.+.+ ....|..-+.|.+.+++++|.+.+.
T Consensus 289 ~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~ 352 (359)
T PRK06545 289 SFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAR--EDIHGVLQISFKNEEDRERAKALLE 352 (359)
T ss_pred cceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeecc--CCcCceEEEEeCCHHHHHHHHHHHH
Confidence 445677763333334456666666666 48889988774 3456788899999999999987765
No 264
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=30.08 E-value=49 Score=30.32 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=29.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAV 101 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~ 101 (425)
......+||+-|||..+|++-|.++.+.++.+.++.
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 344567799999999999999999999998665543
No 265
>PRK11901 hypothetical protein; Reviewed
Probab=29.98 E-value=1.6e+02 Score=28.45 Aligned_cols=66 Identities=17% Similarity=0.192 Sum_probs=43.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEE--EecchHHHHHHHhcCCCCc
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFI--TFKHIDGAMLALKEPSKKI 136 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV--~F~~~e~A~~Al~~~~~~~ 136 (425)
.+....+|-|-.+ .+++.|.+|..++. +..+++......++. .|..| .|.+.++|+.|++.|...+
T Consensus 241 ~p~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 241 APASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred CCCCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCHHH
Confidence 3444555666554 46888888888875 456666665444432 24433 6999999999999887443
No 266
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=29.30 E-value=92 Score=23.59 Aligned_cols=25 Identities=16% Similarity=0.204 Sum_probs=21.5
Q ss_pred cccEEEEEecchHHHHHHHhcCCCC
Q 014397 111 SKGYGFITFKHIDGAMLALKEPSKK 135 (425)
Q Consensus 111 skG~aFV~F~~~e~A~~Al~~~~~~ 135 (425)
.+||-|||=.+++++..|++.+...
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTE
T ss_pred CceEEEEEeCCHHHHHHHHhcccce
Confidence 7999999999999999999877644
No 267
>PF14893 PNMA: PNMA
Probab=28.65 E-value=49 Score=32.29 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=21.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhh
Q 014397 69 TQRKLFIRGLGWDTTTEGLRSIFSA 93 (425)
Q Consensus 69 ~~~~lfV~nLp~~~te~~l~~~F~~ 93 (425)
..+.|.|.+||.++++++|++.+..
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHH
Confidence 4567999999999999999988754
No 268
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=28.06 E-value=54 Score=31.65 Aligned_cols=34 Identities=18% Similarity=0.169 Sum_probs=23.6
Q ss_pred EEEEeCCHHHHHHHHhcCCCccCCeEEEEEEcccC
Q 014397 208 ALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNK 242 (425)
Q Consensus 208 afV~F~~~~~A~~A~~~~~~~~~gr~i~v~~a~~~ 242 (425)
|||+|++.++|+.|++... ..+.+.+.++.|-..
T Consensus 1 aFVtF~~~~~a~~~~q~~~-~~~~~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLL-SKRPNSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHh-cCCCCCceEeeCCCc
Confidence 7999999999999988632 222355566666443
No 269
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=27.84 E-value=1.4e+02 Score=25.01 Aligned_cols=47 Identities=15% Similarity=0.407 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHhh-cC-CeeEEEEeecC----CCCCcccEEEEEecchHHHHH
Q 014397 80 WDTTTEGLRSIFSA-YG-ELEEAVVILDK----ATGKSKGYGFITFKHIDGAML 127 (425)
Q Consensus 80 ~~~te~~l~~~F~~-~G-~i~~v~i~~~~----~~g~skG~aFV~F~~~e~A~~ 127 (425)
...+..+|++.++. |. .-.++.++..- -.+++.|||.| |.+.+.|.+
T Consensus 34 ~TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk 86 (132)
T PTZ00071 34 GTVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKK 86 (132)
T ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 36688999988876 44 22333333321 23567777776 555555443
No 270
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=27.07 E-value=2.2e+02 Score=19.88 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=31.7
Q ss_pred cHHHHHHHHhhcC-CceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCC
Q 014397 176 SADKLLAHFACYG-EIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIK 227 (425)
Q Consensus 176 te~~L~~~F~~~G-~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~ 227 (425)
.-.+|-++|.+.+ .|..+.+....+ +...-|.+++.+.|.++|++.+.
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~----~~~~rl~~~~~~~~~~~L~~~G~ 62 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSE----FGILRLIVSDPDKAKEALKEAGF 62 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCC----CCEEEEEECCHHHHHHHHHHCCC
Confidence 4467778887775 466665543321 46666777888888888877543
No 271
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=25.61 E-value=51 Score=20.76 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=10.4
Q ss_pred CCCCHHHHHHHHhhcC
Q 014397 80 WDTTTEGLRSIFSAYG 95 (425)
Q Consensus 80 ~~~te~~l~~~F~~~G 95 (425)
.++++++|++.|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4789999999998753
No 272
>COG2004 RPS24A Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]
Probab=24.66 E-value=2.2e+02 Score=22.79 Aligned_cols=47 Identities=28% Similarity=0.385 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHhh-cCCeeEEEEeecC----CCCCcccEEEEEecchHHHHH
Q 014397 80 WDTTTEGLRSIFSA-YGELEEAVVILDK----ATGKSKGYGFITFKHIDGAML 127 (425)
Q Consensus 80 ~~~te~~l~~~F~~-~G~i~~v~i~~~~----~~g~skG~aFV~F~~~e~A~~ 127 (425)
.+.+..+|++.+.. ++.-.++.++..- -.++++|||.| |.|.+.|.+
T Consensus 30 ~TPSr~evrekla~~l~~d~e~VvV~~ikt~fG~~~s~g~akI-Y~s~e~~~~ 81 (107)
T COG2004 30 PTPSRKEVREKLAAMLGADKELVVVDYIKTEFGKGRSKGYAKI-YDSVERAKK 81 (107)
T ss_pred CCCCHHHHHHHHHHHHCCCcceEEEEehhhhcCCcceeEEEEE-ECCHHHHHh
Confidence 45688899988876 5544444444332 23578888877 566665543
No 273
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=24.62 E-value=2.9e+02 Score=29.69 Aligned_cols=58 Identities=22% Similarity=0.258 Sum_probs=37.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhh---cCCeeEEEEeecCCCCCcccEEE-EEecchHHHHHHHhc
Q 014397 70 QRKLFIRGLGWDTTTEGLRSIFSA---YGELEEAVVILDKATGKSKGYGF-ITFKHIDGAMLALKE 131 (425)
Q Consensus 70 ~~~lfV~nLp~~~te~~l~~~F~~---~G~i~~v~i~~~~~~g~skG~aF-V~F~~~e~A~~Al~~ 131 (425)
.++|.|..||+.++.+.|.+.... -+.|. +.-++|. |.+ ..-| |+++....++..+..
T Consensus 220 ~~~ivItEiP~~~~~~~li~~i~~~~~~~ki~-I~~i~D~-s~~--~v~i~i~l~~~~~~~~~~~~ 281 (635)
T PRK09631 220 EKTIVIREIPFGTTTESLIASIEKAARKGKIK-ISSINDY-TAE--NVEIEIKLPRGVYASEVIEA 281 (635)
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHcCCCc-cceeEeC-CCC--cEEEEEEECCCCCHHHHHHH
Confidence 368999999999999998876543 34554 5556664 333 3444 455655555555544
No 274
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.50 E-value=5.3e+02 Score=24.63 Aligned_cols=15 Identities=13% Similarity=0.386 Sum_probs=9.9
Q ss_pred cccHHHHHHHHhhcC
Q 014397 174 DMSADKLLAHFACYG 188 (425)
Q Consensus 174 ~~te~~L~~~F~~~G 188 (425)
.||..-+.++++.|+
T Consensus 140 PcTp~av~~ll~~~~ 154 (285)
T PRK10792 140 PCTPRGIMTLLERYG 154 (285)
T ss_pred CCCHHHHHHHHHHcC
Confidence 566666777776664
No 275
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=24.13 E-value=3.4e+02 Score=26.48 Aligned_cols=142 Identities=17% Similarity=0.048 Sum_probs=69.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecc
Q 014397 69 TQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAV 147 (425)
Q Consensus 69 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~ 147 (425)
+..++|++-+-.+---+.|++....-|.-....+..+-.|+. |+-+...+..+-...|...+ .+.+ .+. .
T Consensus 80 p~~~~f~GsvG~Dk~ge~l~~~~~~aGv~~~yq~~~d~~TGt---Cavli~~~nRSL~anLgAAn~f~~d--hl~----~ 150 (343)
T KOG2854|consen 80 PGATVFFGSVGKDKFGELLKSKARAAGVNVHYQVKEDGPTGT---CAVLITGDNRSLCANLGAANCFKVD--HLD----K 150 (343)
T ss_pred CCceEEEeeccCchHHHHHHHHHHhcCceEEEEeccCCCCce---EEEEEeCCCcchhhccchhhccCHH--Hhc----c
Confidence 348899999988877777777777776433333333333332 33333333322222222111 1111 000 0
Q ss_pred cCCCCCCCCCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeec----------cCCCCCcceEEEEEeCCHHH
Q 014397 148 AGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGF----------DKQTGKPKGFALFVYKTAEG 217 (425)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~----------d~~~g~~kG~afV~F~~~~~ 217 (425)
+. .-..-...+-+||..+-..+..+.|+.+-+.+-+..++.++. +..-.+.--|+.|.|.++++
T Consensus 151 ~~------~~~lveka~v~yv~Gffltv~p~ai~~v~qh~~e~~r~~~lnlsapfI~q~~~~~l~~v~~y~DiifgNe~E 224 (343)
T KOG2854|consen 151 EE------NWALVEKAKVFYVAGFFLTVSPDAIRKVAQHAAENNRVFTLNLSAPFISQFFKDALDKVLPYADIIFGNEDE 224 (343)
T ss_pred hh------hhhhhhheeEEEEEEEEEEeChHHHHHHHHHHHHhcchhheeccchhHHHHHHHHHHhhcCcceEEEcCHHH
Confidence 00 000112235677888877777766665544332222211110 00011223489999999999
Q ss_pred HHHHHhcC
Q 014397 218 AQAALVDP 225 (425)
Q Consensus 218 A~~A~~~~ 225 (425)
|.+-.+..
T Consensus 225 A~af~~~~ 232 (343)
T KOG2854|consen 225 AAAFARAH 232 (343)
T ss_pred HHHHHHhh
Confidence 88766554
No 276
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.09 E-value=1.5e+02 Score=28.33 Aligned_cols=83 Identities=13% Similarity=0.095 Sum_probs=45.8
Q ss_pred hhhhhcccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeec--CCCCCcccEEEEEecchHHHHHHHhcCCCC
Q 014397 58 ESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILD--KATGKSKGYGFITFKHIDGAMLALKEPSKK 135 (425)
Q Consensus 58 ~~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--~~~g~skG~aFV~F~~~e~A~~Al~~~~~~ 135 (425)
.......+++.-.-.|.---||..+++.+|.+..+..-.|+-+.-..- -..+. .+|+ =.++....+.|+..+..
T Consensus 80 ~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~~---~~~~-PcTp~ai~~ll~~~~i~ 155 (286)
T PRK14175 80 NELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPEKDVDGFHPINIGKLYIDE---QTFV-PCTPLGIMEILKHADID 155 (286)
T ss_pred HHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCCccchHhHhcCC---CCCC-CCcHHHHHHHHHHcCCC
Confidence 333333333333344444678899999988887766544443221100 00111 1233 24777777888877777
Q ss_pred cCCceEEEE
Q 014397 136 IDGRVTVTN 144 (425)
Q Consensus 136 ~~gr~~~v~ 144 (425)
+.++.+.|-
T Consensus 156 l~Gk~vvVI 164 (286)
T PRK14175 156 LEGKNAVVI 164 (286)
T ss_pred CCCCEEEEE
Confidence 888776664
No 277
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.96 E-value=1.3e+02 Score=31.17 Aligned_cols=63 Identities=13% Similarity=0.071 Sum_probs=48.1
Q ss_pred CCeEEEcCCCCCCC---HHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceE
Q 014397 70 QRKLFIRGLGWDTT---TEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVT 141 (425)
Q Consensus 70 ~~~lfV~nLp~~~t---e~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~ 141 (425)
..-=+|+||+.-.. ...|.++-++||+|-.+++=.. -.|..++.+.|++|+......+.+|..
T Consensus 32 ~~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 32 PPLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLVKQDLEFADRPD 97 (489)
T ss_pred CCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHHhCCccccCCCC
Confidence 34467888875443 3556666678999998877433 367888999999999998899999886
No 278
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=23.96 E-value=2.2e+02 Score=22.69 Aligned_cols=45 Identities=22% Similarity=0.279 Sum_probs=31.0
Q ss_pred HHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhc
Q 014397 177 ADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVD 224 (425)
Q Consensus 177 e~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~ 224 (425)
+.+|.++++++| |.+-.|..|..+. .=|+++++.|.++.-++|.+
T Consensus 26 WPE~~a~lk~ag-i~nYSIfLde~~n--~lFgy~E~~d~~a~m~~~a~ 70 (105)
T COG3254 26 WPELLALLKEAG-IRNYSIFLDEEEN--LLFGYWEYEDFEADMAKMAE 70 (105)
T ss_pred cHHHHHHHHHcC-CceeEEEecCCcc--cEEEEEEEcChHHHHHHHhC
Confidence 456788888886 4555555554332 45999999987777777765
No 279
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=23.84 E-value=46 Score=34.31 Aligned_cols=66 Identities=11% Similarity=0.025 Sum_probs=45.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcC
Q 014397 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEP 132 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~ 132 (425)
....++|||+|+++.++-++|..+.+.+--+..+-+.......+..-+.+|+|+---....|+..+
T Consensus 228 ~hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aL 293 (648)
T KOG2295|consen 228 THKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWAL 293 (648)
T ss_pred hhHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHh
Confidence 345678999999999999999999988866665555444334456667888887544444444333
No 280
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=23.84 E-value=54 Score=35.11 Aligned_cols=26 Identities=15% Similarity=0.195 Sum_probs=20.0
Q ss_pred CcccceEEEeecCCccc--HHHHHHHHh
Q 014397 160 DVSLRKIFVGNVPNDMS--ADKLLAHFA 185 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~~t--e~~L~~~F~ 185 (425)
....+.|.|.+|..-|| ++-|..+|.
T Consensus 506 ~~~~~VvLiDElD~Lvtr~QdVlYn~fd 533 (767)
T KOG1514|consen 506 KRSTTVVLIDELDILVTRSQDVLYNIFD 533 (767)
T ss_pred CCCCEEEEeccHHHHhcccHHHHHHHhc
Confidence 34456788999998888 777888884
No 281
>PF14893 PNMA: PNMA
Probab=23.70 E-value=65 Score=31.44 Aligned_cols=24 Identities=17% Similarity=0.347 Sum_probs=20.9
Q ss_pred cceEEEeecCCcccHHHHHHHHhh
Q 014397 163 LRKIFVGNVPNDMSADKLLAHFAC 186 (425)
Q Consensus 163 ~~~l~V~nL~~~~te~~L~~~F~~ 186 (425)
.+.|.|.+||.+|++++|++.++.
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHHH
Confidence 477999999999999999988754
No 282
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=23.59 E-value=2.3e+02 Score=22.11 Aligned_cols=57 Identities=16% Similarity=0.154 Sum_probs=34.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhhc--------CCeeEEEEeec-----CCCCCccc-EEEEEecchHHHHHHHhc
Q 014397 73 LFIRGLGWDTTTEGLRSIFSAY--------GELEEAVVILD-----KATGKSKG-YGFITFKHIDGAMLALKE 131 (425)
Q Consensus 73 lfV~nLp~~~te~~l~~~F~~~--------G~i~~v~i~~~-----~~~g~skG-~aFV~F~~~e~A~~Al~~ 131 (425)
+|| |.++++++++.++.+.+ |+|.++...-. +..+..+| |.++.|....++.+.|+.
T Consensus 11 ~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler 81 (97)
T CHL00123 11 MYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEK 81 (97)
T ss_pred EEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHH
Confidence 454 45677777776665443 35555442211 12345666 688999988887777764
No 283
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.42 E-value=5e+02 Score=22.61 Aligned_cols=56 Identities=21% Similarity=0.083 Sum_probs=42.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC
Q 014397 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS 133 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~ 133 (425)
+....++-| +|+..+.++-|.++-+-+|.|.+. .+. .-.+.|-+.+..++||+.+.
T Consensus 109 p~~~~~iRv-~l~~~i~~erl~ei~E~~gvI~Ef---ee~-------~~V~I~Gdke~Ik~aLKe~s 164 (169)
T PF09869_consen 109 PPGFETIRV-KLKKPIQEERLQEISEWHGVIFEF---EED-------DKVVIEGDKERIKKALKEFS 164 (169)
T ss_pred CCCceeEEE-ecCccchHHHHHHHHHHhceeEEe---cCC-------cEEEEeccHHHHHHHHHHHH
Confidence 334444555 489999999999999999988665 221 24778999999999999865
No 284
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=23.12 E-value=2.3e+02 Score=27.74 Aligned_cols=25 Identities=8% Similarity=0.016 Sum_probs=16.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHh
Q 014397 68 PTQRKLFIRGLGWDTTTEGLRSIFS 92 (425)
Q Consensus 68 ~~~~~lfV~nLp~~~te~~l~~~F~ 92 (425)
..+.+||++|+..++...-|.++..
T Consensus 92 q~S~Ii~lRnfNNwIKs~LI~~y~~ 116 (389)
T KOG1975|consen 92 QRSPIIFLRNFNNWIKSVLINLYTK 116 (389)
T ss_pred ccCceeehhhhhHHHHHHHHHHHhc
Confidence 3567899999987665554444443
No 285
>PHA01632 hypothetical protein
Probab=23.09 E-value=88 Score=21.69 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=17.1
Q ss_pred EEEcCCCCCCCHHHHHHHHhh
Q 014397 73 LFIRGLGWDTTTEGLRSIFSA 93 (425)
Q Consensus 73 lfV~nLp~~~te~~l~~~F~~ 93 (425)
|.|-.+|..-||++|+..+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 456789999999999987654
No 286
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=22.93 E-value=2.6e+02 Score=19.14 Aligned_cols=54 Identities=11% Similarity=0.168 Sum_probs=39.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecch----HHHHHHHhc
Q 014397 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHI----DGAMLALKE 131 (425)
Q Consensus 72 ~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~----e~A~~Al~~ 131 (425)
||.|.+|.-.--...|++.+...-.|.++.+-... ..+-|+|... ++..++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~------~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET------KTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC------CEEEEEEecCCCCHHHHHHHHHH
Confidence 46777887777788899999998888888775442 3678888754 455666654
No 287
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.88 E-value=1.1e+02 Score=29.17 Aligned_cols=82 Identities=15% Similarity=0.105 Sum_probs=44.8
Q ss_pred hhhhcccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCC-ccc-EEEEEecchHHHHHHHhcCCCCc
Q 014397 59 SVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGK-SKG-YGFITFKHIDGAMLALKEPSKKI 136 (425)
Q Consensus 59 ~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~-skG-~aFV~F~~~e~A~~Al~~~~~~~ 136 (425)
....+.+++.-.-.|.---||..++++.|.+.....-.|+-+. ..+.++ ..+ -+| .=.++..+.+.|+..+..+
T Consensus 82 ~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~KDVDGl~---~~n~g~l~~g~~~~-~PcTp~avi~ll~~y~i~l 157 (284)
T PRK14177 82 VIDKLNLDPNVDGILLQHPVPSQIDERAAFDRIALEKDVDGVT---TLSFGKLSMGVETY-LPCTPYGMVLLLKEYGIDV 157 (284)
T ss_pred HHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcccccccCC---hhhHHHHHcCCCCC-CCCCHHHHHHHHHHhCCCC
Confidence 3333333333333344467888999988887766554333221 111110 011 123 3457777778888777777
Q ss_pred CCceEEEE
Q 014397 137 DGRVTVTN 144 (425)
Q Consensus 137 ~gr~~~v~ 144 (425)
.|+.+.|-
T Consensus 158 ~Gk~vvVi 165 (284)
T PRK14177 158 TGKNAVVV 165 (284)
T ss_pred CCCEEEEE
Confidence 77766653
No 288
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.73 E-value=1.2e+02 Score=28.96 Aligned_cols=83 Identities=10% Similarity=-0.036 Sum_probs=46.8
Q ss_pred hhhhhcccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCC-ccc-EEEEEecchHHHHHHHhcCCCC
Q 014397 58 ESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGK-SKG-YGFITFKHIDGAMLALKEPSKK 135 (425)
Q Consensus 58 ~~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~-skG-~aFV~F~~~e~A~~Al~~~~~~ 135 (425)
+......+++.-.-.|.---||..++++.|.+.....-.|+-+.-. +.++ ..+ -+|+ =.++..+.+.|+..+..
T Consensus 81 ~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~KDVDGl~~~---n~g~l~~~~~~~~-PcTp~av~~ll~~~~i~ 156 (285)
T PRK10792 81 ALIDELNADPTIDGILVQLPLPAHIDNVKVLERIHPDKDVDGFHPY---NVGRLAQRIPLLR-PCTPRGIMTLLERYGID 156 (285)
T ss_pred HHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccccCccChh---hHhHHhCCCCCCC-CCCHHHHHHHHHHcCCC
Confidence 3344443333333444556788999999888887766544433210 0110 000 1233 34777888888887777
Q ss_pred cCCceEEEE
Q 014397 136 IDGRVTVTN 144 (425)
Q Consensus 136 ~~gr~~~v~ 144 (425)
+.|+.+.|-
T Consensus 157 l~Gk~vvVi 165 (285)
T PRK10792 157 TYGLNAVVV 165 (285)
T ss_pred CCCCEEEEE
Confidence 777766663
No 289
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.54 E-value=6.9e+02 Score=23.91 Aligned_cols=53 Identities=6% Similarity=-0.098 Sum_probs=27.3
Q ss_pred CCCeEEEcCCCCCCCHH-HHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCC
Q 014397 69 TQRKLFIRGLGWDTTTE-GLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSK 134 (425)
Q Consensus 69 ~~~~lfV~nLp~~~te~-~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~ 134 (425)
.-..|.|++-|.+..-. ...+.++++|--.++..+.. =.++++..+.|+.++.
T Consensus 40 ~Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~-------------~~~~~el~~~I~~LN~ 93 (287)
T PRK14176 40 GLATILVGDDPASKMYVRLKHKACERVGIRAEDQFLPA-------------DTTQEELLELIDSLNK 93 (287)
T ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcCCEEEEEECCC-------------CCCHHHHHHHHHHHhC
Confidence 34456777766554333 33456666764332222211 1246667777777663
No 290
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.51 E-value=1.6e+02 Score=28.23 Aligned_cols=83 Identities=16% Similarity=0.101 Sum_probs=46.9
Q ss_pred hhhhhcccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeec--CCCCCcccEEEEEecchHHHHHHHhcCCCC
Q 014397 58 ESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILD--KATGKSKGYGFITFKHIDGAMLALKEPSKK 135 (425)
Q Consensus 58 ~~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--~~~g~skG~aFV~F~~~e~A~~Al~~~~~~ 135 (425)
.....+.+++.-.-.|.---||..+++..|.+.....-.|+-+.-..- -..+. .+|+ =.++....+.|+..+..
T Consensus 86 ~~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~g~---~~~~-PcTp~av~~ll~~~~i~ 161 (287)
T PRK14176 86 ELIDSLNKRKDVHGILLQLPLPKHLDPQEAMEAIDPAKDADGFHPYNMGKLMIGD---EGLV-PCTPHGVIRALEEYGVD 161 (287)
T ss_pred HHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCccccccccChhhhhhHhcCC---CCCC-CCcHHHHHHHHHHcCCC
Confidence 334444333333334444678899999998887776644443221000 00111 1343 35788888888888777
Q ss_pred cCCceEEEE
Q 014397 136 IDGRVTVTN 144 (425)
Q Consensus 136 ~~gr~~~v~ 144 (425)
+.|+.+.|-
T Consensus 162 l~Gk~vvVi 170 (287)
T PRK14176 162 IEGKNAVIV 170 (287)
T ss_pred CCCCEEEEE
Confidence 777766653
No 291
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=22.49 E-value=2.2e+02 Score=20.64 Aligned_cols=20 Identities=40% Similarity=0.348 Sum_probs=16.4
Q ss_pred EEEEEecchHHHHHHHhcCC
Q 014397 114 YGFITFKHIDGAMLALKEPS 133 (425)
Q Consensus 114 ~aFV~F~~~e~A~~Al~~~~ 133 (425)
+.+|.|.+..+|.+|-+.+.
T Consensus 3 ~~~i~F~st~~a~~~ek~lk 22 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLK 22 (73)
T ss_pred eEEEEECCHHHHHHHHHHHH
Confidence 67899999999988877655
No 292
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=22.04 E-value=3.7e+02 Score=27.53 Aligned_cols=59 Identities=17% Similarity=0.286 Sum_probs=36.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhc---CCeeEEEEeecCCCCCcccEEEE-EecchHHHHHHHh
Q 014397 70 QRKLFIRGLGWDTTTEGLRSIFSAY---GELEEAVVILDKATGKSKGYGFI-TFKHIDGAMLALK 130 (425)
Q Consensus 70 ~~~lfV~nLp~~~te~~l~~~F~~~---G~i~~v~i~~~~~~g~skG~aFV-~F~~~e~A~~Al~ 130 (425)
.++|.|..||+.++.+++.+.+... +++..|.-++|. +.+ .+.-|| +++....++..++
T Consensus 225 ~~~i~ItElP~~~~~~~~~e~i~~l~~~~k~~~I~~~~D~-s~~-~~vrivI~lk~~~~~~~~~~ 287 (445)
T cd00187 225 RNTIEITELPYQVNKAKLKEKIAELVKDKKIEGISDVRDE-SDR-EGIRFVIELKRGAMAEVVLN 287 (445)
T ss_pred CceEEEEeCCCcccHHHHHHHHHHHHhcCCCcccceeeec-cCC-CceEEEEEECCCccHHHHHH
Confidence 4689999999999999988876542 333344444553 222 256665 4555544544443
No 293
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.82 E-value=1.5e+02 Score=28.26 Aligned_cols=84 Identities=17% Similarity=0.164 Sum_probs=47.5
Q ss_pred hhhhhhcccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCC-ccc-EEEEEecchHHHHHHHhcCCC
Q 014397 57 LESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGK-SKG-YGFITFKHIDGAMLALKEPSK 134 (425)
Q Consensus 57 ~~~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~-skG-~aFV~F~~~e~A~~Al~~~~~ 134 (425)
......+.+++.-.-.|.---||..++++.|.+.....-.|+-+.-. +.++ ..+ -+|+ =.++..+.+.|+..+.
T Consensus 78 ~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~KDVDGl~~~---n~g~l~~g~~~~~-PcTp~avi~lL~~~~i 153 (281)
T PRK14183 78 LETIAMMNNNPNIDGILVQLPLPKHIDTTKILEAIDPKKDVDGFHPY---NVGRLVTGLDGFV-PCTPLGVMELLEEYEI 153 (281)
T ss_pred HHHHHHHhCCCccCeEEEeCCCCCCCCHHHHHhccCchhcccccChh---hhhHHhcCCCCCC-CCcHHHHHHHHHHcCC
Confidence 33444444344334445556888999999988887766444433211 1111 000 1233 2467777777777777
Q ss_pred CcCCceEEEE
Q 014397 135 KIDGRVTVTN 144 (425)
Q Consensus 135 ~~~gr~~~v~ 144 (425)
.+.|+.+.|-
T Consensus 154 ~l~Gk~vvVi 163 (281)
T PRK14183 154 DVKGKDVCVV 163 (281)
T ss_pred CCCCCEEEEE
Confidence 7888776663
No 294
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.40 E-value=1.5e+02 Score=28.49 Aligned_cols=80 Identities=11% Similarity=0.119 Sum_probs=40.3
Q ss_pred hhhcccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCC-ccc-EEEEEecchHHHHHHHhcCCCCcC
Q 014397 60 VRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGK-SKG-YGFITFKHIDGAMLALKEPSKKID 137 (425)
Q Consensus 60 ~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~-skG-~aFV~F~~~e~A~~Al~~~~~~~~ 137 (425)
.....+++.-.-.|.---||..++++.|.+.....-.|+-+.-. +.++ ..+ -+|+ =.++..+.+.|+..+..+.
T Consensus 83 I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~---N~g~l~~~~~~~~-PcTp~aii~lL~~~~i~l~ 158 (301)
T PRK14194 83 IAELNADPSVNGILLQLPLPAHIDEARVLQAINPLKDVDGFHSE---NVGGLSQGRDVLT-PCTPSGCLRLLEDTCGDLT 158 (301)
T ss_pred HHHHcCCCCCCeEEEeCCCCCCCCHHHHHhccCchhccCccChh---hhhHHhcCCCCCC-CCcHHHHHHHHHHhCCCCC
Confidence 33333333333334445777888888877776554333322110 0010 000 1233 2456666777777666777
Q ss_pred CceEEE
Q 014397 138 GRVTVT 143 (425)
Q Consensus 138 gr~~~v 143 (425)
|+.+.+
T Consensus 159 Gk~V~v 164 (301)
T PRK14194 159 GKHAVV 164 (301)
T ss_pred CCEEEE
Confidence 776555
No 295
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=21.18 E-value=3.6e+02 Score=21.53 Aligned_cols=45 Identities=16% Similarity=0.378 Sum_probs=30.0
Q ss_pred HHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhc
Q 014397 84 TEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKE 131 (425)
Q Consensus 84 e~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~ 131 (425)
..+|.++++++| |.+-.|..|..+ +.=|+++++.+.++.-++|..
T Consensus 26 WPE~~a~lk~ag-i~nYSIfLde~~--n~lFgy~E~~d~~a~m~~~a~ 70 (105)
T COG3254 26 WPELLALLKEAG-IRNYSIFLDEEE--NLLFGYWEYEDFEADMAKMAE 70 (105)
T ss_pred cHHHHHHHHHcC-CceeEEEecCCc--ccEEEEEEEcChHHHHHHHhC
Confidence 346788889987 445555555333 344999999977766666654
No 296
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=21.03 E-value=3.3e+02 Score=19.67 Aligned_cols=57 Identities=12% Similarity=0.137 Sum_probs=40.2
Q ss_pred ceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCC----HHHHHHHHhcCC
Q 014397 164 RKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKT----AEGAQAALVDPI 226 (425)
Q Consensus 164 ~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~----~~~A~~A~~~~~ 226 (425)
.+|.|.++.=.--...+++.++...-|.++.+..+ ++.++|+|++ .++...||+..+
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~------~~~~~V~~d~~~~~~~~i~~ai~~aG 64 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLE------KGTATVTFDSNKVDIEAIIEAIEDAG 64 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcc------cCeEEEEEcCCcCCHHHHHHHHHHcC
Confidence 45677777666667788888888877888888766 3458999987 344555555543
No 297
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=20.99 E-value=3.8e+02 Score=20.34 Aligned_cols=47 Identities=15% Similarity=0.189 Sum_probs=24.2
Q ss_pred CCCCHHHHHHHHhh-cCC----eeEEEEeecCCCCCcccEEEEEecchHHHHH
Q 014397 80 WDTTTEGLRSIFSA-YGE----LEEAVVILDKATGKSKGYGFITFKHIDGAML 127 (425)
Q Consensus 80 ~~~te~~l~~~F~~-~G~----i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~ 127 (425)
.+.+..+|++.++. |+. |.-..+...--.+.+.|||.| |.+.+.+++
T Consensus 11 ~Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk 62 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKK 62 (84)
T ss_dssp SS--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHH
Confidence 45677888887765 332 111122222234567777776 566665543
No 298
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=20.95 E-value=2.6e+02 Score=27.94 Aligned_cols=40 Identities=18% Similarity=0.266 Sum_probs=31.1
Q ss_pred CCCcccceEEEeecCCc-ccHHHHHHHHhhc----CCceeeeeec
Q 014397 158 PVDVSLRKIFVGNVPND-MSADKLLAHFACY----GEIEEGPLGF 197 (425)
Q Consensus 158 ~~~~~~~~l~V~nL~~~-~te~~L~~~F~~~----G~v~~v~i~~ 197 (425)
+....++.|-|-||.|+ +...+|..+|+.| |.|..|.|..
T Consensus 141 e~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyp 185 (622)
T COG5638 141 EEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYP 185 (622)
T ss_pred CCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEech
Confidence 34556788999999996 6778899888876 6777777654
No 299
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=20.87 E-value=7.4e+02 Score=23.65 Aligned_cols=46 Identities=11% Similarity=0.204 Sum_probs=31.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC
Q 014397 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS 133 (425)
Q Consensus 72 ~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~ 133 (425)
.+.|.|||+.++...|.++++..-.+..+.+|. -.|-|++.+....
T Consensus 103 d~VvaNlPY~Istpil~~ll~~~~~~~~~vlm~----------------QkEvA~Rl~A~pg 148 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAHRPLFRCAVLMF----------------QKEFALRLLAQPG 148 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhcCCCCceeeeee----------------hHHHHHHHhcCCC
Confidence 478899999999999999986533333333322 3566777765554
No 300
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=20.81 E-value=4.8e+02 Score=21.55 Aligned_cols=61 Identities=15% Similarity=0.078 Sum_probs=42.7
Q ss_pred CCeEEEcCCCCC---CCHHHHHHHHhhcCC-eeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCC
Q 014397 70 QRKLFIRGLGWD---TTTEGLRSIFSAYGE-LEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDG 138 (425)
Q Consensus 70 ~~~lfV~nLp~~---~te~~l~~~F~~~G~-i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~g 138 (425)
...|.|+..... .+-.+|.+++++-|. ++++..-.+ ...|.|.+.|+..+|.+.+...+..
T Consensus 35 dpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~~--------~~~irf~~~~~Ql~Ak~vL~~~L~~ 99 (127)
T PRK10629 35 ESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEND--------SLLIRFDSPEQSAAAKEVLDRTLPH 99 (127)
T ss_pred CceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeCC--------EEEEEECCHHHHHHHHHHHHHHcCC
Confidence 345777766444 577788899988874 444433222 5899999999999998887766544
No 301
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.81 E-value=1.8e+02 Score=27.81 Aligned_cols=83 Identities=12% Similarity=0.035 Sum_probs=44.5
Q ss_pred hhhhhcccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCC-ccc-EEEEEecchHHHHHHHhcCCCC
Q 014397 58 ESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGK-SKG-YGFITFKHIDGAMLALKEPSKK 135 (425)
Q Consensus 58 ~~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~-skG-~aFV~F~~~e~A~~Al~~~~~~ 135 (425)
+......+++.-.-.|.---||.+++++.|.+.....-.|+-+. ..+.++ ..+ .+|+ =.++..+.+.|+..+..
T Consensus 80 ~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~~I~p~KDVDGl~---~~n~g~l~~~~~~~~-PcTp~aii~lL~~~~i~ 155 (285)
T PRK14189 80 ARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAPEKDVDGFH---VANAGALMTGQPLFR-PCTPYGVMKMLESIGIP 155 (285)
T ss_pred HHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhhcCcccCcccCC---hhhhhHhhCCCCCCc-CCCHHHHHHHHHHcCCC
Confidence 33333333333334455567888999988887776554443321 111110 000 1232 24677777777777777
Q ss_pred cCCceEEEE
Q 014397 136 IDGRVTVTN 144 (425)
Q Consensus 136 ~~gr~~~v~ 144 (425)
+.|+.+.|-
T Consensus 156 l~Gk~vvVi 164 (285)
T PRK14189 156 LRGAHAVVI 164 (285)
T ss_pred CCCCEEEEE
Confidence 777766653
No 302
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=20.76 E-value=1.4e+02 Score=23.00 Aligned_cols=52 Identities=15% Similarity=0.224 Sum_probs=33.2
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEEeecCC----CCC------cccEEEEEecchHH
Q 014397 73 LFIRGLGWDTTTEGLRSIFSA-YG-ELEEAVVILDKA----TGK------SKGYGFITFKHIDG 124 (425)
Q Consensus 73 lfV~nLp~~~te~~l~~~F~~-~G-~i~~v~i~~~~~----~g~------skG~aFV~F~~~e~ 124 (425)
.++-.++.++|..||++.++. |+ .|.+|..+.-+. .++ ..=-|+|++...+.
T Consensus 22 ~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR~g~~~g~~~~~KKaiVtL~~~~~ 85 (91)
T PF00276_consen 22 QYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKRKGKFVGKTKDYKKAIVTLKEGDK 85 (91)
T ss_dssp EEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEESSSCEEEE-EEEEEEEEESTTSC
T ss_pred EEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceEeCCccccCCCcEEEEEEeCCCCc
Confidence 455567889999999999987 55 366666654320 111 11257888876643
No 303
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.59 E-value=1.5e+02 Score=28.59 Aligned_cols=81 Identities=16% Similarity=0.154 Sum_probs=43.4
Q ss_pred hhhhcccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCC-ccc-EEEEEecchHHHHHHHhcCCCCc
Q 014397 59 SVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGK-SKG-YGFITFKHIDGAMLALKEPSKKI 136 (425)
Q Consensus 59 ~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~-skG-~aFV~F~~~e~A~~Al~~~~~~~ 136 (425)
......+++.-.-.|.---||..++++.|.+.....-.|+-+.-. +.++ ..+ -+|+ =.++..+.+.|+..+..+
T Consensus 81 ~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~KDVDGl~~~---n~g~l~~~~~~~~-PcTp~aii~lL~~~~i~l 156 (297)
T PRK14186 81 LIAQLNQDERVDGILLQLPLPKHLDEVPLLHAIDPDKDADGLHPL---NLGRLVKGEPGLR-SCTPAGVMRLLRSQQIDI 156 (297)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChh---hHHHHhCCCCCCC-CCCHHHHHHHHHHhCCCC
Confidence 333333333334445556788899998888777655444332210 0000 000 1233 256777777777777777
Q ss_pred CCceEEE
Q 014397 137 DGRVTVT 143 (425)
Q Consensus 137 ~gr~~~v 143 (425)
.|+.+.|
T Consensus 157 ~Gk~vvV 163 (297)
T PRK14186 157 AGKKAVV 163 (297)
T ss_pred CCCEEEE
Confidence 7776665
No 304
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=20.41 E-value=1.5e+02 Score=22.37 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=19.8
Q ss_pred cceEEEEEeCCHHHHHHHHhcC
Q 014397 204 PKGFALFVYKTAEGAQAALVDP 225 (425)
Q Consensus 204 ~kG~afV~F~~~~~A~~A~~~~ 225 (425)
.+||-|||=.+.++...|++.+
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi 64 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGI 64 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-
T ss_pred CceEEEEEeCCHHHHHHHHhcc
Confidence 5899999999999999999875
No 305
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.33 E-value=1.5e+02 Score=28.28 Aligned_cols=83 Identities=17% Similarity=0.140 Sum_probs=46.3
Q ss_pred hhhhhcccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCC-ccc-EEEEEecchHHHHHHHhcCCCC
Q 014397 58 ESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGK-SKG-YGFITFKHIDGAMLALKEPSKK 135 (425)
Q Consensus 58 ~~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~-skG-~aFV~F~~~e~A~~Al~~~~~~ 135 (425)
...+...+++.-.-.|.---||..++++.|.+..+..-.|+-+. ..+.++ ..+ -+|+ =.++..+.+.|+..+..
T Consensus 79 ~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~KDVDGl~---~~n~g~l~~g~~~~~-PcTp~avi~lL~~~~i~ 154 (285)
T PRK14191 79 SLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPNKDVDGFH---PLNIGKLCSQLDGFV-PATPMGVMRLLKHYHIE 154 (285)
T ss_pred HHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccC---hhhHHHHhcCCCCCC-CCcHHHHHHHHHHhCCC
Confidence 33444433333334455568889999999888776654443322 111110 000 1232 36677777777777777
Q ss_pred cCCceEEEE
Q 014397 136 IDGRVTVTN 144 (425)
Q Consensus 136 ~~gr~~~v~ 144 (425)
+.|+.+.|-
T Consensus 155 l~Gk~vvVv 163 (285)
T PRK14191 155 IKGKDVVII 163 (285)
T ss_pred CCCCEEEEE
Confidence 888776664
Done!