BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014400
(425 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GYT9|SIS3_ARATH E3 ubiquitin-protein ligase SIS3 OS=Arabidopsis thaliana GN=SIS3
PE=2 SV=2
Length = 358
Score = 540 bits (1392), Expect = e-153, Method: Compositional matrix adjust.
Identities = 271/397 (68%), Positives = 308/397 (77%), Gaps = 52/397 (13%)
Query: 1 MAIRGVDFKWYDGFFLSMLATSVIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFV 60
MA+RGVDFKWYDGFFLSMLATSVIIVA+NW RY C YPLHIWIVVDYTTVF+FR+ MFV
Sbjct: 1 MAMRGVDFKWYDGFFLSMLATSVIIVAVNWNRYRACEYPLHIWIVVDYTTVFIFRVFMFV 60
Query: 61 DNGLASGMGLDLGWQQRYARFCGRVVVLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEE 120
DNGLASG+GLD G QQR A FCGRVVVLS+LSLLLYPFLWAWT+IGT WFT ++ CLPEE
Sbjct: 61 DNGLASGLGLDFGSQQRNAMFCGRVVVLSVLSLLLYPFLWAWTVIGTQWFTKSKTCLPEE 120
Query: 121 GQKWGFLIWLLFSYCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEW 180
GQKWGFLIWL+FSYCGLLCIA + +GKWLTRRQ H +RAQQGIP+SE+G+L+DMIRVP+W
Sbjct: 121 GQKWGFLIWLMFSYCGLLCIAFICVGKWLTRRQVHLLRAQQGIPISEFGILVDMIRVPDW 180
Query: 181 AFEAAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLE 240
AFEAAGQEMRGI QD A YHPGLYLT AQ EAVEALIQELPKFRLKAVP DC EC ICLE
Sbjct: 181 AFEAAGQEMRGISQDAATYHPGLYLTPAQTEAVEALIQELPKFRLKAVPDDCGECLICLE 240
Query: 241 EFHVGNEWQADVKFYPYGFTSHKPLCKLVHALMFLKEHMSTSLFLEVLQVRGLPCAHNFH 300
EFH+G+E VRGLPCAHNFH
Sbjct: 241 EFHIGHE------------------------------------------VRGLPCAHNFH 258
Query: 301 IECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRTADSERSSASSVVTT-TRYVRTQPSS 359
+ECID+WLRLNVKCPRCRCSVFP+LDLSALSNL+++ +E+ S + T+ RY+R+QP S
Sbjct: 259 VECIDQWLRLNVKCPRCRCSVFPDLDLSALSNLQSSGTEQHSQVNTETSEARYIRSQPQS 318
Query: 360 QSYLVRMQGLLSPVHMGNTRLPNDTDIALQTVENGGV 396
+SY +R+Q L+ PVH TD AL+T ENGGV
Sbjct: 319 ESYFLRVQSLIHPVH---------TDTALETAENGGV 346
>sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana
GN=At1g12760 PE=2 SV=1
Length = 408
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 14/128 (10%)
Query: 203 LYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEWQADVKFYPYGFTSH 262
LY A Q A + I++L KF+ + + D ++ H +E Q + +
Sbjct: 289 LYAVADQEGASKEDIEQLTKFKFRKL-GDANK--------HTNDEAQGTTEGIMTECGTD 339
Query: 263 KPLCKLVHALMFLKEH--MSTSLFLEVLQVRGLPCAHNFHIECIDEWLRLNVKCPRCRCS 320
P+ H L+ + S + + ++R LPC H+FH C+D+WL +N CP C+ +
Sbjct: 340 SPI---EHTLLQEDAECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYINATCPLCKYN 396
Query: 321 VFPNLDLS 328
+ + +L
Sbjct: 397 ILKSSNLD 404
>sp|Q9FKX5|NIPL1_ARATH NEP1-interacting protein-like 1 OS=Arabidopsis thaliana GN=ATL27
PE=2 SV=1
Length = 221
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 49/139 (35%), Gaps = 43/139 (30%)
Query: 181 AFEAAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLE 240
A +A Q G + H ++ TA + + +PK R+ + C +CL+
Sbjct: 122 AMLSAVQSQMGAVESQFQDHTDIFDTAISKGLTGDSLNRIPKVRITDTSPEIVSCSVCLQ 181
Query: 241 EFHVGNEWQADVKFYPYGFTSHKPLCKLVHALMFLKEHMSTSLFLEVLQVRGLP-CAHNF 299
+F VG VR LP C H F
Sbjct: 182 DFQVGE------------------------------------------TVRSLPHCHHMF 199
Query: 300 HIECIDEWLRLNVKCPRCR 318
H+ CID+WLR + CP CR
Sbjct: 200 HLPCIDKWLRRHASCPLCR 218
>sp|Q9C1X4|YKW3_SCHPO Uncharacterized RING finger protein P32A8.03c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAP32A8.03c PE=4 SV=1
Length = 513
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 6/125 (4%)
Query: 274 FLKEHMSTSLFLEVLQVRG----LPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLSA 329
+ E ++ +E+ ++ LPC H FH CI WLR+N C CR V PN
Sbjct: 389 LIDEEGECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICRAPVDPNSQQRN 448
Query: 330 LSNLRTADSERSS--ASSVVTTTRYVRTQPSSQSYLVRMQGLLSPVHMGNTRLPNDTDIA 387
++ +A+ S A+ +TT ++S+ Q LS H ++R P D +
Sbjct: 449 NTSTDSANGHNPSNHANPSTSTTNDQGATLRNESFNAASQSNLSSEHGHSSRTPMDDFVD 508
Query: 388 LQTVE 392
+ +E
Sbjct: 509 EEPLE 513
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 284 FLEVLQVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 322
+ E ++R LPC+H +HI CID WL N CP CR +V
Sbjct: 575 YTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICRRAVL 613
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 284 FLEVLQVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 322
+ E ++R LPC+H +HI CID WL N CP CR +V
Sbjct: 710 YTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICRRAVL 748
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 284 FLEVLQVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 322
+ E ++R LPC+H +H+ CID WL N CP CR +V
Sbjct: 592 YTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVL 630
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 237 ICLEEFHVGNEWQADVKFYPYGFTSHKPLCKLVHALMFLKEHMST-----SLFLEVLQVR 291
+ L +F + NE D + P G T + + L + + T + + E ++R
Sbjct: 505 LSLAQFFLLNE---DDEDQPRGLTKEQ-IDNLAMRSFGENDALKTCSVCITEYTEGNKLR 560
Query: 292 GLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 322
LPC+H +H+ CID WL N CP CR +V
Sbjct: 561 KLPCSHEYHVHCIDRWLSENSTCPICRRAVL 591
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 284 FLEVLQVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 322
+ E ++R LPC+H +H+ CID WL N CP CR +V
Sbjct: 577 YTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVL 615
>sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana
GN=At4g11680 PE=2 SV=1
Length = 390
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 55/137 (40%), Gaps = 41/137 (29%)
Query: 203 LYLTAAQREAVEALIQELPKFRL-------------KAVPTDCSECPICLEEFHVGNEWQ 249
LY A Q A + I ++PKFR + + T+C G +
Sbjct: 279 LYAVADQEGASKNDIDQMPKFRFTKTGNVEKLSGKARGIMTEC------------GTDSP 326
Query: 250 ADVKFYPYGFTSHKPLCKLVHALMFLKEHMSTSLFLEVLQVRGLPCAHNFHIECIDEWLR 309
+ P LC+ + + +++R LPC H+FH CID+WL
Sbjct: 327 IERSLSPEDAECCICLCE----------------YEDGVELRELPCNHHFHCTCIDKWLH 370
Query: 310 LNVKCPRCRCSVFPNLD 326
+N +CP C+ ++ N +
Sbjct: 371 INSRCPLCKFNILKNAN 387
>sp|Q9SL78|ATL12_ARATH Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana
GN=ATL12 PE=3 SV=1
Length = 390
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 282 SLFLEVLQVRGLP-CAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRTA 336
S F +V +R LP C H FHI CID+WL + CP CR V DLS L N T+
Sbjct: 129 SKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRNRVNIEDDLSVLGNSSTS 184
>sp|Q9SN28|ATL7_ARATH RING-H2 finger protein ATL7 OS=Arabidopsis thaliana GN=ATL7 PE=2
SV=1
Length = 236
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 295 CAHNFHIECIDEWLRLNVKCPRCRCSVF--PNLDLSALSNLRTADSERSSASSVVTTTRY 352
C H FH+ECID WL + CP CR S+ P+LDLS S + E S+
Sbjct: 130 CGHTFHMECIDLWLTSHTTCPLCRLSLIPKPSLDLSHQSTEIVSSIENSNGGE------- 182
Query: 353 VRTQPSSQS 361
TQP SQS
Sbjct: 183 ASTQPDSQS 191
>sp|Q8RX29|ATL70_ARATH RING-H2 finger protein ATL70 OS=Arabidopsis thaliana GN=ATL70 PE=2
SV=1
Length = 217
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 290 VRGLP-CAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRTADSERSSASSVVT 348
+R LP C H FH++CID WLRLN CP CR S P + L T +E +S V
Sbjct: 160 LRQLPDCNHLFHLKCIDTWLRLNPTCPVCRTSPLP-------TPLSTPLAEVVPLASSVA 212
Query: 349 TTR 351
TR
Sbjct: 213 ATR 215
>sp|Q9M0R4|ATL37_ARATH Putative RING-H2 finger protein ATL37 OS=Arabidopsis thaliana
GN=ATL37 PE=3 SV=1
Length = 357
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 48/101 (47%), Gaps = 18/101 (17%)
Query: 294 PCAHNFHIECIDEWLRLNVKCPRCRCSV---------FPNLDL---SALSNLRTADSERS 341
PC+H FH CIDEWL CP CR ++ P++D+ +A ++ + ERS
Sbjct: 138 PCSHTFHANCIDEWLSSRSTCPVCRANLSLKSGDSFPHPSMDVETGNAQRGVQESPDERS 197
Query: 342 -SASSVVTTTRYVRTQPSSQSYLVRMQGLLSPVHMGNTRLP 381
+ SSV T P S+S GLLS H+ LP
Sbjct: 198 LTGSSVTCNNNANYTTPRSRST-----GLLSSWHVPELFLP 233
>sp|Q67YI6|ATL65_ARATH RING-H2 finger protein ATL65 OS=Arabidopsis thaliana GN=ATL65 PE=2
SV=2
Length = 411
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 284 FLEVLQVRGLP-CAHNFHIECIDEWLRLNVKCPRCRCSV 321
F E VR LP C H FH+ECIDEWLR + CP CR ++
Sbjct: 163 FEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLCRTAI 201
>sp|Q8LDB8|RING2_ARATH E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana
GN=At1g63170 PE=2 SV=2
Length = 381
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 12/124 (9%)
Query: 203 LYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEWQADVKFYPYGFTSH 262
LY A Q A + I +L KF+ + V ++ + Q D +
Sbjct: 259 LYAVAEQEGASKEDIDQLTKFKFRKVGDT-------MKHTVDEEQGQGDSGGVMTECGTD 311
Query: 263 KPLCKLVHALMFLKEH--MSTSLFLEVLQVRGLPCAHNFHIECIDEWLRLNVKCPRCRCS 320
P+ HAL + S + + ++R LPC H+FH C+D+WL +N CP C+ +
Sbjct: 312 SPV---EHALPHEDAECCICLSAYEDETELRELPCGHHFHCGCVDKWLYINATCPLCKYN 368
Query: 321 VFPN 324
+ +
Sbjct: 369 ILKS 372
>sp|Q9DBU5|RNF6_MOUSE E3 ubiquitin-protein ligase RNF6 OS=Mus musculus GN=Rnf6 PE=1 SV=1
Length = 667
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 24/41 (58%)
Query: 282 SLFLEVLQVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 322
S ++ ++R LPC H FHI CID WL N CP CR V
Sbjct: 619 SDYVAGNKLRQLPCLHEFHIHCIDRWLSENCTCPVCRRPVL 659
>sp|Q570X5|ATL58_ARATH RING-H2 finger protein ATL58 OS=Arabidopsis thaliana GN=ATL58 PE=2
SV=1
Length = 261
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 17/113 (15%)
Query: 295 CAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRTADSERSSASSVVTTTRYVR 354
C H FH++CID WL + CP CR ++ P+ R+ S+ S+V+ V
Sbjct: 119 CKHTFHMDCIDLWLTSHTTCPLCRLALIPS---------RSRQSQDDPVPSLVSPDEEVS 169
Query: 355 TQPSSQSY---LVRMQGLLSPV-HMGNTRLPNDTDIALQTVENGGVLSATQNR 403
+QP S+ +V Q PV H G + P + V + GV S +++
Sbjct: 170 SQPESEPVNHRVVSTQPESEPVNHSGVSSQPESQPV----VNHRGVSSQPESQ 218
>sp|Q9Y252|RNF6_HUMAN E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens GN=RNF6 PE=1 SV=1
Length = 685
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 24/41 (58%)
Query: 282 SLFLEVLQVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 322
S ++ ++R LPC H FHI CID WL N CP CR V
Sbjct: 637 SDYVTGNKLRQLPCMHEFHIHCIDRWLSENCTCPICRQPVL 677
>sp|Q6NRV8|R111B_XENLA E3 ubiquitin-protein ligase arkadia-B OS=Xenopus laevis GN=rnf111-b
PE=2 SV=1
Length = 959
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 24/40 (60%)
Query: 282 SLFLEVLQVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 321
S+ E VR LPC H FH C+D+WL N KCP CR +
Sbjct: 912 SILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 951
>sp|Q9FL07|ATL46_ARATH RING-H2 finger protein ATL46 OS=Arabidopsis thaliana GN=ATL46 PE=2
SV=1
Length = 376
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 23/128 (17%)
Query: 284 FLEVLQVRGLP-CAHNFHIECIDEWLRLNVKCPRCRCSVF--------PNLDLSALSNLR 334
F E ++R LP C+H FH+ CID WL+ N CP CR ++F P D +
Sbjct: 150 FSEKDKLRLLPMCSHAFHLNCIDTWLQSNSTCPLCRGTLFSPGFSMENPMFDFDDIREDE 209
Query: 335 TADSERSSASSVVTTTRYVRTQPSSQSYLVRMQGLLSPVHMGN-TRLPNDTDIALQTVEN 393
+E S ++ +V +G+L PV +G RL N + Q V
Sbjct: 210 EGVTENGSQKTMEIQE------------IVVEKGVL-PVRLGKFKRLDNVGNGQGQDVVA 256
Query: 394 GGVLSATQ 401
GG S++
Sbjct: 257 GGETSSSN 264
>sp|Q0V9R0|RN111_XENTR E3 ubiquitin-protein ligase arkadia OS=Xenopus tropicalis GN=rnf111
PE=2 SV=1
Length = 954
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 24/40 (60%)
Query: 282 SLFLEVLQVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 321
S+ E VR LPC H FH C+D+WL N KCP CR +
Sbjct: 907 SILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 946
>sp|Q90ZT7|R111A_XENLA E3 ubiquitin-protein ligase arkadia-A (Fragment) OS=Xenopus laevis
GN=rnf111-a PE=2 SV=1
Length = 923
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 24/40 (60%)
Query: 282 SLFLEVLQVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 321
S+ E VR LPC H FH C+D+WL N KCP CR +
Sbjct: 876 SILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 915
>sp|Q66J97|R111C_XENLA E3 ubiquitin-protein ligase arkadia-C OS=Xenopus laevis GN=rnf111-c
PE=2 SV=1
Length = 967
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 24/40 (60%)
Query: 282 SLFLEVLQVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 321
S+ E VR LPC H FH C+D+WL N KCP CR +
Sbjct: 920 SILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 959
>sp|Q99ML9|RN111_MOUSE E3 ubiquitin-protein ligase Arkadia OS=Mus musculus GN=Rnf111 PE=1
SV=1
Length = 989
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 24/40 (60%)
Query: 282 SLFLEVLQVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 321
S+ E VR LPC H FH C+D+WL N KCP CR +
Sbjct: 942 SILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 981
>sp|Q6ZNA4|RN111_HUMAN E3 ubiquitin-protein ligase Arkadia OS=Homo sapiens GN=RNF111 PE=1
SV=3
Length = 994
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 24/40 (60%)
Query: 282 SLFLEVLQVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 321
S+ E VR LPC H FH C+D+WL N KCP CR +
Sbjct: 947 SILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 986
>sp|Q5R476|RN111_PONAB E3 ubiquitin-protein ligase Arkadia OS=Pongo abelii GN=RNF111 PE=2
SV=1
Length = 986
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 24/40 (60%)
Query: 282 SLFLEVLQVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 321
S+ E VR LPC H FH C+D+WL N KCP CR +
Sbjct: 939 SILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 978
>sp|P0C034|ATL10_ARATH RING-H2 finger protein ATL10 OS=Arabidopsis thaliana GN=ATL10 PE=2
SV=1
Length = 251
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 282 SLFLEVLQVRGLP-CAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRTADSER 340
S F+ Q+R LP C H FH+ CID+WL+ ++ CP+CR + L + ADS
Sbjct: 140 SDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKCRNCLVETCQ-KILGDFSQADSVT 198
Query: 341 SSASSVVTTT 350
+ + +V T
Sbjct: 199 AEPTEIVIVT 208
>sp|Q9FL42|ATL69_ARATH Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana
GN=ATL69 PE=3 SV=1
Length = 159
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 290 VRGLP-CAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLSALSNL 333
VR +P C H FH +C+DEWLR + CP CR S P+ + LS+L
Sbjct: 107 VRCIPECNHCFHTDCVDEWLRTSATCPLCRNSPAPSRLATPLSDL 151
>sp|Q3UHJ8|RNF44_MOUSE RING finger protein 44 OS=Mus musculus GN=Rnf44 PE=2 SV=1
Length = 407
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 285 LEVLQV-RGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 321
EV Q+ R LPC H FH +C+D+WL+ N CP CR
Sbjct: 362 FEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADA 399
>sp|Q7L0R7|RNF44_HUMAN RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1
Length = 432
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 321
+R LPC H FH +C+D+WL+ N CP CR
Sbjct: 393 LRVLPCNHEFHTKCVDKWLKANRTCPICRADA 424
>sp|Q4V7B8|RNF44_RAT RING finger protein 44 OS=Rattus norvegicus GN=Rnf44 PE=2 SV=1
Length = 350
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 285 LEVLQV-RGLPCAHNFHIECIDEWLRLNVKCPRCR 318
EV Q+ R LPC H FH +C+D+WL+ N CP CR
Sbjct: 305 FEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 339
>sp|Q94BY6|ATL75_ARATH RING-H2 finger protein ATL75 OS=Arabidopsis thaliana GN=ATL75 PE=2
SV=1
Length = 226
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 282 SLFLEVLQVRGLP-CAHNFHIECIDEWLRLNVKCPRCR 318
S F+ Q+R LP C H FH+ CID+WL+ ++ CP+CR
Sbjct: 141 SDFVSGEQIRMLPKCHHGFHVRCIDKWLQQHLTCPKCR 178
>sp|Q5XF85|ATL42_ARATH E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana GN=ATL42
PE=1 SV=2
Length = 432
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 282 SLFLEVLQVRGLP-CAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLSALSN 332
S F V +R LP C H FHI CID+WL + CP CR V D S L+N
Sbjct: 128 SKFESVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRDRVSMEEDSSVLTN 179
>sp|Q9SN27|ATL59_ARATH E3 ubiquitin-protein ligase ATL59 OS=Arabidopsis thaliana GN=ATL59
PE=1 SV=1
Length = 225
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 295 CAHNFHIECIDEWLRLNVKCPRCRCSVF--PNLDLSALSNLRTADSERSSASSVVTTTRY 352
C H FH+ECID WL + CP CR S+ P++DLS S + E ++
Sbjct: 116 CGHTFHMECIDLWLTSHTTCPLCRLSLIPKPSVDLSHQSIEIVSSIENTNGGE------- 168
Query: 353 VRTQPSSQS 361
TQP SQS
Sbjct: 169 ASTQPDSQS 177
>sp|Q8GW38|ATL47_ARATH RING-H2 finger protein ATL47 OS=Arabidopsis thaliana GN=ATL47 PE=2
SV=1
Length = 369
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 284 FLEVLQVRGLP-CAHNFHIECIDEWLRLNVKCPRCRCSVF 322
F E ++R LP C+H FHI+CID WL N CP CR ++F
Sbjct: 151 FSEDDKLRLLPNCSHAFHIDCIDTWLLSNSTCPLCRGTLF 190
>sp|Q9H0F5|RNF38_HUMAN RING finger protein 38 OS=Homo sapiens GN=RNF38 PE=1 SV=4
Length = 515
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCR 318
+R LPC H FH +C+D+WL+ N CP CR
Sbjct: 476 LRVLPCNHEFHAKCVDKWLKANRTCPICR 504
>sp|Q08CG8|RNF44_DANRE RING finger protein 44 OS=Danio rerio GN=rnf44 PE=2 SV=1
Length = 448
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCR 318
+R LPC H FH +C+D+WL+ N CP CR
Sbjct: 409 LRVLPCNHEFHAKCVDKWLKTNRTCPICR 437
>sp|Q9M313|ATL68_ARATH RING-H2 finger protein ATL68 OS=Arabidopsis thaliana GN=ATL68 PE=2
SV=1
Length = 212
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 284 FLEVLQVRGLP-CAHNFHIECIDEWLRLNVKCPRCRCSVFPN 324
++E +R +P C H FH+ C+D WL+LN CP CR S P
Sbjct: 143 YMEEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPT 184
>sp|Q6NML0|ATL76_ARATH E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana GN=ATL76
PE=1 SV=1
Length = 225
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 282 SLFLEVLQVRGLP-CAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRTADSER 340
S F+ Q+R LP C H FH+ CID+WL+ ++ CP+CR + L + AD
Sbjct: 140 SDFVSGEQLRLLPKCNHGFHVRCIDKWLQHHLTCPKCRHCLVETCQ-KILGDFSQAD--- 195
Query: 341 SSASSVVTTTRYVRTQP 357
S +S T + VR P
Sbjct: 196 -SMASTPTESVIVRIDP 211
>sp|Q5SPX3|RN215_MOUSE RING finger protein 215 OS=Mus musculus GN=Rnf215 PE=2 SV=1
Length = 379
Score = 45.4 bits (106), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 324
+R LPC H FH +C+D WL L CP C+ +V N
Sbjct: 340 LRVLPCKHEFHRDCVDPWLMLQQTCPLCKFNVLGN 374
>sp|Q9Y6U7|RN215_HUMAN RING finger protein 215 OS=Homo sapiens GN=RNF215 PE=2 SV=2
Length = 377
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 324
+R LPC H FH +C+D WL L CP C+ +V N
Sbjct: 338 LRVLPCKHEFHRDCVDPWLMLQQTCPLCKFNVLGN 372
>sp|Q9FG21|ATL71_ARATH Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana
GN=ATL71 PE=3 SV=1
Length = 197
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 290 VRGLP-CAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLSALSNL 333
+R LP C H FH C+D WLRL+ CP CR S P+ ++ ++++
Sbjct: 142 IRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADV 186
>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1
Length = 346
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 282 SLFLEVLQVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 321
S+ + VR LPC H FH C+D+WL ++ KCP CR +
Sbjct: 299 SMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVDI 338
>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1
Length = 347
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 282 SLFLEVLQVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 321
S+ + VR LPC H FH C+D+WL ++ KCP CR +
Sbjct: 300 SMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVDI 339
>sp|Q9LT17|BBR_ARATH E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana
GN=BBR PE=2 SV=1
Length = 340
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 293 LPCAHNFHIECIDEWLRLNVKCPRCRCSV 321
LPC H++H ECI+ WL++N CP C V
Sbjct: 304 LPCKHSYHSECINNWLKINKVCPVCSAEV 332
>sp|Q9FIR0|ATL30_ARATH RING-H2 finger protein ATL30 OS=Arabidopsis thaliana GN=ATL30 PE=2
SV=1
Length = 289
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 17/70 (24%)
Query: 295 CAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLR-------------TADSERS 341
C H FH ECID+WL N CP CR NLD +A N++ D E++
Sbjct: 134 CYHVFHQECIDQWLESNKTCPVCRR----NLDPNAPENIKELIIEVIQENAHENRDQEQT 189
Query: 342 SASSVVTTTR 351
S S+ V +R
Sbjct: 190 STSNEVMLSR 199
>sp|P93823|ATL1_ARATH RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2
SV=1
Length = 381
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 284 FLEVLQVRGLP-CAHNFHIECIDEWLRLNVKCPRCRCSV 321
F E ++R +P C H FHI+CID WL+ N CP CR SV
Sbjct: 141 FQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSV 179
>sp|Q9FHG8|ATL50_ARATH Putative RING-H2 finger protein ATL50 OS=Arabidopsis thaliana
GN=ATL50 PE=3 SV=1
Length = 210
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 289 QVRGLP-CAHNFHIECIDEWLRLNVKCPRCR 318
++R LP C+H FH+ECID WL N CP CR
Sbjct: 134 ELRLLPKCSHAFHVECIDTWLLTNSTCPLCR 164
>sp|O22755|ATL44_ARATH RING-H2 finger protein ATL44 OS=Arabidopsis thaliana GN=ATL44 PE=2
SV=1
Length = 185
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 284 FLEVLQVRGLP-CAHNFHIECIDEWLRLNVKCPRCR 318
F + ++R LP C H+FH+ECID+WL CP CR
Sbjct: 109 FADGEEIRVLPLCGHSFHVECIDKWLVSRSSCPSCR 144
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.138 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 156,500,928
Number of Sequences: 539616
Number of extensions: 6350206
Number of successful extensions: 17234
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 16791
Number of HSP's gapped (non-prelim): 492
length of query: 425
length of database: 191,569,459
effective HSP length: 120
effective length of query: 305
effective length of database: 126,815,539
effective search space: 38678739395
effective search space used: 38678739395
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 63 (28.9 bits)