Query 014399
Match_columns 425
No_of_seqs 152 out of 496
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 04:45:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014399.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014399hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03662 Glyco_hydro_79n: Glyc 100.0 4.6E-77 1E-81 568.6 -1.7 318 25-343 2-319 (319)
2 COG3534 AbfA Alpha-L-arabinofu 100.0 4.9E-34 1.1E-38 275.7 23.2 368 25-424 3-428 (501)
3 PF01229 Glyco_hydro_39: Glyco 99.4 3.4E-12 7.4E-17 132.2 16.9 290 76-393 43-368 (486)
4 PF11790 Glyco_hydro_cc: Glyco 98.9 1.6E-08 3.5E-13 95.1 12.1 106 186-320 63-176 (239)
5 PF00150 Cellulase: Cellulase 98.5 1.3E-06 2.9E-11 83.6 13.5 219 74-324 22-251 (281)
6 PF12891 Glyco_hydro_44: Glyco 98.5 4.1E-07 9E-12 83.7 7.5 96 172-271 103-237 (239)
7 PF02055 Glyco_hydro_30: O-Gly 98.4 1.2E-05 2.7E-10 83.0 16.4 224 175-423 207-461 (496)
8 PF07745 Glyco_hydro_53: Glyco 98.2 3E-05 6.4E-10 75.9 14.5 203 71-322 22-242 (332)
9 PF12876 Cellulase-like: Sugar 97.9 2.2E-05 4.7E-10 61.9 4.8 75 186-269 8-88 (88)
10 COG5520 O-Glycosyl hydrolase [ 97.5 0.0015 3.2E-08 63.1 12.8 209 177-422 157-371 (433)
11 smart00633 Glyco_10 Glycosyl h 97.3 0.049 1.1E-06 51.7 19.7 93 128-231 12-119 (254)
12 smart00813 Alpha-L-AF_C Alpha- 97.2 0.0021 4.6E-08 58.2 8.9 54 371-424 64-126 (189)
13 COG3867 Arabinogalactan endo-1 97.0 0.13 2.8E-06 49.0 19.3 213 72-321 62-287 (403)
14 PRK10150 beta-D-glucuronidase; 96.8 0.089 1.9E-06 56.4 19.1 67 188-271 408-474 (604)
15 COG3664 XynB Beta-xylosidase [ 96.8 0.011 2.4E-07 58.4 10.6 181 189-393 105-300 (428)
16 PF14587 Glyco_hydr_30_2: O-Gl 96.5 0.038 8.3E-07 54.8 12.1 167 137-321 109-312 (384)
17 PF06964 Alpha-L-AF_C: Alpha-L 96.4 0.012 2.6E-07 52.6 7.4 88 330-424 18-115 (177)
18 PF02836 Glyco_hydro_2_C: Glyc 95.8 0.19 4.1E-06 48.8 13.4 82 135-230 62-151 (298)
19 PF00332 Glyco_hydro_17: Glyco 94.7 0.43 9.2E-06 46.7 11.8 193 74-324 14-242 (310)
20 PF03198 Glyco_hydro_72: Gluca 93.1 5.7 0.00012 38.5 15.8 128 135-271 82-216 (314)
21 COG5309 Exo-beta-1,3-glucanase 92.6 3.2 6.9E-05 39.2 12.7 154 135-326 90-248 (305)
22 KOG4701 Chitinase [Cell wall/m 80.8 46 0.00099 33.2 13.1 159 134-332 92-270 (568)
23 PF14488 DUF4434: Domain of un 80.3 20 0.00043 31.6 10.0 90 132-240 65-161 (166)
24 TIGR03356 BGL beta-galactosida 78.9 5.1 0.00011 41.1 6.6 100 77-201 58-165 (427)
25 PF02449 Glyco_hydro_42: Beta- 76.5 13 0.00028 37.3 8.7 56 78-155 15-70 (374)
26 PF02449 Glyco_hydro_42: Beta- 74.2 17 0.00036 36.5 8.8 77 302-383 281-367 (374)
27 PF02057 Glyco_hydro_59: Glyco 73.9 34 0.00073 36.8 11.0 153 183-387 168-335 (669)
28 KOG2566 Beta-glucocerebrosidas 73.7 1E+02 0.0022 30.9 15.0 51 373-424 434-486 (518)
29 COG2247 LytB Putative cell wal 60.0 12 0.00026 36.3 4.1 99 73-190 87-189 (337)
30 PF00331 Glyco_hydro_10: Glyco 59.5 1.8E+02 0.0039 28.4 16.4 220 129-381 56-317 (320)
31 PRK15014 6-phospho-beta-glucos 58.4 24 0.00052 36.8 6.4 102 79-200 75-181 (477)
32 PRK10340 ebgA cryptic beta-D-g 58.0 46 0.001 38.2 9.1 82 135-230 381-469 (1021)
33 PRK09525 lacZ beta-D-galactosi 57.8 80 0.0017 36.3 10.8 82 135-230 397-482 (1027)
34 PRK09852 cryptic 6-phospho-bet 57.2 23 0.00051 36.8 6.0 103 79-201 77-184 (474)
35 COG3250 LacZ Beta-galactosidas 55.8 41 0.00089 37.4 7.9 60 135-200 347-409 (808)
36 PLN02849 beta-glucosidase 52.6 28 0.0006 36.6 5.7 68 132-201 119-191 (503)
37 PRK09589 celA 6-phospho-beta-g 49.8 34 0.00073 35.7 5.8 68 132-201 108-180 (476)
38 PLN02814 beta-glucosidase 49.3 32 0.0007 36.1 5.6 68 132-201 117-189 (504)
39 PRK13511 6-phospho-beta-galact 48.8 36 0.00079 35.3 5.9 100 79-201 60-164 (469)
40 PLN02998 beta-glucosidase 45.0 38 0.00083 35.4 5.4 67 132-201 122-194 (497)
41 PF00232 Glyco_hydro_1: Glycos 44.4 25 0.00054 36.3 3.9 67 132-201 99-170 (455)
42 TIGR01732 tiny_TM_bacill conse 44.3 14 0.00031 21.7 1.1 12 3-14 10-21 (26)
43 PRK09593 arb 6-phospho-beta-gl 43.6 55 0.0012 34.1 6.3 68 132-201 114-186 (478)
44 TIGR01233 lacG 6-phospho-beta- 43.0 49 0.0011 34.3 5.8 100 79-201 59-163 (467)
45 PF10566 Glyco_hydro_97: Glyco 40.5 60 0.0013 31.1 5.5 129 128-268 28-157 (273)
46 KOG0564 5,10-methylenetetrahyd 38.2 1.2E+02 0.0027 31.4 7.4 64 130-201 90-159 (590)
47 COG4130 Predicted sugar epimer 34.4 3.8E+02 0.0083 24.8 12.2 80 135-227 52-134 (272)
48 COG2723 BglB Beta-glucosidase/ 34.1 1E+02 0.0023 31.8 6.3 106 76-201 62-172 (460)
49 cd06543 GH18_PF-ChiA-like PF-C 33.5 37 0.0008 32.9 2.9 46 142-197 219-265 (294)
50 PF01522 Polysacc_deac_1: Poly 33.4 1.9E+02 0.0042 23.0 7.0 103 131-257 17-119 (123)
51 PF09680 Tiny_TM_bacill: Prote 31.8 33 0.00072 19.8 1.3 12 3-14 8-19 (24)
52 TIGR02764 spore_ybaN_pdaB poly 29.3 4E+02 0.0086 23.5 11.0 98 135-257 22-120 (191)
53 COG2730 BglC Endoglucanase [Ca 28.1 3.9E+02 0.0085 27.1 9.5 93 133-227 117-218 (407)
54 COG0381 WecB UDP-N-acetylgluco 27.8 3.8E+02 0.0083 27.0 8.9 90 216-319 15-104 (383)
55 PLN02803 beta-amylase 26.9 1.6E+02 0.0034 30.9 6.2 94 131-230 143-245 (548)
56 PF01870 Hjc: Archaeal hollida 26.3 1.8E+02 0.004 22.6 5.2 71 76-154 4-76 (88)
57 COG1591 Holliday junction reso 26.0 1.9E+02 0.004 24.6 5.4 73 75-155 10-89 (137)
58 PLN02161 beta-amylase 25.2 1.7E+02 0.0036 30.7 5.9 94 131-230 153-255 (531)
59 PF04551 GcpE: GcpE protein; 25.2 1.7E+02 0.0037 29.1 5.8 62 71-157 81-143 (359)
60 PF07172 GRP: Glycine rich pro 25.0 51 0.0011 26.2 1.9 14 9-22 15-28 (95)
61 TIGR03006 pepcterm_polyde poly 24.9 6E+02 0.013 24.1 11.8 101 134-258 30-133 (265)
62 COG4124 ManB Beta-mannanase [C 24.5 5E+02 0.011 25.8 8.8 114 191-321 183-299 (355)
63 PF03032 Brevenin: Brevenin/es 24.0 48 0.001 22.6 1.3 19 3-21 7-25 (46)
64 TIGR01212 radical SAM protein, 23.9 6.2E+02 0.013 24.4 9.6 125 128-274 90-220 (302)
65 PF02156 Glyco_hydro_26: Glyco 23.6 2.4E+02 0.0053 27.5 6.7 80 184-271 148-232 (311)
66 PRK10984 DNA-binding transcrip 23.4 85 0.0018 26.2 2.9 31 73-104 7-37 (127)
67 PF07417 Crl: Transcriptional 22.8 63 0.0014 26.9 2.0 30 73-103 5-34 (125)
68 PF10960 DUF2762: Protein of u 21.6 59 0.0013 24.3 1.5 14 2-15 13-26 (71)
69 PRK13210 putative L-xylulose 5 20.7 6.9E+02 0.015 23.3 10.1 87 132-227 16-103 (284)
70 PF06692 MNSV_P7B: Melon necro 20.4 2.4E+02 0.0052 19.9 4.1 44 2-49 15-58 (61)
No 1
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=100.00 E-value=4.6e-77 Score=568.62 Aligned_cols=318 Identities=55% Similarity=1.066 Sum_probs=153.4
Q ss_pred eEEEEecCCCcccccCCCeeEEEeccCCCCCCCCCCCCCCCcccccCCCCcHHHHHHHHHcCCceEecCCcccceeeeec
Q 014399 25 RVTIFVDATKTVATNDEHFICATVDWWPHDKCNYNHCPWGNSSVINLDLSHPLLANAIQAFQSLRIRIGGSLQDQVLYDV 104 (425)
Q Consensus 25 ~~~v~i~~~~~~~~i~~~f~g~sie~~~~~~~~~~~~~w~~~~~~~~~~~~~~l~~l~~~l~p~~LRiGG~~~D~~~~~~ 104 (425)
.++|.|+...+++++|++|+|.++||||++||+|++|+||++|++++||+++.|++++|+|+|.+||+||+.+|+.+|+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~f~catldwwp~~kc~y~~~~w~~as~~nlDL~n~~L~~a~~al~P~~iRvGGslqD~v~Y~~ 81 (319)
T PF03662_consen 2 DGTVVVDGSTAIATTDENFVCATLDWWPPSKCDYGQCSWGNASILNLDLSNPILINAAKALSPLYIRVGGSLQDQVIYDT 81 (319)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcCCCCCccCccccccchhhHHHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCCChHHHHHHHHHHHH
Q 014399 105 GDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTIS 184 (425)
Q Consensus 105 ~~~~~~~~p~~~~~~~~~g~~~~~i~~~~~d~~~~f~~~~g~~~i~~lN~~~~~~~~~~~~~~~~w~~~~A~~~~~y~~~ 184 (425)
+...+||.|+.++++..|||+++|+++++||++++||+++|+++|||||++.|+....++++.++|+++||+++++|+.+
T Consensus 82 ~~~~~~c~~~~~~~~~~~~fs~~clt~~rwd~l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~s 161 (319)
T PF03662_consen 82 GDNKQPCSPFVKNASGLFGFSNGCLTMSRWDELNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTAS 161 (319)
T ss_dssp ------------------------------HHHHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEES
T ss_pred cccccccccccccccccccccccccchhHHHHHHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHH
Confidence 98788999888888889999999999999999999999999999999999988643333345689999999999999999
Q ss_pred cCCccceeeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCeEeCCCCCCCHHHHHHHHhhhCCCccceE
Q 014399 185 MGYQIDSWEYGNELSGRTSIGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGFFDQEWYAKFLQVSGSNVVNGV 264 (425)
Q Consensus 185 ~~~~v~~wElGNEpd~~~~~~~~~t~~~Ya~d~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~w~~~~l~~~g~~~id~v 264 (425)
++|+|++|||||||++. +.+.++++++|++|+.+++++|+++|++...+|+++||++..+.+|+++||++.+++.||+|
T Consensus 162 kgy~I~~WELGNEl~g~-g~~~~v~a~qyakD~~~Lr~il~~iy~~~~~~P~v~gP~~~~d~~w~~~FL~~~g~~~vD~v 240 (319)
T PF03662_consen 162 KGYNIDSWELGNELNGS-GVGASVSAEQYAKDFIQLRKILNEIYKNALPGPLVVGPGGFFDADWLKEFLKASGPGVVDAV 240 (319)
T ss_dssp S-GGG--------HHHH-SSSTT--HHHHHHHH---HHHHHHHHHH-TT---EEEEEESS-GGGHHHHHHHTTTT--SEE
T ss_pred cCCCccccccccccCCC-CCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCCeEECCCCCCCHHHHHHHHHhcCCCccCEE
Confidence 99999999999999986 77889999999999999999999999887788999999998789999999999887569999
Q ss_pred EEeecCCCCCCChhhhhhccChhhhhhHHHHHHHHHHHHHHhCCCCceEEeccccCcCCCCCCcchHHHHHHHHHHHhh
Q 014399 265 THHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGAYNSGGRHVSNTFVNSFWYLDQLG 343 (425)
Q Consensus 265 s~H~Y~~~~g~~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~~~~~p~wl~Etns~~~~G~~~vs~tf~aalw~lD~l~ 343 (425)
|||+|+.++|.|+.+.+++++|.+|+++..+++.+++++++++|++|+|||||+++|++|+++|||+|+++|||||+||
T Consensus 241 T~H~Y~lg~g~d~~l~~~~l~p~~Ld~~~~~~~~~~~~v~~~~p~~~~WlGEtg~Ay~gG~~~vSdtFv~~FwwLDqLG 319 (319)
T PF03662_consen 241 TWHHYNLGSGRDPALIEDFLNPSYLDTLADTFQKLQQVVQEYGPGKPVWLGETGSAYNGGAPGVSDTFVAGFWWLDQLG 319 (319)
T ss_dssp EEEEEEE--TT-TT-HHHHTS--HHHHHHHHHHHHH-----HHH---EEEEEEEEESTT--TTTTTSTHHHHHHHHHH-
T ss_pred EEEecCCCCCchHHHHHHhcChhhhhHHHHHHHHHhhhhcccCCCCCeEEeCcccccCCCCCCccHHHHHHHHHHHhhC
Confidence 9999999878888888999999999999999999999999999999999999999999999999999999999999996
No 2
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.9e-34 Score=275.75 Aligned_cols=368 Identities=16% Similarity=0.166 Sum_probs=262.2
Q ss_pred eEEEEecCCCcccccCCCeeEEEeccCCCCCCCCCCCCCCCcccccCCCCcHHHHHHHHHcCCceEec-CCcccceeeee
Q 014399 25 RVTIFVDATKTVATNDEHFICATVDWWPHDKCNYNHCPWGNSSVINLDLSHPLLANAIQAFQSLRIRI-GGSLQDQVLYD 103 (425)
Q Consensus 25 ~~~v~i~~~~~~~~i~~~f~g~sie~~~~~~~~~~~~~w~~~~~~~~~~~~~~l~~l~~~l~p~~LRi-GG~~~D~~~~~ 103 (425)
..++.|+++..++.|+.+++|+++| +.++|.|+|..-+.+..++.+..+.+++.++|.|.+|+||+ |||.+|.|+|.
T Consensus 3 ~a~~~v~~d~~ig~I~k~iYG~F~E--HlGr~vY~Giyepd~p~~d~~G~RkDVle~lk~Lk~P~lR~PGGnFvs~Y~We 80 (501)
T COG3534 3 KARAVVDTDYTIGKIDKRIYGHFIE--HLGRAVYEGIYEPDSPIADERGFRKDVLEALKDLKIPVLRWPGGNFVSGYHWE 80 (501)
T ss_pred ccceeechhhccCcchhhhhhHHHH--hhccceeeeeecCCCCCcchhhhHHHHHHHHHhcCCceeecCCcccccccccc
Confidence 3567899999999999999999999 88999999986677777777788999999999999999995 99999999999
Q ss_pred cCCCCCCCCCCcC------CCCCccCccccccchhhHHHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCCChHHHHH
Q 014399 104 VGDLKAPCHPFRK------MKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARD 177 (425)
Q Consensus 104 ~~~~~~~~~p~~~------~~~~~~g~~~~~i~~~~~d~~~~f~~~~g~~~i~~lN~~~~~~~~~~~~~~~~w~~~~A~~ 177 (425)
++.++...+|.+. .+++.||+ +||++||+.+|++|++.+|++++ ...+|++
T Consensus 81 DGIGP~e~Rp~rldlaW~t~EtN~~Gt----------~EF~~~~e~iGaep~~avN~Gsr-------------gvd~ar~ 137 (501)
T COG3534 81 DGIGPREERPRRLDLAWGTTETNEFGT----------HEFMDWCELIGAEPYIAVNLGSR-------------GVDEARN 137 (501)
T ss_pred cCcCchhhCchhhcccccccccccccH----------HHHHHHHHHhCCceEEEEecCCc-------------cHHHHHH
Confidence 9988776676543 37778886 99999999999999999999886 5789999
Q ss_pred HHHHHH----------------HcCCccceeeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCeEeCCC
Q 014399 178 FLKYTI----------------SMGYQIDSWEYGNELSGRTSIGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPG 241 (425)
Q Consensus 178 ~~~y~~----------------~~~~~v~~wElGNEpd~~~~~~~~~t~~~Ya~d~~~~~~~~~~~~~~~~~~~~~~gp~ 241 (425)
|++||+ +++++|++|.||||+|+.|++|+. ++.+|++-..++++++|=++|+++ ..+.|.+
T Consensus 138 ~vEY~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm~GpWq~G~~-~a~EY~~~A~e~~k~~k~~d~t~e--~~v~g~a 214 (501)
T COG3534 138 WVEYCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEMDGPWQCGHK-TAPEYGRLANEYRKYMKYFDPTIE--NVVCGSA 214 (501)
T ss_pred HHHHccCCCCChhHHHHHhcCCCCCcccceEEeccccCCCcccccc-cCHHHHHHHHHHHHHHhhcCcccc--ceEEeec
Confidence 999985 357889999999999999888864 677888888889999998888753 3444433
Q ss_pred C---CCCHHHHHHHHhhhCCCccceEEEeecCCCCCCCh-hhhhhccCh-hhhhhHHHHHHHHHHHHHHhCC--CCceEE
Q 014399 242 G---FFDQEWYAKFLQVSGSNVVNGVTHHIYNLGPGVDP-NLVSKILNP-QRLSRVSETFGNLKQTIEKHGP--WASAWV 314 (425)
Q Consensus 242 ~---~~~~~w~~~~l~~~g~~~id~vs~H~Y~~~~g~~~-~~~~~ll~~-~~l~~~~~~~~~~~~~~~~~~~--~~p~wl 314 (425)
+ ..++.|.+.+|..+.+ .+|++|+|+|..+...+. .....-|.. .+++.+. ..+.-+.+++.+ +..+-+
T Consensus 215 ~~~n~~~~~W~~~vl~~~~e-~vD~ISlH~Y~Gn~~~~t~ny~~~~~~~~~~i~~l~---~~~d~Vk~k~r~kk~v~l~f 290 (501)
T COG3534 215 NGANPTDPNWEAVVLEEAYE-RVDYISLHYYKGNATDDTPNYWAKSLKLDRYIDDLI---KKIDYVKAKKRSKKRVGLSF 290 (501)
T ss_pred CCCCCCchHHHHHHHHHHhh-hcCeEEEEEecCccccCcHHHHHHHhhhhHHHHHHH---HHHHHHHhccccccceeEEE
Confidence 2 2467999999998877 599999999964321111 111111111 0111111 111112223433 355678
Q ss_pred eccccCcCCCC-----------CC---cchHHHHHHHHHHHhhccccccceEEEE--eeccCcccc-CCCC-CCCCCCcc
Q 014399 315 GESGGAYNSGG-----------RH---VSNTFVNSFWYLDQLGMSSKYNTKVYCR--QTLVGGNYG-LLNA-TTFIPNPD 376 (425)
Q Consensus 315 ~Etns~~~~G~-----------~~---vs~tf~aalw~lD~l~~~A~~g~~~v~~--q~~~gg~Y~-l~~~-~~~~p~P~ 376 (425)
.|+|..+..-. |+ --.+|-.||...-.+..++++.-+|.+. -+++.---. +... +....+|.
T Consensus 291 DEWnvWy~~~~~d~~~~~w~~~p~~Le~~ytl~Dal~~g~~l~~f~k~sdrV~iAniAQlVNvi~ai~~ekgg~~~~~~~ 370 (501)
T COG3534 291 DEWNVWYHVRKEDLDRIPWGTAPGLLEQIYTLEDALFAGSLLNIFHKHSDRVRIANIAQLVNVLAAIMTEKGGPAWLTPI 370 (501)
T ss_pred ecccceeecchhhhccccCCCCCccccccchHHHHHHHHHHHHHHHhhcceeehhHHHHHHHHhhheeecCCCcceeeeh
Confidence 99998876411 11 1134555555555566666655544321 112110000 1111 12445899
Q ss_pred hHHHHHHHHhcCCceeEeeeCCC----------CceEEEEEEecCCCcEEEEEEeCcc
Q 014399 377 YYSALLWHRLMGKGVLSVATDGS----------SSLRSYAHCSKERVSVVFISISLLI 424 (425)
Q Consensus 377 Yy~~ll~~~~~G~~vl~~~~~~~----------~~~~~YA~~~~~~g~l~l~liN~~~ 424 (425)
||...+++.+.+...|.+.++++ +.+.+-|.+..+.|.|++++||+++
T Consensus 371 y~~~~~~~~~g~~~~l~~~v~~p~yd~~~~~~vp~ld~sas~~~~~~~l~i~vvN~~~ 428 (501)
T COG3534 371 YYPFQMASVHGRGTALKVAVDSPTYDCELAEDVPYLDASASYDEEGGELTIFVVNRAL 428 (501)
T ss_pred hhhhhheeeccCceEEEEEeccCceeccccccCcceeeeeeecccCCeEEEEEEeccc
Confidence 99999999998877787776532 3577777777645889999999875
No 3
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=99.43 E-value=3.4e-12 Score=132.19 Aligned_cols=290 Identities=16% Similarity=0.196 Sum_probs=145.2
Q ss_pred HHHHHHHHHcCCceEecCCcccceee-eecCCCCCCCCCCcCCCCCccCccccccchhhHHHHHHHHhhcCCEEEEEeec
Q 014399 76 PLLANAIQAFQSLRIRIGGSLQDQVL-YDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNA 154 (425)
Q Consensus 76 ~~l~~l~~~l~p~~LRiGG~~~D~~~-~~~~~~~~~~~p~~~~~~~~~g~~~~~i~~~~~d~~~~f~~~~g~~~i~~lN~ 154 (425)
..|..+.+.+|--+||+=|-..|-+. +.... ++.. ..+.-+..|++++|..+.|++|++-|.+
T Consensus 43 ~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~-----------~~~~-----~~Ynf~~lD~i~D~l~~~g~~P~vel~f 106 (486)
T PF01229_consen 43 EQLRELQEELGFRYVRFHGLFSDDMMVYSESD-----------EDGI-----PPYNFTYLDQILDFLLENGLKPFVELGF 106 (486)
T ss_dssp HHHHHHHCCS--SEEEES-TTSTTTT-EEEEE-----------TTEE-----EEE--HHHHHHHHHHHHCT-EEEEEE-S
T ss_pred HHHHHHHhccCceEEEEEeeccCchhhccccc-----------cCCC-----CcCChHHHHHHHHHHHHcCCEEEEEEEe
Confidence 44555556677899999887666433 22100 0000 0145567899999999999999999875
Q ss_pred CCCCcccCCCCC-CCCCC-----hHH-------HHHHHHHHH-HcCC---ccceeeeeccCCCCCCCCCCCCHHHHHHHH
Q 014399 155 LHGRHNIRHNAW-GGAWD-----SNN-------ARDFLKYTI-SMGY---QIDSWEYGNELSGRTSIGASVDAELYGKDL 217 (425)
Q Consensus 155 ~~~~~~~~~~~~-~~~w~-----~~~-------A~~~~~y~~-~~~~---~v~~wElGNEpd~~~~~~~~~t~~~Ya~d~ 217 (425)
.... .+.+.. .-.|. +.. ..++++... ..|. .-.+||++||||+...+ ..-+.++|.+-|
T Consensus 107 ~p~~--~~~~~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~~f~-~~~~~~ey~~ly 183 (486)
T PF01229_consen 107 MPMA--LASGYQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLKDFW-WDGTPEEYFELY 183 (486)
T ss_dssp B-GG--GBSS--EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTSTTTS-GGG-HHHHHHHH
T ss_pred chhh--hcCCCCccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCccccc-CCCCHHHHHHHH
Confidence 3321 111000 00111 122 233333322 2221 13478999999985222 223678899999
Q ss_pred HHHHHHHHHHhcCCCCCCeEeCCCCCC-CHHHHHHHHhhhC--CCccceEEEeecCCCCCCCh-hhhhhccChhhhhhHH
Q 014399 218 INLKNIINELYKNSSSKPTILAPGGFF-DQEWYAKFLQVSG--SNVVNGVTHHIYNLGPGVDP-NLVSKILNPQRLSRVS 293 (425)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~gp~~~~-~~~w~~~~l~~~g--~~~id~vs~H~Y~~~~g~~~-~~~~~ll~~~~l~~~~ 293 (425)
+..+++||+++|. .++.||+... ...|+.+|++-.. .-.+|++|+|.|+.+...+. ......+. ..++..
T Consensus 184 ~~~~~~iK~~~p~----~~vGGp~~~~~~~~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~~~~~~~~~~~--~~~~~~ 257 (486)
T PF01229_consen 184 DATARAIKAVDPE----LKVGGPAFAWAYDEWCEDFLEFCKGNNCPLDFISFHSYGTDSAEDINENMYERIE--DSRRLF 257 (486)
T ss_dssp HHHHHHHHHH-TT----SEEEEEEEETT-THHHHHHHHHHHHCT---SEEEEEEE-BESESE-SS-EEEEB----HHHHH
T ss_pred HHHHHHHHHhCCC----CcccCccccccHHHHHHHHHHHHhcCCCCCCEEEEEecccccccccchhHHhhhh--hHHHHH
Confidence 9999999999876 5899995321 3467777765321 12489999999986421110 00011111 122233
Q ss_pred HHHHHHHHHHH-HhCCCCceEEeccccCcCCCCCCcchHHHHHHHHHHHhhccccccceEE--------E-----Eeecc
Q 014399 294 ETFGNLKQTIE-KHGPWASAWVGESGGAYNSGGRHVSNTFVNSFWYLDQLGMSSKYNTKVY--------C-----RQTLV 359 (425)
Q Consensus 294 ~~~~~~~~~~~-~~~~~~p~wl~Etns~~~~G~~~vs~tf~aalw~lD~l~~~A~~g~~~v--------~-----~q~~~ 359 (425)
.++..+++++. +..|.+|+.++|+|+... ....+-|+...|-..+..++......++.+ | ....+
T Consensus 258 ~~~~~~~~~~~~e~~p~~~~~~tE~n~~~~-~~~~~~dt~~~aA~i~k~lL~~~~~~l~~~sywt~sD~Fee~~~~~~pf 336 (486)
T PF01229_consen 258 PELKETRPIINDEADPNLPLYITEWNASIS-PRNPQHDTCFKAAYIAKNLLSNDGAFLDSFSYWTFSDRFEENGTPRKPF 336 (486)
T ss_dssp HHHHHHHHHHHTSSSTT--EEEEEEES-SS-TT-GGGGSHHHHHHHHH-HHHHGGGT-SEEEES-SBS---TTSS-SSSS
T ss_pred HHHHHHHHHHhhccCCCCceeecccccccC-CCcchhccccchhhHHHHHHHhhhhhhhhhhccchhhhhhccCCCCCce
Confidence 44555545554 445789999999998763 333445554333334443322211111211 1 11122
Q ss_pred CccccCCCCCCCCCCcchHHHHHHHHhcCCceeE
Q 014399 360 GGNYGLLNATTFIPNPDYYSALLWHRLMGKGVLS 393 (425)
Q Consensus 360 gg~Y~l~~~~~~~p~P~Yy~~ll~~~~~G~~vl~ 393 (425)
.|.+||+... ..+.|.||+..|.+++ |.+++.
T Consensus 337 ~ggfGLlt~~-gI~KPa~~A~~~L~~l-g~~~~~ 368 (486)
T PF01229_consen 337 HGGFGLLTKL-GIPKPAYYAFQLLNKL-GDRLVA 368 (486)
T ss_dssp SS-S-SEECC-CEE-HHHHHHHHHTT---SEEEE
T ss_pred ecchhhhhcc-CCCchHHHHHHHHHhh-CceeEe
Confidence 3556787766 5689999999999988 665543
No 4
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=98.89 E-value=1.6e-08 Score=95.14 Aligned_cols=106 Identities=16% Similarity=0.171 Sum_probs=76.9
Q ss_pred CCccceeeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCeEeCCCCCC-------CHHHHHHHHhhhC-
Q 014399 186 GYQIDSWEYGNELSGRTSIGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGFF-------DQEWYAKFLQVSG- 257 (425)
Q Consensus 186 ~~~v~~wElGNEpd~~~~~~~~~t~~~Ya~d~~~~~~~~~~~~~~~~~~~~~~gp~~~~-------~~~w~~~~l~~~g- 257 (425)
+...++++.-||||... +..++|+++++.|+++.+.++. .+.++++|+... ..+|+++|++...
T Consensus 63 ~~~~~~ll~fNEPD~~~--qsn~~p~~aa~~w~~~~~~~~~------~~~~l~sPa~~~~~~~~~~g~~Wl~~F~~~~~~ 134 (239)
T PF11790_consen 63 HPGSKHLLGFNEPDLPG--QSNMSPEEAAALWKQYMNPLRS------PGVKLGSPAVAFTNGGTPGGLDWLSQFLSACAR 134 (239)
T ss_pred ccCccceeeecCCCCCC--CCCCCHHHHHHHHHHHHhHhhc------CCcEEECCeecccCCCCCCccHHHHHHHHhccc
Confidence 56688999999999863 5679999999999999888773 347999998732 2479999998865
Q ss_pred CCccceEEEeecCCCCCCChhhhhhccChhhhhhHHHHHHHHHHHHHHhCCCCceEEeccccC
Q 014399 258 SNVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGA 320 (425)
Q Consensus 258 ~~~id~vs~H~Y~~~~g~~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~~~~~p~wl~Etns~ 320 (425)
.-.+|++++|.|.. +. +.+... +..+.++++ +||||||.+-.
T Consensus 135 ~~~~D~iavH~Y~~----~~------------~~~~~~---i~~~~~~~~--kPIWITEf~~~ 176 (239)
T PF11790_consen 135 GCRVDFIAVHWYGG----DA------------DDFKDY---IDDLHNRYG--KPIWITEFGCW 176 (239)
T ss_pred CCCccEEEEecCCc----CH------------HHHHHH---HHHHHHHhC--CCEEEEeeccc
Confidence 23699999999921 11 111222 233333445 99999999854
No 5
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.53 E-value=1.3e-06 Score=83.56 Aligned_cols=219 Identities=16% Similarity=0.076 Sum_probs=111.7
Q ss_pred CcHHHHHHHHHcCCceEecCCcccceeeeecCCCCCCCCCCcCCCCCccCccccccchhhHHHHHHHHhhcCCEEEEEee
Q 014399 74 SHPLLANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLN 153 (425)
Q Consensus 74 ~~~~l~~l~~~l~p~~LRiGG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~i~~~~~d~~~~f~~~~g~~~i~~lN 153 (425)
........++++|--.||+.=. |..-..+.+ +...+ .-...+++++++.|++.|..+|+.+.
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~------~~~~~~~~~--------~~~~~----~~~~~~ld~~v~~a~~~gi~vild~h 83 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVG------WEAYQEPNP--------GYNYD----ETYLARLDRIVDAAQAYGIYVILDLH 83 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEE------STSTSTTST--------TTSBT----HHHHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CHHHHHHHHHHCCCCEEEeCCC------HHHhcCCCC--------Ccccc----HHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 4566778889999999997332 211100000 00000 11235679999999999999999887
Q ss_pred cCCCCcccCCCCCCCCCChHHHHHH----HHH-HHH--cCCccceeeeeccCCCCCCC--CCCCCHHHHHHHHHHHHHHH
Q 014399 154 ALHGRHNIRHNAWGGAWDSNNARDF----LKY-TIS--MGYQIDSWEYGNELSGRTSI--GASVDAELYGKDLINLKNII 224 (425)
Q Consensus 154 ~~~~~~~~~~~~~~~~w~~~~A~~~----~~y-~~~--~~~~v~~wElGNEpd~~~~~--~~~~t~~~Ya~d~~~~~~~~ 224 (425)
...+= ...+ ..........++ ++. +.. ....+.+|||.|||+..... ....++..|.+-+++..++|
T Consensus 84 ~~~~w-~~~~---~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~I 159 (281)
T PF00150_consen 84 NAPGW-ANGG---DGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAI 159 (281)
T ss_dssp ESTTC-SSST---STTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHH
T ss_pred cCccc-cccc---cccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHH
Confidence 53110 0000 011122222222 222 222 23457799999999986211 01225577888889999999
Q ss_pred HHHhcCCCCCCeEeCCCC-CCCHHH-HHHHHhhhCCCccceEEEeecCCCCCCChhhhhhccChhhhhhHHHHHHHHHHH
Q 014399 225 NELYKNSSSKPTILAPGG-FFDQEW-YAKFLQVSGSNVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQT 302 (425)
Q Consensus 225 ~~~~~~~~~~~~~~gp~~-~~~~~w-~~~~l~~~g~~~id~vs~H~Y~~~~g~~~~~~~~ll~~~~l~~~~~~~~~~~~~ 302 (425)
|++.|+. +.+++... ...... ... +..... ..+.+++|.|.... ...................++.....
T Consensus 160 r~~~~~~---~i~~~~~~~~~~~~~~~~~-~P~~~~-~~~~~~~H~Y~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (281)
T PF00150_consen 160 RAADPNH---LIIVGGGGWGADPDGAAAD-NPNDAD-NNDVYSFHFYDPYD---FSDQWNPGNWGDASALESSFRAALNW 231 (281)
T ss_dssp HHTTSSS---EEEEEEHHHHTBHHHHHHH-STTTTT-TSEEEEEEEETTTC---HHTTTSTCSHHHHHHHHHHHHHHHHH
T ss_pred HhcCCcc---eeecCCCccccccchhhhc-Cccccc-CceeEEeeEeCCCC---cCCccccccchhhhHHHHHHHHHHHH
Confidence 9988762 33444321 111111 111 111112 47899999998431 10000000011111122333444333
Q ss_pred HHHhCCCCceEEeccccCcCCC
Q 014399 303 IEKHGPWASAWVGESGGAYNSG 324 (425)
Q Consensus 303 ~~~~~~~~p~wl~Etns~~~~G 324 (425)
+.+ .++|+|+||++.....+
T Consensus 232 ~~~--~g~pv~~gE~G~~~~~~ 251 (281)
T PF00150_consen 232 AKK--NGKPVVVGEFGWSNNDG 251 (281)
T ss_dssp HHH--TTSEEEEEEEESSTTTS
T ss_pred HHH--cCCeEEEeCcCCcCCCC
Confidence 333 35899999999875444
No 6
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=98.46 E-value=4.1e-07 Score=83.71 Aligned_cols=96 Identities=13% Similarity=0.215 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHH------cCCccceeeeeccCCCCC--C---CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCeEeCC
Q 014399 172 SNNARDFLKYTIS------MGYQIDSWEYGNELSGRT--S---IGASVDAELYGKDLINLKNIINELYKNSSSKPTILAP 240 (425)
Q Consensus 172 ~~~A~~~~~y~~~------~~~~v~~wElGNEpd~~~--~---~~~~~t~~~Ya~d~~~~~~~~~~~~~~~~~~~~~~gp 240 (425)
+.-..+|+.+.+. .+..|++|.|.|||+++. + .+...+.+++.+...+++++||+++|+ .+++||
T Consensus 103 ~~y~~ewV~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~TH~dVHP~~~t~~El~~r~i~~AkaiK~~DP~----a~v~GP 178 (239)
T PF12891_consen 103 PVYMDEWVNYLVNKYGNASTNGGVKYYSLDNEPDLWHSTHRDVHPEPVTYDELRDRSIEYAKAIKAADPD----AKVFGP 178 (239)
T ss_dssp EEEHHHHHHHHHHHH--TTSTTS--EEEESS-GGGHHHHTTTT--S---HHHHHHHHHHHHHHHHHH-TT----SEEEEE
T ss_pred HhHHHHHHHHHHHHHhccccCCCceEEEecCchHhhcccccccCCCCCCHHHHHHHHHHHHHHHHhhCCC----CeEeec
Confidence 3447788888653 256699999999999974 2 367789999999999999999999987 589998
Q ss_pred CCC---------CC------------HHHHHHHHhh-------hCCCccceEEEeecCC
Q 014399 241 GGF---------FD------------QEWYAKFLQV-------SGSNVVNGVTHHIYNL 271 (425)
Q Consensus 241 ~~~---------~~------------~~w~~~~l~~-------~g~~~id~vs~H~Y~~ 271 (425)
... .+ ..|+.-||++ .|...+|++.+|+||.
T Consensus 179 ~~wgw~~y~~~~~d~~~~~d~~~~g~~~fl~wyL~qm~~~~~~~G~RLLDvlDiH~YPq 237 (239)
T PF12891_consen 179 VEWGWCGYFSSADDAPGWPDRAAHGNYDFLPWYLDQMKEAEKSTGKRLLDVLDIHYYPQ 237 (239)
T ss_dssp EE-SHHHHHHTTTHHTTHHHHHHTTT-SHHHHHHHHHHHHHHHHTS-S-SEEEEEE--S
T ss_pred hhhccceeeccCccccccccccccCCcchHHHHHHHHHHhhhhcCceeeeeeeeeecCC
Confidence 631 11 1255555552 3544799999999985
No 7
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=98.37 E-value=1.2e-05 Score=82.97 Aligned_cols=224 Identities=18% Similarity=0.185 Sum_probs=123.2
Q ss_pred HHHHHHHH---HHcCCccceeeeeccCCCC-----CCCCCCCCHHHHHHHHHH-HHHHHHHHhcCCCCCCeEeCCCCC--
Q 014399 175 ARDFLKYT---ISMGYQIDSWEYGNELSGR-----TSIGASVDAELYGKDLIN-LKNIINELYKNSSSKPTILAPGGF-- 243 (425)
Q Consensus 175 A~~~~~y~---~~~~~~v~~wElGNEpd~~-----~~~~~~~t~~~Ya~d~~~-~~~~~~~~~~~~~~~~~~~gp~~~-- 243 (425)
|.-+++|. +++|.+|.+.-+.|||+.. ......|+|++-++-.+. |.-+|++..+. .+.+|++-+-.
T Consensus 207 A~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g--~d~kI~~~D~n~~ 284 (496)
T PF02055_consen 207 ADYFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLG--KDVKILIYDHNRD 284 (496)
T ss_dssp HHHHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT---TTSEEEEEEEEGG
T ss_pred HHHHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCC--CceEEEEEecCCc
Confidence 55555554 3579999999999999963 122457898776433333 66677664321 24677765422
Q ss_pred CCHHHHHHHHhhhC-CCccceEEEeecCCCCCCChhhhhhccChhhhhhHHHHHHHHHHHHHHhCCCCceEEeccccCcC
Q 014399 244 FDQEWYAKFLQVSG-SNVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGAYN 322 (425)
Q Consensus 244 ~~~~w~~~~l~~~g-~~~id~vs~H~Y~~~~g~~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~~~~~p~wl~Etns~~~ 322 (425)
..++|...+|+... .+.||.+.+|.|... +. +..| .. +.+.-|++.+|.||......
T Consensus 285 ~~~~~~~~il~d~~A~~yv~GiA~HwY~g~----~~-------~~~l----------~~-~h~~~P~k~l~~TE~~~g~~ 342 (496)
T PF02055_consen 285 NLPDYADTILNDPEAAKYVDGIAFHWYGGD----PS-------PQAL----------DQ-VHNKFPDKFLLFTEACCGSW 342 (496)
T ss_dssp GTTHHHHHHHTSHHHHTTEEEEEEEETTCS-----H-------CHHH----------HH-HHHHSTTSEEEEEEEESS-S
T ss_pred ccchhhhhhhcChhhHhheeEEEEECCCCC----ch-------hhHH----------HH-HHHHCCCcEEEeeccccCCC
Confidence 23578888886321 236999999999631 10 1111 11 22346899999999743221
Q ss_pred CCCCCc-chHHHHHHHHHHHhhccccccceEEEEeecc----Ccc-----c--c--CCCC--CCCCCCcchHHHHHHHHh
Q 014399 323 SGGRHV-SNTFVNSFWYLDQLGMSSKYNTKVYCRQTLV----GGN-----Y--G--LLNA--TTFIPNPDYYSALLWHRL 386 (425)
Q Consensus 323 ~G~~~v-s~tf~aalw~lD~l~~~A~~g~~~v~~q~~~----gg~-----Y--~--l~~~--~~~~p~P~Yy~~ll~~~~ 386 (425)
.....+ ...+..+..+...+...-+++...++...+. ||. + + .++. +.+..+|.||.+-=|+++
T Consensus 343 ~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~gw~~WNl~LD~~GGP~~~~n~~d~~iivd~~~~~~~~~p~yY~~gHfSKF 422 (496)
T PF02055_consen 343 NWDTSVDLGSWDRAERYAHDIIGDLNNWVSGWIDWNLALDENGGPNWVGNFCDAPIIVDSDTGEFYKQPEYYAMGHFSKF 422 (496)
T ss_dssp TTS-SS-TTHHHHHHHHHHHHHHHHHTTEEEEEEEESEBETTS---TT---B--SEEEEGGGTEEEE-HHHHHHHHHHTT
T ss_pred CcccccccccHHHHHHHHHHHHHHHHhhceeeeeeeeecCCCCCCcccCCCCCceeEEEcCCCeEEEcHHHHHHHHHhcc
Confidence 111111 1234444444444433345566554433321 321 1 0 1222 224458999999999999
Q ss_pred c--CCceeEeeeCCC-CceEEEEEEecCCCcEEEEEEeCc
Q 014399 387 M--GKGVLSVATDGS-SSLRSYAHCSKERVSVVFISISLL 423 (425)
Q Consensus 387 ~--G~~vl~~~~~~~-~~~~~YA~~~~~~g~l~l~liN~~ 423 (425)
+ |...+.++.... ..|.+-|+-.. +|+++|+++|..
T Consensus 423 V~PGa~RI~st~~~~~~~l~~vAF~nP-DGs~vvVv~N~~ 461 (496)
T PF02055_consen 423 VRPGAVRIGSTSSSSDSGLEAVAFLNP-DGSIVVVVLNRG 461 (496)
T ss_dssp S-TT-EEEEEEESSSTTTEEEEEEEET-TSEEEEEEEE-S
T ss_pred cCCCCEEEEeeccCCCCceeEEEEECC-CCCEEEEEEcCC
Confidence 9 666666655433 36888887766 699999999975
No 8
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=98.22 E-value=3e-05 Score=75.90 Aligned_cols=203 Identities=17% Similarity=0.158 Sum_probs=108.1
Q ss_pred CCCCcHHHHHHHHHcCCceEecCCcccceeeeecCCCCCCCCCCcCCCCCccCccccccchhhHHHHHHHHhhcCCEEEE
Q 014399 71 LDLSHPLLANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSF 150 (425)
Q Consensus 71 ~~~~~~~l~~l~~~l~p~~LRiGG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~i~~~~~d~~~~f~~~~g~~~i~ 150 (425)
.+....++..++|.-|.-.||+ + .|..... . +..+..+--++.+=+++.|.++++
T Consensus 22 ~~G~~~d~~~ilk~~G~N~vRl------R-vwv~P~~--------------~----g~~~~~~~~~~akrak~~Gm~vll 76 (332)
T PF07745_consen 22 ENGQEKDLFQILKDHGVNAVRL------R-VWVNPYD--------------G----GYNDLEDVIALAKRAKAAGMKVLL 76 (332)
T ss_dssp TTSSB--HHHHHHHTT--EEEE------E-E-SS-TT--------------T----TTTSHHHHHHHHHHHHHTT-EEEE
T ss_pred CCCCCCCHHHHHHhcCCCeEEE------E-eccCCcc--------------c----ccCCHHHHHHHHHHHHHCCCeEEE
Confidence 3455677889999988877764 1 2332110 0 123344446667777888999998
Q ss_pred EeecCC-----CCcccCCCCCCCCCChH----HHHHHHHH-------HHHcCCccceeeeeccCCCC--CCCCCCCCHHH
Q 014399 151 GLNALH-----GRHNIRHNAWGGAWDSN----NARDFLKY-------TISMGYQIDSWEYGNELSGR--TSIGASVDAEL 212 (425)
Q Consensus 151 ~lN~~~-----~~~~~~~~~~~~~w~~~----~A~~~~~y-------~~~~~~~v~~wElGNEpd~~--~~~~~~~t~~~ 212 (425)
.+-+.. +.+.+| .+|... -+.++-+| .+..|.....+|||||.+.. +..+..-+...
T Consensus 77 dfHYSD~WaDPg~Q~~P-----~aW~~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~ 151 (332)
T PF07745_consen 77 DFHYSDFWADPGKQNKP-----AAWANLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDN 151 (332)
T ss_dssp EE-SSSS--BTTB-B-------TTCTSSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHH
T ss_pred eecccCCCCCCCCCCCC-----ccCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHH
Confidence 887531 111111 345432 22333333 24578889999999998764 23344566788
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCeEeCCCCCCCHHHHHHHHhhhCCCccceEEEeecCCCCCCChhhhhhccChhhhhhH
Q 014399 213 YGKDLINLKNIINELYKNSSSKPTILAPGGFFDQEWYAKFLQVSGSNVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRV 292 (425)
Q Consensus 213 Ya~d~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~w~~~~l~~~g~~~id~vs~H~Y~~~~g~~~~~~~~ll~~~~l~~~ 292 (425)
+++-+..-.+++|++.|+++...-+..|+......|+-+-|.+.|. ..|.+.+++||.-.+ .++
T Consensus 152 ~a~ll~ag~~AVr~~~p~~kV~lH~~~~~~~~~~~~~f~~l~~~g~-d~DviGlSyYP~w~~-------------~l~-- 215 (332)
T PF07745_consen 152 LAKLLNAGIKAVREVDPNIKVMLHLANGGDNDLYRWFFDNLKAAGV-DFDVIGLSYYPFWHG-------------TLE-- 215 (332)
T ss_dssp HHHHHHHHHHHHHTHSSTSEEEEEES-TTSHHHHHHHHHHHHHTTG-G-SEEEEEE-STTST--------------HH--
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEECCCCchHHHHHHHHHHHhcCC-CcceEEEecCCCCcc-------------hHH--
Confidence 8888888889999988764221122233321122444444445554 499999999996422 122
Q ss_pred HHHHHHHHHHHHHhCCCCceEEeccccCcC
Q 014399 293 SETFGNLKQTIEKHGPWASAWVGESGGAYN 322 (425)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~p~wl~Etns~~~ 322 (425)
.....++.+.++++ ||+++.||+..+.
T Consensus 216 -~l~~~l~~l~~ry~--K~V~V~Et~yp~t 242 (332)
T PF07745_consen 216 -DLKNNLNDLASRYG--KPVMVVETGYPWT 242 (332)
T ss_dssp -HHHHHHHHHHHHHT---EEEEEEE---SB
T ss_pred -HHHHHHHHHHHHhC--CeeEEEecccccc
Confidence 22234555666774 9999999986654
No 9
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=97.86 E-value=2.2e-05 Score=61.93 Aligned_cols=75 Identities=21% Similarity=0.165 Sum_probs=42.4
Q ss_pred CCccceeeeeccCCCCCC--C---CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCeEeCCCCCCCHHHHHHHHhhhC-CC
Q 014399 186 GYQIDSWEYGNELSGRTS--I---GASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGFFDQEWYAKFLQVSG-SN 259 (425)
Q Consensus 186 ~~~v~~wElGNEpd~~~~--~---~~~~t~~~Ya~d~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~w~~~~l~~~g-~~ 259 (425)
..+|.+|||+||+++... . ......+.|.+-+++..++||+++|+. +..+|-... +.. -+++.. +
T Consensus 8 ~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~---pvt~g~~~~-~~~----~~~~~~~~- 78 (88)
T PF12876_consen 8 DPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQ---PVTSGFWGG-DWE----DLEQLQAE- 78 (88)
T ss_dssp GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS----EE--B--S--TT----HHHHS--T-
T ss_pred CCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCC---cEEeecccC-CHH----HHHHhchh-
Confidence 346899999999544322 1 223456889999999999999999873 333332221 111 133333 4
Q ss_pred ccceEEEeec
Q 014399 260 VVNGVTHHIY 269 (425)
Q Consensus 260 ~id~vs~H~Y 269 (425)
.+|++|+|.|
T Consensus 79 ~~DvisfH~Y 88 (88)
T PF12876_consen 79 NLDVISFHPY 88 (88)
T ss_dssp T-SSEEB-EE
T ss_pred cCCEEeeecC
Confidence 5999999998
No 10
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=97.55 E-value=0.0015 Score=63.13 Aligned_cols=209 Identities=12% Similarity=0.081 Sum_probs=111.0
Q ss_pred HHHHHHHHcCCccceeeeeccCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCeEeCCCCCC-CHHHHHHHHh
Q 014399 177 DFLKYTISMGYQIDSWEYGNELSGRT-SIGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGFF-DQEWYAKFLQ 254 (425)
Q Consensus 177 ~~~~y~~~~~~~v~~wElGNEpd~~~-~~~~~~t~~~Ya~d~~~~~~~~~~~~~~~~~~~~~~gp~~~~-~~~w~~~~l~ 254 (425)
+.+.|.+..|.++++..+=||||.-+ .-++.|+|++-.+-++++..-+.+ ..+++-|+... .+.|-+..|+
T Consensus 157 ~fv~~m~~nGvnlyalSVQNEPd~~p~~d~~~wtpQe~~rF~~qyl~si~~-------~~rV~~pes~~~~~~~~dp~ln 229 (433)
T COG5520 157 DFVLEMKNNGVNLYALSVQNEPDYAPTYDWCWWTPQEELRFMRQYLASINA-------EMRVIIPESFKDLPNMSDPILN 229 (433)
T ss_pred HHHHHHHhCCCceeEEeeccCCcccCCCCcccccHHHHHHHHHHhhhhhcc-------ccEEecchhccccccccccccc
Confidence 33444567899999999999999864 336789998876655555544433 36888888753 3355555554
Q ss_pred hhC-CCccceEEEeecCCCCCCChhhhhhccChhhhhhHHHHHHHHHHHHHHhCCCCceEEeccccCcCCCCCCcchHHH
Q 014399 255 VSG-SNVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGAYNSGGRHVSNTFV 333 (425)
Q Consensus 255 ~~g-~~~id~vs~H~Y~~~~g~~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~~~~~p~wl~Etns~~~~G~~~vs~tf~ 333 (425)
.-. -..||.+.+|.|... ... -| +...+....+|.+|++|.-.... -++--|+
T Consensus 230 Dp~a~a~~~ilg~H~Ygg~--v~~-------~p-------------~~lak~~~~gKdlwmte~y~~es--d~~s~dr-- 283 (433)
T COG5520 230 DPKALANMDILGTHLYGGQ--VSD-------QP-------------YPLAKQKPAGKDLWMTECYPPES--DPNSADR-- 283 (433)
T ss_pred CHhHhcccceeEeeecccc--ccc-------ch-------------hhHhhCCCcCCceEEeecccCCC--CCCcchH--
Confidence 211 125999999999521 100 01 01111223479999999643221 1111232
Q ss_pred HHHHHHHHhhcccccc-ceEEEEeeccCccccCCCCCCCCCCcchHHHHHHHHhcCCceeEeeeCCCCc--eEEEEEEec
Q 014399 334 NSFWYLDQLGMSSKYN-TKVYCRQTLVGGNYGLLNATTFIPNPDYYSALLWHRLMGKGVLSVATDGSSS--LRSYAHCSK 410 (425)
Q Consensus 334 aalw~lD~l~~~A~~g-~~~v~~q~~~gg~Y~l~~~~~~~p~P~Yy~~ll~~~~~G~~vl~~~~~~~~~--~~~YA~~~~ 410 (425)
.++|....+......| .+.+.-..+- .+|+....... -.-+-|.+--++.+++..-..++.+.+.+ +.+.| |.+
T Consensus 284 ~~~~~~~hi~~gm~~gg~~ayv~W~i~-~~~~~~~~~gg-~~k~~y~ma~fskf~q~gy~rldat~sp~~nvyvsa-yvg 360 (433)
T COG5520 284 EALHVALHIHIGMTEGGFQAYVWWNIR-LDYGGGPNHGG-NSKRGYCMAHFSKFVQNGYVRLDATKSPYGNVYVSA-YVG 360 (433)
T ss_pred HHHHHHHHHHhhccccCccEEEEEEEe-eccCCCcCCCc-ccccceeEeeeeeeccCCceEEecccCccceEEEEE-Eec
Confidence 5677776665543333 4443322221 23322222101 11234444556666666633332222322 22222 233
Q ss_pred CCCcEEEEEEeC
Q 014399 411 ERVSVVFISISL 422 (425)
Q Consensus 411 ~~g~l~l~liN~ 422 (425)
+++++|+.||+
T Consensus 361 -~nkvvivaink 371 (433)
T COG5520 361 -PNKVVIVAINK 371 (433)
T ss_pred -CCcEEEEeecc
Confidence 47788888887
No 11
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.26 E-value=0.049 Score=51.69 Aligned_cols=93 Identities=11% Similarity=-0.025 Sum_probs=52.4
Q ss_pred ccchhhHHHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCCCh-----HHHHHHHHHH----HHcCCccceeeeeccC
Q 014399 128 CLHMQRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDS-----NNARDFLKYT----ISMGYQIDSWEYGNEL 198 (425)
Q Consensus 128 ~i~~~~~d~~~~f~~~~g~~~i~~lN~~~~~~~~~~~~~~~~w~~-----~~A~~~~~y~----~~~~~~v~~wElGNEp 198 (425)
.+..+..|+++++|++.|.++-...=+ -.. ....|.. +....+.+|. ...+.++..|++.|||
T Consensus 12 ~~n~~~~D~~~~~a~~~gi~v~gH~l~-W~~-------~~P~W~~~~~~~~~~~~~~~~i~~v~~ry~g~i~~wdV~NE~ 83 (254)
T smart00633 12 QFNFSGADAIVNFAKENGIKVRGHTLV-WHS-------QTPDWVFNLSKETLLARLENHIKTVVGRYKGKIYAWDVVNEA 83 (254)
T ss_pred ccChHHHHHHHHHHHHCCCEEEEEEEe-ecc-------cCCHhhhcCCHHHHHHHHHHHHHHHHHHhCCcceEEEEeeec
Confidence 344566799999999999998543211 110 1233532 2234455554 2456669999999999
Q ss_pred CCCCCC--CC-CCC---HHHHHHHHHHHHHHHHHHhcCC
Q 014399 199 SGRTSI--GA-SVD---AELYGKDLINLKNIINELYKNS 231 (425)
Q Consensus 199 d~~~~~--~~-~~t---~~~Ya~d~~~~~~~~~~~~~~~ 231 (425)
....+. .. .|. +.+| .....++.++++|++
T Consensus 84 ~~~~~~~~~~~~w~~~~G~~~---i~~af~~ar~~~P~a 119 (254)
T smart00633 84 LHDNGSGLRRSVWYQILGEDY---IEKAFRYAREADPDA 119 (254)
T ss_pred ccCCCcccccchHHHhcChHH---HHHHHHHHHHhCCCC
Confidence 865211 00 110 1244 334556667877764
No 12
>smart00813 Alpha-L-AF_C Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides.
Probab=97.17 E-value=0.0021 Score=58.18 Aligned_cols=54 Identities=19% Similarity=0.202 Sum_probs=42.8
Q ss_pred CCCCcchHHHHHHHHhcCCceeEeeeCCC---------CceEEEEEEecCCCcEEEEEEeCcc
Q 014399 371 FIPNPDYYSALLWHRLMGKGVLSVATDGS---------SSLRSYAHCSKERVSVVFISISLLI 424 (425)
Q Consensus 371 ~~p~P~Yy~~ll~~~~~G~~vl~~~~~~~---------~~~~~YA~~~~~~g~l~l~liN~~~ 424 (425)
...+|.||+..||++++|.+++++.+.+. +.|.+.|.+..+.+.++|.+||.++
T Consensus 64 ~~~t~~Yyv~~lfs~~~g~~~l~~~v~~~~~~~~~~~~~~ld~sA~~~~~~~~~~v~vvN~~~ 126 (189)
T smart00813 64 AWRTTTYYVFQLFSKHQGGTVLPVTISSPTYDGEDSDVPALDASASKDEDGGSLTVKVVNRSP 126 (189)
T ss_pred EEECCcCHHHHHhhhhCCceEEEEEeeCCccccCcccCCcEEEEEEEeCCCCEEEEEEEeCCC
Confidence 45689999999999999999999887533 4577777766534579999999863
No 13
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.04 E-value=0.13 Score=48.96 Aligned_cols=213 Identities=13% Similarity=0.079 Sum_probs=115.6
Q ss_pred CCCcHHHHHHHHHcCCceEecCCcccceeeeecCCCCCCCCCCcCCCCCccCccccccchhhHHHHHHHHhhcCCEEEEE
Q 014399 72 DLSHPLLANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFG 151 (425)
Q Consensus 72 ~~~~~~l~~l~~~l~p~~LRiGG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~i~~~~~d~~~~f~~~~g~~~i~~ 151 (425)
+...++..+++|.-|.-++|+ -.|.+.... ..+.+|- +.-....--++..=|+..|.++++.
T Consensus 62 ng~~qD~~~iLK~~GvNyvRl-------RvwndP~ds---------ngn~ygg--GnnD~~k~ieiakRAk~~GmKVl~d 123 (403)
T COG3867 62 NGVRQDALQILKNHGVNYVRL-------RVWNDPYDS---------NGNGYGG--GNNDLKKAIEIAKRAKNLGMKVLLD 123 (403)
T ss_pred CChHHHHHHHHHHcCcCeEEE-------EEecCCccC---------CCCccCC--CcchHHHHHHHHHHHHhcCcEEEee
Confidence 355778888999999988885 235432110 0111111 1111111134555566779999987
Q ss_pred eecCCCCcccCCCCCCCCCChHH----HHHHHHHH-------HHcCCccceeeeeccCCCC--CCCCCCCCHHHHHHHHH
Q 014399 152 LNALHGRHNIRHNAWGGAWDSNN----ARDFLKYT-------ISMGYQIDSWEYGNELSGR--TSIGASVDAELYGKDLI 218 (425)
Q Consensus 152 lN~~~~~~~~~~~~~~~~w~~~~----A~~~~~y~-------~~~~~~v~~wElGNEpd~~--~~~~~~~t~~~Ya~d~~ 218 (425)
.-+..-=.++....--.+|.-.+ -+++-+|. ++.|....--|+|||.++. |..|..-+-+..++.+.
T Consensus 124 FHYSDfwaDPakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n 203 (403)
T COG3867 124 FHYSDFWADPAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLN 203 (403)
T ss_pred ccchhhccChhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHH
Confidence 65421100000000012242111 11222232 3567788889999999875 23344335566777777
Q ss_pred HHHHHHHHHhcCCCCCCeEeCCCCCCCHHHHHHHHhhhCCCccceEEEeecCCCCCCChhhhhhccChhhhhhHHHHHHH
Q 014399 219 NLKNIINELYKNSSSKPTILAPGGFFDQEWYAKFLQVSGSNVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGN 298 (425)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~gp~~~~~~~w~~~~l~~~g~~~id~vs~H~Y~~~~g~~~~~~~~ll~~~~l~~~~~~~~~ 298 (425)
+-.+++|++.|+++.-.-+.-|.......|+-+=|.+.+- ..|.+...+||.-.| ++.+| -..
T Consensus 204 ~g~~avrev~p~ikv~lHla~g~~n~~y~~~fd~ltk~nv-dfDVig~SyYpyWhg----tl~nL------------~~n 266 (403)
T COG3867 204 AGIRAVREVSPTIKVALHLAEGENNSLYRWIFDELTKRNV-DFDVIGSSYYPYWHG----TLNNL------------TTN 266 (403)
T ss_pred HHhhhhhhcCCCceEEEEecCCCCCchhhHHHHHHHHcCC-CceEEeeeccccccC----cHHHH------------HhH
Confidence 8888888887775322233344443334565544445544 389999999986422 11211 123
Q ss_pred HHHHHHHhCCCCceEEeccccCc
Q 014399 299 LKQTIEKHGPWASAWVGESGGAY 321 (425)
Q Consensus 299 ~~~~~~~~~~~~p~wl~Etns~~ 321 (425)
+..+.++|. |.+.+-||...|
T Consensus 267 l~dia~rY~--K~VmV~Etay~y 287 (403)
T COG3867 267 LNDIASRYH--KDVMVVETAYTY 287 (403)
T ss_pred HHHHHHHhc--CeEEEEEeccee
Confidence 555666665 789999987754
No 14
>PRK10150 beta-D-glucuronidase; Provisional
Probab=96.84 E-value=0.089 Score=56.43 Aligned_cols=67 Identities=15% Similarity=0.174 Sum_probs=38.3
Q ss_pred ccceeeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCeEeCCCCCCCHHHHHHHHhhhCCCccceEEEe
Q 014399 188 QIDSWEYGNELSGRTSIGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGFFDQEWYAKFLQVSGSNVVNGVTHH 267 (425)
Q Consensus 188 ~v~~wElGNEpd~~~~~~~~~t~~~Ya~d~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~w~~~~l~~~g~~~id~vs~H 267 (425)
.|..|.+|||+... ......-++++.+++|+.+|+ ++...+-...... .. +.... .+|++++|
T Consensus 408 SIi~Ws~gNE~~~~--------~~~~~~~~~~l~~~~k~~Dpt---R~vt~~~~~~~~~--~~---~~~~~-~~Dv~~~N 470 (604)
T PRK10150 408 SVVMWSIANEPASR--------EQGAREYFAPLAELTRKLDPT---RPVTCVNVMFATP--DT---DTVSD-LVDVLCLN 470 (604)
T ss_pred eEEEEeeccCCCcc--------chhHHHHHHHHHHHHHhhCCC---CceEEEecccCCc--cc---ccccC-cccEEEEc
Confidence 37799999998642 112233457888899999876 2333221100000 00 11112 58999999
Q ss_pred ecCC
Q 014399 268 IYNL 271 (425)
Q Consensus 268 ~Y~~ 271 (425)
.|+.
T Consensus 471 ~Y~~ 474 (604)
T PRK10150 471 RYYG 474 (604)
T ss_pred ccce
Confidence 8874
No 15
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=96.79 E-value=0.011 Score=58.41 Aligned_cols=181 Identities=17% Similarity=0.166 Sum_probs=103.5
Q ss_pred cceeeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCeEeCCCCCCCHHHHHHHHhhhCCCccceEEEee
Q 014399 189 IDSWEYGNELSGRTSIGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGFFDQEWYAKFLQVSGSNVVNGVTHHI 268 (425)
Q Consensus 189 v~~wElGNEpd~~~~~~~~~t~~~Ya~d~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~w~~~~l~~~g~~~id~vs~H~ 268 (425)
...+++-|||+.. ..-.+|-+.+... .++.+|. +.+.| ++.++....|++.+ + .||+|+.|.
T Consensus 105 kw~f~~~~~pn~~------ad~~eyfk~y~~~---a~~~~p~----i~vg~---~w~~e~l~~~~k~~-d-~idfvt~~a 166 (428)
T COG3664 105 KWPFYSPNEPNLL------ADKQEYFKLYDAT---ARQRAPS----IQVGG---SWNTERLHEFLKKA-D-EIDFVTELA 166 (428)
T ss_pred ecceeecCCCCcc------cchHHHHHHHHhh---hhccCcc----eeecc---ccCcHHHhhhhhcc-C-cccceeecc
Confidence 5578999999986 2334443222222 2344444 23333 24455566777633 4 499999999
Q ss_pred cCCCC-CCC-hhhhhhccChhhhhhHHHHHHHHHHHHHHhCCCCceEEeccccCcCCCCCCcchHHHHHHHHHHHhhccc
Q 014399 269 YNLGP-GVD-PNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGAYNSGGRHVSNTFVNSFWYLDQLGMSS 346 (425)
Q Consensus 269 Y~~~~-g~~-~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~~~~~p~wl~Etns~~~~G~~~vs~tf~aalw~lD~l~~~A 346 (425)
|.... +.+ +...+..+.+. .......+.++..+++++-++|+.+.|+|..+ ++..-+-++|.+|--.+..|..+.
T Consensus 167 ~~~~av~~~~~~~~~~~l~~~--~~~l~~~r~~~d~i~~~~~~~pl~~~~wntlt-~~~~~~n~sy~raa~i~~~Lr~~g 243 (428)
T COG3664 167 NSVDAVDFSTPGAEEVKLSEL--KRTLEDLRGLKDLIQHHSLGLPLLLTNWNTLT-GPREPTNGSYVRAAYIMRLLREAG 243 (428)
T ss_pred cccccccccCCCchhhhhhhh--hhhhhHHHHHHHHHHhccCCCcceeecccccC-CCccccCceeehHHHHHHHHHhcC
Confidence 97542 111 11111112222 23455667788888888889999999999987 444455677877655555555432
Q ss_pred cccc--------eEE---EEee--ccCccccCCCCCCCCCCcchHHHHHHHHhcCCceeE
Q 014399 347 KYNT--------KVY---CRQT--LVGGNYGLLNATTFIPNPDYYSALLWHRLMGKGVLS 393 (425)
Q Consensus 347 ~~g~--------~~v---~~q~--~~gg~Y~l~~~~~~~p~P~Yy~~ll~~~~~G~~vl~ 393 (425)
..-. ... +.+. ++ +..+++... ..-+|.|+..+++.++ |..++.
T Consensus 244 ~~v~a~~yW~~sdl~e~~g~~~~~~~-~gfel~~~~-~~rrpa~~~~l~~n~L-g~~~l~ 300 (428)
T COG3664 244 SPVDAFGYWTNSDLHEEHGPPEAPFV-GGFELFAPY-GGRRPAWMAALFFNRL-GRTLLS 300 (428)
T ss_pred ChhhhhhhhhcccccccCCCcccccc-cceeeeccc-ccchhHHHHHHHHHHH-HHHhhh
Confidence 2111 011 1111 11 222344333 3458999999999999 766554
No 16
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=96.48 E-value=0.038 Score=54.81 Aligned_cols=167 Identities=14% Similarity=0.034 Sum_probs=77.0
Q ss_pred HHHHHhhcCCEEEEEeecC-----CCCcccCCCC-----CCCCCChHHHHHHHHHH---HHcCCccceeeeeccCCCCC-
Q 014399 137 LNQLFNRTRAIVSFGLNAL-----HGRHNIRHNA-----WGGAWDSNNARDFLKYT---ISMGYQIDSWEYGNELSGRT- 202 (425)
Q Consensus 137 ~~~f~~~~g~~~i~~lN~~-----~~~~~~~~~~-----~~~~w~~~~A~~~~~y~---~~~~~~v~~wElGNEpd~~~- 202 (425)
|++-|++.|++.+....-. ........+. -...|-..-|.-|++++ ++.|.++.+.+.=|||+..+
T Consensus 109 fL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~~W~ 188 (384)
T PF14587_consen 109 FLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQWNWA 188 (384)
T ss_dssp HHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS-GG
T ss_pred HHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCCCCC
Confidence 7888999999877755211 0000000000 00111112244444443 46789999999999999764
Q ss_pred ---CCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCeEeCCCCC-C------------CHHHHHHHHhhhCC-------C
Q 014399 203 ---SIGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGF-F------------DQEWYAKFLQVSGS-------N 259 (425)
Q Consensus 203 ---~~~~~~t~~~Ya~d~~~~~~~~~~~~~~~~~~~~~~gp~~~-~------------~~~w~~~~l~~~g~-------~ 259 (425)
+-|+.+++++-++-.+.+++.|++.-.+ .+|..++.. . ...-+..|+..... .
T Consensus 189 ~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~----t~I~~~Ea~~~~~l~~~~~~~~~r~~~i~~ff~~~s~~yi~~l~~ 264 (384)
T PF14587_consen 189 GGSQEGCHFTNEEQADVIRALDKALKKRGLS----TKISACEAGDWEYLYKTDKNDWGRGNQIEAFFNPDSSTYIGDLPN 264 (384)
T ss_dssp --SS-B----HHHHHHHHHHHHHHHHHHT-S-----EEEEEEESSGGGGS---S-TTS---HHHHHHSTTSTT--TT-TT
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHHhcCCC----ceEEecchhhHHHHhhccCCchhhhhhHHhhcCCCchhhhhcccc
Confidence 3367899988888888888888876332 345544321 0 01234677765432 2
Q ss_pred ccceEEEeecCCCCCCChhhhhhccChhhhhhHHHHHHHHHHHHHHhCCCCceEEeccccCc
Q 014399 260 VVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGAY 321 (425)
Q Consensus 260 ~id~vs~H~Y~~~~g~~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~~~~~p~wl~Etns~~ 321 (425)
.-+.++-|.|... + + .+.+...-+.+.+.++++.|++++|.+|+....
T Consensus 265 v~~~i~~HsYwt~-~--~-----------~~~l~~~R~~~~~~~~~~~~~~~~wqtE~~il~ 312 (384)
T PF14587_consen 265 VPNIISGHSYWTD-S--P-----------WDDLRDIRKQLADKLDKYSPGLKYWQTEYCILG 312 (384)
T ss_dssp EEEEEEE--TT-S-S--S-----------HHHHHHHHHHHHHHHHTTSS--EEEE----S--
T ss_pred chhheeecccccC-C--C-----------HHHHHHHHHHHHHHHHhhCcCCceeeeeeeecc
Confidence 3467899999854 1 1 112233334566777788899999999986543
No 17
>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3.2.1.55 from EC). This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3FW6_A 3II1_A 3S2C_K 1QW9_A 1PZ3_B 1PZ2_B 1QW8_A 3UG4_A 3UG3_A 4ATW_B ....
Probab=96.37 E-value=0.012 Score=52.63 Aligned_cols=88 Identities=19% Similarity=0.243 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHhhccccccceEE--EEeeccC--ccc----cCCC--CCCCCCCcchHHHHHHHHhcCCceeEeeeCCC
Q 014399 330 NTFVNSFWYLDQLGMSSKYNTKVY--CRQTLVG--GNY----GLLN--ATTFIPNPDYYSALLWHRLMGKGVLSVATDGS 399 (425)
Q Consensus 330 ~tf~aalw~lD~l~~~A~~g~~~v--~~q~~~g--g~Y----~l~~--~~~~~p~P~Yy~~ll~~~~~G~~vl~~~~~~~ 399 (425)
.++.+||..+-+|..+-|++-.|. +.-.++. +.+ .+|. .+....+|.||+..||+++.|.++|
T Consensus 18 ~~l~~AL~~A~~l~~~eRnsD~V~ma~~A~l~~~~~~~~w~~~li~~~~~~~~~tpsY~v~~lf~~~~g~~~l------- 90 (177)
T PF06964_consen 18 YTLRDALAEAAFLNGFERNSDVVKMACYAPLVNNIGDTQWTPDLITFDGDQVFGTPSYYVQKLFSNHRGDTVL------- 90 (177)
T ss_dssp -BHHHHHHHHHHHHHHHHTTTTEEEEEEE-SBSTTS------SEEEETTSEEEESHHHHHHHHHHHCTTSEEE-------
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEeEEccchhhccccccccccceEEcCCCCEEECchHHHHHHHHhcCCCeEe-------
Confidence 455666666666666666664332 2223332 111 2322 2234579999999999999999999
Q ss_pred CceEEEEEEecCCCcEEEEEEeCcc
Q 014399 400 SSLRSYAHCSKERVSVVFISISLLI 424 (425)
Q Consensus 400 ~~~~~YA~~~~~~g~l~l~liN~~~ 424 (425)
+.+.+.|.+..+++.+.|.+||.++
T Consensus 91 ~~l~~~As~d~~~~~l~v~vVN~~~ 115 (177)
T PF06964_consen 91 PPLDVSASRDEDGGELYVKVVNRSS 115 (177)
T ss_dssp ESEEEEEEEETTTTEEEEEEEE-SS
T ss_pred ccEEEEEEEECCCCEEEEEEEECCC
Confidence 4577777776644579999999864
No 18
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=95.82 E-value=0.19 Score=48.79 Aligned_cols=82 Identities=18% Similarity=0.206 Sum_probs=43.5
Q ss_pred HHHHHHHhhcCCEEEEEeecC-CCCcccCC----CCCCCCCC---hHHHHHHHHHHHHcCCccceeeeeccCCCCCCCCC
Q 014399 135 DELNQLFNRTRAIVSFGLNAL-HGRHNIRH----NAWGGAWD---SNNARDFLKYTISMGYQIDSWEYGNELSGRTSIGA 206 (425)
Q Consensus 135 d~~~~f~~~~g~~~i~~lN~~-~~~~~~~~----~~~~~~w~---~~~A~~~~~y~~~~~~~v~~wElGNEpd~~~~~~~ 206 (425)
++|+++|.+.|.-++--+... .+...... ......|. ..+.+++++.-+ .+..|..|.+|||+
T Consensus 62 ~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-NHPSIi~W~~gNE~-------- 132 (298)
T PF02836_consen 62 PRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYDADDPEFRENAEQELREMVRRDR-NHPSIIMWSLGNES-------- 132 (298)
T ss_dssp HHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCTTTSGGHHHHHHHHHHHHHHHHT-T-TTEEEEEEEESS--------
T ss_pred HHHHHHHhhcCCEEEEeccccccCccccCCccccCCCCHHHHHHHHHHHHHHHHcCc-CcCchheeecCccC--------
Confidence 789999999999888766541 11000000 00001111 122333333222 23347799999997
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcC
Q 014399 207 SVDAELYGKDLINLKNIINELYKN 230 (425)
Q Consensus 207 ~~t~~~Ya~d~~~~~~~~~~~~~~ 230 (425)
.+...++++.+.+|+.+|+
T Consensus 133 -----~~~~~~~~l~~~~k~~Dpt 151 (298)
T PF02836_consen 133 -----DYREFLKELYDLVKKLDPT 151 (298)
T ss_dssp -----HHHHHHHHHHHHHHHH-TT
T ss_pred -----ccccchhHHHHHHHhcCCC
Confidence 3445567888889999887
No 19
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=94.72 E-value=0.43 Score=46.70 Aligned_cols=193 Identities=19% Similarity=0.238 Sum_probs=91.0
Q ss_pred CcHHHHHHHHHcCCceEecCCcccceeeeecCCCCCCCCCCcCCCCCccCccccccchhhHHHHHHHHhhcCCEEEEEee
Q 014399 74 SHPLLANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLN 153 (425)
Q Consensus 74 ~~~~l~~l~~~l~p~~LRiGG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~i~~~~~d~~~~f~~~~g~~~i~~lN 153 (425)
+-..+++++|..+-..+|+ |++. .+.++-...+|+++++++.
T Consensus 14 ~p~~vv~l~ks~~i~~vri---------~d~~-----------------------------~~iL~a~a~S~i~v~v~vp 55 (310)
T PF00332_consen 14 SPCKVVSLLKSNGITKVRI---------YDAD-----------------------------PSILRAFAGSGIEVMVGVP 55 (310)
T ss_dssp -HHHHHHHHHHTT--EEEE---------SS-------------------------------HHHHHHHTTS--EEEEEE-
T ss_pred CHHHHHHHHHhcccccEEe---------ecCc-----------------------------HHHHHHHhcCCceeeeccC
Confidence 4667888999888777774 3321 2333334458999999986
Q ss_pred cCCCCcccCCCCCCCCCChHHHHHHHHHHHH---cCCccceeeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 014399 154 ALHGRHNIRHNAWGGAWDSNNARDFLKYTIS---MGYQIDSWEYGNELSGRTSIGASVDAELYGKDLINLKNIINELYKN 230 (425)
Q Consensus 154 ~~~~~~~~~~~~~~~~w~~~~A~~~~~y~~~---~~~~v~~wElGNEpd~~~~~~~~~t~~~Ya~d~~~~~~~~~~~~~~ 230 (425)
-.. ... ..-+...|..|++--.. ..-++++.-+|||.-.. ........-.+.+++++++.-=
T Consensus 56 N~~----l~~----la~~~~~A~~Wv~~nv~~~~~~~~i~~i~VGnEv~~~------~~~~~lvpAm~ni~~aL~~~~L- 120 (310)
T PF00332_consen 56 NED----LAS----LASSQSAAGSWVRTNVLPYLPAVNIRYIAVGNEVLTG------TDNAYLVPAMQNIHNALTAAGL- 120 (310)
T ss_dssp GGG----HHH----HHHHHHHHHHHHHHHTCTCTTTSEEEEEEEEES-TCC------SGGGGHHHHHHHHHHHHHHTT--
T ss_pred hHH----HHH----hccCHHHHhhhhhhcccccCcccceeeeecccccccC------ccceeeccHHHHHHHHHHhcCc-
Confidence 110 000 00023456667764221 12359999999997754 1111456667778888876521
Q ss_pred CCCCCeEeC------------CCC-CCCHHH------HHHHHhhhCCCccceEEEeecCC-----CCCCCh---hhh---
Q 014399 231 SSSKPTILA------------PGG-FFDQEW------YAKFLQVSGSNVVNGVTHHIYNL-----GPGVDP---NLV--- 280 (425)
Q Consensus 231 ~~~~~~~~g------------p~~-~~~~~w------~~~~l~~~g~~~id~vs~H~Y~~-----~~g~~~---~~~--- 280 (425)
..++++.- |+. .+...+ +.+||+..+.. +.+..||. ++..-+ +..
T Consensus 121 -~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~~~~~~~l~fL~~t~sp----f~vN~yPyfa~~~~~~~~~l~yAlf~~~ 195 (310)
T PF00332_consen 121 -SDQIKVSTPHSMDVLSNSFPPSAGVFRSDIASVMDPLLKFLDGTNSP----FMVNVYPYFAYQNNPQNISLDYALFQPN 195 (310)
T ss_dssp -TTTSEEEEEEEGGGEEE-SSGGG-EESHHHHHHHHHHHHHHHHHT------EEEE--HHHHHHHSTTTS-HHHHTT-SS
T ss_pred -CCcceeccccccccccccCCCccCcccccchhhhhHHHHHhhccCCC----ceeccchhhhccCCcccCCccccccccc
Confidence 12455542 221 123333 45778777632 33333321 111100 000
Q ss_pred hhccCh--hhhhhHHHHHHHHHHHHHHhC-CCCceEEeccccCcCCC
Q 014399 281 SKILNP--QRLSRVSETFGNLKQTIEKHG-PWASAWVGESGGAYNSG 324 (425)
Q Consensus 281 ~~ll~~--~~l~~~~~~~~~~~~~~~~~~-~~~p~wl~Etns~~~~G 324 (425)
....++ .+-.-+..+++.+..++.+.+ +++++|+||||..+.|+
T Consensus 196 ~~~~D~~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ETGWPs~G~ 242 (310)
T PF00332_consen 196 SGVVDGGLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVGETGWPSAGD 242 (310)
T ss_dssp S-SEETTEEESSHHHHHHHHHHHHHHTTT-TT--EEEEEE---SSSS
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHHhCCCCceeEEeccccccCCC
Confidence 000011 111223455677777766554 57899999999988554
No 20
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=93.10 E-value=5.7 Score=38.55 Aligned_cols=128 Identities=16% Similarity=0.181 Sum_probs=54.7
Q ss_pred HHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCCChHHHHHHHHHHH--HcCCccceeeeeccCCCCCCCCCCCCHHH
Q 014399 135 DELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTI--SMGYQIDSWEYGNELSGRTSIGASVDAEL 212 (425)
Q Consensus 135 d~~~~f~~~~g~~~i~~lN~~~~~~~~~~~~~~~~w~~~~A~~~~~y~~--~~~~~v~~wElGNEpd~~~~~~~~~t~~~ 212 (425)
|++|+.+..+|.=+|+.||.-... +...++...|+...-....+-.. ++-.|+.+|=+|||.-... .+.....
T Consensus 82 d~CM~~~~~aGIYvi~Dl~~p~~s--I~r~~P~~sw~~~l~~~~~~vid~fa~Y~N~LgFf~GNEVin~~---~~t~aap 156 (314)
T PF03198_consen 82 DECMSAFADAGIYVILDLNTPNGS--INRSDPAPSWNTDLLDRYFAVIDAFAKYDNTLGFFAGNEVINDA---SNTNAAP 156 (314)
T ss_dssp HHHHHHHHHTT-EEEEES-BTTBS----TTS------HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-ST---T-GGGHH
T ss_pred HHHHHHHHhCCCEEEEecCCCCcc--ccCCCCcCCCCHHHHHHHHHHHHHhccCCceEEEEecceeecCC---CCcccHH
Confidence 899999999999999999875322 22222233676543322222111 2334677999999986531 1223444
Q ss_pred HHHH-HHHHHHHHHHHhcCCCCCCeEeCCCCCC---CHHHHHHHHhhhCC-CccceEEEeecCC
Q 014399 213 YGKD-LINLKNIINELYKNSSSKPTILAPGGFF---DQEWYAKFLQVSGS-NVVNGVTHHIYNL 271 (425)
Q Consensus 213 Ya~d-~~~~~~~~~~~~~~~~~~~~~~gp~~~~---~~~w~~~~l~~~g~-~~id~vs~H~Y~~ 271 (425)
|.+. .|..++.|++. ..+..-+|-+.+. ...-+.++|.=... ..+|++.+-.|..
T Consensus 157 ~vKAavRD~K~Yi~~~----~~R~IPVGYsaaD~~~~r~~~a~Yl~Cg~~~~~iDf~g~N~Y~W 216 (314)
T PF03198_consen 157 YVKAAVRDMKAYIKSK----GYRSIPVGYSAADDAEIRQDLANYLNCGDDDERIDFFGLNSYEW 216 (314)
T ss_dssp HHHHHHHHHHHHHHHS----SS----EEEEE---TTTHHHHHHHTTBTT-----S-EEEEE---
T ss_pred HHHHHHHHHHHHHHhc----CCCCCceeEEccCChhHHHHHHHHhcCCCcccccceeeecccee
Confidence 4322 12222233331 1223344533321 12345667642221 2599999999964
No 21
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=92.59 E-value=3.2 Score=39.22 Aligned_cols=154 Identities=14% Similarity=0.152 Sum_probs=80.2
Q ss_pred HHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCCChHHHHHHHHHHHHcCC-ccceeeeeccCCCCCCCCCCCCHHHH
Q 014399 135 DELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTISMGY-QIDSWEYGNELSGRTSIGASVDAELY 213 (425)
Q Consensus 135 d~~~~f~~~~g~~~i~~lN~~~~~~~~~~~~~~~~w~~~~A~~~~~y~~~~~~-~v~~wElGNEpd~~~~~~~~~t~~~Y 213 (425)
+.+...+.+.|.++++|+=.... ...+.+. ..+..|-...+. .|..+-+|||-=.. ...++.+.
T Consensus 90 e~v~pAa~~~g~kv~lGiw~tdd----------~~~~~~~-til~ay~~~~~~d~v~~v~VGnEal~r----~~~tasql 154 (305)
T COG5309 90 ENVLPAAEASGFKVFLGIWPTDD----------IHDAVEK-TILSAYLPYNGWDDVTTVTVGNEALNR----NDLTASQL 154 (305)
T ss_pred hhhHHHHHhcCceEEEEEeeccc----------hhhhHHH-HHHHHHhccCCCCceEEEEechhhhhc----CCCCHHHH
Confidence 44455667788999999854221 1111111 112223222233 48899999996433 35789999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCeEeCCCCCCCHHH--HHHHHhhhCCCccceE--EEeecCCCCCCChhhhhhccChhhh
Q 014399 214 GKDLINLKNIINELYKNSSSKPTILAPGGFFDQEW--YAKFLQVSGSNVVNGV--THHIYNLGPGVDPNLVSKILNPQRL 289 (425)
Q Consensus 214 a~d~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~w--~~~~l~~~g~~~id~v--s~H~Y~~~~g~~~~~~~~ll~~~~l 289 (425)
.+...+.|.++++..-+ + +++-.+.. ..| +.++.+ ..|++ ..|.|..+.. .++... .++
T Consensus 155 ~~~I~~vrsav~~agy~---g-pV~T~dsw--~~~~~np~l~~-----~SDfia~N~~aYwd~~~-----~a~~~~-~f~ 217 (305)
T COG5309 155 IEYIDDVRSAVKEAGYD---G-PVTTVDSW--NVVINNPELCQ-----ASDFIAANAHAYWDGQT-----VANAAG-TFL 217 (305)
T ss_pred HHHHHHHHHHHHhcCCC---C-ceeecccc--eeeeCChHHhh-----hhhhhhcccchhccccc-----hhhhhh-HHH
Confidence 88888999988864211 1 12211111 001 122222 13444 4577765321 111111 122
Q ss_pred hhHHHHHHHHHHHHHHhCCCCceEEeccccCcCCCCC
Q 014399 290 SRVSETFGNLKQTIEKHGPWASAWVGESGGAYNSGGR 326 (425)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~p~wl~Etns~~~~G~~ 326 (425)
.+|++.++. ..+.++++|++|||....|-..
T Consensus 218 ---~~q~e~vqs---a~g~~k~~~v~EtGWPS~G~~~ 248 (305)
T COG5309 218 ---LEQLERVQS---ACGTKKTVWVTETGWPSDGRTY 248 (305)
T ss_pred ---HHHHHHHHH---hcCCCccEEEeeccCCCCCCcc
Confidence 234444443 3566699999999987755333
No 22
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=80.76 E-value=46 Score=33.18 Aligned_cols=159 Identities=16% Similarity=0.185 Sum_probs=78.9
Q ss_pred HHHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCCChHHHHHHHHHHH-----------HcCCc-cc----eeeeecc
Q 014399 134 WDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTI-----------SMGYQ-ID----SWEYGNE 197 (425)
Q Consensus 134 ~d~~~~f~~~~g~~~i~~lN~~~~~~~~~~~~~~~~w~~~~A~~~~~y~~-----------~~~~~-v~----~wElGNE 197 (425)
+.+=++-|+..|.|+++.|--+.|.+... +.+.|..++.|.- ..|.. |+ -+|.|||
T Consensus 92 i~~di~~CQS~GiKVlLSLGG~~GnYs~~--------~d~dA~~fA~~LWn~Fg~G~~S~RPfg~AVvDGfDF~IE~g~~ 163 (568)
T KOG4701|consen 92 IETDIQVCQSNGIKVLLSLGGYNGNYSLN--------NDDDATNFAFQLWNIFGSGEDSYRPFGKAVVDGFDFEIEKGTN 163 (568)
T ss_pred hhhHHHHHHhcCeEEEEeccCcccceeec--------cchhHHHHHHHHHHHhcCCccccCcccchhccceeeeeecCCc
Confidence 45567789999999999986555543332 3456666666531 01111 21 2333333
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCeEeC-CCCCCCHHHHHHHHhhhCCCccceEEEeecCCCCCC-
Q 014399 198 LSGRTSIGASVDAELYGKDLINLKNIINELYKNSSSKPTILA-PGGFFDQEWYAKFLQVSGSNVVNGVTHHIYNLGPGV- 275 (425)
Q Consensus 198 pd~~~~~~~~~t~~~Ya~d~~~~~~~~~~~~~~~~~~~~~~g-p~~~~~~~w~~~~l~~~g~~~id~vs~H~Y~~~~g~- 275 (425)
..|- .+++-++..+.....+.-+.| |.-.+...-+-..|+.. .+|++.+++|...++.
T Consensus 164 -------------~~ys----aLA~~L~~~Fa~~~r~yYLsaAPQCP~PD~~~G~aL~~~---~fDf~~IQFYNN~~CS~ 223 (568)
T KOG4701|consen 164 -------------TAYS----ALAKRLLEIFASDPRRYYLSAAPQCPVPDHTLGKALSEN---SFDFLSIQFYNNSTCSG 223 (568)
T ss_pred -------------chHH----HHHHHHHHHHccCCceEEeccCCCCCCCchhhhhhhhcc---ccceEEEEeecCCCccc
Confidence 3333 334444333322112233333 44332334445556433 5999999999753321
Q ss_pred ChhhhhhccChhhhhhHHHHHHHHHHHHHH--hCCCCceEEeccccCcCCCCCCcchHH
Q 014399 276 DPNLVSKILNPQRLSRVSETFGNLKQTIEK--HGPWASAWVGESGGAYNSGGRHVSNTF 332 (425)
Q Consensus 276 ~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~--~~~~~p~wl~Etns~~~~G~~~vs~tf 332 (425)
+....+ . .+ +...++.+. +..+..+.||--++...-|..-++++-
T Consensus 224 SsG~~Q-~----~f-------DsW~~ya~~~a~nKn~~lFLGLPg~~~AAGSGYIsp~~ 270 (568)
T KOG4701|consen 224 SSGSRQ-S----TF-------DAWVEYAEDSAYNKNTSLFLGLPGHQNAAGSGYISPKN 270 (568)
T ss_pred ccCccc-c----cH-------HHHHHHHhhhcccccceEEeeccCCcccccCCccCchH
Confidence 111001 1 11 222222222 334567889887776655555566653
No 23
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=80.35 E-value=20 Score=31.61 Aligned_cols=90 Identities=13% Similarity=0.166 Sum_probs=55.7
Q ss_pred hhHHHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCCChHH----HHHHHHHH-H--HcCCccceeeeeccCCCCCCC
Q 014399 132 QRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNN----ARDFLKYT-I--SMGYQIDSWEYGNELSGRTSI 204 (425)
Q Consensus 132 ~~~d~~~~f~~~~g~~~i~~lN~~~~~~~~~~~~~~~~w~~~~----A~~~~~y~-~--~~~~~v~~wElGNEpd~~~~~ 204 (425)
+..+.+++.|++.|.++++||++... ++. ..+++. ...+++.. . .+...+++|=|-+|++..
T Consensus 65 d~l~~~L~~A~~~Gmkv~~Gl~~~~~-------~w~-~~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~~~--- 133 (166)
T PF14488_consen 65 DLLEMILDAADKYGMKVFVGLYFDPD-------YWD-QGDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEIDDY--- 133 (166)
T ss_pred cHHHHHHHHHHHcCCEEEEeCCCCch-------hhh-ccCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccCCc---
Confidence 44689999999999999999987422 111 112221 11222221 1 122359999999999976
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCeEeCC
Q 014399 205 GASVDAELYGKDLINLKNIINELYKNSSSKPTILAP 240 (425)
Q Consensus 205 ~~~~t~~~Ya~d~~~~~~~~~~~~~~~~~~~~~~gp 240 (425)
.+.. .+.++.+.+.++++.+ ..|..+.|
T Consensus 134 --~~~~---~~~~~~l~~~lk~~s~---~~Pv~ISp 161 (166)
T PF14488_consen 134 --NWNA---PERFALLGKYLKQISP---GKPVMISP 161 (166)
T ss_pred --ccch---HHHHHHHHHHHHHhCC---CCCeEEec
Confidence 2333 4456777788888755 24666665
No 24
>TIGR03356 BGL beta-galactosidase.
Probab=78.94 E-value=5.1 Score=41.05 Aligned_cols=100 Identities=14% Similarity=0.127 Sum_probs=64.8
Q ss_pred HHHHHHHHcCCceEecCCcccceeeeecCCCCCCCCCCcCCCCCccCccccccc---hhhHHHHHHHHhhcCCEEEEEee
Q 014399 77 LLANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLH---MQRWDELNQLFNRTRAIVSFGLN 153 (425)
Q Consensus 77 ~l~~l~~~l~p~~LRiGG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~i~---~~~~d~~~~f~~~~g~~~i~~lN 153 (425)
.=+.+++.+|-..+|++=.++-. .+.. + +.+. -...+++++-|++.|.+||++|.
T Consensus 58 eDi~l~~~~G~~~~R~si~Wsri---~p~g---~----------------~~~n~~~~~~y~~~i~~l~~~gi~pivtL~ 115 (427)
T TIGR03356 58 EDVALMKELGVDAYRFSIAWPRI---FPEG---T----------------GPVNPKGLDFYDRLVDELLEAGIEPFVTLY 115 (427)
T ss_pred HHHHHHHHcCCCeEEcccchhhc---ccCC---C----------------CCcCHHHHHHHHHHHHHHHHcCCeeEEeec
Confidence 34578889999999987654431 1110 0 0111 24568999999999999999995
Q ss_pred cCCCCcccCCCCCCCCC-ChHHHHHHHHHHH----HcCCccceeeeeccCCCC
Q 014399 154 ALHGRHNIRHNAWGGAW-DSNNARDFLKYTI----SMGYQIDSWEYGNELSGR 201 (425)
Q Consensus 154 ~~~~~~~~~~~~~~~~w-~~~~A~~~~~y~~----~~~~~v~~wElGNEpd~~ 201 (425)
=-.-+...- ..+.| +++....+++||+ ..+..|++|+.=|||+..
T Consensus 116 Hfd~P~~l~---~~gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~ 165 (427)
T TIGR03356 116 HWDLPQALE---DRGGWLNRDTAEWFAEYAAVVAERLGDRVKHWITLNEPWCS 165 (427)
T ss_pred cCCccHHHH---hcCCCCChHHHHHHHHHHHHHHHHhCCcCCEEEEecCccee
Confidence 221111000 02446 4456778888874 467789999999999965
No 25
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=76.54 E-value=13 Score=37.28 Aligned_cols=56 Identities=16% Similarity=0.144 Sum_probs=33.2
Q ss_pred HHHHHHHcCCceEecCCcccceeeeecCCCCCCCCCCcCCCCCccCccccccchhhHHHHHHHHhhcCCEEEEEeecC
Q 014399 78 LANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNAL 155 (425)
Q Consensus 78 l~~l~~~l~p~~LRiGG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~i~~~~~d~~~~f~~~~g~~~i~~lN~~ 155 (425)
-+.++|++|--++|+|=- .|..= + | +.+ .+.-+.+|.+++.+++.|.++++++.-.
T Consensus 15 d~~~m~~~G~n~vri~~~-----~W~~l-E--P-------~eG-------~ydF~~lD~~l~~a~~~Gi~viL~~~~~ 70 (374)
T PF02449_consen 15 DLRLMKEAGFNTVRIGEF-----SWSWL-E--P-------EEG-------QYDFSWLDRVLDLAAKHGIKVILGTPTA 70 (374)
T ss_dssp HHHHHHHHT-SEEEE-CC-----EHHHH----S-------BTT-------B---HHHHHHHHHHHCTT-EEEEEECTT
T ss_pred HHHHHHHcCCCEEEEEEe-----chhhc-c--C-------CCC-------eeecHHHHHHHHHHHhccCeEEEEeccc
Confidence 346677889889998643 23210 1 1 112 2333567999999999999999988643
No 26
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=74.19 E-value=17 Score=36.45 Aligned_cols=77 Identities=14% Similarity=0.119 Sum_probs=30.6
Q ss_pred HHHHhCCCCceEEeccccCcCC-CCC--CcchHHHHHHHHHHHhhccccccceEE-E---EeeccC---ccccCCCCCCC
Q 014399 302 TIEKHGPWASAWVGESGGAYNS-GGR--HVSNTFVNSFWYLDQLGMSSKYNTKVY-C---RQTLVG---GNYGLLNATTF 371 (425)
Q Consensus 302 ~~~~~~~~~p~wl~Etns~~~~-G~~--~vs~tf~aalw~lD~l~~~A~~g~~~v-~---~q~~~g---g~Y~l~~~~~~ 371 (425)
+++....++|+|+.|+.+...+ +.. ...+... .+|..-.+. +|.+.+ + |+...| ..+++++.+..
T Consensus 281 l~R~~~~~kpf~v~E~~~g~~~~~~~~~~~~pg~~-~~~~~~~~A----~Ga~~i~~~~wr~~~~g~E~~~~g~~~~dg~ 355 (374)
T PF02449_consen 281 LMRSLAKGKPFWVMEQQPGPVNWRPYNRPPRPGEL-RLWSWQAIA----HGADGILFWQWRQSRFGAEQFHGGLVDHDGR 355 (374)
T ss_dssp HHHHHTTT--EEEEEE--S--SSSSS-----TTHH-HHHHHHHHH----TT-S-EEEC-SB--SSSTTTTS--SB-TTS-
T ss_pred HHHhhcCCCceEeecCCCCCCCCccCCCCCCCCHH-HHHHHHHHH----HhCCeeEeeeccCCCCCchhhhcccCCccCC
Confidence 3333457899999998664211 111 1111222 345444333 355433 2 555555 45689998844
Q ss_pred CCCcchHHHHHH
Q 014399 372 IPNPDYYSALLW 383 (425)
Q Consensus 372 ~p~P~Yy~~ll~ 383 (425)
.+++.|.-..=+
T Consensus 356 ~~~~~~~e~~~~ 367 (374)
T PF02449_consen 356 EPTRRYREVAQL 367 (374)
T ss_dssp -B-HHHHHHHHH
T ss_pred CCCcHHHHHHHH
Confidence 777777655433
No 27
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=73.87 E-value=34 Score=36.84 Aligned_cols=153 Identities=18% Similarity=0.166 Sum_probs=65.6
Q ss_pred HHcCCccceeeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCeEeCCCCCCCHHHHHHHHhhh-CCCcc
Q 014399 183 ISMGYQIDSWEYGNELSGRTSIGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGFFDQEWYAKFLQVS-GSNVV 261 (425)
Q Consensus 183 ~~~~~~v~~wElGNEpd~~~~~~~~~t~~~Ya~d~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~w~~~~l~~~-g~~~i 261 (425)
+.+|..|.|..+.||=. ++ .+| .+.+|+.+++.. -.++||++.+.... .+...++... -...|
T Consensus 168 ~~~gl~idYvg~~NEr~--------~~-~~~---ik~lr~~l~~~g---y~~vkiva~D~~~~-~~~~~m~~D~~l~~av 231 (669)
T PF02057_consen 168 KTHGLDIDYVGIWNERG--------FD-VNY---IKWLRKALNSNG---YNKVKIVAADNNWE-SISDDMLSDPELRNAV 231 (669)
T ss_dssp HHH-----EE-S-TTS------------HHH---HHHHHHHHHHTT----TT-EEEEEEE-ST-THHHHHHH-HHHHHH-
T ss_pred HHhCCCceEechhhccC--------CC-hhH---HHHHHHHHhhcc---ccceEEEEeCCCcc-chhhhhhcCHHHHhcc
Confidence 45789999999999943 22 355 456777777642 14579999875532 2333332211 11148
Q ss_pred ceEEEeecCCCCCCChhhhhhccChhhhhhHHHHHHHHHHHHHHhCCCCceEEeccccCcCCCCCCcchHHHHHHHHHHH
Q 014399 262 NGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGAYNSGGRHVSNTFVNSFWYLDQ 341 (425)
Q Consensus 262 d~vs~H~Y~~~~g~~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~~~~~p~wl~Etns~~~~G~~~vs~tf~aalw~lD~ 341 (425)
|++..| |+.. +. .. . .++. +||+|-.|-.+.++ +..+++-| +..
T Consensus 232 dvig~H-Y~~~---~~-------~~--------~-------a~~~--~K~lW~SE~~s~~~-------~~~g~g~~-ar~ 275 (669)
T PF02057_consen 232 DVIGYH-YPGT---YS-------SK--------N-------AKLT--GKPLWSSEDYSTFN-------YNVGAGCW-ARI 275 (669)
T ss_dssp -EEEEE-S-TT-------------H--------H-------HHHH--T-EEEEEEEE-S-T-------THHHHHHH-HHH
T ss_pred cEeccc-cCCC---Cc-------HH--------H-------HHHh--CCCeEEcCCccccc-------CcCchHHH-HHH
Confidence 999999 5421 11 00 0 0112 59999999766432 22233333 222
Q ss_pred hhc-cccccceEEEEeeccCccccCCCC---------CC----CCCCcchHHHHHHHHhc
Q 014399 342 LGM-SSKYNTKVYCRQTLVGGNYGLLNA---------TT----FIPNPDYYSALLWHRLM 387 (425)
Q Consensus 342 l~~-~A~~g~~~v~~q~~~gg~Y~l~~~---------~~----~~p~P~Yy~~ll~~~~~ 387 (425)
|-+ ..+-....++.|.+|++.|.-+.. ++ ....+..|++.=+.++.
T Consensus 276 ln~~yv~g~mT~~I~w~lVasyYp~lpy~~~gL~~A~ePWSG~Y~v~~~iWv~AHtTQFt 335 (669)
T PF02057_consen 276 LNRNYVNGRMTAYINWPLVASYYPGLPYSRKGLMTANEPWSGHYEVDSPIWVTAHTTQFT 335 (669)
T ss_dssp HHHHHHHH--SEEEEE-SEE-S-TTSTTTT-SSCE---TTT---B--HHHHHHHHHHTT-
T ss_pred HHhhhhccceEEEEeehhhhhhcCCCCCCCccceEecCCcccceEecceeeeeeehhccC
Confidence 211 112223456778899877732221 11 23466789888888885
No 28
>KOG2566 consensus Beta-glucocerebrosidase [Carbohydrate transport and metabolism]
Probab=73.74 E-value=1e+02 Score=30.93 Aligned_cols=51 Identities=14% Similarity=0.212 Sum_probs=35.6
Q ss_pred CCcchHHHHHHHHhcCCceeEe--eeCCCCceEEEEEEecCCCcEEEEEEeCcc
Q 014399 373 PNPDYYSALLWHRLMGKGVLSV--ATDGSSSLRSYAHCSKERVSVVFISISLLI 424 (425)
Q Consensus 373 p~P~Yy~~ll~~~~~G~~vl~~--~~~~~~~~~~YA~~~~~~g~l~l~liN~~~ 424 (425)
-.|-||++--|++++-+....| ....+..|.+-|.-.. +|+.++++.|+.+
T Consensus 434 KQPmfya~~hFSkFl~pGs~Rv~~~i~~~~~ve~~aflnp-dGskvvVllnk~s 486 (518)
T KOG2566|consen 434 KQPMFYALGHFSKFLPPGSVRVGHSINQNLDVEATAFLNP-DGSKVVVLLNKNS 486 (518)
T ss_pred hccHHHHHHHHhhcCCCCceEeeeeeccccccceeEEEcC-CCcEEEEEeccCC
Confidence 4789999999999985544333 3333445666666555 6999999999875
No 29
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=59.99 E-value=12 Score=36.35 Aligned_cols=99 Identities=21% Similarity=0.198 Sum_probs=58.4
Q ss_pred CCcHHHHHHHHHcCCceEecCCcccceeeeecCCCCCCCCCCcCCCCCccCcc--cc--ccchhhHHHHHHHHhhcCCEE
Q 014399 73 LSHPLLANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFS--KG--CLHMQRWDELNQLFNRTRAIV 148 (425)
Q Consensus 73 ~~~~~l~~l~~~l~p~~LRiGG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~--~~--~i~~~~~d~~~~f~~~~g~~~ 148 (425)
.-.+...+.+|.+|-.+.|+||. |++- .... ...-+. ++...+|. +. |.+.++=+++++.-++ |.-|
T Consensus 87 AVs~~yE~~Lks~GitV~RigG~--nR~E--Ta~~--v~~~~~--~~yp~af~n~kvvvv~GwDy~~~~~e~~k~-~~~p 157 (337)
T COG2247 87 AVSPNYENALKSLGITVKRIGGA--NRYE--TAEK--VAKFFR--EDYPNAFKNVKVVVVYGWDYADALMELMKE-GIVP 157 (337)
T ss_pred cCChhHHHHHHhCCcEEEEecCc--chHH--HHHH--HHHHHH--hhchhhhcCeEEEEEeccccHHHHHHHHhc-Ccce
Confidence 44678889999999999999997 5432 1100 000011 12222222 22 3344444689999998 8877
Q ss_pred EEEeecCCCCcccCCCCCCCCCChHHHHHHHHHHHHcCCccc
Q 014399 149 SFGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTISMGYQID 190 (425)
Q Consensus 149 i~~lN~~~~~~~~~~~~~~~~w~~~~A~~~~~y~~~~~~~v~ 190 (425)
++-=|-.. .-.|...-+..+.+|+...++.++
T Consensus 158 ~~~~n~~~----------~~~~~~~~~l~~s~~a~~~~~pi~ 189 (337)
T COG2247 158 VILKNTSI----------LVRWSRKLALAESPYAANIGCPIL 189 (337)
T ss_pred eEeccccc----------ccccccceeeeecHhHHhcCCccc
Confidence 76444211 133554556667788888888886
No 30
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=59.53 E-value=1.8e+02 Score=28.44 Aligned_cols=220 Identities=12% Similarity=0.063 Sum_probs=99.8
Q ss_pred cchhhHHHHHHHHhhcCCEEEEEeec-CCCCcccCCCCCCC--CCChHH---HHHHH-HHH----HHcC--Cccceeeee
Q 014399 129 LHMQRWDELNQLFNRTRAIVSFGLNA-LHGRHNIRHNAWGG--AWDSNN---ARDFL-KYT----ISMG--YQIDSWEYG 195 (425)
Q Consensus 129 i~~~~~d~~~~f~~~~g~~~i~~lN~-~~~~~~~~~~~~~~--~w~~~~---A~~~~-~y~----~~~~--~~v~~wElG 195 (425)
++.+.-|++++||++.|.++---.=+ ... +++ +-.. .+++.+ ..+.+ +|. ...+ .+|..|.+=
T Consensus 56 ~~~~~~D~~~~~a~~~g~~vrGH~LvW~~~---~P~-w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y~~~g~i~~WDVv 131 (320)
T PF00331_consen 56 FNFESADAILDWARENGIKVRGHTLVWHSQ---TPD-WVFNLANGSPDEKEELRARLENHIKTVVTRYKDKGRIYAWDVV 131 (320)
T ss_dssp EE-HHHHHHHHHHHHTT-EEEEEEEEESSS---S-H-HHHTSTTSSBHHHHHHHHHHHHHHHHHHHHTTTTTTESEEEEE
T ss_pred cCccchhHHHHHHHhcCcceeeeeEEEccc---ccc-eeeeccCCCcccHHHHHHHHHHHHHHHHhHhccccceEEEEEe
Confidence 34455699999999999987633211 111 111 0011 123332 22222 332 2345 479999999
Q ss_pred ccCCCCCC--CCCCCCH------HHHHHHHHHHHHHHHHHhcCCCCCCeEeC----CCC-CCCH---HHHHHHHhhhCCC
Q 014399 196 NELSGRTS--IGASVDA------ELYGKDLINLKNIINELYKNSSSKPTILA----PGG-FFDQ---EWYAKFLQVSGSN 259 (425)
Q Consensus 196 NEpd~~~~--~~~~~t~------~~Ya~d~~~~~~~~~~~~~~~~~~~~~~g----p~~-~~~~---~w~~~~l~~~g~~ 259 (425)
|||=...+ .+-.-+. .+|.++ ..++.++.+|+ .+++= -.. .-.. .+++.+. ..|-
T Consensus 132 NE~i~~~~~~~~~r~~~~~~~lG~~yi~~---aF~~A~~~~P~----a~L~~NDy~~~~~~k~~~~~~lv~~l~-~~gv- 202 (320)
T PF00331_consen 132 NEAIDDDGNPGGLRDSPWYDALGPDYIAD---AFRAAREADPN----AKLFYNDYNIESPAKRDAYLNLVKDLK-ARGV- 202 (320)
T ss_dssp ES-B-TTSSSSSBCTSHHHHHHTTCHHHH---HHHHHHHHHTT----SEEEEEESSTTSTHHHHHHHHHHHHHH-HTTH-
T ss_pred eecccCCCccccccCChhhhcccHhHHHH---HHHHHHHhCCC----cEEEeccccccchHHHHHHHHHHHHHH-hCCC-
Confidence 99865422 1111111 234333 33444566665 35541 100 0001 2333433 3443
Q ss_pred ccceEEEeecCCCCCCChhhhhhccChhhhhhHHHHHHHHHHHHHHhCCCCceEEeccccCcCCCCCCcchHHHHHHHHH
Q 014399 260 VVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGAYNSGGRHVSNTFVNSFWYL 339 (425)
Q Consensus 260 ~id~vs~H~Y~~~~g~~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~~~~~p~wl~Etns~~~~G~~~vs~tf~aalw~l 339 (425)
.||.|.+...... +. + + +.+...++.+. .-++|+.+||..-......+.....-..|-++-
T Consensus 203 pIdgIG~Q~H~~~-~~-~--------~---~~i~~~l~~~~------~~Gl~i~ITElDv~~~~~~~~~~~~~~qA~~~~ 263 (320)
T PF00331_consen 203 PIDGIGLQSHFDA-GY-P--------P---EQIWNALDRFA------SLGLPIHITELDVRDDDNPPDAEEEEAQAEYYR 263 (320)
T ss_dssp CS-EEEEEEEEET-TS-S--------H---HHHHHHHHHHH------TTTSEEEEEEEEEESSSTTSCHHHHHHHHHHHH
T ss_pred ccceechhhccCC-CC-C--------H---HHHHHHHHHHH------HcCCceEEEeeeecCCCCCcchHHHHHHHHHHH
Confidence 3999987433211 11 1 1 11111122221 236999999986654322221112224555777
Q ss_pred HHhhcccccc---ceEEEEeeccC------c---cc-cCCCCCCCCCCcchHHHH
Q 014399 340 DQLGMSSKYN---TKVYCRQTLVG------G---NY-GLLNATTFIPNPDYYSAL 381 (425)
Q Consensus 340 D~l~~~A~~g---~~~v~~q~~~g------g---~Y-~l~~~~~~~p~P~Yy~~l 381 (425)
+++-.+.++. +..+.-.++.. . .+ .|++.+ +.|.|.|++.+
T Consensus 264 ~~~~~~~~~~~~~v~git~Wg~~D~~sW~~~~~~~~~~lfd~~-~~~Kpa~~~~~ 317 (320)
T PF00331_consen 264 DFLTACFSHPPAAVEGITWWGFTDGYSWRPDTPPDRPLLFDED-YQPKPAYDAIV 317 (320)
T ss_dssp HHHHHHHHTTHCTEEEEEESSSBTTGSTTGGHSEG--SSB-TT-SBB-HHHHHHH
T ss_pred HHHHHHHhCCccCCCEEEEECCCCCCcccCCCCCCCCeeECCC-cCCCHHHHHHH
Confidence 7776666665 44444333322 1 12 345555 78999998864
No 31
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=58.41 E-value=24 Score=36.75 Aligned_cols=102 Identities=11% Similarity=0.120 Sum_probs=63.9
Q ss_pred HHHHHHcCCceEecCCcccceeeeecCCCCCCCCCCcCCCCCccCccccccchhhHHHHHHHHhhcCCEEEEEeecCCCC
Q 014399 79 ANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNALHGR 158 (425)
Q Consensus 79 ~~l~~~l~p~~LRiGG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~i~~~~~d~~~~f~~~~g~~~i~~lN~~~~~ 158 (425)
+.|++.||-...|++=.++= .-|..... .+ +.- .-...+++++-+++.|.+|+++|.=-..+
T Consensus 75 I~Lm~elG~~~yRfSIsWsR---I~P~G~~~--~~------N~~-------gl~~Y~~lid~l~~~GI~P~vTL~H~dlP 136 (477)
T PRK15014 75 IKLFAEMGFKCFRTSIAWTR---IFPKGDEA--QP------NEE-------GLKFYDDMFDELLKYNIEPVITLSHFEMP 136 (477)
T ss_pred HHHHHHcCCCEEEeccccee---eccCCCCC--CC------CHH-------HHHHHHHHHHHHHHcCCEEEEEeeCCCCC
Confidence 57889999888887655432 11110000 00 000 12345888999999999999999522211
Q ss_pred cccCCCCCCCCC-ChHHHHHHHHHH----HHcCCccceeeeeccCCC
Q 014399 159 HNIRHNAWGGAW-DSNNARDFLKYT----ISMGYQIDSWEYGNELSG 200 (425)
Q Consensus 159 ~~~~~~~~~~~w-~~~~A~~~~~y~----~~~~~~v~~wElGNEpd~ 200 (425)
...-+ .-+.| +++.+..+++|| +..+.+|++|--=|||+.
T Consensus 137 ~~L~~--~yGGW~n~~~~~~F~~Ya~~~f~~fgdrVk~WiT~NEp~~ 181 (477)
T PRK15014 137 LHLVQ--QYGSWTNRKVVDFFVRFAEVVFERYKHKVKYWMTFNEINN 181 (477)
T ss_pred HHHHH--hcCCCCChHHHHHHHHHHHHHHHHhcCcCCEEEEecCccc
Confidence 10000 01567 566788889997 457889999999999984
No 32
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=58.03 E-value=46 Score=38.18 Aligned_cols=82 Identities=15% Similarity=0.178 Sum_probs=44.1
Q ss_pred HHHHHHHhhcCCEEEEEeecCC-CCcccCC--C-CCCCCCCh---HHHHHHHHHHHHcCCccceeeeeccCCCCCCCCCC
Q 014399 135 DELNQLFNRTRAIVSFGLNALH-GRHNIRH--N-AWGGAWDS---NNARDFLKYTISMGYQIDSWEYGNELSGRTSIGAS 207 (425)
Q Consensus 135 d~~~~f~~~~g~~~i~~lN~~~-~~~~~~~--~-~~~~~w~~---~~A~~~~~y~~~~~~~v~~wElGNEpd~~~~~~~~ 207 (425)
+.|++.|.+.|.=++=-.|+.. +-....+ . .....|.. .+++++++.- +.+..|..|.+|||+..
T Consensus 381 ~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~~~p~~~~~~~~~~~~mV~Rd-rNHPSIi~WslGNE~~~------- 452 (1021)
T PRK10340 381 PRFYELCDIYGLFVMAETDVESHGFANVGDISRITDDPQWEKVYVDRIVRHIHAQ-KNHPSIIIWSLGNESGY------- 452 (1021)
T ss_pred HHHHHHHHHCCCEEEECCcccccCcccccccccccCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCccc-------
Confidence 7899999999997665554321 1000000 0 00111211 1233333321 12233779999999742
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcC
Q 014399 208 VDAELYGKDLINLKNIINELYKN 230 (425)
Q Consensus 208 ~t~~~Ya~d~~~~~~~~~~~~~~ 230 (425)
...++++.+++|+.+|+
T Consensus 453 ------g~~~~~~~~~~k~~Dpt 469 (1021)
T PRK10340 453 ------GCNIRAMYHAAKALDDT 469 (1021)
T ss_pred ------cHHHHHHHHHHHHhCCC
Confidence 12456788899999886
No 33
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=57.82 E-value=80 Score=36.33 Aligned_cols=82 Identities=17% Similarity=0.099 Sum_probs=43.7
Q ss_pred HHHHHHHhhcCCEEEEEeecC-CCCcccCCCCCCCCCChHHHHHHHHHHHH--c-CCccceeeeeccCCCCCCCCCCCCH
Q 014399 135 DELNQLFNRTRAIVSFGLNAL-HGRHNIRHNAWGGAWDSNNARDFLKYTIS--M-GYQIDSWEYGNELSGRTSIGASVDA 210 (425)
Q Consensus 135 d~~~~f~~~~g~~~i~~lN~~-~~~~~~~~~~~~~~w~~~~A~~~~~y~~~--~-~~~v~~wElGNEpd~~~~~~~~~t~ 210 (425)
++|+++|.+.|.=++=-.|+. .+-...........|.. ...+.++.... + +..|..|.+|||+...
T Consensus 397 p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp~~~~-~~~~~~~~mV~RdrNHPSIi~WSlgNE~~~g--------- 466 (1027)
T PRK09525 397 PLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDPRWLP-AMSERVTRMVQRDRNHPSIIIWSLGNESGHG--------- 466 (1027)
T ss_pred HHHHHHHHHcCCEEEEecCccccCCccccCCCCCHHHHH-HHHHHHHHHHHhCCCCCEEEEEeCccCCCcC---------
Confidence 789999999999777665542 11000000000112321 11222222221 2 2337799999997521
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 014399 211 ELYGKDLINLKNIINELYKN 230 (425)
Q Consensus 211 ~~Ya~d~~~~~~~~~~~~~~ 230 (425)
..++++.+++|+.+|+
T Consensus 467 ----~~~~~l~~~~k~~Dpt 482 (1027)
T PRK09525 467 ----ANHDALYRWIKSNDPS 482 (1027)
T ss_pred ----hhHHHHHHHHHhhCCC
Confidence 1246678889998876
No 34
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=57.18 E-value=23 Score=36.79 Aligned_cols=103 Identities=10% Similarity=0.033 Sum_probs=65.9
Q ss_pred HHHHHHcCCceEecCCcccceeeeecCCCCCCCCCCcCCCCCccCccccccchhhHHHHHHHHhhcCCEEEEEeecCCCC
Q 014399 79 ANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNALHGR 158 (425)
Q Consensus 79 ~~l~~~l~p~~LRiGG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~i~~~~~d~~~~f~~~~g~~~i~~lN~~~~~ 158 (425)
+.+++.||-...|++=+++- .-|..... .+ +. =.-...+++++-+++.|.+|+++|+--..+
T Consensus 77 i~l~~~lG~~~yR~si~WsR---i~P~g~~~--~~------n~-------~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P 138 (474)
T PRK09852 77 IALMAEMGFKVFRTSIAWSR---LFPQGDEL--TP------NQ-------QGIAFYRSVFEECKKYGIEPLVTLCHFDVP 138 (474)
T ss_pred HHHHHHcCCCeEEeeceeee---eeeCCCCC--CC------CH-------HHHHHHHHHHHHHHHcCCEEEEEeeCCCCC
Confidence 46889999988898766442 22211000 00 00 112456899999999999999999853322
Q ss_pred cccCCCCCCCCCCh-HHHHHHHHHHH----HcCCccceeeeeccCCCC
Q 014399 159 HNIRHNAWGGAWDS-NNARDFLKYTI----SMGYQIDSWEYGNELSGR 201 (425)
Q Consensus 159 ~~~~~~~~~~~w~~-~~A~~~~~y~~----~~~~~v~~wElGNEpd~~ 201 (425)
...-+ .-+.|.. +.+..+++||+ ..+..|++|--=|||+..
T Consensus 139 ~~l~~--~~GGW~~~~~~~~F~~ya~~~~~~fgd~Vk~WiTfNEPn~~ 184 (474)
T PRK09852 139 MHLVT--EYGSWRNRKMVEFFSRYARTCFEAFDGLVKYWLTFNEINIM 184 (474)
T ss_pred HHHHH--hcCCCCCHHHHHHHHHHHHHHHHHhcCcCCeEEeecchhhh
Confidence 11100 0156755 45677788864 578899999999999854
No 35
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=55.79 E-value=41 Score=37.39 Aligned_cols=60 Identities=15% Similarity=0.205 Sum_probs=34.9
Q ss_pred HHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCCChHHHHHHHHHHH---HcCCccceeeeeccCCC
Q 014399 135 DELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTI---SMGYQIDSWEYGNELSG 200 (425)
Q Consensus 135 d~~~~f~~~~g~~~i~~lN~~~~~~~~~~~~~~~~w~~~~A~~~~~y~~---~~~~~v~~wElGNEpd~ 200 (425)
++|+++|.+.|.=||=-.++..-. .++ ...| .+++.+-+++.. +.+..|.-|.+|||+..
T Consensus 347 ~~~ydLcDelGllV~~Ea~~~~~~--~~~---~~~~-~k~~~~~i~~mver~knHPSIiiWs~gNE~~~ 409 (808)
T COG3250 347 EEFYDLCDELGLLVIDEAMIETHG--MPD---DPEW-RKEVSEEVRRMVERDRNHPSIIIWSLGNESGH 409 (808)
T ss_pred HHHHHHHHHhCcEEEEecchhhcC--CCC---Ccch-hHHHHHHHHHHHHhccCCCcEEEEeccccccC
Confidence 789999999999877666552210 111 1223 233433333322 22334669999999764
No 36
>PLN02849 beta-glucosidase
Probab=52.63 E-value=28 Score=36.55 Aligned_cols=68 Identities=18% Similarity=0.191 Sum_probs=47.8
Q ss_pred hhHHHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCCC-hHHHHHHHHHHH----HcCCccceeeeeccCCCC
Q 014399 132 QRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWD-SNNARDFLKYTI----SMGYQIDSWEYGNELSGR 201 (425)
Q Consensus 132 ~~~d~~~~f~~~~g~~~i~~lN~~~~~~~~~~~~~~~~w~-~~~A~~~~~y~~----~~~~~v~~wElGNEpd~~ 201 (425)
...+++++-+.+.|.+|+++|.=-.-+...-+ .-+.|. ++.+..+++||+ ..|.+|++|--=|||+..
T Consensus 119 ~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~~--~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk~WiT~NEP~~~ 191 (503)
T PLN02849 119 QFYKNFIQELVKHGIEPHVTLFHYDHPQYLED--DYGGWINRRIIKDFTAYADVCFREFGNHVKFWTTINEANIF 191 (503)
T ss_pred HHHHHHHHHHHHcCCeEEEeecCCCCcHHHHH--hcCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEEecchhhh
Confidence 34588889999999999999962211110000 015674 456788899974 578999999999999864
No 37
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=49.78 E-value=34 Score=35.65 Aligned_cols=68 Identities=15% Similarity=0.190 Sum_probs=47.7
Q ss_pred hhHHHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCCC-hHHHHHHHHHHH----HcCCccceeeeeccCCCC
Q 014399 132 QRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWD-SNNARDFLKYTI----SMGYQIDSWEYGNELSGR 201 (425)
Q Consensus 132 ~~~d~~~~f~~~~g~~~i~~lN~~~~~~~~~~~~~~~~w~-~~~A~~~~~y~~----~~~~~v~~wElGNEpd~~ 201 (425)
...+++++-+.+.|.+|+++|.=-..+...-+ .-+.|. ++.+..+++||+ ..|.+|++|--=|||+..
T Consensus 108 ~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~~--~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEp~~~ 180 (476)
T PRK09589 108 QFYDDLFDECLKQGIEPVVTLSHFEMPYHLVT--EYGGWRNRKLIDFFVRFAEVVFTRYKDKVKYWMTFNEINNQ 180 (476)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCCCCHHHHH--hcCCcCChHHHHHHHHHHHHHHHHhcCCCCEEEEecchhhh
Confidence 34588888999999999999962221110000 015674 456788889974 578999999999999854
No 38
>PLN02814 beta-glucosidase
Probab=49.35 E-value=32 Score=36.06 Aligned_cols=68 Identities=15% Similarity=0.158 Sum_probs=47.5
Q ss_pred hhHHHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCCC-hHHHHHHHHHHH----HcCCccceeeeeccCCCC
Q 014399 132 QRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWD-SNNARDFLKYTI----SMGYQIDSWEYGNELSGR 201 (425)
Q Consensus 132 ~~~d~~~~f~~~~g~~~i~~lN~~~~~~~~~~~~~~~~w~-~~~A~~~~~y~~----~~~~~v~~wElGNEpd~~ 201 (425)
...+++++-+.+.|.+|+++|.=-.-+...-+ --+.|. .+.+..+++||+ ..|.+|++|--=|||+..
T Consensus 117 ~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~--~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEP~~~ 189 (504)
T PLN02814 117 LFYKNLIKELRSHGIEPHVTLYHYDLPQSLED--EYGGWINRKIIEDFTAFADVCFREFGEDVKLWTTINEATIF 189 (504)
T ss_pred HHHHHHHHHHHHcCCceEEEecCCCCCHHHHH--hcCCcCChhHHHHHHHHHHHHHHHhCCcCCEEEeccccchh
Confidence 44588888999999999999962111110000 015574 456777888874 579999999999999865
No 39
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=48.84 E-value=36 Score=35.34 Aligned_cols=100 Identities=14% Similarity=0.173 Sum_probs=63.1
Q ss_pred HHHHHHcCCceEecCCcccceeeeecCCCCCCCCCCcCCCCCccCccccccchhhHHHHHHHHhhcCCEEEEEeecCCCC
Q 014399 79 ANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNALHGR 158 (425)
Q Consensus 79 ~~l~~~l~p~~LRiGG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~i~~~~~d~~~~f~~~~g~~~i~~lN~~~~~ 158 (425)
+.|++.||-...|++=.++= --|... .. -+.- .-...+++++-+++.|.+|+++|.=-.-+
T Consensus 60 i~L~~~lG~~~yRfSIsWsR---I~P~G~-g~--------vN~~-------gl~~Y~~lid~l~~~GI~P~VTL~H~dlP 120 (469)
T PRK13511 60 LKLAEEFGVNGIRISIAWSR---IFPDGY-GE--------VNPK-------GVEYYHRLFAECHKRHVEPFVTLHHFDTP 120 (469)
T ss_pred HHHHHHhCCCEEEeeccHhh---cCcCCC-CC--------cCHH-------HHHHHHHHHHHHHHcCCEEEEEecCCCCc
Confidence 47888999888887654331 001100 00 0000 12445889999999999999999632221
Q ss_pred cccCCCCCCCCCC-hHHHHHHHHHHH----HcCCccceeeeeccCCCC
Q 014399 159 HNIRHNAWGGAWD-SNNARDFLKYTI----SMGYQIDSWEYGNELSGR 201 (425)
Q Consensus 159 ~~~~~~~~~~~w~-~~~A~~~~~y~~----~~~~~v~~wElGNEpd~~ 201 (425)
...-+ .+.|. ++.+..+++||+ ..|. |++|--=|||+..
T Consensus 121 ~~L~~---~GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W~T~NEP~~~ 164 (469)
T PRK13511 121 EALHS---NGDWLNRENIDHFVRYAEFCFEEFPE-VKYWTTFNEIGPI 164 (469)
T ss_pred HHHHH---cCCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEEccchhhh
Confidence 11111 36674 456778888874 5788 9999999999865
No 40
>PLN02998 beta-glucosidase
Probab=44.96 E-value=38 Score=35.44 Aligned_cols=67 Identities=19% Similarity=0.279 Sum_probs=47.6
Q ss_pred hhHHHHHHHHhhcCCEEEEEeecCCCCcccCCCCCC-CCCC-hHHHHHHHHHHH----HcCCccceeeeeccCCCC
Q 014399 132 QRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWG-GAWD-SNNARDFLKYTI----SMGYQIDSWEYGNELSGR 201 (425)
Q Consensus 132 ~~~d~~~~f~~~~g~~~i~~lN~~~~~~~~~~~~~~-~~w~-~~~A~~~~~y~~----~~~~~v~~wElGNEpd~~ 201 (425)
...+.+++-+.+.|.+|+++|.=-.-+.... .. +.|. ++.+..+++||+ ..|.+|++|--=|||+..
T Consensus 122 ~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~---~~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~~ 194 (497)
T PLN02998 122 QYYNNLIDELITHGIQPHVTLHHFDLPQALE---DEYGGWLSQEIVRDFTAYADTCFKEFGDRVSHWTTINEVNVF 194 (497)
T ss_pred HHHHHHHHHHHHcCCceEEEecCCCCCHHHH---HhhCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEEccCcchh
Confidence 3458888899999999999996221111100 01 5574 456778888874 579999999999999965
No 41
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=44.37 E-value=25 Score=36.32 Aligned_cols=67 Identities=15% Similarity=0.167 Sum_probs=46.2
Q ss_pred hhHHHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCC-ChHHHHHHHHHHH----HcCCccceeeeeccCCCC
Q 014399 132 QRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAW-DSNNARDFLKYTI----SMGYQIDSWEYGNELSGR 201 (425)
Q Consensus 132 ~~~d~~~~f~~~~g~~~i~~lN~~~~~~~~~~~~~~~~w-~~~~A~~~~~y~~----~~~~~v~~wElGNEpd~~ 201 (425)
...+++++-+++.|.+||++|.=-.-+...-+ .+.| +++.+..+++||+ ..+..|++|--=|||+..
T Consensus 99 ~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~---~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~w~T~NEp~~~ 170 (455)
T PF00232_consen 99 DFYRDLIDELLENGIEPIVTLYHFDLPLWLED---YGGWLNRETVDWFARYAEFVFERFGDRVKYWITFNEPNVF 170 (455)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEESS--BHHHHH---HTGGGSTHHHHHHHHHHHHHHHHHTTTBSEEEEEETHHHH
T ss_pred hhhHHHHHHHHhhccceeeeeeecccccceee---cccccCHHHHHHHHHHHHHHHHHhCCCcceEEecccccee
Confidence 34588888899999999999973221110000 2456 4566778888974 578899999999999864
No 42
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=44.25 E-value=14 Score=21.71 Aligned_cols=12 Identities=33% Similarity=0.661 Sum_probs=9.3
Q ss_pred hhhHHHHHHhhh
Q 014399 3 IFLSLFIYLISY 14 (425)
Q Consensus 3 ~~~~~~~~~~~~ 14 (425)
+.+++||.||--
T Consensus 10 livVLFILLIIi 21 (26)
T TIGR01732 10 LIVVLFILLVIV 21 (26)
T ss_pred HHHHHHHHHHHh
Confidence 568899998854
No 43
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=43.65 E-value=55 Score=34.09 Aligned_cols=68 Identities=9% Similarity=0.073 Sum_probs=47.6
Q ss_pred hhHHHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCCCh-HHHHHHHHHHH----HcCCccceeeeeccCCCC
Q 014399 132 QRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDS-NNARDFLKYTI----SMGYQIDSWEYGNELSGR 201 (425)
Q Consensus 132 ~~~d~~~~f~~~~g~~~i~~lN~~~~~~~~~~~~~~~~w~~-~~A~~~~~y~~----~~~~~v~~wElGNEpd~~ 201 (425)
...+++++-+.+.|.+|+++|.=-..+...- ..-+.|.. +.+..+++||+ ..|.+|++|--=|||+..
T Consensus 114 ~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~--~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~~ 186 (478)
T PRK09593 114 QFYEDIFKECHKYGIEPLVTITHFDCPMHLI--EEYGGWRNRKMVGFYERLCRTLFTRYKGLVKYWLTFNEINMI 186 (478)
T ss_pred HHHHHHHHHHHHcCCEEEEEecccCCCHHHH--hhcCCCCChHHHHHHHHHHHHHHHHhcCcCCEEEeecchhhh
Confidence 4458899999999999999995211111000 00156754 45677888874 579999999999999965
No 44
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=43.04 E-value=49 Score=34.34 Aligned_cols=100 Identities=12% Similarity=0.113 Sum_probs=62.3
Q ss_pred HHHHHHcCCceEecCCcccceeeeecCCCCCCCCCCcCCCCCccCccccccchhhHHHHHHHHhhcCCEEEEEeecCCCC
Q 014399 79 ANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNALHGR 158 (425)
Q Consensus 79 ~~l~~~l~p~~LRiGG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~i~~~~~d~~~~f~~~~g~~~i~~lN~~~~~ 158 (425)
+.|++.||-...|++=.++=- -|.. ... .+ . =.-...+++++-+++.|.+|+++|.=-..+
T Consensus 59 i~L~~~lG~~~yRfSIsWsRI---~P~g-~~~-----~N---~-------~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP 119 (467)
T TIGR01233 59 LELAEEYGVNGIRISIAWSRI---FPTG-YGE-----VN---E-------KGVEFYHKLFAECHKRHVEPFVTLHHFDTP 119 (467)
T ss_pred HHHHHHcCCCEEEEecchhhc---cCCC-CCC-----cC---H-------HHHHHHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 478899998888876553321 1110 000 00 0 012445888889999999999999632221
Q ss_pred cccCCCCCCCCCC-hHHHHHHHHHHH----HcCCccceeeeeccCCCC
Q 014399 159 HNIRHNAWGGAWD-SNNARDFLKYTI----SMGYQIDSWEYGNELSGR 201 (425)
Q Consensus 159 ~~~~~~~~~~~w~-~~~A~~~~~y~~----~~~~~v~~wElGNEpd~~ 201 (425)
...- ..+.|. ++.+..+++||+ ..+. |++|--=|||+..
T Consensus 120 ~~L~---~~GGW~n~~~v~~F~~YA~~~f~~fgd-Vk~WiT~NEP~~~ 163 (467)
T TIGR01233 120 EALH---SNGDFLNRENIEHFIDYAAFCFEEFPE-VNYWTTFNEIGPI 163 (467)
T ss_pred HHHH---HcCCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEEecchhhh
Confidence 1111 125674 456777888874 4675 9999999999875
No 45
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=40.48 E-value=60 Score=31.10 Aligned_cols=129 Identities=10% Similarity=0.029 Sum_probs=64.2
Q ss_pred ccchhhHHHHHHHHhhcCCEEEEEeecCCCCc-ccCCCCCCCCCChHHHHHHHHHHHHcCCccceeeeeccCCCCCCCCC
Q 014399 128 CLHMQRWDELNQLFNRTRAIVSFGLNALHGRH-NIRHNAWGGAWDSNNARDFLKYTISMGYQIDSWEYGNELSGRTSIGA 206 (425)
Q Consensus 128 ~i~~~~~d~~~~f~~~~g~~~i~~lN~~~~~~-~~~~~~~~~~w~~~~A~~~~~y~~~~~~~v~~wElGNEpd~~~~~~~ 206 (425)
.++......+++||.+.|++-++. |.+=... .....+....+......++++|++++|..|..|---+.
T Consensus 28 g~~t~~~k~yIDfAa~~G~eYvlv-D~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~--------- 97 (273)
T PF10566_consen 28 GATTETQKRYIDFAAEMGIEYVLV-DAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSET--------- 97 (273)
T ss_dssp SSSHHHHHHHHHHHHHTT-SEEEE-BTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCH---------
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEe-ccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCc---------
Confidence 456777899999999999998875 4321100 00000111122346688999999999988877743222
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCCCCCeEeCCCCCCCHHHHHHHHhhhCCCccceEEEee
Q 014399 207 SVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGFFDQEWYAKFLQVSGSNVVNGVTHHI 268 (425)
Q Consensus 207 ~~t~~~Ya~d~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~w~~~~l~~~g~~~id~vs~H~ 268 (425)
.++...|-++.+++-+.+++. +-...++.+++-+...-..|.+++++.+....+ .|.+|-
T Consensus 98 ~~~~~~~~~~~~~~f~~~~~~-Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~~L-mvnfHg 157 (273)
T PF10566_consen 98 GGNVANLEKQLDEAFKLYAKW-GVKGVKIDFMDRDDQEMVNWYEDILEDAAEYKL-MVNFHG 157 (273)
T ss_dssp TTBHHHHHCCHHHHHHHHHHC-TEEEEEEE--SSTSHHHHHHHHHHHHHHHHTT--EEEETT
T ss_pred chhhHhHHHHHHHHHHHHHHc-CCCEEeeCcCCCCCHHHHHHHHHHHHHHHHcCc-EEEecC
Confidence 234444544434444444442 100012233333322223567778776643223 577884
No 46
>KOG0564 consensus 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=38.20 E-value=1.2e+02 Score=31.39 Aligned_cols=64 Identities=16% Similarity=0.113 Sum_probs=38.6
Q ss_pred chhhHHHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCCChHH-----HHHHHHHHHHc-CCccceeeeeccCCCC
Q 014399 130 HMQRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNN-----ARDFLKYTISM-GYQIDSWEYGNELSGR 201 (425)
Q Consensus 130 ~~~~~d~~~~f~~~~g~~~i~~lN~~~~~~~~~~~~~~~~w~~~~-----A~~~~~y~~~~-~~~v~~wElGNEpd~~ 201 (425)
..+..|.-++-|++.|++=|+.|- |+ ++- .+..|...+ |.++++|.+++ |..+ +..+.=-|.++
T Consensus 90 ~~~~Id~aLe~a~~~GirNILALR---GD--pP~--g~d~~~~~e~gF~yA~DLVr~Irs~YGDyF-~IgVAgYPEgh 159 (590)
T KOG0564|consen 90 PKEMIDKALEQAKALGIRNILALR---GD--PPI--GQDKWVEEEGGFRYAVDLVRYIRSKYGDYF-CIGVAGYPEGH 159 (590)
T ss_pred cHHHHHHHHHHHHHhCchhhhhhc---CC--CCC--CccccccccCCchhHHHHHHHHHHHhCCeE-EEEeccCCCCC
Confidence 345668888889999999888652 21 121 123465554 99999998753 4322 34443344443
No 47
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=34.40 E-value=3.8e+02 Score=24.84 Aligned_cols=80 Identities=25% Similarity=0.292 Sum_probs=53.5
Q ss_pred HHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCCCh---HHHHHHHHHHHHcCCccceeeeeccCCCCCCCCCCCCHH
Q 014399 135 DELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDS---NNARDFLKYTISMGYQIDSWEYGNELSGRTSIGASVDAE 211 (425)
Q Consensus 135 d~~~~f~~~~g~~~i~~lN~~~~~~~~~~~~~~~~w~~---~~A~~~~~y~~~~~~~v~~wElGNEpd~~~~~~~~~t~~ 211 (425)
.++-..++++|.. |+.+|.+..- ..|+. .+|..+++|+..-|-+-.-..-=|. +. +.+.....+
T Consensus 52 a~vka~Aek~Gl~-IvSINAlypF---------n~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd--~s-~~~~~vr~~ 118 (272)
T COG4130 52 AEVKALAEKAGLT-IVSINALYPF---------NEWTEERVAEARGLADYAAACGAKALVLCPLND--GS-WPGTAVRRE 118 (272)
T ss_pred HHHHHHHHHcCcE-EEEeeccccc---------cccChHHHHHHHHHHHHHHhcCCceEEEEeccC--CC-CCCcccchH
Confidence 6677788999985 6789988753 45764 5788999998876665323444454 22 334456677
Q ss_pred HHHHHHHHHHHHHHHH
Q 014399 212 LYGKDLINLKNIINEL 227 (425)
Q Consensus 212 ~Ya~d~~~~~~~~~~~ 227 (425)
+.....+.++-++.+.
T Consensus 119 ~lv~AlkaLkpil~~~ 134 (272)
T COG4130 119 DLVEALKALKPILDEY 134 (272)
T ss_pred HHHHHHHHhhHHHHHh
Confidence 7777777777777664
No 48
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=34.09 E-value=1e+02 Score=31.77 Aligned_cols=106 Identities=13% Similarity=0.104 Sum_probs=64.8
Q ss_pred HHHHHHHHHcCCceEecCCcccceeeeecCCCCCCCCCCcCCCCCccCccccccchhhHHHHHHHHhhcCCEEEEEeecC
Q 014399 76 PLLANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNAL 155 (425)
Q Consensus 76 ~~l~~l~~~l~p~~LRiGG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~i~~~~~d~~~~f~~~~g~~~i~~lN~~ 155 (425)
+.=+.|++.+|--..|++=.++= +|-.+.+..+ +.- .-...+++.+=|.+.|.+|+++|.=-
T Consensus 62 keDi~L~~emG~~~~R~SI~WsR--IfP~g~~~e~---------N~~-------gl~fY~~l~del~~~gIep~vTL~Hf 123 (460)
T COG2723 62 KEDIALAKEMGLNAFRTSIEWSR--IFPNGDGGEV---------NEK-------GLRFYDRLFDELKARGIEPFVTLYHF 123 (460)
T ss_pred HHHHHHHHHcCCCEEEeeeeEEE--eecCCCCCCc---------CHH-------HHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 44468999999888887544321 1211111000 000 12345888888999999999998622
Q ss_pred CCCcccCCCCCCCCCChH-HHHHHHHHHH----HcCCccceeeeeccCCCC
Q 014399 156 HGRHNIRHNAWGGAWDSN-NARDFLKYTI----SMGYQIDSWEYGNELSGR 201 (425)
Q Consensus 156 ~~~~~~~~~~~~~~w~~~-~A~~~~~y~~----~~~~~v~~wElGNEpd~~ 201 (425)
..+...-+ .-+.|... ....+++||+ +.+.+|++|-.=|||+..
T Consensus 124 d~P~~L~~--~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk~W~TFNE~n~~ 172 (460)
T COG2723 124 DLPLWLQK--PYGGWENRETVDAFARYAATVFERFGDKVKYWFTFNEPNVV 172 (460)
T ss_pred CCcHHHhh--ccCCccCHHHHHHHHHHHHHHHHHhcCcceEEEEecchhhh
Confidence 11111111 11468654 4566778864 578899999999999865
No 49
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=33.52 E-value=37 Score=32.95 Aligned_cols=46 Identities=11% Similarity=0.328 Sum_probs=35.7
Q ss_pred hhcCCEEEEEeecCCCCcccCCCCCCCCCChHHHHHHHHHHHHcCCc-cceeeeecc
Q 014399 142 NRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTISMGYQ-IDSWEYGNE 197 (425)
Q Consensus 142 ~~~g~~~i~~lN~~~~~~~~~~~~~~~~w~~~~A~~~~~y~~~~~~~-v~~wElGNE 197 (425)
+..|+.||+|+|--.. .-...++|+.++.|++++|.. +..|.+.=.
T Consensus 219 ~~ig~TpMiG~nD~~~----------e~ft~~da~~~~~fA~~~~l~~~s~Ws~~RD 265 (294)
T cd06543 219 AMIGVTPMIGVNDVGS----------EVFTLADAQTLVDFAKEKGLGRLSMWSLNRD 265 (294)
T ss_pred HHccccccccccCCCC----------ceeeHHHHHHHHHHHHhCCCCeEeeeeccCC
Confidence 4589999999995321 235789999999999988875 888988533
No 50
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=33.35 E-value=1.9e+02 Score=22.99 Aligned_cols=103 Identities=17% Similarity=0.221 Sum_probs=57.3
Q ss_pred hhhHHHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCCChHHHHHHHHHHHHcCCccceeeeeccCCCCCCCCCCCCH
Q 014399 131 MQRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTISMGYQIDSWEYGNELSGRTSIGASVDA 210 (425)
Q Consensus 131 ~~~~d~~~~f~~~~g~~~i~~lN~~~~~~~~~~~~~~~~w~~~~A~~~~~y~~~~~~~v~~wElGNEpd~~~~~~~~~t~ 210 (425)
.+.++.++++.++.|++..|-+.-. | ..+-.+.++...+. .+||||-..... .-...+.
T Consensus 17 ~~~~~~~~~~l~~~~i~at~fv~~~--------------~-~~~~~~~l~~l~~~-----G~ei~~H~~~H~-~~~~~~~ 75 (123)
T PF01522_consen 17 RDNYDRLLPLLKKYGIPATFFVIGS--------------W-VERYPDQLRELAAA-----GHEIGNHGWSHP-NLSTLSP 75 (123)
T ss_dssp HTHHHHHHHHHHHTT--EEEEE-HH--------------H-HHHHHHHHHHHHHT-----T-EEEEE-SSSS-CGGGS-H
T ss_pred hhhHHHHHHHHHhcccceeeeeccc--------------c-cccccccchhHHHH-----HHHHHhcCCccc-ccccCCH
Confidence 3456899999999999999877521 1 22233445544442 588898876541 1235678
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCeEeCCCCCCCHHHHHHHHhhhC
Q 014399 211 ELYGKDLINLKNIINELYKNSSSKPTILAPGGFFDQEWYAKFLQVSG 257 (425)
Q Consensus 211 ~~Ya~d~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~w~~~~l~~~g 257 (425)
++..++..+-++.|++..+.. -.-+.-|.+..+. -..+.+.+.|
T Consensus 76 ~~~~~ei~~~~~~l~~~~g~~--~~~f~~P~g~~~~-~~~~~l~~~G 119 (123)
T PF01522_consen 76 EELRREIERSREILEEITGRP--PKGFRYPFGSYDD-NTLQALREAG 119 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHSSE--ESEEE-GGGEECH-HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhCCC--CcEEECCCCCCCH-HHHHHHHHcC
Confidence 888889999999998875431 1133445544332 2334444443
No 51
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=31.84 E-value=33 Score=19.76 Aligned_cols=12 Identities=42% Similarity=0.686 Sum_probs=9.0
Q ss_pred hhhHHHHHHhhh
Q 014399 3 IFLSLFIYLISY 14 (425)
Q Consensus 3 ~~~~~~~~~~~~ 14 (425)
..+++||.||--
T Consensus 8 livVLFILLiIv 19 (24)
T PF09680_consen 8 LIVVLFILLIIV 19 (24)
T ss_pred hHHHHHHHHHHh
Confidence 467899988754
No 52
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=29.32 E-value=4e+02 Score=23.46 Aligned_cols=98 Identities=20% Similarity=0.345 Sum_probs=59.6
Q ss_pred HHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCCChHHHHHHHHHHHHcCCccceeeeeccCCCCCCCCCCCCHHHHH
Q 014399 135 DELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTISMGYQIDSWEYGNELSGRTSIGASVDAELYG 214 (425)
Q Consensus 135 d~~~~f~~~~g~~~i~~lN~~~~~~~~~~~~~~~~w~~~~A~~~~~y~~~~~~~v~~wElGNEpd~~~~~~~~~t~~~Ya 214 (425)
..+.+..++.|++..|=++-. |. .+-.++++...+. .+||||=.+.... -..+++++..
T Consensus 22 ~~~l~~L~~~~ikaTfFv~g~--------------~~-~~~~~~~~~i~~~-----Gheig~Ht~~H~~-~~~~~~~~~~ 80 (191)
T TIGR02764 22 EPILDTLKEYDVKATFFLSGS--------------WA-ERHPELVKEIVKD-----GHEIGSHGYRHKN-YTTLEDEKIK 80 (191)
T ss_pred HHHHHHHHHcCCCEEEEeccH--------------HH-HHCHHHHHHHHhC-----CCEEEECCcCCCC-cccCCHHHHH
Confidence 567888889999988865411 11 1112344444443 4789998765421 2357888888
Q ss_pred HHHHHHHHHHHHHhcCCCCCCeEe-CCCCCCCHHHHHHHHhhhC
Q 014399 215 KDLINLKNIINELYKNSSSKPTIL-APGGFFDQEWYAKFLQVSG 257 (425)
Q Consensus 215 ~d~~~~~~~~~~~~~~~~~~~~~~-gp~~~~~~~w~~~~l~~~g 257 (425)
++...-.++|++..+. .++.+ -|.+..+ .-..+.+.+.|
T Consensus 81 ~ei~~~~~~l~~~~g~---~~~~fr~P~G~~~-~~~~~~l~~~G 120 (191)
T TIGR02764 81 KDILRAQEIIEKLTGK---KPTLFRPPSGAFN-KAVLKAAESLG 120 (191)
T ss_pred HHHHHHHHHHHHHhCC---CCCEEECCCcCCC-HHHHHHHHHcC
Confidence 9999999999887532 23444 4655533 33445555544
No 53
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=28.06 E-value=3.9e+02 Score=27.07 Aligned_cols=93 Identities=15% Similarity=0.085 Sum_probs=47.3
Q ss_pred hHHHHHHHHhhcCCEEEEEeecCCCCcccCCCCC-CCCCCh-----HHHHHHHHHH-HH--cCCccceeeeeccCCCCCC
Q 014399 133 RWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAW-GGAWDS-----NNARDFLKYT-IS--MGYQIDSWEYGNELSGRTS 203 (425)
Q Consensus 133 ~~d~~~~f~~~~g~~~i~~lN~~~~~~~~~~~~~-~~~w~~-----~~A~~~~~y~-~~--~~~~v~~wElGNEpd~~~~ 203 (425)
..++..+++++.|..+++.+-...+....-+..+ .+.+.. +.-.+..++. .+ ....|-.+|+=|||.+. .
T Consensus 117 ~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~~-~ 195 (407)
T COG2730 117 ILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDYKEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNGI-V 195 (407)
T ss_pred HHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccccccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCccc-C
Confidence 5689999999999999998644321100001011 112222 2233333332 21 23447689999999962 2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHH
Q 014399 204 IGASVDAELYGKDLINLKNIINEL 227 (425)
Q Consensus 204 ~~~~~t~~~Ya~d~~~~~~~~~~~ 227 (425)
.+..|+... ...+..+++.+...
T Consensus 196 ~~~~w~~~~-~~A~~~v~~~i~~~ 218 (407)
T COG2730 196 TSETWNGGD-DEAYDVVRNAILSN 218 (407)
T ss_pred Cccccccch-HHHHHHHHhhhhhc
Confidence 223333322 23344454544443
No 54
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=27.83 E-value=3.8e+02 Score=27.01 Aligned_cols=90 Identities=16% Similarity=0.216 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCeEeCCCCCCCHHHHHHHHhhhCCCccceEEEeecCCCCCCChhhhhhccChhhhhhHHHH
Q 014399 216 DLINLKNIINELYKNSSSKPTILAPGGFFDQEWYAKFLQVSGSNVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSET 295 (425)
Q Consensus 216 d~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~w~~~~l~~~g~~~id~vs~H~Y~~~~g~~~~~~~~ll~~~~l~~~~~~ 295 (425)
|+..++-.++++..+..-...++-.+-+.+.+++..||+..+- .. +.|..+.+.+..+.. +.....
T Consensus 15 E~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i---~~---pdy~L~i~~~~~tl~--------~~t~~~ 80 (383)
T COG0381 15 EAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGI---RK---PDYDLNIMKPGQTLG--------EITGNI 80 (383)
T ss_pred HHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCC---CC---CCcchhccccCCCHH--------HHHHHH
Confidence 4556666666663332123455556666677889999986652 22 334333221111111 122345
Q ss_pred HHHHHHHHHHhCCCCceEEecccc
Q 014399 296 FGNLKQTIEKHGPWASAWVGESGG 319 (425)
Q Consensus 296 ~~~~~~~~~~~~~~~p~wl~Etns 319 (425)
+..+.+++.+..|+..+..|-|++
T Consensus 81 i~~~~~vl~~~kPD~VlVhGDT~t 104 (383)
T COG0381 81 IEGLSKVLEEEKPDLVLVHGDTNT 104 (383)
T ss_pred HHHHHHHHHhhCCCEEEEeCCcch
Confidence 677788888888999999998875
No 55
>PLN02803 beta-amylase
Probab=26.90 E-value=1.6e+02 Score=30.95 Aligned_cols=94 Identities=14% Similarity=0.147 Sum_probs=52.1
Q ss_pred hhhHHHHHHHHhhcCCEEEEEeecCC-CCcccCCC--CCCCCCChHHHHH--HHHHHHHcCCc---cceeeeeccCCCCC
Q 014399 131 MQRWDELNQLFNRTRAIVSFGLNALH-GRHNIRHN--AWGGAWDSNNARD--FLKYTISMGYQ---IDSWEYGNELSGRT 202 (425)
Q Consensus 131 ~~~~d~~~~f~~~~g~~~i~~lN~~~-~~~~~~~~--~~~~~w~~~~A~~--~~~y~~~~~~~---v~~wElGNEpd~~~ 202 (425)
.+...++.+++++.|+|+...+.+.. |. ++.|. -+-..|-.+.... =+-|..+.|.+ -..|.+-|+|-+.
T Consensus 143 WsgY~~l~~mvr~~GLKlq~vmSFHqCGG-NVGD~~~IpLP~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~- 220 (548)
T PLN02803 143 WEGYAELVQMVQKHGLKLQVVMSFHQCGG-NVGDSCSIPLPPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLR- 220 (548)
T ss_pred cHHHHHHHHHHHHcCCeEEEEEEecccCC-CCCCcccccCCHHHHHhhhcCCCceEecCCCCcccceeccccccchhcc-
Confidence 34569999999999999999888742 11 11110 1122332221110 01111122211 2255556666553
Q ss_pred CCCCCCCH-HHHHHHHHHHHHHHHHHhcC
Q 014399 203 SIGASVDA-ELYGKDLINLKNIINELYKN 230 (425)
Q Consensus 203 ~~~~~~t~-~~Ya~d~~~~~~~~~~~~~~ 230 (425)
.-|| +.|.+-.+.|++.++.+..+
T Consensus 221 ----GRTplq~Y~Dfm~SFr~~F~~~l~~ 245 (548)
T PLN02803 221 ----GRTPIQVYSDYMRSFRERFKDYLGG 245 (548)
T ss_pred ----CCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 3466 66988899999999887644
No 56
>PF01870 Hjc: Archaeal holliday junction resolvase (hjc); InterPro: IPR002732 This entry represents Holliday junction resolvases (hjc gene) and related proteins, primarily from archaeal species []. The Holliday junction is an essential intermediate of homologous recombination. Holliday junctions are four-stranded DNA complexes that are formed during recombination and related DNA repair events. In the presence of divalent cations, these junctions exist predominantly as the stacked-X form in which the double-helical segments are coaxially stacked and twisted by 60 degrees in a right-handed direction across the junction cross-over. In this structure, the stacked arms resemble two adjacent double-helices, but are linked at the junction by two common strands that cross-over between the duplexes []. During homologous recombination, genetic information is physically exchanged between parental DNAs via crossing single strands of the same polarity within the four-way Holliday structure. This process is terminated by the endonucleolytic activity of resolvases, which convert the four-way DNA back to two double strands.; PDB: 2WJ0_A 2WIZ_B 2WIW_B 2WCW_C 2WCZ_A 1HH1_A 1GEF_D 1IPI_B 2EO0_B 1OB9_A ....
Probab=26.28 E-value=1.8e+02 Score=22.64 Aligned_cols=71 Identities=15% Similarity=0.056 Sum_probs=47.2
Q ss_pred HHHHHHHHHcCCceEecCCc-ccceeeeecCCC-CCCCCCCcCCCCCccCccccccchhhHHHHHHHHhhcCCEEEEEee
Q 014399 76 PLLANAIQAFQSLRIRIGGS-LQDQVLYDVGDL-KAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLN 153 (425)
Q Consensus 76 ~~l~~l~~~l~p~~LRiGG~-~~D~~~~~~~~~-~~~~~p~~~~~~~~~g~~~~~i~~~~~d~~~~f~~~~g~~~i~~lN 153 (425)
..|.+++..-|=.++|..|+ ..|-.--+.+.. .-.|... . ..+..+.+.+++.+.+|++..|.++++.+=
T Consensus 4 rel~~~L~~~Gf~v~R~~~Sg~~DiiA~~~~~~l~IEvKs~----~----~~~~~l~~eqve~L~~f~~~fg~~p~iAvK 75 (88)
T PF01870_consen 4 RELVKILWERGFAVVRAAGSGGGDIIAGKGGRYLAIEVKST----S----KDKIYLEKEQVEKLKEFSKRFGAEPLIAVK 75 (88)
T ss_dssp HHHHHHHHHTT-EEEEBSCCSSSSEEEEETTEEEEEEEEEE----S----SSEEEEEHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHhCCcEEEEecCCCCcCEEEECCCEEEEEEEeec----c----CCceeECHHHHHHHHHHHHHhCCeEEEEEE
Confidence 35778888888899998665 446555444321 0012110 0 013578899999999999999999999987
Q ss_pred c
Q 014399 154 A 154 (425)
Q Consensus 154 ~ 154 (425)
+
T Consensus 76 ~ 76 (88)
T PF01870_consen 76 F 76 (88)
T ss_dssp E
T ss_pred E
Confidence 6
No 57
>COG1591 Holliday junction resolvase - archaeal type [DNA replication, recombination, and repair]
Probab=26.00 E-value=1.9e+02 Score=24.59 Aligned_cols=73 Identities=15% Similarity=0.003 Sum_probs=46.5
Q ss_pred cHHHHHHHHHcCCceEecCCcc------cceeeeecCCC-CCCCCCCcCCCCCccCccccccchhhHHHHHHHHhhcCCE
Q 014399 75 HPLLANAIQAFQSLRIRIGGSL------QDQVLYDVGDL-KAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAI 147 (425)
Q Consensus 75 ~~~l~~l~~~l~p~~LRiGG~~------~D~~~~~~~~~-~~~~~p~~~~~~~~~g~~~~~i~~~~~d~~~~f~~~~g~~ 147 (425)
...|++++...|=.+||..++- .|-.-.+.+.. .-.|.... .++..+.+...+.+..|++..|.+
T Consensus 10 EReLv~~L~e~GfAvvR~paSG~sk~p~pDivA~~g~~~l~iE~K~~~--------~~kiYl~~e~ve~L~~FA~~fGg~ 81 (137)
T COG1591 10 ERELVRILWERGFAVVRAPASGGSKRPLPDIVAGNGGVYLAIEVKSRR--------ETKIYLDKEQVEKLVEFARRFGGE 81 (137)
T ss_pred HHHHHHHHHhcCceEEEcccCCCCCCCCCCEEecCCCEEEEEEEEecc--------CCcEEEcHHHHHHHHHHHHHcCCc
Confidence 4568889999999999983332 12221111100 00111100 124567889999999999999999
Q ss_pred EEEEeecC
Q 014399 148 VSFGLNAL 155 (425)
Q Consensus 148 ~i~~lN~~ 155 (425)
+++++-+.
T Consensus 82 p~iavKf~ 89 (137)
T COG1591 82 PYIAVKFP 89 (137)
T ss_pred eEEEEEeC
Confidence 99999764
No 58
>PLN02161 beta-amylase
Probab=25.23 E-value=1.7e+02 Score=30.66 Aligned_cols=94 Identities=11% Similarity=0.024 Sum_probs=53.4
Q ss_pred hhhHHHHHHHHhhcCCEEEEEeecCC-CCcccCCC--CCCCCCChHHHHH--HHHHHHHcCCc---cceeeeeccCCCCC
Q 014399 131 MQRWDELNQLFNRTRAIVSFGLNALH-GRHNIRHN--AWGGAWDSNNARD--FLKYTISMGYQ---IDSWEYGNELSGRT 202 (425)
Q Consensus 131 ~~~~d~~~~f~~~~g~~~i~~lN~~~-~~~~~~~~--~~~~~w~~~~A~~--~~~y~~~~~~~---v~~wElGNEpd~~~ 202 (425)
.+...++.+++++.|+|+...+.+.. +. ++.++ -+-..|-.+.... =+-|..+.|.+ -..|.+-|+|-+.
T Consensus 153 WsgY~~l~~mvr~~GLKlq~vmSFHqCGG-NvGd~~~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~- 230 (531)
T PLN02161 153 WSLYEELFRLISEAGLKLHVALCFHSNMH-LFGGKGGISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFG- 230 (531)
T ss_pred cHHHHHHHHHHHHcCCeEEEEEEecccCC-CCCCccCccCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcC-
Confidence 35569999999999999999988742 10 01110 1123342221100 01122222221 2266666777654
Q ss_pred CCCCCCCH-HHHHHHHHHHHHHHHHHhcC
Q 014399 203 SIGASVDA-ELYGKDLINLKNIINELYKN 230 (425)
Q Consensus 203 ~~~~~~t~-~~Ya~d~~~~~~~~~~~~~~ 230 (425)
.-|| +.|.+-.+.|++.++.+..+
T Consensus 231 ----GRTplq~Y~Dfm~SFr~~F~~~~~~ 255 (531)
T PLN02161 231 ----GRTAVQCYEDFMLSFSTKFEPYIGN 255 (531)
T ss_pred ----CCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 3466 67998899999999887643
No 59
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=25.18 E-value=1.7e+02 Score=29.11 Aligned_cols=62 Identities=19% Similarity=0.188 Sum_probs=40.1
Q ss_pred CCCCcHHHHHHHHHcCCceEec-CCcccceeeeecCCCCCCCCCCcCCCCCccCccccccchhhHHHHHHHHhhcCCEEE
Q 014399 71 LDLSHPLLANAIQAFQSLRIRI-GGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVS 149 (425)
Q Consensus 71 ~~~~~~~l~~l~~~l~p~~LRi-GG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~i~~~~~d~~~~f~~~~g~~~i 149 (425)
+.|....-...++. ..-||| .||..| .|....+. -+..+.++.+.|++.|..+=
T Consensus 81 IHFd~~lAl~a~~~--v~kiRINPGNi~~--~~~~~~g~---------------------~~~~~~~vv~~ake~~ipIR 135 (359)
T PF04551_consen 81 IHFDYRLALEAIEA--VDKIRINPGNIVD--EFQEELGS---------------------IREKVKEVVEAAKERGIPIR 135 (359)
T ss_dssp ESTTCHHHHHHHHC---SEEEE-TTTSS------SS-SS----------------------HHHHHHHHHHHHHHT-EEE
T ss_pred cCCCHHHHHHHHHH--hCeEEECCCcccc--cccccccc---------------------hHHHHHHHHHHHHHCCCCEE
Confidence 44655545555555 789999 999887 34332110 13567999999999999999
Q ss_pred EEeecCCC
Q 014399 150 FGLNALHG 157 (425)
Q Consensus 150 ~~lN~~~~ 157 (425)
+|+|-++-
T Consensus 136 IGvN~GSL 143 (359)
T PF04551_consen 136 IGVNSGSL 143 (359)
T ss_dssp EEEEGGGS
T ss_pred EecccccC
Confidence 99998765
No 60
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=24.97 E-value=51 Score=26.16 Aligned_cols=14 Identities=14% Similarity=-0.071 Sum_probs=5.7
Q ss_pred HHHhhhhhhhhccc
Q 014399 9 IYLISYLPVILARD 22 (425)
Q Consensus 9 ~~~~~~~~~~~~~~ 22 (425)
++|+.+|.++|++.
T Consensus 15 ~lLlisSevaa~~~ 28 (95)
T PF07172_consen 15 ALLLISSEVAAREL 28 (95)
T ss_pred HHHHHHhhhhhHHh
Confidence 33333334444433
No 61
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.
Probab=24.90 E-value=6e+02 Score=24.09 Aligned_cols=101 Identities=15% Similarity=0.194 Sum_probs=65.1
Q ss_pred HHHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCCChHHHHHHHHHHHHcCCccceeeeeccCCCCCCCCCCCCHHHH
Q 014399 134 WDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTISMGYQIDSWEYGNELSGRTSIGASVDAELY 213 (425)
Q Consensus 134 ~d~~~~f~~~~g~~~i~~lN~~~~~~~~~~~~~~~~w~~~~A~~~~~y~~~~~~~v~~wElGNEpd~~~~~~~~~t~~~Y 213 (425)
.+.+++..++.|++..|=++-.. .++-.++++...+. .+||||=-... ..-...++++.
T Consensus 30 t~riL~lL~~~gikATFFv~g~~---------------~e~~p~lir~i~~~-----GhEIgsHg~sH-~~l~~ls~ee~ 88 (265)
T TIGR03006 30 TDRILDLLDRHGVKATFFTLGWV---------------AERYPELVRRIVAA-----GHELASHGYGH-ERVTTQTPEAF 88 (265)
T ss_pred HHHHHHHHHHcCCcEEEEEeccc---------------hhhCHHHHHHHHHc-----CCEeeeccccC-cCchhCCHHHH
Confidence 47889999999999998876321 11222344544443 57888876543 22235789999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCe-EeCCCCCC--CHHHHHHHHhhhCC
Q 014399 214 GKDLINLKNIINELYKNSSSKPT-ILAPGGFF--DQEWYAKFLQVSGS 258 (425)
Q Consensus 214 a~d~~~~~~~~~~~~~~~~~~~~-~~gp~~~~--~~~w~~~~l~~~g~ 258 (425)
.++..+..++|+++... .++ +-.|+... ...|..+.|.+.|-
T Consensus 89 ~~eI~~s~~~Le~itG~---~~~gfRaP~~s~~~~t~~a~~iL~e~Gy 133 (265)
T TIGR03006 89 RADIRRSKALLEDLSGQ---PVRGYRAPSFSIGKKNLWALDVLAEAGY 133 (265)
T ss_pred HHHHHHHHHHHHHHhCC---CceEEECCCCCCCCCcHHHHHHHHHCCC
Confidence 99999999999987432 232 33565432 33566788887763
No 62
>COG4124 ManB Beta-mannanase [Carbohydrate transport and metabolism]
Probab=24.50 E-value=5e+02 Score=25.82 Aligned_cols=114 Identities=15% Similarity=0.112 Sum_probs=63.3
Q ss_pred eeeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH--hcCCCCCCeEe-CCCCCCCHHHHHHHHhhhCCCccceEEEe
Q 014399 191 SWEYGNELSGRTSIGASVDAELYGKDLINLKNIINEL--YKNSSSKPTIL-APGGFFDQEWYAKFLQVSGSNVVNGVTHH 267 (425)
Q Consensus 191 ~wElGNEpd~~~~~~~~~t~~~Ya~d~~~~~~~~~~~--~~~~~~~~~~~-gp~~~~~~~w~~~~l~~~g~~~id~vs~H 267 (425)
+|--==|++..+-+...+++++|.+-|+.+...|++. .+. .+++ .|.+. .+..+.+-. |...+|.|.+-
T Consensus 183 y~r~~mE~n~~~FwWg~~d~~~yk~lw~~~~dy~~~~r~l~~----lk~~yspn~~--~~~~~~yYP--Gd~YVDiVGL~ 254 (355)
T COG4124 183 YWRPEMEMNSGWFWWGFWDPNQYKQLWIRLHDYLRKSRGLPW----LKFMYSPNGG--FKGLEAYYP--GDNYVDIVGLD 254 (355)
T ss_pred EechhhccCCCeeeeccCCHHHHHHHHHHHHHHHhhccCCCe----eEEEEcCCCC--cccchhcCC--CCceeeeeeee
Confidence 7877777777654556799999999999999999875 222 2333 34432 122333332 33368888887
Q ss_pred ecCCCCCCChhhhhhccChhhhhhHHHHHHHHHHHHHHhCCCCceEEeccccCc
Q 014399 268 IYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGAY 321 (425)
Q Consensus 268 ~Y~~~~g~~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~~~~~p~wl~Etns~~ 321 (425)
-|-..+ ++. .+.....++.+....-. . +..+-+||+|+.|+|..-
T Consensus 255 ~ysd~~-~n~--~~~~~~~tyaelt~~gy---~---~~~~~nKPf~faElGp~~ 299 (355)
T COG4124 255 VYSDDP-YNQ--GDTGRDKTYAELTGPGY---N---RVAGFNKPFGFAELGPEG 299 (355)
T ss_pred ccccCc-ccc--ccccccccHHHHhcCcc---h---hhhhcCCceeeecccccC
Confidence 776542 110 00011111111110001 1 111346999999999764
No 63
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=23.99 E-value=48 Score=22.57 Aligned_cols=19 Identities=26% Similarity=0.251 Sum_probs=15.6
Q ss_pred hhhHHHHHHhhhhhhhhcc
Q 014399 3 IFLSLFIYLISYLPVILAR 21 (425)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~ 21 (425)
+||++|+-+||+|.|--..
T Consensus 7 llLlfflG~ISlSlCeeEr 25 (46)
T PF03032_consen 7 LLLLFFLGTISLSLCEEER 25 (46)
T ss_pred HHHHHHHHHcccchHHHhc
Confidence 6889999999999986543
No 64
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=23.88 E-value=6.2e+02 Score=24.42 Aligned_cols=125 Identities=18% Similarity=0.174 Sum_probs=60.5
Q ss_pred ccchhhHHHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCCChHHHHHHHHHHHHcCCccceeeeeccCCCCC---CC
Q 014399 128 CLHMQRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTISMGYQIDSWEYGNELSGRT---SI 204 (425)
Q Consensus 128 ~i~~~~~d~~~~f~~~~g~~~i~~lN~~~~~~~~~~~~~~~~w~~~~A~~~~~y~~~~~~~v~~wElGNEpd~~~---~~ 204 (425)
.++.+++.++++.+.+. ..+.++.+..++. .-..+..++++.....|.++ ..|+|=|.-... ..
T Consensus 90 ~l~~~~L~~l~~~i~~~--~~~~~isi~trpd----------~l~~e~l~~L~~l~~~G~~~-~i~lGlQS~~d~~L~~i 156 (302)
T TIGR01212 90 YAPVEVLKEMYEQALSY--DDVVGLSVGTRPD----------CVPDEVLDLLAEYVERGYEV-WVELGLQTAHDKTLKKI 156 (302)
T ss_pred CCCHHHHHHHHHHHhCC--CCEEEEEEEecCC----------cCCHHHHHHHHHhhhCCceE-EEEEccCcCCHHHHHHH
Confidence 45667778888877763 3455666655431 12344455555444445433 677876654321 22
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCeEeC-CCCCCCHHHHH--HHHhhhCCCccceEEEeecCCCCC
Q 014399 205 GASVDAELYGKDLINLKNIINELYKNSSSKPTILA-PGGFFDQEWYA--KFLQVSGSNVVNGVTHHIYNLGPG 274 (425)
Q Consensus 205 ~~~~t~~~Ya~d~~~~~~~~~~~~~~~~~~~~~~g-p~~~~~~~w~~--~~l~~~g~~~id~vs~H~Y~~~~g 274 (425)
+...+.+++.+. .+.+++..-.. ..-.++| |+-. ..++.+ .++...+ +|.+++|.+..-+|
T Consensus 157 ~Rg~t~~~~~~a----i~~l~~~gi~v-~~~lI~GlPget-~e~~~~t~~~l~~l~---~d~i~i~~l~~~pg 220 (302)
T TIGR01212 157 NRGHDFACYVDA----VKRARKRGIKV-CSHVILGLPGED-REEMMETAKIVSLLD---VDGIKIHPLHVVKG 220 (302)
T ss_pred cCcChHHHHHHH----HHHHHHcCCEE-EEeEEECCCCCC-HHHHHHHHHHHHhcC---CCEEEEEEEEecCC
Confidence 333455544333 33333321000 1113455 4422 233433 3444443 67788777755444
No 65
>PF02156 Glyco_hydro_26: Glycosyl hydrolase family 26; InterPro: IPR022790 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 26 GH26 from CAZY encompasses mainly mannan endo-1,4-beta-mannosidases (3.2.1.78 from EC). Mannan endo-1,4-beta-mannosidase hydrolyses mannan and galactomannan, but displays little activity towards other plant cell wall polysaccharides []. The enzyme randomly hydrolyses 1,4-beta-D-linkages in mannans, galacto-mannans, glucomannans and galactoglucomannans. This entry also incoporates the enzyme Endogluconase H 3.2.1.4 from EC catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans. ; GO: 0008810 cellulase activity, 0016985 mannan endo-1,4-beta-mannosidase activity, 0006080 substituted mannan metabolic process; PDB: 2QHA_A 3CBW_A 2WHK_A 2VI0_A 2BVD_A 2BV9_A 2CIT_A 2V3G_A 2CIP_A 2X2Y_B ....
Probab=23.63 E-value=2.4e+02 Score=27.52 Aligned_cols=80 Identities=21% Similarity=0.277 Sum_probs=46.6
Q ss_pred HcCCccceeeeeccCCCCCC-CCC--CCCHHHHHHHHHHHHHHHHHHhcCCCCCCeEe--CCCCCCCHHHHHHHHhhhCC
Q 014399 184 SMGYQIDSWEYGNELSGRTS-IGA--SVDAELYGKDLINLKNIINELYKNSSSKPTIL--APGGFFDQEWYAKFLQVSGS 258 (425)
Q Consensus 184 ~~~~~v~~wElGNEpd~~~~-~~~--~~t~~~Ya~d~~~~~~~~~~~~~~~~~~~~~~--gp~~~~~~~w~~~~l~~~g~ 258 (425)
..+..| .|-.+.|.++.+. +|. ..+|++|.+-|+...+.|++..+- ...+. .|....+. ..++- -|.
T Consensus 148 ~~~vPV-l~Rp~HE~nG~WfwWg~~~~~~~~~y~~lwr~~~~~l~~~~g~---~Nliwvw~~~~~~~~--~~~yY--PGD 219 (311)
T PF02156_consen 148 DAGVPV-LFRPFHEMNGGWFWWGAKGHCTPEQYKALWRHMVDYLRNVKGL---HNLIWVWSPNGSRDD--AAEYY--PGD 219 (311)
T ss_dssp CTTS-E-EEEESTSTTSSSSTTSTTSTCHHHHHHHHHHHHHHHHHTTST----TSEEEEE-EBTTSSC--TCTT-----T
T ss_pred cCCCeE-EEeehhhcCCCccccCCCCCCCHHHHHHHHHHHHHHHHhccCC---ceEEEEecCCCCCCC--ccccC--CCC
Confidence 456778 9999999998652 232 246999999999999999864221 11222 23221000 01111 133
Q ss_pred CccceEEEeecCC
Q 014399 259 NVVNGVTHHIYNL 271 (425)
Q Consensus 259 ~~id~vs~H~Y~~ 271 (425)
.+||.+.+-.|..
T Consensus 220 ~yVDivG~D~Y~~ 232 (311)
T PF02156_consen 220 DYVDIVGVDVYND 232 (311)
T ss_dssp TT-SEEEEEEEES
T ss_pred CeEEEEEEeCCCC
Confidence 4799999999975
No 66
>PRK10984 DNA-binding transcriptional regulator Crl; Provisional
Probab=23.42 E-value=85 Score=26.25 Aligned_cols=31 Identities=16% Similarity=0.312 Sum_probs=26.3
Q ss_pred CCcHHHHHHHHHcCCceEecCCcccceeeeec
Q 014399 73 LSHPLLANAIQAFQSLRIRIGGSLQDQVLYDV 104 (425)
Q Consensus 73 ~~~~~l~~l~~~l~p~~LRiGG~~~D~~~~~~ 104 (425)
.++.+|+...++||| |||=+=+..|++.||=
T Consensus 7 ~~~~RLlk~f~alGP-YlRE~qc~e~~ffFDC 37 (127)
T PRK10984 7 HPKSRLIKKFTALGP-YLREGQCEENRFFFDC 37 (127)
T ss_pred CCchHHHHHHHHhCc-hhchhcccCCCEEeee
Confidence 557778888888985 9999999999999973
No 67
>PF07417 Crl: Transcriptional regulator Crl; InterPro: IPR009986 This family contains the bacterial transcriptional regulator Crl (approximately 130 residues long). This is a transcriptional regulator of the csgA curlin subunit gene for curli fibres that are found on the surface of certain bacteria [].These proteins bind to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. They also stimulate RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32.; GO: 0016987 sigma factor activity, 0045893 positive regulation of transcription, DNA-dependent, 0005737 cytoplasm; PDB: 3RPJ_A.
Probab=22.82 E-value=63 Score=26.89 Aligned_cols=30 Identities=23% Similarity=0.424 Sum_probs=22.2
Q ss_pred CCcHHHHHHHHHcCCceEecCCcccceeeee
Q 014399 73 LSHPLLANAIQAFQSLRIRIGGSLQDQVLYD 103 (425)
Q Consensus 73 ~~~~~l~~l~~~l~p~~LRiGG~~~D~~~~~ 103 (425)
.++.+|+...++||| |||=+=+..|++.||
T Consensus 5 ~~~~RLlk~f~alGP-YlRE~qc~e~~ffFD 34 (125)
T PF07417_consen 5 PTHSRLLKKFAALGP-YLREGQCQEDRFFFD 34 (125)
T ss_dssp S-HHHHHHHHHTT-T-TB-GGG-BTTEEEEE
T ss_pred CchHHHHHHHHhhCc-hhcccccccCcEeee
Confidence 456778888888885 999999999999997
No 68
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=21.61 E-value=59 Score=24.32 Aligned_cols=14 Identities=50% Similarity=1.122 Sum_probs=10.4
Q ss_pred chhhHHHHHHhhhh
Q 014399 2 GIFLSLFIYLISYL 15 (425)
Q Consensus 2 ~~~~~~~~~~~~~~ 15 (425)
|+|.+||++|+.+.
T Consensus 13 G~fA~LFv~Ll~yv 26 (71)
T PF10960_consen 13 GIFAVLFVWLLFYV 26 (71)
T ss_pred CcHHHHHHHHHHHH
Confidence 67788888877763
No 69
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=20.73 E-value=6.9e+02 Score=23.27 Aligned_cols=87 Identities=14% Similarity=0.093 Sum_probs=53.2
Q ss_pred hhHHHHHHHHhhcCCEEE-EEeecCCCCcccCCCCCCCCCChHHHHHHHHHHHHcCCccceeeeeccCCCCCCCCCCCCH
Q 014399 132 QRWDELNQLFNRTRAIVS-FGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTISMGYQIDSWEYGNELSGRTSIGASVDA 210 (425)
Q Consensus 132 ~~~d~~~~f~~~~g~~~i-~~lN~~~~~~~~~~~~~~~~w~~~~A~~~~~y~~~~~~~v~~wElGNEpd~~~~~~~~~t~ 210 (425)
..|++.++.+++.|.+-| +.+--.. +......|+...+.++.+.+.+.|..|..+.+++... + . -...++
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~~~~------~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~-~-~-~~~~d~ 86 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVDESD------ERLARLDWSKEERLSLVKAIYETGVRIPSMCLSGHRR-F-P-FGSRDP 86 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecCCcc------cccccccCCHHHHHHHHHHHHHcCCCceEEecccccC-c-C-CCCCCH
Confidence 457999999999998776 4321100 0001245777888888888889998887776654211 1 0 113455
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014399 211 ELYGKDLINLKNIINEL 227 (425)
Q Consensus 211 ~~Ya~d~~~~~~~~~~~ 227 (425)
+.+.+..+.++++|+..
T Consensus 87 ~~r~~~~~~~~~~i~~a 103 (284)
T PRK13210 87 ATRERALEIMKKAIRLA 103 (284)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555666666666544
No 70
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=20.44 E-value=2.4e+02 Score=19.91 Aligned_cols=44 Identities=16% Similarity=0.285 Sum_probs=28.2
Q ss_pred chhhHHHHHHhhhhhhhhccccceEEEEecCCCcccccCCCeeEEEec
Q 014399 2 GIFLSLFIYLISYLPVILARDVTRVTIFVDATKTVATNDEHFICATVD 49 (425)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~i~~~f~g~sie 49 (425)
|.||+|||-++.-.-...+...+...=+++.+. +--.++|.+-|
T Consensus 15 ~~lLiliis~~f~lI~~l~qq~~~y~HH~d~Ss----~KTQyvgIsTn 58 (61)
T PF06692_consen 15 GPLLILIISFVFFLITSLGQQGNTYVHHFDNSS----VKTQYVGISTN 58 (61)
T ss_pred hHHHHHHHHHHHHHHhhhccCCCeeEEeecCcc----ceeEEEEEecC
Confidence 568888888777767777777777666666442 22345555544
Done!