Query 014400
Match_columns 425
No_of_seqs 430 out of 2032
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 04:46:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014400.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014400hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1734 Predicted RING-contain 100.0 3.9E-32 8.4E-37 259.2 -1.0 212 15-323 56-282 (328)
2 COG5243 HRD1 HRD ubiquitin lig 99.7 3.4E-17 7.4E-22 162.9 10.3 83 208-323 263-346 (491)
3 KOG4628 Predicted E3 ubiquitin 99.7 5.8E-16 1.3E-20 155.6 12.1 76 212-329 207-285 (348)
4 KOG0828 Predicted E3 ubiquitin 99.5 2.7E-14 5.8E-19 146.6 8.4 180 48-323 453-635 (636)
5 PF13639 zf-RING_2: Ring finge 99.5 6.5E-15 1.4E-19 106.0 2.2 29 290-318 16-44 (44)
6 PF12678 zf-rbx1: RING-H2 zinc 99.3 1.8E-12 4E-17 103.6 4.0 29 290-318 45-73 (73)
7 COG5540 RING-finger-containing 99.2 3.1E-12 6.6E-17 125.1 3.0 35 290-324 339-374 (374)
8 PHA02929 N1R/p28-like protein; 99.2 1.8E-11 3.9E-16 118.3 4.2 73 213-322 151-227 (238)
9 KOG0802 E3 ubiquitin ligase [P 99.1 1.5E-10 3.3E-15 124.4 5.6 68 216-323 273-342 (543)
10 KOG0317 Predicted E3 ubiquitin 99.0 1.9E-10 4.1E-15 112.4 2.9 36 290-325 252-287 (293)
11 PLN03208 E3 ubiquitin-protein 98.9 1.1E-09 2.3E-14 102.4 6.0 36 290-325 31-82 (193)
12 PF13920 zf-C3HC4_3: Zinc fing 98.9 1.1E-09 2.3E-14 81.0 3.0 33 290-322 15-48 (50)
13 cd00162 RING RING-finger (Real 98.9 1.2E-09 2.7E-14 76.6 3.1 32 290-321 13-45 (45)
14 PF13923 zf-C3HC4_2: Zinc fing 98.8 3.5E-09 7.7E-14 74.3 2.5 28 290-317 12-39 (39)
15 KOG0823 Predicted E3 ubiquitin 98.7 1.2E-08 2.6E-13 97.2 5.2 39 290-328 60-101 (230)
16 PF12861 zf-Apc11: Anaphase-pr 98.7 8.5E-09 1.9E-13 84.4 3.3 32 290-321 47-81 (85)
17 smart00184 RING Ring finger. E 98.7 1.6E-08 3.4E-13 68.5 2.9 28 290-317 11-39 (39)
18 smart00504 Ubox Modified RING 98.7 1.7E-08 3.8E-13 77.2 3.4 33 290-322 14-46 (63)
19 KOG0320 Predicted E3 ubiquitin 98.6 1.6E-08 3.4E-13 92.9 3.0 34 290-323 146-179 (187)
20 PF15227 zf-C3HC4_4: zinc fing 98.6 1.7E-08 3.7E-13 72.3 2.5 28 290-317 11-42 (42)
21 PF00097 zf-C3HC4: Zinc finger 98.6 2.9E-08 6.2E-13 70.0 2.5 28 290-317 12-41 (41)
22 PHA02926 zinc finger-like prot 98.5 3.6E-08 7.7E-13 93.6 2.8 33 290-322 192-230 (242)
23 PF14634 zf-RING_5: zinc-RING 98.5 4.9E-08 1.1E-12 70.4 2.8 30 290-319 15-44 (44)
24 COG5194 APC11 Component of SCF 98.5 4.6E-08 1E-12 78.6 2.7 28 294-321 53-80 (88)
25 COG5574 PEX10 RING-finger-cont 98.5 7.2E-08 1.6E-12 93.5 2.4 37 290-326 228-266 (271)
26 TIGR00599 rad18 DNA repair pro 98.4 1.3E-07 2.7E-12 97.8 2.9 34 290-323 39-72 (397)
27 KOG2930 SCF ubiquitin ligase, 98.3 1.4E-07 3E-12 79.3 0.4 34 287-320 72-106 (114)
28 PF13445 zf-RING_UBOX: RING-ty 98.2 9E-07 1.9E-11 63.8 2.2 26 290-315 14-43 (43)
29 KOG1493 Anaphase-promoting com 98.2 6.8E-07 1.5E-11 71.4 1.3 27 295-321 51-80 (84)
30 PF04564 U-box: U-box domain; 98.1 1.2E-06 2.6E-11 69.9 2.6 34 290-323 17-51 (73)
31 smart00744 RINGv The RING-vari 98.1 2.7E-06 5.8E-11 63.0 2.8 29 290-318 14-49 (49)
32 KOG2164 Predicted E3 ubiquitin 98.0 2E-06 4.3E-11 90.1 2.4 35 290-324 199-238 (513)
33 KOG0287 Postreplication repair 98.0 1.7E-06 3.7E-11 86.4 1.3 33 290-322 36-68 (442)
34 COG5219 Uncharacterized conser 97.9 2.8E-06 6.2E-11 93.7 0.8 28 295-322 1494-1523(1525)
35 TIGR00570 cdk7 CDK-activating 97.9 8.3E-06 1.8E-10 81.6 3.3 31 294-324 25-56 (309)
36 KOG2177 Predicted E3 ubiquitin 97.9 5E-06 1.1E-10 79.2 1.3 30 290-319 26-55 (386)
37 PF11793 FANCL_C: FANCL C-term 97.9 2.6E-06 5.7E-11 67.6 -0.5 29 294-322 27-66 (70)
38 KOG0804 Cytoplasmic Zn-finger 97.8 6.9E-06 1.5E-10 84.8 2.2 32 290-323 192-223 (493)
39 COG5432 RAD18 RING-finger-cont 97.8 7.4E-06 1.6E-10 80.5 2.0 32 290-321 38-69 (391)
40 KOG0827 Predicted E3 ubiquitin 97.7 1.6E-05 3.5E-10 80.8 1.7 29 295-323 26-57 (465)
41 KOG4265 Predicted E3 ubiquitin 97.6 3.1E-05 6.6E-10 78.3 2.9 39 290-328 303-342 (349)
42 KOG0824 Predicted E3 ubiquitin 97.5 3.7E-05 8E-10 76.1 1.7 36 290-325 20-56 (324)
43 KOG1785 Tyrosine kinase negati 97.5 0.00028 6E-09 72.2 7.2 35 290-324 382-418 (563)
44 KOG0311 Predicted E3 ubiquitin 97.4 2.9E-05 6.3E-10 78.3 -0.6 38 290-327 56-95 (381)
45 KOG1645 RING-finger-containing 97.4 0.00011 2.5E-09 75.2 3.1 32 290-321 22-55 (463)
46 KOG1941 Acetylcholine receptor 97.3 0.0001 2.2E-09 75.2 2.1 29 290-318 382-412 (518)
47 KOG0825 PHD Zn-finger protein 97.2 8.5E-05 1.8E-09 81.1 -0.5 35 287-321 136-170 (1134)
48 KOG1039 Predicted E3 ubiquitin 97.1 0.00021 4.5E-09 73.0 1.7 30 292-321 183-220 (344)
49 KOG4172 Predicted E3 ubiquitin 97.0 0.0002 4.3E-09 54.0 0.1 30 293-322 23-54 (62)
50 KOG4159 Predicted E3 ubiquitin 96.8 0.00077 1.7E-08 70.1 2.6 34 290-323 97-130 (398)
51 PF14835 zf-RING_6: zf-RING of 96.8 0.0004 8.7E-09 54.1 0.3 31 290-322 21-51 (65)
52 KOG4445 Uncharacterized conser 96.6 0.00081 1.8E-08 66.7 1.4 50 232-323 115-187 (368)
53 KOG0978 E3 ubiquitin ligase in 96.6 0.00059 1.3E-08 74.9 0.2 36 290-325 656-692 (698)
54 KOG1428 Inhibitor of type V ad 96.4 0.0019 4.1E-08 74.5 2.5 33 290-322 3502-3544(3738)
55 KOG0297 TNF receptor-associate 96.4 0.0015 3.2E-08 68.1 1.5 35 293-327 38-72 (391)
56 PF11789 zf-Nse: Zinc-finger o 96.3 0.0016 3.5E-08 49.7 1.3 27 290-316 25-53 (57)
57 PF05883 Baculo_RING: Baculovi 96.2 0.002 4.4E-08 57.3 1.1 29 290-318 42-76 (134)
58 KOG2879 Predicted E3 ubiquitin 96.2 0.0042 9.2E-08 61.1 3.4 36 290-325 253-290 (298)
59 KOG1002 Nucleotide excision re 96.0 0.0029 6.2E-08 67.0 1.5 41 290-330 549-594 (791)
60 KOG3970 Predicted E3 ubiquitin 96.0 0.0067 1.4E-07 58.2 3.7 38 290-327 65-110 (299)
61 KOG2114 Vacuolar assembly/sort 95.9 0.005 1.1E-07 68.4 2.7 31 290-323 854-884 (933)
62 KOG0801 Predicted E3 ubiquitin 95.6 0.0044 9.5E-08 56.6 1.0 18 230-247 175-192 (205)
63 KOG1814 Predicted E3 ubiquitin 95.5 0.0053 1.2E-07 63.4 1.0 30 290-319 200-237 (445)
64 PF10367 Vps39_2: Vacuolar sor 95.3 0.0083 1.8E-07 50.2 1.5 16 290-305 93-108 (109)
65 KOG4692 Predicted E3 ubiquitin 95.2 0.019 4.2E-07 58.3 4.0 74 205-323 390-468 (489)
66 COG5152 Uncharacterized conser 95.1 0.0069 1.5E-07 57.1 0.6 32 290-321 209-240 (259)
67 PHA03096 p28-like protein; Pro 95.0 0.0094 2E-07 59.6 1.3 29 290-318 198-230 (284)
68 KOG1813 Predicted E3 ubiquitin 95.0 0.01 2.3E-07 58.9 1.4 33 290-322 254-286 (313)
69 KOG2660 Locus-specific chromos 94.6 0.011 2.4E-07 59.6 0.4 30 293-322 32-61 (331)
70 PHA02862 5L protein; Provision 94.5 0.023 4.9E-07 51.2 2.1 27 297-323 26-54 (156)
71 KOG1571 Predicted E3 ubiquitin 94.4 0.019 4E-07 58.6 1.6 30 290-322 318-347 (355)
72 PHA02825 LAP/PHD finger-like p 94.3 0.03 6.6E-07 51.2 2.7 26 298-323 33-60 (162)
73 KOG1952 Transcription factor N 94.3 0.017 3.6E-07 64.4 1.0 24 295-318 213-243 (950)
74 KOG4275 Predicted E3 ubiquitin 94.3 0.014 3.1E-07 57.9 0.4 29 290-322 313-342 (350)
75 PF12906 RINGv: RING-variant d 94.2 0.032 7E-07 40.8 2.1 28 290-317 13-47 (47)
76 PF14570 zf-RING_4: RING/Ubox 94.2 0.029 6.3E-07 41.5 1.9 29 293-321 18-47 (48)
77 KOG1940 Zn-finger protein [Gen 94.0 0.024 5.2E-07 56.3 1.5 30 290-319 175-204 (276)
78 KOG0827 Predicted E3 ubiquitin 93.7 0.0055 1.2E-07 62.8 -3.7 35 290-324 213-247 (465)
79 KOG4185 Predicted E3 ubiquitin 93.4 0.044 9.4E-07 54.5 2.1 32 290-321 22-54 (296)
80 COG5175 MOT2 Transcriptional r 93.3 0.053 1.2E-06 55.0 2.5 53 230-323 12-65 (480)
81 COG5222 Uncharacterized conser 93.3 0.049 1.1E-06 54.3 2.1 30 290-319 287-318 (427)
82 KOG3268 Predicted E3 ubiquitin 92.2 0.069 1.5E-06 49.7 1.5 30 293-322 188-228 (234)
83 KOG3039 Uncharacterized conser 91.9 0.14 3E-06 50.0 3.2 36 290-325 238-273 (303)
84 COG5236 Uncharacterized conser 91.4 0.16 3.4E-06 51.8 3.1 31 290-320 74-106 (493)
85 KOG2817 Predicted E3 ubiquitin 91.3 0.14 3.1E-06 52.9 2.7 29 290-318 350-381 (394)
86 PF10272 Tmpp129: Putative tra 90.8 0.38 8.3E-06 49.7 5.3 27 295-321 311-350 (358)
87 PF04641 Rtf2: Rtf2 RING-finge 90.8 0.22 4.9E-06 49.0 3.5 32 290-322 130-161 (260)
88 PF07800 DUF1644: Protein of u 90.6 0.26 5.6E-06 45.2 3.4 20 313-332 82-101 (162)
89 KOG4739 Uncharacterized protei 90.4 0.1 2.2E-06 50.7 0.8 30 290-321 18-47 (233)
90 KOG2932 E3 ubiquitin ligase in 90.4 0.11 2.5E-06 52.1 1.0 30 290-321 104-133 (389)
91 KOG1001 Helicase-like transcri 90.3 0.12 2.6E-06 57.6 1.2 34 290-323 466-501 (674)
92 PF14447 Prok-RING_4: Prokaryo 89.5 0.17 3.7E-06 38.4 1.1 34 289-324 19-52 (55)
93 KOG0802 E3 ubiquitin ligase [P 88.7 0.21 4.5E-06 54.3 1.5 36 290-328 491-526 (543)
94 KOG0826 Predicted E3 ubiquitin 88.5 0.32 6.9E-06 49.3 2.6 29 292-320 315-344 (357)
95 KOG0309 Conserved WD40 repeat- 88.1 0.25 5.5E-06 54.8 1.7 25 292-316 1045-1069(1081)
96 KOG2034 Vacuolar sorting prote 87.3 0.27 5.9E-06 55.4 1.4 19 290-308 832-850 (911)
97 KOG1100 Predicted E3 ubiquitin 84.0 0.48 1E-05 45.4 1.2 29 290-322 171-200 (207)
98 KOG3002 Zn finger protein [Gen 83.3 0.7 1.5E-05 46.7 2.1 30 290-322 62-91 (299)
99 PF08746 zf-RING-like: RING-li 83.1 0.59 1.3E-05 33.6 1.1 23 295-317 19-43 (43)
100 PF14446 Prok-RING_1: Prokaryo 81.4 1.5 3.2E-05 33.3 2.7 38 233-316 6-44 (54)
101 KOG1609 Protein involved in mR 79.8 0.96 2.1E-05 44.8 1.6 33 291-323 96-135 (323)
102 KOG0298 DEAD box-containing he 78.9 0.56 1.2E-05 54.9 -0.4 28 293-320 1170-1197(1394)
103 KOG3161 Predicted E3 ubiquitin 78.3 0.67 1.5E-05 50.7 -0.0 27 290-319 28-54 (861)
104 COG5183 SSM4 Protein involved 76.7 1.6 3.4E-05 49.2 2.2 24 298-321 40-65 (1175)
105 KOG1812 Predicted E3 ubiquitin 76.7 1.3 2.8E-05 46.3 1.5 20 292-311 165-184 (384)
106 KOG1829 Uncharacterized conser 76.7 0.82 1.8E-05 50.0 0.1 25 290-317 532-556 (580)
107 KOG4367 Predicted Zn-finger pr 76.4 5.6 0.00012 42.0 6.0 16 290-305 17-32 (699)
108 KOG3800 Predicted E3 ubiquitin 75.9 2.1 4.5E-05 42.9 2.6 32 290-321 18-50 (300)
109 KOG3899 Uncharacterized conser 71.8 2 4.3E-05 43.2 1.3 27 295-321 325-364 (381)
110 KOG3053 Uncharacterized conser 71.3 1.7 3.7E-05 42.9 0.8 25 297-321 49-81 (293)
111 PF13901 DUF4206: Domain of un 70.9 2.6 5.7E-05 40.1 1.9 24 290-318 172-196 (202)
112 KOG0269 WD40 repeat-containing 70.0 3.5 7.5E-05 46.2 2.9 22 295-316 799-820 (839)
113 KOG2066 Vacuolar assembly/sort 69.1 2 4.4E-05 48.2 0.9 28 290-318 804-831 (846)
114 PF02891 zf-MIZ: MIZ/SP-RING z 68.7 1.4 3.1E-05 32.6 -0.3 30 290-320 16-50 (50)
115 PF03854 zf-P11: P-11 zinc fin 68.4 2.2 4.8E-05 31.6 0.7 32 293-324 16-48 (50)
116 COG5109 Uncharacterized conser 64.6 4.6 0.0001 41.0 2.3 29 290-318 352-383 (396)
117 KOG4362 Transcriptional regula 64.1 2 4.3E-05 47.8 -0.4 34 290-323 34-70 (684)
118 PF05297 Herpes_LMP1: Herpesvi 64.0 2.3 4.9E-05 42.7 0.0 8 314-321 234-241 (381)
119 PF04216 FdhE: Protein involve 59.2 4.7 0.0001 40.2 1.3 25 296-320 196-220 (290)
120 PF10571 UPF0547: Uncharacteri 55.5 5.2 0.00011 25.8 0.6 11 290-300 14-25 (26)
121 KOG0825 PHD Zn-finger protein 55.5 6.6 0.00014 44.3 1.7 28 295-322 121-154 (1134)
122 PF03839 Sec62: Translocation 54.3 13 0.00028 36.2 3.3 27 87-113 153-182 (224)
123 PF12273 RCR: Chitin synthesis 53.4 7.6 0.00016 34.1 1.5 7 124-130 2-8 (130)
124 COG5220 TFB3 Cdk activating ki 52.4 10 0.00022 37.3 2.3 29 290-318 28-60 (314)
125 smart00132 LIM Zinc-binding do 50.0 13 0.00028 24.5 1.9 19 295-321 19-37 (39)
126 KOG2068 MOT2 transcription fac 49.8 18 0.00038 37.1 3.6 30 293-322 269-298 (327)
127 PF04710 Pellino: Pellino; In 49.1 5.7 0.00012 41.6 0.0 28 290-320 304-337 (416)
128 KOG2927 Membrane component of 48.3 21 0.00046 36.9 3.9 27 87-113 232-261 (372)
129 KOG3005 GIY-YIG type nuclease 46.4 8.6 0.00019 38.3 0.8 27 295-321 207-242 (276)
130 KOG1815 Predicted E3 ubiquitin 46.1 10 0.00022 40.2 1.4 35 290-324 84-128 (444)
131 KOG4718 Non-SMC (structural ma 43.4 10 0.00023 36.5 0.8 28 291-318 196-223 (235)
132 PF05568 ASFV_J13L: African sw 42.9 45 0.00097 30.5 4.7 46 114-159 15-62 (189)
133 PF05297 Herpes_LMP1: Herpesvi 42.0 8.5 0.00018 38.8 0.0 8 29-36 71-78 (381)
134 PF00628 PHD: PHD-finger; Int 42.0 4.2 9.2E-05 29.4 -1.6 26 294-319 19-50 (51)
135 PF10624 TraS: Plasmid conjuga 41.8 63 0.0014 29.1 5.4 43 49-103 5-47 (164)
136 KOG3842 Adaptor protein Pellin 41.8 22 0.00048 36.3 2.8 31 290-320 317-350 (429)
137 PRK03564 formate dehydrogenase 40.7 22 0.00047 36.3 2.6 21 299-319 214-234 (309)
138 PF05605 zf-Di19: Drought indu 40.0 6 0.00013 29.4 -1.1 13 232-244 2-14 (54)
139 KOG2071 mRNA cleavage and poly 39.2 16 0.00034 40.2 1.4 13 232-244 513-525 (579)
140 PF05290 Baculo_IE-1: Baculovi 37.4 36 0.00078 30.6 3.2 29 295-323 102-133 (140)
141 PF13717 zinc_ribbon_4: zinc-r 36.4 15 0.00033 25.2 0.6 14 234-247 4-17 (36)
142 TIGR00869 sec62 protein transl 35.4 45 0.00097 32.7 3.8 19 88-106 162-180 (232)
143 PF00412 LIM: LIM domain; Int 33.0 32 0.00069 25.1 1.9 24 294-325 17-40 (58)
144 KOG0824 Predicted E3 ubiquitin 32.4 47 0.001 33.7 3.5 29 295-323 124-152 (324)
145 PF09726 Macoilin: Transmembra 32.3 24 0.00053 39.8 1.6 40 90-135 88-133 (697)
146 TIGR01562 FdhE formate dehydro 32.1 23 0.0005 36.0 1.3 21 299-319 212-232 (305)
147 KOG3113 Uncharacterized conser 31.9 43 0.00092 33.3 3.0 32 290-323 128-159 (293)
148 KOG1812 Predicted E3 ubiquitin 31.8 26 0.00057 36.7 1.7 30 288-317 322-351 (384)
149 cd00350 rubredoxin_like Rubred 31.1 24 0.00053 23.6 0.9 20 294-319 6-25 (33)
150 PLN02189 cellulose synthase 30.9 39 0.00084 39.7 2.9 28 295-322 59-87 (1040)
151 PF15048 OSTbeta: Organic solu 30.4 49 0.0011 29.3 2.9 24 108-136 24-47 (125)
152 PF15128 T_cell_tran_alt: T-ce 30.4 44 0.00096 27.7 2.4 43 54-107 9-51 (92)
153 PF12273 RCR: Chitin synthesis 29.6 52 0.0011 28.8 3.0 8 130-137 3-10 (130)
154 KOG3039 Uncharacterized conser 29.4 29 0.00062 34.4 1.4 20 290-309 56-75 (303)
155 PF09723 Zn-ribbon_8: Zinc rib 29.0 14 0.0003 26.3 -0.7 29 290-319 6-34 (42)
156 PLN02195 cellulose synthase A 27.4 66 0.0014 37.6 4.0 29 294-322 30-59 (977)
157 smart00249 PHD PHD zinc finger 27.0 31 0.00068 23.4 0.9 13 294-306 19-31 (47)
158 PF06844 DUF1244: Protein of u 26.6 34 0.00074 27.1 1.1 12 299-310 12-23 (68)
159 PF13719 zinc_ribbon_5: zinc-r 26.5 27 0.00059 24.1 0.5 14 234-247 4-17 (37)
160 PF15091 DUF4554: Domain of un 26.2 21 0.00046 37.2 -0.1 15 25-39 156-170 (458)
161 PLN02436 cellulose synthase A 26.1 52 0.0011 38.8 2.9 28 295-322 61-89 (1094)
162 PLN02638 cellulose synthase A 26.0 54 0.0012 38.7 3.0 28 295-322 42-70 (1079)
163 KOG3842 Adaptor protein Pellin 23.5 76 0.0017 32.6 3.2 32 292-323 375-415 (429)
164 PF02318 FYVE_2: FYVE-type zin 23.5 57 0.0012 28.2 2.1 29 290-319 72-102 (118)
165 PF11755 DUF3311: Protein of u 23.1 55 0.0012 25.6 1.7 13 93-105 3-15 (66)
166 PF06906 DUF1272: Protein of u 22.7 1.4E+02 0.003 23.0 3.7 27 295-323 25-53 (57)
167 KOG2113 Predicted RNA binding 22.7 60 0.0013 33.3 2.3 30 290-321 356-386 (394)
168 PF13994 PgaD: PgaD-like prote 22.5 1.1E+02 0.0025 27.1 3.8 20 90-109 27-48 (138)
169 TIGR01478 STEVOR variant surfa 22.1 72 0.0016 32.2 2.7 31 125-155 258-288 (295)
170 PF01363 FYVE: FYVE zinc finge 21.8 42 0.00092 25.7 0.8 14 295-308 31-44 (69)
171 PTZ00370 STEVOR; Provisional 21.6 77 0.0017 32.0 2.8 32 125-156 254-285 (296)
172 KOG2927 Membrane component of 21.3 1.2E+02 0.0025 31.7 4.0 25 87-111 198-222 (372)
173 PRK11088 rrmA 23S rRNA methylt 20.2 60 0.0013 31.7 1.7 13 233-245 3-15 (272)
No 1
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.9e-32 Score=259.19 Aligned_cols=212 Identities=23% Similarity=0.381 Sum_probs=184.2
Q ss_pred HHHHHHHHHH--Hhhhccccccccccc----cceeeehhhHHHHHHHHHHHHhhhcccCCCCchhhhhhccccchhHHHH
Q 014400 15 FLSMLATSVI--IVAINWKRYHLCTYP----LHIWIVVDYTTVFVFRLLMFVDNGLASGMGLDLGWQQRYARFCGRVVVL 88 (425)
Q Consensus 15 ~~~~~~~~~~--~~~~~w~~~~~c~~~----~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~v~ 88 (425)
.+++++|+|| |++++||++|..+|. |+||.++.|+++.+. |.||...|+++
T Consensus 56 m~I~~i~lvIaQi~lv~WKkrh~RSy~~~tll~m~~iPlyf~~~~~-----------------------w~rfl~~WlmF 112 (328)
T KOG1734|consen 56 MAIFSIYLVIAQIFLVVWKKRHKRSYDVCTLLIMLFIPLYFFLYMQ-----------------------WYRFLFCWLMF 112 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhhhhhHH-----------------------HHHHHHHHHHH
Confidence 4677788888 999999999999999 599999999999988 88998889998
Q ss_pred HHHHhhhhhhhhheeeeEEEEEeeccccCCCCCC----chhhhHHHHHHHHHH---HHHHHHhhhhhhhcchhhhhhhhc
Q 014400 89 SILSLLLYPFLWAWTIIGTLWFTSARDCLPEEGQ----KWGFLIWLLFSYCGL---LCIACMSMGKWLTRRQAHSIRAQQ 161 (425)
Q Consensus 89 ~~~~l~l~pf~~~w~i~g~v~~~~~~~~l~~~~~----~~~~li~~v~~~~~l---l~i~~i~~~~~~~~r~~~~~r~~~ 161 (425)
+. ++..+++.++|+++.+++| |||++++++.+..++ |+++...++..+.........++-
T Consensus 113 ~~-------------~tafi~~ka~rkp~~g~tpRlVYkwFl~lyklSy~~g~vGyl~im~~~~g~n~~F~~~~~~~md~ 179 (328)
T KOG1734|consen 113 CG-------------FTAFITLKALRKPISGDTPRLVYKWFLFLYKLSYLLGVVGYLAIMFAQFGLNFTFFYLKTTYMDF 179 (328)
T ss_pred HH-------------HHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeEEeecchhHhhh
Confidence 87 6777888999999999999 799999997766654 677777787888888888899999
Q ss_pred CCccccccceecceecchhhhhhhhhhhhccCcCccccCCCCcccHHHHHHHHHHHHhCCccccccCCCCCCcCcccccc
Q 014400 162 GIPVSEYGVLLDMIRVPEWAFEAAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEE 241 (425)
Q Consensus 162 ~i~~~~~g~~~~~~~~p~~~~~~~~~~~r~~~~d~~a~~~~~~l~~~~rea~~~~i~~Lp~~~~~~~~~~~~~CaICle~ 241 (425)
||.+.+||+|++++ |+|.+++++|.+|...|+|.. +.+|+..+++ +.|+||.+.
T Consensus 180 gi~~lfyglYyGvl----------gRdfa~icsd~mAs~iGfYs~-----------~glPtkhl~d-----~vCaVCg~~ 233 (328)
T KOG1734|consen 180 GISFLFYGLYYGVL----------GRDFAEICSDYMASTIGFYSP-----------SGLPTKHLSD-----SVCAVCGQQ 233 (328)
T ss_pred hHHHHHHHHHHHhh----------hhHHHHHHHHHHHHHhcccCC-----------CCCCCCCCCc-----chhHhhcch
Confidence 99999999999888 999999999999999999997 8899988776 899999999
Q ss_pred cccCccccccccccCCCCCCCCchhhHHHHHhhhhhcccchhhhhccceEEeccccccchhhHHHH--HhcCCCCccccc
Q 014400 242 FHVGNEWQADVKFYPYGFTSHKPLCKLVHALMFLKEHMSTSLFLEVLQVRGLPCAHNFHIECIDEW--LRLNVKCPRCRC 319 (425)
Q Consensus 242 ~~~~~~~~~~~~~~p~~~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~LpC~HiFH~~CL~~W--L~~~~tCP~CR~ 319 (425)
+.+..+ ++.--|+..+|.|+|+||+.||+.| +.++++||.|++
T Consensus 234 ~~~s~~-----------------------------------eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKe 278 (328)
T KOG1734|consen 234 IDVSVD-----------------------------------EEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKE 278 (328)
T ss_pred heeecc-----------------------------------hhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHH
Confidence 987543 1222356889999999999999999 566889999999
Q ss_pred ccCC
Q 014400 320 SVFP 323 (425)
Q Consensus 320 ~V~~ 323 (425)
+|.-
T Consensus 279 kVdl 282 (328)
T KOG1734|consen 279 KVDL 282 (328)
T ss_pred HhhH
Confidence 9954
No 2
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=3.4e-17 Score=162.95 Aligned_cols=83 Identities=31% Similarity=0.636 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhCCccccccCCCCCCcCcccccc-cccCccccccccccCCCCCCCCchhhHHHHHhhhhhcccchhhhh
Q 014400 208 AQREAVEALIQELPKFRLKAVPTDCSECPICLEE-FHVGNEWQADVKFYPYGFTSHKPLCKLVHALMFLKEHMSTSLFLE 286 (425)
Q Consensus 208 ~~rea~~~~i~~Lp~~~~~~~~~~~~~CaICle~-~~~~~~~~~~~~~~p~~~~s~~~~~r~~~~~~~~~~~~~~~~~~~ 286 (425)
.-+.+-+++.+-+|+...+.+..++..|+||||+ |+.+.+ +.. ...
T Consensus 263 ~~~r~~kdl~~~~~t~t~eql~n~D~~C~ICmde~~h~~~~----------------~~~-----------------~~~ 309 (491)
T COG5243 263 RFRRATKDLNAMYPTATEEQLTNSDRTCTICMDEMFHPDHE----------------PLP-----------------RGL 309 (491)
T ss_pred HHHHHhhHHHhhcchhhhhhhcCCCCeEEEecccccCCCCc----------------cCc-----------------ccc
Confidence 3456677888889999999998888999999999 555432 111 122
Q ss_pred ccceEEeccccccchhhHHHHHhcCCCCcccccccCC
Q 014400 287 VLQVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 323 (425)
Q Consensus 287 ~~~~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V~~ 323 (425)
..++|+|||||+||.+||+.|++++++||+||.+|.-
T Consensus 310 ~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~if 346 (491)
T COG5243 310 DMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIF 346 (491)
T ss_pred cCCcccccccceeeHHHHHHHHHhccCCCcccCcccc
Confidence 3348999999999999999999999999999999643
No 3
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=5.8e-16 Score=155.59 Aligned_cols=76 Identities=32% Similarity=0.776 Sum_probs=63.3
Q ss_pred HHHHHHHhCCccccccCCCCC--CcCcccccccccCccccccccccCCCCCCCCchhhHHHHHhhhhhcccchhhhhccc
Q 014400 212 AVEALIQELPKFRLKAVPTDC--SECPICLEEFHVGNEWQADVKFYPYGFTSHKPLCKLVHALMFLKEHMSTSLFLEVLQ 289 (425)
Q Consensus 212 a~~~~i~~Lp~~~~~~~~~~~--~~CaICle~~~~~~~~~~~~~~~p~~~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 289 (425)
..+.+++++|...+++..+++ ..|+||+|+|++++.
T Consensus 207 ~~k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~Gdk------------------------------------------ 244 (348)
T KOG4628|consen 207 LIKRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDK------------------------------------------ 244 (348)
T ss_pred hHHHHHhhCCcEEeccccccCCCceEEEeecccccCCe------------------------------------------
Confidence 345667888988887765432 379999999999988
Q ss_pred eEEeccccccchhhHHHHHhcCC-CCcccccccCCCCchhh
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNV-KCPRCRCSVFPNLDLSA 329 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~-tCP~CR~~V~~~~~~~~ 329 (425)
++.|||+|.||..||+.||..+. .||+||+++.+..+.+.
T Consensus 245 lRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~~~~ 285 (348)
T KOG4628|consen 245 LRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSGSEP 285 (348)
T ss_pred eeEecCCCchhhccchhhHhhcCccCCCCCCcCCCCCCCCC
Confidence 99999999999999999999875 59999999988766553
No 4
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=2.7e-14 Score=146.56 Aligned_cols=180 Identities=17% Similarity=0.293 Sum_probs=113.8
Q ss_pred hHHHHHHHH-HHHHhhhcccCCCCchhh-hhhccccchhHHHHHHHHhhhhhhhhheeeeEEEEEeeccccCCCCCCchh
Q 014400 48 YTTVFVFRL-LMFVDNGLASGMGLDLGW-QQRYARFCGRVVVLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEEGQKWG 125 (425)
Q Consensus 48 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~r~~~~~~v~~~~~l~l~pf~~~w~i~g~v~~~~~~~~l~~~~~~~~ 125 (425)
|..+++|.. .-||-|..++ +-. --|.+.-|-. ++|..++|+++-+|+.+...|+..... +-....
T Consensus 453 f~~iLif~~~SfWIPQIv~N-----vvrg~SR~Pl~w~y--IlG~Tv~Rl~~plyVF~~s~n~~r~~p------~~~f~v 519 (636)
T KOG0828|consen 453 FIPILIFMYYSFWIPQIVAN-----VVRGDSRKPLHWYY--ILGMTVTRLAIPLYVFGCSENFMRVEP------KYFFAV 519 (636)
T ss_pred HHHHHHHHHHhhhHHHHHHH-----HhcCCCCCCcchhh--hhhHhHHhhhcceEEEecchhhhccCC------chhhHH
Confidence 445666766 5577776665 110 1234433333 566667999999998888888776655 333444
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhcchhhhhhhhcCCccccccceecceecchhhhhhhhhhhhccCcCccccCCCCcc
Q 014400 126 FLIWLLFSYCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEWAFEAAGQEMRGIGQDTAAYHPGLYL 205 (425)
Q Consensus 126 ~li~~v~~~~~ll~i~~i~~~~~~~~r~~~~~r~~~~i~~~~~g~~~~~~~~p~~~~~~~~~~~r~~~~d~~a~~~~~~l 205 (425)
++..|+..++++|.++..++.|||.+|+- + | +.+.++.+. .+|
T Consensus 520 ~L~lwmlFQv~vLl~Qd~lGsR~FlPkk~--------l--------------p----e~YsY~r~l-~~d---------- 562 (636)
T KOG0828|consen 520 GLVLWMLFQVLVLLVQDYLGSRCFLPKKF--------L--------------P----EKYSYHRRL-QQD---------- 562 (636)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccchhh--------C--------------c----ccccccccc-ccc----------
Confidence 55555677888999999999999999840 1 1 111222221 111
Q ss_pred cHHHHHHHHHHHHhCCccccccCCCCCCcCcccccccccCccccccccccCCCCCCCCchhhHHHHHhhhhhcccchhhh
Q 014400 206 TAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEWQADVKFYPYGFTSHKPLCKLVHALMFLKEHMSTSLFL 285 (425)
Q Consensus 206 ~~~~rea~~~~i~~Lp~~~~~~~~~~~~~CaICle~~~~~~~~~~~~~~~p~~~~s~~~~~r~~~~~~~~~~~~~~~~~~ 285 (425)
..+..-.+..+|+|||.+++.-.+. ..+......
T Consensus 563 ------------------h~~~~~~~t~dC~ICMt~I~l~~~~----------------------------s~~~~~~~~ 596 (636)
T KOG0828|consen 563 ------------------HLEAFVRRTNDCVICMTPIDLRSTG----------------------------SDCMVASMM 596 (636)
T ss_pred ------------------cccchhhccccceEeccccceeecc----------------------------Ccchhhhhh
Confidence 1111112336799999998753220 001111222
Q ss_pred hccceEEeccccccchhhHHHHHh-cCCCCcccccccCC
Q 014400 286 EVLQVRGLPCAHNFHIECIDEWLR-LNVKCPRCRCSVFP 323 (425)
Q Consensus 286 ~~~~~~~LpC~HiFH~~CL~~WL~-~~~tCP~CR~~V~~ 323 (425)
-+.+++..||.|+||..||..||. .+..||+||+.+++
T Consensus 597 ~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 597 VRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 234589999999999999999999 57799999999876
No 5
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.50 E-value=6.5e-15 Score=106.03 Aligned_cols=29 Identities=59% Similarity=1.283 Sum_probs=27.2
Q ss_pred eEEeccccccchhhHHHHHhcCCCCcccc
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCR 318 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR 318 (425)
+..++|||+||.+||.+|++.+.+||+||
T Consensus 16 ~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 16 VVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp EEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred EEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 88999999999999999999999999998
No 6
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.29 E-value=1.8e-12 Score=103.57 Aligned_cols=29 Identities=48% Similarity=1.167 Sum_probs=26.3
Q ss_pred eEEeccccccchhhHHHHHhcCCCCcccc
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCR 318 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR 318 (425)
+...+|||.||..||.+||+.+.+||+||
T Consensus 45 i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 45 IVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred eEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 66778999999999999999999999998
No 7
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=3.1e-12 Score=125.14 Aligned_cols=35 Identities=49% Similarity=1.197 Sum_probs=32.5
Q ss_pred eEEeccccccchhhHHHHHh-cCCCCcccccccCCC
Q 014400 290 VRGLPCAHNFHIECIDEWLR-LNVKCPRCRCSVFPN 324 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~-~~~tCP~CR~~V~~~ 324 (425)
++.|||.|.||..|++.|+. -+..||+||..++|.
T Consensus 339 ~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPPp 374 (374)
T COG5540 339 LRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPPP 374 (374)
T ss_pred EEEeccCceechhHHHHHHhhhcccCCccCCCCCCC
Confidence 99999999999999999998 578999999999873
No 8
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.16 E-value=1.8e-11 Score=118.27 Aligned_cols=73 Identities=26% Similarity=0.512 Sum_probs=51.8
Q ss_pred HHHHHHhCCccccccC----CCCCCcCcccccccccCccccccccccCCCCCCCCchhhHHHHHhhhhhcccchhhhhcc
Q 014400 213 VEALIQELPKFRLKAV----PTDCSECPICLEEFHVGNEWQADVKFYPYGFTSHKPLCKLVHALMFLKEHMSTSLFLEVL 288 (425)
Q Consensus 213 ~~~~i~~Lp~~~~~~~----~~~~~~CaICle~~~~~~~~~~~~~~~p~~~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~ 288 (425)
.+.+++.+|....+-. ..++.+|+||+|++...+.. .+.
T Consensus 151 ~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~-------------------------------------~~~ 193 (238)
T PHA02929 151 YKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIK-------------------------------------NMY 193 (238)
T ss_pred hHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccc-------------------------------------ccc
Confidence 5667788888754321 12346899999998653210 000
Q ss_pred ceEEeccccccchhhHHHHHhcCCCCcccccccC
Q 014400 289 QVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 322 (425)
Q Consensus 289 ~~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V~ 322 (425)
-...++|+|.||..||.+|++.+.+||+||..+.
T Consensus 194 ~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 194 FGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred ceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 0344579999999999999999999999998774
No 9
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.5e-10 Score=124.43 Aligned_cols=68 Identities=35% Similarity=0.823 Sum_probs=51.3
Q ss_pred HHHhCCcccccc--CCCCCCcCcccccccccCccccccccccCCCCCCCCchhhHHHHHhhhhhcccchhhhhccceEEe
Q 014400 216 LIQELPKFRLKA--VPTDCSECPICLEEFHVGNEWQADVKFYPYGFTSHKPLCKLVHALMFLKEHMSTSLFLEVLQVRGL 293 (425)
Q Consensus 216 ~i~~Lp~~~~~~--~~~~~~~CaICle~~~~~~~~~~~~~~~p~~~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~L 293 (425)
....++..+.++ ....+..|+||+|++..+.. ..+++|
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~C~IC~e~l~~~~~----------------------------------------~~~~rL 312 (543)
T KOG0802|consen 273 LQTGLPGATLEERGLALSDELCIICLEELHSGHN----------------------------------------ITPKRL 312 (543)
T ss_pred ccccccccChHHhhhhhcCCeeeeechhhccccc----------------------------------------ccccee
Confidence 334455554444 33345689999999987532 117899
Q ss_pred ccccccchhhHHHHHhcCCCCcccccccCC
Q 014400 294 PCAHNFHIECIDEWLRLNVKCPRCRCSVFP 323 (425)
Q Consensus 294 pC~HiFH~~CL~~WL~~~~tCP~CR~~V~~ 323 (425)
||+|+||.+||++|+++.++||.||..+..
T Consensus 313 ~C~Hifh~~CL~~W~er~qtCP~CR~~~~~ 342 (543)
T KOG0802|consen 313 PCGHIFHDSCLRSWFERQQTCPTCRTVLYD 342 (543)
T ss_pred ecccchHHHHHHHHHHHhCcCCcchhhhhc
Confidence 999999999999999999999999995543
No 10
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1.9e-10 Score=112.38 Aligned_cols=36 Identities=36% Similarity=0.788 Sum_probs=32.9
Q ss_pred eEEeccccccchhhHHHHHhcCCCCcccccccCCCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNL 325 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V~~~~ 325 (425)
+..+||||+||-+||.+|...+..||+||+++.|..
T Consensus 252 pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 252 PSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCcCcCcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence 556899999999999999999999999999998754
No 11
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.94 E-value=1.1e-09 Score=102.39 Aligned_cols=36 Identities=31% Similarity=0.608 Sum_probs=29.8
Q ss_pred eEEeccccccchhhHHHHHhc----------------CCCCcccccccCCCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRL----------------NVKCPRCRCSVFPNL 325 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~----------------~~tCP~CR~~V~~~~ 325 (425)
+..++|||.||..||..|+.. ..+||+||..+....
T Consensus 31 PVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~ 82 (193)
T PLN03208 31 PVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEAT 82 (193)
T ss_pred cEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhc
Confidence 667899999999999999852 348999999996543
No 12
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.89 E-value=1.1e-09 Score=81.02 Aligned_cols=33 Identities=42% Similarity=0.810 Sum_probs=30.2
Q ss_pred eEEeccccc-cchhhHHHHHhcCCCCcccccccC
Q 014400 290 VRGLPCAHN-FHIECIDEWLRLNVKCPRCRCSVF 322 (425)
Q Consensus 290 ~~~LpC~Hi-FH~~CL~~WL~~~~tCP~CR~~V~ 322 (425)
+..+||||. |+..|+..|++.+.+||+||+++.
T Consensus 15 ~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 15 VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 788999999 999999999999999999999874
No 13
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.88 E-value=1.2e-09 Score=76.62 Aligned_cols=32 Identities=47% Similarity=1.071 Sum_probs=27.5
Q ss_pred eEEeccccccchhhHHHHHhc-CCCCccccccc
Q 014400 290 VRGLPCAHNFHIECIDEWLRL-NVKCPRCRCSV 321 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~-~~tCP~CR~~V 321 (425)
...++|||.||..|+++|++. +..||.||..+
T Consensus 13 ~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 13 VVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred eEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 455569999999999999998 77899999764
No 14
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.78 E-value=3.5e-09 Score=74.29 Aligned_cols=28 Identities=50% Similarity=1.071 Sum_probs=25.4
Q ss_pred eEEeccccccchhhHHHHHhcCCCCccc
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRC 317 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~C 317 (425)
+..++|||.|+.+||..|++.+.+||+|
T Consensus 12 ~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 12 VVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp EEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 5789999999999999999999999998
No 15
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.2e-08 Score=97.18 Aligned_cols=39 Identities=26% Similarity=0.598 Sum_probs=32.0
Q ss_pred eEEeccccccchhhHHHHHhc---CCCCcccccccCCCCchh
Q 014400 290 VRGLPCAHNFHIECIDEWLRL---NVKCPRCRCSVFPNLDLS 328 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~---~~tCP~CR~~V~~~~~~~ 328 (425)
++...|||.||-.||-+||.. ++.||+||..|..+.-.+
T Consensus 60 PVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvP 101 (230)
T KOG0823|consen 60 PVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVP 101 (230)
T ss_pred CEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEe
Confidence 667779999999999999987 347899999997654443
No 16
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.71 E-value=8.5e-09 Score=84.39 Aligned_cols=32 Identities=41% Similarity=0.900 Sum_probs=27.0
Q ss_pred eEEeccccccchhhHHHHHhc---CCCCccccccc
Q 014400 290 VRGLPCAHNFHIECIDEWLRL---NVKCPRCRCSV 321 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~---~~tCP~CR~~V 321 (425)
+..-.|+|.||.+||.+|++. +.+||+||+..
T Consensus 47 lv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w 81 (85)
T PF12861_consen 47 LVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPW 81 (85)
T ss_pred eeeccCccHHHHHHHHHHHccccCCCCCCCcCCee
Confidence 444459999999999999986 56999999865
No 17
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.66 E-value=1.6e-08 Score=68.50 Aligned_cols=28 Identities=46% Similarity=1.062 Sum_probs=25.5
Q ss_pred eEEeccccccchhhHHHHHh-cCCCCccc
Q 014400 290 VRGLPCAHNFHIECIDEWLR-LNVKCPRC 317 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~-~~~tCP~C 317 (425)
+..++|||.||..|++.|++ .+.+||.|
T Consensus 11 ~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 11 PVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred cEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 77899999999999999998 56789988
No 18
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.66 E-value=1.7e-08 Score=77.20 Aligned_cols=33 Identities=18% Similarity=0.283 Sum_probs=30.2
Q ss_pred eEEeccccccchhhHHHHHhcCCCCcccccccC
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 322 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V~ 322 (425)
++.++|||+|+..||.+|++.+.+||.|++.+.
T Consensus 14 Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 14 PVILPSGQTYERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred CEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence 667899999999999999999999999998773
No 19
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.6e-08 Score=92.89 Aligned_cols=34 Identities=32% Similarity=0.673 Sum_probs=29.8
Q ss_pred eEEeccccccchhhHHHHHhcCCCCcccccccCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 323 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V~~ 323 (425)
+.-..|||+||..||+.-++....||+||++|-.
T Consensus 146 ~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~ 179 (187)
T KOG0320|consen 146 PVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITH 179 (187)
T ss_pred ccccccchhHHHHHHHHHHHhCCCCCCcccccch
Confidence 3446799999999999999999999999997743
No 20
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.63 E-value=1.7e-08 Score=72.33 Aligned_cols=28 Identities=32% Similarity=0.914 Sum_probs=22.0
Q ss_pred eEEeccccccchhhHHHHHhcC----CCCccc
Q 014400 290 VRGLPCAHNFHIECIDEWLRLN----VKCPRC 317 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~----~tCP~C 317 (425)
++.|+|||.|+..||..|.+.. ..||.|
T Consensus 11 Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 11 PVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp EEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred ccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8889999999999999998874 369988
No 21
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.58 E-value=2.9e-08 Score=69.97 Aligned_cols=28 Identities=50% Similarity=1.170 Sum_probs=24.7
Q ss_pred eEEeccccccchhhHHHHHh--cCCCCccc
Q 014400 290 VRGLPCAHNFHIECIDEWLR--LNVKCPRC 317 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~--~~~tCP~C 317 (425)
...++|||.|+..||++|++ ....||+|
T Consensus 12 ~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 12 VILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp EEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 34789999999999999999 46689998
No 22
>PHA02926 zinc finger-like protein; Provisional
Probab=98.54 E-value=3.6e-08 Score=93.61 Aligned_cols=33 Identities=36% Similarity=0.692 Sum_probs=26.4
Q ss_pred eEEeccccccchhhHHHHHhcC------CCCcccccccC
Q 014400 290 VRGLPCAHNFHIECIDEWLRLN------VKCPRCRCSVF 322 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~------~tCP~CR~~V~ 322 (425)
....+|+|.||..||+.|.+.+ .+||+||....
T Consensus 192 GIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 192 GLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred cccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 3444699999999999999753 36999998653
No 23
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.54 E-value=4.9e-08 Score=70.37 Aligned_cols=30 Identities=37% Similarity=0.719 Sum_probs=27.6
Q ss_pred eEEeccccccchhhHHHHHhcCCCCccccc
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRC 319 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~ 319 (425)
++.++|||+|+..|+.........||+||+
T Consensus 15 ~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 15 PRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred eEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 888999999999999999977889999984
No 24
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.53 E-value=4.6e-08 Score=78.58 Aligned_cols=28 Identities=39% Similarity=0.775 Sum_probs=26.3
Q ss_pred ccccccchhhHHHHHhcCCCCccccccc
Q 014400 294 PCAHNFHIECIDEWLRLNVKCPRCRCSV 321 (425)
Q Consensus 294 pC~HiFH~~CL~~WL~~~~tCP~CR~~V 321 (425)
-|+|.||.+||..||..+..||+||++-
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w 80 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKGVCPLDRQTW 80 (88)
T ss_pred ecchHHHHHHHHHHHhhCCCCCCCCcee
Confidence 3999999999999999999999999875
No 25
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=7.2e-08 Score=93.46 Aligned_cols=37 Identities=32% Similarity=0.843 Sum_probs=32.3
Q ss_pred eEEeccccccchhhHHH-HHhcCCC-CcccccccCCCCc
Q 014400 290 VRGLPCAHNFHIECIDE-WLRLNVK-CPRCRCSVFPNLD 326 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~-WL~~~~t-CP~CR~~V~~~~~ 326 (425)
+..+||||+|+..||-. |-+++.. ||+||.++.|+..
T Consensus 228 ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 228 PSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred cccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 66789999999999999 9877765 9999999988754
No 26
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.41 E-value=1.3e-07 Score=97.82 Aligned_cols=34 Identities=32% Similarity=0.553 Sum_probs=30.6
Q ss_pred eEEeccccccchhhHHHHHhcCCCCcccccccCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 323 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V~~ 323 (425)
++.++|||.||..||..|+..+..||+||..+..
T Consensus 39 PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 39 PVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccCCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 5568999999999999999998899999998754
No 27
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.4e-07 Score=79.31 Aligned_cols=34 Identities=29% Similarity=0.630 Sum_probs=28.5
Q ss_pred ccceEEec-cccccchhhHHHHHhcCCCCcccccc
Q 014400 287 VLQVRGLP-CAHNFHIECIDEWLRLNVKCPRCRCS 320 (425)
Q Consensus 287 ~~~~~~Lp-C~HiFH~~CL~~WL~~~~tCP~CR~~ 320 (425)
.+-++..- |+|.||..||..||+.++.||+|.++
T Consensus 72 ~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 72 EECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred CceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 33355554 99999999999999999999999765
No 28
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.18 E-value=9e-07 Score=63.82 Aligned_cols=26 Identities=35% Similarity=0.825 Sum_probs=18.9
Q ss_pred eEEeccccccchhhHHHHHhcC----CCCc
Q 014400 290 VRGLPCAHNFHIECIDEWLRLN----VKCP 315 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~----~tCP 315 (425)
++.|+|||+|+..||+.+++.+ .+||
T Consensus 14 P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 14 PMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 8899999999999999999854 2677
No 29
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=6.8e-07 Score=71.35 Aligned_cols=27 Identities=44% Similarity=1.079 Sum_probs=23.9
Q ss_pred cccccchhhHHHHHhc---CCCCccccccc
Q 014400 295 CAHNFHIECIDEWLRL---NVKCPRCRCSV 321 (425)
Q Consensus 295 C~HiFH~~CL~~WL~~---~~tCP~CR~~V 321 (425)
|.|.||..||.+|+.. +..||+||+.-
T Consensus 51 C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 51 CLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred HHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 9999999999999976 45899999864
No 30
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.15 E-value=1.2e-06 Score=69.87 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=28.8
Q ss_pred eEEeccccccchhhHHHHHhc-CCCCcccccccCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRL-NVKCPRCRCSVFP 323 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~-~~tCP~CR~~V~~ 323 (425)
++.+||||.|...||..|++. +.+||.|++.+..
T Consensus 17 PVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 17 PVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp EEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred ceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 888999999999999999999 8899999988765
No 31
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.06 E-value=2.7e-06 Score=62.99 Aligned_cols=29 Identities=28% Similarity=0.806 Sum_probs=24.5
Q ss_pred eEEeccc-----cccchhhHHHHHhcC--CCCcccc
Q 014400 290 VRGLPCA-----HNFHIECIDEWLRLN--VKCPRCR 318 (425)
Q Consensus 290 ~~~LpC~-----HiFH~~CL~~WL~~~--~tCP~CR 318 (425)
+...||. |.+|..||+.|+..+ .+||+|+
T Consensus 14 ~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 14 PLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred eeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 6678985 899999999999664 4899995
No 32
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=2e-06 Score=90.12 Aligned_cols=35 Identities=26% Similarity=0.579 Sum_probs=28.2
Q ss_pred eEEeccccccchhhHHHHHhcC-----CCCcccccccCCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRLN-----VKCPRCRCSVFPN 324 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~-----~tCP~CR~~V~~~ 324 (425)
+..+.|||+||..||-..+... ..||+||..|-++
T Consensus 199 p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~k 238 (513)
T KOG2164|consen 199 PVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLK 238 (513)
T ss_pred ccccccCceeeHHHHHHHHhhhcccCCccCCchhhhcccc
Confidence 4445699999999998887653 4899999988764
No 33
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.01 E-value=1.7e-06 Score=86.43 Aligned_cols=33 Identities=33% Similarity=0.744 Sum_probs=30.8
Q ss_pred eEEeccccccchhhHHHHHhcCCCCcccccccC
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 322 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V~ 322 (425)
++.+||+|.||.-||+..|..+..||.|+..+-
T Consensus 36 p~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~ 68 (442)
T KOG0287|consen 36 PMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVT 68 (442)
T ss_pred ceeccccchHHHHHHHHHhccCCCCCceecccc
Confidence 888999999999999999999999999997763
No 34
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.91 E-value=2.8e-06 Score=93.67 Aligned_cols=28 Identities=32% Similarity=1.029 Sum_probs=25.0
Q ss_pred cccccchhhHHHHHhc--CCCCcccccccC
Q 014400 295 CAHNFHIECIDEWLRL--NVKCPRCRCSVF 322 (425)
Q Consensus 295 C~HiFH~~CL~~WL~~--~~tCP~CR~~V~ 322 (425)
|+|.||..||-.|++. +.+||+||.++.
T Consensus 1494 CknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1494 CKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 9999999999999998 569999997653
No 35
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.88 E-value=8.3e-06 Score=81.64 Aligned_cols=31 Identities=29% Similarity=0.679 Sum_probs=25.3
Q ss_pred ccccccchhhHHHHH-hcCCCCcccccccCCC
Q 014400 294 PCAHNFHIECIDEWL-RLNVKCPRCRCSVFPN 324 (425)
Q Consensus 294 pC~HiFH~~CL~~WL-~~~~tCP~CR~~V~~~ 324 (425)
+|||.||.+||+..+ .....||.|+..+...
T Consensus 25 ~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 25 VCGHTLCESCVDLLFVRGSGSCPECDTPLRKN 56 (309)
T ss_pred CCCCcccHHHHHHHhcCCCCCCCCCCCccchh
Confidence 799999999999955 4456899999877543
No 36
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=5e-06 Score=79.17 Aligned_cols=30 Identities=37% Similarity=0.738 Sum_probs=26.6
Q ss_pred eEEeccccccchhhHHHHHhcCCCCccccc
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRC 319 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~ 319 (425)
++.+||||.|+..||..+......||.||.
T Consensus 26 p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 26 PVLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred CccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 567999999999999999886678999993
No 37
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.85 E-value=2.6e-06 Score=67.61 Aligned_cols=29 Identities=31% Similarity=0.973 Sum_probs=17.2
Q ss_pred ccccccchhhHHHHHhc----C-------CCCcccccccC
Q 014400 294 PCAHNFHIECIDEWLRL----N-------VKCPRCRCSVF 322 (425)
Q Consensus 294 pC~HiFH~~CL~~WL~~----~-------~tCP~CR~~V~ 322 (425)
.|++.||..||.+||+. + .+||.|+.++.
T Consensus 27 ~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 27 SCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp T----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred ccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 49999999999999874 1 15999998874
No 38
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.85 E-value=6.9e-06 Score=84.81 Aligned_cols=32 Identities=34% Similarity=0.978 Sum_probs=26.9
Q ss_pred eEEeccccccchhhHHHHHhcCCCCcccccccCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 323 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V~~ 323 (425)
+....|.|.||..|+..| ...+||+||....|
T Consensus 192 i~t~~c~Hsfh~~cl~~w--~~~scpvcR~~q~p 223 (493)
T KOG0804|consen 192 ILTILCNHSFHCSCLMKW--WDSSCPVCRYCQSP 223 (493)
T ss_pred eeeeecccccchHHHhhc--ccCcChhhhhhcCc
Confidence 566779999999999999 46789999976653
No 39
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.83 E-value=7.4e-06 Score=80.51 Aligned_cols=32 Identities=31% Similarity=0.570 Sum_probs=29.4
Q ss_pred eEEeccccccchhhHHHHHhcCCCCccccccc
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 321 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V 321 (425)
+..++|||.||..||+..|..+..||+||++-
T Consensus 38 p~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~ 69 (391)
T COG5432 38 PCETTCGHTFCSLCIRRHLGTQPFCPVCREDP 69 (391)
T ss_pred ceecccccchhHHHHHHHhcCCCCCccccccH
Confidence 67789999999999999999999999999753
No 40
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=1.6e-05 Score=80.79 Aligned_cols=29 Identities=34% Similarity=0.962 Sum_probs=24.8
Q ss_pred cccccchhhHHHHHhc---CCCCcccccccCC
Q 014400 295 CAHNFHIECIDEWLRL---NVKCPRCRCSVFP 323 (425)
Q Consensus 295 C~HiFH~~CL~~WL~~---~~tCP~CR~~V~~ 323 (425)
|||+||..||..|++. +.+||+||-++..
T Consensus 26 cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~ 57 (465)
T KOG0827|consen 26 CGHIFHTTCLTQWFEGDPSNRGCPICQIKLQE 57 (465)
T ss_pred hhhHHHHHHHHHHHccCCccCCCCceeecccc
Confidence 9999999999999987 3589999955543
No 41
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=3.1e-05 Score=78.33 Aligned_cols=39 Identities=26% Similarity=0.485 Sum_probs=33.0
Q ss_pred eEEeccccc-cchhhHHHHHhcCCCCcccccccCCCCchh
Q 014400 290 VRGLPCAHN-FHIECIDEWLRLNVKCPRCRCSVFPNLDLS 328 (425)
Q Consensus 290 ~~~LpC~Hi-FH~~CL~~WL~~~~tCP~CR~~V~~~~~~~ 328 (425)
...|||.|. .|..|-+.-.-.++.||+||+.+..-.+..
T Consensus 303 t~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~ 342 (349)
T KOG4265|consen 303 TVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIY 342 (349)
T ss_pred eEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheec
Confidence 888999995 999999988767889999999997655544
No 42
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=3.7e-05 Score=76.11 Aligned_cols=36 Identities=25% Similarity=0.505 Sum_probs=30.0
Q ss_pred eEEeccccccchhhHHHHHhc-CCCCcccccccCCCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRL-NVKCPRCRCSVFPNL 325 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~-~~tCP~CR~~V~~~~ 325 (425)
+..|+|+|.|+..||+.=... +.+|++||.++....
T Consensus 20 Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 20 PVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred CccccccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence 566999999999999987666 557999999987553
No 43
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.46 E-value=0.00028 Score=72.25 Aligned_cols=35 Identities=31% Similarity=0.832 Sum_probs=30.3
Q ss_pred eEEeccccccchhhHHHHHhc--CCCCcccccccCCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRL--NVKCPRCRCSVFPN 324 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~--~~tCP~CR~~V~~~ 324 (425)
++.=||||..|..||..|-.. .++||.||.++...
T Consensus 382 vkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 382 VKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred cccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 778899999999999999754 67999999988543
No 44
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=2.9e-05 Score=78.27 Aligned_cols=38 Identities=34% Similarity=0.670 Sum_probs=30.0
Q ss_pred eEEec-cccccchhhHHHHHhc-CCCCcccccccCCCCch
Q 014400 290 VRGLP-CAHNFHIECIDEWLRL-NVKCPRCRCSVFPNLDL 327 (425)
Q Consensus 290 ~~~Lp-C~HiFH~~CL~~WL~~-~~tCP~CR~~V~~~~~~ 327 (425)
.+..+ |.|.||..||..=|+. +++||.||+++..+..+
T Consensus 56 tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsL 95 (381)
T KOG0311|consen 56 TMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSL 95 (381)
T ss_pred hcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccC
Confidence 33344 9999999999888776 77999999988665444
No 45
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00011 Score=75.23 Aligned_cols=32 Identities=34% Similarity=0.943 Sum_probs=26.5
Q ss_pred eEEeccccccchhhHHHHHhc--CCCCccccccc
Q 014400 290 VRGLPCAHNFHIECIDEWLRL--NVKCPRCRCSV 321 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~--~~tCP~CR~~V 321 (425)
...|.|||.|...||+.||.+ ...||.|..+-
T Consensus 22 ~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 22 IVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred EeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence 667889999999999999964 34799998554
No 46
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.32 E-value=0.0001 Score=75.24 Aligned_cols=29 Identities=48% Similarity=1.186 Sum_probs=26.5
Q ss_pred eEEeccccccchhhHHHHHhcC--CCCcccc
Q 014400 290 VRGLPCAHNFHIECIDEWLRLN--VKCPRCR 318 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~--~tCP~CR 318 (425)
...|||.||||..|+.+.|+.+ .+||.||
T Consensus 382 LqALpCsHIfH~rCl~e~L~~n~~rsCP~Cr 412 (518)
T KOG1941|consen 382 LQALPCSHIFHLRCLQEILENNGTRSCPNCR 412 (518)
T ss_pred ccccchhHHHHHHHHHHHHHhCCCCCCccHH
Confidence 6789999999999999999875 4899999
No 47
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.15 E-value=8.5e-05 Score=81.10 Aligned_cols=35 Identities=31% Similarity=0.540 Sum_probs=29.9
Q ss_pred ccceEEeccccccchhhHHHHHhcCCCCccccccc
Q 014400 287 VLQVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 321 (425)
Q Consensus 287 ~~~~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V 321 (425)
++..-..+|+|.||.+||..|-+.-++||+||...
T Consensus 136 qL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF 170 (1134)
T KOG0825|consen 136 QLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEF 170 (1134)
T ss_pred HhhccccccccccHHHHhhhhhhhcccCchhhhhh
Confidence 33355667999999999999999999999999654
No 48
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.00021 Score=72.95 Aligned_cols=30 Identities=40% Similarity=1.021 Sum_probs=24.5
Q ss_pred Eec-cccccchhhHHHHH--hc-----CCCCccccccc
Q 014400 292 GLP-CAHNFHIECIDEWL--RL-----NVKCPRCRCSV 321 (425)
Q Consensus 292 ~Lp-C~HiFH~~CL~~WL--~~-----~~tCP~CR~~V 321 (425)
.|| |.|.|+..||+.|- +. ...||.||...
T Consensus 183 ilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 183 ILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred cCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 345 99999999999997 44 46899999654
No 49
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0002 Score=53.97 Aligned_cols=30 Identities=27% Similarity=0.511 Sum_probs=23.1
Q ss_pred eccccc-cchhhH-HHHHhcCCCCcccccccC
Q 014400 293 LPCAHN-FHIECI-DEWLRLNVKCPRCRCSVF 322 (425)
Q Consensus 293 LpC~Hi-FH~~CL-~~WL~~~~tCP~CR~~V~ 322 (425)
.-|||+ .+..|- +.|-..+..||+||.++.
T Consensus 23 YtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 23 YTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred HHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 459996 788885 555557999999998763
No 50
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.00077 Score=70.13 Aligned_cols=34 Identities=35% Similarity=0.804 Sum_probs=30.4
Q ss_pred eEEeccccccchhhHHHHHhcCCCCcccccccCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 323 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V~~ 323 (425)
+..+||||.|+..||..=+..+..||.||..+..
T Consensus 97 pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 97 PVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred CccccccccccHHHHHHHhccCCCCccccccccc
Confidence 6678999999999999988888899999988874
No 51
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=96.75 E-value=0.0004 Score=54.14 Aligned_cols=31 Identities=29% Similarity=0.659 Sum_probs=16.4
Q ss_pred eEEeccccccchhhHHHHHhcCCCCcccccccC
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 322 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V~ 322 (425)
+....|.|+|+..||..-+. ..||+|+.+.-
T Consensus 21 v~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw 51 (65)
T PF14835_consen 21 VCLGGCEHIFCSSCIRDCIG--SECPVCHTPAW 51 (65)
T ss_dssp B---SSS--B-TTTGGGGTT--TB-SSS--B-S
T ss_pred ceeccCccHHHHHHhHHhcC--CCCCCcCChHH
Confidence 44556999999999988554 45999987653
No 52
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=96.62 E-value=0.00081 Score=66.72 Aligned_cols=50 Identities=28% Similarity=0.652 Sum_probs=40.1
Q ss_pred CCcCcccccccccCccccccccccCCCCCCCCchhhHHHHHhhhhhcccchhhhhccceEEeccccccchhhHHHHHh--
Q 014400 232 CSECPICLEEFHVGNEWQADVKFYPYGFTSHKPLCKLVHALMFLKEHMSTSLFLEVLQVRGLPCAHNFHIECIDEWLR-- 309 (425)
Q Consensus 232 ~~~CaICle~~~~~~~~~~~~~~~p~~~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~LpC~HiFH~~CL~~WL~-- 309 (425)
..+|.|||-.|..++. ..+++|-|.||..|+-..|.
T Consensus 115 ~gqCvICLygfa~~~~------------------------------------------ft~T~C~Hy~H~~ClaRyl~~~ 152 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPA------------------------------------------FTVTACDHYMHFACLARYLTEC 152 (368)
T ss_pred CCceEEEEEeecCCCc------------------------------------------eeeehhHHHHHHHHHHHHHHHH
Confidence 3579999999988766 78899999999999987762
Q ss_pred ----------------c-----CCCCcccccccCC
Q 014400 310 ----------------L-----NVKCPRCRCSVFP 323 (425)
Q Consensus 310 ----------------~-----~~tCP~CR~~V~~ 323 (425)
. ...||+||+.+..
T Consensus 153 ~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 153 LTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 0 1259999988753
No 53
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.00059 Score=74.90 Aligned_cols=36 Identities=28% Similarity=0.548 Sum_probs=29.3
Q ss_pred eEEeccccccchhhHHHHHhc-CCCCcccccccCCCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRL-NVKCPRCRCSVFPNL 325 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~-~~tCP~CR~~V~~~~ 325 (425)
.....|+|+||..|+..-++. +..||.|.....+++
T Consensus 656 ~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD 692 (698)
T KOG0978|consen 656 AVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAND 692 (698)
T ss_pred HHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence 344559999999999999987 558999998876654
No 54
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.35 E-value=0.0019 Score=74.48 Aligned_cols=33 Identities=30% Similarity=0.761 Sum_probs=27.4
Q ss_pred eEEeccccccchhhHHHHHhcC----------CCCcccccccC
Q 014400 290 VRGLPCAHNFHIECIDEWLRLN----------VKCPRCRCSVF 322 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~----------~tCP~CR~~V~ 322 (425)
...|-|+|+||..|.+.-|+.+ -+||+|+.++.
T Consensus 3502 ~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3502 AIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred ceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 7789999999999998776653 27999998873
No 55
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.35 E-value=0.0015 Score=68.14 Aligned_cols=35 Identities=34% Similarity=0.663 Sum_probs=30.6
Q ss_pred eccccccchhhHHHHHhcCCCCcccccccCCCCch
Q 014400 293 LPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDL 327 (425)
Q Consensus 293 LpC~HiFH~~CL~~WL~~~~tCP~CR~~V~~~~~~ 327 (425)
..|||.|+..|+..|+..+..||.||..+......
T Consensus 38 ~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~ 72 (391)
T KOG0297|consen 38 TTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEEL 72 (391)
T ss_pred CCCCCcccccccchhhccCcCCcccccccchhhcc
Confidence 57999999999999999999999999887655444
No 56
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.34 E-value=0.0016 Score=49.74 Aligned_cols=27 Identities=30% Similarity=0.723 Sum_probs=19.0
Q ss_pred eEEeccccccchhhHHHHHhc--CCCCcc
Q 014400 290 VRGLPCAHNFHIECIDEWLRL--NVKCPR 316 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~--~~tCP~ 316 (425)
++-..|||+|-+..|.++++. ...||.
T Consensus 25 V~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 25 VKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 555679999999999999944 458998
No 57
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.15 E-value=0.002 Score=57.26 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=21.3
Q ss_pred eEEeccc------cccchhhHHHHHhcCCCCcccc
Q 014400 290 VRGLPCA------HNFHIECIDEWLRLNVKCPRCR 318 (425)
Q Consensus 290 ~~~LpC~------HiFH~~CL~~WL~~~~tCP~CR 318 (425)
++.++|| |+||.+|++.|-+.+..=|.=|
T Consensus 42 vV~vt~~g~lnLEkmfc~~C~~rw~~~~~rDPfnR 76 (134)
T PF05883_consen 42 VVYVTDGGTLNLEKMFCADCDKRWRRERNRDPFNR 76 (134)
T ss_pred EEEEecCCeehHHHHHHHHHHHHHHhhccCCCccc
Confidence 7777777 8999999999954444445444
No 58
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.0042 Score=61.10 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=28.3
Q ss_pred eEEeccccccchhhHHHHHhc--CCCCcccccccCCCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRL--NVKCPRCRCSVFPNL 325 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~--~~tCP~CR~~V~~~~ 325 (425)
....+|||+||.-||..=..- .-+||.|-+++.+-.
T Consensus 253 ~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~lq 290 (298)
T KOG2879|consen 253 HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEPLQ 290 (298)
T ss_pred eeeccccceeehhhhhhhhcchhhcccCccCCCCcchh
Confidence 445679999999999876554 369999999887543
No 59
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.99 E-value=0.0029 Score=67.01 Aligned_cols=41 Identities=34% Similarity=0.640 Sum_probs=31.9
Q ss_pred eEEeccccccchhhHHHHHhc-----CCCCcccccccCCCCchhhc
Q 014400 290 VRGLPCAHNFHIECIDEWLRL-----NVKCPRCRCSVFPNLDLSAL 330 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~-----~~tCP~CR~~V~~~~~~~~~ 330 (425)
+....|.|.||.-||++.+.. +.+||.|-..+.-+....++
T Consensus 549 ~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~al 594 (791)
T KOG1002|consen 549 YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPAL 594 (791)
T ss_pred hHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhh
Confidence 666789999999999998754 67999998877655444443
No 60
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.0067 Score=58.18 Aligned_cols=38 Identities=34% Similarity=0.807 Sum_probs=31.0
Q ss_pred eEEeccccccchhhHHHHHhc--------CCCCcccccccCCCCch
Q 014400 290 VRGLPCAHNFHIECIDEWLRL--------NVKCPRCRCSVFPNLDL 327 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~--------~~tCP~CR~~V~~~~~~ 327 (425)
...|-|-|+||-.|+.+|--. ..+||-|..+|||+..+
T Consensus 65 t~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~Nl 110 (299)
T KOG3970|consen 65 TTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINL 110 (299)
T ss_pred ceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccc
Confidence 345779999999999999542 35899999999997654
No 61
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.85 E-value=0.005 Score=68.39 Aligned_cols=31 Identities=26% Similarity=0.709 Sum_probs=25.4
Q ss_pred eEEeccccccchhhHHHHHhcCCCCcccccccCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 323 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V~~ 323 (425)
.+...|||.||.+|+. +....||.|+-+...
T Consensus 854 ~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~~~ 884 (933)
T KOG2114|consen 854 FVHFLCGHSYHQHCLE---DKEDKCPKCLPELRG 884 (933)
T ss_pred eeeeecccHHHHHhhc---cCcccCCccchhhhh
Confidence 6667799999999998 567799999975443
No 62
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.0044 Score=56.65 Aligned_cols=18 Identities=44% Similarity=0.973 Sum_probs=15.6
Q ss_pred CCCCcCcccccccccCcc
Q 014400 230 TDCSECPICLEEFHVGNE 247 (425)
Q Consensus 230 ~~~~~CaICle~~~~~~~ 247 (425)
++..+|.||||+++.++.
T Consensus 175 ddkGECvICLEdL~~Gdt 192 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGDT 192 (205)
T ss_pred ccCCcEEEEhhhccCCCc
Confidence 455789999999999888
No 63
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.0053 Score=63.41 Aligned_cols=30 Identities=33% Similarity=0.985 Sum_probs=25.0
Q ss_pred eEEeccccccchhhHHHHHhc--------CCCCccccc
Q 014400 290 VRGLPCAHNFHIECIDEWLRL--------NVKCPRCRC 319 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~--------~~tCP~CR~ 319 (425)
.++|||+|+|+..|++..+.. ...||-|..
T Consensus 200 ~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 200 FKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred eeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 889999999999999999864 237987654
No 64
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.30 E-value=0.0083 Score=50.18 Aligned_cols=16 Identities=38% Similarity=0.870 Sum_probs=14.4
Q ss_pred eEEeccccccchhhHH
Q 014400 290 VRGLPCAHNFHIECID 305 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~ 305 (425)
....||||+||..|++
T Consensus 93 f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 93 FVVFPCGHVVHYSCIK 108 (109)
T ss_pred EEEeCCCeEEeccccc
Confidence 7788999999999975
No 65
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.019 Score=58.30 Aligned_cols=74 Identities=26% Similarity=0.468 Sum_probs=56.0
Q ss_pred ccHHHHHHHHHHHHhCCcccc----ccCC-CCCCcCcccccccccCccccccccccCCCCCCCCchhhHHHHHhhhhhcc
Q 014400 205 LTAAQREAVEALIQELPKFRL----KAVP-TDCSECPICLEEFHVGNEWQADVKFYPYGFTSHKPLCKLVHALMFLKEHM 279 (425)
Q Consensus 205 l~~~~rea~~~~i~~Lp~~~~----~~~~-~~~~~CaICle~~~~~~~~~~~~~~~p~~~~s~~~~~r~~~~~~~~~~~~ 279 (425)
+.......++.+++++|..+. ++++ .+++.|+||...-..
T Consensus 390 ~s~~e~~~V~r~~~~l~~~~~~~~~~~lp~sEd~lCpICyA~pi~----------------------------------- 434 (489)
T KOG4692|consen 390 LSNFESHLVNRASSQLPERKEESFNKDLPDSEDNLCPICYAGPIN----------------------------------- 434 (489)
T ss_pred hhHHHHHHHHHHHhhcchhhHHhhcCCCCCcccccCcceecccch-----------------------------------
Confidence 344445557778888887664 3344 466789999864322
Q ss_pred cchhhhhccceEEeccccccchhhHHHHHhcCCCCcccccccCC
Q 014400 280 STSLFLEVLQVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 323 (425)
Q Consensus 280 ~~~~~~~~~~~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V~~ 323 (425)
.+-.||+|.=|..||.+-|-..+.|=.|+..+..
T Consensus 435 ----------Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 435 ----------AVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred ----------hhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 5667999999999999999999999999988864
No 66
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.15 E-value=0.0069 Score=57.08 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=28.1
Q ss_pred eEEeccccccchhhHHHHHhcCCCCccccccc
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 321 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V 321 (425)
++...|||.||..|.-.=++...+|-+|-...
T Consensus 209 pvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 209 PVVTECGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred hhhhhcchhHHHHHHHHHhccCCcceecchhh
Confidence 66678999999999999999999999997654
No 67
>PHA03096 p28-like protein; Provisional
Probab=95.03 E-value=0.0094 Score=59.59 Aligned_cols=29 Identities=31% Similarity=0.527 Sum_probs=21.5
Q ss_pred eEEec-cccccchhhHHHHHhcC---CCCcccc
Q 014400 290 VRGLP-CAHNFHIECIDEWLRLN---VKCPRCR 318 (425)
Q Consensus 290 ~~~Lp-C~HiFH~~CL~~WL~~~---~tCP~CR 318 (425)
--.|+ |.|.|+..|++.|...+ .+||.||
T Consensus 198 fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~ 230 (284)
T PHA03096 198 YGILSEIKHEFNIFCIKIWMTESLYKETEPENR 230 (284)
T ss_pred ccccccCCcHHHHHHHHHHHHhhhhcccCcccc
Confidence 44566 99999999999997653 3455554
No 68
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.99 E-value=0.01 Score=58.94 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=29.0
Q ss_pred eEEeccccccchhhHHHHHhcCCCCcccccccC
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 322 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V~ 322 (425)
++...|+|.|+..|-..=++....|++|-+..-
T Consensus 254 pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 254 PVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred chhhcCCceeehhhhccccccCCcceecccccc
Confidence 666789999999999998999999999987654
No 69
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=94.56 E-value=0.011 Score=59.56 Aligned_cols=30 Identities=30% Similarity=0.738 Sum_probs=27.2
Q ss_pred eccccccchhhHHHHHhcCCCCcccccccC
Q 014400 293 LPCAHNFHIECIDEWLRLNVKCPRCRCSVF 322 (425)
Q Consensus 293 LpC~HiFH~~CL~~WL~~~~tCP~CR~~V~ 322 (425)
.-|=|.||..||...|+.+.+||.|...|-
T Consensus 32 ~eCLHTFCkSCivk~l~~~~~CP~C~i~ih 61 (331)
T KOG2660|consen 32 TECLHTFCKSCIVKYLEESKYCPTCDIVIH 61 (331)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccceecc
Confidence 459999999999999999999999987764
No 70
>PHA02862 5L protein; Provisional
Probab=94.46 E-value=0.023 Score=51.19 Aligned_cols=27 Identities=22% Similarity=0.677 Sum_probs=22.4
Q ss_pred cccchhhHHHHHhc--CCCCcccccccCC
Q 014400 297 HNFHIECIDEWLRL--NVKCPRCRCSVFP 323 (425)
Q Consensus 297 HiFH~~CL~~WL~~--~~tCP~CR~~V~~ 323 (425)
..-|.+||.+|++. +.+||+|+.+..-
T Consensus 26 K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 26 KVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred hhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 46899999999976 4589999987743
No 71
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.43 E-value=0.019 Score=58.62 Aligned_cols=30 Identities=27% Similarity=0.497 Sum_probs=21.0
Q ss_pred eEEeccccccchhhHHHHHhcCCCCcccccccC
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 322 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V~ 322 (425)
.+-+||||+=+ |...- +...+||+||+.+.
T Consensus 318 ~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 318 AVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIR 347 (355)
T ss_pred eeeecCCcEEE--chHHH-hhCCCCchhHHHHH
Confidence 67799999854 55443 23346999998763
No 72
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=94.35 E-value=0.03 Score=51.17 Aligned_cols=26 Identities=31% Similarity=0.712 Sum_probs=21.3
Q ss_pred ccchhhHHHHHhc--CCCCcccccccCC
Q 014400 298 NFHIECIDEWLRL--NVKCPRCRCSVFP 323 (425)
Q Consensus 298 iFH~~CL~~WL~~--~~tCP~CR~~V~~ 323 (425)
.-|.+||+.|+.. ..+|++|+.+..-
T Consensus 33 ~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 33 IVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred HHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 4699999999976 4589999987643
No 73
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=94.28 E-value=0.017 Score=64.38 Aligned_cols=24 Identities=46% Similarity=1.319 Sum_probs=20.3
Q ss_pred cccccchhhHHHHHhcC-------CCCcccc
Q 014400 295 CAHNFHIECIDEWLRLN-------VKCPRCR 318 (425)
Q Consensus 295 C~HiFH~~CL~~WL~~~-------~tCP~CR 318 (425)
|=|+||..||+.|-+.. -.||.|+
T Consensus 213 CYhVFHl~CI~~WArs~ek~~~~~WrCP~Cq 243 (950)
T KOG1952|consen 213 CYHVFHLNCIKKWARSSEKTGQDGWRCPACQ 243 (950)
T ss_pred hhhhhhHHHHHHHHHHhhhccCccccCCccc
Confidence 77999999999997652 1699998
No 74
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.26 E-value=0.014 Score=57.89 Aligned_cols=29 Identities=28% Similarity=0.526 Sum_probs=22.0
Q ss_pred eEEeccccc-cchhhHHHHHhcCCCCcccccccC
Q 014400 290 VRGLPCAHN-FHIECIDEWLRLNVKCPRCRCSVF 322 (425)
Q Consensus 290 ~~~LpC~Hi-FH~~CL~~WL~~~~tCP~CR~~V~ 322 (425)
-.-|+|||+ -+..|=+. -+.||+||+.|.
T Consensus 313 CvfLeCGHmVtCt~CGkr----m~eCPICRqyi~ 342 (350)
T KOG4275|consen 313 CVFLECGHMVTCTKCGKR----MNECPICRQYIV 342 (350)
T ss_pred eEEeecCcEEeehhhccc----cccCchHHHHHH
Confidence 778999995 67777432 348999998774
No 75
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=94.23 E-value=0.032 Score=40.84 Aligned_cols=28 Identities=36% Similarity=0.839 Sum_probs=18.6
Q ss_pred eEEecccc-----ccchhhHHHHHhc--CCCCccc
Q 014400 290 VRGLPCAH-----NFHIECIDEWLRL--NVKCPRC 317 (425)
Q Consensus 290 ~~~LpC~H-----iFH~~CL~~WL~~--~~tCP~C 317 (425)
....||+- .-|..||+.|++. +.+|++|
T Consensus 13 ~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 13 PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp -EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 34567652 6899999999985 5689988
No 76
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.23 E-value=0.029 Score=41.46 Aligned_cols=29 Identities=24% Similarity=0.553 Sum_probs=16.1
Q ss_pred eccccccchhhHHHHHh-cCCCCccccccc
Q 014400 293 LPCAHNFHIECIDEWLR-LNVKCPRCRCSV 321 (425)
Q Consensus 293 LpC~HiFH~~CL~~WL~-~~~tCP~CR~~V 321 (425)
-+||+..+..|...=++ .+..||-||+..
T Consensus 18 C~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 18 CECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp STTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 45999999999888776 477999999863
No 77
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=94.02 E-value=0.024 Score=56.35 Aligned_cols=30 Identities=30% Similarity=0.691 Sum_probs=28.0
Q ss_pred eEEeccccccchhhHHHHHhcCCCCccccc
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRC 319 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~ 319 (425)
+..++|||.-|..|+++-...+.+||+|..
T Consensus 175 ~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 175 AGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 778999999999999999888899999987
No 78
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.73 E-value=0.0055 Score=62.83 Aligned_cols=35 Identities=29% Similarity=0.657 Sum_probs=31.2
Q ss_pred eEEeccccccchhhHHHHHhcCCCCcccccccCCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 324 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V~~~ 324 (425)
...+-|||++|..||+.||.....||.||..++..
T Consensus 213 ~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 213 ISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKN 247 (465)
T ss_pred HHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhh
Confidence 55677999999999999999999999999988644
No 79
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.39 E-value=0.044 Score=54.54 Aligned_cols=32 Identities=31% Similarity=0.665 Sum_probs=27.2
Q ss_pred eEEeccccccchhhHHHHHhc-CCCCccccccc
Q 014400 290 VRGLPCAHNFHIECIDEWLRL-NVKCPRCRCSV 321 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~-~~tCP~CR~~V 321 (425)
++.|.|||.|+..|+..-+.. ...||.||+..
T Consensus 22 p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 22 PRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 778889999999999877665 45799999985
No 80
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=93.31 E-value=0.053 Score=54.95 Aligned_cols=53 Identities=25% Similarity=0.575 Sum_probs=37.8
Q ss_pred CCCCcCcccccccccCccccccccccCCCCCCCCchhhHHHHHhhhhhcccchhhhhccceEEeccccccchhhHHHHHh
Q 014400 230 TDCSECPICLEEFHVGNEWQADVKFYPYGFTSHKPLCKLVHALMFLKEHMSTSLFLEVLQVRGLPCAHNFHIECIDEWLR 309 (425)
Q Consensus 230 ~~~~~CaICle~~~~~~~~~~~~~~~p~~~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~LpC~HiFH~~CL~~WL~ 309 (425)
++++.|+.|+|++...+.. -.-.|||-..|..|...--+
T Consensus 12 deed~cplcie~mditdkn-----------------------------------------f~pc~cgy~ic~fc~~~irq 50 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKN-----------------------------------------FFPCPCGYQICQFCYNNIRQ 50 (480)
T ss_pred cccccCcccccccccccCC-----------------------------------------cccCCcccHHHHHHHHHHHh
Confidence 3446799999999886651 44578998888888544322
Q ss_pred -cCCCCcccccccCC
Q 014400 310 -LNVKCPRCRCSVFP 323 (425)
Q Consensus 310 -~~~tCP~CR~~V~~ 323 (425)
.+..||-||+....
T Consensus 51 ~lngrcpacrr~y~d 65 (480)
T COG5175 51 NLNGRCPACRRKYDD 65 (480)
T ss_pred hccCCChHhhhhccc
Confidence 36789999987643
No 81
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.25 E-value=0.049 Score=54.34 Aligned_cols=30 Identities=40% Similarity=0.771 Sum_probs=24.2
Q ss_pred eEEec-cccccchhhHHHHHhc-CCCCccccc
Q 014400 290 VRGLP-CAHNFHIECIDEWLRL-NVKCPRCRC 319 (425)
Q Consensus 290 ~~~Lp-C~HiFH~~CL~~WL~~-~~tCP~CR~ 319 (425)
++++| |+|.|+.+||..-|.. ...||.|..
T Consensus 287 p~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 287 PMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred cccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 56666 9999999999877654 669999954
No 82
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.20 E-value=0.069 Score=49.72 Aligned_cols=30 Identities=33% Similarity=0.941 Sum_probs=24.7
Q ss_pred eccccccchhhHHHHHhc----CC-------CCcccccccC
Q 014400 293 LPCAHNFHIECIDEWLRL----NV-------KCPRCRCSVF 322 (425)
Q Consensus 293 LpC~HiFH~~CL~~WL~~----~~-------tCP~CR~~V~ 322 (425)
..||.-||.-||..||+. ++ .||+|-.+|-
T Consensus 188 ~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 188 IQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred cccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 459999999999999975 22 5999987764
No 83
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.90 E-value=0.14 Score=50.00 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=30.4
Q ss_pred eEEeccccccchhhHHHHHhcCCCCcccccccCCCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNL 325 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V~~~~ 325 (425)
...-||||+|..+|.+..++....||+|-.++..++
T Consensus 238 a~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrd 273 (303)
T KOG3039|consen 238 AVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRD 273 (303)
T ss_pred EEeccCCcEeeHHHHHHhccccccccCCCCcCcccc
Confidence 344469999999999999999999999988876543
No 84
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=91.39 E-value=0.16 Score=51.80 Aligned_cols=31 Identities=29% Similarity=0.693 Sum_probs=24.2
Q ss_pred eEEeccccccchhhHHHH--HhcCCCCcccccc
Q 014400 290 VRGLPCAHNFHIECIDEW--LRLNVKCPRCRCS 320 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~W--L~~~~tCP~CR~~ 320 (425)
...+||+|.-|.-|--.- |-....||+||..
T Consensus 74 s~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 74 SARYPCGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred EEeccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence 678999999888886443 4457799999964
No 85
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.28 E-value=0.14 Score=52.94 Aligned_cols=29 Identities=24% Similarity=0.529 Sum_probs=24.8
Q ss_pred eEEeccccccchhhHHHHHhcC---CCCcccc
Q 014400 290 VRGLPCAHNFHIECIDEWLRLN---VKCPRCR 318 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~---~tCP~CR 318 (425)
+++|.|||+-...-|..--+.. ..||+|=
T Consensus 350 Pm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP 381 (394)
T KOG2817|consen 350 PMMLICGHVISKDALNRLSKNGSQSFKCPYCP 381 (394)
T ss_pred CeeeeccceecHHHHHHHhhCCCeeeeCCCCC
Confidence 9999999999999998876653 4799993
No 86
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=90.77 E-value=0.38 Score=49.68 Aligned_cols=27 Identities=30% Similarity=1.000 Sum_probs=21.4
Q ss_pred cccccchhhHHHHHhc-------------CCCCccccccc
Q 014400 295 CAHNFHIECIDEWLRL-------------NVKCPRCRCSV 321 (425)
Q Consensus 295 C~HiFH~~CL~~WL~~-------------~~tCP~CR~~V 321 (425)
|.-+.|.+|+-.|+-. +.+||.||.+.
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 6778899999988744 34799999864
No 87
>PF04641 Rtf2: Rtf2 RING-finger
Probab=90.77 E-value=0.22 Score=49.03 Aligned_cols=32 Identities=28% Similarity=0.463 Sum_probs=26.0
Q ss_pred eEEeccccccchhhHHHHHhcCCCCcccccccC
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 322 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V~ 322 (425)
+...||||+|-..||++-- ....||+|-.+..
T Consensus 130 v~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 130 VYLRPCGCVFSEKALKELK-KSKKCPVCGKPFT 161 (260)
T ss_pred EEEcCCCCEeeHHHHHhhc-ccccccccCCccc
Confidence 5556899999999999973 4568999987764
No 88
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=90.57 E-value=0.26 Score=45.20 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=13.6
Q ss_pred CCcccccccCCCCchhhccc
Q 014400 313 KCPRCRCSVFPNLDLSALSN 332 (425)
Q Consensus 313 tCP~CR~~V~~~~~~~~~~~ 332 (425)
.||+||-+|..-........
T Consensus 82 ~CPLCRG~V~GWtvve~AR~ 101 (162)
T PF07800_consen 82 ACPLCRGEVKGWTVVEPARR 101 (162)
T ss_pred cCccccCceeceEEchHHHH
Confidence 69999999976544443333
No 89
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.43 E-value=0.1 Score=50.67 Aligned_cols=30 Identities=27% Similarity=0.514 Sum_probs=24.0
Q ss_pred eEEeccccccchhhHHHHHhcCCCCccccccc
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 321 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V 321 (425)
-..+.|+|+||..|...=. ...||+||..+
T Consensus 18 f~LTaC~HvfC~~C~k~~~--~~~C~lCkk~i 47 (233)
T KOG4739|consen 18 FFLTACRHVFCEPCLKASS--PDVCPLCKKSI 47 (233)
T ss_pred eeeeechhhhhhhhcccCC--cccccccccee
Confidence 6778899999999986522 23899999876
No 90
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=90.37 E-value=0.11 Score=52.08 Aligned_cols=30 Identities=37% Similarity=0.778 Sum_probs=24.1
Q ss_pred eEEeccccccchhhHHHHHhcCCCCccccccc
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 321 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V 321 (425)
-+..||+|+||.+|-+. ...+.||.|-.+|
T Consensus 104 GRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 104 GRMIPCKHVFCLECARS--DSDKICPLCDDRV 133 (389)
T ss_pred ecccccchhhhhhhhhc--CccccCcCcccHH
Confidence 56789999999999864 3456899998766
No 91
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=90.26 E-value=0.12 Score=57.56 Aligned_cols=34 Identities=29% Similarity=0.684 Sum_probs=27.6
Q ss_pred eEEeccccccchhhHHHHHhc--CCCCcccccccCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRL--NVKCPRCRCSVFP 323 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~--~~tCP~CR~~V~~ 323 (425)
....+|+|.|+.+|+..-++. ...||+||..+..
T Consensus 466 ~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 466 FFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred ceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 667889999999999888765 3479999987644
No 92
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=89.51 E-value=0.17 Score=38.42 Aligned_cols=34 Identities=24% Similarity=0.428 Sum_probs=27.4
Q ss_pred ceEEeccccccchhhHHHHHhcCCCCcccccccCCC
Q 014400 289 QVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 324 (425)
Q Consensus 289 ~~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V~~~ 324 (425)
+-..+||||+-...|... ++-+-||.|-..+...
T Consensus 19 ~~~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 19 KGTVLPCGHLICDNCFPG--ERYNGCPFCGTPFEFD 52 (55)
T ss_pred ccccccccceeeccccCh--hhccCCCCCCCcccCC
Confidence 366799999999999765 3667899998888654
No 93
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.67 E-value=0.21 Score=54.33 Aligned_cols=36 Identities=33% Similarity=0.707 Sum_probs=29.0
Q ss_pred eEEeccccccchhhHHHHHhcCCCCcccccccCCCCchh
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLS 328 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V~~~~~~~ 328 (425)
.+..+|. |..|+.+|+..+..||+|++.+.-+....
T Consensus 491 ~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~~~ 526 (543)
T KOG0802|consen 491 ARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDDFLS 526 (543)
T ss_pred hcccccc---chhHHHhhhhhccccCCCchhhhcccccC
Confidence 4456677 99999999999999999998886554433
No 94
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=88.51 E-value=0.32 Score=49.30 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=23.9
Q ss_pred Eec-cccccchhhHHHHHhcCCCCcccccc
Q 014400 292 GLP-CAHNFHIECIDEWLRLNVKCPRCRCS 320 (425)
Q Consensus 292 ~Lp-C~HiFH~~CL~~WL~~~~tCP~CR~~ 320 (425)
.+. -|-+||..|+-..+..+..||+=-.+
T Consensus 315 vl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p 344 (357)
T KOG0826|consen 315 VLEVSGYVFCYPCIFSYVVNYGHCPVTGYP 344 (357)
T ss_pred eEEecceEEeHHHHHHHHHhcCCCCccCCc
Confidence 344 58999999999999999999975433
No 95
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.10 E-value=0.25 Score=54.75 Aligned_cols=25 Identities=36% Similarity=0.784 Sum_probs=22.4
Q ss_pred EeccccccchhhHHHHHhcCCCCcc
Q 014400 292 GLPCAHNFHIECIDEWLRLNVKCPR 316 (425)
Q Consensus 292 ~LpC~HiFH~~CL~~WL~~~~tCP~ 316 (425)
..-|+|+-|..|.++|++....||.
T Consensus 1045 Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1045 CGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred hccccccccHHHHHHHHhcCCcCCC
Confidence 3459999999999999999999994
No 96
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.28 E-value=0.27 Score=55.43 Aligned_cols=19 Identities=32% Similarity=0.807 Sum_probs=16.7
Q ss_pred eEEeccccccchhhHHHHH
Q 014400 290 VRGLPCAHNFHIECIDEWL 308 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL 308 (425)
-.+-||||.||..||..-.
T Consensus 832 F~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 832 FYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred ceeeeccchHHHHHHHHHH
Confidence 6778999999999998765
No 97
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.02 E-value=0.48 Score=45.39 Aligned_cols=29 Identities=34% Similarity=0.575 Sum_probs=22.9
Q ss_pred eEEecccc-ccchhhHHHHHhcCCCCcccccccC
Q 014400 290 VRGLPCAH-NFHIECIDEWLRLNVKCPRCRCSVF 322 (425)
Q Consensus 290 ~~~LpC~H-iFH~~CL~~WL~~~~tCP~CR~~V~ 322 (425)
+..+||.| ++|..|=+. -.+||+|+..+.
T Consensus 171 VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 171 VLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred EEeecccceEeccccccc----CccCCCCcChhh
Confidence 88999998 699999654 446999986653
No 98
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=83.30 E-value=0.7 Score=46.69 Aligned_cols=30 Identities=23% Similarity=0.452 Sum_probs=22.5
Q ss_pred eEEeccccccchhhHHHHHhcCCCCcccccccC
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 322 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V~ 322 (425)
+..-+=||+-+..|=. +.+..||.||.++.
T Consensus 62 i~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 62 IFQCDNGHLACSSCRT---KVSNKCPTCRLPIG 91 (299)
T ss_pred ceecCCCcEehhhhhh---hhcccCCccccccc
Confidence 3333337999998865 57889999998886
No 99
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=83.07 E-value=0.59 Score=33.60 Aligned_cols=23 Identities=35% Similarity=1.055 Sum_probs=16.1
Q ss_pred cccccchhhHHHHHhcCC--CCccc
Q 014400 295 CAHNFHIECIDEWLRLNV--KCPRC 317 (425)
Q Consensus 295 C~HiFH~~CL~~WL~~~~--tCP~C 317 (425)
|+=.+|..|++.+++.+. .||.|
T Consensus 19 C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 19 CNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred cCchHHHHHHHHHHhcCCCCCCcCC
Confidence 777899999999998865 79988
No 100
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=81.40 E-value=1.5 Score=33.29 Aligned_cols=38 Identities=26% Similarity=0.815 Sum_probs=29.3
Q ss_pred CcCcccccccccCccccccccccCCCCCCCCchhhHHHHHhhhhhcccchhhhhccceEEec-cccccchhhHHHHHhcC
Q 014400 233 SECPICLEEFHVGNEWQADVKFYPYGFTSHKPLCKLVHALMFLKEHMSTSLFLEVLQVRGLP-CAHNFHIECIDEWLRLN 311 (425)
Q Consensus 233 ~~CaICle~~~~~~~~~~~~~~~p~~~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Lp-C~HiFH~~CL~~WL~~~ 311 (425)
..|++|.+.|..+++ ++.-| ||=.+|++|.+. .
T Consensus 6 ~~C~~Cg~~~~~~dD------------------------------------------iVvCp~CgapyHR~C~~~----~ 39 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDD------------------------------------------IVVCPECGAPYHRDCWEK----A 39 (54)
T ss_pred ccChhhCCcccCCCC------------------------------------------EEECCCCCCcccHHHHhh----C
Confidence 569999999987666 66677 999999999643 4
Q ss_pred CCCcc
Q 014400 312 VKCPR 316 (425)
Q Consensus 312 ~tCP~ 316 (425)
..|-+
T Consensus 40 g~C~~ 44 (54)
T PF14446_consen 40 GGCIN 44 (54)
T ss_pred CceEe
Confidence 45544
No 101
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=79.77 E-value=0.96 Score=44.80 Aligned_cols=33 Identities=24% Similarity=0.709 Sum_probs=24.6
Q ss_pred EEeccc-----cccchhhHHHHHh--cCCCCcccccccCC
Q 014400 291 RGLPCA-----HNFHIECIDEWLR--LNVKCPRCRCSVFP 323 (425)
Q Consensus 291 ~~LpC~-----HiFH~~CL~~WL~--~~~tCP~CR~~V~~ 323 (425)
.+.||. +..|..|++.|+. .+..|.+|......
T Consensus 96 l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 96 LISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN 135 (323)
T ss_pred cccCccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence 345654 4579999999998 45689999875543
No 102
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=78.89 E-value=0.56 Score=54.94 Aligned_cols=28 Identities=29% Similarity=0.773 Sum_probs=25.4
Q ss_pred eccccccchhhHHHHHhcCCCCcccccc
Q 014400 293 LPCAHNFHIECIDEWLRLNVKCPRCRCS 320 (425)
Q Consensus 293 LpC~HiFH~~CL~~WL~~~~tCP~CR~~ 320 (425)
.-|||-++..|...|+..+..||.|+..
T Consensus 1170 ~~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1170 AGCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred eeechhHhhhHHHHHHHHhccCcchhhh
Confidence 4599999999999999999999999843
No 103
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.31 E-value=0.67 Score=50.75 Aligned_cols=27 Identities=26% Similarity=0.613 Sum_probs=21.6
Q ss_pred eEEeccccccchhhHHHHHhcCCCCccccc
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRC 319 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~ 319 (425)
++-|-|||.-|..|+..- .+.+|| |+.
T Consensus 28 Pvsl~cghtic~~c~~~l--yn~scp-~~~ 54 (861)
T KOG3161|consen 28 PVSLQCGHTICGHCVQLL--YNASCP-TKR 54 (861)
T ss_pred cccccccchHHHHHHHhH--hhccCC-CCc
Confidence 677889999999999763 477899 643
No 104
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=76.74 E-value=1.6 Score=49.20 Aligned_cols=24 Identities=33% Similarity=0.815 Sum_probs=20.1
Q ss_pred ccchhhHHHHHhc--CCCCccccccc
Q 014400 298 NFHIECIDEWLRL--NVKCPRCRCSV 321 (425)
Q Consensus 298 iFH~~CL~~WL~~--~~tCP~CR~~V 321 (425)
--|.+||.+|+.- ...|-+|..+.
T Consensus 40 YiH~eCL~eW~~~s~~~kCdiChy~~ 65 (1175)
T COG5183 40 YIHRECLMEWMECSGTKKCDICHYEY 65 (1175)
T ss_pred HHHHHHHHHHHhcCCCcceeeeccee
Confidence 3899999999986 45799999665
No 105
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.74 E-value=1.3 Score=46.33 Aligned_cols=20 Identities=25% Similarity=0.775 Sum_probs=16.9
Q ss_pred EeccccccchhhHHHHHhcC
Q 014400 292 GLPCAHNFHIECIDEWLRLN 311 (425)
Q Consensus 292 ~LpC~HiFH~~CL~~WL~~~ 311 (425)
...|+|.|+.+|+++-++.+
T Consensus 165 ~~~C~H~fC~~C~k~~iev~ 184 (384)
T KOG1812|consen 165 VLKCGHRFCKDCVKQHIEVK 184 (384)
T ss_pred HhcccchhhhHHhHHHhhhh
Confidence 45699999999999988753
No 106
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=76.68 E-value=0.82 Score=49.96 Aligned_cols=25 Identities=36% Similarity=0.826 Sum_probs=19.0
Q ss_pred eEEeccccccchhhHHHHHhcCCCCccc
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRC 317 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~C 317 (425)
.+-.-|+++||..|++. ++.-||.|
T Consensus 532 ~rC~~C~avfH~~C~~r---~s~~CPrC 556 (580)
T KOG1829|consen 532 RRCSTCLAVFHKKCLRR---KSPCCPRC 556 (580)
T ss_pred eeHHHHHHHHHHHHHhc---cCCCCCch
Confidence 34455999999999754 45559999
No 107
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=76.39 E-value=5.6 Score=42.04 Aligned_cols=16 Identities=38% Similarity=0.719 Sum_probs=14.5
Q ss_pred eEEeccccccchhhHH
Q 014400 290 VRGLPCAHNFHIECID 305 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~ 305 (425)
+..|||+|..|..|-.
T Consensus 17 piil~c~h~lc~~ca~ 32 (699)
T KOG4367|consen 17 PIILPCSHNLCQACAR 32 (699)
T ss_pred ceEeecccHHHHHHHH
Confidence 7889999999999977
No 108
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=75.88 E-value=2.1 Score=42.89 Aligned_cols=32 Identities=25% Similarity=0.663 Sum_probs=25.5
Q ss_pred eEEeccccccchhhHHHHHhcC-CCCccccccc
Q 014400 290 VRGLPCAHNFHIECIDEWLRLN-VKCPRCRCSV 321 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~-~tCP~CR~~V 321 (425)
.+.=+|+|..|.+|.+.-+..+ ..||-|-..+
T Consensus 18 ~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iL 50 (300)
T KOG3800|consen 18 LMINECGHRLCESCVDRIFSLGPAQCPECMVIL 50 (300)
T ss_pred eeeccccchHHHHHHHHHHhcCCCCCCcccchh
Confidence 3444899999999999988775 4899996544
No 109
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.79 E-value=2 Score=43.16 Aligned_cols=27 Identities=22% Similarity=0.640 Sum_probs=21.4
Q ss_pred cccccchhhHHHHHh-------------cCCCCccccccc
Q 014400 295 CAHNFHIECIDEWLR-------------LNVKCPRCRCSV 321 (425)
Q Consensus 295 C~HiFH~~CL~~WL~-------------~~~tCP~CR~~V 321 (425)
|.-+.|.+||-.|+- .+-+||.||.+.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~f 364 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNF 364 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhce
Confidence 667788999998863 345899999875
No 110
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.34 E-value=1.7 Score=42.87 Aligned_cols=25 Identities=28% Similarity=0.893 Sum_probs=20.5
Q ss_pred cccchhhHHHHHhcC--------CCCccccccc
Q 014400 297 HNFHIECIDEWLRLN--------VKCPRCRCSV 321 (425)
Q Consensus 297 HiFH~~CL~~WL~~~--------~tCP~CR~~V 321 (425)
|--|..||..|+..+ .+||-|+.+.
T Consensus 49 KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 49 KWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred HHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 779999999998653 2799999754
No 111
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=70.86 E-value=2.6 Score=40.06 Aligned_cols=24 Identities=33% Similarity=0.930 Sum_probs=18.7
Q ss_pred eEEec-cccccchhhHHHHHhcCCCCcccc
Q 014400 290 VRGLP-CAHNFHIECIDEWLRLNVKCPRCR 318 (425)
Q Consensus 290 ~~~Lp-C~HiFH~~CL~~WL~~~~tCP~CR 318 (425)
+..-+ |+-+||..|.. +..||.|-
T Consensus 172 ~~~C~~C~~v~H~~C~~-----~~~CpkC~ 196 (202)
T PF13901_consen 172 TVRCPKCKSVFHKSCFR-----KKSCPKCA 196 (202)
T ss_pred eeeCCcCccccchhhcC-----CCCCCCcH
Confidence 44444 99999999976 26799994
No 112
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=70.03 E-value=3.5 Score=46.20 Aligned_cols=22 Identities=23% Similarity=0.626 Sum_probs=20.7
Q ss_pred cccccchhhHHHHHhcCCCCcc
Q 014400 295 CAHNFHIECIDEWLRLNVKCPR 316 (425)
Q Consensus 295 C~HiFH~~CL~~WL~~~~tCP~ 316 (425)
|||.=|.+|+++|+..+..||.
T Consensus 799 C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 799 CGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred ccccccHHHHHHHHhcCCCCcc
Confidence 9999999999999999988876
No 113
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.14 E-value=2 Score=48.15 Aligned_cols=28 Identities=29% Similarity=0.415 Sum_probs=22.3
Q ss_pred eEEeccccccchhhHHHHHhcCCCCcccc
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCR 318 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR 318 (425)
+..+-|||+||+.|+..-+.+++ |-.|-
T Consensus 804 ~~v~~c~h~yhk~c~~~~~~~~~-~~~~~ 831 (846)
T KOG2066|consen 804 VVVFHCGHMYHKECLMMESLRNA-CNIES 831 (846)
T ss_pred eeEEEccchhhhcccccHHHhcc-cChhh
Confidence 78899999999999977766655 65553
No 114
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=68.74 E-value=1.4 Score=32.63 Aligned_cols=30 Identities=37% Similarity=0.645 Sum_probs=14.6
Q ss_pred eEEeccccccchhhHHHHHhcCC-----CCcccccc
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNV-----KCPRCRCS 320 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~-----tCP~CR~~ 320 (425)
++...|.|.-+ .=++.||+.+. .||+|.++
T Consensus 16 ~Rg~~C~H~~C-FDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 16 VRGKNCKHLQC-FDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp EEETT--SS---EEHHHHHHHHHHS---B-TTT---
T ss_pred ccCCcCcccce-ECHHHHHHHhhccCCeECcCCcCc
Confidence 66777999743 23567776532 69999763
No 115
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=68.44 E-value=2.2 Score=31.57 Aligned_cols=32 Identities=22% Similarity=0.628 Sum_probs=22.8
Q ss_pred eccc-cccchhhHHHHHhcCCCCcccccccCCC
Q 014400 293 LPCA-HNFHIECIDEWLRLNVKCPRCRCSVFPN 324 (425)
Q Consensus 293 LpC~-HiFH~~CL~~WL~~~~tCP~CR~~V~~~ 324 (425)
..|. |-.+..||..-|.....||+|.++++.+
T Consensus 16 i~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 16 IKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp EE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred eeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 3475 9999999999999999999999988764
No 116
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=64.57 E-value=4.6 Score=41.02 Aligned_cols=29 Identities=28% Similarity=0.501 Sum_probs=23.3
Q ss_pred eEEeccccccchhhHHHHHhcC---CCCcccc
Q 014400 290 VRGLPCAHNFHIECIDEWLRLN---VKCPRCR 318 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~---~tCP~CR 318 (425)
++.|.|||+.-.+-++.--+.. -.||+|-
T Consensus 352 P~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 352 PVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred CeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 8889999999999988754442 3799993
No 117
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=64.10 E-value=2 Score=47.81 Aligned_cols=34 Identities=21% Similarity=0.488 Sum_probs=24.9
Q ss_pred eEEeccccccchhhHHHHHhc---CCCCcccccccCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRL---NVKCPRCRCSVFP 323 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~---~~tCP~CR~~V~~ 323 (425)
...+.|-|+|+..|+-.=+.. ...||+|+..+..
T Consensus 34 p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 34 PSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred cchhhhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 445779999999998655444 4589999966643
No 118
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=63.99 E-value=2.3 Score=42.75 Aligned_cols=8 Identities=13% Similarity=-0.093 Sum_probs=0.0
Q ss_pred Cccccccc
Q 014400 314 CPRCRCSV 321 (425)
Q Consensus 314 CP~CR~~V 321 (425)
=|+|.+..
T Consensus 234 pP~~SQn~ 241 (381)
T PF05297_consen 234 PPYVSQNG 241 (381)
T ss_dssp --------
T ss_pred CCcccccC
Confidence 36776655
No 119
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=59.20 E-value=4.7 Score=40.24 Aligned_cols=25 Identities=28% Similarity=0.580 Sum_probs=13.3
Q ss_pred ccccchhhHHHHHhcCCCCcccccc
Q 014400 296 AHNFHIECIDEWLRLNVKCPRCRCS 320 (425)
Q Consensus 296 ~HiFH~~CL~~WL~~~~tCP~CR~~ 320 (425)
.|.+|..|=.+|--.+..||.|-..
T Consensus 196 R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 196 RYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp EEEEETTT--EEE--TTS-TTT---
T ss_pred EEEEcCCCCCeeeecCCCCcCCCCC
Confidence 3456677888887788899999543
No 120
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=55.55 E-value=5.2 Score=25.77 Aligned_cols=11 Identities=27% Similarity=0.700 Sum_probs=8.1
Q ss_pred eEEec-cccccc
Q 014400 290 VRGLP-CAHNFH 300 (425)
Q Consensus 290 ~~~Lp-C~HiFH 300 (425)
.+.-| |||.|-
T Consensus 14 ~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 14 AKFCPHCGYDFE 25 (26)
T ss_pred cCcCCCCCCCCc
Confidence 55667 999984
No 121
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=55.52 E-value=6.6 Score=44.35 Aligned_cols=28 Identities=14% Similarity=0.084 Sum_probs=23.4
Q ss_pred cccccchhhHHHHHhc------CCCCcccccccC
Q 014400 295 CAHNFHIECIDEWLRL------NVKCPRCRCSVF 322 (425)
Q Consensus 295 C~HiFH~~CL~~WL~~------~~tCP~CR~~V~ 322 (425)
|+|.||-.||..|... +-.|+.|...+.
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 9999999999999754 447899987764
No 122
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=54.31 E-value=13 Score=36.22 Aligned_cols=27 Identities=19% Similarity=0.487 Sum_probs=18.8
Q ss_pred HHHHHHhhhhhhhhheeee---EEEEEeec
Q 014400 87 VLSILSLLLYPFLWAWTII---GTLWFTSA 113 (425)
Q Consensus 87 v~~~~~l~l~pf~~~w~i~---g~v~~~~~ 113 (425)
.+++.++|++.|+++|.+. .-+|..=+
T Consensus 153 ~~~laivRlilf~i~w~~~~g~~~fWlfPN 182 (224)
T PF03839_consen 153 FFALAIVRLILFLITWFFTGGKHGFWLFPN 182 (224)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEEeCCc
Confidence 3455568888899999887 45666543
No 123
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=53.37 E-value=7.6 Score=34.13 Aligned_cols=7 Identities=14% Similarity=0.719 Sum_probs=3.1
Q ss_pred hhhhHHH
Q 014400 124 WGFLIWL 130 (425)
Q Consensus 124 ~~~li~~ 130 (425)
|.+++.+
T Consensus 2 W~l~~ii 8 (130)
T PF12273_consen 2 WVLFAII 8 (130)
T ss_pred eeeHHHH
Confidence 4444443
No 124
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=52.44 E-value=10 Score=37.28 Aligned_cols=29 Identities=28% Similarity=0.718 Sum_probs=23.2
Q ss_pred eEEec-cccccchhhHHHHHhcC-CCCc--ccc
Q 014400 290 VRGLP-CAHNFHIECIDEWLRLN-VKCP--RCR 318 (425)
Q Consensus 290 ~~~Lp-C~HiFH~~CL~~WL~~~-~tCP--~CR 318 (425)
...-| |=|..|.+|++.-+.+. ..|| -|-
T Consensus 28 ~linPECyHrmCESCvdRIFs~GpAqCP~~gC~ 60 (314)
T COG5220 28 ILINPECYHRMCESCVDRIFSRGPAQCPYKGCG 60 (314)
T ss_pred EEECHHHHHHHHHHHHHHHhcCCCCCCCCccHH
Confidence 33446 99999999999998875 5899 674
No 125
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=49.95 E-value=13 Score=24.53 Aligned_cols=19 Identities=32% Similarity=0.845 Sum_probs=14.3
Q ss_pred cccccchhhHHHHHhcCCCCccccccc
Q 014400 295 CAHNFHIECIDEWLRLNVKCPRCRCSV 321 (425)
Q Consensus 295 C~HiFH~~CL~~WL~~~~tCP~CR~~V 321 (425)
=+..||..|. .|..|+..+
T Consensus 19 ~~~~~H~~Cf--------~C~~C~~~L 37 (39)
T smart00132 19 LGKVWHPECF--------KCSKCGKPL 37 (39)
T ss_pred CCccccccCC--------CCcccCCcC
Confidence 3678999886 588887665
No 126
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=49.84 E-value=18 Score=37.07 Aligned_cols=30 Identities=23% Similarity=0.528 Sum_probs=23.8
Q ss_pred eccccccchhhHHHHHhcCCCCcccccccC
Q 014400 293 LPCAHNFHIECIDEWLRLNVKCPRCRCSVF 322 (425)
Q Consensus 293 LpC~HiFH~~CL~~WL~~~~tCP~CR~~V~ 322 (425)
-||+|.-|..|+..=...+.+||.||....
T Consensus 269 ~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 269 CPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred ccccccchhhhhhcccccCCCCCccCCccc
Confidence 458888888888887778889999994443
No 127
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=49.09 E-value=5.7 Score=41.55 Aligned_cols=28 Identities=29% Similarity=0.541 Sum_probs=0.0
Q ss_pred eEEeccccccchhhHHHHHhc------CCCCcccccc
Q 014400 290 VRGLPCAHNFHIECIDEWLRL------NVKCPRCRCS 320 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~------~~tCP~CR~~ 320 (425)
.+-|.|||++..+ .|-.. ..+||+||..
T Consensus 304 ~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 304 WVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp -------------------------------------
T ss_pred eeeccccceeeec---ccccccccccccccCCCcccc
Confidence 6678899987643 46432 4589999853
No 128
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.33 E-value=21 Score=36.88 Aligned_cols=27 Identities=22% Similarity=0.560 Sum_probs=19.5
Q ss_pred HHHHHHhhhhhhhhheeeeE---EEEEeec
Q 014400 87 VLSILSLLLYPFLWAWTIIG---TLWFTSA 113 (425)
Q Consensus 87 v~~~~~l~l~pf~~~w~i~g---~v~~~~~ 113 (425)
++.+.++|++.|.++|.++| -+|+.-+
T Consensus 232 IlvLaIvRlILF~I~~il~~g~~g~W~FPN 261 (372)
T KOG2927|consen 232 ILVLAIVRLILFGITWILTGGKHGFWLFPN 261 (372)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCceEeccc
Confidence 33445589999999999876 6666644
No 129
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=46.45 E-value=8.6 Score=38.26 Aligned_cols=27 Identities=30% Similarity=0.731 Sum_probs=20.6
Q ss_pred cccccchhhHHHHH-hc--------CCCCccccccc
Q 014400 295 CAHNFHIECIDEWL-RL--------NVKCPRCRCSV 321 (425)
Q Consensus 295 C~HiFH~~CL~~WL-~~--------~~tCP~CR~~V 321 (425)
|+-++|..||-+-+ .. ...||.|+..+
T Consensus 207 c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 207 CDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred CCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 88899999998833 22 34799998754
No 130
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.08 E-value=10 Score=40.23 Aligned_cols=35 Identities=34% Similarity=0.745 Sum_probs=25.4
Q ss_pred eEEeccccccchhhHHHHHhcC--------CCCc--ccccccCCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRLN--------VKCP--RCRCSVFPN 324 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~--------~tCP--~CR~~V~~~ 324 (425)
...+.|||.|+..|+...+..+ .+|| -|+..+..+
T Consensus 84 ~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~ 128 (444)
T KOG1815|consen 84 IIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGED 128 (444)
T ss_pred hhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCc
Confidence 5668899999999999998752 2454 566655443
No 131
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=43.39 E-value=10 Score=36.49 Aligned_cols=28 Identities=32% Similarity=0.780 Sum_probs=23.9
Q ss_pred EEeccccccchhhHHHHHhcCCCCcccc
Q 014400 291 RGLPCAHNFHIECIDEWLRLNVKCPRCR 318 (425)
Q Consensus 291 ~~LpC~HiFH~~CL~~WL~~~~tCP~CR 318 (425)
+.=.||-.+|..|+...+.+...||.|.
T Consensus 196 rCg~c~i~~h~~c~qty~q~~~~cphc~ 223 (235)
T KOG4718|consen 196 RCGSCNIQYHRGCIQTYLQRRDICPHCG 223 (235)
T ss_pred ccCcccchhhhHHHHHHhcccCcCCchh
Confidence 3334777899999999999999999994
No 132
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=42.91 E-value=45 Score=30.47 Aligned_cols=46 Identities=15% Similarity=0.109 Sum_probs=26.5
Q ss_pred cccCCCCCCchhhhHHHHHHHH--HHHHHHHHhhhhhhhcchhhhhhh
Q 014400 114 RDCLPEEGQKWGFLIWLLFSYC--GLLCIACMSMGKWLTRRQAHSIRA 159 (425)
Q Consensus 114 ~~~l~~~~~~~~~li~~v~~~~--~ll~i~~i~~~~~~~~r~~~~~r~ 159 (425)
..||...++.-||..++.++.+ +++++.++++..|+.+|+++...+
T Consensus 15 ~ecls~~~~psffsthm~tILiaIvVliiiiivli~lcssRKkKaaAA 62 (189)
T PF05568_consen 15 GECLSPVTPPSFFSTHMYTILIAIVVLIIIIIVLIYLCSSRKKKAAAA 62 (189)
T ss_pred hhhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhh
Confidence 3677666665555444333333 345666666777887776655444
No 133
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=42.01 E-value=8.5 Score=38.79 Aligned_cols=8 Identities=50% Similarity=0.845 Sum_probs=0.0
Q ss_pred cccccccc
Q 014400 29 NWKRYHLC 36 (425)
Q Consensus 29 ~w~~~~~c 36 (425)
=.||+..|
T Consensus 71 lF~RrLLC 78 (381)
T PF05297_consen 71 LFKRRLLC 78 (381)
T ss_dssp --------
T ss_pred HHHHhhcC
Confidence 34555555
No 134
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=41.99 E-value=4.2 Score=29.39 Aligned_cols=26 Identities=31% Similarity=0.719 Sum_probs=18.8
Q ss_pred ccccccchhhHHHHHh------cCCCCccccc
Q 014400 294 PCAHNFHIECIDEWLR------LNVKCPRCRC 319 (425)
Q Consensus 294 pC~HiFH~~CL~~WL~------~~~tCP~CR~ 319 (425)
.|+..||..|+..=.+ ..-.||.|+.
T Consensus 19 ~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 19 SCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp TTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred CCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 3888999999865433 1347998874
No 135
>PF10624 TraS: Plasmid conjugative transfer entry exclusion protein TraS; InterPro: IPR018898 Entry exclusion (Eex) is a process which prevents redundant transfer of DNA between donor cells. TraS is a protein involved in Eex. It blocks redundant conjugative DNA synthesis and transport between donor cells, and it is suggested that TraS interferes with a signalling pathway that is required to trigger DNA transfer []. TraS on the recipient cell is known to form an interaction with TraG on the donor cell [].
Probab=41.81 E-value=63 Score=29.13 Aligned_cols=43 Identities=16% Similarity=0.345 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhhhcccCCCCchhhhhhccccchhHHHHHHHHhhhhhhhhhee
Q 014400 49 TTVFVFRLLMFVDNGLASGMGLDLGWQQRYARFCGRVVVLSILSLLLYPFLWAWT 103 (425)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~v~~~~~l~l~pf~~~w~ 103 (425)
+-+.+-.+..||..+||. |+.-..+.++..++|+.-.|+|...
T Consensus 5 ~~i~lv~viQfIaCyLAg------------W~~aET~fil~f~~lWqglFiwlF~ 47 (164)
T PF10624_consen 5 AHIALVTVIQFIACYLAG------------WGVAETIFILLFIVLWQGLFIWLFI 47 (164)
T ss_pred HHHHHHHHHHHHHHHHhc------------cCccchHHHHHHHHHHHHHHHHHHH
Confidence 346677788999999997 2333344555555566666665443
No 136
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=41.81 E-value=22 Score=36.31 Aligned_cols=31 Identities=29% Similarity=0.467 Sum_probs=18.5
Q ss_pred eEEeccccc--cchhhHHHHHh-cCCCCcccccc
Q 014400 290 VRGLPCAHN--FHIECIDEWLR-LNVKCPRCRCS 320 (425)
Q Consensus 290 ~~~LpC~Hi--FH~~CL~~WL~-~~~tCP~CR~~ 320 (425)
..-|.|||+ +|.+=.++=-. +...||+||..
T Consensus 317 ~vYl~CGHV~G~H~WG~~e~~g~~~r~CPmC~~~ 350 (429)
T KOG3842|consen 317 WVYLNCGHVHGYHNWGVRENTGQRERECPMCRVV 350 (429)
T ss_pred eEEEeccccccccccccccccCcccCcCCeeeee
Confidence 677899997 55432222111 13479999853
No 137
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=40.71 E-value=22 Score=36.30 Aligned_cols=21 Identities=33% Similarity=0.740 Sum_probs=16.1
Q ss_pred cchhhHHHHHhcCCCCccccc
Q 014400 299 FHIECIDEWLRLNVKCPRCRC 319 (425)
Q Consensus 299 FH~~CL~~WL~~~~tCP~CR~ 319 (425)
.|..|=.+|--.+..||.|-.
T Consensus 214 ~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 214 HCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred EcCCCCCcccccCccCCCCCC
Confidence 445566778778999999974
No 138
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=40.00 E-value=6 Score=29.39 Aligned_cols=13 Identities=31% Similarity=0.718 Sum_probs=9.6
Q ss_pred CCcCccccccccc
Q 014400 232 CSECPICLEEFHV 244 (425)
Q Consensus 232 ~~~CaICle~~~~ 244 (425)
.+.||.|.+++..
T Consensus 2 ~f~CP~C~~~~~~ 14 (54)
T PF05605_consen 2 SFTCPYCGKGFSE 14 (54)
T ss_pred CcCCCCCCCccCH
Confidence 3679999996543
No 139
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=39.20 E-value=16 Score=40.17 Aligned_cols=13 Identities=54% Similarity=1.216 Sum_probs=11.1
Q ss_pred CCcCccccccccc
Q 014400 232 CSECPICLEEFHV 244 (425)
Q Consensus 232 ~~~CaICle~~~~ 244 (425)
...|+||.|.|++
T Consensus 513 ~~~C~IC~EkFe~ 525 (579)
T KOG2071|consen 513 QASCPICQEKFEV 525 (579)
T ss_pred ccCCcccccccce
Confidence 4579999999986
No 140
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=37.36 E-value=36 Score=30.63 Aligned_cols=29 Identities=28% Similarity=0.684 Sum_probs=21.4
Q ss_pred cccccchhhH-HHHH--hcCCCCcccccccCC
Q 014400 295 CAHNFHIECI-DEWL--RLNVKCPRCRCSVFP 323 (425)
Q Consensus 295 C~HiFH~~CL-~~WL--~~~~tCP~CR~~V~~ 323 (425)
||-..+.-|- .-|- ..+..||.|+.+...
T Consensus 102 CgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 102 CGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred cchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 8987777775 5563 247799999988754
No 141
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=36.40 E-value=15 Score=25.25 Aligned_cols=14 Identities=29% Similarity=0.994 Sum_probs=11.3
Q ss_pred cCcccccccccCcc
Q 014400 234 ECPICLEEFHVGNE 247 (425)
Q Consensus 234 ~CaICle~~~~~~~ 247 (425)
+|+=|.-.|..+++
T Consensus 4 ~Cp~C~~~y~i~d~ 17 (36)
T PF13717_consen 4 TCPNCQAKYEIDDE 17 (36)
T ss_pred ECCCCCCEEeCCHH
Confidence 58899999988655
No 142
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=35.37 E-value=45 Score=32.69 Aligned_cols=19 Identities=16% Similarity=0.326 Sum_probs=13.2
Q ss_pred HHHHHhhhhhhhhheeeeE
Q 014400 88 LSILSLLLYPFLWAWTIIG 106 (425)
Q Consensus 88 ~~~~~l~l~pf~~~w~i~g 106 (425)
+++.++|++.|+++|.+.|
T Consensus 162 ~~laivRlilF~i~~~~~g 180 (232)
T TIGR00869 162 FAVAILRLILFVLTLIVVK 180 (232)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 4455578888888887754
No 143
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=32.96 E-value=32 Score=25.07 Aligned_cols=24 Identities=25% Similarity=0.567 Sum_probs=19.2
Q ss_pred ccccccchhhHHHHHhcCCCCcccccccCCCC
Q 014400 294 PCAHNFHIECIDEWLRLNVKCPRCRCSVFPNL 325 (425)
Q Consensus 294 pC~HiFH~~CL~~WL~~~~tCP~CR~~V~~~~ 325 (425)
.-|..||..|+ +|=.|+..+.+..
T Consensus 17 ~~~~~~H~~Cf--------~C~~C~~~l~~~~ 40 (58)
T PF00412_consen 17 AMGKFWHPECF--------KCSKCGKPLNDGD 40 (58)
T ss_dssp ETTEEEETTTS--------BETTTTCBTTTSS
T ss_pred eCCcEEEcccc--------ccCCCCCccCCCe
Confidence 57889999886 6999998886543
No 144
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.36 E-value=47 Score=33.74 Aligned_cols=29 Identities=31% Similarity=0.777 Sum_probs=26.6
Q ss_pred cccccchhhHHHHHhcCCCCcccccccCC
Q 014400 295 CAHNFHIECIDEWLRLNVKCPRCRCSVFP 323 (425)
Q Consensus 295 C~HiFH~~CL~~WL~~~~tCP~CR~~V~~ 323 (425)
|.|-|...|..+|.+....||-||....+
T Consensus 124 ~w~qf~~~~p~~~~~~~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 124 CWHQFCYVCPKSNFAMGNDCPDCRGKISP 152 (324)
T ss_pred ceeeeeecCCchhhhhhhccchhhcCcCc
Confidence 99999999999999999999999987654
No 145
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=32.29 E-value=24 Score=39.81 Aligned_cols=40 Identities=30% Similarity=0.872 Sum_probs=20.6
Q ss_pred HHHhhhhhhhhheee------eEEEEEeeccccCCCCCCchhhhHHHHHHHH
Q 014400 90 ILSLLLYPFLWAWTI------IGTLWFTSARDCLPEEGQKWGFLIWLLFSYC 135 (425)
Q Consensus 90 ~~~l~l~pf~~~w~i------~g~v~~~~~~~~l~~~~~~~~~li~~v~~~~ 135 (425)
++-++++|.-|.+++ +.+||.+...-|+|. +++|++|+|+
T Consensus 88 ~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~~~~~~ 133 (697)
T PF09726_consen 88 LICLFFIPVHWLFFAASTYVWVQYVWHTDRGICLPT------VSLWILFVYV 133 (697)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhhccCCccHHH------HHHHHHHHHH
Confidence 444556664444432 566777665455443 3445444444
No 146
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=32.12 E-value=23 Score=36.04 Aligned_cols=21 Identities=33% Similarity=0.733 Sum_probs=15.9
Q ss_pred cchhhHHHHHhcCCCCccccc
Q 014400 299 FHIECIDEWLRLNVKCPRCRC 319 (425)
Q Consensus 299 FH~~CL~~WL~~~~tCP~CR~ 319 (425)
+|..|=.+|--.+..||.|-.
T Consensus 212 ~CslC~teW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 212 SCSLCATEWHYVRVKCSHCEE 232 (305)
T ss_pred EcCCCCCcccccCccCCCCCC
Confidence 444566678778899999975
No 147
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.88 E-value=43 Score=33.30 Aligned_cols=32 Identities=16% Similarity=0.205 Sum_probs=24.9
Q ss_pred eEEeccccccchhhHHHHHhcCCCCcccccccCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 323 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V~~ 323 (425)
....+|||+|-..-|++- ...+|++|...+..
T Consensus 128 ~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~ 159 (293)
T KOG3113|consen 128 CALRCCGCVFSERALKEI--KASVCHVCGAAYQE 159 (293)
T ss_pred EEEeccceeccHHHHHHh--hhccccccCCcccc
Confidence 445579999999998874 36789999877643
No 148
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.77 E-value=26 Score=36.67 Aligned_cols=30 Identities=27% Similarity=0.617 Sum_probs=24.3
Q ss_pred cceEEeccccccchhhHHHHHhcCCCCccc
Q 014400 288 LQVRGLPCAHNFHIECIDEWLRLNVKCPRC 317 (425)
Q Consensus 288 ~~~~~LpC~HiFH~~CL~~WL~~~~tCP~C 317 (425)
-+.+.-.|||-|+..|.-.|...+..|..|
T Consensus 322 Cnhm~CrC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 322 CNHMTCRCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cceEEeeccccchhhcCcchhhCCccccCc
Confidence 346666799999999999998888877655
No 149
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=31.14 E-value=24 Score=23.62 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=14.8
Q ss_pred ccccccchhhHHHHHhcCCCCccccc
Q 014400 294 PCAHNFHIECIDEWLRLNVKCPRCRC 319 (425)
Q Consensus 294 pC~HiFH~~CL~~WL~~~~tCP~CR~ 319 (425)
-|||++...- ....||+|..
T Consensus 6 ~CGy~y~~~~------~~~~CP~Cg~ 25 (33)
T cd00350 6 VCGYIYDGEE------APWVCPVCGA 25 (33)
T ss_pred CCCCEECCCc------CCCcCcCCCC
Confidence 4999887654 4558999965
No 150
>PLN02189 cellulose synthase
Probab=30.86 E-value=39 Score=39.74 Aligned_cols=28 Identities=18% Similarity=0.438 Sum_probs=20.5
Q ss_pred cccccchhhHHHH-HhcCCCCcccccccC
Q 014400 295 CAHNFHIECIDEW-LRLNVKCPRCRCSVF 322 (425)
Q Consensus 295 C~HiFH~~CL~~W-L~~~~tCP~CR~~V~ 322 (425)
|+---|..|.+-= =+.++.||.|+....
T Consensus 59 C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 59 CGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred CCCccccchhhhhhhcCCccCcccCCchh
Confidence 7777999999422 233789999997654
No 151
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=30.37 E-value=49 Score=29.34 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=15.8
Q ss_pred EEEeeccccCCCCCCchhhhHHHHHHHHH
Q 014400 108 LWFTSARDCLPEEGQKWGFLIWLLFSYCG 136 (425)
Q Consensus 108 v~~~~~~~~l~~~~~~~~~li~~v~~~~~ 136 (425)
+||+++. |...|=|.+..+.+.++
T Consensus 24 lW~fR~E-----D~tpWNysiL~Ls~vvl 47 (125)
T PF15048_consen 24 LWFFRVE-----DATPWNYSILALSFVVL 47 (125)
T ss_pred HHheecC-----CCCCcchHHHHHHHHHH
Confidence 5788884 66678888776444333
No 152
>PF15128 T_cell_tran_alt: T-cell leukemia translocation-altered
Probab=30.36 E-value=44 Score=27.74 Aligned_cols=43 Identities=33% Similarity=0.351 Sum_probs=24.6
Q ss_pred HHHHHHHhhhcccCCCCchhhhhhccccchhHHHHHHHHhhhhhhhhheeeeEE
Q 014400 54 FRLLMFVDNGLASGMGLDLGWQQRYARFCGRVVVLSILSLLLYPFLWAWTIIGT 107 (425)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~v~~~~~l~l~pf~~~w~i~g~ 107 (425)
.-+..|++.|+|+.| |-...-+.++=+++-|.-+.++|-++|+
T Consensus 9 sf~sef~~dW~a~Dm-----------rv~ifkllL~WlvlsLl~I~lAWk~yG~ 51 (92)
T PF15128_consen 9 SFLSEFVDDWEANDM-----------RVQIFKLLLGWLVLSLLAIHLAWKVYGN 51 (92)
T ss_pred HHHHHHHHHHHhccH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 346679999999955 2222233333333334456667777665
No 153
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=29.62 E-value=52 Score=28.83 Aligned_cols=8 Identities=25% Similarity=0.393 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 014400 130 LLFSYCGL 137 (425)
Q Consensus 130 ~v~~~~~l 137 (425)
++|.++++
T Consensus 3 ~l~~iii~ 10 (130)
T PF12273_consen 3 VLFAIIIV 10 (130)
T ss_pred eeHHHHHH
Confidence 33443333
No 154
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.40 E-value=29 Score=34.38 Aligned_cols=20 Identities=25% Similarity=0.127 Sum_probs=17.5
Q ss_pred eEEeccccccchhhHHHHHh
Q 014400 290 VRGLPCAHNFHIECIDEWLR 309 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~ 309 (425)
++..|=||+|+.+||-+.+.
T Consensus 56 Pvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 56 PVITPDGYLFDREAILEYIL 75 (303)
T ss_pred CccCCCCeeeeHHHHHHHHH
Confidence 77788999999999999863
No 155
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=29.05 E-value=14 Score=26.26 Aligned_cols=29 Identities=28% Similarity=0.467 Sum_probs=19.2
Q ss_pred eEEeccccccchhhHHHHHhcCCCCccccc
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRC 319 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~ 319 (425)
.+-..|||.|....-..= .....||.|..
T Consensus 6 y~C~~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 6 YRCEECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred EEeCCCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 455569999987542111 34568999987
No 156
>PLN02195 cellulose synthase A
Probab=27.39 E-value=66 Score=37.64 Aligned_cols=29 Identities=17% Similarity=0.352 Sum_probs=21.1
Q ss_pred ccccccchhhHHHHH-hcCCCCcccccccC
Q 014400 294 PCAHNFHIECIDEWL-RLNVKCPRCRCSVF 322 (425)
Q Consensus 294 pC~HiFH~~CL~~WL-~~~~tCP~CR~~V~ 322 (425)
-|+---|+.|.+-=- +.++.||.|+....
T Consensus 30 eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 30 ECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred cCCCccccchhhhhhhcCCccCCccCCccc
Confidence 388889999994222 23779999987765
No 157
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=26.60 E-value=34 Score=27.08 Aligned_cols=12 Identities=33% Similarity=1.007 Sum_probs=8.9
Q ss_pred cchhhHHHHHhc
Q 014400 299 FHIECIDEWLRL 310 (425)
Q Consensus 299 FH~~CL~~WL~~ 310 (425)
||..||..|+..
T Consensus 12 FCRNCLskWy~~ 23 (68)
T PF06844_consen 12 FCRNCLSKWYRE 23 (68)
T ss_dssp --HHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
No 159
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=26.54 E-value=27 Score=24.08 Aligned_cols=14 Identities=36% Similarity=0.968 Sum_probs=11.1
Q ss_pred cCcccccccccCcc
Q 014400 234 ECPICLEEFHVGNE 247 (425)
Q Consensus 234 ~CaICle~~~~~~~ 247 (425)
.|+=|...|..+++
T Consensus 4 ~CP~C~~~f~v~~~ 17 (37)
T PF13719_consen 4 TCPNCQTRFRVPDD 17 (37)
T ss_pred ECCCCCceEEcCHH
Confidence 58999998887654
No 160
>PF15091 DUF4554: Domain of unknown function (DUF4554)
Probab=26.23 E-value=21 Score=37.19 Aligned_cols=15 Identities=53% Similarity=1.249 Sum_probs=13.1
Q ss_pred Hhhhccccccccccc
Q 014400 25 IVAINWKRYHLCTYP 39 (425)
Q Consensus 25 ~~~~~w~~~~~c~~~ 39 (425)
--+|+||+||+|..|
T Consensus 156 s~~idWkkyhL~~vp 170 (458)
T PF15091_consen 156 SYFIDWKKYHLCMVP 170 (458)
T ss_pred hhhccHHhhceeecc
Confidence 346899999999999
No 161
>PLN02436 cellulose synthase A
Probab=26.07 E-value=52 Score=38.82 Aligned_cols=28 Identities=25% Similarity=0.485 Sum_probs=20.2
Q ss_pred cccccchhhHHHH-HhcCCCCcccccccC
Q 014400 295 CAHNFHIECIDEW-LRLNVKCPRCRCSVF 322 (425)
Q Consensus 295 C~HiFH~~CL~~W-L~~~~tCP~CR~~V~ 322 (425)
|+---|..|.+-= =+.++.||.|+....
T Consensus 61 C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 61 CAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCCccccchhhhhhhcCCccCcccCCchh
Confidence 7777999999432 223779999997654
No 162
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=25.98 E-value=54 Score=38.72 Aligned_cols=28 Identities=29% Similarity=0.595 Sum_probs=20.1
Q ss_pred cccccchhhHH-HHHhcCCCCcccccccC
Q 014400 295 CAHNFHIECID-EWLRLNVKCPRCRCSVF 322 (425)
Q Consensus 295 C~HiFH~~CL~-~WL~~~~tCP~CR~~V~ 322 (425)
|+---|..|.+ +.=+.++.||.|+....
T Consensus 42 C~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 42 CAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCCccccchhhhhhhcCCccCCccCCchh
Confidence 67679999994 22334789999986553
No 163
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=23.55 E-value=76 Score=32.57 Aligned_cols=32 Identities=22% Similarity=0.571 Sum_probs=25.0
Q ss_pred EeccccccchhhHHHHHhc---------CCCCcccccccCC
Q 014400 292 GLPCAHNFHIECIDEWLRL---------NVKCPRCRCSVFP 323 (425)
Q Consensus 292 ~LpC~HiFH~~CL~~WL~~---------~~tCP~CR~~V~~ 323 (425)
--||||+--+.-.+-|-+. +..||.|-..+..
T Consensus 375 F~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 375 FNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 3589999999999999754 3479999776644
No 164
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=23.47 E-value=57 Score=28.16 Aligned_cols=29 Identities=17% Similarity=0.305 Sum_probs=17.8
Q ss_pred eEEeccccccchhhHHHHHhcCC--CCccccc
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNV--KCPRCRC 319 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~--tCP~CR~ 319 (425)
..-.-|+|.++..|=.. ..... .|-+|..
T Consensus 72 ~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 72 RVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp EEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 33445999999999544 11111 4888864
No 165
>PF11755 DUF3311: Protein of unknown function (DUF3311); InterPro: IPR021741 This is a family of short bacterial proteins of unknwon function.
Probab=23.10 E-value=55 Score=25.63 Aligned_cols=13 Identities=46% Similarity=0.355 Sum_probs=7.1
Q ss_pred hhhhhhhhheeee
Q 014400 93 LLLYPFLWAWTII 105 (425)
Q Consensus 93 l~l~pf~~~w~i~ 105 (425)
+.+.|++....++
T Consensus 3 ll~iP~l~~l~~~ 15 (66)
T PF11755_consen 3 LLLIPFLALLWGP 15 (66)
T ss_pred hHHHHHHHHHHhH
Confidence 4556666655543
No 166
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=22.73 E-value=1.4e+02 Score=22.99 Aligned_cols=27 Identities=30% Similarity=0.800 Sum_probs=21.4
Q ss_pred ccc--ccchhhHHHHHhcCCCCcccccccCC
Q 014400 295 CAH--NFHIECIDEWLRLNVKCPRCRCSVFP 323 (425)
Q Consensus 295 C~H--iFH~~CL~~WL~~~~tCP~CR~~V~~ 323 (425)
|.+ .|+..|.+.-| +..||.|--.+.+
T Consensus 25 CSfECTFC~~C~e~~l--~~~CPNCgGelv~ 53 (57)
T PF06906_consen 25 CSFECTFCADCAETML--NGVCPNCGGELVR 53 (57)
T ss_pred EeEeCcccHHHHHHHh--cCcCcCCCCcccc
Confidence 554 79999999865 7899999876644
No 167
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=22.72 E-value=60 Score=33.26 Aligned_cols=30 Identities=3% Similarity=-0.240 Sum_probs=23.4
Q ss_pred eEEecccc-ccchhhHHHHHhcCCCCccccccc
Q 014400 290 VRGLPCAH-NFHIECIDEWLRLNVKCPRCRCSV 321 (425)
Q Consensus 290 ~~~LpC~H-iFH~~CL~~WL~~~~tCP~CR~~V 321 (425)
....+|+| +|+.+|-. +.-..+||.|...+
T Consensus 356 t~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 356 TIWSGGNMNLSPGSLAS--ASASPTSSTCDHND 386 (394)
T ss_pred eEeecCCcccChhhhhh--cccCCccccccccc
Confidence 45567999 69999987 55677999997655
No 168
>PF13994 PgaD: PgaD-like protein
Probab=22.46 E-value=1.1e+02 Score=27.07 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=11.0
Q ss_pred HHHhhhhhh--hhheeeeEEEE
Q 014400 90 ILSLLLYPF--LWAWTIIGTLW 109 (425)
Q Consensus 90 ~~~l~l~pf--~~~w~i~g~v~ 109 (425)
..+.+++|+ ++.|.+-+...
T Consensus 27 ~~~yL~~pl~~ll~~ll~~~~~ 48 (138)
T PF13994_consen 27 GFIYLWRPLLTLLAWLLGLHLF 48 (138)
T ss_pred HHHHHHHHHHHHHHHHHccccc
Confidence 344566676 66665544443
No 169
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=22.12 E-value=72 Score=32.20 Aligned_cols=31 Identities=16% Similarity=0.138 Sum_probs=20.7
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhcchhh
Q 014400 125 GFLIWLLFSYCGLLCIACMSMGKWLTRRQAH 155 (425)
Q Consensus 125 ~~li~~v~~~~~ll~i~~i~~~~~~~~r~~~ 155 (425)
|+.-++...++.+|.+++|++..|+.|||++
T Consensus 258 F~Pcgiaalvllil~vvliiLYiWlyrrRK~ 288 (295)
T TIGR01478 258 FLPYGIAALVLIILTVVLIILYIWLYRRRKK 288 (295)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4444444445566777788889999888654
No 170
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=21.81 E-value=42 Score=25.70 Aligned_cols=14 Identities=14% Similarity=0.494 Sum_probs=9.1
Q ss_pred cccccchhhHHHHH
Q 014400 295 CAHNFHIECIDEWL 308 (425)
Q Consensus 295 C~HiFH~~CL~~WL 308 (425)
||++|+..|.....
T Consensus 31 CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 31 CGRVVCSSCSSQRI 44 (69)
T ss_dssp T--EEECCCS-EEE
T ss_pred CCCEECCchhCCEE
Confidence 99999999986554
No 171
>PTZ00370 STEVOR; Provisional
Probab=21.60 E-value=77 Score=32.04 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=20.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhcchhhh
Q 014400 125 GFLIWLLFSYCGLLCIACMSMGKWLTRRQAHS 156 (425)
Q Consensus 125 ~~li~~v~~~~~ll~i~~i~~~~~~~~r~~~~ 156 (425)
|+.-++...++.+|.++++++..|+.|||++.
T Consensus 254 F~Pygiaalvllil~vvliilYiwlyrrRK~s 285 (296)
T PTZ00370 254 FYPYGIAALVLLILAVVLIILYIWLYRRRKNS 285 (296)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 33444444455667777888889998886543
No 172
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.35 E-value=1.2e+02 Score=31.69 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=14.8
Q ss_pred HHHHHHhhhhhhhhheeeeEEEEEe
Q 014400 87 VLSILSLLLYPFLWAWTIIGTLWFT 111 (425)
Q Consensus 87 v~~~~~l~l~pf~~~w~i~g~v~~~ 111 (425)
++.++.++|||.-=.|.=.|.+++.
T Consensus 198 vl~tlaivLFPLWP~~mR~gvyY~s 222 (372)
T KOG2927|consen 198 VLVTLAIVLFPLWPRRMRQGVYYLS 222 (372)
T ss_pred HHHHHHHHhcccCcHHHhcceeeee
Confidence 5556677788865555545544443
No 173
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=20.16 E-value=60 Score=31.69 Aligned_cols=13 Identities=23% Similarity=0.902 Sum_probs=10.6
Q ss_pred CcCcccccccccC
Q 014400 233 SECPICLEEFHVG 245 (425)
Q Consensus 233 ~~CaICle~~~~~ 245 (425)
..||||.+.+...
T Consensus 3 ~~CP~C~~~l~~~ 15 (272)
T PRK11088 3 YQCPLCHQPLTLE 15 (272)
T ss_pred ccCCCCCcchhcC
Confidence 4699999999653
Done!