Query 014397
Match_columns 425
No_of_seqs 423 out of 2973
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 10:50:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014397.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014397hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 6.1E-36 2.1E-40 268.9 20.6 180 65-246 8-187 (196)
2 4f02_A Polyadenylate-binding p 100.0 1E-34 3.6E-39 265.1 16.3 169 68-244 13-183 (213)
3 2cjk_A Nuclear polyadenylated 100.0 1.9E-34 6.5E-39 252.4 14.5 165 69-242 2-166 (167)
4 3md3_A Nuclear and cytoplasmic 100.0 1.9E-33 6.7E-38 245.3 17.7 164 71-241 1-166 (166)
5 2qfj_A FBP-interacting repress 100.0 9.5E-34 3.3E-38 258.5 15.2 178 69-246 27-209 (216)
6 1b7f_A Protein (SXL-lethal pro 100.0 4.2E-33 1.4E-37 244.0 17.7 163 69-239 2-168 (168)
7 1fxl_A Paraneoplastic encephal 100.0 7.2E-33 2.5E-37 241.9 18.7 163 69-239 1-167 (167)
8 3nmr_A Cugbp ELAV-like family 100.0 4.2E-32 1.5E-36 239.0 18.6 164 69-240 2-175 (175)
9 3smz_A Protein raver-1, ribonu 100.0 8.5E-32 2.9E-36 256.4 17.8 204 20-244 60-266 (284)
10 2yh0_A Splicing factor U2AF 65 100.0 5.7E-32 1.9E-36 243.3 12.6 170 69-244 3-196 (198)
11 2ghp_A U4/U6 snRNA-associated 100.0 5E-31 1.7E-35 252.0 16.7 171 69-242 116-291 (292)
12 2g4b_A Splicing factor U2AF 65 100.0 1.1E-30 3.7E-35 229.6 17.2 158 69-240 3-172 (172)
13 1fje_B Nucleolin RBD12, protei 100.0 2.8E-31 9.6E-36 234.2 11.5 165 66-242 9-174 (175)
14 3tyt_A Heterogeneous nuclear r 100.0 2.9E-30 1E-34 233.8 17.7 164 69-239 3-204 (205)
15 3pgw_A U1-A; protein-RNA compl 100.0 2E-29 6.9E-34 239.7 20.7 167 66-240 5-281 (282)
16 2adc_A Polypyrimidine tract-bi 100.0 3E-29 1E-33 231.4 18.3 167 66-242 30-228 (229)
17 1qm9_A Polypyrimidine tract-bi 100.0 2.6E-29 8.8E-34 226.3 15.2 164 69-242 2-197 (198)
18 3smz_A Protein raver-1, ribonu 100.0 3.9E-29 1.3E-33 238.0 16.3 156 69-245 21-178 (284)
19 2ghp_A U4/U6 snRNA-associated 100.0 5.6E-29 1.9E-33 237.8 17.4 164 64-245 35-200 (292)
20 3sde_A Paraspeckle component 1 100.0 7.2E-29 2.5E-33 233.4 15.8 159 66-245 18-182 (261)
21 2kn4_A Immunoglobulin G-bindin 99.9 2.1E-23 7.1E-28 180.9 16.4 144 99-246 2-154 (158)
22 4f25_A Polyadenylate-binding p 99.9 1.1E-22 3.8E-27 166.8 9.3 109 69-179 4-113 (115)
23 2i2y_A Fusion protein consists 99.8 6E-21 2E-25 164.0 11.7 129 108-242 9-148 (150)
24 3pgw_S U1-70K; protein-RNA com 99.8 1.7E-20 5.8E-25 188.1 8.2 162 87-248 9-188 (437)
25 4fxv_A ELAV-like protein 1; RN 99.8 1E-19 3.4E-24 144.8 10.0 82 67-148 16-98 (99)
26 2lea_A Serine/arginine-rich sp 99.8 9.6E-20 3.3E-24 153.5 10.4 124 114-246 6-131 (135)
27 4fxv_A ELAV-like protein 1; RN 99.8 9.2E-20 3.1E-24 145.1 9.3 80 162-241 18-98 (99)
28 2lxi_A RNA-binding protein 10; 99.8 1.1E-19 3.8E-24 142.3 9.0 82 163-244 1-85 (91)
29 2cqd_A RNA-binding region cont 99.8 1.4E-18 4.8E-23 142.4 14.5 87 157-243 11-97 (116)
30 2lxi_A RNA-binding protein 10; 99.8 1.5E-19 5.3E-24 141.5 7.3 81 70-150 1-84 (91)
31 2lkz_A RNA-binding protein 5; 99.8 2E-19 6.8E-24 141.7 7.8 82 160-241 6-94 (95)
32 2dgs_A DAZ-associated protein 99.8 9.1E-19 3.1E-23 139.2 11.7 89 159-247 6-94 (99)
33 1whw_A Hypothetical protein ri 99.8 1.6E-18 5.6E-23 137.7 12.0 86 161-246 6-92 (99)
34 3s8s_A Histone-lysine N-methyl 99.8 5.7E-19 2E-23 143.2 9.5 82 162-243 5-87 (110)
35 1h2v_Z 20 kDa nuclear CAP bind 99.8 9.6E-19 3.3E-23 151.1 11.4 85 161-245 37-122 (156)
36 3s8s_A Histone-lysine N-methyl 99.8 7.5E-19 2.6E-23 142.5 10.0 82 67-148 3-85 (110)
37 2cpz_A CUG triplet repeat RNA- 99.8 1.7E-18 5.7E-23 141.7 11.9 90 158-247 20-110 (115)
38 1x5t_A Splicing factor 3B subu 99.8 1.8E-18 6.3E-23 136.6 11.5 85 162-246 4-90 (96)
39 2dnz_A Probable RNA-binding pr 99.8 1.5E-18 5E-23 136.9 10.5 84 162-245 4-88 (95)
40 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.3E-18 4.6E-23 139.0 10.2 88 160-247 9-97 (102)
41 1x4b_A Heterogeneous nuclear r 99.8 1.8E-18 6E-23 141.8 11.2 88 159-246 23-110 (116)
42 1wi8_A EIF-4B, eukaryotic tran 99.8 2.8E-18 9.7E-23 137.7 12.2 89 158-247 10-99 (104)
43 1x5u_A Splicing factor 3B subu 99.8 2.6E-18 8.9E-23 138.1 11.9 89 158-246 10-99 (105)
44 2hgn_A Heterogeneous nuclear r 99.8 1.9E-19 6.6E-24 151.8 5.5 125 112-244 1-125 (139)
45 1u6f_A Tcubp1, RNA-binding pro 99.8 2.9E-18 1E-22 145.1 12.8 89 158-246 37-126 (139)
46 1rk8_A CG8781-PA, CG8781-PA pr 99.8 8.5E-19 2.9E-23 153.0 9.7 130 117-246 11-156 (165)
47 1x5s_A Cold-inducible RNA-bind 99.8 1.5E-18 5.1E-23 138.8 10.2 87 160-246 9-96 (102)
48 2dnm_A SRP46 splicing factor; 99.8 1E-18 3.6E-23 139.9 9.1 89 158-246 8-97 (103)
49 3q2s_C Cleavage and polyadenyl 99.8 3.2E-19 1.1E-23 163.8 6.9 81 162-242 67-150 (229)
50 2dgo_A Cytotoxic granule-assoc 99.8 8E-18 2.7E-22 137.6 14.4 90 158-247 10-100 (115)
51 3s7r_A Heterogeneous nuclear r 99.8 1.9E-18 6.4E-23 133.9 10.0 81 159-239 7-87 (87)
52 2cph_A RNA binding motif prote 99.8 2.9E-18 1E-22 138.2 11.5 91 157-247 9-102 (107)
53 2dh8_A DAZ-associated protein 99.8 1.2E-18 4.1E-23 140.1 9.2 89 158-246 11-99 (105)
54 2cq0_A Eukaryotic translation 99.8 2.5E-18 8.5E-23 137.7 11.0 88 159-246 11-99 (103)
55 2dng_A Eukaryotic translation 99.8 4.7E-18 1.6E-22 136.1 12.6 88 158-246 10-97 (103)
56 2cqg_A TDP-43, TAR DNA-binding 99.8 5.2E-18 1.8E-22 135.8 12.8 88 158-246 10-97 (103)
57 2rs2_A Musashi-1, RNA-binding 99.8 2.2E-18 7.4E-23 139.7 10.5 88 159-246 21-108 (109)
58 1x4h_A RNA-binding protein 28; 99.8 3.9E-18 1.3E-22 138.5 11.8 89 158-246 10-105 (111)
59 2dgp_A Bruno-like 4, RNA bindi 99.8 2.8E-18 9.6E-23 138.1 10.8 90 158-247 8-101 (106)
60 2lkz_A RNA-binding protein 5; 99.8 6.9E-19 2.4E-23 138.6 6.8 82 67-148 6-94 (95)
61 3s7r_A Heterogeneous nuclear r 99.8 3.7E-18 1.3E-22 132.3 10.6 82 65-146 6-87 (87)
62 2cqd_A RNA-binding region cont 99.8 5.5E-18 1.9E-22 138.8 12.0 88 64-151 11-98 (116)
63 2hvz_A Splicing factor, argini 99.8 2.1E-18 7.2E-23 137.6 9.3 97 71-172 1-100 (101)
64 2cpe_A RNA-binding protein EWS 99.8 3.5E-18 1.2E-22 139.3 10.7 89 158-246 10-107 (113)
65 2d9p_A Polyadenylate-binding p 99.8 4E-18 1.4E-22 136.5 10.7 89 157-247 9-98 (103)
66 1whw_A Hypothetical protein ri 99.8 6.1E-18 2.1E-22 134.4 11.6 87 66-152 4-91 (99)
67 2kn4_A Immunoglobulin G-bindin 99.8 1.2E-18 4.1E-23 150.8 8.0 136 16-151 12-152 (158)
68 2cpf_A RNA binding motif prote 99.8 3.1E-18 1.1E-22 135.8 9.7 85 162-246 4-92 (98)
69 1p27_B RNA-binding protein 8A; 99.7 3.5E-18 1.2E-22 137.6 9.7 87 158-244 18-105 (106)
70 3lqv_A PRE-mRNA branch site pr 99.7 2.9E-18 1E-22 140.2 9.0 104 67-189 5-109 (115)
71 2rs2_A Musashi-1, RNA-binding 99.7 4.9E-18 1.7E-22 137.5 10.1 88 63-150 18-105 (109)
72 2dhg_A TRNA selenocysteine ass 99.7 6.1E-18 2.1E-22 135.6 10.4 87 159-246 5-94 (104)
73 2dgo_A Cytotoxic granule-assoc 99.7 1.3E-17 4.5E-22 136.2 12.5 88 65-152 10-98 (115)
74 2dnz_A Probable RNA-binding pr 99.7 9.6E-18 3.3E-22 132.1 11.3 84 68-151 3-87 (95)
75 1wg5_A Heterogeneous nuclear r 99.7 7.6E-18 2.6E-22 135.2 10.8 86 159-245 11-97 (104)
76 2do4_A Squamous cell carcinoma 99.7 8.4E-18 2.9E-22 133.9 10.9 86 158-244 12-98 (100)
77 1x5u_A Splicing factor 3B subu 99.7 9E-18 3.1E-22 134.9 11.1 87 65-151 10-97 (105)
78 2fy1_A RNA-binding motif prote 99.7 1.1E-17 3.9E-22 136.9 11.9 85 160-245 4-89 (116)
79 3p5t_L Cleavage and polyadenyl 99.7 1.3E-18 4.5E-23 135.9 6.0 82 164-245 2-86 (90)
80 2dgs_A DAZ-associated protein 99.7 1.4E-17 4.9E-22 132.3 12.1 86 66-151 6-91 (99)
81 3bs9_A Nucleolysin TIA-1 isofo 99.7 4.7E-18 1.6E-22 131.6 9.1 81 162-242 5-86 (87)
82 2cpz_A CUG triplet repeat RNA- 99.7 6.6E-18 2.3E-22 138.1 10.5 87 65-151 20-107 (115)
83 3md1_A Nuclear and cytoplasmic 99.7 6E-18 2.1E-22 129.8 9.5 80 164-243 2-82 (83)
84 3ex7_B RNA-binding protein 8A; 99.7 4.1E-18 1.4E-22 141.7 9.2 89 158-246 17-106 (126)
85 1wez_A HnRNP H', FTP-3, hetero 99.7 4.2E-18 1.4E-22 136.2 8.8 82 160-243 12-93 (102)
86 1x5s_A Cold-inducible RNA-bind 99.7 8E-18 2.7E-22 134.5 10.5 86 66-151 8-94 (102)
87 2dnm_A SRP46 splicing factor; 99.7 7.8E-18 2.7E-22 134.8 10.0 86 66-151 9-95 (103)
88 2dnh_A Bruno-like 5, RNA bindi 99.7 1.2E-17 4E-22 134.2 11.1 87 160-247 12-102 (105)
89 2cqc_A Arginine/serine-rich sp 99.7 9.9E-18 3.4E-22 132.0 10.3 85 157-241 9-94 (95)
90 3bs9_A Nucleolysin TIA-1 isofo 99.7 7E-18 2.4E-22 130.6 9.3 81 68-148 4-85 (87)
91 2cq0_A Eukaryotic translation 99.7 7.9E-18 2.7E-22 134.8 9.9 86 66-151 11-97 (103)
92 1s79_A Lupus LA protein; RRM, 99.7 6.1E-18 2.1E-22 135.4 9.0 82 159-241 7-88 (103)
93 2cq3_A RNA-binding protein 9; 99.7 2.1E-17 7.2E-22 132.3 12.2 89 157-247 9-98 (103)
94 2e5h_A Zinc finger CCHC-type a 99.7 9.2E-18 3.1E-22 132.0 9.8 82 159-240 12-94 (94)
95 2cpy_A RNA-binding protein 12; 99.7 8.4E-18 2.9E-22 137.3 9.9 84 159-243 11-95 (114)
96 3mdf_A Peptidyl-prolyl CIS-tra 99.7 6.7E-18 2.3E-22 130.1 8.8 80 161-240 5-85 (85)
97 1s79_A Lupus LA protein; RRM, 99.7 9.9E-18 3.4E-22 134.2 10.0 82 66-148 7-88 (103)
98 1x5t_A Splicing factor 3B subu 99.7 1E-17 3.6E-22 132.2 9.9 84 68-151 3-88 (96)
99 2cqi_A Nucleolysin TIAR; RNA r 99.7 2.5E-17 8.7E-22 131.8 12.2 87 158-246 10-97 (103)
100 1p27_B RNA-binding protein 8A; 99.7 1.4E-17 4.9E-22 134.0 10.7 86 65-150 18-104 (106)
101 3mdf_A Peptidyl-prolyl CIS-tra 99.7 9.2E-18 3.1E-22 129.3 9.1 80 67-146 4-84 (85)
102 1sjq_A Polypyrimidine tract-bi 99.7 5.6E-18 1.9E-22 135.0 8.0 81 161-247 14-97 (105)
103 1oo0_B CG8781-PA, drosophila Y 99.7 1.1E-17 3.9E-22 135.5 10.0 87 158-244 21-108 (110)
104 3ucg_A Polyadenylate-binding p 99.7 9.8E-18 3.3E-22 130.4 9.3 81 162-242 5-85 (89)
105 3p5t_L Cleavage and polyadenyl 99.7 3.4E-18 1.2E-22 133.4 6.7 80 71-150 2-84 (90)
106 2mss_A Protein (musashi1); RNA 99.7 7.3E-18 2.5E-22 126.7 8.2 75 165-239 1-75 (75)
107 2jwn_A Embryonic polyadenylate 99.7 3.7E-18 1.3E-22 141.5 7.2 84 161-244 34-117 (124)
108 2do4_A Squamous cell carcinoma 99.7 1.6E-17 5.6E-22 132.2 10.6 85 65-150 12-97 (100)
109 2do0_A HnRNP M, heterogeneous 99.7 3.4E-17 1.2E-21 133.5 12.8 86 159-245 11-97 (114)
110 2cph_A RNA binding motif prote 99.7 1.5E-17 5.2E-22 134.0 10.5 87 65-151 10-99 (107)
111 2hgl_A HNRPF protein, heteroge 99.7 6.5E-18 2.2E-22 141.9 8.5 121 113-242 2-125 (136)
112 2x1f_A MRNA 3'-END-processing 99.7 1.1E-17 3.9E-22 132.1 9.5 81 163-243 2-83 (96)
113 2dnh_A Bruno-like 5, RNA bindi 99.7 2.1E-17 7.2E-22 132.7 11.2 86 65-151 10-99 (105)
114 3ns6_A Eukaryotic translation 99.7 3.4E-18 1.1E-22 136.3 6.4 81 162-242 5-93 (100)
115 2cpf_A RNA binding motif prote 99.7 1.6E-17 5.6E-22 131.6 10.4 84 68-151 3-90 (98)
116 2cqb_A Peptidyl-prolyl CIS-tra 99.7 7.8E-18 2.7E-22 134.5 8.5 87 66-152 8-95 (102)
117 2dgp_A Bruno-like 4, RNA bindi 99.7 1.5E-17 5.1E-22 133.9 10.3 87 65-151 8-98 (106)
118 2e5h_A Zinc finger CCHC-type a 99.7 1.2E-17 4E-22 131.4 9.4 82 65-146 11-93 (94)
119 1x4a_A Splicing factor, argini 99.7 2.9E-17 9.8E-22 132.9 11.9 86 158-246 17-103 (109)
120 1x4h_A RNA-binding protein 28; 99.7 1.8E-17 6.2E-22 134.5 10.8 89 64-152 9-104 (111)
121 2kxn_B Transformer-2 protein h 99.7 7.6E-18 2.6E-22 140.6 8.7 87 158-244 41-128 (129)
122 2fy1_A RNA-binding motif prote 99.7 2.9E-17 9.8E-22 134.5 12.0 85 67-152 4-89 (116)
123 2div_A TRNA selenocysteine ass 99.7 1.9E-17 6.3E-22 131.6 10.5 84 66-149 5-94 (99)
124 3md1_A Nuclear and cytoplasmic 99.7 1.4E-17 5E-22 127.6 9.6 79 71-149 2-81 (83)
125 4f25_A Polyadenylate-binding p 99.7 8.9E-18 3.1E-22 137.4 8.8 82 163-246 5-87 (115)
126 2cqc_A Arginine/serine-rich sp 99.7 1.1E-17 3.7E-22 131.8 9.0 84 65-148 10-94 (95)
127 1oo0_B CG8781-PA, drosophila Y 99.7 1.3E-17 4.5E-22 135.2 9.5 87 64-150 20-107 (110)
128 2cq4_A RNA binding motif prote 99.7 3.9E-18 1.3E-22 139.2 6.3 86 160-245 22-107 (114)
129 2la6_A RNA-binding protein FUS 99.7 1.7E-17 5.9E-22 131.8 9.9 83 158-240 8-99 (99)
130 2cqg_A TDP-43, TAR DNA-binding 99.7 3.7E-17 1.3E-21 130.8 11.9 87 65-152 10-96 (103)
131 2jrs_A RNA-binding protein 39; 99.7 1.4E-17 4.7E-22 134.6 9.4 87 63-149 19-106 (108)
132 1uaw_A Mouse-musashi-1; RNP-ty 99.7 5.6E-18 1.9E-22 128.0 6.6 76 164-239 1-76 (77)
133 2div_A TRNA selenocysteine ass 99.7 1.8E-17 6E-22 131.7 9.7 83 161-243 7-95 (99)
134 2jrs_A RNA-binding protein 39; 99.7 1.6E-17 5.5E-22 134.2 9.6 87 157-243 20-107 (108)
135 2dis_A Unnamed protein product 99.7 4.5E-17 1.5E-21 131.7 12.3 85 161-245 6-95 (109)
136 1h2v_Z 20 kDa nuclear CAP bind 99.7 3E-17 1E-21 141.7 11.7 86 65-150 34-120 (156)
137 1iqt_A AUF1, heterogeneous nuc 99.7 6.9E-18 2.4E-22 126.8 6.7 75 165-239 1-75 (75)
138 2cqp_A RNA-binding protein 12; 99.7 2.2E-17 7.7E-22 130.8 10.0 83 160-242 12-95 (98)
139 2la6_A RNA-binding protein FUS 99.7 2.5E-17 8.4E-22 130.9 10.2 83 64-146 7-98 (99)
140 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.1E-17 3.8E-22 126.3 7.8 76 71-146 1-76 (77)
141 2x1f_A MRNA 3'-END-processing 99.7 1.9E-17 6.5E-22 130.8 9.4 81 70-150 2-83 (96)
142 2dnn_A RNA-binding protein 12; 99.7 1.6E-17 5.5E-22 134.1 9.1 83 159-243 12-94 (109)
143 1u6f_A Tcubp1, RNA-binding pro 99.7 3.2E-17 1.1E-21 138.6 11.3 88 65-152 37-125 (139)
144 1x4d_A Matrin 3; structural ge 99.7 1.8E-17 6.1E-22 132.0 9.1 80 160-245 12-95 (102)
145 3ns6_A Eukaryotic translation 99.7 6.1E-18 2.1E-22 134.8 6.4 80 69-148 5-92 (100)
146 2m2b_A RNA-binding protein 10; 99.7 1E-17 3.5E-22 140.3 8.1 88 157-245 17-111 (131)
147 2dh8_A DAZ-associated protein 99.7 1.3E-17 4.5E-22 134.0 8.4 87 65-151 11-97 (105)
148 2d9p_A Polyadenylate-binding p 99.7 3.1E-17 1.1E-21 131.3 10.5 86 65-152 10-96 (103)
149 1p1t_A Cleavage stimulation fa 99.7 1.1E-17 3.7E-22 134.1 7.8 87 159-245 4-91 (104)
150 2dhg_A TRNA selenocysteine ass 99.7 3.2E-17 1.1E-21 131.4 10.6 85 66-151 5-92 (104)
151 1wez_A HnRNP H', FTP-3, hetero 99.7 2.3E-17 7.8E-22 131.9 9.6 83 66-150 11-93 (102)
152 2khc_A Testis-specific RNP-typ 99.7 1.8E-17 6.2E-22 136.1 9.2 83 158-240 35-118 (118)
153 1sjq_A Polypyrimidine tract-bi 99.7 1.6E-17 5.6E-22 132.3 8.6 81 66-152 12-95 (105)
154 4a8x_A RNA-binding protein wit 99.7 1.4E-17 4.8E-22 129.1 8.0 83 162-244 3-87 (88)
155 2kxn_B Transformer-2 protein h 99.7 2E-17 6.8E-22 138.1 9.4 86 65-150 41-127 (129)
156 2cpi_A CCR4-NOT transcription 99.7 2.8E-17 9.7E-22 133.5 10.0 86 159-244 11-103 (111)
157 2dng_A Eukaryotic translation 99.7 4E-17 1.4E-21 130.7 10.7 84 66-151 11-95 (103)
158 3n9u_C Cleavage and polyadenyl 99.7 1.9E-17 6.7E-22 142.7 9.1 81 162-242 54-137 (156)
159 2dgx_A KIAA0430 protein; RRM d 99.7 3.9E-17 1.3E-21 129.0 10.1 82 161-245 7-93 (96)
160 2cq1_A PTB-like protein L; RRM 99.7 5.6E-17 1.9E-21 129.1 11.0 83 158-246 10-95 (101)
161 2ywk_A Putative RNA-binding pr 99.7 2.3E-17 7.9E-22 129.9 8.7 82 159-241 12-94 (95)
162 2cpe_A RNA-binding protein EWS 99.7 2.6E-17 9E-22 134.0 9.3 87 65-151 10-105 (113)
163 2dgw_A Probable RNA-binding pr 99.7 5.9E-17 2E-21 126.6 11.0 82 160-243 7-88 (91)
164 3q2s_C Cleavage and polyadenyl 99.7 2.7E-17 9.3E-22 150.9 10.4 80 69-148 67-149 (229)
165 3ex7_B RNA-binding protein 8A; 99.7 3.5E-17 1.2E-21 136.0 10.1 89 64-152 16-105 (126)
166 1wi8_A EIF-4B, eukaryotic tran 99.7 2.8E-17 9.6E-22 131.8 9.2 84 66-151 11-96 (104)
167 2ywk_A Putative RNA-binding pr 99.7 3.1E-17 1E-21 129.2 9.2 82 66-148 12-94 (95)
168 1wg5_A Heterogeneous nuclear r 99.7 6E-17 2E-21 129.9 11.0 84 66-150 11-95 (104)
169 3ucg_A Polyadenylate-binding p 99.7 4.8E-17 1.7E-21 126.4 10.2 78 70-148 6-84 (89)
170 2do0_A HnRNP M, heterogeneous 99.7 7.4E-17 2.5E-21 131.5 11.7 84 66-150 11-95 (114)
171 2cpx_A Hypothetical protein FL 99.7 2.5E-17 8.4E-22 134.6 8.8 88 160-247 22-110 (115)
172 2mss_A Protein (musashi1); RNA 99.7 2.6E-17 8.9E-22 123.7 8.2 75 72-146 1-75 (75)
173 2db1_A Heterogeneous nuclear r 99.7 2.8E-17 9.5E-22 135.0 9.0 83 160-243 14-99 (118)
174 2ek1_A RNA-binding protein 12; 99.7 1.6E-17 5.4E-22 130.9 7.2 80 162-241 14-94 (95)
175 2cqp_A RNA-binding protein 12; 99.7 1.8E-17 6.1E-22 131.4 7.5 84 66-149 11-95 (98)
176 2ad9_A Polypyrimidine tract-bi 99.7 4.1E-17 1.4E-21 133.3 9.7 83 159-247 27-112 (119)
177 2khc_A Testis-specific RNP-typ 99.7 2.4E-17 8.1E-22 135.4 8.4 81 66-146 36-117 (118)
178 3ulh_A THO complex subunit 4; 99.7 3.4E-17 1.2E-21 131.9 9.3 82 158-240 24-106 (107)
179 1p1t_A Cleavage stimulation fa 99.7 1.9E-17 6.4E-22 132.7 7.5 82 69-150 7-89 (104)
180 1x4c_A Splicing factor, argini 99.7 1.1E-16 3.6E-21 129.4 12.0 80 160-246 12-97 (108)
181 2cqi_A Nucleolysin TIAR; RNA r 99.7 7.7E-17 2.6E-21 129.0 11.0 85 65-151 10-95 (103)
182 2dis_A Unnamed protein product 99.7 1.1E-16 3.9E-21 129.3 12.1 85 67-151 5-94 (109)
183 2fc8_A NCL protein; structure 99.7 5.9E-17 2E-21 129.4 10.2 85 158-245 10-95 (102)
184 2cq3_A RNA-binding protein 9; 99.7 8.6E-17 2.9E-21 128.7 11.2 86 65-152 10-96 (103)
185 1rk8_A CG8781-PA, CG8781-PA pr 99.7 4.1E-17 1.4E-21 142.2 10.0 86 66-151 68-154 (165)
186 2fc9_A NCL protein; structure 99.7 8.5E-17 2.9E-21 128.2 11.0 84 158-245 10-94 (101)
187 2dgv_A HnRNP M, heterogeneous 99.7 4E-17 1.4E-21 127.7 8.9 84 160-245 5-89 (92)
188 3n9u_C Cleavage and polyadenyl 99.7 4.2E-17 1.4E-21 140.6 9.9 80 69-148 54-136 (156)
189 3ulh_A THO complex subunit 4; 99.7 5.5E-17 1.9E-21 130.7 9.9 82 65-147 24-106 (107)
190 2hgm_A HNRPF protein, heteroge 99.7 1.6E-17 5.3E-22 137.5 6.7 82 160-243 39-122 (126)
191 2wbr_A GW182, gawky, LD47780P; 99.7 4.3E-17 1.5E-21 124.2 8.6 72 69-146 6-78 (89)
192 1iqt_A AUF1, heterogeneous nuc 99.7 2.3E-17 7.7E-22 124.0 7.0 75 72-146 1-75 (75)
193 1wel_A RNA-binding protein 12; 99.7 2.5E-17 8.4E-22 136.6 7.7 84 159-242 21-104 (124)
194 2dgw_A Probable RNA-binding pr 99.7 9.4E-17 3.2E-21 125.4 10.5 81 66-149 6-87 (91)
195 2dha_A FLJ20171 protein; RRM d 99.7 2.2E-17 7.5E-22 136.2 7.0 80 162-242 22-105 (123)
196 2cpy_A RNA-binding protein 12; 99.7 2.6E-17 8.8E-22 134.4 7.4 82 66-148 11-93 (114)
197 1x4b_A Heterogeneous nuclear r 99.7 7.2E-17 2.5E-21 132.1 10.0 83 69-151 26-108 (116)
198 2m2b_A RNA-binding protein 10; 99.7 2.3E-17 7.8E-22 138.2 7.1 86 65-151 18-110 (131)
199 2ek1_A RNA-binding protein 12; 99.7 1.5E-17 5.3E-22 130.9 5.7 81 67-147 12-93 (95)
200 3r27_A HnRNP L, heterogeneous 99.7 5.2E-17 1.8E-21 128.1 8.6 79 159-243 17-98 (100)
201 1wex_A Hypothetical protein (r 99.7 1.6E-16 5.6E-21 127.2 11.6 82 159-246 11-95 (104)
202 2kt5_A RNA and export factor-b 99.7 1.3E-16 4.3E-21 132.3 11.3 86 159-245 31-117 (124)
203 4a8x_A RNA-binding protein wit 99.7 5.8E-17 2E-21 125.6 8.5 81 69-149 3-85 (88)
204 1x4e_A RNA binding motif, sing 99.7 1.4E-17 4.8E-22 128.4 4.8 79 68-146 3-82 (85)
205 2dgv_A HnRNP M, heterogeneous 99.7 1.1E-16 3.8E-21 125.2 10.1 82 67-150 5-87 (92)
206 2dgu_A Heterogeneous nuclear r 99.7 2.2E-16 7.4E-21 126.4 11.9 80 160-247 8-88 (103)
207 1fj7_A Nucleolin RBD1, protein 99.7 2.2E-17 7.6E-22 131.6 6.0 85 160-245 14-98 (101)
208 2ki2_A SS-DNA binding protein 99.7 2.3E-17 7.8E-22 128.6 5.8 81 164-245 2-83 (90)
209 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2.8E-17 9.6E-22 130.9 6.4 85 158-243 14-99 (100)
210 2lcw_A RNA-binding protein FUS 99.5 2.3E-18 8E-23 141.0 0.0 87 160-246 4-99 (116)
211 2lea_A Serine/arginine-rich sp 99.7 6.6E-17 2.3E-21 136.0 8.7 86 66-151 43-129 (135)
212 2lmi_A GRSF-1, G-rich sequence 99.7 3.9E-17 1.3E-21 131.8 6.9 84 159-243 7-93 (107)
213 2cq4_A RNA binding motif prote 99.7 2E-17 7E-22 134.9 5.2 81 68-149 23-104 (114)
214 2dnq_A RNA-binding protein 4B; 99.7 1.4E-16 4.7E-21 124.2 9.7 79 160-246 5-84 (90)
215 2hgl_A HNRPF protein, heteroge 99.7 7.8E-17 2.7E-21 135.3 8.7 82 65-148 39-124 (136)
216 2hgm_A HNRPF protein, heteroge 99.7 7.2E-17 2.5E-21 133.5 8.2 81 66-148 38-120 (126)
217 1x4e_A RNA binding motif, sing 99.7 1.5E-17 5.2E-22 128.2 3.9 78 162-239 4-82 (85)
218 1x4f_A Matrin 3; structural ge 99.7 9.9E-17 3.4E-21 129.6 8.7 82 160-247 22-107 (112)
219 3md3_A Nuclear and cytoplasmic 99.7 6.3E-17 2.2E-21 140.2 8.0 122 19-147 43-165 (166)
220 3r27_A HnRNP L, heterogeneous 99.7 1.9E-16 6.6E-21 124.9 9.9 78 66-149 17-97 (100)
221 2ad9_A Polypyrimidine tract-bi 99.7 1.6E-16 5.5E-21 129.8 9.8 81 66-152 27-110 (119)
222 2xs2_A Deleted in azoospermia- 99.7 6.5E-17 2.2E-21 129.2 7.3 84 159-244 5-88 (102)
223 1wel_A RNA-binding protein 12; 99.7 4.6E-17 1.6E-21 134.9 6.6 82 66-148 21-103 (124)
224 1x4a_A Splicing factor, argini 99.7 2.1E-16 7.3E-21 127.7 10.4 84 65-151 17-101 (109)
225 2dgx_A KIAA0430 protein; RRM d 99.7 1.6E-16 5.3E-21 125.6 9.3 81 67-150 6-91 (96)
226 2jwn_A Embryonic polyadenylate 99.7 2.3E-16 7.9E-21 130.6 10.6 80 70-150 36-116 (124)
227 2kt5_A RNA and export factor-b 99.7 2.6E-16 9.1E-21 130.3 10.9 85 66-151 31-116 (124)
228 2ki2_A SS-DNA binding protein 99.7 4.3E-17 1.5E-21 127.0 5.8 79 71-150 2-81 (90)
229 2qfj_A FBP-interacting repress 99.7 6E-17 2E-21 146.9 7.6 134 18-151 71-207 (216)
230 2j76_E EIF-4B, EIF4B, eukaryot 99.7 5.3E-17 1.8E-21 129.3 6.3 83 65-149 14-98 (100)
231 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.3E-16 7.9E-21 133.3 10.4 82 158-239 58-140 (140)
232 2i2y_A Fusion protein consists 99.7 2.3E-17 8E-22 141.4 4.2 130 15-149 11-148 (150)
233 2jvr_A Nucleolar protein 3; RN 99.7 1.7E-16 5.8E-21 128.5 9.0 78 162-243 27-106 (111)
234 1wex_A Hypothetical protein (r 99.7 3.7E-16 1.3E-20 125.1 10.8 79 67-151 12-93 (104)
235 2dgt_A RNA-binding protein 30; 99.7 3.8E-16 1.3E-20 122.2 10.7 79 159-245 6-85 (92)
236 2nlw_A Eukaryotic translation 99.7 2.2E-16 7.5E-21 126.9 9.5 82 66-149 11-100 (105)
237 2db1_A Heterogeneous nuclear r 99.7 1.1E-16 3.7E-21 131.5 7.8 82 66-148 13-97 (118)
238 2wbr_A GW182, gawky, LD47780P; 99.7 1.3E-16 4.3E-21 121.6 7.3 72 163-240 7-79 (89)
239 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.3E-16 7.9E-21 133.3 9.7 82 65-146 58-140 (140)
240 2err_A Ataxin-2-binding protei 99.7 1.7E-16 5.8E-21 128.4 8.5 84 157-242 23-107 (109)
241 2nlw_A Eukaryotic translation 99.7 2.4E-16 8.1E-21 126.7 9.0 81 160-242 12-100 (105)
242 1l3k_A Heterogeneous nuclear r 99.7 1.5E-16 5E-21 142.1 8.5 130 19-152 57-186 (196)
243 1x5o_A RNA binding motif, sing 99.7 2.7E-16 9.2E-21 128.2 9.3 83 159-242 21-112 (114)
244 2dnn_A RNA-binding protein 12; 99.7 1.9E-16 6.5E-21 127.8 8.3 77 70-148 16-92 (109)
245 1x4d_A Matrin 3; structural ge 99.7 1.3E-16 4.3E-21 127.0 7.1 78 67-150 12-93 (102)
246 2cpi_A CCR4-NOT transcription 99.7 1.1E-16 3.6E-21 130.1 6.9 85 66-150 11-102 (111)
247 1x5o_A RNA binding motif, sing 99.7 3.3E-16 1.1E-20 127.7 9.8 83 65-148 20-111 (114)
248 2cq1_A PTB-like protein L; RRM 99.7 2.5E-16 8.6E-21 125.3 8.7 80 66-151 11-93 (101)
249 2dha_A FLJ20171 protein; RRM d 99.7 1.4E-16 4.8E-21 131.4 7.5 79 68-147 21-103 (123)
250 2cpd_A Apobec-1 stimulating pr 99.7 7.2E-16 2.5E-20 122.4 11.2 80 158-245 10-92 (99)
251 2cpj_A Non-POU domain-containi 99.7 4.1E-16 1.4E-20 123.8 9.7 81 160-246 12-93 (99)
252 2g4b_A Splicing factor U2AF 65 99.6 2E-16 6.7E-21 138.2 8.4 119 19-147 53-172 (172)
253 1x4g_A Nucleolysin TIAR; struc 99.6 4.6E-16 1.6E-20 125.8 10.0 80 161-246 23-103 (109)
254 2err_A Ataxin-2-binding protei 99.6 2.5E-16 8.4E-21 127.5 8.3 84 64-149 23-107 (109)
255 2a3j_A U1 small nuclear ribonu 99.6 5.5E-16 1.9E-20 128.6 10.6 82 66-150 25-111 (127)
256 2cqh_A IGF-II mRNA-binding pro 99.6 3.2E-16 1.1E-20 122.9 8.7 79 161-246 6-87 (93)
257 1wf0_A TDP-43, TAR DNA-binding 99.6 2.3E-16 7.8E-21 122.4 7.7 79 162-246 4-82 (88)
258 2krb_A Eukaryotic translation 99.6 2.2E-16 7.4E-21 120.6 7.5 72 70-143 1-80 (81)
259 2ytc_A PRE-mRNA-splicing facto 99.6 5.9E-16 2E-20 119.1 10.0 78 157-240 6-85 (85)
260 1x4c_A Splicing factor, argini 99.6 8.3E-16 2.8E-20 124.1 11.2 79 67-152 12-96 (108)
261 2xs2_A Deleted in azoospermia- 99.6 1.7E-16 5.7E-21 126.8 7.0 83 66-150 5-87 (102)
262 2e5j_A Methenyltetrahydrofolat 99.6 4.7E-16 1.6E-20 123.0 9.5 81 159-244 15-96 (97)
263 2hgn_A Heterogeneous nuclear r 99.6 9.1E-17 3.1E-21 135.3 5.5 83 66-150 42-124 (139)
264 2dnp_A RNA-binding protein 14; 99.6 6.7E-16 2.3E-20 120.3 10.0 78 160-245 6-84 (90)
265 2hvz_A Splicing factor, argini 99.6 3.6E-16 1.2E-20 124.6 8.6 77 164-245 1-78 (101)
266 2dnq_A RNA-binding protein 4B; 99.6 8.1E-16 2.8E-20 119.8 10.4 78 66-151 4-82 (90)
267 1why_A Hypothetical protein ri 99.6 5.9E-16 2E-20 122.4 9.7 78 160-243 14-94 (97)
268 2lmi_A GRSF-1, G-rich sequence 99.6 1.4E-16 4.9E-21 128.4 6.2 83 65-148 6-91 (107)
269 3d2w_A TAR DNA-binding protein 99.6 4E-16 1.4E-20 121.3 8.5 80 159-244 7-86 (89)
270 1fj7_A Nucleolin RBD1, protein 99.6 6.4E-17 2.2E-21 128.9 4.0 82 67-150 14-96 (101)
271 2krb_A Eukaryotic translation 99.6 2.3E-16 7.9E-21 120.4 6.9 71 164-236 2-80 (81)
272 2fc8_A NCL protein; structure 99.6 4.6E-16 1.6E-20 124.1 8.7 84 65-151 10-94 (102)
273 2fc9_A NCL protein; structure 99.6 4.7E-16 1.6E-20 123.9 8.7 82 66-151 11-93 (101)
274 3pgw_S U1-70K; protein-RNA com 99.6 8.9E-16 3.1E-20 153.8 12.8 84 67-150 99-183 (437)
275 2e5g_A U6 snRNA-specific termi 99.6 1.2E-15 4E-20 120.0 10.7 80 162-246 7-86 (94)
276 1why_A Hypothetical protein ri 99.6 8.6E-16 2.9E-20 121.4 9.9 79 66-150 13-94 (97)
277 2cpx_A Hypothetical protein FL 99.6 2.1E-16 7.2E-21 129.0 6.5 86 66-151 21-107 (115)
278 1x4f_A Matrin 3; structural ge 99.6 3.9E-16 1.3E-20 126.1 7.7 79 67-151 22-104 (112)
279 1b7f_A Protein (SXL-lethal pro 99.6 5.1E-16 1.7E-20 134.9 9.1 119 19-146 47-168 (168)
280 1wf1_A RNA-binding protein RAL 99.6 8E-16 2.7E-20 124.6 9.6 76 161-244 25-102 (110)
281 1x4g_A Nucleolysin TIAR; struc 99.6 7.5E-16 2.5E-20 124.6 9.2 80 66-151 21-101 (109)
282 1fjc_A Nucleolin RBD2, protein 99.6 6.6E-16 2.3E-20 121.8 8.6 82 158-244 11-93 (96)
283 2a3j_A U1 small nuclear ribonu 99.6 8.3E-16 2.8E-20 127.5 9.3 81 160-243 26-111 (127)
284 2dnl_A Cytoplasmic polyadenyla 99.6 6.3E-16 2.1E-20 126.1 8.5 78 161-240 6-86 (114)
285 2jvr_A Nucleolar protein 3; RN 99.6 4.9E-16 1.7E-20 125.7 7.7 79 66-148 24-104 (111)
286 2f3j_A RNA and export factor b 99.6 1.1E-15 3.7E-20 134.6 10.4 83 160-243 85-168 (177)
287 2la4_A Nuclear and cytoplasmic 99.6 6.3E-16 2.1E-20 123.1 8.0 78 65-148 22-100 (101)
288 2lcw_A RNA-binding protein FUS 99.4 2.8E-17 9.6E-22 134.6 0.0 85 67-151 4-97 (116)
289 2e5j_A Methenyltetrahydrofolat 99.6 1.2E-15 4.2E-20 120.5 9.3 80 65-149 14-94 (97)
290 2cpj_A Non-POU domain-containi 99.6 1.2E-15 4E-20 121.1 9.1 80 65-150 10-90 (99)
291 2ytc_A PRE-mRNA-splicing facto 99.6 1.6E-15 5.5E-20 116.7 9.7 76 65-146 7-84 (85)
292 2f3j_A RNA and export factor b 99.6 1.2E-15 4.2E-20 134.3 10.0 82 67-149 85-167 (177)
293 4f02_A Polyadenylate-binding p 99.6 2.1E-16 7E-21 143.6 5.2 122 19-149 59-181 (213)
294 2jvo_A Nucleolar protein 3; nu 99.6 7.3E-16 2.5E-20 124.4 7.8 80 158-245 26-106 (108)
295 3nmr_A Cugbp ELAV-like family 99.6 8.6E-16 2.9E-20 134.3 8.9 122 19-146 49-174 (175)
296 2dgu_A Heterogeneous nuclear r 99.6 1.8E-15 6.2E-20 121.0 10.0 80 66-153 7-87 (103)
297 1fxl_A Paraneoplastic encephal 99.6 7.6E-16 2.6E-20 133.5 8.4 119 19-146 46-167 (167)
298 3beg_B Splicing factor, argini 99.6 8.1E-16 2.8E-20 125.6 7.9 72 161-239 14-86 (115)
299 2la4_A Nuclear and cytoplasmic 99.6 6.6E-16 2.3E-20 123.0 7.2 75 162-242 26-101 (101)
300 2kvi_A Nuclear polyadenylated 99.6 6.3E-16 2.1E-20 122.0 6.9 77 160-244 7-85 (96)
301 2voo_A Lupus LA protein; RNA-b 99.6 3.4E-15 1.2E-19 133.3 12.0 122 121-243 63-188 (193)
302 2j8a_A Histone-lysine N-methyl 99.6 1.1E-15 3.9E-20 124.2 7.9 78 164-241 3-95 (136)
303 2e44_A Insulin-like growth fac 99.6 2.5E-15 8.4E-20 118.5 9.6 81 160-244 12-94 (96)
304 1x5p_A Negative elongation fac 99.6 5.9E-15 2E-19 116.6 11.7 79 160-246 12-91 (97)
305 1whx_A Hypothetical protein ri 99.6 1.5E-15 5.3E-20 123.1 8.4 78 67-150 7-85 (111)
306 2dgt_A RNA-binding protein 30; 99.6 2.4E-15 8.3E-20 117.6 9.2 79 65-151 5-84 (92)
307 2cq2_A Hypothetical protein LO 99.6 2.4E-15 8.3E-20 121.5 9.2 78 161-244 23-108 (114)
308 2yh0_A Splicing factor U2AF 65 99.6 6.6E-16 2.3E-20 138.0 6.5 131 19-150 53-195 (198)
309 2dnp_A RNA-binding protein 14; 99.6 3.2E-15 1.1E-19 116.4 9.6 77 66-150 5-82 (90)
310 2xnq_A Nuclear polyadenylated 99.6 3.1E-15 1.1E-19 118.2 9.5 77 64-148 16-94 (97)
311 3egn_A RNA-binding protein 40; 99.6 9E-16 3.1E-20 130.4 6.8 86 160-245 42-133 (143)
312 1nu4_A U1A RNA binding domain; 99.6 9.4E-16 3.2E-20 121.1 6.4 82 160-244 5-91 (97)
313 2jvo_A Nucleolar protein 3; nu 99.6 2.1E-15 7.3E-20 121.7 8.5 79 64-150 25-104 (108)
314 2cjk_A Nuclear polyadenylated 99.6 4.2E-16 1.4E-20 135.4 4.7 118 18-149 46-166 (167)
315 2dnl_A Cytoplasmic polyadenyla 99.6 1.5E-15 5E-20 123.9 7.5 77 68-146 6-85 (114)
316 2cq2_A Hypothetical protein LO 99.6 2.4E-15 8.2E-20 121.5 8.6 82 64-151 19-108 (114)
317 2e5g_A U6 snRNA-specific termi 99.6 5.5E-15 1.9E-19 116.0 10.6 78 67-150 5-83 (94)
318 1whx_A Hypothetical protein ri 99.6 1.9E-15 6.6E-20 122.6 8.1 77 161-243 8-85 (111)
319 3d2w_A TAR DNA-binding protein 99.6 1.7E-15 6E-20 117.7 7.5 80 65-150 6-85 (89)
320 2j8a_A Histone-lysine N-methyl 99.6 1.9E-15 6.4E-20 122.9 7.6 78 71-148 3-95 (136)
321 1fjc_A Nucleolin RBD2, protein 99.6 1.4E-15 4.7E-20 120.0 6.5 80 66-150 12-92 (96)
322 2kvi_A Nuclear polyadenylated 99.6 3.1E-15 1E-19 118.0 8.3 78 66-151 6-85 (96)
323 1nu4_A U1A RNA binding domain; 99.6 1.4E-15 4.8E-20 120.1 6.3 81 67-150 5-90 (97)
324 1wf1_A RNA-binding protein RAL 99.6 3.6E-15 1.2E-19 120.7 8.8 77 66-150 23-101 (110)
325 2xnq_A Nuclear polyadenylated 99.6 4.5E-15 1.5E-19 117.3 9.0 76 159-242 18-95 (97)
326 2cpd_A Apobec-1 stimulating pr 99.6 7E-15 2.4E-19 116.6 10.0 79 65-151 10-91 (99)
327 3lqv_A PRE-mRNA branch site pr 99.6 2.7E-15 9.1E-20 122.4 7.8 80 161-243 6-86 (115)
328 1wg1_A KIAA1579 protein, homol 99.6 5.5E-15 1.9E-19 114.6 8.6 75 162-243 4-79 (88)
329 2e44_A Insulin-like growth fac 99.6 5E-15 1.7E-19 116.7 8.4 79 67-149 12-92 (96)
330 2cqh_A IGF-II mRNA-binding pro 99.6 3.9E-15 1.3E-19 116.6 7.7 79 66-151 4-85 (93)
331 1sjr_A Polypyrimidine tract-bi 99.6 8.8E-15 3E-19 125.5 9.8 79 161-243 44-125 (164)
332 1wg1_A KIAA1579 protein, homol 99.6 3.9E-15 1.3E-19 115.4 6.7 74 69-149 4-78 (88)
333 1wf0_A TDP-43, TAR DNA-binding 99.6 3.3E-15 1.1E-19 115.8 6.2 78 68-151 3-80 (88)
334 3egn_A RNA-binding protein 40; 99.6 1.5E-15 5.3E-20 128.9 4.6 85 66-150 41-131 (143)
335 1x5p_A Negative elongation fac 99.6 2.1E-14 7.3E-19 113.3 10.7 78 66-151 11-89 (97)
336 1sjr_A Polypyrimidine tract-bi 99.6 2.5E-14 8.4E-19 122.8 11.6 80 67-150 43-125 (164)
337 2voo_A Lupus LA protein; RNA-b 99.6 1.4E-14 4.7E-19 129.4 10.4 79 70-149 109-187 (193)
338 3beg_B Splicing factor, argini 99.5 6E-15 2.1E-19 120.4 7.4 74 68-148 14-93 (115)
339 1fje_B Nucleolin RBD12, protei 99.5 3.4E-15 1.2E-19 130.8 5.5 118 19-149 56-174 (175)
340 2hzc_A Splicing factor U2AF 65 99.5 2E-14 6.8E-19 110.9 9.0 72 161-238 4-86 (87)
341 3zzy_A Polypyrimidine tract-bi 99.5 2.6E-14 8.7E-19 118.2 8.9 78 161-243 26-107 (130)
342 2hzc_A Splicing factor U2AF 65 99.5 2.1E-14 7.1E-19 110.8 7.8 71 68-145 4-86 (87)
343 2pe8_A Splicing factor 45; RRM 99.5 3.5E-14 1.2E-18 113.7 9.3 82 161-242 6-94 (105)
344 2e5i_A Heterogeneous nuclear r 99.5 4.6E-14 1.6E-18 116.1 9.9 76 162-243 24-103 (124)
345 2diu_A KIAA0430 protein; struc 99.5 6.6E-14 2.3E-18 107.6 9.7 74 69-152 8-87 (96)
346 2diu_A KIAA0430 protein; struc 99.5 4.2E-14 1.4E-18 108.7 7.5 71 164-244 10-86 (96)
347 2bz2_A Negative elongation fac 99.5 4.2E-14 1.4E-18 116.4 8.1 78 160-245 36-114 (121)
348 3zzy_A Polypyrimidine tract-bi 99.5 9.6E-14 3.3E-18 114.7 10.1 77 69-150 27-107 (130)
349 3tyt_A Heterogeneous nuclear r 99.5 6E-14 2.1E-18 126.4 9.0 77 162-243 3-81 (205)
350 3sde_A Paraspeckle component 1 99.5 5E-14 1.7E-18 131.9 8.7 82 68-150 94-180 (261)
351 2pe8_A Splicing factor 45; RRM 99.5 1.1E-13 3.7E-18 110.8 9.4 81 68-148 6-93 (105)
352 2bz2_A Negative elongation fac 99.5 8.5E-14 2.9E-18 114.6 8.8 77 66-150 35-112 (121)
353 2e5i_A Heterogeneous nuclear r 99.5 2.7E-13 9.1E-18 111.5 11.2 73 72-150 27-103 (124)
354 3u1l_A PRE-mRNA-splicing facto 99.5 1.2E-13 4.3E-18 126.2 10.0 78 160-243 131-230 (240)
355 3pgw_A U1-A; protein-RNA compl 99.5 8.5E-14 2.9E-18 131.6 9.0 76 67-147 204-281 (282)
356 2dit_A HIV TAT specific factor 99.5 6.1E-13 2.1E-17 107.9 12.1 82 159-244 11-104 (112)
357 3u1l_A PRE-mRNA-splicing facto 99.4 1.3E-13 4.3E-18 126.2 8.4 80 65-150 129-230 (240)
358 2adc_A Polypyrimidine tract-bi 99.4 1.3E-13 4.4E-18 126.5 7.2 125 19-148 74-227 (229)
359 2d9o_A DNAJ (HSP40) homolog, s 99.4 1.2E-12 4.2E-17 103.5 11.2 68 173-246 27-94 (100)
360 1qm9_A Polypyrimidine tract-bi 99.4 1E-13 3.4E-18 124.0 5.2 125 19-148 43-196 (198)
361 3v4m_A Splicing factor U2AF 65 99.4 5E-13 1.7E-17 107.0 7.7 81 162-242 4-97 (105)
362 2dit_A HIV TAT specific factor 99.4 1.3E-12 4.5E-17 105.9 10.3 82 65-150 10-103 (112)
363 1jmt_A Splicing factor U2AF 35 99.4 2.5E-13 8.4E-18 108.6 5.1 71 168-239 20-103 (104)
364 3ue2_A Poly(U)-binding-splicin 99.4 1.1E-12 3.8E-17 107.0 7.3 80 162-241 19-108 (118)
365 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.1E-11 3.9E-16 97.9 12.4 77 68-150 8-91 (100)
366 3v4m_A Splicing factor U2AF 65 99.3 1.6E-12 5.6E-17 104.0 7.2 81 68-148 3-96 (105)
367 1jmt_A Splicing factor U2AF 35 99.3 7.4E-13 2.5E-17 105.8 3.1 71 75-146 20-103 (104)
368 3ue2_A Poly(U)-binding-splicin 99.3 3.9E-12 1.3E-16 103.8 7.4 80 69-148 19-108 (118)
369 3tht_A Alkylated DNA repair pr 99.3 1.2E-11 4E-16 119.1 9.3 78 63-146 11-96 (345)
370 3tht_A Alkylated DNA repair pr 99.2 3.3E-11 1.1E-15 116.0 9.8 76 159-240 14-97 (345)
371 3s6e_A RNA-binding protein 39; 99.2 6.9E-11 2.4E-15 95.7 8.2 76 162-241 6-92 (114)
372 3s6e_A RNA-binding protein 39; 99.1 3E-10 1E-14 91.9 7.9 78 67-148 4-92 (114)
373 1owx_A Lupus LA protein, SS-B, 99.0 4.4E-10 1.5E-14 91.2 8.0 75 160-240 15-94 (121)
374 2dnr_A Synaptojanin-1; RRM dom 99.0 2.1E-09 7.2E-14 81.8 9.3 75 163-245 7-89 (91)
375 1owx_A Lupus LA protein, SS-B, 99.0 1.2E-09 4E-14 88.7 8.2 75 66-146 14-93 (121)
376 2dnr_A Synaptojanin-1; RRM dom 98.8 1.1E-08 3.6E-13 77.9 7.2 73 69-149 6-86 (91)
377 1ufw_A Synaptojanin 2; RNP dom 98.7 1.6E-08 5.5E-13 77.3 6.0 72 162-241 14-94 (95)
378 3dxb_A Thioredoxin N-terminall 98.7 2.4E-08 8.1E-13 90.7 6.6 67 175-241 141-212 (222)
379 1ufw_A Synaptojanin 2; RNP dom 98.6 2.5E-08 8.5E-13 76.3 4.9 75 66-148 11-94 (95)
380 3dxb_A Thioredoxin N-terminall 98.6 1.1E-07 3.7E-12 86.3 9.3 67 82-148 141-212 (222)
381 2dhx_A Poly (ADP-ribose) polym 98.4 3.8E-06 1.3E-10 64.9 11.3 89 68-176 6-99 (104)
382 2l9w_A U4/U6 snRNA-associated- 98.3 2.7E-06 9.3E-11 66.3 8.1 72 162-239 20-97 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.0 3.1E-05 1.1E-09 59.9 9.5 74 163-244 8-86 (104)
384 2l9w_A U4/U6 snRNA-associated- 98.0 2.2E-05 7.6E-10 61.2 8.2 74 67-146 18-97 (117)
385 1whv_A Poly(A)-specific ribonu 97.5 0.00029 1E-08 53.7 6.9 55 69-132 15-69 (100)
386 1wey_A Calcipressin 1; structu 97.4 0.00099 3.4E-08 51.7 9.1 74 70-149 5-84 (104)
387 1wwh_A Nucleoporin 35, nucleop 97.3 0.0014 4.8E-08 52.3 9.2 74 160-240 21-95 (119)
388 3ctr_A Poly(A)-specific ribonu 97.2 0.00048 1.6E-08 52.7 5.6 52 72-132 8-59 (101)
389 1wey_A Calcipressin 1; structu 97.1 0.0013 4.3E-08 51.1 6.9 74 163-242 5-84 (104)
390 1uw4_A UPF3X; nonsense mediate 96.9 0.0025 8.5E-08 48.5 6.9 63 71-133 2-66 (91)
391 1wwh_A Nucleoporin 35, nucleop 96.9 0.0031 1.1E-07 50.3 7.5 72 67-145 21-93 (119)
392 1whv_A Poly(A)-specific ribonu 96.8 0.0039 1.3E-07 47.6 7.4 52 164-224 17-68 (100)
393 3p3d_A Nucleoporin 53; structu 96.3 0.016 5.4E-07 46.9 8.3 78 163-241 7-98 (132)
394 1uw4_A UPF3X; nonsense mediate 96.3 0.012 4E-07 44.8 7.0 61 164-224 2-64 (91)
395 3ctr_A Poly(A)-specific ribonu 96.3 0.0036 1.2E-07 47.9 4.0 52 164-224 7-58 (101)
396 3pq1_A Poly(A) RNA polymerase; 96.1 0.0033 1.1E-07 62.4 3.9 58 70-133 53-110 (464)
397 3pq1_A Poly(A) RNA polymerase; 95.8 0.0053 1.8E-07 60.9 4.1 58 162-225 52-109 (464)
398 2l08_A Regulator of nonsense t 95.1 0.018 6.1E-07 44.1 3.8 65 69-133 8-74 (97)
399 2l08_A Regulator of nonsense t 94.8 0.06 2.1E-06 41.2 6.0 63 163-225 9-73 (97)
400 3p3d_A Nucleoporin 53; structu 94.5 0.047 1.6E-06 44.1 5.1 76 70-146 7-96 (132)
401 3d45_A Poly(A)-specific ribonu 90.7 0.39 1.3E-05 48.4 6.8 55 70-133 440-494 (507)
402 3d45_A Poly(A)-specific ribonu 80.7 4 0.00014 41.0 8.1 53 164-225 441-493 (507)
403 4eyt_A Telomerase associated p 74.5 9.8 0.00034 28.1 6.4 55 163-225 12-66 (129)
404 3fry_A Probable copper-exporti 60.5 30 0.001 23.7 6.7 58 163-227 6-63 (73)
405 3lpe_A Putative transcription 60.0 50 0.0017 24.4 8.1 23 111-133 49-71 (92)
406 4eyt_A Telomerase associated p 57.1 56 0.0019 24.1 7.5 57 68-132 10-66 (129)
407 4gyx_A Type III collagen fragm 48.1 18 0.00063 20.0 2.8 14 407-420 5-19 (31)
408 2hiy_A Hypothetical protein; C 38.3 1.2E+02 0.004 25.7 7.9 124 72-213 8-144 (183)
409 2g1d_A 30S ribosomal protein S 37.1 47 0.0016 25.1 4.6 47 174-221 30-81 (98)
410 2cu1_A Mitogen-activated prote 35.7 71 0.0024 24.1 5.2 67 75-149 21-88 (103)
411 4hhu_A OR280; engineered prote 35.7 1.2E+02 0.0041 23.4 6.7 100 120-239 11-129 (170)
412 2v94_A RPS24, 30S ribosomal pr 34.0 62 0.0021 24.9 4.9 47 174-221 38-89 (107)
413 2xzm_P RPS24E; ribosome, trans 33.2 74 0.0025 25.9 5.4 48 173-221 31-83 (149)
414 2lfv_A Protein DAMX; cell divi 38.7 9.4 0.00032 29.5 0.0 54 175-230 34-89 (106)
415 4e8u_A Putative uncharacterize 32.1 81 0.0028 26.4 5.7 48 72-122 14-72 (172)
416 3u5c_Y RP50, 40S ribosomal pro 29.7 66 0.0023 25.8 4.5 47 174-221 34-85 (135)
417 3dxs_X Copper-transporting ATP 28.7 1.3E+02 0.0045 20.0 5.9 57 164-226 4-64 (74)
418 1xn9_A 30S ribosomal protein S 27.3 1.5E+02 0.005 22.4 5.9 50 79-129 27-81 (101)
419 2inr_A DNA topoisomerase 4 sub 27.0 89 0.003 31.1 5.9 60 70-131 275-338 (514)
420 1ywx_A 30S ribosomal protein S 27.0 1.5E+02 0.0051 22.4 5.9 48 79-127 27-79 (102)
421 3j21_T 50S ribosomal protein L 26.2 1.9E+02 0.0066 21.1 6.4 55 73-130 25-81 (86)
422 2cu1_A Mitogen-activated prote 24.3 1.9E+02 0.0065 21.8 5.8 63 167-237 20-85 (103)
423 3fut_A Dimethyladenosine trans 23.3 1.1E+02 0.0036 27.6 5.4 46 71-133 111-156 (271)
424 4e8u_A Putative uncharacterize 22.1 1.3E+02 0.0046 25.1 5.2 36 176-214 34-71 (172)
425 2i9x_A Putative septation prot 21.5 82 0.0028 23.2 3.4 26 189-214 5-30 (87)
426 1vq8_S 50S ribosomal protein L 21.0 2.4E+02 0.0084 20.4 6.1 55 73-130 24-80 (85)
427 3ilw_A DNA gyrase subunit A; D 20.2 1.1E+02 0.0037 30.1 4.9 62 68-130 234-299 (470)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=6.1e-36 Score=268.90 Aligned_cols=180 Identities=32% Similarity=0.558 Sum_probs=155.0
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEE
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTN 144 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~ 144 (425)
..+...++|||+|||+++|+++|+++|+.||+|.+|+|++++.+++++|||||+|.+.++|++||+.....+.++.+.+.
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPK 87 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeee
Confidence 34556789999999999999999999999999999999999999999999999999999999999997789999999999
Q ss_pred ecccCCCCCCCCCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhc
Q 014397 145 LAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVD 224 (425)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~ 224 (425)
++....... ........++|||+|||+++|+++|+++|++||.|+.|.|+.++.+++++|||||+|.+.++|.+||+.
T Consensus 88 ~~~~~~~~~--~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 165 (196)
T 1l3k_A 88 RAVSREDSQ--RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165 (196)
T ss_dssp ECCC-------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred cccCccccc--ccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh
Confidence 987654322 223344568999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCccCCeEEEEEEcccCCCCC
Q 014397 225 PIKTVDGKQLNCRLADNKKAKP 246 (425)
Q Consensus 225 ~~~~~~gr~i~v~~a~~~~~~~ 246 (425)
++..|+|+.|.|+++.++....
T Consensus 166 ~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 166 KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp SCCEETTEECEEEECC------
T ss_pred CCcEECCEEEEEEecCChhHhc
Confidence 8899999999999998876654
No 2
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1e-34 Score=265.06 Aligned_cols=169 Identities=21% Similarity=0.290 Sum_probs=150.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEec
Q 014397 68 PTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLA 146 (425)
Q Consensus 68 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~ 146 (425)
.+.++|||+|||+++||++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.++ ..+.++.+.+.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 456899999999999999999999999999999999999999999999999999999999999888 7889999999887
Q ss_pred ccCCCCCCCCCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-
Q 014397 147 VAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP- 225 (425)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~- 225 (425)
..... ......++|||+|||+++|+++|+++|++||.|++|+|+.|. +.++|||||+|.+.++|++||+.+
T Consensus 93 ~~~~~------~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~ln 164 (213)
T 4f02_A 93 QRDPS------LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN 164 (213)
T ss_dssp CCCTH------HHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHT
T ss_pred ccccc------ccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhC
Confidence 54321 122345789999999999999999999999999999999884 457999999999999999999985
Q ss_pred CCccCCeEEEEEEcccCCC
Q 014397 226 IKTVDGKQLNCRLADNKKA 244 (425)
Q Consensus 226 ~~~~~gr~i~v~~a~~~~~ 244 (425)
+..|+|++|.|++++++..
T Consensus 165 g~~~~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 165 GMLLNDRKVFVGRFKSRKE 183 (213)
T ss_dssp TCEETTEECEEEECCCHHH
T ss_pred CCEECCEEEEEEEcCCCcc
Confidence 6999999999999976643
No 3
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=1.9e-34 Score=252.41 Aligned_cols=165 Identities=28% Similarity=0.572 Sum_probs=150.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEEeccc
Q 014397 69 TQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLAVA 148 (425)
Q Consensus 69 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~~~~~ 148 (425)
+.++|||+|||+++|+++|+++|++||+|.+|++++++.+++++|||||+|.+.++|++||+. ...+.++.+.+.++..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccc
Confidence 467899999999999999999999999999999999998999999999999999999999996 4678899988887754
Q ss_pred CCCCCCCCCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCc
Q 014397 149 GNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKT 228 (425)
Q Consensus 149 ~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~ 228 (425)
.. .....++|||+|||+++|+++|+++|++||.|++|.|+.++.+++++|||||+|.+.++|++|++.+...
T Consensus 81 ~~--------~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~ 152 (167)
T 2cjk_A 81 RD--------EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFID 152 (167)
T ss_dssp HH--------HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEEC
T ss_pred hh--------hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEE
Confidence 22 2234578999999999999999999999999999999999999999999999999999999999955689
Q ss_pred cCCeEEEEEEcccC
Q 014397 229 VDGKQLNCRLADNK 242 (425)
Q Consensus 229 ~~gr~i~v~~a~~~ 242 (425)
|+|++|.|.++.++
T Consensus 153 ~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 153 FKDRKIEIKRAEPR 166 (167)
T ss_dssp SSSSCEEEEECCCC
T ss_pred eCCeEEEEeecCCC
Confidence 99999999999875
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-33 Score=245.29 Aligned_cols=164 Identities=22% Similarity=0.407 Sum_probs=149.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecccC
Q 014397 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAVAG 149 (425)
Q Consensus 71 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~~~ 149 (425)
++|||+|||+++|+++|+++|++||+|.+|+++.++ +++++|||||+|.+.++|++|++.++ ..+.++.+.+.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999999996 57899999999999999999997777 8899999999998654
Q ss_pred CCCCCCCCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCc
Q 014397 150 NSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKT 228 (425)
Q Consensus 150 ~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~ 228 (425)
.. ......++|||+|||+++|+++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++|++.+ +..
T Consensus 80 ~~------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 153 (166)
T 3md3_A 80 QQ------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD 153 (166)
T ss_dssp CC------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred CC------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc
Confidence 32 23345689999999999999999999999999999999999999999999999999999999999975 689
Q ss_pred cCCeEEEEEEccc
Q 014397 229 VDGKQLNCRLADN 241 (425)
Q Consensus 229 ~~gr~i~v~~a~~ 241 (425)
|+|++|.|+++++
T Consensus 154 ~~g~~i~v~~a~~ 166 (166)
T 3md3_A 154 LNGRPLRINWAAK 166 (166)
T ss_dssp ETTEECEEEESCC
T ss_pred cCCcEEEEEecCC
Confidence 9999999999863
No 5
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=9.5e-34 Score=258.49 Aligned_cols=178 Identities=21% Similarity=0.383 Sum_probs=153.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecc
Q 014397 69 TQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAV 147 (425)
Q Consensus 69 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~ 147 (425)
..++|||+|||+++|+++|+++|+.||+|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|.++.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 35789999999999999999999999999999999998899999999999999999999999766 88999999998875
Q ss_pred cCCCCCCC---CCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhc
Q 014397 148 AGNSGNST---NNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVD 224 (425)
Q Consensus 148 ~~~~~~~~---~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~ 224 (425)
........ ........++|||+|||+++|+++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|.+|++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 186 (216)
T 2qfj_A 107 NIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 186 (216)
T ss_dssp CCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHH
Confidence 53321100 001223457999999999999999999999999999999999999999999999999999999999998
Q ss_pred C-CCccCCeEEEEEEcccCCCCC
Q 014397 225 P-IKTVDGKQLNCRLADNKKAKP 246 (425)
Q Consensus 225 ~-~~~~~gr~i~v~~a~~~~~~~ 246 (425)
+ +..|+|+.|.|.++..+....
T Consensus 187 l~g~~~~g~~i~V~~a~~~~~~~ 209 (216)
T 2qfj_A 187 MNLFDLGGQYLRVGKAVTPPMPL 209 (216)
T ss_dssp HTTCBCSSSBCEEEECSSCSSTT
T ss_pred ccCCEeCCcEEEEEEecCCCCCC
Confidence 5 689999999999998765443
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=4.2e-33 Score=243.95 Aligned_cols=163 Identities=28% Similarity=0.429 Sum_probs=150.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecc
Q 014397 69 TQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAV 147 (425)
Q Consensus 69 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~ 147 (425)
+.++|||+|||+++|+++|+++|++||+|.+|++++++.+++++|||||+|.++++|++|++.++ ..+.++.+.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46889999999999999999999999999999999999899999999999999999999998766 88999999999986
Q ss_pred cCCCCCCCCCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-C
Q 014397 148 AGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-I 226 (425)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~ 226 (425)
.... ....++|||.|||.++|+++|+++|++||.|++|.|+.++.+++++|||||+|.+.++|.+|++.+ +
T Consensus 82 ~~~~--------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 153 (168)
T 1b7f_A 82 PGGE--------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNN 153 (168)
T ss_dssp CCSS--------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCcc--------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 5432 234589999999999999999999999999999999999889999999999999999999999985 5
Q ss_pred CccCC--eEEEEEEc
Q 014397 227 KTVDG--KQLNCRLA 239 (425)
Q Consensus 227 ~~~~g--r~i~v~~a 239 (425)
..|++ ++|.|++|
T Consensus 154 ~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 154 VIPEGGSQPLSVRLA 168 (168)
T ss_dssp CCCTTCSSCCEEEEC
T ss_pred CEecCCCeEEEEEeC
Confidence 88888 99999886
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=7.2e-33 Score=241.92 Aligned_cols=163 Identities=23% Similarity=0.417 Sum_probs=149.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecc
Q 014397 69 TQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAV 147 (425)
Q Consensus 69 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~ 147 (425)
+.++|||+|||+++|+++|+++|+.||+|.+|+++.++.+++++|||||+|.++++|++|++.++ ..+.++.+.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 35789999999999999999999999999999999998899999999999999999999999766 88999999999886
Q ss_pred cCCCCCCCCCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-C
Q 014397 148 AGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-I 226 (425)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~ 226 (425)
... .....++|||+|||+++|+++|+++|++||.|++|+|+.+..+++++|||||+|.+.++|++|++.+ +
T Consensus 81 ~~~--------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 152 (167)
T 1fxl_A 81 PSS--------ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 152 (167)
T ss_dssp CCC--------GGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCc--------ccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcC
Confidence 432 2344578999999999999999999999999999999999889999999999999999999999985 6
Q ss_pred CccCCeE--EEEEEc
Q 014397 227 KTVDGKQ--LNCRLA 239 (425)
Q Consensus 227 ~~~~gr~--i~v~~a 239 (425)
..|+|+. |.|++|
T Consensus 153 ~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 153 QKPSGATEPITVKFA 167 (167)
T ss_dssp CCCTTCSSCCEEEEC
T ss_pred CccCCCccceEEEeC
Confidence 8999975 778775
No 8
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=4.2e-32 Score=239.01 Aligned_cols=164 Identities=24% Similarity=0.340 Sum_probs=143.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCC--CcccEEEEEecchHHHHHHHhcCC-CCcC---CceEE
Q 014397 69 TQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATG--KSKGYGFITFKHIDGAMLALKEPS-KKID---GRVTV 142 (425)
Q Consensus 69 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g--~skG~aFV~F~~~e~A~~Al~~~~-~~~~---gr~~~ 142 (425)
+.++|||+|||+++|+++|+++|++||+|.+|++++++.++ +++|||||+|.+.++|++|++.++ ..+. .+.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46799999999999999999999999999999999998776 899999999999999999999877 4443 56677
Q ss_pred EEecccCCCCCCCCCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHH
Q 014397 143 TNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAAL 222 (425)
Q Consensus 143 v~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~ 222 (425)
+.++.... ......++|||+|||+++|+++|+++|++||.|++|.|+.+. +++++|||||+|.+.++|++|+
T Consensus 82 ~~~~~~~~-------~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~ 153 (175)
T 3nmr_A 82 MKPADSEK-------NNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAI 153 (175)
T ss_dssp EEECGGGC-------CSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHH
T ss_pred Eccccccc-------cccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHH
Confidence 76665432 233466899999999999999999999999999999999985 6999999999999999999999
Q ss_pred hcCC-CccC---CeEEEEEEcc
Q 014397 223 VDPI-KTVD---GKQLNCRLAD 240 (425)
Q Consensus 223 ~~~~-~~~~---gr~i~v~~a~ 240 (425)
+.++ ..+. +++|.|++|.
T Consensus 154 ~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 154 KAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHTTSCCCTTCSSCCEEEECC
T ss_pred HHhcCCcccCCCCCCeEEEecC
Confidence 8864 5554 4999999874
No 9
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.98 E-value=8.5e-32 Score=256.38 Aligned_cols=204 Identities=23% Similarity=0.319 Sum_probs=171.2
Q ss_pred CCCCCCChHHHHHHHHhhchhhHHHHHHHhhhccchhhhhhhhcccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE
Q 014397 20 ESPNRLTPQDARKIVERLTSDQLLDVLSSAVARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEE 99 (425)
Q Consensus 20 ~~~~~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~ 99 (425)
..+.|.+.++|+++++.++...+... ..........++|||+|||+++|+++|+++|+.||.|.+
T Consensus 60 afV~f~~~~~A~~A~~~l~~~~~~g~---------------~i~v~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~ 124 (284)
T 3smz_A 60 AFVTLLNGEQAEAAINAFHQSRLRER---------------ELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLER 124 (284)
T ss_dssp EEEEESSHHHHHHHHHHHTTCEETTE---------------ECEEEECCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEE
T ss_pred EEEEeCCHHHHHHHHHHcCCCeeCCe---------------EEEEEecCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeE
Confidence 34566666677776666655443210 001112345689999999999999999999999999999
Q ss_pred EEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecccCCCCCCCCCCCCcccceEEEeecCCcc-cH
Q 014397 100 AVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDM-SA 177 (425)
Q Consensus 100 v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~-te 177 (425)
|+++.++.+++++|||||+|.+.++|++|++.++ ..+.++.|.|.++..... .......++|||+|||+++ |+
T Consensus 125 ~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~-----~~~~~~~~~l~v~nlp~~~~~~ 199 (284)
T 3smz_A 125 CFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQL-----TPALLHSRCLCVDRLPPGFNDV 199 (284)
T ss_dssp EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGC-----CTTTTSCSEEEEECCCTTCCCH
T ss_pred EEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC-----CcccCCccEEEEecCCcccCCH
Confidence 9999999899999999999999999999997777 889999999999876543 2233566899999999995 99
Q ss_pred HHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEcccCCC
Q 014397 178 DKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLADNKKA 244 (425)
Q Consensus 178 ~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a~~~~~ 244 (425)
++|+++|++||.|.+|.|+.+. +++++|+|||+|.+.++|.+|++.+ +..|+|++|.|.+++++..
T Consensus 200 ~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 200 DALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp HHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred HHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 9999999999999999999985 8999999999999999999999985 6999999999999987655
No 10
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=5.7e-32 Score=243.30 Aligned_cols=170 Identities=20% Similarity=0.314 Sum_probs=144.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcC
Q 014397 69 TQRKLFIRGLGWDTTTEGLRSIFSAY----G-------ELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKID 137 (425)
Q Consensus 69 ~~~~lfV~nLp~~~te~~l~~~F~~~----G-------~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~ 137 (425)
..++|||+|||+++|+++|+++|+.| + .|.++.+ ++++|||||+|.+.++|++||+.....|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHGGGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHHHhcCCEEc
Confidence 46899999999999999999999999 4 4555544 45689999999999999999944448899
Q ss_pred CceEEEEecccCCCCCCC------------CCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcc
Q 014397 138 GRVTVTNLAVAGNSGNST------------NNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPK 205 (425)
Q Consensus 138 gr~~~v~~~~~~~~~~~~------------~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~k 205 (425)
++.|.|.++......... ........++|||+|||+++|+++|+++|++||.|++|.|+.++.+++++
T Consensus 77 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~ 156 (198)
T 2yh0_A 77 GQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK 156 (198)
T ss_dssp TEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEE
T ss_pred CceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcc
Confidence 999999988654322110 11123456899999999999999999999999999999999998899999
Q ss_pred eEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEcccCCC
Q 014397 206 GFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLADNKKA 244 (425)
Q Consensus 206 G~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a~~~~~ 244 (425)
|||||+|.+.++|++|++.+ +..|+|+.|.|++++++..
T Consensus 157 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 157 GYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred eEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99999999999999999985 6899999999999987644
No 11
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=5e-31 Score=252.02 Aligned_cols=171 Identities=18% Similarity=0.281 Sum_probs=143.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEec
Q 014397 69 TQRKLFIRGLGWDTTTEGLRSIFSAYG-ELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLA 146 (425)
Q Consensus 69 ~~~~lfV~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~ 146 (425)
..++|||+|||+++|+++|+++|+.|| +|.+|+++.++. ++++|||||+|.+.++|++||+.++ ..+.++.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 578999999999999999999999999 999999999864 8899999999999999999999776 8899999999998
Q ss_pred ccCCCCCCCCCCCCcccceEEEeecCCc-ccHHHHHHHHhhcCCceeeeeeccCC-CCCcceEEEEEeCCHHHHHHHHhc
Q 014397 147 VAGNSGNSTNNPVDVSLRKIFVGNVPND-MSADKLLAHFACYGEIEEGPLGFDKQ-TGKPKGFALFVYKTAEGAQAALVD 224 (425)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~l~V~nL~~~-~te~~L~~~F~~~G~v~~v~i~~d~~-~g~~kG~afV~F~~~~~A~~A~~~ 224 (425)
......... .......++|||.|||++ +|+++|+++|++||.|+.|+|+.+.. |++++|||||+|.+.++|.+|| .
T Consensus 195 ~~~~~~~~~-~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~ 272 (292)
T 2ghp_A 195 NPLEKSKRT-DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-Q 272 (292)
T ss_dssp CCC----------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-G
T ss_pred CCCcccccc-cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-H
Confidence 765432221 123456789999999999 99999999999999999999999876 5999999999999999999999 6
Q ss_pred C-CCccCCeEEEEEEcccC
Q 014397 225 P-IKTVDGKQLNCRLADNK 242 (425)
Q Consensus 225 ~-~~~~~gr~i~v~~a~~~ 242 (425)
+ +..|+|+.|.|.+++++
T Consensus 273 l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 273 MNRSLLGNREISVSLADKK 291 (292)
T ss_dssp GTTEEETTEEEEEEECCCC
T ss_pred hcCCEECCcEEEEEEecCC
Confidence 5 68999999999999875
No 12
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=1.1e-30 Score=229.57 Aligned_cols=158 Identities=20% Similarity=0.341 Sum_probs=140.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcC
Q 014397 69 TQRKLFIRGLGWDTTTEGLRSIFSAY----G-------ELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKID 137 (425)
Q Consensus 69 ~~~~lfV~nLp~~~te~~l~~~F~~~----G-------~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~ 137 (425)
+.++|||+|||+++|+++|+++|++| | .|.++++. +++|||||+|.++++|++||+.....+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHGGGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHHHhCCcEec
Confidence 46789999999999999999999999 6 66676664 3478999999999999999944448899
Q ss_pred CceEEEEecccCCCCCCCCCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHH
Q 014397 138 GRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEG 217 (425)
Q Consensus 138 gr~~~v~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~ 217 (425)
++.+.+.++..... ....++|||+|||+++|+++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++
T Consensus 77 g~~i~v~~~~~~~~--------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~ 148 (172)
T 2g4b_A 77 GQSLKIRRPHDYQP--------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINV 148 (172)
T ss_dssp TEECEEECCSSCCC--------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTH
T ss_pred CceeeecCCcccCC--------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHH
Confidence 99999998754322 2336899999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHhcC-CCccCCeEEEEEEcc
Q 014397 218 AQAALVDP-IKTVDGKQLNCRLAD 240 (425)
Q Consensus 218 A~~A~~~~-~~~~~gr~i~v~~a~ 240 (425)
|++|++.+ +..|+|++|.|++|.
T Consensus 149 A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 149 TDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp HHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHcCCCEECCeEEEEEeCC
Confidence 99999985 699999999999874
No 13
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=2.8e-31 Score=234.23 Aligned_cols=165 Identities=22% Similarity=0.304 Sum_probs=143.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEEe
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNL 145 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~~ 145 (425)
.+...++|||+|||+++|+++|+++|++||.|.. .++.+..+++++|||||+|.++++|++||+.....+.++.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEec
Confidence 4567889999999999999999999999998877 445555688999999999999999999997444889999999999
Q ss_pred cccCCCCCCCCCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC
Q 014397 146 AVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP 225 (425)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~ 225 (425)
+..... ......++|||+|||+++|+++|+++|++||.|..+ ..+++++|||||+|.+.++|.+|++.+
T Consensus 88 ~~~~~~------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l 156 (175)
T 1fje_B 88 PKGRDS------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEK 156 (175)
T ss_dssp CCCSSC------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHH
T ss_pred CCCccc------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHh
Confidence 876432 234567899999999999999999999999988766 468899999999999999999999985
Q ss_pred -CCccCCeEEEEEEcccC
Q 014397 226 -IKTVDGKQLNCRLADNK 242 (425)
Q Consensus 226 -~~~~~gr~i~v~~a~~~ 242 (425)
+..|+|++|.|+++.++
T Consensus 157 ~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 157 QGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp TEEEETTEEEEEEECSSC
T ss_pred CCCEECCeEEEEEecCCC
Confidence 59999999999999765
No 14
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=2.9e-30 Score=233.81 Aligned_cols=164 Identities=12% Similarity=0.116 Sum_probs=137.2
Q ss_pred CCCeEEEcCCC-CCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEec
Q 014397 69 TQRKLFIRGLG-WDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLA 146 (425)
Q Consensus 69 ~~~~lfV~nLp-~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~ 146 (425)
..++|||+||| +++|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|++||+.++ ..+.++.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46799999999 89999999999999999999999875 37999999999999999999888 8999999999998
Q ss_pred ccCCCCCCC-------------------CC----------CCCcccceEEEeecCCcccHHHHHHHHhhcCCc--eeeee
Q 014397 147 VAGNSGNST-------------------NN----------PVDVSLRKIFVGNVPNDMSADKLLAHFACYGEI--EEGPL 195 (425)
Q Consensus 147 ~~~~~~~~~-------------------~~----------~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v--~~v~i 195 (425)
......... .. ......++|||+|||+++|+++|+++|++||.| ++|+|
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 643211000 00 011235689999999999999999999999999 88998
Q ss_pred eccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCe----EEEEEEc
Q 014397 196 GFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGK----QLNCRLA 239 (425)
Q Consensus 196 ~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr----~i~v~~a 239 (425)
+.++ ++++|||||+|++.++|.+||+.+ +..|+++ ++.|+++
T Consensus 158 ~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 158 FSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 8774 566799999999999999999986 5788886 5666664
No 15
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=2e-29 Score=239.67 Aligned_cols=167 Identities=17% Similarity=0.220 Sum_probs=143.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCce
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLR----SIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRV 140 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~----~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~ 140 (425)
.....++|||+|||+++|+++|+ ++|+.||.|++|++++ +++++|||||+|.+.++|++||+.++ ..|.++.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34568899999999999999976 8999999999999875 67899999999999999999998887 8899999
Q ss_pred EEEEecccCCCCCCC-----------------------------------------------------------------
Q 014397 141 TVTNLAVAGNSGNST----------------------------------------------------------------- 155 (425)
Q Consensus 141 ~~v~~~~~~~~~~~~----------------------------------------------------------------- 155 (425)
|.|.++.........
T Consensus 82 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (282)
T 3pgw_A 82 MRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQP 161 (282)
T ss_pred EEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCC
Confidence 999998654421000
Q ss_pred --------------------------------------CCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeec
Q 014397 156 --------------------------------------NNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGF 197 (425)
Q Consensus 156 --------------------------------------~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~ 197 (425)
........++|||+|||+++|+++|+++|++||.|++|+|+.
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~ 241 (282)
T 3pgw_A 162 PYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP 241 (282)
T ss_pred CCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEec
Confidence 001223457899999999999999999999999999999986
Q ss_pred cCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccC-CeEEEEEEcc
Q 014397 198 DKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVD-GKQLNCRLAD 240 (425)
Q Consensus 198 d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~-gr~i~v~~a~ 240 (425)
++ +|||||+|.+.++|++||+.+ +..|+ |+.|.|.|++
T Consensus 242 ~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 242 GR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 64 589999999999999999987 58898 9999999986
No 16
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=3e-29 Score=231.38 Aligned_cols=167 Identities=19% Similarity=0.286 Sum_probs=142.5
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEE
Q 014397 66 ADPTQRKLFIRGLGW-DTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVT 143 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v 143 (425)
.....++|||+|||+ ++|+++|+++|++||.|++|+|+.++ +|||||+|.+.++|++||+.++ ..|.++.|.|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345678999999999 99999999999999999999999875 7899999999999999998766 8899999999
Q ss_pred EecccCCCCCCCC---------------------------CCCCcccceEEEeecCCcccHHHHHHHHhhcC-Cceeeee
Q 014397 144 NLAVAGNSGNSTN---------------------------NPVDVSLRKIFVGNVPNDMSADKLLAHFACYG-EIEEGPL 195 (425)
Q Consensus 144 ~~~~~~~~~~~~~---------------------------~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G-~v~~v~i 195 (425)
.++.......... .......++|||+|||+++|+++|+++|++|| .|++|+|
T Consensus 105 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i 184 (229)
T 2adc_A 105 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKF 184 (229)
T ss_dssp ECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEE
T ss_pred EEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEE
Confidence 9886542111100 01122368899999999999999999999999 9999999
Q ss_pred eccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccC-CeEEEEEEcccC
Q 014397 196 GFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVD-GKQLNCRLADNK 242 (425)
Q Consensus 196 ~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~-gr~i~v~~a~~~ 242 (425)
+.+ .++||||+|++.++|++||+.+ +..|+ +++|.|.+++++
T Consensus 185 ~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 185 FQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 653 2789999999999999999985 68899 999999999764
No 17
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=2.6e-29 Score=226.29 Aligned_cols=164 Identities=18% Similarity=0.288 Sum_probs=140.6
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEec
Q 014397 69 TQRKLFIRGLGW-DTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLA 146 (425)
Q Consensus 69 ~~~~lfV~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~ 146 (425)
..++|||+|||+ ++|+++|+++|+.||.|.+|+++.++ +|||||+|.+.++|++||+.++ ..+.++.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 468999999999 99999999999999999999998875 7899999999999999999766 8899999999988
Q ss_pred ccCCCCCCCC---------------------------CCCCcccceEEEeecCCcccHHHHHHHHhhcC-Cceeeeeecc
Q 014397 147 VAGNSGNSTN---------------------------NPVDVSLRKIFVGNVPNDMSADKLLAHFACYG-EIEEGPLGFD 198 (425)
Q Consensus 147 ~~~~~~~~~~---------------------------~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G-~v~~v~i~~d 198 (425)
.......... .....+.++|||+|||+++|+++|+++|++|| .|++|+|+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence 6542211110 01123468899999999999999999999999 9999999764
Q ss_pred CCCCCcceEEEEEeCCHHHHHHHHhcC-CCccC-CeEEEEEEcccC
Q 014397 199 KQTGKPKGFALFVYKTAEGAQAALVDP-IKTVD-GKQLNCRLADNK 242 (425)
Q Consensus 199 ~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~-gr~i~v~~a~~~ 242 (425)
. +|+|||+|.+.++|.+|++.+ +..|+ +++|.|.+++++
T Consensus 157 ~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 D-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp T-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred C-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 2 789999999999999999985 68889 999999998764
No 18
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=3.9e-29 Score=237.96 Aligned_cols=156 Identities=24% Similarity=0.366 Sum_probs=142.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecc
Q 014397 69 TQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAV 147 (425)
Q Consensus 69 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~ 147 (425)
..++|||+|||+++|+++|+++|+.|| |.+|++ ++++|||||+|.+.++|++||+.++ ..+.++.+.|.++.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC
Confidence 457899999999999999999999999 999887 4568899999999999999998877 88999999998853
Q ss_pred cCCCCCCCCCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-C
Q 014397 148 AGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-I 226 (425)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~ 226 (425)
..++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+|++.+ +
T Consensus 94 --------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~ 159 (284)
T 3smz_A 94 --------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLG 159 (284)
T ss_dssp --------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred --------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 2368999999999999999999999999999999999999999999999999999999999775 6
Q ss_pred CccCCeEEEEEEcccCCCC
Q 014397 227 KTVDGKQLNCRLADNKKAK 245 (425)
Q Consensus 227 ~~~~gr~i~v~~a~~~~~~ 245 (425)
..|+++.|.|.++..+...
T Consensus 160 ~~~~g~~i~v~~a~~~~~~ 178 (284)
T 3smz_A 160 KPLGPRTLYVHWTDAGQLT 178 (284)
T ss_dssp CEETTEECEEEECCGGGCC
T ss_pred CEeCCcEEEEEECCCCCCC
Confidence 8999999999999776543
No 19
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=5.6e-29 Score=237.78 Aligned_cols=164 Identities=12% Similarity=0.136 Sum_probs=136.6
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEE
Q 014397 64 ADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVT 143 (425)
Q Consensus 64 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v 143 (425)
...+...++|||+|||+++|+++|+++|+.||+|.+|+|++++.. ++|||||+|.+.++|++||+.....+.++.+.+
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v 112 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAITKTHKVVGQNEIIV 112 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHTTTTCEETTEECEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEE
Confidence 345667899999999999999999999999999999999998633 589999999999999999974448999999999
Q ss_pred EecccCCCCCCCCCCCCcccceEEEeecCCcccHHHHHHHHhhcC-CceeeeeeccCCCCCcceEEEEEeCCHHHHHHHH
Q 014397 144 NLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYG-EIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAAL 222 (425)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G-~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~ 222 (425)
.++. .++|||+|||+++|+++|+++|++|| .|..|.|+.++. ++++|||||+|.+.++|++|+
T Consensus 113 ~~~~---------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~ 176 (292)
T 2ghp_A 113 SHLT---------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCV 176 (292)
T ss_dssp EECC---------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHH
T ss_pred EECC---------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHH
Confidence 8863 47899999999999999999999999 999999998865 889999999999999999999
Q ss_pred hcC-CCccCCeEEEEEEcccCCCC
Q 014397 223 VDP-IKTVDGKQLNCRLADNKKAK 245 (425)
Q Consensus 223 ~~~-~~~~~gr~i~v~~a~~~~~~ 245 (425)
+.+ +..|+++.|.|.++.++...
T Consensus 177 ~~l~g~~~~g~~l~v~~a~~~~~~ 200 (292)
T 2ghp_A 177 EKLNGLKIEGYTLVTKVSNPLEKS 200 (292)
T ss_dssp HHHTTCEETTEECEEEECCCC---
T ss_pred HHhCCCEeCCcEEEEEECCCCccc
Confidence 975 69999999999999766543
No 20
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=7.2e-29 Score=233.39 Aligned_cols=159 Identities=21% Similarity=0.293 Sum_probs=142.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTN 144 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~ 144 (425)
.....++|||+|||+++|+++|+++|+.||.|.+|++.++ +|||||+|.+.++|++||+.++ ..+.++.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 3456688999999999999999999999999999998643 7899999999999999999776 88999999999
Q ss_pred ecccCCCCCCCCCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhc
Q 014397 145 LAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVD 224 (425)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~ 224 (425)
++.. .++|||+|||+.+|+++|+++|++||.|++|.|+.| .+++++|||||+|.+.++|.+||+.
T Consensus 92 ~a~~--------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~ 156 (261)
T 3sde_A 92 FATH--------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALER 156 (261)
T ss_dssp ECCC--------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred eccc--------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 9853 368999999999999999999999999999999999 6899999999999999999999999
Q ss_pred C-C-CccC---CeEEEEEEcccCCCC
Q 014397 225 P-I-KTVD---GKQLNCRLADNKKAK 245 (425)
Q Consensus 225 ~-~-~~~~---gr~i~v~~a~~~~~~ 245 (425)
+ + ..+. +++|.|.++......
T Consensus 157 l~~~~~~~~~~~r~i~v~~~~~~~~~ 182 (261)
T 3sde_A 157 CGDGAFLLTTTPRPVIVEPMEQFDDE 182 (261)
T ss_dssp HHHSCEESSSSCCBCEEEECCCEESS
T ss_pred hcCCeEEecCCCceEEEeeccccCcc
Confidence 6 3 3333 899999999765443
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.91 E-value=2.1e-23 Score=180.94 Aligned_cols=144 Identities=20% Similarity=0.243 Sum_probs=114.1
Q ss_pred EEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC--CCcCCceEE------EEecccCCCCCCCCCCCCcccceEEEee
Q 014397 99 EAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS--KKIDGRVTV------TNLAVAGNSGNSTNNPVDVSLRKIFVGN 170 (425)
Q Consensus 99 ~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~--~~~~gr~~~------v~~~~~~~~~~~~~~~~~~~~~~l~V~n 170 (425)
+++|+.+.. +++||+||+|.+.++|++||+.++ ..+.+.... ...... .............++|||+|
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~v~n 77 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEG--SHHHHHHMDVEGMTSLKVDN 77 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECC--CCCSSCCCCCCBCCEEEEES
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccccccc--ccccccccCCCCCCEEEEeC
Confidence 578888854 699999999999999999998765 222222211 111111 11111223345678999999
Q ss_pred cCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEcccCCCCC
Q 014397 171 VPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLADNKKAKP 246 (425)
Q Consensus 171 L~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a~~~~~~~ 246 (425)
||+++|+++|+++|++||.|++|.|+.|+.+++++|||||+|.+.++|++||+.+ +..|+|+.|.|++++.+..+.
T Consensus 78 l~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 154 (158)
T 2kn4_A 78 LTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 154 (158)
T ss_dssp CCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999986 589999999999998765543
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.88 E-value=1.1e-22 Score=166.75 Aligned_cols=109 Identities=19% Similarity=0.343 Sum_probs=74.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecc
Q 014397 69 TQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAV 147 (425)
Q Consensus 69 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~ 147 (425)
..++|||+|||+++|+++|+++|++||+|++|+|++++ +.++|||||+|.+.++|++||+.++ ..|.++.|.|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 45689999999999999999999999999999999985 4589999999999999999999877 88999999999987
Q ss_pred cCCCCCCCCCCCCcccceEEEeecCCcccHHH
Q 014397 148 AGNSGNSTNNPVDVSLRKIFVGNVPNDMSADK 179 (425)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~ 179 (425)
.+..............++|||+|||+++|++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC----------------------------
T ss_pred CccccccccccccCCCCceEeCCCCCCccccc
Confidence 76554444444455667899999999999874
No 23
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.84 E-value=6e-21 Score=163.97 Aligned_cols=129 Identities=19% Similarity=0.218 Sum_probs=109.4
Q ss_pred CCCcccEEEEEecchHHHHHHHhcC-C-CCcCCceEEEEecccCCC--------CCCCCCCCCcccceEEEeecCCcccH
Q 014397 108 TGKSKGYGFITFKHIDGAMLALKEP-S-KKIDGRVTVTNLAVAGNS--------GNSTNNPVDVSLRKIFVGNVPNDMSA 177 (425)
Q Consensus 108 ~g~skG~aFV~F~~~e~A~~Al~~~-~-~~~~gr~~~v~~~~~~~~--------~~~~~~~~~~~~~~l~V~nL~~~~te 177 (425)
..+.+|+++|+|.+.++|++|++.+ + ..+++ .+.+.++..... ............++|||+|||+++|+
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCH
Confidence 3468999999999999999999988 6 88888 888887754211 11122344556789999999999999
Q ss_pred HHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEcccC
Q 014397 178 DKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLADNK 242 (425)
Q Consensus 178 ~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a~~~ 242 (425)
++|+++|++||.|++|+|+.+ ++|||||+|.+.++|++||+.+ +..|+|++|.|++++++
T Consensus 88 ~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 88 TELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 999999999999999999877 5899999999999999999975 68999999999999765
No 24
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.81 E-value=1.7e-20 Score=188.10 Aligned_cols=162 Identities=19% Similarity=0.289 Sum_probs=111.4
Q ss_pred HHHHHhhcCCeeEEEEee----cC-CCCCcccEE--EEEecchHHHHHHHhcCC-CCcCCceE---------EEEecccC
Q 014397 87 LRSIFSAYGELEEAVVIL----DK-ATGKSKGYG--FITFKHIDGAMLALKEPS-KKIDGRVT---------VTNLAVAG 149 (425)
Q Consensus 87 l~~~F~~~G~i~~v~i~~----~~-~~g~skG~a--FV~F~~~e~A~~Al~~~~-~~~~gr~~---------~v~~~~~~ 149 (425)
|.++|.++++|..|..+. ++ .+....|++ |++|.+.+++..++...+ .....+.. .+......
T Consensus 9 L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~~ 88 (437)
T 3pgw_S 9 LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKM 88 (437)
T ss_pred HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 788999999988874332 21 122233344 788877665554443322 11100000 00000000
Q ss_pred CCCCCCCCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCc
Q 014397 150 NSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKT 228 (425)
Q Consensus 150 ~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~ 228 (425)
..............++|||+|||++||+++|+++|++||.|+.|.|+.++.+++++|||||+|.+.++|++||+.+ +..
T Consensus 89 ~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~ 168 (437)
T 3pgw_S 89 WDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKK 168 (437)
T ss_pred cCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCE
Confidence 0001111223345689999999999999999999999999999999999999999999999999999999999886 599
Q ss_pred cCCeEEEEEEcccCCCCCCC
Q 014397 229 VDGKQLNCRLADNKKAKPMG 248 (425)
Q Consensus 229 ~~gr~i~v~~a~~~~~~~~~ 248 (425)
|+|+.|.|.++..+..+.+.
T Consensus 169 i~gr~i~V~~a~~~~~~~~~ 188 (437)
T 3pgw_S 169 IDGRRVLVDVERGRTVKGWR 188 (437)
T ss_pred ECCEEEEEEEeCCCCCCCCC
Confidence 99999999999877665443
No 25
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.81 E-value=1e-19 Score=144.83 Aligned_cols=82 Identities=29% Similarity=0.433 Sum_probs=76.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEe
Q 014397 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNL 145 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~ 145 (425)
....++|||+|||+++|+++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.++ ..|.++.|.|.+
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4456789999999999999999999999999999999999999999999999999999999999877 899999999999
Q ss_pred ccc
Q 014397 146 AVA 148 (425)
Q Consensus 146 ~~~ 148 (425)
+.+
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 853
No 26
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.81 E-value=9.6e-20 Score=153.46 Aligned_cols=124 Identities=18% Similarity=0.205 Sum_probs=82.8
Q ss_pred EEEEEecchHHHHHHHhcCC-CCcCCceEEEEecccCCCCCCCCCCCCcccceEEEeecCCcccHHHHHHHHhhcCCcee
Q 014397 114 YGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEE 192 (425)
Q Consensus 114 ~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~ 192 (425)
++|++|++...+.+|++.++ ....++.. .. ....+......++|||+|||+++|+++|+++|++||.|++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~--------~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~ 76 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGS-MS--------YGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGD 76 (135)
T ss_dssp ------------------------------CC--------SCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSE
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCC-CC--------cCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE
Confidence 67888999999999998877 33333321 11 1112345566789999999999999999999999999999
Q ss_pred eeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEcccCCCCC
Q 014397 193 GPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLADNKKAKP 246 (425)
Q Consensus 193 v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a~~~~~~~ 246 (425)
|.|+.++.+++++|||||+|.+.++|++||+.+ +..|++++|.|++++.+....
T Consensus 77 v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 77 VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 131 (135)
T ss_dssp EECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCT
T ss_pred EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCc
Confidence 999999999999999999999999999999986 588999999999998765443
No 27
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.80 E-value=9.2e-20 Score=145.06 Aligned_cols=80 Identities=26% Similarity=0.390 Sum_probs=75.9
Q ss_pred ccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEcc
Q 014397 162 SLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLAD 240 (425)
Q Consensus 162 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a~ 240 (425)
+.++|||+|||+++|+++|+++|++||+|++|+|++|+.+++++|||||+|.++++|++||+.+ +..|+|++|.|++|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 4578999999999999999999999999999999999999999999999999999999999985 699999999999996
Q ss_pred c
Q 014397 241 N 241 (425)
Q Consensus 241 ~ 241 (425)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 5
No 28
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.80 E-value=1.1e-19 Score=142.32 Aligned_cols=82 Identities=17% Similarity=0.303 Sum_probs=76.1
Q ss_pred cceEEEeecCCcccHHHHHHHHhhcC-CceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-C-CccCCeEEEEEEc
Q 014397 163 LRKIFVGNVPNDMSADKLLAHFACYG-EIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-I-KTVDGKQLNCRLA 239 (425)
Q Consensus 163 ~~~l~V~nL~~~~te~~L~~~F~~~G-~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~-~~~~gr~i~v~~a 239 (425)
+++|||+|||+++|+++|+++|++|| +|++|+|++|+.+++++|||||+|.++++|++||+.+ + ..|+|++|.|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 8999999999999999999999999999999999886 4 5799999999999
Q ss_pred ccCCC
Q 014397 240 DNKKA 244 (425)
Q Consensus 240 ~~~~~ 244 (425)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87654
No 29
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.4e-18 Score=142.36 Aligned_cols=87 Identities=32% Similarity=0.517 Sum_probs=80.5
Q ss_pred CCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEE
Q 014397 157 NPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNC 236 (425)
Q Consensus 157 ~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v 236 (425)
.......++|||+|||+++|+++|+++|++||.|++|+|+.++.+++++|||||+|.++++|++||+.++..|+++.|.|
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V 90 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANV 90 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEE
Confidence 34456678999999999999999999999999999999999999999999999999999999999999877999999999
Q ss_pred EEcccCC
Q 014397 237 RLADNKK 243 (425)
Q Consensus 237 ~~a~~~~ 243 (425)
+++..+.
T Consensus 91 ~~a~~~~ 97 (116)
T 2cqd_A 91 NLAYLGA 97 (116)
T ss_dssp EESTTTC
T ss_pred EEcccCC
Confidence 9997653
No 30
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.79 E-value=1.5e-19 Score=141.47 Aligned_cols=81 Identities=20% Similarity=0.372 Sum_probs=75.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC--CCcCCceEEEEec
Q 014397 70 QRKLFIRGLGWDTTTEGLRSIFSAYG-ELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS--KKIDGRVTVTNLA 146 (425)
Q Consensus 70 ~~~lfV~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~--~~~~gr~~~v~~~ 146 (425)
+++|||+|||+++||++|+++|++|| +|++|+|++|+.+++++|||||+|.+.++|++||+.++ ..+.|+.|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47899999999999999999999999 89999999999999999999999999999999998764 5689999999998
Q ss_pred ccCC
Q 014397 147 VAGN 150 (425)
Q Consensus 147 ~~~~ 150 (425)
.++.
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 7654
No 31
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.78 E-value=2e-19 Score=141.73 Aligned_cols=82 Identities=23% Similarity=0.328 Sum_probs=74.6
Q ss_pred CcccceEEEeecCCcccHHHHHHHHhhcCC--ceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCC-C----ccCCe
Q 014397 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGE--IEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPI-K----TVDGK 232 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~--v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~-~----~~~gr 232 (425)
.....+|||+|||+++|+++|+++|++||. |.+|+|++|+.++++||||||+|.+.++|++||+.++ . .|+||
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 445689999999999999999999999995 6799999999999999999999999999999999863 2 59999
Q ss_pred EEEEEEccc
Q 014397 233 QLNCRLADN 241 (425)
Q Consensus 233 ~i~v~~a~~ 241 (425)
+|.|++|+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999874
No 32
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=9.1e-19 Score=139.24 Aligned_cols=89 Identities=21% Similarity=0.462 Sum_probs=81.2
Q ss_pred CCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEEE
Q 014397 159 VDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRL 238 (425)
Q Consensus 159 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~~ 238 (425)
.....++|||+|||+++|+++|+++|++||.|++|.|+.++.+++++|||||+|++.++|++||+.+...|+++.|.|++
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 85 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34566899999999999999999999999999999999999999999999999999999999999556899999999999
Q ss_pred cccCCCCCC
Q 014397 239 ADNKKAKPM 247 (425)
Q Consensus 239 a~~~~~~~~ 247 (425)
+.++..+..
T Consensus 86 a~~~~~~~~ 94 (99)
T 2dgs_A 86 AEPRDSKSS 94 (99)
T ss_dssp CCCCCCCCC
T ss_pred CCCCcccCC
Confidence 988766543
No 33
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-18 Score=137.70 Aligned_cols=86 Identities=28% Similarity=0.381 Sum_probs=79.8
Q ss_pred cccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEc
Q 014397 161 VSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLA 239 (425)
Q Consensus 161 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a 239 (425)
...++|||+|||+++|+++|+++|++||.|++|.|+.++.+++++|||||+|.+.++|++||+.+ +..|++++|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45689999999999999999999999999999999999989999999999999999999999876 58999999999999
Q ss_pred ccCCCCC
Q 014397 240 DNKKAKP 246 (425)
Q Consensus 240 ~~~~~~~ 246 (425)
+.+..+.
T Consensus 86 ~~~~~~~ 92 (99)
T 1whw_A 86 TIKKEAS 92 (99)
T ss_dssp CCCSTTC
T ss_pred CCCcccc
Confidence 8876643
No 34
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.78 E-value=5.7e-19 Score=143.19 Aligned_cols=82 Identities=20% Similarity=0.344 Sum_probs=77.1
Q ss_pred ccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEcc
Q 014397 162 SLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLAD 240 (425)
Q Consensus 162 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a~ 240 (425)
+.++|||+||++++|+++|+++|++||.|++|+|++|+.|++++|||||+|++.++|++||+.+ +..|+|+.|.|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 4579999999999999999999999999999999999999999999999999999999999985 599999999999997
Q ss_pred cCC
Q 014397 241 NKK 243 (425)
Q Consensus 241 ~~~ 243 (425)
...
T Consensus 85 ~~~ 87 (110)
T 3s8s_A 85 KGQ 87 (110)
T ss_dssp TTH
T ss_pred CCc
Confidence 553
No 35
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.78 E-value=9.6e-19 Score=151.12 Aligned_cols=85 Identities=19% Similarity=0.279 Sum_probs=79.2
Q ss_pred cccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEc
Q 014397 161 VSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLA 239 (425)
Q Consensus 161 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a 239 (425)
...++|||+|||+++|+++|+++|++||+|++|.|+.++.++++++||||+|+++++|++||+.+ +..|++++|.|+++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999999999999999999999999999999986 58999999999999
Q ss_pred ccCCCC
Q 014397 240 DNKKAK 245 (425)
Q Consensus 240 ~~~~~~ 245 (425)
+.....
T Consensus 117 ~~~~~~ 122 (156)
T 1h2v_Z 117 AGFKEG 122 (156)
T ss_dssp SCCCTT
T ss_pred CCCCCc
Confidence 875543
No 36
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.78 E-value=7.5e-19 Score=142.48 Aligned_cols=82 Identities=21% Similarity=0.312 Sum_probs=77.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEe
Q 014397 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNL 145 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~ 145 (425)
+.+.++|||+|||+++|+++|+++|++||+|++|+|++|+.|++++|||||+|.+.++|++||+.++ ..+.++.|.|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3467899999999999999999999999999999999999999999999999999999999999888 889999999999
Q ss_pred ccc
Q 014397 146 AVA 148 (425)
Q Consensus 146 ~~~ 148 (425)
+..
T Consensus 83 a~~ 85 (110)
T 3s8s_A 83 DIK 85 (110)
T ss_dssp CST
T ss_pred CCC
Confidence 854
No 37
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.77 E-value=1.7e-18 Score=141.70 Aligned_cols=90 Identities=23% Similarity=0.321 Sum_probs=81.7
Q ss_pred CCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEE
Q 014397 158 PVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNC 236 (425)
Q Consensus 158 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v 236 (425)
......++|||+|||+++|+++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+.+ +..|++++|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456689999999999999999999999999999999999999999999999999999999999885 68999999999
Q ss_pred EEcccCCCCCC
Q 014397 237 RLADNKKAKPM 247 (425)
Q Consensus 237 ~~a~~~~~~~~ 247 (425)
++++++..+..
T Consensus 100 ~~a~~~~~~~~ 110 (115)
T 2cpz_A 100 QLKRSKNDSKS 110 (115)
T ss_dssp ECCCCSCCCCC
T ss_pred EEcCCCCcCCC
Confidence 99987766543
No 38
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.8e-18 Score=136.55 Aligned_cols=85 Identities=22% Similarity=0.375 Sum_probs=79.0
Q ss_pred ccceEEEeecCCcccHHHHHHHHhhcCCceee-eeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEc
Q 014397 162 SLRKIFVGNVPNDMSADKLLAHFACYGEIEEG-PLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLA 239 (425)
Q Consensus 162 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v-~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a 239 (425)
..++|||+|||+++|+++|+++|++||.|.+| .|+.|+.+++++|||||+|+++++|++||+.+ +..|+++.|.|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45899999999999999999999999999999 99999999999999999999999999999986 58899999999999
Q ss_pred ccCCCCC
Q 014397 240 DNKKAKP 246 (425)
Q Consensus 240 ~~~~~~~ 246 (425)
.++..+.
T Consensus 84 ~~~~~~~ 90 (96)
T 1x5t_A 84 FKKDSKG 90 (96)
T ss_dssp CCCCCCC
T ss_pred cccCCCC
Confidence 8766543
No 39
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=136.87 Aligned_cols=84 Identities=21% Similarity=0.366 Sum_probs=78.4
Q ss_pred ccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEcc
Q 014397 162 SLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLAD 240 (425)
Q Consensus 162 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a~ 240 (425)
..++|||+|||+++|+++|+++|++||.|++|.|+.++.+++++|||||+|++.++|++||+.+ +..|++++|.|++++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 4589999999999999999999999999999999999999999999999999999999999975 689999999999998
Q ss_pred cCCCC
Q 014397 241 NKKAK 245 (425)
Q Consensus 241 ~~~~~ 245 (425)
.+...
T Consensus 84 ~~~~~ 88 (95)
T 2dnz_A 84 ERLDG 88 (95)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 76553
No 40
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.3e-18 Score=139.02 Aligned_cols=88 Identities=26% Similarity=0.429 Sum_probs=81.1
Q ss_pred CcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEE
Q 014397 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRL 238 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~ 238 (425)
..+.++|||+|||+++|+++|+++|++||.|++|.|+.++.+++++|||||+|.+.++|++||+.+ +..|++++|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 345689999999999999999999999999999999999999999999999999999999999875 6899999999999
Q ss_pred cccCCCCCC
Q 014397 239 ADNKKAKPM 247 (425)
Q Consensus 239 a~~~~~~~~ 247 (425)
++++..+..
T Consensus 89 a~~~~~~~~ 97 (102)
T 2cqb_A 89 AKPMRIKES 97 (102)
T ss_dssp CCCCCCCCC
T ss_pred CCCCCCCCC
Confidence 988766554
No 41
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.8e-18 Score=141.75 Aligned_cols=88 Identities=16% Similarity=0.375 Sum_probs=81.1
Q ss_pred CCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEEE
Q 014397 159 VDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRL 238 (425)
Q Consensus 159 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~~ 238 (425)
.....++|||+|||+++|+++|+++|++||.|++|.|+.++.+++++|||||+|.+.++|++||+.+...|+|+.|.|++
T Consensus 23 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 23 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEEC
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEE
Confidence 34556899999999999999999999999999999999999999999999999999999999999966899999999999
Q ss_pred cccCCCCC
Q 014397 239 ADNKKAKP 246 (425)
Q Consensus 239 a~~~~~~~ 246 (425)
+.++....
T Consensus 103 a~~~~~~~ 110 (116)
T 1x4b_A 103 AVAREESG 110 (116)
T ss_dssp CSSCCCCC
T ss_pred CCCCccCC
Confidence 98776543
No 42
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.8e-18 Score=137.68 Aligned_cols=89 Identities=19% Similarity=0.291 Sum_probs=79.9
Q ss_pred CCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCC-CCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEE
Q 014397 158 PVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQT-GKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNC 236 (425)
Q Consensus 158 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~-g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v 236 (425)
......++|||+|||+++|+++|+++|++|| |++|.|+.++.+ ++++|||||+|.+.++|++||..++..|+++.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRV 88 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEE
Confidence 3445668999999999999999999999999 999999999888 99999999999999999999933468999999999
Q ss_pred EEcccCCCCCC
Q 014397 237 RLADNKKAKPM 247 (425)
Q Consensus 237 ~~a~~~~~~~~ 247 (425)
++++.+..+.+
T Consensus 89 ~~a~~~~~~~~ 99 (104)
T 1wi8_A 89 DVADQAQDKDS 99 (104)
T ss_dssp EECCCCCCCCC
T ss_pred EEccCCCCCCC
Confidence 99988766553
No 43
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.6e-18 Score=138.07 Aligned_cols=89 Identities=18% Similarity=0.259 Sum_probs=81.4
Q ss_pred CCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEE
Q 014397 158 PVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNC 236 (425)
Q Consensus 158 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v 236 (425)
......++|||+|||+++|+++|+++|++||.|++|.|+.++.+++++|||||+|.+.++|++||+.+ +..|+++.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 44556789999999999999999999999999999999999999999999999999999999999986 58999999999
Q ss_pred EEcccCCCCC
Q 014397 237 RLADNKKAKP 246 (425)
Q Consensus 237 ~~a~~~~~~~ 246 (425)
.+++.+..+.
T Consensus 90 ~~a~~~~~~~ 99 (105)
T 1x5u_A 90 NKASAHNKNL 99 (105)
T ss_dssp EETTTTSCCC
T ss_pred EECCCCCcCC
Confidence 9998765543
No 44
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.77 E-value=1.9e-19 Score=151.76 Aligned_cols=125 Identities=14% Similarity=0.123 Sum_probs=73.8
Q ss_pred ccEEEEEecchHHHHHHHhcCCCCcCCceEEEEecccCCCCCCCCCCCCcccceEEEeecCCcccHHHHHHHHhhcCCce
Q 014397 112 KGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE 191 (425)
Q Consensus 112 kG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~ 191 (425)
+++||.+|..++.+..++......+.+...--... ...........++|||+|||+++|+++|+++|++|| |+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~g~~~g------~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~ 73 (139)
T 2hgn_A 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSG------DSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PV 73 (139)
T ss_dssp --------------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CS
T ss_pred CCcccccccCccccchhcccchhccCCCCCCCCCC------CcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-Ce
Confidence 35788999988888777776654444432211110 011122334568999999999999999999999999 77
Q ss_pred eeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEEEcccCCC
Q 014397 192 EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKA 244 (425)
Q Consensus 192 ~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~~a~~~~~ 244 (425)
+|+|++|+. ++++|||||+|+++++|++||+.+...|++|.|+|.+++.+..
T Consensus 74 ~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 74 RVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp EEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCCSCC
T ss_pred EEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCCCCC
Confidence 999999975 9999999999999999999995557899999999999876543
No 45
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.77 E-value=2.9e-18 Score=145.06 Aligned_cols=89 Identities=25% Similarity=0.424 Sum_probs=81.5
Q ss_pred CCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEE
Q 014397 158 PVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNC 236 (425)
Q Consensus 158 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v 236 (425)
......++|||+|||+++|+++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+.+ +..|+++.|.|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999986 58999999999
Q ss_pred EEcccCCCCC
Q 014397 237 RLADNKKAKP 246 (425)
Q Consensus 237 ~~a~~~~~~~ 246 (425)
++++.+..+.
T Consensus 117 ~~a~~~~~~~ 126 (139)
T 1u6f_A 117 ALAASGHQRP 126 (139)
T ss_dssp EESSCCCCCC
T ss_pred EECCCCCCCC
Confidence 9998876554
No 46
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.77 E-value=8.5e-19 Score=152.96 Aligned_cols=130 Identities=22% Similarity=0.240 Sum_probs=79.0
Q ss_pred EEecchHHHHHHHhcCC-CCc--CCceEEEEecccCCC------------CCCCCCCCCcccceEEEeecCCcccHHHHH
Q 014397 117 ITFKHIDGAMLALKEPS-KKI--DGRVTVTNLAVAGNS------------GNSTNNPVDVSLRKIFVGNVPNDMSADKLL 181 (425)
Q Consensus 117 V~F~~~e~A~~Al~~~~-~~~--~gr~~~v~~~~~~~~------------~~~~~~~~~~~~~~l~V~nL~~~~te~~L~ 181 (425)
.+|++.++|+.|+..+. ... .++.+...+...... .....+......++|||+|||+++|+++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 68889999999988877 322 244444443221110 011122334556789999999999999999
Q ss_pred HHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEcccCCCCC
Q 014397 182 AHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLADNKKAKP 246 (425)
Q Consensus 182 ~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a~~~~~~~ 246 (425)
++|++||.|+.|.|+.++.+++++|||||+|.+.++|++||+.+ +..|+|+.|.|.++..+..+.
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 99999999999999999999999999999999999999999985 689999999999998765543
No 47
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.5e-18 Score=138.76 Aligned_cols=87 Identities=26% Similarity=0.445 Sum_probs=80.1
Q ss_pred CcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEE
Q 014397 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRL 238 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~ 238 (425)
..+.++|||+|||+++|+++|+++|++||.|++|.|+.++.+++++|||||+|.++++|++||+.+ +..|++++|.|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 445689999999999999999999999999999999999999999999999999999999999885 6899999999999
Q ss_pred cccCCCCC
Q 014397 239 ADNKKAKP 246 (425)
Q Consensus 239 a~~~~~~~ 246 (425)
++.+....
T Consensus 89 a~~~~~~~ 96 (102)
T 1x5s_A 89 AGKSSDNR 96 (102)
T ss_dssp EECCCCCC
T ss_pred CCCCCCCC
Confidence 98776544
No 48
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1e-18 Score=139.94 Aligned_cols=89 Identities=24% Similarity=0.325 Sum_probs=81.2
Q ss_pred CCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEE
Q 014397 158 PVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNC 236 (425)
Q Consensus 158 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v 236 (425)
......++|||+|||+++|+++|+++|++||.|++|.|+.++.+++++|||||+|.+.++|++||+.+ +..|+++.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999975 68999999999
Q ss_pred EEcccCCCCC
Q 014397 237 RLADNKKAKP 246 (425)
Q Consensus 237 ~~a~~~~~~~ 246 (425)
++++.+....
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2dnm_A 88 QVARYGRRDL 97 (103)
T ss_dssp EECSSCCSCC
T ss_pred EECCcCCCCC
Confidence 9998765544
No 49
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.76 E-value=3.2e-19 Score=163.80 Aligned_cols=81 Identities=16% Similarity=0.223 Sum_probs=75.5
Q ss_pred ccceEEEeecCCcccHHHHHHHHhhcC--CceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEE
Q 014397 162 SLRKIFVGNVPNDMSADKLLAHFACYG--EIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRL 238 (425)
Q Consensus 162 ~~~~l~V~nL~~~~te~~L~~~F~~~G--~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~ 238 (425)
..++|||+||++++|+++|+++|++|| .|++|+|++|+.++++||||||+|++.++|++||+.+ .+.|+++.|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 457899999999999999999999999 9999999999999999999999999999999999986 5999999999999
Q ss_pred cccC
Q 014397 239 ADNK 242 (425)
Q Consensus 239 a~~~ 242 (425)
++.+
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8654
No 50
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.76 E-value=8e-18 Score=137.55 Aligned_cols=90 Identities=23% Similarity=0.392 Sum_probs=82.0
Q ss_pred CCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEE
Q 014397 158 PVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNC 236 (425)
Q Consensus 158 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v 236 (425)
......++|||+|||+++|+++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+.+ +..|+++.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999986 58999999999
Q ss_pred EEcccCCCCCC
Q 014397 237 RLADNKKAKPM 247 (425)
Q Consensus 237 ~~a~~~~~~~~ 247 (425)
.+++.+.....
T Consensus 90 ~~a~~~~~~~~ 100 (115)
T 2dgo_A 90 NWATRKPPAPK 100 (115)
T ss_dssp EESSCCCCCSC
T ss_pred EEccCCCCCCc
Confidence 99987765543
No 51
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.76 E-value=1.9e-18 Score=133.93 Aligned_cols=81 Identities=26% Similarity=0.494 Sum_probs=76.2
Q ss_pred CCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEEE
Q 014397 159 VDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRL 238 (425)
Q Consensus 159 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~~ 238 (425)
.....++|||+|||+++|+++|+++|++||.|++|.|+.++.+++++|||||+|.+.++|++||+.++..|+|+.|.|++
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK 86 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34566899999999999999999999999999999999999999999999999999999999998888889999999987
Q ss_pred c
Q 014397 239 A 239 (425)
Q Consensus 239 a 239 (425)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 52
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.9e-18 Score=138.22 Aligned_cols=91 Identities=23% Similarity=0.345 Sum_probs=82.5
Q ss_pred CCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeecc-CCCCCcceEEEEEeCCHHHHHHHHhcC--CCccCCeE
Q 014397 157 NPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFD-KQTGKPKGFALFVYKTAEGAQAALVDP--IKTVDGKQ 233 (425)
Q Consensus 157 ~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d-~~~g~~kG~afV~F~~~~~A~~A~~~~--~~~~~gr~ 233 (425)
.......++|||+|||+++|+++|+++|++||.|++|.|+.+ +.+++++|||||+|.+.++|++||+.+ ...|+++.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 344566789999999999999999999999999999999999 789999999999999999999999986 58999999
Q ss_pred EEEEEcccCCCCCC
Q 014397 234 LNCRLADNKKAKPM 247 (425)
Q Consensus 234 i~v~~a~~~~~~~~ 247 (425)
|.|++++.+.....
T Consensus 89 l~v~~a~~~~~~~~ 102 (107)
T 2cph_A 89 LVLEWADSEVTVQS 102 (107)
T ss_dssp CEEEECCCCCCCCC
T ss_pred EEEEeCCCCCCCCC
Confidence 99999988766543
No 53
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.2e-18 Score=140.07 Aligned_cols=89 Identities=22% Similarity=0.417 Sum_probs=82.1
Q ss_pred CCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEE
Q 014397 158 PVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCR 237 (425)
Q Consensus 158 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~ 237 (425)
......++|||+|||+++|+++|+++|++||+|++|.|+.++.+++++|||||+|+++++|++||+.+...|+++.|.|+
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPK 90 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999996689999999999
Q ss_pred EcccCCCCC
Q 014397 238 LADNKKAKP 246 (425)
Q Consensus 238 ~a~~~~~~~ 246 (425)
++.++...+
T Consensus 91 ~a~~~~~~~ 99 (105)
T 2dh8_A 91 PCTPRGMQP 99 (105)
T ss_dssp CSCCSSCCT
T ss_pred EccCCCCCC
Confidence 998776654
No 54
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.5e-18 Score=137.71 Aligned_cols=88 Identities=27% Similarity=0.271 Sum_probs=80.9
Q ss_pred CCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEE
Q 014397 159 VDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCR 237 (425)
Q Consensus 159 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~ 237 (425)
.....++|||+|||+++|+++|+++|++||.|++|.|+.++.+++++|||||+|.+.++|++||+.+ +..|+++.|.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 4456789999999999999999999999999999999999999999999999999999999999986 589999999999
Q ss_pred EcccCCCCC
Q 014397 238 LADNKKAKP 246 (425)
Q Consensus 238 ~a~~~~~~~ 246 (425)
+++++..+.
T Consensus 91 ~a~~~~~~~ 99 (103)
T 2cq0_A 91 WAKPSTNSG 99 (103)
T ss_dssp ESSCCCCSC
T ss_pred ECCCCCCCC
Confidence 998765543
No 55
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=4.7e-18 Score=136.14 Aligned_cols=88 Identities=23% Similarity=0.272 Sum_probs=79.2
Q ss_pred CCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEE
Q 014397 158 PVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCR 237 (425)
Q Consensus 158 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~ 237 (425)
......++|||+|||+++|+++|+++|++|+ |++|.|+.++.+++++|||||+|++.++|++||+.++..|+++.|.|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVD 88 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEE
Confidence 3445678999999999999999999999996 999999999999999999999999999999999445699999999999
Q ss_pred EcccCCCCC
Q 014397 238 LADNKKAKP 246 (425)
Q Consensus 238 ~a~~~~~~~ 246 (425)
+++.+..+.
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2dng_A 89 IAEGRKQDK 97 (103)
T ss_dssp ECCCCCCCC
T ss_pred EecCCCCCC
Confidence 998766544
No 56
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.2e-18 Score=135.85 Aligned_cols=88 Identities=20% Similarity=0.377 Sum_probs=80.2
Q ss_pred CCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEE
Q 014397 158 PVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCR 237 (425)
Q Consensus 158 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~ 237 (425)
......++|||+|||+++|+++|+++|++||.|++|.|+.++.+++++|||||+|.+.++|++||+. .+.|+|+.|.|+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~v~ 88 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEEEE
Confidence 3445668999999999999999999999999999999999999999999999999999999999995 678999999999
Q ss_pred EcccCCCCC
Q 014397 238 LADNKKAKP 246 (425)
Q Consensus 238 ~a~~~~~~~ 246 (425)
++..+....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2cqg_A 89 LPNSKQSQD 97 (103)
T ss_dssp CCCTTCCCC
T ss_pred ecCCCCcCC
Confidence 998876543
No 57
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.76 E-value=2.2e-18 Score=139.66 Aligned_cols=88 Identities=23% Similarity=0.419 Sum_probs=79.0
Q ss_pred CCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEEE
Q 014397 159 VDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRL 238 (425)
Q Consensus 159 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~~ 238 (425)
.....++|||+|||+++|+++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+.++..|+|+.|.|++
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKV 100 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEE
Confidence 34556899999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred cccCCCCC
Q 014397 239 ADNKKAKP 246 (425)
Q Consensus 239 a~~~~~~~ 246 (425)
+.++..++
T Consensus 101 a~~~~~~~ 108 (109)
T 2rs2_A 101 AFPRRAQP 108 (109)
T ss_dssp CCCCCCCC
T ss_pred ccCCCCCC
Confidence 98776543
No 58
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=3.9e-18 Score=138.48 Aligned_cols=89 Identities=22% Similarity=0.298 Sum_probs=81.3
Q ss_pred CCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-------CCccC
Q 014397 158 PVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-------IKTVD 230 (425)
Q Consensus 158 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-------~~~~~ 230 (425)
......++|||+|||+++|+++|+++|++||.|++|.|+.|+.+++++|||||+|.+.++|++||+.+ ...|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 34456789999999999999999999999999999999999999999999999999999999999985 67899
Q ss_pred CeEEEEEEcccCCCCC
Q 014397 231 GKQLNCRLADNKKAKP 246 (425)
Q Consensus 231 gr~i~v~~a~~~~~~~ 246 (425)
|+.|.|.++.++....
T Consensus 90 g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEAA 105 (111)
T ss_dssp SCEEEEECCCCCCCCC
T ss_pred CEEEEEEECCCCccCC
Confidence 9999999998776544
No 59
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.76 E-value=2.8e-18 Score=138.13 Aligned_cols=90 Identities=24% Similarity=0.328 Sum_probs=80.7
Q ss_pred CCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCcc---CCeE
Q 014397 158 PVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTV---DGKQ 233 (425)
Q Consensus 158 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~---~gr~ 233 (425)
......++|||+|||+++|+++|+++|++||.|++|+|+.|+.+++++|||||+|.+.++|++||+.+ +..+ +++.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 34456789999999999999999999999999999999999999999999999999999999999985 4666 8899
Q ss_pred EEEEEcccCCCCCC
Q 014397 234 LNCRLADNKKAKPM 247 (425)
Q Consensus 234 i~v~~a~~~~~~~~ 247 (425)
|.|++++.+..+..
T Consensus 88 l~v~~a~~~~~~~~ 101 (106)
T 2dgp_A 88 IQVKPADSESRGGS 101 (106)
T ss_dssp CEEEECCCCSCCCC
T ss_pred EEEEECCcccccCC
Confidence 99999988765543
No 60
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.76 E-value=6.9e-19 Score=138.62 Aligned_cols=82 Identities=21% Similarity=0.368 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCC--eeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCC-----CcCCc
Q 014397 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGE--LEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSK-----KIDGR 139 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~--i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~-----~~~gr 139 (425)
...-+||||+|||+++|+++|+++|++||. |.+|++++|+.++++||||||+|.+.++|++||+.++. .++||
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 445678999999999999999999999995 67999999999999999999999999999999998773 48999
Q ss_pred eEEEEeccc
Q 014397 140 VTVTNLAVA 148 (425)
Q Consensus 140 ~~~v~~~~~ 148 (425)
.|.|.++..
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999853
No 61
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.76 E-value=3.7e-18 Score=132.27 Aligned_cols=82 Identities=33% Similarity=0.699 Sum_probs=76.2
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEE
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTN 144 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~ 144 (425)
..+...++|||+|||+++|+++|+++|++||+|.+|+++.++.+++++|||||+|.+.++|++||+.++..+.++.|.|+
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPK 85 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567789999999999999999999999999999999999989999999999999999999999987788999999998
Q ss_pred ec
Q 014397 145 LA 146 (425)
Q Consensus 145 ~~ 146 (425)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 74
No 62
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.5e-18 Score=138.77 Aligned_cols=88 Identities=45% Similarity=0.725 Sum_probs=81.5
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEE
Q 014397 64 ADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVT 143 (425)
Q Consensus 64 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v 143 (425)
...+...++|||+|||+++|+++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+.++..|.++.|.|
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V 90 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANV 90 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEE
Confidence 34566789999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred EecccCCC
Q 014397 144 NLAVAGNS 151 (425)
Q Consensus 144 ~~~~~~~~ 151 (425)
.++.....
T Consensus 91 ~~a~~~~~ 98 (116)
T 2cqd_A 91 NLAYLGAK 98 (116)
T ss_dssp EESTTTCC
T ss_pred EEcccCCC
Confidence 99976543
No 63
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=2.1e-18 Score=137.64 Aligned_cols=97 Identities=23% Similarity=0.340 Sum_probs=83.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecccC
Q 014397 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAVAG 149 (425)
Q Consensus 71 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~~~ 149 (425)
++|||+|||+++|+++|+++|++||+|++|+++.+ ++|||||+|.+.++|++||+.++ ..+.++.|.|.++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999877 78999999999999999999877 8899999999999876
Q ss_pred CCCCCCCCC--CCcccceEEEeecC
Q 014397 150 NSGNSTNNP--VDVSLRKIFVGNVP 172 (425)
Q Consensus 150 ~~~~~~~~~--~~~~~~~l~V~nL~ 172 (425)
......... ......+|||++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCC
Confidence 644333222 22346789999996
No 64
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.5e-18 Score=139.27 Aligned_cols=89 Identities=29% Similarity=0.343 Sum_probs=81.1
Q ss_pred CCCcccceEEEeecCCcccHHHHHHHHhhcCCce--------eeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCc
Q 014397 158 PVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIE--------EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKT 228 (425)
Q Consensus 158 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~--------~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~ 228 (425)
......++|||+|||+++|+++|+++|++||.|+ .|+|+.++.+++++|||||+|.+.++|++||+.+ +..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3455678999999999999999999999999999 7999999999999999999999999999999985 689
Q ss_pred cCCeEEEEEEcccCCCCC
Q 014397 229 VDGKQLNCRLADNKKAKP 246 (425)
Q Consensus 229 ~~gr~i~v~~a~~~~~~~ 246 (425)
|+++.|.|++++.+....
T Consensus 90 ~~g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPPMN 107 (113)
T ss_dssp ETTEECEEECSSCCCCST
T ss_pred cCCCEEEEEECCCCCCCC
Confidence 999999999998776543
No 65
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=4e-18 Score=136.51 Aligned_cols=89 Identities=21% Similarity=0.407 Sum_probs=80.7
Q ss_pred CCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEE
Q 014397 157 NPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLN 235 (425)
Q Consensus 157 ~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~ 235 (425)
.......++|||+|||+++|+++|+++|++||.|++|.|+.+ ++++++||||+|.+.++|++||+.+ +..|+++.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 9 RITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp CCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 344557789999999999999999999999999999999988 8999999999999999999999985 6899999999
Q ss_pred EEEcccCCCCCC
Q 014397 236 CRLADNKKAKPM 247 (425)
Q Consensus 236 v~~a~~~~~~~~ 247 (425)
|++++.+..+..
T Consensus 87 V~~a~~~~~~~~ 98 (103)
T 2d9p_A 87 VALAQRKEERQS 98 (103)
T ss_dssp EEECSSCCCCCC
T ss_pred EEEecccccCCC
Confidence 999988776554
No 66
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=6.1e-18 Score=134.36 Aligned_cols=87 Identities=30% Similarity=0.486 Sum_probs=80.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTN 144 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~ 144 (425)
.....++|||+|||+++|+++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+.++ ..|.++.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999998887 88999999999
Q ss_pred ecccCCCC
Q 014397 145 LAVAGNSG 152 (425)
Q Consensus 145 ~~~~~~~~ 152 (425)
++......
T Consensus 84 ~a~~~~~~ 91 (99)
T 1whw_A 84 PSTIKKEA 91 (99)
T ss_dssp ECCCCSTT
T ss_pred EcCCCccc
Confidence 99876543
No 67
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.75 E-value=1.2e-18 Score=150.79 Aligned_cols=136 Identities=19% Similarity=0.253 Sum_probs=102.0
Q ss_pred ccCCCCCCCCChHHHHHHHHhhchhhHHHHHH----HhhhccchhhhhhhhcccCCCCCCeEEEcCCCCCCCHHHHHHHH
Q 014397 16 LSDLESPNRLTPQDARKIVERLTSDQLLDVLS----SAVARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIF 91 (425)
Q Consensus 16 ~~~~~~~~~~~~e~~~~~~e~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F 91 (425)
......+++.+.++|+++++.++.....+... .......................++|||+|||+++|+++|+++|
T Consensus 12 ~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F 91 (158)
T 2kn4_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRVF 91 (158)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHHH
T ss_pred ccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 44456688999999999998876533211000 00000000001111122334557899999999999999999999
Q ss_pred hhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecccCCC
Q 014397 92 SAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAVAGNS 151 (425)
Q Consensus 92 ~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~~~~~ 151 (425)
+.||+|++|+|+.++.+++++|||||+|.+.++|++||+.++ ..|.++.|.|.++.....
T Consensus 92 ~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 92 EKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp HHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred HhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 999999999999998899999999999999999999999877 889999999999976543
No 68
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.1e-18 Score=135.83 Aligned_cols=85 Identities=26% Similarity=0.367 Sum_probs=77.9
Q ss_pred ccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCC---CCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEE
Q 014397 162 SLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQ---TGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCR 237 (425)
Q Consensus 162 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~---~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~ 237 (425)
+.++|||+|||+++|+++|+++|++||.|++|.|+.++. +++++|||||+|.+.++|++||+.+ +..|++++|.|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 458999999999999999999999999999999999876 6689999999999999999999986 589999999999
Q ss_pred EcccCCCCC
Q 014397 238 LADNKKAKP 246 (425)
Q Consensus 238 ~a~~~~~~~ 246 (425)
+++.+....
T Consensus 84 ~a~~~~~~~ 92 (98)
T 2cpf_A 84 ISERATKPA 92 (98)
T ss_dssp CSSCSSCCC
T ss_pred EccCCCCCC
Confidence 998766544
No 69
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.5e-18 Score=137.55 Aligned_cols=87 Identities=28% Similarity=0.386 Sum_probs=79.9
Q ss_pred CCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEE
Q 014397 158 PVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNC 236 (425)
Q Consensus 158 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v 236 (425)
......++|||+|||+++|+++|+++|++||.|++|.|+.++.+++++|||||+|.+.++|++||+.+ +..|+|+.|.|
T Consensus 18 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 18 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp CCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 34456689999999999999999999999999999999999999999999999999999999999975 68999999999
Q ss_pred EEcccCCC
Q 014397 237 RLADNKKA 244 (425)
Q Consensus 237 ~~a~~~~~ 244 (425)
+++..+..
T Consensus 98 ~~a~~~~~ 105 (106)
T 1p27_B 98 DWCFVRGP 105 (106)
T ss_dssp EESEESSC
T ss_pred EeecCCCC
Confidence 99987643
No 70
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.75 E-value=2.9e-18 Score=140.18 Aligned_cols=104 Identities=22% Similarity=0.294 Sum_probs=91.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEe
Q 014397 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNL 145 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~ 145 (425)
+...++|||+|||+++|+++|+++|+.||.|.+|.++.+ +.++|||||+|.+.++|++||+.++ ..+.++.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999865 4569999999999999999999777 889999999999
Q ss_pred cccCCCCCCCCCCCCcccceEEEeecCCcccHHHHHHHHhhcCC
Q 014397 146 AVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGE 189 (425)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~ 189 (425)
+...... .+++...++++|+++|++||.
T Consensus 82 a~~~~~~----------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 82 YNANRAF----------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CCHHHHT----------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred ecCChhh----------------hhhhHhHhHHHHHHHHHHhCC
Confidence 8654322 467788999999999999984
No 71
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.75 E-value=4.9e-18 Score=137.54 Aligned_cols=88 Identities=33% Similarity=0.619 Sum_probs=76.7
Q ss_pred cccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEE
Q 014397 63 IADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTV 142 (425)
Q Consensus 63 ~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~ 142 (425)
..+.+...++|||+|||+++|+++|+++|+.||+|++|+|+.++.+++++|||||+|.+.++|++||+.++..+.++.|.
T Consensus 18 ~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~ 97 (109)
T 2rs2_A 18 GSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTID 97 (109)
T ss_dssp --------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEE
Confidence 34456677899999999999999999999999999999999999899999999999999999999999998899999999
Q ss_pred EEecccCC
Q 014397 143 TNLAVAGN 150 (425)
Q Consensus 143 v~~~~~~~ 150 (425)
|.++..+.
T Consensus 98 V~~a~~~~ 105 (109)
T 2rs2_A 98 PKVAFPRR 105 (109)
T ss_dssp EEECCCCC
T ss_pred EEEccCCC
Confidence 99987654
No 72
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=6.1e-18 Score=135.63 Aligned_cols=87 Identities=21% Similarity=0.320 Sum_probs=79.0
Q ss_pred CCcccceEEEeecCCcccHHHHHHHHhh-cCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCc-cCCeEEE
Q 014397 159 VDVSLRKIFVGNVPNDMSADKLLAHFAC-YGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKT-VDGKQLN 235 (425)
Q Consensus 159 ~~~~~~~l~V~nL~~~~te~~L~~~F~~-~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~-~~gr~i~ 235 (425)
.....++|||+|||+++|+++|+++|++ ||.|++|.|+.++ +++++|||||+|.+.++|++||+.+ +.. |+|+.|.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3455689999999999999999999999 9999999999998 9999999999999999999999986 477 9999999
Q ss_pred EEEcccCCCCC
Q 014397 236 CRLADNKKAKP 246 (425)
Q Consensus 236 v~~a~~~~~~~ 246 (425)
|+++..+..+.
T Consensus 84 v~~a~~~~~~~ 94 (104)
T 2dhg_A 84 LSVAIPKASRV 94 (104)
T ss_dssp CCBCCCCCSCC
T ss_pred EEEccCCCcCC
Confidence 99997765544
No 73
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.74 E-value=1.3e-17 Score=136.25 Aligned_cols=88 Identities=32% Similarity=0.492 Sum_probs=81.0
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEE
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVT 143 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v 143 (425)
......++|||+|||+++|+++|+++|+.||.|++|+|+.++.+++++|||||+|.+.++|++||+.++ ..|.++.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345578899999999999999999999999999999999998899999999999999999999999887 8899999999
Q ss_pred EecccCCCC
Q 014397 144 NLAVAGNSG 152 (425)
Q Consensus 144 ~~~~~~~~~ 152 (425)
.++......
T Consensus 90 ~~a~~~~~~ 98 (115)
T 2dgo_A 90 NWATRKPPA 98 (115)
T ss_dssp EESSCCCCC
T ss_pred EEccCCCCC
Confidence 999776543
No 74
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=9.6e-18 Score=132.14 Aligned_cols=84 Identities=31% Similarity=0.538 Sum_probs=78.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEec
Q 014397 68 PTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLA 146 (425)
Q Consensus 68 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~ 146 (425)
...++|||+|||+++|+++|+++|++||+|++|+++.++.+++++|||||+|.+.++|++||+.++ ..|.++.|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 457899999999999999999999999999999999999899999999999999999999999777 8899999999999
Q ss_pred ccCCC
Q 014397 147 VAGNS 151 (425)
Q Consensus 147 ~~~~~ 151 (425)
..+..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 77554
No 75
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.6e-18 Score=135.21 Aligned_cols=86 Identities=14% Similarity=0.183 Sum_probs=78.0
Q ss_pred CCcccceEEEeecCCcccHHHHHHHHhhcCCcee-eeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEE
Q 014397 159 VDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEE-GPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCR 237 (425)
Q Consensus 159 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~-v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~ 237 (425)
.....++|||+|||+++|+++|+++|++||.|.+ |.|+.+ .+++++|||||+|+++++|++||+.+...|++|.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 89 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEE
Confidence 3455689999999999999999999999999997 889888 79999999999999999999999997799999999999
Q ss_pred EcccCCCC
Q 014397 238 LADNKKAK 245 (425)
Q Consensus 238 ~a~~~~~~ 245 (425)
+++.+...
T Consensus 90 ~~~~~~~~ 97 (104)
T 1wg5_A 90 KSSRAEVR 97 (104)
T ss_dssp EECTTTSC
T ss_pred ECCHHHHH
Confidence 98765543
No 76
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=8.4e-18 Score=133.86 Aligned_cols=86 Identities=19% Similarity=0.350 Sum_probs=78.9
Q ss_pred CCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEE
Q 014397 158 PVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNC 236 (425)
Q Consensus 158 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v 236 (425)
......++|||+|||+++|+++|+++|++||.|++|.|+.++ +++++|||||+|.+.++|++||+.+ +..|+++.|.|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 344567899999999999999999999999999999999997 8999999999999999999999885 68999999999
Q ss_pred EEcccCCC
Q 014397 237 RLADNKKA 244 (425)
Q Consensus 237 ~~a~~~~~ 244 (425)
.+++++..
T Consensus 91 ~~a~~~~~ 98 (100)
T 2do4_A 91 AISNSGPS 98 (100)
T ss_dssp EECCCCSC
T ss_pred EECCCCCC
Confidence 99987654
No 77
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=9e-18 Score=134.90 Aligned_cols=87 Identities=25% Similarity=0.365 Sum_probs=80.5
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEE
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVT 143 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v 143 (425)
......++|||+|||+++|+++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+.++ ..|.++.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345677899999999999999999999999999999999998899999999999999999999999877 8899999999
Q ss_pred EecccCCC
Q 014397 144 NLAVAGNS 151 (425)
Q Consensus 144 ~~~~~~~~ 151 (425)
.++.....
T Consensus 90 ~~a~~~~~ 97 (105)
T 1x5u_A 90 NKASAHNK 97 (105)
T ss_dssp EETTTTSC
T ss_pred EECCCCCc
Confidence 99977554
No 78
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=136.94 Aligned_cols=85 Identities=27% Similarity=0.370 Sum_probs=78.0
Q ss_pred CcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEE
Q 014397 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRL 238 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~ 238 (425)
....++|||+|||+++|+++|+++|++||.|++|.|+.++ +++++|||||+|++.++|++||+.+ +..|+++.|.|++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999997 9999999999999999999999986 5899999999999
Q ss_pred cccCCCC
Q 014397 239 ADNKKAK 245 (425)
Q Consensus 239 a~~~~~~ 245 (425)
++.+...
T Consensus 83 a~~~~~~ 89 (116)
T 2fy1_A 83 AKKPSFQ 89 (116)
T ss_dssp CCCSSCS
T ss_pred CCCCCCC
Confidence 9876543
No 79
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.74 E-value=1.3e-18 Score=135.85 Aligned_cols=82 Identities=16% Similarity=0.222 Sum_probs=70.8
Q ss_pred ceEEEeecCCcccHHHHHHHHhhcC--CceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEcc
Q 014397 164 RKIFVGNVPNDMSADKLLAHFACYG--EIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLAD 240 (425)
Q Consensus 164 ~~l~V~nL~~~~te~~L~~~F~~~G--~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a~ 240 (425)
.+|||+|||+++|+++|+++|++|| .|++|+|+.|+.+++++|||||+|.+.++|++||+.+ +..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 9999999999999999999999999999999999886 589999999999998
Q ss_pred cCCCC
Q 014397 241 NKKAK 245 (425)
Q Consensus 241 ~~~~~ 245 (425)
+....
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 76543
No 80
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=132.25 Aligned_cols=86 Identities=26% Similarity=0.452 Sum_probs=78.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEEe
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNL 145 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~~ 145 (425)
.....++|||+|||+++|+++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+.....|.++.|.|.+
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 85 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45567899999999999999999999999999999999999899999999999999999999999444899999999999
Q ss_pred cccCCC
Q 014397 146 AVAGNS 151 (425)
Q Consensus 146 ~~~~~~ 151 (425)
+.....
T Consensus 86 a~~~~~ 91 (99)
T 2dgs_A 86 AEPRDS 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCcc
Confidence 976554
No 81
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.74 E-value=4.7e-18 Score=131.61 Aligned_cols=81 Identities=26% Similarity=0.424 Sum_probs=74.9
Q ss_pred ccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEcc
Q 014397 162 SLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLAD 240 (425)
Q Consensus 162 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a~ 240 (425)
+.++|||+|||+++|+++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++|++.+ +..|+|+.|.|++++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 4578999999999999999999999999999999999999999999999999999999999985 689999999999997
Q ss_pred cC
Q 014397 241 NK 242 (425)
Q Consensus 241 ~~ 242 (425)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 64
No 82
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.74 E-value=6.6e-18 Score=138.08 Aligned_cols=87 Identities=25% Similarity=0.371 Sum_probs=80.1
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEE
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVT 143 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v 143 (425)
......++|||+|||+++|+++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+.++ ..|.++.|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345567899999999999999999999999999999999999899999999999999999999998877 8899999999
Q ss_pred EecccCCC
Q 014397 144 NLAVAGNS 151 (425)
Q Consensus 144 ~~~~~~~~ 151 (425)
.++.....
T Consensus 100 ~~a~~~~~ 107 (115)
T 2cpz_A 100 QLKRSKND 107 (115)
T ss_dssp ECCCCSCC
T ss_pred EEcCCCCc
Confidence 99976554
No 83
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.74 E-value=6e-18 Score=129.75 Aligned_cols=80 Identities=21% Similarity=0.409 Sum_probs=75.9
Q ss_pred ceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEcccC
Q 014397 164 RKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLADNK 242 (425)
Q Consensus 164 ~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a~~~ 242 (425)
.+|||+|||+++|+++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++|++.+ +..|+|+.|.|++++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 68999999999999999999999999999999999999999999999999999999999985 68999999999999875
Q ss_pred C
Q 014397 243 K 243 (425)
Q Consensus 243 ~ 243 (425)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 84
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.74 E-value=4.1e-18 Score=141.67 Aligned_cols=89 Identities=27% Similarity=0.373 Sum_probs=81.0
Q ss_pred CCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEE
Q 014397 158 PVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNC 236 (425)
Q Consensus 158 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v 236 (425)
......++|||+|||+++|+++|+++|++||.|++|.|+.++.+++++|||||+|.+.++|++||+.+ +..|+++.|.|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999875 68999999999
Q ss_pred EEcccCCCCC
Q 014397 237 RLADNKKAKP 246 (425)
Q Consensus 237 ~~a~~~~~~~ 246 (425)
+++..+..+.
T Consensus 97 ~~a~~~~~~~ 106 (126)
T 3ex7_B 97 DWCFVRGPPK 106 (126)
T ss_dssp EESEESSSCC
T ss_pred EEecCCCCCC
Confidence 9998765543
No 85
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.2e-18 Score=136.17 Aligned_cols=82 Identities=13% Similarity=0.169 Sum_probs=74.2
Q ss_pred CcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEEEc
Q 014397 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA 239 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~~a 239 (425)
....++|||+|||+++|+++|+++|++||. ++|+|++|+ +++++|||||+|+++++|++||+.+...|++|.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 445689999999999999999999999995 499999997 899999999999999999999976678999999999988
Q ss_pred ccCC
Q 014397 240 DNKK 243 (425)
Q Consensus 240 ~~~~ 243 (425)
....
T Consensus 90 ~~~~ 93 (102)
T 1wez_A 90 STAG 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7544
No 86
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8e-18 Score=134.46 Aligned_cols=86 Identities=37% Similarity=0.667 Sum_probs=79.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTN 144 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~ 144 (425)
.....++|||+|||+++|+++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+.++ ..|.++.|.|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 45567899999999999999999999999999999999999899999999999999999999998877 88999999999
Q ss_pred ecccCCC
Q 014397 145 LAVAGNS 151 (425)
Q Consensus 145 ~~~~~~~ 151 (425)
++.....
T Consensus 88 ~a~~~~~ 94 (102)
T 1x5s_A 88 QAGKSSD 94 (102)
T ss_dssp EEECCCC
T ss_pred ECCCCCC
Confidence 9977554
No 87
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=7.8e-18 Score=134.80 Aligned_cols=86 Identities=22% Similarity=0.362 Sum_probs=79.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTN 144 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~ 144 (425)
.....++|||+|||+++|+++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+.++ ..|.++.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44567899999999999999999999999999999999999899999999999999999999999777 88999999999
Q ss_pred ecccCCC
Q 014397 145 LAVAGNS 151 (425)
Q Consensus 145 ~~~~~~~ 151 (425)
++.....
T Consensus 89 ~a~~~~~ 95 (103)
T 2dnm_A 89 VARYGRR 95 (103)
T ss_dssp ECSSCCS
T ss_pred ECCcCCC
Confidence 9976543
No 88
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.74 E-value=1.2e-17 Score=134.21 Aligned_cols=87 Identities=26% Similarity=0.313 Sum_probs=78.8
Q ss_pred CcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCC---eEEE
Q 014397 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDG---KQLN 235 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~g---r~i~ 235 (425)
....++|||+|||+++|+++|+++|++||.|++|.|+.++ +++++|||||+|.+.++|++||+.+ +..|.+ +.|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3457899999999999999999999999999999999997 8999999999999999999999985 577887 9999
Q ss_pred EEEcccCCCCCC
Q 014397 236 CRLADNKKAKPM 247 (425)
Q Consensus 236 v~~a~~~~~~~~ 247 (425)
|.+++.+..+..
T Consensus 91 V~~a~~~~~~~~ 102 (105)
T 2dnh_A 91 VKFADTDKESGP 102 (105)
T ss_dssp EEESCSSCCCSC
T ss_pred EEECccCcccCC
Confidence 999988776543
No 89
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=9.9e-18 Score=132.01 Aligned_cols=85 Identities=18% Similarity=0.253 Sum_probs=78.5
Q ss_pred CCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEE
Q 014397 157 NPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLN 235 (425)
Q Consensus 157 ~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~ 235 (425)
.......++|||+|||+++|+++|+++|++||.|++|.|+.++.+++++|||||+|++.++|++||+.+ +..|++++|.
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 344566789999999999999999999999999999999999999999999999999999999999985 6899999999
Q ss_pred EEEccc
Q 014397 236 CRLADN 241 (425)
Q Consensus 236 v~~a~~ 241 (425)
|++++.
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999864
No 90
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.74 E-value=7e-18 Score=130.61 Aligned_cols=81 Identities=33% Similarity=0.507 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEec
Q 014397 68 PTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLA 146 (425)
Q Consensus 68 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~ 146 (425)
.+.++|||+|||+++|+++|+++|++||+|.+|+++.++.+++++|||||+|.+.++|++||+.++ ..+.++.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 356789999999999999999999999999999999998899999999999999999999999877 8899999999998
Q ss_pred cc
Q 014397 147 VA 148 (425)
Q Consensus 147 ~~ 148 (425)
..
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 65
No 91
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.9e-18 Score=134.77 Aligned_cols=86 Identities=24% Similarity=0.376 Sum_probs=79.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTN 144 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~ 144 (425)
.....++|||+|||+++|+++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+.++ ..|.++.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45567899999999999999999999999999999999999899999999999999999999999887 88999999999
Q ss_pred ecccCCC
Q 014397 145 LAVAGNS 151 (425)
Q Consensus 145 ~~~~~~~ 151 (425)
++.....
T Consensus 91 ~a~~~~~ 97 (103)
T 2cq0_A 91 WAKPSTN 97 (103)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9976543
No 92
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.1e-18 Score=135.40 Aligned_cols=82 Identities=18% Similarity=0.260 Sum_probs=75.6
Q ss_pred CCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEEE
Q 014397 159 VDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRL 238 (425)
Q Consensus 159 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~~ 238 (425)
.....++|||+|||+++|+++|+++|++||.|.+|.|++|+. ++++|||||+|+++++|++||+.++..|+|+.|.|.+
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILF 85 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345568999999999999999999999999999999999987 9999999999999999999999657999999999998
Q ss_pred ccc
Q 014397 239 ADN 241 (425)
Q Consensus 239 a~~ 241 (425)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 754
No 93
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.1e-17 Score=132.29 Aligned_cols=89 Identities=18% Similarity=0.339 Sum_probs=79.1
Q ss_pred CCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEE
Q 014397 157 NPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLN 235 (425)
Q Consensus 157 ~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~ 235 (425)
.......++|||+|||+++|+++|+++|++||.|++|.|+.++. .+++||||+|.+.++|++||+.+ +..|+++.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 86 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34456678999999999999999999999999999999998854 38999999999999999999985 6899999999
Q ss_pred EEEcccCCCCCC
Q 014397 236 CRLADNKKAKPM 247 (425)
Q Consensus 236 v~~a~~~~~~~~ 247 (425)
|.++..+..+..
T Consensus 87 v~~a~~~~~~~~ 98 (103)
T 2cq3_A 87 VNNATARVMTNS 98 (103)
T ss_dssp EEECCSSCCCCC
T ss_pred EEEcccCCCCCC
Confidence 999988766554
No 94
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=9.2e-18 Score=131.97 Aligned_cols=82 Identities=24% Similarity=0.379 Sum_probs=76.5
Q ss_pred CCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEE
Q 014397 159 VDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCR 237 (425)
Q Consensus 159 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~ 237 (425)
.....++|||+|||+++|+++|+++|++||.|++|.|+.++.++++++||||+|.+.++|++||+.+ +..|++++|.|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 3456689999999999999999999999999999999999999999999999999999999999876 589999999999
Q ss_pred Ecc
Q 014397 238 LAD 240 (425)
Q Consensus 238 ~a~ 240 (425)
+++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 874
No 95
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.4e-18 Score=137.32 Aligned_cols=84 Identities=15% Similarity=0.172 Sum_probs=77.8
Q ss_pred CCcccceEEEeecCCcccHHHHHHHHhhcCCc-eeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEE
Q 014397 159 VDVSLRKIFVGNVPNDMSADKLLAHFACYGEI-EEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCR 237 (425)
Q Consensus 159 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v-~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~ 237 (425)
.....++|||+|||+++|+++|+++|++||.| ..|+|+.|+ +++++|||||+|++.++|++||+.+...|+++.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEE
Confidence 34556899999999999999999999999999 899999998 9999999999999999999999997799999999999
Q ss_pred EcccCC
Q 014397 238 LADNKK 243 (425)
Q Consensus 238 ~a~~~~ 243 (425)
++..+.
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 997664
No 96
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.73 E-value=6.7e-18 Score=130.12 Aligned_cols=80 Identities=28% Similarity=0.469 Sum_probs=75.3
Q ss_pred cccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEc
Q 014397 161 VSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLA 239 (425)
Q Consensus 161 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a 239 (425)
.+.++|||+|||+++|+++|+++|++||.|++|.|+.++.+++++|||||+|.+.++|++|++.+ +..|+|++|.|+++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45689999999999999999999999999999999999999999999999999999999999875 69999999999987
Q ss_pred c
Q 014397 240 D 240 (425)
Q Consensus 240 ~ 240 (425)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 97
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9.9e-18 Score=134.17 Aligned_cols=82 Identities=18% Similarity=0.267 Sum_probs=75.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEEe
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNL 145 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~~ 145 (425)
.+...++|||+|||+++|+++|+++|++||+|.+|+|++++. ++++|||||+|.+.++|++||+.....|.++.|.|.+
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILF 85 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345568899999999999999999999999999999999986 9999999999999999999999545899999999998
Q ss_pred ccc
Q 014397 146 AVA 148 (425)
Q Consensus 146 ~~~ 148 (425)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 765
No 98
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1e-17 Score=132.18 Aligned_cols=84 Identities=27% Similarity=0.417 Sum_probs=78.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEE-EEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEe
Q 014397 68 PTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEA-VVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNL 145 (425)
Q Consensus 68 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v-~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~ 145 (425)
...++|||+|||+++|+++|+++|++||+|.+| +|+.++.+++++|||||+|.+.++|++||+.++ ..|.++.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 356899999999999999999999999999999 999998899999999999999999999999887 889999999999
Q ss_pred cccCCC
Q 014397 146 AVAGNS 151 (425)
Q Consensus 146 ~~~~~~ 151 (425)
+.....
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 976554
No 99
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.5e-17 Score=131.80 Aligned_cols=87 Identities=18% Similarity=0.279 Sum_probs=77.4
Q ss_pred CCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEE
Q 014397 158 PVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNC 236 (425)
Q Consensus 158 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v 236 (425)
......++|||+|||+++|+++|+++|++||.|++|.|+.++.+ +++||||+|.+.++|++||+.+ +..|+++.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 44556789999999999999999999999999999999998543 6899999999999999999975 68999999999
Q ss_pred EEcccCCCCC
Q 014397 237 RLADNKKAKP 246 (425)
Q Consensus 237 ~~a~~~~~~~ 246 (425)
.+++.+..+.
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2cqi_A 88 NWATTPSSQK 97 (103)
T ss_dssp EECCCTTCCC
T ss_pred EECCCCcccc
Confidence 9998766544
No 100
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=133.97 Aligned_cols=86 Identities=22% Similarity=0.404 Sum_probs=79.2
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEE
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVT 143 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v 143 (425)
......++|||+|||+++|+++|+++|+.||+|.+|+|+.++.+++++|||||+|.+.++|++||+.++ ..|.++.|.|
T Consensus 18 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 18 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp CCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 345567899999999999999999999999999999999999999999999999999999999999876 8899999999
Q ss_pred EecccCC
Q 014397 144 NLAVAGN 150 (425)
Q Consensus 144 ~~~~~~~ 150 (425)
.++..+.
T Consensus 98 ~~a~~~~ 104 (106)
T 1p27_B 98 DWCFVRG 104 (106)
T ss_dssp EESEESS
T ss_pred EeecCCC
Confidence 9987643
No 101
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.73 E-value=9.2e-18 Score=129.33 Aligned_cols=80 Identities=28% Similarity=0.511 Sum_probs=75.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEe
Q 014397 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNL 145 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~ 145 (425)
+.+.++|||+|||+++|+++|+++|++||+|.+|+++.++.+++++|||||+|.+.++|++|++.++ ..+.++.|.|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999999998899999999999999999999998777 889999999998
Q ss_pred c
Q 014397 146 A 146 (425)
Q Consensus 146 ~ 146 (425)
+
T Consensus 84 a 84 (85)
T 3mdf_A 84 A 84 (85)
T ss_dssp C
T ss_pred c
Confidence 6
No 102
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=5.6e-18 Score=135.04 Aligned_cols=81 Identities=17% Similarity=0.229 Sum_probs=72.8
Q ss_pred cccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC---CCccCCeEEEEE
Q 014397 161 VSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP---IKTVDGKQLNCR 237 (425)
Q Consensus 161 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~---~~~~~gr~i~v~ 237 (425)
...++|||+|||+++|+++|+++|++||+|++|+|+++ ||||||+|++.++|++||+.+ ...|+|++|.|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 45689999999999999999999999999999999876 799999999999999999964 378999999999
Q ss_pred EcccCCCCCC
Q 014397 238 LADNKKAKPM 247 (425)
Q Consensus 238 ~a~~~~~~~~ 247 (425)
+++.+..+..
T Consensus 88 ~A~~~~~~~~ 97 (105)
T 1sjq_A 88 FSNHKELKTD 97 (105)
T ss_dssp CCSSSSCCCT
T ss_pred EcCCCCCCcc
Confidence 9987766553
No 103
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.73 E-value=1.1e-17 Score=135.53 Aligned_cols=87 Identities=28% Similarity=0.366 Sum_probs=80.1
Q ss_pred CCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEE
Q 014397 158 PVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNC 236 (425)
Q Consensus 158 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v 236 (425)
......++|||+|||+++|+++|+++|++||.|++|.|+.++.+++++|||||+|.+.++|++||+.+ +..|+|+.|.|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999975 68999999999
Q ss_pred EEcccCCC
Q 014397 237 RLADNKKA 244 (425)
Q Consensus 237 ~~a~~~~~ 244 (425)
.++..+..
T Consensus 101 ~~a~~~~~ 108 (110)
T 1oo0_B 101 DWCFVKGP 108 (110)
T ss_dssp EESEESSC
T ss_pred EEcccCCC
Confidence 99987654
No 104
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.73 E-value=9.8e-18 Score=130.36 Aligned_cols=81 Identities=30% Similarity=0.467 Sum_probs=75.6
Q ss_pred ccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEEEccc
Q 014397 162 SLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADN 241 (425)
Q Consensus 162 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~~a~~ 241 (425)
+.++|||+|||+++|+++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++|+..++..|+|+.|.|.+++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 45899999999999999999999999999999999999999999999999999999999994456999999999999976
Q ss_pred C
Q 014397 242 K 242 (425)
Q Consensus 242 ~ 242 (425)
+
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 105
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.73 E-value=3.4e-18 Score=133.45 Aligned_cols=80 Identities=21% Similarity=0.341 Sum_probs=71.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecc
Q 014397 71 RKLFIRGLGWDTTTEGLRSIFSAYG--ELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAV 147 (425)
Q Consensus 71 ~~lfV~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~ 147 (425)
.+|||+|||+++|+++|+++|++|| .|.+|+++.++.+++++|||||+|.+.++|++||+.++ ..+.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999998888 89999999999987
Q ss_pred cCC
Q 014397 148 AGN 150 (425)
Q Consensus 148 ~~~ 150 (425)
...
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 644
No 106
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.73 E-value=7.3e-18 Score=126.74 Aligned_cols=75 Identities=23% Similarity=0.518 Sum_probs=71.4
Q ss_pred eEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEEEc
Q 014397 165 KIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA 239 (425)
Q Consensus 165 ~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~~a 239 (425)
+|||+|||+++|+++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++|++.++..|+|++|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 589999999999999999999999999999999999999999999999999999999986579999999999875
No 107
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.73 E-value=3.7e-18 Score=141.54 Aligned_cols=84 Identities=26% Similarity=0.432 Sum_probs=76.9
Q ss_pred cccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEEEcc
Q 014397 161 VSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLAD 240 (425)
Q Consensus 161 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~~a~ 240 (425)
...++|||+|||+++|+++|+++|++||.|++|.|+.++.+++++|||||+|.+.++|++||+.++..|+|+.|.|++++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 34689999999999999999999999999999999999999999999999999999999999434689999999999997
Q ss_pred cCCC
Q 014397 241 NKKA 244 (425)
Q Consensus 241 ~~~~ 244 (425)
....
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6543
No 108
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.6e-17 Score=132.18 Aligned_cols=85 Identities=24% Similarity=0.431 Sum_probs=78.2
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEE
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVT 143 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v 143 (425)
......++|||+|||+++|+++|+++|++||+|++|+|+.++ +++++|||||+|.+.++|++||+.++ ..|.++.|.|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345667899999999999999999999999999999999998 99999999999999999999998877 8899999999
Q ss_pred EecccCC
Q 014397 144 NLAVAGN 150 (425)
Q Consensus 144 ~~~~~~~ 150 (425)
.++....
T Consensus 91 ~~a~~~~ 97 (100)
T 2do4_A 91 AISNSGP 97 (100)
T ss_dssp EECCCCS
T ss_pred EECCCCC
Confidence 9987644
No 109
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=3.4e-17 Score=133.52 Aligned_cols=86 Identities=17% Similarity=0.218 Sum_probs=77.8
Q ss_pred CCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEE
Q 014397 159 VDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCR 237 (425)
Q Consensus 159 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~ 237 (425)
.....++|||+|||+++|+++|+++|++||.|++|.|+.++ ++++++||||+|++.++|++||+.+ +..|+++.|.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34456899999999999999999999999999999999997 6999999999999999999999975 689999999999
Q ss_pred EcccCCCC
Q 014397 238 LADNKKAK 245 (425)
Q Consensus 238 ~a~~~~~~ 245 (425)
+++....+
T Consensus 90 ~a~~~~~~ 97 (114)
T 2do0_A 90 MDERALPK 97 (114)
T ss_dssp ECSCCCCC
T ss_pred EcccCCCC
Confidence 99765444
No 110
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-17 Score=133.98 Aligned_cols=87 Identities=24% Similarity=0.445 Sum_probs=80.2
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeec-CCCCCcccEEEEEecchHHHHHHHhcC-C-CCcCCceE
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILD-KATGKSKGYGFITFKHIDGAMLALKEP-S-KKIDGRVT 141 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~~g~skG~aFV~F~~~e~A~~Al~~~-~-~~~~gr~~ 141 (425)
..+...++|||+|||+++|+++|+++|++||+|++|+|+.+ +.+++++|||||+|.+.++|++||+.+ + ..|.++.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 45567889999999999999999999999999999999999 789999999999999999999999997 5 89999999
Q ss_pred EEEecccCCC
Q 014397 142 VTNLAVAGNS 151 (425)
Q Consensus 142 ~v~~~~~~~~ 151 (425)
.|.++.....
T Consensus 90 ~v~~a~~~~~ 99 (107)
T 2cph_A 90 VLEWADSEVT 99 (107)
T ss_dssp EEEECCCCCC
T ss_pred EEEeCCCCCC
Confidence 9999977554
No 111
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.73 E-value=6.5e-18 Score=141.93 Aligned_cols=121 Identities=11% Similarity=0.109 Sum_probs=76.4
Q ss_pred cEEEEEecchHHHHHHHhcCCCCcCCceEEEEecccCCCCCCCCCCCCcccceEEEeecCCcccHHHHHHHHhhcCC---
Q 014397 113 GYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGE--- 189 (425)
Q Consensus 113 G~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~--- 189 (425)
+++|.+|...+.+..........+.+..- .. ............++|||+|||+++|+++|+++|++||.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~gg~~~--g~------g~~~~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~ 73 (136)
T 2hgl_A 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQM--GR------GSMMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDG 73 (136)
T ss_dssp -----------------------------------------CCSCSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSS
T ss_pred ccccccccchHHHHhhccCCCcccCCCCC--CC------CCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCc
Confidence 46677777666655555443333222110 00 00011233445689999999999999999999999999
Q ss_pred ceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEEEcccC
Q 014397 190 IEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNK 242 (425)
Q Consensus 190 v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~~a~~~ 242 (425)
|++|+|++|+. ++++|||||+|++.++|++||+.+...|++|.|.|.+++.+
T Consensus 74 v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~a~~~ 125 (136)
T 2hgl_A 74 AAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHRT 125 (136)
T ss_dssp STTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEEECCHH
T ss_pred eeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEEECChH
Confidence 89999999976 99999999999999999999994458999999999998654
No 112
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.73 E-value=1.1e-17 Score=132.09 Aligned_cols=81 Identities=23% Similarity=0.482 Sum_probs=76.6
Q ss_pred cceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEccc
Q 014397 163 LRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLADN 241 (425)
Q Consensus 163 ~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a~~ 241 (425)
+++|||+|||+++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++|++.+ +..|+|+.|.|++++.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 478999999999999999999999999999999999999999999999999999999999885 6899999999999977
Q ss_pred CC
Q 014397 242 KK 243 (425)
Q Consensus 242 ~~ 243 (425)
+.
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 113
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.73 E-value=2.1e-17 Score=132.71 Aligned_cols=86 Identities=23% Similarity=0.365 Sum_probs=78.2
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCC---ce
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDG---RV 140 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~g---r~ 140 (425)
......++|||+|||+++|+++|+++|++||+|++|+|+.++ +++++|||||+|.+.++|++||+.++ ..+.+ +.
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~ 88 (105)
T 2dnh_A 10 SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSS 88 (105)
T ss_dssp CSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCcc
Confidence 344568999999999999999999999999999999999997 89999999999999999999999877 77787 99
Q ss_pred EEEEecccCCC
Q 014397 141 TVTNLAVAGNS 151 (425)
Q Consensus 141 ~~v~~~~~~~~ 151 (425)
|.|.++.....
T Consensus 89 l~V~~a~~~~~ 99 (105)
T 2dnh_A 89 LVVKFADTDKE 99 (105)
T ss_dssp CEEEESCSSCC
T ss_pred EEEEECccCcc
Confidence 99999977554
No 114
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.73 E-value=3.4e-18 Score=136.27 Aligned_cols=81 Identities=22% Similarity=0.233 Sum_probs=76.2
Q ss_pred ccceEEEeecCC------cccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCC-eE
Q 014397 162 SLRKIFVGNVPN------DMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDG-KQ 233 (425)
Q Consensus 162 ~~~~l~V~nL~~------~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~g-r~ 233 (425)
..++|||+|||+ ++++++|+++|++||.|++|+|+.|+.|++++|||||+|.++++|++||+.+ +..|++ +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 357899999999 9999999999999999999999999999999999999999999999999885 699999 99
Q ss_pred EEEEEcccC
Q 014397 234 LNCRLADNK 242 (425)
Q Consensus 234 i~v~~a~~~ 242 (425)
|.|.++.++
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999999754
No 115
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.6e-17 Score=131.63 Aligned_cols=84 Identities=27% Similarity=0.464 Sum_probs=77.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCC---CCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEE
Q 014397 68 PTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKA---TGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVT 143 (425)
Q Consensus 68 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~---~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v 143 (425)
.+.++|||+|||+++|+++|+++|++||+|++|+|+.++. +++++|||||+|.+.++|++||+.++ ..|.++.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4568899999999999999999999999999999999876 66899999999999999999999877 8899999999
Q ss_pred EecccCCC
Q 014397 144 NLAVAGNS 151 (425)
Q Consensus 144 ~~~~~~~~ 151 (425)
.++.....
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99976554
No 116
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.8e-18 Score=134.52 Aligned_cols=87 Identities=25% Similarity=0.439 Sum_probs=79.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTN 144 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~ 144 (425)
.....++|||+|||+++|+++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+.++ ..|.++.|.|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999998877 88999999999
Q ss_pred ecccCCCC
Q 014397 145 LAVAGNSG 152 (425)
Q Consensus 145 ~~~~~~~~ 152 (425)
++......
T Consensus 88 ~a~~~~~~ 95 (102)
T 2cqb_A 88 LAKPMRIK 95 (102)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99775543
No 117
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.73 E-value=1.5e-17 Score=133.86 Aligned_cols=87 Identities=25% Similarity=0.358 Sum_probs=79.3
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCc---CCce
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKI---DGRV 140 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~---~gr~ 140 (425)
..+...++|||+|||+++|+++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+.++ ..+ .++.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 455678899999999999999999999999999999999999899999999999999999999999877 566 8899
Q ss_pred EEEEecccCCC
Q 014397 141 TVTNLAVAGNS 151 (425)
Q Consensus 141 ~~v~~~~~~~~ 151 (425)
|.|.++.....
T Consensus 88 l~v~~a~~~~~ 98 (106)
T 2dgp_A 88 IQVKPADSESR 98 (106)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEECCcccc
Confidence 99999976554
No 118
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=131.38 Aligned_cols=82 Identities=32% Similarity=0.513 Sum_probs=76.7
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEE
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVT 143 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v 143 (425)
......++|||+|||+++|+++|+++|++||+|++|+++.++.+++++|||||+|.+.++|++||+.++ ..|.++.|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345677899999999999999999999999999999999999899999999999999999999999887 8899999999
Q ss_pred Eec
Q 014397 144 NLA 146 (425)
Q Consensus 144 ~~~ 146 (425)
.++
T Consensus 91 ~~a 93 (94)
T 2e5h_A 91 SIA 93 (94)
T ss_dssp EEC
T ss_pred Eec
Confidence 986
No 119
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.9e-17 Score=132.93 Aligned_cols=86 Identities=22% Similarity=0.337 Sum_probs=75.6
Q ss_pred CCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEE
Q 014397 158 PVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNC 236 (425)
Q Consensus 158 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v 236 (425)
......++|||+|||+++|+++|+++|++||.|++|.|..+ .++++||||+|++.++|++||+.+ +..|+++.|.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 44556789999999999999999999999999999999654 568999999999999999999875 68999999999
Q ss_pred EEcccCCCCC
Q 014397 237 RLADNKKAKP 246 (425)
Q Consensus 237 ~~a~~~~~~~ 246 (425)
++++.+....
T Consensus 94 ~~a~~~~~~~ 103 (109)
T 1x4a_A 94 EFPRSGRGTG 103 (109)
T ss_dssp ECCCCCCCCC
T ss_pred EEcccCCCCC
Confidence 9998765443
No 120
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.8e-17 Score=134.46 Aligned_cols=89 Identities=30% Similarity=0.494 Sum_probs=80.5
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-------CCc
Q 014397 64 ADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-------KKI 136 (425)
Q Consensus 64 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-------~~~ 136 (425)
.......++|||+|||+++|+++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+.++ ..|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 9 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 3455678899999999999999999999999999999999999999999999999999999999999774 678
Q ss_pred CCceEEEEecccCCCC
Q 014397 137 DGRVTVTNLAVAGNSG 152 (425)
Q Consensus 137 ~gr~~~v~~~~~~~~~ 152 (425)
.++.|.|.++..+...
T Consensus 89 ~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 89 DGRQLKVDLAVTRDEA 104 (111)
T ss_dssp SSCEEEEECCCCCCCC
T ss_pred cCEEEEEEECCCCccC
Confidence 9999999999775543
No 121
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.73 E-value=7.6e-18 Score=140.61 Aligned_cols=87 Identities=18% Similarity=0.279 Sum_probs=80.2
Q ss_pred CCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEE
Q 014397 158 PVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNC 236 (425)
Q Consensus 158 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v 236 (425)
......++|||+|||+++|+++|+++|++||+|++|+|+.|+.+++++|||||+|++.++|++||+.+ +..|+|++|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999985 68999999999
Q ss_pred EEcccCCC
Q 014397 237 RLADNKKA 244 (425)
Q Consensus 237 ~~a~~~~~ 244 (425)
++++.++.
T Consensus 121 ~~a~~~~p 128 (129)
T 2kxn_B 121 DFSITKRP 128 (129)
T ss_dssp SCCSSSSC
T ss_pred EEecCCCC
Confidence 99987654
No 122
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.72 E-value=2.9e-17 Score=134.53 Aligned_cols=85 Identities=32% Similarity=0.489 Sum_probs=78.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEe
Q 014397 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNL 145 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~ 145 (425)
....++|||+|||+++|+++|+++|++||.|++|+|+.++ +++++|||||+|.+.++|++||+.++ ..|.++.|.|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999998 99999999999999999999999887 889999999999
Q ss_pred cccCCCC
Q 014397 146 AVAGNSG 152 (425)
Q Consensus 146 ~~~~~~~ 152 (425)
+......
T Consensus 83 a~~~~~~ 89 (116)
T 2fy1_A 83 AKKPSFQ 89 (116)
T ss_dssp CCCSSCS
T ss_pred CCCCCCC
Confidence 9765543
No 123
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.9e-17 Score=131.56 Aligned_cols=84 Identities=21% Similarity=0.292 Sum_probs=77.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCee-EEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCce---
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELE-EAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRV--- 140 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~-~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~--- 140 (425)
.....++|||+|||+++|+++|+++|++||+|+ +|+|++++.+++++|||||+|.+.++|++||+.++ ..+.++.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 345678999999999999999999999999999 99999999999999999999999999999999888 8899998
Q ss_pred -EEEEecccC
Q 014397 141 -TVTNLAVAG 149 (425)
Q Consensus 141 -~~v~~~~~~ 149 (425)
|.|.++...
T Consensus 85 ~l~v~~a~~~ 94 (99)
T 2div_A 85 RFKLNYATYS 94 (99)
T ss_dssp ECCEEETTCC
T ss_pred eEEEeecCCC
Confidence 888888654
No 124
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.72 E-value=1.4e-17 Score=127.61 Aligned_cols=79 Identities=30% Similarity=0.477 Sum_probs=75.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecccC
Q 014397 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAVAG 149 (425)
Q Consensus 71 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~~~ 149 (425)
.+|||+|||+++|+++|+++|++||+|.+|+++.++.+++++|||||+|.+.++|++|++.++ ..+.++.|.|.++..+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 579999999999999999999999999999999998899999999999999999999999877 8899999999998754
No 125
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.72 E-value=8.9e-18 Score=137.36 Aligned_cols=82 Identities=18% Similarity=0.340 Sum_probs=73.4
Q ss_pred cceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEccc
Q 014397 163 LRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLADN 241 (425)
Q Consensus 163 ~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a~~ 241 (425)
..+|||+|||+++|+++|+++|++||.|++|+|+.|+ +.+||||||+|++.++|++||+.+ +..|+|++|.|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4689999999999999999999999999999999985 458999999999999999999885 6999999999999987
Q ss_pred CCCCC
Q 014397 242 KKAKP 246 (425)
Q Consensus 242 ~~~~~ 246 (425)
+..+.
T Consensus 83 ~~~~~ 87 (115)
T 4f25_A 83 RKERE 87 (115)
T ss_dssp CCC--
T ss_pred ccccc
Confidence 65443
No 126
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.1e-17 Score=131.82 Aligned_cols=84 Identities=26% Similarity=0.457 Sum_probs=77.9
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEE
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVT 143 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v 143 (425)
..+...++|||+|||+++|+++|+++|++||+|++|+++.++.+++++|||||+|.+.++|++||+.++ ..+.++.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345567899999999999999999999999999999999999899999999999999999999999877 8899999999
Q ss_pred Eeccc
Q 014397 144 NLAVA 148 (425)
Q Consensus 144 ~~~~~ 148 (425)
.++..
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 98854
No 127
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.72 E-value=1.3e-17 Score=135.17 Aligned_cols=87 Identities=21% Similarity=0.376 Sum_probs=79.8
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEE
Q 014397 64 ADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTV 142 (425)
Q Consensus 64 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~ 142 (425)
.......++|||+|||+++|+++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+.++ ..|.++.|.
T Consensus 20 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 99 (110)
T 1oo0_B 20 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 99 (110)
T ss_dssp BCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 3445667899999999999999999999999999999999999899999999999999999999999777 889999999
Q ss_pred EEecccCC
Q 014397 143 TNLAVAGN 150 (425)
Q Consensus 143 v~~~~~~~ 150 (425)
|.++....
T Consensus 100 V~~a~~~~ 107 (110)
T 1oo0_B 100 VDWCFVKG 107 (110)
T ss_dssp EEESEESS
T ss_pred EEEcccCC
Confidence 99987644
No 128
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.9e-18 Score=139.24 Aligned_cols=86 Identities=14% Similarity=0.240 Sum_probs=78.4
Q ss_pred CcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEEEc
Q 014397 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA 239 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~~a 239 (425)
....++|||+|||+++|+++|+++|++||.|++|.|+.|+.+++++|||||+|.+.++|++||..++..|+|+.|.|.++
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEH
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEec
Confidence 34568999999999999999999999999999999999999999999999999999999999943579999999999999
Q ss_pred ccCCCC
Q 014397 240 DNKKAK 245 (425)
Q Consensus 240 ~~~~~~ 245 (425)
+.+..+
T Consensus 102 ~~~~~~ 107 (114)
T 2cq4_A 102 QAEKNR 107 (114)
T ss_dssp HHHHHH
T ss_pred CCCccC
Confidence 766543
No 129
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=131.82 Aligned_cols=83 Identities=24% Similarity=0.264 Sum_probs=76.9
Q ss_pred CCCcccceEEEeecCCcccHHHHHHHHhhcCCcee--------eeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCc
Q 014397 158 PVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEE--------GPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKT 228 (425)
Q Consensus 158 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~--------v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~ 228 (425)
......++|||+|||+++|+++|+++|++||.|++ |+|+.++.+++++|||||+|.+.++|++||+.+ +..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 44556789999999999999999999999999999 999999999999999999999999999999875 689
Q ss_pred cCCeEEEEEEcc
Q 014397 229 VDGKQLNCRLAD 240 (425)
Q Consensus 229 ~~gr~i~v~~a~ 240 (425)
|+|+.|.|++|+
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999874
No 130
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.7e-17 Score=130.81 Aligned_cols=87 Identities=32% Similarity=0.526 Sum_probs=78.9
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEE
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTN 144 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~ 144 (425)
......++|||+|||+++|+++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+. ...|.++.|.|.
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~v~ 88 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEEEE
Confidence 3455678899999999999999999999999999999999998999999999999999999999995 468999999999
Q ss_pred ecccCCCC
Q 014397 145 LAVAGNSG 152 (425)
Q Consensus 145 ~~~~~~~~ 152 (425)
++..+...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqg_A 89 LPNSKQSQ 96 (103)
T ss_dssp CCCTTCCC
T ss_pred ecCCCCcC
Confidence 99775543
No 131
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.72 E-value=1.4e-17 Score=134.64 Aligned_cols=87 Identities=30% Similarity=0.553 Sum_probs=80.1
Q ss_pred cccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceE
Q 014397 63 IADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVT 141 (425)
Q Consensus 63 ~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~ 141 (425)
........++|||+|||+++|+++|+++|++||+|.+|+++.++.+++++|||||+|.+.++|++||+.++ ..|.++.|
T Consensus 19 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 98 (108)
T 2jrs_A 19 LQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 98 (108)
T ss_dssp SCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred cccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34456678899999999999999999999999999999999999899999999999999999999999777 88999999
Q ss_pred EEEecccC
Q 014397 142 VTNLAVAG 149 (425)
Q Consensus 142 ~v~~~~~~ 149 (425)
.|.++..+
T Consensus 99 ~V~~a~~k 106 (108)
T 2jrs_A 99 KVGHVTER 106 (108)
T ss_dssp EEECSCSS
T ss_pred EEEEcccC
Confidence 99998654
No 132
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=5.6e-18 Score=127.99 Aligned_cols=76 Identities=22% Similarity=0.441 Sum_probs=73.2
Q ss_pred ceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEEEc
Q 014397 164 RKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA 239 (425)
Q Consensus 164 ~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~~a 239 (425)
++|||+|||+++|+++|+++|++||+|.+|.|+.++.+++++|||||+|.+.++|++|++.++..|+|++|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 4799999999999999999999999999999999999999999999999999999999999889999999999986
No 133
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=131.69 Aligned_cols=83 Identities=18% Similarity=0.254 Sum_probs=77.2
Q ss_pred cccceEEEeecCCcccHHHHHHHHhhcCCce-eeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeE----E
Q 014397 161 VSLRKIFVGNVPNDMSADKLLAHFACYGEIE-EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQ----L 234 (425)
Q Consensus 161 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~-~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~----i 234 (425)
...++|||+|||+++|+++|+++|++||.|. +|+|+.|+.+++++|||||+|.+.++|++||+.+ +..|+++. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4568999999999999999999999999999 9999999999999999999999999999999986 58999999 9
Q ss_pred EEEEcccCC
Q 014397 235 NCRLADNKK 243 (425)
Q Consensus 235 ~v~~a~~~~ 243 (425)
.|.+++...
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999987653
No 134
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=134.24 Aligned_cols=87 Identities=22% Similarity=0.394 Sum_probs=79.8
Q ss_pred CCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEE
Q 014397 157 NPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLN 235 (425)
Q Consensus 157 ~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~ 235 (425)
+......++|||+|||+++|+++|+++|++||.|++|.|+.++.+++++|||||+|.+.++|++||+.+ +..|+|+.|.
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 344556789999999999999999999999999999999999999999999999999999999999875 6899999999
Q ss_pred EEEcccCC
Q 014397 236 CRLADNKK 243 (425)
Q Consensus 236 v~~a~~~~ 243 (425)
|++++++.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99997753
No 135
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.5e-17 Score=131.69 Aligned_cols=85 Identities=19% Similarity=0.256 Sum_probs=77.9
Q ss_pred cccceEEEeecCCcccHHHHHHHHhhcCC-ceeeeee-ccCCCCCcceEEEEEeCCHHHHHHHHhcCC---CccCCeEEE
Q 014397 161 VSLRKIFVGNVPNDMSADKLLAHFACYGE-IEEGPLG-FDKQTGKPKGFALFVYKTAEGAQAALVDPI---KTVDGKQLN 235 (425)
Q Consensus 161 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~-v~~v~i~-~d~~~g~~kG~afV~F~~~~~A~~A~~~~~---~~~~gr~i~ 235 (425)
...++|||+|||+++|+++|+++|++||. |++|.|+ .++.+++++|||||+|.++++|++||+.++ ..|+|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 34589999999999999999999999998 9999998 888899999999999999999999999863 789999999
Q ss_pred EEEcccCCCC
Q 014397 236 CRLADNKKAK 245 (425)
Q Consensus 236 v~~a~~~~~~ 245 (425)
|.+++++...
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999876553
No 136
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.72 E-value=3e-17 Score=141.74 Aligned_cols=86 Identities=21% Similarity=0.338 Sum_probs=79.6
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEE
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVT 143 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v 143 (425)
......++|||+|||+++|+++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+.++ ..|.++.|.|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 344567899999999999999999999999999999999999999999999999999999999999877 8899999999
Q ss_pred EecccCC
Q 014397 144 NLAVAGN 150 (425)
Q Consensus 144 ~~~~~~~ 150 (425)
.++....
T Consensus 114 ~~a~~~~ 120 (156)
T 1h2v_Z 114 DWDAGFK 120 (156)
T ss_dssp EEESCCC
T ss_pred EECCCCC
Confidence 9997643
No 137
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.72 E-value=6.9e-18 Score=126.85 Aligned_cols=75 Identities=28% Similarity=0.495 Sum_probs=72.0
Q ss_pred eEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEEEc
Q 014397 165 KIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA 239 (425)
Q Consensus 165 ~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~~a 239 (425)
+|||+|||+++|+++|+++|++||+|.+|.|+.++.+++++|||||+|+++++|++|++.++..|+|+.|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999999999999999999999999999998789999999999875
No 138
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.2e-17 Score=130.82 Aligned_cols=83 Identities=23% Similarity=0.313 Sum_probs=76.8
Q ss_pred CcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEE
Q 014397 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRL 238 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~ 238 (425)
....++|||+|||+++|+++|+++|++||.|+++.++.++.+++++|||||+|.++++|++||+.+ +..|+++.|.|++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 345688999999999999999999999999999999999999999999999999999999999886 4899999999999
Q ss_pred cccC
Q 014397 239 ADNK 242 (425)
Q Consensus 239 a~~~ 242 (425)
++.+
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8753
No 139
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.72 E-value=2.5e-17 Score=130.91 Aligned_cols=83 Identities=24% Similarity=0.380 Sum_probs=77.3
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-C
Q 014397 64 ADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEE--------AVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-K 134 (425)
Q Consensus 64 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~ 134 (425)
.......++|||+|||+++|+++|+++|++||.|.+ |+++.++.+++++|||||+|.+.++|++||+.++ .
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 345667899999999999999999999999999999 9999999899999999999999999999999777 8
Q ss_pred CcCCceEEEEec
Q 014397 135 KIDGRVTVTNLA 146 (425)
Q Consensus 135 ~~~gr~~~v~~~ 146 (425)
.+.++.|.|.++
T Consensus 87 ~~~g~~l~V~~A 98 (99)
T 2la6_A 87 EFSGNPIKVSFA 98 (99)
T ss_dssp BSSSSBCEEEEC
T ss_pred EeCCcEEEEEec
Confidence 899999999886
No 140
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.1e-17 Score=126.32 Aligned_cols=76 Identities=38% Similarity=0.729 Sum_probs=73.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEEec
Q 014397 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLA 146 (425)
Q Consensus 71 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~~~ 146 (425)
++|||+|||+++|+++|+++|++||+|.+|+++.++.+++++|||||+|.+.++|++|++.++..+.++.+.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 4799999999999999999999999999999999998999999999999999999999999999999999999886
No 141
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.72 E-value=1.9e-17 Score=130.77 Aligned_cols=81 Identities=22% Similarity=0.474 Sum_probs=76.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEeccc
Q 014397 70 QRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAVA 148 (425)
Q Consensus 70 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~~ 148 (425)
+++|||+|||+++|+++|+++|++||.|++|+++.++.+++++|||||+|.+.++|++||+.++ ..+.++.|.|.++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 5789999999999999999999999999999999999899999999999999999999998877 889999999999976
Q ss_pred CC
Q 014397 149 GN 150 (425)
Q Consensus 149 ~~ 150 (425)
..
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 44
No 142
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=134.15 Aligned_cols=83 Identities=13% Similarity=0.143 Sum_probs=75.0
Q ss_pred CCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEEE
Q 014397 159 VDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRL 238 (425)
Q Consensus 159 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~~ 238 (425)
......+|||+|||+++|+++|+++|++| .|.+|+|+.|+. ++++|||||+|+++++|++||+.+...|++|.|.|..
T Consensus 12 ~~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~ 89 (109)
T 2dnn_A 12 INPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSP 89 (109)
T ss_dssp CCHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEE
Confidence 34456799999999999999999999999 899999999975 9999999999999999999997667999999999998
Q ss_pred cccCC
Q 014397 239 ADNKK 243 (425)
Q Consensus 239 a~~~~ 243 (425)
++.+.
T Consensus 90 a~~~~ 94 (109)
T 2dnn_A 90 ATERQ 94 (109)
T ss_dssp CCHHH
T ss_pred CCccc
Confidence 86543
No 143
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.72 E-value=3.2e-17 Score=138.63 Aligned_cols=88 Identities=25% Similarity=0.406 Sum_probs=81.0
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEE
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVT 143 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v 143 (425)
..+...++|||+|||+++|+++|+++|+.||+|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|.++.|.|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 445667899999999999999999999999999999999999999999999999999999999999887 8899999999
Q ss_pred EecccCCCC
Q 014397 144 NLAVAGNSG 152 (425)
Q Consensus 144 ~~~~~~~~~ 152 (425)
.++......
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 999876543
No 144
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.8e-17 Score=131.95 Aligned_cols=80 Identities=21% Similarity=0.118 Sum_probs=71.0
Q ss_pred CcccceEEEeecCC-cccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCC---CccCCeEEE
Q 014397 160 DVSLRKIFVGNVPN-DMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPI---KTVDGKQLN 235 (425)
Q Consensus 160 ~~~~~~l~V~nL~~-~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~---~~~~gr~i~ 235 (425)
..+.++|||+|||+ ++|+++|+++|++||.|++|.|+++ ++||||+|+++++|++||+.++ ..|+|++|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 34678999999999 9999999999999999999999876 5899999999999999999853 469999999
Q ss_pred EEEcccCCCC
Q 014397 236 CRLADNKKAK 245 (425)
Q Consensus 236 v~~a~~~~~~ 245 (425)
|.+++.++..
T Consensus 86 V~~a~~~~~~ 95 (102)
T 1x4d_A 86 VHLSQKYKRI 95 (102)
T ss_dssp EEEECCCTTS
T ss_pred EEECCCCCCC
Confidence 9999865443
No 145
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.71 E-value=6.1e-18 Score=134.77 Aligned_cols=80 Identities=23% Similarity=0.319 Sum_probs=75.6
Q ss_pred CCCeEEEcCCCC------CCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCC-ce
Q 014397 69 TQRKLFIRGLGW------DTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDG-RV 140 (425)
Q Consensus 69 ~~~~lfV~nLp~------~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~g-r~ 140 (425)
..++|||+|||+ ++++++|+++|++||+|.+|+|++++.|++++|||||+|.+.++|++||+.++ ..|.+ +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 467899999999 99999999999999999999999999999999999999999999999999877 88998 99
Q ss_pred EEEEeccc
Q 014397 141 TVTNLAVA 148 (425)
Q Consensus 141 ~~v~~~~~ 148 (425)
|.|.++.+
T Consensus 85 l~V~~a~~ 92 (100)
T 3ns6_A 85 LFLYTMKD 92 (100)
T ss_dssp CEEEESHH
T ss_pred EEEEECch
Confidence 99999865
No 146
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.71 E-value=1e-17 Score=140.30 Aligned_cols=88 Identities=26% Similarity=0.299 Sum_probs=79.1
Q ss_pred CCCCcccceEEEeecCCcccHHHHHHHHhhcCCcee--eeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CC----cc
Q 014397 157 NPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEE--GPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IK----TV 229 (425)
Q Consensus 157 ~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~--v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~----~~ 229 (425)
+......++|||+|||+++|+++|+++|++||.|+. |+|++|+.++++||||||+|++. +|++||+.+ +. .|
T Consensus 17 ~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 17 PSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 344466789999999999999999999999999976 99999999999999999999999 999999996 46 89
Q ss_pred CCeEEEEEEcccCCCC
Q 014397 230 DGKQLNCRLADNKKAK 245 (425)
Q Consensus 230 ~gr~i~v~~a~~~~~~ 245 (425)
+|+.|.|++++.+..+
T Consensus 96 ~gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 96 DGKTINVEFAKGSKRD 111 (131)
T ss_dssp GGCCCCCEECCCSCCC
T ss_pred CCEEEEEEECCCCCCC
Confidence 9999999999876543
No 147
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.3e-17 Score=133.96 Aligned_cols=87 Identities=36% Similarity=0.605 Sum_probs=79.5
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEE
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTN 144 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~ 144 (425)
..+...++|||+|||+++|+++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+.....|.++.|.|.
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPK 90 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEE
Confidence 34567889999999999999999999999999999999999989999999999999999999999994488999999999
Q ss_pred ecccCCC
Q 014397 145 LAVAGNS 151 (425)
Q Consensus 145 ~~~~~~~ 151 (425)
++..+..
T Consensus 91 ~a~~~~~ 97 (105)
T 2dh8_A 91 PCTPRGM 97 (105)
T ss_dssp CSCCSSC
T ss_pred EccCCCC
Confidence 9876543
No 148
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.1e-17 Score=131.29 Aligned_cols=86 Identities=26% Similarity=0.422 Sum_probs=78.5
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEE
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVT 143 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v 143 (425)
..+...++|||+|||+++|+++|+++|++||+|++|+|+.+ ++++++||||+|.+.++|++||+.++ ..|.++.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34557889999999999999999999999999999999998 89999999999999999999999877 8899999999
Q ss_pred EecccCCCC
Q 014397 144 NLAVAGNSG 152 (425)
Q Consensus 144 ~~~~~~~~~ 152 (425)
.++......
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2d9p_A 88 ALAQRKEER 96 (103)
T ss_dssp EECSSCCCC
T ss_pred EEecccccC
Confidence 999775543
No 149
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.1e-17 Score=134.13 Aligned_cols=87 Identities=34% Similarity=0.568 Sum_probs=79.8
Q ss_pred CCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEE
Q 014397 159 VDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCR 237 (425)
Q Consensus 159 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~ 237 (425)
.+...++|||+|||+++|+++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++||+.+ +..|+|+.|.|+
T Consensus 4 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 83 (104)
T 1p1t_A 4 VDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 83 (104)
T ss_dssp SHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEE
T ss_pred cCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 4456789999999999999999999999999999999999999999999999999999999999876 589999999999
Q ss_pred EcccCCCC
Q 014397 238 LADNKKAK 245 (425)
Q Consensus 238 ~a~~~~~~ 245 (425)
++..+..+
T Consensus 84 ~a~~~~~~ 91 (104)
T 1p1t_A 84 NAASEKNK 91 (104)
T ss_dssp ETTCTTHH
T ss_pred eCCCccch
Confidence 99876543
No 150
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=3.2e-17 Score=131.41 Aligned_cols=85 Identities=28% Similarity=0.378 Sum_probs=77.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhh-cCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CC-cCCceEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSA-YGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KK-IDGRVTV 142 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~-~~gr~~~ 142 (425)
.....++|||+|||+++|+++|+++|++ ||+|++|+|+.++ +++++|||||+|.+.++|++||+.++ .. |.++.|.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3456788999999999999999999999 9999999999998 99999999999999999999999888 67 9999999
Q ss_pred EEecccCCC
Q 014397 143 TNLAVAGNS 151 (425)
Q Consensus 143 v~~~~~~~~ 151 (425)
|.++.....
T Consensus 84 v~~a~~~~~ 92 (104)
T 2dhg_A 84 LSVAIPKAS 92 (104)
T ss_dssp CCBCCCCCS
T ss_pred EEEccCCCc
Confidence 999876544
No 151
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.3e-17 Score=131.89 Aligned_cols=83 Identities=17% Similarity=0.291 Sum_probs=74.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEEe
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNL 145 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~~ 145 (425)
.....++|||+|||+++|+++|+++|++||.| +|+|+.++ +++++|||||+|.++++|++||+.....|.+|.|.|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEE
Confidence 44567899999999999999999999999954 99999997 89999999999999999999997644899999999988
Q ss_pred cccCC
Q 014397 146 AVAGN 150 (425)
Q Consensus 146 ~~~~~ 150 (425)
+....
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 76543
No 152
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.71 E-value=1.8e-17 Score=136.08 Aligned_cols=83 Identities=22% Similarity=0.316 Sum_probs=76.7
Q ss_pred CCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEE
Q 014397 158 PVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNC 236 (425)
Q Consensus 158 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v 236 (425)
......++|||+|||+++|+++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+.+ +..|++++|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999986 68999999999
Q ss_pred EEcc
Q 014397 237 RLAD 240 (425)
Q Consensus 237 ~~a~ 240 (425)
++++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9874
No 153
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.6e-17 Score=132.33 Aligned_cols=81 Identities=16% Similarity=0.203 Sum_probs=72.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC---CCcCCceEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS---KKIDGRVTV 142 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~---~~~~gr~~~ 142 (425)
.+...++|||+|||+++||++|+++|++||+|++|+|+++ ||||||+|++.++|++||+.++ ..|.++.|.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4567889999999999999999999999999999999875 6899999999999999999653 579999999
Q ss_pred EEecccCCCC
Q 014397 143 TNLAVAGNSG 152 (425)
Q Consensus 143 v~~~~~~~~~ 152 (425)
|.++..+...
T Consensus 86 V~~A~~~~~~ 95 (105)
T 1sjq_A 86 IQFSNHKELK 95 (105)
T ss_dssp BCCCSSSSCC
T ss_pred EEEcCCCCCC
Confidence 9998765443
No 154
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.71 E-value=1.4e-17 Score=129.13 Aligned_cols=83 Identities=18% Similarity=0.374 Sum_probs=76.1
Q ss_pred ccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCC-cceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEc
Q 014397 162 SLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGK-PKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLA 239 (425)
Q Consensus 162 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~-~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a 239 (425)
..++|||+|||+++|+++|+++|++||.|.+|.|+.++.++. ++|||||+|.+.++|++|++.+ +..|+|+.|.|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 357899999999999999999999999999999999987766 8999999999999999999974 69999999999999
Q ss_pred ccCCC
Q 014397 240 DNKKA 244 (425)
Q Consensus 240 ~~~~~ 244 (425)
.+...
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
No 155
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.71 E-value=2e-17 Score=138.08 Aligned_cols=86 Identities=26% Similarity=0.490 Sum_probs=79.6
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEE
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVT 143 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v 143 (425)
..+...++|||+|||+++|+++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+.++ ..|.++.|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345678899999999999999999999999999999999999999999999999999999999999877 8899999999
Q ss_pred EecccCC
Q 014397 144 NLAVAGN 150 (425)
Q Consensus 144 ~~~~~~~ 150 (425)
.++..+.
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9987643
No 156
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.8e-17 Score=133.48 Aligned_cols=86 Identities=22% Similarity=0.288 Sum_probs=77.0
Q ss_pred CCcccceEEEeecCCcccHHHHH---HHHhhcCCceeeeeeccCCCC---CcceEEEEEeCCHHHHHHHHhcC-CCccCC
Q 014397 159 VDVSLRKIFVGNVPNDMSADKLL---AHFACYGEIEEGPLGFDKQTG---KPKGFALFVYKTAEGAQAALVDP-IKTVDG 231 (425)
Q Consensus 159 ~~~~~~~l~V~nL~~~~te~~L~---~~F~~~G~v~~v~i~~d~~~g---~~kG~afV~F~~~~~A~~A~~~~-~~~~~g 231 (425)
.....++|||+|||+++++++|+ ++|++||+|++|.|+.++.++ +++|||||+|+++++|++||+.+ +..|+|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34456899999999999999999 999999999999999987754 56699999999999999999985 689999
Q ss_pred eEEEEEEcccCCC
Q 014397 232 KQLNCRLADNKKA 244 (425)
Q Consensus 232 r~i~v~~a~~~~~ 244 (425)
++|.|.+++++..
T Consensus 91 r~l~V~~a~~k~~ 103 (111)
T 2cpi_A 91 RTLKASLGTTKYC 103 (111)
T ss_dssp EEEEEESCCCCSC
T ss_pred EEEEEEecccccc
Confidence 9999999987764
No 157
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=4e-17 Score=130.68 Aligned_cols=84 Identities=19% Similarity=0.344 Sum_probs=76.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTN 144 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~ 144 (425)
.+...++|||+|||+++|+++|+++|++|+ |++|+|+.++.+++++|||||+|.+.++|++|| .++ ..|.++.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 455678999999999999999999999996 999999999999999999999999999999999 555 88999999999
Q ss_pred ecccCCC
Q 014397 145 LAVAGNS 151 (425)
Q Consensus 145 ~~~~~~~ 151 (425)
++.....
T Consensus 89 ~a~~~~~ 95 (103)
T 2dng_A 89 IAEGRKQ 95 (103)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9976543
No 158
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.71 E-value=1.9e-17 Score=142.68 Aligned_cols=81 Identities=19% Similarity=0.304 Sum_probs=75.7
Q ss_pred ccceEEEeecCCcccHHHHHHHHhhcC--CceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEE
Q 014397 162 SLRKIFVGNVPNDMSADKLLAHFACYG--EIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRL 238 (425)
Q Consensus 162 ~~~~l~V~nL~~~~te~~L~~~F~~~G--~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~ 238 (425)
..++|||+|||+++|+++|+++|++|| .|.+|+|+.|+.+++++|||||+|.+.++|++||+.+ +..|+|+.|.|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 9999999999999999999999999999999999996 5999999999999
Q ss_pred cccC
Q 014397 239 ADNK 242 (425)
Q Consensus 239 a~~~ 242 (425)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9654
No 159
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.9e-17 Score=129.00 Aligned_cols=82 Identities=17% Similarity=0.136 Sum_probs=74.3
Q ss_pred cccceEEEeecCCcccHHHHH----HHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEE
Q 014397 161 VSLRKIFVGNVPNDMSADKLL----AHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLN 235 (425)
Q Consensus 161 ~~~~~l~V~nL~~~~te~~L~----~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~ 235 (425)
...++|||+|||+++++++|+ ++|++||+|++|+|+.|+.+ ++||||+|+++++|++||+.+ +..|+|++|.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 345789999999999999999 99999999999999999766 889999999999999999985 5899999999
Q ss_pred EEEcccCCCC
Q 014397 236 CRLADNKKAK 245 (425)
Q Consensus 236 v~~a~~~~~~ 245 (425)
|++++++..+
T Consensus 84 V~~a~~~~~~ 93 (96)
T 2dgx_A 84 VSLATGASGP 93 (96)
T ss_dssp EEECCCSSCC
T ss_pred EEEcCCCCCC
Confidence 9999776543
No 160
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.6e-17 Score=129.11 Aligned_cols=83 Identities=13% Similarity=0.161 Sum_probs=73.9
Q ss_pred CCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC---CCccCCeEE
Q 014397 158 PVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP---IKTVDGKQL 234 (425)
Q Consensus 158 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~---~~~~~gr~i 234 (425)
....+.++|||+|||+++|+++|+++|++||.|++|.|+.+ ||||||+|++.++|++|++.+ ...|+|++|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 34456789999999999999999999999999999999865 799999999999999999864 467999999
Q ss_pred EEEEcccCCCCC
Q 014397 235 NCRLADNKKAKP 246 (425)
Q Consensus 235 ~v~~a~~~~~~~ 246 (425)
.|.+++.+..+.
T Consensus 84 ~V~~a~~~~~~~ 95 (101)
T 2cq1_A 84 YIQYSNHKELKT 95 (101)
T ss_dssp EEEECSCSSCCC
T ss_pred EEEEcCcccCcC
Confidence 999998776654
No 161
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.71 E-value=2.3e-17 Score=129.91 Aligned_cols=82 Identities=23% Similarity=0.365 Sum_probs=75.4
Q ss_pred CCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEE
Q 014397 159 VDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCR 237 (425)
Q Consensus 159 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~ 237 (425)
.....++|||+|||+++++++|+++|++||+|++|.|+.++. ++++|||||+|.++++|++||+.+ +..|+++.|.|+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 445668999999999999999999999999999999999975 999999999999999999999975 689999999999
Q ss_pred Eccc
Q 014397 238 LADN 241 (425)
Q Consensus 238 ~a~~ 241 (425)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 8863
No 162
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.6e-17 Score=134.03 Aligned_cols=87 Identities=25% Similarity=0.363 Sum_probs=79.7
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCee--------EEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CC
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELE--------EAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KK 135 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~ 135 (425)
..+...++|||+|||+++|+++|+++|++||.|. .|+|+.++.+++++|||||+|.+.++|++||+.++ ..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3456788999999999999999999999999999 69999998899999999999999999999999877 88
Q ss_pred cCCceEEEEecccCCC
Q 014397 136 IDGRVTVTNLAVAGNS 151 (425)
Q Consensus 136 ~~gr~~~v~~~~~~~~ 151 (425)
|.++.|.|.++.....
T Consensus 90 ~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPP 105 (113)
T ss_dssp ETTEECEEECSSCCCC
T ss_pred cCCCEEEEEECCCCCC
Confidence 9999999999877554
No 163
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=5.9e-17 Score=126.56 Aligned_cols=82 Identities=10% Similarity=0.164 Sum_probs=75.4
Q ss_pred CcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEEEc
Q 014397 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA 239 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~~a 239 (425)
....++|||+|||+++|+++|+++|++| .|.+|+|+.+ .+++++|||||+|++.++|++||+.++..|+++.|.|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEEC
Confidence 3456899999999999999999999999 9999999999 8999999999999999999999993358999999999999
Q ss_pred ccCC
Q 014397 240 DNKK 243 (425)
Q Consensus 240 ~~~~ 243 (425)
+.+.
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 7763
No 164
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.71 E-value=2.7e-17 Score=150.91 Aligned_cols=80 Identities=21% Similarity=0.358 Sum_probs=75.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEe
Q 014397 69 TQRKLFIRGLGWDTTTEGLRSIFSAYG--ELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNL 145 (425)
Q Consensus 69 ~~~~lfV~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~ 145 (425)
..++|||+|||+++|+++|+++|++|| +|++|+|++|+.++++||||||+|.+.++|++||+.++ ..|.++.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 577899999999999999999999999 99999999999999999999999999999999999888 899999999998
Q ss_pred ccc
Q 014397 146 AVA 148 (425)
Q Consensus 146 ~~~ 148 (425)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 854
No 165
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.71 E-value=3.5e-17 Score=135.99 Aligned_cols=89 Identities=21% Similarity=0.387 Sum_probs=81.2
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEE
Q 014397 64 ADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTV 142 (425)
Q Consensus 64 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~ 142 (425)
.......++|||+|||+++|+++|+++|++||.|++|.|+.++.+++++|||||+|.+.++|++||+.++ ..|.++.|.
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 3455667899999999999999999999999999999999999899999999999999999999998777 899999999
Q ss_pred EEecccCCCC
Q 014397 143 TNLAVAGNSG 152 (425)
Q Consensus 143 v~~~~~~~~~ 152 (425)
|.++......
T Consensus 96 v~~a~~~~~~ 105 (126)
T 3ex7_B 96 VDWCFVRGPP 105 (126)
T ss_dssp EEESEESSSC
T ss_pred EEEecCCCCC
Confidence 9999765543
No 166
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.8e-17 Score=131.81 Aligned_cols=84 Identities=17% Similarity=0.381 Sum_probs=76.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCC-CCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKAT-GKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVT 143 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~-g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v 143 (425)
.....++|||+|||+++|+++|+++|+.|| |++|+|+.++.+ ++++|||||+|.+.++|++|| .++ ..|.++.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 345678999999999999999999999999 999999999887 999999999999999999999 655 8899999999
Q ss_pred EecccCCC
Q 014397 144 NLAVAGNS 151 (425)
Q Consensus 144 ~~~~~~~~ 151 (425)
.++.....
T Consensus 89 ~~a~~~~~ 96 (104)
T 1wi8_A 89 DVADQAQD 96 (104)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99977554
No 167
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.70 E-value=3.1e-17 Score=129.22 Aligned_cols=82 Identities=24% Similarity=0.405 Sum_probs=75.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTN 144 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~ 144 (425)
.+...++|||+|||+++|+++|+++|++||+|++|+|+.++. ++++|||||+|.+.++|++||+.++ ..+.++.|.|.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 445678999999999999999999999999999999999974 9999999999999999999999777 88999999999
Q ss_pred eccc
Q 014397 145 LAVA 148 (425)
Q Consensus 145 ~~~~ 148 (425)
++..
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 8753
No 168
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6e-17 Score=129.94 Aligned_cols=84 Identities=21% Similarity=0.290 Sum_probs=75.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEE-AVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTN 144 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~-v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~ 144 (425)
.....++|||+|||+++|+++|+++|++||.|.+ |+|+.+ .+++++|||||+|.++++|++||+.....+.+|.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 89 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEE
Confidence 3456789999999999999999999999999998 888888 69999999999999999999999995589999999998
Q ss_pred ecccCC
Q 014397 145 LAVAGN 150 (425)
Q Consensus 145 ~~~~~~ 150 (425)
++....
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 886543
No 169
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.70 E-value=4.8e-17 Score=126.39 Aligned_cols=78 Identities=21% Similarity=0.426 Sum_probs=73.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEeccc
Q 014397 70 QRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAVA 148 (425)
Q Consensus 70 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~~ 148 (425)
.++|||+|||+++|+++|+++|++||+|.+|+++.++.+++++|||||+|.+.++|++|| .++ ..+.++.|.|.++..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 478999999999999999999999999999999999889999999999999999999999 555 899999999999865
No 170
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=7.4e-17 Score=131.51 Aligned_cols=84 Identities=24% Similarity=0.318 Sum_probs=77.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTN 144 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~ 144 (425)
.....++|||+|||+++|+++|+++|++||+|++|+|+.++ +++++|||||+|.+.++|++||+.++ ..|.++.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 44567899999999999999999999999999999999997 69999999999999999999999777 88999999999
Q ss_pred ecccCC
Q 014397 145 LAVAGN 150 (425)
Q Consensus 145 ~~~~~~ 150 (425)
++....
T Consensus 90 ~a~~~~ 95 (114)
T 2do0_A 90 MDERAL 95 (114)
T ss_dssp ECSCCC
T ss_pred EcccCC
Confidence 986543
No 171
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.5e-17 Score=134.61 Aligned_cols=88 Identities=24% Similarity=0.316 Sum_probs=77.7
Q ss_pred CcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEE
Q 014397 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRL 238 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~ 238 (425)
....++|||+|||+++|+++|+++|++||.|+.|.+..+..+++++|||||+|.+.++|++||+.+ +..|+++.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 345689999999999999999999999999977766655568999999999999999999999986 5899999999999
Q ss_pred cccCCCCCC
Q 014397 239 ADNKKAKPM 247 (425)
Q Consensus 239 a~~~~~~~~ 247 (425)
++.+..+..
T Consensus 102 a~~~~~~~~ 110 (115)
T 2cpx_A 102 GKNKKQRSS 110 (115)
T ss_dssp CCCCSCCCC
T ss_pred ccCCCCCCC
Confidence 988766543
No 172
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.70 E-value=2.6e-17 Score=123.68 Aligned_cols=75 Identities=28% Similarity=0.574 Sum_probs=70.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEEec
Q 014397 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLA 146 (425)
Q Consensus 72 ~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~~~ 146 (425)
+|||+|||+++|+++|+++|++||+|.+|+++.++.+++++|||||+|.+.++|++|++.....+.++.+.|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 599999999999999999999999999999999988999999999999999999999995458999999999874
No 173
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.70 E-value=2.8e-17 Score=135.05 Aligned_cols=83 Identities=8% Similarity=0.116 Sum_probs=75.9
Q ss_pred CcccceEEEeecCCcccHHHHHHHHhhcCC---ceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEE
Q 014397 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGE---IEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNC 236 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~---v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v 236 (425)
....++|||+|||+++|+++|+++|++||. |+.|+|+.++. ++++|||||+|+++++|++||+.+...|+++.|.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEE
Confidence 445688999999999999999999999999 89999999976 99999999999999999999996578999999999
Q ss_pred EEcccCC
Q 014397 237 RLADNKK 243 (425)
Q Consensus 237 ~~a~~~~ 243 (425)
.+++.++
T Consensus 93 ~~a~~~~ 99 (118)
T 2db1_A 93 FKSHRTE 99 (118)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9986553
No 174
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.70 E-value=1.6e-17 Score=130.86 Aligned_cols=80 Identities=23% Similarity=0.309 Sum_probs=74.1
Q ss_pred ccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEcc
Q 014397 162 SLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLAD 240 (425)
Q Consensus 162 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a~ 240 (425)
..++|||+|||+++|+++|+++|++||.|+++.++.++.+++++|||||+|.++++|++||+.+ +..|++++|.|++++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 4589999999999999999999999999999999999999999999999999999999999974 689999999999875
Q ss_pred c
Q 014397 241 N 241 (425)
Q Consensus 241 ~ 241 (425)
.
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 175
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.8e-17 Score=131.38 Aligned_cols=84 Identities=15% Similarity=0.280 Sum_probs=77.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTN 144 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~ 144 (425)
.....++|||+|||+++|+++|+++|++||.|++++++.++.+++++|||||+|.+.++|++||+.++ ..|.++.|.|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 44567889999999999999999999999999999999998999999999999999999999999888 88999999999
Q ss_pred ecccC
Q 014397 145 LAVAG 149 (425)
Q Consensus 145 ~~~~~ 149 (425)
++...
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98653
No 176
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.1e-17 Score=133.30 Aligned_cols=83 Identities=17% Similarity=0.224 Sum_probs=74.4
Q ss_pred CCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCC---CccCCeEEE
Q 014397 159 VDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPI---KTVDGKQLN 235 (425)
Q Consensus 159 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~---~~~~gr~i~ 235 (425)
...+.++|||+|||+++|+++|+++|++||.|++|.|+.+ ||||||+|++.++|++||+.++ ..|+|++|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3455789999999999999999999999999999999976 7999999999999999999753 679999999
Q ss_pred EEEcccCCCCCC
Q 014397 236 CRLADNKKAKPM 247 (425)
Q Consensus 236 v~~a~~~~~~~~ 247 (425)
|.+++.+..+..
T Consensus 101 V~~a~~k~~~~~ 112 (119)
T 2ad9_A 101 IQFSNHKELKTD 112 (119)
T ss_dssp EEECSSSSCCCC
T ss_pred EEEccCCCCCcc
Confidence 999988776653
No 177
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.70 E-value=2.4e-17 Score=135.39 Aligned_cols=81 Identities=31% Similarity=0.447 Sum_probs=76.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTN 144 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~ 144 (425)
.....++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|.++.|.|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45567899999999999999999999999999999999998899999999999999999999999887 88999999998
Q ss_pred ec
Q 014397 145 LA 146 (425)
Q Consensus 145 ~~ 146 (425)
++
T Consensus 116 ~a 117 (118)
T 2khc_A 116 LK 117 (118)
T ss_dssp EC
T ss_pred ec
Confidence 86
No 178
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.70 E-value=3.4e-17 Score=131.94 Aligned_cols=82 Identities=21% Similarity=0.327 Sum_probs=76.1
Q ss_pred CCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEE
Q 014397 158 PVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNC 236 (425)
Q Consensus 158 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v 236 (425)
......++|||+|||+++|+++|+++|++||.|++|.|+.++ +++++|||||+|.+.++|++||+.+ +..|+|+.|.|
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 344567899999999999999999999999999999999998 9999999999999999999999985 69999999999
Q ss_pred EEcc
Q 014397 237 RLAD 240 (425)
Q Consensus 237 ~~a~ 240 (425)
++++
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9985
No 179
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.9e-17 Score=132.73 Aligned_cols=82 Identities=28% Similarity=0.567 Sum_probs=76.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecc
Q 014397 69 TQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAV 147 (425)
Q Consensus 69 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~ 147 (425)
..++|||+|||+++|+++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|++||+.++ ..|.++.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45789999999999999999999999999999999999899999999999999999999999877 88999999999987
Q ss_pred cCC
Q 014397 148 AGN 150 (425)
Q Consensus 148 ~~~ 150 (425)
...
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 543
No 180
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.1e-16 Score=129.39 Aligned_cols=80 Identities=14% Similarity=0.140 Sum_probs=72.2
Q ss_pred CcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCC-----eE
Q 014397 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDG-----KQ 233 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~g-----r~ 233 (425)
....++|||+|||+++|+++|+++|++||+|++|.|+.+ |||||+|++.++|++||+.+ +..|++ +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 345689999999999999999999999999999999876 89999999999999999986 588999 99
Q ss_pred EEEEEcccCCCCC
Q 014397 234 LNCRLADNKKAKP 246 (425)
Q Consensus 234 i~v~~a~~~~~~~ 246 (425)
|.|++++++....
T Consensus 85 i~V~~a~~~~~~~ 97 (108)
T 1x4c_A 85 IRVKVDGPRSPSY 97 (108)
T ss_dssp EEEEESSCCSCCC
T ss_pred EEEEeCCCCCCCC
Confidence 9999998865443
No 181
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.7e-17 Score=128.96 Aligned_cols=85 Identities=26% Similarity=0.371 Sum_probs=76.2
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEE
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVT 143 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v 143 (425)
..+...++|||+|||+++|+++|+++|++||+|++|+|+.++.+ ++|||||+|.+.++|++||+.++ ..|.++.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 34567789999999999999999999999999999999998543 78999999999999999999777 8899999999
Q ss_pred EecccCCC
Q 014397 144 NLAVAGNS 151 (425)
Q Consensus 144 ~~~~~~~~ 151 (425)
.++.....
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqi_A 88 NWATTPSS 95 (103)
T ss_dssp EECCCTTC
T ss_pred EECCCCcc
Confidence 99977544
No 182
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.1e-16 Score=129.33 Aligned_cols=85 Identities=16% Similarity=0.240 Sum_probs=77.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEe-ecCCCCCcccEEEEEecchHHHHHHHhcCC---CCcCCceE
Q 014397 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGE-LEEAVVI-LDKATGKSKGYGFITFKHIDGAMLALKEPS---KKIDGRVT 141 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~-i~~v~i~-~~~~~g~skG~aFV~F~~~e~A~~Al~~~~---~~~~gr~~ 141 (425)
....++|||+|||+++|+++|+++|++||. |++|+++ .++.+++++|||||+|.+.++|++||+.++ ..+.++.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 346789999999999999999999999998 9999998 788889999999999999999999999885 68999999
Q ss_pred EEEecccCCC
Q 014397 142 VTNLAVAGNS 151 (425)
Q Consensus 142 ~v~~~~~~~~ 151 (425)
.|.++.....
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999977554
No 183
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=5.9e-17 Score=129.39 Aligned_cols=85 Identities=22% Similarity=0.335 Sum_probs=75.8
Q ss_pred CCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEE
Q 014397 158 PVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNC 236 (425)
Q Consensus 158 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v 236 (425)
......++|||+|||+++|+++|+++|++| ..|.|+.++.+++++|||||+|+++++|++||+.+ +..|+++.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 445567899999999999999999999977 47888888889999999999999999999999975 68999999999
Q ss_pred EEcccCCCC
Q 014397 237 RLADNKKAK 245 (425)
Q Consensus 237 ~~a~~~~~~ 245 (425)
++++++...
T Consensus 87 ~~a~~~~~~ 95 (102)
T 2fc8_A 87 DWAKPKGEG 95 (102)
T ss_dssp EECCCCCSS
T ss_pred EEecCCCCC
Confidence 999876553
No 184
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.6e-17 Score=128.68 Aligned_cols=86 Identities=24% Similarity=0.453 Sum_probs=77.3
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEE
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVT 143 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v 143 (425)
..+...++|||+|||+++|+++|+++|++||+|++|+|+.++. .+++||||+|.+.++|++||+.++ ..|.++.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 4566789999999999999999999999999999999999863 389999999999999999999877 8899999999
Q ss_pred EecccCCCC
Q 014397 144 NLAVAGNSG 152 (425)
Q Consensus 144 ~~~~~~~~~ 152 (425)
.++......
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cq3_A 88 NNATARVMT 96 (103)
T ss_dssp EECCSSCCC
T ss_pred EEcccCCCC
Confidence 999776543
No 185
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.70 E-value=4.1e-17 Score=142.24 Aligned_cols=86 Identities=21% Similarity=0.378 Sum_probs=78.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTN 144 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~ 144 (425)
.....++|||+|||+++|+++|+++|++||+|.+|.|+.++.+++++|||||+|.+.++|++||+.++ ..|.++.|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567789999999999999999999999999999999999999999999999999999999999877 88999999999
Q ss_pred ecccCCC
Q 014397 145 LAVAGNS 151 (425)
Q Consensus 145 ~~~~~~~ 151 (425)
++.....
T Consensus 148 ~a~~~~~ 154 (165)
T 1rk8_A 148 WCFVKGP 154 (165)
T ss_dssp ESEECC-
T ss_pred EecCCCC
Confidence 9976543
No 186
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=8.5e-17 Score=128.23 Aligned_cols=84 Identities=19% Similarity=0.309 Sum_probs=73.8
Q ss_pred CCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEE
Q 014397 158 PVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNC 236 (425)
Q Consensus 158 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v 236 (425)
......++|||+|||+++|+++|+++|++||.| +|+.+ .+++++|||||+|.++++|++||+.+ +..|+++.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 85 (101)
T 2fc9_A 10 TWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 85 (101)
T ss_dssp CCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEE
Confidence 345567999999999999999999999999977 56666 68999999999999999999999976 58999999999
Q ss_pred EEcccCCCC
Q 014397 237 RLADNKKAK 245 (425)
Q Consensus 237 ~~a~~~~~~ 245 (425)
++++.+...
T Consensus 86 ~~a~~~~~~ 94 (101)
T 2fc9_A 86 ELQGPRGSP 94 (101)
T ss_dssp EECSSCCCC
T ss_pred EEcCCCCCC
Confidence 999876543
No 187
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.70 E-value=4e-17 Score=127.74 Aligned_cols=84 Identities=23% Similarity=0.355 Sum_probs=76.2
Q ss_pred CcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEE
Q 014397 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRL 238 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~ 238 (425)
....++|||+|||+++|+++|+++|++||.|++|.|+.+ ++++++||||+|.+.++|++||+.+ +..|+++.|.|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345689999999999999999999999999999999874 8899999999999999999999985 6889999999999
Q ss_pred cccCCCC
Q 014397 239 ADNKKAK 245 (425)
Q Consensus 239 a~~~~~~ 245 (425)
++.....
T Consensus 83 a~~~~~~ 89 (92)
T 2dgv_A 83 DRNASGP 89 (92)
T ss_dssp CSCCSSC
T ss_pred cCCCCCC
Confidence 9876543
No 188
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.70 E-value=4.2e-17 Score=140.56 Aligned_cols=80 Identities=20% Similarity=0.330 Sum_probs=75.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEe
Q 014397 69 TQRKLFIRGLGWDTTTEGLRSIFSAYG--ELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNL 145 (425)
Q Consensus 69 ~~~~lfV~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~ 145 (425)
..++|||+|||+++|+++|+++|+.|| .|.+|+|+.|+.+++++|||||+|.+.++|++||+.++ ..|.++.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 99999999999999999999999999999999999988 899999999998
Q ss_pred ccc
Q 014397 146 AVA 148 (425)
Q Consensus 146 ~~~ 148 (425)
+..
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 854
No 189
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.70 E-value=5.5e-17 Score=130.75 Aligned_cols=82 Identities=26% Similarity=0.455 Sum_probs=76.4
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEE
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVT 143 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v 143 (425)
......++|||+|||+++|+++|+++|++||+|++|+|+.++ +++++|||||+|.+.++|++||+.++ ..|.++.|.|
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 345678899999999999999999999999999999999998 99999999999999999999999877 8899999999
Q ss_pred Eecc
Q 014397 144 NLAV 147 (425)
Q Consensus 144 ~~~~ 147 (425)
.++.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9874
No 190
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.70 E-value=1.6e-17 Score=137.49 Aligned_cols=82 Identities=17% Similarity=0.218 Sum_probs=74.6
Q ss_pred CcccceEEEeecCCcccHHHHHHHHhhcCCce--eeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEE
Q 014397 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIE--EGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCR 237 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~--~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~ 237 (425)
....++|||+|||+++|+++|+++|++| .|+ +|+|++|+. ++++|||||+|+++++|++||+.++..|++|.|.|.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVF 116 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEE
Confidence 3456789999999999999999999999 677 899999976 999999999999999999999988899999999999
Q ss_pred EcccCC
Q 014397 238 LADNKK 243 (425)
Q Consensus 238 ~a~~~~ 243 (425)
++..++
T Consensus 117 ~a~~~e 122 (126)
T 2hgm_A 117 KSSQEE 122 (126)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 886543
No 191
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.70 E-value=4.3e-17 Score=124.19 Aligned_cols=72 Identities=14% Similarity=0.122 Sum_probs=67.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEec
Q 014397 69 TQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLA 146 (425)
Q Consensus 69 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~ 146 (425)
.+..|||+||++.+||++|+++|.+||+|.+|+++. +||||||+|.++++|++|++.++ ..+.+|.|.|+++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 466799999999999999999999999999999865 68999999999999999999998 8899999999877
No 192
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.70 E-value=2.3e-17 Score=123.99 Aligned_cols=75 Identities=29% Similarity=0.492 Sum_probs=71.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEEec
Q 014397 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLA 146 (425)
Q Consensus 72 ~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~~~ 146 (425)
+|||+|||+++|+++|+++|++||+|.+|+++.++.+++++|||||+|.+.++|++||+.....+.++.+.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 599999999999999999999999999999999998999999999999999999999998768999999988764
No 193
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.5e-17 Score=136.60 Aligned_cols=84 Identities=12% Similarity=0.167 Sum_probs=76.4
Q ss_pred CCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEEE
Q 014397 159 VDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRL 238 (425)
Q Consensus 159 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~~ 238 (425)
.....++|||+|||+++|+++|+++|++||.|.++.++.+..+++++|||||+|++.++|++||+.++..|+++.|.|.+
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEE
Confidence 34456899999999999999999999999999998788887899999999999999999999999546999999999999
Q ss_pred cccC
Q 014397 239 ADNK 242 (425)
Q Consensus 239 a~~~ 242 (425)
++.+
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 9765
No 194
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=9.4e-17 Score=125.41 Aligned_cols=81 Identities=20% Similarity=0.325 Sum_probs=75.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTN 144 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~ 144 (425)
.....++|||+|||+++|+++|+++|+.| .|.+|+|+++ .+++++|||||+|.+.++|++||+ ++ ..|.++.|.|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 45567899999999999999999999999 9999999999 689999999999999999999999 66 88999999999
Q ss_pred ecccC
Q 014397 145 LAVAG 149 (425)
Q Consensus 145 ~~~~~ 149 (425)
++...
T Consensus 83 ~a~~~ 87 (91)
T 2dgw_A 83 REKSG 87 (91)
T ss_dssp EESSC
T ss_pred ECCcC
Confidence 98764
No 195
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2.2e-17 Score=136.23 Aligned_cols=80 Identities=19% Similarity=0.182 Sum_probs=73.5
Q ss_pred ccceEEEeecCCcccHHHHHHHHhhcCCc----eeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEE
Q 014397 162 SLRKIFVGNVPNDMSADKLLAHFACYGEI----EEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCR 237 (425)
Q Consensus 162 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v----~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~ 237 (425)
...+|||+|||+++|+++|+++|++||.| .+|+|+.| .+++++|||||+|+++++|++||+.+...|++|.|.|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEE
Confidence 45789999999999999999999999875 68999998 58999999999999999999999987799999999999
Q ss_pred EcccC
Q 014397 238 LADNK 242 (425)
Q Consensus 238 ~a~~~ 242 (425)
.++.+
T Consensus 101 ~a~~~ 105 (123)
T 2dha_A 101 RSTAA 105 (123)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 88654
No 196
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.6e-17 Score=134.39 Aligned_cols=82 Identities=17% Similarity=0.270 Sum_probs=75.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCe-eEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGEL-EEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTN 144 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i-~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~ 144 (425)
.+...++|||+|||+++|+++|+++|+.||.| .+|+|+.++ +++++|||||+|.+.++|++||+.....|.++.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEE
Confidence 45567899999999999999999999999999 899999998 9999999999999999999999994488999999999
Q ss_pred eccc
Q 014397 145 LAVA 148 (425)
Q Consensus 145 ~~~~ 148 (425)
++..
T Consensus 90 ~a~~ 93 (114)
T 2cpy_A 90 VVTL 93 (114)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8864
No 197
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=7.2e-17 Score=132.09 Aligned_cols=83 Identities=40% Similarity=0.678 Sum_probs=77.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEEeccc
Q 014397 69 TQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLAVA 148 (425)
Q Consensus 69 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~~~~~ 148 (425)
..++|||+|||+++|+++|+++|+.||+|++|+|+.++.+++++|||||+|.+.++|++||+.....|.++.|.|.++..
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCC
Confidence 34789999999999999999999999999999999999899999999999999999999999944889999999999977
Q ss_pred CCC
Q 014397 149 GNS 151 (425)
Q Consensus 149 ~~~ 151 (425)
+..
T Consensus 106 ~~~ 108 (116)
T 1x4b_A 106 REE 108 (116)
T ss_dssp CCC
T ss_pred Ccc
Confidence 654
No 198
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.69 E-value=2.3e-17 Score=138.16 Aligned_cols=86 Identities=23% Similarity=0.378 Sum_probs=78.3
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE--EEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-C----CcC
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEE--AVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-K----KID 137 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~--v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~----~~~ 137 (425)
..+...++|||+|||+++|+++|+++|++||.|.+ |+|++|+.+++++|||||+|.+. +|++||+.++ . .|.
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 34456789999999999999999999999999977 99999999999999999999999 9999999988 6 899
Q ss_pred CceEEEEecccCCC
Q 014397 138 GRVTVTNLAVAGNS 151 (425)
Q Consensus 138 gr~~~v~~~~~~~~ 151 (425)
++.|.|.++.....
T Consensus 97 gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 97 GKTINVEFAKGSKR 110 (131)
T ss_dssp GCCCCCEECCCSCC
T ss_pred CEEEEEEECCCCCC
Confidence 99999999876543
No 199
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.69 E-value=1.5e-17 Score=130.93 Aligned_cols=81 Identities=15% Similarity=0.272 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEe
Q 014397 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNL 145 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~ 145 (425)
....++|||+|||+++|+++|+++|++||.|++++++.++.+++++|||||+|.++++|++||+.++ ..|.++.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 3346889999999999999999999999999999999999899999999999999999999999776 889999999998
Q ss_pred cc
Q 014397 146 AV 147 (425)
Q Consensus 146 ~~ 147 (425)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 200
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.69 E-value=5.2e-17 Score=128.13 Aligned_cols=79 Identities=14% Similarity=0.134 Sum_probs=70.3
Q ss_pred CCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCC-C--ccCCeEEE
Q 014397 159 VDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPI-K--TVDGKQLN 235 (425)
Q Consensus 159 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~-~--~~~gr~i~ 235 (425)
...++++|||+|||+++|+++|+++|++||.|++|.|+++ ||||||+|++.++|++|++.++ . .|+|++|.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 3446689999999999999999999999999999999854 7999999999999999999863 3 58999999
Q ss_pred EEEcccCC
Q 014397 236 CRLADNKK 243 (425)
Q Consensus 236 v~~a~~~~ 243 (425)
|.+++.++
T Consensus 91 V~~S~~k~ 98 (100)
T 3r27_A 91 VNYSTSQK 98 (100)
T ss_dssp EEECSCSC
T ss_pred EEeccccc
Confidence 99998754
No 201
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.6e-16 Score=127.16 Aligned_cols=82 Identities=13% Similarity=0.079 Sum_probs=72.3
Q ss_pred CCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC---CCccCCeEEE
Q 014397 159 VDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP---IKTVDGKQLN 235 (425)
Q Consensus 159 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~---~~~~~gr~i~ 235 (425)
.....++|||+|||+++|+++|+++|++||.|++|.|+.+ ||||||+|++.++|++|++.+ ...|+|++|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3445689999999999999999999999999999999864 799999999999999999975 2569999999
Q ss_pred EEEcccCCCCC
Q 014397 236 CRLADNKKAKP 246 (425)
Q Consensus 236 v~~a~~~~~~~ 246 (425)
|.+++.+..+.
T Consensus 85 V~~a~~~~~~~ 95 (104)
T 1wex_A 85 FNYSTSKRITR 95 (104)
T ss_dssp EEECSSSSCCC
T ss_pred EEEccCccccC
Confidence 99998766543
No 202
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.69 E-value=1.3e-16 Score=132.26 Aligned_cols=86 Identities=19% Similarity=0.302 Sum_probs=78.7
Q ss_pred CCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEE
Q 014397 159 VDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCR 237 (425)
Q Consensus 159 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~ 237 (425)
.....++|||+|||+++++++|+++|++||.|++|.|+.++ +++++|||||+|.+.++|++||+.+ +..|+|+.|.|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44566899999999999999999999999999999999998 9999999999999999999999975 689999999999
Q ss_pred EcccCCCC
Q 014397 238 LADNKKAK 245 (425)
Q Consensus 238 ~a~~~~~~ 245 (425)
++......
T Consensus 110 ~a~~~~~~ 117 (124)
T 2kt5_A 110 LVASQIDL 117 (124)
T ss_dssp EECCTTCC
T ss_pred EeCCCCCC
Confidence 99776543
No 203
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.69 E-value=5.8e-17 Score=125.63 Aligned_cols=81 Identities=28% Similarity=0.454 Sum_probs=74.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCC-cccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEec
Q 014397 69 TQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGK-SKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLA 146 (425)
Q Consensus 69 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~-skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~ 146 (425)
..++|||+|||+++|+++|+++|++||.|.+|+++.++.++. ++|||||+|.+.++|++|++.++ ..+.++.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 467899999999999999999999999999999999987766 99999999999999999999876 8899999999998
Q ss_pred ccC
Q 014397 147 VAG 149 (425)
Q Consensus 147 ~~~ 149 (425)
...
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 204
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.4e-17 Score=128.37 Aligned_cols=79 Identities=30% Similarity=0.483 Sum_probs=72.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEec
Q 014397 68 PTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLA 146 (425)
Q Consensus 68 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~ 146 (425)
...++|||+|||+++|+++|+++|++||+|.+|+|+.++.+++++|||||+|.+.++|++||+.++ ..+.++.+.+.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 467899999999999999999999999999999999999899999999999999999999999887 7788887766554
No 205
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.69 E-value=1.1e-16 Score=125.16 Aligned_cols=82 Identities=26% Similarity=0.374 Sum_probs=75.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEe
Q 014397 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNL 145 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~ 145 (425)
....++|||+|||+++|+++|+++|++||+|++|+|+++ +++++|||||+|.+.++|++||+.++ ..+.++.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456789999999999999999999999999999999984 78999999999999999999999877 889999999999
Q ss_pred cccCC
Q 014397 146 AVAGN 150 (425)
Q Consensus 146 ~~~~~ 150 (425)
+....
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 87654
No 206
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.69 E-value=2.2e-16 Score=126.38 Aligned_cols=80 Identities=21% Similarity=0.366 Sum_probs=71.5
Q ss_pred CcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEE
Q 014397 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRL 238 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~ 238 (425)
....++|||+|||+++|+++|+++|++||.|++|.|+ ++||||+|.+.++|++||+.+ +..|+++.|.|++
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3456899999999999999999999999999999987 459999999999999999985 6899999999999
Q ss_pred cccCCCCCC
Q 014397 239 ADNKKAKPM 247 (425)
Q Consensus 239 a~~~~~~~~ 247 (425)
++.+..+..
T Consensus 80 a~~~~~~~~ 88 (103)
T 2dgu_A 80 AKPPDQKRK 88 (103)
T ss_dssp CCCCCCCCC
T ss_pred cCCCcccch
Confidence 987765543
No 207
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=2.2e-17 Score=131.64 Aligned_cols=85 Identities=18% Similarity=0.218 Sum_probs=75.9
Q ss_pred CcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEEEc
Q 014397 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLA 239 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~~a 239 (425)
....++|||+|||+++|+++|+++|++||.|.. .++.++.+++++|||||+|++.++|++||+.++..|+++.|.|.++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEc
Confidence 345689999999999999999999999999998 7777878899999999999999999999993358999999999999
Q ss_pred ccCCCC
Q 014397 240 DNKKAK 245 (425)
Q Consensus 240 ~~~~~~ 245 (425)
+.+..+
T Consensus 93 ~~~~~~ 98 (101)
T 1fj7_A 93 KGRDGT 98 (101)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 876543
No 208
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.68 E-value=2.3e-17 Score=128.64 Aligned_cols=81 Identities=25% Similarity=0.444 Sum_probs=72.3
Q ss_pred ceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEcccC
Q 014397 164 RKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLADNK 242 (425)
Q Consensus 164 ~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a~~~ 242 (425)
++|||+|||+++++++|+++|++||.|++|.|+.++.+++++|||||+|.+.+ |++|++.+ +..|+|++|.|+++..+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999999999999999999999 99999986 58899999999999776
Q ss_pred CCC
Q 014397 243 KAK 245 (425)
Q Consensus 243 ~~~ 245 (425)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 443
No 209
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.68 E-value=2.8e-17 Score=130.89 Aligned_cols=85 Identities=18% Similarity=0.300 Sum_probs=73.5
Q ss_pred CCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccC-CCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEE
Q 014397 158 PVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDK-QTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNC 236 (425)
Q Consensus 158 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~-~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v 236 (425)
......++|||+|||+++|+++|+++|++|| |++|+|+.++ .+++++|||||+|.+.++|++||+.++..|+|+.|.|
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V 92 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRV 92 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEE
Confidence 3445668999999999999999999999999 9999999998 6899999999999999999999943469999999999
Q ss_pred EEcccCC
Q 014397 237 RLADNKK 243 (425)
Q Consensus 237 ~~a~~~~ 243 (425)
++++.+.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9997653
No 210
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=2.3e-18 Score=141.05 Aligned_cols=87 Identities=23% Similarity=0.259 Sum_probs=79.5
Q ss_pred CcccceEEEeecCCcccHHHHHHHHhhcCCcee--------eeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccC
Q 014397 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEE--------GPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVD 230 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~--------v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~ 230 (425)
..+.++|||+|||+++|+++|+++|++||.|.. |.|+.|+.+++++|||||+|.+.++|++||+.+ +..|+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 345689999999999999999999999999998 999999999999999999999999999999986 58999
Q ss_pred CeEEEEEEcccCCCCC
Q 014397 231 GKQLNCRLADNKKAKP 246 (425)
Q Consensus 231 gr~i~v~~a~~~~~~~ 246 (425)
+++|.|++++++..+.
T Consensus 84 g~~l~V~~a~~~~~~~ 99 (116)
T 2lcw_A 84 GNPIKVSFATRRADFN 99 (116)
Confidence 9999999998776543
No 211
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.68 E-value=6.6e-17 Score=136.03 Aligned_cols=86 Identities=24% Similarity=0.411 Sum_probs=79.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTN 144 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~ 144 (425)
.....++|||+|||+++|+++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+.++ ..|.++.|.|.
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34457889999999999999999999999999999999998899999999999999999999999887 88999999999
Q ss_pred ecccCCC
Q 014397 145 LAVAGNS 151 (425)
Q Consensus 145 ~~~~~~~ 151 (425)
++.....
T Consensus 123 ~a~~~~~ 129 (135)
T 2lea_A 123 MARYGRP 129 (135)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 9976543
No 212
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.68 E-value=3.9e-17 Score=131.76 Aligned_cols=84 Identities=15% Similarity=0.133 Sum_probs=76.1
Q ss_pred CCcccceEEEeecCCcccHHHHHHHHhhcCC---ceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEE
Q 014397 159 VDVSLRKIFVGNVPNDMSADKLLAHFACYGE---IEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLN 235 (425)
Q Consensus 159 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~---v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~ 235 (425)
......+|||+|||+++|+++|+++|++||. |.+|+|+.|+. ++++|||||+|.+.++|++||+.+...|+++.|.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEE
Confidence 3445688999999999999999999999998 89999999977 9999999999999999999999556899999999
Q ss_pred EEEcccCC
Q 014397 236 CRLADNKK 243 (425)
Q Consensus 236 v~~a~~~~ 243 (425)
|.++..+.
T Consensus 86 V~~a~~~~ 93 (107)
T 2lmi_A 86 VYEINNED 93 (107)
T ss_dssp CEECCHHH
T ss_pred EEECCHHH
Confidence 99987643
No 213
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2e-17 Score=134.93 Aligned_cols=81 Identities=23% Similarity=0.395 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEec
Q 014397 68 PTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLA 146 (425)
Q Consensus 68 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~ 146 (425)
...++|||+|||+++|+++|+++|+.||.|++|+|+.++.+++++|||||+|.+.++|++|| .++ ..|.++.|.|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 34678999999999999999999999999999999999989999999999999999999999 555 8899999999998
Q ss_pred ccC
Q 014397 147 VAG 149 (425)
Q Consensus 147 ~~~ 149 (425)
...
T Consensus 102 ~~~ 104 (114)
T 2cq4_A 102 QAE 104 (114)
T ss_dssp HHH
T ss_pred CCC
Confidence 653
No 214
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=124.23 Aligned_cols=79 Identities=20% Similarity=0.408 Sum_probs=71.3
Q ss_pred CcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEE
Q 014397 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRL 238 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~ 238 (425)
....++|||+|||+++|+++|+++|++||.|++|.|+ ++||||+|.+.++|++|++.+ +..|++++|.|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3456899999999999999999999999999999997 679999999999999999875 5899999999999
Q ss_pred cccCCCCC
Q 014397 239 ADNKKAKP 246 (425)
Q Consensus 239 a~~~~~~~ 246 (425)
++.+....
T Consensus 77 a~~~~~~~ 84 (90)
T 2dnq_A 77 SKNKSKAS 84 (90)
T ss_dssp SSCCCCCC
T ss_pred CCCCCCCC
Confidence 98766543
No 215
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.68 E-value=7.8e-17 Score=135.33 Aligned_cols=82 Identities=18% Similarity=0.280 Sum_probs=74.8
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCce
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGE---LEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRV 140 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~---i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~ 140 (425)
......++|||+|||+++|+++|+++|++||. |++|+|++|+. ++++|||||+|.+.++|++||+ ++ ..|.+|.
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 34556789999999999999999999999999 89999999986 9999999999999999999999 66 8899999
Q ss_pred EEEEeccc
Q 014397 141 TVTNLAVA 148 (425)
Q Consensus 141 ~~v~~~~~ 148 (425)
|.|.++..
T Consensus 117 i~V~~a~~ 124 (136)
T 2hgl_A 117 IEVFKSHR 124 (136)
T ss_dssp EEEEECCH
T ss_pred EEEEECCh
Confidence 99988743
No 216
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.68 E-value=7.2e-17 Score=133.46 Aligned_cols=81 Identities=23% Similarity=0.300 Sum_probs=73.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCee--EEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELE--EAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVT 143 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~--~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v 143 (425)
.....++|||+|||+++|+++|+++|++| .|+ +|+|+.|+. ++++|||||+|.++++|++||+.++..|.+|.|.|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEE
Confidence 34567889999999999999999999999 677 899999976 99999999999999999999998779999999998
Q ss_pred Eeccc
Q 014397 144 NLAVA 148 (425)
Q Consensus 144 ~~~~~ 148 (425)
..+..
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 87754
No 217
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.5e-17 Score=128.19 Aligned_cols=78 Identities=18% Similarity=0.251 Sum_probs=71.8
Q ss_pred ccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEc
Q 014397 162 SLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLA 239 (425)
Q Consensus 162 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a 239 (425)
..++|||+|||+++|+++|+++|++||.|++|.|+.++.+++++|||||+|.+.++|++|++.+ +..|+++.|+|+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 4589999999999999999999999999999999999999999999999999999999999986 47888888877654
No 218
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=9.9e-17 Score=129.56 Aligned_cols=82 Identities=23% Similarity=0.181 Sum_probs=72.2
Q ss_pred CcccceEEEeecCCc-ccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC---CCccCCeEEE
Q 014397 160 DVSLRKIFVGNVPND-MSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP---IKTVDGKQLN 235 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~-~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~---~~~~~gr~i~ 235 (425)
....++|||+|||++ +|+++|+++|++||+|++|.|++. ||||||+|++.++|++||+.+ ...|+|++|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 445789999999998 999999999999999999999753 799999999999999999975 3569999999
Q ss_pred EEEcccCCCCCC
Q 014397 236 CRLADNKKAKPM 247 (425)
Q Consensus 236 v~~a~~~~~~~~ 247 (425)
|.+++.+.....
T Consensus 96 V~~a~~~~~~~~ 107 (112)
T 1x4f_A 96 VDLSEKYKKLVS 107 (112)
T ss_dssp EEEECSCSSSSC
T ss_pred EEECcccccccc
Confidence 999987665443
No 219
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.67 E-value=6.3e-17 Score=140.21 Aligned_cols=122 Identities=24% Similarity=0.351 Sum_probs=100.1
Q ss_pred CCCCCCCChHHHHHHHHhhchhhHHHHHHHhhhccchhhhhhhhcccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCee
Q 014397 19 LESPNRLTPQDARKIVERLTSDQLLDVLSSAVARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELE 98 (425)
Q Consensus 19 ~~~~~~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~ 98 (425)
...+.|.+.++|+++++.++...+.... -.+..............++|||+|||.++|+++|+++|++||.|.
T Consensus 43 ~afV~f~~~~~a~~A~~~l~~~~~~g~~-------i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~ 115 (166)
T 3md3_A 43 YAFVEYHQSHDANIALQTLNGKQIENNI-------VKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYL 115 (166)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCEETTEE-------CEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEE
T ss_pred EEEEEeCCHHHHHHHHHHcCCCccCCCe-------eEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCee
Confidence 4667888999999999888877664210 001111112223455678999999999999999999999999999
Q ss_pred EEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecc
Q 014397 99 EAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAV 147 (425)
Q Consensus 99 ~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~ 147 (425)
+|+++.++.+++++|||||+|.+.++|++|++.++ ..+.++.|.|.++.
T Consensus 116 ~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 116 SGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp EEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 99999998899999999999999999999999877 88999999999975
No 220
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.67 E-value=1.9e-16 Score=124.87 Aligned_cols=78 Identities=22% Similarity=0.338 Sum_probs=69.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CC--cCCceEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KK--IDGRVTV 142 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~--~~gr~~~ 142 (425)
...++++|||+|||+++|+++|+++|++||.|++|++++ +||||||+|++.++|++||+.++ .. +.|+.|.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 345678999999999999999999999999999999985 36899999999999999999887 43 7899999
Q ss_pred EEecccC
Q 014397 143 TNLAVAG 149 (425)
Q Consensus 143 v~~~~~~ 149 (425)
|+++..+
T Consensus 91 V~~S~~k 97 (100)
T 3r27_A 91 VNYSTSQ 97 (100)
T ss_dssp EEECSCS
T ss_pred EEecccc
Confidence 9998764
No 221
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.6e-16 Score=129.76 Aligned_cols=81 Identities=17% Similarity=0.209 Sum_probs=72.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC---CCcCCceEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS---KKIDGRVTV 142 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~---~~~~gr~~~ 142 (425)
...+.++|||+|||+++|+++|+++|++||.|++|+|+++ ||||||+|++.++|++||+.++ ..|.++.|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3456789999999999999999999999999999999875 6899999999999999999775 579999999
Q ss_pred EEecccCCCC
Q 014397 143 TNLAVAGNSG 152 (425)
Q Consensus 143 v~~~~~~~~~ 152 (425)
|.++..+...
T Consensus 101 V~~a~~k~~~ 110 (119)
T 2ad9_A 101 IQFSNHKELK 110 (119)
T ss_dssp EEECSSSSCC
T ss_pred EEEccCCCCC
Confidence 9999765543
No 222
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.67 E-value=6.5e-17 Score=129.15 Aligned_cols=84 Identities=24% Similarity=0.372 Sum_probs=76.8
Q ss_pred CCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEEE
Q 014397 159 VDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRL 238 (425)
Q Consensus 159 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~~ 238 (425)
.....++|||+|||+++|+++|+++|++||.|++|.|+.++ +++++|||||+|++.++|++||+ +...|+|+.|.|.+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGP 82 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEE
Confidence 34566899999999999999999999999999999999998 99999999999999999999999 77899999999999
Q ss_pred cccCCC
Q 014397 239 ADNKKA 244 (425)
Q Consensus 239 a~~~~~ 244 (425)
+..+..
T Consensus 83 a~~~~~ 88 (102)
T 2xs2_A 83 AIRKQN 88 (102)
T ss_dssp EEECC-
T ss_pred CCcCcc
Confidence 876543
No 223
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.6e-17 Score=134.94 Aligned_cols=82 Identities=17% Similarity=0.319 Sum_probs=74.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTN 144 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~ 144 (425)
.....++|||+|||+++|+++|+++|+.||.|.+|.++.+..+++++|||||+|.+.++|++||+ ++ ..|.++.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 44567899999999999999999999999999997778877899999999999999999999999 55 89999999999
Q ss_pred eccc
Q 014397 145 LAVA 148 (425)
Q Consensus 145 ~~~~ 148 (425)
++..
T Consensus 100 ~a~~ 103 (124)
T 1wel_A 100 PITK 103 (124)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8754
No 224
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.1e-16 Score=127.74 Aligned_cols=84 Identities=17% Similarity=0.276 Sum_probs=74.6
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEE
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVT 143 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v 143 (425)
..+...++|||+|||+++|+++|+++|++||+|++|+|+.+ +++++||||+|.+.++|++||+.++ ..|.++.|.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34557789999999999999999999999999999999654 5689999999999999999998877 8899999999
Q ss_pred EecccCCC
Q 014397 144 NLAVAGNS 151 (425)
Q Consensus 144 ~~~~~~~~ 151 (425)
.++.....
T Consensus 94 ~~a~~~~~ 101 (109)
T 1x4a_A 94 EFPRSGRG 101 (109)
T ss_dssp ECCCCCCC
T ss_pred EEcccCCC
Confidence 99876543
No 225
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.6e-16 Score=125.55 Aligned_cols=81 Identities=11% Similarity=0.208 Sum_probs=73.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceE
Q 014397 67 DPTQRKLFIRGLGWDTTTEGLR----SIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVT 141 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~l~----~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~ 141 (425)
....++|||+|||+++|+++|+ ++|++||+|++|+|+.++.+ ++||||+|.+.++|++||+.++ ..|.++.|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3456789999999999999999 99999999999999998765 8899999999999999999887 88999999
Q ss_pred EEEecccCC
Q 014397 142 VTNLAVAGN 150 (425)
Q Consensus 142 ~v~~~~~~~ 150 (425)
.|.++....
T Consensus 83 ~V~~a~~~~ 91 (96)
T 2dgx_A 83 LVSLATGAS 91 (96)
T ss_dssp EEEECCCSS
T ss_pred EEEEcCCCC
Confidence 999996543
No 226
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.67 E-value=2.3e-16 Score=130.61 Aligned_cols=80 Identities=21% Similarity=0.427 Sum_probs=74.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEeccc
Q 014397 70 QRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAVA 148 (425)
Q Consensus 70 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~~ 148 (425)
.++|||+|||+++|+++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++|| .++ ..|.++.|.|.++..
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 468999999999999999999999999999999999889999999999999999999999 565 889999999999875
Q ss_pred CC
Q 014397 149 GN 150 (425)
Q Consensus 149 ~~ 150 (425)
..
T Consensus 115 ~~ 116 (124)
T 2jwn_A 115 NM 116 (124)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 227
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.67 E-value=2.6e-16 Score=130.30 Aligned_cols=85 Identities=25% Similarity=0.420 Sum_probs=78.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTN 144 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~ 144 (425)
.....++|||+|||+++|+++|+++|++||+|++|+|+.++ +++++|||||+|.+.++|++||+.++ ..|.++.|.|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44567899999999999999999999999999999999998 99999999999999999999999777 88999999999
Q ss_pred ecccCCC
Q 014397 145 LAVAGNS 151 (425)
Q Consensus 145 ~~~~~~~ 151 (425)
++.....
T Consensus 110 ~a~~~~~ 116 (124)
T 2kt5_A 110 LVASQID 116 (124)
T ss_dssp EECCTTC
T ss_pred EeCCCCC
Confidence 9876443
No 228
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.67 E-value=4.3e-17 Score=127.04 Aligned_cols=79 Identities=24% Similarity=0.471 Sum_probs=72.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecccC
Q 014397 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAVAG 149 (425)
Q Consensus 71 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~~~ 149 (425)
++|||+|||+++|+++|+++|++||+|++|+++.++.+++++|||||+|.+.+ |++|++.++ ..+.++.|.|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999989999999999999999 999999988 8899999999998764
Q ss_pred C
Q 014397 150 N 150 (425)
Q Consensus 150 ~ 150 (425)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 229
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.67 E-value=6e-17 Score=146.91 Aligned_cols=134 Identities=19% Similarity=0.316 Sum_probs=102.3
Q ss_pred CCCCCCCCChHHHHHHHHhhchhhHHHHHHHhh-h-ccchhhhhhhhcccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcC
Q 014397 18 DLESPNRLTPQDARKIVERLTSDQLLDVLSSAV-A-RHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYG 95 (425)
Q Consensus 18 ~~~~~~~~~~e~~~~~~e~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G 95 (425)
....+.|.+.++|+++++.++...+........ . ...................++|||+|||+++|+++|+++|++||
T Consensus 71 g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G 150 (216)
T 2qfj_A 71 GFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFG 150 (216)
T ss_dssp SEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSS
T ss_pred ceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccC
Confidence 346688899999999999887655543211000 0 00000011111122334668999999999999999999999999
Q ss_pred CeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecccCCC
Q 014397 96 ELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAVAGNS 151 (425)
Q Consensus 96 ~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~~~~~ 151 (425)
.|++|+|+.++.+++++|||||+|.+.++|++||+.++ ..|.++.|.|.++.....
T Consensus 151 ~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 151 KIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSS
T ss_pred CeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCC
Confidence 99999999999899999999999999999999999877 889999999999877543
No 230
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.67 E-value=5.3e-17 Score=129.28 Aligned_cols=83 Identities=18% Similarity=0.365 Sum_probs=72.2
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecC-CCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEE
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDK-ATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTV 142 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~ 142 (425)
......++|||+|||+++|+++|+++|+.|| |.+|+|+.++ .+++++|||||+|.+.++|++|| .++ ..|.++.|.
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 3455678999999999999999999999999 9999999998 68999999999999999999999 555 899999999
Q ss_pred EEecccC
Q 014397 143 TNLAVAG 149 (425)
Q Consensus 143 v~~~~~~ 149 (425)
|.++...
T Consensus 92 V~~a~~~ 98 (100)
T 2j76_E 92 VDVADQA 98 (100)
T ss_dssp CEECCCS
T ss_pred EEeccCC
Confidence 9998654
No 231
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.67 E-value=2.3e-16 Score=133.32 Aligned_cols=82 Identities=27% Similarity=0.444 Sum_probs=75.6
Q ss_pred CCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEE
Q 014397 158 PVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNC 236 (425)
Q Consensus 158 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v 236 (425)
......++|||+|||+++|+++|+++|++||.|++|+|+.++.+++++|||||+|.++++|++||+.+ +..|+|+.|.|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999886 48999999999
Q ss_pred EEc
Q 014397 237 RLA 239 (425)
Q Consensus 237 ~~a 239 (425)
++|
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 875
No 232
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.66 E-value=2.3e-17 Score=141.41 Aligned_cols=130 Identities=18% Similarity=0.247 Sum_probs=95.7
Q ss_pred cccCCCCCCCCChHHHHHHHHhh-chhhHHHHHHHhhhccch------hhhhhhhcccCCCCCCeEEEcCCCCCCCHHHH
Q 014397 15 VLSDLESPNRLTPQDARKIVERL-TSDQLLDVLSSAVARHDD------VLESVRSIADADPTQRKLFIRGLGWDTTTEGL 87 (425)
Q Consensus 15 ~~~~~~~~~~~~~e~~~~~~e~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~l 87 (425)
.+.....+++.+.++|+++++.+ +...+...+......... ...............++|||+|||+++|+++|
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l 90 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTEL 90 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCCEEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHHH
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCCceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHH
Confidence 33344456788999999999888 655443311100000000 00001122344557789999999999999999
Q ss_pred HHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecccC
Q 014397 88 RSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAVAG 149 (425)
Q Consensus 88 ~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~~~ 149 (425)
+++|++||.|++|+|+++ ++|||||+|.+.++|++||+.++ ..|.++.|.|.++...
T Consensus 91 ~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 91 ERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 999999999999999876 58999999999999999999776 8899999999998654
No 233
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.66 E-value=1.7e-16 Score=128.46 Aligned_cols=78 Identities=17% Similarity=0.090 Sum_probs=69.2
Q ss_pred ccceEEEeecCCcccHHHHHHHHhhcC-CceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEc
Q 014397 162 SLRKIFVGNVPNDMSADKLLAHFACYG-EIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLA 239 (425)
Q Consensus 162 ~~~~l~V~nL~~~~te~~L~~~F~~~G-~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a 239 (425)
...+|||+|||+++|+++|+++|++|| +|..|.|..+ +++|||||+|++.++|++||+.+ +..|+|++|.|+++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 347999999999999999999999999 8999988643 47999999999999999999986 58999999999998
Q ss_pred ccCC
Q 014397 240 DNKK 243 (425)
Q Consensus 240 ~~~~ 243 (425)
+...
T Consensus 103 ~~~p 106 (111)
T 2jvr_A 103 DNPP 106 (111)
T ss_dssp CC--
T ss_pred CCCC
Confidence 7543
No 234
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=3.7e-16 Score=125.07 Aligned_cols=79 Identities=16% Similarity=0.218 Sum_probs=70.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC---CCcCCceEEE
Q 014397 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS---KKIDGRVTVT 143 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~---~~~~gr~~~v 143 (425)
..+.++|||+|||+++|+++|+++|++||.|++|+|+++ ||||||+|++.++|++||+.++ ..+.++.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456789999999999999999999999999999998753 6899999999999999999764 4589999999
Q ss_pred EecccCCC
Q 014397 144 NLAVAGNS 151 (425)
Q Consensus 144 ~~~~~~~~ 151 (425)
.++..+..
T Consensus 86 ~~a~~~~~ 93 (104)
T 1wex_A 86 NYSTSKRI 93 (104)
T ss_dssp EECSSSSC
T ss_pred EEccCccc
Confidence 99976554
No 235
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3.8e-16 Score=122.20 Aligned_cols=79 Identities=23% Similarity=0.333 Sum_probs=70.8
Q ss_pred CCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEE
Q 014397 159 VDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCR 237 (425)
Q Consensus 159 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~ 237 (425)
.....++|||+|||+++|+++|+++|++||.|++|.|++ +||||+|++.++|++|++.+ +..|+++.|.|+
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 345668999999999999999999999999999999973 39999999999999999885 689999999999
Q ss_pred EcccCCCC
Q 014397 238 LADNKKAK 245 (425)
Q Consensus 238 ~a~~~~~~ 245 (425)
+++.+...
T Consensus 78 ~a~~~~~~ 85 (92)
T 2dgt_A 78 LSTSRLRT 85 (92)
T ss_dssp ESSCCCSC
T ss_pred EccCCCCC
Confidence 99876543
No 236
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.66 E-value=2.2e-16 Score=126.86 Aligned_cols=82 Identities=23% Similarity=0.319 Sum_probs=74.0
Q ss_pred CCCCCCeEEEcCCCCCC------CHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCC
Q 014397 66 ADPTQRKLFIRGLGWDT------TTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDG 138 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~------te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~g 138 (425)
.....++|||+|||+++ |+++|+++|++||+|.+|+|+ +.+++++|||||+|.+.++|++||+.++ ..|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 34457899999999999 789999999999999999988 3589999999999999999999999888 88999
Q ss_pred c-eEEEEecccC
Q 014397 139 R-VTVTNLAVAG 149 (425)
Q Consensus 139 r-~~~v~~~~~~ 149 (425)
+ .|.|.++...
T Consensus 89 ~~~l~V~~a~~~ 100 (105)
T 2nlw_A 89 QHTFRVNLFTDF 100 (105)
T ss_dssp TCEEEEECSCCC
T ss_pred CceEEEEEcchH
Confidence 8 9999998654
No 237
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.66 E-value=1.1e-16 Score=131.51 Aligned_cols=82 Identities=20% Similarity=0.314 Sum_probs=74.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGE---LEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTV 142 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~---i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~ 142 (425)
.....++|||+|||+++|+++|+++|+.||. |++|+|+.++. ++++|||||+|.+.++|++||+.....|.+|.|.
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~ 91 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIE 91 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEE
Confidence 3456788999999999999999999999999 89999999975 9999999999999999999999544889999999
Q ss_pred EEeccc
Q 014397 143 TNLAVA 148 (425)
Q Consensus 143 v~~~~~ 148 (425)
|.++..
T Consensus 92 V~~a~~ 97 (118)
T 2db1_A 92 VFKSHR 97 (118)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 988743
No 238
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.66 E-value=1.3e-16 Score=121.61 Aligned_cols=72 Identities=15% Similarity=0.108 Sum_probs=67.5
Q ss_pred cceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEcc
Q 014397 163 LRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLAD 240 (425)
Q Consensus 163 ~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a~ 240 (425)
+..|||+||++.+||++|+++|.+||+|++++|.. +||||||+|.++++|++|++.+ +..|.+++|.|++|+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 46799999999999999999999999999999975 4899999999999999999996 599999999999985
No 239
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.66 E-value=2.3e-16 Score=133.32 Aligned_cols=82 Identities=27% Similarity=0.503 Sum_probs=75.9
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEE
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVT 143 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v 143 (425)
......++|||+|||+++|+++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+.++ ..|.++.|.|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345578899999999999999999999999999999999998899999999999999999999999888 8899999999
Q ss_pred Eec
Q 014397 144 NLA 146 (425)
Q Consensus 144 ~~~ 146 (425)
.++
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 874
No 240
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.7e-16 Score=128.43 Aligned_cols=84 Identities=19% Similarity=0.356 Sum_probs=75.8
Q ss_pred CCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEE
Q 014397 157 NPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLN 235 (425)
Q Consensus 157 ~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~ 235 (425)
.......++|||+|||+++|+++|+++|++||.|++|+|+.++ ++++|||||+|.+.++|++|++.+ +..|+|+.|.
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3445567899999999999999999999999999999999885 458999999999999999999985 6899999999
Q ss_pred EEEcccC
Q 014397 236 CRLADNK 242 (425)
Q Consensus 236 v~~a~~~ 242 (425)
|++++.+
T Consensus 101 V~~a~~~ 107 (109)
T 2err_A 101 VNNATAR 107 (109)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9999765
No 241
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.66 E-value=2.4e-16 Score=126.66 Aligned_cols=81 Identities=22% Similarity=0.291 Sum_probs=73.5
Q ss_pred CcccceEEEeecCCcc------cHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCe
Q 014397 160 DVSLRKIFVGNVPNDM------SADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGK 232 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~~------te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr 232 (425)
....++|||+|||+.+ |+++|+++|++||.|.+|.|+ +.+++++|||||+|.+.++|++||+.+ +..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3446899999999999 889999999999999999998 468999999999999999999999986 5899998
Q ss_pred -EEEEEEcccC
Q 014397 233 -QLNCRLADNK 242 (425)
Q Consensus 233 -~i~v~~a~~~ 242 (425)
+|.|.+++..
T Consensus 90 ~~l~V~~a~~~ 100 (105)
T 2nlw_A 90 HTFRVNLFTDF 100 (105)
T ss_dssp CEEEEECSCCC
T ss_pred ceEEEEEcchH
Confidence 9999998754
No 242
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.66 E-value=1.5e-16 Score=142.10 Aligned_cols=130 Identities=19% Similarity=0.307 Sum_probs=91.3
Q ss_pred CCCCCCCChHHHHHHHHhhchhhHHHHHHHhhhccchhhhhhhhcccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCee
Q 014397 19 LESPNRLTPQDARKIVERLTSDQLLDVLSSAVARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELE 98 (425)
Q Consensus 19 ~~~~~~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~ 98 (425)
...+.|.+.++|+++++. +...+..... ....... .............++|||+|||+++|+++|+++|+.||.|+
T Consensus 57 ~afV~f~~~~~A~~A~~~-~~~~~~g~~l-~v~~~~~--~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~ 132 (196)
T 1l3k_A 57 FGFVTYATVEEVDAAMNA-RPHKVDGRVV-EPKRAVS--REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE 132 (196)
T ss_dssp EEEEEESSHHHHHHHHHT-CSCEETTEEC-EEEECCC-------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEE
T ss_pred eEEEEeCCHHHHHHHHhc-CCCEECCEEe-eeecccC--cccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeE
Confidence 355677788888888876 2222211000 0000000 00111122334568999999999999999999999999999
Q ss_pred EEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEEecccCCCC
Q 014397 99 EAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLAVAGNSG 152 (425)
Q Consensus 99 ~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~~~~~~~~~ 152 (425)
+|+|+.++.+++++|||||+|.+.++|++||+.+...|.|+.|.|.++..+...
T Consensus 133 ~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 133 VIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC-----
T ss_pred EEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecCChhHh
Confidence 999999988999999999999999999999998779999999999999876543
No 243
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.7e-16 Score=128.19 Aligned_cols=83 Identities=16% Similarity=0.309 Sum_probs=74.9
Q ss_pred CCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCcc--------
Q 014397 159 VDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTV-------- 229 (425)
Q Consensus 159 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~-------- 229 (425)
.....++|||+|||+++|+++|+++|++||.|++|+|+.++ +++++|||||+|.+.++|++||+.+ +..|
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34566899999999999999999999999999999999997 9999999999999999999999985 5777
Q ss_pred CCeEEEEEEcccC
Q 014397 230 DGKQLNCRLADNK 242 (425)
Q Consensus 230 ~gr~i~v~~a~~~ 242 (425)
.+++|.|+++.++
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 5788999998753
No 244
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.9e-16 Score=127.82 Aligned_cols=77 Identities=17% Similarity=0.324 Sum_probs=70.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEEeccc
Q 014397 70 QRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLAVA 148 (425)
Q Consensus 70 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~~~~~ 148 (425)
.++|||+|||+++|+++|+++|+.| .|++|+|+.++ +++++|||||+|.++++|++||+.....|.+|.|.|..+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCc
Confidence 4689999999999999999999999 89999999997 49999999999999999999996555889999999977744
No 245
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.3e-16 Score=127.04 Aligned_cols=78 Identities=14% Similarity=0.172 Sum_probs=69.9
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC---CCcCCceEE
Q 014397 67 DPTQRKLFIRGLGW-DTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS---KKIDGRVTV 142 (425)
Q Consensus 67 ~~~~~~lfV~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~---~~~~gr~~~ 142 (425)
..+.++|||+|||+ ++|+++|+++|++||.|.+|+|+++ ++||||+|++.++|++||+.++ ..|.++.|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 34678999999999 9999999999999999999999865 4799999999999999999876 358999999
Q ss_pred EEecccCC
Q 014397 143 TNLAVAGN 150 (425)
Q Consensus 143 v~~~~~~~ 150 (425)
|.++....
T Consensus 86 V~~a~~~~ 93 (102)
T 1x4d_A 86 VHLSQKYK 93 (102)
T ss_dssp EEEECCCT
T ss_pred EEECCCCC
Confidence 99997644
No 246
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.1e-16 Score=130.07 Aligned_cols=85 Identities=15% Similarity=0.281 Sum_probs=76.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH---HHHhhcCCeeEEEEeecCCCC---CcccEEEEEecchHHHHHHHhcCC-CCcCC
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLR---SIFSAYGELEEAVVILDKATG---KSKGYGFITFKHIDGAMLALKEPS-KKIDG 138 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~---~~F~~~G~i~~v~i~~~~~~g---~skG~aFV~F~~~e~A~~Al~~~~-~~~~g 138 (425)
.....++|||+|||+++|+++|+ ++|++||+|++|+|++++.++ +++|||||+|.+.++|++||+.++ ..|.+
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 44567899999999999999999 999999999999999987644 566999999999999999999877 88999
Q ss_pred ceEEEEecccCC
Q 014397 139 RVTVTNLAVAGN 150 (425)
Q Consensus 139 r~~~v~~~~~~~ 150 (425)
+.|.|.++..+.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999997654
No 247
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.3e-16 Score=127.71 Aligned_cols=83 Identities=16% Similarity=0.332 Sum_probs=74.3
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCc-------
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKI------- 136 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~------- 136 (425)
..+...++|||+|||+++|+++|+++|+.||+|++|+|+.++ +++++|||||+|.+.++|++||+.++ ..|
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 345567899999999999999999999999999999999998 99999999999999999999999877 666
Q ss_pred -CCceEEEEeccc
Q 014397 137 -DGRVTVTNLAVA 148 (425)
Q Consensus 137 -~gr~~~v~~~~~ 148 (425)
.++.|.|.++..
T Consensus 99 ~~~~~l~v~~a~p 111 (114)
T 1x5o_A 99 APTEPLLCKFSGP 111 (114)
T ss_dssp CCSSCBEEEECCC
T ss_pred CCCCceeEEccCC
Confidence 467788887753
No 248
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.5e-16 Score=125.30 Aligned_cols=80 Identities=14% Similarity=0.191 Sum_probs=70.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC---CCcCCceEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS---KKIDGRVTV 142 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~---~~~~gr~~~ 142 (425)
...+.++|||+|||+++|+++|+++|++||.|++|+++++ ||||||+|++.++|++||+.++ ..+.++.|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3456789999999999999999999999999999988764 7899999999999999999753 569999999
Q ss_pred EEecccCCC
Q 014397 143 TNLAVAGNS 151 (425)
Q Consensus 143 v~~~~~~~~ 151 (425)
|.++..+..
T Consensus 85 V~~a~~~~~ 93 (101)
T 2cq1_A 85 IQYSNHKEL 93 (101)
T ss_dssp EEECSCSSC
T ss_pred EEEcCcccC
Confidence 999976544
No 249
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.4e-16 Score=131.36 Aligned_cols=79 Identities=20% Similarity=0.258 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCe----eEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEE
Q 014397 68 PTQRKLFIRGLGWDTTTEGLRSIFSAYGEL----EEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVT 143 (425)
Q Consensus 68 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i----~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v 143 (425)
...++|||+|||+++|+++|+++|++||+| ++|+|+.++ +++++|||||+|.++++|++||+.....|.+|.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 356789999999999999999999999975 689999984 899999999999999999999998558888998877
Q ss_pred Eecc
Q 014397 144 NLAV 147 (425)
Q Consensus 144 ~~~~ 147 (425)
..+.
T Consensus 100 ~~a~ 103 (123)
T 2dha_A 100 FRST 103 (123)
T ss_dssp EEEC
T ss_pred EECC
Confidence 7653
No 250
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=7.2e-16 Score=122.35 Aligned_cols=80 Identities=20% Similarity=0.261 Sum_probs=70.8
Q ss_pred CCCcccceEEEeecCCcccHHHHHHHHhhc--CCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEE
Q 014397 158 PVDVSLRKIFVGNVPNDMSADKLLAHFACY--GEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQL 234 (425)
Q Consensus 158 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~--G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i 234 (425)
......++|||+|||+++|+++|+++|++| |.|.+|.+. ++||||+|.+.++|++||+.+ +..|++++|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 344567899999999999999999999999 999998875 679999999999999999975 689999999
Q ss_pred EEEEcccCCCC
Q 014397 235 NCRLADNKKAK 245 (425)
Q Consensus 235 ~v~~a~~~~~~ 245 (425)
.|.+++++...
T Consensus 82 ~v~~a~~~~~~ 92 (99)
T 2cpd_A 82 EVTLAKPVDKD 92 (99)
T ss_dssp EEECCCCCCCC
T ss_pred EEEECCCCCCC
Confidence 99999876543
No 251
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=4.1e-16 Score=123.76 Aligned_cols=81 Identities=30% Similarity=0.416 Sum_probs=72.8
Q ss_pred CcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEE
Q 014397 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRL 238 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~ 238 (425)
....++|||+|||+++|+++|+++|++||.|++|.|.++ ++||||+|.+.++|++|++.+ +..|++++|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 445689999999999999999999999999999999865 789999999999999999885 6889999999999
Q ss_pred cccCCCCC
Q 014397 239 ADNKKAKP 246 (425)
Q Consensus 239 a~~~~~~~ 246 (425)
++.+....
T Consensus 86 a~~~~~~~ 93 (99)
T 2cpj_A 86 ACHSASLT 93 (99)
T ss_dssp SSCCSCCC
T ss_pred cCCCCCCC
Confidence 98765543
No 252
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.65 E-value=2e-16 Score=138.19 Aligned_cols=119 Identities=18% Similarity=0.240 Sum_probs=96.5
Q ss_pred CCCCCCCChHHHHHHHHhhchhhHHHHHHHhhhccchhhhhhhhcccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCee
Q 014397 19 LESPNRLTPQDARKIVERLTSDQLLDVLSSAVARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELE 98 (425)
Q Consensus 19 ~~~~~~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~ 98 (425)
...++|.++++|++++ .++...+...... + ............++|||+|||+++|+++|+++|++||+|.
T Consensus 53 ~afV~f~~~~~A~~A~-~~~~~~~~g~~i~-------v--~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~ 122 (172)
T 2g4b_A 53 FAFLEFRSVDETTQAM-AFDGIIFQGQSLK-------I--RRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLK 122 (172)
T ss_dssp EEEEEESSHHHHHHHG-GGTTCEETTEECE-------E--ECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEE
T ss_pred EEEEEeCCHHHHHHHH-HhCCcEecCceee-------e--cCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCce
Confidence 3568889999999999 6776555321000 0 0011122334578899999999999999999999999999
Q ss_pred EEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecc
Q 014397 99 EAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAV 147 (425)
Q Consensus 99 ~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~ 147 (425)
+|+++.++.+++++|||||+|.+.++|++|++.++ ..+.++.|.|.++.
T Consensus 123 ~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 123 AFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 99999998899999999999999999999999877 88999999999873
No 253
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.6e-16 Score=125.80 Aligned_cols=80 Identities=19% Similarity=0.362 Sum_probs=72.7
Q ss_pred cccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEc
Q 014397 161 VSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLA 239 (425)
Q Consensus 161 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a 239 (425)
...++|||+|||+++|+++|+++|++||.|.+|+|+.+ ++||||+|.+.++|++||+.+ +..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 45689999999999999999999999999999999876 789999999999999999885 68999999999999
Q ss_pred ccCCCCC
Q 014397 240 DNKKAKP 246 (425)
Q Consensus 240 ~~~~~~~ 246 (425)
+.+....
T Consensus 97 ~~~~~~~ 103 (109)
T 1x4g_A 97 KESPDMT 103 (109)
T ss_dssp CCCCSSC
T ss_pred CCCCCCC
Confidence 8765543
No 254
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.5e-16 Score=127.46 Aligned_cols=84 Identities=24% Similarity=0.468 Sum_probs=76.0
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEE
Q 014397 64 ADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTV 142 (425)
Q Consensus 64 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~ 142 (425)
.......++|||+|||.++|+++|+++|++||+|++|+++.++ +.++|||||+|.+.++|++|++.++ ..+.++.|.
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4456678899999999999999999999999999999999985 3589999999999999999999877 889999999
Q ss_pred EEecccC
Q 014397 143 TNLAVAG 149 (425)
Q Consensus 143 v~~~~~~ 149 (425)
|.++..+
T Consensus 101 V~~a~~~ 107 (109)
T 2err_A 101 VNNATAR 107 (109)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9998653
No 255
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.65 E-value=5.5e-16 Score=128.60 Aligned_cols=82 Identities=17% Similarity=0.272 Sum_probs=72.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCce
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLR----SIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRV 140 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~----~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~ 140 (425)
...+.++|||+|||+++++++|+ ++|++||+|++|.+.. +++++|||||+|.+.++|++||+.++ ..|.++.
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 34567899999999999999876 6999999999988753 67899999999999999999999888 8899999
Q ss_pred EEEEecccCC
Q 014397 141 TVTNLAVAGN 150 (425)
Q Consensus 141 ~~v~~~~~~~ 150 (425)
|.|.++....
T Consensus 102 l~V~~a~~~~ 111 (127)
T 2a3j_A 102 LVITFSETPQ 111 (127)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEccCcc
Confidence 9999987643
No 256
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.2e-16 Score=122.91 Aligned_cols=79 Identities=22% Similarity=0.289 Sum_probs=68.8
Q ss_pred cccceEEEeecCCcccHHHHHHHHhhcCC-ceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-C-CccCCeEEEEE
Q 014397 161 VSLRKIFVGNVPNDMSADKLLAHFACYGE-IEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-I-KTVDGKQLNCR 237 (425)
Q Consensus 161 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~-v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~-~~~~gr~i~v~ 237 (425)
...++|||+|||+++|+++|+++|++||. |..+.+. +++||||+|.+.++|++||+.+ + ..|+|++|.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 45689999999999999999999999999 5555552 4799999999999999999975 5 89999999999
Q ss_pred EcccCCCCC
Q 014397 238 LADNKKAKP 246 (425)
Q Consensus 238 ~a~~~~~~~ 246 (425)
+++++..+.
T Consensus 79 ~a~~~~~~~ 87 (93)
T 2cqh_A 79 YSVSKKLRS 87 (93)
T ss_dssp ECCCCCCCC
T ss_pred EccCccccC
Confidence 998776544
No 257
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.3e-16 Score=122.43 Aligned_cols=79 Identities=22% Similarity=0.320 Sum_probs=69.2
Q ss_pred ccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEEEccc
Q 014397 162 SLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADN 241 (425)
Q Consensus 162 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~~a~~ 241 (425)
..++|||+|||+++|+++|+++|++||.|++|+|+.+ ++|||||+|++.++|++|+.. ...+++++|.|.++.+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCC
Confidence 4589999999999999999999999999999999865 689999999999999876543 4677999999999987
Q ss_pred CCCCC
Q 014397 242 KKAKP 246 (425)
Q Consensus 242 ~~~~~ 246 (425)
+....
T Consensus 78 ~~~~~ 82 (88)
T 1wf0_A 78 KHNSN 82 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 66544
No 258
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.65 E-value=2.2e-16 Score=120.57 Aligned_cols=72 Identities=21% Similarity=0.341 Sum_probs=65.2
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCc-eE
Q 014397 70 QRKLFIRGLGWDT------TTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGR-VT 141 (425)
Q Consensus 70 ~~~lfV~nLp~~~------te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr-~~ 141 (425)
.++|||+|||+++ |+++|+++|++||+|.+|+++ +.+++++|||||+|.+.++|++||+.++ ..+.++ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 789999999999999999987 3589999999999999999999999888 888888 66
Q ss_pred EE
Q 014397 142 VT 143 (425)
Q Consensus 142 ~v 143 (425)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 54
No 259
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=5.9e-16 Score=119.13 Aligned_cols=78 Identities=22% Similarity=0.378 Sum_probs=70.4
Q ss_pred CCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-C-CccCCeEE
Q 014397 157 NPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-I-KTVDGKQL 234 (425)
Q Consensus 157 ~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~-~~~~gr~i 234 (425)
+......++|||+|||+++|+++|+++|++||.|++|.|+.+ ++||||+|.+.++|++|++.+ + ..|+|++|
T Consensus 6 ~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l 79 (85)
T 2ytc_A 6 SGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRL 79 (85)
T ss_dssp CCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEEC
T ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEE
Confidence 344566789999999999999999999999999999999875 799999999999999999975 4 88999999
Q ss_pred EEEEcc
Q 014397 235 NCRLAD 240 (425)
Q Consensus 235 ~v~~a~ 240 (425)
.|++++
T Consensus 80 ~v~~ak 85 (85)
T 2ytc_A 80 NVKWGR 85 (85)
T ss_dssp CEEECC
T ss_pred EEEecC
Confidence 999874
No 260
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=8.3e-16 Score=124.11 Aligned_cols=79 Identities=15% Similarity=0.227 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCC-----ce
Q 014397 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDG-----RV 140 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~g-----r~ 140 (425)
....++|||+|||+++|+++|+++|++||+|++|+|+.+ |||||+|.+.++|++||+.++ ..|.+ +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 456789999999999999999999999999999999876 799999999999999999888 78888 99
Q ss_pred EEEEecccCCCC
Q 014397 141 TVTNLAVAGNSG 152 (425)
Q Consensus 141 ~~v~~~~~~~~~ 152 (425)
|.|.++..+...
T Consensus 85 i~V~~a~~~~~~ 96 (108)
T 1x4c_A 85 IRVKVDGPRSPS 96 (108)
T ss_dssp EEEEESSCCSCC
T ss_pred EEEEeCCCCCCC
Confidence 999998775543
No 261
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.65 E-value=1.7e-16 Score=126.76 Aligned_cols=83 Identities=25% Similarity=0.465 Sum_probs=75.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEEe
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNL 145 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~~ 145 (425)
.+...++|||+|||+++|+++|+++|+.||.|++|+++.++ +++++|||||+|.+.++|++||+ ....+.++.+.|.+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGP 82 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEE
Confidence 34456899999999999999999999999999999999998 99999999999999999999999 55889999999998
Q ss_pred cccCC
Q 014397 146 AVAGN 150 (425)
Q Consensus 146 ~~~~~ 150 (425)
+....
T Consensus 83 a~~~~ 87 (102)
T 2xs2_A 83 AIRKQ 87 (102)
T ss_dssp EEECC
T ss_pred CCcCc
Confidence 87644
No 262
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=4.7e-16 Score=122.96 Aligned_cols=81 Identities=21% Similarity=0.281 Sum_probs=71.1
Q ss_pred CCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEE
Q 014397 159 VDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCR 237 (425)
Q Consensus 159 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~ 237 (425)
.....++|||+|||+++|+++|+++|++||.|. +.|+.+ +++|||||+|.+.++|++||+.+ +..|+|+.|.|+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 344568999999999999999999999999997 666644 67899999999999999999885 689999999999
Q ss_pred EcccCCC
Q 014397 238 LADNKKA 244 (425)
Q Consensus 238 ~a~~~~~ 244 (425)
+++++..
T Consensus 90 ~a~~~~~ 96 (97)
T 2e5j_A 90 LARQQRD 96 (97)
T ss_dssp ECCCCCC
T ss_pred EcCCCCC
Confidence 9987643
No 263
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.64 E-value=9.1e-17 Score=135.35 Aligned_cols=83 Identities=17% Similarity=0.255 Sum_probs=72.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEEe
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNL 145 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~~ 145 (425)
.....++|||+|||+++|+++|+++|++|| |++|+|+.|+. ++++|||||+|+++++|++||+.....|.+|.|.|.+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEE
Confidence 345668899999999999999999999999 67999999975 9999999999999999999995544899999999988
Q ss_pred cccCC
Q 014397 146 AVAGN 150 (425)
Q Consensus 146 ~~~~~ 150 (425)
+....
T Consensus 120 a~~~~ 124 (139)
T 2hgn_A 120 NSTTG 124 (139)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 76543
No 264
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=6.7e-16 Score=120.27 Aligned_cols=78 Identities=28% Similarity=0.372 Sum_probs=70.3
Q ss_pred CcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEE
Q 014397 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRL 238 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~ 238 (425)
....++|||+|||+++|+++|+++|++||.|++|.|++ +||||+|.+.++|++||+.+ +..|+++.|.|++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 44568999999999999999999999999999999974 39999999999999999985 6899999999999
Q ss_pred cccCCCC
Q 014397 239 ADNKKAK 245 (425)
Q Consensus 239 a~~~~~~ 245 (425)
++.+..+
T Consensus 78 a~~~~~~ 84 (90)
T 2dnp_A 78 STKGQKK 84 (90)
T ss_dssp SCCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 265
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=3.6e-16 Score=124.59 Aligned_cols=77 Identities=22% Similarity=0.401 Sum_probs=70.9
Q ss_pred ceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEcccC
Q 014397 164 RKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLADNK 242 (425)
Q Consensus 164 ~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a~~~ 242 (425)
++|||+|||+++|+++|+++|++||+|++|.|+.+ +++||||+|.+.++|++|++.+ +..|+|+.|.|++++.+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999877 6899999999999999999986 58899999999999876
Q ss_pred CCC
Q 014397 243 KAK 245 (425)
Q Consensus 243 ~~~ 245 (425)
..+
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 543
No 266
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=8.1e-16 Score=119.82 Aligned_cols=78 Identities=27% Similarity=0.423 Sum_probs=70.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTN 144 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~ 144 (425)
.....++|||+|||+++|+++|+++|++||+|++|+++ ++||||+|.+.++|++||+.++ ..+.++.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 34567899999999999999999999999999999987 5799999999999999998877 78999999999
Q ss_pred ecccCCC
Q 014397 145 LAVAGNS 151 (425)
Q Consensus 145 ~~~~~~~ 151 (425)
++.....
T Consensus 76 ~a~~~~~ 82 (90)
T 2dnq_A 76 ASKNKSK 82 (90)
T ss_dssp CSSCCCC
T ss_pred ECCCCCC
Confidence 9977554
No 267
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=5.9e-16 Score=122.40 Aligned_cols=78 Identities=21% Similarity=0.268 Sum_probs=70.8
Q ss_pred CcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccC--CeEEEE
Q 014397 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVD--GKQLNC 236 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~--gr~i~v 236 (425)
....++|||+|||+++|+++|+++|++||.|++|.|..+ ++||||+|++.++|++|++.+ +..|+ ++.|.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 445689999999999999999999999999999999765 789999999999999999985 58899 999999
Q ss_pred EEcccCC
Q 014397 237 RLADNKK 243 (425)
Q Consensus 237 ~~a~~~~ 243 (425)
++++++.
T Consensus 88 ~~a~~~~ 94 (97)
T 1why_A 88 DFAKSGP 94 (97)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9998754
No 268
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.64 E-value=1.4e-16 Score=128.42 Aligned_cols=83 Identities=18% Similarity=0.218 Sum_probs=74.1
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceE
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGE---LEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVT 141 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~---i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~ 141 (425)
......++|||+|||+++|+++|+++|+.||. |.+|+|+.++. ++++|||||+|.+.++|++||+.....+.++.|
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i 84 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYV 84 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEE
Confidence 34557789999999999999999999999988 89999999986 999999999999999999999944488899999
Q ss_pred EEEeccc
Q 014397 142 VTNLAVA 148 (425)
Q Consensus 142 ~v~~~~~ 148 (425)
.|.++..
T Consensus 85 ~V~~a~~ 91 (107)
T 2lmi_A 85 EVYEINN 91 (107)
T ss_dssp CCEECCH
T ss_pred EEEECCH
Confidence 8887754
No 269
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.64 E-value=4e-16 Score=121.34 Aligned_cols=80 Identities=24% Similarity=0.307 Sum_probs=64.5
Q ss_pred CCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEEE
Q 014397 159 VDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRL 238 (425)
Q Consensus 159 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~~ 238 (425)
......+|||+|||+++|+++|+++|++||.|++|+|+.+ +||||||+|+++++|+++.. ....+++++|.|.+
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~-~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCG-EDLIIKGISVHISN 80 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTT-CEEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcC-CCcccCCEEEEEEE
Confidence 3455689999999999999999999999999999999875 69999999999999996532 24567899999999
Q ss_pred cccCCC
Q 014397 239 ADNKKA 244 (425)
Q Consensus 239 a~~~~~ 244 (425)
+.++..
T Consensus 81 a~~k~~ 86 (89)
T 3d2w_A 81 AEPKHN 86 (89)
T ss_dssp CC----
T ss_pred cCCCCc
Confidence 987654
No 270
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=6.4e-17 Score=128.94 Aligned_cols=82 Identities=20% Similarity=0.303 Sum_probs=74.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEe
Q 014397 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNL 145 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~ 145 (425)
....++|||+|||+++|+++|+++|++||.|.+ +++.++.+++++|||||+|.+.++|++||+ ++ ..|.++.|.|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 446789999999999999999999999999988 777777789999999999999999999999 66 899999999999
Q ss_pred cccCC
Q 014397 146 AVAGN 150 (425)
Q Consensus 146 ~~~~~ 150 (425)
+..+.
T Consensus 92 a~~~~ 96 (101)
T 1fj7_A 92 PKGRD 96 (101)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 87644
No 271
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.64 E-value=2.3e-16 Score=120.39 Aligned_cols=71 Identities=23% Similarity=0.348 Sum_probs=65.7
Q ss_pred ceEEEeecCCcc------cHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCe-EEE
Q 014397 164 RKIFVGNVPNDM------SADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGK-QLN 235 (425)
Q Consensus 164 ~~l~V~nL~~~~------te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr-~i~ 235 (425)
++|||+|||+++ |+++|+++|++||.|++|.|+ +.+++++|||||+|.+.++|++||+.+ +..|+|+ +|.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 789999999999999999987 468999999999999999999999986 5899999 887
Q ss_pred E
Q 014397 236 C 236 (425)
Q Consensus 236 v 236 (425)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 272
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=4.6e-16 Score=124.12 Aligned_cols=84 Identities=31% Similarity=0.497 Sum_probs=75.4
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEE
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVT 143 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v 143 (425)
......++|||+|||+++|+++|+++|+.| .+|+++.++.+++++|||||+|.+.++|++||+.++ ..|.++.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345677899999999999999999999977 478889998899999999999999999999999877 8899999999
Q ss_pred EecccCCC
Q 014397 144 NLAVAGNS 151 (425)
Q Consensus 144 ~~~~~~~~ 151 (425)
.++..+..
T Consensus 87 ~~a~~~~~ 94 (102)
T 2fc8_A 87 DWAKPKGE 94 (102)
T ss_dssp EECCCCCS
T ss_pred EEecCCCC
Confidence 99977554
No 273
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=4.7e-16 Score=123.88 Aligned_cols=82 Identities=29% Similarity=0.436 Sum_probs=73.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTN 144 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~ 144 (425)
.+...++|||+|||+++|+++|+++|++||.| +++.+ .+++++|||||+|.+.++|++||+.++ ..|.++.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 45678999999999999999999999999976 56666 689999999999999999999999877 88999999999
Q ss_pred ecccCCC
Q 014397 145 LAVAGNS 151 (425)
Q Consensus 145 ~~~~~~~ 151 (425)
++.....
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 9977543
No 274
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.64 E-value=8.9e-16 Score=153.80 Aligned_cols=84 Identities=31% Similarity=0.574 Sum_probs=78.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEe
Q 014397 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNL 145 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~ 145 (425)
....++|||+|||++||+++|+++|+.||+|++|+|+.++.+++++|||||+|.+.++|++||+.++ ..|.++.|.|.+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999999999999999999999999999999888 899999999999
Q ss_pred cccCC
Q 014397 146 AVAGN 150 (425)
Q Consensus 146 ~~~~~ 150 (425)
+....
T Consensus 179 a~~~~ 183 (437)
T 3pgw_S 179 ERGRT 183 (437)
T ss_pred eCCCC
Confidence 87543
No 275
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.2e-15 Score=119.96 Aligned_cols=80 Identities=24% Similarity=0.444 Sum_probs=69.7
Q ss_pred ccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEEEccc
Q 014397 162 SLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADN 241 (425)
Q Consensus 162 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~~a~~ 241 (425)
..++|||+|||+++|+++|+++|++||.|.+| +.++.+++ ||||+|.++++|++||+.++..|+|+.|.|+++..
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCc
Confidence 45799999999999999999999999999987 55666665 99999999999999999336999999999998876
Q ss_pred CCCCC
Q 014397 242 KKAKP 246 (425)
Q Consensus 242 ~~~~~ 246 (425)
+..+.
T Consensus 82 ~~~~~ 86 (94)
T 2e5g_A 82 KEFQS 86 (94)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 65544
No 276
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=8.6e-16 Score=121.42 Aligned_cols=79 Identities=19% Similarity=0.361 Sum_probs=70.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcC--CceEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKID--GRVTV 142 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~--gr~~~ 142 (425)
.....++|||+|||+++|+++|+++|++||+|++|+++.+ ++||||+|.+.++|++||+.++ ..+. ++.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 4456789999999999999999999999999999998754 6799999999999999999877 8888 89999
Q ss_pred EEecccCC
Q 014397 143 TNLAVAGN 150 (425)
Q Consensus 143 v~~~~~~~ 150 (425)
|.++..+.
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99987643
No 277
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.1e-16 Score=129.00 Aligned_cols=86 Identities=23% Similarity=0.364 Sum_probs=73.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTN 144 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~ 144 (425)
.....++|||+|||+++|+++|+++|++||.|.+|.+..+..+++++|||||+|.+.++|++||+.++ ..|.++.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34467899999999999999999999999999544333333388899999999999999999999877 88999999999
Q ss_pred ecccCCC
Q 014397 145 LAVAGNS 151 (425)
Q Consensus 145 ~~~~~~~ 151 (425)
++.....
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpx_A 101 FGKNKKQ 107 (115)
T ss_dssp ECCCCSC
T ss_pred EccCCCC
Confidence 9977554
No 278
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=3.9e-16 Score=126.06 Aligned_cols=79 Identities=15% Similarity=0.248 Sum_probs=70.2
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC---CCcCCceEE
Q 014397 67 DPTQRKLFIRGLGWD-TTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS---KKIDGRVTV 142 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~-~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~---~~~~gr~~~ 142 (425)
....++|||+|||++ +|+++|+++|++||+|.+|+|++ +||||||+|.+.++|++||+.++ ..|.|+.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456789999999998 99999999999999999999974 47899999999999999999764 468999999
Q ss_pred EEecccCCC
Q 014397 143 TNLAVAGNS 151 (425)
Q Consensus 143 v~~~~~~~~ 151 (425)
|.++.....
T Consensus 96 V~~a~~~~~ 104 (112)
T 1x4f_A 96 VDLSEKYKK 104 (112)
T ss_dssp EEEECSCSS
T ss_pred EEECccccc
Confidence 999876543
No 279
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.63 E-value=5.1e-16 Score=134.91 Aligned_cols=119 Identities=18% Similarity=0.291 Sum_probs=95.9
Q ss_pred CCCCCCCChHHHHHHHHhhchhhHHHHHHHhhhccchhhhhhhhcccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCee
Q 014397 19 LESPNRLTPQDARKIVERLTSDQLLDVLSSAVARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELE 98 (425)
Q Consensus 19 ~~~~~~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~ 98 (425)
...+.|.++++|+++++.++...+.... +.-............++|||+|||.++|+++|+++|++||.|+
T Consensus 47 ~afV~f~~~~~A~~a~~~l~~~~~~g~~---------l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~ 117 (168)
T 1b7f_A 47 YAFVDFTSEMDSQRAIKVLNGITVRNKR---------LKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIV 117 (168)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCEETTEE---------CEEEECCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEE
T ss_pred EEEEEECCHHHHHHHHHhcCCCEeCCcE---------EEEEecCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEE
Confidence 4667888999999999988766553210 0000111122345678999999999999999999999999999
Q ss_pred EEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCC--ceEEEEec
Q 014397 99 EAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDG--RVTVTNLA 146 (425)
Q Consensus 99 ~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~g--r~~~v~~~ 146 (425)
+|++++++.+++++|||||+|.+.++|++|++.++ ..+.+ +.|.|.++
T Consensus 118 ~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 118 QKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 99999998899999999999999999999999887 77877 88888875
No 280
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.63 E-value=8e-16 Score=124.58 Aligned_cols=76 Identities=22% Similarity=0.449 Sum_probs=68.8
Q ss_pred cccceEEEeecCCc-ccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEE
Q 014397 161 VSLRKIFVGNVPND-MSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRL 238 (425)
Q Consensus 161 ~~~~~l~V~nL~~~-~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~ 238 (425)
...++|||+|||++ +|+++|+++|++||.|++|.| +++||||+|++.++|++||+.+ +..|+++.|.|++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34589999999999 999999999999999999998 4799999999999999999885 6899999999999
Q ss_pred cccCCC
Q 014397 239 ADNKKA 244 (425)
Q Consensus 239 a~~~~~ 244 (425)
++....
T Consensus 97 a~~~~~ 102 (110)
T 1wf1_A 97 AGEPKP 102 (110)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 975443
No 281
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=7.5e-16 Score=124.56 Aligned_cols=80 Identities=24% Similarity=0.436 Sum_probs=72.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTN 144 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~ 144 (425)
.+...++|||+|||+++|+++|+++|++||.|++|+|+.+ ++||||+|.+.++|++||+.++ ..|.++.|.|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4556789999999999999999999999999999999876 7899999999999999998877 88999999999
Q ss_pred ecccCCC
Q 014397 145 LAVAGNS 151 (425)
Q Consensus 145 ~~~~~~~ 151 (425)
++.....
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4g_A 95 WGKESPD 101 (109)
T ss_dssp CCCCCCS
T ss_pred ecCCCCC
Confidence 9977554
No 282
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.63 E-value=6.6e-16 Score=121.79 Aligned_cols=82 Identities=23% Similarity=0.302 Sum_probs=72.0
Q ss_pred CCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEE
Q 014397 158 PVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNC 236 (425)
Q Consensus 158 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v 236 (425)
......++|||+|||+++|+++|+++|++||.|..+ ..+++++|||||+|.+.++|++||+.+ +..|+|+.|.|
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 85 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 85 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 344567899999999999999999999999988766 357889999999999999999999986 48999999999
Q ss_pred EEcccCCC
Q 014397 237 RLADNKKA 244 (425)
Q Consensus 237 ~~a~~~~~ 244 (425)
.++..+..
T Consensus 86 ~~a~~~~~ 93 (96)
T 1fjc_A 86 YYTGEKGG 93 (96)
T ss_dssp EECSSSCC
T ss_pred EEcCCCCC
Confidence 99977543
No 283
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=8.3e-16 Score=127.53 Aligned_cols=81 Identities=20% Similarity=0.243 Sum_probs=71.6
Q ss_pred CcccceEEEeecCCcccHHHHH----HHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEE
Q 014397 160 DVSLRKIFVGNVPNDMSADKLL----AHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQL 234 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~~te~~L~----~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i 234 (425)
....++|||+|||+.+++++|+ ++|++||.|.+|.|. .+++++|||||+|.+.++|++||+.+ +..|.|++|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3456899999999999999876 699999999998875 36789999999999999999999986 589999999
Q ss_pred EEEEcccCC
Q 014397 235 NCRLADNKK 243 (425)
Q Consensus 235 ~v~~a~~~~ 243 (425)
.|.+++.+.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999997653
No 284
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=6.3e-16 Score=126.09 Aligned_cols=78 Identities=27% Similarity=0.474 Sum_probs=69.3
Q ss_pred cccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCC---CCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEE
Q 014397 161 VSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQT---GKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCR 237 (425)
Q Consensus 161 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~---g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~ 237 (425)
...++|||+|||+++|+++|+++|++||+|+ +.++.++.+ ++++|||||+|+++++|++||+.+ ..++|+.|.|.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~~~~ 83 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLYLCV 83 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEEEec
Confidence 3458899999999999999999999999999 888888777 799999999999999999999987 45888888776
Q ss_pred Ecc
Q 014397 238 LAD 240 (425)
Q Consensus 238 ~a~ 240 (425)
.+.
T Consensus 84 ~~~ 86 (114)
T 2dnl_A 84 SSP 86 (114)
T ss_dssp CCS
T ss_pred cCC
Confidence 554
No 285
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.63 E-value=4.9e-16 Score=125.69 Aligned_cols=79 Identities=14% Similarity=0.122 Sum_probs=70.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYG-ELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVT 143 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v 143 (425)
.+...++|||+|||+++|+++|+++|++|| +|..|+|+.+ +++|||||+|.+.++|++||+.++ ..|.++.|.|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 455678999999999999999999999999 8999988643 489999999999999999999888 8899999999
Q ss_pred Eeccc
Q 014397 144 NLAVA 148 (425)
Q Consensus 144 ~~~~~ 148 (425)
.++..
T Consensus 100 ~~a~~ 104 (111)
T 2jvr_A 100 ERDDN 104 (111)
T ss_dssp EESCC
T ss_pred EECCC
Confidence 99864
No 286
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.62 E-value=1.1e-15 Score=134.55 Aligned_cols=83 Identities=19% Similarity=0.335 Sum_probs=76.8
Q ss_pred CcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEE
Q 014397 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRL 238 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~ 238 (425)
....++|||+|||+++|+++|+++|++||.|++|.|+.++ +++++|||||+|++.++|++||+.+ +..|+|+.|.|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999997 9999999999999999999999986 5899999999999
Q ss_pred cccCC
Q 014397 239 ADNKK 243 (425)
Q Consensus 239 a~~~~ 243 (425)
+....
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 97653
No 287
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=6.3e-16 Score=123.15 Aligned_cols=78 Identities=19% Similarity=0.264 Sum_probs=70.0
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEE
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVT 143 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v 143 (425)
..+...++|||+|||+++|+++|+++|++||.|++|+++ +++|||||+|.+.++|++||+.++ ..+.++.|.|
T Consensus 22 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 95 (101)
T 2la4_A 22 SAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRT 95 (101)
T ss_dssp TSCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCC
T ss_pred cCCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 344567899999999999999999999999999999997 357899999999999999998877 8899999999
Q ss_pred Eeccc
Q 014397 144 NLAVA 148 (425)
Q Consensus 144 ~~~~~ 148 (425)
.++..
T Consensus 96 ~~a~~ 100 (101)
T 2la4_A 96 GWGKE 100 (101)
T ss_dssp CBCCC
T ss_pred EeccC
Confidence 88754
No 288
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.42 E-value=2.8e-17 Score=134.56 Aligned_cols=85 Identities=24% Similarity=0.370 Sum_probs=78.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcC
Q 014397 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEE--------AVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKID 137 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~ 137 (425)
..+.++|||+|||+++|+++|+++|++||.|.+ |+|+.++.+++++|||||+|.+.++|++||+.++ ..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 456788999999999999999999999999999 9999998899999999999999999999999887 8899
Q ss_pred CceEEEEecccCCC
Q 014397 138 GRVTVTNLAVAGNS 151 (425)
Q Consensus 138 gr~~~v~~~~~~~~ 151 (425)
++.|.|.++..+..
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999876543
No 289
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=120.52 Aligned_cols=80 Identities=13% Similarity=0.216 Sum_probs=70.8
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEE
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVT 143 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v 143 (425)
......++|||+|||+++|+++|+++|++||.|. ++++.+ +++|||||+|.+.++|++||+.++ ..|.++.|.|
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3445678999999999999999999999999997 677654 578999999999999999998877 8899999999
Q ss_pred EecccC
Q 014397 144 NLAVAG 149 (425)
Q Consensus 144 ~~~~~~ 149 (425)
.++...
T Consensus 89 ~~a~~~ 94 (97)
T 2e5j_A 89 ALARQQ 94 (97)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 998764
No 290
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.2e-15 Score=121.13 Aligned_cols=80 Identities=28% Similarity=0.418 Sum_probs=71.9
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEE
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVT 143 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v 143 (425)
......++|||+|||+++|+++|+++|++||+|++|+++++ ++||||+|.+.++|++||+.++ ..|.++.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 83 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 83 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEE
Confidence 34556789999999999999999999999999999999854 6899999999999999998877 8899999999
Q ss_pred EecccCC
Q 014397 144 NLAVAGN 150 (425)
Q Consensus 144 ~~~~~~~ 150 (425)
.++....
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpj_A 84 RFACHSA 90 (99)
T ss_dssp EESSCCS
T ss_pred EEcCCCC
Confidence 9987644
No 291
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.6e-15 Score=116.66 Aligned_cols=76 Identities=26% Similarity=0.420 Sum_probs=69.1
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcC-C-CCcCCceEE
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEP-S-KKIDGRVTV 142 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~-~-~~~~gr~~~ 142 (425)
..+...++|||+|||+++|+++|+++|++||+|.+|+++++ ++||||+|.+.++|++|++.+ + ..+.++.|.
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~ 80 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN 80 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEE
Confidence 34567789999999999999999999999999999999864 789999999999999999987 6 789999999
Q ss_pred EEec
Q 014397 143 TNLA 146 (425)
Q Consensus 143 v~~~ 146 (425)
|.++
T Consensus 81 v~~a 84 (85)
T 2ytc_A 81 VKWG 84 (85)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9886
No 292
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.62 E-value=1.2e-15 Score=134.26 Aligned_cols=82 Identities=26% Similarity=0.443 Sum_probs=76.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEe
Q 014397 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNL 145 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~ 145 (425)
....++|||+|||+++|+++|+++|++||+|++|.|+.++ +++++|||||+|.+.++|++||+.++ ..|.++.|.|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999998 99999999999999999999999887 889999999999
Q ss_pred cccC
Q 014397 146 AVAG 149 (425)
Q Consensus 146 ~~~~ 149 (425)
+...
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 8653
No 293
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.62 E-value=2.1e-16 Score=143.62 Aligned_cols=122 Identities=21% Similarity=0.308 Sum_probs=92.6
Q ss_pred CCCCCCCChHHHHHHHHhhchhhHHHHHHHhhhccchhhhhhhhcccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCee
Q 014397 19 LESPNRLTPQDARKIVERLTSDQLLDVLSSAVARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELE 98 (425)
Q Consensus 19 ~~~~~~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~ 98 (425)
...+.|.+.++|+++++.++...+.......... ...........++|||+|||+++|+++|+++|++||.|+
T Consensus 59 ~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~-------~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~ 131 (213)
T 4f02_A 59 YAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS-------QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 131 (213)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC-------CCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEE
T ss_pred cccceeCCHHHHHHHHHHhhhhhcCCcccccccc-------cccccccccccccceECCcccccHHHHHHHHHhhcCCeE
Confidence 3567778888888888877765543211000000 000001112356899999999999999999999999999
Q ss_pred EEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecccC
Q 014397 99 EAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAVAG 149 (425)
Q Consensus 99 ~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~~~ 149 (425)
+|+|++|+ +.++|||||+|.+.++|++||+.++ ..|.++.|.|.++..+
T Consensus 132 ~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 132 SCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp EEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred EEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 99999985 4589999999999999999999877 8999999999998653
No 294
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.62 E-value=7.3e-16 Score=124.42 Aligned_cols=80 Identities=23% Similarity=0.347 Sum_probs=70.6
Q ss_pred CCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEE
Q 014397 158 PVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNC 236 (425)
Q Consensus 158 ~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v 236 (425)
......++|||+|||+++|+++|+++|++||.|++|.|+ +|||||+|.+.++|++|++.+ +..|+|+.|.|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 345567899999999999999999999999999999997 689999999999999999985 68999999999
Q ss_pred EEcccCCCC
Q 014397 237 RLADNKKAK 245 (425)
Q Consensus 237 ~~a~~~~~~ 245 (425)
.+++.+..+
T Consensus 98 ~~a~~~~~r 106 (108)
T 2jvo_A 98 VYSKLPAKR 106 (108)
T ss_dssp ESCSCCC--
T ss_pred EEecCCCCC
Confidence 999876554
No 295
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.62 E-value=8.6e-16 Score=134.30 Aligned_cols=122 Identities=23% Similarity=0.298 Sum_probs=94.2
Q ss_pred CCCCCCCChHHHHHHHHhhchhhHHHHHHHhhhccchhhhhhhhcccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCee
Q 014397 19 LESPNRLTPQDARKIVERLTSDQLLDVLSSAVARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELE 98 (425)
Q Consensus 19 ~~~~~~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~ 98 (425)
...+.|.+.++|+++++.++...+........ ...............++|||+|||+++|+++|+++|++||.|+
T Consensus 49 ~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~ 123 (175)
T 3nmr_A 49 CCFVTFYTRKAALEAQNALHNMKVLPGMHHPI-----QMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 123 (175)
T ss_dssp EEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC-----EEEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEE
T ss_pred EEEEEECCHHHHHHHHHHhcCcEEccCCccce-----EEccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEE
Confidence 45688899999999999888655432100000 0011111223344678899999999999999999999999999
Q ss_pred EEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcC---CceEEEEec
Q 014397 99 EAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKID---GRVTVTNLA 146 (425)
Q Consensus 99 ~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~---gr~~~v~~~ 146 (425)
+|++++++ +++++|||||+|.+.++|++||+.++ ..+. ++.|.|.++
T Consensus 124 ~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 124 ECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp EEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred EEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 99999996 69999999999999999999999888 4454 489999886
No 296
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.62 E-value=1.8e-15 Score=120.97 Aligned_cols=80 Identities=31% Similarity=0.473 Sum_probs=70.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTN 144 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~ 144 (425)
.....++|||+|||+++|+++|+++|++||+|++|+++ ++||||+|.+.++|++||+.++ ..|.++.|.|.
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 34567899999999999999999999999999999987 3499999999999999999877 88999999999
Q ss_pred ecccCCCCC
Q 014397 145 LAVAGNSGN 153 (425)
Q Consensus 145 ~~~~~~~~~ 153 (425)
++.......
T Consensus 79 ~a~~~~~~~ 87 (103)
T 2dgu_A 79 FAKPPDQKR 87 (103)
T ss_dssp ECCCCCCCC
T ss_pred EcCCCcccc
Confidence 997765433
No 297
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.62 E-value=7.6e-16 Score=133.48 Aligned_cols=119 Identities=28% Similarity=0.394 Sum_probs=93.9
Q ss_pred CCCCCCCChHHHHHHHHhhchhhHHHHHHHhhhccchhhhhhhhcccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCee
Q 014397 19 LESPNRLTPQDARKIVERLTSDQLLDVLSSAVARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELE 98 (425)
Q Consensus 19 ~~~~~~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~ 98 (425)
...+.|.++++|+++++.++...+....... ............++|||+|||.++|+++|+++|++||.|+
T Consensus 46 ~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v---------~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~ 116 (167)
T 1fxl_A 46 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKV---------SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 116 (167)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCEETTEECEE---------EECCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEE
T ss_pred EEEEEECCHHHHHHHHHHcCCCccCCceEEE---------EecCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEe
Confidence 3567888999999999988766553211000 0001112233567899999999999999999999999999
Q ss_pred EEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCce--EEEEec
Q 014397 99 EAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRV--TVTNLA 146 (425)
Q Consensus 99 ~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~--~~v~~~ 146 (425)
+|+++.++.+++++|||||+|.+.++|++|++.++ ..+.++. +.|.|+
T Consensus 117 ~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 117 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 99999998899999999999999999999999877 8888875 666654
No 298
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.61 E-value=8.1e-16 Score=125.64 Aligned_cols=72 Identities=15% Similarity=0.122 Sum_probs=62.3
Q ss_pred cccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEc
Q 014397 161 VSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLA 239 (425)
Q Consensus 161 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a 239 (425)
....+|||.|||+++|+++|+++|++||+|++|.|+.+ |||||+|++.++|++||+.+ +..|+|++|+|.++
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 35689999999999999999999999999999999866 89999999999999999985 68999998444333
No 299
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=6.6e-16 Score=123.01 Aligned_cols=75 Identities=21% Similarity=0.335 Sum_probs=68.6
Q ss_pred ccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEcc
Q 014397 162 SLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLAD 240 (425)
Q Consensus 162 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a~ 240 (425)
..++|||+|||+++|+++|+++|++||.|++|+|.. ++|||||+|.+.++|++|++.+ +..|+|+.|.|++++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 458999999999999999999999999999999973 4899999999999999999885 689999999999987
Q ss_pred cC
Q 014397 241 NK 242 (425)
Q Consensus 241 ~~ 242 (425)
++
T Consensus 100 ~~ 101 (101)
T 2la4_A 100 ER 101 (101)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 300
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=6.3e-16 Score=122.03 Aligned_cols=77 Identities=19% Similarity=0.364 Sum_probs=68.9
Q ss_pred CcccceEEEeecCC-cccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEE
Q 014397 160 DVSLRKIFVGNVPN-DMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCR 237 (425)
Q Consensus 160 ~~~~~~l~V~nL~~-~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~ 237 (425)
..+.++|||+|||+ ++|+++|+++|++||.|++|.|. +|||||+|.+.++|++||+.+ +..|+|++|.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34568999999999 99999999999999999999984 789999999999999999985 689999999999
Q ss_pred EcccCCC
Q 014397 238 LADNKKA 244 (425)
Q Consensus 238 ~a~~~~~ 244 (425)
+++.+..
T Consensus 79 ~a~~~~~ 85 (96)
T 2kvi_A 79 VSSSNAR 85 (96)
T ss_dssp EEECCCC
T ss_pred EcCcCCC
Confidence 9976544
No 301
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.61 E-value=3.4e-15 Score=133.33 Aligned_cols=122 Identities=16% Similarity=0.156 Sum_probs=90.6
Q ss_pred chHHHHHHHhcC--C-CCcCCceEEEEecccCCCCCC-CCCCCCcccceEEEeecCCcccHHHHHHHHhhcCCceeeeee
Q 014397 121 HIDGAMLALKEP--S-KKIDGRVTVTNLAVAGNSGNS-TNNPVDVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLG 196 (425)
Q Consensus 121 ~~e~A~~Al~~~--~-~~~~gr~~~v~~~~~~~~~~~-~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~ 196 (425)
+.+.+..|++.. . ..+......+........... .........++|||+|||+++|+++|+++|++||.|..|+|+
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 457788888776 3 233333333333311110000 000023356899999999999999999999999999999999
Q ss_pred ccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEEEcccCC
Q 014397 197 FDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKK 243 (425)
Q Consensus 197 ~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~~a~~~~ 243 (425)
++. +++++|||||+|++.++|++||+.++..|+|++|.|.+++.-.
T Consensus 143 ~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~y~ 188 (193)
T 2voo_A 143 RTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDYF 188 (193)
T ss_dssp ECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTTC-
T ss_pred ECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHHHH
Confidence 985 5899999999999999999999988889999999999986543
No 302
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.1e-15 Score=124.16 Aligned_cols=78 Identities=19% Similarity=0.169 Sum_probs=69.5
Q ss_pred ceEEEeec----CCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCC----HHH----HHHHHh--cC-CCc
Q 014397 164 RKIFVGNV----PNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKT----AEG----AQAALV--DP-IKT 228 (425)
Q Consensus 164 ~~l~V~nL----~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~----~~~----A~~A~~--~~-~~~ 228 (425)
++|||+|| |+.+++++|+++|++||+|.+|.++.|++|++++|||||+|.+ +++ |.+|+. .+ ...
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 332 888888 54 589
Q ss_pred cCCeEEEEEEccc
Q 014397 229 VDGKQLNCRLADN 241 (425)
Q Consensus 229 ~~gr~i~v~~a~~ 241 (425)
|+|++|+|.+-+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998653
No 303
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.5e-15 Score=118.46 Aligned_cols=81 Identities=20% Similarity=0.270 Sum_probs=71.5
Q ss_pred CcccceEEEeecCCcccHHHHHHHHhhcCCceee-eeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEE
Q 014397 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEG-PLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCR 237 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v-~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~ 237 (425)
....++|||+|||+++|+++|+++|++||.|++| .|+.++.++ .|||+|.+.++|++||+.+ +..|+|++|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456899999999999999999999999999999 488876644 3999999999999999975 699999999999
Q ss_pred EcccCCC
Q 014397 238 LADNKKA 244 (425)
Q Consensus 238 ~a~~~~~ 244 (425)
++.++..
T Consensus 88 ~a~~~~~ 94 (96)
T 2e44_A 88 YIPDEMA 94 (96)
T ss_dssp ECCCCCS
T ss_pred EcCcccc
Confidence 9987743
No 304
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=5.9e-15 Score=116.58 Aligned_cols=79 Identities=22% Similarity=0.319 Sum_probs=69.8
Q ss_pred CcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEE
Q 014397 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRL 238 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~ 238 (425)
....++|||+|| ++|+++|+++|++||+|++|.|. +++|||||+|.+.++|++||+.+ +..|+++.|.|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 345689999996 89999999999999999999985 45899999999999999999886 5899999999999
Q ss_pred cccCCCCC
Q 014397 239 ADNKKAKP 246 (425)
Q Consensus 239 a~~~~~~~ 246 (425)
++.+..+.
T Consensus 84 a~~~~~~~ 91 (97)
T 1x5p_A 84 ARKQPMLD 91 (97)
T ss_dssp CSSCCCCC
T ss_pred CCCCCCCC
Confidence 98765544
No 305
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.5e-15 Score=123.14 Aligned_cols=78 Identities=15% Similarity=0.147 Sum_probs=70.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEe
Q 014397 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNL 145 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~ 145 (425)
+...++|||+|||+++|+++|+++|++||.|.+|.|+. +++||||+|.+.++|++||+.++ ..|.++.|.|.|
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEW 80 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 33467899999999999999999999999999998864 57899999999999999999887 889999999999
Q ss_pred cccCC
Q 014397 146 AVAGN 150 (425)
Q Consensus 146 ~~~~~ 150 (425)
+....
T Consensus 81 a~~~~ 85 (111)
T 1whx_A 81 APIGV 85 (111)
T ss_dssp EETTT
T ss_pred CCCCc
Confidence 87643
No 306
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.4e-15 Score=117.57 Aligned_cols=79 Identities=20% Similarity=0.387 Sum_probs=71.0
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEE
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVT 143 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v 143 (425)
......++|||+|||+++|+++|+++|++||.|++|+++++ ||||+|.+.++|++||+.++ ..|.++.|.|
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 34567789999999999999999999999999999999743 99999999999999999877 8899999999
Q ss_pred EecccCCC
Q 014397 144 NLAVAGNS 151 (425)
Q Consensus 144 ~~~~~~~~ 151 (425)
.++.....
T Consensus 77 ~~a~~~~~ 84 (92)
T 2dgt_A 77 QLSTSRLR 84 (92)
T ss_dssp EESSCCCS
T ss_pred EEccCCCC
Confidence 99976543
No 307
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.4e-15 Score=121.50 Aligned_cols=78 Identities=21% Similarity=0.268 Sum_probs=68.0
Q ss_pred cccceEEE--eecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCcc-----CCe
Q 014397 161 VSLRKIFV--GNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTV-----DGK 232 (425)
Q Consensus 161 ~~~~~l~V--~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~-----~gr 232 (425)
.++++||| +||++++|+++|+++|++||+|++|.|+.+ ||||||+|++.++|++|++.+ +.+| .++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 45688999 669999999999999999999999988743 789999999999999999987 4777 689
Q ss_pred EEEEEEcccCCC
Q 014397 233 QLNCRLADNKKA 244 (425)
Q Consensus 233 ~i~v~~a~~~~~ 244 (425)
+|.|.++.....
T Consensus 97 ~l~v~~a~~~p~ 108 (114)
T 2cq2_A 97 TLYLNFVEKVQW 108 (114)
T ss_dssp ECEEEEESCCCC
T ss_pred EEEEEecccCcc
Confidence 999999965433
No 308
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.60 E-value=6.6e-16 Score=138.01 Aligned_cols=131 Identities=17% Similarity=0.211 Sum_probs=99.2
Q ss_pred CCCCCCCChHHHHHHHHhhchhhHHHHHHHhh-hccchhhhh----------hhhcccCCCCCCeEEEcCCCCCCCHHHH
Q 014397 19 LESPNRLTPQDARKIVERLTSDQLLDVLSSAV-ARHDDVLES----------VRSIADADPTQRKLFIRGLGWDTTTEGL 87 (425)
Q Consensus 19 ~~~~~~~~~e~~~~~~e~~~~~~~~~~~~~~~-~~~~~~~~~----------~~~~~~~~~~~~~lfV~nLp~~~te~~l 87 (425)
...+.|.++++|++++ .++...+........ ......... ...........++|||+|||+++|+++|
T Consensus 53 ~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l 131 (198)
T 2yh0_A 53 FAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQV 131 (198)
T ss_dssp EEEEEESCSHHHHHHG-GGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHH
T ss_pred EEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHH
Confidence 4668889999999999 677655533210000 000000000 0001112356789999999999999999
Q ss_pred HHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecccCC
Q 014397 88 RSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAVAGN 150 (425)
Q Consensus 88 ~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~~~~ 150 (425)
+++|++||.|.+|+++.++.+++++|||||+|.+.++|++||+.++ ..|.++.|.|.++....
T Consensus 132 ~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 132 KELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp HHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred HHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 9999999999999999998899999999999999999999999877 88999999999987643
No 309
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=3.2e-15 Score=116.38 Aligned_cols=77 Identities=25% Similarity=0.438 Sum_probs=70.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTN 144 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~ 144 (425)
.+...++|||+|||+++|+++|+++|++||.|++|+++++ ||||+|.+.++|++||+.++ ..+.++.|.|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4567789999999999999999999999999999999743 99999999999999999877 88999999999
Q ss_pred ecccCC
Q 014397 145 LAVAGN 150 (425)
Q Consensus 145 ~~~~~~ 150 (425)
++....
T Consensus 77 ~a~~~~ 82 (90)
T 2dnp_A 77 LSTKGQ 82 (90)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 997654
No 310
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.60 E-value=3.1e-15 Score=118.24 Aligned_cols=77 Identities=23% Similarity=0.413 Sum_probs=68.2
Q ss_pred ccCCCCCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceE
Q 014397 64 ADADPTQRKLFIRGLGW-DTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVT 141 (425)
Q Consensus 64 ~~~~~~~~~lfV~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~ 141 (425)
.......++|||+|||+ ++|+++|+++|++||.|.+|++. +|||||+|.+.++|++||+.++ ..+.++.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34566789999999998 99999999999999999999983 7899999999999999999877 78899999
Q ss_pred EEEeccc
Q 014397 142 VTNLAVA 148 (425)
Q Consensus 142 ~v~~~~~ 148 (425)
.|.++..
T Consensus 88 ~V~~a~~ 94 (97)
T 2xnq_A 88 ILEVSSS 94 (97)
T ss_dssp EEEECCC
T ss_pred EEEecCC
Confidence 9999865
No 311
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.60 E-value=9e-16 Score=130.39 Aligned_cols=86 Identities=22% Similarity=0.306 Sum_probs=73.2
Q ss_pred CcccceEEEeecCCcccHHHHHHHHhhcCCceee--eeecc---CCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeE
Q 014397 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEG--PLGFD---KQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQ 233 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v--~i~~d---~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~ 233 (425)
....++|||+|||+++|+++|+++|++||.|..| .++.| ..+++++|||||+|.+.++|++||+.+ +..|+|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 3456899999999999999999999999999886 22222 357899999999999999999999985 68999999
Q ss_pred EEEEEcccCCCC
Q 014397 234 LNCRLADNKKAK 245 (425)
Q Consensus 234 i~v~~a~~~~~~ 245 (425)
|.|.+++....+
T Consensus 122 l~V~~a~~~~~~ 133 (143)
T 3egn_A 122 MVVQFARSARPK 133 (143)
T ss_dssp CEEEECCCSCC-
T ss_pred EEEEECCCCCCc
Confidence 999999766544
No 312
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.60 E-value=9.4e-16 Score=121.10 Aligned_cols=82 Identities=21% Similarity=0.270 Sum_probs=73.0
Q ss_pred CcccceEEEeecCCcccHHHHH----HHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEE
Q 014397 160 DVSLRKIFVGNVPNDMSADKLL----AHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQL 234 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~~te~~L~----~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i 234 (425)
....++|||+|||+++|+++|+ ++|++||.|.+|.|.. +++++|||||+|.+.++|++|++.+ +..|+|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3456899999999999999999 9999999999999873 5778999999999999999999985 689999999
Q ss_pred EEEEcccCCC
Q 014397 235 NCRLADNKKA 244 (425)
Q Consensus 235 ~v~~a~~~~~ 244 (425)
.|.+++.+..
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999987543
No 313
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.59 E-value=2.1e-15 Score=121.66 Aligned_cols=79 Identities=20% Similarity=0.443 Sum_probs=70.3
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEE
Q 014397 64 ADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTV 142 (425)
Q Consensus 64 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~ 142 (425)
...+...++|||+|||+++|+++|+++|++||.|++|+++ +|||||+|.+.++|++|++.++ ..+.++.|.
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 4456678999999999999999999999999999999997 6899999999999999999877 889999999
Q ss_pred EEecccCC
Q 014397 143 TNLAVAGN 150 (425)
Q Consensus 143 v~~~~~~~ 150 (425)
|.++....
T Consensus 97 V~~a~~~~ 104 (108)
T 2jvo_A 97 VVYSKLPA 104 (108)
T ss_dssp EESCSCCC
T ss_pred EEEecCCC
Confidence 99987643
No 314
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.59 E-value=4.2e-16 Score=135.39 Aligned_cols=118 Identities=22% Similarity=0.354 Sum_probs=92.0
Q ss_pred CCCCCCCCChHHHHHHHHhh---chhhHHHHHHHhhhccchhhhhhhhcccCCCCCCeEEEcCCCCCCCHHHHHHHHhhc
Q 014397 18 DLESPNRLTPQDARKIVERL---TSDQLLDVLSSAVARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAY 94 (425)
Q Consensus 18 ~~~~~~~~~~e~~~~~~e~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~ 94 (425)
....+.|.++++|+++++.. +...+. ....... ......++|||+|||+++|+++|+++|+.|
T Consensus 46 g~afV~f~~~~~a~~A~~~~~~~~g~~i~------v~~~~~~--------~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~ 111 (167)
T 2cjk_A 46 GFGFLSFEKPSSVDEVVKTQHILDGKVID------PKRAIPR--------DEQDKTGKIFVGGIGPDVRPKEFEEFFSQW 111 (167)
T ss_dssp SCEEEEESSTHHHHHHHHSCCEETTEECC------CEECCCH--------HHHHHCEEEEEEEECTTCCHHHHHHHHHTT
T ss_pred ceEEEEEccHHHHHHHHhcccccCCeEcc------cccccch--------hhccCCCeEEECCCCCCCCHHHHHHHHHhC
Confidence 34567888999999998852 111110 0000000 011235689999999999999999999999
Q ss_pred CCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEEecccC
Q 014397 95 GELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLAVAG 149 (425)
Q Consensus 95 G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~~~~~~ 149 (425)
|.|++|+++.++.+++++|||||+|.+.++|++|++.....+.++.|.|.++.++
T Consensus 112 G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 112 GTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp SCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCCC
T ss_pred ccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCCC
Confidence 9999999999988999999999999999999999995448999999999998653
No 315
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.5e-15 Score=123.89 Aligned_cols=77 Identities=21% Similarity=0.326 Sum_probs=69.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCC---CCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEE
Q 014397 68 PTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKAT---GKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTN 144 (425)
Q Consensus 68 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~---g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~ 144 (425)
...++|||+|||+++|+++|+++|++||+|. +.++.++.+ ++++|||||+|.++++|++||+.++ .++++.+.+.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~-~~~G~~~~~~ 83 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL-EEDGKLYLCV 83 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE-EETTEEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh-hcCCcEEEec
Confidence 4568899999999999999999999999999 888888777 7999999999999999999999884 4788888776
Q ss_pred ec
Q 014397 145 LA 146 (425)
Q Consensus 145 ~~ 146 (425)
.+
T Consensus 84 ~~ 85 (114)
T 2dnl_A 84 SS 85 (114)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 316
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.4e-15 Score=121.53 Aligned_cols=82 Identities=15% Similarity=0.222 Sum_probs=67.9
Q ss_pred ccCCCCCCeEEE--cCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCc----
Q 014397 64 ADADPTQRKLFI--RGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKI---- 136 (425)
Q Consensus 64 ~~~~~~~~~lfV--~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~---- 136 (425)
.....+.++||| +||++++|+++|+++|++||+|++|.|+. .||||||+|.+.++|++|++.++ ..+
T Consensus 19 ~~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~l 92 (114)
T 2cq2_A 19 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDL 92 (114)
T ss_dssp CCCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred cCCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEcccc
Confidence 334456788999 77999999999999999999999988763 37899999999999999999988 655
Q ss_pred -CCceEEEEecccCCC
Q 014397 137 -DGRVTVTNLAVAGNS 151 (425)
Q Consensus 137 -~gr~~~v~~~~~~~~ 151 (425)
.++.+.|.++....+
T Consensus 93 g~g~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 93 GQKITLYLNFVEKVQW 108 (114)
T ss_dssp SCEEECEEEEESCCCC
T ss_pred CCCcEEEEEecccCcc
Confidence 467777877765443
No 317
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=5.5e-15 Score=116.04 Aligned_cols=78 Identities=17% Similarity=0.345 Sum_probs=68.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEe
Q 014397 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNL 145 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~ 145 (425)
....++|||+|||+++|+++|+++|++||+|.+| +.++.+++ ||||+|.+.++|++||+ ++ ..|.++.|.|.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3456789999999999999999999999999987 56655665 99999999999999999 66 889999999998
Q ss_pred cccCC
Q 014397 146 AVAGN 150 (425)
Q Consensus 146 ~~~~~ 150 (425)
+....
T Consensus 79 a~~~~ 83 (94)
T 2e5g_A 79 REQKE 83 (94)
T ss_dssp SCCSC
T ss_pred CCcCC
Confidence 76544
No 318
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.9e-15 Score=122.55 Aligned_cols=77 Identities=17% Similarity=0.089 Sum_probs=69.7
Q ss_pred cccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEc
Q 014397 161 VSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLA 239 (425)
Q Consensus 161 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a 239 (425)
...++|||+|||+++|+++|+++|++||.|++|.|+. +++||||+|.+.++|++||+.+ +..|+++.|.|.++
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3457999999999999999999999999999999874 4789999999999999999986 58999999999999
Q ss_pred ccCC
Q 014397 240 DNKK 243 (425)
Q Consensus 240 ~~~~ 243 (425)
....
T Consensus 82 ~~~~ 85 (111)
T 1whx_A 82 PIGV 85 (111)
T ss_dssp ETTT
T ss_pred CCCc
Confidence 7643
No 319
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.59 E-value=1.7e-15 Score=117.71 Aligned_cols=80 Identities=21% Similarity=0.251 Sum_probs=63.0
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEE
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTN 144 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~ 144 (425)
..+...++|||+|||+++|+++|+++|++||+|++|+|+++ +||||||+|.+.++|+++.. ....+.++.+.|.
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~-~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCG-EDLIIKGISVHIS 79 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTT-CEEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcC-CCcccCCEEEEEE
Confidence 34567789999999999999999999999999999999874 79999999999999995433 2344568899998
Q ss_pred ecccCC
Q 014397 145 LAVAGN 150 (425)
Q Consensus 145 ~~~~~~ 150 (425)
++..+.
T Consensus 80 ~a~~k~ 85 (89)
T 3d2w_A 80 NAEPKH 85 (89)
T ss_dssp ECC---
T ss_pred EcCCCC
Confidence 886543
No 320
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.9e-15 Score=122.87 Aligned_cols=78 Identities=18% Similarity=0.178 Sum_probs=69.7
Q ss_pred CeEEEcCC----CCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecc----hHH----HHHHHh--cCC-CC
Q 014397 71 RKLFIRGL----GWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKH----IDG----AMLALK--EPS-KK 135 (425)
Q Consensus 71 ~~lfV~nL----p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~----~e~----A~~Al~--~~~-~~ 135 (425)
++|||+|| |+.+++++|+++|++||+|.+|.++.|+.|++++|||||+|.+ +++ |.+|++ .++ ..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999999999999999999996 333 889988 556 88
Q ss_pred cCCceEEEEeccc
Q 014397 136 IDGRVTVTNLAVA 148 (425)
Q Consensus 136 ~~gr~~~v~~~~~ 148 (425)
|.|+.+.|.+...
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998754
No 321
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.59 E-value=1.4e-15 Score=119.95 Aligned_cols=80 Identities=28% Similarity=0.394 Sum_probs=71.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTN 144 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~ 144 (425)
.....++|||+|||+++|+++|+++|+.||.|..+ ..+++++|||||+|.+.++|++||+.++ ..|.++.|.|.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44567899999999999999999999999988665 2478899999999999999999999888 88999999999
Q ss_pred ecccCC
Q 014397 145 LAVAGN 150 (425)
Q Consensus 145 ~~~~~~ 150 (425)
++..+.
T Consensus 87 ~a~~~~ 92 (96)
T 1fjc_A 87 YTGEKG 92 (96)
T ss_dssp ECSSSC
T ss_pred EcCCCC
Confidence 987644
No 322
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.58 E-value=3.1e-15 Score=118.03 Aligned_cols=78 Identities=24% Similarity=0.411 Sum_probs=68.7
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEE
Q 014397 66 ADPTQRKLFIRGLGW-DTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVT 143 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v 143 (425)
...+.++|||+|||+ ++|+++|+++|++||+|.+|++. +|||||+|.+.++|++||+.++ ..+.++.|.|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345678999999998 99999999999999999999984 6899999999999999999877 8889999999
Q ss_pred EecccCCC
Q 014397 144 NLAVAGNS 151 (425)
Q Consensus 144 ~~~~~~~~ 151 (425)
.++.....
T Consensus 78 ~~a~~~~~ 85 (96)
T 2kvi_A 78 EVSSSNAR 85 (96)
T ss_dssp EEEECCCC
T ss_pred EEcCcCCC
Confidence 99976543
No 323
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.58 E-value=1.4e-15 Score=120.09 Aligned_cols=81 Identities=21% Similarity=0.348 Sum_probs=72.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceE
Q 014397 67 DPTQRKLFIRGLGWDTTTEGLR----SIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVT 141 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~l~----~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~ 141 (425)
....++|||+|||+++|+++|+ ++|++||.|.+|+++. +++++|||||+|.+.++|++|++.++ ..+.++.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4567899999999999999999 9999999999998873 56789999999999999999999877 88999999
Q ss_pred EEEecccCC
Q 014397 142 VTNLAVAGN 150 (425)
Q Consensus 142 ~v~~~~~~~ 150 (425)
.|.++....
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999987643
No 324
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.58 E-value=3.6e-15 Score=120.70 Aligned_cols=77 Identities=23% Similarity=0.413 Sum_probs=69.3
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEE
Q 014397 66 ADPTQRKLFIRGLGWD-TTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVT 143 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~-~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v 143 (425)
.....++|||+|||++ +|+++|+++|++||+|++|++ +++||||+|.+.++|++||+.++ ..|.++.|.|
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3445689999999999 999999999999999999998 57899999999999999998877 8899999999
Q ss_pred EecccCC
Q 014397 144 NLAVAGN 150 (425)
Q Consensus 144 ~~~~~~~ 150 (425)
.++....
T Consensus 95 ~~a~~~~ 101 (110)
T 1wf1_A 95 NMAGEPK 101 (110)
T ss_dssp EESCCCC
T ss_pred EECCCCC
Confidence 9987543
No 325
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.58 E-value=4.5e-15 Score=117.34 Aligned_cols=76 Identities=20% Similarity=0.385 Sum_probs=68.5
Q ss_pred CCcccceEEEeecCC-cccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEE
Q 014397 159 VDVSLRKIFVGNVPN-DMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNC 236 (425)
Q Consensus 159 ~~~~~~~l~V~nL~~-~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v 236 (425)
.....++|||+|||+ ++++++|+++|++||.|.+|.|. +|||||+|.+.++|++|++.+ +..|+|++|.|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344568999999998 99999999999999999999983 789999999999999999975 68999999999
Q ss_pred EEcccC
Q 014397 237 RLADNK 242 (425)
Q Consensus 237 ~~a~~~ 242 (425)
++++.+
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 998754
No 326
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=7e-15 Score=116.58 Aligned_cols=79 Identities=27% Similarity=0.418 Sum_probs=70.0
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHhhc--CCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceE
Q 014397 65 DADPTQRKLFIRGLGWDTTTEGLRSIFSAY--GELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVT 141 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~ 141 (425)
+.....++|||+|||+++|+++|+++|++| |.|.+|+++ ++||||+|.+.++|++||+.++ ..|.++.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 345567899999999999999999999999 999998874 5699999999999999999777 88999999
Q ss_pred EEEecccCCC
Q 014397 142 VTNLAVAGNS 151 (425)
Q Consensus 142 ~v~~~~~~~~ 151 (425)
.|.++.....
T Consensus 82 ~v~~a~~~~~ 91 (99)
T 2cpd_A 82 EVTLAKPVDK 91 (99)
T ss_dssp EEECCCCCCC
T ss_pred EEEECCCCCC
Confidence 9999976543
No 327
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.58 E-value=2.7e-15 Score=122.44 Aligned_cols=80 Identities=21% Similarity=0.314 Sum_probs=72.2
Q ss_pred cccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEc
Q 014397 161 VSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLA 239 (425)
Q Consensus 161 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a 239 (425)
...++|||+|||+++|+++|+++|++||.|.+|.|+.+ ++++|||||+|.+.++|++|++.+ +..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 34589999999999999999999999999999999865 455999999999999999999975 68999999999999
Q ss_pred ccCC
Q 014397 240 DNKK 243 (425)
Q Consensus 240 ~~~~ 243 (425)
.++.
T Consensus 83 ~~~~ 86 (115)
T 3lqv_A 83 NANR 86 (115)
T ss_dssp CHHH
T ss_pred cCCh
Confidence 7643
No 328
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.57 E-value=5.5e-15 Score=114.56 Aligned_cols=75 Identities=21% Similarity=0.244 Sum_probs=68.1
Q ss_pred ccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEcc
Q 014397 162 SLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLAD 240 (425)
Q Consensus 162 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a~ 240 (425)
..++|||+|||+++|+++|+++|++| .|++|+|. +++|||||+|.++++|++|++.+ +..|+|++|.|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 34789999999999999999999999 99999884 56999999999999999999985 589999999999986
Q ss_pred cCC
Q 014397 241 NKK 243 (425)
Q Consensus 241 ~~~ 243 (425)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 653
No 329
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=5e-15 Score=116.70 Aligned_cols=79 Identities=24% Similarity=0.196 Sum_probs=70.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEE-EEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEE
Q 014397 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEA-VVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTN 144 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v-~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~ 144 (425)
....++|||+|||+++|+++|+++|++||+|++| .|+.++.++ .|||+|.+.++|++||+.++ ..|.++.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3457889999999999999999999999999999 488776544 39999999999999999777 88999999999
Q ss_pred ecccC
Q 014397 145 LAVAG 149 (425)
Q Consensus 145 ~~~~~ 149 (425)
++..+
T Consensus 88 ~a~~~ 92 (96)
T 2e44_A 88 YIPDE 92 (96)
T ss_dssp ECCCC
T ss_pred EcCcc
Confidence 98765
No 330
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.9e-15 Score=116.59 Aligned_cols=79 Identities=23% Similarity=0.413 Sum_probs=68.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC--CCcCCceEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGE-LEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS--KKIDGRVTV 142 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~-i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~--~~~~gr~~~ 142 (425)
.....++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|++||+.++ ..+.++.|.
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 3456789999999999999999999999999 6665552 47899999999999999999776 679999999
Q ss_pred EEecccCCC
Q 014397 143 TNLAVAGNS 151 (425)
Q Consensus 143 v~~~~~~~~ 151 (425)
|.++..+..
T Consensus 77 v~~a~~~~~ 85 (93)
T 2cqh_A 77 VDYSVSKKL 85 (93)
T ss_dssp EEECCCCCC
T ss_pred EEEccCccc
Confidence 999976544
No 331
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.56 E-value=8.8e-15 Score=125.55 Aligned_cols=79 Identities=18% Similarity=0.116 Sum_probs=69.8
Q ss_pred cccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCC--eEEEEE
Q 014397 161 VSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDG--KQLNCR 237 (425)
Q Consensus 161 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~g--r~i~v~ 237 (425)
....+|||+||++.+|+++|+++|++||+|++|.|+.+ ++++||||+|++.++|++|++.+ +..|.+ ++|+|+
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 34577999999999999999999999999999999744 25899999999999999999997 588855 999999
Q ss_pred EcccCC
Q 014397 238 LADNKK 243 (425)
Q Consensus 238 ~a~~~~ 243 (425)
+++.+.
T Consensus 120 ~Ak~~~ 125 (164)
T 1sjr_A 120 FSKLTS 125 (164)
T ss_dssp ECSSSS
T ss_pred EecCCc
Confidence 998764
No 332
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.56 E-value=3.9e-15 Score=115.43 Aligned_cols=74 Identities=16% Similarity=0.271 Sum_probs=67.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecc
Q 014397 69 TQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAV 147 (425)
Q Consensus 69 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~ 147 (425)
..++|||+|||+++|+++|+++|++| +|.+|++. +++|||||+|.+.++|++|++.++ ..+.++.+.|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 56789999999999999999999999 99999884 579999999999999999999887 88999999999986
Q ss_pred cC
Q 014397 148 AG 149 (425)
Q Consensus 148 ~~ 149 (425)
..
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 333
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.3e-15 Score=115.82 Aligned_cols=78 Identities=22% Similarity=0.278 Sum_probs=66.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEEecc
Q 014397 68 PTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLAV 147 (425)
Q Consensus 68 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~~~~ 147 (425)
...++|||+|||+++|+++|+++|++||+|++|+|+.+ ++|||||+|.+.++|++|+.. ...+.++.|.|.++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecC
Confidence 35689999999999999999999999999999999864 789999999999999876544 355688899998887
Q ss_pred cCCC
Q 014397 148 AGNS 151 (425)
Q Consensus 148 ~~~~ 151 (425)
.+..
T Consensus 77 ~~~~ 80 (88)
T 1wf0_A 77 PKHN 80 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 334
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.56 E-value=1.5e-15 Score=128.92 Aligned_cols=85 Identities=22% Similarity=0.367 Sum_probs=72.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEE--E---eecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCc
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAV--V---ILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGR 139 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~--i---~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr 139 (425)
.....++|||+|||+++|+++|+++|+.||.|.+|. + +....+++++|||||+|.+.++|++||+.++ ..|.++
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 355678999999999999999999999999998751 1 1112478899999999999999999999877 889999
Q ss_pred eEEEEecccCC
Q 014397 140 VTVTNLAVAGN 150 (425)
Q Consensus 140 ~~~v~~~~~~~ 150 (425)
.|.|.++....
T Consensus 121 ~l~V~~a~~~~ 131 (143)
T 3egn_A 121 PMVVQFARSAR 131 (143)
T ss_dssp ECEEEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999997644
No 335
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.1e-14 Score=113.35 Aligned_cols=78 Identities=22% Similarity=0.351 Sum_probs=69.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTN 144 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~ 144 (425)
.....++|||+|| ++|+++|+++|++||+|++|+|. +++|||||+|.+.++|++||+.++ ..|.++.|.|.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 4456789999996 89999999999999999999984 468899999999999999998887 88999999999
Q ss_pred ecccCCC
Q 014397 145 LAVAGNS 151 (425)
Q Consensus 145 ~~~~~~~ 151 (425)
++.....
T Consensus 83 ~a~~~~~ 89 (97)
T 1x5p_A 83 IARKQPM 89 (97)
T ss_dssp CCSSCCC
T ss_pred ECCCCCC
Confidence 9976543
No 336
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.55 E-value=2.5e-14 Score=122.76 Aligned_cols=80 Identities=13% Similarity=0.171 Sum_probs=69.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCC--ceEEE
Q 014397 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDG--RVTVT 143 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~g--r~~~v 143 (425)
+....+|||+||++.+|+++|+++|++||+|++|+|+.+ ++++||||+|.+.++|++|++.++ ..|.+ +.|.|
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 334566999999999999999999999999999998643 257899999999999999999998 77865 99999
Q ss_pred EecccCC
Q 014397 144 NLAVAGN 150 (425)
Q Consensus 144 ~~~~~~~ 150 (425)
+++..+.
T Consensus 119 ~~Ak~~~ 125 (164)
T 1sjr_A 119 DFSKLTS 125 (164)
T ss_dssp EECSSSS
T ss_pred EEecCCc
Confidence 9997654
No 337
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.55 E-value=1.4e-14 Score=129.37 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=74.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEEecccC
Q 014397 70 QRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLAVAG 149 (425)
Q Consensus 70 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~~~~~~ 149 (425)
.++|||+|||+++|+++|+++|++||+|.+|+|+++. +++++|||||+|++.++|++||+.++..+.|+.|.|.++...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHHH
Confidence 5789999999999999999999999999999999986 699999999999999999999999889999999999988654
No 338
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.55 E-value=6e-15 Score=120.42 Aligned_cols=74 Identities=16% Similarity=0.242 Sum_probs=63.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCce-----E
Q 014397 68 PTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRV-----T 141 (425)
Q Consensus 68 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~-----~ 141 (425)
...++|||+|||+++|+++|+++|++||+|++|.|+.+ |||||+|.+.++|++||+.++ ..|.++. +
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 35688999999999999999999999999999999865 799999999999999999877 8899987 6
Q ss_pred EEEeccc
Q 014397 142 VTNLAVA 148 (425)
Q Consensus 142 ~v~~~~~ 148 (425)
.|.....
T Consensus 87 ~v~~~~~ 93 (115)
T 3beg_B 87 RVKVDGP 93 (115)
T ss_dssp EEEECC-
T ss_pred EeccCCC
Confidence 6665544
No 339
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.54 E-value=3.4e-15 Score=130.79 Aligned_cols=118 Identities=23% Similarity=0.279 Sum_probs=88.7
Q ss_pred CCCCCCCChHHHHHHHHhhchhhHHHHHHHhhhccchhhhhhhhcccCCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCee
Q 014397 19 LESPNRLTPQDARKIVERLTSDQLLDVLSSAVARHDDVLESVRSIADADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELE 98 (425)
Q Consensus 19 ~~~~~~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~ 98 (425)
...+.|.++++|+++++ ++...+.... -.+..............++|||+|||+++|+++|+++|++||.|.
T Consensus 56 ~afV~f~~~~~a~~A~~-l~g~~~~g~~-------l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~ 127 (175)
T 1fje_B 56 FGYVDFESAEDLEKALE-LTGLKVFGNE-------IKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIR 127 (175)
T ss_dssp EEEEEESSHHHHHHHHH-GGGEEETTEE-------EEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEE
T ss_pred EEEEEECCHHHHHHHHh-cCCCEeCCeE-------EEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEE
Confidence 35567778888888884 6655543210 000011111122344678999999999999999999999999876
Q ss_pred EEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEecccC
Q 014397 99 EAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAVAG 149 (425)
Q Consensus 99 ~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~~~ 149 (425)
.+ ..+++++|||||+|.+.++|++||+.++ ..|.++.|.|.++.++
T Consensus 128 ~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 128 LV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp EE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred Ee-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 55 4588999999999999999999999877 8999999999998653
No 340
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.54 E-value=2e-14 Score=110.93 Aligned_cols=72 Identities=22% Similarity=0.440 Sum_probs=64.6
Q ss_pred cccceEEEeecCCcccHHHHHHHHhhc----C-------CceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCcc
Q 014397 161 VSLRKIFVGNVPNDMSADKLLAHFACY----G-------EIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTV 229 (425)
Q Consensus 161 ~~~~~l~V~nL~~~~te~~L~~~F~~~----G-------~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~ 229 (425)
...++|||+|||+++|+++|+++|++| | .|.+|.+..+ +|||||+|.+.++|++|+..++..|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g~~~ 77 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGIIF 77 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHHhcCCCEE
Confidence 356899999999999999999999999 8 8999998765 7999999999999999993346999
Q ss_pred CCeEEEEEE
Q 014397 230 DGKQLNCRL 238 (425)
Q Consensus 230 ~gr~i~v~~ 238 (425)
+|+.|.|+.
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999974
No 341
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.52 E-value=2.6e-14 Score=118.17 Aligned_cols=78 Identities=19% Similarity=0.170 Sum_probs=69.1
Q ss_pred cccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceE-EEEEeCCHHHHHHHHhcC-CCccCC--eEEEE
Q 014397 161 VSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGF-ALFVYKTAEGAQAALVDP-IKTVDG--KQLNC 236 (425)
Q Consensus 161 ~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~-afV~F~~~~~A~~A~~~~-~~~~~g--r~i~v 236 (425)
.....|||+||++.+|+++|+++|++||+|++|+|+.+ .++| |||+|++.++|++|++.+ +..|.+ +.|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 34467899999999999999999999999999988754 2688 999999999999999996 588888 99999
Q ss_pred EEcccCC
Q 014397 237 RLADNKK 243 (425)
Q Consensus 237 ~~a~~~~ 243 (425)
.+++.+.
T Consensus 101 ~~ak~~~ 107 (130)
T 3zzy_A 101 DFSKLTS 107 (130)
T ss_dssp EECSCSS
T ss_pred EecCCCc
Confidence 9998654
No 342
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.52 E-value=2.1e-14 Score=110.84 Aligned_cols=71 Identities=20% Similarity=0.390 Sum_probs=63.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CC
Q 014397 68 PTQRKLFIRGLGWDTTTEGLRSIFSAY----G-------ELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KK 135 (425)
Q Consensus 68 ~~~~~lfV~nLp~~~te~~l~~~F~~~----G-------~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~ 135 (425)
...++|||+|||+++|+++|+++|++| | +|.+|++.++ +|||||+|.+.++|++|| .++ ..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 356889999999999999999999999 8 8999998754 789999999999999999 666 88
Q ss_pred cCCceEEEEe
Q 014397 136 IDGRVTVTNL 145 (425)
Q Consensus 136 ~~gr~~~v~~ 145 (425)
+.++.|.|..
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999988864
No 343
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.52 E-value=3.5e-14 Score=113.68 Aligned_cols=82 Identities=11% Similarity=0.096 Sum_probs=71.3
Q ss_pred cccceEEEeecCC-----cccHHHHHHHHhhcCCceeeeeeccCCC-CCcceEEEEEeCCHHHHHHHHhcC-CCccCCeE
Q 014397 161 VSLRKIFVGNVPN-----DMSADKLLAHFACYGEIEEGPLGFDKQT-GKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQ 233 (425)
Q Consensus 161 ~~~~~l~V~nL~~-----~~te~~L~~~F~~~G~v~~v~i~~d~~~-g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~ 233 (425)
..+++|+|.||.. +.++++|+++|++||.|++|.|++++.+ ++++|||||+|+++++|++|++.+ +..|+||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4568899999963 3478999999999999999999998654 689999999999999999999986 69999999
Q ss_pred EEEEEcccC
Q 014397 234 LNCRLADNK 242 (425)
Q Consensus 234 i~v~~a~~~ 242 (425)
|.|.++...
T Consensus 86 i~v~~a~~~ 94 (105)
T 2pe8_A 86 VKACFYNLD 94 (105)
T ss_dssp CEEEECCHH
T ss_pred EEEEEcCHH
Confidence 999999653
No 344
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.52 E-value=4.6e-14 Score=116.10 Aligned_cols=76 Identities=14% Similarity=0.094 Sum_probs=66.5
Q ss_pred ccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceE-EEEEeCCHHHHHHHHhcC-CCccCC--eEEEEE
Q 014397 162 SLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGF-ALFVYKTAEGAQAALVDP-IKTVDG--KQLNCR 237 (425)
Q Consensus 162 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~-afV~F~~~~~A~~A~~~~-~~~~~g--r~i~v~ 237 (425)
....|||+||++.+|+++|+++|++||.|++|+|+.. .|| |||+|++.++|++|++.| +..|.+ +.|.|.
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 3456789999999999999999999999999999642 386 999999999999999986 588887 699999
Q ss_pred EcccCC
Q 014397 238 LADNKK 243 (425)
Q Consensus 238 ~a~~~~ 243 (425)
+++.+.
T Consensus 98 ~Ak~~~ 103 (124)
T 2e5i_A 98 YARPTR 103 (124)
T ss_dssp CCSCSC
T ss_pred EecCCc
Confidence 997664
No 345
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=6.6e-14 Score=107.61 Aligned_cols=74 Identities=18% Similarity=0.226 Sum_probs=64.5
Q ss_pred CCCeEEEcCCCCCCCHHH----HHHHHhhc-CCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEE
Q 014397 69 TQRKLFIRGLGWDTTTEG----LRSIFSAY-GELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTV 142 (425)
Q Consensus 69 ~~~~lfV~nLp~~~te~~----l~~~F~~~-G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~ 142 (425)
..+.|||+|||+++++++ |+++|++| |+|.+| ++ |+|||+|.+.++|++|++.++ ..+.+|.+.
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 344499999999999988 55899999 599887 23 899999999999999999888 999999999
Q ss_pred EEecccCCCC
Q 014397 143 TNLAVAGNSG 152 (425)
Q Consensus 143 v~~~~~~~~~ 152 (425)
|.++......
T Consensus 78 v~~A~~~sd~ 87 (96)
T 2diu_A 78 VSFTPKNREL 87 (96)
T ss_dssp EESSCCSCCC
T ss_pred EEecCCCcce
Confidence 9999876543
No 346
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=4.2e-14 Score=108.71 Aligned_cols=71 Identities=17% Similarity=0.218 Sum_probs=62.5
Q ss_pred ceEEEeecCCcccHHH----HHHHHhhc-CCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEE
Q 014397 164 RKIFVGNVPNDMSADK----LLAHFACY-GEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCR 237 (425)
Q Consensus 164 ~~l~V~nL~~~~te~~----L~~~F~~~-G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~ 237 (425)
+.|||.|||+.+++++ |+++|++| |+|.+| ++ |||||+|.+.++|++|++.| +..|.||+|+|.
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 3499999999999988 55899999 599998 22 99999999999999999986 699999999999
Q ss_pred EcccCCC
Q 014397 238 LADNKKA 244 (425)
Q Consensus 238 ~a~~~~~ 244 (425)
+|+.+..
T Consensus 80 ~A~~~sd 86 (96)
T 2diu_A 80 FTPKNRE 86 (96)
T ss_dssp SSCCSCC
T ss_pred ecCCCcc
Confidence 9977644
No 347
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.49 E-value=4.2e-14 Score=116.42 Aligned_cols=78 Identities=22% Similarity=0.326 Sum_probs=68.6
Q ss_pred CcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEE
Q 014397 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRL 238 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~ 238 (425)
....++|||+|| ++|+++|+++|++||.|++|.|. +++|||||+|++.++|++||+.+ +..|+++.|.|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345689999996 79999999999999999999986 45899999999999999999885 6899999999999
Q ss_pred cccCCCC
Q 014397 239 ADNKKAK 245 (425)
Q Consensus 239 a~~~~~~ 245 (425)
++.+...
T Consensus 108 a~~~~~~ 114 (121)
T 2bz2_A 108 ARKQPML 114 (121)
T ss_dssp CCSSCC-
T ss_pred eCCCCCC
Confidence 9876543
No 348
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.49 E-value=9.6e-14 Score=114.73 Aligned_cols=77 Identities=13% Similarity=0.213 Sum_probs=68.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccE-EEEEecchHHHHHHHhcCC-CCcCC--ceEEEE
Q 014397 69 TQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGY-GFITFKHIDGAMLALKEPS-KKIDG--RVTVTN 144 (425)
Q Consensus 69 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~-aFV~F~~~e~A~~Al~~~~-~~~~g--r~~~v~ 144 (425)
.-..|||+||++.+|+++|+++|++||+|.+|+++.+ +++| |||+|.+.++|++|++.++ ..|.+ +.|.|+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 4456889999999999999999999999999988764 3677 9999999999999999999 88888 889999
Q ss_pred ecccCC
Q 014397 145 LAVAGN 150 (425)
Q Consensus 145 ~~~~~~ 150 (425)
++....
T Consensus 102 ~ak~~~ 107 (130)
T 3zzy_A 102 FSKLTS 107 (130)
T ss_dssp ECSCSS
T ss_pred ecCCCc
Confidence 987654
No 349
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.48 E-value=6e-14 Score=126.44 Aligned_cols=77 Identities=17% Similarity=0.260 Sum_probs=70.3
Q ss_pred ccceEEEeecC-CcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEc
Q 014397 162 SLRKIFVGNVP-NDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLA 239 (425)
Q Consensus 162 ~~~~l~V~nL~-~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a 239 (425)
+.++|||+||+ +.+|+++|+++|++||.|.+|+|+.++ +|||||+|+++++|++||+.+ +..|.|++|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 45789999999 899999999999999999999998763 799999999999999999986 69999999999998
Q ss_pred ccCC
Q 014397 240 DNKK 243 (425)
Q Consensus 240 ~~~~ 243 (425)
+.+.
T Consensus 78 ~~~~ 81 (205)
T 3tyt_A 78 KQPA 81 (205)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7554
No 350
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.48 E-value=5e-14 Score=131.87 Aligned_cols=82 Identities=26% Similarity=0.335 Sum_probs=73.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcC----CceEE
Q 014397 68 PTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKID----GRVTV 142 (425)
Q Consensus 68 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~----gr~~~ 142 (425)
...++|||+|||+++|+++|+++|+.||.|++|+|+.+ .+++++|||||+|.+.++|.+||+.++ ..+. ++.+.
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~ 172 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVI 172 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEE
Confidence 35678999999999999999999999999999999999 589999999999999999999999984 4433 89999
Q ss_pred EEecccCC
Q 014397 143 TNLAVAGN 150 (425)
Q Consensus 143 v~~~~~~~ 150 (425)
|.++....
T Consensus 173 v~~~~~~~ 180 (261)
T 3sde_A 173 VEPMEQFD 180 (261)
T ss_dssp EEECCCEE
T ss_pred EeeccccC
Confidence 99887543
No 351
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.48 E-value=1.1e-13 Score=110.84 Aligned_cols=81 Identities=14% Similarity=0.222 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCC-----CCCHHHHHHHHhhcCCeeEEEEeecCCC-CCcccEEEEEecchHHHHHHHhcCC-CCcCCce
Q 014397 68 PTQRKLFIRGLGW-----DTTTEGLRSIFSAYGELEEAVVILDKAT-GKSKGYGFITFKHIDGAMLALKEPS-KKIDGRV 140 (425)
Q Consensus 68 ~~~~~lfV~nLp~-----~~te~~l~~~F~~~G~i~~v~i~~~~~~-g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~ 140 (425)
..+++|+|.||.. +.++++|+++|++||+|++|+|++++.+ ++++|||||+|.+.++|++|++.++ ..+.+|.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4578899999962 2378999999999999999999998654 6899999999999999999999988 8899999
Q ss_pred EEEEeccc
Q 014397 141 TVTNLAVA 148 (425)
Q Consensus 141 ~~v~~~~~ 148 (425)
|.+.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999854
No 352
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.48 E-value=8.5e-14 Score=114.57 Aligned_cols=77 Identities=22% Similarity=0.362 Sum_probs=68.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEE
Q 014397 66 ADPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTN 144 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~ 144 (425)
.....++|||+|| ++|+++|+++|++||+|.+|++. +++|||||+|.+.++|++||+.++ ..|.++.|.|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456789999996 69999999999999999999986 468899999999999999998877 88999999999
Q ss_pred ecccCC
Q 014397 145 LAVAGN 150 (425)
Q Consensus 145 ~~~~~~ 150 (425)
++....
T Consensus 107 ~a~~~~ 112 (121)
T 2bz2_A 107 IARKQP 112 (121)
T ss_dssp ECCSSC
T ss_pred EeCCCC
Confidence 987654
No 353
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.47 E-value=2.7e-13 Score=111.51 Aligned_cols=73 Identities=16% Similarity=0.183 Sum_probs=64.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccE-EEEEecchHHHHHHHhcCC-CCcCC--ceEEEEecc
Q 014397 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGY-GFITFKHIDGAMLALKEPS-KKIDG--RVTVTNLAV 147 (425)
Q Consensus 72 ~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~-aFV~F~~~e~A~~Al~~~~-~~~~g--r~~~v~~~~ 147 (425)
.|||+||++.+|+++|+++|++||+|++|+|+. + .|| |||+|.+.++|++|++.++ ..|.+ +.|.|.++.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 367999999999999999999999999999864 2 276 9999999999999999988 78877 589999887
Q ss_pred cCC
Q 014397 148 AGN 150 (425)
Q Consensus 148 ~~~ 150 (425)
...
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 654
No 354
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.47 E-value=1.2e-13 Score=126.22 Aligned_cols=78 Identities=17% Similarity=0.245 Sum_probs=68.9
Q ss_pred CcccceEEEeecCCcc---------cHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCcc
Q 014397 160 DVSLRKIFVGNVPNDM---------SADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTV 229 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~~---------te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~ 229 (425)
....++|||+||+..+ ++++|+++|++||+|++|+|+.+ ||||||+|.+.++|++|++.| +..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4567899999999998 89999999999999999999864 899999999999999999986 5777
Q ss_pred ------------CCeEEEEEEcccCC
Q 014397 230 ------------DGKQLNCRLADNKK 243 (425)
Q Consensus 230 ------------~gr~i~v~~a~~~~ 243 (425)
+++.|.|+||+...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 89999999997653
No 355
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.47 E-value=8.5e-14 Score=131.61 Aligned_cols=76 Identities=20% Similarity=0.268 Sum_probs=69.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcC-CceEEEE
Q 014397 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKID-GRVTVTN 144 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~-gr~~~v~ 144 (425)
....++|||+|||.++|+++|+++|++||.|++|+|+.++ +|||||+|.+.++|++||+.++ ..|. ++.|.|.
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 3356889999999999999999999999999999998664 5899999999999999999888 7788 9999999
Q ss_pred ecc
Q 014397 145 LAV 147 (425)
Q Consensus 145 ~~~ 147 (425)
|+.
T Consensus 279 ~ak 281 (282)
T 3pgw_A 279 FAK 281 (282)
T ss_pred Eec
Confidence 874
No 356
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=6.1e-13 Score=107.87 Aligned_cols=82 Identities=21% Similarity=0.308 Sum_probs=68.7
Q ss_pred CCcccceEEEeecCCcc-----------cHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-C
Q 014397 159 VDVSLRKIFVGNVPNDM-----------SADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-I 226 (425)
Q Consensus 159 ~~~~~~~l~V~nL~~~~-----------te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~ 226 (425)
....+++|+|.||.... ++++|+++|++||.|++|.| .++ .++|||||+|.+.++|++||+.+ +
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 44567899999994433 26899999999999999966 443 37999999999999999999886 5
Q ss_pred CccCCeEEEEEEcccCCC
Q 014397 227 KTVDGKQLNCRLADNKKA 244 (425)
Q Consensus 227 ~~~~gr~i~v~~a~~~~~ 244 (425)
..|++++|.|.++..+..
T Consensus 87 ~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp CEETTEECEEEECCSCCC
T ss_pred CEECCcEEEEEEeCCCCC
Confidence 899999999999977544
No 357
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.45 E-value=1.3e-13 Score=126.17 Aligned_cols=80 Identities=21% Similarity=0.354 Sum_probs=69.3
Q ss_pred cCCCCCCeEEEcCCCCCC---------CHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-C
Q 014397 65 DADPTQRKLFIRGLGWDT---------TTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-K 134 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~---------te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~ 134 (425)
..+...++|||+||+.++ ||++|+++|++||+|++|+|+. ++|||||+|.+.++|++|++.++ .
T Consensus 129 s~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~ 202 (240)
T 3u1l_A 129 SFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQ 202 (240)
T ss_dssp --CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTC
T ss_pred ccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCC
Confidence 345678999999999998 7999999999999999999985 47899999999999999999888 7
Q ss_pred Cc------------CCceEEEEecccCC
Q 014397 135 KI------------DGRVTVTNLAVAGN 150 (425)
Q Consensus 135 ~~------------~gr~~~v~~~~~~~ 150 (425)
.| .++.|.|.|+....
T Consensus 203 ~l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 203 TLLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred EEeccccccccccCCCCEEEEEEccCCC
Confidence 77 79999999997644
No 358
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.43 E-value=1.3e-13 Score=126.50 Aligned_cols=125 Identities=12% Similarity=0.173 Sum_probs=91.0
Q ss_pred CCCCCCCChHHHHHHHHhhchhhHHHHHHHh-hhccc-----h-hh-------------------hhhhhcccCCCCCCe
Q 014397 19 LESPNRLTPQDARKIVERLTSDQLLDVLSSA-VARHD-----D-VL-------------------ESVRSIADADPTQRK 72 (425)
Q Consensus 19 ~~~~~~~~~e~~~~~~e~~~~~~~~~~~~~~-~~~~~-----~-~~-------------------~~~~~~~~~~~~~~~ 72 (425)
...++|.+.++|+++++.++...+....... ..... . .. .............++
T Consensus 74 ~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (229)
T 2adc_A 74 NALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSAT 153 (229)
T ss_dssp CEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSE
T ss_pred EEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCE
Confidence 4667888999999999988765553211000 00000 0 00 000001112344789
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcC-CceEEEEeccc
Q 014397 73 LFIRGLGWDTTTEGLRSIFSAYG-ELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKID-GRVTVTNLAVA 148 (425)
Q Consensus 73 lfV~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~-gr~~~v~~~~~ 148 (425)
|||+|||+++|+++|+++|++|| +|.+|+++.+ ++|||||+|.+.++|++||+.++ ..+. ++.|.|.++..
T Consensus 154 l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 154 LHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp EEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred EEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 99999999999999999999999 9999999763 37899999999999999999877 8888 99999999864
No 359
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.2e-12 Score=103.49 Aligned_cols=68 Identities=22% Similarity=0.274 Sum_probs=59.4
Q ss_pred CcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEEEcccCCCCC
Q 014397 173 NDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCRLADNKKAKP 246 (425)
Q Consensus 173 ~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~~a~~~~~~~ 246 (425)
..+|+++|+++|++||+|++|.|+ ++++|||||+|++.++|++||+.+ ..+.+++|.|++++.+....
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~-~~~~g~~l~V~~a~~~~~~~ 94 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNE-VGLVDNPLKISWLEGQPQDA 94 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTC-CBCSSSBCEEECSSCCCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhc-CCCCCCeEEEEEccCCCCCC
Confidence 568999999999999999999997 367999999999999999999984 45789999999997765443
No 360
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.41 E-value=1e-13 Score=124.03 Aligned_cols=125 Identities=14% Similarity=0.206 Sum_probs=91.6
Q ss_pred CCCCCCCChHHHHHHHHhhchhhHHHHHHHhh-hccchh-hhh------------------------hhhcccCCCCCCe
Q 014397 19 LESPNRLTPQDARKIVERLTSDQLLDVLSSAV-ARHDDV-LES------------------------VRSIADADPTQRK 72 (425)
Q Consensus 19 ~~~~~~~~~e~~~~~~e~~~~~~~~~~~~~~~-~~~~~~-~~~------------------------~~~~~~~~~~~~~ 72 (425)
...+.|.+.++|+++++.++...+........ ...... ... .........+.++
T Consensus 43 ~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 122 (198)
T 1qm9_A 43 NALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSAT 122 (198)
T ss_dssp CCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCE
T ss_pred EEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccE
Confidence 46788899999999999887765543111000 000000 000 0000111234788
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcC-CceEEEEeccc
Q 014397 73 LFIRGLGWDTTTEGLRSIFSAYG-ELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKID-GRVTVTNLAVA 148 (425)
Q Consensus 73 lfV~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~-gr~~~v~~~~~ 148 (425)
|||+|||.++|+++|+++|++|| .|.+|+++.+ .+|||||+|.+.++|++||+.++ ..+. ++.|.|.++..
T Consensus 123 l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 123 LHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp EEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred EEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 99999999999999999999999 9999999764 27899999999999999999887 7888 99999999864
No 361
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.40 E-value=5e-13 Score=106.97 Aligned_cols=81 Identities=10% Similarity=0.128 Sum_probs=68.7
Q ss_pred ccceEEEeec--CCcc--------cHHHHHHHHhhcCCceeeeeeccCCC--CCcceEEEEEeCCHHHHHHHHhcC-CCc
Q 014397 162 SLRKIFVGNV--PNDM--------SADKLLAHFACYGEIEEGPLGFDKQT--GKPKGFALFVYKTAEGAQAALVDP-IKT 228 (425)
Q Consensus 162 ~~~~l~V~nL--~~~~--------te~~L~~~F~~~G~v~~v~i~~d~~~--g~~kG~afV~F~~~~~A~~A~~~~-~~~ 228 (425)
+++.|.|.|+ +.++ .+++|+++|++||.|++|.|++++.+ .+++|++||+|+++++|++|++.+ ++.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4577888887 3333 35789999999999999999998765 468999999999999999999996 599
Q ss_pred cCCeEEEEEEcccC
Q 014397 229 VDGKQLNCRLADNK 242 (425)
Q Consensus 229 ~~gr~i~v~~a~~~ 242 (425)
|+||+|.|.++...
T Consensus 84 f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FANRVVVTKYCDPD 97 (105)
T ss_dssp ETTEECEEEEECHH
T ss_pred eCCCEEEEEEeCHH
Confidence 99999999998543
No 362
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1.3e-12 Score=105.87 Aligned_cols=82 Identities=16% Similarity=0.282 Sum_probs=69.4
Q ss_pred cCCCCCCeEEEcCCCCCCC-----------HHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC
Q 014397 65 DADPTQRKLFIRGLGWDTT-----------TEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS 133 (425)
Q Consensus 65 ~~~~~~~~lfV~nLp~~~t-----------e~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~ 133 (425)
..+..+++|+|.||....+ +++|+++|++||+|++|.| .++ .++|||||+|.+.++|++||+.++
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 4566789999999944332 6899999999999999955 554 389999999999999999999888
Q ss_pred -CCcCCceEEEEecccCC
Q 014397 134 -KKIDGRVTVTNLAVAGN 150 (425)
Q Consensus 134 -~~~~gr~~~v~~~~~~~ 150 (425)
..|.++.|.|.++....
T Consensus 86 g~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp TCEETTEECEEEECCSCC
T ss_pred CCEECCcEEEEEEeCCCC
Confidence 88999999999987644
No 363
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.38 E-value=2.5e-13 Score=108.61 Aligned_cols=71 Identities=20% Similarity=0.338 Sum_probs=63.0
Q ss_pred EeecCCcccHHHHHHHH------------hhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEE
Q 014397 168 VGNVPNDMSADKLLAHF------------ACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQL 234 (425)
Q Consensus 168 V~nL~~~~te~~L~~~F------------~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i 234 (425)
+.+|++.+++++|+++| ++||.|++|.|++++ +++++|||||+|+++++|++|++.+ +..|+||+|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56888888888877666 999999999999885 4789999999999999999999986 699999999
Q ss_pred EEEEc
Q 014397 235 NCRLA 239 (425)
Q Consensus 235 ~v~~a 239 (425)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99886
No 364
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.35 E-value=1.1e-12 Score=107.04 Aligned_cols=80 Identities=11% Similarity=0.121 Sum_probs=68.9
Q ss_pred ccceEEEeecCC--c---ccHHHHHHHHhhcCCceeeeeeccCC----CCCcceEEEEEeCCHHHHHHHHhcC-CCccCC
Q 014397 162 SLRKIFVGNVPN--D---MSADKLLAHFACYGEIEEGPLGFDKQ----TGKPKGFALFVYKTAEGAQAALVDP-IKTVDG 231 (425)
Q Consensus 162 ~~~~l~V~nL~~--~---~te~~L~~~F~~~G~v~~v~i~~d~~----~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~g 231 (425)
++++|+|.|+-. + -.++||+++|++||+|++|.|++++. +++++|++||+|++.++|++|++.+ +..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 457888988832 2 24789999999999999999999865 4678999999999999999999996 599999
Q ss_pred eEEEEEEccc
Q 014397 232 KQLNCRLADN 241 (425)
Q Consensus 232 r~i~v~~a~~ 241 (425)
|+|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999854
No 365
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1.1e-11 Score=97.88 Aligned_cols=77 Identities=17% Similarity=0.181 Sum_probs=64.3
Q ss_pred CCCCeEEEcCCC-------CCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCce
Q 014397 68 PTQRKLFIRGLG-------WDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRV 140 (425)
Q Consensus 68 ~~~~~lfV~nLp-------~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~ 140 (425)
...++|.|.-.. .++|+++|+++|++||+|++|+|+ ++++|||||+|.+.++|++||+.++ .+.++.
T Consensus 8 ~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~-~~~g~~ 81 (100)
T 2d9o_A 8 QGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV-GLVDNP 81 (100)
T ss_dssp CSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC-BCSSSB
T ss_pred CccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC-CCCCCe
Confidence 345567776554 458999999999999999999987 3689999999999999999999854 467899
Q ss_pred EEEEecccCC
Q 014397 141 TVTNLAVAGN 150 (425)
Q Consensus 141 ~~v~~~~~~~ 150 (425)
|.|.|+....
T Consensus 82 l~V~~a~~~~ 91 (100)
T 2d9o_A 82 LKISWLEGQP 91 (100)
T ss_dssp CEEECSSCCC
T ss_pred EEEEEccCCC
Confidence 9999986654
No 366
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.34 E-value=1.6e-12 Score=103.98 Aligned_cols=81 Identities=19% Similarity=0.193 Sum_probs=69.7
Q ss_pred CCCCeEEEcCC--CCCCC--------HHHHHHHHhhcCCeeEEEEeecCCC--CCcccEEEEEecchHHHHHHHhcCC-C
Q 014397 68 PTQRKLFIRGL--GWDTT--------TEGLRSIFSAYGELEEAVVILDKAT--GKSKGYGFITFKHIDGAMLALKEPS-K 134 (425)
Q Consensus 68 ~~~~~lfV~nL--p~~~t--------e~~l~~~F~~~G~i~~v~i~~~~~~--g~skG~aFV~F~~~e~A~~Al~~~~-~ 134 (425)
.+++.|.|.|+ |.++. +++|+++|++||+|++|+|++++.+ .+++|+|||+|++.++|++|++.++ .
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35788999998 44443 4689999999999999999988754 4689999999999999999999998 8
Q ss_pred CcCCceEEEEeccc
Q 014397 135 KIDGRVTVTNLAVA 148 (425)
Q Consensus 135 ~~~gr~~~v~~~~~ 148 (425)
.+.+|.|.+.+...
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 89999999998754
No 367
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.30 E-value=7.4e-13 Score=105.83 Aligned_cols=71 Identities=20% Similarity=0.303 Sum_probs=61.8
Q ss_pred EcCCCCCCCHHHHHHHH------------hhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceE
Q 014397 75 IRGLGWDTTTEGLRSIF------------SAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVT 141 (425)
Q Consensus 75 V~nLp~~~te~~l~~~F------------~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~ 141 (425)
+.+|++.+|+++|+++| ++||+|++|+|++++ +++++|||||+|.++++|++|++.++ ..+.+|.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 55677777787777666 999999999999886 57899999999999999999999888 88999999
Q ss_pred EEEec
Q 014397 142 VTNLA 146 (425)
Q Consensus 142 ~v~~~ 146 (425)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99875
No 368
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.30 E-value=3.9e-12 Score=103.84 Aligned_cols=80 Identities=13% Similarity=0.188 Sum_probs=69.6
Q ss_pred CCCeEEEcCCC--CC---CCHHHHHHHHhhcCCeeEEEEeecCC----CCCcccEEEEEecchHHHHHHHhcCC-CCcCC
Q 014397 69 TQRKLFIRGLG--WD---TTTEGLRSIFSAYGELEEAVVILDKA----TGKSKGYGFITFKHIDGAMLALKEPS-KKIDG 138 (425)
Q Consensus 69 ~~~~lfV~nLp--~~---~te~~l~~~F~~~G~i~~v~i~~~~~----~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~g 138 (425)
++++|+|.||- .+ -.+++|+++|++||+|++|+|++++. +++++|++||+|.+.++|++|++.++ ..|.+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 56889999983 22 24789999999999999999999864 46789999999999999999999999 89999
Q ss_pred ceEEEEeccc
Q 014397 139 RVTVTNLAVA 148 (425)
Q Consensus 139 r~~~v~~~~~ 148 (425)
|.|.+.+...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998754
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.25 E-value=1.2e-11 Score=119.10 Aligned_cols=78 Identities=17% Similarity=0.289 Sum_probs=63.6
Q ss_pred cccCCCCCCeEEEcC--CCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCc---
Q 014397 63 IADADPTQRKLFIRG--LGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKI--- 136 (425)
Q Consensus 63 ~~~~~~~~~~lfV~n--Lp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~--- 136 (425)
......++++|||+| |++.+||++|+++|++||+|++|++.. +||||||+|++.++|++||+.++ ..+
T Consensus 11 v~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~ 84 (345)
T 3tht_A 11 IETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDD 84 (345)
T ss_dssp CCCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECT
T ss_pred ceecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccc
Confidence 334466788999999 589999999999999999999987643 57899999999999999999998 544
Q ss_pred CCc--eEEEEec
Q 014397 137 DGR--VTVTNLA 146 (425)
Q Consensus 137 ~gr--~~~v~~~ 146 (425)
.|+ .+.+.++
T Consensus 85 ~g~~~~ly~~~~ 96 (345)
T 3tht_A 85 LGQKITLYLNFV 96 (345)
T ss_dssp TSCEEECEEEEC
T ss_pred cCCceEEEEEEe
Confidence 345 4555554
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.21 E-value=3.3e-11 Score=115.96 Aligned_cols=76 Identities=24% Similarity=0.315 Sum_probs=63.8
Q ss_pred CCcccceEEEee--cCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCC-Ccc---CCe
Q 014397 159 VDVSLRKIFVGN--VPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPI-KTV---DGK 232 (425)
Q Consensus 159 ~~~~~~~l~V~n--L~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~-~~~---~gr 232 (425)
....+++|||+| |++.+||++|+++|++||+|++|.+.. +||||||+|++.++|++||+.++ .++ .|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 355678999999 689999999999999999999988754 37999999999999999999974 555 244
Q ss_pred --EEEEEEcc
Q 014397 233 --QLNCRLAD 240 (425)
Q Consensus 233 --~i~v~~a~ 240 (425)
.|.|.+++
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 67777774
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.16 E-value=6.9e-11 Score=95.72 Aligned_cols=76 Identities=13% Similarity=0.061 Sum_probs=63.2
Q ss_pred ccceEEEeecCC----------cccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccC
Q 014397 162 SLRKIFVGNVPN----------DMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVD 230 (425)
Q Consensus 162 ~~~~l~V~nL~~----------~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~ 230 (425)
.++.|.|.|+=. .-.++||+++|++||.|++|.|.++. ++||+||+|++.++|++|++.| +..|+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 456777777722 12357899999999999999997663 4899999999999999999996 59999
Q ss_pred CeEEEEEEccc
Q 014397 231 GKQLNCRLADN 241 (425)
Q Consensus 231 gr~i~v~~a~~ 241 (425)
||.|.|.++..
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999854
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.07 E-value=3e-10 Score=91.94 Aligned_cols=78 Identities=9% Similarity=0.095 Sum_probs=64.3
Q ss_pred CCCCCeEEEcCCCC--CC--------CHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CC
Q 014397 67 DPTQRKLFIRGLGW--DT--------TTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KK 135 (425)
Q Consensus 67 ~~~~~~lfV~nLp~--~~--------te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~ 135 (425)
+.+++.|.|.|+=. +. .+++|+++|++||.|++|.|.++. ++|++||+|.+.++|++|++.++ ..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 34677888988832 21 245789999999999999987653 58999999999999999999988 88
Q ss_pred cCCceEEEEeccc
Q 014397 136 IDGRVTVTNLAVA 148 (425)
Q Consensus 136 ~~gr~~~v~~~~~ 148 (425)
|.||.|.+.++..
T Consensus 80 f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 80 FAGKMITAAYVPL 92 (114)
T ss_dssp ETTEECEEEEECH
T ss_pred ECCEEEEEEEEcH
Confidence 9999999998743
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=4.4e-10 Score=91.23 Aligned_cols=75 Identities=15% Similarity=0.108 Sum_probs=66.5
Q ss_pred CcccceEEEeecCCc-ccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCC-HHHHHHHHhcC---CCccCCeEE
Q 014397 160 DVSLRKIFVGNVPND-MSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKT-AEGAQAALVDP---IKTVDGKQL 234 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~-~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~-~~~A~~A~~~~---~~~~~gr~i 234 (425)
-.....|+|+||+++ +++++|+++|++||+|..|.|..+.. +|||+|.+ +++|++|+.++ +..|++..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 345678999999999 99999999999999999999998854 59999999 89999999886 478999999
Q ss_pred EEEEcc
Q 014397 235 NCRLAD 240 (425)
Q Consensus 235 ~v~~a~ 240 (425)
.++..+
T Consensus 89 ~~evL~ 94 (121)
T 1owx_A 89 TWEVLE 94 (121)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 988775
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.99 E-value=2.1e-09 Score=81.83 Aligned_cols=75 Identities=19% Similarity=0.183 Sum_probs=62.2
Q ss_pred cceEEEeecCC----cccH----HHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEE
Q 014397 163 LRKIFVGNVPN----DMSA----DKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQL 234 (425)
Q Consensus 163 ~~~l~V~nL~~----~~te----~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i 234 (425)
..+|+|.-++. +.-+ .+|.+.|++||+|..|+|+.|+ +||+|.+.++|.+||+.+...+.||.|
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr~L 78 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNRTI 78 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTEEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCeEE
Confidence 35677776652 2223 6689999999999999999873 899999999999999955799999999
Q ss_pred EEEEcccCCCC
Q 014397 235 NCRLADNKKAK 245 (425)
Q Consensus 235 ~v~~a~~~~~~ 245 (425)
+|+++++.+.+
T Consensus 79 kV~lkt~dW~~ 89 (91)
T 2dnr_A 79 TIALKSPSGPS 89 (91)
T ss_dssp EEEECCCSSCS
T ss_pred EEEeCCCCccc
Confidence 99999988764
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.98 E-value=1.2e-09 Score=88.71 Aligned_cols=75 Identities=21% Similarity=0.198 Sum_probs=63.1
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecc-hHHHHHHHhcCC---CCcCCce
Q 014397 66 ADPTQRKLFIRGLGWD-TTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKH-IDGAMLALKEPS---KKIDGRV 140 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~-~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~-~e~A~~Al~~~~---~~~~gr~ 140 (425)
.-+..+.|||+||+++ +++++|+++|++||+|..|.++.+.. .|||+|.+ +++|++|++.++ ..|++..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 3456788999999999 99999999999999999999998865 59999999 899999999874 5566665
Q ss_pred EEEEec
Q 014397 141 TVTNLA 146 (425)
Q Consensus 141 ~~v~~~ 146 (425)
+.+++.
T Consensus 88 ~~~evL 93 (121)
T 1owx_A 88 VTWEVL 93 (121)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 555443
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.80 E-value=1.1e-08 Score=77.92 Aligned_cols=73 Identities=18% Similarity=0.199 Sum_probs=60.1
Q ss_pred CCCeEEEcCCC----CCCCH----HHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCce
Q 014397 69 TQRKLFIRGLG----WDTTT----EGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRV 140 (425)
Q Consensus 69 ~~~~lfV~nLp----~~~te----~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~ 140 (425)
+.-||+|.-++ .++-. .+|.+.|++||+|..++++.++ +||+|.+.++|.+||+.....+++|.
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr~ 77 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNRT 77 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCeE
Confidence 44567777766 23333 5688999999999999999874 89999999999999994449999999
Q ss_pred EEEEecccC
Q 014397 141 TVTNLAVAG 149 (425)
Q Consensus 141 ~~v~~~~~~ 149 (425)
|.|+++.+.
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999998764
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=1.6e-08 Score=77.30 Aligned_cols=72 Identities=14% Similarity=0.131 Sum_probs=59.7
Q ss_pred ccceEEEeecCCc-----ccH----HHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCe
Q 014397 162 SLRKIFVGNVPND-----MSA----DKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGK 232 (425)
Q Consensus 162 ~~~~l~V~nL~~~-----~te----~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr 232 (425)
+..+|+|.-++.. +.+ .+|.+.|++||+|..|+|..|+ +||+|.+.++|.+||+.+...++||
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~Gr 85 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVKGR 85 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEETTE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeCCe
Confidence 4468888888632 222 5689999999999999999883 9999999999999999556999999
Q ss_pred EEEEEEccc
Q 014397 233 QLNCRLADN 241 (425)
Q Consensus 233 ~i~v~~a~~ 241 (425)
.|+|++..+
T Consensus 86 ~L~V~~k~~ 94 (95)
T 1ufw_A 86 AVKISGPSS 94 (95)
T ss_dssp EEEEECCCC
T ss_pred EEEEeccCC
Confidence 999987653
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.67 E-value=2.4e-08 Score=90.72 Aligned_cols=67 Identities=9% Similarity=0.089 Sum_probs=59.7
Q ss_pred ccHHHHHHHHhhcCCceeeeeeccC----CCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEEEEccc
Q 014397 175 MSADKLLAHFACYGEIEEGPLGFDK----QTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNCRLADN 241 (425)
Q Consensus 175 ~te~~L~~~F~~~G~v~~v~i~~d~----~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v~~a~~ 241 (425)
-.+++|++.|++||.|++|.|+++. ++++++|++||+|.+.++|++|++.+ +..|+||+|.|.+...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 4678999999999999999998554 45689999999999999999999996 6999999999999854
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.64 E-value=2.5e-08 Score=76.26 Aligned_cols=75 Identities=15% Similarity=0.186 Sum_probs=61.1
Q ss_pred CCCCCCeEEEcCCCCC-----CCH----HHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCc
Q 014397 66 ADPTQRKLFIRGLGWD-----TTT----EGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKI 136 (425)
Q Consensus 66 ~~~~~~~lfV~nLp~~-----~te----~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~ 136 (425)
--++.-||+|.-++.+ +-. .+|.+.|++||+|..++++.++ +||+|.+.++|.+||+.....+
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v 82 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKV 82 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeee
Confidence 3455678999988643 222 4588999999999999999884 9999999999999999333999
Q ss_pred CCceEEEEeccc
Q 014397 137 DGRVTVTNLAVA 148 (425)
Q Consensus 137 ~gr~~~v~~~~~ 148 (425)
.+|.|.|++...
T Consensus 83 ~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 83 KGRAVKISGPSS 94 (95)
T ss_dssp TTEEEEEECCCC
T ss_pred CCeEEEEeccCC
Confidence 999999997653
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.61 E-value=1.1e-07 Score=86.32 Aligned_cols=67 Identities=12% Similarity=0.176 Sum_probs=59.6
Q ss_pred CCHHHHHHHHhhcCCeeEEEEeecCC----CCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEEEeccc
Q 014397 82 TTTEGLRSIFSAYGELEEAVVILDKA----TGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVTNLAVA 148 (425)
Q Consensus 82 ~te~~l~~~F~~~G~i~~v~i~~~~~----~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v~~~~~ 148 (425)
-.+++|++.|++||+|.+|+|+++.. +++++|++||+|.+.++|++|++.++ ..+.||.|.+.+...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 46788999999999999999986643 45899999999999999999999999 899999999998753
No 381
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=3.8e-06 Score=64.95 Aligned_cols=89 Identities=18% Similarity=0.174 Sum_probs=73.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhc-----CCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEE
Q 014397 68 PTQRKLFIRGLGWDTTTEGLRSIFSAY-----GELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTV 142 (425)
Q Consensus 68 ~~~~~lfV~nLp~~~te~~l~~~F~~~-----G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~ 142 (425)
...++|.|.|||.+++++.|+-+|+.- |+|+++.... .-|+|+|.+.+.|++.|+...+.|.+..+.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~Ls 77 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLS 77 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEE
Confidence 356789999999999999999999872 5888888754 269999999999999999988899998888
Q ss_pred EEecccCCCCCCCCCCCCcccceEEEeecCCccc
Q 014397 143 TNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMS 176 (425)
Q Consensus 143 v~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t 176 (425)
|...... ...+|++.+|+..|+
T Consensus 78 V~P~~~~------------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 78 LRPAPPR------------APARLLLQGLPPGTS 99 (104)
T ss_dssp EEECCCC------------CCCCCCCCSCCCCCC
T ss_pred EEcCCCC------------CcceEeeecCCCCCC
Confidence 8765432 236799999988875
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.28 E-value=2.7e-06 Score=66.28 Aligned_cols=72 Identities=14% Similarity=0.053 Sum_probs=63.8
Q ss_pred ccceEEEeecCCcccHHHHHHHHhhc-----CCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEE
Q 014397 162 SLRKIFVGNVPNDMSADKLLAHFACY-----GEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLN 235 (425)
Q Consensus 162 ~~~~l~V~nL~~~~te~~L~~~F~~~-----G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~ 235 (425)
..++|-|-|||..++++.|+.+.+++ +.|+.|.+..|. +=|+|+|.|..+|-+|...+ +.+|++|+|.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 34789999999999999999999999 999999998884 46999999999988888664 6999999999
Q ss_pred EEEc
Q 014397 236 CRLA 239 (425)
Q Consensus 236 v~~a 239 (425)
|.-.
T Consensus 94 ~gTv 97 (117)
T 2l9w_A 94 SGTI 97 (117)
T ss_dssp EECH
T ss_pred ecCH
Confidence 8654
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.04 E-value=3.1e-05 Score=59.86 Aligned_cols=74 Identities=16% Similarity=0.138 Sum_probs=63.3
Q ss_pred cceEEEeecCCcccHHHHHHHHhhc-----CCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCCeEEEEE
Q 014397 163 LRKIFVGNVPNDMSADKLLAHFACY-----GEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDGKQLNCR 237 (425)
Q Consensus 163 ~~~l~V~nL~~~~te~~L~~~F~~~-----G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~gr~i~v~ 237 (425)
.++|.|.|||..++++.|+-+|++- |+|++|.... .-|+|+|.+.+.|++.|++..+.|++.+|.|.
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLSLR 79 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEEEE
Confidence 4789999999999999999999772 6888887753 36899999999999999998899999999998
Q ss_pred EcccCCC
Q 014397 238 LADNKKA 244 (425)
Q Consensus 238 ~a~~~~~ 244 (425)
....+..
T Consensus 80 P~~~~~~ 86 (104)
T 2dhx_A 80 PAPPRAP 86 (104)
T ss_dssp ECCCCCC
T ss_pred cCCCCCc
Confidence 7655433
No 384
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.00 E-value=2.2e-05 Score=61.16 Aligned_cols=74 Identities=11% Similarity=0.104 Sum_probs=63.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhc-----CCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCce
Q 014397 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAY-----GELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRV 140 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~l~~~F~~~-----G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~ 140 (425)
....++|-|-+||-.+++..|+.+++++ +.|..+.+..|.. =|+|+|.+..+|-+|.-.++ .+|.+|.
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 3347889999999999999999999999 9999999988843 69999999999999886666 8888888
Q ss_pred EEEEec
Q 014397 141 TVTNLA 146 (425)
Q Consensus 141 ~~v~~~ 146 (425)
|.+...
T Consensus 92 Lr~gTv 97 (117)
T 2l9w_A 92 IRSGTI 97 (117)
T ss_dssp EEEECH
T ss_pred EEecCH
Confidence 777543
No 385
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.47 E-value=0.00029 Score=53.74 Aligned_cols=55 Identities=20% Similarity=0.357 Sum_probs=46.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcC
Q 014397 69 TQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEP 132 (425)
Q Consensus 69 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~ 132 (425)
..+.++| .+|.++...||+++|+.||-| .|+.+-|. .|||.|.+++.|..||..+
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 3455666 999999999999999999854 57777775 7999999999999999865
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.39 E-value=0.00099 Score=51.68 Aligned_cols=74 Identities=15% Similarity=-0.006 Sum_probs=61.6
Q ss_pred CCeEEEcCCCCCC-C----HHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC-CCcCCceEEE
Q 014397 70 QRKLFIRGLGWDT-T----TEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS-KKIDGRVTVT 143 (425)
Q Consensus 70 ~~~lfV~nLp~~~-t----e~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~-~~~~gr~~~v 143 (425)
.++|+|.||+.++ + .++++++|..|.++.+...++.- .=..|.|.++++|.+|-..++ ..+.|+.+.+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4679999999877 2 25789999999999888777652 147899999999999999999 7899999999
Q ss_pred EecccC
Q 014397 144 NLAVAG 149 (425)
Q Consensus 144 ~~~~~~ 149 (425)
-++...
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 988743
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.29 E-value=0.0014 Score=52.29 Aligned_cols=74 Identities=18% Similarity=0.179 Sum_probs=59.9
Q ss_pred CcccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCccCC-eEEEEEE
Q 014397 160 DVSLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKTVDG-KQLNCRL 238 (425)
Q Consensus 160 ~~~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~~~g-r~i~v~~ 238 (425)
....+.|.|-+.|... .+.|.++|++||+|.+...... ..+-.|.|+++.+|++||.++...|++ ..|-|..
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKP 93 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEE
Confidence 4456789999999885 5678889999999998876221 458999999999999999999888875 6677777
Q ss_pred cc
Q 014397 239 AD 240 (425)
Q Consensus 239 a~ 240 (425)
..
T Consensus 94 ~~ 95 (119)
T 1wwh_A 94 CI 95 (119)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 388
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.23 E-value=0.00048 Score=52.72 Aligned_cols=52 Identities=21% Similarity=0.306 Sum_probs=45.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcC
Q 014397 72 KLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEP 132 (425)
Q Consensus 72 ~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~ 132 (425)
.++| .+|.++...||+++|+.|| -..|+.+-|. .|||.|.+++.|..||..+
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 4566 9999999999999999998 4467777775 7999999999999999864
No 389
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.10 E-value=0.0013 Score=51.09 Aligned_cols=74 Identities=14% Similarity=0.038 Sum_probs=60.4
Q ss_pred cceEEEeecCCcc-c----HHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC-CCccCCeEEEE
Q 014397 163 LRKIFVGNVPNDM-S----ADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP-IKTVDGKQLNC 236 (425)
Q Consensus 163 ~~~l~V~nL~~~~-t----e~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~-~~~~~gr~i~v 236 (425)
.++|+|.||+.++ + .+.++++|..|.++.....++.- .-..|.|.++++|.+|..++ ...|+|++|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 3689999998876 2 25778999999988887776542 24689999999999999997 58899999999
Q ss_pred EEcccC
Q 014397 237 RLADNK 242 (425)
Q Consensus 237 ~~a~~~ 242 (425)
-++.+.
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 998743
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.90 E-value=0.0025 Score=48.54 Aligned_cols=63 Identities=19% Similarity=0.171 Sum_probs=51.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCC--CcccEEEEEecchHHHHHHHhcCC
Q 014397 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATG--KSKGYGFITFKHIDGAMLALKEPS 133 (425)
Q Consensus 71 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g--~skG~aFV~F~~~e~A~~Al~~~~ 133 (425)
++|.|++||+.+||+++.+.+..+.++.....+.-+.+. ..-.-|||.|.+.+++....+..+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~ 66 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFD 66 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhC
Confidence 579999999999999999999998877766666544332 233469999999999999988776
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.87 E-value=0.0031 Score=50.28 Aligned_cols=72 Identities=13% Similarity=0.117 Sum_probs=55.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCc-eEEEEe
Q 014397 67 DPTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGR-VTVTNL 145 (425)
Q Consensus 67 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr-~~~v~~ 145 (425)
....+.|-|-++|.+. ...|...|++||+|++..... ..-+-.|.|.++.+|++||.+....+.+. .|-|..
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKP 93 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEE
Confidence 3446779999999884 677899999999999877621 12389999999999999999977777643 344444
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.84 E-value=0.0039 Score=47.57 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=43.4
Q ss_pred ceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhc
Q 014397 164 RKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVD 224 (425)
Q Consensus 164 ~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~ 224 (425)
+.++| .+|.++...||.++|++||- ..|+.+.|. .|||.|.+++.|..|+..
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT-------EEEEECSCHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHh
Confidence 44555 99999999999999999984 356666663 799999999999999875
No 393
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.34 E-value=0.016 Score=46.88 Aligned_cols=78 Identities=21% Similarity=0.215 Sum_probs=56.5
Q ss_pred cceEEEeecCCcccHHHHHHHHhhcCCcee-eeeeccCC--------CC-----CcceEEEEEeCCHHHHHHHHhcCCCc
Q 014397 163 LRKIFVGNVPNDMSADKLLAHFACYGEIEE-GPLGFDKQ--------TG-----KPKGFALFVYKTAEGAQAALVDPIKT 228 (425)
Q Consensus 163 ~~~l~V~nL~~~~te~~L~~~F~~~G~v~~-v~i~~d~~--------~g-----~~kG~afV~F~~~~~A~~A~~~~~~~ 228 (425)
...|.|-+.|.+.+. .|.++|++||.|.+ +.+..+.. +. ....+..|+|+++.+|.+||.++...
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 356788888766554 56678999999877 33322100 00 12467899999999999999999999
Q ss_pred cCCeEEEEEEccc
Q 014397 229 VDGKQLNCRLADN 241 (425)
Q Consensus 229 ~~gr~i~v~~a~~ 241 (425)
|+|.-|-|...++
T Consensus 86 i~G~mIGV~Py~~ 98 (132)
T 3p3d_A 86 FNGVLLGVIPYTK 98 (132)
T ss_dssp ETTEECEEEECCH
T ss_pred eCcEEEEEEECCH
Confidence 9999888887753
No 394
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.29 E-value=0.012 Score=44.79 Aligned_cols=61 Identities=13% Similarity=0.071 Sum_probs=47.5
Q ss_pred ceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCC--cceEEEEEeCCHHHHHHHHhc
Q 014397 164 RKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGK--PKGFALFVYKTAEGAQAALVD 224 (425)
Q Consensus 164 ~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~--~kG~afV~F~~~~~A~~A~~~ 224 (425)
++|.|++||..+||+++.+.++...++........+.+.+ .-.-|||.|.+.+++..-.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~ 64 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDR 64 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 5799999999999999999999887766655544433322 235699999999988888766
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.27 E-value=0.0036 Score=47.87 Aligned_cols=52 Identities=17% Similarity=0.239 Sum_probs=43.1
Q ss_pred ceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhc
Q 014397 164 RKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVD 224 (425)
Q Consensus 164 ~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~ 224 (425)
+.++| .+|.++...||.++|++||- ..|..+.|. .|||.|.+++.|..|+..
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-------EEEEEEEEECHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHh
Confidence 34555 99999999999999999983 456666663 799999999999998885
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.10 E-value=0.0033 Score=62.42 Aligned_cols=58 Identities=12% Similarity=0.144 Sum_probs=44.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC
Q 014397 70 QRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS 133 (425)
Q Consensus 70 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~ 133 (425)
.++|||. .|..+++.+|.++|++||+|.++.+-.++ .-||.|||.+.+++.+++....
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~~~ 110 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNGTH 110 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSSCC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhccC
Confidence 4679998 79999999999999999999998876543 2499999999999998887644
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.85 E-value=0.0053 Score=60.92 Aligned_cols=58 Identities=16% Similarity=0.230 Sum_probs=44.0
Q ss_pred ccceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC
Q 014397 162 SLRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP 225 (425)
Q Consensus 162 ~~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~ 225 (425)
..++|+|. .+..+++.+|.++|++||.|.++....++ .-||.|||.+.+++.+++...
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSSC
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhcc
Confidence 34789997 79999999999999999999998887653 369999999999999887663
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.09 E-value=0.018 Score=44.12 Aligned_cols=65 Identities=15% Similarity=0.107 Sum_probs=46.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCC--CcccEEEEEecchHHHHHHHhcCC
Q 014397 69 TQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATG--KSKGYGFITFKHIDGAMLALKEPS 133 (425)
Q Consensus 69 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g--~skG~aFV~F~~~e~A~~Al~~~~ 133 (425)
.+-+|.|+.||+.+||+++.+.++.+=++.....+.-+.+- ..-.-|||.|++.++.....+..+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~ 74 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFD 74 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHST
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcC
Confidence 34579999999999999999888876444332222222111 122358999999999999998877
No 399
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.81 E-value=0.06 Score=41.16 Aligned_cols=63 Identities=5% Similarity=-0.056 Sum_probs=43.6
Q ss_pred cceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCC--cceEEEEEeCCHHHHHHHHhcC
Q 014397 163 LRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGK--PKGFALFVYKTAEGAQAALVDP 225 (425)
Q Consensus 163 ~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~--~kG~afV~F~~~~~A~~A~~~~ 225 (425)
+.+|.|+.||..+||+++.+.++.+=++.....+..+.+-+ .-.-|||.|.+.++...-.+..
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f 73 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRF 73 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHS
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHc
Confidence 46899999999999999988887654443322222222211 1245899999999988887763
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.54 E-value=0.047 Score=44.10 Aligned_cols=76 Identities=16% Similarity=0.206 Sum_probs=51.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeec---------CCCC-----CcccEEEEEecchHHHHHHHhcCCCC
Q 014397 70 QRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILD---------KATG-----KSKGYGFITFKHIDGAMLALKEPSKK 135 (425)
Q Consensus 70 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---------~~~g-----~skG~aFV~F~~~e~A~~Al~~~~~~ 135 (425)
...|.|-+.|.+ ....|.+.|++||.|.+-.-+.+ +.+. ....+..|+|.++.+|++||.+....
T Consensus 7 e~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 356888889776 45568889999999876211110 0001 12457899999999999999998888
Q ss_pred cCCceEEEEec
Q 014397 136 IDGRVTVTNLA 146 (425)
Q Consensus 136 ~~gr~~~v~~~ 146 (425)
|.+..|-|.+.
T Consensus 86 i~G~mIGV~Py 96 (132)
T 3p3d_A 86 FNGVLLGVIPY 96 (132)
T ss_dssp ETTEECEEEEC
T ss_pred eCcEEEEEEEC
Confidence 88765555443
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=90.65 E-value=0.39 Score=48.38 Aligned_cols=55 Identities=20% Similarity=0.364 Sum_probs=45.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC
Q 014397 70 QRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS 133 (425)
Q Consensus 70 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~ 133 (425)
...++|+ +|..+...+|.++|+.||.| +|+.+.+. .|||.|.+.+.|..+++.+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 4456666 99999999999999999954 56666553 79999999999999998764
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=80.70 E-value=4 Score=40.96 Aligned_cols=53 Identities=21% Similarity=0.269 Sum_probs=41.8
Q ss_pred ceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC
Q 014397 164 RKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP 225 (425)
Q Consensus 164 ~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~ 225 (425)
..++|+ ++..+...+|.+.|+.||.| +|+.+.| -.|||.|.+.++|..++...
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~ 493 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTS 493 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHH
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHH
Confidence 455555 88888999999999999954 5555544 26999999999999888764
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=74.48 E-value=9.8 Score=28.10 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=42.8
Q ss_pred cceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcC
Q 014397 163 LRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDP 225 (425)
Q Consensus 163 ~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~ 225 (425)
...|.|-|+|..+-..++.-.....|---.|+.+ .|.|.|.|.+.++...||.++
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 3567888999999998887766666655555554 367999999999999998873
No 404
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=60.54 E-value=30 Score=23.72 Aligned_cols=58 Identities=2% Similarity=-0.094 Sum_probs=44.6
Q ss_pred cceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCC
Q 014397 163 LRKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIK 227 (425)
Q Consensus 163 ~~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~ 227 (425)
..++.|.++.=.--...|++.+.+ -.|..+.+... .+.+.|+|.+.++..++|+..+.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~Gy 63 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAAGY 63 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHcCC
Confidence 457889998887788899999988 77888777544 45678888877777788876543
No 405
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=60.01 E-value=50 Score=24.44 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=20.1
Q ss_pred cccEEEEEecchHHHHHHHhcCC
Q 014397 111 SKGYGFITFKHIDGAMLALKEPS 133 (425)
Q Consensus 111 skG~aFV~F~~~e~A~~Al~~~~ 133 (425)
..||.||++...++...+|+...
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~ 71 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMP 71 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCT
T ss_pred cCCEEEEEEecchhHHHHHHCCC
Confidence 79999999999999888887654
No 406
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=57.06 E-value=56 Score=24.06 Aligned_cols=57 Identities=18% Similarity=0.082 Sum_probs=46.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcC
Q 014397 68 PTQRKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEP 132 (425)
Q Consensus 68 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~ 132 (425)
..++-|-|-|||..+-..++.-.....|----|..+. |-|.|.|.+.++...|++.+
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHH
Confidence 4567799999999999999988888877555555542 36999999999999999764
No 407
>4gyx_A Type III collagen fragment in A HOST peptide STAB the cysteine knot; collagen triple helix, type III collagen cysteine knot, BLOO clotting; 1.49A {Homo sapiens}
Probab=48.11 E-value=18 Score=20.04 Aligned_cols=14 Identities=50% Similarity=0.994 Sum_probs=6.1
Q ss_pred CCCCCCCCCCC-CCC
Q 014397 407 SPVPRVPPGGM-YPN 420 (425)
Q Consensus 407 ~~~~~~~~~~~-~~~ 420 (425)
+|.||--+|=| |||
T Consensus 5 ppgprgqpgvmgfpg 19 (31)
T 4gyx_A 5 PPGPRGQPGVMGFPG 19 (31)
T ss_dssp CCCCCCCCCCCCCCC
T ss_pred CCCCCCCCccccCCC
Confidence 33444444444 444
No 408
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=38.27 E-value=1.2e+02 Score=25.65 Aligned_cols=124 Identities=16% Similarity=0.142 Sum_probs=64.7
Q ss_pred eEEEcCC----CCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecch---HHHHHHHhcCC-CCc--CCceE
Q 014397 72 KLFIRGL----GWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHI---DGAMLALKEPS-KKI--DGRVT 141 (425)
Q Consensus 72 ~lfV~nL----p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~---e~A~~Al~~~~-~~~--~gr~~ 141 (425)
.+++++| ...+.-.||+++|+..| ..+|+.... +| =|.|.+. ++.+..|+..- ..+ .-..+
T Consensus 8 iaLLRGINVGG~nkv~MadLr~~l~~lG-f~~V~TyI~--SG------NvvF~s~~~~~~l~~~ie~~l~~~fg~~v~v~ 78 (183)
T 2hiy_A 8 ALLVRGINVGGKNKVVMAELRQELTNLG-LEKVESYIN--SG------NIFFTSIDSKAQLVEKLETFFAVHYPFIQSFS 78 (183)
T ss_dssp EEECSSCSCC-CCCCCHHHHHHHHHHHT-CEEEEEETT--TT------EEEEEECSCHHHHHHHHHHHHHHHCTTCCCCE
T ss_pred hhhccceecCCCCcccHHHHHHHHHHcC-CccceEEEe--cC------CEEEecCCCHHHHHHHHHHHHHHhcCCCCCEE
Confidence 4667777 35688999999999987 456665543 32 2555443 22333333221 111 11122
Q ss_pred EEEecccCCCCCCCCCC-CCcccceEEEeecCCcccHHHHHHHHhhcC-CceeeeeeccCCCCCcceEEEE-EeC
Q 014397 142 VTNLAVAGNSGNSTNNP-VDVSLRKIFVGNVPNDMSADKLLAHFACYG-EIEEGPLGFDKQTGKPKGFALF-VYK 213 (425)
Q Consensus 142 ~v~~~~~~~~~~~~~~~-~~~~~~~l~V~nL~~~~te~~L~~~F~~~G-~v~~v~i~~d~~~g~~kG~afV-~F~ 213 (425)
......- ...-...+- ...+..+++|-=|+...+.++|.+.+.... ..+.+.+. ....|+ .|.
T Consensus 79 vrs~~el-~~i~~~~Pf~~~~~~~~~~v~F~~~~~~~~~~~~~l~~~~~~~E~~~~~--------~~~iy~~~~~ 144 (183)
T 2hiy_A 79 LLSLEDF-EAELENLPAWWSRDLARKDFLFYTEGLDVDQVIATVESLELKDEVLYFG--------KLGIFWGKFS 144 (183)
T ss_dssp EEEHHHH-HHHHTTCCGGGGSCCSEEEEEEECTTCCHHHHHHHHHTSCCCSEEEEEC--------SSEEEEEECC
T ss_pred EecHHHH-HHHHHhCCCCccCCCcEEEEEEECCCCChHHHHHHhhccCCCCeEEEEE--------CCEEEEEEeC
Confidence 2221110 000001111 111457888888988999998777665432 34555553 235677 673
No 409
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=37.05 E-value=47 Score=25.10 Aligned_cols=47 Identities=13% Similarity=0.088 Sum_probs=26.2
Q ss_pred cccHHHHHHHH-hhcCCceeeeeeccCC----CCCcceEEEEEeCCHHHHHHH
Q 014397 174 DMSADKLLAHF-ACYGEIEEGPLGFDKQ----TGKPKGFALFVYKTAEGAQAA 221 (425)
Q Consensus 174 ~~te~~L~~~F-~~~G~v~~v~i~~d~~----~g~~kG~afV~F~~~~~A~~A 221 (425)
..+..+|++.+ ..|..-.++.++..-. .++++|||.| |+|.+.|++-
T Consensus 30 tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk~ 81 (98)
T 2g1d_A 30 TPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAMLY 81 (98)
T ss_dssp CCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 45777777666 3444333444443332 3567777755 5666666554
No 410
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=35.71 E-value=71 Score=24.11 Aligned_cols=67 Identities=19% Similarity=0.137 Sum_probs=47.2
Q ss_pred EcCCCCCCCHHHHHHHH-hhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCCCCcCCceEEEEecccC
Q 014397 75 IRGLGWDTTTEGLRSIF-SAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPSKKIDGRVTVTNLAVAG 149 (425)
Q Consensus 75 V~nLp~~~te~~l~~~F-~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~~~~~gr~~~v~~~~~~ 149 (425)
|=.++..++-+||..-. +.||.-.++..+ +. -..|-..+.+|-.+||+.++..-.-+.+.+-+....
T Consensus 21 Ii~f~RPv~f~eL~~Kv~~~fGq~ldL~y~-n~-------EllIpl~sQeDLDkaIellDrss~~kSLrIlL~~~~ 88 (103)
T 2cu1_A 21 ILQFPRPVKLEDLRSKAKIAFGQSMDLHYT-NN-------ELVIPLTTQDDLDKAVELLDRSIHMKSLKILLVING 88 (103)
T ss_dssp EEEEESSCCHHHHHHHHHHHHSSCEEEEEC-SS-------SSCEECCSHHHHHHHHHHHHHCSSCCSEEEEEEECC
T ss_pred EEeccCCccHHHHHHHHHHHhCCeeeEEEe-cc-------eEEEeccCHHHHHHHHHHHccCCcccceEEEEecCC
Confidence 33466778888887554 458887777766 32 377899999999999999875555566666555443
No 411
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=35.68 E-value=1.2e+02 Score=23.44 Aligned_cols=100 Identities=22% Similarity=0.292 Sum_probs=57.5
Q ss_pred cchHHHHHHHhcCC---CCcCCceEEEEecccCCCCCCCCCCCCcccceEEEeecCCcccHHHHH---HHHhhcCCceee
Q 014397 120 KHIDGAMLALKEPS---KKIDGRVTVTNLAVAGNSGNSTNNPVDVSLRKIFVGNVPNDMSADKLL---AHFACYGEIEEG 193 (425)
Q Consensus 120 ~~~e~A~~Al~~~~---~~~~gr~~~v~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~---~~F~~~G~v~~v 193 (425)
.+.|+-++||+++- .+|.+.. .+.... ....|.|.++|..+..+-.+ .+-..|..-..-
T Consensus 11 ddlea~ekalkemirqarkfagtv---tytl~g------------n~l~i~itgvpeqvrkelakeaerl~~efni~v~y 75 (170)
T 4hhu_A 11 DDLEALEKALKEMIRQARKFAGTV---TYTLSG------------NRLVIVITGVPEQVRKELAKEAERLKAEFNINVQY 75 (170)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCEE---EEEEET------------TEEEEEEESCCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CcHHHHHHHHHHHHHHHHhhcceE---EEEEeC------------CEEEEEEeCCcHHHHHHHHHHHHHHHHhcceEEEE
Confidence 46778888888764 3454432 222211 11457888999887654322 222344322333
Q ss_pred eeeccCCCCCcceEEEEEe--CCHHHHHHHHhcCC-----------CccCCeEEEEEEc
Q 014397 194 PLGFDKQTGKPKGFALFVY--KTAEGAQAALVDPI-----------KTVDGKQLNCRLA 239 (425)
Q Consensus 194 ~i~~d~~~g~~kG~afV~F--~~~~~A~~A~~~~~-----------~~~~gr~i~v~~a 239 (425)
.|+ +...|.-.|.| +|.++.++|++++. ..++|..|.+...
T Consensus 76 ~im-----gsgsgvm~i~f~gddlea~ekalkemirqarkfagtvtytl~gn~l~i~it 129 (170)
T 4hhu_A 76 QIM-----GSGSGVMVIVFEGDDLEALEKALKEMIRQARKFAGTVTYTLSGNRLVIVIT 129 (170)
T ss_dssp EEE-----CTTCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEEEECSSEEEEEEE
T ss_pred EEE-----eCCceEEEEEEecCcHHHHHHHHHHHHHHHHhhcceEEEEEeCCEEEEEEe
Confidence 343 33356667777 57889999988752 2366777766654
No 412
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=34.02 E-value=62 Score=24.86 Aligned_cols=47 Identities=17% Similarity=0.086 Sum_probs=27.7
Q ss_pred cccHHHHHHHH-hhcCCceeeeeecc----CCCCCcceEEEEEeCCHHHHHHH
Q 014397 174 DMSADKLLAHF-ACYGEIEEGPLGFD----KQTGKPKGFALFVYKTAEGAQAA 221 (425)
Q Consensus 174 ~~te~~L~~~F-~~~G~v~~v~i~~d----~~~g~~kG~afV~F~~~~~A~~A 221 (425)
.++..+|++.+ ..|+.-.++.|+.. .-.++++|||.| |+|.+.|++-
T Consensus 38 tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 38 TPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 46777887766 44544333333322 224567888855 7788877754
No 413
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=33.24 E-value=74 Score=25.92 Aligned_cols=48 Identities=21% Similarity=0.214 Sum_probs=28.7
Q ss_pred CcccHHHHHHHHhh-cCCceeeeeeccC----CCCCcceEEEEEeCCHHHHHHH
Q 014397 173 NDMSADKLLAHFAC-YGEIEEGPLGFDK----QTGKPKGFALFVYKTAEGAQAA 221 (425)
Q Consensus 173 ~~~te~~L~~~F~~-~G~v~~v~i~~d~----~~g~~kG~afV~F~~~~~A~~A 221 (425)
..++..||++.+.. |..-.++.|+... -.+++.|||.| |+|.+.|.+-
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 35677888877744 5543343333322 23567788866 6777777654
No 414
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=38.73 E-value=9.4 Score=29.46 Aligned_cols=54 Identities=19% Similarity=0.134 Sum_probs=33.8
Q ss_pred ccHHHHHHHHhhcCCceeeeeeccCCCCCcceEE--EEEeCCHHHHHHHHhcCCCccC
Q 014397 175 MSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFA--LFVYKTAEGAQAALVDPIKTVD 230 (425)
Q Consensus 175 ~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~a--fV~F~~~~~A~~A~~~~~~~~~ 230 (425)
.++++|.++..+.. +..+.+.+...+++.. |. +=.|.+.++|++|++.|...+.
T Consensus 34 ~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~W-yvVlyG~Y~s~~~A~~A~~~LP~~l~ 89 (106)
T 2lfv_A 34 SNYDNLNGWAKKEN-LKNYVVYETTRNGQPW-YVLVSGVYASKEEAKKAVSTLPADVQ 89 (106)
Confidence 44566777777665 3455555443334432 22 2378999999999999865553
No 415
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=32.05 E-value=81 Score=26.43 Aligned_cols=48 Identities=10% Similarity=0.152 Sum_probs=34.2
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHH--hhcCCeeEEEEeecCCCCCcccEEEEEecch
Q 014397 72 KLFIRGLGW-D--------TTTEGLRSIF--SAYGELEEAVVILDKATGKSKGYGFITFKHI 122 (425)
Q Consensus 72 ~lfV~nLp~-~--------~te~~l~~~F--~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~ 122 (425)
++.|-|+|. . ....+|++.| +.|.++. |+.+.++ .-..|+|.|+|.+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKD 72 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSS
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCC
Confidence 366777776 2 3457899977 9998865 5666553 24788999999764
No 416
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=29.67 E-value=66 Score=25.79 Aligned_cols=47 Identities=26% Similarity=0.399 Sum_probs=28.6
Q ss_pred cccHHHHHHHH-hhcCCceeeeeecc----CCCCCcceEEEEEeCCHHHHHHH
Q 014397 174 DMSADKLLAHF-ACYGEIEEGPLGFD----KQTGKPKGFALFVYKTAEGAQAA 221 (425)
Q Consensus 174 ~~te~~L~~~F-~~~G~v~~v~i~~d----~~~g~~kG~afV~F~~~~~A~~A 221 (425)
.++..+|++.+ ..|..-.++.++.. .-.+++.|||.| |+|.+.|.+.
T Consensus 34 Tpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk~ 85 (135)
T 3u5c_Y 34 NVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKKF 85 (135)
T ss_dssp CCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHhc
Confidence 46788998877 45554334333322 224567777765 6777777654
No 417
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=28.74 E-value=1.3e+02 Score=20.02 Aligned_cols=57 Identities=11% Similarity=0.086 Sum_probs=41.9
Q ss_pred ceEEEeecCCcccHHHHHHHHhhcCCceeeeeeccCCCCCcceEEEEEeC----CHHHHHHHHhcCC
Q 014397 164 RKIFVGNVPNDMSADKLLAHFACYGEIEEGPLGFDKQTGKPKGFALFVYK----TAEGAQAALVDPI 226 (425)
Q Consensus 164 ~~l~V~nL~~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kG~afV~F~----~~~~A~~A~~~~~ 226 (425)
.++.|.++.-.--...|++.+.+.-.|..+.+... .+.+.|+|. +.++..++|+..+
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~G 64 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALL------QNRADVVFDPNLVKEEDIKEEIEDAG 64 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHHT
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHCC
Confidence 45778888777777889999988877877777554 346789885 5667777777654
No 418
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=27.35 E-value=1.5e+02 Score=22.43 Aligned_cols=50 Identities=20% Similarity=0.252 Sum_probs=30.2
Q ss_pred CCCCCHHHHHHHHhh-cCC---eeEEEEee-cCCCCCcccEEEEEecchHHHHHHH
Q 014397 79 GWDTTTEGLRSIFSA-YGE---LEEAVVIL-DKATGKSKGYGFITFKHIDGAMLAL 129 (425)
Q Consensus 79 p~~~te~~l~~~F~~-~G~---i~~v~i~~-~~~~g~skG~aFV~F~~~e~A~~Al 129 (425)
-.+++..+|++.++. |.. +.-|.-++ .--.++++|||.| |.|.+.|++.-
T Consensus 27 ~~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 27 GSTPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp SSCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 367789999988876 443 22222222 2234578888866 67777766554
No 419
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=27.02 E-value=89 Score=31.07 Aligned_cols=60 Identities=15% Similarity=0.241 Sum_probs=31.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhc---CCeeEEEEeecCCCCCcccEEE-EEecchHHHHHHHhc
Q 014397 70 QRKLFIRGLGWDTTTEGLRSIFSAY---GELEEAVVILDKATGKSKGYGF-ITFKHIDGAMLALKE 131 (425)
Q Consensus 70 ~~~lfV~nLp~~~te~~l~~~F~~~---G~i~~v~i~~~~~~g~skG~aF-V~F~~~e~A~~Al~~ 131 (425)
.++|.|..||+.++.+.|.+..... ++|.-|.-++|. +.+ .|.-| |+++....++..++.
T Consensus 275 ~~~IvITElPy~v~k~~lie~I~~lv~~kki~~I~dirDe-sd~-~gvrivIelk~~~~~e~vl~~ 338 (514)
T 2inr_A 275 RKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDE-TDR-TGLRIAIELKKDVNSESIKNY 338 (514)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHHHHHTSCC---CEEEC-CBT-TBCCEEEEC------CHHHHH
T ss_pred ccEEEEEecCceeeHHHHHHHHHHHHhcCCcCccchhhhc-CCC-CceEEEEEECCCcCHHHHHHH
Confidence 4689999999999999887765542 444444445553 222 23444 456655555555543
No 420
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=27.00 E-value=1.5e+02 Score=22.45 Aligned_cols=48 Identities=8% Similarity=0.036 Sum_probs=29.0
Q ss_pred CCCCCHHHHHHHHhh-cCC---eeEEE-EeecCCCCCcccEEEEEecchHHHHH
Q 014397 79 GWDTTTEGLRSIFSA-YGE---LEEAV-VILDKATGKSKGYGFITFKHIDGAML 127 (425)
Q Consensus 79 p~~~te~~l~~~F~~-~G~---i~~v~-i~~~~~~g~skG~aFV~F~~~e~A~~ 127 (425)
-.+++..+|++.++. |.. +.-|. +...--.++++|||.| |.|.+.|++
T Consensus 27 ~~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 27 AATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp SCCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 367789999988876 342 22222 2222234678888876 677766654
No 421
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.20 E-value=1.9e+02 Score=21.08 Aligned_cols=55 Identities=9% Similarity=0.163 Sum_probs=38.0
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEEeecCCCCCcccEEEEEecchHHHHHHHh
Q 014397 73 LFIRGLGWDTTTEGLRSIFSA-YG-ELEEAVVILDKATGKSKGYGFITFKHIDGAMLALK 130 (425)
Q Consensus 73 lfV~nLp~~~te~~l~~~F~~-~G-~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~ 130 (425)
.|+-.++..++..+|++.++. |+ .|.+|..+..+ .+ .=-|||.+....+|.....
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~-~~--~KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITP-RG--EKKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECT-TS--CEEEEEEECTTSCHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcC-CC--ceEEEEEcCCCCcHHHHHH
Confidence 344456778999999998887 44 57777776643 12 1249999988877776543
No 422
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=24.33 E-value=1.9e+02 Score=21.78 Aligned_cols=63 Identities=8% Similarity=0.065 Sum_probs=42.4
Q ss_pred EEeecCCcccHHHHHHHH-hhcCCceeeeeeccCCCCCcceEEEEEeCCHHHHHHHHhcCCCc--cCCeEEEEE
Q 014397 167 FVGNVPNDMSADKLLAHF-ACYGEIEEGPLGFDKQTGKPKGFALFVYKTAEGAQAALVDPIKT--VDGKQLNCR 237 (425)
Q Consensus 167 ~V~nL~~~~te~~L~~~F-~~~G~v~~v~i~~d~~~g~~kG~afV~F~~~~~A~~A~~~~~~~--~~gr~i~v~ 237 (425)
+|-.++..+.-+||.... +.||.-.++... +. -..|-..+.++..+||+.+... ...-+|.+.
T Consensus 20 RIi~f~RPv~f~eL~~Kv~~~fGq~ldL~y~-n~-------EllIpl~sQeDLDkaIellDrss~~kSLrIlL~ 85 (103)
T 2cu1_A 20 RILQFPRPVKLEDLRSKAKIAFGQSMDLHYT-NN-------ELVIPLTTQDDLDKAVELLDRSIHMKSLKILLV 85 (103)
T ss_dssp EEEEEESSCCHHHHHHHHHHHHSSCEEEEEC-SS-------SSCEECCSHHHHHHHHHHHHHCSSCCSEEEEEE
T ss_pred EEEeccCCccHHHHHHHHHHHhCCeeeEEEe-cc-------eEEEeccCHHHHHHHHHHHccCCcccceEEEEe
Confidence 444567778888887655 667876666655 22 2578899999999999997433 344444433
No 423
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=23.25 E-value=1.1e+02 Score=27.64 Aligned_cols=46 Identities=15% Similarity=0.276 Sum_probs=33.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEecchHHHHHHHhcCC
Q 014397 71 RKLFIRGLGWDTTTEGLRSIFSAYGELEEAVVILDKATGKSKGYGFITFKHIDGAMLALKEPS 133 (425)
Q Consensus 71 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~~~~ 133 (425)
..+.|+|||+.++..-|..+++. ..+..+.++.. .|-|++.+....
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~Q----------------kEva~Rl~A~pg 156 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLVQ----------------KEVAERMTARPK 156 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEEE----------------HHHHHHHTCCTT
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEee----------------eeeeeecccCCC
Confidence 46899999999999999999987 55555444433 456677665544
No 424
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=22.10 E-value=1.3e+02 Score=25.08 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=25.7
Q ss_pred cHHHHHHHH--hhcCCceeeeeeccCCCCCcceEEEEEeCC
Q 014397 176 SADKLLAHF--ACYGEIEEGPLGFDKQTGKPKGFALFVYKT 214 (425)
Q Consensus 176 te~~L~~~F--~~~G~v~~v~i~~d~~~g~~kG~afV~F~~ 214 (425)
+..+|++.| +.|..++ |+.+.++ .-.+|+|.|+|.+
T Consensus 34 s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~ 71 (172)
T 4e8u_A 34 SGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNK 71 (172)
T ss_dssp CSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCS
T ss_pred CHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecC
Confidence 457899977 9998866 4444443 2367899999975
No 425
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=21.51 E-value=82 Score=23.16 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=20.7
Q ss_pred CceeeeeeccCCCCCcceEEEEEeCC
Q 014397 189 EIEEGPLGFDKQTGKPKGFALFVYKT 214 (425)
Q Consensus 189 ~v~~v~i~~d~~~g~~kG~afV~F~~ 214 (425)
+|++|+|..-...++-++||-|+|++
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 56777776665678899999999975
No 426
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=21.02 E-value=2.4e+02 Score=20.43 Aligned_cols=55 Identities=9% Similarity=0.056 Sum_probs=37.9
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEEeecCCCCCcccEEEEEecchHHHHHHHh
Q 014397 73 LFIRGLGWDTTTEGLRSIFSA-YG-ELEEAVVILDKATGKSKGYGFITFKHIDGAMLALK 130 (425)
Q Consensus 73 lfV~nLp~~~te~~l~~~F~~-~G-~i~~v~i~~~~~~g~skG~aFV~F~~~e~A~~Al~ 130 (425)
-|+-.++.++|..+|++.++. |+ +|.+|..+.-+. + .=-|||++...++|.....
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~-~--~KKA~VtL~~g~~aid~~~ 80 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMD-G--EKKAVVRLSEDDDAQEVAS 80 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT-S--SEEEEEEECTTSCHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCC-C--ceEEEEEECCCCcHHHHHH
Confidence 345556778999999988877 44 577777766542 1 2259999988877665544
No 427
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=20.17 E-value=1.1e+02 Score=30.08 Aligned_cols=62 Identities=18% Similarity=0.262 Sum_probs=37.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhhc---CCeeEEEEeecCCCCCcccEE-EEEecchHHHHHHHh
Q 014397 68 PTQRKLFIRGLGWDTTTEGLRSIFSAY---GELEEAVVILDKATGKSKGYG-FITFKHIDGAMLALK 130 (425)
Q Consensus 68 ~~~~~lfV~nLp~~~te~~l~~~F~~~---G~i~~v~i~~~~~~g~skG~a-FV~F~~~e~A~~Al~ 130 (425)
...++|.|..||+.++.+.|.+..... +.|..|.-++|..+.+ .+.- -|+++....++..+.
T Consensus 234 ~~~~~ivItElPy~v~~~~lie~i~~l~~~kki~~I~d~rDe~sd~-~gvrivI~lk~~~~~~~~l~ 299 (470)
T 3ilw_A 234 RGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDR-VGLRIVIEIKRDAVAKVVIN 299 (470)
T ss_dssp TCCEEEEEEECCTTCCHHHHHHHHHHHHHTTSCTTEEEEEECCBTT-TBCCEEEEECTTSCHHHHHH
T ss_pred CCCCEEEEEeCCCccCHHHHHHHHHHHHhcCCCCccccccccCCCC-CceEEEEEECCCCCHHHHHH
Confidence 345679999999999999887766542 4444444555542332 2333 356665555554444
Done!