Query 014400
Match_columns 425
No_of_seqs 430 out of 2032
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 10:54:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014400.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014400hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.6 5.2E-16 1.8E-20 127.1 3.4 72 211-324 16-90 (91)
2 1x4j_A Ring finger protein 38; 99.5 2E-15 6.8E-20 118.7 3.9 65 218-324 7-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.5 1.7E-14 5.7E-19 106.4 4.1 49 232-322 5-54 (55)
4 2ep4_A Ring finger protein 24; 99.5 3.4E-14 1.2E-18 111.1 4.8 37 290-326 31-67 (74)
5 2kiz_A E3 ubiquitin-protein li 99.5 4.8E-14 1.6E-18 108.8 5.3 36 290-325 30-65 (69)
6 2ect_A Ring finger protein 126 99.5 4.9E-14 1.7E-18 111.3 5.3 53 231-325 14-66 (78)
7 2ecm_A Ring finger and CHY zin 99.4 1.1E-13 3.7E-18 101.9 4.5 33 290-322 22-54 (55)
8 2ecl_A Ring-box protein 2; RNF 99.4 1.5E-13 5.1E-18 110.2 4.5 34 290-323 42-76 (81)
9 1v87_A Deltex protein 2; ring- 99.4 4.6E-13 1.6E-17 113.1 5.9 35 290-324 56-95 (114)
10 2ea6_A Ring finger protein 4; 99.3 5.2E-13 1.8E-17 102.2 3.7 34 290-323 35-68 (69)
11 3ng2_A RNF4, snurf, ring finge 99.3 4.7E-13 1.6E-17 103.3 3.3 35 290-324 30-64 (71)
12 2xeu_A Ring finger protein 4; 99.3 7.6E-13 2.6E-17 99.8 3.3 35 290-324 23-57 (64)
13 3dpl_R Ring-box protein 1; ubi 99.3 1.2E-12 4.1E-17 110.7 4.7 33 289-321 67-99 (106)
14 2d8t_A Dactylidin, ring finger 99.3 1.3E-12 4.6E-17 101.5 4.1 34 290-323 28-61 (71)
15 1chc_A Equine herpes virus-1 r 99.3 1.5E-12 5E-17 99.9 4.1 34 290-323 19-52 (68)
16 2ct2_A Tripartite motif protei 99.3 7.6E-12 2.6E-16 100.3 6.8 35 290-324 32-69 (88)
17 2djb_A Polycomb group ring fin 99.2 3.1E-12 1.1E-16 99.6 4.0 36 290-325 28-64 (72)
18 4a0k_B E3 ubiquitin-protein li 99.2 7.9E-13 2.7E-17 113.7 0.3 32 290-321 79-110 (117)
19 2ysl_A Tripartite motif-contai 99.2 9.1E-12 3.1E-16 96.7 5.2 35 290-324 33-70 (73)
20 2d8s_A Cellular modulator of i 99.2 6.7E-12 2.3E-16 100.9 4.3 36 291-326 31-73 (80)
21 2csy_A Zinc finger protein 183 99.2 8.4E-12 2.9E-16 99.3 4.2 33 290-322 28-60 (81)
22 4ayc_A E3 ubiquitin-protein li 99.2 6E-12 2.1E-16 110.3 3.1 34 290-323 66-99 (138)
23 2ecy_A TNF receptor-associated 99.2 9.8E-12 3.3E-16 95.1 3.9 35 290-324 28-63 (66)
24 2ecn_A Ring finger protein 141 99.2 5.7E-12 1.9E-16 97.3 2.1 36 291-326 28-63 (70)
25 2yur_A Retinoblastoma-binding 99.2 1.2E-11 4.2E-16 97.0 3.9 35 290-324 28-65 (74)
26 1t1h_A Gspef-atpub14, armadill 99.1 2.5E-11 8.5E-16 95.6 4.6 34 290-323 21-55 (78)
27 2ecw_A Tripartite motif-contai 99.1 3.5E-11 1.2E-15 95.3 4.4 35 290-324 32-72 (85)
28 2ysj_A Tripartite motif-contai 99.1 6.1E-11 2.1E-15 89.7 4.8 28 290-317 33-63 (63)
29 2ecv_A Tripartite motif-contai 99.1 3.7E-11 1.3E-15 95.3 3.7 34 290-323 32-71 (85)
30 4ap4_A E3 ubiquitin ligase RNF 99.1 3.4E-11 1.2E-15 103.0 3.7 36 290-325 27-62 (133)
31 3lrq_A E3 ubiquitin-protein li 99.1 1.9E-11 6.5E-16 101.5 1.9 34 290-323 35-70 (100)
32 2egp_A Tripartite motif-contai 99.1 1.3E-11 4.4E-16 97.1 0.6 34 290-323 25-65 (79)
33 2ckl_A Polycomb group ring fin 99.1 7.9E-11 2.7E-15 98.7 4.6 35 290-324 28-63 (108)
34 2y43_A E3 ubiquitin-protein li 99.1 6.7E-11 2.3E-15 97.5 3.8 34 290-323 35-69 (99)
35 3ztg_A E3 ubiquitin-protein li 99.0 1.2E-10 4.1E-15 94.5 4.5 33 290-322 26-61 (92)
36 3fl2_A E3 ubiquitin-protein li 99.0 1E-10 3.5E-15 100.3 4.3 34 290-323 65-99 (124)
37 2ecj_A Tripartite motif-contai 99.0 1E-10 3.4E-15 86.6 3.5 28 290-317 28-58 (58)
38 1g25_A CDK-activating kinase a 99.0 1.4E-10 4.9E-15 88.3 4.3 35 290-324 21-56 (65)
39 4ap4_A E3 ubiquitin ligase RNF 99.0 9.3E-11 3.2E-15 100.3 2.8 35 290-324 92-126 (133)
40 1jm7_A BRCA1, breast cancer ty 99.0 1.8E-10 6.3E-15 96.4 3.3 34 290-323 34-70 (112)
41 2ckl_B Ubiquitin ligase protei 99.0 2.3E-10 7.7E-15 102.9 3.7 35 290-324 67-103 (165)
42 2ct0_A Non-SMC element 1 homol 99.0 3.3E-10 1.1E-14 89.8 4.0 30 294-323 33-64 (74)
43 3l11_A E3 ubiquitin-protein li 98.9 7.8E-11 2.7E-15 99.7 -0.0 34 290-323 28-62 (115)
44 1z6u_A NP95-like ring finger p 98.9 4.4E-10 1.5E-14 100.2 4.1 35 290-324 91-126 (150)
45 3hct_A TNF receptor-associated 98.9 3.4E-10 1.2E-14 96.5 2.3 34 290-323 31-65 (118)
46 1rmd_A RAG1; V(D)J recombinati 98.9 6.7E-10 2.3E-14 94.1 3.1 34 290-323 36-70 (116)
47 1bor_A Transcription factor PM 98.9 4.8E-10 1.7E-14 83.4 1.7 33 290-325 19-51 (56)
48 2kr4_A Ubiquitin conjugation f 98.9 1E-09 3.5E-14 88.7 3.6 34 290-323 27-60 (85)
49 2kre_A Ubiquitin conjugation f 98.9 1.3E-09 4.6E-14 90.8 4.3 34 290-323 42-75 (100)
50 2vje_A E3 ubiquitin-protein li 98.8 1.3E-09 4.5E-14 83.4 3.7 33 290-322 21-56 (64)
51 2y1n_A E3 ubiquitin-protein li 98.8 1.4E-09 4.7E-14 110.8 4.5 35 290-324 345-380 (389)
52 1e4u_A Transcriptional repress 98.8 2.2E-09 7.4E-14 85.7 4.3 33 293-325 31-64 (78)
53 1wgm_A Ubiquitin conjugation f 98.8 2.1E-09 7.3E-14 89.3 4.2 34 290-323 35-69 (98)
54 3knv_A TNF receptor-associated 98.8 1.6E-09 5.6E-14 95.6 3.4 35 290-324 44-79 (141)
55 2vje_B MDM4 protein; proto-onc 98.8 2.4E-09 8.2E-14 81.7 3.5 33 290-322 20-55 (63)
56 1jm7_B BARD1, BRCA1-associated 98.7 1.7E-09 5.8E-14 92.0 1.4 32 290-323 35-67 (117)
57 2c2l_A CHIP, carboxy terminus 98.7 9.1E-09 3.1E-13 98.4 6.4 34 290-323 221-255 (281)
58 4ic3_A E3 ubiquitin-protein li 98.7 3E-09 1E-13 83.5 1.3 30 290-323 37-67 (74)
59 3k1l_B Fancl; UBC, ring, RWD, 98.6 5.5E-09 1.9E-13 104.3 1.4 32 293-324 332-374 (381)
60 2yu4_A E3 SUMO-protein ligase 98.6 1.8E-08 6.2E-13 82.7 2.6 31 290-320 20-59 (94)
61 3hcs_A TNF receptor-associated 98.6 1.5E-08 5.2E-13 91.2 2.3 35 290-324 31-66 (170)
62 2ea5_A Cell growth regulator w 98.5 4.3E-08 1.5E-12 76.0 4.0 31 290-324 28-59 (68)
63 2f42_A STIP1 homology and U-bo 98.5 4.8E-08 1.6E-12 89.7 4.8 34 290-323 119-153 (179)
64 2ecg_A Baculoviral IAP repeat- 98.5 4.7E-08 1.6E-12 76.7 2.6 31 290-324 38-69 (75)
65 2yho_A E3 ubiquitin-protein li 98.4 6.8E-08 2.3E-12 76.9 1.3 30 290-323 31-61 (79)
66 1wim_A KIAA0161 protein; ring 98.3 1.5E-07 5E-12 76.8 2.3 31 290-320 21-61 (94)
67 2bay_A PRE-mRNA splicing facto 98.3 1.7E-07 5.8E-12 71.2 2.3 34 290-323 16-50 (61)
68 1vyx_A ORF K3, K3RING; zinc-bi 98.3 2.4E-07 8.4E-12 70.2 2.9 31 292-322 21-58 (60)
69 3t6p_A Baculoviral IAP repeat- 98.2 2.7E-07 9.4E-12 92.7 1.9 30 290-323 308-338 (345)
70 3htk_C E3 SUMO-protein ligase 98.0 1.3E-06 4.5E-11 84.4 2.6 33 290-322 194-231 (267)
71 3vk6_A E3 ubiquitin-protein li 97.8 1.1E-05 3.7E-10 67.0 3.4 34 290-323 15-49 (101)
72 3nw0_A Non-structural maintena 97.3 0.00013 4.6E-09 69.5 4.3 29 295-323 199-229 (238)
73 2ko5_A Ring finger protein Z; 89.4 0.43 1.5E-05 39.0 4.7 35 294-328 43-78 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 87.9 0.24 8.3E-06 39.9 2.4 15 293-307 22-36 (101)
75 2lri_C Autoimmune regulator; Z 87.1 0.37 1.3E-05 36.7 2.8 30 294-323 29-62 (66)
76 1wil_A KIAA1045 protein; ring 81.5 2 6.8E-05 34.4 4.8 13 295-307 35-47 (89)
77 3m62_A Ubiquitin conjugation f 78.8 1.1 3.9E-05 50.2 3.5 34 290-323 904-938 (968)
78 3o36_A Transcription intermedi 76.8 1.5 5.2E-05 39.3 3.2 30 295-324 22-55 (184)
79 1we9_A PHD finger family prote 74.5 0.87 3E-05 33.9 0.8 27 294-320 27-58 (64)
80 2k16_A Transcription initiatio 73.0 0.91 3.1E-05 34.9 0.6 29 295-323 39-71 (75)
81 3lqh_A Histone-lysine N-methyl 62.8 2.5 8.6E-05 38.4 1.4 29 295-323 27-66 (183)
82 1fp0_A KAP-1 corepressor; PHD 61.5 4.6 0.00016 32.5 2.6 26 295-320 43-72 (88)
83 3u5n_A E3 ubiquitin-protein li 59.7 2.1 7.2E-05 39.2 0.3 29 295-323 25-57 (207)
84 1mm2_A MI2-beta; PHD, zinc fin 59.1 2.7 9.4E-05 31.1 0.8 27 295-321 27-57 (61)
85 2l5u_A Chromodomain-helicase-D 58.3 3.9 0.00013 30.2 1.5 27 294-320 28-58 (61)
86 2puy_A PHD finger protein 21A; 58.3 1.2 4E-05 32.9 -1.4 29 294-322 22-54 (60)
87 2ysm_A Myeloid/lymphoid or mix 57.0 3.1 0.00011 34.2 0.9 25 294-318 27-55 (111)
88 2yql_A PHD finger protein 21A; 56.9 1.9 6.6E-05 31.3 -0.4 26 294-319 26-55 (56)
89 1f62_A Transcription factor WS 55.7 4.4 0.00015 28.5 1.4 27 294-320 20-50 (51)
90 1zbd_B Rabphilin-3A; G protein 52.9 7.9 0.00027 33.3 2.8 15 229-243 52-66 (134)
91 1xwh_A Autoimmune regulator; P 51.4 2.5 8.4E-05 31.8 -0.6 27 294-320 25-55 (66)
92 3v43_A Histone acetyltransfera 51.2 5 0.00017 33.2 1.2 26 295-320 83-112 (112)
93 4gne_A Histone-lysine N-methyl 50.0 10 0.00034 31.5 2.9 27 295-323 35-65 (107)
94 3i2d_A E3 SUMO-protein ligase 49.9 7.6 0.00026 39.0 2.5 34 290-323 263-300 (371)
95 1weo_A Cellulose synthase, cat 47.8 24 0.00082 28.4 4.6 30 294-323 40-70 (93)
96 4fo9_A E3 SUMO-protein ligase 47.0 9 0.00031 38.4 2.5 34 290-323 229-266 (360)
97 2yt5_A Metal-response element- 45.9 5.7 0.0002 29.4 0.7 28 295-322 29-63 (66)
98 2xb1_A Pygopus homolog 2, B-ce 45.6 4.1 0.00014 33.5 -0.2 28 294-321 25-62 (105)
99 1wep_A PHF8; structural genomi 41.2 18 0.00063 27.8 3.0 27 295-321 33-64 (79)
100 2ri7_A Nucleosome-remodeling f 41.2 6 0.0002 34.9 0.2 27 294-320 28-59 (174)
101 3v43_A Histone acetyltransfera 40.8 27 0.00092 28.6 4.2 26 293-318 30-62 (112)
102 2lbm_A Transcriptional regulat 40.1 22 0.00074 30.9 3.6 27 294-320 80-117 (142)
103 2ro1_A Transcription intermedi 38.1 14 0.00049 33.2 2.2 28 294-321 19-50 (189)
104 2e6r_A Jumonji/ARID domain-con 37.9 5.7 0.0002 31.9 -0.4 26 295-320 37-66 (92)
105 1weu_A Inhibitor of growth fam 37.3 20 0.00069 28.8 2.7 26 295-322 57-87 (91)
106 2e6s_A E3 ubiquitin-protein li 36.7 6.6 0.00022 30.6 -0.3 25 295-319 47-76 (77)
107 3asl_A E3 ubiquitin-protein li 35.6 7 0.00024 29.7 -0.2 26 295-320 39-69 (70)
108 3ask_A E3 ubiquitin-protein li 35.1 9.3 0.00032 35.9 0.4 26 295-320 195-225 (226)
109 1wen_A Inhibitor of growth fam 33.2 25 0.00087 26.7 2.6 25 295-321 37-66 (71)
110 1iml_A CRIP, cysteine rich int 33.0 16 0.00054 27.3 1.4 21 295-323 19-39 (76)
111 2ks1_B Epidermal growth factor 32.9 44 0.0015 23.3 3.5 23 115-137 2-24 (44)
112 1wem_A Death associated transc 32.9 17 0.00057 27.7 1.5 29 294-322 35-72 (76)
113 3ql9_A Transcriptional regulat 32.0 34 0.0012 29.2 3.4 26 295-320 75-111 (129)
114 2lv9_A Histone-lysine N-methyl 31.3 14 0.00049 29.7 0.9 26 295-320 48-76 (98)
115 2cu8_A Cysteine-rich protein 2 31.2 22 0.00076 26.4 2.0 22 294-323 27-48 (76)
116 2ku3_A Bromodomain-containing 31.1 16 0.00055 27.9 1.1 26 295-320 39-66 (71)
117 1wev_A Riken cDNA 1110020M19; 31.1 9.4 0.00032 30.3 -0.2 28 295-322 39-74 (88)
118 2kwj_A Zinc finger protein DPF 30.8 14 0.00049 30.5 0.8 26 293-318 27-59 (114)
119 2fiy_A Protein FDHE homolog; F 30.0 16 0.00056 35.7 1.2 22 299-320 210-231 (309)
120 2l43_A N-teminal domain from h 29.4 21 0.00073 28.2 1.6 28 295-322 48-77 (88)
121 2gmg_A Hypothetical protein PF 29.4 8.8 0.0003 31.8 -0.7 27 289-320 67-93 (105)
122 3mjh_B Early endosome antigen 28.7 11 0.00036 25.0 -0.2 13 232-244 5-17 (34)
123 2dj7_A Actin-binding LIM prote 27.8 28 0.00095 26.5 2.0 20 295-322 34-53 (80)
124 3shb_A E3 ubiquitin-protein li 27.0 10 0.00034 29.5 -0.7 25 295-319 47-76 (77)
125 2vpb_A Hpygo1, pygopus homolog 26.7 37 0.0013 25.3 2.5 15 232-246 8-22 (65)
126 2kgg_A Histone demethylase jar 26.7 22 0.00075 25.1 1.1 25 294-318 24-52 (52)
127 1z2q_A LM5-1; membrane protein 26.6 39 0.0013 26.3 2.7 14 294-307 42-55 (84)
128 3o70_A PHD finger protein 13; 26.4 15 0.0005 27.8 0.1 26 295-320 39-67 (68)
129 1joc_A EEA1, early endosomal a 26.3 31 0.001 29.1 2.1 14 294-307 90-103 (125)
130 2yw8_A RUN and FYVE domain-con 26.1 39 0.0013 26.1 2.6 14 294-307 40-53 (82)
131 1y02_A CARP2, FYVE-ring finger 25.8 8.7 0.0003 32.5 -1.4 30 294-323 40-69 (120)
132 1wew_A DNA-binding family prot 25.1 23 0.00077 27.2 1.0 29 294-322 37-74 (78)
133 3kv5_D JMJC domain-containing 24.9 26 0.00089 36.4 1.7 29 295-323 58-91 (488)
134 1dvp_A HRS, hepatocyte growth 24.8 32 0.0011 31.4 2.2 14 294-307 182-195 (220)
135 2dar_A PDZ and LIM domain prot 24.7 48 0.0016 25.5 2.9 23 293-323 41-63 (90)
136 3zyq_A Hepatocyte growth facto 24.2 34 0.0012 31.5 2.3 14 294-307 185-198 (226)
137 3t7l_A Zinc finger FYVE domain 24.2 37 0.0013 26.8 2.1 28 294-321 41-74 (90)
138 2klu_A T-cell surface glycopro 23.9 73 0.0025 24.2 3.6 6 132-137 15-20 (70)
139 1x4u_A Zinc finger, FYVE domai 23.9 44 0.0015 25.9 2.5 13 232-244 14-26 (84)
140 2cs3_A Protein C14ORF4, MY039 23.9 56 0.0019 25.9 3.0 16 295-310 37-52 (93)
141 1x4k_A Skeletal muscle LIM-pro 23.1 52 0.0018 23.8 2.7 21 295-323 25-45 (72)
142 1wfk_A Zinc finger, FYVE domai 22.8 47 0.0016 26.1 2.5 28 294-321 30-64 (88)
143 2co8_A NEDD9 interacting prote 22.8 69 0.0023 24.2 3.4 22 294-323 33-54 (82)
144 1x62_A C-terminal LIM domain p 22.7 38 0.0013 25.4 1.9 21 294-322 32-52 (79)
145 1vfy_A Phosphatidylinositol-3- 22.3 52 0.0018 24.8 2.6 13 294-306 32-44 (73)
146 3kqi_A GRC5, PHD finger protei 22.1 24 0.00082 26.8 0.6 27 295-321 31-62 (75)
147 1wee_A PHD finger family prote 22.0 17 0.00056 27.5 -0.3 28 295-322 37-68 (72)
148 3c6w_A P28ING5, inhibitor of g 21.3 17 0.00057 26.6 -0.4 23 295-319 30-57 (59)
149 2o35_A Hypothetical protein DU 21.2 33 0.0011 28.2 1.2 12 299-310 43-54 (105)
150 3fyb_A Protein of unknown func 21.0 33 0.0011 28.1 1.2 12 299-310 42-53 (104)
151 1wyh_A SLIM 2, skeletal muscle 20.9 48 0.0016 24.0 2.1 22 294-323 24-45 (72)
152 2d8x_A Protein pinch; LIM doma 20.7 53 0.0018 23.7 2.3 22 294-323 22-43 (70)
153 1x64_A Alpha-actinin-2 associa 20.3 56 0.0019 25.0 2.5 22 294-323 42-63 (89)
154 3mpx_A FYVE, rhogef and PH dom 20.3 22 0.00074 35.4 0.0 28 294-321 396-430 (434)
155 2vnf_A ING 4, P29ING4, inhibit 20.1 18 0.00061 26.5 -0.5 21 297-319 34-58 (60)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.58 E-value=5.2e-16 Score=127.06 Aligned_cols=72 Identities=35% Similarity=0.752 Sum_probs=59.7
Q ss_pred HHHHHHHHhCCccccccCC---CCCCcCcccccccccCccccccccccCCCCCCCCchhhHHHHHhhhhhcccchhhhhc
Q 014400 211 EAVEALIQELPKFRLKAVP---TDCSECPICLEEFHVGNEWQADVKFYPYGFTSHKPLCKLVHALMFLKEHMSTSLFLEV 287 (425)
Q Consensus 211 ea~~~~i~~Lp~~~~~~~~---~~~~~CaICle~~~~~~~~~~~~~~~p~~~~s~~~~~r~~~~~~~~~~~~~~~~~~~~ 287 (425)
.++++.++.||...+.+.. .+...|+||+++|..++.
T Consensus 16 ~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~---------------------------------------- 55 (91)
T 2l0b_A 16 PASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDV---------------------------------------- 55 (91)
T ss_dssp CCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCE----------------------------------------
T ss_pred CCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCc----------------------------------------
Confidence 3455667899988776543 344579999999987665
Q ss_pred cceEEeccccccchhhHHHHHhcCCCCcccccccCCC
Q 014400 288 LQVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 324 (425)
Q Consensus 288 ~~~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V~~~ 324 (425)
++.+||||.||..||..|++.+.+||+||..+.+.
T Consensus 56 --~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 90 (91)
T 2l0b_A 56 --ATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPPP 90 (91)
T ss_dssp --EEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSCC
T ss_pred --EEecCCCChHHHHHHHHHHHcCCcCcCcCccCCCC
Confidence 88899999999999999999999999999998764
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=2e-15 Score=118.71 Aligned_cols=65 Identities=35% Similarity=0.909 Sum_probs=54.2
Q ss_pred HhCCccccccCC--CCCCcCcccccccccCccccccccccCCCCCCCCchhhHHHHHhhhhhcccchhhhhccceEEecc
Q 014400 218 QELPKFRLKAVP--TDCSECPICLEEFHVGNEWQADVKFYPYGFTSHKPLCKLVHALMFLKEHMSTSLFLEVLQVRGLPC 295 (425)
Q Consensus 218 ~~Lp~~~~~~~~--~~~~~CaICle~~~~~~~~~~~~~~~p~~~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~LpC 295 (425)
+.||..+++..+ .+..+|+||++++..++. ++.+||
T Consensus 7 ~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~------------------------------------------~~~l~C 44 (75)
T 1x4j_A 7 GQLPSYRFNPNNHQSEQTLCVVCMCDFESRQL------------------------------------------LRVLPC 44 (75)
T ss_dssp SSCCCEEBCSSSCSSSCCEETTTTEECCBTCE------------------------------------------EEEETT
T ss_pred hhCCcEEecCccccCCCCCCeECCcccCCCCe------------------------------------------EEEECC
Confidence 567777665432 345679999999987655 889999
Q ss_pred ccccchhhHHHHHhcCCCCcccccccCCC
Q 014400 296 AHNFHIECIDEWLRLNVKCPRCRCSVFPN 324 (425)
Q Consensus 296 ~HiFH~~CL~~WL~~~~tCP~CR~~V~~~ 324 (425)
||+||..||..|++.+.+||+||..+.+.
T Consensus 45 ~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 45 NHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp TEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 99999999999999999999999998764
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.48 E-value=1.7e-14 Score=106.36 Aligned_cols=49 Identities=49% Similarity=1.087 Sum_probs=43.8
Q ss_pred CCcCcccccccccCccccccccccCCCCCCCCchhhHHHHHhhhhhcccchhhhhccceEEec-cccccchhhHHHHHhc
Q 014400 232 CSECPICLEEFHVGNEWQADVKFYPYGFTSHKPLCKLVHALMFLKEHMSTSLFLEVLQVRGLP-CAHNFHIECIDEWLRL 310 (425)
Q Consensus 232 ~~~CaICle~~~~~~~~~~~~~~~p~~~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Lp-C~HiFH~~CL~~WL~~ 310 (425)
..+|+||++++..++. +..++ |||.||..||++|++.
T Consensus 5 ~~~C~IC~~~~~~~~~------------------------------------------~~~~~~C~H~f~~~Ci~~w~~~ 42 (55)
T 1iym_A 5 GVECAVCLAELEDGEE------------------------------------------ARFLPRCGHGFHAECVDMWLGS 42 (55)
T ss_dssp SCCCTTTCCCCCTTSC------------------------------------------CEECSSSCCEECTTHHHHTTTT
T ss_pred CCcCccCCccccCCCc------------------------------------------eEECCCCCCcccHHHHHHHHHc
Confidence 4689999999987665 77887 9999999999999999
Q ss_pred CCCCcccccccC
Q 014400 311 NVKCPRCRCSVF 322 (425)
Q Consensus 311 ~~tCP~CR~~V~ 322 (425)
+.+||+||..+.
T Consensus 43 ~~~CP~Cr~~~~ 54 (55)
T 1iym_A 43 HSTCPLCRLTVV 54 (55)
T ss_dssp CCSCSSSCCCSC
T ss_pred CCcCcCCCCEeE
Confidence 999999998874
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=3.4e-14 Score=111.09 Aligned_cols=37 Identities=32% Similarity=0.811 Sum_probs=33.4
Q ss_pred eEEeccccccchhhHHHHHhcCCCCcccccccCCCCc
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNLD 326 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V~~~~~ 326 (425)
++.+||+|+||..||..|++.+.+||+||..+.....
T Consensus 31 ~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 31 LGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp EEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred EEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccccc
Confidence 7788999999999999999999999999999876443
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=4.8e-14 Score=108.78 Aligned_cols=36 Identities=53% Similarity=1.111 Sum_probs=33.2
Q ss_pred eEEeccccccchhhHHHHHhcCCCCcccccccCCCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNL 325 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V~~~~ 325 (425)
++.+||||+||..||..|++.+.+||+||..+....
T Consensus 30 ~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 30 VRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp EEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred EEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 888999999999999999999999999999987643
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.45 E-value=4.9e-14 Score=111.27 Aligned_cols=53 Identities=43% Similarity=0.942 Sum_probs=46.4
Q ss_pred CCCcCcccccccccCccccccccccCCCCCCCCchhhHHHHHhhhhhcccchhhhhccceEEeccccccchhhHHHHHhc
Q 014400 231 DCSECPICLEEFHVGNEWQADVKFYPYGFTSHKPLCKLVHALMFLKEHMSTSLFLEVLQVRGLPCAHNFHIECIDEWLRL 310 (425)
Q Consensus 231 ~~~~CaICle~~~~~~~~~~~~~~~p~~~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~LpC~HiFH~~CL~~WL~~ 310 (425)
+..+|+||++.|..++. ++.++|||+||..||..|++.
T Consensus 14 ~~~~C~IC~~~~~~~~~------------------------------------------~~~~~C~H~fc~~Ci~~~~~~ 51 (78)
T 2ect_A 14 SGLECPVCKEDYALGES------------------------------------------VRQLPCNHLFHDSCIVPWLEQ 51 (78)
T ss_dssp SSCCCTTTTSCCCTTSC------------------------------------------EEECTTSCEEETTTTHHHHTT
T ss_pred CCCCCeeCCccccCCCC------------------------------------------EEEeCCCCeecHHHHHHHHHc
Confidence 34689999999987555 788999999999999999999
Q ss_pred CCCCcccccccCCCC
Q 014400 311 NVKCPRCRCSVFPNL 325 (425)
Q Consensus 311 ~~tCP~CR~~V~~~~ 325 (425)
+.+||+||..+....
T Consensus 52 ~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 52 HDSCPVCRKSLTGQN 66 (78)
T ss_dssp TCSCTTTCCCCCCSC
T ss_pred CCcCcCcCCccCCcc
Confidence 999999999987643
No 7
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.41 E-value=1.1e-13 Score=101.88 Aligned_cols=33 Identities=33% Similarity=0.750 Sum_probs=31.0
Q ss_pred eEEeccccccchhhHHHHHhcCCCCcccccccC
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 322 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V~ 322 (425)
++.++|||+||..||.+|++.+.+||+||..+.
T Consensus 22 ~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 22 AHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp EEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred eEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 788999999999999999999999999998874
No 8
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.5e-13 Score=110.18 Aligned_cols=34 Identities=32% Similarity=0.764 Sum_probs=30.1
Q ss_pred eEEec-cccccchhhHHHHHhcCCCCcccccccCC
Q 014400 290 VRGLP-CAHNFHIECIDEWLRLNVKCPRCRCSVFP 323 (425)
Q Consensus 290 ~~~Lp-C~HiFH~~CL~~WL~~~~tCP~CR~~V~~ 323 (425)
++.++ |||+||..||++||+.+.+||+||.++..
T Consensus 42 ~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 42 VVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred EEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 55565 99999999999999999999999998753
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.37 E-value=4.6e-13 Score=113.13 Aligned_cols=35 Identities=26% Similarity=0.572 Sum_probs=30.1
Q ss_pred eEEeccccccchhhHHHHH-----hcCCCCcccccccCCC
Q 014400 290 VRGLPCAHNFHIECIDEWL-----RLNVKCPRCRCSVFPN 324 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL-----~~~~tCP~CR~~V~~~ 324 (425)
++.++|+|+||..||..|+ +.+.+||+||..+...
T Consensus 56 ~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 56 GRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp EEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred eecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 5678999999999999999 4577999999887543
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=5.2e-13 Score=102.22 Aligned_cols=34 Identities=26% Similarity=0.658 Sum_probs=31.4
Q ss_pred eEEeccccccchhhHHHHHhcCCCCcccccccCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 323 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V~~ 323 (425)
++.++|||+||..||..|++.+.+||+||..+..
T Consensus 35 ~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 35 IVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp EEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred eEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 5789999999999999999999999999998754
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.33 E-value=4.7e-13 Score=103.32 Aligned_cols=35 Identities=26% Similarity=0.647 Sum_probs=32.2
Q ss_pred eEEeccccccchhhHHHHHhcCCCCcccccccCCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 324 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V~~~ 324 (425)
++.++|||.||..||.+|++.+.+||+||..+..+
T Consensus 30 ~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 30 IVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred eEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 67899999999999999999999999999998654
No 12
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.30 E-value=7.6e-13 Score=99.84 Aligned_cols=35 Identities=26% Similarity=0.647 Sum_probs=32.2
Q ss_pred eEEeccccccchhhHHHHHhcCCCCcccccccCCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 324 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V~~~ 324 (425)
+..++|||.||..||.+|++.+.+||+||..+..+
T Consensus 23 ~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 23 IVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp EEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred EEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 67899999999999999999999999999998654
No 13
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.30 E-value=1.2e-12 Score=110.66 Aligned_cols=33 Identities=33% Similarity=0.671 Sum_probs=30.6
Q ss_pred ceEEeccccccchhhHHHHHhcCCCCccccccc
Q 014400 289 QVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 321 (425)
Q Consensus 289 ~~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V 321 (425)
.++.++|+|.||..||++||+.+.+||+||.+.
T Consensus 67 ~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 67 TVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp CEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred eEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 378889999999999999999999999999985
No 14
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.3e-12 Score=101.46 Aligned_cols=34 Identities=29% Similarity=0.590 Sum_probs=31.4
Q ss_pred eEEeccccccchhhHHHHHhcCCCCcccccccCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 323 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V~~ 323 (425)
++.++|||+||..||..|++.+.+||+||..+..
T Consensus 28 ~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 28 PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 6778999999999999999999999999998854
No 15
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.29 E-value=1.5e-12 Score=99.93 Aligned_cols=34 Identities=41% Similarity=0.960 Sum_probs=31.3
Q ss_pred eEEeccccccchhhHHHHHhcCCCCcccccccCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 323 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V~~ 323 (425)
++.+||||.||..||..|++.+.+||+||..+..
T Consensus 19 ~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 19 SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred cEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 5788999999999999999999999999998853
No 16
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=7.6e-12 Score=100.31 Aligned_cols=35 Identities=26% Similarity=0.572 Sum_probs=31.3
Q ss_pred eEEeccccccchhhHHHHHhcC---CCCcccccccCCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRLN---VKCPRCRCSVFPN 324 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~---~tCP~CR~~V~~~ 324 (425)
++.++|||.||..||..|++.+ .+||+||..+...
T Consensus 32 ~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 32 PKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp EEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred eEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 6788999999999999999986 7999999988654
No 17
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=3.1e-12 Score=99.64 Aligned_cols=36 Identities=25% Similarity=0.639 Sum_probs=31.3
Q ss_pred eEEe-ccccccchhhHHHHHhcCCCCcccccccCCCC
Q 014400 290 VRGL-PCAHNFHIECIDEWLRLNVKCPRCRCSVFPNL 325 (425)
Q Consensus 290 ~~~L-pC~HiFH~~CL~~WL~~~~tCP~CR~~V~~~~ 325 (425)
++.+ +|||.||..||..|++.+.+||+||..+....
T Consensus 28 p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 28 ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 4445 99999999999999999999999999986643
No 18
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.24 E-value=7.9e-13 Score=113.75 Aligned_cols=32 Identities=34% Similarity=0.692 Sum_probs=0.0
Q ss_pred eEEeccccccchhhHHHHHhcCCCCccccccc
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSV 321 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V 321 (425)
+..++|+|.||..||++||+.+.+||+||.+.
T Consensus 79 v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 79 VAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp --------------------------------
T ss_pred cccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 56678999999999999999999999999985
No 19
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=9.1e-12 Score=96.67 Aligned_cols=35 Identities=37% Similarity=0.687 Sum_probs=30.4
Q ss_pred eEEeccccccchhhHHHHHh---cCCCCcccccccCCC
Q 014400 290 VRGLPCAHNFHIECIDEWLR---LNVKCPRCRCSVFPN 324 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~---~~~tCP~CR~~V~~~ 324 (425)
++.++|||.||..||..|++ .+.+||+||..+..+
T Consensus 33 ~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 33 PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 67789999999999999997 456999999988653
No 20
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=6.7e-12 Score=100.87 Aligned_cols=36 Identities=22% Similarity=0.644 Sum_probs=30.5
Q ss_pred EEeccc-----cccchhhHHHHHhcC--CCCcccccccCCCCc
Q 014400 291 RGLPCA-----HNFHIECIDEWLRLN--VKCPRCRCSVFPNLD 326 (425)
Q Consensus 291 ~~LpC~-----HiFH~~CL~~WL~~~--~tCP~CR~~V~~~~~ 326 (425)
..+||+ |.||..||+.||+.+ .+||+||..+.....
T Consensus 31 l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~ 73 (80)
T 2d8s_A 31 LITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETK 73 (80)
T ss_dssp EECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCC
T ss_pred eEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcc
Confidence 358997 999999999999886 499999999876543
No 21
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=8.4e-12 Score=99.27 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=30.8
Q ss_pred eEEeccccccchhhHHHHHhcCCCCcccccccC
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVF 322 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V~ 322 (425)
++.++|||+||..||..|++.+.+||+||..+.
T Consensus 28 p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 28 PVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 667999999999999999999999999999985
No 22
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.18 E-value=6e-12 Score=110.35 Aligned_cols=34 Identities=38% Similarity=0.948 Sum_probs=31.7
Q ss_pred eEEeccccccchhhHHHHHhcCCCCcccccccCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 323 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V~~ 323 (425)
++.+||||.||..||..|++.+.+||+||..+..
T Consensus 66 ~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 66 AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 7789999999999999999999999999998854
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=9.8e-12 Score=95.09 Aligned_cols=35 Identities=26% Similarity=0.616 Sum_probs=29.8
Q ss_pred eEEeccccccchhhHHHHHh-cCCCCcccccccCCC
Q 014400 290 VRGLPCAHNFHIECIDEWLR-LNVKCPRCRCSVFPN 324 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~-~~~tCP~CR~~V~~~ 324 (425)
+..++|||.||..||..|++ .+.+||+||..+..+
T Consensus 28 p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 28 PKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred eeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 44589999999999999995 567999999998654
No 24
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=5.7e-12 Score=97.30 Aligned_cols=36 Identities=39% Similarity=0.838 Sum_probs=31.9
Q ss_pred EEeccccccchhhHHHHHhcCCCCcccccccCCCCc
Q 014400 291 RGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNLD 326 (425)
Q Consensus 291 ~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V~~~~~ 326 (425)
+.+||||.||..||..|++.+.+||+||..+.....
T Consensus 28 ~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 28 LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANE 63 (70)
T ss_dssp EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence 358999999999999999999999999999876543
No 25
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.17 E-value=1.2e-11 Score=96.97 Aligned_cols=35 Identities=26% Similarity=0.559 Sum_probs=30.2
Q ss_pred eEEec-cccccchhhHHHHHhcC--CCCcccccccCCC
Q 014400 290 VRGLP-CAHNFHIECIDEWLRLN--VKCPRCRCSVFPN 324 (425)
Q Consensus 290 ~~~Lp-C~HiFH~~CL~~WL~~~--~tCP~CR~~V~~~ 324 (425)
++.++ |||.||..||..|++.+ .+||+||..+...
T Consensus 28 p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 28 AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 66799 99999999999999876 6999999976543
No 26
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.14 E-value=2.5e-11 Score=95.59 Aligned_cols=34 Identities=15% Similarity=0.452 Sum_probs=30.9
Q ss_pred eEEeccccccchhhHHHHHhc-CCCCcccccccCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRL-NVKCPRCRCSVFP 323 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~-~~tCP~CR~~V~~ 323 (425)
++.++|||.||..||..|++. +.+||+||..+..
T Consensus 21 Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 21 PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 777899999999999999997 7899999998864
No 27
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.11 E-value=3.5e-11 Score=95.33 Aligned_cols=35 Identities=26% Similarity=0.451 Sum_probs=30.9
Q ss_pred eEEeccccccchhhHHHHHhc------CCCCcccccccCCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRL------NVKCPRCRCSVFPN 324 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~------~~tCP~CR~~V~~~ 324 (425)
++.++|||.||..||..|++. +..||+||..+..+
T Consensus 32 p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 32 PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 567899999999999999988 67999999988653
No 28
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=6.1e-11 Score=89.68 Aligned_cols=28 Identities=36% Similarity=0.765 Sum_probs=25.1
Q ss_pred eEEeccccccchhhHHHHHh---cCCCCccc
Q 014400 290 VRGLPCAHNFHIECIDEWLR---LNVKCPRC 317 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~---~~~tCP~C 317 (425)
++.++|||+||..||..|++ .+.+||+|
T Consensus 33 p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 33 PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 66789999999999999998 45689998
No 29
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=3.7e-11 Score=95.25 Aligned_cols=34 Identities=32% Similarity=0.687 Sum_probs=30.4
Q ss_pred eEEeccccccchhhHHHHHhc------CCCCcccccccCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRL------NVKCPRCRCSVFP 323 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~------~~tCP~CR~~V~~ 323 (425)
++.++|||.||..||..|++. +.+||+||..+..
T Consensus 32 p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 32 PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 556899999999999999987 7899999998865
No 30
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.10 E-value=3.4e-11 Score=103.01 Aligned_cols=36 Identities=25% Similarity=0.609 Sum_probs=32.8
Q ss_pred eEEeccccccchhhHHHHHhcCCCCcccccccCCCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNL 325 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V~~~~ 325 (425)
++.++|||.||..||.+|++.+.+||+||..+....
T Consensus 27 ~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 27 IVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp EEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred eEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 588999999999999999999999999999986543
No 31
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.09 E-value=1.9e-11 Score=101.47 Aligned_cols=34 Identities=29% Similarity=0.717 Sum_probs=30.5
Q ss_pred eEE-eccccccchhhHHHHHhcC-CCCcccccccCC
Q 014400 290 VRG-LPCAHNFHIECIDEWLRLN-VKCPRCRCSVFP 323 (425)
Q Consensus 290 ~~~-LpC~HiFH~~CL~~WL~~~-~tCP~CR~~V~~ 323 (425)
++. ++|||.||..||..|++.+ .+||+||..+..
T Consensus 35 p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 35 ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 566 8999999999999999987 699999999854
No 32
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.09 E-value=1.3e-11 Score=97.12 Aligned_cols=34 Identities=26% Similarity=0.442 Sum_probs=30.1
Q ss_pred eEEeccccccchhhHHHHHhc-------CCCCcccccccCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRL-------NVKCPRCRCSVFP 323 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~-------~~tCP~CR~~V~~ 323 (425)
++.++|||.||..||..|++. +.+||+||..+..
T Consensus 25 p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 25 PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 555899999999999999987 6689999999865
No 33
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.07 E-value=7.9e-11 Score=98.70 Aligned_cols=35 Identities=29% Similarity=0.671 Sum_probs=31.5
Q ss_pred eEEe-ccccccchhhHHHHHhcCCCCcccccccCCC
Q 014400 290 VRGL-PCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 324 (425)
Q Consensus 290 ~~~L-pC~HiFH~~CL~~WL~~~~tCP~CR~~V~~~ 324 (425)
++.+ +|||.||..||..|++.+.+||+||..+...
T Consensus 28 p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 28 ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred cCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 5566 9999999999999999999999999998764
No 34
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.06 E-value=6.7e-11 Score=97.52 Aligned_cols=34 Identities=29% Similarity=0.731 Sum_probs=30.5
Q ss_pred eEEe-ccccccchhhHHHHHhcCCCCcccccccCC
Q 014400 290 VRGL-PCAHNFHIECIDEWLRLNVKCPRCRCSVFP 323 (425)
Q Consensus 290 ~~~L-pC~HiFH~~CL~~WL~~~~tCP~CR~~V~~ 323 (425)
++.+ +|||.||..||..|++.+.+||+||..+..
T Consensus 35 p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 35 AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 5556 899999999999999999999999998864
No 35
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.04 E-value=1.2e-10 Score=94.49 Aligned_cols=33 Identities=27% Similarity=0.597 Sum_probs=29.1
Q ss_pred eEEec-cccccchhhHHHHHhcC--CCCcccccccC
Q 014400 290 VRGLP-CAHNFHIECIDEWLRLN--VKCPRCRCSVF 322 (425)
Q Consensus 290 ~~~Lp-C~HiFH~~CL~~WL~~~--~tCP~CR~~V~ 322 (425)
++.+| |||.||..||..|+..+ .+||+||..+.
T Consensus 26 p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 26 AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 67799 99999999999999754 59999999874
No 36
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.04 E-value=1e-10 Score=100.32 Aligned_cols=34 Identities=32% Similarity=0.670 Sum_probs=30.4
Q ss_pred eEEeccccccchhhHHHHHhcCC-CCcccccccCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNV-KCPRCRCSVFP 323 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~-tCP~CR~~V~~ 323 (425)
++.+||||.||..||..|++.+. +||+||..+..
T Consensus 65 p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 65 PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 77789999999999999998654 99999999865
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1e-10 Score=86.60 Aligned_cols=28 Identities=36% Similarity=0.920 Sum_probs=24.0
Q ss_pred eEEeccccccchhhHHHHH---hcCCCCccc
Q 014400 290 VRGLPCAHNFHIECIDEWL---RLNVKCPRC 317 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL---~~~~tCP~C 317 (425)
++.++|||+||..||..|+ +.+.+||+|
T Consensus 28 p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 28 PVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4558999999999999995 456799998
No 38
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.03 E-value=1.4e-10 Score=88.27 Aligned_cols=35 Identities=20% Similarity=0.461 Sum_probs=29.5
Q ss_pred eEEeccccccchhhHHHHHhc-CCCCcccccccCCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRL-NVKCPRCRCSVFPN 324 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~-~~tCP~CR~~V~~~ 324 (425)
.+.++|||.||..||.+|+.. +.+||+||..+..+
T Consensus 21 ~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 21 LMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp EEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred eecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 356899999999999999765 46899999998654
No 39
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.01 E-value=9.3e-11 Score=100.27 Aligned_cols=35 Identities=26% Similarity=0.647 Sum_probs=32.2
Q ss_pred eEEeccccccchhhHHHHHhcCCCCcccccccCCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 324 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V~~~ 324 (425)
.+.++|||.||..||++|++.+.+||+||.++..+
T Consensus 92 ~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 92 IVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp EEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred eEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 57889999999999999999999999999998654
No 40
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.98 E-value=1.8e-10 Score=96.35 Aligned_cols=34 Identities=24% Similarity=0.517 Sum_probs=29.6
Q ss_pred eEEeccccccchhhHHHHHhcCC---CCcccccccCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNV---KCPRCRCSVFP 323 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~---tCP~CR~~V~~ 323 (425)
++.++|||.||..||..|++.+. +||+||..+..
T Consensus 34 p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 34 PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 55589999999999999998754 89999998865
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.97 E-value=2.3e-10 Score=102.91 Aligned_cols=35 Identities=34% Similarity=0.695 Sum_probs=30.3
Q ss_pred eEEe-ccccccchhhHHHHHhc-CCCCcccccccCCC
Q 014400 290 VRGL-PCAHNFHIECIDEWLRL-NVKCPRCRCSVFPN 324 (425)
Q Consensus 290 ~~~L-pC~HiFH~~CL~~WL~~-~~tCP~CR~~V~~~ 324 (425)
++.+ +|||.||..||..|++. +.+||+||..+...
T Consensus 67 p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 103 (165)
T 2ckl_B 67 TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 103 (165)
T ss_dssp EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSG
T ss_pred cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCc
Confidence 4555 99999999999999997 78999999998643
No 42
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.96 E-value=3.3e-10 Score=89.80 Aligned_cols=30 Identities=23% Similarity=0.719 Sum_probs=27.4
Q ss_pred ccccccchhhHHHHHhcC--CCCcccccccCC
Q 014400 294 PCAHNFHIECIDEWLRLN--VKCPRCRCSVFP 323 (425)
Q Consensus 294 pC~HiFH~~CL~~WL~~~--~tCP~CR~~V~~ 323 (425)
.|+|.||..||..||+.+ .+||+||.+...
T Consensus 33 ~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 33 TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 699999999999999987 899999988754
No 43
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.95 E-value=7.8e-11 Score=99.71 Aligned_cols=34 Identities=29% Similarity=0.621 Sum_probs=30.3
Q ss_pred eEEeccccccchhhHHHHHhc-CCCCcccccccCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRL-NVKCPRCRCSVFP 323 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~-~~tCP~CR~~V~~ 323 (425)
++.++|||.||..||..|++. +.+||+||..+..
T Consensus 28 p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 28 PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 677899999999999999987 6799999998853
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.93 E-value=4.4e-10 Score=100.21 Aligned_cols=35 Identities=29% Similarity=0.627 Sum_probs=31.3
Q ss_pred eEEeccccccchhhHHHHHhcCC-CCcccccccCCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNV-KCPRCRCSVFPN 324 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~-tCP~CR~~V~~~ 324 (425)
++.+||||.||..||..|++.+. +||+||..+...
T Consensus 91 pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 91 PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 66799999999999999999765 899999998765
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.90 E-value=3.4e-10 Score=96.48 Aligned_cols=34 Identities=29% Similarity=0.498 Sum_probs=30.5
Q ss_pred eEEeccccccchhhHHHHHhcCC-CCcccccccCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNV-KCPRCRCSVFP 323 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~-tCP~CR~~V~~ 323 (425)
++.++|||.||..||..|++.+. +||+||..+..
T Consensus 31 p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 31 AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 66789999999999999998865 99999998865
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.87 E-value=6.7e-10 Score=94.06 Aligned_cols=34 Identities=35% Similarity=0.740 Sum_probs=30.6
Q ss_pred eEEeccccccchhhHHHHHhc-CCCCcccccccCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRL-NVKCPRCRCSVFP 323 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~-~~tCP~CR~~V~~ 323 (425)
++.++|||.||..||..|++. +.+||+||..+..
T Consensus 36 p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 36 PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 666899999999999999997 7799999998864
No 47
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.87 E-value=4.8e-10 Score=83.40 Aligned_cols=33 Identities=24% Similarity=0.619 Sum_probs=27.8
Q ss_pred eEEeccccccchhhHHHHHhcCCCCcccccccCCCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNL 325 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V~~~~ 325 (425)
++.|||||.||..||..| +.+||+||..+..+.
T Consensus 19 p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 19 PKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp CSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred eEEcCCCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 667999999999999884 678999999986543
No 48
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.86 E-value=1e-09 Score=88.70 Aligned_cols=34 Identities=18% Similarity=0.008 Sum_probs=31.4
Q ss_pred eEEeccccccchhhHHHHHhcCCCCcccccccCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 323 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V~~ 323 (425)
++.++|||.|+..||..|++.+.+||.||+.+..
T Consensus 27 PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 27 PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 8889999999999999999999999999988753
No 49
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.86 E-value=1.3e-09 Score=90.83 Aligned_cols=34 Identities=18% Similarity=0.031 Sum_probs=31.7
Q ss_pred eEEeccccccchhhHHHHHhcCCCCcccccccCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 323 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~V~~ 323 (425)
++.+||||.|+..||..|+..+.+||.||+.+..
T Consensus 42 PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 42 PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 8889999999999999999999999999998764
No 50
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.85 E-value=1.3e-09 Score=83.42 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=29.2
Q ss_pred eEEe--ccccc-cchhhHHHHHhcCCCCcccccccC
Q 014400 290 VRGL--PCAHN-FHIECIDEWLRLNVKCPRCRCSVF 322 (425)
Q Consensus 290 ~~~L--pC~Hi-FH~~CL~~WL~~~~tCP~CR~~V~ 322 (425)
+..+ ||||. |+..|+..|.+.+..||+||+++.
T Consensus 21 ~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 21 GCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp EEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred EEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 4445 99999 899999999999999999999884
No 51
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.84 E-value=1.4e-09 Score=110.79 Aligned_cols=35 Identities=31% Similarity=0.822 Sum_probs=31.7
Q ss_pred eEEeccccccchhhHHHHHh-cCCCCcccccccCCC
Q 014400 290 VRGLPCAHNFHIECIDEWLR-LNVKCPRCRCSVFPN 324 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~-~~~tCP~CR~~V~~~ 324 (425)
++.+||||.||..||..|++ .+.+||+||..+...
T Consensus 345 pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 345 VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 77899999999999999999 688999999988653
No 52
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.82 E-value=2.2e-09 Score=85.68 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=27.5
Q ss_pred eccccccchhhHHHHHhc-CCCCcccccccCCCC
Q 014400 293 LPCAHNFHIECIDEWLRL-NVKCPRCRCSVFPNL 325 (425)
Q Consensus 293 LpC~HiFH~~CL~~WL~~-~~tCP~CR~~V~~~~ 325 (425)
++|||.||..||..+++. +..||.||+.+....
T Consensus 31 ~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 31 CTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp STTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred cCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 459999999999998754 678999999987643
No 53
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.82 E-value=2.1e-09 Score=89.25 Aligned_cols=34 Identities=18% Similarity=0.077 Sum_probs=31.6
Q ss_pred eEEeccc-cccchhhHHHHHhcCCCCcccccccCC
Q 014400 290 VRGLPCA-HNFHIECIDEWLRLNVKCPRCRCSVFP 323 (425)
Q Consensus 290 ~~~LpC~-HiFH~~CL~~WL~~~~tCP~CR~~V~~ 323 (425)
++.++|| |.|+..||..|++.+.+||.||+.+..
T Consensus 35 PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 35 PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 7889999 999999999999999999999998864
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.81 E-value=1.6e-09 Score=95.63 Aligned_cols=35 Identities=17% Similarity=0.359 Sum_probs=30.5
Q ss_pred eEEeccccccchhhHHHHHhcCC-CCcccccccCCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRLNV-KCPRCRCSVFPN 324 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~~-tCP~CR~~V~~~ 324 (425)
++.++|||.||..||..|++.+. +||+||.++..+
T Consensus 44 pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 44 PFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYE 79 (141)
T ss_dssp EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred cEECCCCCccCHHHHHHHHhcCCCCCCCCCCccccc
Confidence 66789999999999999998765 999999987543
No 55
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.79 E-value=2.4e-09 Score=81.71 Aligned_cols=33 Identities=15% Similarity=0.347 Sum_probs=29.1
Q ss_pred eEEe--ccccc-cchhhHHHHHhcCCCCcccccccC
Q 014400 290 VRGL--PCAHN-FHIECIDEWLRLNVKCPRCRCSVF 322 (425)
Q Consensus 290 ~~~L--pC~Hi-FH~~CL~~WL~~~~tCP~CR~~V~ 322 (425)
...+ ||||. |+..|+..|.+.+.+||+||+++.
T Consensus 20 ~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 20 GNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp EEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred eEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 4445 99998 999999999998899999999884
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.74 E-value=1.7e-09 Score=91.96 Aligned_cols=32 Identities=25% Similarity=0.640 Sum_probs=28.2
Q ss_pred eEEe-ccccccchhhHHHHHhcCCCCcccccccCC
Q 014400 290 VRGL-PCAHNFHIECIDEWLRLNVKCPRCRCSVFP 323 (425)
Q Consensus 290 ~~~L-pC~HiFH~~CL~~WL~~~~tCP~CR~~V~~ 323 (425)
++.+ +|||.||..||..|++ ..||+||..+..
T Consensus 35 pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 35 PVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp CBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred ccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 5567 8999999999999998 889999998843
No 57
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.74 E-value=9.1e-09 Score=98.40 Aligned_cols=34 Identities=18% Similarity=0.110 Sum_probs=29.9
Q ss_pred eEEeccccccchhhHHHHHhcC-CCCcccccccCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRLN-VKCPRCRCSVFP 323 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~-~tCP~CR~~V~~ 323 (425)
++.+||||+|+..||..|+..+ .+||.||.++..
T Consensus 221 Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 221 PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 7889999999999999999874 459999998853
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.70 E-value=3e-09 Score=83.51 Aligned_cols=30 Identities=27% Similarity=0.558 Sum_probs=27.2
Q ss_pred eEEeccccc-cchhhHHHHHhcCCCCcccccccCC
Q 014400 290 VRGLPCAHN-FHIECIDEWLRLNVKCPRCRCSVFP 323 (425)
Q Consensus 290 ~~~LpC~Hi-FH~~CL~~WL~~~~tCP~CR~~V~~ 323 (425)
+..+||||. |+..|+..| .+||+||..+..
T Consensus 37 ~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 37 IVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp EEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred EEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 778999999 999999998 899999998754
No 59
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.63 E-value=5.5e-09 Score=104.27 Aligned_cols=32 Identities=25% Similarity=0.784 Sum_probs=27.0
Q ss_pred eccccccchhhHHHHHhcC-----------CCCcccccccCCC
Q 014400 293 LPCAHNFHIECIDEWLRLN-----------VKCPRCRCSVFPN 324 (425)
Q Consensus 293 LpC~HiFH~~CL~~WL~~~-----------~tCP~CR~~V~~~ 324 (425)
.+|||.||..||.+||+.. .+||+||.++...
T Consensus 332 ~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 332 AKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp TTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred CccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 4699999999999999862 4699999988643
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.57 E-value=1.8e-08 Score=82.67 Aligned_cols=31 Identities=19% Similarity=0.517 Sum_probs=27.1
Q ss_pred eEEec-cccccchhhHHHHHhcC------CCCcc--cccc
Q 014400 290 VRGLP-CAHNFHIECIDEWLRLN------VKCPR--CRCS 320 (425)
Q Consensus 290 ~~~Lp-C~HiFH~~CL~~WL~~~------~tCP~--CR~~ 320 (425)
++.++ |||+|+..||..|++.+ .+||+ |+..
T Consensus 20 PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 20 PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 77886 99999999999999864 49999 9865
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.57 E-value=1.5e-08 Score=91.25 Aligned_cols=35 Identities=31% Similarity=0.532 Sum_probs=30.5
Q ss_pred eEEeccccccchhhHHHHHhcC-CCCcccccccCCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRLN-VKCPRCRCSVFPN 324 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~-~tCP~CR~~V~~~ 324 (425)
++.++|||+|+..||..|++.+ .+||+||..+..+
T Consensus 31 pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 31 AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 6678999999999999999874 4999999988653
No 62
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=4.3e-08 Score=75.98 Aligned_cols=31 Identities=32% Similarity=0.592 Sum_probs=26.9
Q ss_pred eEEeccccc-cchhhHHHHHhcCCCCcccccccCCC
Q 014400 290 VRGLPCAHN-FHIECIDEWLRLNVKCPRCRCSVFPN 324 (425)
Q Consensus 290 ~~~LpC~Hi-FH~~CL~~WL~~~~tCP~CR~~V~~~ 324 (425)
+..+||||. |+..|+.. ..+||+||..+...
T Consensus 28 ~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 28 WVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp CEETTTTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred EEEECCCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 778999999 99999983 57999999988653
No 63
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.54 E-value=4.8e-08 Score=89.72 Aligned_cols=34 Identities=18% Similarity=0.096 Sum_probs=29.8
Q ss_pred eEEeccccccchhhHHHHHhcC-CCCcccccccCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRLN-VKCPRCRCSVFP 323 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~~-~tCP~CR~~V~~ 323 (425)
++.+||||+|+..||..|+..+ .+||.||..+..
T Consensus 119 PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 119 PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 7788999999999999999874 479999988754
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=4.7e-08 Score=76.66 Aligned_cols=31 Identities=26% Similarity=0.553 Sum_probs=26.1
Q ss_pred eEEeccccc-cchhhHHHHHhcCCCCcccccccCCC
Q 014400 290 VRGLPCAHN-FHIECIDEWLRLNVKCPRCRCSVFPN 324 (425)
Q Consensus 290 ~~~LpC~Hi-FH~~CL~~WL~~~~tCP~CR~~V~~~ 324 (425)
+..+||||. |+..|+.. ...||+||..+...
T Consensus 38 ~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 38 IVFVPCGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp BCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred EEEecCCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 667899999 99999964 47999999988653
No 65
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.38 E-value=6.8e-08 Score=76.94 Aligned_cols=30 Identities=30% Similarity=0.614 Sum_probs=26.6
Q ss_pred eEEeccccc-cchhhHHHHHhcCCCCcccccccCC
Q 014400 290 VRGLPCAHN-FHIECIDEWLRLNVKCPRCRCSVFP 323 (425)
Q Consensus 290 ~~~LpC~Hi-FH~~CL~~WL~~~~tCP~CR~~V~~ 323 (425)
+..+||||. |+..|+..| ..||+||..+..
T Consensus 31 ~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 31 STFCPCGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp EEEETTCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred EEEECCCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 788999999 999999877 399999998855
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.34 E-value=1.5e-07 Score=76.83 Aligned_cols=31 Identities=23% Similarity=0.644 Sum_probs=25.1
Q ss_pred eEEeccccccchhhHHHHHhc--------CCCCcc--cccc
Q 014400 290 VRGLPCAHNFHIECIDEWLRL--------NVKCPR--CRCS 320 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~--------~~tCP~--CR~~ 320 (425)
+...+|||.|+..||..+++. ..+||. ||..
T Consensus 21 ~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 21 TTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp EEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred eEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 333479999999999999864 238999 9988
No 67
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.33 E-value=1.7e-07 Score=71.21 Aligned_cols=34 Identities=6% Similarity=-0.047 Sum_probs=30.6
Q ss_pred eEEe-ccccccchhhHHHHHhcCCCCcccccccCC
Q 014400 290 VRGL-PCAHNFHIECIDEWLRLNVKCPRCRCSVFP 323 (425)
Q Consensus 290 ~~~L-pC~HiFH~~CL~~WL~~~~tCP~CR~~V~~ 323 (425)
++.+ +|||+|...||++|++.+.+||++++++..
T Consensus 16 PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 16 PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 6677 899999999999999998999999988753
No 68
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.31 E-value=2.4e-07 Score=70.16 Aligned_cols=31 Identities=29% Similarity=0.692 Sum_probs=25.6
Q ss_pred Eeccc--c---ccchhhHHHHHhc--CCCCcccccccC
Q 014400 292 GLPCA--H---NFHIECIDEWLRL--NVKCPRCRCSVF 322 (425)
Q Consensus 292 ~LpC~--H---iFH~~CL~~WL~~--~~tCP~CR~~V~ 322 (425)
.+||. | .||..||..|+.. +.+||+||....
T Consensus 21 ~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 21 FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 47854 4 8999999999975 679999998764
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.22 E-value=2.7e-07 Score=92.74 Aligned_cols=30 Identities=37% Similarity=0.668 Sum_probs=27.0
Q ss_pred eEEeccccc-cchhhHHHHHhcCCCCcccccccCC
Q 014400 290 VRGLPCAHN-FHIECIDEWLRLNVKCPRCRCSVFP 323 (425)
Q Consensus 290 ~~~LpC~Hi-FH~~CL~~WL~~~~tCP~CR~~V~~ 323 (425)
+..+||||. ||..|+..| ..||+||..+..
T Consensus 308 ~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 308 VVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp EEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred eEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 778999999 999999988 789999998853
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.05 E-value=1.3e-06 Score=84.41 Aligned_cols=33 Identities=27% Similarity=0.472 Sum_probs=27.7
Q ss_pred eEE-eccccccchhhHHHHHhcC--CCCcc--cccccC
Q 014400 290 VRG-LPCAHNFHIECIDEWLRLN--VKCPR--CRCSVF 322 (425)
Q Consensus 290 ~~~-LpC~HiFH~~CL~~WL~~~--~tCP~--CR~~V~ 322 (425)
++. +.|||+|+..||..|++.+ .+||+ ||+.+.
T Consensus 194 PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 194 PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 554 4899999999999999874 47999 998764
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.79 E-value=1.1e-05 Score=66.96 Aligned_cols=34 Identities=29% Similarity=0.565 Sum_probs=30.4
Q ss_pred eEEeccccccchhhHHHHHhc-CCCCcccccccCC
Q 014400 290 VRGLPCAHNFHIECIDEWLRL-NVKCPRCRCSVFP 323 (425)
Q Consensus 290 ~~~LpC~HiFH~~CL~~WL~~-~~tCP~CR~~V~~ 323 (425)
.+..||+|+|+..|+..|.+. ..+||.||++|..
T Consensus 15 gRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 15 GRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp EEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred eeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 788999999999999999865 6799999999854
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.32 E-value=0.00013 Score=69.54 Aligned_cols=29 Identities=24% Similarity=0.764 Sum_probs=25.4
Q ss_pred cccccchhhHHHHHhcCC--CCcccccccCC
Q 014400 295 CAHNFHIECIDEWLRLNV--KCPRCRCSVFP 323 (425)
Q Consensus 295 C~HiFH~~CL~~WL~~~~--tCP~CR~~V~~ 323 (425)
|+|.||..|+..|++.+. +||.|+..-..
T Consensus 199 C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 199 CGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp SCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred cChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 999999999999998755 99999987543
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=89.38 E-value=0.43 Score=39.00 Aligned_cols=35 Identities=26% Similarity=0.671 Sum_probs=31.4
Q ss_pred cc-ccccchhhHHHHHhcCCCCcccccccCCCCchh
Q 014400 294 PC-AHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLS 328 (425)
Q Consensus 294 pC-~HiFH~~CL~~WL~~~~tCP~CR~~V~~~~~~~ 328 (425)
.| .|.++..||..-|.....||+|...++.+...+
T Consensus 43 ~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~~ 78 (99)
T 2ko5_A 43 ECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRPS 78 (99)
T ss_dssp ECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCTT
T ss_pred eecchhhHHHHHHHHHhhccCCcccCCcCCcceecC
Confidence 45 599999999999999999999999999887765
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=87.93 E-value=0.24 Score=39.90 Aligned_cols=15 Identities=20% Similarity=0.605 Sum_probs=13.8
Q ss_pred eccccccchhhHHHH
Q 014400 293 LPCAHNFHIECIDEW 307 (425)
Q Consensus 293 LpC~HiFH~~CL~~W 307 (425)
+.|+|.|+..|+..+
T Consensus 22 ~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 22 VTCEVSYCDECLKAT 36 (101)
T ss_dssp TTTTEEECHHHHHHH
T ss_pred CcCChHHhHHHCHHH
Confidence 889999999999983
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=87.12 E-value=0.37 Score=36.70 Aligned_cols=30 Identities=30% Similarity=0.568 Sum_probs=23.3
Q ss_pred ccccccchhhHHHHHhcC----CCCcccccccCC
Q 014400 294 PCAHNFHIECIDEWLRLN----VKCPRCRCSVFP 323 (425)
Q Consensus 294 pC~HiFH~~CL~~WL~~~----~tCP~CR~~V~~ 323 (425)
.|...||..|++..|... =.||.|+....+
T Consensus 29 ~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p 62 (66)
T 2lri_C 29 HCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTP 62 (66)
T ss_dssp SSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCC
T ss_pred CCCCceecccCCCccCcCCCCCEECccccCCCcc
Confidence 388999999999888663 279999765433
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=81.49 E-value=2 Score=34.44 Aligned_cols=13 Identities=31% Similarity=0.828 Sum_probs=12.1
Q ss_pred cccccchhhHHHH
Q 014400 295 CAHNFHIECIDEW 307 (425)
Q Consensus 295 C~HiFH~~CL~~W 307 (425)
|+-+||..||++-
T Consensus 35 C~RvfH~~CL~r~ 47 (89)
T 1wil_A 35 CTRVFHDGCLRRM 47 (89)
T ss_dssp SSSCCCHHHHHHH
T ss_pred ccccccHhhcccc
Confidence 8899999999986
No 77
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=78.80 E-value=1.1 Score=50.22 Aligned_cols=34 Identities=21% Similarity=0.106 Sum_probs=30.4
Q ss_pred eEEeccc-cccchhhHHHHHhcCCCCcccccccCC
Q 014400 290 VRGLPCA-HNFHIECIDEWLRLNVKCPRCRCSVFP 323 (425)
Q Consensus 290 ~~~LpC~-HiFH~~CL~~WL~~~~tCP~CR~~V~~ 323 (425)
++.+|.| |.|-..+|..|+..+.+||.=|+++..
T Consensus 904 PVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 904 PVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 8889998 589999999999999999999887753
No 78
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=76.78 E-value=1.5 Score=39.34 Aligned_cols=30 Identities=30% Similarity=0.502 Sum_probs=22.6
Q ss_pred cccccchhhHHHHHhcC----CCCcccccccCCC
Q 014400 295 CAHNFHIECIDEWLRLN----VKCPRCRCSVFPN 324 (425)
Q Consensus 295 C~HiFH~~CL~~WL~~~----~tCP~CR~~V~~~ 324 (425)
|...||..|+..-+... -.||.|+..-.+.
T Consensus 22 C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~~~ 55 (184)
T 3o36_A 22 CPKVFHLSCHVPTLTNFPSGEWICTFCRDLSKPE 55 (184)
T ss_dssp SSCEECTTTSSSCCSSCCSSCCCCTTTSCSSSCS
T ss_pred CCcccCccccCCCCCCCCCCCEECccccCccccc
Confidence 88899999998766542 3699998765443
No 79
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=74.52 E-value=0.87 Score=33.86 Aligned_cols=27 Identities=30% Similarity=0.608 Sum_probs=19.3
Q ss_pred ccccccchhhHHHHHh-----cCCCCcccccc
Q 014400 294 PCAHNFHIECIDEWLR-----LNVKCPRCRCS 320 (425)
Q Consensus 294 pC~HiFH~~CL~~WL~-----~~~tCP~CR~~ 320 (425)
.|..-||..|+.---. ..-.||.|+.+
T Consensus 27 ~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 27 LCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 4888899999864322 24589999764
No 80
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=73.02 E-value=0.91 Score=34.86 Aligned_cols=29 Identities=21% Similarity=0.560 Sum_probs=21.3
Q ss_pred cccccchhhHHHHHhc----CCCCcccccccCC
Q 014400 295 CAHNFHIECIDEWLRL----NVKCPRCRCSVFP 323 (425)
Q Consensus 295 C~HiFH~~CL~~WL~~----~~tCP~CR~~V~~ 323 (425)
|.--||..|+..-... .-.||.|+.++..
T Consensus 39 C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 39 CDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp SSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 8889999999754432 3479999876643
No 81
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=62.82 E-value=2.5 Score=38.40 Aligned_cols=29 Identities=21% Similarity=0.426 Sum_probs=20.7
Q ss_pred cccccchhhHHH------HHh-----cCCCCcccccccCC
Q 014400 295 CAHNFHIECIDE------WLR-----LNVKCPRCRCSVFP 323 (425)
Q Consensus 295 C~HiFH~~CL~~------WL~-----~~~tCP~CR~~V~~ 323 (425)
|..-||..|+.- =+. ....||.|+..-.+
T Consensus 27 C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 27 CDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp TCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred CCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 889999999842 111 15699999876544
No 82
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=61.48 E-value=4.6 Score=32.47 Aligned_cols=26 Identities=27% Similarity=0.627 Sum_probs=19.5
Q ss_pred cccccchhhHHHHHhc----CCCCcccccc
Q 014400 295 CAHNFHIECIDEWLRL----NVKCPRCRCS 320 (425)
Q Consensus 295 C~HiFH~~CL~~WL~~----~~tCP~CR~~ 320 (425)
|.-.||..|+..=|.. .-.||.|+..
T Consensus 43 C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 43 CEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 7778999999775544 2269999754
No 83
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=59.68 E-value=2.1 Score=39.20 Aligned_cols=29 Identities=31% Similarity=0.470 Sum_probs=21.9
Q ss_pred cccccchhhHHHHHhcC----CCCcccccccCC
Q 014400 295 CAHNFHIECIDEWLRLN----VKCPRCRCSVFP 323 (425)
Q Consensus 295 C~HiFH~~CL~~WL~~~----~tCP~CR~~V~~ 323 (425)
|...||..|+..-+... -.||.|+..-.+
T Consensus 25 C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~~ 57 (207)
T 3u5n_A 25 CPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKP 57 (207)
T ss_dssp SSCEECTTTSSSCCSSCCSSCCCCTTTSCSSSC
T ss_pred CCCccCCccCCCCCCCCCCCCEEeCceeCcccc
Confidence 88899999998766542 379999865433
No 84
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=59.06 E-value=2.7 Score=31.07 Aligned_cols=27 Identities=37% Similarity=1.019 Sum_probs=20.1
Q ss_pred cccccchhhHHHHHhc----CCCCccccccc
Q 014400 295 CAHNFHIECIDEWLRL----NVKCPRCRCSV 321 (425)
Q Consensus 295 C~HiFH~~CL~~WL~~----~~tCP~CR~~V 321 (425)
|...||..|+..=|.. .-.||.|+.+.
T Consensus 27 C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 27 CPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 8889999999865443 22699997654
No 85
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=58.31 E-value=3.9 Score=30.21 Aligned_cols=27 Identities=26% Similarity=0.810 Sum_probs=20.1
Q ss_pred ccccccchhhHHHHHhc----CCCCcccccc
Q 014400 294 PCAHNFHIECIDEWLRL----NVKCPRCRCS 320 (425)
Q Consensus 294 pC~HiFH~~CL~~WL~~----~~tCP~CR~~ 320 (425)
.|...||..|+..=+.. .-.||.|+..
T Consensus 28 ~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 28 TCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 37789999999875543 2379999754
No 86
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=58.26 E-value=1.2 Score=32.85 Aligned_cols=29 Identities=31% Similarity=0.886 Sum_probs=21.0
Q ss_pred ccccccchhhHHHHHhc----CCCCcccccccC
Q 014400 294 PCAHNFHIECIDEWLRL----NVKCPRCRCSVF 322 (425)
Q Consensus 294 pC~HiFH~~CL~~WL~~----~~tCP~CR~~V~ 322 (425)
.|...||..|+..=+.. .-.||.|+....
T Consensus 22 ~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 22 TCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp SSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 38889999999865443 226999976553
No 87
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=57.01 E-value=3.1 Score=34.18 Aligned_cols=25 Identities=28% Similarity=0.854 Sum_probs=18.7
Q ss_pred ccccccchhhHHHHHhc----CCCCcccc
Q 014400 294 PCAHNFHIECIDEWLRL----NVKCPRCR 318 (425)
Q Consensus 294 pC~HiFH~~CL~~WL~~----~~tCP~CR 318 (425)
.|+..||..||...+.. .-.||.|+
T Consensus 27 ~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 27 TCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp SSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcChHHhCCccccccccCccCCcCC
Confidence 48899999999887642 23677774
No 88
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.86 E-value=1.9 Score=31.26 Aligned_cols=26 Identities=35% Similarity=0.931 Sum_probs=18.9
Q ss_pred ccccccchhhHHHHHhcC----CCCccccc
Q 014400 294 PCAHNFHIECIDEWLRLN----VKCPRCRC 319 (425)
Q Consensus 294 pC~HiFH~~CL~~WL~~~----~tCP~CR~ 319 (425)
.|...||..|+..=|... -.||.|+.
T Consensus 26 ~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 26 TCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 488899999998655432 25998864
No 89
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=55.70 E-value=4.4 Score=28.54 Aligned_cols=27 Identities=30% Similarity=0.759 Sum_probs=19.0
Q ss_pred ccccccchhhHHHHHhc----CCCCcccccc
Q 014400 294 PCAHNFHIECIDEWLRL----NVKCPRCRCS 320 (425)
Q Consensus 294 pC~HiFH~~CL~~WL~~----~~tCP~CR~~ 320 (425)
.|...||..|+..=+.. .-.||.|+..
T Consensus 20 ~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 20 ECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp TTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 38889999999754433 2269999753
No 90
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=52.89 E-value=7.9 Score=33.34 Aligned_cols=15 Identities=20% Similarity=0.545 Sum_probs=11.9
Q ss_pred CCCCCcCcccccccc
Q 014400 229 PTDCSECPICLEEFH 243 (425)
Q Consensus 229 ~~~~~~CaICle~~~ 243 (425)
..+...|++|...|.
T Consensus 52 ~~~~~~C~~C~~~~g 66 (134)
T 1zbd_B 52 GDGVNRCILCGEQLG 66 (134)
T ss_dssp SCSSSBCSSSCCBCS
T ss_pred cCCCccccccCCCcc
Confidence 345678999999994
No 91
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=51.39 E-value=2.5 Score=31.78 Aligned_cols=27 Identities=30% Similarity=0.763 Sum_probs=19.6
Q ss_pred ccccccchhhHHHHHhc----CCCCcccccc
Q 014400 294 PCAHNFHIECIDEWLRL----NVKCPRCRCS 320 (425)
Q Consensus 294 pC~HiFH~~CL~~WL~~----~~tCP~CR~~ 320 (425)
-|...||..|+..=|.. .-.||.|+..
T Consensus 25 ~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 25 GCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 38889999999865443 2269999753
No 92
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=51.15 E-value=5 Score=33.16 Aligned_cols=26 Identities=38% Similarity=0.736 Sum_probs=19.8
Q ss_pred cccccchhhHHHHHhc----CCCCcccccc
Q 014400 295 CAHNFHIECIDEWLRL----NVKCPRCRCS 320 (425)
Q Consensus 295 C~HiFH~~CL~~WL~~----~~tCP~CR~~ 320 (425)
|...||..|++.=|.. .-.||.||.+
T Consensus 83 C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~k 112 (112)
T 3v43_A 83 CDRGFHMECCDPPLTRMPKGMWICQICRPR 112 (112)
T ss_dssp TCCEECGGGCSSCCSSCCSSCCCCTTTSCC
T ss_pred CCCeeecccCCCCCCCCCCCCeECCCCCCc
Confidence 8899999999765544 2379999853
No 93
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=50.01 E-value=10 Score=31.45 Aligned_cols=27 Identities=26% Similarity=0.827 Sum_probs=19.6
Q ss_pred cccccchhhHHHHHhcC----CCCcccccccCC
Q 014400 295 CAHNFHIECIDEWLRLN----VKCPRCRCSVFP 323 (425)
Q Consensus 295 C~HiFH~~CL~~WL~~~----~tCP~CR~~V~~ 323 (425)
|...||..|+. |... -.||.|+..+-.
T Consensus 35 Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~ 65 (107)
T 4gne_A 35 CPKAYHLLCLN--LTQPPYGKWECPWHQCDECS 65 (107)
T ss_dssp CCCEECTGGGT--CSSCCSSCCCCGGGBCTTTC
T ss_pred CCcccccccCc--CCcCCCCCEECCCCCCCcCC
Confidence 66899999997 5442 269988766644
No 94
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=49.89 E-value=7.6 Score=39.04 Aligned_cols=34 Identities=18% Similarity=0.364 Sum_probs=21.7
Q ss_pred eEEeccccc--cchhhHHHHHhc--CCCCcccccccCC
Q 014400 290 VRGLPCAHN--FHIECIDEWLRL--NVKCPRCRCSVFP 323 (425)
Q Consensus 290 ~~~LpC~Hi--FH~~CL~~WL~~--~~tCP~CR~~V~~ 323 (425)
++...|.|+ |...=+....+. .-.||+|...+..
T Consensus 263 vRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 263 SKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp EEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred CcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCH
Confidence 777789998 554333333222 3489999887754
No 95
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=47.79 E-value=24 Score=28.45 Aligned_cols=30 Identities=17% Similarity=0.367 Sum_probs=22.7
Q ss_pred ccccccchhhHHHHH-hcCCCCcccccccCC
Q 014400 294 PCAHNFHIECIDEWL-RLNVKCPRCRCSVFP 323 (425)
Q Consensus 294 pC~HiFH~~CL~~WL-~~~~tCP~CR~~V~~ 323 (425)
-|+--.+..|.+-=. +.++.||.|+.....
T Consensus 40 eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 40 ECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred ccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 377788999996543 448899999887753
No 96
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=46.98 E-value=9 Score=38.36 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=22.3
Q ss_pred eEEeccccc--cchhhHHHHHhc--CCCCcccccccCC
Q 014400 290 VRGLPCAHN--FHIECIDEWLRL--NVKCPRCRCSVFP 323 (425)
Q Consensus 290 ~~~LpC~Hi--FH~~CL~~WL~~--~~tCP~CR~~V~~ 323 (425)
++...|.|+ |...=+-...+. .-.||+|...+..
T Consensus 229 ~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 229 CRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp EEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred CcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCH
Confidence 777789998 654433333332 3489999988754
No 97
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=45.92 E-value=5.7 Score=29.40 Aligned_cols=28 Identities=18% Similarity=0.519 Sum_probs=20.0
Q ss_pred cccccchhhHHHHHh-------cCCCCcccccccC
Q 014400 295 CAHNFHIECIDEWLR-------LNVKCPRCRCSVF 322 (425)
Q Consensus 295 C~HiFH~~CL~~WL~-------~~~tCP~CR~~V~ 322 (425)
|.-.||..|+..=+. ..-.||.|+....
T Consensus 29 C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 29 CGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp SCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 888999999886432 2337999976543
No 98
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=45.63 E-value=4.1 Score=33.53 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=19.0
Q ss_pred ccccccchhhHHHHH---h-------cCCCCccccccc
Q 014400 294 PCAHNFHIECIDEWL---R-------LNVKCPRCRCSV 321 (425)
Q Consensus 294 pC~HiFH~~CL~~WL---~-------~~~tCP~CR~~V 321 (425)
.|..-||..|+.-=- + .+-.||.|+.+-
T Consensus 25 ~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 25 SCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp TTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 377889999984211 0 244799998764
No 99
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=41.24 E-value=18 Score=27.75 Aligned_cols=27 Identities=26% Similarity=0.558 Sum_probs=19.2
Q ss_pred cccccchhhHHHHHh-----cCCCCccccccc
Q 014400 295 CAHNFHIECIDEWLR-----LNVKCPRCRCSV 321 (425)
Q Consensus 295 C~HiFH~~CL~~WL~-----~~~tCP~CR~~V 321 (425)
|..-||..|+.-=-. ..-.||.|+.+-
T Consensus 33 C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 33 CQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp TCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 888899999842211 245899998754
No 100
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=41.18 E-value=6 Score=34.87 Aligned_cols=27 Identities=22% Similarity=0.637 Sum_probs=19.0
Q ss_pred ccccccchhhHHHHH-----hcCCCCcccccc
Q 014400 294 PCAHNFHIECIDEWL-----RLNVKCPRCRCS 320 (425)
Q Consensus 294 pC~HiFH~~CL~~WL-----~~~~tCP~CR~~ 320 (425)
.|..-||..|+.--- ...-.||.|+..
T Consensus 28 ~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 28 RCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp TTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 388899999995221 124589999864
No 101
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=40.79 E-value=27 Score=28.61 Aligned_cols=26 Identities=23% Similarity=0.634 Sum_probs=17.8
Q ss_pred eccccccchhhHHHH------Hh-cCCCCcccc
Q 014400 293 LPCAHNFHIECIDEW------LR-LNVKCPRCR 318 (425)
Q Consensus 293 LpC~HiFH~~CL~~W------L~-~~~tCP~CR 318 (425)
-.|+..||..||... +. ..-.||.|+
T Consensus 30 ~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 30 ADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp TTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred hhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 349999999999632 22 234688885
No 102
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=40.07 E-value=22 Score=30.94 Aligned_cols=27 Identities=26% Similarity=0.397 Sum_probs=19.9
Q ss_pred ccccccchhhHHHHHh-----------cCCCCcccccc
Q 014400 294 PCAHNFHIECIDEWLR-----------LNVKCPRCRCS 320 (425)
Q Consensus 294 pC~HiFH~~CL~~WL~-----------~~~tCP~CR~~ 320 (425)
.|-..||..||..=+. ..=.||.|+.+
T Consensus 80 ~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 80 FCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp SSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 3788999999996553 12379999743
No 103
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=38.05 E-value=14 Score=33.24 Aligned_cols=28 Identities=25% Similarity=0.559 Sum_probs=20.4
Q ss_pred ccccccchhhHHHHHhc----CCCCccccccc
Q 014400 294 PCAHNFHIECIDEWLRL----NVKCPRCRCSV 321 (425)
Q Consensus 294 pC~HiFH~~CL~~WL~~----~~tCP~CR~~V 321 (425)
.|...||..|+..=+.. .-.||.|+..-
T Consensus 19 ~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 19 QCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp TTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 48889999999764433 22699998663
No 104
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.94 E-value=5.7 Score=31.85 Aligned_cols=26 Identities=35% Similarity=0.763 Sum_probs=18.8
Q ss_pred cccccchhhHHHHHhc----CCCCcccccc
Q 014400 295 CAHNFHIECIDEWLRL----NVKCPRCRCS 320 (425)
Q Consensus 295 C~HiFH~~CL~~WL~~----~~tCP~CR~~ 320 (425)
|...||..|+..=|.. .=.||.|+..
T Consensus 37 C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 37 CDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp TCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 8889999999743332 2269999754
No 105
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=37.30 E-value=20 Score=28.77 Aligned_cols=26 Identities=35% Similarity=0.797 Sum_probs=18.3
Q ss_pred cc-cccchhhHHHHHhc----CCCCcccccccC
Q 014400 295 CA-HNFHIECIDEWLRL----NVKCPRCRCSVF 322 (425)
Q Consensus 295 C~-HiFH~~CL~~WL~~----~~tCP~CR~~V~ 322 (425)
|. .-||..|+. |.. +-.||.|+..-.
T Consensus 57 C~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 57 CSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 55 579999997 433 347999986543
No 106
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.69 E-value=6.6 Score=30.55 Aligned_cols=25 Identities=32% Similarity=0.805 Sum_probs=18.0
Q ss_pred cccccchhhHHHHHhc-----CCCCccccc
Q 014400 295 CAHNFHIECIDEWLRL-----NVKCPRCRC 319 (425)
Q Consensus 295 C~HiFH~~CL~~WL~~-----~~tCP~CR~ 319 (425)
|...||..||..=|.. .=.||.|+.
T Consensus 47 C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 47 CNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCccccccccCCCccCCCCCCCcCCcCccC
Confidence 8889999999854332 226999964
No 107
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=35.65 E-value=7 Score=29.72 Aligned_cols=26 Identities=42% Similarity=0.893 Sum_probs=18.6
Q ss_pred cccccchhhHHHHHhc-----CCCCcccccc
Q 014400 295 CAHNFHIECIDEWLRL-----NVKCPRCRCS 320 (425)
Q Consensus 295 C~HiFH~~CL~~WL~~-----~~tCP~CR~~ 320 (425)
|...||..||..=|.. .=.||.|+.+
T Consensus 39 C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 39 CDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp TCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 7889999999854432 2269999753
No 108
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=35.07 E-value=9.3 Score=35.86 Aligned_cols=26 Identities=42% Similarity=0.893 Sum_probs=16.2
Q ss_pred cccccchhhHHHHHhc-----CCCCcccccc
Q 014400 295 CAHNFHIECIDEWLRL-----NVKCPRCRCS 320 (425)
Q Consensus 295 C~HiFH~~CL~~WL~~-----~~tCP~CR~~ 320 (425)
|...||..|+..=|.. .=.||.|+.+
T Consensus 195 C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 195 CDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 8889999999854433 1269999753
No 109
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=33.22 E-value=25 Score=26.68 Aligned_cols=25 Identities=36% Similarity=0.898 Sum_probs=17.9
Q ss_pred cc-cccchhhHHHHHhc----CCCCccccccc
Q 014400 295 CA-HNFHIECIDEWLRL----NVKCPRCRCSV 321 (425)
Q Consensus 295 C~-HiFH~~CL~~WL~~----~~tCP~CR~~V 321 (425)
|. .-||..|+. |.. +-.||.|+..-
T Consensus 37 C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 37 CSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 55 589999997 443 23799997654
No 110
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=32.96 E-value=16 Score=27.26 Aligned_cols=21 Identities=24% Similarity=0.776 Sum_probs=16.4
Q ss_pred cccccchhhHHHHHhcCCCCcccccccCC
Q 014400 295 CAHNFHIECIDEWLRLNVKCPRCRCSVFP 323 (425)
Q Consensus 295 C~HiFH~~CL~~WL~~~~tCP~CR~~V~~ 323 (425)
-+..||..|. +|-.|+..+..
T Consensus 19 ~~~~~H~~CF--------~C~~C~~~L~~ 39 (76)
T 1iml_A 19 LGKDWHRPCL--------KCEKCGKTLTS 39 (76)
T ss_dssp TTEEEETTTC--------BCTTTCCBCCT
T ss_pred CCccccCCCC--------CccccCccCCC
Confidence 4888998885 58899887754
No 111
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=32.91 E-value=44 Score=23.28 Aligned_cols=23 Identities=9% Similarity=-0.048 Sum_probs=9.1
Q ss_pred ccCCCCCCchhhhHHHHHHHHHH
Q 014400 115 DCLPEEGQKWGFLIWLLFSYCGL 137 (425)
Q Consensus 115 ~~l~~~~~~~~~li~~v~~~~~l 137 (425)
+|..+..+.-.+....+...+++
T Consensus 2 gCp~~~s~~~~IA~gVVgGv~~~ 24 (44)
T 2ks1_B 2 GCPTNGPKIPSIATGMVGALLLL 24 (44)
T ss_dssp CCCCCCSCSSSSTHHHHHHHHHH
T ss_pred CCCCCCCCcceEEeehhHHHHHH
Confidence 45443333334444443333333
No 112
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=32.89 E-value=17 Score=27.71 Aligned_cols=29 Identities=24% Similarity=0.470 Sum_probs=20.3
Q ss_pred ccccccchhhHHHH---------HhcCCCCcccccccC
Q 014400 294 PCAHNFHIECIDEW---------LRLNVKCPRCRCSVF 322 (425)
Q Consensus 294 pC~HiFH~~CL~~W---------L~~~~tCP~CR~~V~ 322 (425)
.|..-||..|+.-= -..+-.||.|+..-.
T Consensus 35 ~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 35 RCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp SSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 38889999998421 124678999986543
No 113
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=31.99 E-value=34 Score=29.25 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=18.9
Q ss_pred cccccchhhHHHHH------h-----cCCCCcccccc
Q 014400 295 CAHNFHIECIDEWL------R-----LNVKCPRCRCS 320 (425)
Q Consensus 295 C~HiFH~~CL~~WL------~-----~~~tCP~CR~~ 320 (425)
|-..||..||..=+ + ..=.|+.|+.+
T Consensus 75 Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 75 CHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 78899999999642 1 12389999653
No 114
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=31.33 E-value=14 Score=29.73 Aligned_cols=26 Identities=27% Similarity=0.557 Sum_probs=18.5
Q ss_pred cccccchhhHHHHHhc---CCCCcccccc
Q 014400 295 CAHNFHIECIDEWLRL---NVKCPRCRCS 320 (425)
Q Consensus 295 C~HiFH~~CL~~WL~~---~~tCP~CR~~ 320 (425)
|.--||..|+..=+.. .-.||.|+..
T Consensus 48 C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 48 CSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp TCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred CCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 8889999998642221 3479999743
No 115
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.25 E-value=22 Score=26.40 Aligned_cols=22 Identities=32% Similarity=0.851 Sum_probs=17.3
Q ss_pred ccccccchhhHHHHHhcCCCCcccccccCC
Q 014400 294 PCAHNFHIECIDEWLRLNVKCPRCRCSVFP 323 (425)
Q Consensus 294 pC~HiFH~~CL~~WL~~~~tCP~CR~~V~~ 323 (425)
.-+..||..|. +|-.|+..+..
T Consensus 27 a~~~~~H~~CF--------~C~~C~~~L~~ 48 (76)
T 2cu8_A 27 SLGKDWHKFCL--------KCERCSKTLTP 48 (76)
T ss_dssp ETTEEEETTTC--------BCSSSCCBCCT
T ss_pred ECCeEeeCCCC--------CCCCCCCccCC
Confidence 45788999885 59999888754
No 116
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=31.13 E-value=16 Score=27.86 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=17.8
Q ss_pred cccccchhhHHHHHhc--CCCCcccccc
Q 014400 295 CAHNFHIECIDEWLRL--NVKCPRCRCS 320 (425)
Q Consensus 295 C~HiFH~~CL~~WL~~--~~tCP~CR~~ 320 (425)
|.-.||..|+..=..- .=.||.|+.+
T Consensus 39 C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 39 CNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp SCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCccccccCCCCcCCCCCcCCccCcCc
Confidence 8889999999743211 2269999753
No 117
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=31.07 E-value=9.4 Score=30.29 Aligned_cols=28 Identities=21% Similarity=0.503 Sum_probs=21.0
Q ss_pred cccccchhhHHHHHhc--------CCCCcccccccC
Q 014400 295 CAHNFHIECIDEWLRL--------NVKCPRCRCSVF 322 (425)
Q Consensus 295 C~HiFH~~CL~~WL~~--------~~tCP~CR~~V~ 322 (425)
|...||..|+..=|.. .-.||.|+....
T Consensus 39 C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 39 CHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp SCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 8899999999865541 237999986553
No 118
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=30.84 E-value=14 Score=30.48 Aligned_cols=26 Identities=23% Similarity=0.561 Sum_probs=18.3
Q ss_pred eccccccchhhHHHHHh------c-CCCCcccc
Q 014400 293 LPCAHNFHIECIDEWLR------L-NVKCPRCR 318 (425)
Q Consensus 293 LpC~HiFH~~CL~~WL~------~-~~tCP~CR 318 (425)
-.|+..||..||....+ . .-.||.|+
T Consensus 27 ~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 27 ADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp SSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 34999999999976522 2 34688774
No 119
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=29.96 E-value=16 Score=35.65 Aligned_cols=22 Identities=32% Similarity=0.680 Sum_probs=15.6
Q ss_pred cchhhHHHHHhcCCCCcccccc
Q 014400 299 FHIECIDEWLRLNVKCPRCRCS 320 (425)
Q Consensus 299 FH~~CL~~WL~~~~tCP~CR~~ 320 (425)
+|..|=.+|--.+..||.|-..
T Consensus 210 ~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 210 SCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp EETTTCCEEECCTTSCSSSCCC
T ss_pred EeCCCCCEEeecCcCCcCCCCC
Confidence 3444555676678899999765
No 120
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=29.45 E-value=21 Score=28.22 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=19.3
Q ss_pred cccccchhhHHHHHhc--CCCCcccccccC
Q 014400 295 CAHNFHIECIDEWLRL--NVKCPRCRCSVF 322 (425)
Q Consensus 295 C~HiFH~~CL~~WL~~--~~tCP~CR~~V~ 322 (425)
|.-.||..|+..=+.- .-.||.|+....
T Consensus 48 C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 48 CNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp SCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCchhhcccCCCCccCCCceECccccCccc
Confidence 7778999999743211 236999976543
No 121
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=29.41 E-value=8.8 Score=31.83 Aligned_cols=27 Identities=19% Similarity=0.650 Sum_probs=17.9
Q ss_pred ceEEeccccccchhhHHHHHhcCCCCcccccc
Q 014400 289 QVRGLPCAHNFHIECIDEWLRLNVKCPRCRCS 320 (425)
Q Consensus 289 ~~~~LpC~HiFH~~CL~~WL~~~~tCP~CR~~ 320 (425)
.++-..||+.|. .=+.....||.|+..
T Consensus 67 p~~C~~CG~~F~-----~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 67 PAQCRKCGFVFK-----AEINIPSRCPKCKSE 93 (105)
T ss_dssp CCBBTTTCCBCC-----CCSSCCSSCSSSCCC
T ss_pred CcChhhCcCeec-----ccCCCCCCCcCCCCC
Confidence 356666999991 122345689999864
No 122
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=28.66 E-value=11 Score=25.02 Aligned_cols=13 Identities=23% Similarity=0.641 Sum_probs=10.9
Q ss_pred CCcCccccccccc
Q 014400 232 CSECPICLEEFHV 244 (425)
Q Consensus 232 ~~~CaICle~~~~ 244 (425)
.+.||||+.++..
T Consensus 5 GFiCP~C~~~l~s 17 (34)
T 3mjh_B 5 GFICPQCMKSLGS 17 (34)
T ss_dssp EEECTTTCCEESS
T ss_pred ccCCcHHHHHcCC
Confidence 3789999999865
No 123
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.80 E-value=28 Score=26.48 Aligned_cols=20 Identities=25% Similarity=0.805 Sum_probs=16.0
Q ss_pred cccccchhhHHHHHhcCCCCcccccccC
Q 014400 295 CAHNFHIECIDEWLRLNVKCPRCRCSVF 322 (425)
Q Consensus 295 C~HiFH~~CL~~WL~~~~tCP~CR~~V~ 322 (425)
-+..||..|+ +|-.|+..+.
T Consensus 34 ~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 34 LDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCcccccccC--------CcCcCCCCcC
Confidence 4788999885 5999988775
No 124
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=26.98 E-value=10 Score=29.54 Aligned_cols=25 Identities=44% Similarity=0.939 Sum_probs=18.5
Q ss_pred cccccchhhHHHHHhc----C-CCCccccc
Q 014400 295 CAHNFHIECIDEWLRL----N-VKCPRCRC 319 (425)
Q Consensus 295 C~HiFH~~CL~~WL~~----~-~tCP~CR~ 319 (425)
|...||..|+..=|.. . =.||.|+.
T Consensus 47 C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 47 CDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCccCcccCCCcccCCCCCCceECcCccc
Confidence 7889999999865543 1 36999975
No 125
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=26.72 E-value=37 Score=25.28 Aligned_cols=15 Identities=27% Similarity=0.565 Sum_probs=10.8
Q ss_pred CCcCcccccccccCc
Q 014400 232 CSECPICLEEFHVGN 246 (425)
Q Consensus 232 ~~~CaICle~~~~~~ 246 (425)
...|++|..++..+.
T Consensus 8 ~~~C~~C~~p~~~~~ 22 (65)
T 2vpb_A 8 VYPCGICTNEVNDDQ 22 (65)
T ss_dssp -CBCTTTCSBCCTTS
T ss_pred cCcCccCCCccCCCC
Confidence 357999999876543
No 126
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=26.69 E-value=22 Score=25.13 Aligned_cols=25 Identities=24% Similarity=0.519 Sum_probs=16.8
Q ss_pred ccccccchhhHHHH----HhcCCCCcccc
Q 014400 294 PCAHNFHIECIDEW----LRLNVKCPRCR 318 (425)
Q Consensus 294 pC~HiFH~~CL~~W----L~~~~tCP~CR 318 (425)
.|..-||..|+.-- ...+..||.|+
T Consensus 24 ~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 24 GCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp TTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred CCCccCcccccCCCccccCCCCEECCCCC
Confidence 37778999997422 12466899986
No 127
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=26.62 E-value=39 Score=26.25 Aligned_cols=14 Identities=14% Similarity=0.330 Sum_probs=11.5
Q ss_pred ccccccchhhHHHH
Q 014400 294 PCAHNFHIECIDEW 307 (425)
Q Consensus 294 pC~HiFH~~CL~~W 307 (425)
.||++|+..|....
T Consensus 42 ~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 42 NCGYVLCGDCSRHR 55 (84)
T ss_dssp TTCCEECTGGGCCE
T ss_pred CCCcEEChHHhCCe
Confidence 39999999997654
No 128
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=26.36 E-value=15 Score=27.75 Aligned_cols=26 Identities=27% Similarity=0.556 Sum_probs=18.2
Q ss_pred cccccchhhHHHHH---hcCCCCcccccc
Q 014400 295 CAHNFHIECIDEWL---RLNVKCPRCRCS 320 (425)
Q Consensus 295 C~HiFH~~CL~~WL---~~~~tCP~CR~~ 320 (425)
|..-||..|+.-=- ...-.||.|+.+
T Consensus 39 C~~WfH~~Cvgi~~~~~~~~~~C~~C~~s 67 (68)
T 3o70_A 39 CHTWIHLSCAKIRKSNVPEVFVCQKCRDS 67 (68)
T ss_dssp TCCEEETTTTTCCTTSCCSSCCCHHHHTC
T ss_pred CCccccccccCcCcccCCCcEECCCCCCC
Confidence 88899999985321 124579999753
No 129
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=26.26 E-value=31 Score=29.06 Aligned_cols=14 Identities=29% Similarity=0.612 Sum_probs=11.1
Q ss_pred ccccccchhhHHHH
Q 014400 294 PCAHNFHIECIDEW 307 (425)
Q Consensus 294 pC~HiFH~~CL~~W 307 (425)
.||++|+..|....
T Consensus 90 ~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 90 QCGNIFCAECSAKN 103 (125)
T ss_dssp TTCCEECGGGSCEE
T ss_pred CCCeEEChHHhCCc
Confidence 39999999996543
No 130
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=26.09 E-value=39 Score=26.11 Aligned_cols=14 Identities=29% Similarity=0.570 Sum_probs=11.5
Q ss_pred ccccccchhhHHHH
Q 014400 294 PCAHNFHIECIDEW 307 (425)
Q Consensus 294 pC~HiFH~~CL~~W 307 (425)
.||++|+..|....
T Consensus 40 ~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 40 NCGHIFCNTCSSNE 53 (82)
T ss_dssp TTCCEECSGGGCEE
T ss_pred CCCCEEChHHhCCe
Confidence 39999999997654
No 131
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=25.76 E-value=8.7 Score=32.52 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=20.1
Q ss_pred ccccccchhhHHHHHhcCCCCcccccccCC
Q 014400 294 PCAHNFHIECIDEWLRLNVKCPRCRCSVFP 323 (425)
Q Consensus 294 pC~HiFH~~CL~~WL~~~~tCP~CR~~V~~ 323 (425)
.||.+|+..|..........|-.|-..+..
T Consensus 40 ~CG~ifC~~Cs~~~~~~vRVC~~C~~~~~~ 69 (120)
T 1y02_A 40 DCKKNFCMTCSSQVGNGPRLCLLCQRFRAT 69 (120)
T ss_dssp TTCCEECGGGEEC----CCEEHHHHHHHHT
T ss_pred CCCCeeCHHHhCCCCCCceECHHHHHHHhc
Confidence 499999999987666556678888655433
No 132
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=25.07 E-value=23 Score=27.24 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=20.1
Q ss_pred ccccccchhhHHHHH---------hcCCCCcccccccC
Q 014400 294 PCAHNFHIECIDEWL---------RLNVKCPRCRCSVF 322 (425)
Q Consensus 294 pC~HiFH~~CL~~WL---------~~~~tCP~CR~~V~ 322 (425)
.|..-||..|+.-=- ..+..||.|+..-.
T Consensus 37 ~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~ 74 (78)
T 1wew_A 37 RCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSG 74 (78)
T ss_dssp TTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCS
T ss_pred cCCccccCEEEccccccccccccCCCCEECCCCCcccC
Confidence 488899999985321 13558999986543
No 133
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=24.88 E-value=26 Score=36.37 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=20.1
Q ss_pred cccccchhhHHHHHh-----cCCCCcccccccCC
Q 014400 295 CAHNFHIECIDEWLR-----LNVKCPRCRCSVFP 323 (425)
Q Consensus 295 C~HiFH~~CL~~WL~-----~~~tCP~CR~~V~~ 323 (425)
|.--||..|+.-=-. .+-.||.|+..-.+
T Consensus 58 C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~ 91 (488)
T 3kv5_D 58 CKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHGS 91 (488)
T ss_dssp TCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHHCS
T ss_pred CCCceeeeecCcCcccccCCCEEECCCCcCCcCc
Confidence 888899999943211 23589999876543
No 134
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=24.77 E-value=32 Score=31.43 Aligned_cols=14 Identities=21% Similarity=0.527 Sum_probs=11.2
Q ss_pred ccccccchhhHHHH
Q 014400 294 PCAHNFHIECIDEW 307 (425)
Q Consensus 294 pC~HiFH~~CL~~W 307 (425)
.||++||..|....
T Consensus 182 ~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 182 NCGQVFCGQCTAKQ 195 (220)
T ss_dssp TTCCEECSTTSCEE
T ss_pred CcCCEEChHHhCCe
Confidence 39999999996544
No 135
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.75 E-value=48 Score=25.47 Aligned_cols=23 Identities=17% Similarity=0.501 Sum_probs=17.9
Q ss_pred eccccccchhhHHHHHhcCCCCcccccccCC
Q 014400 293 LPCAHNFHIECIDEWLRLNVKCPRCRCSVFP 323 (425)
Q Consensus 293 LpC~HiFH~~CL~~WL~~~~tCP~CR~~V~~ 323 (425)
..-+..||..|+ .|-.|+..+..
T Consensus 41 ~a~~~~~H~~CF--------~C~~C~~~L~~ 63 (90)
T 2dar_A 41 VALGKSWHPEEF--------NCAHCKNTMAY 63 (90)
T ss_dssp EETTEEECTTTC--------BCSSSCCBCSS
T ss_pred EECCccccccCC--------ccCCCCCCCCC
Confidence 346889999886 69999888754
No 136
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=24.17 E-value=34 Score=31.52 Aligned_cols=14 Identities=21% Similarity=0.681 Sum_probs=11.6
Q ss_pred ccccccchhhHHHH
Q 014400 294 PCAHNFHIECIDEW 307 (425)
Q Consensus 294 pC~HiFH~~CL~~W 307 (425)
.||++|+..|-...
T Consensus 185 ~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 185 ACGQIFCGKCSSKY 198 (226)
T ss_dssp TTCCEECTTTCCEE
T ss_pred CCcCEeChhhcCCc
Confidence 39999999997654
No 137
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=24.16 E-value=37 Score=26.81 Aligned_cols=28 Identities=21% Similarity=0.474 Sum_probs=18.5
Q ss_pred ccccccchhhHHHHHhc------CCCCccccccc
Q 014400 294 PCAHNFHIECIDEWLRL------NVKCPRCRCSV 321 (425)
Q Consensus 294 pC~HiFH~~CL~~WL~~------~~tCP~CR~~V 321 (425)
.||++|+..|....... ...|-.|-..+
T Consensus 41 ~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 74 (90)
T 3t7l_A 41 ACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETI 74 (90)
T ss_dssp TTCCEECGGGSCEEEEETTTTEEEEECHHHHHHH
T ss_pred CCCCEECCcccCCeeecCCCCCCCeECHHHHHHH
Confidence 49999999998765422 22466665444
No 138
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=23.93 E-value=73 Score=24.23 Aligned_cols=6 Identities=33% Similarity=0.290 Sum_probs=2.3
Q ss_pred HHHHHH
Q 014400 132 FSYCGL 137 (425)
Q Consensus 132 ~~~~~l 137 (425)
...+++
T Consensus 15 Gg~~~l 20 (70)
T 2klu_A 15 GGVAGL 20 (70)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 333333
No 139
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.88 E-value=44 Score=25.88 Aligned_cols=13 Identities=31% Similarity=0.695 Sum_probs=10.4
Q ss_pred CCcCccccccccc
Q 014400 232 CSECPICLEEFHV 244 (425)
Q Consensus 232 ~~~CaICle~~~~ 244 (425)
...|.+|...|..
T Consensus 14 ~~~C~~C~~~F~~ 26 (84)
T 1x4u_A 14 FGNCTGCSATFSV 26 (84)
T ss_dssp CSSCSSSCCCCCS
T ss_pred CCcCcCcCCcccc
Confidence 3579999999965
No 140
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=23.86 E-value=56 Score=25.88 Aligned_cols=16 Identities=25% Similarity=0.521 Sum_probs=14.0
Q ss_pred cccccchhhHHHHHhc
Q 014400 295 CAHNFHIECIDEWLRL 310 (425)
Q Consensus 295 C~HiFH~~CL~~WL~~ 310 (425)
=.|.|+..|-+.-+++
T Consensus 37 ~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 37 PSHKFCFPCSRESIKA 52 (93)
T ss_dssp SSCEECHHHHHHHHHH
T ss_pred cCCeeeccccHHHHHh
Confidence 4699999999999876
No 141
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.11 E-value=52 Score=23.82 Aligned_cols=21 Identities=24% Similarity=0.631 Sum_probs=16.4
Q ss_pred cccccchhhHHHHHhcCCCCcccccccCC
Q 014400 295 CAHNFHIECIDEWLRLNVKCPRCRCSVFP 323 (425)
Q Consensus 295 C~HiFH~~CL~~WL~~~~tCP~CR~~V~~ 323 (425)
-+..||..|. +|-.|+..+..
T Consensus 25 ~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1x4k_A 25 KGSSWHETCF--------ICHRCQQPIGT 45 (72)
T ss_dssp TTEEEETTTT--------CCSSSCCCCCS
T ss_pred CcCeecccCC--------cccccCCccCC
Confidence 5778999886 58899887754
No 142
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=22.78 E-value=47 Score=26.15 Aligned_cols=28 Identities=18% Similarity=0.486 Sum_probs=17.8
Q ss_pred ccccccchhhHHHHHhc-------CCCCccccccc
Q 014400 294 PCAHNFHIECIDEWLRL-------NVKCPRCRCSV 321 (425)
Q Consensus 294 pC~HiFH~~CL~~WL~~-------~~tCP~CR~~V 321 (425)
.||++|+..|....+.. ...|-.|-..+
T Consensus 30 ~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l 64 (88)
T 1wfk_A 30 NCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTIL 64 (88)
T ss_dssp SSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHH
T ss_pred CCCCEEChhHcCCceeccccCCCcCEECHHHHHHH
Confidence 39999999997654321 22466665544
No 143
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.77 E-value=69 Score=24.20 Aligned_cols=22 Identities=32% Similarity=0.952 Sum_probs=16.8
Q ss_pred ccccccchhhHHHHHhcCCCCcccccccCC
Q 014400 294 PCAHNFHIECIDEWLRLNVKCPRCRCSVFP 323 (425)
Q Consensus 294 pC~HiFH~~CL~~WL~~~~tCP~CR~~V~~ 323 (425)
.-+..||..|. +|-.|+..+..
T Consensus 33 a~~~~wH~~CF--------~C~~C~~~L~~ 54 (82)
T 2co8_A 33 VNGHFFHRSCF--------RCHTCEATLWP 54 (82)
T ss_dssp BTTBCCBTTTC--------BCSSSCCBCCT
T ss_pred ECCCeeCCCcC--------EEcCCCCCcCC
Confidence 35778999985 58889887754
No 144
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.66 E-value=38 Score=25.37 Aligned_cols=21 Identities=24% Similarity=0.486 Sum_probs=16.1
Q ss_pred ccccccchhhHHHHHhcCCCCcccccccC
Q 014400 294 PCAHNFHIECIDEWLRLNVKCPRCRCSVF 322 (425)
Q Consensus 294 pC~HiFH~~CL~~WL~~~~tCP~CR~~V~ 322 (425)
.-+..||..|. +|-.|+..+.
T Consensus 32 a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 32 LRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CSSCEECTTTT--------SCSSSCCCHH
T ss_pred ECcceeCcCcC--------eeCCCCCCCC
Confidence 35788999886 5888887763
No 145
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=22.28 E-value=52 Score=24.78 Aligned_cols=13 Identities=23% Similarity=0.373 Sum_probs=10.7
Q ss_pred ccccccchhhHHH
Q 014400 294 PCAHNFHIECIDE 306 (425)
Q Consensus 294 pC~HiFH~~CL~~ 306 (425)
.||++|+..|...
T Consensus 32 ~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 32 SCGGVFCQEHSSN 44 (73)
T ss_dssp TTCCEECGGGSCE
T ss_pred CCCEEEcccccCC
Confidence 3999999999653
No 146
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=22.09 E-value=24 Score=26.84 Aligned_cols=27 Identities=26% Similarity=0.537 Sum_probs=19.1
Q ss_pred cccccchhhHHHHHh-----cCCCCccccccc
Q 014400 295 CAHNFHIECIDEWLR-----LNVKCPRCRCSV 321 (425)
Q Consensus 295 C~HiFH~~CL~~WL~-----~~~tCP~CR~~V 321 (425)
|.--||..|+.---. ..-.||.|+...
T Consensus 31 C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 31 CKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp TCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHH
T ss_pred CCCCEecccccccccccCCCCEEECCCCcccC
Confidence 888899999953211 245799998654
No 147
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=22.04 E-value=17 Score=27.51 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=19.5
Q ss_pred cccccchhhHHHHH----hcCCCCcccccccC
Q 014400 295 CAHNFHIECIDEWL----RLNVKCPRCRCSVF 322 (425)
Q Consensus 295 C~HiFH~~CL~~WL----~~~~tCP~CR~~V~ 322 (425)
|..-||..|+.-=- ..+..||.|+.+-.
T Consensus 37 C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~ 68 (72)
T 1wee_A 37 CGVWHHTRCIGINNADALPSKFLCFRCIELSG 68 (72)
T ss_dssp SCEEEETTTTTCCTTSCCCSCCCCHHHHHHCS
T ss_pred CCCccCCeeeccCccccCCCcEECCCccCCCC
Confidence 88889999985421 23458999986543
No 148
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=21.33 E-value=17 Score=26.64 Aligned_cols=23 Identities=43% Similarity=1.016 Sum_probs=16.7
Q ss_pred cc-cccchhhHHHHHhc----CCCCccccc
Q 014400 295 CA-HNFHIECIDEWLRL----NVKCPRCRC 319 (425)
Q Consensus 295 C~-HiFH~~CL~~WL~~----~~tCP~CR~ 319 (425)
|. .-||..|+. |.. +-.||.|+.
T Consensus 30 C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 30 CPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCCEecccCC--cccCCCCCEECcCccC
Confidence 55 589999997 433 337999975
No 149
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=21.15 E-value=33 Score=28.20 Aligned_cols=12 Identities=33% Similarity=0.999 Sum_probs=10.9
Q ss_pred cchhhHHHHHhc
Q 014400 299 FHIECIDEWLRL 310 (425)
Q Consensus 299 FH~~CL~~WL~~ 310 (425)
||..||..|++.
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
No 150
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=21.03 E-value=33 Score=28.13 Aligned_cols=12 Identities=33% Similarity=0.919 Sum_probs=10.8
Q ss_pred cchhhHHHHHhc
Q 014400 299 FHIECIDEWLRL 310 (425)
Q Consensus 299 FH~~CL~~WL~~ 310 (425)
||..||..|+..
T Consensus 42 FCRNCLskWy~~ 53 (104)
T 3fyb_A 42 FCRNCLAKWLME 53 (104)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
No 151
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.93 E-value=48 Score=24.05 Aligned_cols=22 Identities=18% Similarity=0.495 Sum_probs=16.9
Q ss_pred ccccccchhhHHHHHhcCCCCcccccccCC
Q 014400 294 PCAHNFHIECIDEWLRLNVKCPRCRCSVFP 323 (425)
Q Consensus 294 pC~HiFH~~CL~~WL~~~~tCP~CR~~V~~ 323 (425)
.-+..||..|. +|-.|+..+..
T Consensus 24 a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 24 YGGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp STTCCEETTTC--------BCTTTCCBTTT
T ss_pred ECccccCcccC--------eECCCCCcCCC
Confidence 35788999885 58899887754
No 152
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.73 E-value=53 Score=23.73 Aligned_cols=22 Identities=23% Similarity=0.658 Sum_probs=17.0
Q ss_pred ccccccchhhHHHHHhcCCCCcccccccCC
Q 014400 294 PCAHNFHIECIDEWLRLNVKCPRCRCSVFP 323 (425)
Q Consensus 294 pC~HiFH~~CL~~WL~~~~tCP~CR~~V~~ 323 (425)
.-+..||..|. +|-.|+..+..
T Consensus 22 a~~~~~H~~CF--------~C~~C~~~L~~ 43 (70)
T 2d8x_A 22 AMNNSWHPECF--------RCDLCQEVLAD 43 (70)
T ss_dssp ETTEEECTTTS--------BCSSSCCBCSS
T ss_pred ECcccccccCC--------EeCCCCCcCCC
Confidence 35778999886 68899887754
No 153
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=20.35 E-value=56 Score=25.00 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=17.2
Q ss_pred ccccccchhhHHHHHhcCCCCcccccccCC
Q 014400 294 PCAHNFHIECIDEWLRLNVKCPRCRCSVFP 323 (425)
Q Consensus 294 pC~HiFH~~CL~~WL~~~~tCP~CR~~V~~ 323 (425)
.-+..||.+|. +|-.|+..+..
T Consensus 42 a~~~~~H~~CF--------~C~~C~~~L~~ 63 (89)
T 1x64_A 42 ARDKYRHPECF--------VCADCNLNLKQ 63 (89)
T ss_dssp SSSCEECTTTC--------CCSSSCCCTTT
T ss_pred ECCceECccCC--------EecCCCCCCCC
Confidence 36788999885 58899888754
No 154
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=20.32 E-value=22 Score=35.44 Aligned_cols=28 Identities=18% Similarity=0.379 Sum_probs=0.0
Q ss_pred ccccccchhhHHHHHhc-------CCCCccccccc
Q 014400 294 PCAHNFHIECIDEWLRL-------NVKCPRCRCSV 321 (425)
Q Consensus 294 pC~HiFH~~CL~~WL~~-------~~tCP~CR~~V 321 (425)
.||++||..|-...+.. ...|-.|-..+
T Consensus 396 ~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 396 ACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp -----------------------------------
T ss_pred cCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 49999999999776422 23566665443
No 155
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=20.07 E-value=18 Score=26.53 Aligned_cols=21 Identities=38% Similarity=0.882 Sum_probs=15.5
Q ss_pred cccchhhHHHHHhc----CCCCccccc
Q 014400 297 HNFHIECIDEWLRL----NVKCPRCRC 319 (425)
Q Consensus 297 HiFH~~CL~~WL~~----~~tCP~CR~ 319 (425)
.-||..|+. |.. +-.||.|+.
T Consensus 34 ~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 34 EWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred ceEehhcCC--CCcCCCCCEECcCccC
Confidence 579999997 443 237999965
Done!