BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014401
(425 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|297746227|emb|CBI16283.3| unnamed protein product [Vitis vinifera]
Length = 494
Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/401 (82%), Positives = 361/401 (90%), Gaps = 1/401 (0%)
Query: 25 NG-GLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQK 83
NG GL+AWER+YAD+RSWE+LQEDESG LRPIDN YHAQYRRR+R TTARIQK
Sbjct: 93 NGRGLDAWERAYADERSWESLQEDESGLLRPIDNKTIYHAQYRRRIRSLYSSTTTARIQK 152
Query: 84 GLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVAN 143
GLIRYLYIV+DLSRAA+EMDF+PSRMAVVAK +EAF+REFFDQNPLSQIGLVT+KDG+A
Sbjct: 153 GLIRYLYIVVDLSRAASEMDFKPSRMAVVAKHIEAFIREFFDQNPLSQIGLVTIKDGLAQ 212
Query: 144 CLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTC 203
CLTDLGGSP+SH+KALMGKL CSGDSSLQNALDLV G L+QIPSYGHREVLILYSALSTC
Sbjct: 213 CLTDLGGSPDSHVKALMGKLECSGDSSLQNALDLVHGYLNQIPSYGHREVLILYSALSTC 272
Query: 204 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAP 263
DPGDIMETIQ+CK+SKIRCSVIGLSAE+FIC+HLCQ+TGGSYSVALDESHFKEL++EHAP
Sbjct: 273 DPGDIMETIQECKKSKIRCSVIGLSAEIFICRHLCQETGGSYSVALDESHFKELLLEHAP 332
Query: 264 PPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRI 323
PPPAIAEFAIANLIKMGFPQRA EG ISICSCHKE KVG GYTCPRCKARVCELPT+CRI
Sbjct: 333 PPPAIAEFAIANLIKMGFPQRAAEGVISICSCHKEAKVGGGYTCPRCKARVCELPTECRI 392
Query: 324 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 383
CGL LVSSPHLARSYHHLFPI PFDEV+ LN+P RS CFGCQ+SLL GNKP L
Sbjct: 393 CGLTLVSSPHLARSYHHLFPIPPFDEVSLSLLNNPHQRSSRACFGCQESLLIPGNKPTLC 452
Query: 384 VACPKCKKHFCLECDIYIHESLHNCPGCESLRHSNPIVANE 424
VACPKCK+HFCL+CDIYIHESLHNCPGCES RHS + E
Sbjct: 453 VACPKCKQHFCLDCDIYIHESLHNCPGCESFRHSKIVSVTE 493
>gi|225435253|ref|XP_002284994.1| PREDICTED: general transcription factor IIH subunit 2 [Vitis
vinifera]
Length = 433
Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/401 (82%), Positives = 361/401 (90%), Gaps = 1/401 (0%)
Query: 25 NG-GLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQK 83
NG GL+AWER+YAD+RSWE+LQEDESG LRPIDN YHAQYRRR+R TTARIQK
Sbjct: 32 NGRGLDAWERAYADERSWESLQEDESGLLRPIDNKTIYHAQYRRRIRSLYSSTTTARIQK 91
Query: 84 GLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVAN 143
GLIRYLYIV+DLSRAA+EMDF+PSRMAVVAK +EAF+REFFDQNPLSQIGLVT+KDG+A
Sbjct: 92 GLIRYLYIVVDLSRAASEMDFKPSRMAVVAKHIEAFIREFFDQNPLSQIGLVTIKDGLAQ 151
Query: 144 CLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTC 203
CLTDLGGSP+SH+KALMGKL CSGDSSLQNALDLV G L+QIPSYGHREVLILYSALSTC
Sbjct: 152 CLTDLGGSPDSHVKALMGKLECSGDSSLQNALDLVHGYLNQIPSYGHREVLILYSALSTC 211
Query: 204 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAP 263
DPGDIMETIQ+CK+SKIRCSVIGLSAE+FIC+HLCQ+TGGSYSVALDESHFKEL++EHAP
Sbjct: 212 DPGDIMETIQECKKSKIRCSVIGLSAEIFICRHLCQETGGSYSVALDESHFKELLLEHAP 271
Query: 264 PPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRI 323
PPPAIAEFAIANLIKMGFPQRA EG ISICSCHKE KVG GYTCPRCKARVCELPT+CRI
Sbjct: 272 PPPAIAEFAIANLIKMGFPQRAAEGVISICSCHKEAKVGGGYTCPRCKARVCELPTECRI 331
Query: 324 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 383
CGL LVSSPHLARSYHHLFPI PFDEV+ LN+P RS CFGCQ+SLL GNKP L
Sbjct: 332 CGLTLVSSPHLARSYHHLFPIPPFDEVSLSLLNNPHQRSSRACFGCQESLLIPGNKPTLC 391
Query: 384 VACPKCKKHFCLECDIYIHESLHNCPGCESLRHSNPIVANE 424
VACPKCK+HFCL+CDIYIHESLHNCPGCES RHS + E
Sbjct: 392 VACPKCKQHFCLDCDIYIHESLHNCPGCESFRHSKIVSVTE 432
>gi|449451946|ref|XP_004143721.1| PREDICTED: general transcription factor IIH subunit 2-like [Cucumis
sativus]
Length = 423
Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/426 (77%), Positives = 374/426 (87%), Gaps = 5/426 (1%)
Query: 1 MTNSERKRLNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAF 60
M N E +RLNGEA+EE++D+D N GL AWER+YADDRSWEALQEDESG LRPIDN A
Sbjct: 1 MNNGENRRLNGEADEEDDDDDAN---GLAAWERTYADDRSWEALQEDESGLLRPIDNKAI 57
Query: 61 YHAQYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFV 120
YHAQYRRRLR S +ATTARIQKGLIRYLYIVID S+AA EMDFRPSRMAVVAK V+AFV
Sbjct: 58 YHAQYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVDAFV 117
Query: 121 REFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQG 180
REFFDQNPLSQIGLVT+KDG ANCLTDLGGSPESH+KALMGKL CSGD+SLQN L+LV
Sbjct: 118 REFFDQNPLSQIGLVTIKDGFANCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHS 177
Query: 181 LLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQD 240
L+QIPSYGHREVL+LYSAL++CDPGDIMET+QKCK SKIRCSVIGL+AE+FIC+HLCQ+
Sbjct: 178 YLNQIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQE 237
Query: 241 TGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVK 300
TGGSYSVALDESHFKEL++EHAPPPPAIA+ A+ NLIKMGFPQRA E SI+ICSCHKE K
Sbjct: 238 TGGSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAK 297
Query: 301 VGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRN 360
VG GYTCPRCKARVCELPT+CRICGL L+SSPHLARSYHHLFPI PFDEV+ +DPR+
Sbjct: 298 VGGGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRH 357
Query: 361 RSRSTCFGCQQSLL--SSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLRHSN 418
+ CFGCQ+SL+ S+GN P + V+CPKCK+HFCL+CDIYIHESLHNCPGCES R
Sbjct: 358 QLPKVCFGCQESLMNPSTGNSPSIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPK 417
Query: 419 PIVANE 424
++E
Sbjct: 418 LATSDE 423
>gi|357509341|ref|XP_003624959.1| General transcription factor IIH subunit [Medicago truncatula]
gi|355499974|gb|AES81177.1| General transcription factor IIH subunit [Medicago truncatula]
Length = 426
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/425 (76%), Positives = 370/425 (87%), Gaps = 6/425 (1%)
Query: 1 MTNSERKRLNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAF 60
M N K LNG+ E+++EDE ++ GLEAWER+Y +DRSWE+LQEDESG LRPID +A
Sbjct: 1 MNNIAGKPLNGDLEDDDEDEANDD--GLEAWERAYTEDRSWESLQEDESGLLRPIDTTAI 58
Query: 61 YHAQYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFV 120
+HAQYRRRLR + A TARIQKGLIRYLYIV+DLS+AA+E DFRPSRMAV+AKQVE F+
Sbjct: 59 HHAQYRRRLRALASNAATARIQKGLIRYLYIVVDLSKAASERDFRPSRMAVIAKQVELFI 118
Query: 121 REFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQG 180
REFFDQNPLS +GLVT KDGVANCLTDLGGSPESHIKALMGKL CSGD+SLQNAL+LV
Sbjct: 119 REFFDQNPLSHVGLVTTKDGVANCLTDLGGSPESHIKALMGKLECSGDASLQNALELVHS 178
Query: 181 LLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQD 240
L+QIPSYGHREVLILYSALSTCDPGD+METIQKCK+SKIRCSVIGL+AEMFICKHLCQ+
Sbjct: 179 NLNQIPSYGHREVLILYSALSTCDPGDLMETIQKCKKSKIRCSVIGLAAEMFICKHLCQE 238
Query: 241 TGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVK 300
TGG+YSVALDESHFKELI+EH+PPPPAIAE+A ANLIKMGFPQRA EGS++IC+CH+E K
Sbjct: 239 TGGTYSVALDESHFKELILEHSPPPPAIAEYATANLIKMGFPQRAAEGSVAICTCHEEAK 298
Query: 301 VGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRN 360
G GYTCPRCK RVCELPT+CR+CGL L+SSPHLARSYHHLFPI PF E++P NDP +
Sbjct: 299 TGGGYTCPRCKVRVCELPTECRVCGLTLISSPHLARSYHHLFPIVPFAEISPSSQNDPNH 358
Query: 361 RSRSTCFGCQQSLLS----SGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLRH 416
+TCFGCQQSLLS +GNK L V+CPKCK+ FCL+CD+YIHESLHNCPGCES RH
Sbjct: 359 SFPNTCFGCQQSLLSQGFGAGNKAELSVSCPKCKQQFCLDCDMYIHESLHNCPGCESFRH 418
Query: 417 SNPIV 421
S +
Sbjct: 419 SKSVT 423
>gi|224119296|ref|XP_002331276.1| predicted protein [Populus trichocarpa]
gi|222873701|gb|EEF10832.1| predicted protein [Populus trichocarpa]
Length = 412
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/388 (82%), Positives = 350/388 (90%), Gaps = 1/388 (0%)
Query: 31 W-ERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYL 89
W ER+Y+D+RSWEALQEDESG LRP+DN A YHAQYRRRLR S + + RIQKGLIR+L
Sbjct: 25 WGERNYSDERSWEALQEDESGLLRPLDNKAMYHAQYRRRLRSLSTASNSQRIQKGLIRFL 84
Query: 90 YIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
YIV+DLSRAA+ MDFRPSRMAVVA+ VEAF+REFFDQNPLSQI LVT+KDGVA LT+LG
Sbjct: 85 YIVLDLSRAASVMDFRPSRMAVVAQNVEAFIREFFDQNPLSQIALVTIKDGVAYSLTELG 144
Query: 150 GSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIM 209
GSPESHIKALM KL CSGDSSLQNAL+LV L +IPSYG+REVLILYSAL+TCDPGDIM
Sbjct: 145 GSPESHIKALMAKLECSGDSSLQNALELVHEYLDKIPSYGNREVLILYSALTTCDPGDIM 204
Query: 210 ETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIA 269
ETIQKCK+SK+RCSVIGLSAEMFICKHLCQ+TGG YSVALDESHFKELI+EHAPPPPAIA
Sbjct: 205 ETIQKCKKSKMRCSVIGLSAEMFICKHLCQETGGLYSVALDESHFKELILEHAPPPPAIA 264
Query: 270 EFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLV 329
EFAIANLIKMGFPQRA EGSISICSCHKE KVG GY CPRCKARVCELPT+CRICGL LV
Sbjct: 265 EFAIANLIKMGFPQRAAEGSISICSCHKESKVGEGYICPRCKARVCELPTECRICGLTLV 324
Query: 330 SSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKC 389
SSPHLARSYHHLFPIAPFDEV P N+P RS+ TCFGCQQSL++ GNKP L VACPKC
Sbjct: 325 SSPHLARSYHHLFPIAPFDEVKPSRQNEPHRRSQKTCFGCQQSLVNPGNKPSLQVACPKC 384
Query: 390 KKHFCLECDIYIHESLHNCPGCESLRHS 417
K++FCL+CDIYIHESLHNCPGCESLR S
Sbjct: 385 KQYFCLDCDIYIHESLHNCPGCESLRAS 412
>gi|356571915|ref|XP_003554116.1| PREDICTED: general transcription factor IIH subunit 2-like [Glycine
max]
Length = 420
Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/397 (79%), Positives = 358/397 (90%)
Query: 28 LEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIR 87
LEAWER+YA+DRSWEALQEDESG LRPID +A YHAQYRRRLR + A TARIQKGLIR
Sbjct: 24 LEAWERTYAEDRSWEALQEDESGLLRPIDTTAIYHAQYRRRLRTLAATAATARIQKGLIR 83
Query: 88 YLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTD 147
YLYIV+DLS+AA+E DFRPSRMAV+ KQVEAF+REFFDQNPLS +GLVT+KDG+A+C+T+
Sbjct: 84 YLYIVVDLSKAASERDFRPSRMAVMGKQVEAFIREFFDQNPLSHVGLVTIKDGIAHCITE 143
Query: 148 LGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 207
LGGSPESHIKALMGKL CSGD+SLQNAL+LV G L+QIPSYGHREVLILYSALSTCDPGD
Sbjct: 144 LGGSPESHIKALMGKLECSGDASLQNALELVLGYLNQIPSYGHREVLILYSALSTCDPGD 203
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 267
+METIQKCK+SKIRCSVIGL+AEMF+CKHLCQ+TGG+YSVALDESHFKELI+EHAPPPPA
Sbjct: 204 LMETIQKCKKSKIRCSVIGLAAEMFVCKHLCQETGGTYSVALDESHFKELILEHAPPPPA 263
Query: 268 IAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQ 327
IAE+A ANLIKMGFPQR+ EGS++IC+CH+E K G GYTCPRCK RVCELPT+CR+CGL
Sbjct: 264 IAEYATANLIKMGFPQRSAEGSVAICTCHEEAKTGGGYTCPRCKVRVCELPTECRVCGLT 323
Query: 328 LVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACP 387
L+SSPHLARSYHHLFPI FDEVTP ND + +TCFGCQQSLLS GNKPGL V CP
Sbjct: 324 LISSPHLARSYHHLFPIVMFDEVTPSSQNDSNHSFPNTCFGCQQSLLSQGNKPGLSVICP 383
Query: 388 KCKKHFCLECDIYIHESLHNCPGCESLRHSNPIVANE 424
KCK+ FCL+CDIY+HESLHNCPGCES RHS + A++
Sbjct: 384 KCKQQFCLDCDIYVHESLHNCPGCESSRHSKSVTASQ 420
>gi|297848764|ref|XP_002892263.1| ATGTF2H2/GTF2H2 [Arabidopsis lyrata subsp. lyrata]
gi|297338105|gb|EFH68522.1| ATGTF2H2/GTF2H2 [Arabidopsis lyrata subsp. lyrata]
Length = 421
Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/389 (79%), Positives = 343/389 (88%), Gaps = 1/389 (0%)
Query: 27 GLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLI 86
G+ WER+Y DDRSWE LQEDESG LRPIDNSA YHAQYRRRLR S A RIQKGLI
Sbjct: 22 GIGEWERAYVDDRSWEELQEDESGLLRPIDNSAIYHAQYRRRLRMLSAAAAGTRIQKGLI 81
Query: 87 RYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLT 146
RYLYIVID SRAAAEMDFRPSRMA++AK VEAF+REFFDQNPLSQIGLV++K+GVA+ LT
Sbjct: 82 RYLYIVIDFSRAAAEMDFRPSRMAIMAKHVEAFIREFFDQNPLSQIGLVSIKNGVAHTLT 141
Query: 147 DLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPG 206
DLGGSPE+HIKALMGKL GDSSLQNAL+LV L+Q+PSYGHREVLILYSAL TCDPG
Sbjct: 142 DLGGSPETHIKALMGKLEALGDSSLQNALELVHEHLNQVPSYGHREVLILYSALCTCDPG 201
Query: 207 DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPP 266
DIMETIQKCK+SK+RCSVIGLSAEMFICKHLCQ+TGG YSVA+DE H K+L++EHAPPPP
Sbjct: 202 DIMETIQKCKKSKLRCSVIGLSAEMFICKHLCQETGGLYSVAVDEVHLKDLLLEHAPPPP 261
Query: 267 AIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGL 326
AIAEFAIANLIKMGFPQRA EGS++ICSCHKEVK+G GY CPRCKARVC+LPT+C ICGL
Sbjct: 262 AIAEFAIANLIKMGFPQRAAEGSMAICSCHKEVKIGAGYMCPRCKARVCDLPTECTICGL 321
Query: 327 QLVSSPHLARSYHHLFPIAPFDEVTPL-CLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVA 385
LVSSPHLARSYHHLFPIAPFDEV L LND R + +CFGCQQSL+ +GNKPG V
Sbjct: 322 TLVSSPHLARSYHHLFPIAPFDEVPALSSLNDNRRKLGKSCFGCQQSLIGAGNKPGPCVT 381
Query: 386 CPKCKKHFCLECDIYIHESLHNCPGCESL 414
C KCK +FCL+CDIYIHESLHNCPGCES+
Sbjct: 382 CRKCKHYFCLDCDIYIHESLHNCPGCESI 410
>gi|356538258|ref|XP_003537621.1| PREDICTED: general transcription factor IIH subunit 2-like [Glycine
max]
Length = 419
Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/398 (78%), Positives = 356/398 (89%), Gaps = 7/398 (1%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYL 89
AWER+YA+DRSWEALQEDESG LRPID +A YHAQYRRRLR + A TARIQKGLIRYL
Sbjct: 26 AWERTYAEDRSWEALQEDESGLLRPIDTTAIYHAQYRRRLRTLAATAATARIQKGLIRYL 85
Query: 90 YIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
YIV+DLS+AA+E DFRPSRM V+ KQVEAF+REFFDQNPLS +GLVT+KDG+A+C+T+LG
Sbjct: 86 YIVVDLSKAASERDFRPSRMVVMGKQVEAFIREFFDQNPLSHVGLVTIKDGIAHCITELG 145
Query: 150 GSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIM 209
GSPESHIKALMGKL CSGD+SLQNAL+LV G L+QIPSYGHREVLILYSALSTCDPGD+M
Sbjct: 146 GSPESHIKALMGKLECSGDASLQNALELVLGYLNQIPSYGHREVLILYSALSTCDPGDLM 205
Query: 210 ETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIA 269
ETIQKCK+SKIRCSVIGL+AEMF+CKHLC++TGG+YSVALDESHFKELI+EHAPPPPAIA
Sbjct: 206 ETIQKCKKSKIRCSVIGLAAEMFVCKHLCEETGGTYSVALDESHFKELILEHAPPPPAIA 265
Query: 270 EFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLV 329
E++ ANLIKMGFPQR+ EGS++IC+CH+E K G GYTCPRCK RVCELPT+CR+CGL L+
Sbjct: 266 EYSTANLIKMGFPQRSAEGSVAICTCHEEAKTGGGYTCPRCKVRVCELPTECRVCGLTLI 325
Query: 330 SSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRS---TCFGCQQSLLSSGNKPGLYVAC 386
SSPHLARSYHHLFPI FDEVTP ++ SRS TCFGCQQSLLS GNKPGL V C
Sbjct: 326 SSPHLARSYHHLFPIVMFDEVTP----SQKDSSRSFPNTCFGCQQSLLSQGNKPGLSVIC 381
Query: 387 PKCKKHFCLECDIYIHESLHNCPGCESLRHSNPIVANE 424
PKCK+ FCL+CDIY+HESLHNCPGCES RHS + A++
Sbjct: 382 PKCKQQFCLDCDIYVHESLHNCPGCESSRHSKSVTASQ 419
>gi|30679101|ref|NP_683275.2| transcription initiation factor TFIIH subunit H2 [Arabidopsis
thaliana]
gi|22087278|gb|AAM90909.1|AF499443_1 p44/SSL1-like protein [Arabidopsis thaliana]
gi|4056421|gb|AAC97995.1| Similar to gb|Z30094 basic transcripion factor 2, 44 kD subunit
from Homo sapiens. EST gb|W43325 comes from this gene
[Arabidopsis thaliana]
gi|110738828|dbj|BAF01337.1| putative transcription factor [Arabidopsis thaliana]
gi|332189663|gb|AEE27784.1| transcription initiation factor TFIIH subunit H2 [Arabidopsis
thaliana]
Length = 421
Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/389 (79%), Positives = 342/389 (87%), Gaps = 1/389 (0%)
Query: 27 GLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLI 86
G+ WER+Y DDRSWE LQEDESG LRPIDNSA YHAQYRRRLR S A RIQKGLI
Sbjct: 22 GIGEWERAYVDDRSWEELQEDESGLLRPIDNSAIYHAQYRRRLRMLSAAAAGTRIQKGLI 81
Query: 87 RYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLT 146
RYLYIVID SRAAAEMDFRPSRMA++AK VEAF+REFFDQNPLSQIGLV++K+GVA+ LT
Sbjct: 82 RYLYIVIDFSRAAAEMDFRPSRMAIMAKHVEAFIREFFDQNPLSQIGLVSIKNGVAHTLT 141
Query: 147 DLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPG 206
DLGGSPE+HIKALMGKL GDSSLQNAL+LV L+Q+PSYGHREVLILYSAL TCDPG
Sbjct: 142 DLGGSPETHIKALMGKLEALGDSSLQNALELVHEHLNQVPSYGHREVLILYSALCTCDPG 201
Query: 207 DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPP 266
DIMETIQKCK+SK+RCSVIGLSAEMFICKHLCQ+TGG YSVA+DE H K+L++EHAPPPP
Sbjct: 202 DIMETIQKCKKSKLRCSVIGLSAEMFICKHLCQETGGLYSVAVDEVHLKDLLLEHAPPPP 261
Query: 267 AIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGL 326
AIAEFAIANLIKMGFPQRA EGS++ICSCHKEVK+G GY CPRCKARVC+LPT+C ICGL
Sbjct: 262 AIAEFAIANLIKMGFPQRAAEGSMAICSCHKEVKIGAGYMCPRCKARVCDLPTECTICGL 321
Query: 327 QLVSSPHLARSYHHLFPIAPFDEVTPL-CLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVA 385
LVSSPHLARSYHHLFPIAPFDEV L LND R + +CFGCQQSL+ +GNKP V
Sbjct: 322 TLVSSPHLARSYHHLFPIAPFDEVPALSSLNDNRRKLGKSCFGCQQSLIGAGNKPVPCVT 381
Query: 386 CPKCKKHFCLECDIYIHESLHNCPGCESL 414
C KCK +FCL+CDIYIHESLHNCPGCES+
Sbjct: 382 CRKCKHYFCLDCDIYIHESLHNCPGCESI 410
>gi|357164610|ref|XP_003580110.1| PREDICTED: general transcription factor IIH subunit 2-like
[Brachypodium distachyon]
Length = 428
Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust.
Identities = 294/389 (75%), Positives = 335/389 (86%), Gaps = 6/389 (1%)
Query: 28 LEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIR 87
LEAWER+YADDRSWEALQEDESG LRPID H+QYRRRL RS A RIQKGLIR
Sbjct: 41 LEAWERAYADDRSWEALQEDESGLLRPIDTKNLVHSQYRRRLLLRS-AAAAVRIQKGLIR 99
Query: 88 YLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTD 147
YLYIVIDLSRAA+EMD+RPSRMAVVAK EAF+REFFDQNPLS +GLVT+KDG+++ LTD
Sbjct: 100 YLYIVIDLSRAASEMDYRPSRMAVVAKCAEAFIREFFDQNPLSHVGLVTIKDGISHRLTD 159
Query: 148 LGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 207
+GGSPES IKALMGKL CSGDSSLQNAL+L+ G L+QIPSYGH+EVLILYSAL+TCDPGD
Sbjct: 160 IGGSPESQIKALMGKLECSGDSSLQNALELIHGYLNQIPSYGHKEVLILYSALNTCDPGD 219
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 267
+MET++KCK+SKIRCSVIGL+AE+FICKHLC++TGGSY+VALDESHFKEL++EHAPPPPA
Sbjct: 220 VMETVEKCKKSKIRCSVIGLAAEIFICKHLCEETGGSYTVALDESHFKELLLEHAPPPPA 279
Query: 268 IAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGV-GYTCPRCKARVCELPTDCRICGL 326
IAE+A ANLIKMGFPQR E ISICSCHK++K G GY CPRCK VCELPT+CR CGL
Sbjct: 280 IAEYAAANLIKMGFPQRGAEDLISICSCHKKIKSGAEGYICPRCKVNVCELPTECRTCGL 339
Query: 327 QLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVAC 386
LVSSPHLARSYHHLFP+APFDEVT + C+GCQQSL++S ++ L+V C
Sbjct: 340 TLVSSPHLARSYHHLFPVAPFDEVT----FKLGQKGGQNCYGCQQSLINSDSQSNLHVRC 395
Query: 387 PKCKKHFCLECDIYIHESLHNCPGCESLR 415
PKC +HFC +CDIYIHESLHNCPGCES R
Sbjct: 396 PKCNQHFCFDCDIYIHESLHNCPGCESQR 424
>gi|326529607|dbj|BAK04750.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 430
Score = 610 bits (1572), Expect = e-172, Method: Compositional matrix adjust.
Identities = 291/392 (74%), Positives = 335/392 (85%), Gaps = 6/392 (1%)
Query: 28 LEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIR 87
LEAWER+YADDRSWEAL+ED+SG LRPID H+QYRRR+ RS A ARIQKGLIR
Sbjct: 43 LEAWERAYADDRSWEALEEDDSGLLRPIDTKNLVHSQYRRRILLRS-AAAAARIQKGLIR 101
Query: 88 YLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTD 147
YLYIVIDLSRAA+EMD+RPSRMAVVAK EAF+REFFDQNPLS +GLVT+KDG+++ LT+
Sbjct: 102 YLYIVIDLSRAASEMDYRPSRMAVVAKCAEAFIREFFDQNPLSHVGLVTIKDGISHRLTE 161
Query: 148 LGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 207
+GGSPES I ALMGKL CSGDSSLQNAL+LV G L+QIPSYGH+EVL LYSAL+TCDPGD
Sbjct: 162 IGGSPESQINALMGKLECSGDSSLQNALELVHGYLNQIPSYGHKEVLFLYSALNTCDPGD 221
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 267
IMETI+KCK+SK+RCSVIGL+AE+FICKHLC++TGGSY+VALDESHFKEL++EHAPPPPA
Sbjct: 222 IMETIEKCKKSKVRCSVIGLAAEIFICKHLCEETGGSYTVALDESHFKELLLEHAPPPPA 281
Query: 268 IAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGV-GYTCPRCKARVCELPTDCRICGL 326
IAE+A ANLIKMGFPQR E ISICSCHK++K G GY CPRCK VCELPT+CR CGL
Sbjct: 282 IAEYAAANLIKMGFPQRGAEDLISICSCHKKIKSGAEGYICPRCKVNVCELPTECRTCGL 341
Query: 327 QLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVAC 386
LVSSPHLARSYHHLFP++PFDEVT + CFGCQQSL+++G + ++V C
Sbjct: 342 TLVSSPHLARSYHHLFPVSPFDEVT----FKLGQKGGQNCFGCQQSLINTGGQSNIHVRC 397
Query: 387 PKCKKHFCLECDIYIHESLHNCPGCESLRHSN 418
PKC HFC +CDIYIHESLHNCPGCES R S+
Sbjct: 398 PKCNHHFCFDCDIYIHESLHNCPGCESQRSSS 429
>gi|242076424|ref|XP_002448148.1| hypothetical protein SORBIDRAFT_06g022140 [Sorghum bicolor]
gi|241939331|gb|EES12476.1| hypothetical protein SORBIDRAFT_06g022140 [Sorghum bicolor]
Length = 431
Score = 603 bits (1556), Expect = e-170, Method: Compositional matrix adjust.
Identities = 296/390 (75%), Positives = 334/390 (85%), Gaps = 3/390 (0%)
Query: 28 LEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIR 87
LEAWER+YAD+RSWE+LQEDESG L PID A H+QYRRRL RS A ARIQKGLIR
Sbjct: 41 LEAWERAYADERSWESLQEDESGLLHPIDTKALVHSQYRRRLLLRSAAAAAARIQKGLIR 100
Query: 88 YLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTD 147
YLYIVIDLSRAA+EMD+RPSRMAVVAK EAF+REFFDQNPLS +GLVT+KDG+A+ LT+
Sbjct: 101 YLYIVIDLSRAASEMDYRPSRMAVVAKHAEAFIREFFDQNPLSHVGLVTIKDGIAHRLTE 160
Query: 148 LGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 207
+GGSPES IKALMGKL CSGDSSLQNAL+LV G L Q+PSYGH+EVLILYSAL+T DPGD
Sbjct: 161 IGGSPESQIKALMGKLECSGDSSLQNALELVHGYLDQVPSYGHKEVLILYSALNTFDPGD 220
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 267
IMETI KCK+SKIRCSVIGL+AE+FICKHLC++TGGSY+VALDESHFKEL++EHAPPPPA
Sbjct: 221 IMETITKCKKSKIRCSVIGLAAEIFICKHLCEETGGSYTVALDESHFKELLLEHAPPPPA 280
Query: 268 IAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGV-GYTCPRCKARVCELPTDCRICGL 326
IAE+A ANLIKMGFPQR E ISICSCHK++K G GY CPRCK VCELPT+CR CGL
Sbjct: 281 IAEYAAANLIKMGFPQRGAEDLISICSCHKKIKSGAEGYICPRCKVNVCELPTECRTCGL 340
Query: 327 QLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVAC 386
LVSSPHLARSYHHLFP+APFDEVTP + + R CF CQQSL + + L+V C
Sbjct: 341 TLVSSPHLARSYHHLFPVAPFDEVTP--VPNRIQRGGQICFSCQQSLFNPDGQSNLHVRC 398
Query: 387 PKCKKHFCLECDIYIHESLHNCPGCESLRH 416
PKC +HFCL+CDIYIHESLHNCPGCES R+
Sbjct: 399 PKCNQHFCLDCDIYIHESLHNCPGCESQRN 428
>gi|226531944|ref|NP_001142175.1| uncharacterized protein LOC100274342 [Zea mays]
gi|194707472|gb|ACF87820.1| unknown [Zea mays]
gi|414586431|tpg|DAA37002.1| TPA: hypothetical protein ZEAMMB73_625811 [Zea mays]
Length = 428
Score = 600 bits (1548), Expect = e-169, Method: Compositional matrix adjust.
Identities = 295/389 (75%), Positives = 331/389 (85%), Gaps = 3/389 (0%)
Query: 28 LEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIR 87
LEAWER+YAD+RSWE+LQEDESG LRP+D HAQYRRRL RS A ARIQKGLIR
Sbjct: 38 LEAWERAYADERSWESLQEDESGLLRPVDTKTLVHAQYRRRLLLRSAAAAAARIQKGLIR 97
Query: 88 YLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTD 147
YLYIVIDLSRAA+EMD+RPSRMAVVAK EAF+REFFDQNPLS +GLVT+KDG+A+ LT+
Sbjct: 98 YLYIVIDLSRAASEMDYRPSRMAVVAKHAEAFIREFFDQNPLSHVGLVTIKDGIAHRLTE 157
Query: 148 LGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 207
+GGSPES IKALMGKL CSGDSSLQNALDLV G L Q+PSYGH+EVLILYSAL+T DPGD
Sbjct: 158 IGGSPESQIKALMGKLECSGDSSLQNALDLVHGYLDQVPSYGHKEVLILYSALNTFDPGD 217
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 267
I ETI KCK+SKIRCSVIGL+AE+FICKHLC++TGGSY+VALDESHFKEL++EHAPPPPA
Sbjct: 218 ITETIAKCKKSKIRCSVIGLAAEIFICKHLCEETGGSYTVALDESHFKELLLEHAPPPPA 277
Query: 268 IAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGV-GYTCPRCKARVCELPTDCRICGL 326
IAE+A ANLIKMGFPQR E ISICSCHK++K G GY CPRCK VCELPT+CR CGL
Sbjct: 278 IAEYAAANLIKMGFPQRGAEELISICSCHKKIKSGAEGYICPRCKVNVCELPTECRTCGL 337
Query: 327 QLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVAC 386
LVSSPHLARSYHHLFP+ PFDEVTP + + R CF CQQSL + + L+V C
Sbjct: 338 TLVSSPHLARSYHHLFPVPPFDEVTP--VPNRIQRGGQICFSCQQSLYNPDGQSNLHVRC 395
Query: 387 PKCKKHFCLECDIYIHESLHNCPGCESLR 415
PKC +HFCL+CDIYIHESLHNCPGCES R
Sbjct: 396 PKCNQHFCLDCDIYIHESLHNCPGCESQR 424
>gi|255570827|ref|XP_002526366.1| btf, putative [Ricinus communis]
gi|223534325|gb|EEF36037.1| btf, putative [Ricinus communis]
Length = 465
Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust.
Identities = 297/375 (79%), Positives = 337/375 (89%), Gaps = 4/375 (1%)
Query: 1 MTNSERKRLNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAF 60
M++SER+R+NGE EEE+ DEDD GL+AWER+Y D+RSWEALQEDESG LRPIDN A
Sbjct: 1 MSHSERRRMNGEGEEEDGDEDDIDGDGLDAWERTYTDERSWEALQEDESGLLRPIDNKAI 60
Query: 61 YHAQYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFV 120
YHAQYRRR+R ++T+ARIQKGLIR+LYIV+DLSRAA EMD +PSRM V+A+ VEAF+
Sbjct: 61 YHAQYRRRIRS---LSTSARIQKGLIRFLYIVVDLSRAAGEMDIKPSRMVVIARHVEAFI 117
Query: 121 REFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQG 180
REFFDQNPLSQIGLVT+KDGVA+ LT+LGGSPESHIKAL GKL C+GDSSLQNALDLV+G
Sbjct: 118 REFFDQNPLSQIGLVTIKDGVAHPLTELGGSPESHIKALTGKLECAGDSSLQNALDLVRG 177
Query: 181 LLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQD 240
L QIP+YGHREVLILYSALSTCDPGDIMETIQ CK+SKIRCSVIGLSAEMFICKHLCQ+
Sbjct: 178 YLDQIPAYGHREVLILYSALSTCDPGDIMETIQNCKKSKIRCSVIGLSAEMFICKHLCQE 237
Query: 241 TGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVK 300
TGG YSVA+DE+H KEL++EHAPPPPAIAEFAIANLIKMGFPQR+ EGSISICSCHKE K
Sbjct: 238 TGGLYSVAMDETHLKELLLEHAPPPPAIAEFAIANLIKMGFPQRSAEGSISICSCHKEAK 297
Query: 301 VGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRN 360
VG GY CPRCKARVC+LPT+CRICGL LVSSPHLARSYHHLFPIAPFDEV+ ++ ++
Sbjct: 298 VGEGYICPRCKARVCDLPTECRICGLTLVSSPHLARSYHHLFPIAPFDEVSQR-QSELQH 356
Query: 361 RSRSTCFGCQQSLLS 375
R + TCFGCQQSLL+
Sbjct: 357 RPQKTCFGCQQSLLN 371
>gi|32489532|emb|CAE04735.1| OSJNBa0043L24.23 [Oryza sativa Japonica Group]
gi|116310777|emb|CAH67570.1| OSIGBa0101P20.13 [Oryza sativa Indica Group]
Length = 432
Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust.
Identities = 289/392 (73%), Positives = 333/392 (84%), Gaps = 1/392 (0%)
Query: 28 LEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIR 87
LEAWER+YADDRSWEALQEDESG LRPID HAQYRRRL RS + ARIQKGLIR
Sbjct: 41 LEAWERAYADDRSWEALQEDESGLLRPIDTKTLVHAQYRRRLLLRSAASAAARIQKGLIR 100
Query: 88 YLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTD 147
YLYIVIDLSRAA+EMD+RPSRMAVVAK E F+REFFDQNPLS +G+VT+KDG+++ LT+
Sbjct: 101 YLYIVIDLSRAASEMDYRPSRMAVVAKYAEVFIREFFDQNPLSHVGIVTMKDGISHRLTE 160
Query: 148 LGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 207
+GGSPES IKALMGKL CSG+ SLQNAL+LV G L Q+PSYGH+EVL LYSAL+TCDPGD
Sbjct: 161 IGGSPESQIKALMGKLECSGEPSLQNALELVHGYLDQVPSYGHKEVLFLYSALNTCDPGD 220
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 267
IMETI KCK+SKIRCSVIGL+AE+FICK+LC++TGGSY+VALDESHFKEL++EHAPPPPA
Sbjct: 221 IMETIAKCKKSKIRCSVIGLAAEIFICKYLCEETGGSYTVALDESHFKELLLEHAPPPPA 280
Query: 268 IAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGV-GYTCPRCKARVCELPTDCRICGL 326
IAE+A ANLIKMGFPQR E ISICSCHK++K G GY CPRCK VCELPT+CR CGL
Sbjct: 281 IAEYAAANLIKMGFPQRGAEDLISICSCHKKIKSGAEGYICPRCKVNVCELPTECRTCGL 340
Query: 327 QLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVAC 386
LVSSPHLARSYHHLFP+ PFDEV+ + N + C+GCQQS ++ ++ L+V C
Sbjct: 341 TLVSSPHLARSYHHLFPVQPFDEVSSVHPNRLGQKGGQKCYGCQQSFINPDSQSSLHVRC 400
Query: 387 PKCKKHFCLECDIYIHESLHNCPGCESLRHSN 418
PKC +HFCL+CDIYIHESLHNCPGCES R S+
Sbjct: 401 PKCNQHFCLDCDIYIHESLHNCPGCESQRSSS 432
>gi|449525401|ref|XP_004169706.1| PREDICTED: general transcription factor IIH subunit 2-like, partial
[Cucumis sativus]
Length = 329
Score = 549 bits (1415), Expect = e-154, Method: Compositional matrix adjust.
Identities = 258/329 (78%), Positives = 292/329 (88%), Gaps = 2/329 (0%)
Query: 98 AAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIK 157
AA EMDFRPSRMAVVAK V+AFVREFFDQNPLSQIGLVT+KDG ANCLTDLGGSPESH+K
Sbjct: 1 AATEMDFRPSRMAVVAKHVDAFVREFFDQNPLSQIGLVTIKDGFANCLTDLGGSPESHVK 60
Query: 158 ALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKE 217
ALMGKL CSGD+SLQN L+LV L+QIPSYGHREVL+LYSAL++CDPGDIMET+QKCK
Sbjct: 61 ALMGKLECSGDASLQNGLELVHSYLNQIPSYGHREVLVLYSALNSCDPGDIMETVQKCKT 120
Query: 218 SKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLI 277
SKIRCSVIGL+AE+FIC+HLCQ+TGGSYSVALDESHFKEL++EHAPPPPAIA+ A+ NLI
Sbjct: 121 SKIRCSVIGLTAEIFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPAIADSAMPNLI 180
Query: 278 KMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARS 337
KMGFPQRA E SI+ICSCHKE KVG GYTCPRCKARVCELPT+CRICGL L+SSPHLARS
Sbjct: 181 KMGFPQRAAESSIAICSCHKEAKVGGGYTCPRCKARVCELPTECRICGLTLISSPHLARS 240
Query: 338 YHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLL--SSGNKPGLYVACPKCKKHFCL 395
YHHLFPI PFDEV+ +DPR++ CFGCQ+SL+ S+GN P + V+CPKCK+HFCL
Sbjct: 241 YHHLFPIIPFDEVSDKVFHDPRHQLPKVCFGCQESLMNPSTGNSPSIRVSCPKCKQHFCL 300
Query: 396 ECDIYIHESLHNCPGCESLRHSNPIVANE 424
+CDIYIHESLHNCPGCES R ++E
Sbjct: 301 DCDIYIHESLHNCPGCESFRRPKLATSDE 329
>gi|168025049|ref|XP_001765047.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683634|gb|EDQ70042.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 394
Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust.
Identities = 244/385 (63%), Positives = 307/385 (79%), Gaps = 7/385 (1%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYL 89
A+ER YAD+RSWE LQEDESG LR +D AQ +R+ R R RIQ+G+IRYL
Sbjct: 6 AFERQYADERSWEELQEDESGMLR-VDV-----AQQQRQHRKRMSAMAGPRIQRGIIRYL 59
Query: 90 YIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
++++D SRAAAEMD RPSRM +V VEAFVREFFDQNPLS +G++ +KDG+A+ LTDL
Sbjct: 60 FVLLDFSRAAAEMDLRPSRMGIVVDCVEAFVREFFDQNPLSHLGVILLKDGIAHQLTDLS 119
Query: 150 GSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIM 209
GSPE+HI+AL + +GD+S+QN LDL +G L+QIPSYGHREVL++YSALST DPGD+M
Sbjct: 120 GSPETHIRALRSNMESTGDASIQNGLDLARGYLTQIPSYGHREVLLVYSALSTIDPGDVM 179
Query: 210 ETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIA 269
ET+Q+CK++ IRCSV+GLSAE++ICK LC+ TGG YSVA +E H KELIMEHAPPP A A
Sbjct: 180 ETVQECKKANIRCSVVGLSAEIYICKLLCEQTGGMYSVATNEGHLKELIMEHAPPPAAQA 239
Query: 270 EFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLV 329
E ++A+L++MGFPQR E ++++C+CH+EVK+G GYTCPRCKARVCELPT C ICGL LV
Sbjct: 240 EMSVASLVRMGFPQRGAEDAVALCACHREVKMGGGYTCPRCKARVCELPTQCHICGLTLV 299
Query: 330 SSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNK-PGLYVACPK 388
SSPHLARSYHHLFP++PF+EV L + R +C+GC Q L + G K G+ + CP+
Sbjct: 300 SSPHLARSYHHLFPVSPFEEVENLASANGRQSLSKSCYGCLQELPTPGGKVKGVRLECPR 359
Query: 389 CKKHFCLECDIYIHESLHNCPGCES 413
C++HFC +CD YIHESLHNCPGCES
Sbjct: 360 CRQHFCFDCDNYIHESLHNCPGCES 384
>gi|302791231|ref|XP_002977382.1| hypothetical protein SELMODRAFT_232956 [Selaginella moellendorffii]
gi|300154752|gb|EFJ21386.1| hypothetical protein SELMODRAFT_232956 [Selaginella moellendorffii]
Length = 394
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 233/404 (57%), Positives = 315/404 (77%), Gaps = 20/404 (4%)
Query: 16 EEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLV 75
EEED+ ++ EAWER+YADDRSWE+L EDESG L+ D+ RR ++
Sbjct: 2 EEEDKAPDM----EAWERAYADDRSWESLIEDESGLLKAGDDVQQQRQHRRRLIQ----- 52
Query: 76 ATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLV 135
A+ RIQ+G+IRYL +++D SRAA E+DFRPSRMAVVAK VE FVRE+FDQNPLSQ+G++
Sbjct: 53 ASGPRIQRGIIRYLCLILDFSRAAGEIDFRPSRMAVVAKAVEDFVREYFDQNPLSQLGII 112
Query: 136 TVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLI 195
+K+G+A+ +T+L GSPE+HI+AL L G++SLQN L+L + IPSYGHREV+I
Sbjct: 113 VMKNGIASVVTELSGSPEAHIRALKSNLESFGEASLQNGLELAHTYVQHIPSYGHREVVI 172
Query: 196 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFK 255
++SALSTCDPG+I+ET++KCK ++++CSV+GL+AE++ICKH+ Q+TGGSY+VA++E H K
Sbjct: 173 VFSALSTCDPGNILETVKKCKAARMKCSVVGLTAEIYICKHISQETGGSYAVAMNEGHLK 232
Query: 256 ELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVC 315
E+++EH PPP A+ + + A+L++MGFPQR EG+++IC+CHKE+K+G GY CPRC+ARVC
Sbjct: 233 EILLEHVPPPAAMPDASSASLVRMGFPQRGSEGAVAICACHKELKIGGGYICPRCRARVC 292
Query: 316 ELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRS----TCFGCQQ 371
ELPT+C +CGL LVSS HLARSYHHLFPI FDE+ L D R +S +CFGC+
Sbjct: 293 ELPTECSLCGLALVSSAHLARSYHHLFPIPTFDEL----LVDASLRGKSSFAGSCFGCRI 348
Query: 372 SLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLR 415
L SG+ L + CP+CK+ FC +CD+YIHESLHNCPGCE+L+
Sbjct: 349 QLSGSGS---LRLRCPRCKRDFCFDCDVYIHESLHNCPGCETLQ 389
>gi|302786380|ref|XP_002974961.1| hypothetical protein SELMODRAFT_232450 [Selaginella moellendorffii]
gi|300157120|gb|EFJ23746.1| hypothetical protein SELMODRAFT_232450 [Selaginella moellendorffii]
Length = 394
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 231/404 (57%), Positives = 314/404 (77%), Gaps = 20/404 (4%)
Query: 16 EEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLV 75
EEED+ ++ EAWER+YADDRSWE+L EDESG L+ D+ RR ++
Sbjct: 2 EEEDKAPDM----EAWERAYADDRSWESLIEDESGLLKAGDDVQQQRQHRRRLIQ----- 52
Query: 76 ATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLV 135
A+ RIQ+G+IRYL +++D SRAA E+DFRPSRMAVVAK VE FVRE+FDQNPLSQ+G++
Sbjct: 53 ASGPRIQRGIIRYLCLILDFSRAAGEIDFRPSRMAVVAKAVEDFVREYFDQNPLSQLGII 112
Query: 136 TVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLI 195
+K+G+A+ +T+L GSPE+HI+AL L G++SLQN L+L + IPSYGHREV+I
Sbjct: 113 VMKNGIASVVTELSGSPEAHIRALKSNLESFGEASLQNGLELAHTYVQHIPSYGHREVVI 172
Query: 196 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFK 255
++SALSTCDPG+I+ET++KCK ++++CSV+GL+AE++ICKH+ Q+TGGSY+VA++E H K
Sbjct: 173 VFSALSTCDPGNILETVKKCKAARMKCSVVGLTAEIYICKHISQETGGSYAVAMNEGHLK 232
Query: 256 ELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVC 315
E+++EH PPP A+ + + A+L++MGFPQR EG+++IC+CHKE+++G GY CPRC+ARVC
Sbjct: 233 EILLEHVPPPAAMPDASSASLVRMGFPQRGSEGAVAICACHKELRIGGGYICPRCRARVC 292
Query: 316 ELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRS----TCFGCQQ 371
ELPT+C +CGL LVSS HLARSYHHLFPI FDE+ L D R +S +CFGC+
Sbjct: 293 ELPTECSLCGLALVSSAHLARSYHHLFPIPTFDEL----LVDASLRGKSSFAGSCFGCRI 348
Query: 372 SLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLR 415
L G+ L + CP+CK+ FC +CD+YIHESLHNCPGCE+L+
Sbjct: 349 QLSGGGS---LRLRCPRCKRDFCFDCDVYIHESLHNCPGCETLQ 389
>gi|218195182|gb|EEC77609.1| hypothetical protein OsI_16588 [Oryza sativa Indica Group]
gi|222629181|gb|EEE61313.1| hypothetical protein OsJ_15417 [Oryza sativa Japonica Group]
Length = 509
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 222/293 (75%), Positives = 254/293 (86%), Gaps = 1/293 (0%)
Query: 28 LEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIR 87
LEAWER+YADDRSWEALQEDESG LRPID HAQYRRRL RS + ARIQKGLIR
Sbjct: 41 LEAWERAYADDRSWEALQEDESGLLRPIDTKTLVHAQYRRRLLLRSAASAAARIQKGLIR 100
Query: 88 YLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTD 147
YLYIVIDLSRAA+EMD+RPSRMAVVAK E F+REFFDQNPLS +G+VT+KDG+++ LT+
Sbjct: 101 YLYIVIDLSRAASEMDYRPSRMAVVAKYAEVFIREFFDQNPLSHVGIVTMKDGISHRLTE 160
Query: 148 LGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 207
+GGSPES IKALMGKL CSG+ SLQNAL+LV G L Q+PSYGH+EVL LYSAL+TCDPGD
Sbjct: 161 IGGSPESQIKALMGKLECSGEPSLQNALELVHGYLDQVPSYGHKEVLFLYSALNTCDPGD 220
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 267
IMETI KCK+SKIRCSVIGL+AE+FICK+LC++TGGSY+VALDESHFKEL++EHAPPPPA
Sbjct: 221 IMETIAKCKKSKIRCSVIGLAAEIFICKYLCEETGGSYTVALDESHFKELLLEHAPPPPA 280
Query: 268 IAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGV-GYTCPRCKARVCELPT 319
IAE+A ANLIKMGFPQR E ISICSCHK++K G GY CPRCK + L +
Sbjct: 281 IAEYAAANLIKMGFPQRGAEDLISICSCHKKIKSGAEGYICPRCKVNIVNLAS 333
>gi|302830270|ref|XP_002946701.1| hypothetical protein VOLCADRAFT_72869 [Volvox carteri f.
nagariensis]
gi|300267745|gb|EFJ51927.1| hypothetical protein VOLCADRAFT_72869 [Volvox carteri f.
nagariensis]
Length = 430
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 192/411 (46%), Positives = 275/411 (66%), Gaps = 24/411 (5%)
Query: 21 DDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTAR 80
++ L EA++R Y ++++W+ LQEDE G L +D +A A+ +R L A +AR
Sbjct: 21 ENELRRQEEAYQRQYENEQTWDQLQEDEFGNLF-VDKTAEQRARRKRLLS----AAQSAR 75
Query: 81 IQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDG 140
I+KG+IRYL +V+D+SRAA D RP+R+A + +F+REFFDQNPLSQ+G+ ++ G
Sbjct: 76 IRKGMIRYLLLVVDMSRAAKAQDLRPNRLACILGLCRSFIREFFDQNPLSQLGIAVMRGG 135
Query: 141 VANCLTDLGGSPESHIKAL-MGKLGC-SGDSSLQNALDLVQGLLSQIPSYGHREVLILYS 198
+ LTDL GSPE+ + L KLG +GD SLQNALDL +L +P YGHRE+L++++
Sbjct: 136 LVEKLTDLSGSPEAQVARLDAAKLGAPAGDVSLQNALDLSVSVLRSLPPYGHRELLVVFA 195
Query: 199 ALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELI 258
AL+TCDPG+++++++ CKE+ IR SV+G++AE+++C+ + +DT GSY VAL+E+H ++L+
Sbjct: 196 ALATCDPGNVLDSVRACKENNIRVSVVGVAAEVYVCRRITEDTRGSYGVALNEAHLEQLL 255
Query: 259 MEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVG-YTCPRCKARVCEL 317
M H PPPA A A A L++MGFPQR+ E + S E ++ G YTCPRCK+RV EL
Sbjct: 256 MAHTTPPPATAAQAKAELVRMGFPQRSTEEASSAVFVGLEARLLSGSYTCPRCKSRVPEL 315
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVT--------------PLCLNDPRNRSR 363
P +C ICGL L+SSPHLARSYHHLFP+ F E + P ++ +
Sbjct: 316 PCECHICGLTLISSPHLARSYHHLFPVPSFHEDSKERASEAAAVLRGQPAMRDEVPTSTG 375
Query: 364 STCFGCQQSLLSSGNKPGLYVA--CPKCKKHFCLECDIYIHESLHNCPGCE 412
CFGC + + G L++ C +CK+ FC ECD Y+HE LHNCPGCE
Sbjct: 376 LYCFGCLREVSQPGAAGQLHLTLRCGQCKQVFCFECDAYVHEQLHNCPGCE 426
>gi|384251056|gb|EIE24534.1| transcription factor TFIIH, 44 kDa subunit, partial [Coccomyxa
subellipsoidea C-169]
Length = 420
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 196/417 (47%), Positives = 271/417 (64%), Gaps = 35/417 (8%)
Query: 29 EAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRY 88
EA++R Y D SWEALQEDE G LRP+D A+ RR L A TA I++G+IRY
Sbjct: 1 EAYQRQYEDYFSWEALQEDEFGRLRPLDFREEQRAKRRRLLS----AAATACIRRGMIRY 56
Query: 89 LYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL 148
L I++DLSRAA+ D RP+R+AV++ ++ F+R+FFD+NPLS +G++ ++DG+A LTD+
Sbjct: 57 LQIIVDLSRAASIGDMRPNRLAVMSGVLQGFIRKFFDENPLSHLGIIVMRDGIAQRLTDM 116
Query: 149 GGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREV---LILYSA------ 199
GSPE+HI L G L SGD+SLQNA+D+ L IP YGHRE ++L A
Sbjct: 117 AGSPEAHISKLQGNLDASGDASLQNAMDMAAESLKSIPPYGHREACPQILLKPAHLLVLV 176
Query: 200 ----LSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFK 255
LSTCDPG++++ ++ K++ IR S++G++AE+ ICK ++TGG+Y VAL+E HF+
Sbjct: 177 LFAALSTCDPGNVLDAVKAAKQNSIRVSIVGVAAEVHICKVFTKETGGTYGVALNEKHFE 236
Query: 256 ELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGV-GYTCPRCKARV 314
+L+ EHAPPPP++A A A+L++MGF R +G K+ K+ G+TCPRCKARV
Sbjct: 237 DLVFEHAPPPPSLATDAAASLVRMGFAHRNQDGVEGTAFIGKDCKLSSGGFTCPRCKARV 296
Query: 315 CELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLL 374
+LP C ICGL L+SSPHLARSYHHLFP+ F E + +C+ C L
Sbjct: 297 VDLPCSCHICGLTLISSPHLARSYHHLFPVKAFTE---------GDSGAVSCYACLADLE 347
Query: 375 SSG------NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLRHSNPIVANEG 425
S + G+ V CP C + FC +CD +IHE+LHNCPGC L + VA +G
Sbjct: 348 PSSLDDDAPGEVGVVVRCPDCCQLFCFDCDAFIHETLHNCPGCLCLVDDD--VAEDG 402
>gi|303285284|ref|XP_003061932.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456343|gb|EEH53644.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 404
Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 193/419 (46%), Positives = 261/419 (62%), Gaps = 30/419 (7%)
Query: 18 EDEDDNLNG-----GLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDR 72
E EDD+L L A+E+ Y + +WE L EDESG LR YR + R
Sbjct: 4 EPEDDDLAAEEQASSLRAFEKHYQSENTWEDLVEDESGMLRVTTGD----KGYREKRRKI 59
Query: 73 SLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQI 132
+L A+ + + KG+IR++Y+V+DLS+A E D RPSR+AV++ + F REFF+QNPLSQ+
Sbjct: 60 ALAASNSHVCKGMIRFVYVVLDLSQAVNEEDMRPSRLAVISSLMYKFFREFFNQNPLSQL 119
Query: 133 GLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHRE 192
GLV ++G+A +T+L G+PE+HI AL L +GD S+QN+L+ V L Q+P YG RE
Sbjct: 120 GLVVTRNGIAERVTELSGNPETHIAALKENLDAAGDMSIQNSLEQVHASLVQLPMYGSRE 179
Query: 193 VLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDES 252
VL + SALSTCDPG++ I K +KIR SV+ ++AEM +C+ + ++TGG + VA +
Sbjct: 180 VLFVVSALSTCDPGNVHTAIAAAKNAKIRVSVVSVAAEMHVCRRMTEETGGIFGVAQSQH 239
Query: 253 HFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKA 312
H +EL+M HAPPPP E +L++MGFPQ+ + S G Y CPRCK+
Sbjct: 240 HLEELLMAHAPPPPLNEESTKPSLVEMGFPQKRPLDKDAFFSGR-----GGDYVCPRCKS 294
Query: 313 RVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQS 372
RV ELP+ C +C L LVSS HLARSYHHLFP+ PF E L D + ++CF C
Sbjct: 295 RVEELPSQCTVCKLTLVSSAHLARSYHHLFPVPPFTEGFGL---DDEGKRHTSCFACYVD 351
Query: 373 L------LSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLRHSNPIVANEG 425
S+ N P + CPKCKK FC CD+YIHE LHNCPGCE ++ +A EG
Sbjct: 352 FEEGNESTSNENAPSV---CPKCKKTFCFVCDVYIHEKLHNCPGCELVK----FLAEEG 403
>gi|159490896|ref|XP_001703409.1| transcription factor TFIIH, 44 kDa subunit [Chlamydomonas
reinhardtii]
gi|158280333|gb|EDP06091.1| transcription factor TFIIH, 44 kDa subunit [Chlamydomonas
reinhardtii]
Length = 413
Score = 365 bits (936), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 193/391 (49%), Positives = 280/391 (71%), Gaps = 15/391 (3%)
Query: 29 EAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRY 88
EA++R Y ++++W+ LQEDE G L +D +A A+ +R L A +ARI+KG+IRY
Sbjct: 30 EAYQRQYENEQTWDQLQEDEHGNLF-VDKTAEQRARRQRLLS----AAQSARIRKGMIRY 84
Query: 89 LYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL 148
+ +V+DLSRAA+ D RP+R+ + +FVREFFDQNPLSQ+G+ ++ G+ LTDL
Sbjct: 85 VLLVVDLSRAASAQDLRPNRLGCMLSLCRSFVREFFDQNPLSQLGIAVMRGGLVEKLTDL 144
Query: 149 GGSPESHIKAL-MGKLGC-SGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPG 206
GSPE+ + L GKLG +GD+SLQNAL+L LL Q+P YGHRE+L+L++AL++CDPG
Sbjct: 145 SGSPEAQVARLDAGKLGAPAGDASLQNALELGVSLLKQLPPYGHRELLLLFAALASCDPG 204
Query: 207 DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPP 266
+++++++ CK++ IR SV+G++AE+++C+ + +DTGG+Y VAL+E H ++L+M H+PPPP
Sbjct: 205 NVLDSVKACKDNNIRVSVVGVAAEVYVCRRITEDTGGTYGVALNEGHLEQLLMAHSPPPP 264
Query: 267 AIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVG-YTCPRCKARVCELPTDCRICG 325
A A A A L++MGFPQR+ E + S +E ++ G YTCPRC++RV ELP +C CG
Sbjct: 265 ATAAQAKAELVRMGFPQRSTEEASSAVFVGQEARLLPGSYTCPRCRSRVPELPVECHTCG 324
Query: 326 LQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVA 385
L L+SSPHLARSYHHLFP+ P+ E + + + + CFGC + + G K L++
Sbjct: 325 LTLISSPHLARSYHHLFPVQPYHEDSEVMTT-----TGAYCFGCLREVSEPGVKGQLHLT 379
Query: 386 --CPKCKKHFCLECDIYIHESLHNCPGCESL 414
C +CK+ FC ECD Y+HESLHNCPGCE L
Sbjct: 380 LRCGQCKQVFCFECDAYVHESLHNCPGCEFL 410
>gi|281212115|gb|EFA86276.1| TFIIH subunit [Polysphondylium pallidum PN500]
Length = 438
Score = 363 bits (933), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 181/422 (42%), Positives = 260/422 (61%), Gaps = 30/422 (7%)
Query: 1 MTNSERKRLNGEAEEEEEDEDDNLNGGLE---------AWERSYADDRSWEALQEDESGF 51
M R+R N + + DED + + L+ WE + +R+W+ ++EDESG
Sbjct: 8 MMIGRRRRGNNKDDGYNLDEDQDPDHVLQLNDQGTNKYKWESQF--ERTWDDIEEDESG- 64
Query: 52 LRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAV 111
LRP Q R +R R R+++G+ R++ +++DLS+ A D +PSR
Sbjct: 65 LRP-------SLQEERIMRTRRQRIDAQRVRRGMQRHICLIVDLSKTLASQDMKPSRHQC 117
Query: 112 VAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSL 171
+ E+F++EFFDQNP+SQI L+ K+ A LT+L G+P HI AL GD S+
Sbjct: 118 LLNSSESFIKEFFDQNPISQISLIVTKNSKAEKLTELNGNPNRHITALKNTSAMEGDPSI 177
Query: 172 QNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEM 231
QN+L++ LS +P YG RE++++YS+L+TCDPGD+ +TI+ K +IR S I ++AE+
Sbjct: 178 QNSLEVAISTLSHVPKYGSREIIVIYSSLTTCDPGDLTKTIEILKNEQIRVSFIHMAAEL 237
Query: 232 FICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSIS 291
FICKH+ + T G+ V L+E HF E +M H PPP + A L++MGFPQ+
Sbjct: 238 FICKHISEQTHGTMKVVLNEEHFNECLMLHCQPPPTFGKTEAA-LVEMGFPQQHTSSIPM 296
Query: 292 ICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVT 351
+C CH++++ VGYTCPRC ++ CELPTDC+IC L LVSSPHLARSYHHLF + F E+
Sbjct: 297 MCMCHEQLRY-VGYTCPRCSSKFCELPTDCQICNLSLVSSPHLARSYHHLFQVPLFTEI- 354
Query: 352 PLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
N ++ +CFGC L+ L+ CP+CK+ FC ECD +IHESLHNCPGC
Sbjct: 355 ----NWRELKTEISCFGC----LTVPKSSSLFFGCPRCKQSFCFECDQFIHESLHNCPGC 406
Query: 412 ES 413
E+
Sbjct: 407 EN 408
>gi|255073175|ref|XP_002500262.1| predicted protein [Micromonas sp. RCC299]
gi|226515524|gb|ACO61520.1| predicted protein [Micromonas sp. RCC299]
Length = 427
Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 186/426 (43%), Positives = 259/426 (60%), Gaps = 43/426 (10%)
Query: 18 EDEDDNLNGGLEAWERSYA-DDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVA 76
E +D++L +A A +R+WE L+EDE+G LR QYR + R ++ A
Sbjct: 3 EPDDEDLAAEEQAASLKVACPERTWEDLEEDETGRLRITHGDK----QYREKRRKIAMAA 58
Query: 77 TTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVT 136
+ + KG+IR+LY+V+DLS+A E D RPSR+AVV+ + F RE+F+QNPLSQ+GLV
Sbjct: 59 ANSHVCKGMIRFLYVVVDLSQAVNEADMRPSRLAVVSGILYKFFREYFNQNPLSQLGLVV 118
Query: 137 VKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLIL 196
++G+A LT+L GSPESHI AL L +GD S+QN+L+ VQ L+Q+P+YG REVL +
Sbjct: 119 TRNGIAERLTELSGSPESHITALKENLEAAGDMSIQNSLEQVQSSLAQLPTYGTREVLFV 178
Query: 197 YSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKE 256
SALS+CDPG++ I K + IR SV+ ++AE+ IC+ + ++TGG + V+ + H ++
Sbjct: 179 VSALSSCDPGNVHTAIAAAKSANIRVSVVSVAAELHICRRMTEETGGMFGVSQSQHHLED 238
Query: 257 LIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARV-- 314
L+M HAPPPP + A+L++MGFPQ+ + S G Y CPRC +RV
Sbjct: 239 LLMAHAPPPPLNEQATKASLVEMGFPQKRPLDKGAFFSGR-----GGEYVCPRCASRVEV 293
Query: 315 --------------------CELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLC 354
ELP C +C L LVSSPHLARSYHHLFP+APF+ P+
Sbjct: 294 NPTHPKFVENIKINNPVTFLQELPAQCSVCSLTLVSSPHLARSYHHLFPVAPFEVHRPVI 353
Query: 355 ---LNDPRNRSRSTCFGCQQSLLSSGNK-----PGLYVACPKCKKHFCLECDIYIHESLH 406
LND + CF C SG + P + CP+CKK +C +CD++IHE LH
Sbjct: 354 MQELNDAAKLDATNCFACNLKFDRSGARGNDDAPSV---CPRCKKIYCFQCDVFIHEKLH 410
Query: 407 NCPGCE 412
NCPGCE
Sbjct: 411 NCPGCE 416
>gi|384487455|gb|EIE79635.1| hypothetical protein RO3G_04340 [Rhizopus delemar RA 99-880]
Length = 395
Score = 350 bits (899), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 183/389 (47%), Positives = 250/389 (64%), Gaps = 22/389 (5%)
Query: 18 EDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVAT 77
E +DD GG AWE Y RSW+ LQED G L + + + RR L+D
Sbjct: 20 EHQDDTNTGGY-AWEEEYK--RSWDVLQEDAEGNLSSVVSQLQQQRKRRRLLKD------ 70
Query: 78 TARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTV 137
T IQ+G+IR+++I+IDLS A E D RPSR+ + + FV EFFDQNP+SQ+G++
Sbjct: 71 TDVIQRGIIRHVFIIIDLSEAMNEKDLRPSRIELTLTYAQQFVVEFFDQNPISQLGIIIT 130
Query: 138 KDGVANCLTDLGGSPESHIKALMGKLG--CSGDSSLQNALDLVQGLLSQIPSYGHREVLI 195
+DG+A LT+L G+P HIKAL K SG+ SLQNAL L + + +PS+G +EVL+
Sbjct: 131 RDGIAEKLTELSGNPTDHIKALKSKKNTETSGEPSLQNALQLARASMLGVPSHGSKEVLL 190
Query: 196 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFK 255
++ +L+TCDP DI +TI ++ +R +V+GL+AE+ IC+ L +Y V L+E+HFK
Sbjct: 191 IFGSLTTCDPSDIHDTIDLLRKELVRVNVVGLAAEVQICRAL-----RTYGVVLNEAHFK 245
Query: 256 ELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVC 315
+L+ E PPP + +NLIKMGFP+R E + + C CH ++ +G GY CPRCK++VC
Sbjct: 246 DLLFEVVPPPAVMQNKNTSNLIKMGFPKRLVEDNATFCVCHSKLTMG-GYICPRCKSKVC 304
Query: 316 ELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLS 375
ELP+DC ICGL LVSSPHLARSYHHLFP+ FDEV + + + CF C L
Sbjct: 305 ELPSDCDICGLTLVSSPHLARSYHHLFPVDNFDEV-----KNNISGYATHCFSCLSQLDK 359
Query: 376 SGNKPGLYVACPKCKKHFCLECDIYIHES 404
S G +CPKCK+ FC ECDI++HES
Sbjct: 360 SEVVGGNRFSCPKCKQEFCAECDIFVHES 388
>gi|330804328|ref|XP_003290148.1| TFIIH subunit [Dictyostelium purpureum]
gi|325079746|gb|EGC33332.1| TFIIH subunit [Dictyostelium purpureum]
Length = 423
Score = 350 bits (899), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 177/412 (42%), Positives = 256/412 (62%), Gaps = 22/412 (5%)
Query: 7 KRLNGEAEEEEEDEDDNLNGGLE------AWERSYADDRSWEALQEDESGFLRPIDNSAF 60
KR+N +EE+ L G E WE+ ++SW ++EDE G ++
Sbjct: 13 KRINKSLFDEEDGPVHVLQVGDEDGKSKYKWEKEL--EKSWLDIREDEHGLRVSVEKE-- 68
Query: 61 YHAQYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFV 120
+ RRL+ ++ R+++G+ R+L +V+DLS+ A D +PSR V+ + E F+
Sbjct: 69 -RSNRNRRLKSTNI--DIQRVRRGMQRHLCLVLDLSKTLANQDLKPSRYQVLIQNTEQFI 125
Query: 121 REFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQG 180
+EFFDQNP+SQ+ ++ K+ A +++L G+P+ HI+A+ + G+ S+QN+LD+
Sbjct: 126 KEFFDQNPISQLSIIITKNSKAEKISELSGNPQRHIQAMKDAIAMEGEPSIQNSLDVAIS 185
Query: 181 LLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQD 240
L +P YG REVL L+S+L+TCDP D+ +TIQ K+ IR S I L+AE++IC+H+ +
Sbjct: 186 SLCYVPKYGSREVLFLFSSLTTCDPTDLAKTIQTLKQENIRVSFIHLAAELYICRHIAEQ 245
Query: 241 TGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVK 300
T G+ V L+E HF E + PPP I + A L++MGFPQ+ S C CH+++K
Sbjct: 246 TNGTSKVILNEEHFLENLYSKCQPPPTIGKVEAA-LVEMGFPQQITSSVPSTCICHEKMK 304
Query: 301 VGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRN 360
GY CPRC + CELPTDC+IC L LVSSPHLARSYHHLFPI F+EV LN
Sbjct: 305 YS-GYICPRCGVKSCELPTDCQICNLSLVSSPHLARSYHHLFPIPLFEEVNWKELN---- 359
Query: 361 RSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCE 412
+ TC+ C S S + L+ +CP+C + FCLECD+YIHE+LHNCPGCE
Sbjct: 360 -TNVTCYSCLTS--SETSILSLFFSCPRCDQVFCLECDMYIHEALHNCPGCE 408
>gi|260815126|ref|XP_002602325.1| hypothetical protein BRAFLDRAFT_282199 [Branchiostoma floridae]
gi|229287633|gb|EEN58337.1| hypothetical protein BRAFLDRAFT_282199 [Branchiostoma floridae]
Length = 396
Score = 345 bits (884), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 173/396 (43%), Positives = 260/396 (65%), Gaps = 28/396 (7%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +++WE LQED +G L+ + + A+ RRRL+DR + ++ G++R+L+
Sbjct: 12 WEGDY--EKTWEVLQEDAAGSLQASVDDIIHRAK-RRRLQDRQV-----NVRLGMMRHLF 63
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D+S++ + D +P+R+ V K +E F+ E+FDQNP+SQ+G++T K+ A LT+LGG
Sbjct: 64 VVVDMSQSMEDQDLKPTRILVTLKLLENFIEEYFDQNPISQLGVITTKNKRAEKLTELGG 123
Query: 151 SPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P+ H+ L + C G+ S+ N+LDL L +P++ REVLI+ +L+TCDPGDI
Sbjct: 124 NPKRHVTQLRTLSSASCVGEPSIMNSLDLAAQTLKHMPTHTSREVLIIMGSLTTCDPGDI 183
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
T++ K+ IRCSVIGL+AE+ +CK LC T G+Y + L+++HFK+L++EH PPPA
Sbjct: 184 NITMKMVKDLNIRCSVIGLAAEVQVCKKLCNMTNGTYGIILEDTHFKDLLLEHCTPPPAT 243
Query: 269 AEFAIANLIKMGFPQRA---GEGSI--SICSCHKEVKVG----VGYTCPRCKARVCELPT 319
++LIKMGFPQ S+ S+C CH++ + GY CP+C A+ CELP
Sbjct: 244 VN-TDSSLIKMGFPQHTISQDHDSVKPSMCMCHQDTEAQSFTPSGYFCPQCHAKYCELPV 302
Query: 320 DCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNK 379
+C+ICGL LVS+PHLARSYHH FP+ F E+ L+ +R C GCQ L N
Sbjct: 303 ECKICGLTLVSAPHLARSYHHFFPLENFREIPLEELDAELSR---FCTGCQVQL----NG 355
Query: 380 PGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLR 415
P +Y C +C + FC++CD++IHE+LH+CPGC + R
Sbjct: 356 PVVY-CCTRCSRPFCIDCDLFIHETLHSCPGCINKR 390
>gi|66823583|ref|XP_645146.1| TFIIH subunit [Dictyostelium discoideum AX4]
gi|74861629|sp|Q86KZ2.2|TF2H2_DICDI RecName: Full=General transcription factor IIH subunit 2; AltName:
Full=TFIIH basal transcription factor complex subunit 2
gi|60473387|gb|EAL71333.1| TFIIH subunit [Dictyostelium discoideum AX4]
Length = 461
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 175/423 (41%), Positives = 259/423 (61%), Gaps = 27/423 (6%)
Query: 2 TNSERKRLN--------GEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLR 53
N++ KR N G A + +++D N WE + +++W + EDE G LR
Sbjct: 8 NNAQNKRTNRSLYDDEDGPAHVLQTNDEDGTNKY--KWENRF--EKTWLTIDEDEHG-LR 62
Query: 54 PIDNSAFYHAQYRRRLRDRS-LVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVV 112
P + R + +DR +++ R+++G+ R+L +++DLS+ + D +PSR V+
Sbjct: 63 PSNQEERNTRNRRLKNKDRDGILSQDQRVRRGMQRHLCLILDLSKTLSNQDLKPSRYQVL 122
Query: 113 AKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQ 172
+ VE F++EFFDQNP+SQ+ ++ K+ A +++L G+ HI+A+ + G+ S+Q
Sbjct: 123 LQNVELFIKEFFDQNPISQLSIIITKNSKAEKISELSGNRLRHIQAMKDAIAMEGEPSIQ 182
Query: 173 NALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMF 232
N+L++ L +P YG REVL ++S+L+TCDP + +TIQ K IR S I ++AE++
Sbjct: 183 NSLEVALSSLCYVPKYGSREVLFIFSSLTTCDPSSLQKTIQSLKNESIRVSFIHMAAELY 242
Query: 233 ICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISI 292
ICK + + T G+ V L+E HF E +M PPP I + A L++MGFPQ+ S
Sbjct: 243 ICKAIAEQTNGTSKVILNEEHFNESLMLKCQPPPTIGKTEAA-LVEMGFPQQITSTVPSP 301
Query: 293 CSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTP 352
C CH+++K GY CPRC + CELPTDC+IC L LVSSPHLARSYHHLF I F+EV
Sbjct: 302 CICHEKMKYS-GYICPRCGVKSCELPTDCQICNLSLVSSPHLARSYHHLFQIPLFNEVNW 360
Query: 353 LCLNDPRNRSRSTCFGCQQSLLSSGNKP--GLYVACPKCKKHFCLECDIYIHESLHNCPG 410
LN TC GC LSS K L+ +CP+C++ FCL+CD++IHESLHNCPG
Sbjct: 361 KELN-----KNVTCIGC----LSSSEKSILSLFFSCPRCQEIFCLDCDLFIHESLHNCPG 411
Query: 411 CES 413
CE+
Sbjct: 412 CEN 414
>gi|443732857|gb|ELU17421.1| hypothetical protein CAPTEDRAFT_178402 [Capitella teleta]
Length = 390
Score = 338 bits (867), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 172/394 (43%), Positives = 255/394 (64%), Gaps = 25/394 (6%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYL 89
WE Y +R+WEAL+ED+ G L+ + + A+ R + ++ G++R+L
Sbjct: 8 TWETEY--ERTWEALKEDDDGSLQAAVDDVIHRAKRR------RALLRDPNVRLGMMRHL 59
Query: 90 YIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
+IV+DLS + + D RP+R+ K +E FV EFFDQNP+SQ+G++T + A+ LT+LG
Sbjct: 60 FIVVDLSTSMEDQDLRPNRLFASLKLLEKFVEEFFDQNPISQLGILTTSNKRADKLTELG 119
Query: 150 GSPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 207
G+P+ HI+AL G + C G+ SLQNALDL L +P + REVLI++ +L+TCDPG
Sbjct: 120 GNPKRHIQALRGLKERACIGEPSLQNALDLAAQTLKHMPGHSSREVLIVFGSLTTCDPGS 179
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 267
I++TIQ K + ++ S+IGL+A++ IC+ +C DT G Y V +DE HFKEL+ + PP A
Sbjct: 180 IIDTIQSMKANNVQVSIIGLAADVRICRKICHDTQGQYHVIVDEPHFKELLNQQVTPPNA 239
Query: 268 IAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGV-----GYTCPRCKARVCELPTDCR 322
+ ++LI+MGFP+ S+C+CH E GY CP+C+++ CELP +CR
Sbjct: 240 TSSTE-SSLIRMGFPRHEQGQQPSMCNCHLESSSSEGFSTGGYFCPQCRSKYCELPVECR 298
Query: 323 ICGLQLVSSPHLARSYHHLFPIAPFDEV-TPLCLNDPRNRSRSTCFGCQQSLLSSGNKPG 381
CGL LVS+PHLARSYHHLF + PF+EV T + + ++ + C+ CQ L N P
Sbjct: 299 ACGLTLVSAPHLARSYHHLFLLEPFNEVRTEVAI---FHKEKRICYSCQSQL----NDPM 351
Query: 382 LYVACPKCKKHFCLECDIYIHESLHNCPGCESLR 415
Y C KC++ FC++CD+++HE+LH+CPGC S R
Sbjct: 352 SY-QCSKCRQVFCVDCDLFVHETLHSCPGCSSSR 384
>gi|405976292|gb|EKC40804.1| General transcription factor IIH subunit 2 [Crassostrea gigas]
Length = 399
Score = 338 bits (866), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 168/399 (42%), Positives = 252/399 (63%), Gaps = 30/399 (7%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WEA+QEDE G L+ + A+ R+ L+ ++ G++R+L+
Sbjct: 11 WETEY--ERTWEAIQEDEKGSLQASVDDIISKAKKRK------LLEKIKNVRLGMMRHLF 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
++ID+S A ++ D +P+R+ K +E FV E+FDQNP+SQ+G++ K+ A +++LGG
Sbjct: 63 LIIDMSEAMSDQDLKPTRLLSTLKLLEYFVEEYFDQNPISQLGIIITKNKRAEKVSELGG 122
Query: 151 SPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P HI L + C G+ SLQN+L+L L +P + REVL++ +L+TCDP +I
Sbjct: 123 NPRRHITTLQSLADKVCHGEPSLQNSLELAHQTLRHMPGHASREVLVVMGSLTTCDPDNI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
+ TI ++ +RCSVIGL+AE+ +CK LC++T GSYSV LDE HFK+L+ +H PPPA
Sbjct: 183 ISTISMLRDGNVRCSVIGLAAEVCVCKKLCKETHGSYSVILDECHFKDLLTQHVTPPPAT 242
Query: 269 AEFAIANLIKMGFPQRA----GEGSISICSCHKEVK-----VGVGYTCPRCKARVCELPT 319
A ++LI+MGFP E S+C CH + K GY CP+CK++ CELP
Sbjct: 243 ASTE-SSLIRMGFPHHQLSADKEERPSMCMCHLDSKNSQGFSSTGYFCPQCKSKYCELPI 301
Query: 320 DCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNK 379
+C+ CGL LVS+PHLARSYHHLFP+ F E+ + S CF CQ ++ +
Sbjct: 302 ECKACGLTLVSAPHLARSYHHLFPLDQFREIP-----TAQVGSNVLCFSCQTAV----QE 352
Query: 380 PGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLRHSN 418
+Y+ C C++ +CL+CD++IHE+LH+CPGC S R +
Sbjct: 353 LNVYI-CDNCERIYCLDCDLFIHETLHSCPGCASSRQTQ 390
>gi|328874281|gb|EGG22647.1| TFIIH subunit [Dictyostelium fasciculatum]
Length = 457
Score = 338 bits (866), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 175/409 (42%), Positives = 246/409 (60%), Gaps = 29/409 (7%)
Query: 12 EAEEEEEDEDDNLNGGLEA-----WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYR 66
+AE+ + D D L + WE + RSWE ++EDE G LRP Q
Sbjct: 22 DAEDGQGDTDHVLQTNDQGTQKYKWEEKFV--RSWETIEEDEKG-LRP-------SLQED 71
Query: 67 RRLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQ 126
R R R + R+++G+ R++ +VIDLS++ D +P+R V E F++EFFDQ
Sbjct: 72 RDTRTRRQLKDDQRVRRGMQRHVCLVIDLSKSLEIHDLKPNRHQAVLIAAENFIKEFFDQ 131
Query: 127 NPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL-MGKLGCSGDSSLQNALDLVQGLLSQI 185
NP+SQ+ L+ K+ A ++DL +P HI+ L M GD S+QN+LD+ LS +
Sbjct: 132 NPISQLSLIITKNSKAEKISDLSSNPNRHIQLLKMVSSTIEGDPSIQNSLDVSIATLSYV 191
Query: 186 PSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSY 245
P YG REV+ +YS+L+TCDPGD+ +TI K IR S + L+AE+++C+H+ T G+
Sbjct: 192 PKYGSREVIFIYSSLTTCDPGDLSKTITTLKNENIRVSFVHLAAELYVCRHISDATNGTM 251
Query: 246 SVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGY 305
V E H E ++ H PPP I + A L++MGFPQ+ + +C CH++ K VGY
Sbjct: 252 KVIETEHHLNEALILHCQPPPTIGKVEAA-LVEMGFPQQHTSQTPMMCVCHEQFKY-VGY 309
Query: 306 TCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRST 365
TCPRC+++ CELPTDC+ICGL LVSSPHLARSYHHLF + F EV P + +
Sbjct: 310 TCPRCQSKFCELPTDCQICGLSLVSSPHLARSYHHLFQVPIFREVNPKSI-----QPNLK 364
Query: 366 CFGCQQSLLSSGNKPG-LYVACPKCKKHFCLECDIYIHESLHNCPGCES 413
C+GC + KP L CP+CKK FC +CD +HES+HNCPGCE+
Sbjct: 365 CYGCLLPI-----KPNYLNYGCPRCKKIFCFDCDQVVHESIHNCPGCEN 408
>gi|307198378|gb|EFN79320.1| General transcription factor IIH subunit 2 [Harpegnathos saltator]
Length = 400
Score = 338 bits (866), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 171/396 (43%), Positives = 247/396 (62%), Gaps = 32/396 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +++WEA++ED+ G L P A+ +R+L + AR+ G++R+LY
Sbjct: 12 WETGY--EKTWEAIKEDDHGLLEPSVADIILSAKRKRQLERKQ----GARL--GMMRHLY 63
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
I++D S + + D +P+R K +E F+ EFF QNP+SQ+G++T ++ A ++DL G
Sbjct: 64 IILDASESMSNQDLKPTRFLCSLKLLENFIEEFFYQNPISQLGVITTRNKRAEKISDLAG 123
Query: 151 SPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+ + HIK L + + +G+ SLQN+L+L L +PS+ +E+LI+ AL+TCDPGDI
Sbjct: 124 NSKKHIKELQSLQQTMVTGEPSLQNSLELALKSLRLLPSHASKEILIIIGALTTCDPGDI 183
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
ETIQ K IRCSVIGL+AE++ICK + TGG + VALD+ H+KE + H PPPA
Sbjct: 184 NETIQNMKSDGIRCSVIGLAAELYICKRMANATGGEHGVALDDKHYKEQLNSHIDPPPAA 243
Query: 269 AEFAIANLIKMGFPQRAGEGSI-----SICSCHKEVK------VGVGYTCPRCKARVCEL 317
A L+KMGFP A ++ ++C CH E + GY CP+C ++ CEL
Sbjct: 244 TRLDAA-LVKMGFPHHALHSTVTDTPMTVCMCHAESSDELFKLMSTGYLCPQCLSKHCEL 302
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P +CR CGL LVS+PHLARSYH+LFP+A F E+ + S+CFGCQ+
Sbjct: 303 PVECRSCGLTLVSAPHLARSYHYLFPVATFTEIE-------FENNHSSCFGCQKVFTQKD 355
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 413
K +Y+ C KC + FCL+C+I+IHESLH CPGC +
Sbjct: 356 KK--IYI-CEKCDQPFCLDCEIFIHESLHTCPGCAT 388
>gi|320166414|gb|EFW43313.1| general transcription factor IIH [Capsaspora owczarzaki ATCC 30864]
Length = 427
Score = 337 bits (863), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 177/420 (42%), Positives = 261/420 (62%), Gaps = 29/420 (6%)
Query: 19 DEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATT 78
DEDD++N WE+ Y +R+W+ LQED G LR S H + +RR R ++ V
Sbjct: 14 DEDDDMNNKGYVWEQQY--ERTWDVLQEDAQGSLRA---SVEEHERAKRR-RFKTQVQG- 66
Query: 79 ARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVK 138
+++G++R+L I++D+S + D +P+R+ + +E FV EFFDQNP+SQ+ + +
Sbjct: 67 --VRRGMMRHLTIILDMSSRMDDPDLKPTRLEHSIRLLEQFVPEFFDQNPISQLNFIISR 124
Query: 139 DGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYS 198
D A +++LGG+P H+++L K +G+ SLQN+L+L + L +PS+ +EVLI+
Sbjct: 125 DAKAERISELGGNPAKHLESLRKKASTAGEISLQNSLELARESLRLMPSHTSKEVLIIMG 184
Query: 199 ALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELI 258
L++CDPGDI +TI + I CSVIGLSAE+ ICK+L + T G ++V +DESHF++++
Sbjct: 185 GLASCDPGDIFQTISLLELDNIHCSVIGLSAEVRICKYLAEKTKGVHNVIIDESHFRDML 244
Query: 259 MEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELP 318
+H PPPA + A LI+MGFP++ + ++C+CHK + G GY CP+CKA+ CELP
Sbjct: 245 FQHITPPPASSRTE-ALLIRMGFPRQNLSKAATLCACHKLFRAG-GYICPQCKAKCCELP 302
Query: 319 TDCRICGLQLVSSPHLARSYHHLFPIAPFDEV-------------TPLCLNDPRNRSRST 365
T C +CGL LVSSPHLARSYHHLFP+APF EV L N +
Sbjct: 303 TTCAVCGLTLVSSPHLARSYHHLFPLAPFREVPLAHPPADANGLLAGLVANSTTLALHPS 362
Query: 366 CFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLRHSNPIVANEG 425
C GC + + + CP C +CL+CDI+IH++LH CP C +L + VAN G
Sbjct: 363 CRGCSKPTATMRSA----FQCPTCCHVYCLDCDIFIHDTLHTCPSCVALLDGSA-VANGG 417
>gi|332017887|gb|EGI58547.1| General transcription factor IIH subunit 2 [Acromyrmex echinatior]
Length = 598
Score = 334 bits (857), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 171/394 (43%), Positives = 248/394 (62%), Gaps = 32/394 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +++WEA++ED+ G L ++A+ +R+L + AR+ G++R+LY
Sbjct: 208 WETGY--EKTWEAIKEDDHGLLEASVADIIHNAKRKRQLERKQ----GARL--GMMRHLY 259
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
I++D S + + D +P+R K +E F+ EFF QNP+SQ+G++ ++ A ++DL G
Sbjct: 260 IILDASESMSNQDLKPTRFLCSLKLLEDFIEEFFYQNPISQLGVIITRNKRAEKISDLAG 319
Query: 151 SPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+ + HIK L + + G+ SLQN+L+L LL +PS+ +E+L++ AL+TCDPGDI
Sbjct: 320 NSKKHIKELQILQQTVVGGEPSLQNSLELATKLLKLLPSHASKEILVIIGALTTCDPGDI 379
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
ETI+ K IRCSVIGL+AE++ICK + TGG +SVALD+ H+KE + H PPPA
Sbjct: 380 NETIRNMKLDSIRCSVIGLAAELYICKRMANITGGEHSVALDDKHYKEQLNAHIDPPPAA 439
Query: 269 AEFAIANLIKMGFPQR-----AGEGSISICSCH-----KEVK-VGVGYTCPRCKARVCEL 317
A L+KMGFP A + SI++C CH + VK + GY CP+C ++ CEL
Sbjct: 440 TRLD-AALVKMGFPHHALHSNAPDTSITVCMCHAHNSDETVKFMTTGYLCPQCISKHCEL 498
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P +CR CGL LVS+PHLARSYH+LFP+ PF E+ P + + CFGCQ++
Sbjct: 499 PVECRACGLTLVSAPHLARSYHYLFPVDPFKEIAP-------DSDYTICFGCQKAFAQKD 551
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
K AC KC + FCL+C+I+IHE LH CPGC
Sbjct: 552 KK---VYACGKCNQMFCLDCEIFIHEILHTCPGC 582
>gi|307169945|gb|EFN62454.1| General transcription factor IIH subunit 2 [Camponotus floridanus]
Length = 401
Score = 333 bits (854), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 173/407 (42%), Positives = 251/407 (61%), Gaps = 36/407 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +++WEA++ED+ G L ++A+ +R+L + AR+ G++R+LY
Sbjct: 13 WETGY--EKTWEAIKEDDHGLLEASVADIIHNAKRKRQLERKQ----GARL--GMMRHLY 64
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
I++D S + + D +P+R K +E F+ EFF QNP+SQ+G++ ++ A ++DL G
Sbjct: 65 IILDASESMSNQDLKPTRFLCSLKLLEDFIEEFFYQNPISQLGVIITRNKRAEKISDLAG 124
Query: 151 SPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+ + HIK L + + +G+ SLQN+L+L L +PS+ +E+LI+ AL+TCDPGDI
Sbjct: 125 NSKKHIKELRALQQTIVTGEPSLQNSLELATKSLKLLPSHASKEILIIIGALTTCDPGDI 184
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
ETI+ K IRCSVIGL+AE++ICK + TGG + VALD+ H+KE + H PPPA
Sbjct: 185 NETIRNMKLDSIRCSVIGLAAELYICKRMANITGGEHGVALDDKHYKEQLNAHIDPPPAA 244
Query: 269 AEFAIANLIKMGFPQR-----AGEGSISICSCHKE-----VKV-GVGYTCPRCKARVCEL 317
A L+KMGFP A + S+++C CH E VK+ GY CP+C ++ CEL
Sbjct: 245 TRLDAA-LVKMGFPHHALHSSASDTSMTVCMCHAENSDESVKLMSTGYLCPQCFSKHCEL 303
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P +CR CGL LVS+PHLARSYH+LFP+ PF EVT + S CFGCQ++
Sbjct: 304 PVECRACGLTLVSAPHLARSYHYLFPVEPFREVT-------FEGNHSFCFGCQKTFAQKD 356
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLRHSNPIVANE 424
K C KC + FCL+C+I+IH+ LH CPGC +NP N+
Sbjct: 357 KK---VYTCEKCNQTFCLDCEIFIHDILHTCPGCA----TNPATYNK 396
>gi|348680619|gb|EGZ20435.1| hypothetical protein PHYSODRAFT_345458 [Phytophthora sojae]
Length = 387
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 171/398 (42%), Positives = 242/398 (60%), Gaps = 37/398 (9%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYL 89
AWE A +RSW+ ++ED+SG L+ ID A Q +RRL ++KGLIRY
Sbjct: 10 AWEG--ALERSWDVIEEDDSGNLK-IDQ-AVKKQQRQRRLE------IARNVRKGLIRYT 59
Query: 90 YIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
Y+V+DLSR A D++P R+A + ++ FV+++FDQNP+SQ+G++ +K A L+DL
Sbjct: 60 YVVMDLSRGMATKDWKPHRLACASDVLQQFVKDYFDQNPISQLGVIGIKGMTAEKLSDLS 119
Query: 150 GSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIM 209
G+P +H++ + L + SLQNAL++ + L +P+YG RE++++Y L T DPGDI
Sbjct: 120 GNPNTHMERIAAALAVDKEPSLQNALEIAKSSLKTVPAYGSREIVVVYGNLVTADPGDIF 179
Query: 210 ETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIA 269
+T+ K IR S IG+ AEM + + + T G+Y VA+D H K L+ P P +A
Sbjct: 180 QTLASLKRENIRVSFIGIGAEMHLLRRIADGTDGTYHVAVDAEHMKRLMTAFTFPSPTVA 239
Query: 270 EFA--IANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQ 327
A A L++MGFPQR G++S+C+CH+ VGY CPRCK++ C+LPT C++C L
Sbjct: 240 TAASRFATLVEMGFPQRR-SGALSLCTCHQAFTT-VGYLCPRCKSKSCDLPTTCQVCNLP 297
Query: 328 LVSSPHLARSYHHLFPIAPFDE--------------VTPLCLNDPRNRSRSTCFGCQQSL 373
LVSSPHLARSYHHLFP+A F + VTP + + CFGC L
Sbjct: 298 LVSSPHLARSYHHLFPVAKFTQHLLRSGVTGEKGAKVTPSLV-------QKKCFGCLLPL 350
Query: 374 LSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
G G C C+ FC ECD+Y+H+SLHNCPGC
Sbjct: 351 GLDGE--GTAYECTTCQNVFCSECDMYVHDSLHNCPGC 386
>gi|390343479|ref|XP_794347.2| PREDICTED: general transcription factor IIH subunit 2-like
[Strongylocentrotus purpuratus]
Length = 409
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 179/411 (43%), Positives = 254/411 (61%), Gaps = 31/411 (7%)
Query: 21 DDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTAR 80
DD G WE Y +R+WEALQEDE G L+ + A+ RRRL DR +
Sbjct: 3 DDEPEKGY-TWEGDY--ERTWEALQEDEEGSLQATVDDIIQRAK-RRRLEDRP-----SN 53
Query: 81 IQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDG 140
++ G++R+L+I++D SR+ + D +P+R+A K +E F+ E+FDQNP+SQ+G++T +
Sbjct: 54 VRLGMMRHLFILLDCSRSMEDQDLKPNRLACCTKLLEHFIEEYFDQNPISQVGIITSSNM 113
Query: 141 VANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYS 198
A LT+LGG+P+ HI AL C + SLQNAL+L L +P + RE+L++
Sbjct: 114 RAEKLTELGGNPQRHITALEKCNDKPCVKEPSLQNALELAAATLRHMPGHASREILVIMG 173
Query: 199 ALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELI 258
+L+TCDPG+I +TIQ K+ IRC VIGL+A++ +C+ L T G+Y V LDE+HFKEL+
Sbjct: 174 SLTTCDPGNIHDTIQAMKDHSIRCCVIGLAADVRVCRKLATVTHGTYGVILDETHFKELL 233
Query: 259 MEHAPPPPAIAEFAIANLIKMGFPQ------RAGEGSISICSCHKEVK----VGV-GYTC 307
MEH PPPA + I+MGFPQ ++ + S+C CH + K G GY C
Sbjct: 234 MEHTIPPPARVNTE-PSPIRMGFPQHVIHTDKSKVSAPSMCMCHLDGKNSEGFGTGGYFC 292
Query: 308 PRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCF 367
P+C+++ CELP +CR+CGL LVS+PHLARS+HHLFP+ F+E D + C
Sbjct: 293 PQCQSKYCELPVECRVCGLTLVSAPHLARSFHHLFPLDRFEEFK---REDHDHPDSLFCQ 349
Query: 368 GCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLRHSN 418
GCQ + + CPKC FCL+C+++I ESLH+CPGC S R S
Sbjct: 350 GCQSHI-----RDQTAYRCPKCSNVFCLDCELFIQESLHSCPGCASTRPSQ 395
>gi|298708881|emb|CBJ30838.1| General transcription factor II H, polypeptide 2 [Ectocarpus
siliculosus]
Length = 412
Score = 330 bits (847), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 178/416 (42%), Positives = 256/416 (61%), Gaps = 46/416 (11%)
Query: 26 GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGL 85
G AWE+ + +R+WE ++EDE G ++ + + + RRR+ S I++G+
Sbjct: 12 GAGYAWEKGF--ERTWEGVEEDEHGNIKTREEGQRRNRRVRRRVGGES-------IKRGM 62
Query: 86 IRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 145
IRYLY+ IDLS+ A+ D RPSR+AV + V+ FV +FDQNPLSQ+G++ ++G A +
Sbjct: 63 IRYLYLAIDLSKTMADGDMRPSRLAVTLRIVQDFVTNYFDQNPLSQLGILVTREGRAEKI 122
Query: 146 TDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDP 205
T+L G+P++H++AL G++SLQN L++ L +P YG+REV+++YS+LSTCDP
Sbjct: 123 TELSGNPKAHMEALTKDSDTKGEASLQNLLEMACTSLRAVPEYGNREVVVIYSSLSTCDP 182
Query: 206 GDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPP 265
GDI ETI K K K+R SV+GL AEMF+ + L ++T G YS+A DE+H++E +M PP
Sbjct: 183 GDIHETIAKLKTHKVRASVVGLGAEMFVLRRLTEETSGDYSIAGDENHYRESLMAQCTPP 242
Query: 266 PAIA--EFAI-ANLIKMGFPQRAGE--GSISICSCHKEVKVGVGYTCPRCKARVCELPTD 320
P E A+ A+L++MGFP + S+ +E+ V GY+CPRCK + ELP++
Sbjct: 243 PTPPGREGAMFADLVRMGFPAETQDVFPSLGYSGNRQELSVS-GYSCPRCKTKTSELPSE 301
Query: 321 CRICGLQLVSSPHLARSYHHLFPIAPFDEV------------------------TPLCLN 356
C IC L LVSSPHLARSYHHLFP+ FDE+
Sbjct: 302 CVICALPLVSSPHLARSYHHLFPVPQFDEIPAAAPAAAAAAASAGSAGGMGSGAGAGRAT 361
Query: 357 DPRNRSRSTCFGCQQSLLSSGNKPGL-YVACPKCKKHFCLECDIYIHESLHNCPGC 411
+ + S S C GC + L GL CP+C+ FCL+CD+Y+H+SLHNCPGC
Sbjct: 362 EEESASSSYCAGCLRDL------SGLPRYRCPECRSAFCLDCDMYVHDSLHNCPGC 411
>gi|145348017|ref|XP_001418454.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578683|gb|ABO96747.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 407
Score = 330 bits (846), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 177/386 (45%), Positives = 244/386 (63%), Gaps = 15/386 (3%)
Query: 27 GLEAWERSYADDRSWEALQEDE-SGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGL 85
L AWE+ Y +R+WE L+ED +G LR S A+ R R + +AT+A KG+
Sbjct: 30 ALRAWEKKYQSERAWEDLEEDPVTGRLRV--TSEAQTAKARERRAKMAALATSAGAAKGM 87
Query: 86 IRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 145
IR+ Y+V+DLSRAA E DFRP+R++VV + +F+RE+F+QNPLSQ+G++ ++GVA L
Sbjct: 88 IRFTYVVVDLSRAANEEDFRPNRLSVVGQCATSFIREYFNQNPLSQLGIIVARNGVAERL 147
Query: 146 TDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDP 205
T+L GSPE+H AL L SGD SLQN L++ + L IPSYG REVL + S+LSTCDP
Sbjct: 148 TELSGSPEAHAAALRNALDASGDFSLQNTLNVARTSLKSIPSYGSREVLYIVSSLSTCDP 207
Query: 206 GDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPP 265
G++ I K +K+R SV+ ++AE+ + + L ++TGG+Y V+L+ H +LIM HAPPP
Sbjct: 208 GNVWTEIAATKAAKVRVSVVAVAAELHVSRRLTEETGGTYGVSLNADHLDDLIMAHAPPP 267
Query: 266 PAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICG 325
P + ++L++MGFPQ+ ++ V G Y CPRC R+ ELP+ C +C
Sbjct: 268 PLPEDATKSSLVQMGFPQKKHLSKDALV-----VGTGGEYVCPRCSGRIDELPSQCAVCR 322
Query: 326 LQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVA 385
L LVSSPHLARSYHHLFP+APF E T ++ + C C L+ +
Sbjct: 323 LTLVSSPHLARSYHHLFPVAPFKEYT---RDEASAKEVLECKAC----LALIKQTDPASK 375
Query: 386 CPKCKKHFCLECDIYIHESLHNCPGC 411
C +C FC CD YIHE LHNCP C
Sbjct: 376 CEQCSNVFCFACDCYIHEKLHNCPHC 401
>gi|42415511|ref|NP_963875.1| general transcription factor IIH subunit 2 [Danio rerio]
gi|28278887|gb|AAH45397.1| General transcription factor IIH, polypeptide 2 [Danio rerio]
Length = 392
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 174/395 (44%), Positives = 248/395 (62%), Gaps = 34/395 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ +R + + +++ G++R+L+
Sbjct: 11 WEGGY--ERTWEVLKEDESGSLKATVEDILFQAKRKR------VFESHGQVRLGMMRHLF 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
++ID SR+ + D +P+R+ K +E FV E+FDQNP+SQIG++T K+ A LTDL G
Sbjct: 63 VIIDSSRSMEDQDLKPNRLTSTLKLMEHFVEEYFDQNPISQIGIITTKNKRAEKLTDLAG 122
Query: 151 SPESHIKALMGKL--GCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P+ HI AL + C G+ SL N+L++ L +P++ REVL+++S+L+TCDPG+I
Sbjct: 123 NPKKHITALRKAVDSTCVGEPSLYNSLNMALQTLKHMPAHTSREVLVIFSSLTTCDPGNI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
E I+ KIR SVIGLSAE+ +C L ++TGGSY+V LDESHFKEL++ H PPPA
Sbjct: 183 YELIKTLNGLKIRVSVIGLSAEVRVCTILTRETGGSYNVILDESHFKELLLLHVKPPPAS 242
Query: 269 AEFAIANLIKMGFPQRA--------GEGSISIC----SCHKEVKVGVGYTCPRCKARVCE 316
+ + +LI+MGFPQ + S S+ S E+ +G GY CP+C+A+ E
Sbjct: 243 SS-SECSLIRMGFPQHVIASLSDQDAKPSFSMAHLDSSSEPELSLG-GYYCPQCRAKYTE 300
Query: 317 LPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSS 376
LP +C++CGL LVS+PHLARS+HHLFP+ F E TPL C CQ L
Sbjct: 301 LPVECKVCGLTLVSAPHLARSFHHLFPLEAFQE-TPL----EEYEGERFCEACQGEL--- 352
Query: 377 GNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
K C CKK FC+ECDI+IH++LH CPGC
Sbjct: 353 --KDKSVFTCLACKKVFCVECDIFIHDTLHCCPGC 385
>gi|406604786|emb|CCH43771.1| General transcription factor IIH subunit 2 [Wickerhamomyces
ciferrii]
Length = 420
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 171/398 (42%), Positives = 241/398 (60%), Gaps = 26/398 (6%)
Query: 25 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKG 84
NGG +WE Y RSW+ ++EDE+G + I + H + R ++ Q+G
Sbjct: 39 NGGY-SWEDEY--QRSWDIVKEDEAGSIAGIVSGLLQHQKKR-------IIKNVTPFQRG 88
Query: 85 LIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 144
+IR L +++DLS + E D RP+R ++ FV EFFDQNP+SQ+G++ +++G+
Sbjct: 89 IIRNLILILDLSSSMLEKDLRPNRHSITITNAIQFVTEFFDQNPISQLGIIIMRNGIGQL 148
Query: 145 LTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALST 202
++ +GG+P+ HI AL + KL GD SLQNAL++ +GLL + S+ REVLI+Y +L +
Sbjct: 149 VSQVGGNPQEHIDALKSIKKLEPKGDPSLQNALEMSRGLLMHVASHCTREVLIIYGSLLS 208
Query: 203 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELI 258
DPG+I +T+ E KIR +IGLSA++ ICK +C+ T SY+V L+E HFKEL
Sbjct: 209 LDPGNIHKTVNSLVEEKIRVKIIGLSAQVSICKEICKKTNFGDENSYNVILNEQHFKELF 268
Query: 259 MEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELP 318
M+ P P L+KMGFP R E S S CSCH ++ G GY CP CK+++C LP
Sbjct: 269 MDAVVPLPVNKINKSFTLVKMGFPYRISEDSPSFCSCHSKLTYG-GYICPNCKSKICSLP 327
Query: 319 TDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL---LS 375
T C C L+ S HLARSYHHL P+ F EV P+ +N + CFGCQ L L
Sbjct: 328 TICPCCNTMLILSTHLARSYHHLLPLKNFIEV-PV----DKNYDVNLCFGCQMELPDGLI 382
Query: 376 SGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 413
+ Y C C FC++CD++IHE+LHNCPGCE+
Sbjct: 383 TQTSSSRY-KCVDCNNQFCIDCDVFIHETLHNCPGCEN 419
>gi|350418129|ref|XP_003491749.1| PREDICTED: general transcription factor IIH subunit 2-like [Bombus
impatiens]
Length = 400
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 167/396 (42%), Positives = 254/396 (64%), Gaps = 32/396 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +++WEA++ED+ G L ++A+ +R++ + AR+ G++R+LY
Sbjct: 12 WETGY--EKTWEAIKEDDHGLLEASVADIIHNAKRKRQMEKK----VGARL--GMMRHLY 63
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+++D S + + D +P+R K +E F+ EFF QNP+SQ+G++ ++ A +++L G
Sbjct: 64 VILDASESMSLQDLKPTRFLCSLKLLEDFIEEFFYQNPISQLGVIITRNKRAEKVSELAG 123
Query: 151 SPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+ + H+K + M ++ G+ SLQN+++L L +PS+ +E+LI+ AL+TCDPGDI
Sbjct: 124 NSKKHVKEVQNMQQIAPVGEPSLQNSIELALKSLRLLPSHASKEILIIVGALTTCDPGDI 183
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
ETIQ K +RCSVIGL+AE++ICK + TGG + VALD+ H+KE + H PPPA
Sbjct: 184 NETIQNMKTDSVRCSVIGLAAELYICKRMATATGGEHGVALDDKHYKEQLNMHIDPPPAA 243
Query: 269 AEFAIANLIKMGFPQR-----AGEGSISICSCHKE-----VK-VGVGYTCPRCKARVCEL 317
A L+KMGFP A + ++++C CH E VK + GY CP+C ++ CEL
Sbjct: 244 TRLDAA-LVKMGFPHHALHSSANDSAMAVCMCHAESSDESVKLLSTGYLCPQCLSKHCEL 302
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P +CR CGL LVS+PHLARSYH+LFP+ F EV + + STC+GCQ+ +LS
Sbjct: 303 PVECRACGLTLVSAPHLARSYHYLFPVESFKEVV-------FSGTPSTCYGCQK-ILSQK 354
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 413
+K +Y+ C KC + FCL+C+I+IHESLH CPGC +
Sbjct: 355 DKK-VYI-CNKCNETFCLDCEIFIHESLHTCPGCAT 388
>gi|383853156|ref|XP_003702089.1| PREDICTED: general transcription factor IIH subunit 2-like
[Megachile rotundata]
Length = 400
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 170/396 (42%), Positives = 252/396 (63%), Gaps = 32/396 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +++WEA++ED+ G L ++A+ +R++ + AR+ G++R+LY
Sbjct: 12 WETGY--EKTWEAIKEDDHGLLEASVADIIHNAKRKRQMNRK----IGARL--GMMRHLY 63
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
I++D S + + DF+P+R K +E FV EFF QNP+SQ+G++ ++ A +++L G
Sbjct: 64 IILDASESMSIQDFKPTRFLCSLKLLEDFVEEFFYQNPISQLGVIITRNKRAEKVSELVG 123
Query: 151 SPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+ + HIK + M ++ +G+ SLQN+L+L L +PS+ +E+LI+ AL+TCDPGDI
Sbjct: 124 NSKKHIKEIQNMQQMVPAGEPSLQNSLELALKSLRLLPSHASKEILIIIGALTTCDPGDI 183
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
ETIQ K IRCSVIGL+AE++ICK + TGG + VALD+ H+KE + H PPPA
Sbjct: 184 NETIQGMKSDCIRCSVIGLAAELYICKRMATATGGEHGVALDDKHYKEQLNMHIDPPPAA 243
Query: 269 AEFAIANLIKMGFPQRA-----GEGSISICSCHKE-----VK-VGVGYTCPRCKARVCEL 317
A L+KMGFP A + ++++C CH E VK + GY CP+C ++ CEL
Sbjct: 244 TRLDAA-LVKMGFPHHALHSSVNDSAMAVCMCHAENSEESVKLISTGYLCPQCLSKHCEL 302
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P +CR CGL LVS+PHLARSYH+LFP+ PF E + + S C+GCQ++
Sbjct: 303 PVECRACGLTLVSAPHLARSYHYLFPVEPFTETV-------FDGTPSLCYGCQKNFSQMD 355
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 413
K +Y+ C KC + FCL+C+I+IHESLH CPGC +
Sbjct: 356 KK--IYI-CNKCSQAFCLDCEIFIHESLHTCPGCAT 388
>gi|308805072|ref|XP_003079848.1| basic transcription factor 2, 44kD subunit-related (ISS)
[Ostreococcus tauri]
gi|116058305|emb|CAL53494.1| basic transcription factor 2, 44kD subunit-related (ISS)
[Ostreococcus tauri]
Length = 414
Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 180/409 (44%), Positives = 241/409 (58%), Gaps = 13/409 (3%)
Query: 11 GEAEEEEEDEDD--NLNGGLEAWERSYADDRSWEALQEDE-SGFLRPIDNSAFYHAQYRR 67
G E + DE D L AWE+ Y +R+WE L+ED +G LR N+ + R
Sbjct: 8 GGGSESDSDEIDAERAQASLRAWEKKYQSERAWEDLEEDPLTGRLRV--NARAVELRARE 65
Query: 68 RLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQN 127
R + A KG++R+ Y+V+DLSRAA E DFRP+R++VV AFVREFF+QN
Sbjct: 66 RRAKMASAALRGGAAKGMMRFAYVVVDLSRAANEEDFRPNRLSVVGHCAAAFVREFFNQN 125
Query: 128 PLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPS 187
PLSQ+G++ ++GVA LT+L GSPE+H AL L SGD SLQN L+ + L IPS
Sbjct: 126 PLSQLGIIVARNGVAERLTELSGSPEAHCAALRNALDASGDFSLQNTLNAARTSLKSIPS 185
Query: 188 YGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSV 247
YG REVL + S+L+TCDPG++ IQ K +K+R SV+ ++AE+ + + L ++TGG+Y V
Sbjct: 186 YGSREVLYIMSSLATCDPGNVWTEIQATKAAKVRVSVVAVAAELHVARRLSEETGGTYGV 245
Query: 248 ALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTC 307
+++ H +LIM HAPPPP + + L++MGFPQ+ ++ V Y C
Sbjct: 246 SMNADHLDDLIMAHAPPPPLAEDATKSCLVQMGFPQKKHVSKDALI-----VGTRGDYVC 300
Query: 308 PRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCF 367
PRC R+ ELP+ C +C L LVSSPHLARSYHHLFP+ F E N S
Sbjct: 301 PRCSGRIDELPSQCTVCRLTLVSSPHLARSYHHLFPVPAFKEYAS--RNVSAKESGIVAL 358
Query: 368 GCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLRH 416
C + L+S L C C FC CDI+IHE LHNCP C H
Sbjct: 359 EC-SACLASITDASLASECEHCSNVFCFACDIFIHERLHNCPHCSCATH 406
>gi|332373040|gb|AEE61661.1| unknown [Dendroctonus ponderosae]
Length = 395
Score = 328 bits (841), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 170/406 (41%), Positives = 256/406 (63%), Gaps = 33/406 (8%)
Query: 19 DEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATT 78
DEDD WE Y +++WEA++ED+ GFL A+ RR+ + +
Sbjct: 2 DEDDPKE---YRWETGY--EKTWEAIKEDDDGFLEASVAVIILRAKRRRQAQKK------ 50
Query: 79 ARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVK 138
+ G++R+L++++D S + + D +P+RM + +E F+ EFFDQNP+SQ+G++ ++
Sbjct: 51 GNTKLGMMRHLFLILDCSESMSSQDLKPTRMLCSLRILEGFIEEFFDQNPISQMGIILMQ 110
Query: 139 DGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLIL 196
+ A + +LGG+ HIK L M K G+ SLQN L+ L +P++ REVL++
Sbjct: 111 NKRAEKVCELGGNFRKHIKYLRSMSKTSLLGEPSLQNGLEDAFSSLKLVPTHASREVLVI 170
Query: 197 YSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKE 256
+L+TCDP DI TIQK K+ IRCS+IGL+AE+ IC+ L +T G+Y++ LD+SH+K+
Sbjct: 171 MGSLTTCDPTDINTTIQKFKQEGIRCSIIGLAAEVHICRTLANETKGTYNIILDDSHYKD 230
Query: 257 LIMEHAPPPPAIAEFAIANLIKMGFP-QRAGEGS---ISICSCH----KEVKVGV-GYTC 307
L+ + PPPA A+LIKMGFP Q EG+ ++IC CH +E K+ GY C
Sbjct: 231 LLYQQVEPPPAAVALE-ASLIKMGFPHQMNTEGTDEPLTICMCHVDSTEEGKLTTGGYYC 289
Query: 308 PRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCF 367
P+C ++ CELP +CR CGL LVS+PHLARSYHHLFP A F+E+ ++ +TC+
Sbjct: 290 PQCLSKYCELPVECRACGLTLVSAPHLARSYHHLFPPANFEEMQ-------FDKQVTTCY 342
Query: 368 GCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 413
CQ++ + G+K CP CK+ FC++CDI+IH++LH CPGC +
Sbjct: 343 ACQKT-FNDGDKQ--VYQCPTCKRMFCIDCDIFIHDTLHTCPGCAT 385
>gi|340715742|ref|XP_003396368.1| PREDICTED: general transcription factor IIH subunit 2-like [Bombus
terrestris]
Length = 400
Score = 328 bits (840), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 166/396 (41%), Positives = 254/396 (64%), Gaps = 32/396 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +++WEA++ED+ G L ++A+ +R++ + AR+ G++R+LY
Sbjct: 12 WETGY--EKTWEAIKEDDHGLLEASVADIIHNAKRKRQMEKK----VGARL--GMMRHLY 63
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+++D S + + D +P+R K +E F+ EFF QNP+SQ+G++ ++ A +++L G
Sbjct: 64 VILDASESMSLQDLKPTRFLCSLKLLEDFIEEFFYQNPISQLGVIITRNKRAEKVSELAG 123
Query: 151 SPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+ + H+K + M ++ G+ SLQN+++L L +P++ +E+LI+ AL+TCDPGDI
Sbjct: 124 NSKKHVKEVQNMQQIAPVGEPSLQNSIELALKSLRLLPTHASKEILIIVGALTTCDPGDI 183
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
ETIQ K +RCSVIGL+AE++ICK + TGG + VALD+ H+KE + H PPPA
Sbjct: 184 NETIQNMKTDSVRCSVIGLAAELYICKRMATATGGEHGVALDDKHYKEQLNMHIDPPPAA 243
Query: 269 AEFAIANLIKMGFPQR-----AGEGSISICSCHKE-----VK-VGVGYTCPRCKARVCEL 317
A L+KMGFP A + ++++C CH E VK + GY CP+C ++ CEL
Sbjct: 244 TRLDAA-LVKMGFPHHALHSSANDSAMAVCMCHAESSDESVKLLSTGYLCPQCLSKHCEL 302
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P +CR CGL LVS+PHLARSYH+LFP+ F EV + + STC+GCQ+ +LS
Sbjct: 303 PVECRACGLTLVSAPHLARSYHYLFPVESFKEVV-------FSGTPSTCYGCQK-ILSQK 354
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 413
+K +Y+ C KC + FCL+C+I+IHESLH CPGC +
Sbjct: 355 DKK-VYI-CNKCNETFCLDCEIFIHESLHTCPGCAT 388
>gi|449670653|ref|XP_002167169.2| PREDICTED: general transcription factor IIH subunit 2-like [Hydra
magnipapillata]
Length = 384
Score = 328 bits (840), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 166/391 (42%), Positives = 243/391 (62%), Gaps = 30/391 (7%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
W Y +++WEA+QED+ G L+ + + A+ +R L+ ++ G++R+LY
Sbjct: 12 WLNEY--EKTWEAIQEDDDGLLQSSIDEIVHQAKRKR------LLVRKGNVRLGMMRHLY 63
Query: 91 IVIDLSRAAAEMDF-RPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
I++D+S++ E D RPSR+A + K +E F+ E+FDQNP+SQ ++ A +TDL
Sbjct: 64 IILDMSKSMKESDLLRPSRLACLTKLLENFIVEYFDQNPISQ-----TRNKRAEKITDLS 118
Query: 150 GSPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 207
G+P HI AL K G G+ SLQN+LD+ L +P + RE+LI++ +L+TCDPGD
Sbjct: 119 GNPNIHIAALQNFVKSGPEGEPSLQNSLDMALQFLGHLPKHASREILIVFGSLTTCDPGD 178
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 267
I TI K IRCSV+GLSAE+ +CK + +T G Y+V LDE H +L++EH PP A
Sbjct: 179 IFTTINNLKNENIRCSVLGLSAEIKLCKTISSETNGIYNVILDEKHCNDLLLEHIRPPAA 238
Query: 268 IAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVG-----VGYTCPRCKARVCELPTDCR 322
A+L++MGFPQ ++C CH E+K GY CP+CK + CELP +C+
Sbjct: 239 KLNVE-ASLVRMGFPQHISNTYPALCLCHIELKNMQGFNCTGYFCPQCKNKYCELPVECK 297
Query: 323 ICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGL 382
+CGL LVS+PHLARSY HLFP+ PF+EV + + S C GCQ++ + + +
Sbjct: 298 VCGLTLVSAPHLARSYQHLFPLPPFEEVRRI---ETAANKNSICQGCQRNCIDA-----I 349
Query: 383 YVACPKCKKHFCLECDIYIHESLHNCPGCES 413
C +CK+ FC +CD++IHE+LH CPGC S
Sbjct: 350 VYICKECKEMFCNDCDMFIHETLHTCPGCTS 380
>gi|213511927|ref|NP_001135173.1| general transcription factor IIE, polypeptide 2-2 [Salmo salar]
gi|197632439|gb|ACH70943.1| general transcription factor IIE, polypeptide 2-2 [Salmo salar]
Length = 393
Score = 327 bits (838), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 173/395 (43%), Positives = 242/395 (61%), Gaps = 33/395 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ +R + + +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATVEEILFQAKRKR------VFESHGQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+VID SR + D +P+R+ K VE FV E+FDQNP+SQ+G++T K+ A LTDL G
Sbjct: 63 VVIDTSRTMEDQDLKPNRLTSTLKLVEYFVEEYFDQNPISQVGIITTKNKRAEKLTDLAG 122
Query: 151 SPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P+ HI AL C G+ SL N++ L L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPKKHIDALKKAKDSTCGGEPSLYNSISLAMQTLKHMPGHSSREVLIIFSSLTTCDPANI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
E ++ K KIR SVIGLSAE+ +C L ++TGGSY V LDESHF+EL+M H PPPA
Sbjct: 183 YELVKTLKALKIRVSVIGLSAEVRVCTVLTRETGGSYHVILDESHFRELLMFHVKPPPAT 242
Query: 269 AEFAIANLIKMGFPQRA------GEGSISICSCHKEVKVG------VGYTCPRCKARVCE 316
+ + +LI+MGFPQ + S H + G GY CP+C+A+ E
Sbjct: 243 SS-SECSLIRMGFPQHTIASLSDQDAKPSFSQAHLDSTSGGPGLSMGGYFCPQCQAKYTE 301
Query: 317 LPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSS 376
LP +C++CGL LVS+PHLARS+HHLFP+ F E +PL L+ +R R C CQ L
Sbjct: 302 LPVECKVCGLTLVSAPHLARSFHHLFPLEAFQE-SPLLLH---HRER-FCEACQGEL--- 353
Query: 377 GNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
K CP C FC+ECD++IH++LH CP C
Sbjct: 354 --KDRSVFTCPSCSSVFCVECDLFIHDTLHCCPSC 386
>gi|449271199|gb|EMC81725.1| General transcription factor IIH subunit 2 [Columba livia]
Length = 395
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 173/394 (43%), Positives = 246/394 (62%), Gaps = 32/394 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ R+RL + +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAK-RKRLYEHH-----GQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQ+GL+ K A +T+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVDEYFDQNPISQVGLIVTKSKRAEKMTELSG 122
Query: 151 SPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+ + HI AL + CSG+ SL NAL+L L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NSKKHITALKKAADMTCSGEPSLYNALNLAMQTLKHMPGHTSREVLIVFSSLTTCDPANI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
+ I+ K KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+M H PPPA
Sbjct: 183 YDLIKCLKAVKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLMHHVSPPPAS 242
Query: 269 AEFAIANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCEL 317
+ + +LI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SN-SECSLIRMGFPQHTIASLSDQDAKPSFSMAQLESSSEPGLTLGGYFCPQCRAKYCEL 301
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P +C+ICGL LVS+PHLARSYHHLFP+ F EV PL + C GCQ +
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEV-PL----EEYQGERYCQGCQGEM---- 352
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
+Y+ C C+ FC+ECD+++H+SLH CPGC
Sbjct: 353 KDQNVYI-CKVCQNAFCVECDVFVHDSLHCCPGC 385
>gi|348543161|ref|XP_003459052.1| PREDICTED: general transcription factor IIH subunit 2-like
[Oreochromis niloticus]
Length = 392
Score = 326 bits (835), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 174/394 (44%), Positives = 241/394 (61%), Gaps = 32/394 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ Y ++ +R ++ + +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEVLKEDESGSLKATVEEILYQSKRKR------VIESHGQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+VID SR+ + D +P+R+ K +EAFV E+FDQNP+SQ+G++T K+ A LTDL G
Sbjct: 63 VVIDCSRSMEDQDLKPNRLTSTLKLMEAFVDEYFDQNPISQVGIITTKNKRAEKLTDLAG 122
Query: 151 SPESHIKALMGKLG--CSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P+ HI ALM + C G+ SL N+L+L L +P + RE+LI+ S+L+TCDP +I
Sbjct: 123 NPKKHITALMKAVDTVCVGEPSLYNSLNLAIQTLKHMPGHTSREILIILSSLTTCDPANI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
E I+ K K+R SVIGLSAE+ +C L ++TGGSY V LDESHFKEL+M H PPPA
Sbjct: 183 YELIKTLKSLKVRVSVIGLSAEVRVCTVLTRETGGSYHVILDESHFKELLMLHIKPPPA- 241
Query: 269 AEFAIANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCEL 317
+ + +LI+MGFPQ + S S+ G+ GY CP+C A EL
Sbjct: 242 SSSSECSLIRMGFPQHTIASVTDQDAKPSFSMSHLDSSSGPGLSLGGYFCPQCHATYTEL 301
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P +C++CGL LVS+PHLARS+HHLFP+ F E L R C CQ L
Sbjct: 302 PVECKVCGLTLVSAPHLARSFHHLFPLQAFIESPVENLQGDR-----FCQACQAEL---- 352
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
K +CP C FC+ECD++IHESLH CP C
Sbjct: 353 -KDKSVFSCPSCHSVFCVECDLFIHESLHCCPCC 385
>gi|149727084|ref|XP_001504093.1| PREDICTED: general transcription factor IIH subunit 2 [Equus
caballus]
Length = 395
Score = 325 bits (832), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 171/394 (43%), Positives = 243/394 (61%), Gaps = 32/394 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIITKSKRAEKLTELSG 122
Query: 151 SPESHIKALMGKLG--CSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P HI +L + C G+ SL N+L + L +P + REVLI++S+L+TCDP DI
Sbjct: 123 NPRKHITSLKKAVAMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSDI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
IQ K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA
Sbjct: 183 YGLIQTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPAS 242
Query: 269 AEFAIANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCEL 317
+ + +LI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SN-SECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDSSSEPGLTLGGYFCPQCRAKYCEL 301
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P +C+ICGL LVS+PHLARSYHHLFP+ F E+ PL + N R C+GCQ L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-PL---EEHNGER-FCYGCQGEL---- 352
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
+Y+ C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 KDQHVYI-CTVCRHVFCVDCDVFVHDSLHCCPGC 385
>gi|409044666|gb|EKM54147.1| hypothetical protein PHACADRAFT_185111 [Phanerochaete carnosa
HHB-10118-sp]
Length = 451
Score = 325 bits (832), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 170/405 (41%), Positives = 249/405 (61%), Gaps = 36/405 (8%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYL 89
AWE SY R+WE +QEDE+G L + RR L+A +++ +IR+L
Sbjct: 58 AWEASYT--RTWETVQEDEAGSLHTAVRDLIAKGRRRR------LLAPAEAVRRTIIRHL 109
Query: 90 YIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
+V+DLS + + D RP+R ++ + F+ E+FDQNPL QIG+V ++ G+ + ++
Sbjct: 110 ILVLDLSSSMMDRDMRPTRFDLMLQYAREFIAEWFDQNPLGQIGIVGMRGGIGERIGEMS 169
Query: 150 GSPESHIKALM--GKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 207
G+P+ ++++ KL G+ SLQNA+++ + +S +P+ RE+ I++ +L+TCDPG+
Sbjct: 170 GNPQDVLRSIAERHKLEPVGEPSLQNAIEMARSSMSHLPTNSSREITIIFGSLTTCDPGN 229
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPP-- 265
I +T+ +C + KIR S++ L+AEM IC+ LC TGG + VAL+E HFK+L+ E PPP
Sbjct: 230 IHDTLDECVKDKIRISLVALAAEMKICRELCVKTGGQFGVALNEGHFKDLLFELIPPPAQ 289
Query: 266 --------PAIAEFAIANLIKMGFPQRAGEGS-ISICSCHKEVKVGVGYTCPRCKARVCE 316
P A A A+LI MGFP R S S+C CH E+K G+ CPRC A+VC+
Sbjct: 290 RALTRANGPGAANPA-ADLIMMGFPTRLPVTSQPSLCVCHGELK-SEGFLCPRCLAKVCD 347
Query: 317 LPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC----QQS 372
+PTDC ICGL +VSSPHLARSYHHLFP+ P+ +T L D +TC+GC Q+
Sbjct: 348 VPTDCDICGLMIVSSPHLARSYHHLFPVKPYTPITNL---DDATSLSATCYGCSVPFQEK 404
Query: 373 LLS------SGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
+L G P CP+C+ FC ECD++IH+ LH CPGC
Sbjct: 405 VLQPNVPLVDGISPLGRYRCPECEHDFCTECDVFIHDVLHCCPGC 449
>gi|358059749|dbj|GAA94518.1| hypothetical protein E5Q_01170 [Mixia osmundae IAM 14324]
Length = 458
Score = 324 bits (831), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 172/438 (39%), Positives = 256/438 (58%), Gaps = 46/438 (10%)
Query: 7 KRLNGEAEEEEEDEDDNLNGGLE-AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQY 65
K G+A + + + NG +WE Y RSW+ ++EDE G L+ ++
Sbjct: 33 KAAQGKANKRRKTANGTANGEANYSWEEDY--KRSWDVVREDERGSLQGAVKDILERSKR 90
Query: 66 RRRLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFD 125
RR +RD T IQ+G+IR+LY +IDLS A + D RP+R+ + K FV E+FD
Sbjct: 91 RRIMRD------TTSIQRGIIRHLYFIIDLSEAMTDRDLRPTRLELTIKYAIEFVNEYFD 144
Query: 126 QNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGK--LGCSGDSSLQNALDLVQGLLS 183
QNP+SQ+ ++ KDG+A ++ L G+P H++AL K L SG+ SLQN L++ + L+
Sbjct: 145 QNPISQMAILVTKDGIAERISPLSGNPVDHVRALESKRKLDPSGEPSLQNVLEMARSGLA 204
Query: 184 QIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGG 243
+PS+G REV+I++ +L+TCDPG+I T++ + ++R +++GLSAEM ICK +C+ T G
Sbjct: 205 HLPSHGSREVVIIFGSLTTCDPGNIHTTMEALVKDRVRVNIVGLSAEMSICKEVCKRTKG 264
Query: 244 SYSVALDESHFKELIMEHAPPPP----------AIAEFAIANLIKMGFPQRAGEGSISIC 293
Y V +E+H+K+L+ E PPP + + A+L++MGFP + ++C
Sbjct: 265 VYGVVTNEAHYKDLLFELVPPPATHRPEAGPDGSRSNNTGADLMQMGFPSLSSSTFGALC 324
Query: 294 SCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPL 353
SCH +K G+ CPRC +R+CE+PT+C IC L +VSSPHLARSY HLFP+ + EV
Sbjct: 325 SCHSRLKT-TGFNCPRCASRLCEVPTECGICSLTVVSSPHLARSYRHLFPVKNYLEVNN- 382
Query: 354 CLNDPRNRSR-STCFGCQ-------QSLLSSGNKP------------GLYVACPKCKKHF 393
P S + CF C S ++G P G Y CP+C HF
Sbjct: 383 --GQPGEDSWPAECFACSLKFSTVAVSAATTGAPPTAASTASRISSTGRY-ECPRCHNHF 439
Query: 394 CLECDIYIHESLHNCPGC 411
C++CD++ HE L CPGC
Sbjct: 440 CIDCDLHAHEVLGVCPGC 457
>gi|380019349|ref|XP_003693572.1| PREDICTED: general transcription factor IIH subunit 2-like [Apis
florea]
Length = 405
Score = 323 bits (829), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 165/399 (41%), Positives = 253/399 (63%), Gaps = 33/399 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +++WEA++ED+ G L ++ + +R++ + AR+ G++R++Y
Sbjct: 12 WETGY--EKTWEAIKEDDHGLLEASVADIIHNVKRKRQMEKK----VGARL--GMMRHIY 63
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+++D S + + D +P+R K +E F+ EFF QNP+SQ+G++ ++ A +++L G
Sbjct: 64 VILDASESMSIQDLKPTRFLCSLKLLEDFIEEFFYQNPISQLGVIITRNKRAEKVSELTG 123
Query: 151 SPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+ + HIK + M ++ +G+ SLQN+++L L +PS+ +E+LI+ AL+TCDPGDI
Sbjct: 124 NSKKHIKEVQSMQQITPAGEPSLQNSIELALKSLRLLPSHASKEILIIVGALTTCDPGDI 183
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
ETI+ K +RCSVIGL+AE++ICK + TGG + VALD+ H+KE + H PPPA
Sbjct: 184 NETIKNMKSDSVRCSVIGLAAELYICKRMATATGGEHGVALDDKHYKEQLNMHIDPPPAA 243
Query: 269 AEFAIANLIKMGFPQRA-----GEGSISICSCHKE-----VK-VGVGYTCPRCKARVCEL 317
A L+KMGFP A + ++++C CH E VK + GY CP+C ++ CEL
Sbjct: 244 TRLDAA-LVKMGFPHHALHSSTNDSAMAVCMCHAESSDESVKLLSTGYLCPQCLSKHCEL 302
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEV---TPLCLNDPRNRSRSTCFGCQQSLL 374
P +CR CGL LVS+PHLARSYH+LFP+ PF EV + P S C+GCQ+ +
Sbjct: 303 PVECRACGLTLVSAPHLARSYHYLFPVEPFKEVEYRKEVTFEHP-----SICYGCQK-IF 356
Query: 375 SSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 413
S +K +Y+ C KC + FCL+C+I+IHESLH CPGC +
Sbjct: 357 SQKDK-KVYI-CNKCNQTFCLDCEIFIHESLHTCPGCAT 393
>gi|66549743|ref|XP_394997.2| PREDICTED: general transcription factor IIH subunit 2 isoform 1
[Apis mellifera]
Length = 405
Score = 323 bits (829), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 166/399 (41%), Positives = 253/399 (63%), Gaps = 33/399 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +++WEA++ED+ G L ++ + +R++ + AR+ G++R+LY
Sbjct: 12 WETGY--EKTWEAIKEDDHGLLEASVADIIHNVKRKRQMEKK----IGARL--GMMRHLY 63
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+++D S + + D +P+R K +E F+ EFF QNP+SQ+G++ ++ A +++L G
Sbjct: 64 VILDASESMSIQDLKPTRFLCSLKLLEDFIEEFFYQNPISQLGVIITRNKRAEKVSELTG 123
Query: 151 SPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+ + HIK + M ++ +G+ SLQN+++L L +PS+ +E+LI+ AL+TCDPGDI
Sbjct: 124 NSKKHIKEVQSMQQITPAGEPSLQNSIELALKSLRLLPSHASKEILIIVGALTTCDPGDI 183
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
ETI+ K +RCSVIGL+AE++ICK + TGG + VALD+ H+KE + H PPPA
Sbjct: 184 NETIKNMKLDSVRCSVIGLAAELYICKRMATATGGEHGVALDDKHYKEQLNMHIDPPPAA 243
Query: 269 AEFAIANLIKMGFPQRA-----GEGSISICSCHKE-----VK-VGVGYTCPRCKARVCEL 317
A L+KMGFP A + ++++C CH E VK + GY CP+C ++ CEL
Sbjct: 244 TRLD-AALVKMGFPHHALHSSTNDSAMAVCMCHAESSDESVKLLSTGYLCPQCLSKHCEL 302
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEV---TPLCLNDPRNRSRSTCFGCQQSLL 374
P +CR CGL LVS+PHLARSYH+LFP+ PF EV + P S C+GCQ+ +
Sbjct: 303 PVECRACGLTLVSAPHLARSYHYLFPVEPFKEVEYRKEVTFEHP-----SICYGCQK-IF 356
Query: 375 SSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 413
S +K +Y+ C KC + FCL+C+I+IHESLH CPGC +
Sbjct: 357 SQKDK-KVYI-CNKCNQTFCLDCEIFIHESLHTCPGCAT 393
>gi|344272627|ref|XP_003408133.1| PREDICTED: general transcription factor IIH subunit 2-like
[Loxodonta africana]
Length = 395
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 168/394 (42%), Positives = 245/394 (62%), Gaps = 32/394 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P HI +L + C G+ SL N+L++ L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLNMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
+ ++ K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA
Sbjct: 183 YDLVKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPAS 242
Query: 269 AEFAIANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCEL 317
+ + +LI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SN-SECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCEL 301
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P +C++CGL LVS+PHLARSYHHLFP+ F E+ PL + N R C+GCQ L
Sbjct: 302 PVECKVCGLTLVSAPHLARSYHHLFPLDAFQEI-PL---EEYNGER-FCYGCQGEL---- 352
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
+YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 KDQHVYV-CTVCQNVFCVDCDVFVHDSLHCCPGC 385
>gi|449514090|ref|XP_004174671.1| PREDICTED: LOW QUALITY PROTEIN: general transcription factor IIH
subunit 2 [Taeniopygia guttata]
Length = 410
Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 171/394 (43%), Positives = 244/394 (61%), Gaps = 32/394 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ R+RL + +++ G++R+LY
Sbjct: 26 WEGGY--ERTWEILKEDESGSLKATIEDILFKAK-RKRLYEHH-----GQVRLGMMRHLY 77
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+VID SR + D +P+R+ K +E FV E+FDQNP+SQIGL+ K A +T+L G
Sbjct: 78 VVIDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGLIVTKSKRAEKMTELSG 137
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+ + H+ AL + CSG+ SL N+L+L L +P + REVL++ S+L+TCDP +I
Sbjct: 138 NSKKHVTALKKAVDMNCSGEPSLYNSLNLAMQTLKHMPGHTSREVLVVLSSLTTCDPANI 197
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
+ I+ K K+R SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+M H PPPA
Sbjct: 198 YDLIKCLKAVKVRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLMHHVSPPPA- 256
Query: 269 AEFAIANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCEL 317
+ + +LI+MGFPQ + S S+ G+ GY CP+C+A+ CEL
Sbjct: 257 SSTSECSLIRMGFPQHTIASLSDQDAKPSFSMVQLENNSDPGLTLGGYFCPQCRAKYCEL 316
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P +C+ICGL LVS+PHLARSYHHLFP+ F EV PL + C GCQ +
Sbjct: 317 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEV-PL----EEYKGERYCHGCQGEM---- 367
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
+Y+ C C+ FC+ECD+++H+SLH CPGC
Sbjct: 368 KDQNVYI-CKVCQNAFCVECDLFVHDSLHCCPGC 400
>gi|328772181|gb|EGF82220.1| hypothetical protein BATDEDRAFT_19068 [Batrachochytrium
dendrobatidis JAM81]
Length = 409
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 175/411 (42%), Positives = 252/411 (61%), Gaps = 15/411 (3%)
Query: 12 EAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD 71
+ ++EE NG AWE Y RSW+ L ED+SG L+ + + +R R
Sbjct: 2 DINDDEEHPQSGENGQGYAWEEEYK--RSWDILMEDDSGSLQGM-VATMQQQLLLKRRRL 58
Query: 72 RSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQ 131
R + +Q+G+IR + IVIDLS A AE+D RP+R+ +E FV EFFDQNPLS
Sbjct: 59 RKETESAIVVQRGIIRQIIIVIDLSAAMAELDLRPNRLDCTLNFLEMFVVEFFDQNPLSH 118
Query: 132 IGLVTVKDGVANCLTDLGGSPESHIKALMGKLG--CSGDSSLQNALDLVQGLLSQIPSYG 189
+G++ KDG+ +L G+P +KAL + +G+ SLQNAL+L + L+ +P +
Sbjct: 119 LGIIGTKDGMVEKWAELSGNPSEILKALTKRSNRETAGEPSLQNALELARRSLAHVPMHV 178
Query: 190 HREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVAL 249
RE+++LY +L++CDPGDI ETI + IR SVIGL+AE+ +CK +C T G Y+V +
Sbjct: 179 SREIIVLYGSLTSCDPGDIQETINDLCKENIRVSVIGLAAEVQVCKKMCASTNGVYNVIM 238
Query: 250 DESHFKELIMEHAPPPPAI-AEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCP 308
++ H+KE++ H PPPP + + + +N+I+MGFP + +CSCH+ + G+ CP
Sbjct: 239 NDVHYKEILFAHIPPPPLLQTQLSASNIIQMGFPMMKIFDDMVLCSCHQN-PIQKGHICP 297
Query: 309 RCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFG 368
RC A +C +PTDC +C L L+SSP LARSYHHLFP+ F E+ P + S+ CF
Sbjct: 298 RCSATICNIPTDCCLCSLTLISSPSLARSYHHLFPVPNFTEIPP--VQSTSYPSQVECFS 355
Query: 369 CQQSLLSSGNKPGLYV------ACPKCKKHFCLECDIYIHESLHNCPGCES 413
CQ + G Y+ ACP+CK H CL+CD+YIH++LHNCPGC S
Sbjct: 356 CQTPSSMTSFHSGTYMIPTARYACPRCKVHVCLDCDVYIHDTLHNCPGCMS 406
>gi|426246343|ref|XP_004016954.1| PREDICTED: general transcription factor IIH subunit 2 [Ovis aries]
Length = 395
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 168/394 (42%), Positives = 243/394 (61%), Gaps = 32/394 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P HI +L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
+ I+ K +KIR S+IGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA
Sbjct: 183 YDLIKTLKAAKIRVSIIGLSAEVRVCTALARETGGTYHVILDESHYKELLTHHVSPPPAS 242
Query: 269 AEFAIANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCEL 317
+ + +LI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SN-SECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCEL 301
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P +C+ICGL LVS+PHLARSYHHLFP+ F E+ PL + N R C+ CQ L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-PL---EEHNGER-FCYACQGEL---- 352
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
+YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 KDQHVYV-CSVCQNVFCVDCDVFVHDSLHCCPGC 385
>gi|84370085|ref|NP_001033619.1| general transcription factor IIH subunit 2 [Bos taurus]
gi|122142864|sp|Q2TBV5.1|TF2H2_BOVIN RecName: Full=General transcription factor IIH subunit 2; AltName:
Full=General transcription factor IIH polypeptide 2
gi|83638634|gb|AAI09594.1| General transcription factor IIH, polypeptide 2, 44kDa [Bos taurus]
gi|296475883|tpg|DAA17998.1| TPA: general transcription factor IIH subunit 2 [Bos taurus]
gi|440911341|gb|ELR61023.1| General transcription factor IIH subunit 2 [Bos grunniens mutus]
Length = 395
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 168/394 (42%), Positives = 243/394 (61%), Gaps = 32/394 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P HI +L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
+ I+ K +KIR S+IGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA
Sbjct: 183 YDLIKSLKAAKIRVSIIGLSAEVRVCTALARETGGTYHVILDESHYKELLTHHVSPPPAS 242
Query: 269 AEFAIANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCEL 317
+ + +LI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SN-SECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCEL 301
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P +C+ICGL LVS+PHLARSYHHLFP+ F E+ PL + N R C+ CQ L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-PL---EEHNGER-FCYACQGEL---- 352
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
+YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 KDQHVYV-CSVCQNVFCVDCDVFVHDSLHCCPGC 385
>gi|170098262|ref|XP_001880350.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644788|gb|EDR09037.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 396
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 162/403 (40%), Positives = 252/403 (62%), Gaps = 33/403 (8%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYL 89
WE SY RSW+ +QEDE+G L+ S+ R R R R L+A A I++ +IR+L
Sbjct: 4 TWEASYT--RSWDTVQEDEAGSLQ----SSIEELMARGR-RRRYLLAPAAAIRRTIIRHL 56
Query: 90 YIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
+++DLS + + D RP+R ++ + F+ E+FDQNPL QIG+V ++ G+ + ++
Sbjct: 57 VLLLDLSASMMDRDMRPTRFDLMLQYAREFIAEWFDQNPLGQIGVVGMRAGIGERIGEMS 116
Query: 150 GSPESHIKALM--GKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 207
G+P+ +K + KL +G+ SLQNA+++ + ++ +P++ RE+LI++ +L+TCDPG+
Sbjct: 117 GNPQDVLKYIAERHKLEPTGEPSLQNAIEMARSSMNHLPTHSSREILIIFGSLTTCDPGN 176
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 267
I +TI C ++KIR SV+ L+AEM +C+ LC TGG + VA++E HFK+L+ E PPP
Sbjct: 177 IHDTIDTCVKNKIRISVVALAAEMKVCRELCNKTGGQFGVAMNEGHFKDLLFELIPPPAQ 236
Query: 268 IAEFAI-----------ANLIKMGFPQRAGEGSI-SICSCHKEVKVGVGYTCPRCKARVC 315
A + A+L+ MGFP R + + ++C CH E+K G+ CPRC ++VC
Sbjct: 237 HATSRVAGAGTGSSNPAADLMMMGFPTRLPDATAPTLCVCHSELK-SEGFLCPRCLSKVC 295
Query: 316 ELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLS 375
++PTDC ICGL +VSSPHLARSYHHLFP+ P+D + + DP S+C C + +
Sbjct: 296 DVPTDCDICGLMIVSSPHLARSYHHLFPVKPYDALPYGDVTDP----SSSCHACSRPFPT 351
Query: 376 S-------GNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
+ G P CP+C FC +CD+++H+ +H CPGC
Sbjct: 352 AVSASATEGVSPVGRYKCPECHHDFCADCDVFVHDVIHCCPGC 394
>gi|225719554|gb|ACO15623.1| General transcription factor IIH subunit 2 [Caligus clemensi]
Length = 397
Score = 321 bits (823), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 162/398 (40%), Positives = 243/398 (61%), Gaps = 32/398 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +++WEA+QED G +R F + R + L T +++ G++RYLY
Sbjct: 10 WETGY--EKTWEAIQEDGDGLIR------FSVQDIIDKARRKRLAEKTGKVRLGMMRYLY 61
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+++D S + D +P+R+ V K +E F+ E+F NP+SQ+G++ ++ + L++LGG
Sbjct: 62 VILDGSESMQLQDMKPTRLLSVMKLLEVFIEEYFYLNPISQLGIILTRNKRSEVLSELGG 121
Query: 151 SPESHIKALM---GKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 207
+P H + L + C+G+ SLQNALD L +PS+G +E+L ++ +L+TCDP D
Sbjct: 122 NPRKHTERLRKARDDIVCAGEPSLQNALDTALNYLKPMPSHGSKEILSVFGSLTTCDPSD 181
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 267
I TI CK + +R S I L+AE+ I K L + TGG ++V LD+ HFKE++ PPP+
Sbjct: 182 INATIINCKAANVRASFISLTAEVRIYKELTKVTGGDFNVILDDVHFKEILSSQLEPPPS 241
Query: 268 IAEFAIANLIKMGFPQRAGEGS------ISICSCHKE---VKVG-VGYTCPRCKARVCEL 317
+ A+LIKMGFP G+ + + +C CH E K+ G+ CP+C A+ CEL
Sbjct: 242 ATQMD-ASLIKMGFPCHTGDDTSDPRSGLGLCMCHLENNPPKISHTGFLCPQCSAKYCEL 300
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P +C CGL LVS+PHLARSYHHLFP+ PFD+ ++S CF C + L
Sbjct: 301 PVECVSCGLTLVSAPHLARSYHHLFPLPPFDQQI------SSSQSIRECFACMRGL---- 350
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLR 415
N+ ACP+C K++C++CDI+IHE+LH+CPGC S R
Sbjct: 351 NRESKVFACPQCHKNYCIDCDIFIHETLHSCPGCASTR 388
>gi|363744781|ref|XP_003643123.1| PREDICTED: general transcription factor IIH subunit 2-like [Gallus
gallus]
Length = 395
Score = 321 bits (823), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 168/394 (42%), Positives = 245/394 (62%), Gaps = 32/394 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + + A+ R+R+ + +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIDDILFKAK-RKRIYEHH-----GQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQ+GL+ K A +T+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQMGLIVTKSKRAEKMTELSG 122
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P+ HI AL + C G+ SL N+L+L L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPKKHIAALKKAVDMNCQGEPSLYNSLNLAMQTLKHMPGHTSREVLIVFSSLTTCDPANI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
+ I+ K KIR SVIGLSAE+ +C L ++TGG+Y V LDE+H+KEL+M H PPPA
Sbjct: 183 YDLIKCLKAVKIRVSVIGLSAEVRVCTVLTRETGGTYHVILDETHYKELLMHHVSPPPA- 241
Query: 269 AEFAIANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCEL 317
+ + +LI+MGFPQ + S S+ + + GY CP+C+A+ EL
Sbjct: 242 SSTSECSLIRMGFPQHTTASLSDQDAKPSFSMAQLENNSEPCLTLDGYFCPQCRAKYSEL 301
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P +C+ICGL LVS+PHLARSYHHLFP+ F E+ PL + C GCQ +
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-PL----EEYQGERYCQGCQAEI---- 352
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
+Y+ C CK FC+ECD+++H+SLH CPGC
Sbjct: 353 KDQNVYI-CKTCKNAFCVECDVFVHDSLHCCPGC 385
>gi|393246283|gb|EJD53792.1| TFIIH basal transcription factor complex, subunit SSL1 [Auricularia
delicata TFB-10046 SS5]
Length = 464
Score = 320 bits (820), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 169/404 (41%), Positives = 254/404 (62%), Gaps = 29/404 (7%)
Query: 30 AWERSYADDRSWEALQEDESGFLR-PIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRY 88
+WE SY RSW+A+QEDE+G L+ +++ + RR SL+A + I++ +IR+
Sbjct: 65 SWEESYT--RSWDAVQEDEAGSLQSAVEHLIARGRRRRRVALAASLLAPSDAIRRAIIRH 122
Query: 89 LYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL 148
+ IV+D+S + D RP+R ++ + V FV E+FDQNPL QIG+V ++ G+A + D+
Sbjct: 123 VIIVLDMSSGMMDRDLRPTRFDLMLEYVREFVTEWFDQNPLGQIGIVGMRAGLAERVCDM 182
Query: 149 GGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPG 206
GSP+ +K++ KL +GD SLQNAL+L + +S +PS+ REVL+++ +++T DPG
Sbjct: 183 SGSPQDVLKSISERHKLEPTGDPSLQNALELSRASMSHLPSHSSREVLMIFGSITTVDPG 242
Query: 207 DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPP 266
+I +T+ C E KIR S++ L+AEM IC+ LC+ +GG + VAL+E HFK+++ E PPP
Sbjct: 243 NIHDTLAACLEDKIRISIVALAAEMRICRELCEKSGGVFGVALNEGHFKDVMFELIPPPA 302
Query: 267 --------AIAEFAIANLIKMGFPQRAGEGSI-SICSCHKEVKVGVGYTCPRCKARVCEL 317
A A+L+ M FP R E S ++C CH E+K G+ CPRC ARVC++
Sbjct: 303 QRAAAKAAAGGGGTGADLLLMAFPVRLPESSAPTLCVCHLELK-SEGFLCPRCFARVCDV 361
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL---- 373
PTDC +CG+ +VSSPHLARSYHHLFP+ + TP+ + ++ +TC GC +
Sbjct: 362 PTDCDVCGIMIVSSPHLARSYHHLFPVKAY---TPVMTLEGEQQTSATCHGCSMAFQPHK 418
Query: 374 -------LSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPG 410
+ G P CP+C+ FC ECDI++H+ LH CPG
Sbjct: 419 AAASAGATAEGVSPLGRYRCPECQNDFCNECDIFVHDVLHVCPG 462
>gi|116812559|ref|NP_001070896.1| general transcription factor IIH subunit 2 [Rattus norvegicus]
gi|182701382|sp|A0JN27.1|TF2H2_RAT RecName: Full=General transcription factor IIH subunit 2; AltName:
Full=Basic transcription factor 2 44 kDa subunit;
Short=BTF2 p44; AltName: Full=General transcription
factor IIH polypeptide 2; AltName: Full=TFIIH basal
transcription factor complex p44 subunit
gi|116487735|gb|AAI26098.1| General transcription factor IIH, polypeptide 2 [Rattus norvegicus]
Length = 396
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 168/396 (42%), Positives = 243/396 (61%), Gaps = 35/396 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P HI +L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
+ I+ K +KIR SVIGLSAE+ +C L ++TGG+Y V LDE+H+KEL+ H PPPA
Sbjct: 183 YDLIKTLKTAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDETHYKELLARHVSPPPA- 241
Query: 269 AEFAIANLIKMGFPQRA--------GEGSISIC-----SCHKEVKVGVGYTCPRCKARVC 315
+ + +LI+MGFPQ + S S+ S + +G GY CP+C+A+ C
Sbjct: 242 SSGSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDNNSTEPGLTLG-GYFCPQCRAKYC 300
Query: 316 ELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLS 375
ELP +C+ICGL LVS+PHLARSYHHLFP+ F E+ PL + C+GCQ L
Sbjct: 301 ELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-PL----EEYKGERFCYGCQGEL-- 353
Query: 376 SGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
+YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 354 --KDQHVYV-CTVCRNVFCVDCDVFVHDSLHCCPGC 386
>gi|149059192|gb|EDM10199.1| general transcription factor II H, polypeptide 2 (predicted),
isoform CRA_b [Rattus norvegicus]
gi|149059193|gb|EDM10200.1| general transcription factor II H, polypeptide 2 (predicted),
isoform CRA_b [Rattus norvegicus]
Length = 398
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 168/396 (42%), Positives = 243/396 (61%), Gaps = 35/396 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P HI +L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
+ I+ K +KIR SVIGLSAE+ +C L ++TGG+Y V LDE+H+KEL+ H PPPA
Sbjct: 183 YDLIKTLKTAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDETHYKELLARHVSPPPA- 241
Query: 269 AEFAIANLIKMGFPQRA--------GEGSISIC-----SCHKEVKVGVGYTCPRCKARVC 315
+ + +LI+MGFPQ + S S+ S + +G GY CP+C+A+ C
Sbjct: 242 SSGSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDNNSTEPGLTLG-GYFCPQCRAKYC 300
Query: 316 ELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLS 375
ELP +C+ICGL LVS+PHLARSYHHLFP+ F E+ PL + C+GCQ L
Sbjct: 301 ELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-PL----EEYKGERFCYGCQGEL-- 353
Query: 376 SGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
+YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 354 --KDQHVYV-CTVCRNVFCVDCDVFVHDSLHCCPGC 386
>gi|19075300|ref|NP_587800.1| transcription factor TFIIH complex subunit Ssl1
[Schizosaccharomyces pombe 972h-]
gi|26400388|sp|O74995.1|TFH47_SCHPO RecName: Full=TFIIH basal transcription factor complex p47 subunit;
AltName: Full=Suppressor of stem-loop protein 1 homolog;
Short=SSL1 homolog
gi|3406059|gb|AAC29144.1| TFIIH subunit p47 [Schizosaccharomyces pombe]
gi|3560161|emb|CAA20673.1| transcription factor TFIIH complex subunit Ssl1
[Schizosaccharomyces pombe]
Length = 421
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 174/422 (41%), Positives = 244/422 (57%), Gaps = 28/422 (6%)
Query: 2 TNSERKRLNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFY 61
+ SE ++ NG + DDN WE Y RSW+ +QED G L +
Sbjct: 13 SESEDEQKNGRVKVRSRKTDDNEG---YTWEGEY--QRSWDIVQEDAEGSLVGVIAGLIQ 67
Query: 62 HAQYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVR 121
+ +R LRD T +Q+G+IR++ +V+DLS + E DF R + K FV
Sbjct: 68 SGKRKRLLRD------TTPLQRGIIRHMVLVLDLSNSMEERDFHHKRFDLQIKYASEFVL 121
Query: 122 EFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGL 181
EFF+QNP+SQ+ ++ V DG+A+ +TDL G+P+SHI+ L CSG+ SLQNAL++ +
Sbjct: 122 EFFEQNPISQLSIIGVMDGIAHRITDLHGNPQSHIQKLKSLRDCSGNFSLQNALEMARAS 181
Query: 182 LSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDT 241
LS I S+G REVLI++ ++ + DPGDI +TI IR ++GL+AE+ ICK +C T
Sbjct: 182 LSHIASHGTREVLIIFGSILSSDPGDIFKTIDALVHDSIRVRIVGLAAEVAICKEICNKT 241
Query: 242 GGS----YSVALDESHFKELIMEHAPPPPA-IAEFAIANLIKMGFPQRAGEGSISICSCH 296
S Y V + E HF+EL++E PP A+ A+L+ MGFP + E S+C+CH
Sbjct: 242 NSSTKNAYGVVISEQHFRELLLESTIPPATDSAKTTDASLVMMGFPSKVVEQLPSLCACH 301
Query: 297 KEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLN 356
G G+ CPRCKA+VC LP +C C L L+ S HLARSYHHLFP+ + E+ P N
Sbjct: 302 SIPSRG-GFHCPRCKAKVCTLPIECPSCSLVLILSTHLARSYHHLFPLKNWSEI-PWSAN 359
Query: 357 DPRNRSRSTCFGCQQSLLSSGNKP------GLYVACPKCKKHFCLECDIYIHESLHNCPG 410
P++ + CF CQ P + ACP CK HFCL+CD++ HE LH C G
Sbjct: 360 -PKS---THCFACQLPFPKPPVSPFDESTSSMRYACPSCKNHFCLDCDVFAHEQLHECYG 415
Query: 411 CE 412
C+
Sbjct: 416 CQ 417
>gi|395825440|ref|XP_003785941.1| PREDICTED: general transcription factor IIH subunit 2-like
[Otolemur garnettii]
Length = 395
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 165/394 (41%), Positives = 242/394 (61%), Gaps = 32/394 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P HI +L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHIASLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
+ I+ K +KIR S+IGLSAE+ +C L ++TGG+Y V LDESH+KEL+ + PPPA
Sbjct: 183 YDLIKTLKAAKIRVSIIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHYVSPPPAS 242
Query: 269 AEFAIANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCEL 317
+ + +LI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SN-SECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNSEPGLTLGGYFCPQCRAKYCEL 301
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P +C++CGL LVS+PHLARSYHHLFP+ F E+ PL + C+GCQ L
Sbjct: 302 PVECKVCGLTLVSAPHLARSYHHLFPLDAFQEI-PL----EEHHGERFCYGCQGDL---- 352
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
+YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 KDQHVYV-CNACQNVFCVDCDVFVHDSLHCCPGC 385
>gi|391326656|ref|XP_003737828.1| PREDICTED: general transcription factor IIH subunit 2-like
[Metaseiulus occidentalis]
Length = 390
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 172/405 (42%), Positives = 253/405 (62%), Gaps = 36/405 (8%)
Query: 19 DEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATT 78
DED+ +G WE Y +R+WEA++EDESG L+ H R++L L+
Sbjct: 3 DEDEQQDG--YRWESEY--ERTWEAIREDESGNLQA-SVQEIVHKTRRQQL----LLQKN 53
Query: 79 ARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVK 138
R+ G++R+LY+V+DLS + D RPSR+ V ++ FV F+D+NP+SQ+ ++
Sbjct: 54 VRL--GMMRHLYVVLDLSASMNSNDLRPSRIQCVLHLLDDFVDRFYDENPISQLAIIATC 111
Query: 139 DGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLIL 196
+ A ++DL G+P H + L + +G+ SLQN++++ +L +P++ REV+I+
Sbjct: 112 NKRAEKISDLSGNPLKHKEGLAKIKDRLPTGEPSLQNSINMAAAVLQHMPAHSSREVVII 171
Query: 197 YSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKE 256
+L+TCDP DI ETI++ K+ +RCSVIGL+AE+++C+ L + TGGSY + +DE H +E
Sbjct: 172 LGSLTTCDPTDINETIEEAKKLGLRCSVIGLAAEVYVCRRLTEITGGSYHIVVDEDHLRE 231
Query: 257 LIMEHAPPPPAIAEFAIANLIKMGFP--QRAGEGSISICSCHKE--------VKVGVGYT 306
L+ H PPPA+ +++KMGFP + E + ++C CH E + G G+
Sbjct: 232 LLANHLLPPPALNNIE-CSMVKMGFPFHKNEQEDTPALCQCHLEAAATESVHITTG-GFL 289
Query: 307 CPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTC 366
CP+CK++ CELP +CRICGL LVS+PHLARSYHHLFP+ F E T L D R TC
Sbjct: 290 CPQCKSKYCELPAECRICGLTLVSAPHLARSYHHLFPLDNFKE-THLLKGDTR-----TC 343
Query: 367 FGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
F CQ SS +Y C KCK+ FCL+CDI+IH +LH CPGC
Sbjct: 344 FSCQ----SSVEGQNMYT-CEKCKEEFCLDCDIFIHATLHLCPGC 383
>gi|156546970|ref|XP_001599241.1| PREDICTED: general transcription factor IIH subunit 2-like [Nasonia
vitripennis]
Length = 404
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 166/396 (41%), Positives = 245/396 (61%), Gaps = 32/396 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +++WEA++ED+ G L + A+ +R+L DR +R+ G++R+LY
Sbjct: 12 WETGY--EKTWEAIKEDDHGMLEASVADIIHKAKRKRQL-DRK---EGSRL--GMMRHLY 63
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
I++D S + D +P+R K +E F+ EFF QNP+SQ+G++ ++ A +TDL G
Sbjct: 64 IILDCSESMTNQDLKPTRFLCALKLLEDFIDEFFYQNPISQLGIIITRNKRAEKITDLTG 123
Query: 151 SPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P+ ++ L + + +G+ SLQN+L+L L +PS+ +E+L++ +L+TCDPGDI
Sbjct: 124 NPKKPLQDLKNLQQTSFTGEPSLQNSLELAAKTLKMLPSHASKEILLIMGSLTTCDPGDI 183
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
ETIQ K +RCSVIGL+AE+ ICK + +TGG + V LD+ HFKE + H PPPA
Sbjct: 184 GETIQSLKSDGVRCSVIGLAAELNICKIMAVNTGGEHGVVLDDKHFKEKLTAHVDPPPAA 243
Query: 269 AEFAIANLIKMGFPQRA-----GEGSISICSCHKEVK------VGVGYTCPRCKARVCEL 317
A L+KMGFP A E S+++C CH + GY CP+C ++ CEL
Sbjct: 244 TRLDAA-LVKMGFPHHALQASTTELSMAVCMCHADKPDESSRFTNPGYLCPQCLSKHCEL 302
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P +CR CGL LVS+PHLARSYH+LFPI F E + ++C+ CQ++ +
Sbjct: 303 PVECRGCGLTLVSAPHLARSYHYLFPIKHFKE-------EQYEGDPASCYACQKTFVELD 355
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 413
K +YV C KCK+ FCL+C+I+IHESLH CPGC +
Sbjct: 356 KK--VYV-CEKCKQTFCLDCEIFIHESLHTCPGCAT 388
>gi|426197578|gb|EKV47505.1| hypothetical protein AGABI2DRAFT_204710 [Agaricus bisporus var.
bisporus H97]
Length = 452
Score = 318 bits (815), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 167/405 (41%), Positives = 253/405 (62%), Gaps = 36/405 (8%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYL 89
WE SY RSWE +QEDE+G L+ + R R + L+A A I++ +IR++
Sbjct: 59 TWEASYT--RSWETVQEDEAGSLQTSVQ------ELMARGRRKRLLAPAAAIRRTIIRHV 110
Query: 90 YIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
+++DLS A + D RP+R ++ + F+ E+FDQNPL QIG+V ++ G+ + DL
Sbjct: 111 ILLLDLSSAMLDRDMRPTRFDLMLQYAREFILEWFDQNPLGQIGVVGMRAGLGERIGDLS 170
Query: 150 G---SPE---SHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTC 203
G +P+ S+IK KL +G+ SLQNA+++ + +S +P++ RE++I++ +L+TC
Sbjct: 171 GESGNPQEVLSYIKE-RHKLEPTGEPSLQNAIEMAKASMSHLPTHSSREIIIIFGSLTTC 229
Query: 204 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAP 263
DPG+I ET++ C ++K+R SV+ L+AEM IC+ L TGG + VA++E HFK+L+ E P
Sbjct: 230 DPGNIHETLETCVKNKVRISVVALAAEMKICRELSDKTGGQFGVAMNEGHFKDLLFELVP 289
Query: 264 PPP---------AIAEFAIANLIKMGFPQRAGEGSI-SICSCHKEVKVGVGYTCPRCKAR 313
PP A + A+L+ MGFP R E S ++C CH E+K G+ CPRC A+
Sbjct: 290 PPAQRALTRTMGAPSASLSADLMMMGFPTRLPEASAPTLCVCHAELK-SQGFLCPRCLAK 348
Query: 314 VCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL 373
VC++PTDC +CGL +VSSPHLARSYHHLFP+ P+D V L + + C GC +
Sbjct: 349 VCDVPTDCHVCGLMIVSSPHLARSYHHLFPVKPYDAVPNL---EDIPQPSDACHGCAKLF 405
Query: 374 LSSGNKP---GLYVA----CPKCKKHFCLECDIYIHESLHNCPGC 411
++ + P G+ V CP C+ FC +CD+++HE +H CPGC
Sbjct: 406 PTTTSIPIGEGVSVVGRYRCPDCRHDFCSDCDVFVHEVIHCCPGC 450
>gi|58331891|ref|NP_001011081.1| general transcription factor IIH, polypeptide 2, 44kDa [Xenopus
(Silurana) tropicalis]
gi|54038231|gb|AAH84471.1| general transcription factor IIH, polypeptide 2, 44kDa [Xenopus
(Silurana) tropicalis]
gi|115530769|emb|CAL49300.1| general transcription factor IIH polypeptide 4, 52kDa [Xenopus
(Silurana) tropicalis]
Length = 393
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 166/394 (42%), Positives = 240/394 (60%), Gaps = 32/394 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + + + +R +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEVLKEDESGSLKSTIDEILFKDKRKRIFENR------GQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+++D SR + D +P+R+ K +E FV E+FDQNP+SQIGL+ ++ A LT+L G
Sbjct: 63 VIVDSSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGLIVTRNKRAEKLTELAG 122
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P H+ AL + C+G+ SL N+L+L L +P + RE+L+++S+L+TCDP +I
Sbjct: 123 NPRQHLNALKKAVDMNCNGEPSLYNSLNLALQTLKHMPGHTSREILVIFSSLTTCDPTNI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
+ I+ K SKIR SVIGLSAE+ +C L ++TGG Y V LDESH+KEL+M H PPPA
Sbjct: 183 YDIIKCLKASKIRVSVIGLSAEVRVCTVLTRETGGVYHVILDESHYKELLMHHVIPPPA- 241
Query: 269 AEFAIANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCEL 317
+ + +LI+MGFPQ + S S+ + G+ GY CP+C+A+ EL
Sbjct: 242 SSTSECSLIRMGFPQHTMGCLSDQDAKPSFSMAHLDNTSEPGLTLGGYFCPQCRAKYSEL 301
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P +C++C L LVS+PHLARSYHHLFP+ F EV+ C GC L
Sbjct: 302 PVECKVCRLTLVSAPHLARSYHHLFPLDAFKEVSL-----EEYEGERYCRGCDGEL---- 352
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
K CP C+ FC+ECD++IHESLH CPGC
Sbjct: 353 -KDQQVYICPVCQCVFCIECDLFIHESLHCCPGC 385
>gi|156387918|ref|XP_001634449.1| predicted protein [Nematostella vectensis]
gi|156221532|gb|EDO42386.1| predicted protein [Nematostella vectensis]
Length = 400
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 159/390 (40%), Positives = 237/390 (60%), Gaps = 23/390 (5%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
W Y +++WEA++ED+ G L+ + + + ++ +R + A ++ G++R+LY
Sbjct: 15 WLSQY--EKTWEAIREDDEGSLQTLVDELVHRSKRQR------VAARPGNVRLGMMRHLY 66
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
I+ID+S+A E D +P+R++ AK +E F+ E+FDQNP+SQ+GL+ K+ A L++L G
Sbjct: 67 IIIDMSKAMEEADLKPNRLSCSAKLLENFITEYFDQNPISQLGLIITKNKRAEKLSELSG 126
Query: 151 SPESHIKALMGKLG--CSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P+ HI + C G+ SLQNAL L L +P + REVL+L +L++CDPGDI
Sbjct: 127 NPKLHISTIQSACSKPCVGEPSLQNALVLAMQSLKHMPGHVSREVLVLMGSLTSCDPGDI 186
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
ET++ K +RCS++GL+AEM +CK +C T GSY V LDE HFK+L+MEH PP A
Sbjct: 187 TETVKSLKNMNVRCSIVGLAAEMRVCKQICSSTNGSYRVVLDERHFKDLLMEHVIPPTAT 246
Query: 269 AEFAIANLIKMGFPQRAGEGSISICSCHKEVK-----VGVGYTCPRCKARVCELPTDCRI 323
+ L + F S+ H + K GY CP+C+++ C+LP +C++
Sbjct: 247 VRICLV-LWYVIFESYCYIHVFSVIRSHMDNKNIKEFTTKGYFCPQCRSKYCDLPVECKV 305
Query: 324 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 383
CGL LVS+PHLARSY HLFP+ + EV N P + CQ ++ K
Sbjct: 306 CGLTLVSAPHLARSYQHLFPLQQYTEV-----NVPAQIPGQPPWTCQACQITLTEKTA-- 358
Query: 384 VACPKCKKHFCLECDIYIHESLHNCPGCES 413
+CP+C+ FCL+CDIYIHESLH CPGC +
Sbjct: 359 CSCPECRHVFCLDCDIYIHESLHTCPGCTA 388
>gi|327263012|ref|XP_003216315.1| PREDICTED: general transcription factor IIH subunit 2-like [Anolis
carolinensis]
Length = 406
Score = 317 bits (813), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 167/394 (42%), Positives = 244/394 (61%), Gaps = 32/394 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEVLKEDESGSLKASVEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQ+G++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQVGIIITKGKRAEKLTELAG 122
Query: 151 SPESHIKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P HI AL + C+G+ SL NAL+L L +P + REVL+++S+L+TCDP +I
Sbjct: 123 NPRKHITALKKAVDMTCAGEPSLYNALNLATQTLKHMPGHTSREVLVIFSSLTTCDPSNI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
+ I+ K KIR SVIGLSAE+ +C L ++TGG+Y V LDESH++EL+M H PPPA
Sbjct: 183 YDLIKSLKMLKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYRELLMHHVSPPPAT 242
Query: 269 AEFAIANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCEL 317
+ + ++LI+MGFPQ + S S+ + G+ GY CP+C+A+ EL
Sbjct: 243 SG-SESSLIRMGFPQHTIASLTDQDAKPSFSMAHLENSSEPGLTLGGYFCPQCRAKYSEL 301
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P +C++CGL LVS+PHLARSYHHLFP+ F EV PL C GC + G
Sbjct: 302 PVECKVCGLTLVSAPHLARSYHHLFPLDAFQEV-PL----EEYTGERYCQGCHGGI---G 353
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
++ +Y+ C +C+ FC++CDI+ HE+LH CPGC
Sbjct: 354 DQ-HVYI-CKECQSGFCVDCDIFAHETLHCCPGC 385
>gi|409080664|gb|EKM81024.1| hypothetical protein AGABI1DRAFT_71744 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 452
Score = 317 bits (812), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 167/405 (41%), Positives = 252/405 (62%), Gaps = 36/405 (8%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYL 89
WE SY RSWE +QEDE+G L+ + R R + L+A A I++ +IR++
Sbjct: 59 TWEASYT--RSWETVQEDEAGSLQTSVQ------ELMARGRRKRLLAPAAAIRRTIIRHV 110
Query: 90 YIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
+++DLS A + D RP+R ++ + F+ E+FDQNPL QIG+V ++ G+ + DL
Sbjct: 111 ILLLDLSSAMLDRDMRPTRFDLMLQYAREFILEWFDQNPLGQIGVVGMRAGLGERIGDLS 170
Query: 150 G---SPE---SHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTC 203
G +P+ S+IK KL +G+ SLQNA+++ + +S +P++ RE++I++ +L+TC
Sbjct: 171 GESGNPQEVLSYIKE-RHKLEPTGEPSLQNAIEMAKASMSHLPTHSSREIIIIFGSLTTC 229
Query: 204 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAP 263
DPG+I ET++ C ++K+R SV+ L+AEM IC+ L TGG + VA++E HFK+L+ E P
Sbjct: 230 DPGNIHETLETCVKNKVRISVVALAAEMKICRELSDKTGGQFGVAMNEGHFKDLLFELVP 289
Query: 264 PPP---------AIAEFAIANLIKMGFPQRAGEGSI-SICSCHKEVKVGVGYTCPRCKAR 313
PP A + A+L+ MGFP R E S ++C CH E+K G+ CPRC A+
Sbjct: 290 PPAQRALTRTMGAPSASLSADLMMMGFPTRLPEASAPTLCVCHAELK-SQGFLCPRCLAK 348
Query: 314 VCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL 373
VC++PTDC +CGL +VSSPHLARSYHHLFP+ P+D V L + + C GC +
Sbjct: 349 VCDVPTDCHVCGLMIVSSPHLARSYHHLFPVKPYDAVPNL---EDIPQPSDACHGCAKLF 405
Query: 374 LSSGNKP---GLYVA----CPKCKKHFCLECDIYIHESLHNCPGC 411
+ + P G+ V CP C+ FC +CD+++HE +H CPGC
Sbjct: 406 PMTTSIPIGEGVSVVGRYRCPDCRHDFCSDCDVFVHEVIHCCPGC 450
>gi|321470853|gb|EFX81828.1| hypothetical protein DAPPUDRAFT_317251 [Daphnia pulex]
Length = 405
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 177/429 (41%), Positives = 253/429 (58%), Gaps = 49/429 (11%)
Query: 13 AEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDR 72
A+EEE +E WE Y +++WEA++ED+ G L N A A+ +R+ R
Sbjct: 2 ADEEETNE--------YRWESGY--EKTWEAIKEDDDGLLE--SNVAEIVARAKRK---R 46
Query: 73 SLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQI 132
+ + T IQ G++R+L++VID S D +P+R V K +E FV EFFD NP+SQ+
Sbjct: 47 AALKATGAIQLGMMRHLFVVIDASECMFLQDLKPTRFLCVLKLLELFVHEFFDLNPISQL 106
Query: 133 GLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGH 190
G++T K + ++ L G+ + HI+AL M C G+ SLQN+L+ L +P++
Sbjct: 107 GILTTKVKRSEQVSALAGNQKKHIEALQQMKDTSCEGEPSLQNSLERAMNGLKNMPAHSS 166
Query: 191 REVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALD 250
REVL+L+ +L+TCDPGDI +TI+ KE+ IR S+IGL+AE+ IC+ + + TGG+Y+V LD
Sbjct: 167 REVLVLFGSLTTCDPGDIQKTIKSLKENNIRVSIIGLAAEVRICREIAKRTGGTYNVLLD 226
Query: 251 ESHFKELIMEHAPPPPAIAEFAIANLIKMGFP-----------QRAGEGSISICSCHKEV 299
+ H KELI+ PPA+A A+L+KMGFP A + + + C CH E
Sbjct: 227 DHHLKELILNQV-QPPAVAGSMEASLVKMGFPGGKPGSSDGASDSAADHAPAYCLCHIEN 285
Query: 300 KVGV------GYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPL 353
+ GY CP+C +R CELP +C+ CGL LVS+PHLARSYHHLFPI PF E T +
Sbjct: 286 ETSCLMGNNSGYNCPQCGSRYCELPVECKQCGLTLVSAPHLARSYHHLFPIKPFIERTEV 345
Query: 354 CLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 413
+ CF C + P +Y C C + CL+CD++I E+LH CPGC
Sbjct: 346 -------PEMTHCFACAKPF--GELDPNVY-ECENCNQIVCLDCDLFIRETLHTCPGCA- 394
Query: 414 LRHSNPIVA 422
S+PI A
Sbjct: 395 ---SDPITA 400
>gi|395814688|ref|XP_003780876.1| PREDICTED: general transcription factor IIH subunit 2-like
[Otolemur garnettii]
Length = 395
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 164/394 (41%), Positives = 241/394 (61%), Gaps = 32/394 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P HI +L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHIASLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
+ I+ K +KIR S+IGLSAE+ +C L ++TGG+Y V LDESH+KEL+ + PPPA
Sbjct: 183 YDLIKTLKAAKIRVSIIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHYVSPPPAS 242
Query: 269 AEFAIANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCEL 317
+ +LI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 LN-SECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNSEPGLTLGGYFCPQCRAKYCEL 301
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P +C++CGL LVS+PHLARSYHHLFP+ F E+ PL + C+GCQ L
Sbjct: 302 PVECKVCGLTLVSAPHLARSYHHLFPLDAFQEI-PL----EEHHGERFCYGCQGDL---- 352
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
+YV C C+ FC++CD+++++SLH CPGC
Sbjct: 353 KDQHVYV-CNACQNVFCVDCDVFVYDSLHCCPGC 385
>gi|147906745|ref|NP_001085329.1| general transcription factor IIH, polypeptide 2, 44kDa [Xenopus
laevis]
gi|49256020|gb|AAH71091.1| MGC81060 protein [Xenopus laevis]
Length = 395
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 169/405 (41%), Positives = 244/405 (60%), Gaps = 35/405 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + + + +R +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEVLKEDESGSLKATIDEILFKDKRKRIFENR------GQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+++D SR + D +P+R+ K +E FV E+FDQNP+SQIGL+ ++ A LT+L G
Sbjct: 63 VIVDSSRTMEDQDLKPNRLTCTLKLLEFFVEEYFDQNPISQIGLIVTRNKRAEKLTELAG 122
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P HI A+ + CSG+ SL N+L+L L +P + RE+L+++S+L+TCDP +I
Sbjct: 123 NPRQHINAMKKAVDMTCSGEPSLYNSLNLALQTLKHMPGHTSREILVIFSSLTTCDPTNI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
+ I+ K SK+R SVIGLSAE+ +C L ++TGG Y V LDESH+KEL+M H PPPA
Sbjct: 183 YDMIKCLKASKVRVSVIGLSAEVRVCTVLTRETGGVYHVILDESHYKELLMHHVIPPPA- 241
Query: 269 AEFAIANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCEL 317
+ + +LI+MGFPQ + S S+ + G+ GY CP+CKA+ EL
Sbjct: 242 SSSSECSLIRMGFPQHTMGCLSDQDAKPSFSMAHLDNTSEPGLTLGGYFCPQCKAKYSEL 301
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P +C++C L LVS+PHLARSYHHLFP+ F EV + R C GC L
Sbjct: 302 PVECKVCRLTLVSAPHLARSYHHLFPLDAFKEVRLEEYDGER-----YCRGCDGEL---- 352
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLRHSNPIVA 422
K C C+ FC+ECD+++HESLH CPGC H+ P A
Sbjct: 353 -KDQQVYVCTVCQCVFCIECDLFVHESLHCCPGC---IHNQPTPA 393
>gi|336371442|gb|EGN99781.1| hypothetical protein SERLA73DRAFT_179993 [Serpula lacrymans var.
lacrymans S7.3]
gi|336384207|gb|EGO25355.1| hypothetical protein SERLADRAFT_465378 [Serpula lacrymans var.
lacrymans S7.9]
Length = 450
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 164/402 (40%), Positives = 249/402 (61%), Gaps = 32/402 (7%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYL 89
WE SY RSW+ +QEDE+G L+ + R R R L+A A I++ +IR+L
Sbjct: 59 TWEASYT--RSWDTVQEDEAGSLQGAVE------DWIARGRRRRLLAPAAAIRRTIIRHL 110
Query: 90 YIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
+++DLS + + D RP+R + + F+ E+FDQNPL QIG+V ++ G+ + ++
Sbjct: 111 ILLLDLSTSMMDRDMRPTRFDLTLEYAREFITEWFDQNPLGQIGVVGMRAGIGERIGEMS 170
Query: 150 GSPESHIKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 207
G+P+ +K++ + L +G+ SLQNA+D+ + +S +P++ RE+L+++ +L+TCDPG+
Sbjct: 171 GNPQDVLKSIADRHRLEPTGEPSLQNAVDMARSSMSHLPTHSSREILVIFGSLTTCDPGN 230
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPP- 266
I +T+ C ++KIR SV+ L+AEM IC+ LC TGG + VAL+E HFK+L+ E PPP
Sbjct: 231 IHDTLDACVKNKIRISVVALAAEMKICRELCDKTGGQFGVALNEGHFKDLLFELVPPPAQ 290
Query: 267 --------AIAEFAIANLIKMGFPQRAGEGS-ISICSCHKEVKVGVGYTCPRCKARVCEL 317
+ A A+L+ MGFP R + S S+C CH E+K G+ CPRC A+VC++
Sbjct: 291 RAMTRAAGSGATNPAADLMMMGFPTRLPDTSPASLCVCHSEMK-SEGFLCPRCMAKVCDV 349
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQ------ 371
PTDC ICGL +VSSPHLARSYHHLFP+ P+D + L + P + C C +
Sbjct: 350 PTDCDICGLMIVSSPHLARSYHHLFPVKPYDAIGSLA-DTP--DAGLACHACARIFPTTA 406
Query: 372 --SLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
S + G P CP+C FC +CD+++H+ +H CPGC
Sbjct: 407 LTSTSTEGMSPLNRYRCPECHNDFCGDCDVFVHDVVHCCPGC 448
>gi|50308759|ref|XP_454384.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643519|emb|CAG99471.1| KLLA0E09615p [Kluyveromyces lactis]
Length = 488
Score = 315 bits (806), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 173/404 (42%), Positives = 239/404 (59%), Gaps = 31/404 (7%)
Query: 24 LNGGLEAWERSYADD--RSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARI 81
+NGG AWE DD RSW+ ++ D+ G N A A + R+ T
Sbjct: 94 VNGGY-AWE----DDIQRSWDLVKVDDEG------NIAAIVASIVEARKKRAAEKTVTPY 142
Query: 82 QKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGV 141
Q+G+IR L +V+D S A E D RP+R A+ + F+ E+FDQNP+SQIG+V ++DG+
Sbjct: 143 QRGIIRTLILVLDCSEAMMEKDLRPNRYAMTVQYAVDFIHEYFDQNPISQIGVVVMRDGL 202
Query: 142 ANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSA 199
A ++ + G+P+ HI AL + + G++SLQNAL++ +GLL +P++ REVLI++ A
Sbjct: 203 AQLISQVSGNPQEHIDALKMLRRQEPKGNASLQNALEMARGLLLHVPAHCTREVLIVFGA 262
Query: 200 LSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDT----GGSYSVALDESHFK 255
LST DPGDI +TI IR VIGLSA++ +CK LC+ T Y + L++ HFK
Sbjct: 263 LSTTDPGDIHQTIGSLVHENIRAKVIGLSAQVSVCKELCKQTNYGDNSYYGIILNDHHFK 322
Query: 256 ELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVC 315
EL P P L+KMGFP R E + S C+CH + G GY CP CK +VC
Sbjct: 323 ELFTSAVTPLPVSKVNKGFTLVKMGFPTRVFEDTPSFCACHSTLVHG-GYVCPNCKTKVC 381
Query: 316 ELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLS 375
LPT C C L L+ S HLARSYHHL P+ F EV P+ + P + CFGCQ+ +
Sbjct: 382 SLPTVCPSCDLMLILSTHLARSYHHLMPLKTFQEV-PVSDSFPTD----YCFGCQKRFPT 436
Query: 376 -SGNKPGLYVA-----CPKCKKHFCLECDIYIHESLHNCPGCES 413
NK G + C +C + FC++CD++IHE+LHNCPGCES
Sbjct: 437 LRNNKTGELLTSSRYRCEECDQDFCIDCDVFIHETLHNCPGCES 480
>gi|351712123|gb|EHB15042.1| General transcription factor IIH subunit 2, partial [Heterocephalus
glaber]
Length = 392
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 168/394 (42%), Positives = 243/394 (61%), Gaps = 32/394 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ +R + +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFENH------GQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+A K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLACTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P HI +L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
+ I+ K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA
Sbjct: 183 YDLIKTLKAAKIRVSVIGLSAEVRVCTALARETGGTYHVILDESHYKELLTHHVSPPPAS 242
Query: 269 AEFAIANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCEL 317
+ +LI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDNSSEPGLTLGGYFCPQCRAKYCEL 301
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P +C+ICGL LVS+PHLARSYHHLFP+ F E+T + C+GCQ L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEMTL-----EEYKGERFCYGCQGQL---- 352
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
+YV C +C+ FC++CD+++H+SLH CPGC
Sbjct: 353 KDQHVYV-CAECQNVFCVDCDVFVHDSLHCCPGC 385
>gi|31418653|gb|AAH53382.1| General transcription factor II H, polypeptide 2 [Mus musculus]
Length = 396
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 164/396 (41%), Positives = 241/396 (60%), Gaps = 35/396 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDE+G L+ + A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDETGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P HI +L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
+ I+ K +KIR SVIGLSAE+ +C L ++TGG+Y V LDE+H+KEL+ H P PA
Sbjct: 183 YDLIKTLKTAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDETHYKELLAHHVSPLPA- 241
Query: 269 AEFAIANLIKMGFPQRA--------GEGSISIC-----SCHKEVKVGVGYTCPRCKARVC 315
+ + +LI+MGFPQ + S S+ S + +G GY CP+C+A+ C
Sbjct: 242 SSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDNNSTEPGLTLG-GYFCPQCRAKYC 300
Query: 316 ELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLS 375
ELP +C+ICGL LVS+PHLARSYHHLFP+ F E++ + C+GCQ L
Sbjct: 301 ELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEISL-----EEYKGERFCYGCQGEL-- 353
Query: 376 SGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
+YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 354 --KDQHVYV-CTVCQNVFCVDCDVFVHDSLHCCPGC 386
>gi|73949709|ref|XP_535266.2| PREDICTED: general transcription factor IIH subunit 2 isoform 1
[Canis lupus familiaris]
Length = 395
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 171/394 (43%), Positives = 244/394 (61%), Gaps = 32/394 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P HI +L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
+ I+ K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA
Sbjct: 183 YDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPAS 242
Query: 269 AEFAIANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCEL 317
+ +LI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCEL 301
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P +C+ICGL LVS+PHLARSYHHLFP+ PF E+ PL + N R C+GCQ L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDPFQEI-PL---EEHNGER-FCYGCQGEL---- 352
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
+YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 KDQHVYV-CAVCQNVFCVDCDVFVHDSLHCCPGC 385
>gi|346716173|ref|NP_001231240.1| general transcription factor IIH subunit 2 [Sus scrofa]
Length = 395
Score = 314 bits (804), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 170/394 (43%), Positives = 246/394 (62%), Gaps = 32/394 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ +R ++ +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKR------VIEHHGQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P HI +L + C+G+ SL N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCNGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
+ I+ K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA
Sbjct: 183 YDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPAS 242
Query: 269 AEFAIANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCEL 317
+ +LI+MGFPQ + S S+ + G+ GY CP+C+AR CEL
Sbjct: 243 SSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRARYCEL 301
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P +C+ICGL LVS+PHLARSYHHLFP+ F E+ PL + N R C+GCQ L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-PL---EEHNGER-FCYGCQGEL---- 352
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
+Y+ C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 KDQHVYI-CSVCQHVFCVDCDVFVHDSLHCCPGC 385
>gi|328858838|gb|EGG07949.1| hypothetical protein MELLADRAFT_35246 [Melampsora larici-populina
98AG31]
Length = 455
Score = 313 bits (802), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 168/417 (40%), Positives = 250/417 (59%), Gaps = 48/417 (11%)
Query: 25 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKG 84
+G AWE Y RSW+ ++ED+SG L N A R+R+ + T IQ+G
Sbjct: 55 DGQGYAWEDEYK--RSWDNVREDDSGSLEGAVNQLM--ANKRKRI-----IRDTTSIQRG 105
Query: 85 LIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 144
+IR+L +VIDLS A + D RP+R+ + + FV EFFDQNP+SQ+ + KD +A
Sbjct: 106 IIRHLCLVIDLSLAMTDRDLRPNRLEMSLNYAQEFVTEFFDQNPISQMCIFITKDAIAER 165
Query: 145 LTDLGGSPESHIKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALST 202
L+ L G+P H KAL K L SG+ SLQNAL++ + L+ +P +G +E L++ +L+T
Sbjct: 166 LSPLSGNPVDHHKALSNKRKLEPSGEPSLQNALEMARATLAHLPPHGSKETLVIMGSLTT 225
Query: 203 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHA 262
CDP DI +TI+K ++ ++R S++GLSAE+ ICK +C+ T G Y V ++E+HFKEL+ E
Sbjct: 226 CDPEDIHKTIEKLEKDRMRVSIVGLSAEINICKEICRKTKGKYGVIMNETHFKELLFESI 285
Query: 263 PPPPAIAEFAI-----------ANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCK 311
PPPP++ + ++L++MGFP + S+C+CH ++K G+ CPRC
Sbjct: 286 PPPPSLVNSSTSQSNRSTNTTSSDLMQMGFPTKLSNPIPSLCACHSKLK-SSGFICPRCG 344
Query: 312 ARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRS---RSTCFG 368
+++C++PTDC ICGL +VSSPHLARSY HLFP+A + E+ D N ++C+G
Sbjct: 345 SKLCDVPTDCLICGLTVVSSPHLARSYRHLFPVANWKEI------DSENHEIECPTSCYG 398
Query: 369 CQQSL--------------LSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
C Q + N+ ++ C +CK FC CD++ HE L CPGC
Sbjct: 399 CSQVFSTSSTTTTTTTTTTTTITNQSSKFM-CNRCKHIFCSTCDLF-HEQLGLCPGC 453
>gi|118344316|ref|NP_001071980.1| zinc finger protein [Ciona intestinalis]
gi|92081522|dbj|BAE93308.1| zinc finger protein [Ciona intestinalis]
Length = 395
Score = 313 bits (802), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 171/410 (41%), Positives = 247/410 (60%), Gaps = 45/410 (10%)
Query: 16 EEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLV 75
EE+ ED WE Y +++WEAL+EDE+G L+ + A+ +RRL+ R
Sbjct: 2 EEQGEDKAYR-----WEGDY--EKTWEALKEDETGSLQASIEAEINKAK-KRRLQQRQ-- 51
Query: 76 ATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLV 135
++ G++R+LY+V+DLS+A + D +P+R V K +E F +FFDQNP+SQ+G V
Sbjct: 52 ---RNVRLGMMRHLYVVVDLSQAMCDQDLKPNRAVAVLKALEIFSEKFFDQNPISQLGFV 108
Query: 136 TVKDGVANCLTDLGGSPESHIKALMGKLG----------CSGDSSLQNALDLVQGLLSQI 185
+ A L+D+ GS + HIK L LG C+G+ SLQN+L+L L +
Sbjct: 109 STCAKRAEVLSDMSGSLQKHIKVLQD-LGQKIIKTNAKHCTGEPSLQNSLELCAKSLKHM 167
Query: 186 PSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSY 245
PS+ +E+L++ +L+TCDPG I +TI + + IRCSVIGLSAE+ ICK+L + T G++
Sbjct: 168 PSHTSKEILVVMGSLTTCDPGSIHDTITQIAKQSIRCSVIGLSAEVHICKYLAKSTKGTF 227
Query: 246 SVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAG---EGSISICSCHKEVKVG 302
+ LDESHF +L+ +H PPP I+ ++LIKMGFP G IS+C VG
Sbjct: 228 GIILDESHFADLLTDHVPPPAEIS--PESSLIKMGFPHHVSPHESGKISLCMSRNTFTVG 285
Query: 303 VGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEV-TPLCLNDPRNR 361
GY CP+C+A+ ELP C IC L LVS+PHLARSYHH FP+ F E P+
Sbjct: 286 -GYFCPQCQAKYSELPVQCVICALTLVSAPHLARSYHHFFPLPMFKEQEVPV-------- 336
Query: 362 SRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
TC+ C + + ++ YV C +C FC++C+ +IHE+LH+CPGC
Sbjct: 337 GSLTCYSCCKPITTAT-----YV-CEQCAISFCMDCNAFIHETLHSCPGC 380
>gi|412993157|emb|CCO16690.1| predicted protein [Bathycoccus prasinos]
Length = 452
Score = 313 bits (802), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 183/440 (41%), Positives = 247/440 (56%), Gaps = 48/440 (10%)
Query: 8 RLNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRP----IDNSA---F 60
R AEEEE L+A+E+ Y +R+WE L ED G LR D S F
Sbjct: 21 RYEFTAEEEE--------NALKAYEKRYQKERTWEDLTEDAEGNLRSSSLEKDRSQRRRF 72
Query: 61 YHAQYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFV 120
+ R+++ A+ +R+ KG+IRY Y+++DLS A D RP+R AV+ + FV
Sbjct: 73 LANEKRKKIEKE---ASQSRVAKGMIRYCYVILDLSDAIHVEDMRPNRSAVLLPLMIKFV 129
Query: 121 REFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKL---GCSGDSSLQNALDL 177
REFF+QNPLSQ+GL+ KDG A +T+L GSPE+H+KA+ G G SLQN L+
Sbjct: 130 REFFNQNPLSQLGLIACKDGKAERITELSGSPETHVKAIKKAFASDGVGGSFSLQNGLEQ 189
Query: 178 VQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHL 237
L +P +G RE++ + S+LSTCDPG+I ++++K K+ K R +VI ++AE + K L
Sbjct: 190 AMEGLRDVPPFGAREIIAIISSLSTCDPGNINDSVRKVKKMKARTNVICVAAETRVFKKL 249
Query: 238 CQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRA------GEGSIS 291
++T G +SV+LD+SH LIME APPP + E A L++MGFP+R G G
Sbjct: 250 SEETKGKFSVSLDQSHLTRLIMECAPPPALLLETAKPALVEMGFPRREPRKFGLGAGDED 309
Query: 292 ICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVT 351
Y CPRC+AR ELP+ C C L LVSSPHLARSYHHLFP+ PF EV
Sbjct: 310 DRDVLTIGPRNGEYRCPRCEARAEELPSQCGTCQLSLVSSPHLARSYHHLFPVMPFVEVK 369
Query: 352 ------------------PLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHF 393
+D + CFGC + +S G+ C KC+K F
Sbjct: 370 VDGDSKNEEEEEKKRKKNSGKDDDDDGQFLRECFGCCVVVDAS---TGMLSKCLKCEKEF 426
Query: 394 CLECDIYIHESLHNCPGCES 413
C CD+YIH+ LHNC GC S
Sbjct: 427 CFACDVYIHDRLHNCVGCLS 446
>gi|3327882|dbj|BAA31745.1| SSL1 [Schizosaccharomyces pombe]
Length = 392
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 167/394 (42%), Positives = 233/394 (59%), Gaps = 25/394 (6%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYL 89
WE Y RSW+ +QED G L + + +R LRD T +Q+G+IR++
Sbjct: 9 TWEGEY--QRSWDIVQEDAEGSLVGVIAGLIQSGKRKRLLRD------TTPLQRGIIRHM 60
Query: 90 YIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
+V+DLS + E DF R + K FV EFF+QNP+SQ+ ++ V DG+A+ +TDL
Sbjct: 61 VLVLDLSNSMEERDFHHKRFDLQIKYASEFVLEFFEQNPISQLSIIGVMDGIAHRITDLH 120
Query: 150 GSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIM 209
G+P+SHI+ L CSG+ SLQNAL++ + LS I S+G REVLI++ ++ + DPGDI
Sbjct: 121 GNPQSHIQKLKSLRDCSGNFSLQNALEMARASLSHIASHGTREVLIIFGSILSSDPGDIF 180
Query: 210 ETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS----YSVALDESHFKELIMEHAPPP 265
+TI IR ++GL+AE+ ICK +C T S Y V + E HF+EL++E PP
Sbjct: 181 KTIDALVHDSIRVRIVGLAAEVAICKEICNKTNSSTKNAYGVVISEQHFRELLLESTIPP 240
Query: 266 PA-IAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRIC 324
A+ A+L+ MGFP + E S+C+CH G G+ CPRCKA+VC LP +C C
Sbjct: 241 ATDSAKTTDASLVMMGFPSKVVEQLPSLCACHSIPSRG-GFHCPRCKAKVCTLPIECPSC 299
Query: 325 GLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKP---- 380
L L+ S HLARSYHHLFP+ + E+ P N P++ + CF CQ P
Sbjct: 300 SLVLILSTHLARSYHHLFPLKNWSEI-PWSAN-PKS---THCFACQLPFPKPPVSPFDES 354
Query: 381 --GLYVACPKCKKHFCLECDIYIHESLHNCPGCE 412
+ ACP CK HFCL+CD++ HE LH C GC+
Sbjct: 355 TSSMRYACPSCKNHFCLDCDVFAHEQLHECYGCQ 388
>gi|355693895|gb|AER99488.1| proteinral transcription factor IIH, polypeptide 2, 44kDa [Mustela
putorius furo]
Length = 393
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 168/394 (42%), Positives = 241/394 (61%), Gaps = 32/394 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ +R +++ G++R+LY
Sbjct: 10 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 61
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 62 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 121
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P HI +L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 122 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 181
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
+ I+ K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA
Sbjct: 182 YDLIKTLKSAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPAS 241
Query: 269 AEFAIANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCEL 317
+ +LI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 242 SSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCEL 300
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P +C+ICGL LVS+PHLARSYHHLFP+ F E+ PL + C+GCQ L
Sbjct: 301 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-PL----EEHNGEKFCYGCQGEL---- 351
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
+YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 352 KDQHVYV-CAVCQNVFCVDCDVFVHDSLHCCPGC 384
>gi|332233766|ref|XP_003266076.1| PREDICTED: general transcription factor IIH subunit 2 isoform 1
[Nomascus leucogenys]
Length = 395
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 169/394 (42%), Positives = 242/394 (61%), Gaps = 32/394 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P HI +L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
+ I+ K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA
Sbjct: 183 YDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPAS 242
Query: 269 AEFAIANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCEL 317
+ +LI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SSSE-CSLIRMGFPQHTNASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCEL 301
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P +C+ICGL LVS+PHLARSYHHLFP+ F E+ L + N R C+GCQ L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEI----LLEEHNGER-FCYGCQGEL---- 352
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
+YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 KDQHVYV-CAVCQNVFCVDCDVFVHDSLHCCPGC 385
>gi|449541165|gb|EMD32151.1| hypothetical protein CERSUDRAFT_119123 [Ceriporiopsis subvermispora
B]
Length = 445
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 164/402 (40%), Positives = 245/402 (60%), Gaps = 32/402 (7%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYL 89
AWE +Y RSW+ +QEDE+G L+ + R L+A + I++ +IR+L
Sbjct: 54 AWEAAYT--RSWDTVQEDEAGSLQGAVQELIARGRRR------RLLAPASAIRRTIIRHL 105
Query: 90 YIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
+VIDLS + + D RP+R ++ + F+ E+FDQNPL QIG+V ++ G+ + ++
Sbjct: 106 ILVIDLSSSMMDRDMRPTRFDLMLQYAREFIIEWFDQNPLGQIGIVGMRSGLGERIGEMT 165
Query: 150 GSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 207
G+P+ +KA+ KL G+ SLQNA+D+ + +S +P + RE+ I++ +L+TCDPG+
Sbjct: 166 GNPQEVLKAISERHKLEPGGEPSLQNAIDMARSSMSHLPVHSSREITIIFGSLTTCDPGN 225
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 267
I +T++ C + +IR S++ L+AEM IC+ LC TGG + VAL+E HFK+L+ E PPP A
Sbjct: 226 IHDTLEDCIKDRIRISIVALAAEMKICRDLCDKTGGQFGVALNEGHFKDLLFELIPPPVA 285
Query: 268 IA--------EFAIANLIKMGFPQRAGEGS-ISICSCHKEVKVGVGYTCPRCKARVCELP 318
A A+L+ MGFP R + S +C CH ++K G+ CPRC+A+VC++P
Sbjct: 286 RALARTGGAPANPAADLMIMGFPTRLPDTSPPGLCVCHSKLK-SEGFLCPRCRAKVCDVP 344
Query: 319 TDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL----- 373
TDC ICGL +VSSPHLARSYHHLFP+ + V + L D N + S C GC +
Sbjct: 345 TDCDICGLMIVSSPHLARSYHHLFPVKAYQAV--ISLEDTPNPAPS-CHGCSTAFREAAP 401
Query: 374 ----LSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
S G P CP C FC +CD+++H+ +H CPGC
Sbjct: 402 AMANTSDGMSPLGRYRCPDCHNDFCTDCDVFVHDVVHCCPGC 443
>gi|301760269|ref|XP_002915938.1| PREDICTED: general transcription factor IIH subunit 2-like
[Ailuropoda melanoleuca]
Length = 395
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 167/394 (42%), Positives = 241/394 (61%), Gaps = 32/394 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQ+G++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQVGIIVTKSKRAEKLTELSG 122
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P HI +L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
+ I+ K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA
Sbjct: 183 YDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPAS 242
Query: 269 AEFAIANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCEL 317
+ +LI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCEL 301
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P +C+ICGL LVS+PHLARSYHHLFP+ F E+ PL + C+GCQ L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-PL----EEHNGEKFCYGCQGEL---- 352
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
+YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 KDQHVYV-CAVCQTVFCVDCDVFVHDSLHCCPGC 385
>gi|366992932|ref|XP_003676231.1| hypothetical protein NCAS_0D02890 [Naumovozyma castellii CBS 4309]
gi|342302097|emb|CCC69870.1| hypothetical protein NCAS_0D02890 [Naumovozyma castellii CBS 4309]
Length = 485
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 177/426 (41%), Positives = 249/426 (58%), Gaps = 30/426 (7%)
Query: 3 NSERKRLNGEAEEEEEDEDDNL---NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSA 59
N+ R+RL+ +++ + NL NGG AWE RSW+ + DE + + S
Sbjct: 70 NASRRRLSHNRKKKAASGNKNLLGANGGY-AWEDEIK--RSWDLVTVDEENDMASLVASI 126
Query: 60 FYHAQYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAF 119
+ R++ + +V Q+G+IR L + +D S A E D RP+R A++ + F
Sbjct: 127 I---EARKKRTAKKIVTP---YQRGIIRTLILTLDCSEAMVEKDLRPTRHAMMIQYAIDF 180
Query: 120 VREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDL 177
+ EFFDQNP+SQIG+V +++G+A+ ++ + G+P+ HI AL + K +G+ SLQNAL++
Sbjct: 181 IHEFFDQNPISQIGIVIMRNGLAHLVSQVSGNPQDHIDALKAIRKQEPAGNPSLQNALEM 240
Query: 178 VQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHL 237
+GLL +P++ REVLI++ +LS+ DPGDI +TI + KIR VIGLSA++ ICK L
Sbjct: 241 ARGLLLPVPAHCTREVLIIFGSLSSTDPGDIHQTINSLVQEKIRVKVIGLSAQVAICKEL 300
Query: 238 CQDTG----GSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISIC 293
C+ T Y + LDE+HFKEL E P P L+KMGFP R E + S C
Sbjct: 301 CKATNYGDDSFYKILLDETHFKELFDEAVTPLPVNKINKGFTLVKMGFPTRIFEDTPSFC 360
Query: 294 SCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPL 353
+CH ++ G GY CP C ++VC LPT C C L L+ S HLARSYHHL P+ F EV P
Sbjct: 361 ACHSKLVYG-GYFCPSCHSKVCSLPTVCPCCDLMLILSTHLARSYHHLMPLKTFVEV-PA 418
Query: 354 CLNDPRNRSRSTCFGCQQSL-LSSGNKPGLYVA-----CPKCKKHFCLECDIYIHESLHN 407
P CF CQ + K G + C CKK FC++CD++IHE LHN
Sbjct: 419 TETFP----TENCFSCQLVFPILKNQKTGKLLTSSRYRCDSCKKDFCIDCDVFIHEILHN 474
Query: 408 CPGCES 413
CPGCES
Sbjct: 475 CPGCES 480
>gi|291000862|ref|XP_002682998.1| RNA polymerase II transcription factor TFIIH subunit [Naegleria
gruberi]
gi|284096626|gb|EFC50254.1| RNA polymerase II transcription factor TFIIH subunit [Naegleria
gruberi]
Length = 349
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 155/338 (45%), Positives = 217/338 (64%), Gaps = 19/338 (5%)
Query: 81 IQKGLIRYLYIVIDLSRA---AAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTV 137
I+KG+IR+LY+VID S ++ D + SR V + F++E+FDQNPLSQ+G++T
Sbjct: 23 IKKGIIRFLYLVIDCSNGIMLPSQHDEKTSRAQSVISTAKEFIKEYFDQNPLSQLGIITT 82
Query: 138 KDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILY 197
K+GVA L +L G+ + + L G GD SLQN L+L L QIP+YG +EV+++Y
Sbjct: 83 KNGVAKILKELTGNVKQLVSELKKSFG--GDPSLQNVLNLSYDSLHQIPNYGSKEVVVIY 140
Query: 198 SALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKEL 257
+LS+CDP +I TI++ K++ IR S+I L AE+F+CK + + T G+YSV D+ HFKE+
Sbjct: 141 CSLSSCDPDNIFSTIKQLKDNNIRVSLISLDAEVFVCKQIAKQTQGTYSVPTDDEHFKEV 200
Query: 258 IMEHAP----PPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKAR 313
+M HA + + ++MGFPQR + S+C CHK++ G GY CPRCK++
Sbjct: 201 LMAHAAPPPTTSSSSTKIVAPPSMRMGFPQRRAQTLYSMCLCHKKITPG-GYICPRCKSK 259
Query: 314 VCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL 373
C+LP +C CGL LVSSPHLARSYHHLFP+ F + PR C+GCQ+SL
Sbjct: 260 YCDLPVECSTCGLMLVSSPHLARSYHHLFPVQQFIDY------QPREGEEPYCYGCQKSL 313
Query: 374 LSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
+ + + CP C FC+ECD +IHESLHNCPGC
Sbjct: 314 ---PKESFISLQCPSCSNIFCVECDAFIHESLHNCPGC 348
>gi|348569038|ref|XP_003470305.1| PREDICTED: general transcription factor IIH subunit 2-like [Cavia
porcellus]
Length = 395
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 169/394 (42%), Positives = 241/394 (61%), Gaps = 32/394 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+VID SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVIDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P HI +L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAIDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
+ I+ K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA
Sbjct: 183 YDLIKTLKAAKIRVSVIGLSAEVRVCTALARETGGTYHVILDESHYKELLTHHVSPPPAS 242
Query: 269 AEFAIANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCEL 317
+ +LI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SSSE-CSLIRMGFPQHTIAALSDQDAKPSFSMAHLDSSSEPGLTLGGYFCPQCRAKYCEL 301
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P +C+ICGL LVS+PHLARSYHHLFP+ F E+ PL + C+GCQ L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-PL----EEYKGERFCYGCQGQL---- 352
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
+YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 KDQHVYV-CTVCQNVFCVDCDVFVHDSLHCCPGC 385
>gi|170035936|ref|XP_001845822.1| TFIIH basal transcription factor complex p44 subunit [Culex
quinquefasciatus]
gi|167878421|gb|EDS41804.1| TFIIH basal transcription factor complex p44 subunit [Culex
quinquefasciatus]
Length = 411
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 158/398 (39%), Positives = 241/398 (60%), Gaps = 34/398 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +++WEA++ED+ G + A+ +R+ + + G++R+LY
Sbjct: 12 WETGY--EKTWEAIKEDDDGLVEGSIAEIIQKAKRKRQAMKKGFS------KLGMMRHLY 63
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+++D S A + D +P+R+ K +E F+ EFFDQNP+SQ+G++ +K A +T+LGG
Sbjct: 64 VILDCSEAMSVPDLKPTRLLCTLKLLEIFIEEFFDQNPISQLGVIAMKAKRAEKITELGG 123
Query: 151 SPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
S HIKA+ + KL +G+ SLQN L+L L +PS+ RE+L++ +L+TCDP DI
Sbjct: 124 SCRKHIKAVGNLNKLNLTGEPSLQNGLELALKTLKMVPSHASREILVVMGSLTTCDPTDI 183
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA- 267
TI K IRCSV+ LSAE+ +CK LC +TGG Y LD+SHFK+ +++H PP A
Sbjct: 184 HITIDALKSEGIRCSVVSLSAEIRVCKFLCTETGGVYGAVLDDSHFKDQLLQHIDPPQAG 243
Query: 268 -IAEFAIANLIKMGFPQ-RAGEGS---ISICSCHKEVK------VGVGYTCPRCKARVCE 316
EF+ +IKMGFP + EG +++C CH + GY CP+C ++ CE
Sbjct: 244 NQQEFS---MIKMGFPHGKTEEGKDPPLTMCMCHIDSTDEPSKLTSGGYHCPQCYSKYCE 300
Query: 317 LPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSS 376
LP +C CGL L S+PHLARSYHHLFP+ + E+ P + + C+GCQ+ L
Sbjct: 301 LPVECTACGLTLASAPHLARSYHHLFPVPHYQEL-------PFQQQATNCYGCQK-LFGE 352
Query: 377 GNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESL 414
+Y C C++ FC++CDI++HE++H+C GC ++
Sbjct: 353 TTDKTIY-QCATCRQFFCIDCDIFVHETMHSCVGCTTI 389
>gi|392569356|gb|EIW62529.1| TFIIH basal transcription factor complex subunit SSL1 [Trametes
versicolor FP-101664 SS1]
Length = 452
Score = 311 bits (796), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 164/429 (38%), Positives = 256/429 (59%), Gaps = 43/429 (10%)
Query: 5 ERKRLNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQ 64
+RK+ G+++ +E+ AWE +Y RSW+ +QEDE+G +R +
Sbjct: 43 KRKQDKGKSKAKEQGY---------AWEATYV--RSWDTVQEDEAGSIRGSVQDLIARGR 91
Query: 65 YRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFF 124
R L+A A I++ +IR L +V+DLS A + D RP+R ++ + FV E+F
Sbjct: 92 RR------RLLAPAAAIRRTIIRQLVLVLDLSAAMLDRDMRPTRFDLMLQYAREFVTEWF 145
Query: 125 DQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLL 182
DQNPL QIG+ ++ G+ + ++ G+P+ +KA+ +L +G+ SLQNA+++ + +
Sbjct: 146 DQNPLGQIGIAGMRGGLGERIGEMSGNPQDVLKAISERHRLEPNGEPSLQNAIEMARSSM 205
Query: 183 SQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG 242
S +P++ RE+L+++ +L+TCDPG+I +T+ +C + +IR S++ L+AEM IC+ LC TG
Sbjct: 206 SHLPTHSSREILVIFGSLTTCDPGNIHDTMDECVKDRIRISIVALAAEMKICRDLCDKTG 265
Query: 243 GSYSVALDESHFKELIMEHAPPPP---------AIAEFAIANLIKMGFPQRAGEGS-ISI 292
G +SV ++E HFK+L+ E PPP + A+L+ MGFP R + S S+
Sbjct: 266 GQFSVVMNEGHFKDLLFELIPPPAQRAVARTGSGVTANPAADLMIMGFPMRLPDTSPPSL 325
Query: 293 CSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTP 352
C CH ++K G+ CPRC A+VC++PTDC ICGL +VSSPHLARSYHHLFP+ + V
Sbjct: 326 CVCHSQMK-SEGFLCPRCLAKVCDVPTDCDICGLMIVSSPHLARSYHHLFPVKAYQAVN- 383
Query: 353 LCLNDPRNRSRSTCFGCQQSLLSS----------GNKPGLYVACPKCKKHFCLECDIYIH 402
L D N S+ C GC + + G P CP+C FC +CD+++H
Sbjct: 384 -TLEDTLNPSKQ-CHGCSVAFRGTPSVVAGASGEGMSPFGRYRCPECHNDFCTDCDVFVH 441
Query: 403 ESLHNCPGC 411
+ +H CPGC
Sbjct: 442 DVVHCCPGC 450
>gi|331241057|ref|XP_003333178.1| hypothetical protein PGTG_14725 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309312168|gb|EFP88759.1| hypothetical protein PGTG_14725 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 462
Score = 311 bits (796), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 173/417 (41%), Positives = 249/417 (59%), Gaps = 51/417 (12%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYL 89
+WE Y RSW+ L+EDESG L N A RRR+ + T IQ+G+IR+L
Sbjct: 61 SWEEEYK--RSWDVLREDESGSLESAVNQLI--ANKRRRV-----IRDTTSIQRGIIRHL 111
Query: 90 YIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
++ID+S A + D RP+R+ + + FV EFFDQNP+SQ+ ++ KD +A L+ L
Sbjct: 112 CLIIDVSLAMTDRDLRPNRLDMSLTYAKEFVTEFFDQNPISQLCILITKDAIAERLSGLS 171
Query: 150 GSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 207
G+P H KAL KL SG+ SLQN+L++ + LS +PS+G REVL+++ +L+TCDP D
Sbjct: 172 GNPLDHHKALSNKAKLTPSGEPSLQNSLEMARASLSHLPSHGSREVLVIFGSLTTCDPDD 231
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 267
I +T++ ++ ++R S++GL+AE+ ICK +C+ T G Y V L+E HFKEL+ E PPP
Sbjct: 232 INKTLENLEKDRMRVSMVGLAAEVRICKEICKRTQGQYGVILNEHHFKELLFEAISPPP- 290
Query: 268 IAEFAI-------ANLIKMGFPQR-------AGEGSISICSCHKEVKVGVGYTCPRCKAR 313
IA+ ++LI+MGFP + + S C+CH +++ G+ CPRC ++
Sbjct: 291 IAKSTTNGPKTQSSSLIQMGFPNKITHDAHQVDASTHSFCACHSKLQ-STGFICPRCGSK 349
Query: 314 VCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL 373
CE+PT+C +CGL +VSSPHLARSY HLFP++ + E L+ + CFGC + L
Sbjct: 350 NCEIPTNCSVCGLTIVSSPHLARSYRHLFPVSNWIEKNANSLSHQTFK----CFGCDKEL 405
Query: 374 ----LSSGN--------------KPGLYV-ACPKCKKHFCLECDIYIHESLHNCPGC 411
S N P + + CP+CK FC ECDIY HE L CPGC
Sbjct: 406 QVNKASQTNDESNGNSNNATNANNPSINLYHCPRCKNMFCYECDIY-HEQLGLCPGC 461
>gi|302916479|ref|XP_003052050.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256732989|gb|EEU46337.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 469
Score = 310 bits (795), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 178/416 (42%), Positives = 244/416 (58%), Gaps = 50/416 (12%)
Query: 30 AWERSYADDRSWEA--LQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIR 87
AWE+S R+WE +ED+ G L +A + +R LRD T +Q+G+IR
Sbjct: 48 AWEKS---KRTWETNLPEEDQDGLL---SLTALEAEKRKRLLRD------TTPLQRGIIR 95
Query: 88 YLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTD 147
+L +V+D+S A AE D P+R + + AFVREFF+QNP+SQ+G++ ++DGVA ++D
Sbjct: 96 HLVLVLDMSFAMAEKDLLPTRYRLTLRYAAAFVREFFEQNPISQLGIIGMRDGVAVRISD 155
Query: 148 LGGSPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDP 205
+GG+P H++ L G G+ SLQNAL++ +G L PS+G REVLI+Y AL + DP
Sbjct: 156 VGGNPAEHLERLKGLEDQDPQGNPSLQNALEMCRGALFHAPSHGTREVLIIYGALLSSDP 215
Query: 206 GDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS----YSVALDESHFKELIMEH 261
GDI ET+ +IR S++GLSA++ IC LC T Y+VA+DE HF+EL +
Sbjct: 216 GDIHETVGNLITDRIRVSIVGLSAQVAICADLCSRTNAGDESQYNVAMDEVHFRELFLAA 275
Query: 262 APPPPA-IAEFAIANLIKMGFPQRA--GEGSISICSCHKEVKVGVGYTCPRCKARVCELP 318
PP AE + A+L+ MGFP R G S C+CH GY C RC ARVC LP
Sbjct: 276 TTPPVTRTAEQSTASLLMMGFPSRTLVAGGDTSYCACHNR-PFREGYLCTRCSARVCRLP 334
Query: 319 TDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRS-TCFGCQQSLL--- 374
+C CGL L+ S HLARSYHHLFP+ + EV P N +RS CF CQ
Sbjct: 335 AECPACGLTLILSTHLARSYHHLFPLRNWVEV-PWA-----NAARSAACFSCQAPFPEPP 388
Query: 375 ----------SSGNKPGLYV------ACPKCKKHFCLECDIYIHESLHNCPGCESL 414
+G KP V AC C++HFC++CD++ HE +HNCPGC+S+
Sbjct: 389 KTKAPDKPKEDAGPKPAKGVSESGRYACEVCRQHFCIDCDVFAHEVIHNCPGCQSI 444
>gi|386780666|ref|NP_001247509.1| general transcription factor IIH subunit 2 [Macaca mulatta]
gi|297675411|ref|XP_002815673.1| PREDICTED: general transcription factor IIH subunit 2 isoform 2
[Pongo abelii]
gi|297675413|ref|XP_002815674.1| PREDICTED: general transcription factor IIH subunit 2 isoform 3
[Pongo abelii]
gi|402871770|ref|XP_003899824.1| PREDICTED: general transcription factor IIH subunit 2 isoform 1
[Papio anubis]
gi|402871772|ref|XP_003899825.1| PREDICTED: general transcription factor IIH subunit 2 isoform 2
[Papio anubis]
gi|355691370|gb|EHH26555.1| General transcription factor IIH polypeptide 2 [Macaca mulatta]
gi|355749973|gb|EHH54311.1| General transcription factor IIH polypeptide 2 [Macaca
fascicularis]
gi|380785669|gb|AFE64710.1| general transcription factor IIH subunit 2 [Macaca mulatta]
gi|383411171|gb|AFH28799.1| general transcription factor IIH subunit 2 [Macaca mulatta]
gi|384940950|gb|AFI34080.1| general transcription factor IIH subunit 2 [Macaca mulatta]
Length = 395
Score = 310 bits (795), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 170/394 (43%), Positives = 243/394 (61%), Gaps = 32/394 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P HI +L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
+ I+ K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA
Sbjct: 183 YDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPAS 242
Query: 269 AEFAIANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCEL 317
+ +LI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCEL 301
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P +C+ICGL LVS+PHLARSYHHLFP+ F E+ PL + N R C+GCQ L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-PL---EEYNGER-FCYGCQGEL---- 352
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
+YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 KDQHVYV-CAVCQNVFCVDCDVFVHDSLHCCPGC 385
>gi|126314992|ref|XP_001364912.1| PREDICTED: general transcription factor IIH subunit 2-like
[Monodelphis domestica]
Length = 395
Score = 310 bits (794), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 173/402 (43%), Positives = 241/402 (59%), Gaps = 35/402 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ +R ++Q G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVQLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P HI +L + C G+ SL N+L L L +P + REVL+L+S+L+TCDP +I
Sbjct: 123 NPRKHIASLKKAVDMTCHGEPSLYNSLSLAMQTLKHMPGHTSREVLVLFSSLTTCDPSNI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
+ I+ K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA
Sbjct: 183 YDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGAYHVILDESHYKELLTHHVSPPPAS 242
Query: 269 AEFAIANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCEL 317
+ +LI+MGFPQ + S S+ + G+ GY CP+C+A+ EL
Sbjct: 243 SSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDSSTEPGLTLGGYFCPQCRAKYSEL 301
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P +C+ICGL LVS+PHLARSYHHLFP+ F EV+ N R C GC L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEVSLEEYNGER-----FCHGC----LGEL 352
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLRHSNP 419
+Y+ C C+ FC++CD++IHESLH CPGC H NP
Sbjct: 353 KDQHVYI-CTVCQNVFCVDCDLFIHESLHCCPGC---IHKNP 390
>gi|6681762|ref|NP_001506.1| general transcription factor IIH subunit 2 [Homo sapiens]
gi|17380326|sp|Q13888.1|TF2H2_HUMAN RecName: Full=General transcription factor IIH subunit 2; AltName:
Full=Basic transcription factor 2 44 kDa subunit;
Short=BTF2 p44; AltName: Full=General transcription
factor IIH polypeptide 2; AltName: Full=TFIIH basal
transcription factor complex p44 subunit
gi|496609|emb|CAA82910.1| basic transcripion factor 2, 44 kD subunit [Homo sapiens]
gi|5531809|gb|AAD44479.1| basic transcription factor 2 [Homo sapiens]
gi|146327202|gb|AAI41604.1| General transcription factor IIH, polypeptide 2, 44kDa [synthetic
construct]
gi|147898053|gb|AAI40304.1| General transcription factor IIH, polypeptide 2, 44kDa [synthetic
construct]
gi|208968221|dbj|BAG73949.1| General transcription factor IIH subunit 2 [synthetic construct]
Length = 395
Score = 310 bits (794), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 170/394 (43%), Positives = 243/394 (61%), Gaps = 32/394 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P HI +L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
+ I+ K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA
Sbjct: 183 YDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPAS 242
Query: 269 AEFAIANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCEL 317
+ +LI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCEL 301
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P +C+ICGL LVS+PHLARSYHHLFP+ F E+ PL + N R C+GCQ L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-PL---EEYNGER-FCYGCQGEL---- 352
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
+YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 KDQHVYV-CAVCQNVFCVDCDVFVHDSLHCCPGC 385
>gi|392578803|gb|EIW71930.1| hypothetical protein TREMEDRAFT_72606 [Tremella mesenterica DSM
1558]
Length = 462
Score = 310 bits (794), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 170/470 (36%), Positives = 259/470 (55%), Gaps = 69/470 (14%)
Query: 1 MTNSERKRLNGEAEEEEEDEDD--------------NLNG----GLEAWERSYADDRSWE 42
M + + + E EE D+DD ++NG G WE +Y +RSW+
Sbjct: 1 MPDDDNYDPTADLEYEEVDDDDQPRTSTAAKGKHNASVNGQAEKGQAVWEGTY--NRSWD 58
Query: 43 ALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEM 102
+QED G L+ +S + +R D L ++ +IR+++I++DLS + +
Sbjct: 59 VVQEDAEGGLQSAVDSLIARGRRKRAEIDTPL-------RRSIIRHMFIILDLSESVLDK 111
Query: 103 DFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMG- 161
DFRPSR + + + ++V E+FDQNPL QIG++ ++D ++ L +GG+P+ + L
Sbjct: 112 DFRPSRFELTLQYMRSYVVEWFDQNPLGQIGMIIMRDRLSEVLIPMGGNPQEILSVLTDK 171
Query: 162 -KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPG---DIMETIQKCKE 217
KL SG+ SLQN L + +G +S +PS E+L+++S++ST DP +I + +
Sbjct: 172 RKLEPSGEPSLQNGLVMAKGGMSHLPSTSSLEILVVFSSISTADPDGPINIHQVLSDLSS 231
Query: 218 SKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPP----------- 266
S++R S+I LS E+ IC+ +CQ TGG + VA+DE H +EL+ E PPP
Sbjct: 232 SRVRTSIISLSGEIKICRQICQRTGGKFGVAMDEDHLRELLWETIPPPAQTQSSNPTTLG 291
Query: 267 ---AIAEFA------------IANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCK 311
A+A + +L+ MGFP R G ++C CH +K G GY CPRC
Sbjct: 292 VRNALAAGGNRVDGDGSRPPPVGDLMVMGFPVRLPPGGETLCVCHGLLKKG-GYLCPRCG 350
Query: 312 ARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQ 371
+++C++PTDC +CGL +VSSPHLARS+ LFP+A +D +T R RS TC+GC +
Sbjct: 351 SKLCDVPTDCEVCGLMVVSSPHLARSFWFLFPVAHYDALTVETTMGDRERSSPTCYGCDR 410
Query: 372 SL----------LSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
S + G P C +C K FC ECD+YIH++LH CPGC
Sbjct: 411 SFKTMDETGSAHVVDGISPTGRYRCARCFKDFCSECDLYIHDTLHTCPGC 460
>gi|410925308|ref|XP_003976123.1| PREDICTED: general transcription factor IIH subunit 2-like
[Takifugu rubripes]
Length = 392
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 168/394 (42%), Positives = 235/394 (59%), Gaps = 32/394 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + ++ RR L+ + +++ G++R+L+
Sbjct: 11 WEGGY--ERTWEVLKEDESGSLKATVEEILFQSKKRR------LIESHGQVRLGMMRHLF 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+VID SR+ + D +P+R+ K +EAFV E+FDQNP+SQ+GL+T K+ A LTDL G
Sbjct: 63 VVIDCSRSMEDQDLKPNRLTSTLKLLEAFVDEYFDQNPISQMGLITTKNKRAEKLTDLSG 122
Query: 151 SPESHIKALMGKLG--CSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P+ H AL + C G+ SL N L L L +P + RE+LI+ S+L+TCDP +I
Sbjct: 123 NPKKHCAALKKAVDTVCVGEPSLYNCLSLAVQTLRHMPGHTSRELLIILSSLTTCDPANI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
E I+ K K+R SVIGLSAE+ +C L ++TGGSY V LDESHFKEL+M H PPPA
Sbjct: 183 YELIETLKTLKVRVSVIGLSAEVRVCTVLTRETGGSYHVILDESHFKELLMLHVKPPPA- 241
Query: 269 AEFAIANLIKMGFPQRA------GEGSISICSCHKEVKVGV-----GYTCPRCKARVCEL 317
+ + +LI+MGFPQ + S H + G GY CP+C A+ EL
Sbjct: 242 SSSSECSLIRMGFPQHTVASLTDQDAKPSFSMAHLDSSSGPDLSLGGYFCPQCHAKYTEL 301
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P +C++CGL LV +PHLARS+HHLFP+ F E L R +C C L
Sbjct: 302 PVECKVCGLTLVLAPHLARSFHHLFPLQVFTESPADDLQTER-----SCQACHGEL---- 352
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
K +CP C FC++C ++IH+SLH CP C
Sbjct: 353 -KDKSVFSCPSCLSVFCVDCHLFIHDSLHCCPCC 385
>gi|114599829|ref|XP_001158018.1| PREDICTED: uncharacterized protein LOC461830 isoform 9 [Pan
troglodytes]
gi|114599831|ref|XP_001158068.1| PREDICTED: uncharacterized protein LOC461830 isoform 10 [Pan
troglodytes]
gi|114599833|ref|XP_001158128.1| PREDICTED: uncharacterized protein LOC461830 isoform 11 [Pan
troglodytes]
gi|397470434|ref|XP_003806827.1| PREDICTED: general transcription factor IIH subunit 2 [Pan
paniscus]
gi|397470436|ref|XP_003806828.1| PREDICTED: general transcription factor IIH subunit 2 [Pan
paniscus]
gi|397470438|ref|XP_003806829.1| PREDICTED: general transcription factor IIH subunit 2 [Pan
paniscus]
gi|410207616|gb|JAA01027.1| general transcription factor IIH, polypeptide 2C [Pan troglodytes]
gi|410258220|gb|JAA17077.1| general transcription factor IIH, polypeptide 2C [Pan troglodytes]
gi|410299712|gb|JAA28456.1| general transcription factor IIH, polypeptide 2, 44kDa [Pan
troglodytes]
gi|410350531|gb|JAA41869.1| general transcription factor IIH, polypeptide 2C [Pan troglodytes]
gi|410350533|gb|JAA41870.1| general transcription factor IIH, polypeptide 2D [Pan troglodytes]
Length = 395
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 169/394 (42%), Positives = 243/394 (61%), Gaps = 32/394 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P H+ +L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHVTSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
+ I+ K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA
Sbjct: 183 YDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPAS 242
Query: 269 AEFAIANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCEL 317
+ +LI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCEL 301
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P +C+ICGL LVS+PHLARSYHHLFP+ F E+ PL + N R C+GCQ L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-PL---EEYNGER-FCYGCQGEL---- 352
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
+YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 KDQHVYV-CAVCQNVFCVDCDVFVHDSLHCCPGC 385
>gi|452824299|gb|EME31303.1| transcription initiation factor TFIIH subunit H2 isoform 1
[Galdieria sulphuraria]
Length = 398
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 166/410 (40%), Positives = 252/410 (61%), Gaps = 23/410 (5%)
Query: 18 EDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVAT 77
+D++ + L +WE+ RSWE L+EDE+G ++ D S+F ++ +R+ ++ T
Sbjct: 2 DDDEKPESLTLYSWEQDIV--RSWETLEEDETGKIK--DLSSFERSRVKRKRKN-----T 52
Query: 78 TARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTV 137
+++GLIR+L +++DLSR A E D +PSR V + F+ +F++NP+SQ+ +V +
Sbjct: 53 QQNVRRGLIRFLVLILDLSREAKETDVKPSRGEVCLSCAQKFLYSYFNENPISQLAVVVL 112
Query: 138 KDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLI 195
+DGVA L+ +G +P H + + + G G+ SLQN LD+ LL IPSYG REVLI
Sbjct: 113 RDGVAEKLSSMGSNPRQHSEVVKNANQKGFYGNCSLQNGLDVALSLLHSIPSYGSREVLI 172
Query: 196 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFK 255
LY+++S+CDPGDI +TI+K ++ +IRC+VIG++AE++I K+L T GSY V ++ESH
Sbjct: 173 LYNSISSCDPGDIRQTIEKLEKERIRCNVIGMAAELYILKYLAARTHGSYFVCMNESHLL 232
Query: 256 ELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVC 315
EL+ + P I L++MGFP +C K ++ V + CPRC+
Sbjct: 233 ELLEDFVVPSALIENNTKTALVRMGFPTLKAYKEPKVCLNDKVLRNQV-FVCPRCECCYG 291
Query: 316 ELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSR---STCFGCQQS 372
E+P +C +CGL LVSS LARSYHHLFP+A F E+ D +S + CF C+ +
Sbjct: 292 EIPIECVLCGLILVSSSQLARSYHHLFPVANFHELE----EDKYKQSHFQPNYCFACKGT 347
Query: 373 LLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLRHSNPIVA 422
G++ Y CP C+ FC CDI+IH+ L+NCPGCE +R N I +
Sbjct: 348 FPFEGSE---YFVCPNCQNIFCGICDIFIHDGLNNCPGCE-IRPENRIAS 393
>gi|109809737|ref|NP_001035955.1| general transcription factor IIH subunit 2-like protein [Homo
sapiens]
gi|148922852|ref|NP_001092198.1| general transcription factor IIH subunit 2-like protein [Homo
sapiens]
gi|74737138|sp|Q6P1K8.1|T2H2L_HUMAN RecName: Full=General transcription factor IIH subunit 2-like
protein; AltName: Full=General transcription factor IIH
polypeptide 2-like protein
gi|40353046|gb|AAH64557.1| GTF2H2D protein [Homo sapiens]
gi|40674450|gb|AAH65021.1| General transcription factor IIH, polypeptide 2D [Homo sapiens]
gi|76779844|gb|AAI05981.1| GTF2H2C protein [Homo sapiens]
gi|189054850|dbj|BAG37691.1| unnamed protein product [Homo sapiens]
gi|219521708|gb|AAI71860.1| General transcription factor IIH, polypeptide 2D [Homo sapiens]
gi|312152202|gb|ADQ32613.1| general transcription factor IIH, polypeptide 2, 44kDa [synthetic
construct]
Length = 395
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 170/394 (43%), Positives = 243/394 (61%), Gaps = 32/394 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P HI +L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKEAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
+ I+ K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA
Sbjct: 183 YDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHLSPPPAS 242
Query: 269 AEFAIANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCEL 317
+ +LI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCEL 301
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P +C+ICGL LVS+PHLARSYHHLFP+ F E+ PL + N R C+GCQ L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-PL---EEYNGER-FCYGCQGEL---- 352
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
+YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 KDQHVYV-CAVCQNVFCVDCDVFVHDSLHCCPGC 385
>gi|395325355|gb|EJF57779.1| TFIIH basal transcription factor complex subunit SSL1 [Dichomitus
squalens LYAD-421 SS1]
Length = 448
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 160/400 (40%), Positives = 246/400 (61%), Gaps = 30/400 (7%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYL 89
AWE +Y RSW+ +QEDE+G L + + R L+A A I++ +IR+L
Sbjct: 59 AWEATYT--RSWDTVQEDEAGRLEGAVQNLIARGRRR------RLLAPAAAIRRTIIRHL 110
Query: 90 YIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
+V+DLS A + D RP+R ++ + FV E+FDQNPL QIG+V ++ G+ + ++
Sbjct: 111 VLVLDLSSAMMDRDMRPTRFDLMLQYAREFVTEWFDQNPLGQIGIVGMRGGLGERIGEMS 170
Query: 150 GSPESHIKALM--GKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 207
G+P+ +KA++ KL +G+ SLQNA+++ + +S +P+ RE+++++ +L+TCDPG+
Sbjct: 171 GNPQDVLKAILERHKLLPNGEPSLQNAVEMARSSMSHLPTQSSREIVVIFGSLTTCDPGN 230
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPP- 266
I +T+ +C + +IR S++ L+AEM +C+ LC TGG + VA++E HFK+L+ E PPP
Sbjct: 231 IHDTLDECVKDRIRISIVALAAEMKVCRELCDKTGGQFGVAMNEGHFKDLLFELIPPPAQ 290
Query: 267 -AIAEFA---IANLIKMGFPQRAGEGS-ISICSCHKEVKVGVGYTCPRCKARVCELPTDC 321
A+A A+L+ MGFP R + S S+C CH ++K G+ CPRC A+VC++PTDC
Sbjct: 291 RAVARTGGGTAADLMIMGFPMRLPDTSPPSLCVCHSQMK-SEGFLCPRCLAKVCDVPTDC 349
Query: 322 RICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSS----- 376
ICGL +VSSPHLARSYHHLFP+ + VT L D C GC + +
Sbjct: 350 DICGLMIVSSPHLARSYHHLFPVKSYSAVTTL---DDTPEPSKRCHGCAVAFKETPSTML 406
Query: 377 -----GNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
G P C +C FC +CD+++H+ +H CPGC
Sbjct: 407 GASGEGMSPYGRYRCLECHSDFCADCDVFVHDVVHCCPGC 446
>gi|158258154|dbj|BAF85050.1| unnamed protein product [Homo sapiens]
Length = 395
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 170/394 (43%), Positives = 243/394 (61%), Gaps = 32/394 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGIMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P HI +L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKEAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
+ I+ K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA
Sbjct: 183 YDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHLSPPPAS 242
Query: 269 AEFAIANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCEL 317
+ +LI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCEL 301
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P +C+ICGL LVS+PHLARSYHHLFP+ F E+ PL + N R C+GCQ L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-PL---EEYNGER-FCYGCQGEL---- 352
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
+YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 KDQHVYV-CAVCQNVFCVDCDVFVHDSLHCCPGC 385
>gi|157115005|ref|XP_001652513.1| btf [Aedes aegypti]
gi|108877047|gb|EAT41272.1| AAEL007056-PA [Aedes aegypti]
Length = 408
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 160/401 (39%), Positives = 240/401 (59%), Gaps = 34/401 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +++WEA++ED+ G + A+ +R+ + + G++R+LY
Sbjct: 12 WETGY--EKTWEAIKEDDDGLVEGSVADIIQKAKRKRQAMKKGFS------KLGMMRHLY 63
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+++D S A D +P+R K +E F+ EFFDQNP+SQ+G++ +K A +++LGG
Sbjct: 64 VLLDCSEAMTVPDLKPTRFLCTLKLLEIFIEEFFDQNPISQLGVIAMKAKRAEKISELGG 123
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
S H+KA+ G KL +G+ SLQN LDL L +P++ REVL++ +L+TCDP DI
Sbjct: 124 SCRKHVKAVAGLSKLNLTGEPSLQNGLDLALKTLKMVPAHASREVLVVMGSLTTCDPTDI 183
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA- 267
TI+ K IRCSV+ LSAE+ +CK LC +TGG Y LD++HFK+ +++H PP A
Sbjct: 184 HITIEALKAEGIRCSVVSLSAEIRVCKFLCTETGGVYGAVLDDAHFKDQLLQHIDPPQAG 243
Query: 268 -IAEFAIANLIKMGFPQ-RAGEGS---ISICSCHKEVK------VGVGYTCPRCKARVCE 316
EF +LIKMGFP + EG +++C CH + GY CP+C ++ C+
Sbjct: 244 NQQEF---SLIKMGFPHGKTEEGKDPPLTMCMCHIDSTDEPSKLTSGGYHCPQCYSKYCD 300
Query: 317 LPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSS 376
LP +C CGL L S+PHLARSYHHLFP+ F E++ S C+GCQ+ S
Sbjct: 301 LPVECAACGLTLASAPHLARSYHHLFPVPHFQELS-------FEHQASICYGCQKPFTES 353
Query: 377 GNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLRHS 417
+K C C++ FC++CDI+IHE++H+C GC ++ S
Sbjct: 354 TDK--TVYQCGTCQQVFCIDCDIFIHETMHSCVGCTTIPSS 392
>gi|254566501|ref|XP_002490361.1| Component of the core form of RNA polymerase transcription factor
TFIIH [Komagataella pastoris GS115]
gi|238030157|emb|CAY68080.1| Component of the core form of RNA polymerase transcription factor
TFIIH [Komagataella pastoris GS115]
gi|328350755|emb|CCA37155.1| Suppressor of stem-loop protein 1 [Komagataella pastoris CBS 7435]
Length = 447
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 243/412 (58%), Gaps = 41/412 (9%)
Query: 25 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKG 84
NGG +WE Y RSW+ +QEDE+G L I + A +R L++ Q+G
Sbjct: 50 NGGY-SWEDEY--HRSWDIVQEDEAGSLEGI-VTGIMEAHKKRFLKN------VTPFQRG 99
Query: 85 LIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 144
+IR + +VID S+ +E D RP+R A+ FV FFDQNP+SQ+G+V +++G+A
Sbjct: 100 IIRSMVLVIDFSKVMSEKDLRPNRAALTISNAIEFVNNFFDQNPISQLGIVLMRNGIATL 159
Query: 145 LTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALST 202
++++ G+P +H++AL + +L +GD SLQNA ++ +GLL PS+ RE+L+++ AL T
Sbjct: 160 VSEVSGNPNNHVEALRSIRRLEPTGDPSLQNAFEMARGLLLHTPSHSTREILMIFGALFT 219
Query: 203 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS----YSVALDESHFKELI 258
DPGDI TI + KIR +IGL+A++ ICK +C+ T Y+V L+E HFK+L+
Sbjct: 220 SDPGDIHTTIDSLVKEKIRVKIIGLTAQVAICKEICRRTNYGDDTLYAVILNEGHFKDLL 279
Query: 259 MEHAPP----PPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARV 314
++ P A E LIK GFP R E S C+CH ++ G GY CP CK++V
Sbjct: 280 LDAVTPLAISKSAQVEMRGFTLIKAGFPTRISEAIPSFCACHSKLIHG-GYICPGCKSKV 338
Query: 315 CELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC----- 369
C LPT C C L L+ S HLARSYHHLFP+ F EV PL + + CF C
Sbjct: 339 CMLPTVCPCCNLMLILSTHLARSYHHLFPLKLFQEV-PLA----ESYISTNCFSCLTEFP 393
Query: 370 ------QQSLLSSGNKPGLYVA----CPKCKKHFCLECDIYIHESLHNCPGC 411
++S + K + + CP C KHFC++CD+++H+ LHNCPGC
Sbjct: 394 QGMSESERSNSDNRAKKEFHTSSRYQCPDCNKHFCVDCDVFVHDVLHNCPGC 445
>gi|367014707|ref|XP_003681853.1| hypothetical protein TDEL_0E03990 [Torulaspora delbrueckii]
gi|359749514|emb|CCE92642.1| hypothetical protein TDEL_0E03990 [Torulaspora delbrueckii]
Length = 464
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 174/400 (43%), Positives = 236/400 (59%), Gaps = 26/400 (6%)
Query: 26 GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGL 85
G AWE RSW+ + DE G D SA + R + RS + Q+G+
Sbjct: 74 SGGYAWEDEIK--RSWDLVTVDEDG-----DMSALAASLIESR-KKRSALKNITPYQRGI 125
Query: 86 IRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 145
IR L +V+D S A AE D RP+R A++ + FV EFFDQNP+SQ+G+VT+++G+A +
Sbjct: 126 IRTLVLVLDCSEAMAEKDLRPNRHAMIVQYAIDFVHEFFDQNPISQLGIVTMRNGLAQLI 185
Query: 146 TDLGGSPESHIKA--LMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTC 203
+ + G+P+ HI A L+ K G+ SLQNAL++ +GLL +P++ +EVLI++ +LS+
Sbjct: 186 SQISGNPQDHIDALKLIRKQEPKGNPSLQNALEMSRGLLLPVPAHCTKEVLIVFGSLSST 245
Query: 204 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELIM 259
DPGDI +TI + IR VIGLSA++ ICK LC+ T Y V LDE+H KEL
Sbjct: 246 DPGDIHQTINSLVQESIRVKVIGLSAQVAICKELCKATNYGDESYYQVPLDETHCKELFD 305
Query: 260 EHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPT 319
+ P P L++MGFP R E S + C+CH ++ G GY CP C+++VC LPT
Sbjct: 306 QAVVPLPVNKINKGFTLVRMGFPTRIFEDSPTFCACHSQLMYG-GYFCPNCQSKVCSLPT 364
Query: 320 DCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGN- 378
C C L L+ S HLARSYHHL P+ F EV P P + CF CQ + N
Sbjct: 365 VCPCCDLMLILSTHLARSYHHLMPLKTFTEV-PSVEEFPTD----NCFSCQIRFPTIKNH 419
Query: 379 KPGLYVA-----CPKCKKHFCLECDIYIHESLHNCPGCES 413
K G + C CKK FC++CD+YIHE LHNCPGCES
Sbjct: 420 KTGELLTSSRYRCESCKKDFCIDCDVYIHEILHNCPGCES 459
>gi|156844855|ref|XP_001645488.1| hypothetical protein Kpol_1004p2 [Vanderwaltozyma polyspora DSM
70294]
gi|156116152|gb|EDO17630.1| hypothetical protein Kpol_1004p2 [Vanderwaltozyma polyspora DSM
70294]
Length = 497
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 175/407 (42%), Positives = 236/407 (57%), Gaps = 28/407 (6%)
Query: 21 DDNLNG--GLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATT 78
+D L G G +WE RSW+ + DE G D +A + R + R+
Sbjct: 101 NDKLQGVSGGYSWEDELK--RSWDLVTVDEEG-----DMTALVASLVEAR-KKRAAQKVV 152
Query: 79 ARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVK 138
Q+G+IR L +V+D S A AE D RP+R + + F EFFDQNP+SQ+G+V +K
Sbjct: 153 TPYQRGIIRSLILVLDCSEAMAEKDLRPNRNVMSIQYAIDFTHEFFDQNPISQLGIVIMK 212
Query: 139 DGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLIL 196
+G+A LT + G+P+ HI AL + + G+ SLQNAL++ +GLL +P++ REVLI+
Sbjct: 213 NGLAQLLTPVSGNPQEHIDALKSIRRQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIV 272
Query: 197 YSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS----YSVALDES 252
+ LS+ DPGDI +TIQ E KIR VIGLSA++ IC+ LC+ T + Y + LDE+
Sbjct: 273 FGGLSSTDPGDIHQTIQSLVEEKIRVKVIGLSAQVAICQELCKATNYNDDSFYRIILDET 332
Query: 253 HFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKA 312
HFKEL E P P L+KMGFP R E S S C+CH ++ G GY CP C+
Sbjct: 333 HFKELFDEAVTPLPVNKINKGFTLVKMGFPTRVFEDSPSFCACHSKLVYG-GYFCPNCQN 391
Query: 313 RVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQS 372
+VC LP C C L L+ S HLARSYHHL P+ F EV P N P + CF CQ
Sbjct: 392 KVCSLPIVCPCCDLMLILSTHLARSYHHLMPLKTFSEV-PHTENFPTD----NCFSCQIR 446
Query: 373 L-LSSGNKPGLYVA-----CPKCKKHFCLECDIYIHESLHNCPGCES 413
+ K G + C CK+ FC++CD++IHE LHNCPGCE+
Sbjct: 447 FPVLRNQKTGELLTSSRYRCTDCKQDFCIDCDVFIHEVLHNCPGCEA 493
>gi|158293200|ref|XP_314533.4| AGAP010559-PA [Anopheles gambiae str. PEST]
gi|157016844|gb|EAA09916.5| AGAP010559-PA [Anopheles gambiae str. PEST]
Length = 421
Score = 307 bits (787), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 158/402 (39%), Positives = 244/402 (60%), Gaps = 32/402 (7%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +++WEA++ED+ G + + A+ +R+ R + G++R+LY
Sbjct: 12 WETGY--EKTWEAIKEDDDGLIEGSVSDIIQKAKRKRQAMKRGFS------KLGMMRHLY 63
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+++D S A D +P+R K +E F+ EFFDQNP+SQ+G++ +K A +++LGG
Sbjct: 64 VLLDCSEAMTVPDLKPTRFICSLKLLELFIEEFFDQNPISQLGVIAMKAKRAEKISELGG 123
Query: 151 SPESHIKA---LMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 207
+ HIKA L + G+ SLQN L+L L IP + RE+L++ +L++CDP D
Sbjct: 124 TSRKHIKAVHALTNGVPLVGEPSLQNGLELALKTLRMIPQHASREILVIMGSLTSCDPND 183
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 267
+ TI+ K +RCSV+ LSAE+ ICK LC +TGG + LD++H+K+ +++H PP A
Sbjct: 184 VHLTIENLKTEGVRCSVLSLSAEIRICKFLCTETGGLFGAVLDDAHYKDQLLQHIDPPQA 243
Query: 268 --IAEFAIANLIKMGFP----QRAGEGSISICSCHKEVK------VGVGYTCPRCKARVC 315
EF+ LIKMGFP + E +++C CH + GY CP+C ++ C
Sbjct: 244 GNQQEFS---LIKMGFPHGKTESGKEPPLTMCMCHIDSVDEPAKLTSGGYHCPQCYSKYC 300
Query: 316 ELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPL---CLNDPRNRSRSTCFGCQQS 372
ELP +C CGL L S+PHLARSYHHLFP+ F+E+ PL + +PR+ + C+ CQ++
Sbjct: 301 ELPVECSACGLTLASAPHLARSYHHLFPVPHFNEL-PLEQVQVQEPRDPPVTNCYACQKT 359
Query: 373 LLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESL 414
L S +K + C CK+ FC++CDI+IHE+LH+C GC ++
Sbjct: 360 LASGTDK--MVYECDACKQVFCIDCDIFIHETLHSCVGCTTI 399
>gi|126320570|ref|XP_001362699.1| PREDICTED: general transcription factor IIH subunit 2-like
[Monodelphis domestica]
Length = 395
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 171/402 (42%), Positives = 241/402 (59%), Gaps = 35/402 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDASRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P+ H+ +L + C G+ SL N+L L L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPKKHVASLKKAVDMTCHGEPSLYNSLSLAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
+ I+ K +KIR SVIGLSAE+ +C L ++TGG Y V LDESH+KEL+ H PPPA
Sbjct: 183 YDLIKSLKAAKIRVSVIGLSAEVRVCTVLARETGGVYHVILDESHYKELLTHHVSPPPAS 242
Query: 269 AEFAIANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCEL 317
+ +LI+MGFPQ + S S+ + G+ GY CP+C+A+ EL
Sbjct: 243 SSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDSSTEPGLTLGGYFCPQCRAKYSEL 301
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P +C+ICGL LVS+PHLARSYHHLFP+ F EV+ N R C GC L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEVSLEEYNGER-----FCQGC----LGEL 352
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLRHSNP 419
+Y+ C C+ FC++CD++IHESLH CPGC H NP
Sbjct: 353 KDQHVYI-CTVCQNVFCVDCDLFIHESLHCCPGC---IHKNP 390
>gi|47210864|emb|CAF92597.1| unnamed protein product [Tetraodon nigroviridis]
Length = 395
Score = 307 bits (786), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 175/396 (44%), Positives = 238/396 (60%), Gaps = 34/396 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ RR LV + +++ G++R+LY
Sbjct: 12 WEGGY--ERTWEVLKEDESGSLKASVEEILFQAKKRR------LVQSHGQVRLGMMRHLY 63
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+VID SR+ + D +P+R+ K +E FV E+FDQNP+SQ+G++T K+ A LTDL G
Sbjct: 64 VVIDCSRSMEDQDLKPNRLTSTLKLMEGFVEEYFDQNPISQMGIITTKNKRAEKLTDLAG 123
Query: 151 SPESHIKALMGKL--GCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P+ H AL + C G+ SL N L L L +P + REVLI+ S+L+TCDPG+I
Sbjct: 124 NPKKHAAALKKAVDSACVGEPSLYNCLSLALQTLRHMPGHTSREVLIILSSLTTCDPGNI 183
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
E IQ K K+R SV+GLSAE+ +C L ++TGGSY V LDESHFKEL+M H PPPA
Sbjct: 184 YELIQTLKSLKVRVSVVGLSAEVRVCTVLTRETGGSYHVILDESHFKELLMLHVKPPPAS 243
Query: 269 AEFAIANLIKM-GFPQRA------GEGSISICSCHKEVKVG------VGYTCPRCKARVC 315
+ +LI+M GFPQ + S H E G GY CP+C A+
Sbjct: 244 CS-SECSLIRMAGFPQHTMASLTDQDAKPSFSMAHLEGGGGGPDLSLGGYFCPQCHAKYT 302
Query: 316 ELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLS 375
ELP +C++CGL LV +PHLARS+HHLFP+ F E + + P++R C CQ L
Sbjct: 303 ELPVECKVCGLTLVLAPHLARSFHHLFPLQVFPESS--AEDPPKDR---FCQACQGRL-- 355
Query: 376 SGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
K CP C FC+ECD++IH+SLH CP C
Sbjct: 356 ---KDKSVFTCPSCHSVFCVECDLFIHDSLHCCPCC 388
>gi|255634763|gb|ACU17743.1| unknown [Glycine max]
Length = 214
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 152/190 (80%), Positives = 174/190 (91%)
Query: 28 LEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIR 87
LEAWER+YA+DRSWEALQEDESG LRPID +A YHAQYRRRLR + A TARIQKGLIR
Sbjct: 24 LEAWERTYAEDRSWEALQEDESGLLRPIDTTAIYHAQYRRRLRTLAATAATARIQKGLIR 83
Query: 88 YLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTD 147
YLYIV+DLS+AA+E DFRPSRMAV+ KQVEAF+REFFDQNPLS +GLVT+KDG+A+C+T+
Sbjct: 84 YLYIVVDLSKAASERDFRPSRMAVMGKQVEAFIREFFDQNPLSHVGLVTIKDGIAHCITE 143
Query: 148 LGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 207
LGGSPESHIKALMGKL CSGD+SLQNAL+LV G L+QIPSYGHREVLILYSALSTCDPGD
Sbjct: 144 LGGSPESHIKALMGKLECSGDASLQNALELVLGYLNQIPSYGHREVLILYSALSTCDPGD 203
Query: 208 IMETIQKCKE 217
+METI + ++
Sbjct: 204 LMETIPEMQK 213
>gi|367002171|ref|XP_003685820.1| hypothetical protein TPHA_0E02960 [Tetrapisispora phaffii CBS 4417]
gi|357524119|emb|CCE63386.1| hypothetical protein TPHA_0E02960 [Tetrapisispora phaffii CBS 4417]
Length = 490
Score = 306 bits (784), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 171/409 (41%), Positives = 236/409 (57%), Gaps = 32/409 (7%)
Query: 21 DDNLNG--GLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATT 78
+D L G G +WE RSW+ + D+ ++ A A + RS
Sbjct: 94 NDQLAGTSGGYSWEDELK--RSWDLVTVDDE------NDMASLVASIVEARKKRSAQKVV 145
Query: 79 ARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVK 138
Q+G+IR L +++D S +E D RP+R A+ + F++EFFD+NP+SQ+G+V ++
Sbjct: 146 TPYQRGIIRSLILILDCSEVMSEKDLRPNRNAMSIQYAIDFIQEFFDENPISQLGIVIMR 205
Query: 139 DGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLIL 196
+G+AN L+ +GG+P++HI AL + + G+ SLQNAL++ +GLL +PS+ REVLI+
Sbjct: 206 NGLANLLSPIGGNPQAHIDALKSIRREEPKGNPSLQNALEMARGLLLPVPSHCTREVLIV 265
Query: 197 YSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDES 252
+ LS+ DPGDI +TIQ KIR VIGLSA++ ICK LC+ T Y V LDE
Sbjct: 266 FGGLSSTDPGDIHQTIQSLVNEKIRVKVIGLSAQVAICKELCKATNYDDESFYRVILDEV 325
Query: 253 HFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKA 312
HFKEL E P P L+KMGFP R E + + C+CH ++ G GY CP C +
Sbjct: 326 HFKELYDEAVTPLPVNKINKAFTLVKMGFPTRVFEENPTFCACHSKLVYG-GYFCPNCNS 384
Query: 313 RVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRST--CFGCQ 370
+VC LPT C C L L+ S HLARSYHHL P+ F EV P + + T CF CQ
Sbjct: 385 KVCSLPTVCPCCDLMLILSTHLARSYHHLMPLKTFSEV-------PTSETFETENCFSCQ 437
Query: 371 QSLLSSGNK------PGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 413
+ S NK C C+ FC++CD++IHE LHNCPGCES
Sbjct: 438 MTFPSLRNKKTGELLTSSRYRCQDCENDFCIDCDLFIHEILHNCPGCES 486
>gi|296422371|ref|XP_002840734.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636957|emb|CAZ84925.1| unnamed protein product [Tuber melanosporum]
Length = 469
Score = 306 bits (784), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 169/413 (40%), Positives = 246/413 (59%), Gaps = 38/413 (9%)
Query: 25 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKG 84
GG + ER RSW+ + E E G L + +R L+D T +Q+G
Sbjct: 50 GGGAQKRERWEDIKRSWDNVVEGEDGSLSSTVAGLLEAGKRKRLLKD------TTPLQRG 103
Query: 85 LIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 144
+IR+L +++DLS A E DFRP+R + + FVRE+F+QNP+SQ+G++ ++DG+A
Sbjct: 104 IIRHLILILDLSSAMMEKDFRPTRYLLSLRYACDFVREYFEQNPISQLGVLGMRDGLAVR 163
Query: 145 LTDLGGSPESHIKALMGKLGC---SGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALS 201
++DL G+P HI+A+ GKL G SLQNAL++ + L PS+G REV+I++ AL
Sbjct: 164 ISDLSGNPVDHIEAI-GKLRLDEGKGAPSLQNALEMSRAALFHAPSHGTREVVIVFGALL 222
Query: 202 TCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKEL 257
+ DPGDI +TI E KIR SV+GLSA++ +C+ LC+ T G Y VALD+ HF+EL
Sbjct: 223 SSDPGDIHQTISHLVEDKIRVSVVGLSAQVAVCRELCKRTNAGDEGVYGVALDDKHFREL 282
Query: 258 IMEHAPPPPA-IAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCE 316
+++ PP A+ + ++L+ MGFP R E + S+C+CH + G GY C RC +VC
Sbjct: 283 LLDTTIPPVTRSAKMSASSLLMMGFPSRMVEKTASLCACHSTLTKG-GYLCSRCSTKVCA 341
Query: 317 LPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRST-CFGCQ----- 370
LP +C CGL L+ S HLARSYHHLFP+ + EV P + S+ST C+ CQ
Sbjct: 342 LPMECPACGLTLILSTHLARSYHHLFPLKNWVEV-PW-----KAASKSTHCYACQIPFPH 395
Query: 371 ----------QSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 413
+ ++G AC C HFC++CD++ HE+L+NCP C+S
Sbjct: 396 PPAKPEELSAPAKTATGTSVSSRYACTICHNHFCIDCDVFCHETLYNCPACQS 448
>gi|402224004|gb|EJU04067.1| TFIIH basal transcription factor complex subunit SSL1 [Dacryopinax
sp. DJM-731 SS1]
Length = 440
Score = 306 bits (784), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 159/407 (39%), Positives = 240/407 (58%), Gaps = 35/407 (8%)
Query: 27 GLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLI 86
G AWE SY RSW+ +QEDE+G L+ +A R + R + A I++ +I
Sbjct: 46 GAYAWEASY--KRSWDTVQEDEAGSLQ----AAVQDLVARSKRRRCACSWGDAPIRRTII 99
Query: 87 RYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLT 146
R++ ++DLS A + D RPSR + FV E+FDQNPL Q+G+V +++GV +
Sbjct: 100 RHMMFLVDLSTAMMDRDMRPSRFDLTLSYAREFVSEWFDQNPLGQMGVVGMRNGVGERIG 159
Query: 147 DLGGSPESHIKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCD 204
D+ G+P+ +K + K L +G+ SLQN++++ + ++ +P++ RE+LI++ +L+T D
Sbjct: 160 DMSGNPQDVLKCFLDKTLLEPAGEPSLQNSIEMARASMNHLPTHSSREILIIFGSLTTVD 219
Query: 205 PGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPP 264
PG++++T+ C +IR S++ LSAEM +C+ +C+ TGG + VAL+E H+K+L+ E PP
Sbjct: 220 PGNLLDTVDACVRDQIRISIVALSAEMKVCRDMCERTGGVFGVALNEGHYKDLLFELVPP 279
Query: 265 P---------PAIAEFAIANLIKMGFPQR-AGEGSISICSCHKEVKVGVGYTCPRCKARV 314
P A A + L++MGFP R S+C CH ++ GY CPRC ++V
Sbjct: 280 PADKSPVSRLAAQAGEGQSELMQMGFPTRLPATAPPSLCVCHSRLR-SEGYICPRCNSKV 338
Query: 315 CELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLL 374
C++PTDC ICGL +VSSPHLARSYHHLFP + V L + S C C
Sbjct: 339 CDVPTDCDICGLMIVSSPHLARSYHHLFPAPAYKAVLEL-----DGKEASACHACSLPFP 393
Query: 375 SSGNKP----------GLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
++ P G Y CPKCK F ECD+++H+ LH CPGC
Sbjct: 394 TTARAPLQTEEGMSPHGRY-RCPKCKHDFDAECDLFVHDVLHVCPGC 439
>gi|225543398|ref|NP_071294.3| general transcription factor IIH subunit 2 [Mus musculus]
gi|18203119|sp|Q9JIB4.1|TF2H2_MOUSE RecName: Full=General transcription factor IIH subunit 2; AltName:
Full=Basic transcription factor 2 44 kDa subunit;
Short=BTF2 p44; AltName: Full=General transcription
factor IIH polypeptide 2; AltName: Full=TFIIH basal
transcription factor complex p44 subunit
gi|9082152|gb|AAF82753.1| general transcription factor IIH polypeptide 2 [Mus musculus]
Length = 396
Score = 306 bits (784), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 165/396 (41%), Positives = 241/396 (60%), Gaps = 35/396 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDE+G L+ + A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDETGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P HI +L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
+ I+ K +KIR SVIGLSAE+ +C L ++TGG+Y V LDE+H+KEL+ H PPPA
Sbjct: 183 YDLIKTLKTAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDETHYKELLAHHVSPPPAS 242
Query: 269 AEFAIANLIKMGFPQRA--------GEGSISIC-----SCHKEVKVGVGYTCPRCKARVC 315
+ +LI+MGFPQ + S S+ S + +G GY CP+C+A+ C
Sbjct: 243 SSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDNNSTEPGLTLG-GYFCPQCRAKYC 300
Query: 316 ELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLS 375
ELP +C+ICGL LVS+PHLARSYHHLFP+ F E++ + C+GCQ L
Sbjct: 301 ELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEISL-----EEYKGERFCYGCQGEL-- 353
Query: 376 SGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
+YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 354 --KDQHVYV-CTVCQNVFCVDCDVFVHDSLHCCPGC 386
>gi|312384212|gb|EFR28989.1| hypothetical protein AND_02404 [Anopheles darlingi]
Length = 1093
Score = 306 bits (784), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 162/419 (38%), Positives = 246/419 (58%), Gaps = 35/419 (8%)
Query: 13 AEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDR 72
AEEE+ E WE Y +++WEA++ED+ G + A+ +R+ R
Sbjct: 2 AEEEDPKE--------YRWETGY--EKTWEAIKEDDDGLIEGSVTDIIQKAKRKRQAMKR 51
Query: 73 SLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQI 132
+ G++R+LY+++D S A + D +P+R K +E F+ EFFDQNP+SQ+
Sbjct: 52 GFS------KLGMMRHLYVLLDCSEAMSVPDLKPTRFICSLKLLELFIEEFFDQNPISQL 105
Query: 133 GLVTVKDGVANCLTDLGGSPESHIKALMG-KLGCSGDSSLQNALDLVQGLLSQIPSYGHR 191
G++ +K A +T+L G+ H+KA+ +G+ SLQN L+L L +PS+ R
Sbjct: 106 GVIAMKAKRAEKITELSGTARKHVKAVHALNTQLTGEPSLQNGLELALKTLRLVPSHASR 165
Query: 192 EVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDE 251
EVL++ +L+TCDP DI TI+ K IRCSV+ LSAE+ ICK+LC +TGG+Y+ LD+
Sbjct: 166 EVLVIMGSLTTCDPTDIHVTIETLKTEGIRCSVVSLSAEIRICKYLCTETGGTYAAVLDD 225
Query: 252 SHFKELIMEHAPPPPA--IAEFAIANLIKMGFP----QRAGEGSISICSCHKEVK----- 300
+H+K+ +++H PP A EF +LIKMGFP + E +++C CH +
Sbjct: 226 AHYKDQLLQHIDPPQAGNQQEF---SLIKMGFPHGKTETGKEPPLTMCMCHIDSTDEPAK 282
Query: 301 -VGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVT-PLCLNDP 358
GY CP+C ++ CELP +C CGL L S+PHLARS+HHLFP+ F E+T +
Sbjct: 283 LTSGGYHCPQCYSKYCELPVECAACGLTLASAPHLARSFHHLFPVPHFKELTLEQVQQEA 342
Query: 359 RNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLRHS 417
R + C+ CQ+ L + +K C C+ FC++CDI+IHE+LH+C GC ++ S
Sbjct: 343 REVPVNYCYACQKPLTVTTDKT--VYECDACRMVFCIDCDIFIHETLHSCVGCTTIPAS 399
>gi|110739908|dbj|BAF01859.1| putative transcription factor [Arabidopsis thaliana]
Length = 196
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 144/186 (77%), Positives = 161/186 (86%), Gaps = 1/186 (0%)
Query: 231 MFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSI 290
MFICKHLCQ+TGG YSVA+DE H K+L++EHAPPPPAIAEFAIANLIKMGFPQRA EGS+
Sbjct: 1 MFICKHLCQETGGLYSVAVDEVHLKDLLLEHAPPPPAIAEFAIANLIKMGFPQRAAEGSM 60
Query: 291 SICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEV 350
+ICSCHKEVK+G GY CPRCKARVC+LPT+C ICGL LVSSPHLARSYHHLFPIAPFDEV
Sbjct: 61 AICSCHKEVKIGAGYMCPRCKARVCDLPTECTICGLTLVSSPHLARSYHHLFPIAPFDEV 120
Query: 351 TPL-CLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCP 409
L LND R + +CFGCQQSL+ +GNKP V C KCK +FCL+CDIYIHESLHNCP
Sbjct: 121 PALSSLNDNRRKLGKSCFGCQQSLIGAGNKPVPCVTCRKCKHYFCLDCDIYIHESLHNCP 180
Query: 410 GCESLR 415
GCES+
Sbjct: 181 GCESIH 186
>gi|390459877|ref|XP_002744933.2| PREDICTED: general transcription factor IIH subunit 2 isoform 1
[Callithrix jacchus]
Length = 404
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 169/403 (41%), Positives = 243/403 (60%), Gaps = 41/403 (10%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P H+ +L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHVTSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
+ I+ K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA
Sbjct: 183 YDLIKTLKAAKIRVSVIGLSAEVRVCTALARETGGTYHVILDESHYKELLTHHVSPPPAS 242
Query: 269 AEFAIANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCEL 317
+ +LI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCEL 301
Query: 318 PTDCRIC---------GLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFG 368
P +C+IC GL LVS+PHLARSYHHLFP+ PF E+ L + N R C+G
Sbjct: 302 PVECKICGKKPSIHYSGLTLVSAPHLARSYHHLFPLDPFQEI----LLEEYNGER-FCYG 356
Query: 369 CQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
CQ L +YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 357 CQGEL----KDQHVYV-CAVCQNVFCVDCDVFVHDSLHCCPGC 394
>gi|16740713|gb|AAH16231.1| Gtf2h2 protein [Mus musculus]
gi|148668487|gb|EDL00806.1| general transcription factor II H, polypeptide 2, isoform CRA_a
[Mus musculus]
Length = 398
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 165/396 (41%), Positives = 241/396 (60%), Gaps = 35/396 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDE+G L+ + A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDETGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P HI +L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
+ I+ K +KIR SVIGLSAE+ +C L ++TGG+Y V LDE+H+KEL+ H PPPA
Sbjct: 183 YDLIKTLKTAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDETHYKELLAHHVSPPPAS 242
Query: 269 AEFAIANLIKMGFPQRA--------GEGSISIC-----SCHKEVKVGVGYTCPRCKARVC 315
+ +LI+MGFPQ + S S+ S + +G GY CP+C+A+ C
Sbjct: 243 SSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDNNSTEPGLTLG-GYFCPQCRAKYC 300
Query: 316 ELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLS 375
ELP +C+ICGL LVS+PHLARSYHHLFP+ F E++ + C+GCQ L
Sbjct: 301 ELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEISL-----EEYKGERFCYGCQGEL-- 353
Query: 376 SGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
+YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 354 --KDQHVYV-CTVCQNVFCVDCDVFVHDSLHCCPGC 386
>gi|392865317|gb|EAS31097.2| transcription factor ssl1 [Coccidioides immitis RS]
Length = 471
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 163/398 (40%), Positives = 236/398 (59%), Gaps = 37/398 (9%)
Query: 39 RSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRA 98
R+WE+L E G + + +R LRD T +Q+G+IR+L +V+DLS A
Sbjct: 60 RTWESLVEGADGTISSTVEGLLEAGKRKRLLRD------TTPLQRGIIRHLILVLDLSIA 113
Query: 99 AAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKA 158
+E D RP+R + + + FV E+F+QNP+SQ+G++ ++DG+A ++D+ G+P HI A
Sbjct: 114 MSEKDVRPTRYLLTLRYAQEFVLEYFEQNPISQLGIIGMRDGLAVRISDMSGNPSEHILA 173
Query: 159 L--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCK 216
+ + +G SLQNAL++ +G L PS+G REVLI++ AL + DPGDI +TI
Sbjct: 174 IQALRTRDPTGLPSLQNALEMARGALFHTPSHGTREVLIIFGALLSSDPGDIHKTITSLV 233
Query: 217 ESKIRCSVIGLSAEMFICKHLCQDTGG----SYSVALDESHFKELIMEHAPPPPAIAEF- 271
KIR V+GL+AE+ IC+ +C T Y VAL+E HF+EL+ME PP ++
Sbjct: 234 TDKIRVGVVGLAAEVAICREICSKTNAGDDSGYGVALNEQHFRELMMEITTPPVTRSQKQ 293
Query: 272 AIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSS 331
A+ +L+ MGFP R E S S+C+CH + G GY C RC +++C LP +C CGL L+ S
Sbjct: 294 AVNSLLMMGFPSRTVESSQSLCACHSKPSRG-GYLCSRCGSKICTLPAECPACGLTLILS 352
Query: 332 PHLARSYHHLFPIAPFDEVTPLCLNDPRNRS--RSTCFGC----------QQSLLSSGNK 379
HLARSYHHLFP+ + EV P N++ S CF C Q G
Sbjct: 353 THLARSYHHLFPLINWVEV-------PWNKASISSNCFACGNPFPPVPVRAQWETRGGTV 405
Query: 380 PGLYVA----CPKCKKHFCLECDIYIHESLHNCPGCES 413
G+ V+ C C HFC++CD++ HE +HNCPGC+S
Sbjct: 406 KGMSVSSRYECTVCHNHFCIDCDVFAHEIVHNCPGCQS 443
>gi|345304797|ref|XP_001512459.2| PREDICTED: general transcription factor IIH subunit 2-like
[Ornithorhynchus anatinus]
Length = 395
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 168/402 (41%), Positives = 243/402 (60%), Gaps = 35/402 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ +R + +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKR------ICEHHGQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P H AL + C G+ SL N+L L L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHTTALKKAVDMTCLGEPSLYNSLSLAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
+ I+ K +KIR S+IGLSAE+ +C L ++TGG+Y V LDESH+KEL++ H PPPA
Sbjct: 183 YDLIKSLKTAKIRVSIIGLSAEVRVCTVLARETGGTYHVILDESHYKELLIHHVSPPPAS 242
Query: 269 AEFAIANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCEL 317
+ +LI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 243 SSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDSSSEPGLTLGGYFCPQCRAKYCEL 301
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P +C++CGL LVS+PHLARSYHHLFP+ F E++ + R C GCQ L
Sbjct: 302 PVECKVCGLTLVSAPHLARSYHHLFPLDAFQEISLEEYHGER-----VCQGCQGEL---- 352
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLRHSNP 419
+Y+ C C+ FC+ECD+++H+ LH CPGC H NP
Sbjct: 353 KDQQVYI-CTVCQSVFCVECDLFVHDFLHCCPGC---IHKNP 390
>gi|354488323|ref|XP_003506320.1| PREDICTED: general transcription factor IIH subunit 2-like
[Cricetulus griseus]
gi|344248232|gb|EGW04336.1| General transcription factor IIH subunit 2 [Cricetulus griseus]
Length = 395
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 163/394 (41%), Positives = 239/394 (60%), Gaps = 32/394 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDE+G L+ + A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDETGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P HI +L + C+G+ SL N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCNGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
+ I+ K +KIR SVIGLSAE+ +C L ++TGG+Y V LDE+H+KEL+ H PPPA
Sbjct: 183 YDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDETHYKELLTHHVSPPPAS 242
Query: 269 AEFAIANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCEL 317
+ +LI+MGFPQ + S S+ + G+ GY CP+C+A+ EL
Sbjct: 243 SSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDNSTEPGLTLGGYFCPQCRAKYSEL 301
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P +C+ICGL LVS+PHLARSYHHLFP+ F E++ + C+GCQ L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEISL-----EEYKGERFCYGCQGEL---- 352
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
+YV C C+ FC++CD++IH+ LH CPGC
Sbjct: 353 KDQHVYV-CTVCQNVFCVDCDVFIHDCLHCCPGC 385
>gi|336272171|ref|XP_003350843.1| hypothetical protein SMAC_02512 [Sordaria macrospora k-hell]
gi|380095007|emb|CCC07509.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 466
Score = 305 bits (780), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 181/444 (40%), Positives = 245/444 (55%), Gaps = 54/444 (12%)
Query: 15 EEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSL 74
E D++ NG A RS SWE ++ L D S A+ R + R L
Sbjct: 7 EYASDDELKRNGKRTADGRSKQTKASWEDVKRSWDTVLETAD-SGLSIAEIREAEKRRRL 65
Query: 75 VATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGL 134
+ T +Q+G+IR+L +V+D+S A A+ D P+R VV FVRE+F+QNP+SQ+G+
Sbjct: 66 LRDTTPLQRGIIRHLMLVLDMSFAMADKDLLPNRYRVVLNNAIGFVREYFEQNPISQLGI 125
Query: 135 VTVKDGVANCLTDLGGSPESHIKALMG---KLGCSGDSSLQNALDLVQGLLSQIPSYGHR 191
V ++DG+A ++DL G+P HI+ LM + G+SSLQNAL + +G L Q PS+ R
Sbjct: 126 VGMRDGIAVRISDLSGNPAEHIEKLMQWSEQQDPQGNSSLQNALQMCRGALYQTPSHATR 185
Query: 192 EVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG---GSYSVA 248
EVLI+Y AL + DPGDI +TI +IR SV+GL+ ++ IC LC+ T G+YSVA
Sbjct: 186 EVLIIYGALVSIDPGDIHDTINDLVADRIRVSVVGLAGQVAICTELCKRTNNHDGNYSVA 245
Query: 249 LDESHFKELIMEHAPPPPA-IAEFAIANLIKMGFPQR--AGEGSISICSCHKEVKVGVGY 305
+DE H KEL PP E A+L+ MGFP R A + +S C+CH + GY
Sbjct: 246 IDEVHLKELFFAATTPPVTRTPEQNTASLLMMGFPSRTLAPKDHVSYCACHAK-PTREGY 304
Query: 306 TCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNR-SRS 364
TCPRC +VC LP DC IC L L+ S HLARSYHHLFP+ F EV P ++ SRS
Sbjct: 305 TCPRCGIKVCRLPIDCPICKLTLIQSTHLARSYHHLFPLKVFVEV-------PWSQASRS 357
Query: 365 T-CFGC---------------------------QQSLLSSGNKPGL-------YVACPKC 389
T C+ C +Q KP L AC C
Sbjct: 358 TACYSCLSPFPTGPRDTVAAAPAVLGGRAGKGGKQDSDPKNPKPELKGVSESGRYACQVC 417
Query: 390 KKHFCLECDIYIHESLHNCPGCES 413
HFC++CD++ HE++HNCPGC+S
Sbjct: 418 GNHFCIDCDVFAHETIHNCPGCQS 441
>gi|145242846|ref|XP_001393996.1| TFIIH basal transcription factor complex p47 subunit [Aspergillus
niger CBS 513.88]
gi|134078553|emb|CAK40474.1| unnamed protein product [Aspergillus niger]
gi|350640268|gb|EHA28621.1| hypothetical protein ASPNIDRAFT_212323 [Aspergillus niger ATCC
1015]
Length = 457
Score = 304 bits (779), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 163/425 (38%), Positives = 246/425 (57%), Gaps = 40/425 (9%)
Query: 11 GEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLR 70
GE + GG E WE S R+WE L E G + + +R LR
Sbjct: 27 GETTSASRSKRRKHRGGAE-WEVS----RTWETLVEGADGTISSTVEGLLEAGKRKRLLR 81
Query: 71 DRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLS 130
D T +Q+G+IR+L ++IDLS++ E D RP+R + + + FVREFF+QNP+S
Sbjct: 82 D------TTPLQRGIIRHLILIIDLSQSMTEKDLRPTRYLLSLRYAQEFVREFFEQNPIS 135
Query: 131 QIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSY 188
Q+G++ +KDG+A ++D+ G+P HI A+ + G SLQN ++ +G L PS+
Sbjct: 136 QLGVLGLKDGLAVRVSDMSGNPTEHISAIQSLRDQDPKGLPSLQNGFEMARGALFHTPSH 195
Query: 189 GHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGG----S 244
G RE+ +++ +L + DPGDI +TI KIR ++GL+A++ IC+ +C T G +
Sbjct: 196 GTREIFVIFGSLLSSDPGDIHQTITTLINDKIRVGIVGLAAQVAICREICGKTNGGDDTT 255
Query: 245 YSVALDESHFKELIMEHAPPPPAIAEF-AIANLIKMGFPQRAGEGSISICSCHKEVKVGV 303
Y VAL+E HF++L+M PP ++ + ++L+ MGFP R E S+C+CH + G
Sbjct: 256 YGVALNEQHFRDLVMNVTTPPATYSQKQSTSSLLMMGFPSRTVEAYPSLCACHSKPSRG- 314
Query: 304 GYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSR 363
GY C RC ++VC LP +C CGL L+ S HLARSYHHLFP+ + EV+ ++ SR
Sbjct: 315 GYLCSRCNSKVCGLPAECPSCGLTLILSTHLARSYHHLFPLMNWVEVS------WQHASR 368
Query: 364 ST-CFGC----------QQSLLSSGNKPGLYVA----CPKCKKHFCLECDIYIHESLHNC 408
S+ CF C +Q + G G+ V+ C C+ HFC++CD++ HE +HNC
Sbjct: 369 SSVCFACGISFPSVPPKEQWHTTEGQTKGISVSSRYECTVCRNHFCIDCDLFAHEVVHNC 428
Query: 409 PGCES 413
PGC+S
Sbjct: 429 PGCQS 433
>gi|255711256|ref|XP_002551911.1| KLTH0B02794p [Lachancea thermotolerans]
gi|238933289|emb|CAR21473.1| KLTH0B02794p [Lachancea thermotolerans CBS 6340]
Length = 470
Score = 304 bits (779), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 170/406 (41%), Positives = 236/406 (58%), Gaps = 37/406 (9%)
Query: 25 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKG 84
NGG AWE RSW+ ++ D+ G + + +S ++R +++L Q+G
Sbjct: 80 NGGY-AWEEDI--QRSWDLVKVDDEGNMAALVSSII--EARKKRASNKNLTP----FQRG 130
Query: 85 LIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 144
+IR + +V+D S A E D RP+R A+ + FV EFFDQNP+SQIG+V +++ +A
Sbjct: 131 IIRTMVLVLDCSDAMMEKDLRPNRYAMTIQYAINFVHEFFDQNPISQIGIVCMRNDLAQL 190
Query: 145 LTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALST 202
++ + G+P+ HI AL + K G+SSLQNAL++ +GLL +P++ REVLI++ ALS+
Sbjct: 191 VSQVSGNPQDHIDALKAIRKQEPKGNSSLQNALEMARGLLLHVPAHCTREVLIIFGALSS 250
Query: 203 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDT----GGSYSVALDESHFKELI 258
DPGDI +TI + +IR VIGLSA++ ICK LC+ T Y V L+E HFK+L
Sbjct: 251 TDPGDIHQTIASLVQERIRVRVIGLSAQVAICKELCKQTNYGDNSFYGVILNEVHFKDLF 310
Query: 259 MEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELP 318
E P P L+KMGFP R E S C+CH ++ G GY CP CK++VC LP
Sbjct: 311 AEAVTPLPVNKINKGFTLVKMGFPTRVYEDMPSFCTCHSKLMYG-GYFCPNCKSKVCSLP 369
Query: 319 TDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQ-------- 370
T C C L L+ S HLARSYHHL P+ F EV + TC+ CQ
Sbjct: 370 TVCPCCDLMLILSTHLARSYHHLMPLKTFQEV-----DVAETFPTDTCYSCQKRFPRLKN 424
Query: 371 ---QSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 413
Q LL+S C C + FC++CD++IHE LHNCPGCES
Sbjct: 425 QKTQELLTSSR-----YRCADCHQDFCIDCDVFIHEILHNCPGCES 465
>gi|255948596|ref|XP_002565065.1| Pc22g11160 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211592082|emb|CAP98404.1| Pc22g11160 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 450
Score = 304 bits (779), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 177/445 (39%), Positives = 255/445 (57%), Gaps = 55/445 (12%)
Query: 11 GEAEEEEED----EDDN------LNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAF 60
GE E+E+D DN GG E WE S R+WE L E G +
Sbjct: 10 GEVTEDEDDLQVTRGDNSRARRKQRGGAE-WELS----RTWETLVEGADGTINSTVEGLL 64
Query: 61 YHAQYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFV 120
+ +R L+D T +Q+G+IR+L +++DLS++ +E D RP+R + + + FV
Sbjct: 65 EAGKRKRLLKD------TTPLQRGIIRHLILILDLSQSMSEKDLRPTRYLLTLRYAQEFV 118
Query: 121 REFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLV 178
REFF+QNP+SQ+G++ ++DG+A ++ + G+P H+ A+ + G SLQN L++
Sbjct: 119 REFFEQNPISQLGVLGLRDGLALRVSAMSGNPTEHLTAIQTLKTQDPKGLPSLQNGLEMA 178
Query: 179 QGLL---SQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICK 235
+G L S PS+G REVL +Y +L + DPGDI TI KIR ++GL A++ IC+
Sbjct: 179 RGALFEFSHTPSHGTREVLFIYGSLLSSDPGDIHRTIDTLISDKIRVGIVGLGAQVAICR 238
Query: 236 HLCQDTGG----SYSVALDESHFKELIMEHAPPPPAIAEF-AIANLIKMGFPQRAGEGSI 290
LC T G +Y VAL+E HF+EL+M+ PP A ++ + ++L+ MGFP R E S
Sbjct: 239 ELCTKTNGGDETAYGVALNEQHFRELMMDVTTPPAAYSQKESASSLLMMGFPSRTVESSP 298
Query: 291 SICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEV 350
S+C+CH + G GY C RC ++VC LP +C CGL L+ S HLARSYHHLFP+ + EV
Sbjct: 299 SLCACHSKPSRG-GYLCSRCNSKVCSLPAECPSCGLTLILSTHLARSYHHLFPLINWVEV 357
Query: 351 TPLCLNDPRNRSRST-CFGCQQSLLS----------SGNKPGLYVA----CPKCKKHFCL 395
P R SRS+ CF C S S G+ V+ C C HFC+
Sbjct: 358 -PW-----RRASRSSACFACGLSFPSVPPEDHWQTAENQTKGMSVSSRYECTACHNHFCI 411
Query: 396 ECDIYIHESLHNCPGCESLRHSNPI 420
+CD++ HE +HNCPGC+S SNP+
Sbjct: 412 DCDLFAHEVVHNCPGCQS--RSNPL 434
>gi|452986441|gb|EME86197.1| hypothetical protein MYCFIDRAFT_39800 [Pseudocercospora fijiensis
CIRAD86]
Length = 465
Score = 304 bits (778), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 167/416 (40%), Positives = 234/416 (56%), Gaps = 46/416 (11%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE +R WE LQE G + + + +R L+D T +Q+G+IR+
Sbjct: 44 WESGV--NRGWE-LQESADGGIEDVLGGIEEAGKRKRLLKD------TTPLQRGIIRHTL 94
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
++IDLS A AE D RP+R + AF+RE+F+QNP+SQ+G++ ++DGVA ++D+ G
Sbjct: 95 LIIDLSAAMAEKDLRPTRHLLTISNTVAFIREYFEQNPISQLGILGMRDGVALRVSDMSG 154
Query: 151 SPESHIKALMGKLGC--SGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P HI A+ G G +SLQNALD+ + L PS+G REV+I+ ALS+ DPGDI
Sbjct: 155 NPNVHIAAVRALRGTDPKGSASLQNALDMARAALYHTPSHGTREVVIILGALSSSDPGDI 214
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS----YSVALDESHFKELIMEHAPP 264
+TI+ C + KIR ++IGL+A+M IC + + T Y+VA+DE H++EL M P
Sbjct: 215 HDTIKACIKDKIRVNIIGLAAQMQICAEIARKTNQGATNCYNVAVDEVHYRELFMGITTP 274
Query: 265 PPAIAEFAIAN------LIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELP 318
P A A L+ MGFP R EG ++C+CH + G GY C RCKA+VC LP
Sbjct: 275 PVVRATDTEAQKRNQAALLMMGFPSRIVEGKATLCACHGNLTRG-GYLCSRCKAKVCNLP 333
Query: 319 TDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQ---SLLS 375
C C L L+ S HLARSYHHLFP+ +DEV+ + + C+GC SL S
Sbjct: 334 ATCPTCDLTLILSTHLARSYHHLFPLQNWDEVS---WERAQEKGSIACYGCHSAFPSLWS 390
Query: 376 S------------------GNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 413
S G C C+ HFC++CD++ HE HNCPGC+S
Sbjct: 391 STDETNGASHTRTRPKRAEGASESSRYECRTCQNHFCIDCDVFCHEVAHNCPGCQS 446
>gi|242008465|ref|XP_002425024.1| TFIIH basal transcription factor complex p44 subunit, putative
[Pediculus humanus corporis]
gi|212508673|gb|EEB12286.1| TFIIH basal transcription factor complex p44 subunit, putative
[Pediculus humanus corporis]
Length = 401
Score = 303 bits (777), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 160/400 (40%), Positives = 243/400 (60%), Gaps = 31/400 (7%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +++WEA+++DE G + + + R+R + L R+ GL+R++Y
Sbjct: 11 WETGY--EKTWEAIRDDEGGRIEEASVNEIIEKEKRKR---QELKTGNRRL--GLMRHVY 63
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
++ID S A + D P+R K +E F+ EFF+QNP++Q+G++ ++ A L+DL G
Sbjct: 64 LIIDCSEAMLDQDLSPNRQLCTVKLLEGFIDEFFEQNPIAQMGVIITRNKRAEKLSDLAG 123
Query: 151 --SPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+ I +G L C+G SLQNAL+L L P++ REV+ + + L+TCDPG++
Sbjct: 124 VSKRQKEIIKSIGDLACTGQPSLQNALELAGKSLKLRPTHASREVIAIIANLTTCDPGNV 183
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
+TI+ KE IRCSVIGL+AE+++ K L ++T G+YSV LD+ HFK + + PP
Sbjct: 184 ADTIRFMKEENIRCSVIGLAAEVYVYKTLTKETKGTYSVILDDVHFKNQLFQQIDPPAMT 243
Query: 269 AEFAIANLIKMGFPQRA---GEGSISICSCH---KEVKVGV-GYTCPRCKARVCELPTDC 321
+ + A+LIKMGFP + + S+ +C CH EVK+ GY CP+C A+ CELP +C
Sbjct: 244 SNLS-ASLIKMGFPHHSLHDDKSSLGLCMCHLDDSEVKLKSDGYKCPQCAAKYCELPVEC 302
Query: 322 RICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPG 381
++C L LVS+PHLAR++HHLFP+ F+ D +N + CFGCQ+ S
Sbjct: 303 KVCSLTLVSAPHLARTFHHLFPVQSFERF------DGKN-AEGYCFGCQKKF--SEGDTY 353
Query: 382 LYVACPKCKKHFCLECDIYIHESLHNCPGCESLRHSNPIV 421
LY C KC++ FC CDI++H+SL CPGC +NP++
Sbjct: 354 LY-KCNKCEQRFCGVCDIFVHDSLRTCPGCA----TNPLL 388
>gi|213402509|ref|XP_002172027.1| transcription factor TFIIH complex subunit Ssl1
[Schizosaccharomyces japonicus yFS275]
gi|212000074|gb|EEB05734.1| transcription factor TFIIH complex subunit Ssl1
[Schizosaccharomyces japonicus yFS275]
Length = 422
Score = 303 bits (777), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 162/395 (41%), Positives = 232/395 (58%), Gaps = 25/395 (6%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYL 89
WE Y RSW+ ++ED G L + + +R LRD T +Q+G+IR+L
Sbjct: 39 TWEGEY--QRSWDIVKEDAEGSLAGVVEGLINAGKRKRILRD------TTPLQRGIIRHL 90
Query: 90 YIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
+V+DLS A E DFR R+ + K F+ +F+QNP+SQ+G++ +KDG+A ++D+
Sbjct: 91 ILVVDLSIAMEERDFRTKRVDLQIKYGTEFIINYFEQNPISQLGIIAMKDGIAVKISDIH 150
Query: 150 GSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIM 209
G+P+ HI L C G +SLQNAL++ + L+ I S+G REVLI++ +L + DPGDI
Sbjct: 151 GNPQDHINKLKKLRECKGMASLQNALEMARASLAHIASHGTREVLIIFGSLLSSDPGDIF 210
Query: 210 ETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELIMEHAPPP 265
+TI + I +IGLSAE+ +CK +C+ T +Y V L+E+H +EL+ME PP
Sbjct: 211 QTIDSLVKENISVHIIGLSAEVSVCKEICRRTNNGAQNAYGVILNENHLEELLMEKTIPP 270
Query: 266 PAIAEFAI-ANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRIC 324
++ I A+L+KMGFP + E S+CSCH G G+ CPRCK +VC LP +C C
Sbjct: 271 ATHSDEGIPASLVKMGFPSKVIEPFPSLCSCHSVASRG-GFHCPRCKCKVCTLPIECPGC 329
Query: 325 GLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSS------GN 378
L L+ S HLARSYHHLFP+ + E+ P + + CF CQ + N
Sbjct: 330 SLILILSTHLARSYHHLFPLKNWREI-PW----SEKPTSTYCFACQAPFPMTPQAKEDQN 384
Query: 379 KPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 413
ACP C HFC+ECD++ HE LH C GC+S
Sbjct: 385 ASSSRYACPSCGHHFCIECDVFAHEQLHECFGCQS 419
>gi|58271290|ref|XP_572801.1| RNA polymerase II transcription factor [Cryptococcus neoformans
var. neoformans JEC21]
gi|57229060|gb|AAW45494.1| RNA polymerase II transcription factor, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 460
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 171/448 (38%), Positives = 250/448 (55%), Gaps = 56/448 (12%)
Query: 4 SERKRLNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHA 63
S R++ G A + + D G +AWE Y +SW+ +QEDESG L SA
Sbjct: 28 SSRRQARGAAGKGKGKNKDT---GRQAWEGEY--QKSWDIVQEDESGSL----ESAVETL 78
Query: 64 QYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREF 123
R R R R+L++ T +++ +IR+++I+IDLS + + D+RP+R V+ + +V E+
Sbjct: 79 LARGR-RKRALMSDTP-VRRSIIRHVFIIIDLSESMLDKDYRPTRFEVILGYLRTYVVEW 136
Query: 124 FDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMG--KLGCSGDSSLQNALDLVQGL 181
FDQNPL QIG++ ++D ++ L +GGSPE ++AL KL SG+ SLQN L + +G
Sbjct: 137 FDQNPLGQIGVIAMRDRLSEVLIPMGGSPEEIVRALSDKRKLEPSGEPSLQNGLVMAKGG 196
Query: 182 LSQIPSYGHREVLILYSALSTCDPG---DIMETIQKCKESKIRCSVIGLSAEMFICKHLC 238
++ +PS E+L+++SA+ST DP I + IR S++ LS E+ ICK +
Sbjct: 197 MAHLPSTSSLEILVIFSAISTADPDGPITIHNVLDTLATGHIRTSILSLSGEIKICKQIA 256
Query: 239 QDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIAN----------------------- 275
+ TGG + VALD+ H K+L+ E PPP AN
Sbjct: 257 ERTGGKFGVALDQEHLKDLLWETIPPPATTIAPVTANVRSALAAGGRGPNQTGERAPAGD 316
Query: 276 LIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLA 335
L+ MGFP R G ++C+CH ++ G GY CPRC +++C++PTDC +CGL +VSSPHLA
Sbjct: 317 LMVMGFPIRLPLGGETMCACHGLLRKG-GYLCPRCGSKLCDVPTDCEVCGLMVVSSPHLA 375
Query: 336 RSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL------------LSSGNKPGLY 383
RS+ LFP+A + PL + D S TCFGC + G P
Sbjct: 376 RSFWFLFPVANYG---PLSIED-VVESSETCFGCDSEFSDATAINAGVAQVEDGVSPTGR 431
Query: 384 VACPKCKKHFCLECDIYIHESLHNCPGC 411
C KCK FC +CD+YIH++LH CPGC
Sbjct: 432 YRCAKCKHDFCADCDLYIHDTLHTCPGC 459
>gi|365990367|ref|XP_003672013.1| hypothetical protein NDAI_0I02010 [Naumovozyma dairenensis CBS 421]
gi|343770787|emb|CCD26770.1| hypothetical protein NDAI_0I02010 [Naumovozyma dairenensis CBS 421]
Length = 520
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 171/409 (41%), Positives = 237/409 (57%), Gaps = 32/409 (7%)
Query: 21 DDNLNG--GLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATT 78
+ NL G G AWE RSW+ + DE + + S + R++ + +V
Sbjct: 123 NQNLLGASGGYAWEDEIK--RSWDLVTVDEENDMASLVASII---EARKKRTAKKIVTP- 176
Query: 79 ARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVK 138
Q+G+IR L + +D S + AE D RP+R A++ + FV EFFDQNP+SQ+G++ +K
Sbjct: 177 --YQRGIIRTLILTLDCSESMAEKDLRPNRHAMMIQYAIDFVHEFFDQNPISQLGILVMK 234
Query: 139 DGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLIL 196
+G+A+ ++ +GG+P+ HI L + K +G+ SLQNAL++ +GLL +P++ REVLI+
Sbjct: 235 NGLAHLVSQVGGNPQDHIDVLKSIRKQEPAGNPSLQNALEMARGLLLPVPAHCTREVLII 294
Query: 197 YSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDES 252
+ +LS+ DPGDI +TI + KIR VIGLSA++ ICK LC T Y + LDE+
Sbjct: 295 FGSLSSTDPGDIHQTINSLVQEKIRVKVIGLSAQVAICKELCMATNYGDDSFYKILLDET 354
Query: 253 HFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKA 312
HFKEL E P P L+KMGFP R E S + CSCH ++ G GY CP C +
Sbjct: 355 HFKELFDEAVTPLPVNKINKGFTLVKMGFPTRIFEDSPTFCSCHSKLVYG-GYFCPSCHS 413
Query: 313 RVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRST--CFGCQ 370
+VC LPT C C L L+ S HLARSYHHL P+ F EV P N + T CF CQ
Sbjct: 414 KVCSLPTVCPCCDLMLILSTHLARSYHHLMPLKTFLEV-------PSNETFPTENCFSCQ 466
Query: 371 QSLLSSGNK------PGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 413
+ N+ C C FC++CD++IHE LHNCPGCES
Sbjct: 467 LKFPTLKNQRNGSLLTSSRYRCSSCHSDFCIDCDVFIHEILHNCPGCES 515
>gi|321261922|ref|XP_003195680.1| component of RNA polymerase transcription factor TFIIH; Ssl1p
[Cryptococcus gattii WM276]
gi|317462154|gb|ADV23893.1| Component of RNA polymerase transcription factor TFIIH, putative;
Ssl1p [Cryptococcus gattii WM276]
Length = 461
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 172/448 (38%), Positives = 249/448 (55%), Gaps = 56/448 (12%)
Query: 4 SERKRLNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHA 63
S R+ G A + + N + G +AWE Y +SW+ +QEDESG L SA
Sbjct: 28 SSRRHGRGAAGKRK---GKNKDAGRQAWEGEY--QKSWDIVQEDESGSL----ESAVETL 78
Query: 64 QYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREF 123
R R R R+L++ T +++ +IR+L+I+IDLS + + D+RPSR V+ + +V E+
Sbjct: 79 LARGR-RKRALMSDTP-VRRSIIRHLFIIIDLSESMLDKDYRPSRFEVILGYLRTYVVEW 136
Query: 124 FDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMG--KLGCSGDSSLQNALDLVQGL 181
FDQNPL QIG++ ++D ++ + +GGSPE ++AL KL SG+ SLQN L + +G
Sbjct: 137 FDQNPLGQIGVIVMRDRLSEVVIPMGGSPEEIVRALSDKRKLEPSGEPSLQNGLVMAKGG 196
Query: 182 LSQIPSYGHREVLILYSALSTCDPG---DIMETIQKCKESKIRCSVIGLSAEMFICKHLC 238
++ +PS E L+++SA+ST DP I + IR S++ LS E+ ICK +
Sbjct: 197 MAHLPSTSSLETLVIFSAISTADPDGPITIHNVLDTLVTGHIRTSILSLSGEIKICKQIA 256
Query: 239 QDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIAN----------------------- 275
+ TGG + VALD+ H K+L+ E PPP AN
Sbjct: 257 ERTGGKFGVALDQDHLKDLLWETIPPPATTITPVTANVRSALAAGGRGPNQTGGRAPAGD 316
Query: 276 LIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLA 335
L+ MGFP R G ++C+CH ++ G GY CPRC +++C++PTDC +CGL +VSSPHLA
Sbjct: 317 LMVMGFPIRLPLGGETMCACHGLLRKG-GYLCPRCGSKLCDVPTDCEVCGLMVVSSPHLA 375
Query: 336 RSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL------------LSSGNKPGLY 383
RS+ LFP+A + PL + D S TCFGC + G P
Sbjct: 376 RSFWFLFPVANYG---PLAIEDVVG-SSGTCFGCDSEFSDTSAINAGVAQVEDGVSPAGR 431
Query: 384 VACPKCKKHFCLECDIYIHESLHNCPGC 411
C KCK FC +CD+YIH++LH CPGC
Sbjct: 432 YRCAKCKHDFCADCDLYIHDTLHTCPGC 459
>gi|169776637|ref|XP_001822785.1| TFIIH basal transcription factor complex p47 subunit [Aspergillus
oryzae RIB40]
gi|83771520|dbj|BAE61652.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391874438|gb|EIT83320.1| RNA polymerase II transcription initiation protein [Aspergillus
oryzae 3.042]
Length = 458
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 170/450 (37%), Positives = 251/450 (55%), Gaps = 66/450 (14%)
Query: 11 GEAEEE-----EEDEDDN-------------------LNGGLEAWERSYADDRSWEALQE 46
G+++EE EDEDDN GG E WE S R+WE L E
Sbjct: 2 GDSDEEYIGEVSEDEDDNNVFRGSRSEGSASRAKRRKQRGGAE-WEVS----RTWETLVE 56
Query: 47 DESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRP 106
G + + +R L+D T +Q+G+IR+L ++IDLS++ E D RP
Sbjct: 57 GADGTISSTVEGLLEAGKRKRLLKD------TTPLQRGIIRHLILIIDLSQSMTEKDLRP 110
Query: 107 SRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLG 164
+R + + + VREFF+QNP+SQ+G++ ++DG+A ++DL G+P HI A+ +
Sbjct: 111 TRYLLTLRYAQELVREFFEQNPISQLGVLGLRDGLAIRISDLSGNPTEHISAIQTLRDQD 170
Query: 165 CSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSV 224
G SLQN +++ +G L PS+G RE+ I++ +L + DPGDI +TI K+R +
Sbjct: 171 PKGLPSLQNGIEMARGALFHTPSHGTREIFIIFGSLLSSDPGDIHQTIANLINDKVRVGI 230
Query: 225 IGLSAEMFICKHLCQDTGGS----YSVALDESHFKELIMEHAPPPPAIAEF-AIANLIKM 279
+GL+A++ IC+ LC T G Y VAL+E HF+EL+M+ PP ++ + ++L+ M
Sbjct: 231 VGLAAQVAICRELCAKTNGGDDTRYGVALNEQHFRELLMDVTTPPATYSQKQSASSLLMM 290
Query: 280 GFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYH 339
GFP R E S S+C+CH + G GY C RC ++VC LP +C CGL L+ S HLARSYH
Sbjct: 291 GFPSRTVETSPSLCACHSKSSCG-GYLCSRCNSKVCGLPAECPSCGLTLILSTHLARSYH 349
Query: 340 HLFPIAPFDEVTPLCLNDPRNRS--RSTCFGC----------QQSLLSSGNKPGLYVA-- 385
HLFP+ + EV P R+ S CF C Q + G+ V+
Sbjct: 350 HLFPLVNWVEV-------PWQRASRSSVCFACGIAFPPVPPKDQWQTTENQAKGMSVSSR 402
Query: 386 --CPKCKKHFCLECDIYIHESLHNCPGCES 413
C C+ HFC++CD++ HE +HNCPGC+S
Sbjct: 403 YECTVCENHFCIDCDLFAHEVVHNCPGCQS 432
>gi|401837686|gb|EJT41582.1| SSL1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 462
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 173/428 (40%), Positives = 247/428 (57%), Gaps = 33/428 (7%)
Query: 2 TNSERKRLNGEAEEEEEDEDDNLNG--GLEAWERSYADDRSWEALQEDESGFLRPIDNSA 59
+ +R R +G+ ++++ + NL G G AWE RSW+ ++ D+ G D ++
Sbjct: 47 SQGDRDR-HGQRKKKKRLSNRNLQGSNGGYAWEDEIK--RSWDLVKVDDEG-----DMAS 98
Query: 60 FYHAQYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAF 119
+ R + R+ Q+G+IR L + +D S A E D RPSR A++ + F
Sbjct: 99 LVASIVEAR-KKRTAKKNITPYQRGIIRSLILTLDCSEAMLEKDLRPSRHAMIIQYAIDF 157
Query: 120 VREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDL 177
V EFFDQNP+SQ+G++ +++G+A ++ + G+P+ HI AL + K G+ SLQNAL++
Sbjct: 158 VHEFFDQNPISQMGIIIMRNGLAQLVSQVSGNPQDHIDALKSIRKQEPKGNPSLQNALEM 217
Query: 178 VQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHL 237
+GLL +P++ REVLI++ +LST DPGDI +TI KIR V+GLSA++ ICK L
Sbjct: 218 ARGLLLPVPAHCTREVLIVFGSLSTTDPGDIHQTIDSLVSEKIRVKVLGLSAQVAICKEL 277
Query: 238 CQDTG----GSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISIC 293
C+ T Y + LDE+H KEL E P P L+KMGFP R E + + C
Sbjct: 278 CKATNYGDESFYKILLDETHLKELFNEAVTPLPVNKINKGFTLVKMGFPTRIFEDTPTFC 337
Query: 294 SCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPL 353
SCH ++ G GY CP C ++VC LPT C C L L+ S HLARSYHHL P+ F EV
Sbjct: 338 SCHSKLVYG-GYFCPNCHSKVCSLPTVCPCCDLMLILSTHLARSYHHLMPLKTFAEV--- 393
Query: 354 CLNDPRNRSRST--CFGCQQSL-LSSGNKPGLYVA-----CPKCKKHFCLECDIYIHESL 405
P + + CF CQ + +K G + C CK+ FC++CDI+IHE L
Sbjct: 394 ----PTTETFRSEDCFSCQSRFPILKNHKNGKLLTSSRYRCEDCKQEFCVDCDIFIHEIL 449
Query: 406 HNCPGCES 413
HNCPGCES
Sbjct: 450 HNCPGCES 457
>gi|440793605|gb|ELR14784.1| Ssl1like protein [Acanthamoeba castellanii str. Neff]
Length = 360
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 161/387 (41%), Positives = 232/387 (59%), Gaps = 58/387 (14%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKG---LI 86
AWER Y +R+WE +QED +G L D +F H+Q R R +R + A + +
Sbjct: 25 AWERDY--ERTWEVVQEDATGAL---DTHSFLHSQQRLRRAEREQLGGGAGGRVVRRGMQ 79
Query: 87 RYLYIVIDLSRAAAEM-DFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 145
R++++V+DLS+A + D +PSR+AV K VE+F+RE+F+QNP++Q+G+V ++DG A L
Sbjct: 80 RHVFLVVDLSQAMDDAHDMKPSRLAVTLKIVESFIREYFEQNPIAQLGIVIMRDGAAEKL 139
Query: 146 TDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDP 205
++LGG+P HI L K + +P YG RE+++L++ L+TCDP
Sbjct: 140 SELGGNPARHIGVLKDK--------------------AHVPKYGSREIVVLFAGLATCDP 179
Query: 206 GDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPP 265
DI TI K K+ IRCS++GLSAE+ IC+ L + T G+Y VAL E H+++L+ H PP
Sbjct: 180 TDIKSTISKLKKDSIRCSIVGLSAEIHICRVLAESTDGTYGVALHEGHYRQLVFAHVSPP 239
Query: 266 PAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICG 325
PA + ++LI+MGFP R + S CSCHK ++ GY C A+ CELP +C +CG
Sbjct: 240 PAQPQQVASSLIRMGFPTRKRDHFPSFCSCHKSLRRE-GY----CGAKCCELPMECPVCG 294
Query: 326 LQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVA 385
L LVSS HLARSYHHLFP+ F Q+ S+ + +Y A
Sbjct: 295 LTLVSSSHLARSYHHLFPLPLF-----------------------QAGSSTTSGAEVY-A 330
Query: 386 CPKCKKHFCLECDIYIHESLHNCPGCE 412
CP+C + FC ECD++ H+ LH C GCE
Sbjct: 331 CPRCARSFCYECDVFAHDLLHTCAGCE 357
>gi|303319293|ref|XP_003069646.1| TFIIH basal transcription factor complex p47 subunit , putative
[Coccidioides posadasii C735 delta SOWgp]
gi|240109332|gb|EER27501.1| TFIIH basal transcription factor complex p47 subunit , putative
[Coccidioides posadasii C735 delta SOWgp]
Length = 471
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 162/398 (40%), Positives = 235/398 (59%), Gaps = 37/398 (9%)
Query: 39 RSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRA 98
R+WE+L E G + + +R LRD T +Q+G+IR+L +V+DLS A
Sbjct: 60 RTWESLVEGADGTISSTVEGLLEAGKRKRLLRD------TTPLQRGIIRHLILVLDLSIA 113
Query: 99 AAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKA 158
+E D RP+R + + + FV E+F+QNP+SQ+G++ ++DG+A ++D+ G+P HI A
Sbjct: 114 MSEKDVRPTRYLLTLRYAQEFVLEYFEQNPISQLGIIGMRDGLAVRISDMSGNPSEHILA 173
Query: 159 L--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCK 216
+ + +G SLQNAL++ +G L PS+G REVLI++ L + DPGDI +TI
Sbjct: 174 IQALRTRDPTGLPSLQNALEMARGALFHTPSHGTREVLIIFGTLLSSDPGDIHKTITSLV 233
Query: 217 ESKIRCSVIGLSAEMFICKHLCQDTGG----SYSVALDESHFKELIMEHAPPPPAIAEF- 271
KIR V+GL+AE+ IC+ +C T Y VAL+E HF+EL+ME PP ++
Sbjct: 234 ADKIRVGVVGLAAEVAICREICSKTNAGDDSGYGVALNEQHFRELMMEITTPPVTRSQKQ 293
Query: 272 AIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSS 331
A+ +L+ MGFP R E S S+C+CH + G GY C RC +++C LP +C CGL L+ S
Sbjct: 294 AVNSLLMMGFPSRTVEPSQSLCACHSKPSRG-GYLCSRCGSKICTLPAECPACGLTLILS 352
Query: 332 PHLARSYHHLFPIAPFDEVTPLCLNDPRNRS--RSTCFGC----------QQSLLSSGNK 379
HLARSYHHLFP+ + EV P N++ S CF C Q G
Sbjct: 353 THLARSYHHLFPLINWVEV-------PWNKASISSNCFACGNPFPPVPVRAQWETRGGTV 405
Query: 380 PGLYVA----CPKCKKHFCLECDIYIHESLHNCPGCES 413
G+ V+ C C HFC++CD++ HE +HNCPGC+S
Sbjct: 406 KGMSVSSRYECTVCHNHFCIDCDVFAHEIVHNCPGCQS 443
>gi|121717593|ref|XP_001276096.1| transcription factor and DNA repair complex, core TFIIH, putative
[Aspergillus clavatus NRRL 1]
gi|119404294|gb|EAW14670.1| transcription factor and DNA repair complex, core TFIIH, putative
[Aspergillus clavatus NRRL 1]
Length = 456
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 165/410 (40%), Positives = 241/410 (58%), Gaps = 40/410 (9%)
Query: 26 GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGL 85
GG E WE S R+WE L E G + + +R LRD T +Q+G+
Sbjct: 40 GGAE-WEVS----RTWETLVEGADGTISSTVEGLLEAGKRKRLLRD------TTPLQRGI 88
Query: 86 IRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 145
IR+L +++DLS++ E D RP+R + + + FVREFF+QNP+SQ+G++ ++DG+A +
Sbjct: 89 IRHLVLILDLSQSMMEKDLRPTRYLLTLRYAQEFVREFFEQNPISQLGVLGLRDGLAIRI 148
Query: 146 TDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTC 203
+D+ G+P HI A+ + G SLQN L + +G L PS+G REV I++ +L +
Sbjct: 149 SDMSGNPTEHISAIQALRDHDAKGLPSLQNGLGMARGALFHTPSHGTREVFIVFGSLLSS 208
Query: 204 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGG----SYSVALDESHFKELIM 259
DPGDI TI KIR ++GL+A++ IC+ LC T G +Y VAL+E HF+EL+M
Sbjct: 209 DPGDIYRTIATLVNDKIRVRIVGLAAQVAICRELCSRTNGGDDTTYGVALNEQHFRELMM 268
Query: 260 EHAPPPPAIAEF-AIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELP 318
+ PP ++ + ++L+ MGFP R E S+C+CH + G GY+C RC ++VC LP
Sbjct: 269 DVTTPPVTYSQKQSTSSLLMMGFPSRTVESCPSLCACHSKPSCG-GYSCSRCNSKVCGLP 327
Query: 319 TDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRST-CFGC-------- 369
+C CGL L+ S HLARSYHHLFP+ + EV P + SRS+ CF C
Sbjct: 328 AECPSCGLTLILSTHLARSYHHLFPLMNWVEV-PW-----QQASRSSACFACGVYFPAVP 381
Query: 370 --QQSLLSSGNKPGLYVA----CPKCKKHFCLECDIYIHESLHNCPGCES 413
Q + G+ V+ C CK HFC++CD++ HE +HNCPGC+S
Sbjct: 382 PNDQWQTTESQAKGMSVSSRYECTVCKNHFCIDCDLFAHEVVHNCPGCQS 431
>gi|320040921|gb|EFW22854.1| RNA polymerase TFIIH complex subunit Ssl1 [Coccidioides posadasii
str. Silveira]
Length = 471
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 162/398 (40%), Positives = 235/398 (59%), Gaps = 37/398 (9%)
Query: 39 RSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRA 98
R+WE+L E G + + +R LRD T +Q+G+IR+L +V+DLS A
Sbjct: 60 RTWESLVEGADGTISSTVEGLLEAGKRKRLLRD------TTPLQRGIIRHLILVLDLSIA 113
Query: 99 AAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKA 158
+E D RP+R + + + FV E+F+QNP+SQ+G++ ++DG+A ++D+ G+P HI A
Sbjct: 114 MSEKDVRPTRYLLTLRYAQEFVLEYFEQNPISQLGIIGMRDGLAVRISDMSGNPSEHILA 173
Query: 159 L--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCK 216
+ + +G SLQNAL++ +G L PS+G REVLI++ L + DPGDI +TI
Sbjct: 174 IQALRTRDPTGLPSLQNALEMARGALFHTPSHGTREVLIIFGTLLSSDPGDIHKTITSLV 233
Query: 217 ESKIRCSVIGLSAEMFICKHLCQDTGG----SYSVALDESHFKELIMEHAPPPPAIAEF- 271
KIR V+GL+AE+ IC+ +C T Y VAL+E HF+EL+ME PP ++
Sbjct: 234 ADKIRVGVVGLAAEVAICREICSKTNAGDDSGYGVALNEQHFRELMMEITTPPVTRSQKQ 293
Query: 272 AIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSS 331
A+ +L+ MGFP R E S S+C+CH + G GY C RC +++C LP +C CGL L+ S
Sbjct: 294 AVNSLLMMGFPSRTVEPSQSLCACHSKPSRG-GYLCSRCGSKICTLPAECPACGLTLILS 352
Query: 332 PHLARSYHHLFPIAPFDEVTPLCLNDPRNRS--RSTCFGC----------QQSLLSSGNK 379
HLARSYHHLFP+ + EV P N++ S CF C Q G
Sbjct: 353 THLARSYHHLFPLINWVEV-------PWNKASISSNCFACGNPFPPVPVRAQWETRGGTV 405
Query: 380 PGLYVA----CPKCKKHFCLECDIYIHESLHNCPGCES 413
G+ V+ C C HFC++CD++ HE +HNCPGC+S
Sbjct: 406 KGMSVSSRYECTVCHNHFCIDCDVFAHEIVHNCPGCQS 443
>gi|395517618|ref|XP_003762972.1| PREDICTED: general transcription factor IIH subunit 2 [Sarcophilus
harrisii]
Length = 395
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 169/402 (42%), Positives = 239/402 (59%), Gaps = 35/402 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+ HI +L + C G+ SL N+L L L +P + REVLI++ +L+TCDP +I
Sbjct: 123 NARKHITSLKKAVDMTCHGEPSLYNSLSLAMQTLKHMPGHTSREVLIIFGSLTTCDPSNI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
+ I+ K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA
Sbjct: 183 YDLIKSLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPAS 242
Query: 269 AEFAIANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCEL 317
+ +LI+MGFPQ + S S+ + G+ GY CP+C+A+ EL
Sbjct: 243 SSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDSSTEPGLTLGGYFCPQCRAKYSEL 301
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P +C+ICGL LVS+PHLARSYHHLFP+ F EV+ N R C GC L
Sbjct: 302 PVECKICGLTLVSAPHLARSYHHLFPLEAFQEVSLEEYNGER-----FCQGC----LGEL 352
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLRHSNP 419
+Y+ C C+ FC++CD++IH+SLH CPGC H NP
Sbjct: 353 KDQHVYI-CTVCQNVFCVDCDLFIHDSLHCCPGC---IHKNP 390
>gi|58271288|ref|XP_572800.1| RNA polymerase II transcription factor [Cryptococcus neoformans
var. neoformans JEC21]
gi|134114810|ref|XP_773703.1| hypothetical protein CNBH1580 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256331|gb|EAL19056.1| hypothetical protein CNBH1580 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229059|gb|AAW45493.1| RNA polymerase II transcription factor, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 460
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 170/448 (37%), Positives = 250/448 (55%), Gaps = 56/448 (12%)
Query: 4 SERKRLNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHA 63
S R++ G A + + D G +AWE Y +SW+ +QEDESG L SA
Sbjct: 28 SSRRQARGAAGKGKGKNKDT---GRQAWEGEY--QKSWDIVQEDESGSL----ESAVETL 78
Query: 64 QYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREF 123
R R R R+L++ T +++ +IR+++I+IDLS + + D+RP+R V+ + +V E+
Sbjct: 79 LARGR-RKRALMSDTP-VRRSIIRHVFIIIDLSESMLDKDYRPTRFEVILGYLRTYVVEW 136
Query: 124 FDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMG--KLGCSGDSSLQNALDLVQGL 181
FDQNPL QIG++ ++D ++ L +GG+PE ++AL KL SG+ SLQN L + +G
Sbjct: 137 FDQNPLGQIGVIAMRDRLSEVLIPMGGNPEEIVRALSDKRKLEPSGEPSLQNGLVMAKGG 196
Query: 182 LSQIPSYGHREVLILYSALSTCDPG---DIMETIQKCKESKIRCSVIGLSAEMFICKHLC 238
++ +PS E+L+++SA+ST DP I + IR S++ LS E+ ICK +
Sbjct: 197 MAHLPSTSSLEILVIFSAISTADPDGPITIHNVLDTLATGHIRTSILSLSGEIKICKQIA 256
Query: 239 QDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIAN----------------------- 275
+ TGG + VALD+ H K+L+ E PPP AN
Sbjct: 257 ERTGGKFGVALDQEHLKDLLWETIPPPATTIAPVTANVRSALAAGGRGPNQTGERAPAGD 316
Query: 276 LIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLA 335
L+ MGFP R G ++C+CH ++ G GY CPRC +++C++PTDC +CGL +VSSPHLA
Sbjct: 317 LMVMGFPIRLPLGGETMCACHGLLRKG-GYLCPRCGSKLCDVPTDCEVCGLMVVSSPHLA 375
Query: 336 RSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL------------LSSGNKPGLY 383
RS+ LFP+A + PL + D S TCFGC + G P
Sbjct: 376 RSFWFLFPVANYG---PLSIED-VVESSETCFGCDSEFSDATAINAGVAQVEDGVSPTGR 431
Query: 384 VACPKCKKHFCLECDIYIHESLHNCPGC 411
C KCK FC +CD+YIH++LH CPGC
Sbjct: 432 YRCAKCKHDFCADCDLYIHDTLHTCPGC 459
>gi|440631747|gb|ELR01666.1| hypothetical protein GMDG_00042 [Geomyces destructans 20631-21]
Length = 491
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 161/409 (39%), Positives = 237/409 (57%), Gaps = 40/409 (9%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYL 89
AWE RSW+ + E G L + +R LRD T +Q+G+IR+L
Sbjct: 60 AWEDI---QRSWDTVVEGADGSLSSTVEGLLEAGKRQRLLRD------TTPLQRGIIRHL 110
Query: 90 YIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
+++DLS A E D RP+R + + +F+ EFF+QNP+SQ+G++ ++DG+A ++ L
Sbjct: 111 ILILDLSFAMTEKDLRPTRYLLTLRHATSFISEFFEQNPISQLGILGMRDGLAKPISPLS 170
Query: 150 GSPESHIKALMGKLGCS---GDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPG 206
G+P H+ AL GKL G SLQNAL++ + L PS+G REVLI+ AL + DPG
Sbjct: 171 GTPTVHLGAL-GKLRTQDPQGSPSLQNALEMARASLFHAPSHGTREVLIISGALLSSDPG 229
Query: 207 DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPP 266
DI TI +IR S IGL+A++ I +C T G YSVAL E HF+ L+M PPP
Sbjct: 230 DIHTTISSLTSDRIRVSAIGLAAQVAILSEICTKTKGDYSVALHEEHFRALLMGATTPPP 289
Query: 267 AIA-EFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICG 325
A E ++L+ MGFP R ++++C+CH ++ G GY C RC ++VC LP +C CG
Sbjct: 290 TRAKEQNQSSLLMMGFPSRTVATAVTLCACHSKLTRG-GYLCSRCGSKVCSLPAECPACG 348
Query: 326 LQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC---------------- 369
L L+ S HLARSYHHLFP+ + EV+ ++ +CF C
Sbjct: 349 LTLILSTHLARSYHHLFPLRNWREVS---WSEAAGSGVGSCFACGVGFNKPPPRQVVEGK 405
Query: 370 -----QQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 413
+++++ + ++ G Y AC C +HFC++CD++ HE +HNCPGC+S
Sbjct: 406 KEGGRREAMMKAVSESGRY-ACEVCGEHFCIDCDVFAHEVVHNCPGCQS 453
>gi|323303957|gb|EGA57737.1| Ssl1p [Saccharomyces cerevisiae FostersB]
Length = 461
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 168/401 (41%), Positives = 232/401 (57%), Gaps = 27/401 (6%)
Query: 25 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKG 84
NGG AWE RSW+ ++ D+ G + A A + R+ Q+G
Sbjct: 71 NGGY-AWEDEIK--RSWDLVKVDDEG------DMASLVASIXEARKKRTAKKNITPYQRG 121
Query: 85 LIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 144
+IR L + +D S A E D RP+R A++ + FV EFFDQNP+SQ+G++ +++G+A
Sbjct: 122 IIRSLILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQL 181
Query: 145 LTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALST 202
++ + G+P+ HI AL + K G+ SLQNAL++ +GLL +P++ REVLI++ +LST
Sbjct: 182 VSQVSGNPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVFGSLST 241
Query: 203 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELI 258
DPGDI +TI KIR V+GLSA++ ICK LC+ T Y + LDE+H KEL
Sbjct: 242 TDPGDIHQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHLKELF 301
Query: 259 MEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELP 318
E P P L+KMGFP R E + + CSCH ++ G GY CP C ++VC LP
Sbjct: 302 NEAVTPLPVNKINKGFTLVKMGFPTRIFEDTPTFCSCHSKLVYG-GYFCPNCHSKVCSLP 360
Query: 319 TDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL-LSSG 377
T C C L L+ S HLARSYHHL P+ F EV + RS CF CQ +
Sbjct: 361 TVCPCCDLMLILSTHLARSYHHLMPLKTFAEVP----TTEKFRSED-CFSCQSRFPILKN 415
Query: 378 NKPGLYVA-----CPKCKKHFCLECDIYIHESLHNCPGCES 413
+K G + C CK+ FC++CD++IHE LHNCPGCES
Sbjct: 416 HKNGKLLTSSRYRCEDCKQEFCVDCDVFIHEILHNCPGCES 456
>gi|195377775|ref|XP_002047663.1| GJ11798 [Drosophila virilis]
gi|194154821|gb|EDW70005.1| GJ11798 [Drosophila virilis]
Length = 442
Score = 301 bits (772), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 160/420 (38%), Positives = 249/420 (59%), Gaps = 38/420 (9%)
Query: 13 AEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDR 72
A++E++D+ + WE Y +++WEA++ED+ G L D + Q +R R
Sbjct: 2 ADDEQDDQKEY------RWETGY--EKTWEAIKEDDDGLL---DGAIAEIIQKAKRKRQA 50
Query: 73 SLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQI 132
+ + G++R+++IV+D S + + D +P+R+ K +E F+ EFFDQNP+SQ+
Sbjct: 51 DKIKQN---RLGMMRHMFIVLDCSESMSVPDLKPTRLLCTLKLLEIFIEEFFDQNPISQL 107
Query: 133 GLVTVKDGVANCLTDLGGSPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGH 190
G++ +K A +T+L G+ H+KAL G + + + SLQN LDL L +PS+
Sbjct: 108 GIIALKAKRAEKVTELTGTSRVHLKALAGLANVSLTSEPSLQNGLDLALKTLKVVPSHAS 167
Query: 191 REVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALD 250
RE++I+ +L+TCDP DI +TI + K +IRCSVI LSAE+ IC++L Q T G++ +D
Sbjct: 168 REIVIIMGSLTTCDPVDINQTIDELKRERIRCSVISLSAEIHICRYLTQQTMGTFGAVMD 227
Query: 251 ESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGE-----GSISICSCHKE------V 299
++H+++ ++ PPPA A+ +LI+MGFP E +S+C CH E
Sbjct: 228 DAHYRDQLLAQVDPPPA-AKTQDNSLIRMGFPHSKNEVEGKDAPLSMCMCHIENLDEPSE 286
Query: 300 KVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIA-----PFDEVTPLC 354
G+ CP+C ++ CELP +C+ CGL LVS+PHLARSYHHLFP+ PF+ V P
Sbjct: 287 LSTTGHHCPQCNSKYCELPVECQCCGLTLVSAPHLARSYHHLFPVPNFEELPFESVPPAA 346
Query: 355 LNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESL 414
P S C+GC + L + +K C C + FC++CDI+IHE+LH C GC ++
Sbjct: 347 ---PDCGSLRKCYGCIKVLNAQTDKS--VFKCGYCNQFFCIDCDIFIHETLHACVGCNTI 401
>gi|6323033|ref|NP_013105.1| Ssl1p [Saccharomyces cerevisiae S288c]
gi|417813|sp|Q04673.1|SSL1_YEAST RecName: Full=Suppressor of stem-loop protein 1; AltName:
Full=General transcription and DNA repair factor IIH
subunit SSL1; Short=TFIIH subunit SSL1
gi|2696|emb|CAA78992.1| suppressor of stem-loop [Saccharomyces cerevisiae]
gi|1360294|emb|CAA97527.1| SSL1 [Saccharomyces cerevisiae]
gi|190406046|gb|EDV09313.1| suppressor of stem-loop protein 1 [Saccharomyces cerevisiae
RM11-1a]
gi|256272337|gb|EEU07321.1| Ssl1p [Saccharomyces cerevisiae JAY291]
gi|259147994|emb|CAY81243.1| Ssl1p [Saccharomyces cerevisiae EC1118]
gi|285813427|tpg|DAA09323.1| TPA: Ssl1p [Saccharomyces cerevisiae S288c]
gi|323308054|gb|EGA61307.1| Ssl1p [Saccharomyces cerevisiae FostersO]
gi|323332472|gb|EGA73880.1| Ssl1p [Saccharomyces cerevisiae AWRI796]
gi|365764293|gb|EHN05817.1| Ssl1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|384214|prf||1905312A SSL1 gene
Length = 461
Score = 301 bits (772), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 168/401 (41%), Positives = 234/401 (58%), Gaps = 27/401 (6%)
Query: 25 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKG 84
NGG AWE RSW+ ++ D+ G D ++ + R + R+ Q+G
Sbjct: 71 NGGY-AWEDEIK--RSWDLVKVDDEG-----DMASLVASIVEAR-KKRTAKKNITPYQRG 121
Query: 85 LIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 144
+IR L + +D S A E D RP+R A++ + FV EFFDQNP+SQ+G++ +++G+A
Sbjct: 122 IIRSLILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQL 181
Query: 145 LTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALST 202
++ + G+P+ HI AL + K G+ SLQNAL++ +GLL +P++ REVLI++ +LST
Sbjct: 182 VSQVSGNPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVFGSLST 241
Query: 203 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELI 258
DPGDI +TI KIR V+GLSA++ ICK LC+ T Y + LDE+H KEL
Sbjct: 242 TDPGDIHQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHLKELF 301
Query: 259 MEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELP 318
E P P L+KMGFP R E + + CSCH ++ G GY CP C ++VC LP
Sbjct: 302 NEAVTPLPVNKINKGFTLVKMGFPTRIFEDTPTFCSCHSKLVYG-GYFCPNCHSKVCSLP 360
Query: 319 TDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL-LSSG 377
T C C L L+ S HLARSYHHL P+ F EV + RS CF CQ +
Sbjct: 361 TVCPCCDLMLILSTHLARSYHHLMPLKTFAEVP----TTEKFRSED-CFSCQSRFPILKN 415
Query: 378 NKPGLYVA-----CPKCKKHFCLECDIYIHESLHNCPGCES 413
+K G + C CK+ FC++CD++IHE LHNCPGCES
Sbjct: 416 HKNGKLLTSSRYRCEDCKQEFCVDCDVFIHEILHNCPGCES 456
>gi|403214446|emb|CCK68947.1| hypothetical protein KNAG_0B05150 [Kazachstania naganishii CBS
8797]
Length = 469
Score = 301 bits (772), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 165/400 (41%), Positives = 231/400 (57%), Gaps = 26/400 (6%)
Query: 26 GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGL 85
G AWE RSW+ + D+ G + + S + R RD Q+G+
Sbjct: 80 SGGYAWEDEIK--RSWDLVTVDDEGDMTSLVASLVEARKKRAAKRD------VTPYQRGI 131
Query: 86 IRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 145
IR L + +D S + E D RP+R A++ + FV EFFD+NP+SQIG+V +++G+A+ +
Sbjct: 132 IRTLILTLDCSESMTEKDLRPNRHAMMIQYAIDFVHEFFDENPISQIGIVIMRNGLAHLV 191
Query: 146 TDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTC 203
+ + G+P+ H+ AL M K G+ SLQNAL+L +GLL +PS+ REVLI++ +LS+
Sbjct: 192 SSVSGNPQDHLDALKHMRKQEPKGNPSLQNALELARGLLLPVPSHSTREVLIIFGSLSST 251
Query: 204 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELIM 259
DPGDI +TI + KIR VIGLSA++ +CK LC+ T Y + LDE+HFK+L
Sbjct: 252 DPGDIHQTIASLVDEKIRVKVIGLSAQVAVCKELCKLTNFGDDSFYKILLDETHFKDLFD 311
Query: 260 EHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPT 319
E P P L+KMGFP R E + CSCH ++ G GY CP C +VC LPT
Sbjct: 312 EAVTPLPVNKINKGFTLVKMGFPTRVFESVPTFCSCHSKLIYG-GYFCPNCHNKVCSLPT 370
Query: 320 DCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQS--LLSSG 377
C C L L+ S HLARSYHHL P+ F+EV + CF CQ+ +L +
Sbjct: 371 VCPCCDLTLILSTHLARSYHHLMPLKTFNEV-----DAKETFPTENCFACQRRFPILKNH 425
Query: 378 NKPGLYVA----CPKCKKHFCLECDIYIHESLHNCPGCES 413
L + C C++ FC++CD++IHE LHNCPGCES
Sbjct: 426 KSDQLLTSSRYRCDDCRQDFCIDCDVFIHEVLHNCPGCES 465
>gi|410083393|ref|XP_003959274.1| hypothetical protein KAFR_0J00710 [Kazachstania africana CBS 2517]
gi|372465865|emb|CCF60139.1| hypothetical protein KAFR_0J00710 [Kazachstania africana CBS 2517]
Length = 469
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 166/401 (41%), Positives = 236/401 (58%), Gaps = 30/401 (7%)
Query: 27 GLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLI 86
G AWE RSW+ + DE G + + S ++R RS+ Q+G+I
Sbjct: 80 GGYAWEDEIK--RSWDLVTLDEDGDMVSLVASLI--EARKKRAAKRSVTP----FQRGII 131
Query: 87 RYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLT 146
R L + +D S + E D RPSR A++ + FV EFFDQNP+SQIG+V +++G+A ++
Sbjct: 132 RNLILTLDCSESMLEKDLRPSRHAMMIQYAIDFVHEFFDQNPISQIGIVIMRNGLAQLVS 191
Query: 147 DLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCD 204
+ G+P+ HI AL + K G+ SLQNAL++ +GLL +PS+ REVLI++ +LS+ D
Sbjct: 192 QVSGNPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPSHCTREVLIIFGSLSSTD 251
Query: 205 PGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELIME 260
PGD+ +TI +IR VIGLSA++ ICK LC+ T Y++ LDE+HFKEL E
Sbjct: 252 PGDVHQTINSLVRERIRTRVIGLSAQVAICKELCKQTNYGDESYYNILLDETHFKELFDE 311
Query: 261 HAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTD 320
P P L+KMGFP R E + + CSCH ++ G GY CP C +++C LPT
Sbjct: 312 AVTPLPVNKINKGFTLVKMGFPTRIFEDTPTFCSCHSKLIYG-GYFCPNCHSKICSLPTV 370
Query: 321 CRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRST--CFGCQQSL-LSSG 377
C C L L+ S HLARSYHHL P+ F EV P + + T C+ CQ+ +
Sbjct: 371 CPCCDLMLILSTHLARSYHHLMPLKTFKEV-------PSDETFKTENCYSCQKKFPILKN 423
Query: 378 NKPGLYVA-----CPKCKKHFCLECDIYIHESLHNCPGCES 413
+K G + C C++ FC++CD++IHE LHNCPGCE+
Sbjct: 424 HKTGNLLTSSRYRCSDCQEDFCIDCDLFIHEVLHNCPGCEA 464
>gi|323336560|gb|EGA77826.1| Ssl1p [Saccharomyces cerevisiae Vin13]
Length = 461
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 168/401 (41%), Positives = 234/401 (58%), Gaps = 27/401 (6%)
Query: 25 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKG 84
NGG AWE RSW+ ++ D+ G D ++ + R + R+ Q+G
Sbjct: 71 NGGY-AWEDEIK--RSWDLVKVDDEG-----DMASLVASIVEAR-KKRTAKKNITPYQRG 121
Query: 85 LIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 144
+IR L + +D S A E D RP+R A++ + FV EFFDQNP+SQ+G++ +++G+A
Sbjct: 122 IIRSLILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQL 181
Query: 145 LTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALST 202
++ + G+P+ HI AL + K G+ SLQNAL++ +GLL +P++ REVLI++ +LST
Sbjct: 182 VSQVSGNPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVFGSLST 241
Query: 203 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELI 258
DPGDI +TI KIR V+GLSA++ ICK LC+ T Y + LDE+H KEL
Sbjct: 242 TDPGDIHQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHLKELF 301
Query: 259 MEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELP 318
E P P L+KMGFP R E + + CSCH ++ G GY CP C ++VC LP
Sbjct: 302 NEAVTPLPVNKINKGFTLVKMGFPTRIFEDTPTFCSCHSKLVYG-GYFCPNCHSKVCSLP 360
Query: 319 TDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL-LSSG 377
T C C L L+ S HLARSYHHL P+ F EV + RS CF CQ +
Sbjct: 361 TVCPCCDLMLILSTHLARSYHHLMPLKTFAEVP----TTEKFRSED-CFSCQSRFPILKN 415
Query: 378 NKPGLYVA-----CPKCKKHFCLECDIYIHESLHNCPGCES 413
+K G + C CK+ FC++CD++IHE LHNCPGCES
Sbjct: 416 HKNGKLLTSSRYRCEDCKQEFCVDCDVFIHEILHNCPGCES 456
>gi|195592457|ref|XP_002085951.1| GD15058 [Drosophila simulans]
gi|194197960|gb|EDX11536.1| GD15058 [Drosophila simulans]
Length = 438
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 162/421 (38%), Positives = 252/421 (59%), Gaps = 35/421 (8%)
Query: 13 AEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDR 72
A++E+ED+ + WE Y +++WEA+++DE G L D + Q +R R
Sbjct: 2 ADDEQEDQKEY------RWETGY--EKTWEAIKDDEDGML---DGAIAEIIQKAKRQRQ- 49
Query: 73 SLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQI 132
T + + G++R++++V+D S + + D +P+R+ K +E F+ EFFDQNP+SQ+
Sbjct: 50 --AQKTKQNRLGMMRHMFVVLDCSESMSVPDLKPTRLRCTVKLLELFIEEFFDQNPISQL 107
Query: 133 GLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGH 190
GL+ +K A +T+L G+ H+KAL + + + + SLQN LDL L +PS+
Sbjct: 108 GLIALKAKRAEKVTELTGTSRVHLKALESLANVSLTSEPSLQNGLDLALKSLKVVPSHAS 167
Query: 191 REVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALD 250
RE++I+ +L+TCDP DI TI + K+ IRCSVI LSAE+ + ++L Q T G++ LD
Sbjct: 168 REIVIIMGSLTTCDPVDINLTIDELKKEGIRCSVISLSAEIHVARYLTQQTMGTFGAVLD 227
Query: 251 ESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGE-----GSISICSCHKE------V 299
++HF++ +M PPPA A+ +LI+MGFP E +S+C CH E
Sbjct: 228 DAHFRDQLMSQVDPPPA-AKTQHNSLIRMGFPHTKNEVEGKDAPLSMCMCHIENLEEPSE 286
Query: 300 KVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEV----TPLCL 355
G+ CP+C ++ CELP +C+ CGL LVS+PHLARSYHHLFP+ F+E+ P
Sbjct: 287 LTTTGHHCPQCNSKYCELPVECQSCGLTLVSAPHLARSYHHLFPVPNFEELPFEAMPASS 346
Query: 356 NDPRNRSRSTCFGCQQSLLSSGNKPGLYVA--CPKCKKHFCLECDIYIHESLHNCPGCES 413
+D + R C+GC ++L +K V C CK+ FC++CDI+IH++LH C GC +
Sbjct: 347 SDFTSDVRE-CYGCAKALGQGVDKVADKVVFRCGFCKQFFCVDCDIFIHDTLHACVGCNT 405
Query: 414 L 414
+
Sbjct: 406 I 406
>gi|195019313|ref|XP_001984954.1| GH16776 [Drosophila grimshawi]
gi|193898436|gb|EDV97302.1| GH16776 [Drosophila grimshawi]
Length = 443
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 163/420 (38%), Positives = 248/420 (59%), Gaps = 38/420 (9%)
Query: 13 AEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDR 72
A++E++D+ + WE Y +++WEA++ED+ G L D + Q +R R
Sbjct: 2 ADDEQDDQKEY------RWETGY--EKTWEAIKEDDDGLL---DGAIAELIQKAKRKRQ- 49
Query: 73 SLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQI 132
T + + G++R+++IV+D S A + D +P+R+ K +E F+ EFFDQNP+SQ+
Sbjct: 50 --AEKTKQNRLGMMRHMFIVLDCSEAMSVPDLKPTRLLCTLKLLEIFIEEFFDQNPISQL 107
Query: 133 GLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGH 190
G++ +K A +T+L G+ H+KAL M + + + SLQN LDL L +PS+
Sbjct: 108 GIIALKAKRAEKITELTGTSRVHLKALAGMANVSLTSEPSLQNGLDLALKTLKVVPSHAS 167
Query: 191 REVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALD 250
RE++I+ +L+TCDP DI TI + K+ +IRCSVI LSAE+ IC++L Q T G++ LD
Sbjct: 168 REIVIIMGSLTTCDPVDINLTIDELKKERIRCSVISLSAEIHICRYLTQQTMGTFGAVLD 227
Query: 251 ESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGS-----ISICSCHKEV------ 299
+SH+++ ++ PPPA A+ +LI+MGFP E +S+C CH E
Sbjct: 228 DSHYRDQLLSQVDPPPA-AKTQDNSLIRMGFPHSKNEVEGKDEPLSMCMCHIENLEEPSG 286
Query: 300 KVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIA-----PFDEVTPLC 354
G+ CP+C ++ CELP +C+ CGL LVS+PHLARSYHHLFP+ PF+ V P
Sbjct: 287 LSTTGHHCPQCNSKYCELPVECQCCGLTLVSAPHLARSYHHLFPVPNFEELPFESVPPAA 346
Query: 355 LNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESL 414
P S C+ C + L +K C C + FC++CDI+IHE+LH C GC ++
Sbjct: 347 ---PDCGSLRKCYACIKVLNGLTDKS--VFKCGYCNQFFCIDCDIFIHETLHACVGCNTI 401
>gi|147862851|emb|CAN82988.1| hypothetical protein VITISV_011714 [Vitis vinifera]
Length = 199
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 145/193 (75%), Positives = 156/193 (80%)
Query: 232 FICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSIS 291
F+ C T S L +SHFKEL++EHAPPPPAIAEFAIANLIKMGFPQRA EG IS
Sbjct: 6 FLLIQYCFITNISVLYLLLQSHFKELLLEHAPPPPAIAEFAIANLIKMGFPQRAAEGVIS 65
Query: 292 ICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVT 351
ICSCHKE KVG GYTCPRCKARVCELPT+CRICGL LVSSPHLARSYHHLFPI PFDEV+
Sbjct: 66 ICSCHKEAKVGGGYTCPRCKARVCELPTECRICGLTLVSSPHLARSYHHLFPIPPFDEVS 125
Query: 352 PLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
LN+P RS CFGCQ+SLL GNKP L VACPKCK+HFCL+CDIYIHESLHNCPGC
Sbjct: 126 LSLLNNPHQRSSRACFGCQESLLIPGNKPTLCVACPKCKQHFCLDCDIYIHESLHNCPGC 185
Query: 412 ESLRHSNPIVANE 424
ES RHS + E
Sbjct: 186 ESFRHSKIVSVTE 198
>gi|392297981|gb|EIW09080.1| Ssl1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 461
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 168/401 (41%), Positives = 234/401 (58%), Gaps = 27/401 (6%)
Query: 25 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKG 84
NGG AWE RSW+ ++ D+ G D ++ + R + R+ Q+G
Sbjct: 71 NGGY-AWEDEIK--RSWDLVKVDDEG-----DMASLVASIVEAR-KKRTAKKNITPYQRG 121
Query: 85 LIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 144
+IR L + +D S A E D RP+R A++ + FV EFFDQNP+SQ+G++ +++G+A
Sbjct: 122 IIRSLILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQL 181
Query: 145 LTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALST 202
++ + G+P+ HI AL + K G+ SLQNAL++ +GLL +P++ REVLI++ +LST
Sbjct: 182 VSQVSGNPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVFGSLST 241
Query: 203 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELI 258
DPGDI +TI KIR V+GLSA++ ICK LC+ T Y + LDE+H KEL
Sbjct: 242 TDPGDIHQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHLKELF 301
Query: 259 MEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELP 318
E P P L+KMGFP R E + + CSCH ++ G GY CP C ++VC LP
Sbjct: 302 NEAVTPLPVNKINKGFTLVKMGFPTRIFEDTPTFCSCHSKLVYG-GYFCPNCHSKVCSLP 360
Query: 319 TDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL-LSSG 377
T C C L L+ S HLARSYHHL P+ F EV + RS CF CQ +
Sbjct: 361 TVCPCCDLMLILSTHLARSYHHLMPLKTFAEVP----TTEKFRSED-CFSCQSRFPILKN 415
Query: 378 NKPGLYVA-----CPKCKKHFCLECDIYIHESLHNCPGCES 413
+K G + C CK+ FC++CD++IHE LHNCPGCES
Sbjct: 416 HKNGKLLTSSRYRCEDCKQEFCVDCDVFIHEILHNCPGCES 456
>gi|349579731|dbj|GAA24892.1| K7_Ssl1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 461
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 168/401 (41%), Positives = 234/401 (58%), Gaps = 27/401 (6%)
Query: 25 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKG 84
NGG AWE RSW+ ++ D+ G D ++ + R + R+ Q+G
Sbjct: 71 NGGY-AWEDEIK--RSWDLVKVDDEG-----DMASLVASIVEAR-KKRTAKKNITPYQRG 121
Query: 85 LIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 144
+IR L + +D S A E D RP+R A++ + FV EFFDQNP+SQ+G++ +++G+A
Sbjct: 122 IIRSLILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQL 181
Query: 145 LTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALST 202
++ + G+P+ HI AL + K G+ SLQNAL++ +GLL +P++ REVLI++ +LST
Sbjct: 182 VSQVSGNPQGHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVFGSLST 241
Query: 203 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELI 258
DPGDI +TI KIR V+GLSA++ ICK LC+ T Y + LDE+H KEL
Sbjct: 242 TDPGDIHQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHLKELF 301
Query: 259 MEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELP 318
E P P L+KMGFP R E + + CSCH ++ G GY CP C ++VC LP
Sbjct: 302 NEAVTPLPVNKINKGFTLVKMGFPTRIFEDTPTFCSCHSKLVYG-GYFCPNCHSKVCSLP 360
Query: 319 TDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL-LSSG 377
T C C L L+ S HLARSYHHL P+ F EV + RS CF CQ +
Sbjct: 361 TVCPCCDLMLILSTHLARSYHHLMPLKTFAEVP----TTEKFRSED-CFSCQSRFPILKN 415
Query: 378 NKPGLYVA-----CPKCKKHFCLECDIYIHESLHNCPGCES 413
+K G + C CK+ FC++CD++IHE LHNCPGCES
Sbjct: 416 HKNGKLLTSSRYRCEDCKQEFCVDCDVFIHEILHNCPGCES 456
>gi|151941173|gb|EDN59551.1| transcription initiation factor TFIIH subunit [Saccharomyces
cerevisiae YJM789]
Length = 461
Score = 301 bits (770), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 168/401 (41%), Positives = 233/401 (58%), Gaps = 27/401 (6%)
Query: 25 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKG 84
NGG AWE RSW+ ++ D+ G D ++ + R + R+ Q+G
Sbjct: 71 NGGY-AWEDEIK--RSWDLVKVDDEG-----DMASLVASIVEAR-KKRTAKKNITPYQRG 121
Query: 85 LIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 144
+IR L + +D S A E D RP+R A++ + FV EFFDQNP+SQ+G++ +++G+A
Sbjct: 122 IIRSLILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQL 181
Query: 145 LTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALST 202
++ + G+P+ HI AL + K G+ SLQNAL++ +GLL +P++ REVLI++ +LST
Sbjct: 182 VSQVSGNPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVFGSLST 241
Query: 203 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELI 258
DPGDI +TI KIR V+GLSA++ ICK LC+ T Y + LDE+H KEL
Sbjct: 242 TDPGDIHQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHLKELF 301
Query: 259 MEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELP 318
E P P L+KMGFP R E + + CSCH ++ G GY CP C ++VC LP
Sbjct: 302 NEAVTPLPVNKINKGFTLVKMGFPTRIFEDTPTFCSCHSKLVYG-GYFCPNCHSKVCSLP 360
Query: 319 TDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL-LSSG 377
T C C L L+ S HLARSYHHL P+ F EV P P CF CQ +
Sbjct: 361 TVCPCCDLMLILSTHLARSYHHLMPLKTFAEV-PTTEKFP----SEDCFSCQSRFPILKN 415
Query: 378 NKPGLYVA-----CPKCKKHFCLECDIYIHESLHNCPGCES 413
+K G + C CK+ FC++CD++IHE LHNCPGCES
Sbjct: 416 HKNGKLLTSSRYRCEDCKQEFCVDCDVFIHEILHNCPGCES 456
>gi|194752572|ref|XP_001958595.1| GF11005 [Drosophila ananassae]
gi|190625877|gb|EDV41401.1| GF11005 [Drosophila ananassae]
Length = 422
Score = 301 bits (770), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 159/412 (38%), Positives = 245/412 (59%), Gaps = 29/412 (7%)
Query: 20 EDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTA 79
+D+N + WE Y +++WEA+++DE G L D + Q +R R L T
Sbjct: 3 DDENEDQKEYRWETGY--EKTWEAIKDDEDGLL---DGAIAEIIQKAKRQR---LAQKTK 54
Query: 80 RIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKD 139
+ + G++R+LY+++D S + + D +P+R+ K +E F+ EFFDQNP+SQ+G++ +K
Sbjct: 55 QNRLGMMRHLYVIVDCSESMSVPDLKPTRLRCTIKLLEQFIEEFFDQNPISQLGIIALKA 114
Query: 140 GVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILY 197
A +T+L G+ H+KAL + + + + SLQN LDL L +PS+ RE++++
Sbjct: 115 KRAEKVTELTGTSRVHLKALESLINVSLTSEPSLQNGLDLALKTLKVVPSHASREIVVIM 174
Query: 198 SALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKEL 257
+L+TCDP DI TI + K+ IRCSVI LSAE+ + ++L Q T G++ LD++HF++
Sbjct: 175 GSLTTCDPVDINLTIDELKKEGIRCSVISLSAEIHVARYLTQQTLGTFGAVLDDAHFRDQ 234
Query: 258 IMEHAPPPPAIAEFAIANLIKMGFPQRAGE-----GSISICSCHKE------VKVGVGYT 306
+M PPPA A+ +LI+MGFP E +S+C CH E V G+
Sbjct: 235 LMSQVDPPPA-AKTQHNSLIRMGFPHTKNEVEGKDAPLSMCMCHIENLEEPSVLCTTGHH 293
Query: 307 CPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVT----PLCLNDPRNRS 362
CP+C ++ CELP +C+ CGL LVS+PHLARSYHHL P+ F+EVT P +D N
Sbjct: 294 CPQCNSKYCELPVECQSCGLTLVSAPHLARSYHHLIPVPNFEEVTLDSMPTVSSD-YNGG 352
Query: 363 RSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESL 414
C+ C + L +K C C++ FC++CD +IHE+LH C GC ++
Sbjct: 353 VKECYACAKVLTFVADKS--IFKCGFCQQFFCIDCDAFIHETLHACVGCNTI 402
>gi|393217828|gb|EJD03317.1| TFIIH basal transcription factor complex, subunit SSL1 [Fomitiporia
mediterranea MF3/22]
Length = 481
Score = 300 bits (769), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 163/436 (37%), Positives = 245/436 (56%), Gaps = 65/436 (14%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYL 89
AWE +Y RSW+ ++EDESG L+ N + RR L +TA I++ +IR+L
Sbjct: 55 AWEATYT--RSWDTVREDESGSLQGAVNELLARGRRRR-----LLFPSTA-IRRTIIRHL 106
Query: 90 YIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
+VIDLS + + D RP+R + AF+ E+FDQNPL QIG++ ++ G+A + ++
Sbjct: 107 ILVIDLSASMLDRDMRPTRFDLALSTARAFIVEWFDQNPLGQIGVIGMRSGIAERIGEMS 166
Query: 150 GSPESHIKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 207
+P +K++ + L +G+ SLQNA+++ + +S +P++ RE++IL+ +L+T DPG+
Sbjct: 167 SNPHDVLKSIQDRHRLEPAGEPSLQNAVEMARSTMSHLPTHSSREIVILFGSLTTVDPGN 226
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 267
I ET+ C +IR +++ L+AEM IC+ +C TGG + V+L+E HF++L+ E PPP
Sbjct: 227 IHETLDACIRDRIRINLVALAAEMKICRDMCGKTGGQFGVSLNEGHFRDLLFELIPPPAQ 286
Query: 268 IA----------------EFAIANLIKMGFPQRAGEGS-ISICSCHKEVKVGVGYTCPRC 310
A A+L+ MGFP R E S ++C CH E+K G+ CPRC
Sbjct: 287 RALSRAAGAGASASAGSGGNPAADLMMMGFPTRLPEASPPALCVCHSELK-SAGFVCPRC 345
Query: 311 KARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC- 369
A+VC++PTDC +CGL +VSSPHLARSYHHLFP+ P+ VT LN + C GC
Sbjct: 346 AAKVCDVPTDCDVCGLMIVSSPHLARSYHHLFPVKPYQAVTDTELNS--TTASRACHGCA 403
Query: 370 ----------------------------------QQSLLSSGNKPGLYVACPKCKKHFCL 395
++ S G P CP CK FC
Sbjct: 404 SPFPPVSSGTSTSTNPVTGSAAGTGAAEGASAAGTSTVTSDGMSPLGRYRCPDCKNDFCT 463
Query: 396 ECDIYIHESLHNCPGC 411
ECD+++H+ +H CPGC
Sbjct: 464 ECDVFVHDVVHCCPGC 479
>gi|195348862|ref|XP_002040966.1| GM22477 [Drosophila sechellia]
gi|194122476|gb|EDW44519.1| GM22477 [Drosophila sechellia]
Length = 438
Score = 300 bits (769), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 162/422 (38%), Positives = 252/422 (59%), Gaps = 37/422 (8%)
Query: 13 AEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDR 72
A++E+ED+ + WE Y +++WEA+++DE G L D + Q +R R
Sbjct: 2 ADDEQEDQKEY------RWETGY--EKTWEAIKDDEDGML---DGAIAEIIQKAKRQRQ- 49
Query: 73 SLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQI 132
T + + G++R++++V+D S + + D +P+R+ K +E F+ EFFDQNP+SQ+
Sbjct: 50 --AQKTKQNRLGMMRHMFVVLDCSESMSVPDLKPTRLRCTVKLLELFIEEFFDQNPISQL 107
Query: 133 GLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGH 190
GL+ +K A +T+L G+ H+KAL + + + + SLQN LDL L +PS+
Sbjct: 108 GLIALKAKRAEKVTELTGTSRVHLKALESLANVSLTSEPSLQNGLDLALKSLKVVPSHAS 167
Query: 191 REVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALD 250
RE++I+ +L+TCDP DI TI + K+ IRCSVI LSAE+ + ++L Q T G++ LD
Sbjct: 168 REIVIIMGSLTTCDPVDINLTIDELKKEGIRCSVISLSAEIHVARYLTQQTMGTFGAVLD 227
Query: 251 ESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGE-----GSISICSCHKE------V 299
++HF++ +M PPPA A+ +LI+MGFP E +S+C CH E
Sbjct: 228 DAHFRDQLMSQVDPPPA-AKTQHNSLIRMGFPHTKNEVEGKDAPLSMCMCHIENLEEPSE 286
Query: 300 KVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPR 359
G+ CP+C ++ CELP +C+ CGL LVS+PHLARSYHHLFP+ F+E+ + P
Sbjct: 287 LTTTGHHCPQCNSKYCELPVECQSCGLTLVSAPHLARSYHHLFPVPNFEELPFEAM--PA 344
Query: 360 NRSRST-----CFGCQQSLLSSGNKPGLYVA--CPKCKKHFCLECDIYIHESLHNCPGCE 412
+ S T C+GC ++L +K V C CK+ FC++CDI+IH++LH C GC
Sbjct: 345 SSSEFTSDVRECYGCAKALGQGVDKVADKVVFRCGFCKQFFCVDCDIFIHDTLHACVGCN 404
Query: 413 SL 414
++
Sbjct: 405 TI 406
>gi|400594628|gb|EJP62466.1| TFIIH basal transcription factor complex p47 subunit , putative
[Beauveria bassiana ARSEF 2860]
Length = 503
Score = 300 bits (769), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 177/424 (41%), Positives = 244/424 (57%), Gaps = 59/424 (13%)
Query: 29 EAWERSYADDRSWEA--LQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLI 86
+AWE+S R+WE +E E G L + A+ RRRLR T +Q+G+I
Sbjct: 70 QAWEKS---KRTWETDLPEEGEDGTL----DLTTLEAEKRRRLR-----RDTTPLQRGII 117
Query: 87 RYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLT 146
R+L +V+D+S A A+ D P+R + + AFVREFF+QNP+SQ+G+V ++DGVA ++
Sbjct: 118 RHLMLVLDMSFAMADKDMLPTRHRLTLRYAAAFVREFFEQNPISQLGIVGMRDGVAVRIS 177
Query: 147 DLGGSPESH---IKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTC 203
DLGG+P H +KAL G+ G+ SLQNAL++ +G L PS+G REVLI+Y AL +
Sbjct: 178 DLGGNPAEHLERLKALEGQ-DPQGNPSLQNALEMCRGALFHAPSHGTREVLIIYGALLSS 236
Query: 204 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS----YSVALDESHFKELIM 259
DPGDI +T+ +IR S++GLSA + IC LC T Y+VA+DE HF+EL +
Sbjct: 237 DPGDIHDTMTNLISDRIRVSIVGLSAHLSICAELCSRTNAGDTSQYNVAMDEVHFRELFL 296
Query: 260 EHAPPP-PAIAEFAIANLIKMGFPQR--AGEGSISICSCHKEVKVGVGYTCPRCKARVCE 316
PP E + A+L+ MGFP R A G++S C+CH + G+ C RC +RVC
Sbjct: 297 AATTPPITRTQEQSTASLLMMGFPSRVLAPGGAVSYCACHNK-PCREGFLCTRCGSRVCR 355
Query: 317 LPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRS-TCFGCQ----- 370
LP +C CGL L+ S HLARSYHHLFP+ + EV P N ++S CF CQ
Sbjct: 356 LPAECPACGLTLILSTHLARSYHHLFPLRNWVEV-PWA-----NAAQSAACFACQCPFSA 409
Query: 371 ---------------------QSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCP 409
+ L + G AC C HFC++CD+Y HE +HNCP
Sbjct: 410 PPRTVEGGVNGEKHADTQETGRRLAAKGVSESGRYACEVCGNHFCIDCDVYAHEVIHNCP 469
Query: 410 GCES 413
GC+S
Sbjct: 470 GCQS 473
>gi|342888788|gb|EGU88007.1| hypothetical protein FOXB_01490 [Fusarium oxysporum Fo5176]
Length = 468
Score = 300 bits (769), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 178/429 (41%), Positives = 246/429 (57%), Gaps = 54/429 (12%)
Query: 30 AWERSYADDRSWEA-LQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRY 88
AWE S R+WE L E+E G L +A + +R LRD T +Q+G+IR+
Sbjct: 45 AWEVS---KRTWETNLPEEEDGIL---SLTALEAEKRKRLLRD------TTPLQRGIIRH 92
Query: 89 LYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL 148
+ +V+D+S A E D P+R ++ AFVREFF+QNP+SQ+G++ ++DGVA ++D+
Sbjct: 93 MVLVLDMSFAMTEKDLLPTRYRLMLSYAAAFVREFFEQNPISQLGIIGMRDGVAVRISDV 152
Query: 149 GGSPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPG 206
GG+P H++ L G G+ SLQNAL++ +G L PS+G REVLI+Y AL + DPG
Sbjct: 153 GGNPTEHLEKLKGLENEDPQGNPSLQNALEMCRGALFHAPSHGTREVLIIYGALLSSDPG 212
Query: 207 DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS----YSVALDESHFKELIMEHA 262
DI ETI +IR S++GLSA++ IC LC T Y++A+DE HF+EL +
Sbjct: 213 DIHETIGNLITDRIRVSIVGLSAQVAICADLCSRTNAGDESQYNIAMDEVHFRELFLAAT 272
Query: 263 PPPPA-IAEFAIANLIKMGFPQRA--GEGSISICSCHKEVKVGVGYTCPRCKARVCELPT 319
PP AE + A+L+ MGFP R G+ S C+CH GY C RC ARVC +P
Sbjct: 273 TPPVTRTAEQSTASLLMMGFPSRTLVPNGTTSYCACHNR-PFREGYLCTRCGARVCRIPA 331
Query: 320 DCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNR-SRS-TCFGC-------- 369
+C C L L+ S HLARSYHHLFP+ + EV P + SRS CF C
Sbjct: 332 ECPACDLTLILSTHLARSYHHLFPLRNWVEV-------PWTKASRSAACFSCLAPFPEPP 384
Query: 370 -----QQSLLSSG--------NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLRH 416
+S SG ++ G Y AC C +HFC++CD++ HE +HNCPGC+SL
Sbjct: 385 KGKAPDKSREDSGAPKTAKGVSESGRY-ACEVCGQHFCIDCDVFAHEVVHNCPGCQSLLS 443
Query: 417 SNPIVANEG 425
A+ G
Sbjct: 444 KTDAAASSG 452
>gi|444318053|ref|XP_004179684.1| hypothetical protein TBLA_0C03620 [Tetrapisispora blattae CBS 6284]
gi|387512725|emb|CCH60165.1| hypothetical protein TBLA_0C03620 [Tetrapisispora blattae CBS 6284]
Length = 447
Score = 300 bits (768), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 174/426 (40%), Positives = 241/426 (56%), Gaps = 38/426 (8%)
Query: 3 NSERKRLNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYH 62
N +K +N A E +GG AWE RSW+ ++ DE D+ +
Sbjct: 40 NKRKKTINNNALVGE-------SGGY-AWEDEIK--RSWDLVKVDED------DDMSTLV 83
Query: 63 AQYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVRE 122
A + + R+ Q+G+IR L +V+D S E D RP+R ++ + FV E
Sbjct: 84 ASIIEQRKKRATKKIITPYQRGIIRTLVLVLDCSEIMLEKDLRPNRYSMSLQYAIDFVHE 143
Query: 123 FFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQG 180
FFDQNP+SQ+G++ +++G+A+ ++ + G+P+ HI +L M K G+ SLQNAL++ +G
Sbjct: 144 FFDQNPISQMGVIIMRNGLAHLVSQISGNPQDHIDSLKAMRKQEPKGNPSLQNALEMARG 203
Query: 181 LLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQD 240
LL +P + REVLI++ LS+ DPGDI +TI + KIR +VIGLSA++ IC+ LC
Sbjct: 204 LLLPVPPHCTREVLIVFGGLSSTDPGDIHQTITSLVQEKIRATVIGLSAQVAICQELCTS 263
Query: 241 TG----GSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCH 296
T SY V LDE HFKEL + P P L+KMGFP R E + + C+CH
Sbjct: 264 TNYGDSDSYRVILDEVHFKELFSQAVTPLPVNKINKGFTLVKMGFPTRVFEDTPTFCTCH 323
Query: 297 KEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLN 356
++ G GY CP CK++VC LP C C L L+ S HLARSYHHL P+ F EV +
Sbjct: 324 HKLIYG-GYFCPNCKSKVCSLPIVCPCCDLMLILSTHLARSYHHLMPLNTFTEVE--VVK 380
Query: 357 D---PRNRSRSTCFGCQQSLLS-SGNKPGLYVA-----CPKCKKHFCLECDIYIHESLHN 407
D P N CF CQ+ NK G + C +C K FC++CD+YIHE LHN
Sbjct: 381 DAAFPTN----NCFSCQKGFPHLVNNKTGELLTSSRYRCGECHKDFCIDCDVYIHEILHN 436
Query: 408 CPGCES 413
CPGCES
Sbjct: 437 CPGCES 442
>gi|194876451|ref|XP_001973778.1| GG16285 [Drosophila erecta]
gi|190655561|gb|EDV52804.1| GG16285 [Drosophila erecta]
Length = 438
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 161/421 (38%), Positives = 250/421 (59%), Gaps = 35/421 (8%)
Query: 13 AEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDR 72
A++E+ED+ + WE Y +++WEA+++DE G L D + Q +R R
Sbjct: 2 ADDEQEDQKEY------RWETGY--EKTWEAIKDDEDGML---DGAIAEIIQKAKRQRQ- 49
Query: 73 SLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQI 132
T + + G++R++++V+D S + + D +P+R+ K +E F+ EFFDQNP+SQ+
Sbjct: 50 --AQKTKQNRLGMMRHMFLVLDCSESMSVPDLKPTRLRCTVKLLELFIEEFFDQNPISQL 107
Query: 133 GLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGH 190
G++ +K A +T+L G+ H+KAL + + + + SLQN LDL L +PS+
Sbjct: 108 GIIALKAKRAEKVTELTGTSRVHLKALESLANVSLTSEPSLQNGLDLALKSLKVVPSHAS 167
Query: 191 REVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALD 250
RE++I+ +L+TCDP DI TI + K IRCSVI LSAE+ + ++L Q T G++ LD
Sbjct: 168 REIVIIMGSLTTCDPVDINITIDELKREGIRCSVISLSAEIHVARYLTQQTMGTFGAVLD 227
Query: 251 ESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGE-----GSISICSCHKE------V 299
++HF++ +M PPPA A+ +LI+MGFP E +S+C CH E
Sbjct: 228 DAHFRDQLMSQVDPPPA-AKTQHNSLIRMGFPHTKNEVEGKDAPLSMCMCHIENLEEPSE 286
Query: 300 KVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEV----TPLCL 355
G+ CP+C ++ CELP +C+ CGL LVS+PHLARSYHHLFP+ F+E+ P
Sbjct: 287 LTTTGHHCPQCNSKYCELPVECQSCGLTLVSAPHLARSYHHLFPVPNFEELPFEAMPASS 346
Query: 356 NDPRNRSRSTCFGCQQSLLSSGNKPGLYVA--CPKCKKHFCLECDIYIHESLHNCPGCES 413
+D N R C+ C ++L +K V C CK+ FC++CDI+IH++LH C GC +
Sbjct: 347 SDLNNGVRE-CYACAKALGQGVDKAADKVVFRCGFCKQFFCVDCDIFIHDTLHACVGCNT 405
Query: 414 L 414
+
Sbjct: 406 I 406
>gi|21356299|ref|NP_649427.1| Ssl1, isoform A [Drosophila melanogaster]
gi|442634242|ref|NP_001262227.1| Ssl1, isoform B [Drosophila melanogaster]
gi|10726963|gb|AAF51879.2| Ssl1, isoform A [Drosophila melanogaster]
gi|15010516|gb|AAK77306.1| GH08526p [Drosophila melanogaster]
gi|220945098|gb|ACL85092.1| Ssl1-PA [synthetic construct]
gi|220952514|gb|ACL88800.1| Ssl1-PA [synthetic construct]
gi|440216208|gb|AGB94920.1| Ssl1, isoform B [Drosophila melanogaster]
Length = 438
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 161/421 (38%), Positives = 252/421 (59%), Gaps = 35/421 (8%)
Query: 13 AEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDR 72
A++E+ED+ + WE Y +++WEA+++DE G L D + Q +R R
Sbjct: 2 ADDEQEDQKEY------RWETGY--EKTWEAIKDDEDGML---DGAIAEIIQKAKRQRQ- 49
Query: 73 SLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQI 132
+ + + G++R++++V+D S + + D +P+R+ K +E F+ EFFDQNP+SQ+
Sbjct: 50 --AQKSKQNRLGMMRHMFVVLDCSESMSVPDLKPTRLRCTVKLLELFIEEFFDQNPISQL 107
Query: 133 GLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGH 190
GL+ +K A +T+L G+ H+KAL + + + + SLQN LDL L +PS+
Sbjct: 108 GLIALKAKRAEKVTELTGTSRVHLKALESLANVSLTSEPSLQNGLDLALKSLKVVPSHAS 167
Query: 191 REVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALD 250
RE++I+ +L+TCDP DI TI + K+ IRCSVI LSAE+ + ++L Q T G++ LD
Sbjct: 168 REIVIIMGSLTTCDPVDINLTIDELKKEGIRCSVISLSAEIHVARYLTQQTMGTFGAVLD 227
Query: 251 ESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGE-----GSISICSCHKE------V 299
++HF++ +M PPPA A+ +LI+MGFP E +S+C CH E
Sbjct: 228 DAHFRDQLMSQVDPPPA-AKTQHNSLIRMGFPHTKNEVEGKDAPLSMCMCHIENLEEPSE 286
Query: 300 KVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEV----TPLCL 355
G+ CP+C ++ CELP +C+ CGL LVS+PHLARSYHHLFP+ F+E+ P
Sbjct: 287 LTTTGHHCPQCNSKYCELPVECQSCGLTLVSAPHLARSYHHLFPVPNFEELPFEAMPASS 346
Query: 356 NDPRNRSRSTCFGCQQSLLSSGNKPGLYVA--CPKCKKHFCLECDIYIHESLHNCPGCES 413
+D + R C+GC ++L +K V C CK+ FC++CDI+IH++LH C GC +
Sbjct: 347 SDLTSDVRE-CYGCAKALGQGVDKVADKVVFRCGFCKQFFCVDCDIFIHDTLHACVGCNT 405
Query: 414 L 414
+
Sbjct: 406 I 406
>gi|195496832|ref|XP_002095860.1| GE22646 [Drosophila yakuba]
gi|194181961|gb|EDW95572.1| GE22646 [Drosophila yakuba]
Length = 438
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 159/414 (38%), Positives = 249/414 (60%), Gaps = 29/414 (7%)
Query: 20 EDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTA 79
+DD+ + WE Y +++WEA+++DE G L D + Q +R R T
Sbjct: 3 DDDHEDQKEYRWETGY--EKTWEAIKDDEDGML---DGAIAEIIQKAKRQRQ---AQKTK 54
Query: 80 RIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKD 139
+ + G++R++++V+D S + + D +P+R+ K +E F+ EFFDQNP+SQ+G++ +K
Sbjct: 55 QNRLGMMRHMFLVLDCSESMSVPDLKPTRLRCTVKLLELFIEEFFDQNPISQLGIIALKA 114
Query: 140 GVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILY 197
A +T+L G+ H+KAL + + + + SLQN LDL L +PS+ RE++I+
Sbjct: 115 KRAEKVTELTGTSRVHLKALESLANVSLTSEPSLQNGLDLALKSLKVVPSHASREIVIIM 174
Query: 198 SALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKEL 257
+L+TCDP DI TI + K+ IRCSVI LSAE+ + ++L Q T G++ LD++HF++
Sbjct: 175 GSLTTCDPVDINITIDELKKEGIRCSVISLSAEIHVARYLTQQTMGTFGAVLDDAHFRDQ 234
Query: 258 IMEHAPPPPAIAEFAIANLIKMGFPQRAGE-----GSISICSCHKE------VKVGVGYT 306
+M PPPA A+ +LI+MGFP E +S+C CH E G+
Sbjct: 235 LMSQVDPPPA-AKTQHNSLIRMGFPHTKNEVEGKDAPLSMCMCHIENLEEPSELTTTGHH 293
Query: 307 CPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEV----TPLCLNDPRNRS 362
CP+C ++ CELP +C+ CGL LVS+PHLARSYHHLFP+ F+E+ P +D +
Sbjct: 294 CPQCNSKYCELPVECQSCGLTLVSAPHLARSYHHLFPVPNFEELPFEAMPASSSDLTSGV 353
Query: 363 RSTCFGCQQSLLSSGNKPGLYVA--CPKCKKHFCLECDIYIHESLHNCPGCESL 414
R C+ C ++L S +K V C CK++FC++CDI+IH++LH C GC ++
Sbjct: 354 RE-CYACAKALGQSVDKVADKVVYRCGFCKQYFCVDCDIFIHDTLHACVGCNTI 406
>gi|146324050|ref|XP_001481497.1| RNA polymerase TFIIH complex subunit Ssl1 [Aspergillus fumigatus
Af293]
gi|129556348|gb|EBA27248.1| RNA polymerase TFIIH complex subunit Ssl1, putative [Aspergillus
fumigatus Af293]
gi|159126166|gb|EDP51282.1| transcription factor and DNA repair complex, core TFIIH, putative
[Aspergillus fumigatus A1163]
Length = 456
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 166/411 (40%), Positives = 240/411 (58%), Gaps = 42/411 (10%)
Query: 26 GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGL 85
GG E WE S R+WE L E G + + +R LRD T +Q+G+
Sbjct: 41 GGAE-WEVS----RTWETLVEGADGTISSTVEGLLEAGKRKRLLRD------TTPLQRGI 89
Query: 86 IRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 145
IR+L +++DLS++ AE D RP+R + + + FVREFF+QNP+SQ+G++ ++DG+A +
Sbjct: 90 IRHLILILDLSQSMAEKDLRPTRYLLSLRYAQEFVREFFEQNPISQLGVLGLRDGLAIRV 149
Query: 146 TDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTC 203
+D+ G+P HI A+ + G SLQN L++ +G L PS+G REV +++ ++ +
Sbjct: 150 SDMSGNPTEHISAIQALRDHDPKGLPSLQNGLEMARGALFHTPSHGTREVFVIFGSILSS 209
Query: 204 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGG----SYSVALDESHFKELIM 259
DPGDI +TI KI + GL+A++ IC+ LC T +Y VAL+E HF+EL+M
Sbjct: 210 DPGDIHQTITTLINDKISVRIAGLAAQVAICRELCSRTNAGDDTTYGVALNEQHFRELMM 269
Query: 260 EHAPPPPAIAE-FAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELP 318
+ PP ++ A ++L+ MGFP R E S+C+CH E G GY C RC ++VC LP
Sbjct: 270 DVTTPPVTYSQKKATSSLLMMGFPSRTVETCPSLCACHSEPSCG-GYLCSRCNSKVCGLP 328
Query: 319 TDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNR-SRS-TCFGC------- 369
+C CGL L+ S HLARSYHHLFP+ + EV P R SRS TCF C
Sbjct: 329 AECPSCGLTLILSTHLARSYHHLFPLMNWIEV-------PWQRASRSLTCFACGIYFPTV 381
Query: 370 ---QQSLLSSGNKPGLYVA----CPKCKKHFCLECDIYIHESLHNCPGCES 413
Q + G+ V+ C CK HFC++CD++ HE +HNCPGC+S
Sbjct: 382 PPKDQWQATESQAKGMSVSSRYECTVCKNHFCIDCDLFAHEIVHNCPGCQS 432
>gi|196007624|ref|XP_002113678.1| hypothetical protein TRIADDRAFT_57351 [Trichoplax adhaerens]
gi|190584082|gb|EDV24152.1| hypothetical protein TRIADDRAFT_57351 [Trichoplax adhaerens]
Length = 353
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 150/351 (42%), Positives = 218/351 (62%), Gaps = 30/351 (8%)
Query: 19 DEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATT 78
D+ D++ G WE S+ +R+WE L EDE G L+ + +R R R +
Sbjct: 3 DDADDVESGYR-WESSF--ERTWEVLVEDEQGSLKSTVDEL-------QRARKRRVADRK 52
Query: 79 ARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVK 138
A ++ GL+R++YI++D+S A + +D +P+R+ K ++ F+ E+FDQNP+SQ+G++ +
Sbjct: 53 ANVRLGLMRHMYIIVDMSSAISIIDLKPNRLVATVKLLDDFITEYFDQNPISQLGVIITR 112
Query: 139 DGVANCLTDLGGSPESHIKALMGKL--GCSGDSSLQNALDLVQGLLSQIPSYGHREVLIL 196
+ A LTD+GG+P HI AL C G+ SLQNAL+L L +PS+ RE+L++
Sbjct: 113 NKRAEKLTDIGGNPRRHIAALRQAACKPCIGEPSLQNALELASQTLRHVPSHASREILVI 172
Query: 197 YSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKE 256
Y++L++CDP DI T++ E IRCS IGLSAEM+I K L +TGGSY V LDE H+KE
Sbjct: 173 YASLTSCDPSDIHATVKNLVEDNIRCSAIGLSAEMYILKKLASETGGSYRVILDEHHYKE 232
Query: 257 LIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKV-----GVGYTCPRCK 311
L+ + PP A + ++LI+MGFP+ S+C CH + +V GY CP+CK
Sbjct: 233 LLTHYVIPPVATGKLG-SSLIRMGFPEYRTNSHPSMCQCHLDSRVVKSFSTTGYFCPQCK 291
Query: 312 ARVCELPTDCRICG------------LQLVSSPHLARSYHHLFPIAPFDEV 350
A+ CELP +C+ICG L LVS+PHLARSY HLFP+ F+EV
Sbjct: 292 AKYCELPIECQICGKMNITTKTRNMRLSLVSAPHLARSYQHLFPLEDFEEV 342
>gi|289743109|gb|ADD20302.1| RNA polymerase II transcription initiation [Glossina morsitans
morsitans]
Length = 419
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 164/408 (40%), Positives = 244/408 (59%), Gaps = 33/408 (8%)
Query: 22 DNLNGGLEA---WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATT 78
DNL+G WE Y +++WE ++ED+ G L D++ Q +R R T
Sbjct: 2 DNLDGEEPKEYRWETGY--EKTWEGIKEDDDGIL---DDAIAEIIQKAKRKRQ---AQKT 53
Query: 79 ARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVK 138
+ + G++R+L+I++D S + + D +P+R+ + +E F+ EFFDQNP+SQ+GL+ +K
Sbjct: 54 KQNKLGMMRHLFIILDCSESMSVPDLKPTRLLCTLRLLEIFIEEFFDQNPVSQMGLIVLK 113
Query: 139 DGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLIL 196
A +T L G+ + H+ AL + K+ SG+ SLQN LDL L +PS+ RE+L++
Sbjct: 114 SKRAEKITALTGTAKLHLNALESLSKISLSGEPSLQNGLDLALKSLKVVPSHASREILVI 173
Query: 197 YSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKE 256
++L+TCDP DI TI K IRCSVI LSAE+++C+HL Q T G Y LD++HF++
Sbjct: 174 MASLTTCDPVDINVTIDILKNEGIRCSVISLSAEIYVCRHLTQQTVGLYGAVLDDAHFRD 233
Query: 257 LIMEHAPPPPAIAEFAIANLIKMGFPQ-RAGEGS---ISICSCHKEVK------VGVGYT 306
++ + PP A ++ +LIKMGFP RA E +S+C CH E GY
Sbjct: 234 QLLAYIDPPAA-SQTQENSLIKMGFPHARADESKDPPLSMCMCHIENPEEPSKLTSGGYH 292
Query: 307 CPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTC 366
CP+C ++ CELP +C+ CGL LVS+PHLARSYHHLFP+ F E+ N + C
Sbjct: 293 CPQCFSKYCELPVECQTCGLTLVSAPHLARSYHHLFPVQHFAELA-------YNGQAAVC 345
Query: 367 FGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESL 414
+ CQ+ L S NK C C + +C +CDI+IH++LH C GC ++
Sbjct: 346 YACQRPLSESTNK--FVYRCEICTQIYCCDCDIFIHDTLHTCVGCNTI 391
>gi|51013237|gb|AAT92912.1| YLR005W [Saccharomyces cerevisiae]
Length = 461
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 167/401 (41%), Positives = 233/401 (58%), Gaps = 27/401 (6%)
Query: 25 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKG 84
NGG AWE RSW+ ++ D+ G D ++ + R + R+ Q+G
Sbjct: 71 NGGY-AWEDEIK--RSWDLVKVDDEG-----DMASLVASIVEAR-KKRTAKKNITPYQRG 121
Query: 85 LIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 144
+IR L + + S A E D RP+R A++ + FV EFFDQNP+SQ+G++ +++G+A
Sbjct: 122 IIRSLILTLGCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQL 181
Query: 145 LTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALST 202
++ + G+P+ HI AL + K G+ SLQNAL++ +GLL +P++ REVLI++ +LST
Sbjct: 182 VSQVSGNPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVFGSLST 241
Query: 203 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELI 258
DPGDI +TI KIR V+GLSA++ ICK LC+ T Y + LDE+H KEL
Sbjct: 242 TDPGDIHQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHLKELF 301
Query: 259 MEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELP 318
E P P L+KMGFP R E + + CSCH ++ G GY CP C ++VC LP
Sbjct: 302 NEAVTPLPVNKINKGFTLVKMGFPTRIFEDTPTFCSCHSKLVYG-GYFCPNCHSKVCSLP 360
Query: 319 TDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL-LSSG 377
T C C L L+ S HLARSYHHL P+ F EV + RS CF CQ +
Sbjct: 361 TVCPCCDLMLILSTHLARSYHHLMPLKTFAEVP----TTEKFRSED-CFSCQSRFPILKN 415
Query: 378 NKPGLYVA-----CPKCKKHFCLECDIYIHESLHNCPGCES 413
+K G + C CK+ FC++CD++IHE LHNCPGCES
Sbjct: 416 HKNGKLLTSSRYRCEDCKQEFCVDCDVFIHEILHNCPGCES 456
>gi|346464883|gb|AEO32286.1| hypothetical protein [Amblyomma maculatum]
Length = 448
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 157/365 (43%), Positives = 232/365 (63%), Gaps = 26/365 (7%)
Query: 19 DEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATT 78
DE+D G WE Y +R+WEA+QEDESG L+P + A+ ++ L ++
Sbjct: 3 DEED---GKGYRWETEY--ERTWEAIQEDESGLLQPSVLDFVHRAKRKQMLAKKN----- 52
Query: 79 ARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVK 138
++ G++R+LYIV+D S A AE D +P+R+ K +E FV EFFDQNP+S +G+++
Sbjct: 53 --VRLGMMRHLYIVVDFSEAMAEPDLKPTRLICTLKMLELFVEEFFDQNPISNVGVISTC 110
Query: 139 DGVANCLTDLGGSPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLIL 196
+ A L +L G+ ++AL SG+ SLQN+L+L +L +P + REVLI+
Sbjct: 111 NKRAQKLCELAGNTGKVVEALKSCKTQVPSGEPSLQNSLELAAEVLRHLPVHTSREVLII 170
Query: 197 YSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKE 256
+L+TCDPG+I TI+ ++ IRCS++GL+AE+++C L + TGG+Y+V LDE+HFK+
Sbjct: 171 MGSLTTCDPGNIQTTIETMRKCNIRCSIVGLAAEVYVCCRLTKTTGGTYNVILDENHFKD 230
Query: 257 LIMEHAPPPPAIAEFAIANLIKMGFP--QRAGEGSISICSCHKEVK------VGVGYTCP 308
++ +HA PPP A ++LI+MGFP + EG S+C CH + + GY CP
Sbjct: 231 ILFQHAIPPPVTGN-AESSLIRMGFPYHRTETEGKPSLCFCHLDSQNPSDGLSKGGYFCP 289
Query: 309 RCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFG 368
+C + C LP +C++CGL LVS+PHLARSYHHLF + PFDEV P L P + + TCF
Sbjct: 290 QCNGKYCTLPVECKVCGLTLVSAPHLARSYHHLFALEPFDEVPPDTL--PAD-TPVTCFA 346
Query: 369 CQQSL 373
CQ S+
Sbjct: 347 CQVSI 351
>gi|388580345|gb|EIM20660.1| TFIIH basal transcription factor complex, subunit SSL1 [Wallemia
sebi CBS 633.66]
Length = 444
Score = 298 bits (762), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 157/415 (37%), Positives = 246/415 (59%), Gaps = 46/415 (11%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYL 89
+WE Y RSW+ + EDESG L N AF RRR IQ+ +IR+
Sbjct: 44 SWESEYK--RSWDVVAEDESGSLTTSVN-AFIERNKRRRRHG------GIPIQRAIIRHN 94
Query: 90 YIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
+V+DLS A ++ D RP+R + + +V+E+FDQNP+ Q+G + ++ GVA + +
Sbjct: 95 LLVLDLSLAMSDRDMRPNRFLLSLEYAREYVKEYFDQNPIGQMGAIGMRSGVAEWICKMS 154
Query: 150 GSPESHIKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 207
GS +K+L K L +G+ SLQNAL++ + ++ +P++ RE+++++ +L+TCDPG+
Sbjct: 155 GSQHDLVKSLQNKNKLEPNGEPSLQNALEMARASMAHLPTHASREIVVVFGSLTTCDPGN 214
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 267
I +T++ KIR ++I L+AE+ I + + + TGG+ SVALDE H+K+++ E PPP
Sbjct: 215 IHDTLRALIRDKIRVNIISLAAEVRILREVAEKTGGTLSVALDEGHYKDVLFETVPPPAV 274
Query: 268 IAEFAI------------ANLIKMGFPQRAG-EGSISICSCHKEVKVGVGYTCPRCKARV 314
A+ ++L++MGF R +++C+CH E++ GY CPRC +++
Sbjct: 275 HTAKALNTVEQGGGSVDESDLMQMGFAVRLPYTAPLTLCACHSELRRQ-GYICPRCGSKL 333
Query: 315 CELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQ--- 371
C++PTDC +C L +VSSPHLARSYHHLFP+ + V P + + S + CFGC+Q
Sbjct: 334 CDIPTDCAVCDLVVVSSPHLARSYHHLFPVPDWAVVNPQAITE---TSDTRCFGCRQVFP 390
Query: 372 --------------SLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCE 412
++ ++ + G Y CPKC FC ECDIY HE+LH CPGC+
Sbjct: 391 PVAQSMTLPTPTAATVSANISATGRY-RCPKCMHDFCSECDIYCHETLHVCPGCQ 444
>gi|45188211|ref|NP_984434.1| ADR338Cp [Ashbya gossypii ATCC 10895]
gi|44983055|gb|AAS52258.1| ADR338Cp [Ashbya gossypii ATCC 10895]
gi|374107649|gb|AEY96557.1| FADR338Cp [Ashbya gossypii FDAG1]
Length = 469
Score = 297 bits (761), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 171/407 (42%), Positives = 229/407 (56%), Gaps = 37/407 (9%)
Query: 24 LNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQK 83
+NGG AWE RSW+ ++ D G N A A + RS Q+
Sbjct: 79 VNGGY-AWEDEI--QRSWDLVKVDNEG------NMAALVASIIEARKKRSANKDITPYQR 129
Query: 84 GLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVAN 143
G+IR + +VID S A E D RP+R A+ + FV FFDQNP+SQ+ +V +++G+A
Sbjct: 130 GIIRTMILVIDCSEAMLERDLRPNRHAMTVQYAIDFVHNFFDQNPISQLCIVAMRNGMAQ 189
Query: 144 CLTDLGGSPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALS 201
++ + G+P+ HI+AL K G+ SLQNAL++ +GLL +PS+ REVLI++ ALS
Sbjct: 190 LVSQVSGNPQEHIEALKAVRKQEPKGNPSLQNALEMARGLLLHVPSHCTREVLIVFGALS 249
Query: 202 TCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDT----GGSYSVALDESHFKEL 257
+ DPGDI +TI IR VIGLSA++ ICK LC+ T Y V L+E+HFK+L
Sbjct: 250 STDPGDIHQTIASLANEHIRTRVIGLSAQVAICKELCKQTNYGDNSYYGVILNETHFKDL 309
Query: 258 IMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCEL 317
E P P L+KMGFP R E + S C+CH + G GY CP CK++VC L
Sbjct: 310 FAEAVVPLPVNKMNKGFTLVKMGFPTRIFEDTPSFCTCHSRLVHG-GYFCPNCKSKVCSL 368
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQ------- 370
P C C L L+ S HLARSYHHL P+ F E+ P+ + P CF CQ
Sbjct: 369 PIVCPCCDLMLILSTHLARSYHHLMPLKVFQEL-PVDIQFP----TENCFSCQKKFPRLR 423
Query: 371 ----QSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 413
Q LL+S C CK FC++CD+++HE LHNCPGCES
Sbjct: 424 NYKTQDLLTSSR-----YRCENCKCDFCIDCDVFVHEILHNCPGCES 465
>gi|195127781|ref|XP_002008346.1| GI13436 [Drosophila mojavensis]
gi|193919955|gb|EDW18822.1| GI13436 [Drosophila mojavensis]
Length = 461
Score = 297 bits (761), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 157/410 (38%), Positives = 244/410 (59%), Gaps = 26/410 (6%)
Query: 20 EDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTA 79
+DD + WE Y +++WEA++ED+ G L A+ R+R D+ T
Sbjct: 3 DDDQDDQKEYRWETGY--EKTWEAIKEDDDGLLDGAIADIIQKAK-RKRQADK-----TK 54
Query: 80 RIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKD 139
+ + G++R+++IV+D S + + D +P+R+ K +E F+ EFFDQNP+SQ+G++ +K
Sbjct: 55 QNRLGMMRHMFIVLDCSESMSVPDLKPTRLLCTLKLLEIFIEEFFDQNPISQLGIIALKA 114
Query: 140 GVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILY 197
A +T+L G+ H+KAL + + + + SLQN LDL L +PS+ RE++I+
Sbjct: 115 KRAEKITELTGTSRVHLKALASLANVPLTSEPSLQNGLDLALKTLKVVPSHASREIVIIM 174
Query: 198 SALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKEL 257
+L+TCDP DI TI + K +IRCSVI LSAE+ IC++L Q T G++ LD++H+++
Sbjct: 175 GSLTTCDPVDINVTIDELKRERIRCSVISLSAEIHICRYLTQQTMGTFGAVLDDAHYRDQ 234
Query: 258 IMEHAPPPPAIAEFAIANLIKMGFPQRAGE-----GSISICSCHKE------VKVGVGYT 306
++ PPPA A+ +LI+MGFP E +S+C CH E G+
Sbjct: 235 LLSQVDPPPA-AKTQDNSLIRMGFPHSKNEVEGKDAPLSMCMCHIENLDEPSELSTTGHH 293
Query: 307 CPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCL--NDPRNRSRS 364
CP+C ++ CELP +C+ CGL LVS+PHLARSYHHLFP+ F+E++ + P S
Sbjct: 294 CPQCNSKYCELPVECQCCGLTLVSAPHLARSYHHLFPVPNFEELSYDMVPPASPDCGSLR 353
Query: 365 TCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESL 414
C+ C + L +K C C + FC++CDI+IHE+LH C GC ++
Sbjct: 354 KCYACIKVLNPVTDKS--VFKCGYCNQFFCIDCDIFIHETLHACVGCNTI 401
>gi|347831479|emb|CCD47176.1| similar to transcription factor Zn, C2H2 [Botryotinia fuckeliana]
Length = 478
Score = 297 bits (760), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 164/414 (39%), Positives = 243/414 (58%), Gaps = 39/414 (9%)
Query: 25 NGGLEAWERSYAD-DRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQK 83
NGG + ++ D RSW+ + E G + + +R LRD T +Q+
Sbjct: 49 NGGGNRRKAAWEDIQRSWDTVVEGADGSINSTVEGLREANKRKRLLRD------TTPLQR 102
Query: 84 GLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVAN 143
G+IR+ +++DLS A E D RP+R + + FV E+F+QNP+SQ+G++ ++DG+A
Sbjct: 103 GIIRHFILILDLSFAMTEKDMRPTRYLLTIRYASEFVTEYFEQNPISQLGIIGMRDGIAV 162
Query: 144 CLTDLGGSPESHI---KALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSAL 200
++D+ G+P HI KAL G G+ SLQNAL++ + L PS+G RE+LI+Y AL
Sbjct: 163 RISDMSGNPTEHIERLKALRVDQG-QGNPSLQNALEMSRAALFHAPSHGTREILIIYGAL 221
Query: 201 STCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGG----SYSVALDESHFKE 256
+ DPGDI ETI +IR S++GL+A++ IC LC T +YSVAL+E HF++
Sbjct: 222 LSSDPGDIHETISSLITDRIRVSIVGLAAQVAICAELCSRTNAGDDTAYSVALNEEHFRQ 281
Query: 257 LIMEHAPPPPA-IAEFAIANLIKMGFPQRAGE--GSISICSCHKEVKVGVGYTCPRCKAR 313
L+M PP + + ++L+ MGFP R + S+S C+CH ++ G GY C RC+++
Sbjct: 282 LMMATTTPPVTRTKKQSQSSLLMMGFPSRTLDPGKSMSFCACHGKLSRG-GYLCSRCESK 340
Query: 314 VCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL 373
VC LP +C CGL L+ S HLARSYHHLFP+ + EV L +S+ C+GCQ +
Sbjct: 341 VCSLPAECPACGLTLILSTHLARSYHHLFPLRNWAEV----LWKDAGKSKG-CYGCQVTF 395
Query: 374 --------------LSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 413
L ++ G Y AC C HFC++CD++ HE +HNCPGC+S
Sbjct: 396 PQRDEHEKSASEQPLKGMSESGRY-ACEVCGNHFCIDCDVFAHEVVHNCPGCQS 448
>gi|452846260|gb|EME48193.1| hypothetical protein DOTSEDRAFT_69968 [Dothistroma septosporum
NZE10]
Length = 449
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 169/441 (38%), Positives = 245/441 (55%), Gaps = 51/441 (11%)
Query: 17 EEDEDDNLNGGLEAWERSYADDRS-WEA-------LQEDESGFLRPIDNSAFYHAQYRRR 68
E D+ D + G + R +++ WEA QE G + + A+ +R
Sbjct: 7 ELDDGDGPSMGTQMASRPKGREKARWEASANSKLAYQEAAGGSIEDVLGGREEAAKRKRL 66
Query: 69 LRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNP 128
+D T +Q+G+IR+L +++D S A E D RP+R + +AFVREF +QNP
Sbjct: 67 TKD------TTPLQRGIIRHLVLLLDFSEAMMEKDLRPTRYLLTLTYAKAFVREFIEQNP 120
Query: 129 LSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIP 186
+SQ+G+V +KDG+A ++D+ G+PE HIK L K +G+ SLQN LD+ + L P
Sbjct: 121 ISQLGIVGMKDGLAIRVSDMSGNPEDHIKILNEYAKKEPTGNPSLQNGLDMARAALYHTP 180
Query: 187 SYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS-- 244
S+G REVL++ AL T DPGDI +TI+ C + +IR S+IGL+A+M IC +C+ T
Sbjct: 181 SHGTREVLVVMGALLTSDPGDIHDTIKACIKDRIRVSIIGLAAQMHICAEICRKTNQGDE 240
Query: 245 --YSVALDESHFKELIMEHAPPPPAIAEFA------IANLIKMGFPQRAGEGSISICSCH 296
Y+VA+D+ F+EL+M+ PP + A ANL+ MGFP R E ++C+CH
Sbjct: 241 SCYNVAIDDVDFRELLMKSTTPPVMRSTDADALRLNQANLLMMGFPSRIVEDKATLCACH 300
Query: 297 KEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLN 356
++ G GY C RC A+VC LP C C L L+ S HLARSYHHLFP+ + EV+ +
Sbjct: 301 GQLTRG-GYLCSRCGAKVCSLPATCPTCDLTLILSTHLARSYHHLFPLQNWVEVS---WD 356
Query: 357 DPRNRSRSTCFGC-----------QQSLLSSGNKPGLYVA----------CPKCKKHFCL 395
R + C+GC + + L +KP A C C+ HFC+
Sbjct: 357 RARRKGSVQCYGCLAGFPRVPVEYETTQLEVRDKPRRRRAEGASESSRYECETCQNHFCI 416
Query: 396 ECDIYIHESLHNCPGCESLRH 416
+CD+ HE +HNCPGC S H
Sbjct: 417 DCDVAAHEMIHNCPGCMSNAH 437
>gi|259481102|tpe|CBF74326.1| TPA: component of the core form of RNA polymerase transcription
factor TFIIH (Eurofung) [Aspergillus nidulans FGSC A4]
Length = 455
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 154/401 (38%), Positives = 237/401 (59%), Gaps = 35/401 (8%)
Query: 39 RSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRA 98
R+WE L E G + ++ +R L+D T +Q+G+IR++ +++DLS++
Sbjct: 48 RTWETLVEGADGTISSTVGGLLEASKRKRLLKD------TTPLQRGIIRHIILILDLSQS 101
Query: 99 AAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKA 158
E D RP+R + + + FVREFF+QNP+SQ+G++ ++DG+A ++D+ G+P HI A
Sbjct: 102 MMEKDLRPTRYLLTLRYAQEFVREFFEQNPISQVGVIGLRDGLALRISDMSGNPTEHISA 161
Query: 159 L--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCK 216
+ + G SLQN L++ +G L PS+G RE+ I++ +L + DPGDI +TI
Sbjct: 162 IQDLRSQDPKGLPSLQNGLEMARGALFHTPSHGTREIFIVFGSLLSSDPGDIHQTITTLI 221
Query: 217 ESKIRCSVIGLSAEMFICKHLCQDTGGS----YSVALDESHFKELIMEHAPPPPAIAEF- 271
+ KIR ++GL+A++ IC+ LC T G Y VAL+E HF+EL++ PP ++
Sbjct: 222 DDKIRVGIVGLAAQVAICRELCSRTNGGDDTYYGVALNEQHFRELMLAVTTPPATYSQKQ 281
Query: 272 AIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSS 331
+ ++L+ MGFP R E S+C+CH G GY C RC ++VC LP +C CGL L+ S
Sbjct: 282 SASSLLMMGFPSRTIESFPSLCACHSNPTPG-GYLCSRCNSKVCGLPAECPSCGLTLILS 340
Query: 332 PHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC----------QQSLLSSGNKPG 381
HLARSYHHLFP+ + EV+ R +TCF C +Q + G
Sbjct: 341 THLARSYHHLFPLMNWVEVSW-----ERAHRSTTCFACGIAFPTIPPKEQWQATQNLAKG 395
Query: 382 LYVA----CPKCKKHFCLECDIYIHESLHNCPGCES--LRH 416
+ V+ C C+ HFC++CD++ HE +HNCPGC+S +RH
Sbjct: 396 MSVSSRYECTVCENHFCIDCDLFAHEVVHNCPGCQSRVVRH 436
>gi|50288221|ref|XP_446539.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525847|emb|CAG59466.1| unnamed protein product [Candida glabrata]
Length = 439
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 167/409 (40%), Positives = 237/409 (57%), Gaps = 32/409 (7%)
Query: 21 DDNLNG--GLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATT 78
++NL G G AWE RSW+ + ++ G + A A + R+ +
Sbjct: 42 NENLQGASGGYAWEDEIK--RSWDLVAVEDEG------DMATLVASIVEARKKRAAKSDV 93
Query: 79 ARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVK 138
Q+G+IR L + ID S A E D RP+R A++ +Q FV EFFDQNP+SQ+G+VT++
Sbjct: 94 TPYQRGIIRTLILTIDSSEAMLEKDLRPNRHAMIIQQAIDFVHEFFDQNPISQMGIVTMR 153
Query: 139 DGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLIL 196
+G+A ++ + G+P+ HI AL + K G+ SLQNAL++ +GLL +P++ REVLI+
Sbjct: 154 NGLAQLVSQVSGNPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIV 213
Query: 197 YSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDES 252
+ +LS+ DPGDI +TI + +IR V+GLSAE+ ICK LC+ T Y V LDE+
Sbjct: 214 FGSLSSNDPGDIHQTIASLVQEQIRVKVLGLSAEVAICKELCKQTNMGDTSFYQVLLDET 273
Query: 253 HFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKA 312
H K+L E P P L+KMGFP R E + C+CH ++ G GY CP C +
Sbjct: 274 HLKKLFDEAVTPLPVNKINRGFTLVKMGFPTRIFEEQPTFCACHAKLIYG-GYFCPNCNS 332
Query: 313 RVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRST--CFGCQ 370
+VC LPT C C L L+ S HLARS+HHL P+ F EV P S T C+ CQ
Sbjct: 333 KVCSLPTVCPCCDLMLILSTHLARSFHHLMPLKTFVEV-------PAAESFPTENCYSCQ 385
Query: 371 QS--LLSSGNKPGLYVA----CPKCKKHFCLECDIYIHESLHNCPGCES 413
++ S + + C +CK +C++CD++IHESLH CPGCES
Sbjct: 386 MKFPIIKSQKSNQMLTSSRYRCEECKNDYCIDCDVFIHESLHTCPGCES 434
>gi|156050059|ref|XP_001590991.1| hypothetical protein SS1G_07615 [Sclerotinia sclerotiorum 1980]
gi|154692017|gb|EDN91755.1| hypothetical protein SS1G_07615 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 479
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 165/414 (39%), Positives = 244/414 (58%), Gaps = 39/414 (9%)
Query: 25 NGGLEAWERSYAD-DRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQK 83
NGG ++ D RSW+ + E G + + +R LRD T +Q+
Sbjct: 49 NGGGNRRRAAWEDIQRSWDTVVEGADGSINSAVEGLREANKRKRLLRD------TTPLQR 102
Query: 84 GLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVAN 143
G+IR+L +++DLS + E D RP+R + + FV E+F+QNP+SQ+G++ ++DG+A
Sbjct: 103 GIIRHLILILDLSFSMTEKDMRPTRYLLTLRYASEFVTEYFEQNPISQLGIIGMRDGIAV 162
Query: 144 CLTDLGGSPESHI---KALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSAL 200
++D+ G+P HI K+L G G+ SLQNAL++ + L PS+G RE+LI+Y AL
Sbjct: 163 RISDMSGNPTEHIERLKSLRVDQG-QGNPSLQNALEMSRAALFHAPSHGTREILIIYGAL 221
Query: 201 STCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGG----SYSVALDESHFKE 256
T DPGDI ETI +IR S++GL+A++ IC +C T +YSVAL+E HF++
Sbjct: 222 LTSDPGDIHETISSLIADRIRVSIVGLAAQVAICAEICSRTNAGDDTAYSVALNEEHFRQ 281
Query: 257 LIMEHAPPPPA-IAEFAIANLIKMGFPQRA-GEG-SISICSCHKEVKVGVGYTCPRCKAR 313
L+M PP + + ++L+ MGFP R G G S+S C+CH ++ G GY C RC ++
Sbjct: 282 LMMATTTPPVTRTKKQSHSSLLMMGFPSRTLGPGKSMSFCACHGKLSRG-GYLCSRCGSK 340
Query: 314 VCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL 373
VC LP +C CGL L+ S HLARSYHHLFP+ + EV L ++R+ C+GCQ
Sbjct: 341 VCSLPAECPACGLTLILSTHLARSYHHLFPLRNWVEV----LWKDAGKTRA-CYGCQAPF 395
Query: 374 --------------LSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 413
L S ++ G Y AC C HFC++CD++ H+ +HNCPGC+S
Sbjct: 396 PRRDEHEKGAPEPGLKSMSESGRY-ACEVCGNHFCIDCDVFAHDVVHNCPGCQS 448
>gi|50551723|ref|XP_503336.1| YALI0D26862p [Yarrowia lipolytica]
gi|49649204|emb|CAG81542.1| YALI0D26862p [Yarrowia lipolytica CLIB122]
Length = 496
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 171/412 (41%), Positives = 236/412 (57%), Gaps = 36/412 (8%)
Query: 25 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKG 84
NGG +WE Y RSW+ +QEDE G L + A+ +R ++D + Q+G
Sbjct: 44 NGGY-SWEDEY--HRSWDVVQEDEGGSLAG-SVAGLVEARKKRHIKDAT------PFQRG 93
Query: 85 LIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 144
+IR L +V+D S A E D RP+R V FV FFDQNP+SQ+G++ +++G A
Sbjct: 94 IIRNLILVLDFSFAMKESDLRPNRYQFVINHAIEFVTNFFDQNPISQLGILGMRNGQAIS 153
Query: 145 LTDLGGSPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALST 202
++ LG +P HI AL KL GD SLQNAL++ +GLL +PS+ +EVL++ AL +
Sbjct: 154 ISTLGSNPNDHINALTAAKKLEPQGDPSLQNALEMARGLLFHVPSHCTKEVLVVLGALLS 213
Query: 203 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDT----GGSYSVALDESHFKELI 258
DPGDI TI K K+R VIGL+A++ ICK LC T Y V L+E HF+EL+
Sbjct: 214 ADPGDIHVTIDKLVIDKVRARVIGLAAQVAICKELCVKTNFGDASYYGVVLNEQHFQELM 273
Query: 259 MEHAPPPPAIAEFAIAN---LIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVC 315
E P + AN L+ MGFP + E + S+ + + G GY CP+CK +V
Sbjct: 274 DEATTPLAESQQSQSANPASLVLMGFPSKVSEAAPSLSASDAALTQG-GYVCPQCKVKVS 332
Query: 316 ELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQ----- 370
LPT C CGL L+ S HLARSYHHLFP+APF EV C N ++ C GCQ
Sbjct: 333 SLPTVCPCCGLTLILSTHLARSYHHLFPLAPFIEVP--CKNAHKSE---FCAGCQSKFPV 387
Query: 371 -----QSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLRHS 417
+++ + G+ Y CP C HFC++CD++ HE LHNC GC++ +S
Sbjct: 388 VARDAKNIQADGSMTSRY-ECPTCHSHFCIDCDVFCHEILHNCIGCQARSYS 438
>gi|195160565|ref|XP_002021146.1| GL24973 [Drosophila persimilis]
gi|194118259|gb|EDW40302.1| GL24973 [Drosophila persimilis]
Length = 445
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 157/414 (37%), Positives = 243/414 (58%), Gaps = 30/414 (7%)
Query: 20 EDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTA 79
+DD + WE Y +++WEA+++DE G L A+ +R+ + T
Sbjct: 3 DDDRDDQKEYRWETGY--EKTWEAIKDDEDGLLDGAIADIIQKAKRQRQAQ------KTK 54
Query: 80 RIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKD 139
+ + G++R+L+I++D S + + D +P+R+ K +E F+ EFFDQNP+SQ+G++ +K
Sbjct: 55 QNRLGMMRHLFIILDCSESMSVPDLKPTRLRCTIKLLEQFIEEFFDQNPISQMGIIALKA 114
Query: 140 GVANCLTDLGGSPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILY 197
A +T+L G+ H+KAL G + + + SLQN LDL L +PS+ RE++I+
Sbjct: 115 KRAEKITELTGTSRVHLKALEGLANVPLTSEPSLQNGLDLALKTLKVVPSHASREIVIVM 174
Query: 198 SALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKEL 257
+L+TCDP DI TI + K+ IRCSVI LSAE+ I ++L Q T G++ LD++HF++
Sbjct: 175 GSLTTCDPVDINLTIDELKKEGIRCSVISLSAEIHIARYLTQQTRGTFGAVLDDAHFRDQ 234
Query: 258 IMEHAPPPPAIAEFAIANLIKMGFPQRAGE-----GSISICSCHKE------VKVGVGYT 306
+M PPPA A+ +LI+MGFP E +S+C CH E G+
Sbjct: 235 LMSQVDPPPA-AKTQHNSLIRMGFPHTKNEVEGKDAPLSMCMCHIENLEEPSELCTTGHH 293
Query: 307 CPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEV----TPLCLND--PRN 360
CP+C ++ CELP +C+ CGL LVS+PHLARSYHHLFP+ F+E+ P +D
Sbjct: 294 CPQCNSKYCELPVECQSCGLTLVSAPHLARSYHHLFPVPNFEEIPFDSLPKASSDRGGTG 353
Query: 361 RSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESL 414
+ C+ C + + +K C CK+ FCL+CDI+IH++LH C GC ++
Sbjct: 354 TGTTECYACMKLFVPVADK--TVFKCGFCKQFFCLDCDIFIHDTLHACVGCNTI 405
>gi|390351315|ref|XP_782325.3| PREDICTED: general transcription factor IIH subunit 2-like
[Strongylocentrotus purpuratus]
Length = 500
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 154/342 (45%), Positives = 221/342 (64%), Gaps = 23/342 (6%)
Query: 21 DDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTAR 80
DD G WE Y +R+WEALQEDE G L+ + A+ RRRL DR +
Sbjct: 3 DDEPEKGY-TWEGDY--ERTWEALQEDEEGSLQATVDDIIQRAK-RRRLEDRP-----SN 53
Query: 81 IQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDG 140
++ G++R+L+I++D SR+ + D +P+R+A K +E F+ E+FDQNP+SQ+G++T +
Sbjct: 54 VRLGMMRHLFILLDCSRSMEDQDLKPNRLACCTKLLEHFIEEYFDQNPISQVGIITSSNM 113
Query: 141 VANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYS 198
A LT+LGG+P+ HI AL C + SLQNAL+L L +P + RE+L++
Sbjct: 114 RAEKLTELGGNPQRHITALEKCNDKPCVKEPSLQNALELAAATLRHMPGHASREILVIMG 173
Query: 199 ALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELI 258
+L+TCDPG+I +TIQ K+ IRC VIGL+A++ +C+ L T G+Y V LDE+HFKEL+
Sbjct: 174 SLTTCDPGNIHDTIQAMKDHSIRCCVIGLAADVRVCRKLATVTHGTYGVILDETHFKELL 233
Query: 259 MEHAPPPPAIAEFAIANLIKMGFPQ------RAGEGSISICSCHKEVK----VGV-GYTC 307
MEH PPPA + I+MGFPQ ++ + S+C CH + K G GY C
Sbjct: 234 MEHTIPPPARVNTE-PSPIRMGFPQHVIHTDKSKVSAPSMCMCHLDGKNSEGFGTGGYFC 292
Query: 308 PRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDE 349
P+C+++ CELP +CR+CGL LVS+PHLARS+HHLFP+ F+E
Sbjct: 293 PQCQSKYCELPVECRVCGLTLVSAPHLARSFHHLFPLDRFEE 334
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 56/98 (57%), Gaps = 8/98 (8%)
Query: 321 CRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKP 380
C GL LVS+PHLARS+HHLFP+ F+E D + C GCQ + +
Sbjct: 397 CLSSGLTLVSAPHLARSFHHLFPLDRFEEFK---REDHDHPDSLFCQGCQSHI-----RD 448
Query: 381 GLYVACPKCKKHFCLECDIYIHESLHNCPGCESLRHSN 418
CPKC FCL+C+++I ESLH+CPGC S R S
Sbjct: 449 QTAYRCPKCSNVFCLDCELFIQESLHSCPGCASTRPSQ 486
>gi|198464821|ref|XP_001353376.2| GA10767 [Drosophila pseudoobscura pseudoobscura]
gi|198149896|gb|EAL30883.2| GA10767 [Drosophila pseudoobscura pseudoobscura]
Length = 445
Score = 294 bits (753), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 156/414 (37%), Positives = 243/414 (58%), Gaps = 30/414 (7%)
Query: 20 EDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTA 79
+DD + WE Y +++WEA+++DE G L A+ +R+ + T
Sbjct: 3 DDDRDDQKEYRWETGY--EKTWEAIKDDEDGLLDGAIADIIQKAKRQRQAQ------KTK 54
Query: 80 RIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKD 139
+ + G++R+L+I++D S + + D +P+R+ K ++ F+ EFFDQNP+SQ+G++ +K
Sbjct: 55 QNRLGMMRHLFIILDCSESMSVPDLKPTRLRCTIKLLDQFIEEFFDQNPISQMGIIALKA 114
Query: 140 GVANCLTDLGGSPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILY 197
A +T+L G+ H+KAL G + + + SLQN LDL L +PS+ RE++I+
Sbjct: 115 KRAEKITELTGTSRVHLKALEGLANVPLTSEPSLQNGLDLALKTLKVVPSHASREIVIVM 174
Query: 198 SALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKEL 257
+L+TCDP DI TI + K+ IRCSVI LSAE+ I ++L Q T G++ LD++HF++
Sbjct: 175 GSLTTCDPVDINLTIDELKKEGIRCSVISLSAEIHIARYLTQQTRGTFGAVLDDAHFRDQ 234
Query: 258 IMEHAPPPPAIAEFAIANLIKMGFPQRAGE-----GSISICSCHKE------VKVGVGYT 306
+M PPPA A+ +LI+MGFP E +S+C CH E G+
Sbjct: 235 LMSQVDPPPA-AKTQHNSLIRMGFPHTKNEVEGKDAPLSMCMCHIENLEEPSELCTTGHH 293
Query: 307 CPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEV----TPLCLND--PRN 360
CP+C ++ CELP +C+ CGL LVS+PHLARSYHHLFP+ F+E+ P +D
Sbjct: 294 CPQCNSKYCELPVECQSCGLTLVSAPHLARSYHHLFPVPNFEEIPFDSLPKASSDRGGTG 353
Query: 361 RSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESL 414
+ C+ C + + +K C CK+ FCL+CDI+IH++LH C GC ++
Sbjct: 354 TGTTECYACMKLFVPVADK--TVFKCGFCKQFFCLDCDIFIHDTLHACVGCNTI 405
>gi|443898092|dbj|GAC75430.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH, subunit SSL1 [Pseudozyma antarctica
T-34]
Length = 498
Score = 294 bits (752), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 156/415 (37%), Positives = 232/415 (55%), Gaps = 45/415 (10%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYL 89
+WE +Y RSW+A+ ED+SG L ++ RR L+D A +Q+G+IR+L
Sbjct: 95 SWEATYK--RSWDAVAEDDSGSLESAVRQMIEGSKRRRTLKD------MAPVQRGIIRHL 146
Query: 90 YIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
++IDLS + E D RP+R V + FV E+FDQNP+ Q+ ++ ++G+A L +G
Sbjct: 147 VLLIDLSASMLEKDMRPNRFDVTLQYAREFVNEYFDQNPIGQLSVIGTREGIAERLAMMG 206
Query: 150 GSPESHIKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 207
G+ H +L K L G+ SLQNAL++ + L +P+ RE+L ++ +L+TCDPG+
Sbjct: 207 GNTVDHTASLSNKRRLEPRGEPSLQNALEMARSSLVHLPASNSREILAIFGSLTTCDPGN 266
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 267
I +TI + IR SV+ L+AE+ + K +C TGG +SVAL+E HF + + + PPP
Sbjct: 267 IHDTINTLVKDNIRVSVVHLAAEVKVFKDVCTRTGGVFSVALNEGHFHDALFDLVPPPAV 326
Query: 268 IA------------EFAIAN---LIKMGFPQR-AGEGSISICSCHKEVKVGVGYTCPRCK 311
E + N L++M FP R + ++C+CH + G GY CPRC
Sbjct: 327 DGPRKGKRRAGVQEEEEVQNGVDLLQMAFPLRLPAHAAPTLCACHSRSR-GSGYLCPRCG 385
Query: 312 ARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC-- 369
+VC++PTDC +CG+ +V S HLARSYHHLFP+ + V + D R+ CF C
Sbjct: 386 VKVCDVPTDCPVCGITIVMSTHLARSYHHLFPVPNWKAVAWEAVGD---RAEDACFSCNL 442
Query: 370 -------------QQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
++L +G P C +C FCLECD ++HE LH CPGC
Sbjct: 443 QFPKKDDNRTAAANKALEDAGLSPSSRYRCTRCNHDFCLECDAFVHEQLHVCPGC 497
>gi|212537907|ref|XP_002149109.1| RNA polymerase TFIIH complex subunit Ssl1, putative [Talaromyces
marneffei ATCC 18224]
gi|210068851|gb|EEA22942.1| RNA polymerase TFIIH complex subunit Ssl1, putative [Talaromyces
marneffei ATCC 18224]
Length = 453
Score = 293 bits (751), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 165/448 (36%), Positives = 254/448 (56%), Gaps = 43/448 (9%)
Query: 1 MTNSERKRLNGEAEEEEEDEDDNLNGGLEAWER------SYADDRSWEALQEDESGFLRP 54
M +S+ + + +E+E + + G + + ++ R+WE++ E G +
Sbjct: 1 MADSDEEYVGSGSEDEIDAHIVSSGAGTRSTRKKQRGGATFEVSRTWESVVEGADGTISS 60
Query: 55 IDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAK 114
+ +R LRD T +Q+G+IR+L +V+DLS++ AE D RP+R + +
Sbjct: 61 TVEGLLEAGKRKRLLRD------TTPLQRGIIRHLILVLDLSQSMAEKDIRPTRYLLALR 114
Query: 115 QVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQ 172
+ FV EFF+QNP+SQ+G++ ++DG+A ++D+ G+P HI A+ + G SLQ
Sbjct: 115 YAQEFVIEFFEQNPISQLGVIGMRDGLAVRISDMSGNPTDHITAIHALRPDDPKGLPSLQ 174
Query: 173 NALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMF 232
NAL++ +G L PS+G REVLI++ +L + DPGDI +T++ KIR ++GL+A++
Sbjct: 175 NALEMARGALFHTPSHGTREVLIVFGSLLSSDPGDIHQTLKSLIADKIRVGIVGLAAQVA 234
Query: 233 ICKHLCQDTGGS----YSVALDESHFKELIMEHAPPPPAIA-EFAIANLIKMGFPQRAGE 287
IC+ LC T G Y VAL+E HF+EL+M+ PP A + + + L+ MGFP R E
Sbjct: 235 ICRELCAKTNGGDDSVYGVALNEQHFRELMMDVTIPPAAYSYRKSSSALLMMGFPSRTVE 294
Query: 288 GSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPF 347
S+C+CH + G GY C RC +VC LP +C CGL L+ S HLARSYHHLFP+ +
Sbjct: 295 SFPSLCACHSKPSCG-GYLCSRCGNKVCGLPAECPSCGLTLILSTHLARSYHHLFPLINW 353
Query: 348 DEVTPLCLNDPRNRS-RST-CFGC--QQSLLSSGNKPGLY------------VACPKCKK 391
EV P R+ RST C+ C Q + ++ G + C C
Sbjct: 354 VEV-------PWKRALRSTNCYACGIQFPTVPPADQWGAFENQAKGMSVSSRYECSACHN 406
Query: 392 HFCLECDIYIHESLHNCPGCESLRHSNP 419
HFC++CD++ HE +HNCPGC+S P
Sbjct: 407 HFCIDCDLFAHEIVHNCPGCQSTNFMKP 434
>gi|398406773|ref|XP_003854852.1| hypothetical protein MYCGRDRAFT_37615 [Zymoseptoria tritici IPO323]
gi|339474736|gb|EGP89828.1| hypothetical protein MYCGRDRAFT_37615 [Zymoseptoria tritici IPO323]
Length = 445
Score = 293 bits (751), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 168/445 (37%), Positives = 242/445 (54%), Gaps = 48/445 (10%)
Query: 10 NGEAEEEEEDEDDNLNGGLEAWERSYADDR-SWEA-------LQEDESGFLRPIDNSAFY 61
+GE + D++ NGG RS + SWEA L+E G + +
Sbjct: 5 DGEYDGHGSDDEIATNGGRAMPSRSKGRAQASWEAGATRAWELKEAPDGSIEGVLGGIEE 64
Query: 62 HAQYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVR 121
++ +R L+D T +Q+G+IR+ +++DLS A E D RP+R + AF+R
Sbjct: 65 ASKRKRLLKD------TTPLQRGIIRHTILMLDLSVAMLEKDLRPTRHLLTITYTIAFIR 118
Query: 122 EFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGC--SGDSSLQNALDLVQ 179
EFF+QNP+SQ+G++ +++G+A ++D+ G+P HI A+ G G+ SLQN LD+ +
Sbjct: 119 EFFEQNPISQLGILGMREGLAIRVSDMSGNPNDHIAAVRALRGTDPKGNPSLQNGLDMAR 178
Query: 180 GLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQ 239
L PS+G REV+I+ AL T DPGDI +TI+ C + +IR ++IGL+A+M IC +C+
Sbjct: 179 AALYHTPSHGTREVVIILGALLTSDPGDIHDTIKACIKDRIRVTIIGLAAQMHICAEICR 238
Query: 240 DTGGS----YSVALDESHFKELIMEHAPPPPAIAEFAIAN------LIKMGFPQRAGEGS 289
T Y+VA+DE HF+EL+M PP + A A L+ MGFP R E
Sbjct: 239 KTNAGDDNCYNVAVDEVHFRELLMGITTPPVVRSTDAEAQKLNQAALLMMGFPSRIVEEH 298
Query: 290 ISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDE 349
++C+CH + G GY C RCKA+VC LP C C L L+ S HLARSYHHLFP+ + E
Sbjct: 299 ATLCACHGNLTRG-GYLCSRCKAKVCSLPATCPTCDLTLILSTHLARSYHHLFPLQNWVE 357
Query: 350 VTPLCLNDPRNRSRSTCFGC------------------QQSLLSSGNKPGLYVACPKCKK 391
V+ +R CFGC S + G C C+
Sbjct: 358 VS---WQRAADRGSEQCFGCLSPFPRVHGATNGDDADKTYSKRAEGASESSRYECESCQN 414
Query: 392 HFCLECDIYIHESLHNCPGCESLRH 416
HFC++CD + HE+ HNCPGC S H
Sbjct: 415 HFCIDCDCFNHETSHNCPGCTSSTH 439
>gi|378727991|gb|EHY54450.1| transcription initiation factor TFIIH subunit H2, variant
[Exophiala dermatitidis NIH/UT8656]
gi|378727992|gb|EHY54451.1| transcription initiation factor TFIIH subunit H2 [Exophiala
dermatitidis NIH/UT8656]
Length = 464
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 156/407 (38%), Positives = 236/407 (57%), Gaps = 30/407 (7%)
Query: 33 RSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLYIV 92
+++ R+W+ L E G + + +R L+D T +Q+G+IR+L ++
Sbjct: 36 QNFEVTRTWDLLTEGADGTITGAVEGLLEAGKRKRLLKD------TTPLQRGIIRHLILI 89
Query: 93 IDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSP 152
ID+S A E D RP+R + E+F+REFF+QNP+SQ+G+V ++DG+A ++D+ G+P
Sbjct: 90 IDMSIAMMEKDLRPTRYLLTLMYTESFIREFFEQNPISQLGIVGMRDGIAVRVSDMSGNP 149
Query: 153 ESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIME 210
+H+ A+ + K G SL+NAL++ + L PS+G REVL+++ AL T DPGDI
Sbjct: 150 TAHLAAIQKIRKQEPKGQPSLENALEMARAALFHAPSHGTREVLLIFGALHTSDPGDIHR 209
Query: 211 TIQKCKESKIRCSVIGLSAEMFICKHLCQDTGG----SYSVALDESHFKELIME-HAPPP 265
TI KIR +VIGL+A++ +C L T +Y V L E H++EL+M PP
Sbjct: 210 TIDNLVTDKIRATVIGLAAQVAVCAELVSKTNNGDLSNYGVVLHEQHYRELLMAVTTPPV 269
Query: 266 PAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICG 325
+ + + ++L+ MGFP R E S+C+CH GY C RC +VC LP++C +CG
Sbjct: 270 TSESTKSASSLLMMGFPSRTVEDYPSLCACHTNPSRD-GYLCSRCSTKVCGLPSECPVCG 328
Query: 326 LQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC----------QQSLLS 375
L L+ S HLARSYHHLFP+ + EV P RS++ CF C +Q +
Sbjct: 329 LTLILSTHLARSYHHLFPLVNWLEV-PW---SQAYRSKA-CFACLKQFPVVPPREQWTAA 383
Query: 376 SGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLRHSNPIVA 422
G Y CP C HFC++CD++ HE +HNCPGC+S+R ++
Sbjct: 384 KTTTSGRY-ECPVCHHHFCIDCDLFAHEVVHNCPGCQSVRMQTSLMG 429
>gi|195440790|ref|XP_002068223.1| GK12882 [Drosophila willistoni]
gi|194164308|gb|EDW79209.1| GK12882 [Drosophila willistoni]
Length = 454
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 153/397 (38%), Positives = 237/397 (59%), Gaps = 30/397 (7%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +++WEA++ED+ G L A+ +R+L T + + G++R+++
Sbjct: 11 WETGY--EKTWEAIKEDDDGMLDGAIADIIQKAKRQRQLE------KTKQNRLGMMRHVF 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+VID S + + D +P+R+ K +E F+ EFFDQNP+SQ+G++ +K A +T+L G
Sbjct: 63 LVIDCSESMSVPDLKPTRLRCTLKLLEIFIDEFFDQNPISQLGIIALKAKRAEKITELTG 122
Query: 151 SPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+ H+KAL + + + + SLQN LD+ L +PS+ RE++I+ +L+TCDP DI
Sbjct: 123 TSRVHLKALESLANVVLTSEPSLQNGLDMALKTLKVVPSHASREIVIIMGSLTTCDPVDI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
TI + K+ IRCSVI LSAE+ + ++L ++T GSY LD++HF++ ++ PPPA
Sbjct: 183 NLTINELKKEGIRCSVISLSAEIHVARYLAKETMGSYGAVLDDAHFRDQLLSQVDPPPA- 241
Query: 269 AEFAIANLIKMGFPQRAG------EGSISICSCHKEVK------VGVGYTCPRCKARVCE 316
A+ +LI+MGFP + +S+C CH E G+ CP+C ++ CE
Sbjct: 242 AKTQHNSLIRMGFPHSTSNEADGKDAPLSMCMCHIENVDEPSELSTTGHYCPQCHSKYCE 301
Query: 317 LPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSS 376
LP +C+ C L LVS+PHLARSYHH+FP+ F+E+ L P + CF C + L +
Sbjct: 302 LPVECQSCDLTLVSAPHLARSYHHIFPVPNFEEMPHDQLPGP-----TECFSCAKLLATV 356
Query: 377 GNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 413
+K C C + FCL+CDI+IHE+LH C GC S
Sbjct: 357 ADK--TVYKCIHCGEVFCLDCDIFIHETLHACVGCNS 391
>gi|256075586|ref|XP_002574099.1| btf [Schistosoma mansoni]
gi|360045424|emb|CCD82972.1| putative btf [Schistosoma mansoni]
Length = 423
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 166/422 (39%), Positives = 241/422 (57%), Gaps = 51/422 (12%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFY--HAQYRRRLRDRSLVATTARIQKGLIRY 88
WE Y +++W A++EDESG L + H Q R++ R R V +T ++ G++R+
Sbjct: 14 WESGY--EKTWSAIREDESGRLVTTLEQLIHDAHTQIRKK-RRRIGVGSTGFVRLGMMRH 70
Query: 89 LYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL 148
L+++IDLS+A E D +P+R+ K FVRE+FDQNP+SQ+G++ D A LT+L
Sbjct: 71 LFLIIDLSQAMNEQDLKPNRLICTVKAACTFVREYFDQNPISQLGIIVTSDRRAERLTEL 130
Query: 149 GGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPG 206
G+P H+ AL + C G+ SLQNAL L + L + H E+++L ++L+TCDP
Sbjct: 131 SGNPRPHLAALQSLYTRTCIGEPSLQNALLLAESRLKY--TIHHNEIVVLMASLTTCDPS 188
Query: 207 DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPP 266
DI +TI+ ++IRCSVI L+ E+F+ + L Q T G++ V +DE H K ++ + PPP
Sbjct: 189 DIHQTIKSLSSNRIRCSVISLAVEVFVYRALAQLTQGTFHVIMDELHLKNVLKDLVPPPV 248
Query: 267 AIAEFAIANLIKMGFPQRAG----EGSISICSCHKEVKVGVG---------YTCPRCKAR 313
A E ANLI+MGFP ++ C CH K Y CPRC +
Sbjct: 249 AAIETE-ANLIRMGFPHSETFDLDRFAVKRCMCHLSNKPTNDKTDTTTNPHYACPRCHSA 307
Query: 314 VCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEV--------TPLCLNDPRNRSRST 365
CELP +C +CGL LV++PHLAR+YHHLFP+ F+ V T L D + +S+ T
Sbjct: 308 YCELPVECNVCGLTLVAAPHLARAYHHLFPLDLFEPVNGSGSFSETSL---DNQEKSKET 364
Query: 366 -------------CFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCE 412
CFGC +++ PG CPKCK FC CD +H+S+H+CPGC
Sbjct: 365 IDSADSVDHQQRLCFGC--NVIIPSKIPG--YQCPKCKFIFCHSCDAVLHDSIHSCPGCL 420
Query: 413 SL 414
+L
Sbjct: 421 TL 422
>gi|345568422|gb|EGX51316.1| hypothetical protein AOL_s00054g386 [Arthrobotrys oligospora ATCC
24927]
Length = 542
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 164/436 (37%), Positives = 235/436 (53%), Gaps = 60/436 (13%)
Query: 29 EAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRY 88
E WE RSW+ + E G + + +R LRD T IQ+G+IR+
Sbjct: 59 EKWEDI---QRSWDNVVEGADGSIAGTVIGLLEATKRKRLLRD------TTPIQRGIIRH 109
Query: 89 LYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL 148
L +++DLS A E D RP+R + + FV E+F+QNP+SQ+ ++ + DG+A ++D+
Sbjct: 110 LVLILDLSSAMLEKDLRPTRFLLTLRYARDFVTEYFEQNPISQLSIIGMHDGLALRISDM 169
Query: 149 GGSPESHIKALMGK---LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDP 205
GG+P H+ AL K + G SSLQNAL++ + L P++G RE+L+++ ALS+ DP
Sbjct: 170 GGNPADHLTALQEKAFTVEPKGASSLQNALEMGRAELFHTPTHGTREILLIFGALSSSDP 229
Query: 206 GDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELIMEH 261
GDI +TI E +I+ ++GL+A++ +C+ L T +Y V LDE H++EL+M
Sbjct: 230 GDIHDTINSLIEDRIQVRIVGLAAQVAVCRELVMKTNDGDDSAYGVILDEGHYRELMMAA 289
Query: 262 APPP-PAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTD 320
PP E ++ +L+ MGFP R E S+CSCH + G GY CPRC A+VC LPT+
Sbjct: 290 TTPPVTKTEEKSVPSLLMMGFPSRTVEKHESLCSCHSNLTKG-GYICPRCTAKVCFLPTE 348
Query: 321 CRICGLQLVSSPHLARSYHHLFPIAPFDEV---------------TPLCLNDPRNRS--- 362
C CGL L+ S HLARSYHHLFP+ + EV +P N + S
Sbjct: 349 CPCCGLTLILSTHLARSYHHLFPLKNWVEVPWSEAHTSTHCWSCQSPFPTNQSQTSSIKI 408
Query: 363 --RSTCFGCQQSLLSSGNKPGLYVACPK----------------------CKKHFCLECD 398
R+ + S N PK CK HFC++CD
Sbjct: 409 KIRNPSTTAATATASRSNGATTTSTAPKNDHQQQQQQPPQPPTQRYACTDCKTHFCIDCD 468
Query: 399 IYIHESLHNCPGCESL 414
I+ HESLHNCPGC+SL
Sbjct: 469 IFTHESLHNCPGCQSL 484
>gi|340518378|gb|EGR48619.1| predicted protein [Trichoderma reesei QM6a]
Length = 480
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 180/419 (42%), Positives = 242/419 (57%), Gaps = 52/419 (12%)
Query: 25 NGGLEAWERSYADDRSWEA-LQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQK 83
NGG +AWE+S R+WE L E+ G L N A Y A+ RR L+ T +Q+
Sbjct: 46 NGGSKAWEQSR---RTWETDLPEESDGML----NLAGYEAERRR-----RLLRDTTPLQR 93
Query: 84 GLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVAN 143
G+IR+L +V+D+S A AE D P+R + AFVRE+F+QNP+SQ+ +V ++DGVA
Sbjct: 94 GIIRHLVLVLDMSFAMAEKDLLPTRYRLALSYAAAFVREYFEQNPISQLAIVGMRDGVAL 153
Query: 144 CLTDLGGSPESHIKALMGKLG--CSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALS 201
++D+GG+P H++ L G SG+ SLQNAL++ +G L PS+G REVLI+Y AL
Sbjct: 154 RVSDMGGNPAEHLERLREYEGQDPSGNPSLQNALEMCRGALFHAPSHGTREVLIIYGALL 213
Query: 202 TCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKEL 257
+ DPGDI +TI +IR SV+GLSA++ IC LC T Y+VA+DE+HFKEL
Sbjct: 214 SSDPGDIHDTINNLVAERIRVSVVGLSAQVAICAELCSRTNVGDDSQYNVAMDETHFKEL 273
Query: 258 IME-HAPPPPAIAEFAIANLIKMGFPQR--AGEGSISICSCHKEVKVGVGYTCPRCKARV 314
+ PP E + A+L+ MGFP R A G+ S C+CH + GY C RC +V
Sbjct: 274 FLALTTPPVNRTKEQSTASLLMMGFPSRTLAPGGTSSYCACHSQ-PCREGYLCTRCGVKV 332
Query: 315 CELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRST-CFGCQQSL 373
C LP++C CGL L+ S HLARSYHHLFP+ + EV P +RST CF CQ
Sbjct: 333 CRLPSECPACGLTLILSTHLARSYHHLFPLRNWVEV-PWA-----EAARSTACFSCQSPF 386
Query: 374 LS--SGNK-------------------PGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
NK G Y C C HFC++CD++ H +HNCPGC
Sbjct: 387 PEPPKANKEKGKDEAAPAKAPAKGVSESGRY-KCQVCDHHFCIDCDVFAHMVIHNCPGC 444
>gi|389623489|ref|XP_003709398.1| RNA polymerase TFIIH complex subunit Ssl1 [Magnaporthe oryzae
70-15]
gi|351648927|gb|EHA56786.1| RNA polymerase TFIIH complex subunit Ssl1 [Magnaporthe oryzae
70-15]
gi|440469566|gb|ELQ38674.1| suppressor of stem-loop protein 1 [Magnaporthe oryzae Y34]
gi|440482863|gb|ELQ63315.1| suppressor of stem-loop protein 1 [Magnaporthe oryzae P131]
Length = 516
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 177/452 (39%), Positives = 243/452 (53%), Gaps = 89/452 (19%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRR-LRDRSLVATTARIQKGLIRY 88
AWE RSW+ + E + G L F A+ RRR LRD T IQ+G+IR+
Sbjct: 52 AWEDLQ---RSWDVVHELDDGNLSL---EGFLEAEKRRRVLRD------TTPIQRGIIRH 99
Query: 89 LYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL 148
L +VID+S A AE D P+R + FVRE+FDQNP+SQ+ +V ++D +A ++DL
Sbjct: 100 LVLVIDMSFAMAEKDLMPTRHRLTISYAIEFVREYFDQNPISQLAIVGMRDSIAVRISDL 159
Query: 149 GGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPG 206
G+P HI+ L + L SG SLQNAL++ +G L PS+G REV+I++ AL + DPG
Sbjct: 160 SGNPAEHIEKLRALPDLDPSGSPSLQNALEMCRGALFNTPSHGTREVVIIFGALLSLDPG 219
Query: 207 DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDT----------------GGSYSVALD 250
DI ETI + +IR SVIGL+A+++IC+ +C+ T G +Y+VAL
Sbjct: 220 DIHETIDGLMQDRIRVSVIGLAAQVYICEEICRRTNSGKAAADLGIVTDTDGSAYNVALH 279
Query: 251 ESHFKELIMEHAPPPPA------IAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVG 304
E HF+EL+M PP A A+L+ MGFP R + ++CSCH V G
Sbjct: 280 EVHFRELLMSATRPPVTRQSQLQQATGETASLLMMGFPSRKTDKDPALCSCHNR-PVRNG 338
Query: 305 YTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRS-R 363
+ C RC +RVC LP++C CGL L+ S HLARSYHHLFP+ + EV P N + R
Sbjct: 339 FLCTRCGSRVCRLPSECPACGLTLILSTHLARSYHHLFPLKIWSEV-------PWNDAVR 391
Query: 364 S-TCFGCQQSLLSSGNK-----------------------------------------PG 381
S +CF C + NK G
Sbjct: 392 SVSCFACHAPFPDAKNKDADKGKDAEKDPGDKHLKVPSKDTNGKKKKPAAPVPKGVSESG 451
Query: 382 LYVACPKCKKHFCLECDIYIHESLHNCPGCES 413
Y+ C C+ HFC++CD++ HE LHNCPGC+S
Sbjct: 452 RYM-CQVCRHHFCIDCDVFSHEVLHNCPGCQS 482
>gi|358391363|gb|EHK40767.1| hypothetical protein TRIATDRAFT_78413 [Trichoderma atroviride IMI
206040]
Length = 476
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 173/419 (41%), Positives = 245/419 (58%), Gaps = 53/419 (12%)
Query: 27 GLEAWERSYADDRSWEA-LQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGL 85
G +AWE+S R+WE L E++ G L N A Y A+ RR L+ T +Q+G+
Sbjct: 46 GSKAWEQS---KRTWETDLPEEDDGML----NLAGYEAERRR-----RLLRDTTPLQRGI 93
Query: 86 IRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 145
IR+L +V+D+S A AE D P+R + AFVRE+F+QNP+SQ+G+V ++DGVA +
Sbjct: 94 IRHLVLVLDMSFAMAEKDLLPTRHRLTLSYAAAFVREYFEQNPISQLGIVGMRDGVAVRI 153
Query: 146 TDLGGSPESHIKALMGKLG--CSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTC 203
+D+GG+P H++ L G G+ SLQNAL++ +G L PS+G REVLI+Y AL +
Sbjct: 154 SDMGGNPAEHLERLRDLEGQDPQGNPSLQNALEMCRGALFHAPSHGTREVLIIYGALLSS 213
Query: 204 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS----YSVALDESHFKELIM 259
DPGDI +TI +IR SV+GLSA++ IC LC T Y+VA+DE+H++EL +
Sbjct: 214 DPGDIHDTIGNLIADRIRVSVVGLSAQVAICAELCSRTNAGDESQYNVAMDETHYRELFL 273
Query: 260 EHAPPP-PAIAEFAIANLIKMGFPQR--AGEGSISICSCHKEVKVGVGYTCPRCKARVCE 316
PP E + ++L+ MGFP R A G+ S C+CH + GY C RC A+VC
Sbjct: 274 AATTPPVNRTKEQSTSSLLMMGFPSRTLAPGGTTSYCACHSK-PCREGYLCTRCSAKVCR 332
Query: 317 LPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRST--CFGCQ---- 370
LP++C CGL L+ S HLARSYHHLFP+ + EV P + + CF CQ
Sbjct: 333 LPSECPACGLTLILSTHLARSYHHLFPLRNWVEV-------PWAEATQSIACFSCQTFFP 385
Query: 371 ----------------QSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 413
++L ++ G Y C C HFC++CD++ H +HNCPGC+S
Sbjct: 386 EPPKSIKDKGKDEAPAKALAKGVSESGRY-KCQVCGNHFCIDCDVFAHMVIHNCPGCQS 443
>gi|254577733|ref|XP_002494853.1| ZYRO0A11176p [Zygosaccharomyces rouxii]
gi|238937742|emb|CAR25920.1| ZYRO0A11176p [Zygosaccharomyces rouxii]
Length = 477
Score = 291 bits (745), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 169/424 (39%), Positives = 240/424 (56%), Gaps = 28/424 (6%)
Query: 4 SERKRLNGEAEEEEEDEDDNLNG--GLEAWERSYADDRSWEALQEDESGFLRPIDNSAFY 61
S+ + NG + + + L G G AWE RSW+ + D+ G D +A
Sbjct: 63 SKDPKRNGRSARRNKTSNKALQGASGGYAWEDEIK--RSWDLVPADDEG-----DMAALA 115
Query: 62 HAQYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVR 121
+ R + R+ + Q+G+IR L +V+D S A E D RP+R A++ + FV
Sbjct: 116 ASIVESR-KKRTAQKNISPYQRGIIRTLILVLDCSEAMLEKDMRPNRHAMLVQYSIDFVH 174
Query: 122 EFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQ 179
EFFDQNP+SQIG+V++++G+A+ ++ + G+P+ H+ AL + K G+ SLQNAL++ +
Sbjct: 175 EFFDQNPISQIGIVSMRNGLAHMISQVSGNPQDHVDALKSIRKQEPKGNPSLQNALEMTR 234
Query: 180 GLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQ 239
GLL +P + +EVLI++ +LS+ DPGDI TI + IR +IGLSA++ IC+ LC+
Sbjct: 235 GLLLPVPPHCTKEVLIVFGSLSSTDPGDIHLTIGSLVQEGIRVKIIGLSAQVAICRELCK 294
Query: 240 DTG----GSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSC 295
T Y V LDE H KEL E P P L+KMGFP R E + + C+C
Sbjct: 295 ATNYGDESFYKVPLDEIHCKELFAEAVTPLPVNKINKGFTLVKMGFPTRIFEEAPTFCAC 354
Query: 296 HKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCL 355
H ++ G GY CP C+++VC LP C C L L+ S HLARSYHHL P+ F EV +
Sbjct: 355 HSKLLYG-GYFCPNCQSKVCSLPMVCPCCDLMLILSTHLARSYHHLMPLKTFSEVPTGQV 413
Query: 356 NDPRNRSRSTCFGCQQSLLSSGN-KPGLYVA-----CPKCKKHFCLECDIYIHESLHNCP 409
N CF CQ + N K G + C C K FC++CD++IHE LHNCP
Sbjct: 414 FPTEN-----CFSCQVRFPTVKNHKTGELLTSSRYRCEDCLKDFCIDCDVFIHEILHNCP 468
Query: 410 GCES 413
GCES
Sbjct: 469 GCES 472
>gi|408397644|gb|EKJ76784.1| hypothetical protein FPSE_02970 [Fusarium pseudograminearum CS3096]
Length = 469
Score = 291 bits (745), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 172/418 (41%), Positives = 241/418 (57%), Gaps = 53/418 (12%)
Query: 30 AWERSYADDRSWEA--LQEDESGFLRPIDNSAFYHAQYRRRL-RDRSLVATTARIQKGLI 86
AWE S R+WE +ED+ G L + A+ R+RL RD T +Q+G+I
Sbjct: 45 AWEVS---KRTWETGLPEEDQDGVL----SINVLEAEKRKRLLRD------TTPLQRGII 91
Query: 87 RYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLT 146
R++ +V+D+S A E D P+R ++ AFVREFF+QNP+SQ+G++ ++DGVA ++
Sbjct: 92 RHMVLVLDMSFAMIEKDLLPTRYRLMLSYAVAFVREFFEQNPISQLGIIGMRDGVAVRVS 151
Query: 147 DLGGSPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCD 204
D+GG+P H+ L G G+ SLQNAL++ +G L PS+G REV I+Y AL + D
Sbjct: 152 DVGGNPAEHLDKLKGLESQDPQGNPSLQNALEMCRGALFHAPSHGTREVFIIYGALLSSD 211
Query: 205 PGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDT----GGSYSVALDESHFKELIME 260
PGDI ETI +IR S++GLSA + IC LC T G Y++A+DE HF+EL +
Sbjct: 212 PGDIHETIGNLITDRIRVSIVGLSAHLAICADLCSRTNAGDGSQYNIAMDEVHFRELFLA 271
Query: 261 HAPPPPA-IAEFAIANLIKMGFPQRA--GEGSISICSCHKEVKVGVGYTCPRCKARVCEL 317
PP E + A+L+ MGFP R G+ S C+CH GY C RC ARVC +
Sbjct: 272 ATTPPVTRTVEQSTASLLMMGFPSRTLVPNGTTSYCACHNR-PCREGYLCTRCGARVCRI 330
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC-------- 369
P++C C L L+ S HLARSYHHLFP+ + EV P + + + CF C
Sbjct: 331 PSECPSCDLTLILSTHLARSYHHLFPLRNWIEV-PWA----KATTSAGCFSCLAPFPEPP 385
Query: 370 -----QQSLLSSG--------NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESL 414
+S SG ++ G Y AC C +HFC++CD++ HE +HNCPGC+SL
Sbjct: 386 KNKGHDKSKEDSGAPKTAKGVSESGRY-ACEVCGQHFCIDCDVFAHEIVHNCPGCQSL 442
>gi|207343219|gb|EDZ70748.1| YLR005Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 371
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 155/356 (43%), Positives = 214/356 (60%), Gaps = 18/356 (5%)
Query: 70 RDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPL 129
+ R+ Q+G+IR L + +D S A E D RP+R A++ + FV EFFDQNP+
Sbjct: 17 KKRTAKKNITPYQRGIIRSLILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPI 76
Query: 130 SQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPS 187
SQ+G++ +++G+A ++ + G+P+ HI AL + K G+ SLQNAL++ +GLL +P+
Sbjct: 77 SQMGIIIMRNGLAQLVSQVSGNPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPA 136
Query: 188 YGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----G 243
+ REVLI++ +LST DPGDI +TI KIR V+GLSA++ ICK LC+ T
Sbjct: 137 HCTREVLIVFGSLSTTDPGDIHQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNYGDES 196
Query: 244 SYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGV 303
Y + LDE+H KEL E P P L+KMGFP R E + + CSCH ++ G
Sbjct: 197 FYKILLDETHLKELFNEAVTPLPVNKINKGFTLVKMGFPTRIFEDTPTFCSCHSKLVYG- 255
Query: 304 GYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSR 363
GY CP C ++VC LPT C C L L+ S HLARSYHHL P+ F EV + RS
Sbjct: 256 GYFCPNCHSKVCSLPTVCPCCDLMLILSTHLARSYHHLMPLKTFAEVP----TTEKFRSE 311
Query: 364 STCFGCQQSL-LSSGNKPGLYVA-----CPKCKKHFCLECDIYIHESLHNCPGCES 413
CF CQ + +K G + C CK+ FC++CD++IHE LHNCPGCES
Sbjct: 312 D-CFSCQSRFPILKNHKNGKLLTSSRYRCEDCKQEFCVDCDVFIHEILHNCPGCES 366
>gi|341038582|gb|EGS23574.1| putative transcription factor [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 534
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 175/464 (37%), Positives = 243/464 (52%), Gaps = 96/464 (20%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRL-RDRSLVATTARIQKGLIRY 88
AWE RSWE + E E G I A A+ RRRL RD T +Q+G+IR+
Sbjct: 56 AWEDI---QRSWENVVETEDG---SITIEALIEAEKRRRLMRD------TTPLQRGIIRH 103
Query: 89 LYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL 148
L +V+D+S A AE D P+R + FVRE+F+QNP+SQ+G++ ++DG+A ++D+
Sbjct: 104 LVLVLDMSFAMAEKDLLPNRYLLTLNYAVDFVREYFEQNPISQMGIIAMRDGIAVRVSDM 163
Query: 149 GGSPESHIKAL---MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDP 205
G+P HI+ L G+ SLQNAL++ +G L PS+G REVLI+Y AL + DP
Sbjct: 164 SGNPADHIERLRFWAEHQEPQGNPSLQNALEMCRGALYHTPSHGTREVLIVYGALLSSDP 223
Query: 206 GDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELIMEH 261
GDI ETI + +IR +V+GL+A++ +C LC T +Y+VAL E HF+EL +
Sbjct: 224 GDIHETISNLVKDRIRVTVVGLAAQVAVCAELCTRTNHGDDSTYAVALHEQHFRELFLAA 283
Query: 262 APPPPAIAEFAI---------------ANLIKMGFPQR--AGEGSISICSCHKEVKVGVG 304
PPPA A A A+L+ MGFP R A +S+C+CH G
Sbjct: 284 TIPPPATASSATDKNGANGNANAASTDASLLMMGFPSRTLASASHVSLCACHSRPSRE-G 342
Query: 305 YTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRS 364
Y C RC+A+VC LP +C CGL L+ S HLARSYHHLFP+ + EV+ + R +
Sbjct: 343 YLCTRCRAKVCRLPAECPACGLTLILSTHLARSYHHLFPLKGWVEVS---WAEARKSKQV 399
Query: 365 TCFGC-------------------------------QQSLLSSGNK------PGLYVA-- 385
CF C Q+ SS N G+ +A
Sbjct: 400 GCFACLAPFPLPPAPGSEKTGKEPTQKTQGQAQQPPQERQGSSSNSNNAKKTTGISLATA 459
Query: 386 ----------------CPKCKKHFCLECDIYIHESLHNCPGCES 413
CP C KHFC++CD++ HE +HNCPGC++
Sbjct: 460 LPEARAVGVSESGRYKCPTCGKHFCIDCDVFAHEVIHNCPGCQA 503
>gi|353237926|emb|CCA69887.1| probable SSL1-TFIIH subunit (transcription initiation factor),
factor B [Piriformospora indica DSM 11827]
Length = 386
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 145/341 (42%), Positives = 217/341 (63%), Gaps = 29/341 (8%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYL 89
+WE SY RSW+ +QEDE G L+ + R R + L A T +++ +IR+L
Sbjct: 55 SWEESYT--RSWDVVQEDEEGSLQQA------VGDFLARSRRKRLQAPTETVRRTIIRHL 106
Query: 90 YIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
+VIDLS + + D RP+R + + FV E+FDQNPL QIG+V +++GVA + L
Sbjct: 107 ILVIDLSASMTDRDLRPNRFDLSLEYSREFVTEWFDQNPLGQIGIVGMREGVAERICGLS 166
Query: 150 GSPESHIKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 207
G+P +K + + L +G+ SLQNA+++ +G +S +P++ REVL+++ +L+TCDPG+
Sbjct: 167 GNPPDVLKTIADRRNLEPAGEPSLQNAIEMARGSMSHLPTHSSREVLVIFGSLTTCDPGN 226
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPP- 266
I ET++ C E KIR SV+ L+AEM IC+ C +TGG + VA++E H+++++ EH PPP
Sbjct: 227 IHETLKSCVEDKIRVSVVALAAEMKICRDFCTETGGLFGVAMNEGHYRDMLFEHVPPPAV 286
Query: 267 ----AIAEFA------------IANLIKMGFPQRAGEGSI-SICSCHKEVKVGVGYTCPR 309
A+A+ + L+ MGFP R E S S+C CH +K GY CPR
Sbjct: 287 RKIEAVAKISNGNGAGPAPAAATGELMMMGFPTRLPETSAPSLCVCHGIMK-SEGYICPR 345
Query: 310 CKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEV 350
C ++VC++PTDC +CGL +VS+PHLARSYHHLFP+ P+ V
Sbjct: 346 CLSKVCDIPTDCNVCGLVIVSAPHLARSYHHLFPVKPYQPV 386
>gi|389741483|gb|EIM82671.1| Ssl1-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 382
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 147/363 (40%), Positives = 227/363 (62%), Gaps = 35/363 (9%)
Query: 2 TNSERKRLNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFY 61
+ ++ +LN A+E+ AWE +Y RSW+A+QEDE G L
Sbjct: 30 VDGKKDKLNDRAKEQAY-----------AWEATYT--RSWDAVQEDEGGSLTGAVQELMA 76
Query: 62 HAQYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVR 121
+ RR L+A A I++ +IR+L +++DLS + + D RP+R + + FV
Sbjct: 77 KGRRRR------LLAPAAAIRRTIIRHLVLLLDLSASMMDRDLRPTRFDLSLEYAREFVT 130
Query: 122 EFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQ 179
E+FDQNPL Q+G+V ++ G+ + ++ G+P+ +KAL KL +G+ SLQNA+++ +
Sbjct: 131 EWFDQNPLGQVGVVGMRAGLGERVGEMSGNPQDVLKALSERHKLEPTGEPSLQNAIEMAR 190
Query: 180 GLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQ 239
+S +P++ RE+L+++ +L+T DPG+I +T+Q C + KIR S++ L+AEM IC+ LC
Sbjct: 191 SSMSHLPTHSSREILVIFGSLTTVDPGNIYDTLQSCIKDKIRISIVSLAAEMKICRELCD 250
Query: 240 DTGGSYSVALDESHFKELIMEHAPPP-----------PAIAEFAIANLIKMGFPQRAGEG 288
TGG + VA++E HFK+L+ E PPP P A A A+L+ MGFP R +
Sbjct: 251 KTGGQFGVAMNEGHFKDLLFELIPPPAQRAIARTTGGPGAANPA-ADLMMMGFPTRLPDT 309
Query: 289 SI-SICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPF 347
S+ S+C CH E++ G+ CPRC ++VC++PTDC +CGL +VSSPHLARSYHHLFP+ P+
Sbjct: 310 SLPSLCVCHAELR-SAGFLCPRCMSKVCDVPTDCDVCGLMIVSSPHLARSYHHLFPVKPY 368
Query: 348 DEV 350
V
Sbjct: 369 AAV 371
>gi|296817267|ref|XP_002848970.1| suppressor of stem-loop protein 1 [Arthroderma otae CBS 113480]
gi|238839423|gb|EEQ29085.1| suppressor of stem-loop protein 1 [Arthroderma otae CBS 113480]
Length = 484
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 160/411 (38%), Positives = 237/411 (57%), Gaps = 42/411 (10%)
Query: 26 GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGL 85
GG E WE + R+WE L E G + + + +R L+D T +Q+G+
Sbjct: 59 GGAE-WEVA----RTWETLVEGADGTITATVDGLLEADKRKRLLKD------TTPLQRGI 107
Query: 86 IRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 145
IR++ +V+DLS A AE D RP+R + + + FV EFF+QNP+SQ+G++ +KDGVA +
Sbjct: 108 IRHMILVLDLSFAMAEKDLRPTRYLLTLRYAQKFVLEFFEQNPISQLGIMGMKDGVAVQV 167
Query: 146 TDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTC 203
+++ G+P HI AL + G SLQNAL++ +G L P++G REV+I+ AL +
Sbjct: 168 SEMSGNPTEHILALHALRSEDPKGLPSLQNALEMARGSLYHTPTHGTREVIIILGALLSS 227
Query: 204 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELIM 259
DPGDI +TI K+R +IGL+A++ IC+ LC T SY VA+DE H +L++
Sbjct: 228 DPGDIRQTITSLVADKVRVGIIGLAADVAICRELCAKTNDGNDSSYGVAIDEKHLWDLLL 287
Query: 260 EHAPPPPAIAE-FAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELP 318
+ PP ++ ++ ++L+ MGFP R E S+C+CH + G GY C RC ++VC LP
Sbjct: 288 DVTTPPVTYSQRYSSSSLLMMGFPSRTVEPFPSLCACHSKPVRG-GYMCSRCGSKVCSLP 346
Query: 319 TDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRS--TCFGCQQSL--- 373
+C C L L+ S HLARSYHHLFP+ + EV P R+ +CF C
Sbjct: 347 AECPTCNLTLILSTHLARSYHHLFPLINWVEV-------PWKRASKSVSCFACGNVFPPV 399
Query: 374 -------LSSGNKPGLYVA----CPKCKKHFCLECDIYIHESLHNCPGCES 413
G+ G+ V+ C C HFC++CD++ HE +HNCPGC+S
Sbjct: 400 PPREKWDRQEGSVKGMSVSSRYECTVCHHHFCIDCDVFAHEIVHNCPGCQS 450
>gi|453087906|gb|EMF15947.1| TFIIH basal transcription factor complex, subunit SSL1
[Mycosphaerella populorum SO2202]
Length = 460
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 168/442 (38%), Positives = 243/442 (54%), Gaps = 44/442 (9%)
Query: 15 EEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPID-------NSAFYHAQYRR 67
E +ED+D +NG R+ A AL E G D N
Sbjct: 7 EYDEDDDLQVNGDGTGKGRTLASRPKARALARWEEGATGTGDLRQGADGNLLEVLGGIEE 66
Query: 68 RLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQN 127
+ + LV T +Q+G+IR+ +++DLS A E D RP+R+ + V AF+RE+F+QN
Sbjct: 67 AAKRKRLVKDTTPLQRGIIRHTILILDLSLAMMEKDLRPTRLLLTLTYVIAFIREYFEQN 126
Query: 128 PLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQI 185
P+SQ+G++ +++G+A ++D+ G+P HI A+ + G+ SLQNAL++ + L
Sbjct: 127 PISQLGILGMREGLAIRVSDMSGNPNDHINAIKALRSTDPKGNPSLQNALEMARAALYHT 186
Query: 186 PSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS- 244
PS+G REV I+ AL T DPGDI +TI+ C + KIR ++IGL+A+MFIC +C+ T
Sbjct: 187 PSHGTREVAIILGALHTSDPGDIHDTIKACIKDKIRVNIIGLAAQMFICAEICRKTNQGD 246
Query: 245 ---YSVALDESHFKELIMEHAPPPPAIAEFAIAN------LIKMGFPQRAGEGSISICSC 295
Y+VA+DE H++EL+M PP A A L+ MGFP R E ++C+C
Sbjct: 247 TNCYNVAVDEVHYRELLMSITTPPVVRASDVEAQKRNQAALLMMGFPSRIVEEKATLCAC 306
Query: 296 HKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCL 355
H + G GY C RCKA+VC LP C C L L+ S HLARSYHHLFP+ +DEV+
Sbjct: 307 HGNLTRG-GYLCSRCKAKVCNLPATCPTCELTLILSTHLARSYHHLFPLQNWDEVS---W 362
Query: 356 NDPRNRSRSTCFGCQQSLLS-SGNKPGL--------------------YVACPKCKKHFC 394
+ + CFGCQ + SG G+ C C++HFC
Sbjct: 363 KRAQQKRSVQCFGCQSPFPALSGGIDGVDGSANGHSRPKRAEGASESSRYECSTCQQHFC 422
Query: 395 LECDIYIHESLHNCPGCESLRH 416
++CD++ HE +HNCPGC+S H
Sbjct: 423 IDCDVFCHEVVHNCPGCQSNAH 444
>gi|46123249|ref|XP_386178.1| hypothetical protein FG06002.1 [Gibberella zeae PH-1]
Length = 469
Score = 288 bits (736), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 170/418 (40%), Positives = 238/418 (56%), Gaps = 53/418 (12%)
Query: 30 AWERSYADDRSWEA--LQEDESGFLRPIDNSAFYHAQYRRRL-RDRSLVATTARIQKGLI 86
AWE S R+WE ED+ G L + A+ R+RL RD T +Q+G+I
Sbjct: 45 AWEVS---KRTWETGLPDEDQDGVL----SINVLEAEKRKRLLRD------TTPLQRGII 91
Query: 87 RYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLT 146
R++ +V+D+S A E D P+R ++ AFVREFF+QNP+SQ+G++ ++DGVA ++
Sbjct: 92 RHMVLVLDMSFAMTEKDLLPTRYRLMLSYAVAFVREFFEQNPISQLGIIGMRDGVAVRVS 151
Query: 147 DLGGSPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCD 204
D+GG+P H+ L G G+ SLQNAL++ +G L PS+G REV I+Y AL + D
Sbjct: 152 DVGGNPAEHLDKLKGLESQDPQGNPSLQNALEMCRGALFHAPSHGTREVFIIYGALLSSD 211
Query: 205 PGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS----YSVALDESHFKELIME 260
PGDI ETI +IR S++GLSA + IC LC T Y++A+DE HF+EL +
Sbjct: 212 PGDIHETIGNLITDRIRVSIVGLSAHLAICADLCSRTNAGDESQYNIAMDEVHFRELFLA 271
Query: 261 HAPPPPA-IAEFAIANLIKMGFPQRA--GEGSISICSCHKEVKVGVGYTCPRCKARVCEL 317
PP + A+L+ MGFP R G+ S C+CH GY C RC ARVC +
Sbjct: 272 ATTPPVTRTVAQSTASLLMMGFPSRTLVPNGTTSYCACHNR-PCREGYLCTRCGARVCRI 330
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC-------- 369
P++C C L L+ S HLARSYHHLFP+ + EV P + + + CF C
Sbjct: 331 PSECPSCDLTLILSTHLARSYHHLFPLRNWIEV-PWA----KATTSAGCFSCLAPFPEPP 385
Query: 370 -----QQSLLSSG--------NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESL 414
+S SG ++ G Y AC C +HFC++CD++ HE +HNCPGC+SL
Sbjct: 386 KNKGHDKSKEDSGAPKTAKGVSESGRY-ACEVCGQHFCIDCDVFAHEVVHNCPGCQSL 442
>gi|281337668|gb|EFB13252.1| hypothetical protein PANDA_003972 [Ailuropoda melanoleuca]
Length = 364
Score = 287 bits (735), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 152/346 (43%), Positives = 219/346 (63%), Gaps = 24/346 (6%)
Query: 79 ARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVK 138
+++ G++R+LY+V+D SR + D +P+R+ K +E FV E+FDQNP+SQ+G++ K
Sbjct: 20 GQVRLGMMRHLYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQVGIIVTK 79
Query: 139 DGVANCLTDLGGSPESHIKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLIL 196
A LT+L G+P HI +L + C G+ SL N+L + L +P + REVLI+
Sbjct: 80 SKRAEKLTELSGNPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLII 139
Query: 197 YSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKE 256
+S+L+TCDP +I + I+ K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KE
Sbjct: 140 FSSLTTCDPSNIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKE 199
Query: 257 LIMEHAPPPPAIAEFAIANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GY 305
L+ H PPPA + +LI+MGFPQ + S S+ + G+ GY
Sbjct: 200 LLTHHVSPPPASSSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGY 258
Query: 306 TCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRST 365
CP+C+A+ CELP +C+ICGL LVS+PHLARSYHHLFP+ F E+ PL +
Sbjct: 259 FCPQCRAKYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-PL----EEHNGEKF 313
Query: 366 CFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
C+GCQ L +YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 314 CYGCQGEL----KDQHVYV-CAVCQTVFCVDCDVFVHDSLHCCPGC 354
>gi|327301499|ref|XP_003235442.1| RNA polymerase TFIIH complex subunit Ssl1 [Trichophyton rubrum CBS
118892]
gi|326462794|gb|EGD88247.1| RNA polymerase TFIIH complex subunit Ssl1 [Trichophyton rubrum CBS
118892]
Length = 489
Score = 287 bits (735), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 158/406 (38%), Positives = 236/406 (58%), Gaps = 41/406 (10%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE + R+WE L E G + + + +R LRD T +Q+G+IR++
Sbjct: 64 WEVA----RTWETLVEGADGTITATVDGLLEADKRKRLLRD------TTPLQRGIIRHMI 113
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+DLS A AE D RP+R + + + FV+EFF+QNP+SQ+G++ +KDG+A ++++ G
Sbjct: 114 LVLDLSFAMAEKDLRPTRYLLTLRYAQKFVQEFFEQNPISQLGIMGMKDGIAVQISEMSG 173
Query: 151 SPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P H+ AL + G SLQNAL++ +G L PS+G REV+I+ AL + DPGDI
Sbjct: 174 NPTEHMLALHALRAEDPKGLPSLQNALEMARGSLYHTPSHGTREVIIILGALLSSDPGDI 233
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELIMEHAPP 264
+TI K+R +IGL+A++ IC+ +C T SY VA+DE H +L+++ P
Sbjct: 234 HQTITSLVADKVRVGIIGLAADVAICREICAKTNDGNDSSYGVAIDEKHLWDLLLDVTTP 293
Query: 265 PPAIAE-FAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRI 323
P ++ ++ +L+ MGFP R E S+C+CH + G GY C RC ++VC LP +C
Sbjct: 294 PVTYSQRYSSNSLLMMGFPSRTVEPFPSLCACHSKPVRG-GYMCSRCGSKVCSLPAECPT 352
Query: 324 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNR-SRS-TCFGCQQSL-------- 373
C L L+ S HLARSYHHLFP+ + EV P R SRS +CF C
Sbjct: 353 CNLTLILSTHLARSYHHLFPLINWVEV-------PWKRASRSVSCFACGNPFPAVPPRDK 405
Query: 374 --LSSGNKPGLYVA----CPKCKKHFCLECDIYIHESLHNCPGCES 413
+ + G+ V+ C C HFC++CD++ HE +HNCPGC+S
Sbjct: 406 WDMRDRSIKGMSVSSRYECTVCHHHFCIDCDVFAHEVVHNCPGCQS 451
>gi|346326021|gb|EGX95617.1| TFIIH basal transcription factor complex, subunit SSL1 [Cordyceps
militaris CM01]
Length = 508
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 172/428 (40%), Positives = 237/428 (55%), Gaps = 61/428 (14%)
Query: 29 EAWERSYADDRSWEA--LQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLI 86
+AWE+S R+WE +E + G L + A+ RRRLR T +Q+G+I
Sbjct: 71 QAWEQS---KRTWETGLPEEGDDGTL----DLTTLEAEKRRRLRR-----DTTPLQRGII 118
Query: 87 RYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLT 146
R+L +V+D+S A A+ D P+R + + AFVREFF+QNP+SQ+G+V ++DGVA ++
Sbjct: 119 RHLVLVLDMSFAMADKDMLPTRHRLTLRYAAAFVREFFEQNPISQLGIVGMRDGVAVRVS 178
Query: 147 DLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQG---------LLSQIPSYGHREVLI 195
DLGG+P H++ L + G+ SLQNAL++ +G S PS+G REVLI
Sbjct: 179 DLGGNPAEHLERLKALESQDPQGNPSLQNALEMCRGCNANEFNVHTNSHAPSHGTREVLI 238
Query: 196 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS----YSVALDE 251
+Y AL + DPGDI +T+ +IR S++GLSA + IC LC T Y VA DE
Sbjct: 239 IYGALLSSDPGDIHDTLASLINDRIRVSIVGLSAHLSICAELCARTNAGDTSQYGVATDE 298
Query: 252 SHFKELIMEHAPPPPA-IAEFAIANLIKMGFPQR--AGEGSISICSCHKEVKVGVGYTCP 308
HF+EL + PP E + A+L+ MGFP R A G+ S C+CH G+ C
Sbjct: 299 VHFRELFLAATTPPVTRTKEQSTASLLMMGFPSRVLAPGGATSFCACHNR-PCREGFLCT 357
Query: 309 RCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFG 368
RC RVC LP +C C L L+ S HLARSYHHLFP+ + EV+ D RS CF
Sbjct: 358 RCGTRVCRLPAECPACALTLILSTHLARSYHHLFPLRNWVEVS---WADAVGRS-PACFA 413
Query: 369 CQ-----------------------QSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESL 405
CQ + + ++ G Y AC C HFC++CD+Y HE +
Sbjct: 414 CQCPFPAAAATGGDASAREEGQGKKRPTVKGVSESGRY-ACEVCGNHFCIDCDVYAHEVI 472
Query: 406 HNCPGCES 413
HNCPGC+S
Sbjct: 473 HNCPGCQS 480
>gi|326468925|gb|EGD92934.1| RNA polymerase TFIIH complex subunit Ssl1 [Trichophyton tonsurans
CBS 112818]
gi|326480095|gb|EGE04105.1| RNA polymerase TFIIH complex subunit Ssl1 [Trichophyton equinum CBS
127.97]
Length = 489
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 157/406 (38%), Positives = 236/406 (58%), Gaps = 41/406 (10%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE + R+WE L E G + + + +R L+D T +Q+G+IR++
Sbjct: 64 WEVA----RTWETLVEGADGTITATVDGLLEADKRKRLLKD------TTPLQRGIIRHMI 113
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+DLS A AE D RP+R + + + FV+EFF+QNP+SQ+G++ +KDG+A ++++ G
Sbjct: 114 LVLDLSFAMAEKDLRPTRYLLTLRYAQKFVQEFFEQNPISQLGIMGMKDGIAVQISEMSG 173
Query: 151 SPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P H+ AL + G SLQNAL++ +G L PS+G REV+I+ AL + DPGDI
Sbjct: 174 NPTEHMLALHALRAEDPKGLPSLQNALEMARGSLYHTPSHGTREVIIILGALLSSDPGDI 233
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELIMEHAPP 264
+TI K+R +IGL+A++ IC+ +C T SY VA+DE H +L+++ P
Sbjct: 234 HQTITSLVADKVRVGIIGLAADVAICREICAKTNDGNDSSYGVAMDEKHLWDLLLDVTTP 293
Query: 265 PPAIAE-FAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRI 323
P ++ ++ +L+ MGFP R E S+C+CH + G GY C RC ++VC LP +C
Sbjct: 294 PVTYSQRYSSNSLLMMGFPSRTVEPFPSLCACHSKPVRG-GYMCSRCGSKVCSLPAECPT 352
Query: 324 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNR-SRS-TCFGCQQSL-------- 373
C L L+ S HLARSYHHLFP+ + EV P R SRS +CF C
Sbjct: 353 CNLTLILSTHLARSYHHLFPLINWVEV-------PWKRASRSVSCFACGNPFPAVPPRDT 405
Query: 374 --LSSGNKPGLYVA----CPKCKKHFCLECDIYIHESLHNCPGCES 413
+ + G+ V+ C C HFC++CD++ HE +HNCPGC+S
Sbjct: 406 WDMRDRSIKGMSVSRRYECTVCHHHFCIDCDVFAHEVVHNCPGCQS 451
>gi|302506370|ref|XP_003015142.1| hypothetical protein ARB_06903 [Arthroderma benhamiae CBS 112371]
gi|291178713|gb|EFE34502.1| hypothetical protein ARB_06903 [Arthroderma benhamiae CBS 112371]
Length = 490
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 157/406 (38%), Positives = 235/406 (57%), Gaps = 41/406 (10%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE + R+WE L E G + + + +R L+D T +Q+G+IR++
Sbjct: 64 WEVA----RTWETLVEGADGTITATVDGLLEADKRKRLLKD------TTPLQRGIIRHMI 113
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+DLS A AE D RP+R + + + FV+EFF+QNP+SQ+G+ +KDG+A ++++ G
Sbjct: 114 LVLDLSFAMAEKDLRPTRYLLTLRYAQKFVQEFFEQNPISQLGITGMKDGIAVQISEMSG 173
Query: 151 SPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P H+ AL + G SLQNAL++ +G L PS+G REV+I+ AL + DPGDI
Sbjct: 174 NPTEHMLALHALRAEDPKGLPSLQNALEMARGSLYHTPSHGTREVIIILGALLSSDPGDI 233
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELIMEHAPP 264
+TI K+R +IGL+A++ IC+ +C T SY VA+DE H +L+++ P
Sbjct: 234 HQTITSLVADKVRVGIIGLAADVAICREICAKTNDGNDSSYGVAIDEKHLWDLLLDVTTP 293
Query: 265 PPAIAE-FAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRI 323
P ++ ++ +L+ MGFP R E S+C+CH + G GY C RC ++VC LP +C
Sbjct: 294 PVTYSQRYSSNSLLMMGFPSRTVEPFPSLCACHSKPVRG-GYMCSRCGSKVCSLPAECPT 352
Query: 324 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNR-SRS-TCFGCQQSL-------- 373
C L L+ S HLARSYHHLFP+ + EV P R SRS +CF C
Sbjct: 353 CNLTLILSTHLARSYHHLFPLINWVEV-------PWKRASRSVSCFACGNPFPAVPPRDK 405
Query: 374 --LSSGNKPGLYVA----CPKCKKHFCLECDIYIHESLHNCPGCES 413
+ + G+ V+ C C HFC++CD++ HE +HNCPGC+S
Sbjct: 406 WDMRDRSIKGMSVSSRYECTVCHHHFCIDCDVFAHEVVHNCPGCQS 451
>gi|406863243|gb|EKD16291.1| RNA polymerase TFIIH complex subunit Ssl1 [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 524
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 159/410 (38%), Positives = 234/410 (57%), Gaps = 40/410 (9%)
Query: 27 GLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLI 86
G WE RSW+ + E G L + +R LRD T +Q+G+I
Sbjct: 110 GRAKWEDI---QRSWDTVVEGADGSLNSTVEGLRDAGKRKRLLRD------TTPVQRGII 160
Query: 87 RYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLT 146
R+ +++DLS A E D RP+R + + FV EFF+QNP+SQ+G++ ++DG+A ++
Sbjct: 161 RHFILIMDLSFAMVEKDLRPTRYLLTLRFASEFVTEFFEQNPISQLGVLGMRDGIAIRVS 220
Query: 147 DLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCD 204
++GG+P HI+ + + L G+ SLQNAL++ + +L P++G REVLI+ AL T D
Sbjct: 221 EMGGNPTEHIENIKKLRDLQGQGNPSLQNALEMARAILHYAPAHGTREVLIISGALLTSD 280
Query: 205 PGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELIME 260
PGDI ET++ +IR SV+GL+A++ I +C T G+Y VAL+E HF+EL+M
Sbjct: 281 PGDIHETVRSLVTDRIRVSVVGLAAQVKILSVICSKTNAGNEGNYHVALNEQHFRELVMA 340
Query: 261 HAPPPPAIAEF-AIANLIKMGFPQR-AGEG-SISICSCHKEVKVGVGYTCPRCKARVCEL 317
PP + + L+ MGFP R +G G ++S C+CH ++ G GY C RC ++VC L
Sbjct: 341 LTTPPVTRTKTQSQPTLLMMGFPSRISGVGKAMSYCACHSKLVRG-GYLCSRCDSKVCSL 399
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRST--CFGC------ 369
P DC +CGL LV S HLARSYHHLFP+ + EV P +++ + CF C
Sbjct: 400 PADCPVCGLTLVLSTHLARSYHHLFPLKNWVEV-------PWSQAGKSKACFACLTAFPE 452
Query: 370 ------QQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 413
+ G C C HFC++CD++ HE +HNCPGC+S
Sbjct: 453 VPSHLEKNGAEREGTSESGRYTCEDCGYHFCIDCDVHAHEVVHNCPGCQS 502
>gi|388856633|emb|CCF49750.1| probable SSL1-TFIIH subunit (transcription initiation factor),
factor B [Ustilago hordei]
Length = 506
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 156/426 (36%), Positives = 233/426 (54%), Gaps = 54/426 (12%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYL 89
+WE +Y RSW+A+ ED+SG L ++ RR L+D A +Q+G+IR+L
Sbjct: 89 SWEETY--KRSWDAVAEDDSGSLESAVRQMIEGSKRRRTLKD------VAPVQRGIIRHL 140
Query: 90 YIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
++IDLS + E D RP+R V + + FV E+FDQNP+ Q+ ++ ++G+A L +G
Sbjct: 141 VLLIDLSASMLEKDMRPNRFDVTLQYAKEFVMEYFDQNPIGQLSVIGTREGIAERLAMMG 200
Query: 150 GSPESHIKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 207
G+ H +L K L G+ SLQNAL++ + L +P+ RE+L ++ +L+TCDPG+
Sbjct: 201 GNTVDHTASLSNKRRLEPRGEPSLQNALEMARSSLVHLPASNSREILAIFGSLTTCDPGN 260
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 267
I +TI + IR S++ L+AE+ + K +C TGG++SVAL+E HF + + EH PPP
Sbjct: 261 IHDTINTLVKDNIRVSIVHLAAEVKVFKDVCTRTGGTFSVALNEGHFHDSLFEHVPPPAV 320
Query: 268 ---------------------IAEFAIAN---LIKMGFPQR-AGEGSISICSCHKEVKVG 302
E +AN L++M FP R + ++C+CH + G
Sbjct: 321 EGPRRPKRRIIAASGNGAATTEEEEEVANGVDLLQMAFPLRLPAHAAPTLCACHSRSR-G 379
Query: 303 VGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRS 362
GY CPRC +VC++PTDC +CG+ +V S HLARSYHHLFP+ P +V P +
Sbjct: 380 SGYLCPRCGVKVCDVPTDCPVCGITIVMSTHLARSYHHLFPV-PNWKVVPWSALLSAAKV 438
Query: 363 RSTCFGCQ-----------------QSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESL 405
C C ++L +G C +C FCLECD ++HE L
Sbjct: 439 EPACLSCNLLFPTQEQGAARSAAANKALEEAGLSESSRYRCGRCSHDFCLECDAFVHEQL 498
Query: 406 HNCPGC 411
H CPGC
Sbjct: 499 HVCPGC 504
>gi|343426526|emb|CBQ70055.1| probable SSL1-TFIIH subunit (transcription initiation factor),
factor B [Sporisorium reilianum SRZ2]
Length = 511
Score = 284 bits (727), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 155/426 (36%), Positives = 233/426 (54%), Gaps = 56/426 (13%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYL 89
+WE +Y RSW+A+ ED+SG L S ++ RR L+D A +Q+G+IR+L
Sbjct: 97 SWEATY--KRSWDAVAEDDSGSLESAVRSMIEGSKRRRVLKD------VAPVQRGIIRHL 148
Query: 90 YIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
++IDLS + E D RP+R V + FV E+FDQNP+ Q+ ++ + G+A L +G
Sbjct: 149 VLLIDLSASMLEKDMRPNRFDVTLQYAREFVGEYFDQNPIGQLSIIGTRQGIAERLAMMG 208
Query: 150 GSPESHIKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 207
G+ H +L K L G+ SLQNAL++ + L +P+ RE+L ++ +L+TCDPG+
Sbjct: 209 GNTVDHTASLSNKRRLEPRGEPSLQNALEMARSSLVHLPASNSREILAIFGSLTTCDPGN 268
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPP- 266
I +TI + IR S++ L+AE+ + K +C TGG++SVAL+E HF + + E PPP
Sbjct: 269 IHDTIGTLVKDNIRVSIVHLAAEVKVFKDVCTRTGGTFSVALNEGHFHDSLFELVPPPAV 328
Query: 267 -----------AIAEFAIAN------------LIKMGFPQR-AGEGSISICSCHKEVKVG 302
A A A+ L++M FP R + ++C+CH + G
Sbjct: 329 EGPRRTKRRSGAATNGAAADGEDDEEVHNGVDLLQMAFPLRLPAHAAPTLCACHSRSR-G 387
Query: 303 VGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRS 362
GY CPRC +VC++PTDC +CG+ +V S HLARSYHHLFP+ + V ++ S
Sbjct: 388 SGYVCPRCGVKVCDVPTDCPVCGITIVMSTHLARSYHHLFPVPNWKAVPWTAVS---ATS 444
Query: 363 RSTCFGC-----------------QQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESL 405
+ C C ++L +G C +C + FCLECD ++HE L
Sbjct: 445 DAACLSCNLPFPTLQDGEASSAAANKALEDAGLSASSRYRCTRCSRDFCLECDAFVHEQL 504
Query: 406 HNCPGC 411
H CPGC
Sbjct: 505 HVCPGC 510
>gi|346979033|gb|EGY22485.1| suppressor of stem-loop protein [Verticillium dahliae VdLs.17]
Length = 461
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 160/410 (39%), Positives = 237/410 (57%), Gaps = 49/410 (11%)
Query: 39 RSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRA 98
RSWE ++E G L D A+ RRRL + T +Q+G+IR+L +V+D+S A
Sbjct: 45 RSWETVEEGADGSL---DVEGRAEAEKRRRL-----LRDTTPLQRGIIRHLVLVLDMSFA 96
Query: 99 AAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKA 158
AE D P+R+ + + FV+E+F+QNP+SQ+G+V ++DGVA ++++GG+P H++A
Sbjct: 97 MAEKDLLPTRLRLTWRLAREFVKEYFEQNPISQMGIVGMRDGVAVRVSEMGGNPVEHVEA 156
Query: 159 L--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCK 216
+ ++ G SLQNAL++ +G L PS+G REVL++Y AL + DPGDI +TI
Sbjct: 157 INKWAEIDPQGSPSLQNALEMCRGALFHAPSHGTREVLVVYGALLSSDPGDIHDTIANLL 216
Query: 217 ESKIRCSVIGLSAEMFICKHLCQDTGGS----YSVALDESHFKELIMEHAPPPPAIAEF- 271
+IR S++GL+A++ IC+ LC+ T Y++ALDE H++EL++ PP +
Sbjct: 217 ADRIRVSIVGLAAQVAICEELCRKTNAGDATQYNIALDEMHYRELLLRTTTPPVTRTQAQ 276
Query: 272 AIANLIKMGFPQR--AGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLV 329
+ A+L+ MGFP R A + + C+CH V GY C RC RVC LP +C CGL L+
Sbjct: 277 STASLLMMGFPSRTLAPADTTAYCACHN-TPVREGYLCTRCGTRVCRLPAECPACGLTLI 335
Query: 330 SSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC--------------QQSLLS 375
S HLARSYHHLFP+ + EV P R + C+ C + +
Sbjct: 336 LSTHLARSYHHLFPLRNWVEV-PWA----RAAASRACYACLAPFPDPPPQRRGHRTNGTD 390
Query: 376 SGNKPGLYV------------ACPKCKKHFCLECDIYIHESLHNCPGCES 413
G+K V AC C HFC++CD++ HE +HNCPGC+S
Sbjct: 391 GGDKEAAPVPKQKGVSESSRYACQVCGNHFCIDCDVFAHEVIHNCPGCQS 440
>gi|410948792|ref|XP_003981114.1| PREDICTED: general transcription factor IIH subunit 2 [Felis catus]
Length = 366
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 159/394 (40%), Positives = 226/394 (57%), Gaps = 61/394 (15%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ +R +++ G++
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGML---- 58
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 59 -------------------------LEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 93
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P HI +L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 94 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 153
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
+ I+ K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA
Sbjct: 154 YDLIKTLKATKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPA- 212
Query: 269 AEFAIANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCEL 317
+ + +LI+MGFPQ + S S+ + G+ GY CP+C+A+ CEL
Sbjct: 213 SSGSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCEL 272
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P +C+ICGL LVS+PHLARSYHHLFP+ F E+ PL + N R C+GCQ L
Sbjct: 273 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-PL---EEHNGER-FCYGCQGEL---- 323
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
+YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 324 KDQHVYV-CAVCQNVFCVDCDVFVHDSLHCCPGC 356
>gi|302680178|ref|XP_003029771.1| hypothetical protein SCHCODRAFT_82959 [Schizophyllum commune H4-8]
gi|300103461|gb|EFI94868.1| hypothetical protein SCHCODRAFT_82959 [Schizophyllum commune H4-8]
Length = 400
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 139/339 (41%), Positives = 216/339 (63%), Gaps = 27/339 (7%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYL 89
WE SY RSW+ +QEDESG L+ A+ +R L A + I++ +IR+L
Sbjct: 51 TWEASYT--RSWDTVQEDESGSLQGAVEDWVVRARRKR------LQAPSTAIRRTIIRHL 102
Query: 90 YIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
+++DLS A + D RP+R ++ + FV E+FDQNPL QIG+V ++ G+ + ++
Sbjct: 103 VLLLDLSSAMLDRDMRPTRFDLMLQYAREFVVEWFDQNPLGQIGVVGMRSGIGERICEMT 162
Query: 150 GSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 207
G+P+ +K++ +L G+ SLQNA+++ + +S +P++ RE+L+++ +L+TCDPGD
Sbjct: 163 GNPQDVLKSISERHRLEPQGEPSLQNAIEMARSSMSHLPTHSSREILLIFGSLTTCDPGD 222
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPP-- 265
I +T+ C KIR SV+ L+AEM IC+ C TGG + VAL+E HF++++ E PPP
Sbjct: 223 IHDTLDTCVRQKIRVSVVALAAEMKICREFCDKTGGQFGVALNEGHFRDILFELVPPPAQ 282
Query: 266 ----------PAIAEFA---IANLIKMGFPQRAGEGS-ISICSCHKEVKVGVGYTCPRCK 311
P A A A+L+ MGFP R + + S+C+CH E++ G+ CPRC+
Sbjct: 283 RALGGAGMGAPGKATAASGPSADLMMMGFPTRLPDTTPPSLCACHGELR-SAGFLCPRCQ 341
Query: 312 ARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEV 350
++VC++PTDC +CGL +VSSPHLARSYHHLFP+ P+ +
Sbjct: 342 SKVCDVPTDCDVCGLMIVSSPHLARSYHHLFPVRPYAAI 380
>gi|240277005|gb|EER40515.1| transcription factor TFIIH complex subunit Ssl1 [Ajellomyces
capsulatus H143]
gi|325094945|gb|EGC48255.1| transcription factor TFIIH [Ajellomyces capsulatus H88]
Length = 505
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 172/433 (39%), Positives = 240/433 (55%), Gaps = 60/433 (13%)
Query: 26 GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGL 85
GG E WE S R+WE L E G + + +R LRD T +Q+G+
Sbjct: 68 GGAE-WEVS----RTWETLVESADGTISATVEDLLGAGKRKRLLRD------TTPLQRGI 116
Query: 86 IRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 145
IR+L +V+DLS A AE D RP+R + + + FV EFF+QNP+SQ+G++ ++DG+A +
Sbjct: 117 IRHLILVLDLSSAMAEKDLRPTRYLLTLRYAQEFVLEFFEQNPISQLGVLGMRDGLAVRI 176
Query: 146 TDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTC 203
+D+ G+P HI A+ + G SLQNAL++ +G L P++G REVLI++ AL +
Sbjct: 177 SDMSGNPTDHIMAIQALRPKDPKGMPSLQNALEMARGTLFHTPTHGTREVLIIFGALLSS 236
Query: 204 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS----YSVALDESHFKELIM 259
DPGDI +TI KIR S+IGL+A++ IC+ LC T Y +AL+E HF+EL M
Sbjct: 237 DPGDIHQTITALVADKIRISIIGLAAQVAICRDLCGRTNNGDDTVYGIALNEQHFRELFM 296
Query: 260 E-HAPPPPAIAEFAI------------------ANLIKMGF--PQRAGEGSISICSCHKE 298
APPP +A + ++L+ MGF + S+C+CH +
Sbjct: 297 NVTAPPPTTVAPTSTPTASSANGPKTTTTNTTTSSLLMMGFPSLTLTTTPTPSLCACHSK 356
Query: 299 VKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDP 358
GY C RC A+VC LP+ C CGL L+ S HLARSYHHLFP+ + EV+
Sbjct: 357 PSRA-GYLCCRCNAKVCTLPSSCPCCGLTLILSTHLARSYHHLFPLMNWVEVS--WRRAA 413
Query: 359 RNRSRSTCFGC-----QQSLLSSGN-----KPGLYVA--------CPKCKKHFCLECDIY 400
R RS S CF C + L SG K L V CP C+ HFC++CD++
Sbjct: 414 RKRSAS-CFACGVGFPRMPKLVSGEPEETAKAALGVGVSVSGRYECPVCECHFCIDCDVF 472
Query: 401 IHESLHNCPGCES 413
HE +HNCPGC+S
Sbjct: 473 AHEVVHNCPGCQS 485
>gi|226295046|gb|EEH50466.1| suppressor of stem-loop protein [Paracoccidioides brasiliensis
Pb18]
Length = 518
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 165/460 (35%), Positives = 229/460 (49%), Gaps = 66/460 (14%)
Query: 6 RKRLNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQY 65
R +G A ++ G WE S R+WE L E G +R +
Sbjct: 34 RPSASGRAARSKDARRRKKGRGGAEWEVS----RTWETLVEGADGTIRATVEGLLEAGKR 89
Query: 66 RRRLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFD 125
RR LRD T +Q+G+IR+L +++DLS A +E D RP+R + + + FVREFFD
Sbjct: 90 RRVLRD------TTPLQRGIIRHLILILDLSSAMSEKDLRPTRYLLTLRYAQDFVREFFD 143
Query: 126 QNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLG--CSGDSSLQNALDLVQGLLS 183
QNP+SQ+G+V ++DG+A ++D+ G+P HI A+ G G SLQNAL++ +G L
Sbjct: 144 QNPISQLGVVGMRDGLAVRISDMSGNPTEHILAIQGLRAKDPKGMPSLQNALEMARGALF 203
Query: 184 QIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGG 243
PS+G REVLI+Y AL + DPGDI +TI KI V+GL+A++ IC+ L T
Sbjct: 204 HTPSHGTREVLIIYGALLSSDPGDIHKTITSLITDKIHVYVLGLAAQVSICQELVTRTNN 263
Query: 244 ----SYSVALDESHFKELIMEHAPPPPAIAEFAI---------------ANLIKMGFPQR 284
Y+VA++E HF+EL++ PP L+ MGFP R
Sbjct: 264 GDDSGYNVAMNEQHFRELVLNVTTPPATTLASHTAAAAANGTGTNPSTDGTLLPMGFPNR 323
Query: 285 AGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPI 344
++C+CH GY CPRC +VC LP C C L L+ S HLARSYHHLFP+
Sbjct: 324 HLTPHPTLCACHSTPSRS-GYLCPRCCTKVCTLPASCPSCNLTLILSTHLARSYHHLFPL 382
Query: 345 APFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVA------------------- 385
+ EV+ R CF C PG +V
Sbjct: 383 MNWVEVSWRKAARAEAEGRVGCFACGVGF---AGVPGEFVGAEGDEEREEEEDGKGEGKG 439
Query: 386 ------------CPKCKKHFCLECDIYIHESLHNCPGCES 413
C C+ HFC++CD++ HE +HNCPGC+S
Sbjct: 440 ASRGISVSGRYECLVCRCHFCIDCDVFAHEVVHNCPGCQS 479
>gi|322700310|gb|EFY92066.1| TFIIH basal transcription factor complex p47 subunit , putative
[Metarhizium acridum CQMa 102]
Length = 457
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 168/425 (39%), Positives = 236/425 (55%), Gaps = 68/425 (16%)
Query: 27 GLEAWERSYADDRSWEA--LQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKG 84
G +AWE+S RSWE +ED+ G L N A+ RRRL + T +Q+G
Sbjct: 46 GEQAWEKS---KRSWETNLPEEDQDGIL----NLTVLEAEKRRRL-----MRDTTPLQRG 93
Query: 85 LIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 144
+IR++ +V+D+S A AE D P+R + AFVRE+F+QNP+SQ+G++ ++DGVA
Sbjct: 94 IIRHMMLVLDMSFAMAEKDLLPTRYRLTISYALAFVREYFEQNPISQLGIIGMRDGVAVR 153
Query: 145 LTDLGGSPESHIKALMGKLGC--SGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALST 202
++DL G+P HI+ L G G+ SLQNAL++ +G L PS+G REVLI+Y AL +
Sbjct: 154 ISDLSGNPAEHIERLKAVEGQDPQGNPSLQNALEMCRGALFHTPSHGTREVLIIYGALLS 213
Query: 203 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGG----SYSVALDESHFKELI 258
DPGDI ETI KIR S++GLSA++ IC LC T Y++A+DE HF++L
Sbjct: 214 SDPGDIHETIANLVTDKIRVSIVGLSAQVAICADLCSRTNAGDDSQYNIAMDEVHFRDLF 273
Query: 259 MEHAPPPPA-IAEFAIANLIKMGFPQR--AGEGSISICSCHKEVKVGVGYTCPRCKARVC 315
+ PP AE + A+L+ MGFP R A G+IS C+CH + + GY
Sbjct: 274 LASTTPPVTRTAEQSTASLLMMGFPSRTLAPGGAISFCACHSK-PLREGYNS-------- 324
Query: 316 ELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRST-CFGC----- 369
CGL L+ S HLARSYHHLFP+ + EV+ +RST CF C
Sbjct: 325 --------CGLTLILSTHLARSYHHLFPLRNWVEVSWT------EATRSTACFSCLCPFP 370
Query: 370 ----------------QQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 413
+ L + G AC C HFC++CD++ H+ +HNCPGC+S
Sbjct: 371 EPPKDKVDGVEKSKDDTRHLKAKGVSESGRYACEVCGNHFCIDCDVFAHQVIHNCPGCQS 430
Query: 414 LRHSN 418
+ H +
Sbjct: 431 IVHHD 435
>gi|407917809|gb|EKG11111.1| von Willebrand factor type A [Macrophomina phaseolina MS6]
Length = 481
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 162/426 (38%), Positives = 233/426 (54%), Gaps = 52/426 (12%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE+ D AL+E G L P D A+ R+RLR T Q+G+IR++
Sbjct: 42 WEQGVQADA--HALKEGADGKLLP-DEEDNPEAKKRKRLRQ-----DTKPFQRGIIRHVV 93
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D S A + DF+P+R A V K + +VREFF+QNP+SQ+ ++T+ DG+ N +++L G
Sbjct: 94 LVLDQSEAMLDKDFKPTRYAAVLKYAQEYVREFFEQNPISQLSVMTMYDGLCNRVSELSG 153
Query: 151 SPESHIKALMGKLGC--------SGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALST 202
+P HI L G SLQNAL+ + L PS+G REV+I+ AL +
Sbjct: 154 NPNDHISPLQRMRDTRNPNYQDPRGSPSLQNALEQARAALYHTPSHGTREVIIILGALLS 213
Query: 203 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGG----SYSVALDESHFKELI 258
DPGDI +TI C ++ +R ++IG+ + IC+ +C T G +Y VA+D+ HF++L+
Sbjct: 214 LDPGDIFKTIANCVKNNVRVNIIGMGGRLKICQEICSRTNGGDESAYVVAVDQLHFRDLL 273
Query: 259 MEHAPPP-----PAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKAR 313
+ PP A A A+L+KMGFP R E + +IC+CH + G GY C +C+A+
Sbjct: 274 LATTTPPVIRQTTAQAAANPASLLKMGFPSRVEESAPTICACHGTLTRG-GYLCSQCQAK 332
Query: 314 VCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVT--------------------PL 353
VC LPT C C L L+ S HLARSYHHLFP+ + EVT PL
Sbjct: 333 VCSLPTTCPSCNLTLILSTHLARSYHHLFPLKNWREVTWERARQVGSTECKSCLTPFPPL 392
Query: 354 CLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVA------CPKCKKHFCLECDIYIHESLHN 407
+ +T G Q + N G+ + C C+ HFC++CD+Y HE +HN
Sbjct: 393 PARSAAAKKAATANGEQHGAPGTKNTEGVGASESSRYECEDCRNHFCVDCDVYCHEIVHN 452
Query: 408 CPGCES 413
CPGC S
Sbjct: 453 CPGCLS 458
>gi|219521045|gb|AAI71919.1| GTF2H2C protein [Homo sapiens]
Length = 338
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 153/339 (45%), Positives = 215/339 (63%), Gaps = 24/339 (7%)
Query: 86 IRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 145
+R+LY+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A L
Sbjct: 1 MRHLYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKL 60
Query: 146 TDLGGSPESHIKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTC 203
T+L G+P HI +L + C G+ SL N+L + L +P + REVLI++S+L+TC
Sbjct: 61 TELSGNPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTC 120
Query: 204 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAP 263
DP +I + I+ K +KIR SV GLSAE+ +C L ++TGG+Y V LDESH+KEL+ H
Sbjct: 121 DPSNIYDLIKTLKAAKIRVSVTGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVS 180
Query: 264 PPPAIAEFAIANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKA 312
PPPA + +LI+MGFPQ + S S+ + G+ GY CP+C+A
Sbjct: 181 PPPASSSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRA 239
Query: 313 RVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQS 372
+ CELP +C+ICGL LVS+PHLARSYHHLFP+ F E+ PL + N R C+GCQ
Sbjct: 240 KYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-PL---EEYNGER-FCYGCQGE 294
Query: 373 LLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
L +YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 295 L----KDQHVYV-CAVCQNVFCVDCDVFVHDSLHCCPGC 328
>gi|341877728|gb|EGT33663.1| hypothetical protein CAEBREN_16370 [Caenorhabditis brenneri]
Length = 376
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 164/397 (41%), Positives = 228/397 (57%), Gaps = 27/397 (6%)
Query: 21 DDNLNGGLEAWERSYADDRSW-EALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTA 79
DD+ G WE YA+ + E L EDE G + + A Y A +R+ R L
Sbjct: 2 DDDEQKGY-TWEAGYAEGLNINEVLVEDEGGSIE--KSIAKYVADSKRKAR---LEKRPE 55
Query: 80 RIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKD 139
+I+ G++R++ IVID SR PSR VV K +++F+ FF+QNP++QIGL+T KD
Sbjct: 56 KIRLGIMRHIMIVIDCSRFMTNKAMPPSRFVVVMKALQSFLERFFEQNPIAQIGLITCKD 115
Query: 140 GVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILY 197
A LT + G+ +AL M + C GD SLQNAL L L +P + REVLI+
Sbjct: 116 RKAERLTMMTGNIRVLKEALNSMSEAFCGGDFSLQNALQLACANLKGMPGHVSREVLIVM 175
Query: 198 SALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKEL 257
+ALS+ DPG+I TI+ K IRCS IGLSAEMFICK + + T G YSVALD H + L
Sbjct: 176 AALSSIDPGNIFSTIETMKRMNIRCSAIGLSAEMFICKEMAKATKGEYSVALDPDHLQLL 235
Query: 258 IMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVK--VGVGYTCPRCKARVC 315
+H PP + A+ + N I +GFP + S C CH + K G+ C +C AR C
Sbjct: 236 FSKHTLPPSS-AKSSECNAIHVGFPHHELIKTRSFCVCHPDSKPISSRGFICTQCGARHC 294
Query: 316 ELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLS 375
+P +C +C L LV++P LAR++ HL P+A F ++ + +R +C+ C+ L S
Sbjct: 295 SIPAECPVCKLTLVAAPQLARAFRHLQPLAAFQQI---------DVTRGSCYACETRLTS 345
Query: 376 SGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCE 412
G + C KC+ FCL+CD +HESLH CPGC+
Sbjct: 346 EGFR------CEKCRLVFCLDCDTLLHESLHVCPGCK 376
>gi|324518504|gb|ADY47122.1| General transcription factor IIH subunit 2, partial [Ascaris suum]
Length = 386
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 154/401 (38%), Positives = 222/401 (55%), Gaps = 29/401 (7%)
Query: 19 DEDDNLNGGLEAWERSYADDRSW-EALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVAT 77
+EDD G WE +YA+ + E L+EDESG + + A+ +RRL DR
Sbjct: 6 NEDDEQKG--YTWEIAYAEGLNIREVLEEDESGSVEKSVAKLIFEAKRKRRLTDRP---- 59
Query: 78 TARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTV 137
ARI+ G++RY+YI+ID S A E P+R+ V K + F+ +F +QNP+SQ+G++
Sbjct: 60 -ARIRLGIMRYVYIIIDCSLAMTEKTLLPTRLNVTLKVLNQFLEKFSEQNPISQVGIIIC 118
Query: 138 KDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLI 195
+D A L L G+ + +AL + + C G+ SLQN L + L P + RE++
Sbjct: 119 RDKRAERLIQLTGTIRAVKEALSTINEASCHGEFSLQNGLLVALRSLQHFPGHASREIIA 178
Query: 196 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFK 255
+ ++LSTCDP +I T + K + +RCSVIGLSAE+F+ K LC T G Y V LD HF
Sbjct: 179 IVASLSTCDPSNIFGTFEVLKRNNVRCSVIGLSAEVFVYKKLCSTTSGRYDVILDGDHF- 237
Query: 256 ELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKV---GVGYTCPRCKA 312
ELI+ PP + +++MGFP + C CH+ G G+ CP+C A
Sbjct: 238 ELILNEYTNPPVTKRNVESCVVRMGFPSHQIIQKPAFCLCHQSENRPPGGRGFLCPQCGA 297
Query: 313 RVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQS 372
R C LP +CR+C L L+S+P LARS+HHL P+ F EV + + CFGC +
Sbjct: 298 RYCSLPVECRVCKLMLISAPQLARSFHHLLPLPAFKEV---------DTTSGICFGCAKP 348
Query: 373 LLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 413
L AC C ++C++CD+ +HESL CP C S
Sbjct: 349 LEQKS------FACKSCDANYCIDCDLLLHESLQLCPACPS 383
>gi|322708259|gb|EFY99836.1| TFIIH basal transcription factor complex p47 subunit , putative
[Metarhizium anisopliae ARSEF 23]
Length = 456
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 170/426 (39%), Positives = 236/426 (55%), Gaps = 70/426 (16%)
Query: 27 GLEAWERSYADDRSWEA--LQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKG 84
G +AWE+S RSWE +ED+ G L N A+ RRRL + T +Q+G
Sbjct: 45 GEQAWEKS---KRSWETNLPEEDQDGIL----NLTVLEAEKRRRL-----MRDTTPLQRG 92
Query: 85 LIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 144
+IR++ +V+D+S A AE D P+R + AFVREFF+QNP+SQ+G++ ++DGVA
Sbjct: 93 IIRHMMLVLDMSFAMAEKDLLPTRYRLTISYALAFVREFFEQNPISQLGIIGMRDGVAVR 152
Query: 145 LTDLGGSPESHIKALMGKLGC--SGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALST 202
++DLGG+P HI+ L G G+ SLQNAL++ +G L PS+G REVLI+Y AL +
Sbjct: 153 ISDLGGNPAEHIERLKAVEGQDPQGNPSLQNALEMCRGALFHTPSHGTREVLIIYGALLS 212
Query: 203 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGG----SYSVALDESHFKELI 258
DPGDI ETI KIR S++GLSA++ IC LC T Y++A+DE HF++L
Sbjct: 213 SDPGDIHETISNLIADKIRVSIVGLSAQVAICADLCSRTNAGDDSQYNIAMDEVHFRDLF 272
Query: 259 MEHAPPPPA-IAEFAIANLIKMGFPQR--AGEGSISICSCHKEVKVGVGYTCPRCKARVC 315
+ PP AE A+L+ MGFP R A G+IS C+CH + + GY
Sbjct: 273 LAGTTPPVTRTAEQNTASLLMMGFPSRTLAPGGAISFCACHSK-PLREGYNS-------- 323
Query: 316 ELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRST-CFGC----- 369
CGL L+ S HLARSYHHLFP+ + EV+ +RST CF C
Sbjct: 324 --------CGLTLILSTHLARSYHHLFPLRNWVEVSWA------EATRSTVCFSCLCPFP 369
Query: 370 -----------------QQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCE 412
+ ++ G Y AC C HFC++CD++ H+ +HNCPGC+
Sbjct: 370 EPPKDKIDGVEKSKDDTRHPKAKGVSESGRY-ACEVCGNHFCIDCDVFAHQVIHNCPGCQ 428
Query: 413 SLRHSN 418
S H +
Sbjct: 429 STVHHD 434
>gi|154276968|ref|XP_001539329.1| suppressor of stem-loop protein 1 [Ajellomyces capsulatus NAm1]
gi|150414402|gb|EDN09767.1| suppressor of stem-loop protein 1 [Ajellomyces capsulatus NAm1]
Length = 506
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 171/433 (39%), Positives = 239/433 (55%), Gaps = 60/433 (13%)
Query: 26 GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGL 85
GG E WE S R+WE L E G + + +R LRD T +Q+G+
Sbjct: 69 GGAE-WEVS----RTWETLVESADGTISATVEDLLGAGKRKRLLRD------TTPLQRGI 117
Query: 86 IRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 145
IR+L +V+DLS A AE D RP+R + + + FV EFF+QNP+SQ+G++ ++DG+A +
Sbjct: 118 IRHLILVLDLSSAMAEKDLRPTRYLLTLRYAQEFVLEFFEQNPISQLGVLGMRDGLAVRI 177
Query: 146 TDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTC 203
+D+ G+P HI A+ + G SLQNAL++ +G L P++G REVLI++ AL +
Sbjct: 178 SDMSGNPTDHIMAIQALRPKDPKGTPSLQNALEMARGALFHTPTHGTREVLIIFGALLSS 237
Query: 204 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS----YSVALDESHFKELIM 259
DPGDI +TI KIR S+IGL+A++ IC+ LC T Y VAL+E HF+EL M
Sbjct: 238 DPGDIHQTITALVADKIRISIIGLAAQVAICRDLCARTNNGDDTVYGVALNEQHFRELFM 297
Query: 260 E-HAPPPPAIAEFAIAN------------------LIKMGF--PQRAGEGSISICSCHKE 298
+ APP +A + L+ MGF + S+C+CH +
Sbjct: 298 DVTAPPATTVAPTSTPTAFSANGPKTTTTSTTTSSLLMMGFPSLTLTTTPTPSLCACHSK 357
Query: 299 VKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDP 358
GY C RC A+VC LP+ C CGL L+ S HLARSYHHLFP+ + EV+
Sbjct: 358 PSRA-GYLCCRCNAKVCTLPSSCPCCGLTLILSTHLARSYHHLFPLMNWVEVS--WRRAA 414
Query: 359 RNRSRSTCFGC-----QQSLLSSGNKP---------GLYVA----CPKCKKHFCLECDIY 400
R RS S CF C + L SG G+ V+ CP C+ HFC++CD++
Sbjct: 415 RKRSAS-CFACGVGFPRMPKLVSGEPEETAKAAVGVGVSVSGRYECPVCECHFCIDCDVF 473
Query: 401 IHESLHNCPGCES 413
HE +HNCPGC+S
Sbjct: 474 AHEVVHNCPGCQS 486
>gi|393909764|gb|EJD75581.1| nucleolar protein 14 [Loa loa]
Length = 1208
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 156/401 (38%), Positives = 231/401 (57%), Gaps = 29/401 (7%)
Query: 19 DEDDNLNGGLEAWERSYADDRSW-EALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVAT 77
++DD G WE YAD + + L EDESG + + ++RL +R
Sbjct: 2 NDDDEPEGY--TWEVDYADGLNIRDVLHEDESGSIEKSVAKLILDTKRKKRLNNRP---- 55
Query: 78 TARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTV 137
A+++ G++RYLY+VID S + A+ PSR+AV K + F+ +F +QNP+SQ+G+V
Sbjct: 56 -AKVRLGIMRYLYLVIDCSFSMADKSIPPSRLAVTIKALNQFLDKFSEQNPISQVGIVVC 114
Query: 138 KDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLI 195
KD A CL L G+ ++L + ++ C G+ SL N+L L P Y REV++
Sbjct: 115 KDKRAECLIPLTGNVRLVKESLSTITEVLCHGEFSLHNSLMAAIKSLHSYPGYASREVIL 174
Query: 196 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFK 255
+ ++LSTCDP +I T + K IRCSVI LSAE+FI + LC T G ++V LD +HF+
Sbjct: 175 IVASLSTCDPSNIFGTFELLKRYHIRCSVISLSAEVFIFRKLCSATSGCHNVILDSTHFE 234
Query: 256 ELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHK-EVKV--GVGYTCPRCKA 312
++ EHA PP + + A +++++MGFP S S C CH+ E++ G G+ CP+C A
Sbjct: 235 VILNEHANPPIS-SRNAESSVVRMGFPAHESIDSPSFCLCHQSEIRPSGGRGFFCPQCGA 293
Query: 313 RVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQS 372
R C LP +CRIC L L+S+P LARS H+L P+ F+E+ + + CF C +
Sbjct: 294 RYCSLPVECRICKLTLISAPQLARSLHNLLPLPAFEEI---------DTTERVCFACIRQ 344
Query: 373 LLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 413
L C CK FC++CD+ +HESL CPGC+S
Sbjct: 345 LDDKS------FVCKNCKSTFCIDCDVLLHESLQICPGCKS 379
>gi|429848008|gb|ELA23542.1| tfiih basal transcription factor complex p47 subunit
[Colletotrichum gloeosporioides Nara gc5]
Length = 488
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 163/421 (38%), Positives = 231/421 (54%), Gaps = 62/421 (14%)
Query: 39 RSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRA 98
RSWE + E G L A A+ RRRL + T +Q+G+IR+L +V+D+S A
Sbjct: 54 RSWEEVTEGADGSLAV---GASLEAEKRRRL-----LKDTTPLQRGIIRHLVLVLDMSFA 105
Query: 99 AAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKA 158
E D P+R V FV+E+F+QNP+SQ+G++ ++DGVA ++D+ G+P H++
Sbjct: 106 MTEKDMLPNRYRVTWAYAADFVKEYFEQNPISQLGIIGMRDGVALRISDMSGNPTDHLEK 165
Query: 159 LMGKLGC--SGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCK 216
L G SG+ SLQNAL++ +G L PS+G REVL+++ AL + DP DI ETI
Sbjct: 166 LKSFEGQDPSGNPSLQNALEMCRGALFHAPSHGTREVLVVFGALLSSDPADIHETISSLI 225
Query: 217 ESKIRCSVIGLSAEMFICKHLCQDTGGS----YSVALDESHFKELIMEHAPPPPA-IAEF 271
+IR SV+GL+A++ IC LC T YSV ++++HF++L++ PP A
Sbjct: 226 TDRIRVSVVGLAAQVAICAELCSRTNSGDDTQYSVCMNDAHFRDLLLAATTPPVTRTAAQ 285
Query: 272 AIANLIKMGFPQRA---GEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQL 328
+ A+L+ MGFP R GE + +IC+CH + GY C RC RVC LP +C CGL L
Sbjct: 286 STASLLMMGFPSRTLVRGEAT-AICACHNK-PAREGYLCTRCSTRVCRLPIECPACGLTL 343
Query: 329 VSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC------------------- 369
+ S HLARSYHHLFP+ + EV P + S C+ C
Sbjct: 344 ILSTHLARSYHHLFPLRNWVEV-PWA----KAGSSKACYSCLTAFPEPPRASKKRDKEKA 398
Query: 370 -----------------QQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCE 412
S L ++ G Y AC C HFC++CD+Y HE +HNCPGC+
Sbjct: 399 NDNDGVTTTTPVAPTPVAPSELKGVSESGRY-ACTVCNSHFCIDCDVYAHEVIHNCPGCQ 457
Query: 413 S 413
S
Sbjct: 458 S 458
>gi|302656432|ref|XP_003019969.1| hypothetical protein TRV_05937 [Trichophyton verrucosum HKI 0517]
gi|291183747|gb|EFE39345.1| hypothetical protein TRV_05937 [Trichophyton verrucosum HKI 0517]
Length = 515
Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 159/425 (37%), Positives = 238/425 (56%), Gaps = 54/425 (12%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNS------------AFYHAQYRRRLRDRS----- 73
WE + R+WE L E G + + +F R LR +
Sbjct: 64 WEVA----RTWETLVEGADGTITATVDGLLEADKRKRCVFSFSTLGKHRLLRTKEKMLII 119
Query: 74 --LVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQ 131
L+ T +Q+G+IR++ +V+DLS A AE D RP+R + + + FV+EFF+QNP+SQ
Sbjct: 120 CRLLKDTTPLQRGIIRHMILVLDLSFAMAEKDLRPTRYLLTLRYAQKFVQEFFEQNPISQ 179
Query: 132 IGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYG 189
+G++ +KDG+A ++++ G+P H+ AL + G SLQNAL++ +G L PS+G
Sbjct: 180 LGIMGMKDGIAVQISEMSGNPTEHMLALHALRAEDPKGLPSLQNALEMARGSLYHTPSHG 239
Query: 190 HREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSY 245
REV+I+ AL + DPGDI +TI K+R +IGL+A++ IC+ +C T SY
Sbjct: 240 TREVIIILGALLSSDPGDIHQTITSLVADKVRVGIIGLAADVAICREICAKTNDGNDSSY 299
Query: 246 SVALDESHFKELIMEHAPPPPAIAE-FAIANLIKMGFPQRAGEGSISICSCHKEVKVGVG 304
VA+DE H +L+++ PP ++ ++ +L+ MGFP R E S+C+CH + G G
Sbjct: 300 GVAIDEKHLWDLLLDVTTPPVTYSQRYSSNSLLMMGFPSRTVEPFPSLCACHSKPVRG-G 358
Query: 305 YTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNR-SR 363
Y C RC ++VC LP +C C L L+ S HLARSYHHLFP+ + EV P R SR
Sbjct: 359 YMCSRCGSKVCSLPAECPTCNLTLILSTHLARSYHHLFPLINWVEV-------PWKRASR 411
Query: 364 S-TCFGCQQSL----------LSSGNKPGLYVA----CPKCKKHFCLECDIYIHESLHNC 408
S +CF C + + G+ V+ C C HFC++CD++ HE +HNC
Sbjct: 412 SVSCFACGNPFPAVPPRDKWDMRDRSIKGMSVSSRYECTVCHHHFCIDCDVFAHEVVHNC 471
Query: 409 PGCES 413
PGC+S
Sbjct: 472 PGCQS 476
>gi|71022397|ref|XP_761428.1| hypothetical protein UM05281.1 [Ustilago maydis 521]
gi|46101297|gb|EAK86530.1| hypothetical protein UM05281.1 [Ustilago maydis 521]
Length = 539
Score = 277 bits (709), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 155/430 (36%), Positives = 230/430 (53%), Gaps = 70/430 (16%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYL 89
+WE +Y RSW+A+ ED+SG L S ++ RR L+D A +Q+G+IR+L
Sbjct: 98 SWEATY--KRSWDAVAEDDSGSLESTVRSMIEGSKRRRVLKD------VAPVQRGIIRHL 149
Query: 90 YIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
++IDLS + E D RP+R V + FV E+FDQNP+ Q+ ++ + G+A L +G
Sbjct: 150 VLLIDLSASMLEKDMRPNRFDVTLQYAREFVGEYFDQNPIGQLSIIGTRSGIAERLAMMG 209
Query: 150 GSPESHIKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 207
G+ H +L K L G+ SLQNAL++ + L +P+ RE+L ++ +L+TCDPG+
Sbjct: 210 GNTVDHTASLSNKRRLEPRGEPSLQNALEMARSSLVHLPASNSREILAIFGSLTTCDPGN 269
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPP- 266
I +TI + IR S++ L+AE+ + K +C TGG++SVAL+E HF + + E PPP
Sbjct: 270 IHDTIATLVKDNIRVSIVHLAAEVKVFKDVCTRTGGTFSVALNEGHFHDSLFELVPPPAV 329
Query: 267 ------------AIAEFAI---------------ANLIKMGFPQR-AGEGSISICSCHKE 298
IA+ + +L++M FP R + ++C+CH
Sbjct: 330 EGKPRRTRQHMVGIADGSTAMDAEDDDEDGVQAGVDLLQMAFPLRLPAHAAPTLCACHSR 389
Query: 299 VKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPI-----APFDEVTPL 353
+ G GY CPRC +VC +PTDC +CG+ +V S HLARSYHHLFP+ P+ VTP
Sbjct: 390 SR-GSGYLCPRCGVKVCNVPTDCPVCGITIVMSTHLARSYHHLFPVPNWKAVPWSSVTP- 447
Query: 354 CLNDPRNRSRSTCFGC-----------------QQSLLSSGNKPGLYVACPKCKKHFCLE 396
S CF C ++L +G P C +C FCLE
Sbjct: 448 -------DSDGACFSCNVPFPSLQERKEKSAAANKALEEAGLSPSSRYRCGRCAIDFCLE 500
Query: 397 CDIYIHESLH 406
CD ++HE LH
Sbjct: 501 CDAFVHEQLH 510
>gi|392593840|gb|EIW83165.1| Ssl1-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 375
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 142/332 (42%), Positives = 215/332 (64%), Gaps = 26/332 (7%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYL 89
WE SY RSW+ +QEDE+G L+ + R R R L+A I++ +IR+L
Sbjct: 53 TWEASYT--RSWDTVQEDEAGSLQGAVE------DWVARSRRRRLLAPANAIRRAIIRHL 104
Query: 90 YIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
++IDLS + + D RP+R + + F+ E+FDQNPL QIG+V ++ GV + ++
Sbjct: 105 ILLIDLSSSMLDRDMRPTRFDLTLEYTREFITEWFDQNPLGQIGVVGMRAGVGERIGEMS 164
Query: 150 GSPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 207
G+P+ + ++ K+ +G+ SLQNA+++ + +S +P++ RE+LI+ +L+TCDPG+
Sbjct: 165 GNPQEVLGSIADRHKIEPTGEPSLQNAIEMARNGMSHLPTHSSREILIVIGSLTTCDPGN 224
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 267
I +T+ C ++KIR SV+ L+AEM IC+ LC TGG + VAL+E HFK+L+ E PPP
Sbjct: 225 IHDTLDSCVKNKIRVSVVALAAEMKICRELCDKTGGQFGVALNEGHFKDLLFELVPPP-- 282
Query: 268 IAEFAI-----------ANLIKMGFPQRAGEGS-ISICSCHKEVKVGVGYTCPRCKARVC 315
A+ A+ A+L+ MGFP R + + S+C CH ++K G+ CPRC A+VC
Sbjct: 283 -AQRAVNRAGGGAGSTSADLMMMGFPTRLPDTTPPSLCVCHSDLK-SEGFLCPRCMAKVC 340
Query: 316 ELPTDCRICGLQLVSSPHLARSYHHLFPIAPF 347
++PTDC ICGL +VSSPHLARSYHHLFP+ P+
Sbjct: 341 DVPTDCDICGLMIVSSPHLARSYHHLFPVRPY 372
>gi|149248450|ref|XP_001528612.1| suppressor of stem-loop protein 1 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448566|gb|EDK42954.1| suppressor of stem-loop protein 1 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 509
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 170/469 (36%), Positives = 244/469 (52%), Gaps = 105/469 (22%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRS---LVATTARIQKGLI 86
AWE Y RSW+ +++DE G N +F A + + +R + + Q+G+I
Sbjct: 59 AWEDEY--QRSWDIVKDDEWG------NGSF-EAMVQSIIENRKKKIMKNPSVPYQRGII 109
Query: 87 RYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLT 146
R L I ID S+A AE D RP+R+++ ++ FV EFFDQNP+SQIG+V +++GVAN ++
Sbjct: 110 RTLVIAIDGSQAMAEKDLRPTRLSMTLNYLQEFVVEFFDQNPISQIGIVLMRNGVANLVS 169
Query: 147 DLGGSPESHIKALM-------GKLGCSGDSSLQNALDLVQGLL------SQIPSYGHREV 193
++ G P+ HI L K GD SLQN L++ + LL S + +E+
Sbjct: 170 EVSGLPQYHIDKLRQLKARQHNKFEPKGDPSLQNTLEMARSLLKFNFGTSSNNTKNSKEI 229
Query: 194 LILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG--------GSY 245
L++ +L T DPG+I +TI+ + +I+ VIGLSA++ IC+ L T +Y
Sbjct: 230 LVVLGSLFTSDPGNIHKTIEGLVKDEIKVRVIGLSAQVAICQELVNRTNHEPKNTMSKNY 289
Query: 246 SVALDESHFKELIMEHAPPPPAIAEF------------AIANLIKMGFPQRA-------- 285
V ++E HFKEL+M+ P P EF A +IKMGFP +A
Sbjct: 290 GVIMNEYHFKELLMDCVTPLPLTEEFRKPTESTNQGGTAGVPVIKMGFPSKAQPNVTSAI 349
Query: 286 -----------------GEGS--------ISICSCHKEVKVGVGYTCPRCKARVCELPTD 320
+GS +S S + + +GY CP+CK++VC LPT
Sbjct: 350 GNTEFTVEFPNLNASYPTQGSAESKDVIEVSNNSLRQSASLIIGYRCPQCKSKVCNLPTI 409
Query: 321 CRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQ---------- 370
C +CGL L+ S HLARSYHHL P+AP+ EV D C+GCQ
Sbjct: 410 CPVCGLMLILSTHLARSYHHLVPLAPYVEVEVKSAYDSEE-----CYGCQLRFPKGVDLK 464
Query: 371 ------QSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 413
S++SS K CPKCKK FC+ CD+++HE LHNCPGCE+
Sbjct: 465 VEKKSLDSMISSRYK------CPKCKKDFCINCDVFVHEVLHNCPGCEN 507
>gi|308501637|ref|XP_003113003.1| hypothetical protein CRE_25217 [Caenorhabditis remanei]
gi|308265304|gb|EFP09257.1| hypothetical protein CRE_25217 [Caenorhabditis remanei]
Length = 376
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 160/396 (40%), Positives = 225/396 (56%), Gaps = 27/396 (6%)
Query: 21 DDNLNGGLEAWERSYADDRSW-EALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTA 79
DD G WE YA+ + + L EDE G + + A Y A +R+ R L
Sbjct: 2 DDEEQKGY-TWEAGYAEGLNINDVLVEDEGGSIE--KSIAKYVADSKRKAR---LAKRPE 55
Query: 80 RIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKD 139
RI+ G++R++ IVID SR PSR VV K +++F+ FF+QNP++QIGL+T KD
Sbjct: 56 RIRLGIMRHVMIVIDCSRFMTSKAMPPSRFVVVMKALQSFLERFFEQNPIAQIGLITCKD 115
Query: 140 GVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILY 197
A +T + G+ ++L + + C GD SLQNAL L L +P + REV+I+
Sbjct: 116 RKAERMTMMTGNIRVLKESLNSLTEAFCGGDFSLQNALQLACANLKGMPGHVSREVVIVM 175
Query: 198 SALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKEL 257
+ALS+ DPG+I TI+ K IRCS IGLSAEMFICK + + T G YSVALD H + L
Sbjct: 176 AALSSIDPGNIFSTIESMKRMNIRCSAIGLSAEMFICKEMAKATKGEYSVALDPDHLQLL 235
Query: 258 IMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVK--VGVGYTCPRCKARVC 315
+H PP + A+ + N I +GFP + S C CH + K G+ C +C AR C
Sbjct: 236 FSKHTLPPSS-AKSSECNAIHVGFPHHELIKTRSFCVCHPDSKPVSSRGFICTQCGARHC 294
Query: 316 ELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLS 375
+P +C +C L LV++P LAR++ HL P+A F ++ + +R C+ C+ L S
Sbjct: 295 SIPAECPVCKLTLVAAPQLARAFRHLQPLAAFQQI---------DVARGQCYACETRLAS 345
Query: 376 SGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
G + C KC+ FCL+CD +HESLH CPGC
Sbjct: 346 EGFR------CEKCRSVFCLDCDTLLHESLHVCPGC 375
>gi|449300691|gb|EMC96703.1| hypothetical protein BAUCODRAFT_486555 [Baudoinia compniacensis
UAMH 10762]
Length = 459
Score = 274 bits (700), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 166/457 (36%), Positives = 242/457 (52%), Gaps = 63/457 (13%)
Query: 10 NGEAEEEEEDEDDNL---NGGLEA------------WERSYADDRSWEALQEDESGFLRP 54
+ E + E DEDD + +GG A WE + + + WE LQE G +
Sbjct: 5 DAEYDGEGPDEDDVMEVSDGGRRAMASRPKERAQARWEATASSN--WE-LQEAADGSIEG 61
Query: 55 IDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAK 114
I + +R L+D T +Q+G+IR+ +V+DLS A E D RP+R +
Sbjct: 62 ILGGLEEAGKRKRLLKD------TTPLQRGIIRHTLLVLDLSSAMLEKDLRPTRHLLTIN 115
Query: 115 QVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQ 172
FVRE+F+QNP+SQ+G+ +++G+A ++D+ G+P HI AL + G+ SLQ
Sbjct: 116 YTIMFVREYFEQNPISQLGIFGMREGLAIRISDMSGNPNDHIAALKQLRSTEPKGNPSLQ 175
Query: 173 NALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMF 232
NALD+ + L PS+G REV+I+ AL + DPGDI +TI+ C +IR +IGL+A+M
Sbjct: 176 NALDMARAALYHTPSHGTREVVIVLGALLSSDPGDIHDTIKACIRDRIRVRIIGLAAQMH 235
Query: 233 ICKHLCQDTGGS----YSVALDESHFKELIMEHAPPP------PAIAEFAIANLIKMGFP 282
IC +C+ T G Y+VA+DE +++ +M+ PP + A L+ MGFP
Sbjct: 236 ICAEICRKTNGGDENYYNVAVDEVDYRQQLMDITTPPVLRSTDTEAQKHNQAALLMMGFP 295
Query: 283 QRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLF 342
R E ++C+CH + G GY C RCKA+VC LP C C L L+ S HLARSYHHLF
Sbjct: 296 SRIVEEKPTLCACHGNLTRG-GYLCSRCKAKVCNLPATCPTCDLTLILSTHLARSYHHLF 354
Query: 343 PIAPFDEVTPLCLNDPRNRSRSTCFGC-----------------------QQSLLSSGNK 379
P+ + EV+ R CFGC ++ + G
Sbjct: 355 PLRNWVEVS---WTRARQEGSIQCFGCLTPFPRIPNPQEAVNGTEHDVASARTKRAEGAS 411
Query: 380 PGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLRH 416
C C +HFC++CD++ HE +HNCPGC+S H
Sbjct: 412 ESSRYECETCGQHFCIDCDVFCHEVVHNCPGCQSNAH 448
>gi|380482556|emb|CCF41168.1| hypothetical protein CH063_11526 [Colletotrichum higginsianum]
Length = 480
Score = 274 bits (700), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 161/427 (37%), Positives = 234/427 (54%), Gaps = 62/427 (14%)
Query: 39 RSWEALQEDESGFLRPIDNSAFYHAQYRRRL-RDRSLVATTARIQKGLIRYLYIVIDLSR 97
RSWE + E G L A A+ RRRL RD T +Q+G+IR+L +V+D+S
Sbjct: 48 RSWEEVTEGADGSLAV---GASLEAEKRRRLLRD------TTPLQRGIIRHLVLVLDMSF 98
Query: 98 AAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIK 157
A E D P+R V FV+E+F+QNP+SQ+ ++ ++DGVA ++D+ G+P H++
Sbjct: 99 AMTEKDMLPNRYRVAWAYAADFVKEYFEQNPISQLAIIGMRDGVAIRISDMSGNPTDHLE 158
Query: 158 ALMGKLGC--SGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKC 215
L G SG+ SLQNAL++ +G L PS+G REVLI++ AL + DPGDI +TI
Sbjct: 159 KLKTFEGQDPSGNPSLQNALEMCRGALFHAPSHGTREVLIVFGALLSSDPGDIHDTITSL 218
Query: 216 KESKIRCSVIGLSAEMFICKHLCQDTGGS----YSVALDESHFKELIMEHAPPPPA-IAE 270
+IR S++GL+A++ IC LC T YSV ++++HF++L++ PP A
Sbjct: 219 IADRIRVSIVGLAAQVAICAELCSRTNAGDDTQYSVCMNDAHFRDLLLAATTPPVTRTAA 278
Query: 271 FAIANLIKMGFPQRA---GEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQ 327
+ A+L+ MGFP R GE + ++C+CH + GY C RC RVC LP +C C L
Sbjct: 279 QSTASLLMMGFPSRTLAQGEAT-AVCACHNK-PAREGYLCTRCGTRVCRLPIECPACSLT 336
Query: 328 LVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL-------------- 373
L+ S HLARSYHHLFP+ + EV L +S++ C+ C +
Sbjct: 337 LILSTHLARSYHHLFPLRNWVEV----LWAEATKSKA-CYSCLTTFPEPPKASRKKDKDK 391
Query: 374 --------------------LSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 413
L ++ G Y C C HFC++CD+Y HE +HNCPGC+S
Sbjct: 392 DSDGVPTTTPVAPTPVIASELKGVSESGRY-GCTVCGNHFCIDCDVYAHEVIHNCPGCQS 450
Query: 414 LRHSNPI 420
P+
Sbjct: 451 DTRGAPM 457
>gi|403414452|emb|CCM01152.1| predicted protein [Fibroporia radiculosa]
Length = 377
Score = 273 bits (699), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 142/331 (42%), Positives = 208/331 (62%), Gaps = 25/331 (7%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYL 89
AWE SY RSW+ +QEDE+G L+ + R L+A I++ +IR+L
Sbjct: 58 AWEASYT--RSWDTVQEDEAGSLQGAVEDLIARGRRR------RLLAPATAIRRAIIRHL 109
Query: 90 YIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
+++DLS A + D RP+R ++ + F+ E+FDQNPL QIG+V ++ G+ N L
Sbjct: 110 VLLLDLSSAMMDRDMRPTRFDLMLQYAREFITEWFDQNPLGQIGIVGMRGGIGNPQDVLK 169
Query: 150 GSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIM 209
E H KL +G+ SLQNA+D+ + + +P++ RE+LI++ +L+TCDPG+I
Sbjct: 170 AISERH------KLEPNGEPSLQNAIDMARASMGHLPTHSSREILIIFGSLTTCDPGNIH 223
Query: 210 ETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPP--A 267
+++ C + +IR SV+ L+AEM IC+ LC TGG + VAL+E HFK+L+ E PPP A
Sbjct: 224 DSLDDCVKDRIRISVVALAAEMKICRELCDKTGGQFGVALNEGHFKDLLFELIPPPAQRA 283
Query: 268 IAEFA-------IANLIKMGFPQRAGEGSI-SICSCHKEVKVGVGYTCPRCKARVCELPT 319
+A A+L+ MGFP R + S S+C+CH ++K G+ CPRC A+VC++PT
Sbjct: 284 VARTKGGPAGNPSADLMMMGFPTRLPDTSAPSLCACHSQLK-SEGFLCPRCCAKVCDVPT 342
Query: 320 DCRICGLQLVSSPHLARSYHHLFPIAPFDEV 350
DC ICGL +VSSPHLARSYHHLFP+ + V
Sbjct: 343 DCDICGLMIVSSPHLARSYHHLFPVKTYKAV 373
>gi|354547034|emb|CCE43767.1| hypothetical protein CPAR2_214110 [Candida parapsilosis]
Length = 498
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 166/454 (36%), Positives = 240/454 (52%), Gaps = 84/454 (18%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRS---LVATTARIQKGLI 86
AWE Y RSW+ +++DESG S + A + + +R + + Q+G+I
Sbjct: 57 AWEDEY--QRSWDIVKDDESG-------SGSFEAMVQSIIENRKKKIMKNPSTPFQRGII 107
Query: 87 RYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLT 146
R L I++D + A AE D RP+R+++ + FV EFFDQNP+SQ+G++ +++GVAN ++
Sbjct: 108 RTLVIIVDGTLAMAEKDLRPTRLSLTLNYLSEFVVEFFDQNPISQLGIILMRNGVANLIS 167
Query: 147 DLGGSPESHIKALM-------GKLGCSGDSSLQNALDLVQGLL------SQIPSYGHREV 193
++ GSP+ HI L K GD SLQN L++ + LL + S +E+
Sbjct: 168 EVSGSPQYHIDRLRQLKARQHNKYEPKGDPSLQNCLEMARSLLKFNFGSASNNSKNSKEI 227
Query: 194 LILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG--------GSY 245
L+++ +L T DPGDI +TI + I+ SVIGLSA++ IC+ L T Y
Sbjct: 228 LLVFGSLFTSDPGDIHKTIDSLVKDNIKVSVIGLSAQVAICQELVNKTNHESRNSSSKHY 287
Query: 246 SVALDESHFKELIMEHAP--PPPAIAEFAIAN----LIKMGFPQRAGEGSISICSCHK-- 297
V ++E+HFKEL+M+ P P E I LIKMGFP + + S +
Sbjct: 288 GVIMNETHFKELLMDCVTPLPLPESEEIKIETKGVPLIKMGFPSKVQPNATSTIGNSEYT 347
Query: 298 ----------------------EVKVGV------GYTCPRCKARVCELPTDCRICGLQLV 329
EV G+ GY CP+CK++VC LPT C +CGL L+
Sbjct: 348 VEFPQLNASYPTQGSNDSKDVVEVNSGLAMSQTFGYQCPQCKSKVCNLPTICPVCGLMLI 407
Query: 330 SSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQ-------QSLLSSGNKPGL 382
S HLARSYHHL P+AP+ EV PL + R C+GCQ +S ++G L
Sbjct: 408 LSTHLARSYHHLVPLAPYKEV-PLS----TSYDREYCYGCQLIFPSGVKSTKNTGTIDSL 462
Query: 383 YVA---CPKCKKHFCLECDIYIHESLHNCPGCES 413
+ C C FC+ CD++IHE LHNCPGCE+
Sbjct: 463 TSSRYRCANCCNDFCINCDVFIHEVLHNCPGCEN 496
>gi|390602659|gb|EIN12052.1| Ssl1-domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 377
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 142/331 (42%), Positives = 214/331 (64%), Gaps = 19/331 (5%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYL 89
AWE SY RSW+ +QEDE+G L +A R R R L A I++ +IR+L
Sbjct: 56 AWEASYT--RSWDMVQEDETGSL-----TAAVQDLVARGRRRRLLGPGGA-IRRTIIRHL 107
Query: 90 YIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
+V+DLS + + D RP+R + + F+ E+FDQNPL QIG+V ++ GV + +
Sbjct: 108 ILVLDLSSSMTDRDMRPTRFGLTLEYAREFITEWFDQNPLGQIGIVGMRAGVGERIGQMS 167
Query: 150 GSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 207
G+P+ +KA+ K+ +G+ SLQNA+++ + +S +P++ +E+LI++ +L+T DPG+
Sbjct: 168 GNPQDVLKAISERHKMEPNGEPSLQNAIEMARSSMSHLPTHSSKEILIVFGSLTTVDPGN 227
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPP- 266
I +T+ C + +IR S++ L+AEM IC+ +C TGG + VA++E H+K+L+ E PPP
Sbjct: 228 IHDTLDACIKDRIRISIVALAAEMKICREICDKTGGQFGVAMNEGHYKDLLFELIPPPAQ 287
Query: 267 ------AIAEFAIANLIKMGFPQRAGEGS-ISICSCHKEVKVGVGYTCPRCKARVCELPT 319
A + A A+L+ MGFP R + S S+C CH E+K G+ CPRC A+VC++PT
Sbjct: 288 RALTSKAGSGGATADLMIMGFPTRLPDTSPPSLCVCHSELK-SEGFLCPRCLAKVCDVPT 346
Query: 320 DCRICGLQLVSSPHLARSYHHLFPIAPFDEV 350
DC ICGL +VSSPHLARSYHHLFP+ P+ V
Sbjct: 347 DCDICGLMIVSSPHLARSYHHLFPVKPYTAV 377
>gi|358377786|gb|EHK15469.1| hypothetical protein TRIVIDRAFT_56425 [Trichoderma virens Gv29-8]
Length = 402
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 154/366 (42%), Positives = 217/366 (59%), Gaps = 38/366 (10%)
Query: 78 TARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTV 137
T +Q+G+IR+L +V+D+S A AE D P+R + AFVRE+F+QNP+SQ+ +V +
Sbjct: 19 TTPLQRGIIRHLVLVLDMSFAMAEKDLLPTRYRLTLSYAAAFVREYFEQNPISQLAIVGM 78
Query: 138 KDGVANCLTDLGGSPESHIKALMGKLG--CSGDSSLQNALDLVQGLLSQIPSYGHREVLI 195
+DGVA ++D+GG+P H++ L G G+ SLQNAL++ +G L PS+G REVLI
Sbjct: 79 RDGVAVRVSDMGGNPAEHLERLRDLDGQDPQGNPSLQNALEMCRGALFHAPSHGTREVLI 138
Query: 196 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDE 251
+Y AL + DPGDI +TI +IR SV+GLSA++ IC LC T Y+VA+DE
Sbjct: 139 IYGALLSSDPGDIHDTISNLIAERIRVSVVGLSAQVAICAELCSRTNVGDDSQYNVAMDE 198
Query: 252 SHFKELIME-HAPPPPAIAEFAIANLIKMGFPQR--AGEGSISICSCHKEVKVGVGYTCP 308
+HFK+L + PP E + ++L+ MGFP R A G+ S C+CH + GY C
Sbjct: 199 THFKDLFLAITTPPVNRTKEQSTSSLLMMGFPSRTLAPGGTTSYCACHSK-PCREGYLCT 257
Query: 309 RCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRS-TCF 367
RC +VC LP++C CGL L+ S HLARSYHHLFP+ + EV P +RS CF
Sbjct: 258 RCGVKVCRLPSECPACGLTLILSTHLARSYHHLFPLRNWVEV-PWA-----EATRSIACF 311
Query: 368 GCQ--------------------QSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHN 407
CQ ++ ++ G Y C C HFC++CD++ H +HN
Sbjct: 312 SCQCPFPEPPKPNKEKGKDEAPTKAPAKGVSESGRY-KCQVCGNHFCIDCDVFAHMVIHN 370
Query: 408 CPGCES 413
CPGC+S
Sbjct: 371 CPGCQS 376
>gi|190348397|gb|EDK40844.2| hypothetical protein PGUG_04942 [Meyerozyma guilliermondii ATCC
6260]
Length = 488
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 158/451 (35%), Positives = 247/451 (54%), Gaps = 76/451 (16%)
Query: 27 GLEAWERSYADDRSWEALQ-EDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGL 85
G +WE Y R W+ ++ EDE+G + ++N + R++ + + T Q+G+
Sbjct: 46 GGYSWEDRYK--RPWDIVKDEDEAG--QSLENVIQTMIENRKK---KIMKNPTTPFQRGI 98
Query: 86 IRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 145
IR L ++ID S +E D RP+R A+ + ++ F+ EFFDQNP+SQ+G+V +++GV+N +
Sbjct: 99 IRTLIVIIDGSSTMSEKDLRPNRFAMTLQLLQEFIVEFFDQNPISQLGIVMMRNGVSNLV 158
Query: 146 TDLGGSPESHIKALM-------GKLGCSGDSSLQNALDLVQGLL------SQIPSYGHRE 192
+++ GSP+ HI L + GD SLQN+L++ + +L + + +E
Sbjct: 159 SEVNGSPQYHIDKLRSLRSRQHNRFEPKGDPSLQNSLEMARAMLKYNFGTNMDDNKNSKE 218
Query: 193 VLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDT----------- 241
VLIL+ AL T DPGDI +TI + +I+ +IGLSA++ IC+ + T
Sbjct: 219 VLILFGALFTSDPGDIHKTIDNLIKDEIKVKIIGLSAQVSICQQIANKTNNLGSRTTGAN 278
Query: 242 ---GGSYSVALDESHFKELIMEHAPPPPAIAEFAIAN----LIKMGFPQR------AGEG 288
G +YSV ++E+H++EL+M+ P P A + LIKMGFP + A
Sbjct: 279 SSSGSNYSVIMNETHYRELLMDCVVPLPVAATEKRSTVGVPLIKMGFPSKVSPPISASNN 338
Query: 289 SIS-----ICSCH---------KEVKVG-------VGYTCPRCKARVCELPTDCRICGLQ 327
+++ +C+CH V +G +GY CP+C++RVC LPT C CGL
Sbjct: 339 TVNLDLPVLCACHPTNGSLESKDAVTIGAESSTSIIGYQCPQCRSRVCHLPTICPTCGLM 398
Query: 328 LVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVA-- 385
L+ S HLARSYHHL P+ + EV + + C+GC +G G A
Sbjct: 399 LILSTHLARSYHHLVPLREYKEVPAA-----DHYEGTHCYGCLLKFPEAGGPDGPLRASS 453
Query: 386 ---CPKCKKHFCLECDIYIHESLHNCPGCES 413
CP C + FC++CD+++HE+LHNCPGCES
Sbjct: 454 RYRCPTCARDFCIDCDVFVHETLHNCPGCES 484
>gi|193627420|ref|XP_001947532.1| PREDICTED: general transcription factor IIH subunit 2-like
[Acyrthosiphon pisum]
Length = 388
Score = 271 bits (693), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 143/393 (36%), Positives = 236/393 (60%), Gaps = 27/393 (6%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +++WE ++EDE G ++ S + +RL L ++ G++R+L+
Sbjct: 11 WEGGY--EKTWEEVKEDEGG---NVEWSVKEIIEKSKRL----LATRQPNVRLGMMRHLF 61
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+++D S + E D +P+R K ++ F++++FDQNP+SQ+GL+T ++ A +++L G
Sbjct: 62 VIVDSSNSMVEKDLKPTRQLCTYKLLQDFIQDYFDQNPISQLGLITTRNSSAERISELSG 121
Query: 151 SPESHIKALMGKLG----CSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPG 206
+ + H++ L G C+G S+QN+L++ ++ +PS+ +E+LI+ S+LS+CDPG
Sbjct: 122 NRKYHLEELKKTFGDFNYCNGLMSVQNSLEIALSVMKMLPSHTSKEILIIGSSLSSCDPG 181
Query: 207 DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPP 266
+I +I+ K IR S+I L+AE+ + +HLC +T G ++V +D+ HFK ++ P P
Sbjct: 182 EINTSIEMLKTHNIRVSMIHLAAEVRMFRHLCNETKGKHNVIVDDVHFKHILWSLVEPVP 241
Query: 267 AIAEFAIANLIKMGFPQRAGEG-SISICSCH--KEVKVGV-GYTCPRCKARVCELPTDCR 322
+ A+ +KMGFPQ + + CSCH + K+ G+ CP+C ++ CELP +C+
Sbjct: 242 -LPNSVDASCVKMGFPQELEQKPPFTTCSCHLAEGGKLNAKGFFCPQCNSKYCELPVECK 300
Query: 323 ICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGL 382
CGL LVSS HLARS HHL PI PF ++ + S + C+GC++ + +
Sbjct: 301 CCGLILVSSLHLARSLHHLVPIKPFIKI------ELEEGSSAYCYGCRKRIKVPAE--NV 352
Query: 383 YVACPKCKKHFCLECDIYIHESLHNCPGCESLR 415
Y C CKKH+C CDIY+H +LH CPGC R
Sbjct: 353 YF-CESCKKHYCDGCDIYVHNTLHVCPGCAVKR 384
>gi|452824298|gb|EME31302.1| transcription initiation factor TFIIH subunit H2 isoform 2
[Galdieria sulphuraria]
Length = 334
Score = 271 bits (693), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 139/335 (41%), Positives = 213/335 (63%), Gaps = 12/335 (3%)
Query: 18 EDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVAT 77
+D++ + L +WE+ RSWE L+EDE+G ++ D S+F ++ +R+ ++ T
Sbjct: 2 DDDEKPESLTLYSWEQDIV--RSWETLEEDETGKIK--DLSSFERSRVKRKRKN-----T 52
Query: 78 TARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTV 137
+++GLIR+L +++DLSR A E D +PSR V + F+ +F++NP+SQ+ +V +
Sbjct: 53 QQNVRRGLIRFLVLILDLSREAKETDVKPSRGEVCLSCAQKFLYSYFNENPISQLAVVVL 112
Query: 138 KDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLI 195
+DGVA L+ +G +P H + + + G G+ SLQN LD+ LL IPSYG REVLI
Sbjct: 113 RDGVAEKLSSMGSNPRQHSEVVKNANQKGFYGNCSLQNGLDVALSLLHSIPSYGSREVLI 172
Query: 196 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFK 255
LY+++S+CDPGDI +TI+K ++ +IRC+VIG++AE++I K+L T GSY V ++ESH
Sbjct: 173 LYNSISSCDPGDIRQTIEKLEKERIRCNVIGMAAELYILKYLAARTHGSYFVCMNESHLL 232
Query: 256 ELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVC 315
EL+ + P I L++MGFP +C K ++ V + CPRC+
Sbjct: 233 ELLEDFVVPSALIENNTKTALVRMGFPTLKAYKEPKVCLNDKVLRNQV-FVCPRCECCYG 291
Query: 316 ELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEV 350
E+P +C +CGL LVSS LARSYHHLFP+A F E+
Sbjct: 292 EIPIECVLCGLILVSSSQLARSYHHLFPVANFHEL 326
>gi|339258242|ref|XP_003369307.1| general transcription factor IIH subunit 2 [Trichinella spiralis]
gi|316966476|gb|EFV51048.1| general transcription factor IIH subunit 2 [Trichinella spiralis]
Length = 403
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 153/385 (39%), Positives = 222/385 (57%), Gaps = 29/385 (7%)
Query: 42 EALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAE 101
E L++D+SG ++ +A H R+ + DR ++ G++R+L I++D S E
Sbjct: 33 EVLEQDDSGSIQS-SVAAITHLAKRKHIIDR-----VKGVRLGILRHLCILLDCSSVMIE 86
Query: 102 MDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH---IKA 158
D PSR V K + FV +FFDQNP+SQI ++T KD + L D GS H +KA
Sbjct: 87 KDLLPSRFISVIKALSLFVDDFFDQNPISQISIITAKDKKTDKLVDFTGSARKHKEFLKA 146
Query: 159 LMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKES 218
+ ++ SG+ SLQN+L+ +L +PS+ REVL++ +LSTCDPGDI E+++ K +
Sbjct: 147 IAEEIP-SGEFSLQNSLETANEMLRHMPSHSSREVLVIMGSLSTCDPGDIEESLEILKRN 205
Query: 219 KIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIK 278
IRC+ I LSAEM+ICK + + T G Y+V +DE K L+ A PP A + ANLI+
Sbjct: 206 NIRCNFIALSAEMYICKRIAKATNGKYAVIIDEDDLKTLLSVFALPPVATTQLG-ANLIR 264
Query: 279 MGF--------PQRAGEGSISICSCHKEVKVG----VGYTCPRCKARVCELPTDCRICGL 326
MG ++ G I H E +G VG+ CP+C + C +P +C+ICGL
Sbjct: 265 MGNSDFRRGLKTRKVGHFVFGIHMKHGE-GIGKLTCVGFICPQCNFKYCFVPMECQICGL 323
Query: 327 QLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVAC 386
L S+PHLARSY HL+PI PF+E D + C GC ++ YV C
Sbjct: 324 VLASAPHLARSYQHLYPILPFEEKAI----DKHMKKELYCAGCFSAIEVKVMFDVSYV-C 378
Query: 387 PKCKKHFCLECDIYIHESLHNCPGC 411
P C++ FC+ CD+ IHE++H+CPGC
Sbjct: 379 PGCRQDFCINCDLLIHETMHSCPGC 403
>gi|344233967|gb|EGV65837.1| hypothetical protein CANTEDRAFT_118624 [Candida tenuis ATCC 10573]
Length = 488
Score = 271 bits (692), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 164/455 (36%), Positives = 248/455 (54%), Gaps = 81/455 (17%)
Query: 26 GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGL 85
G AWE Y R+W+ +++D+SG + +++ + R++ + + TA Q+G+
Sbjct: 47 NGAYAWEDEYQ--RTWDIVKDDDSG--QTLESLIQNMIESRKK---KIMKNPTAPYQRGI 99
Query: 86 IRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 145
IR L +VID S E D RP+R +++ ++ FV EFFDQNP+SQ+G+V +++G+++ +
Sbjct: 100 IRTLVVVIDGSSIMLEKDLRPNRFSMMLSLLQEFVVEFFDQNPISQLGIVLMRNGISDVV 159
Query: 146 TDLGGSPESH---IKALMGK----LGCSGDSSLQNALDLVQGLLSQIPSYGH-------- 190
+D+ GSP+ H I+ L GK GD SLQNAL+L + LL ++G+
Sbjct: 160 SDVNGSPQFHLDKIRQLRGKQHNRFEPKGDPSLQNALELSRSLLRY--NFGNNINDTKNS 217
Query: 191 REVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS------ 244
+E+LI++ AL T DPGDI +TI + I+ VIGLSA++ IC+ + T +
Sbjct: 218 KEILIIFGALFTSDPGDIHKTISSLVKDNIKVKVIGLSAKVAICQEIVNKTNHTSNNFNN 277
Query: 245 --YSVALDESHFKELIMEHAPPPPAIAE-------FAIANLIKMGFPQRAGEGS------ 289
Y V ++ESHFKEL+M+ P P E L+KMGFP +
Sbjct: 278 PNYGVIMNESHFKELLMDCVVPLPITVEQQKEIEASKSVPLLKMGFPTKVQPTLSSSSGG 337
Query: 290 -----ISICSCH--------------KEVKVGVGYTCPRCKARVCELPTDCRICGLQLVS 330
I IC+CH ++ +GY CP+C ++VC LPT C ICGL L+
Sbjct: 338 HSLDFIQICACHSGSRTENGSDAAAIQQSSSVIGYRCPQCSSKVCSLPTVCPICGLMLIL 397
Query: 331 SPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL------LSSGNKPGLYV 384
S HLARSYHHL P+ ++EV P+ + P S C+GC + +K L
Sbjct: 398 STHLARSYHHLVPLVDYEEV-PVKGSYP----SSFCYGCLLQFPEGIENIHKDSKEKLET 452
Query: 385 A------CPKCKKHFCLECDIYIHESLHNCPGCES 413
C KCK FC++CD+++HE+LHNCPGCE+
Sbjct: 453 MSSSRYRCKKCKNDFCIDCDVFVHETLHNCPGCEN 487
>gi|448514642|ref|XP_003867164.1| RNA polymerase transcription factor TFIIH core component [Candida
orthopsilosis Co 90-125]
gi|380351502|emb|CCG21726.1| RNA polymerase transcription factor TFIIH core component [Candida
orthopsilosis Co 90-125]
Length = 511
Score = 270 bits (691), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 163/457 (35%), Positives = 235/457 (51%), Gaps = 90/457 (19%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRS---LVATTARIQKGLI 86
AWE Y RSW+ +++DE G S + A + + +R + + Q+G+I
Sbjct: 70 AWEDEY--QRSWDIVKDDELG-------SGSFEAMVQTIIENRKKKIMKNPSTPFQRGII 120
Query: 87 RYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLT 146
R L I++D + A AE D RP+R+++ + FV EFFDQNP+SQ+G++ +++GVAN ++
Sbjct: 121 RTLVIIVDGTLAMAEKDLRPTRLSLTLNYLSEFVVEFFDQNPISQLGIILMRNGVANLIS 180
Query: 147 DLGGSPESHIKALM-------GKLGCSGDSSLQNALDLVQGLL------SQIPSYGHREV 193
++ GSP+ HI L K GD SLQN L++ + LL + S +EV
Sbjct: 181 EVSGSPQYHIDRLKQLKARQHNKYEPKGDPSLQNCLEMARSLLKFNFGSASNNSKNSKEV 240
Query: 194 LILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS--------Y 245
L+++ +L T DPGDI +TI+ + I+ SVIGLSA++ IC+ L T Y
Sbjct: 241 LLVFGSLFTSDPGDIHKTIESLVKDNIKVSVIGLSAQVAICQELVNRTNNEPRNSSSKHY 300
Query: 246 SVALDESHFKELIMEHAPPPP------AIAEFAIANLIKMGFPQRAGEGSISICSCHK-- 297
V ++E+HFKEL+M+ P P E LIKMGFP + + S +
Sbjct: 301 GVIMNETHFKELLMDCVTPLPLPESEETKVETKGVPLIKMGFPSKVQPNATSTIGNSEYT 360
Query: 298 ----------------------EVKVGV------GYTCPRCKARVCELPTDCRICGLQLV 329
EV G+ GY CP+CK++VC LPT C +CGL L+
Sbjct: 361 VEFPRLNASYPTQGSNDSRDIVEVNAGLVTSPSFGYQCPQCKSKVCNLPTICPVCGLMLI 420
Query: 330 SSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRST--CFGCQQSLLSSGNKPGLYVA-- 385
S HLARSYHHL P+AP+ E+ P + S T C+GCQ SG K
Sbjct: 421 LSTHLARSYHHLVPLAPYKEI-------PVSPSYDTDFCYGCQLK-FPSGTKSTKETKTI 472
Query: 386 ---------CPKCKKHFCLECDIYIHESLHNCPGCES 413
C C FC+ CD+++HE LHNCPGCE+
Sbjct: 473 DSITSSRYRCTNCNNDFCINCDVFVHEVLHNCPGCEN 509
>gi|291224884|ref|XP_002732433.1| PREDICTED: general transcription factor IIH, polypeptide 2, 44kD
subunit-like [Saccoglossus kowalevskii]
Length = 593
Score = 270 bits (691), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 149/361 (41%), Positives = 208/361 (57%), Gaps = 54/361 (14%)
Query: 22 DNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARI 81
D+ N WE Y +R+WEA++EDE+G L+ + + H RRRL DR A +
Sbjct: 2 DDENEKTYIWEGDY--ERTWEAIKEDETGSLQTVVDDIL-HRTKRRRLLDRP-----ANV 53
Query: 82 QKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGV 141
+ G++ +E F+ E+FD NP+SQ+G++T +
Sbjct: 54 RLGML-----------------------------LEHFLEEYFDHNPISQVGILTTSNKR 84
Query: 142 ANCLTDLGGSPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSA 199
AN LT+LGG+P+ HI AL C + SLQNAL+L L +P + REVL++ +
Sbjct: 85 ANRLTELGGNPKRHIAALQKCVDKQCLKEPSLQNALELAATTLRHVPGHASREVLVILGS 144
Query: 200 LSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIM 259
L+TCDPG+I +TI+ K+ IRCSVIGLSA++ +CK LC +T GSYSV LDE HFKE+++
Sbjct: 145 LTTCDPGNIHDTIKSMKDLNIRCSVIGLSADVRVCKRLCSETQGSYSVILDEPHFKEVLL 204
Query: 260 EHAPPPPAIAEFAIANLIKMGFPQRAGEGSI------SICSCHKEVKVGV-----GYTCP 308
EH PP A A ++LI+MGFPQ S+C CH + K GY CP
Sbjct: 205 EHIKPPLATASTE-SSLIRMGFPQHQLHAEKDKLEKPSMCMCHLDSKSTQGFSTGGYFCP 263
Query: 309 RCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFG 368
+CK++ CELP +C+ CGL LVS+PHLARS+HHLFP+ F E+ L+D + C
Sbjct: 264 QCKSKYCELPIECKACGLTLVSAPHLARSFHHLFPLESFQEIQ---LSDLQESDSRVCLS 320
Query: 369 C 369
C
Sbjct: 321 C 321
>gi|239614970|gb|EEQ91957.1| RNA polymerase TFIIH complex subunit Ssl1 [Ajellomyces dermatitidis
ER-3]
gi|327356553|gb|EGE85410.1| RNA polymerase TFIIH complex subunit Ssl1 [Ajellomyces dermatitidis
ATCC 18188]
Length = 525
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 162/438 (36%), Positives = 237/438 (54%), Gaps = 65/438 (14%)
Query: 26 GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGL 85
GG E WE S R+WE+L E G + + +R LRD T +Q+G+
Sbjct: 74 GGAE-WEVS----RTWESLVESADGTISATVEGLLEAGKRKRLLRD------TTPLQRGI 122
Query: 86 IRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 145
IR+L +V+DLS A AE D RP+R + + + FV EFF+QNP+SQ+G++ ++DG+A +
Sbjct: 123 IRHLILVLDLSSAMAEKDLRPTRYLLTLRYAQEFVLEFFEQNPISQLGVLGMRDGLAVRI 182
Query: 146 TDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTC 203
+D+ G+P HI A+ + G SLQN L++ +G L + P++G REV I++ AL +
Sbjct: 183 SDMSGNPTDHILAIQSLRPKDPKGMPSLQNTLEMARGALFRTPTHGTREVFIIFGALLSS 242
Query: 204 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGG----SYSVALDESHFKELIM 259
DPGDI +TI KIR S+IGL+A++ IC+ +C T Y VAL+E HF+EL M
Sbjct: 243 DPGDIHKTINTLVADKIRVSIIGLAAQVAICRDICARTNNGDDSGYGVALNEQHFRELFM 302
Query: 260 E--------------HAPPPPAIAEFAIANLIKMGFPQR--AGEGSISICSCHKEVKVGV 303
++ ++L+ MGFP R + + ++C+CH +
Sbjct: 303 NVTTPPATTVAPTPTTTKEETKTSQTTTSSLLMMGFPSRTLSPTTTPTLCACHSKPSR-T 361
Query: 304 GYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSR 363
GY C RC A+VC LPT C CGL L+ S HLARSYHHLFP+ + EV+ R RS
Sbjct: 362 GYLCSRCGAKVCTLPTSCPCCGLTLILSTHLARSYHHLFPLMNWVEVS--WRRAARKRS- 418
Query: 364 STCFGCQQSL------------------------LSSGNKPGLYVA----CPKCKKHFCL 395
++CF C + G+ V+ CP C+ HFC+
Sbjct: 419 ASCFACAVGFPRVPKQFSGGEQEGAGEEQGEGEGETVKGPSGISVSGRYECPVCECHFCI 478
Query: 396 ECDIYIHESLHNCPGCES 413
+CD++ HE +HNCPGC+S
Sbjct: 479 DCDVFAHEVVHNCPGCQS 496
>gi|17555086|ref|NP_499239.1| Protein T16H12.4 [Caenorhabditis elegans]
gi|27923998|sp|P34567.3|TF2H2_CAEEL RecName: Full=General transcription factor IIH subunit 2; AltName:
Full=TFIIH basal transcription factor complex subunit 2
gi|15718246|emb|CAA83139.3| Protein T16H12.4 [Caenorhabditis elegans]
Length = 376
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 158/397 (39%), Positives = 224/397 (56%), Gaps = 28/397 (7%)
Query: 20 EDDNLNGGLEAWERSYADDRSW-EALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATT 78
+DD G WE YA+ + + L EDE G + + A Y A +R+ R L
Sbjct: 2 DDDEQKG--YTWEAGYAEGLNINDVLVEDEGGSIE--KSIAKYVADSKRKAR---LTKRP 54
Query: 79 ARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVK 138
RI+ G++R++ IVID SR PSR VV K ++ F+ FF+QNP++QIGL+T K
Sbjct: 55 ERIRLGIMRHVMIVIDCSRFMTSKAMPPSRFVVVMKALQTFLDRFFEQNPIAQIGLITCK 114
Query: 139 DGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLIL 196
D A+ LT + G+ ++L + + C GD SLQNAL L L +P + REV+++
Sbjct: 115 DRKADRLTMMTGNIRVLKESLNTLTEAFCGGDFSLQNALQLACANLKGMPGHVSREVVLV 174
Query: 197 YSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKE 256
SALST DPG+I TI+ K IRCS IGLSAEMF+CK + + T G YSVALD H +
Sbjct: 175 ISALSTIDPGNIYSTIETMKRMNIRCSAIGLSAEMFVCKEMAKATKGEYSVALDPDHLQL 234
Query: 257 LIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVK--VGVGYTCPRCKARV 314
L +H PP + A+ + N I +GFP + S C CH + K G+ C +C AR
Sbjct: 235 LFSKHTLPPSS-AKSSECNAIHVGFPHHELITTRSFCVCHPDTKPISSRGFICTQCGARH 293
Query: 315 CELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLL 374
C +P +C +C L LV++P LAR++ HL P++ F+++ +R C+ C+ L
Sbjct: 294 CSIPAECPVCKLTLVAAPQLARAFRHLQPLSAFEQI---------EVTRGFCYACETRLS 344
Query: 375 SSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
G + C C+ FCL+CD +HESLH CPGC
Sbjct: 345 GEGFR------CGSCQLVFCLDCDTLLHESLHVCPGC 375
>gi|320585884|gb|EFW98563.1| suppressor of stem-loop protein 1 [Grosmannia clavigera kw1407]
Length = 524
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 163/430 (37%), Positives = 230/430 (53%), Gaps = 54/430 (12%)
Query: 26 GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRR-LRDRSLVATTARIQKG 84
G AWE RSW+ + E E G + ++ A A+ RRR LRD T +Q+G
Sbjct: 77 GQQAAWETV---KRSWDTVGEAEDGQVLGVEFLAA--AEKRRRVLRD------TTPLQRG 125
Query: 85 LIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 144
+IR++ +V+D+S A + D+ PS V FVR FF+QNP+SQ+ +V ++DGVA
Sbjct: 126 IIRHVVLVLDMSAAMSSRDYLPSCQRVALDCAADFVRAFFEQNPISQLAVVAMRDGVALR 185
Query: 145 LTDLGGSPESHIKALMGKLGC--SGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALST 202
++D+GGSP H+ L G G SLQNAL++ +G L P++G REVL+++ AL +
Sbjct: 186 VSDMGGSPAEHLDRLADWDGVEPQGQPSLQNALEMCRGALFHTPAHGTREVLVVFGALLS 245
Query: 203 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELI 258
DP DI +TI +IR S++GL+A++ +C +C T +Y+VA + HF EL+
Sbjct: 246 SDPADIHDTIAALVADRIRVSIVGLAAKVAVCAEICARTNPGDEAAYAVARHDVHFHELV 305
Query: 259 MEHAPPPPA------IAEFAIANLIKMGFPQR------AGEGSISICSCHKEVKVGVGYT 306
+ PP A A+L+ MGFP R AG G +S+C+CH V GY
Sbjct: 306 LAATTPPATRPDDGDAASTGPASLLMMGFPSRAIADTVAGGGGLSVCACHSR-PVREGYG 364
Query: 307 CPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVT-PLCLNDPRNRSRST 365
C RC A+VC LP +C CGL L+ S HLARSYHHLFP+ + EV+ + R R
Sbjct: 365 CTRCGAKVCRLPAECPACGLTLILSTHLARSYHHLFPLRSWVEVSWTAAADAVRRRRAVA 424
Query: 366 CFGC----------------------QQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHE 403
C C SG AC C HFC++CD++ HE
Sbjct: 425 CHACLTPFPAVDTAAAAAAAVTAAAAATQTTGSGVSESGRYACEVCGHHFCIDCDVFAHE 484
Query: 404 SLHNCPGCES 413
+HNCPGC+S
Sbjct: 485 VIHNCPGCQS 494
>gi|150864125|ref|XP_001382831.2| hypothetical protein PICST_29472 [Scheffersomyces stipitis CBS
6054]
gi|149385381|gb|ABN64802.2| component of RNA polymerase transcription factor [Scheffersomyces
stipitis CBS 6054]
Length = 489
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 161/456 (35%), Positives = 243/456 (53%), Gaps = 83/456 (18%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYL 89
+WE Y RSW+ +++DESG R ++ + R++ + + T Q+G+IR L
Sbjct: 44 SWEDEYQ--RSWDIVKDDESGG-RSLETIVRTIIENRKK---KIMKNPTTPFQRGIIRTL 97
Query: 90 YIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
++ID S +E D RPSR ++ + ++ FV EFFDQNP+SQ+G++ +++GV+N ++++
Sbjct: 98 IVIIDGSATMSEKDLRPSRFSMTLQLLQDFVVEFFDQNPISQLGIILMRNGVSNLVSEVS 157
Query: 150 GSPESHIKALM-------GKLGCSGDSSLQNALDLVQGLL------SQIPSYGHREVLIL 196
GSP+ HI + + GD SLQN+L++ + LL + + +EVL++
Sbjct: 158 GSPQYHIDKIRQLKSRQHNRYEPKGDPSLQNSLEMARSLLKFNFGNNANDTKNSKEVLLI 217
Query: 197 YSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG--------GSYSVA 248
+ AL T DPGDI +TI + +I+ +IGLSA++ IC+ L T +Y V
Sbjct: 218 FGALFTSDPGDIHKTIDNLVKDEIKVKIIGLSAQVAICQDLVNRTNHQQKNISSKNYGVI 277
Query: 249 LDESHFKELIMEHAPPPP----AIAEFAIAN----LIKMGFPQRAGEGSISICSCHK--- 297
++ESHFKEL M+ P P + E A AN +IKMGFP + S + ++
Sbjct: 278 MNESHFKELFMDCVTPLPITTSQVNENAEANKGVPIIKMGFPTKIQPVLTSTLASNEYTI 337
Query: 298 --------------------EVKVG----------VGYTCPRCKARVCELPTDCRICGLQ 327
E+ G +GY CP+CK++VC LPT C +CGL
Sbjct: 338 EFPQLSASDPTHGLDDNQVVEINNGTDSSIQATNVIGYQCPQCKSKVCNLPTVCPVCGLM 397
Query: 328 LVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC----------QQSLLSSG 377
L+ S HLARSYHHL P+ PF EV P+ + CFGC +S S
Sbjct: 398 LILSTHLARSYHHLVPLVPFKEV-PVS----SKYNSKHCFGCLLKFPKGVSNTKSKSSLE 452
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 413
N C KC FC++CD++IHE+LHNCPGCE+
Sbjct: 453 NMTSSRYRCMKCSHDFCIDCDVFIHETLHNCPGCEN 488
>gi|255724012|ref|XP_002546935.1| suppressor of stem-loop protein 1 [Candida tropicalis MYA-3404]
gi|240134826|gb|EER34380.1| suppressor of stem-loop protein 1 [Candida tropicalis MYA-3404]
Length = 505
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 157/463 (33%), Positives = 241/463 (52%), Gaps = 92/463 (19%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRS---LVATTARIQKGLI 86
AWE Y RSW+ +++DESG S + A + + +R + + Q+G+I
Sbjct: 57 AWEDEY--QRSWDIVKDDESG-------SNSFEAMVQSIIENRKKKIMKNPSTPFQRGII 107
Query: 87 RYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLT 146
R L I+ID S +E D RP+R+++ ++ FV EFFDQNP+S++G++ +++G+AN ++
Sbjct: 108 RTLVIIIDGSSVMSEKDLRPNRLSMTLSYLQDFVTEFFDQNPISRLGIILMRNGIANLVS 167
Query: 147 DLGGSPESHIKALM-------GKLGCSGDSSLQNALDLVQGLL------SQIPSYGHREV 193
++ GSP+ HI + + GD SLQN+L++ + LL + + +EV
Sbjct: 168 EVSGSPQYHIDKIRQLKARQHNRFEPKGDPSLQNSLEMARSLLKFNFGSTSNNTKNSKEV 227
Query: 194 LILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS--------Y 245
LI++ AL T DPGDI TI + +I+ SVIGLSA++ IC+ L T Y
Sbjct: 228 LIIFGALFTSDPGDIHRTIDNLIKDEIKVSVIGLSAQVAICQELVNRTNKEPRNSQSKHY 287
Query: 246 SVALDESHFKELIMEHAPPPP----------AIAEFAIANLIKMGFPQRAGEGSISICS- 294
V ++ESHFKEL+M+ P P A +E +++MGFP + S+ +
Sbjct: 288 GVIMNESHFKELLMDSVTPLPLTESEKRLQDAQSEDGGVPVLRMGFPSKVQPTLTSVVTG 347
Query: 295 -----------------------------CHKEVKVG----VGYTCPRCKARVCELPTDC 321
++ V +GY CP+CK++VC LPT C
Sbjct: 348 TDMIIEFPHLNASFPTQGSEDSKDAVEIQNNRAVAAASSSVIGYQCPQCKSKVCNLPTLC 407
Query: 322 RICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL---LSSGN 378
+CGL L+ S HLARSYHHL P+A F EV + D CFGCQ + +G
Sbjct: 408 PVCGLMLILSTHLARSYHHLVPLAQFKEVPVAPVYDSE-----FCFGCQLKFPDGVKAGT 462
Query: 379 KPGLYVA-------CPKCKKHFCLECDIYIHESLHNCPGCESL 414
+ G + C +C+K FC+ CD+++HE LH CPGCE++
Sbjct: 463 QKGSLESMTSSRYRCKRCEKSFCINCDVFVHEVLHTCPGCENM 505
>gi|268573216|ref|XP_002641585.1| Hypothetical protein CBG09887 [Caenorhabditis briggsae]
Length = 376
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 159/396 (40%), Positives = 225/396 (56%), Gaps = 27/396 (6%)
Query: 21 DDNLNGGLEAWERSYADDRSW-EALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTA 79
DD+ G WE YA+ + E L EDE G + + A Y A +R+ R L
Sbjct: 2 DDDEQKGY-TWEAGYAEGLNINEVLVEDEGGSIE--KSIAKYVADSKRKAR---LTKRPE 55
Query: 80 RIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKD 139
+I+ G++R++ IVID SR PSR VV K ++ F+ FF+QNP++QIGL+T KD
Sbjct: 56 KIRLGIMRHVMIVIDCSRFMTSKAMPPSRFVVVMKALQQFLERFFEQNPIAQIGLITCKD 115
Query: 140 GVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILY 197
A+ LT + G+ ++L + + C GD SLQNAL L L +P + REV+I+
Sbjct: 116 RKADRLTMMTGNIRILKESLSSLTEAFCGGDFSLQNALQLACVNLKGMPGHVSREVVIVM 175
Query: 198 SALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKEL 257
+ALS+ DPG+I TI+ K IRCS IGLSAEMFICK + + T G YSVALD H L
Sbjct: 176 AALSSIDPGNIFSTIETMKRMNIRCSAIGLSAEMFICKEMAKATKGEYSVALDPDHLHLL 235
Query: 258 IMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVK-VGV-GYTCPRCKARVC 315
+H PP + A+ + N I +GFP + S C CH + K + + G+ C +C AR C
Sbjct: 236 FSKHTLPPSS-AKSSECNAIHVGFPHHELIKTRSFCVCHPDSKPISLRGFICTQCGARHC 294
Query: 316 ELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLS 375
+P +C +C L LV++P LAR++ HL P+A F ++ +R +C+ C+
Sbjct: 295 SIPAECPVCKLTLVAAPQLARAFRHLQPLAAFKQI---------EVTRGSCYACETRFSD 345
Query: 376 SGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
G + C KC+ FCL+CD +HESLH CPGC
Sbjct: 346 EGFR------CEKCRLVFCLDCDTLLHESLHVCPGC 375
>gi|443923297|gb|ELU42560.1| RNA polymerase II transcription factor [Rhizoctonia solani AG-1 IA]
Length = 877
Score = 268 bits (684), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 143/361 (39%), Positives = 213/361 (59%), Gaps = 33/361 (9%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYL 89
+WE +Y RSW+ +QEDE G N A R R + L+ ++ I++ +IR+L
Sbjct: 111 SWEANYV--RSWDQVQEDEGG------NLAHSVEDLIARKRRQRLLGPSSAIRRAIIRHL 162
Query: 90 YIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
++IDLS A A+ D RP+R + AFV E+ +QNPL QIG+V ++ G+ + ++
Sbjct: 163 VLLIDLSAAMADRDLRPTRFELALDCARAFVVEWCEQNPLGQIGVVGMRAGIGERIVEMT 222
Query: 150 GSPESHIKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 207
G+P ++A+ K L +G+ SLQNA+++ + + + E++I++ +L+TCDPGD
Sbjct: 223 GNPHDVLRAIADKRKLEPAGEPSLQNAIEVARAGMRHV-RLTREEIVIIFGSLTTCDPGD 281
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 267
I ET+ C + KIR S++ L+AEM ICK LC+ T GS+ VAL+E HFK+L+ EH PPP
Sbjct: 282 IYETLDSCVKDKIRISLVALAAEMKICKELCEKTEGSFGVALNEGHFKDLLFEHIPPPAH 341
Query: 268 IAEFA------------------IANLIKMGFPQRAGEGSI-SICSCHKEVKVGVGYTCP 308
A A+L+ MGFP R S ++C CH G+ CP
Sbjct: 342 RAARTGNDKIPSSQTGKANPLNPNADLMLMGFPTRLPPTSAPALCVCHPSRMRAEGFLCP 401
Query: 309 RCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFG 368
RC A++CE+PTDC +CGL +VSSPHLARSYHHLFP+ + + + P + +TC G
Sbjct: 402 RCSAKLCEVPTDCDVCGLMVVSSPHLARSYHHLFPVGAYTAINEI---GPDDTPSATCQG 458
Query: 369 C 369
C
Sbjct: 459 C 459
>gi|223999581|ref|XP_002289463.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220974671|gb|EED93000.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 422
Score = 267 bits (683), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 157/428 (36%), Positives = 231/428 (53%), Gaps = 57/428 (13%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRR---LRDRSLVATTARIQKGLIR 87
WE + W +QED G + ++ +Q R+R L L ++ R+ + ++R
Sbjct: 3 WE-AVDSSSMWTDVQEDADGNILLTSSTQSLASQIRQRRHRLASTDLARSSKRLVRHMLR 61
Query: 88 YLYIVIDLSRAAAEMD--FRPSRMAV--VAKQVEAFVREFFDQNPLSQIGLVTVKDGVAN 143
++Y+V+D SR + E D P+R+ + + FV E++DQNPL +G+V +DG A
Sbjct: 62 HVYLVLDASRWSREKDPALPPARLRLETIINLASEFVNEYYDQNPLGHLGVVICQDGEAE 121
Query: 144 CLTDLGGSPESHIKAL-------MGKLGCS--GDSSLQNALDLVQGLLSQIPSYGHREVL 194
LT LGGSP+ H AL M + G S G+ SLQN +++ L P YG RE++
Sbjct: 122 MLTTLGGSPKKHKLALGAALVTEMKRRGPSIGGEFSLQNGIEVAGRSLGYAPRYGSREII 181
Query: 195 ILYSALSTCDPGDIM-ETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESH 253
++ SAL+TCDPGDI+ ET+ + + IR S + L AE+ ICK L + TGG V +D H
Sbjct: 182 VITSALATCDPGDILGETLPRLLHAGIRVSAVSLQAELHICKKLAEVTGGLAGVCMDSRH 241
Query: 254 FKELIMEHAPPPPAIA-------------------EFAIANLIKMGFPQRAGEGSISICS 294
++L+M HA PPP + I + MGFP R + S
Sbjct: 242 LRDLVMGHAIPPPVVNTSKADDGETTTAHNGRNHNHTMICEFVTMGFPSRDDDRR----S 297
Query: 295 CHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVT-PL 353
GY CPRC++R +LP+DC +CGL+L+ +PHLAR++HHLFP+ PF+E+ L
Sbjct: 298 NRLIAFARTGYVCPRCRSRCSDLPSDCAVCGLRLILAPHLARTFHHLFPVRPFEELDEAL 357
Query: 354 CLNDPRNRSRSTCFGCQQSL----LSSGNKPG------LYVACPKCKKHFCLECDIYIHE 403
+N R CFGC + + + S + G L CP+C FC +CD Y+HE
Sbjct: 358 VINCDR-----CCFGCLKVIGCKPMDSTDGAGDEGESILRFQCPECHNAFCPDCDAYLHE 412
Query: 404 SLHNCPGC 411
+LHNCPGC
Sbjct: 413 TLHNCPGC 420
>gi|310796716|gb|EFQ32177.1| hypothetical protein GLRG_07321 [Glomerella graminicola M1.001]
Length = 482
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 163/424 (38%), Positives = 234/424 (55%), Gaps = 54/424 (12%)
Query: 39 RSWEALQEDESGFLRPIDNSAFYHAQYRRRL-RDRSLVATTARIQKGLIRYLYIVIDLSR 97
RSWE + E G L A A+ RRRL RD T +Q+G+IR+L +V+D+S
Sbjct: 48 RSWEEVTEGADGSLAV---GASLEAEKRRRLLRD------TTPLQRGIIRHLVLVLDMSF 98
Query: 98 AAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIK 157
A AE D P+R V FV+E+F+QNP+SQ+G++ ++DGVA ++D+ G+P H++
Sbjct: 99 AMAEKDMLPNRYRVAWAYAADFVKEYFEQNPISQLGIIGMRDGVAIRISDMSGNPTDHLE 158
Query: 158 ALMGKLGC--SGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKC 215
L G SG+ SLQNAL++ +G L PS+G REVLI++ AL + DPGDI +TI
Sbjct: 159 KLKTFEGQDPSGNPSLQNALEMCRGALFHAPSHGTREVLIVFGALLSSDPGDIHDTISSL 218
Query: 216 KESKIRCSVIGLSAEMFICKHLCQDTGGS----YSVALDESHFKELIMEHAPPPPAIAEF 271
+IR S++GL+A++ IC LC T YSV ++++HF++L++ PP
Sbjct: 219 ITDRIRVSIVGLAAQVAICAELCSRTNAGDETQYSVCMNDAHFRDLLLATTTPPVTRTVA 278
Query: 272 -AIANLIKMGFPQRA---GEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQ 327
+ A+L+ MGFP R GE + ++C+CH + GY C RC RVC LP +C C L
Sbjct: 279 QSTASLLMMGFPSRTLAQGEAT-AVCACHNK-PAREGYLCTRCGTRVCRLPIECPACSLT 336
Query: 328 LVSSPHLARSYHHLFPIAPFDEVTPL----------CLND----PRNRSRSTCFG----- 368
L+ S HLARSYHHLFP+ + EV+ CL P+ R
Sbjct: 337 LILSTHLARSYHHLFPLRNWIEVSWAEAAKSKACYSCLTTFPEPPKTGRRKDKDKDKEKD 396
Query: 369 ------------CQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLRH 416
S L ++ G Y +C C HFC++CD+Y HE +HNCPGC+S
Sbjct: 397 GLHTTAPVAPTPVTASDLKGVSESGRY-SCTVCGNHFCIDCDVYAHEVIHNCPGCQSDTR 455
Query: 417 SNPI 420
P+
Sbjct: 456 GAPM 459
>gi|294654358|ref|XP_456408.2| DEHA2A01606p [Debaryomyces hansenii CBS767]
gi|199428818|emb|CAG84360.2| DEHA2A01606p [Debaryomyces hansenii CBS767]
Length = 514
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 162/489 (33%), Positives = 257/489 (52%), Gaps = 94/489 (19%)
Query: 4 SERKRLNGEAEEEEEDEDDNL---NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAF 60
S+R R +G + +L NGG AWE Y R W+ +++DE G R ++
Sbjct: 40 SKRTRSSGMTHQPRSGAVGDLKSSNGGY-AWEDEYQ--RPWDIVKDDEDG--RSLETIIQ 94
Query: 61 YHAQYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFV 120
+ R++ + + T Q+G+IR L ++ID S +E D RP+R +++ ++ FV
Sbjct: 95 TMIENRKK---KIMRNPTTPFQRGIIRTLVVIIDGSSVMSEKDLRPTRFSMMLSLLQEFV 151
Query: 121 REFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALM-------GKLGCSGDSSLQN 173
E+FDQNP+SQ+G++ +++GV+N ++++ GSP+ H+ + K GD SLQN
Sbjct: 152 VEYFDQNPISQLGIIMMRNGVSNLISEVNGSPQYHLDKIRQLKSRQHNKYEPKGDPSLQN 211
Query: 174 ALDLVQGLLSQIPSYG--------HREVLILYSALSTCDPGDIMETIQKCKESKIRCSVI 225
AL++ + LL + ++G +E+LI++ AL T DPGDI +TI + +I+ VI
Sbjct: 212 ALEMARSLL--MYNFGTNLNDTKNSKEILIIFGALFTSDPGDIHKTINSLVKDEIKVKVI 269
Query: 226 GLSAEMFICKHLCQDT-------------GGSYSVALDESHFKELIMEHAPPPPAIAEFA 272
GLSA++ IC+ L T G +Y V ++E HF+EL+M+ P P
Sbjct: 270 GLSAQVAICQELVNKTNNPGKSNTFWSAGGNNYGVIMNEIHFRELLMDCVIPLPVTTNAV 329
Query: 273 I-------ANLIKMGFPQR------AGEGSISI-----CSCHKE---------------- 298
I +IKMGFP + + ++S+ C+CH
Sbjct: 330 IDENNSKEVPIIKMGFPSKIQPVITSSTSNLSVDFPQLCACHPTQDSLESKNNDPTATLG 389
Query: 299 VKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDP 358
+ +GY CP+C +VC LPT C ICGL L+ S HLARSYHHL P+ + EV P+
Sbjct: 390 TRSVIGYECPQCNNKVCHLPTICPICGLMLILSTHLARSYHHLVPLGDYKEV-PVS---- 444
Query: 359 RNRSRSTCFGC--------QQSLLSSGNKPGL------YVACPKCKKHFCLECDIYIHES 404
+ S + C+GC + + ++ K + C KC+ FC++CD+++HES
Sbjct: 445 ESYSSTYCYGCLLKFPSGIKNTDVNEDGKTKMDSLTSSRYRCGKCQNDFCIDCDVFVHES 504
Query: 405 LHNCPGCES 413
LHNCPGCE+
Sbjct: 505 LHNCPGCEN 513
>gi|146414033|ref|XP_001482987.1| hypothetical protein PGUG_04942 [Meyerozyma guilliermondii ATCC
6260]
Length = 488
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 156/451 (34%), Positives = 244/451 (54%), Gaps = 76/451 (16%)
Query: 27 GLEAWERSYADDRSWEALQ-EDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGL 85
G +WE Y R W+ ++ EDE+G + ++N + R++ + + T Q+G+
Sbjct: 46 GGYSWEDRYK--RPWDIVKDEDEAG--QSLENVIQTMIENRKK---KIMKNPTTPFQRGI 98
Query: 86 IRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 145
IR L ++ID S E D RP+R A+ + ++ F+ EFFDQNP+SQ+G+V +++GV+N +
Sbjct: 99 IRTLIVIIDGSLTMLEKDLRPNRFAMTLQLLQEFIVEFFDQNPISQLGIVMMRNGVSNLV 158
Query: 146 TDLGGSPESHIKALM-------GKLGCSGDSSLQNALDLVQGLL------SQIPSYGHRE 192
+++ G P+ HI L + GD LQN+L++ + +L + + +E
Sbjct: 159 SEVNGLPQYHIDKLRLLRSRQHNRFEPKGDPLLQNSLEMARAMLKYNFGTNMDDNKNSKE 218
Query: 193 VLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDT----------- 241
VLIL+ AL T DPGDI +TI + +I+ +IGLSA++ IC+ + T
Sbjct: 219 VLILFGALFTSDPGDIHKTIDNLIKDEIKVKIIGLSAQVSICQQIANKTNNLGSRTTGAN 278
Query: 242 ---GGSYSVALDESHFKELIMEHAPPPPAIAEFAIAN----LIKMGFPQR------AGEG 288
G +YSV ++E+H++EL+M+ P P A + LIKMGFP + A
Sbjct: 279 SSSGSNYSVIMNETHYRELLMDCVVPLPVAATEKRSTVGVPLIKMGFPLKVLPPISASNN 338
Query: 289 SIS-----ICSCH---------KEVKVG-------VGYTCPRCKARVCELPTDCRICGLQ 327
+++ +C+CH V +G +GY CP+C++RVC LPT C CGL
Sbjct: 339 TVNLDLPVLCACHPTNGSLESKDAVTIGAESSTSIIGYQCPQCRSRVCHLPTICPTCGLM 398
Query: 328 LVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVA-- 385
L+ S HLARSYHHL P+ + EV + + C+GC +G G A
Sbjct: 399 LILSTHLARSYHHLVPLREYKEVPA-----ADHYEGTHCYGCLLKFPEAGGPDGPLRASS 453
Query: 386 ---CPKCKKHFCLECDIYIHESLHNCPGCES 413
CP C + FC++CD+++HE+LHNCPGCES
Sbjct: 454 RYRCPTCARDFCIDCDVFVHETLHNCPGCES 484
>gi|358340016|dbj|GAA47968.1| transcription initiation factor TFIIH subunit 2 [Clonorchis
sinensis]
Length = 929
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 144/364 (39%), Positives = 211/364 (57%), Gaps = 27/364 (7%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFY--HAQYRRRLRDRSLVATTARIQKGLIRY 88
WE Y +++W A++ED++G L + H+Q R++ R R+ V T ++ G++R+
Sbjct: 535 WESGY--EKTWNAIREDDAGRLVTTLEQLVHDAHSQLRKK-RHRAAVGTEGFVRLGMMRH 591
Query: 89 LYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL 148
L+++ID+S A D +P+R+ + V FVR++FDQNP+SQ+G++ D A LT+L
Sbjct: 592 LFLIIDMSSAMQVQDLKPTRLVCTLRAVAEFVRDYFDQNPISQLGIIVTADRQAERLTEL 651
Query: 149 GGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPG 206
G+P H+ AL + CSG+ SLQNAL L + L P H E+L++ ++L+TCDPG
Sbjct: 652 SGNPRCHLAALETLFTRPCSGEPSLQNALTLAESRLKYTPH--HSEILVIMASLTTCDPG 709
Query: 207 DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPP 266
DI +TIQ + IRCSV+ L+ E+F+ + L Q T G + V LDE H K ++ PPP
Sbjct: 710 DIHKTIQSLAANHIRCSVVSLAVEVFVYRALAQITQGQFHVILDEPHLKTVLKNFVPPPA 769
Query: 267 AIAEFAIANLIKMGFPQRAG----EGSISICSCHKEVKVGVG------YTCPRCKARVCE 316
A + A A LI+M FP S +C CH + Y CPRC A CE
Sbjct: 770 ATVD-APATLIRMAFPHSETFDLRNFSTVLCMCHLNQQGSSTDSSHPQYACPRCCAAYCE 828
Query: 317 LPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCL--NDPRNRSRS-----TCFGC 369
LP +C +CGL LV++PHLAR+YHHLFP+ F ++P L +P R+ TC GC
Sbjct: 829 LPVECTVCGLTLVAAPHLARAYHHLFPLDAFTPISPAELRQTNPDQLPRTETGIITCAGC 888
Query: 370 QQSL 373
L
Sbjct: 889 DVVL 892
>gi|219116518|ref|XP_002179054.1| suppressor of stem-loop protein 1 [Phaeodactylum tricornutum CCAP
1055/1]
gi|217409821|gb|EEC49752.1| suppressor of stem-loop protein 1 [Phaeodactylum tricornutum CCAP
1055/1]
Length = 413
Score = 264 bits (674), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 146/400 (36%), Positives = 229/400 (57%), Gaps = 29/400 (7%)
Query: 29 EAWERSYADDRSWEALQEDESGFLRPIDNSAFYHA--QYRRRLRDRSLVATTARIQKGLI 86
AWE + + + +A++ED +G + A + R+RL R+ + +I
Sbjct: 23 HAWEDNRSQNAWDQAVREDATGRIVVASGDTLAQAIRKRRKRLTQNDYAQRNRRVVRDMI 82
Query: 87 RYLYIVIDLSRAAAEMD--FRP-SRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVAN 143
RY+Y++ID+SR D P +R+ V ++ FV+E++DQNPLSQ+G V +K+G A
Sbjct: 83 RYVYVLIDVSRWMRVKDPVLPPGTRIDVTVAHLQHFVQEYYDQNPLSQLGFVLLKNGEAE 142
Query: 144 CLTDLGGSPESHIKAL--MGKLGCS------GDSSLQNALDLVQGLLSQIPSYGHREVLI 195
LT L S ++H AL + ++ + G+ SLQN L+L L PS+G RE+++
Sbjct: 143 ILTQLSSSSKTHKLALDSVAQMAAAEGPSGGGEFSLQNGLELAGRSLGHQPSHGSREIVL 202
Query: 196 LYSALSTCDPGDIM-ETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHF 254
+ +ALSTCDPG ++ ET+ + ++++IR S + L+AE+ +C+ L +T G V LD +H
Sbjct: 203 VTAALSTCDPGYLLTETLPRLRQAQIRVSCLALNAELHVCRKLADETHGVLGVCLDRAHL 262
Query: 255 KELIMEHAPPPPAIAEFAIA-NLIKMGFPQRA-GEGSISICSCHKEVKVG-VGYTCPRCK 311
++ + PPP + L++MGFP R +G + + ++ + YTCP C+
Sbjct: 263 RDWLRSQTVPPPTLPSRPHGCALVRMGFPTRIIADGPEFVHATRQQTVLARTAYTCPVCQ 322
Query: 312 ARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQ 371
A+ LP DC +CGLQLV +PHLARS+HHLFP+ PF EV P + Q
Sbjct: 323 AKNAALPADCAVCGLQLVLAPHLARSFHHLFPVPPFREVQP---------DTAVVSNSQV 373
Query: 372 SLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
+++S L ACP C + FC++CD ++HESLHNCPGC
Sbjct: 374 PVVASRQ---LRFACPDCHQVFCVDCDAFLHESLHNCPGC 410
>gi|448096877|ref|XP_004198537.1| Piso0_001913 [Millerozyma farinosa CBS 7064]
gi|359379959|emb|CCE82200.1| Piso0_001913 [Millerozyma farinosa CBS 7064]
Length = 514
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 158/460 (34%), Positives = 240/460 (52%), Gaps = 83/460 (18%)
Query: 25 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVAT-TARIQK 83
N G +WE Y R+W+ +++D+ G S Q R + ++ + Q+
Sbjct: 66 NSGGYSWEDEYQ--RTWDIVKDDDDGV-----GSLQTLVQTLIESRKKKIMKNPSTPFQR 118
Query: 84 GLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVAN 143
G+IR + ++ID S E D RP+R +++ ++ F+ EFFDQNP+SQ+G+V +++G+A
Sbjct: 119 GIIRTMIVIIDGSEVMLERDLRPTRFSMMLSLLQEFILEFFDQNPISQMGIVMMRNGIAI 178
Query: 144 CLTDLGGSPESHIKALM-------GKLGCSGDSSLQNALDLVQGLL------SQIPSYGH 190
++D+ GSP+ HI + + GD SLQN+L+L + LL +
Sbjct: 179 RISDVSGSPQYHIDKIRQLKTKQHNRFEPKGDPSLQNSLELARSLLMYNFNNKVNDTQNS 238
Query: 191 REVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS------ 244
+E+LI++ AL T DPG+I +TI + I+ +IGL+A++ IC+ + + T S
Sbjct: 239 KEILIIFGALFTSDPGNIHKTIDNLVKDDIKIKIIGLAAQVAICEEIVRRTNSSKTSSSY 298
Query: 245 ----YSVALDESHFKELIMEHAPPPPAIAEFAIAN-----LIKMGFPQR-----AGEGSI 290
Y V ++ESHFKEL+M+ P P +F LIKMGFP + SI
Sbjct: 299 INTNYGVIMNESHFKELLMDCVIPLPVSEDFEKKEKKGVPLIKMGFPSKIQPSVTSNSSI 358
Query: 291 -----SICSCH----------KEV----------KVGVGYTCPRCKARVCELPTDCRICG 325
SICSCH KE K +GY CP+C +VC+LPT C ICG
Sbjct: 359 NLNLPSICSCHPDEENDASHSKEAGEAGNGTYSSKKVIGYKCPQCLNKVCQLPTICPICG 418
Query: 326 LQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC--------QQSLLSSG 377
L L+ S HLARSYHHL P+ + EV + + C+GC + +
Sbjct: 419 LMLILSTHLARSYHHLVPLEAYKEVPTM-----EEYESTYCYGCLLKFPSGRKNAQSDDA 473
Query: 378 NKPGLYVA----CPKCKKHFCLECDIYIHESLHNCPGCES 413
NK + C KC++ FC++CD++IHE+LHNCPGCE+
Sbjct: 474 NKIESLTSSRYRCGKCQQDFCIDCDVFIHETLHNCPGCEN 513
>gi|367035208|ref|XP_003666886.1| hypothetical protein MYCTH_2311995 [Myceliophthora thermophila ATCC
42464]
gi|347014159|gb|AEO61641.1| hypothetical protein MYCTH_2311995 [Myceliophthora thermophila ATCC
42464]
Length = 589
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 159/400 (39%), Positives = 221/400 (55%), Gaps = 53/400 (13%)
Query: 2 TNSERKRLNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFY 61
T S+ R NG++ + + AWE RSWE + E E G I A
Sbjct: 32 TRSKGGRANGKSGDGRKGARSK-----AAWEDI---KRSWENVVETEDG---SITIEALI 80
Query: 62 HAQYRRRL-RDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFV 120
A+ RRRL RD T Q+G+IR+L +V+D+S A AE D P+R + FV
Sbjct: 81 EAEKRRRLMRD------TTPFQRGIIRHLMLVLDMSFAMAEKDLLPNRYLLTLNYAVDFV 134
Query: 121 REFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMG---KLGCSGDSSLQNALDL 177
RE+F+QNP+SQ+G+V ++DG+A ++D+GG+P HI+ L + G+ SLQNAL++
Sbjct: 135 REYFEQNPISQLGIVGMRDGIAVRISDMGGNPAEHIEKLRTWAEQQEPQGNPSLQNALEM 194
Query: 178 VQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHL 237
+G L PS+G REVLI+Y AL + DPGDI +TI K +IR SV+GL+A++ IC+ L
Sbjct: 195 CRGALFHTPSHGTREVLIIYGALLSSDPGDIHDTIAKLLNDRIRVSVVGLAAQVAICEQL 254
Query: 238 CQDTGG----SYSVALDESHFKEL--------IMEHAPPPPAIAE--------------F 271
C T G SY+VAL E HF+EL + + PPPP +
Sbjct: 255 CTRTNGGDPSSYAVALHEQHFRELFLAATTPPVTQSTPPPPGAGDGTNNNNNSQQQSQQS 314
Query: 272 AIANLIKMGFPQR--AGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLV 329
A+L+ MGFP R A + +S+C+CH GY C RC+ +VC LP +C +CGL LV
Sbjct: 315 QQASLLIMGFPSRALASKDHVSLCACHNR-PTREGYACTRCRTKVCRLPAECPVCGLTLV 373
Query: 330 SSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC 369
S HLARSYHHLFP+ + V+ + CF C
Sbjct: 374 LSTHLARSYHHLFPLRGWVAVS---WAEAARAKSGVCFAC 410
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 24/29 (82%)
Query: 385 ACPKCKKHFCLECDIYIHESLHNCPGCES 413
ACP C HFC++CD++ HE +HNCPGC+S
Sbjct: 486 ACPVCGNHFCIDCDVFAHEMIHNCPGCQS 514
>gi|448110898|ref|XP_004201714.1| Piso0_001913 [Millerozyma farinosa CBS 7064]
gi|359464703|emb|CCE88408.1| Piso0_001913 [Millerozyma farinosa CBS 7064]
Length = 514
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 160/466 (34%), Positives = 240/466 (51%), Gaps = 95/466 (20%)
Query: 25 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVAT-TARIQK 83
N G +WE Y R+W+ +++D+ G S Q R + ++ + Q+
Sbjct: 66 NSGGYSWEDEYQ--RTWDIVKDDDDGV-----GSLQTLVQTLIESRKKKIMKNPSTPFQR 118
Query: 84 GLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVAN 143
G+IR + ++ID S E D RP+R +++ ++ F+ EFFDQNP+SQ+G+V +++G+A
Sbjct: 119 GIIRTMIVIIDGSEVMLERDLRPTRFSMMLSLLQEFILEFFDQNPISQMGIVMMRNGIAV 178
Query: 144 CLTDLGGSPESHIKALM-------GKLGCSGDSSLQNALDLVQGLL------SQIPSYGH 190
++D+ GSP+ HI + + GD SLQN+L+L + LL +
Sbjct: 179 RISDVSGSPQYHIDKIRQLKTKQHNRFEPKGDPSLQNSLELARSLLMYNFNNKVNDTQNS 238
Query: 191 REVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS------ 244
+E+LI++ AL T DPG+I +TI + I+ +IGL+A++ IC+ + + T S
Sbjct: 239 KEILIIFGALFTSDPGNIHKTIDNLVKDDIKVKIIGLAAQVAICEEIVRRTNSSKTSSSY 298
Query: 245 ----YSVALDESHFKELIMEHAPPPPAIAEFAIAN-----LIKMGFPQR-----AGEGSI 290
Y V ++ESHFKEL+M+ P P +F LIKMGFP + SI
Sbjct: 299 INTNYGVIMNESHFKELLMDCVIPLPVSEDFEKKEKKGVPLIKMGFPSKIQPSITSNSSI 358
Query: 291 -----SICSCH----------KEV----------KVGVGYTCPRCKARVCELPTDCRICG 325
SICSCH KE K +GY CP+C +VC+LPT C ICG
Sbjct: 359 NLNLPSICSCHPDEENESSHSKEAGEAGNGTYSSKKVIGYKCPQCLNKVCQLPTICPICG 418
Query: 326 LQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQ--------------- 370
L L+ S HLARSYHHL P+ + EV + C+GC
Sbjct: 419 LMLILSTHLARSYHHLVPLEAYREVPTM-----EEYESIYCYGCLLKFPPGRKNAESDET 473
Query: 371 ---QSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 413
+SL SS + C KC++ FC++CD++IHE+LHNCPGCE+
Sbjct: 474 NKIESLTSSRYR------CGKCQQDFCIDCDVFIHETLHNCPGCEN 513
>gi|432876344|ref|XP_004073002.1| PREDICTED: LOW QUALITY PROTEIN: general transcription factor IIH
subunit 2-like [Oryzias latipes]
Length = 340
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 154/387 (39%), Positives = 214/387 (55%), Gaps = 70/387 (18%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + ++ RR +V + +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEVLKEDESGSLKATVEDILFQSKRRR------VVESHGQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVT--VKDGVANCLT-- 146
+V+D SR+ + D +P+R+A K +E FV E+FDQNP+SQ+G + + D L
Sbjct: 63 VVVDCSRSMEDQDLKPNRLAATLKLLEGFVDEYFDQNPISQVGKXSSYLIDDHRRALNTG 122
Query: 147 DLGGSPESHIKALMGKL--GCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCD 204
+ G+P+ HI AL + C G+ SL NAL+L L +P + REVLI+ S+L+TCD
Sbjct: 123 EASGNPKKHITALKKAVDSACVGEPSLYNALNLAVQTLKHMPGHTSREVLIILSSLTTCD 182
Query: 205 PGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPP 264
P +I + IQ K K+R SVIGLSAE+ +C L ++TGGSY V LDESHFKEL+M H P
Sbjct: 183 PANIYDLIQTLKGLKVRVSVIGLSAEVRVCTVLTRETGGSYHVILDESHFKELLMLHVKP 242
Query: 265 PPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRIC 324
PPA + + +LI+MG
Sbjct: 243 PPA-SSSSECSLIRMG-------------------------------------------- 257
Query: 325 GLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYV 384
L LVS+PHLARS+HHLFP+ PF E + L R C GCQ L YV
Sbjct: 258 -LTLVSAPHLARSFHHLFPMVPFLESSVEELQGSR-----FCEGCQGEL----RDKSAYV 307
Query: 385 ACPKCKKHFCLECDIYIHESLHNCPGC 411
CP C+ FC+ECD++IH+SLH CP C
Sbjct: 308 -CPSCRGVFCVECDLFIHDSLHCCPCC 333
>gi|171689514|ref|XP_001909697.1| hypothetical protein [Podospora anserina S mat+]
gi|170944719|emb|CAP70830.1| unnamed protein product [Podospora anserina S mat+]
Length = 501
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 166/450 (36%), Positives = 231/450 (51%), Gaps = 88/450 (19%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRL-RDRSLVATTARIQKGLIRY 88
AWE + R+W+ + E G I + A+ RRRL RD T IQ+G+IR+
Sbjct: 46 AWEEVH---RAWDEVAIAEDG---SITVAELIEAEKRRRLMRD------TTPIQRGIIRH 93
Query: 89 LYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL 148
+ +V+D+S A AE D P+R A+ FV FF QNP+SQ+G++ ++DG+A ++D+
Sbjct: 94 MVLVLDMSIAMAEKDLLPNRFALTFSYAMEFVNTFFQQNPISQLGIIGMRDGIAVRISDM 153
Query: 149 GGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPG 206
G+P HI+ L G+ SLQNAL++ +G L PS+G REVLI+Y AL + DPG
Sbjct: 154 SGNPVEHIEKLRQWALKDPIGNPSLQNALEMCRGHLYHTPSHGTREVLIIYGALLSSDPG 213
Query: 207 DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELIMEHA 262
DI +TI +IR S+IGL+A++ IC LC T Y +AL E HF+EL +
Sbjct: 214 DISDTITSLIADRIRVSIIGLAAQVAICAELCARTNDNDDSQYRIALHEQHFRELFLAAT 273
Query: 263 PPPPAI-AEFAIANLIKMGFPQR--AGEGSISICSCHKEVKVGVGYTCPRCKARVCELPT 319
PP AE + A+L+ MGFP R A + +S+C+CH + GYTC RC+ +VC LP
Sbjct: 274 TPPVTHEAEQSNASLLMMGFPSRSLASKDFVSLCACHNK-PTREGYTCTRCRIKVCRLPA 332
Query: 320 DCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRST--CFGCQQSLL--- 374
C +CGL L+ S HLARSYHHLFP+ + V P ++ + CF CQ
Sbjct: 333 SCPVCGLTLILSIHLARSYHHLFPLKSWVAV-------PWTEAKKSVACFSCQTPFPPVP 385
Query: 375 -------------SSG---------------------------NKPGLY-----VACPKC 389
SSG PGL +
Sbjct: 386 KAAPPKIKLKVKESSGVGGQTAANIAKAKGRGEVPAKTNTVTAPTPGLLPEAIKAGVSES 445
Query: 390 KKHFCLEC--------DIYIHESLHNCPGC 411
++ C EC DIY HE++HNCPGC
Sbjct: 446 GRYKCPECEEHFCIDCDIYAHETIHNCPGC 475
>gi|258571509|ref|XP_002544558.1| suppressor of stem-loop protein 1 [Uncinocarpus reesii 1704]
gi|237904828|gb|EEP79229.1| suppressor of stem-loop protein 1 [Uncinocarpus reesii 1704]
Length = 413
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 133/303 (43%), Positives = 189/303 (62%), Gaps = 13/303 (4%)
Query: 74 LVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIG 133
L+ T +Q+G+IR+L +V+DLS A E D RP+R + + + FV E+F+QNP+SQ+G
Sbjct: 56 LLRDTTPLQRGIIRHLILVLDLSIAMTEKDLRPTRYLLTLRFAQEFVLEYFEQNPISQLG 115
Query: 134 LVTVKDGVANCLTDLGGSPESHIKALMGKLG--CSGDSSLQNALDLVQGLLSQIPSYGHR 191
++ ++DG+A ++D+ G+P HI AL +G SLQNAL++ +G L PS+G R
Sbjct: 116 IIGMRDGLAVKISDMSGNPTEHILALQALRAKDPNGLPSLQNALEMARGTLFHTPSHGTR 175
Query: 192 EVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGG----SYSV 247
EVLIL+ AL + DPGDI +T+ KIR V+GL+AE+ IC+ +C T Y V
Sbjct: 176 EVLILFGALLSSDPGDIHQTVSSLISDKIRVGVVGLAAEVAICREICAKTNAGDDSGYGV 235
Query: 248 ALDESHFKELIMEHAPPPPAIAEFAIAN-LIKMGFPQRAGEGSISICSCHKEVKVGVGYT 306
AL+E HF+EL+ME PP ++ AN L+ MGFP R E + S+C+CH G GY
Sbjct: 236 ALNEQHFRELMMETTTPPVTYSKKQAANSLLMMGFPSRTVEPAPSMCACHSMPSRG-GYL 294
Query: 307 CPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTC 366
C RC ++VC LP +C CGL L+ S HLARSYHHLFP+ + EV + + + C
Sbjct: 295 CSRCGSKVCTLPAECPACGLTLILSTHLARSYHHLFPLINWIEVP-----WKKASTSANC 349
Query: 367 FGC 369
F C
Sbjct: 350 FAC 352
>gi|297603026|ref|NP_001053274.2| Os04g0508900 [Oryza sativa Japonica Group]
gi|255675611|dbj|BAF15188.2| Os04g0508900, partial [Oryza sativa Japonica Group]
Length = 173
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 118/154 (76%), Positives = 141/154 (91%)
Query: 98 AAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIK 157
AA+EMD+RPSRMAVVAK E F+REFFDQNPLS +G+VT+KDG+++ LT++GGSPES IK
Sbjct: 1 AASEMDYRPSRMAVVAKYAEVFIREFFDQNPLSHVGIVTMKDGISHRLTEIGGSPESQIK 60
Query: 158 ALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKE 217
ALMGKL CSG+ SLQNAL+LV G L Q+PSYGH+EVL LYSAL+TCDPGDIMETI KCK+
Sbjct: 61 ALMGKLECSGEPSLQNALELVHGYLDQVPSYGHKEVLFLYSALNTCDPGDIMETIAKCKK 120
Query: 218 SKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDE 251
SKIRCSVIGL+AE+FICK+LC++TGGSY+VALDE
Sbjct: 121 SKIRCSVIGLAAEIFICKYLCEETGGSYTVALDE 154
>gi|225678604|gb|EEH16888.1| TFIIH basal transcription factor complex p44 subunit
[Paracoccidioides brasiliensis Pb03]
Length = 493
Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 145/365 (39%), Positives = 198/365 (54%), Gaps = 33/365 (9%)
Query: 26 GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGL 85
GG E WE S R+WE L E G +R + RR LRD T +Q+G+
Sbjct: 55 GGAE-WEVS----RTWETLVEGADGTIRATVEGLLEAGKRRRVLRD------TTPLQRGI 103
Query: 86 IRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 145
IR+L +++DLS A +E D RP+R + + + FVREFFDQNP+SQ+G+V ++DG+A +
Sbjct: 104 IRHLILILDLSSAMSEKDLRPTRYLLTLRYAQDFVREFFDQNPISQLGVVGMRDGLAVRI 163
Query: 146 TDLGGSPESHIKALMGKLG--CSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTC 203
+D+ G+P HI A+ G G SLQNAL++ +G L PS+G REVLI+Y AL +
Sbjct: 164 SDMSGNPTEHILAIQGLRAKDPKGMPSLQNALEMARGALFHTPSHGTREVLIIYGALLSS 223
Query: 204 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGG----SYSVALDESHFKELIM 259
DPGDI +TI KI V+GL+A++ IC+ L T Y+VA++E HF+EL++
Sbjct: 224 DPGDIHKTITSLITDKIHVYVLGLAAQVSICQELVTRTNNGDDSGYNVAMNEQHFRELVL 283
Query: 260 EHAPPPPAIAEFAI---------------ANLIKMGFPQRAGEGSISICSCHKEVKVGVG 304
PP L+ MGFP R ++C+CH G
Sbjct: 284 NVTTPPATTLASHTAAAAANGTGTNPSTDGTLLPMGFPNRHLTPHPTLCACHSTPSRS-G 342
Query: 305 YTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRS 364
Y CPRC +VC LP C C L L+ S HLARSYHHLFP+ + EV+ R
Sbjct: 343 YLCPRCCTKVCTLPASCPSCNLTLILSTHLARSYHHLFPLMNWVEVSWRKAARAEAEGRV 402
Query: 365 TCFGC 369
CF C
Sbjct: 403 GCFAC 407
>gi|326433104|gb|EGD78674.1| hypothetical protein PTSG_01653 [Salpingoeca sp. ATCC 50818]
Length = 394
Score = 254 bits (649), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 141/380 (37%), Positives = 229/380 (60%), Gaps = 27/380 (7%)
Query: 41 WEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRAAA 100
W+ ++E E G L + +A H + R+R +L ++G+IR++Y+V+DLS+
Sbjct: 13 WDEVREGEDGTLCIDEITAQTHTRVRKR---HALAPQLGPCKRGMIRHVYLVVDLSQDMD 69
Query: 101 EMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPE---SHIK 157
+ D +P+R+ + FV FF +NP+S +G++ +++GVA + +L G+ + H+
Sbjct: 70 DDDLKPNRLTCTVHNLIDFVHSFFHENPISDMGVIVMREGVARVICELNGNKDVLVEHLS 129
Query: 158 ALM---GKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 214
AL+ L +G++SLQNAL + + L IPS+ REV+I+ + L++CDPG+I++TI+
Sbjct: 130 ALLHPKTPLFPAGEASLQNALAVARRSLRSIPSHATREVVIVQATLASCDPGNILDTIKS 189
Query: 215 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 274
+ K+ +V+GL+A + IC+ +C++TGG ++VALDE H EL++ PP A A+
Sbjct: 190 LRSDKVTVNVVGLAAAVRICETVCKETGGIHAVALDEDHLGELLLALTTPPAAPADADAT 249
Query: 275 NLIKMGFPQRAGEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRICGLQLVSS 331
+ ++GF A EG K+ ++G+ GY CP+C+A+V ++P C CGL LVSS
Sbjct: 250 QM-RLGFA--AYEGRRPTVRRQKDGQLGITTGGYVCPQCRAKVSDIPQRCTTCGLMLVSS 306
Query: 332 PHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKK 391
PHLA+++HH+FP+ F EVT + C GC Q L ++ P CP C
Sbjct: 307 PHLAKTFHHMFPLPVFKEVT--------LAAAEWCAGCTQPLPTT--LPAY--ECPSCGA 354
Query: 392 HFCLECDIYIHESLHNCPGC 411
CL+CD+Y+H LHNCPGC
Sbjct: 355 RVCLDCDVYVHRELHNCPGC 374
>gi|428671746|gb|EKX72661.1| conserved hypothetical protein [Babesia equi]
Length = 409
Score = 253 bits (647), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 148/401 (36%), Positives = 215/401 (53%), Gaps = 36/401 (8%)
Query: 19 DEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATT 78
DE D AWE+ DRSWE L D+ G L+ F Q R + S + +T
Sbjct: 27 DERDEETYAQYAWEKDV--DRSWEQLV-DKDGVLQ------FVEPQSRCLTTNESQLGST 77
Query: 79 ARIQKGLIRY------LYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQI 132
KGLIR L I+ D+S EMDF+P R+ V+ FV+E F Q P++QI
Sbjct: 78 VLRDKGLIRKRGIIRNLVIIFDMSDRMHEMDFKPDRLYCAFGAVKEFVKELFHQGPITQI 137
Query: 133 GLVTVKDGVANCLTDLGGSPESHIKALMGKL--GCSGDSSLQNALDLVQGLLSQIPSYGH 190
GL+ +++ V+ ++ LG +P+ I+ L L G SG +SLQN L++ +LS +PSY
Sbjct: 138 GLIGLRNKVSTMISQLGTNPDEQIELLGNALKEGPSGTASLQNGLEMALTILSTLPSYTT 197
Query: 191 REVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALD 250
REVLI++ + T DPG+I+ T+ K KE+ I + I L+ E++I K++C +TGG SVA+D
Sbjct: 198 REVLIIFGSNRTLDPGNILATLYKLKENHICVNAISLAPELYILKNICTETGGMCSVAMD 257
Query: 251 ESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRC 310
+H + L+ + PPP + L K+ FP + S+C+CH + Y CP+C
Sbjct: 258 AAHLRTLLNDFTIPPPW-HNWMEPVLTKVAFPPLKKTTTASLCACHSNL-THTAYICPQC 315
Query: 311 KARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQ 370
++ C +PT CR CG+ LVS P ++R+++HL P F + D R TC
Sbjct: 316 HSKSCSIPTRCRCCGIYLVSPPDISRAFYHLIPPKTF-------IKDSRTGRCDTC---- 364
Query: 371 QSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
S+G+ CP C FC CD YIH LH CP C
Sbjct: 365 NYETSNGS------TCPDCASFFCEYCDAYIHNELHQCPHC 399
>gi|315049235|ref|XP_003173992.1| stem-loop protein 1 suppressor [Arthroderma gypseum CBS 118893]
gi|311341959|gb|EFR01162.1| stem-loop protein 1 suppressor [Arthroderma gypseum CBS 118893]
Length = 487
Score = 253 bits (647), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 152/431 (35%), Positives = 232/431 (53%), Gaps = 80/431 (18%)
Query: 25 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKG 84
+GG E WE + R+WE L E G + +S + +R L+D T +Q+G
Sbjct: 59 HGGAE-WEVA----RTWETLVEGADGTITATVDSLLEADKRKRLLKD------TTPLQRG 107
Query: 85 LIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 144
+IR++ +V+DLS A AE D RP+R + + + FV+EFF+QNP+SQ+G++ +KDG+A
Sbjct: 108 IIRHMILVLDLSFAMAEKDLRPTRYLLTLRYAQKFVQEFFEQNPISQLGIMGMKDGIAVQ 167
Query: 145 LTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQ----IPSYGH---------- 190
++++ G+P H+ AL L S+ +PS +
Sbjct: 168 ISEMSGNPTEHMLAL-------------------HALRSEDPKGLPSLQNALEMARGSLY 208
Query: 191 -------REVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG- 242
REV+I+ AL + DPGDI +TI K+R +IGL+A++ +C+ +C T
Sbjct: 209 HTPSHGTREVIIILGALLSSDPGDIHQTITSLVADKVRVGIIGLAADVAVCREICAKTND 268
Query: 243 ---GSYSVALDESHFKELIMEHAPPPPAIAE-FAIANLIKMGFPQRAGEGSISICSCHKE 298
SY VA+DE H +L+++ PP ++ ++ ++L+ MGFP R E S+C+CH +
Sbjct: 269 GNDSSYGVAIDEKHLWDLLLDVTTPPITYSQRYSSSSLLMMGFPSRTVEPFPSLCACHSK 328
Query: 299 VKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDP 358
G GY C RC ++VC LP +C C L L+ S HLARSYHHLFP+ + EV P
Sbjct: 329 PVRG-GYMCSRCGSKVCSLPAECPTCNLTLILSTHLARSYHHLFPLINWVEV-------P 380
Query: 359 RNR-SRS-TCFGCQQSLLSSGNK----------PGLYVA----CPKCKKHFCLECDIYIH 402
R SRS +CF C + + G+ V+ C C HFC++CD++ H
Sbjct: 381 WKRASRSISCFACGNLFPAVPPRDKWDKRDKSIKGMSVSSRYECTVCHHHFCIDCDVFAH 440
Query: 403 ESLHNCPGCES 413
E +HNCPGC+S
Sbjct: 441 EVVHNCPGCQS 451
>gi|241950787|ref|XP_002418116.1| TFIIH subunit, putative; general transcription and DNA repair
factor IIH subunit, putative; suppressor of stem-loop
protein 1, putative [Candida dubliniensis CD36]
gi|223641455|emb|CAX43416.1| TFIIH subunit, putative [Candida dubliniensis CD36]
Length = 501
Score = 253 bits (647), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 160/457 (35%), Positives = 234/457 (51%), Gaps = 86/457 (18%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVAT-TARIQKGLIRY 88
AWE Y RSW+ +++DE G NS Q R + ++ + Q+G+IR
Sbjct: 57 AWEDEY--QRSWDIVKDDEQG-----GNSFEAMVQSIIENRKKKIMKNPSTPFQRGIIRT 109
Query: 89 LYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL 148
L I+ID S A +E D RPSR+++ ++ FV EFFDQNP+S++G++ +++GVAN ++++
Sbjct: 110 LIIIIDGSSAMSEKDLRPSRLSMTLNYLQEFVVEFFDQNPISRLGIILMRNGVANLVSEV 169
Query: 149 GGSPESHIKALM-------GKLGCSGDSSLQNALDLVQGLL------SQIPSYGHREVLI 195
GSP+ H+ + + GD SLQN+L++ + LL + S +E+L+
Sbjct: 170 SGSPQYHVDKIRNLKARQHNRFEPKGDPSLQNSLEMARSLLKFNFGSTSNNSKNSKEILV 229
Query: 196 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS--------YSV 247
++ AL T DPGDI +TI + +I+ SVIGLSA++ IC+ L T Y V
Sbjct: 230 IFGALFTSDPGDIHKTIDSLVKDEIKTSVIGLSAQVAICQELVNRTNKEPRNSQSKHYGV 289
Query: 248 ALDESHFKELIMEHAPPPPAI--------AEFAIANLIKMGFPQR--------------- 284
++ESHFKEL+ME P P +E +++MGFP +
Sbjct: 290 IMNESHFKELLMESVTPLPLTESEKQIQESEQNGVPVLRMGFPTKVQPTLTSAIGGSDYI 349
Query: 285 -------------AGEGSISICSCHKEVKVG----VGYTCPRCKARVCELPTDCRICGLQ 327
E S + +GY CP+CK +VC LPT C +CGL
Sbjct: 350 IEFPHLNASFPTQGSEDSKDVVEIQTNKPAAASSLIGYQCPQCKCKVCNLPTICPVCGLM 409
Query: 328 LVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY---- 383
L+ S HLARSYHHL P+AP+ EV + D + CFGCQ G K G
Sbjct: 410 LILSTHLARSYHHLVPLAPYKEVKVSPIYD-----STYCFGCQLK-FPEGVKLGTLKKSL 463
Query: 384 -------VACPKCKKHFCLECDIYIHESLHNCPGCES 413
C KC + FC+ CD+++HE LHNCPGCE+
Sbjct: 464 ESMTSSRYRCLKCSQDFCINCDVFVHEVLHNCPGCEN 500
>gi|238881955|gb|EEQ45593.1| suppressor of stem-loop protein 1 [Candida albicans WO-1]
Length = 472
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 161/462 (34%), Positives = 239/462 (51%), Gaps = 91/462 (19%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVAT-TARIQKGLIRY 88
AWE Y RSW+ +++DE G NS Q R + ++ + Q+G+IR
Sbjct: 23 AWEDEY--QRSWDIVKDDEQG-----GNSFEAMVQSIIENRKKKIMKNPSTPFQRGIIRT 75
Query: 89 LYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL 148
L I+ID S A +E D RP+R+++ ++ FV EFFDQNP+S++G++ +++GVAN ++++
Sbjct: 76 LIIIIDGSSAMSEKDLRPTRLSMTLNYLQEFVVEFFDQNPISRLGIILMRNGVANLVSEV 135
Query: 149 GGSPESHIKALM-------GKLGCSGDSSLQNALDLVQGLL------SQIPSYGHREVLI 195
GSP+ H+ + + GD SLQN+L++ + LL + S +E+L+
Sbjct: 136 SGSPQYHVDKIRNLKARQHNRFEPKGDPSLQNSLEMARSLLKFNFGSTSNNSKNSKEILV 195
Query: 196 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS--------YSV 247
++ AL T DPGDI +TI + +I+ SVIGLSA++ IC+ L T Y V
Sbjct: 196 IFGALFTSDPGDIHKTIDNLVKDEIKASVIGLSAQVAICQELVNRTNNEPRNSQSKHYGV 255
Query: 248 ALDESHFKELIMEHAPPPPAI--------AEFAIANLIKMGFPQRA-------------- 285
++ESHFKEL+ME P P +E +++MGFP +
Sbjct: 256 IMNESHFKELLMESVTPLPLTESEKQMQESEQNGVPVLRMGFPTKVQPTLTSAIGGSDYI 315
Query: 286 -----------GEGS------ISICSCHKEVKVG------VGYTCPRCKARVCELPTDCR 322
+GS + I + V +GY CP+CK +VC LPT C
Sbjct: 316 VEFPHLNASFPTQGSEDSKDVVEIQTNKPAAAVATTSSSVIGYQCPQCKCKVCNLPTICP 375
Query: 323 ICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGL 382
+CGL L+ S HLARSYHHL P+AP+ EV + D + CFGCQ G K G
Sbjct: 376 VCGLMLILSTHLARSYHHLVPLAPYKEVKVSPIYD-----STYCFGCQLK-FPEGVKLGT 429
Query: 383 YVA-----------CPKCKKHFCLECDIYIHESLHNCPGCES 413
+ C KC + FC+ CD+++HE LHNCPGCE+
Sbjct: 430 HKGTLESMTSSRYRCLKCSQDFCINCDVFVHEVLHNCPGCEN 471
>gi|68466623|ref|XP_722507.1| hypothetical protein CaO19.1457 [Candida albicans SC5314]
gi|68466906|ref|XP_722368.1| hypothetical protein CaO19.9032 [Candida albicans SC5314]
gi|46444338|gb|EAL03613.1| hypothetical protein CaO19.9032 [Candida albicans SC5314]
gi|46444486|gb|EAL03760.1| hypothetical protein CaO19.1457 [Candida albicans SC5314]
Length = 507
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 161/462 (34%), Positives = 239/462 (51%), Gaps = 91/462 (19%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVAT-TARIQKGLIRY 88
AWE Y RSW+ +++DE G NS Q R + ++ + Q+G+IR
Sbjct: 58 AWEDEY--QRSWDIVKDDEQG-----GNSFEAMVQSIIENRKKKIMKNPSTPFQRGIIRT 110
Query: 89 LYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL 148
L I+ID S A +E D RP+R+++ ++ FV EFFDQNP+S++G++ +++GVAN ++++
Sbjct: 111 LIIIIDGSSAMSEKDLRPTRLSMTLNYLQEFVVEFFDQNPISRLGIILMRNGVANLVSEV 170
Query: 149 GGSPESHIKALM-------GKLGCSGDSSLQNALDLVQGLL------SQIPSYGHREVLI 195
GSP+ H+ + + GD SLQN+L++ + LL + S +E+L+
Sbjct: 171 SGSPQYHVDKIRNLKARQHNRFEPKGDPSLQNSLEMARSLLKFNFGSTSNNSKNSKEILV 230
Query: 196 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS--------YSV 247
++ AL T DPGDI +TI + +I+ SVIGLSA++ IC+ L T Y V
Sbjct: 231 IFGALFTSDPGDIHKTIDSLVKDEIKASVIGLSAQVAICQELVNRTNNEPRNSQSKHYGV 290
Query: 248 ALDESHFKELIMEHAPPPPAI--------AEFAIANLIKMGFPQRA-------------- 285
++ESHFKEL+ME P P +E +++MGFP +
Sbjct: 291 IMNESHFKELLMESVTPLPLTESEKQIQESEQNGVPVLRMGFPTKVQPTLTSAIGGSDYI 350
Query: 286 -----------GEGS------ISICSCHKEVKVG------VGYTCPRCKARVCELPTDCR 322
+GS + I + V +GY CP+CK +VC LPT C
Sbjct: 351 VEFPHLNASFPTQGSEDSKDVVEIQTNKPAAAVATTSSSVIGYQCPQCKCKVCNLPTICP 410
Query: 323 ICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGL 382
+CGL L+ S HLARSYHHL P+AP+ EV + D + CFGCQ G K G
Sbjct: 411 VCGLMLILSTHLARSYHHLVPLAPYKEVKVSPIYD-----STYCFGCQLK-FPEGVKLGT 464
Query: 383 YVA-----------CPKCKKHFCLECDIYIHESLHNCPGCES 413
+ C KC + FC+ CD+++HE LHNCPGCE+
Sbjct: 465 HKGTLESMTSSRYRCLKCSQDFCINCDVFVHEVLHNCPGCEN 506
>gi|260943474|ref|XP_002616035.1| hypothetical protein CLUG_03276 [Clavispora lusitaniae ATCC 42720]
gi|238849684|gb|EEQ39148.1| hypothetical protein CLUG_03276 [Clavispora lusitaniae ATCC 42720]
Length = 459
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 152/427 (35%), Positives = 225/427 (52%), Gaps = 55/427 (12%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYL 89
AWE Y R+W+ +++D S RP++ R+ R+ Q+G+IR +
Sbjct: 42 AWEDEY--QRTWDIVKDDTS---RPVELLVQQMVDARKAKLSRN---AATPFQRGIIRTV 93
Query: 90 YIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
+V+D SRA E D RP+R ++ FV EFFDQNP++Q+ +V +++GVA+ +++L
Sbjct: 94 VVVVDASRAMLEKDLRPTRFGATVAHLQDFVAEFFDQNPIAQMAVVMMRNGVASVVSELS 153
Query: 150 GSPESHIKALMG------KLGCSGDSSLQNALDLVQGLLSQ---IPSYGHREVLILYSAL 200
GS + HI+ L L GD SLQNAL+L + LL+ S RE+++++ AL
Sbjct: 154 GSAQLHIERLRALRARQHTLEPKGDPSLQNALELARALLTAGGGPTSRSSREIVVVFGAL 213
Query: 201 STCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKE 256
T DPGDI +TI +IR VIGL+A++ IC+ L T Y V + ++HF+E
Sbjct: 214 FTSDPGDIHQTIDSLVRDEIRVRVIGLAAQVAICRELVARTNAGECAGYGVIVGDAHFRE 273
Query: 257 LIMEHAPPPPAIAEFAIAN-----LIKMGFPQR--AGEGSISICSCHKE-VKVGVGYTCP 308
L+M P A+A A +++MGFP R A G +C+CH + GY CP
Sbjct: 274 LLMACV-EPLAVARRAAETATGVPVLRMGFPSRAPAAPGMPVLCACHPQGGGADTGYWCP 332
Query: 309 RCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRST--- 365
+C++RVC LP C +CGL L+ S HLAR++HHL P ++ N S +
Sbjct: 333 QCRSRVCSLPCVCPVCGLMLILSTHLARTHHHLVPPPDYETKEETKETKETNDSNNDNSN 392
Query: 366 -------------------CFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLH 406
CFGC L G AC C + FC++CD+++HE LH
Sbjct: 393 SNNDSSNSNNDSSGNSSERCFGC---LAQGDGALGARYACAACGQRFCIDCDVFVHEVLH 449
Query: 407 NCPGCES 413
NCPGCE+
Sbjct: 450 NCPGCEA 456
>gi|324520669|gb|ADY47691.1| General transcription factor IIH subunit 2, partial [Ascaris suum]
Length = 345
Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 136/344 (39%), Positives = 196/344 (56%), Gaps = 14/344 (4%)
Query: 19 DEDDNLNGGLEAWERSYADDRSW-EALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVAT 77
+EDD G WE +YA+ + E L+EDESG + + A+ +RRL DR
Sbjct: 6 NEDDEQKG--YTWEIAYAEGLNIREVLEEDESGSVEKSVAKLIFEAKRKRRLTDRP---- 59
Query: 78 TARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTV 137
ARI+ G++RY+YI+ID S A E P+R+ V K + F+ +F +QNP+SQ+G++
Sbjct: 60 -ARIRLGIMRYVYIIIDCSLAMTEKTLLPTRLNVTLKVLNQFLEKFSEQNPISQVGIIIC 118
Query: 138 KDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLI 195
+D A L L G+ + +AL + + C G+ SLQN L + L P + RE++
Sbjct: 119 RDKRAERLIQLTGTIRAVKEALSTINEASCHGEFSLQNGLLVALRSLQHFPGHASREIIA 178
Query: 196 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFK 255
+ ++LSTCDP +I T + K + +RCSVIGLSAE+F+ K LC T G Y V LD HF
Sbjct: 179 IVASLSTCDPSNIFGTFEVLKRNNVRCSVIGLSAEVFVYKKLCSTTSGRYDVILDGDHF- 237
Query: 256 ELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKV---GVGYTCPRCKA 312
ELI+ PP + +++MGFP + C CH+ G G+ CP+C A
Sbjct: 238 ELILNEYTNPPVTKRNVESCVVRMGFPSHQIIQKPAFCLCHQSENRPPGGRGFLCPQCGA 297
Query: 313 RVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLN 356
R C LP +CR+C L L+S+P LARS+HHL P+ F EV C+
Sbjct: 298 RYCSLPVECRVCKLMLISAPQLARSFHHLLPLPAFKEVIDYCVK 341
>gi|295657028|ref|XP_002789089.1| suppressor of stem-loop protein [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226284987|gb|EEH40553.1| suppressor of stem-loop protein [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 513
Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 143/367 (38%), Positives = 198/367 (53%), Gaps = 35/367 (9%)
Query: 26 GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGL 85
GG E WE S R+WE L E G +R + +R LRD T +Q+G+
Sbjct: 55 GGAE-WEVS----RTWETLVEGADGTIRATVEGLLEAGKRKRVLRD------TTPLQRGI 103
Query: 86 IRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 145
IR+L +++DLS A +E D RP+R + + + FVREFFDQNP+SQ+G++ ++DG+A +
Sbjct: 104 IRHLILILDLSSAMSEKDLRPTRYLLTLRYAQDFVREFFDQNPISQLGVLGMRDGLAVRI 163
Query: 146 TDLGGSPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTC 203
+D+ G+P HI A+ G G SLQNAL++ +G L PS+G REVLI+Y AL +
Sbjct: 164 SDMSGNPTEHILAIQGLRAKDPKGMPSLQNALEMARGALFHTPSHGTREVLIIYGALLSS 223
Query: 204 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGG----SYSVALDESHFKELIM 259
DPGDI +TI KI V+GL+A++ IC+ L T Y+VA++E HF+EL++
Sbjct: 224 DPGDIHKTITSLITDKIHVYVLGLAAQVSICQELVTRTNNGDDSGYNVAMNEQHFRELVL 283
Query: 260 EHAPPPPAIAEFAI-----------------ANLIKMGFPQRAGEGSISICSCHKEVKVG 302
PP L+ MGFP R ++C+CH
Sbjct: 284 NVTTPPATTLASHTTTTTGAANGTSTNTSTDGTLLPMGFPNRHLTPHPTLCACHSTPSRS 343
Query: 303 VGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRS 362
GY CPRC +VC LP C C L L+ S HLARSYHHLFP+ + EV+
Sbjct: 344 -GYLCPRCCTKVCTLPASCPSCKLTLILSTHLARSYHHLFPLMNWVEVSWRKAARAEAEG 402
Query: 363 RSTCFGC 369
R CF C
Sbjct: 403 RVGCFAC 409
>gi|430811329|emb|CCJ31252.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 319
Score = 250 bits (639), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 133/323 (41%), Positives = 194/323 (60%), Gaps = 26/323 (8%)
Query: 103 DFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--M 160
D PSR V Q +FV E+F+QNPL+Q+G++ ++DG A ++ GG+P H+ L +
Sbjct: 5 DLIPSRYVVSIDQASSFVSEYFEQNPLAQLGIIGMRDGRAISISPYGGNPHEHLMTLSRL 64
Query: 161 GKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKI 220
++ SGD+SLQNAL++ + +L +P +G REVL+++ +L++ DPGDI ETI E KI
Sbjct: 65 KQMDPSGDASLQNALEMARTILYPVPKHGTREVLLIFGSLTSFDPGDIYETINVLIEEKI 124
Query: 221 RCSVIGLSAEMFICKHLCQDTGG----SYSVALDESHFKELIMEHAPPPPAIAEFA-IAN 275
R VIGLSA M +C+ +C++T SY + L+E HF +L+M+ PP +
Sbjct: 125 RVYVIGLSASMSVCQQICKETNAGDESSYGIVLNEQHFHDLLMQFVIPPALKKSHKFLET 184
Query: 276 LIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLA 335
LI MGFP + E ++C+CH +V + GY CPRC ++VC LP +C C L L+ S HLA
Sbjct: 185 LIMMGFPSKLIENDETLCACHSDV-IKEGYLCPRCFSKVCSLPINCPCCDLTLILSTHLA 243
Query: 336 RSYHHLFPIAPFDEVTPLCLNDPRNRSRST-CFGC---------QQSLLSSGNKPGLYVA 385
RSYHHLFP+ + EV P + ST C+ C S+ S + Y A
Sbjct: 244 RSYHHLFPLKNWIEV-------PWEEAYSTHCYACLIPFPEKHEVTSITHSVSISSRY-A 295
Query: 386 CPKCKKHFCLECDIYIHESLHNC 408
C +C KHFC++CD++ HE L C
Sbjct: 296 CSECHKHFCIDCDVFAHEILFEC 318
>gi|405122345|gb|AFR97112.1| RNA polymerase II transcription factor [Cryptococcus neoformans
var. grubii H99]
Length = 425
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 147/403 (36%), Positives = 221/403 (54%), Gaps = 53/403 (13%)
Query: 3 NSERKRLNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYH 62
+S R+ + +++D + G +AWE Y +SW+ +QEDESG L SA
Sbjct: 28 SSRRQGRGAAGRGKGKNKDLSDQSGRQAWEGEY--QKSWDIVQEDESGSL----ESAVET 81
Query: 63 AQYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVRE 122
R R R R+L++ T +++ +IR+++I+IDLS + + D+RP+R V+ + +V E
Sbjct: 82 LLARGR-RKRALMSDTP-VRRSIIRHVFIIIDLSESMLDKDYRPTRFEVILGYLRTYVVE 139
Query: 123 FFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGK--LGCSGDSSLQNALDLVQG 180
+FDQNPL QIG++ ++ SPE ++AL K L SG+ SLQN L + +G
Sbjct: 140 WFDQNPLGQIGVIAMR------------SPEEIVRALSDKRKLEPSGEPSLQNGLVMAKG 187
Query: 181 LLSQIPSYGHREVLILYSALSTCDPG---DIMETIQKCKESKIRCSVIGLSAEMFICKHL 237
++ +PS E+L+++SA+ST DP I + IR S++ LS E+ ICK +
Sbjct: 188 GMAHLPSTSSLEILVIFSAISTADPDGPVTIHNVLDTLATGHIRTSILSLSGEIKICKQI 247
Query: 238 CQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIAN---------------------- 275
+ TGG + VALD+ H K+L+ E PPP AN
Sbjct: 248 AERTGGKFGVALDQEHLKDLLWETIPPPATTIAPVTANVRSALAAGGRGPNQTGERAPAG 307
Query: 276 -LIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHL 334
L+ MGFP R G ++C+CH ++ G GY CPRC +++C++PTDC +CGL +VSSPHL
Sbjct: 308 DLMVMGFPIRLPLGGETMCACHGLLRKG-GYLCPRCGSKLCDVPTDCEVCGLMVVSSPHL 366
Query: 335 ARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
ARS+ LFP+A + PL + D S TCFGC G
Sbjct: 367 ARSFWFLFPVANYG---PLAIED-VVESSETCFGCDSEFSDVG 405
>gi|324520938|gb|ADY47747.1| General transcription factor IIH subunit 2, partial [Ascaris suum]
Length = 340
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 135/338 (39%), Positives = 194/338 (57%), Gaps = 14/338 (4%)
Query: 19 DEDDNLNGGLEAWERSYADDRSW-EALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVAT 77
+EDD G WE +YA+ + E L+EDESG + + A+ +RRL DR
Sbjct: 6 NEDDEQKG--YTWEIAYAEGLNIREVLEEDESGSVEKSVAKLIFEAKRKRRLTDRP---- 59
Query: 78 TARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTV 137
ARI+ G++RY+YI+ID S A E P+R+ V K + F+ +F +QNP+SQ+G++
Sbjct: 60 -ARIRLGIMRYVYIIIDCSLAMTEKTLLPTRLNVTLKVLNQFLEKFSEQNPISQVGIIIC 118
Query: 138 KDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLI 195
+D A L L G+ + +AL + + C G+ SLQN L + L P + RE++
Sbjct: 119 RDKRAERLIQLTGTIRAVKEALSTINEASCHGEFSLQNGLLVALRSLQHFPGHASREIIA 178
Query: 196 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFK 255
+ ++LSTCDP +I T + K + +RCSVIGLSAE+F+ K LC T G Y V LD HF
Sbjct: 179 IVASLSTCDPSNIFGTFEVLKRNNVRCSVIGLSAEVFVYKKLCSTTSGRYDVILDGDHF- 237
Query: 256 ELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKV---GVGYTCPRCKA 312
ELI+ PP + +++MGFP + C CH+ G G+ CP+C A
Sbjct: 238 ELILNEYTNPPVTKRNVESCVVRMGFPSHQIIQKPAFCLCHQSENRPPGGRGFLCPQCGA 297
Query: 313 RVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEV 350
R C LP +CR+C L L+S+P LARS+HHL P+ F EV
Sbjct: 298 RYCSLPVECRVCKLMLISAPQLARSFHHLLPLPAFKEV 335
>gi|336468464|gb|EGO56627.1| hypothetical protein NEUTE1DRAFT_84011 [Neurospora tetrasperma FGSC
2508]
gi|350289275|gb|EGZ70500.1| TFIIH basal transcription factor complex, subunit SSL1 [Neurospora
tetrasperma FGSC 2509]
Length = 416
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 141/342 (41%), Positives = 191/342 (55%), Gaps = 33/342 (9%)
Query: 15 EEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSL 74
E D++ NG A RS SWE ++ L D S A+ R + R L
Sbjct: 7 EYASDDELKRNGKRTADGRSKQSKASWEDVKRSWDTVLETAD-SGLSIAEIREAEKRRRL 65
Query: 75 VATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGL 134
+ T +Q+G+IR+L +V+D+S A A+ D P+R VV FVRE+F+QNP+SQ+G+
Sbjct: 66 LRDTTPLQRGIIRHLMLVLDMSFAMADKDLLPNRYRVVLNNAIGFVREYFEQNPISQLGI 125
Query: 135 VTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVL 194
V ++DG+A ++DL G+P HI+ +Q PS+ REVL
Sbjct: 126 VGMRDGIAVRISDLSGNPAEHIE-------------------------NQTPSHATREVL 160
Query: 195 ILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG---GSYSVALDE 251
I+Y AL + DPGDI +TI +IR SV+GL+ ++ IC LC+ T G+YSVA+DE
Sbjct: 161 IIYGALVSIDPGDIHDTINDLVADRIRVSVVGLAGQVAICSELCKRTNNHDGNYSVAVDE 220
Query: 252 SHFKELIMEHAPPPPA-IAEFAIANLIKMGFPQR--AGEGSISICSCHKEVKVGVGYTCP 308
H KEL PP E A+L+ MGFP R A + +S C+CH + GYTCP
Sbjct: 221 VHLKELFFAATTPPVTRTPEQNTASLLMMGFPSRTLAPKDHVSFCACHAK-PTREGYTCP 279
Query: 309 RCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEV 350
RC +VC LP DC IC L L+ S HLARSYHHLFP+ F EV
Sbjct: 280 RCGIKVCRLPIDCPICKLTLIQSTHLARSYHHLFPLKVFVEV 321
>gi|116199505|ref|XP_001225564.1| hypothetical protein CHGG_07908 [Chaetomium globosum CBS 148.51]
gi|88179187|gb|EAQ86655.1| hypothetical protein CHGG_07908 [Chaetomium globosum CBS 148.51]
Length = 463
Score = 248 bits (632), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 151/432 (34%), Positives = 210/432 (48%), Gaps = 111/432 (25%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRL-RDRSLVATTARIQKGLIRY 88
AWE RSWE + E E G I A A+ RRRL RD T Q+G+IR+
Sbjct: 56 AWEDI---KRSWEHVVETEDG---SITVGALLEAEKRRRLMRD------TTPFQRGIIRH 103
Query: 89 LYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL 148
+ +V+D+S A AE D P+R + FVRE+F+QNP+SQ+G+V ++DG+A ++D+
Sbjct: 104 VMLVLDMSFAMAEKDLLPNRYLLTLNYAVDFVREYFEQNPISQLGIVGMRDGIAVRISDM 163
Query: 149 GGSPESHIKAL---MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDP 205
GG+P HI+ L + G+ SLQNAL++ +G L PS+G RE+LI+Y AL + DP
Sbjct: 164 GGNPAEHIEKLRVWAEQQEPQGNPSLQNALEMCRGALFHTPSHGTREILIIYGALLSSDP 223
Query: 206 GDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGG----SYSVALDESHFKELIMEH 261
GDI +TI +IR S++GL+A++ IC+ LC T G +Y+VAL E HF+EL +
Sbjct: 224 GDIHDTITNLLADRIRVSIVGLAAQVAICEQLCSRTNGGDPSNYAVALHEQHFRELFLAA 283
Query: 262 APPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDC 321
PP VC LP +C
Sbjct: 284 TTPP------------------------------------------------VCRLPAEC 295
Query: 322 RICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL-------- 373
+C L LV S HLARSYHHLFP+ + V+ D R R S CF C +
Sbjct: 296 PVCALTLVLSTHLARSYHHLFPLRGWAAVS---WADARARGSSACFACLAAFPAVPPSGQ 352
Query: 374 --------------------------------LSSGNKPGLYVACPKCKKHFCLECDIYI 401
++G AC C HFC++CD++
Sbjct: 353 IQTQTQVQANGNGNGNGRDTDRDKGRDAAEVKAAAGVSESGRYACTVCNNHFCIDCDVFA 412
Query: 402 HESLHNCPGCES 413
HE +HNCPGC+S
Sbjct: 413 HEVIHNCPGCQS 424
>gi|451846168|gb|EMD59479.1| hypothetical protein COCSADRAFT_41319 [Cochliobolus sativus ND90Pr]
Length = 496
Score = 247 bits (631), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 133/389 (34%), Positives = 204/389 (52%), Gaps = 60/389 (15%)
Query: 78 TARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTV 137
T Q+G+IR++ +V+DLS A E D RP+R + + ++REFF+QNP+SQ+ ++ +
Sbjct: 93 TKPFQRGIIRHVVLVLDLSEAMLEKDMRPNRFITMINYTQDYIREFFEQNPISQMSVLGM 152
Query: 138 KDGVANCLTDLGGSPESHIKALMGKLGC------SGDSSLQNALDLVQGLLSQIPSYGHR 191
DGV +++L G+P H+ A+ G G SLQNAL+L + L P++G R
Sbjct: 153 HDGVCIRVSELSGNPAEHVAAIQGLRSKDDGKEPKGSPSLQNALELARATLYHTPNHGTR 212
Query: 192 EVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS----YSV 247
EV++++ +L + DPGDI ++++ C +IR S+IG+ A + IC + + T Y++
Sbjct: 213 EVIVVFGSLLSLDPGDIHQSVKACVRDRIRVSIIGMGARLKICTEIVKRTNAGDESEYTI 272
Query: 248 ALDESHFKELIMEHAPPP----PAIAEF-----------AIANLIKMGFPQRAGEGSISI 292
A D+ +EL+ PP P + + + A L+ MGFP R E +++
Sbjct: 273 ATDQEMLRELLQATTTPPVIRQPLLTDKTAPVTTTQSSESAAALMMMGFPSRVVEDQLTM 332
Query: 293 CSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTP 352
C+CH + +G GYTC RC A+VC LP C C L L+ S HLARSYHHLFP+ + V+
Sbjct: 333 CACHGNLTMG-GYTCSRCSAKVCSLPITCPSCQLTLLLSTHLARSYHHLFPLRNWATVS- 390
Query: 353 LCLNDPRNRSRSTCFGC------------------------------QQSLLSSGNKPGL 382
+ R C GC S ++ G
Sbjct: 391 --WSRAREMGSKQCVGCLAAFSNPPSNAKENGEAKRDSEAKVAKKDDDDSEEQKASESGR 448
Query: 383 YVACPKCKKHFCLECDIYIHESLHNCPGC 411
Y C C+ HFC++CD++ H LHNCPGC
Sbjct: 449 Y-ECRACESHFCIDCDMFAHMVLHNCPGC 476
>gi|164662116|ref|XP_001732180.1| hypothetical protein MGL_0773 [Malassezia globosa CBS 7966]
gi|159106082|gb|EDP44966.1| hypothetical protein MGL_0773 [Malassezia globosa CBS 7966]
Length = 349
Score = 247 bits (631), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 131/351 (37%), Positives = 194/351 (55%), Gaps = 43/351 (12%)
Query: 100 AEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL 159
++ D RP+R + + FV ++FDQNP+ Q+ ++ +DG+A L+ +GG+ H L
Sbjct: 2 SDRDLRPTRFDLTLQLARQFVADYFDQNPIGQLAILCARDGLAERLSLMGGNTFDHGAVL 61
Query: 160 MG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKE 217
KL G+ S+QNAL++ L+ +PS RE+L + ++L++ DPG+I TI K +
Sbjct: 62 SSRRKLEPRGEPSIQNALEMALSSLTHLPSSNTREILFISASLTSVDPGNIYHTIDKLVD 121
Query: 218 SKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA--- 274
I+ SVI L+AEM + K C TGG ++V ++E H+KEL+M+H PP I E + +
Sbjct: 122 EHIQLSVISLAAEMHVLKDACARTGGDFNVVMNEDHYKELLMQHV-PPRVITEASSSSHL 180
Query: 275 ------NLIKMGFPQRAG-EGSISICSCHKEVKVG-------------VGYTCPRCKARV 314
+L+ MGFP+R S C+CH + G GYTCPRC ++V
Sbjct: 181 AHSNECDLLVMGFPRRIPFHTPASFCACHGRLVTGSRSLSYADRGAAPAGYTCPRCASKV 240
Query: 315 CELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC----- 369
C++PTDC CG+ ++ S HLARSYHHLFP+ ++ P+ S S CF C
Sbjct: 241 CQVPTDCPTCGITIIMSTHLARSYHHLFPVQNYE---PVAWEAVSTTSPSNCFACAFPFP 297
Query: 370 ---------QQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
++ S P CPKC +HFCLECD ++ E LH CPGC
Sbjct: 298 PRPSNLDETSHVVMDSTLAPSSRYMCPKCHQHFCLECDAFVQEQLHTCPGC 348
>gi|396458460|ref|XP_003833843.1| hypothetical protein LEMA_P066040.1 [Leptosphaeria maculans JN3]
gi|312210391|emb|CBX90478.1| hypothetical protein LEMA_P066040.1 [Leptosphaeria maculans JN3]
Length = 618
Score = 247 bits (631), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 156/475 (32%), Positives = 237/475 (49%), Gaps = 78/475 (16%)
Query: 2 TNSERKRLNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFY 61
T S + + ++ ++DE + +AWE Y+ R+ E ++P++N
Sbjct: 125 TGSGTRAQSTSSKRRKKDEPEKAAPRRQAWETEYS--RTVEKT-------VQPVNNGIVG 175
Query: 62 HA--QYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAF 119
+ + + + L T Q+G+IR++ +V+DLS A E D RP+R + + +
Sbjct: 176 QSVQEREEERKRKRLRKDTKPFQRGIIRHVVLVLDLSEAMMEKDMRPNRFFAMINYTQDY 235
Query: 120 VREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALM-------GKLGCSGDSSLQ 172
VREFF+QNP+SQ+ ++ + DGV +++L G+P H+ A+ GK G SLQ
Sbjct: 236 VREFFEQNPISQMSVLGMHDGVCIRVSELSGNPAEHVAAIASLRSKEDGKEP-KGAPSLQ 294
Query: 173 NALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMF 232
NAL+L + L P +G REV+I++ +L + DPGDI T++ C +IR S+IG+ A +
Sbjct: 295 NALELARATLYHTPPHGTREVIIVFGSLLSLDPGDIHTTVKACVRDRIRVSIIGMGARLK 354
Query: 233 ICKHLCQDTGGS----YSVALDESHFKELIMEHAPPPPAIAEF----------AIANLIK 278
IC + T Y+VA+D+ KEL++ PP + E + A L++
Sbjct: 355 ICTEIVTRTNAGDTSEYTVAIDQEALKELLLATT-TPPVVRETKQSGTEPPPESAAALMR 413
Query: 279 MGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSY 338
MGFP R E +++C+CH + +G GYTC RC A+VC LP C C L L+ S HLARSY
Sbjct: 414 MGFPSRVIEDQLTMCACHGNLTLG-GYTCSRCSAKVCSLPITCPSCQLTLLLSTHLARSY 472
Query: 339 HHLFP-----------------------IAPFDEVTPLCLN--------------DPRNR 361
HHLFP +A F + P N PR
Sbjct: 473 HHLFPLRNWATVSWARAREVGSTQCTGCLAAFSKPPPKDNNRHVVEDEDEDDDATQPRKH 532
Query: 362 SRSTCFGCQQSLLSSGNK---PGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 413
+ ST Q L ++ P C C HFC++CD++ H LHNCPGC S
Sbjct: 533 AAST---TQDDALDGEDQRASPSGRYECQACNSHFCIDCDVFAHMVLHNCPGCLS 584
>gi|340378764|ref|XP_003387897.1| PREDICTED: general transcription factor IIH subunit 2-like
[Amphimedon queenslandica]
Length = 354
Score = 247 bits (630), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 145/408 (35%), Positives = 215/408 (52%), Gaps = 57/408 (13%)
Query: 9 LNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRR 68
+ G+ + EED GG WE Y +R WEA+QED G + D+ Y +
Sbjct: 1 MEGDTVDVEED------GGGYTWEGEY--ERPWEAIQEDIEGHILAPDDDFMY------K 46
Query: 69 LRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNP 128
+ R L + ++ G++R++ IV+D +++ + D +P+R ++ F+ EFFD NP
Sbjct: 47 TKRRKLFNHESGVKLGIMRHILIVVDSTQSMNDKDLKPNRFTCTKTVLKKFLDEFFDFNP 106
Query: 129 LSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSY 188
+SQ + ++ H +AL + CSG+ SLQNA++L +L IP++
Sbjct: 107 ISQRDRRRYHTNTIINICNVS----VHKRALDTDVECSGECSLQNAMELSLRMLRHIPTH 162
Query: 189 GHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVA 248
REV+I++ +L++CDPG+I TI + IRCSVIGL+A + +C +C+ T G Y V
Sbjct: 163 ASREVIIIHGSLTSCDPGNIFSTINDFNQQNIRCSVIGLAASVKLCHTICERTSGVYQVI 222
Query: 249 LDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCP 308
LDE HF++ +++H PP A A LIKM GEG + G
Sbjct: 223 LDEVHFRDCLLQHCRPPGVKASTETA-LIKM------GEGVSLNIKLWPHYQFVCGKEQA 275
Query: 309 RCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFG 368
C+++ CELP +C CG+ LV +P LARSYHHLFP+ F E T
Sbjct: 276 WCQSKYCELPVECVTCGITLVLAPQLARSYHHLFPLKMFIEST----------------- 318
Query: 369 CQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCE-SLR 415
+YV CP C+ FC++CD+Y HE+LHNCPGCE SLR
Sbjct: 319 -------------VYV-CPSCRHSFCIDCDLYCHETLHNCPGCENSLR 352
>gi|302418082|ref|XP_003006872.1| suppressor of stem-loop protein [Verticillium albo-atrum VaMs.102]
gi|261354474|gb|EEY16902.1| suppressor of stem-loop protein [Verticillium albo-atrum VaMs.102]
Length = 468
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 148/412 (35%), Positives = 221/412 (53%), Gaps = 46/412 (11%)
Query: 39 RSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRA 98
RSWE ++E G L D A+ RRRL + T +Q+G+IR+L +V+D+S A
Sbjct: 45 RSWETVEEGADGSL---DVEGRAEAEKRRRL-----LRDTTPLQRGIIRHLVLVLDMSFA 96
Query: 99 AAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKA 158
AE D P+R+ + + FV+E+F+QNP+SQ+G+V ++DGVA ++++GG+P H++A
Sbjct: 97 MAEKDLLPTRLRLTWRLAREFVKEYFEQNPISQMGIVGMRDGVAVRVSEMGGNPVEHVEA 156
Query: 159 L--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCK 216
+ ++ G SLQNAL++ +G L PS+G REVL++Y AL + DPGDI +TI
Sbjct: 157 INKWAEIDPQGSPSLQNALEMCRGALFHAPSHGTREVLVVYGALLSSDPGDIHDTIANLL 216
Query: 217 ESKIRCSVIGLSAEMFICKHLCQDTGGS----YSVALDESHFKELIMEHAPPPPAIAEF- 271
+IR S++GL+A++ IC+ LC+ T Y++ALDE H++EL++ PP +
Sbjct: 217 TDRIRVSIVGLAAQVAICEELCRKTNAGDATQYNIALDEMHYRELLLRTTTPPVTRTQAQ 276
Query: 272 AIANLIKMGFPQR--AGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLV 329
+ A+L+ MGFP R A + + C+CH V GY C RC RVC LP +C CGL
Sbjct: 277 STASLLMMGFPSRTLAPADTTAYCACHN-TPVREGYLCTRCGTRVCRLPAECPACGLTPH 335
Query: 330 S----------------------SPHLARSYHHLFPIAPFDEVTP------LCLNDPRNR 361
P A S +APF + D R R
Sbjct: 336 PLHPPRPLLPPPLSRCATGSRSPGPRAAASRACYSCLAPFPDPPAQRRGHRANGTDGRRR 395
Query: 362 SRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 413
+ + G AC C HFC++CD++ HE +HNCPGC+S
Sbjct: 396 GDAGDEEPAPAPKQKGVSESSRYACQVCGNHFCIDCDVFAHEVIHNCPGCQS 447
>gi|85080851|ref|XP_956615.1| suppressor of stem-loop protein 1 [Neurospora crassa OR74A]
gi|28881240|emb|CAD70478.1| related to transcription factor TFIIH chain p47 [Neurospora crassa]
gi|28917686|gb|EAA27379.1| suppressor of stem-loop protein 1 [Neurospora crassa OR74A]
Length = 416
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 139/342 (40%), Positives = 191/342 (55%), Gaps = 33/342 (9%)
Query: 15 EEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSL 74
E D++ +G A RS SWE ++ L D S A+ R + R L
Sbjct: 7 EYASDDELKRHGKRTADGRSKQTKASWEDVKRSWDTVLETAD-SGLSIAEIREAEKRRRL 65
Query: 75 VATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGL 134
+ T +Q+G+IR+L +V+D+S A A+ D P+R VV FVRE+F+QNP+SQ+G+
Sbjct: 66 LRDTTPLQRGIIRHLMLVLDMSFAMADKDLLPNRYRVVLNNAIGFVREYFEQNPISQLGI 125
Query: 135 VTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVL 194
V ++DG+A ++DL G+P HI+ +Q PS+ RE+L
Sbjct: 126 VGMRDGIAVRISDLSGNPAEHIE-------------------------NQTPSHATREIL 160
Query: 195 ILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG---GSYSVALDE 251
I+Y AL + DPGDI +TI +IR SV+GL+ ++ IC LC+ T G+YSVA+DE
Sbjct: 161 IIYGALVSIDPGDIHDTINDLVADRIRVSVVGLAGQVAICSELCKRTNNHDGNYSVAVDE 220
Query: 252 SHFKELIMEHAPPPPA-IAEFAIANLIKMGFPQR--AGEGSISICSCHKEVKVGVGYTCP 308
H KEL PP E A+L+ MGFP R A + +S C+CH + GYTCP
Sbjct: 221 VHLKELFFAATTPPVTRTPEQNTASLLMMGFPSRTLAPKDHVSFCACHAK-PTREGYTCP 279
Query: 309 RCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEV 350
RC +VC LP DC IC L L+ S HLARSYHHLFP+ F EV
Sbjct: 280 RCGIKVCRLPIDCPICKLTLIQSTHLARSYHHLFPLKVFVEV 321
>gi|401395984|ref|XP_003879726.1| putative general transcription factor IIH polypeptide 2 [Neospora
caninum Liverpool]
gi|325114133|emb|CBZ49691.1| putative general transcription factor IIH polypeptide 2 [Neospora
caninum Liverpool]
Length = 487
Score = 240 bits (613), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 155/435 (35%), Positives = 218/435 (50%), Gaps = 58/435 (13%)
Query: 10 NGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGF--LRPIDNSAFYHAQYRR 67
NG+A EE+ G AWE +RSW+ L E GF L A + RR
Sbjct: 29 NGDAAAEEDLY------GQYAWE--CEAERSWDQLVESSEGFVLLHGASGGADEGVKTRR 80
Query: 68 RLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQN 127
R + L +I+KG+IR L ++ID+S A E DFRP R++ V + E F+ F QN
Sbjct: 81 ADRRQQL---EPQIKKGVIRSLVLLIDMSEAMREKDFRPDRLSCVCQLAEEFIGTFLLQN 137
Query: 128 PLSQIGLVTVKDGVAN------CLTDLGGSPESHIKALMGKLGC---------------- 165
PL+Q+ V + A+ C G SP G +G
Sbjct: 138 PLAQLAQVALIGPSADPIVTSRCGATRGDSPSVPAARSPGSVGTHLFSSNAEECIASLRE 197
Query: 166 ---------SGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCK 216
+G SL+N L L + LL+ +P Y REVLILY +L TCD G I ETI K
Sbjct: 198 KRKTTPGVGTGVPSLKNGLRLAKDLLACVPPYCTREVLILYGSLRTCDVGCIEETIADVK 257
Query: 217 ESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANL 276
E I C+VI L+AEM + K LCQ+TGG ++V L H + L+++H PPA + +L
Sbjct: 258 EGNICCNVICLAAEMHVLKKLCQETGGRHAVPLHREHLRSLLVQHT-LPPAWSSSMQPSL 316
Query: 277 IKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLAR 336
++MGFP + ++CSCH+++ Y CP+C A++C++P CR C L LVS ++R
Sbjct: 317 VRMGFPSLKSTSTAALCSCHQQLTFS-AYVCPQCGAKLCDIPNRCRCCFLHLVSPADISR 375
Query: 337 SYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLE 396
S+H L P PFD V + ++ C C L G++ CP C + FC +
Sbjct: 376 SFHSLCPPLPFDPVADI------PEAKRVCACCTTRLERGGSQ------CPDCGEIFCHD 423
Query: 397 CDIYIHESLHNCPGC 411
CD+Y HE L C C
Sbjct: 424 CDVYTHEQLRQCAFC 438
>gi|399216155|emb|CCF72843.1| unnamed protein product [Babesia microti strain RI]
Length = 408
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 145/412 (35%), Positives = 218/412 (52%), Gaps = 31/412 (7%)
Query: 18 EDEDDNLNGGLE------AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD 71
E+ +D LN E AWE+ +R+WE L E++ G L+ F + R+ D
Sbjct: 8 EEYEDTLNDFQEDALAQYAWEQDL--ERTWEKLIEND-GELK------FSQSTKARKNID 58
Query: 72 RSLVATTAR-----IQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQ 126
R + + + +++G+IR + I+ DLS ++DF+P+R+ Q F+RE F Q
Sbjct: 59 RPIDSGVSDGNNIIVKRGIIRNILILFDLSDRMRDIDFKPNRLHTAVAQTSKFIRELFYQ 118
Query: 127 NPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKL--GCSGDSSLQNALDLVQGLLSQ 184
P+SQ+G+V +K+ +A ++ G + + I L L G GD SLQNAL++ LL
Sbjct: 119 CPISQVGIVAMKNKLAKLISPFGSNTDEQISRLNDLLSDGPEGDISLQNALEMSISLLDD 178
Query: 185 IPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS 244
+P Y RE+LI++ ++ TCDPG+I TI++ K+ I I LS+E++I KH+C +T GS
Sbjct: 179 VPQYTTREILIVFGSIKTCDPGNIFATIKRLKKHHITVDAISLSSELYILKHICTETNGS 238
Query: 245 YSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVG 304
+SVA+D L + PP + + L+K+GFP + S+C CH ++ V
Sbjct: 239 HSVAIDTHDLTSLFNIYT-NPPRWQDGMLPILVKVGFPSLTKSNTASLCVCHGKL-VFTS 296
Query: 305 YTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRS 364
YTCP+C A C +P+ C+ C + LVS + R +HHL F V L
Sbjct: 297 YTCPQCSAITCNIPSRCKCCQIYLVSPADVCRGFHHLCAPPEFTNVPADILG-----GCD 351
Query: 365 TCFGCQQSLLSSGNKPGLYVA--CPKCKKHFCLECDIYIHESLHNCPGCESL 414
TC C L +S G A CP C K FC CD +IH +LH CP C L
Sbjct: 352 TCASCSVELKNSVMYSGEDRAKQCPGCMKIFCRICDEFIHGTLHQCPFCIKL 403
>gi|449019861|dbj|BAM83263.1| similar to TFIIH subunit SSL1 [Cyanidioschyzon merolae strain 10D]
Length = 549
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 151/450 (33%), Positives = 232/450 (51%), Gaps = 72/450 (16%)
Query: 30 AWERSYADDRSWEALQEDESG---FLR-PIDNSAFYHAQYRRRLRDRSLVATTARIQK-- 83
AWER Y +RSWEA+ ++G F R +D H R L+D + A R+ +
Sbjct: 93 AWERRY--ERSWEAIGVSDAGGGIFRRDALDQQRQRHRDLERVLQDSAASAARRRVGRAL 150
Query: 84 GLIRYLYIVIDLSRAAAE----------MDFRPSRMAVVAKQVEAFVREFFDQNPLSQIG 133
GLIR+L + +DLS A D +PSR + + + FV++FF +N +SQ+
Sbjct: 151 GLIRFLVLALDLSAAVRSRSRSSLSSSSQDLKPSRWSAILSGAQYFVQDFFSENAVSQLA 210
Query: 134 LVTVKDGVANCLTDLGGSPESHIKAL------MGKL---GCSGDSSLQNALDLVQGLLSQ 184
+V ++DG+A ++++ GS HI AL K G G +SLQN L+L + +
Sbjct: 211 IVILQDGIAAQVSEMSGSVRLHIDALRSLQRGTNKFLHDGDGGQTSLQNCLELGLRIHAS 270
Query: 185 IPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS 244
+P +G RE+LI+Y LSTCDPGDI +TIQ C ++ IR SVIGL AE++I + + T G+
Sbjct: 271 VPRFGTREMLIVYGGLSTCDPGDIHKTIQNCVDASIRVSVIGLGAEVYILRATAERTQGT 330
Query: 245 YSVALDESHFKELIMEHAPP--------------PPAIAEFAIANLIKMGFPQRAGEGSI 290
Y V +D HF +L+ + PP P+ A + ++ MGFP + +
Sbjct: 331 YRVPMDNDHFHQLLRQQVPPPPPPPQASRSTKHLEPSEAPWTAMQMV-MGFPPKLARDRV 389
Query: 291 SICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDE- 349
+ + +G+ CPRC+ + E+P +C +CGL L S HLARSYHH+FP F+E
Sbjct: 390 -VVAIDTRKACRLGFECPRCRQWLSEVPGNCILCGLTLTSVLHLARSYHHIFPAPRFEER 448
Query: 350 -------------------VTPLCLNDPRNRS-----RSTCFGCQQSLLSSGNKPGLYVA 385
V+P + + + + C GC ++L K L +
Sbjct: 449 EEPSSSRASALMSDEEGFSVSPSSVPERMPDAAAPPVKWQCSGCSRTL---STKDDLQLQ 505
Query: 386 CPK-CKKHFCLECDIYIHESLHNCPGCESL 414
C C++ FC++CD +HE LH CP C ++
Sbjct: 506 CTGICRQLFCIDCDQLVHERLHTCPACLAM 535
>gi|402076515|gb|EJT71938.1| hypothetical protein GGTG_11190 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 540
Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 142/344 (41%), Positives = 194/344 (56%), Gaps = 42/344 (12%)
Query: 39 RSWEALQEDESGFLRPIDNSAFYHAQYRRR-LRDRSLVATTARIQKGLIRYLYIVIDLSR 97
RSW+ +E G L A+ RRR LRD T IQ+G+IR+L +V+D+S
Sbjct: 65 RSWDVAEELAEGGL---SLEGRIEAEKRRRVLRD------TTPIQRGIIRHLVLVLDMSL 115
Query: 98 AAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIK 157
A E D PSR V F REFFDQNP+SQ+ +V ++DGVA ++D G+P HI+
Sbjct: 116 AMDEKDMLPSRHRVAIAYAVDFAREFFDQNPISQLAIVGMRDGVAVRISDTSGNPADHIE 175
Query: 158 AL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKC 215
L + +L G+ SLQNAL++ +G L PS+G REV++++ ALS+ DPGDI ETI
Sbjct: 176 KLRQLVELPPMGNPSLQNALEMCRGALFNTPSHGTREVVMIFGALSSSDPGDIHETIDGL 235
Query: 216 KESKIRCSVIGLSAEMFICKHLC-----------------QDTGGSYSVALDESHFKELI 258
+IR S+IGLSA++FIC+ LC +D Y VA+D+ HF+EL+
Sbjct: 236 VTDRIRVSIIGLSAQVFICEDLCRRTNAGHSASEPVLVGGEDESSGYMVAMDDVHFRELL 295
Query: 259 MEHAPPPPA------------IAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYT 306
+ PP A A+L+ MGFP R ++C+CH G+
Sbjct: 296 LSVTRPPATRQSQLQQQGAAAGGGEAGASLLMMGFPSRTTGTDPALCACHNR-PTRDGFL 354
Query: 307 CPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEV 350
C RC +RVC LP +C CGL L+ S HLARSYHHLFP+ + EV
Sbjct: 355 CTRCGSRVCRLPAECPACGLTLILSTHLARSYHHLFPLRIWVEV 398
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 28/35 (80%), Gaps = 1/35 (2%)
Query: 378 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCE 412
++ G Y+ C C+KHFC++CD++ HE +HNCPGC+
Sbjct: 483 SESGRYM-CQVCRKHFCIDCDVFAHEVVHNCPGCQ 516
>gi|170585402|ref|XP_001897473.1| TFIIH basal transcription factor complex p44 subunit [Brugia
malayi]
gi|158595152|gb|EDP33725.1| TFIIH basal transcription factor complex p44 subunit, putative
[Brugia malayi]
Length = 361
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 133/338 (39%), Positives = 201/338 (59%), Gaps = 14/338 (4%)
Query: 19 DEDDNLNGGLEAWERSYADDRSW-EALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVAT 77
++DD G WE YAD + + L+EDESG + A+ ++RL +R
Sbjct: 2 NDDDEPEG--YTWEVDYADGLNIRDVLREDESGSIEKSVAKLILDAKRKKRLNNRP---- 55
Query: 78 TARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTV 137
A+++ G++RY+Y+VID S + A+ +PSR+AV K + F+ +F +QNP+SQ+G+V
Sbjct: 56 -AKVRLGIMRYVYLVIDCSFSMADKSIQPSRLAVTIKALNQFLDKFSEQNPISQVGVVVC 114
Query: 138 KDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLI 195
+D A L L G+ ++L + +L C G+ SL N+L L P + REV++
Sbjct: 115 RDKRAERLIPLTGNVRLVKESLSTITELLCHGEFSLHNSLMATIRSLHSYPGHASREVIL 174
Query: 196 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFK 255
+ ++LSTCDP I T + K IRCSV+ LSAE+F+ K LC T G + V LD SHF+
Sbjct: 175 IVASLSTCDPSSIFGTFELLKRYHIRCSVVSLSAEIFVFKKLCSITSGRHDVILDSSHFE 234
Query: 256 ELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHK-EVKV--GVGYTCPRCKA 312
++ EHA PP + A +++++MGFP S C CH+ EV+ G G+ CP+C A
Sbjct: 235 VILSEHA-IPPVCSRNAESSVVRMGFPAHESIDCPSFCLCHQSEVRPSGGRGFFCPQCGA 293
Query: 313 RVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEV 350
R C LP +CRIC L L+S+P LARS ++L P+ F+E+
Sbjct: 294 RYCSLPVECRICKLTLISAPQLARSLYNLLPLPAFEEI 331
>gi|189195190|ref|XP_001933933.1| TFIIH basal transcription factor complex p44 subunit [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187979812|gb|EDU46438.1| TFIIH basal transcription factor complex p44 subunit [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 460
Score = 234 bits (597), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 125/325 (38%), Positives = 184/325 (56%), Gaps = 30/325 (9%)
Query: 78 TARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTV 137
T Q+G+IR++ +V+DLS A E D RP+R + + +VREFF+QNP+SQ+ ++ +
Sbjct: 93 TKPFQRGIIRHVVLVLDLSEAMLEKDMRPNRFITMINFTQEYVREFFEQNPISQMSVLGM 152
Query: 138 KDGVANCLTDLGGSPESHIKALMGKLGC------SGDSSLQNALDLVQGLLSQIPSYGHR 191
DGV +++L G+P H+ A+ G G SLQNAL+L + L PS+G R
Sbjct: 153 HDGVCIRVSELSGNPAEHVAAIQGIRSKDDGKEPKGAPSLQNALELARATLYHTPSHGTR 212
Query: 192 EVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGG----SYSV 247
EV++++ +L + DPGDI +T++ C +IR SVIG+SA + IC + T Y++
Sbjct: 213 EVIVVFGSLLSLDPGDIHQTVKACVRDRIRVSVIGMSARLKICTEIVTRTNAGDESEYTI 272
Query: 248 ALDESHFKELIMEHAPPPPAIAEFAIAN------------LIKMGFPQRAGEGSISICSC 295
A D+ KEL++ PP +A L+ MGFP R E +++C+C
Sbjct: 273 ATDQEMLKELLLATTTPPVIRQSAPVATTTAAPSPESAAALMMMGFPSRVVEDQLTMCAC 332
Query: 296 HKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCL 355
H + +G GYTC RC A+VC LP C C L L+ S HLARSYHHLFP+ + V+
Sbjct: 333 HGNLTMG-GYTCSRCSAKVCSLPITCPSCQLTLLLSTHLARSYHHLFPLRNWATVS---W 388
Query: 356 NDPRNRSRSTCFGCQQSLLSSGNKP 380
+ R + C GC LSS +KP
Sbjct: 389 SRAREKGSKECVGC----LSSFSKP 409
>gi|330925787|ref|XP_003301194.1| hypothetical protein PTT_12637 [Pyrenophora teres f. teres 0-1]
gi|311324299|gb|EFQ90721.1| hypothetical protein PTT_12637 [Pyrenophora teres f. teres 0-1]
Length = 462
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 126/325 (38%), Positives = 185/325 (56%), Gaps = 30/325 (9%)
Query: 78 TARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTV 137
T Q+G+IR++ +V+DLS A E D RP+R + + +VREFF+QNP+SQ+ ++ +
Sbjct: 93 TKPFQRGIIRHVVLVLDLSEAMLEKDMRPNRFITMINFTQEYVREFFEQNPISQMSVLGM 152
Query: 138 KDGVANCLTDLGGSPESHIKALMGKLGC------SGDSSLQNALDLVQGLLSQIPSYGHR 191
DGV +++L G+P H+ A+ G G SLQNAL+L + L PS+G R
Sbjct: 153 HDGVCIRVSELSGNPAEHVAAIQGLRSKDDGKEPKGAPSLQNALELARATLYHTPSHGTR 212
Query: 192 EVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGG----SYSV 247
EV++++ +L + DPGDI +T++ C +IR SVIG+SA + IC + T Y++
Sbjct: 213 EVIVVFGSLLSLDPGDIHQTVKACVRDRIRVSVIGMSARLKICTEIVTRTNAGDESEYTI 272
Query: 248 ALDESHFKELIMEHAPPP------PAIAEFAI------ANLIKMGFPQRAGEGSISICSC 295
A D+ KEL++ PP PA A+ A L+ MGFP R E +++C+C
Sbjct: 273 ATDQEMLKELLLATTTPPVIRQSAPAATTPAVPPPESAAALMMMGFPSRVVEDQLTMCAC 332
Query: 296 HKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCL 355
H + +G GYTC RC +VC LP C C L L+ S HLARSYHHLFP+ + V+
Sbjct: 333 HGNLTMG-GYTCSRCSTKVCSLPITCPSCQLTLLLSTHLARSYHHLFPLRNWATVS---W 388
Query: 356 NDPRNRSRSTCFGCQQSLLSSGNKP 380
+ R + C GC L S +KP
Sbjct: 389 SRAREKGSKECVGC----LVSFSKP 409
>gi|406697522|gb|EKD00781.1| component of RNA polymerase transcription factor TFIIH, Ssl1p
[Trichosporon asahii var. asahii CBS 8904]
Length = 436
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 135/396 (34%), Positives = 214/396 (54%), Gaps = 53/396 (13%)
Query: 11 GEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLR 70
G +++ + +D + AWE +Y RSW+ ++EDE+G L+ + RR R
Sbjct: 27 GPSKKSRKGKDKANGKSVNAWEETY--KRSWDVVREDETGGLQAAVDQLIARG---RRKR 81
Query: 71 DRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLS 130
+ + + A ++ R + +D + + + +FV E+FDQNPL
Sbjct: 82 AVATITSAAHVR----RRRPLGLDERQGLPSHPY-----------LRSFVIEWFDQNPLG 126
Query: 131 QIGLVTVKDGVANCLTDLGGSPESHIKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSY 188
QIG++ +++ +A L + G+P+ I+AL K L +G+ SLQN L + +G +S +PS
Sbjct: 127 QIGIILLRNRLAQTLVPMCGNPQEIIEALADKRKLEPAGEPSLQNGLVMARGGMSHLPST 186
Query: 189 GHREVLILYSALSTCDPG---DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSY 245
EVL+L+SA+ST DP +I + + + +++R ++I LSAE+ ICK + + TGG +
Sbjct: 187 SSLEVLVLFSAISTADPDGSMNIHQVLDELVSARVRVTIISLSAEIKICKQIAERTGGRF 246
Query: 246 SVALDESHFKELIMEHAPPP------PAIAEF-------------------AIANLIKMG 280
VA+DE H+KEL+ E PPP P A + +L+ MG
Sbjct: 247 GVAIDEDHYKELLWETIPPPAQTITAPVTANVREALARGGRQAPGAPKRPPPLGDLLVMG 306
Query: 281 FPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHH 340
FP R S C+CH +K G GY CPRC A++C++PTDC +CGL +VSSPHLARS+
Sbjct: 307 FPTRLPGAGESFCACHGLLKRG-GYMCPRCGAKLCDVPTDCEVCGLMVVSSPHLARSFWL 365
Query: 341 LFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSS 376
LFP++ +D + L + R+ CFGC +S
Sbjct: 366 LFPVSKYDTLGRGVLT--KEAVRAECFGCDAPFPTS 399
>gi|299751185|ref|XP_001830111.2| RNA polymerase II transcription factor [Coprinopsis cinerea
okayama7#130]
gi|298409259|gb|EAU91776.2| RNA polymerase II transcription factor [Coprinopsis cinerea
okayama7#130]
Length = 430
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 132/360 (36%), Positives = 205/360 (56%), Gaps = 57/360 (15%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYL 89
WE SY RSW+ +QEDE+G L+ + R L+A A I++ +IR+L
Sbjct: 58 TWEASYT--RSWDTVQEDEAGSLQTSVEELMARGRRR------RLLAPAAPIRRTIIRHL 109
Query: 90 YIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
I++DLS++ + D RP+R + + F+ E+FDQNPL QIG+V ++ G+A+
Sbjct: 110 IIILDLSQSMMDRDMRPTRFDLTLQYTREFIAEWFDQNPLGQIGIVGMRAGLASTFVKFT 169
Query: 150 -----GSPESHIKALMG--KLGCSGDSSLQNALDLV---------QGLLSQIPSYGHREV 193
G+P+ ++A+ KL +G+ SLQNA+++ + + S +P++ RE+
Sbjct: 170 ECRRIGNPQEVLRAIADRHKLEPTGEPSLQNAIEMARSNMNNIANESVSSHLPTHSSREI 229
Query: 194 LILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG------GSYSV 247
LIL+ +L+TCDPG+I +T++ C ++KIR SV+ L+AEM IC+ LC TG G + V
Sbjct: 230 LILFGSLTTCDPGNIHDTLETCIKNKIRISVVALAAEMKICRELCDKTGDYIPKEGQFGV 289
Query: 248 ALDESHFKELIMEHAPPP-------PAIAEFA--------IANLIKMGFPQRAGEGS-IS 291
A++E H+K+L+ E PPP PA A A+L+ MGFP R E S +
Sbjct: 290 AMNEGHYKDLLFELVPPPAQKAAPRPAGPGSAPQPPSTNPAADLMMMGFPTRLPESSQPT 349
Query: 292 ICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLV----------SSPHLARSYHHL 341
+C CH E+K G+ CPRC+++VC++PTDC +CGL + S P L + HL
Sbjct: 350 LCVCHSELK-SQGFLCPRCQSKVCDVPTDCDVCGLMITIIAGDNEHCSSMPRLLTPFPHL 408
>gi|167376758|ref|XP_001734134.1| TFIIH basal transcription factor complex p44 subunit [Entamoeba
dispar SAW760]
gi|165904499|gb|EDR29715.1| TFIIH basal transcription factor complex p44 subunit, putative
[Entamoeba dispar SAW760]
Length = 362
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 127/365 (34%), Positives = 197/365 (53%), Gaps = 21/365 (5%)
Query: 57 NSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQV 116
NS+F+ R+ + R ++GL R + +ID+S + + D++P+R+ + ++
Sbjct: 11 NSSFHQWINWDRMNE---FKQQNRSRRGLQRKVIFIIDMSLSMIQEDYQPNRITFIQTKL 67
Query: 117 EAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALD 176
+ F EF+ NPLS+IGL+ ++ A S I+ M C G SLQ +LD
Sbjct: 68 KEFFEEFYIDNPLSEIGLICTRNKTAE--QQFPLSRNLIIQKEMKWGNCEGQMSLQISLD 125
Query: 177 LVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKH 236
L Q +LS + RE++I+ S+++TCDPG+I +TI+ K++ IRCSVI + EM I K
Sbjct: 126 LAQQILSNTSNSSSREIIIVTSSITTCDPGNIYDTIETLKKTTIRCSVISFAPEMHITKL 185
Query: 237 LCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKM--GFPQRAGEGSISICS 294
L + TGG Y ++E H + ++ PP I++ GFP++ +IC
Sbjct: 186 LTKITGGDYHTIMNEKHAENVLNTFIIPPIYKENTYEPKTIQLYIGFPKQLNIP--TICE 243
Query: 295 CHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLC 354
CH ++ + + CP C CELP C+IC L+ S H ARSYH +FPI PF +T +
Sbjct: 244 CHSKIDIN-HFECPICNFCYCELPIQCKICNAILLLSHHFARSYHFMFPIEPFKIITMI- 301
Query: 355 LNDPRNRSRSTCFGCQQSLLSSGNK----PGLYVACPKCKKHFCLECDIYIHESLHNCPG 410
+ + CFGC + + K P C KC K++C ECD +IH+ L+NCPG
Sbjct: 302 ------KPQEKCFGCGKEIDDRIEKKEEEPVNIYQCKKCLKYYCNECDSFIHDVLYNCPG 355
Query: 411 CESLR 415
CES +
Sbjct: 356 CESKK 360
>gi|221482733|gb|EEE21071.1| conserved hypothetical protein [Toxoplasma gondii GT1]
Length = 627
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 150/432 (34%), Positives = 208/432 (48%), Gaps = 48/432 (11%)
Query: 7 KRLNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYR 66
+ L G + +ED G AWE +RSW+ L E GF+ +A + R
Sbjct: 173 QELEGNGTDAAAEEDLY---GQYAWE--CEAERSWDQLIESSEGFVLLHGGAAEEGVKTR 227
Query: 67 RRLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQ 126
R R + +I+KG+IR L ++ID+S A E DFRP R+ V + E F+ F Q
Sbjct: 228 RVDRRQQ---HEPQIKKGIIRSLVLLIDMSEAMREKDFRPDRLRCVCQLAEEFIGTFLLQ 284
Query: 127 NPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGC--------------------- 165
NPL+Q+ V + A L G + G
Sbjct: 285 NPLAQLAQVALIGPSAEPLAARGEAARDSAAVSARPSGSASMQLFSSSASESIAALREKR 344
Query: 166 ------SGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESK 219
+G SL N L L + LL+ +P Y REVL+L+ +L TCD G I ETI K+S
Sbjct: 345 KHPGVGTGVPSLNNGLHLAKDLLAGVPPYCTREVLVLFGSLRTCDVGCIEETIAAVKKSN 404
Query: 220 IRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKM 279
I C+VI L+AE+ + K+LCQ TGG + V L H + L+M+H PP A LI+M
Sbjct: 405 ICCNVICLAAELHVLKNLCQATGGRHDVPLHREHLRALLMQHTLPPAWSASMQPC-LIRM 463
Query: 280 GFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYH 339
GFP + ++CSCH+ + Y CP+C A++C P CR C L LVS ++RS+H
Sbjct: 464 GFPSLKSTSTAALCSCHQHLTFS-SYVCPQCGAKLCTTPNRCRCCFLHLVSPADISRSFH 522
Query: 340 HLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDI 399
L P PFD P+ + P ++ C C L G + CP C + FC +CDI
Sbjct: 523 SLCPPLPFD---PVPADAP--EAKRLCACCTTQLDRGGAQ------CPDCGEIFCHDCDI 571
Query: 400 YIHESLHNCPGC 411
Y HE L C C
Sbjct: 572 YSHEQLRQCAFC 583
>gi|237841927|ref|XP_002370261.1| general transcription factor IIH polypeptide 2, putative
[Toxoplasma gondii ME49]
gi|211967925|gb|EEB03121.1| general transcription factor IIH polypeptide 2, putative
[Toxoplasma gondii ME49]
gi|221503074|gb|EEE28780.1| btf, putative [Toxoplasma gondii VEG]
Length = 627
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 150/432 (34%), Positives = 208/432 (48%), Gaps = 48/432 (11%)
Query: 7 KRLNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYR 66
+ L G + +ED G AWE +RSW+ L E GF+ +A + R
Sbjct: 173 QELEGNGTDAAAEEDLY---GQYAWE--CEAERSWDQLIESSEGFVLLHGGAAEEGVKTR 227
Query: 67 RRLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQ 126
R R + +I+KG+IR L ++ID+S A E DFRP R+ V + E F+ F Q
Sbjct: 228 RIDRRQQ---HEPQIKKGIIRSLVLLIDMSEAMREKDFRPDRLRCVCQLAEEFIGTFLLQ 284
Query: 127 NPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGC--------------------- 165
NPL+Q+ V + A L G + G
Sbjct: 285 NPLAQLAQVALIGPSAEPLAARGEAARDSAAVSARPSGSASMQLFSSSASESIAALREKR 344
Query: 166 ------SGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESK 219
+G SL N L L + LL+ +P Y REVL+L+ +L TCD G I ETI K+S
Sbjct: 345 KHPGVGTGVPSLNNGLHLAKDLLAGVPPYCTREVLVLFGSLRTCDVGCIEETIAAVKKSN 404
Query: 220 IRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKM 279
I C+VI L+AE+ + K+LCQ TGG + V L H + L+M+H PP A LI+M
Sbjct: 405 ICCNVICLAAELHVLKNLCQATGGRHDVPLHREHLRALLMQHTLPPAWSASMQPC-LIRM 463
Query: 280 GFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYH 339
GFP + ++CSCH+ + Y CP+C A++C P CR C L LVS ++RS+H
Sbjct: 464 GFPSLKSTSTAALCSCHQHLTFS-SYVCPQCGAKLCTTPNRCRCCFLHLVSPADISRSFH 522
Query: 340 HLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDI 399
L P PFD P+ + P ++ C C L G + CP C + FC +CDI
Sbjct: 523 SLCPPLPFD---PVPADAP--EAKRLCACCTTQLDRGGAQ------CPDCGEIFCHDCDI 571
Query: 400 YIHESLHNCPGC 411
Y HE L C C
Sbjct: 572 YSHEQLRQCAFC 583
>gi|349604001|gb|AEP99672.1| General transcription factor IIH subunit 2-like protein, partial
[Equus caballus]
Length = 274
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 112/255 (43%), Positives = 161/255 (63%), Gaps = 11/255 (4%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIITKSKRAEKLTELSG 122
Query: 151 SPESHIKALMGKLG--CSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P HI +L + C G+ SL N+L + L +P + REVLI++S+L+TCDP DI
Sbjct: 123 NPRKHITSLKKAVAMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSDI 182
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
IQ K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA
Sbjct: 183 YGLIQTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPAS 242
Query: 269 AEFAIANLIKMGFPQ 283
+ + +LI+MGFPQ
Sbjct: 243 SN-SECSLIRMGFPQ 256
>gi|440296353|gb|ELP89180.1| TFIIH basal transcription factor complex p44 subunit, putative
[Entamoeba invadens IP1]
Length = 358
Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 123/345 (35%), Positives = 186/345 (53%), Gaps = 19/345 (5%)
Query: 72 RSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQ 131
R+ + +R ++GL R + VID+S DF P+R++ + ++ F FF NPLSQ
Sbjct: 23 RNEFSADSRSRRGLQRSVLFVIDMSYPMNYEDFHPTRISFINTKMNNFFDNFFVDNPLSQ 82
Query: 132 IGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHR 191
IGLV ++ A+ + L + + GK C+G S+Q +L+L L R
Sbjct: 83 IGLVATRNSTADIICPLTRNISKLKETAWGK--CNGSISVQISLELCLQFLKDTKDMTSR 140
Query: 192 EVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDE 251
E++ + SA+STCDPG+I ETI K +++ IR SVI +SAE+ + + + + TGG Y ++E
Sbjct: 141 EIVFVTSAISTCDPGNIFETIGKVRDNLIRVSVISISAEVHVMRQMTKVTGGDYFTIMNE 200
Query: 252 SHFKELIMEHAPPP--PAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVG-YTCP 308
H +E+I PP A + L+ +GFP+ +IC CH K+G+G Y CP
Sbjct: 201 KHAEEVIKTFIEPPRYKATGKEPKVELLFVGFPRELERS--TICECHS--KIGLGHYECP 256
Query: 309 RCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFG 368
C CELP +C++C L+ S H ARS+H LFP+ PF + CF
Sbjct: 257 VCGFCYCELPVECKVCKANLIFSHHFARSFHFLFPVKPF----------VLEKEPEVCFA 306
Query: 369 CQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 413
C + ++ + C KC K FC C+I+IH+ L NCPGCE+
Sbjct: 307 CGKKYEEKKDEEMKFWKCEKCSKSFCETCNIFIHDVLFNCPGCEN 351
>gi|403367585|gb|EJY83616.1| P44/SSL1-like protein [Oxytricha trifallax]
Length = 499
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 118/329 (35%), Positives = 186/329 (56%), Gaps = 18/329 (5%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLV--ATTARIQKGLIR 87
AWE+ + W+ L+E D S FY ++ ++L + + + +K LIR
Sbjct: 8 AWEKDIS--ARWKTLKE--------ADISEFYESEQSQKLHKKEAIDKFNQSIKRKSLIR 57
Query: 88 YLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTD 147
YL +VID S AA + + RP+R V+ + FV ++FDQNPLS + V A L+D
Sbjct: 58 YLTVVIDFSSAAKKQEMRPNRAIVIKSYLSNFVIDYFDQNPLSCLSFVATFRERAIILSD 117
Query: 148 LGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 207
SP+ HI+ + G++S+QN+L+L + +PSY +E+LI++ +++ CDPG+
Sbjct: 118 FNDSPQDHIEKICRFSDLEGNASIQNSLELCIENFTAVPSYAKKEILIIFCSITNCDPGN 177
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 267
I ET K K I CSVI LSA MFI + + Q TGG + ++ D++HF++L+ P +
Sbjct: 178 IFETYDKLKSKMITCSVISLSASMFILQKVTQLTGGEFFLSKDQAHFQDLLKRLLVPKES 237
Query: 268 IAEFA-----IANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCR 322
I + LIKMGFP R ++CSCH +++ V Y CP C++ CEL + C+
Sbjct: 238 IEDLTQRKQQQNTLIKMGFPMRKILSYPAVCSCHNDLRFLV-YICPNCQSPSCELSSFCK 296
Query: 323 ICGLQLVSSPHLARSYHHLFPIAPFDEVT 351
+C + LVS+ HL+R+ H +A F +T
Sbjct: 297 VCQIMLVSAAHLSRTAQHNQNLANFQRLT 325
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 339 HHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECD 398
+ +FP+ V + D + C GC + + +S + + V C CKK +CL+CD
Sbjct: 427 NEIFPLNSMKTVGSILQKDGHSY---YCNGCSKRVEASFDNVDI-VICTICKKFYCLDCD 482
Query: 399 IYIHESLHNCPGCESLR 415
I+IHE+L +CP C+ ++
Sbjct: 483 IFIHETLLSCPTCQLIQ 499
>gi|407044792|gb|EKE42827.1| TFIIH basal transcription factor complex subunit, putative
[Entamoeba nuttalli P19]
Length = 363
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 121/341 (35%), Positives = 189/341 (55%), Gaps = 20/341 (5%)
Query: 80 RIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKD 139
R ++GL R + +ID+S + + D++P+R+ + +++ F EF+ NPLS+IGL+ ++
Sbjct: 31 RSRRGLQRKVIFIIDMSLSMNQEDYQPNRITFIQTKLKEFFEEFYIDNPLSEIGLICTRN 90
Query: 140 GVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSA 199
A S I+ M C G SLQ +LDL Q +LS + RE++I+ S+
Sbjct: 91 KTAE--QQFPLSRNLIIQKEMKWGNCEGQMSLQISLDLAQQILSTTSNSSSREIIIVTSS 148
Query: 200 LSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIM 259
++TCDPG+I +TI+ K++ IRCSVI + EM I + L + TGG Y ++E H ++++
Sbjct: 149 ITTCDPGNIYDTIETLKKTTIRCSVISFAPEMHITRLLTKVTGGDYHTIMNEKHAEDVLH 208
Query: 260 EHAPPPPAIAEFAIANLIKM--GFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCEL 317
PP I++ GFP++ +IC CH ++ + + CP C CEL
Sbjct: 209 TFIIPPIYKENAYEPKTIQLYIGFPKQLNVP--TICECHSKIDIN-HFECPICGFCYCEL 265
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 377
P C+IC L+ S H ARSYH +FPI PF + + + + CFGC + +
Sbjct: 266 PIQCKICNAILLLSHHFARSYHFMFPIEPFKVIAMI-------KPQEKCFGCGKEIDDRM 318
Query: 378 NKP-----GLYVACPKCKKHFCLECDIYIHESLHNCPGCES 413
K +Y C KC K++C ECD +IH+ L+NCPGCES
Sbjct: 319 EKKEEETVNVY-QCKKCLKYYCNECDSFIHDVLYNCPGCES 358
>gi|67479545|ref|XP_655154.1| TFIIH basal transcription factor complex subunit [Entamoeba
histolytica HM-1:IMSS]
gi|56472271|gb|EAL49768.1| TFIIH basal transcription factor complex subunit, putative
[Entamoeba histolytica HM-1:IMSS]
gi|449704914|gb|EMD45073.1| TFIIH basal transcription factor complex p44 subunit, putative
[Entamoeba histolytica KU27]
Length = 363
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 120/340 (35%), Positives = 190/340 (55%), Gaps = 18/340 (5%)
Query: 80 RIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKD 139
R ++GL R + +ID+S + + D++P+R+ + +++ F EF+ NPLS+IGL+ ++
Sbjct: 31 RSRRGLQRKVIFIIDMSLSMNQEDYQPNRITFIQTKLKEFFEEFYIDNPLSEIGLICTRN 90
Query: 140 GVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSA 199
A S I+ M C G SLQ +LDL Q +LS + RE++I+ S+
Sbjct: 91 KTAE--QQFPLSRNLIIQKEMKWGNCEGQMSLQISLDLAQQILSTTSNSSSREIIIVTSS 148
Query: 200 LSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIM 259
++TCDPG+I +TI+ K++ IRCSVI + EM I + L + TGG Y ++E H ++++
Sbjct: 149 ITTCDPGNIYDTIETLKKTTIRCSVISFAPEMHITRLLTKVTGGDYHTIMNEKHAEDVLH 208
Query: 260 EHAPPPPAIAEFAIANLIKM--GFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCEL 317
PP I++ GFP++ +IC CH ++ + + CP C CEL
Sbjct: 209 TFIIPPIYKENAYEPKTIQLYIGFPKQLNVP--TICECHSKIDIN-HFECPICGFCYCEL 265
Query: 318 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL---L 374
P C+IC L+ S H ARSYH +FPI PF + + + + CFGC + + +
Sbjct: 266 PIQCKICNAILLLSHHFARSYHFMFPIEPFKVIAMI-------KPQEKCFGCGKEIDDRI 318
Query: 375 SSGNKPGLYV-ACPKCKKHFCLECDIYIHESLHNCPGCES 413
+ + V C KC K++C ECD +IH+ L+NCPGCES
Sbjct: 319 EKKEEETVNVYQCKKCLKYYCDECDSFIHDVLYNCPGCES 358
>gi|71027729|ref|XP_763508.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350461|gb|EAN31225.1| hypothetical protein, conserved [Theileria parva]
Length = 447
Score = 221 bits (562), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 136/452 (30%), Positives = 216/452 (47%), Gaps = 79/452 (17%)
Query: 15 EEEEDEDDNLNGGLEAWERSYAD---DRSWEALQEDES--GFLRPIDNSAFYH---AQYR 66
E E++ + N N EA+++ + D+SWE L E + F++P + Y +Y+
Sbjct: 16 EYEQNTEINNNTEDEAYQQYAWELDVDKSWEQLVEKDGVLQFIKP--QTRLYQEFDLEYQ 73
Query: 67 RRLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQ 126
L+ +L R G+IR + I+ D+S EMDF+P R+ ++ F+ E +
Sbjct: 74 NNLKQHNLNLIYKR---GIIRSIMILFDMSEQMHEMDFKPDRLYCAFNSLKEFLGELYSS 130
Query: 127 NPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKL--GCSGDSSLQNALDLVQGLLSQ 184
P++Q+G+V +++ + N +T G +P ++ L L G G SSLQN L++ ++
Sbjct: 131 GPITQVGIVVMRNKICNVITQFGTNPNEQMELLSSVLKDGPEGSSSLQNGLEMCMKIMCD 190
Query: 185 IPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICK--------- 235
+P Y RE+L+++ + T DPG+I+ T+ + K++ I + I LS E++I K
Sbjct: 191 LPYYSTREILVIFGSNRTLDPGNILLTLDQLKQNFITVNSISLSPELYILKVALLRYGVR 250
Query: 236 ------------------------------------HLCQDTGGSYSVALDESHFKELIM 259
++C++TGG+YSVA D +H K L
Sbjct: 251 SNGTSYLLVILPQSYPPQWDSLWPLWLLVPHIYTSYNICKETGGNYSVARDVNHLKLLFN 310
Query: 260 EHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPT 319
PPP + LIK+ FP S+S+C CH +V V Y CP+C + C +PT
Sbjct: 311 NLTIPPPW-KSWMEPILIKVSFPPMKRGTSVSLCCCHNKV-VNTVYICPQCHSNSCYIPT 368
Query: 320 DCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNK 379
C+ CG+ +VS P ++R++HHL P PF V C GC + S
Sbjct: 369 KCQGCGIFMVSPPDISRAFHHLIPPKPFHHV----------EGGMDCVGCNLRVESG--- 415
Query: 380 PGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
C C FC CD YIH+ LH CP C
Sbjct: 416 ----YECQDCGGLFCQHCDKYIHQDLHQCPKC 443
>gi|238610326|ref|XP_002397695.1| hypothetical protein MPER_01834 [Moniliophthora perniciosa FA553]
gi|215472703|gb|EEB98625.1| hypothetical protein MPER_01834 [Moniliophthora perniciosa FA553]
Length = 251
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 111/248 (44%), Positives = 166/248 (66%), Gaps = 13/248 (5%)
Query: 103 DFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL-GGSPESHIKALMG 161
D RP+R +++ + FV E+FDQNPL Q+G+V + + ++ G+P+ ++++
Sbjct: 5 DMRPTRFSLMLQYAREFVLEWFDQNPLGQMGVVVPIEVGSLIYSNFEPGNPQDVLRSISD 64
Query: 162 --KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESK 219
KL GD SLQNA+D+ + ++ +P++ RE++IL+ +L+T DPG+I ET+ +C ++K
Sbjct: 65 RHKLEPMGDPSLQNAIDMARNSMNHLPTHSSREIVILFGSLTTVDPGNIHETLDECVKNK 124
Query: 220 IRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPP--------AIAEF 271
IR S++ L+AEM IC+ LC TGG + VAL+E HFK+L+ E PPP A +
Sbjct: 125 IRISLVALAAEMRICRDLCIKTGGEFGVALNEGHFKDLLFELIPPPAQRAISKAGAGSTN 184
Query: 272 AIANLIKMGFPQRAGEGS-ISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVS 330
A ANL+ MGFP R + S S+C CH ++K G+ CPRC A+VC++PTDC ICGL +VS
Sbjct: 185 ASANLMMMGFPTRLPDASPPSLCVCHSDLKSD-GFLCPRCLAKVCDVPTDCDICGLMIVS 243
Query: 331 SPHLARSY 338
SPHLARSY
Sbjct: 244 SPHLARSY 251
>gi|170035934|ref|XP_001845821.1| btf [Culex quinquefasciatus]
gi|167878420|gb|EDS41803.1| btf [Culex quinquefasciatus]
Length = 367
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 113/292 (38%), Positives = 174/292 (59%), Gaps = 21/292 (7%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +++WEA++ED+ G + A+ +R+ + + G++R+LY
Sbjct: 12 WETGY--EKTWEAIKEDDDGLVEGSIAEIIQKAKRKRQAMKKGFS------KLGMMRHLY 63
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+++D S A + D +P+R+ K +E F+ EFFDQNP+SQ+G++ +K A +T+LGG
Sbjct: 64 VILDCSEAMSVPDLKPTRLLCTLKLLEIFIEEFFDQNPISQLGVIAMKAKRAEKITELGG 123
Query: 151 SPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
S HIKA+ + KL +G+ SLQN L+L L +PS+ RE+L++ +L+TCDP DI
Sbjct: 124 SCRKHIKAVGNLNKLNLTGEPSLQNGLELALKTLKMVPSHASREILVVMGSLTTCDPTDI 183
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
TI K IRCSV+ LSAE+ +CK LC +TGG Y LD+SHFK+ +++H PP A
Sbjct: 184 HITIDALKSEGIRCSVVSLSAEIRVCKFLCTETGGVYGAVLDDSHFKDQLLQHIDPPQAG 243
Query: 269 AEFAIANLIKMGFPQ-RAGEGS---ISICSCHKEVK------VGVGYTCPRC 310
+ + +IKMGFP + EG +++C CH + GY CP+C
Sbjct: 244 NQQEFS-MIKMGFPHGKTEEGKDPPLTMCMCHIDSTDEPSKLTSGGYHCPQC 294
>gi|156083725|ref|XP_001609346.1| transcriptional factor 2 subunit [Babesia bovis T2Bo]
gi|154796597|gb|EDO05778.1| transcriptional factor 2 subunit [Babesia bovis]
Length = 364
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 112/325 (34%), Positives = 180/325 (55%), Gaps = 9/325 (2%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQK-GLIRY 88
AWE+ + D+SWE L D+ G L+ + + +L + IQK G++R
Sbjct: 38 AWEKDF--DKSWEQLV-DKDGVLQFVQQKDVSNTDVTSD-GTVALSEADSSIQKRGVVRN 93
Query: 89 LYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL 148
+ I+ D S E+DF+P R+ A V+ ++ F Q P++Q+ ++T+++ + ++ L
Sbjct: 94 IVIMFDTSDGMREVDFKPDRLHCAAGAVKGLIQGLFHQGPMTQLAIITMRNKRSTMVSKL 153
Query: 149 GGSPESHIKALMGKL--GCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPG 206
G P HI L K+ G G SLQN L++ +L+ +P Y RE+L+++ A T DPG
Sbjct: 154 GTPPSEHIALLDEKIKEGTDGVPSLQNGLEMAISILTDMPPYTTREILVIFGATKTFDPG 213
Query: 207 DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPP 266
+I+ T+QK K+ + S + ++ EM+I KH+C +TGGSY+V D H K L+ +H PP
Sbjct: 214 NILTTLQKLKDEHVSVSAVSIAPEMYILKHICTETGGSYAVCKDSVHLKSLLNDHT-MPP 272
Query: 267 AIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGL 326
+ L K+GFP + S+C CH + Y CP+C ++ C +PT C+ C L
Sbjct: 273 KWRPWMEPVLTKVGFPPLEKANTASLCICHSTLTYK-AYICPQCHSKSCAIPTKCKCCRL 331
Query: 327 QLVSSPHLARSYHHLFPIAPFDEVT 351
LVS P ++R +H L P PF V+
Sbjct: 332 YLVSPPDISRMFHQLIPPKPFINVS 356
>gi|118377110|ref|XP_001021737.1| transcription factor ssl1 family protein [Tetrahymena thermophila]
gi|89303503|gb|EAS01491.1| transcription factor ssl1 family protein [Tetrahymena thermophila
SB210]
Length = 372
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 114/352 (32%), Positives = 191/352 (54%), Gaps = 17/352 (4%)
Query: 67 RRLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQ 126
+++ D+ +TT +K L+R++YI++D ++++ +DF+PSR+ + ++ F++ FFD
Sbjct: 31 KKIIDKGYTSTT---KKSLLRFVYIIVDTTQSSTRVDFKPSRIGLTQIYLKNFIKNFFDS 87
Query: 127 NPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGC--SGDSSLQNALDLVQGLLSQ 184
NPLS + + ++G L + S S + + KL D SL L+ + ++
Sbjct: 88 NPLSVLSIGKTQNGQCITLQEFTSSI-SLLDKTIEKLVVDEKEDFSLFECLNETFNIFAE 146
Query: 185 IPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS 244
P Y REV+++ S ST D GDI E I K K+ KI ++I L+A+ FI + L ++T G
Sbjct: 147 APPYAFREVVLIQSTPSTKDKGDINEQINKAKQCKITFNIISLNAKTFIFQKLTKETQGK 206
Query: 245 YSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVG 304
Y AL E ++ L+ + PP I LI++GFP + +C+CH E+K
Sbjct: 207 YDTALHEKDYENLLNSYCEPPQQILNKTEKTLIQVGFPNKKYSKISVLCACHMELKTNF- 265
Query: 305 YTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFD----EVTPLCLNDPRN 360
Y CP+CK++ CE+P+ C C L L+ H+ +SYH + F+ E + + ++
Sbjct: 266 YICPQCKSKNCEVPSKCSGCQLNLILPLHITKSYHFSQNLKEFELLGQEKSNNSMETEQD 325
Query: 361 RSRST-CFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
++++ C GC + + K + C CK FCLECDI IH+ NCP C
Sbjct: 326 KTQNILCNGCSEDI-----KEDYFSKCQNCKSIFCLECDILIHKQKLNCPKC 372
>gi|300123288|emb|CBK24561.2| unnamed protein product [Blastocystis hominis]
Length = 626
Score = 207 bits (527), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 121/320 (37%), Positives = 174/320 (54%), Gaps = 26/320 (8%)
Query: 103 DFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGK 162
D +PSR+ VV Q++ F+R+FF N LS + ++ D A LT L + H+ AL K
Sbjct: 5 DLKPSRLEVVVSQLKQFIRDFFYHNSLSSLCIIVSHDRRAFQLTPLSRHMKEHLNAL-DK 63
Query: 163 LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRC 222
L CSG SLQ +LD+ + PS +E++ L S++STCDP DI +TI +E I+C
Sbjct: 64 LTCSGKFSLQLSLDIAIKTMELAPSQFAKEIICLISSISTCDPRDIYKTISIIQEKHIQC 123
Query: 223 SVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPP----PAI-------AEF 271
SV+ LS E+++ + L Q T G ++V D +H PP P + A
Sbjct: 124 SVMSLSGEVYLFQKLAQITSGIFAVPEDPQQVHHFFSQHISPPINSDPIVLVKREDGATV 183
Query: 272 AIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSS 331
+ +MGFP IC+CH Y CPRC++ VCELP C +C L LV
Sbjct: 184 THREICEMGFPNNVQLS--HICACHVRF-CSKFYECPRCRSYVCELPVRCPVCMLMLVDY 240
Query: 332 PHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKK 391
HL +SYHHLFP F+E ND ++ TC+GC S++ G + + CPKC K
Sbjct: 241 THLTQSYHHLFPPKNFEEC-----ND--HKPGITCYGC-CSVIKEGE---ICLQCPKCMK 289
Query: 392 HFCLECDIYIHESLHNCPGC 411
+FC CD ++H+++ +CPGC
Sbjct: 290 YFCQTCDAFVHDNIFHCPGC 309
>gi|294911611|ref|XP_002778020.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239886141|gb|EER09815.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 421
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 131/410 (31%), Positives = 215/410 (52%), Gaps = 43/410 (10%)
Query: 29 EAWERSYADDRSWEALQEDESGFLRPIDNSAF---YHAQYRRRL-----RDRSLV-ATTA 79
AWE Y +SW + +D+ G L D ++ Y Y L D LV +
Sbjct: 27 HAWEADYT--KSWINITKDQHGKLVVRDEASIARKYPRNYDGVLPVSAGEDGELVHKQSM 84
Query: 80 RIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQV-EAFVREFFDQNPLSQIGLVTVK 138
+++GL+R+LY+V+D+S A MD++ +R+ V + F+ ++FD NP+S + ++ ++
Sbjct: 85 ALKRGLLRFLYLVVDMSSAMQNMDYKQNRLDFVVSHLCRNFIPQYFDLNPISNLSVLALR 144
Query: 139 DGVANCLTDLGGSPESHIKALM--GKLGCSGDSSLQNALDLV-QGLLSQIPSYGHREVLI 195
D A+ +T + G P S ++ ++ G SG +SL NAL+ V Q +P YG REVLI
Sbjct: 145 DQRAHFVTRMSGQPASQMERVLQFSTGGASGSASLVNALEAVGQAAKGSLPRYGTREVLI 204
Query: 196 LYSALSTCDPGDIMETIQKC--------KESKIRCSVIGLSAEMFICKHLCQDTGGSYSV 247
++ +L + DP + I C K + +R SVI LS E++ + + + TGG++SV
Sbjct: 205 VWGSLHSADPPTSGKLIPDCVDRLIEEIKPNSVRVSVISLSPELYALRKVVEMTGGTFSV 264
Query: 248 ALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFP-QRAGEGSISI-----CSCHKEVKV 301
A HFK L+ +H PP ++ + IKMGFP +RA +G+ + C CH ++
Sbjct: 265 ATSPIHFKRLMQKHLTPPNWVSS---PSYIKMGFPVRRACDGNHTADPPIKCMCHNRLQK 321
Query: 302 GVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNR 361
Y CP+C + VCE+P +C +C L LV L + + H++ + P + P ++ P++
Sbjct: 322 TFVYICPQCHSPVCEIPVNCPVCRLPLVDDDALKKHHRHIYSM-PTYTLLP-TVDYPKSY 379
Query: 362 SRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
TC C G + C +C C ECD++ H L +CPGC
Sbjct: 380 ---TCQFCGTDFTEGGAR------CDQCLSDVCYECDMFAHNKLRHCPGC 420
>gi|312076202|ref|XP_003140756.1| general transcription factor IIH subunit 2 [Loa loa]
Length = 1131
Score = 204 bits (520), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 105/252 (41%), Positives = 149/252 (59%), Gaps = 19/252 (7%)
Query: 165 CSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSV 224
C G+ SL N+L L P Y REV+++ ++LSTCDP +I T + K IRCSV
Sbjct: 95 CHGEFSLHNSLMAAIKSLHSYPGYASREVILIVASLSTCDPSNIFGTFELLKRYHIRCSV 154
Query: 225 IGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQR 284
I LSAE+FI + LC T G ++V LD +HF+ ++ EHA PP + + A +++++MGFP
Sbjct: 155 ISLSAEVFIFRKLCSATSGCHNVILDSTHFEVILNEHANPPIS-SRNAESSVVRMGFPAH 213
Query: 285 AGEGSISICSCHK-EVKV--GVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHL 341
S S C CH+ E++ G G+ CP+C AR C LP +CRIC L L+S+P LARS H+L
Sbjct: 214 ESIDSPSFCLCHQSEIRPSGGRGFFCPQCGARYCSLPVECRICKLTLISAPQLARSLHNL 273
Query: 342 FPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYI 401
P+ F+E+ + + CF C + L C CK FC++CD+ +
Sbjct: 274 LPLPAFEEI---------DTTERVCFACIRQLDDKS------FVCKNCKSTFCIDCDVLL 318
Query: 402 HESLHNCPGCES 413
HESL CPGC+S
Sbjct: 319 HESLQICPGCKS 330
>gi|313240907|emb|CBY33192.1| unnamed protein product [Oikopleura dioica]
Length = 384
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 134/409 (32%), Positives = 202/409 (49%), Gaps = 43/409 (10%)
Query: 19 DEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATT 78
DE + + G WE Y +R+WEAL+ED++G L ++A +RL + +A
Sbjct: 2 DEGGDKHSGYR-WEGGY--ERTWEALREDDTGALISGSSAA-------KRLFAKKRLAQE 51
Query: 79 ARIQKGLIRYLYIVIDLSRAAAEMDFR----PSRMAVVAKQVEAFVREFFDQNPLSQIGL 134
A + ++R+ + +DLSR+ A+ D R P+R + ++ FV +FF PL Q+ L
Sbjct: 52 AGQRIHIVRHCVLALDLSRSMADPDLRIDRYPNRAGCAVRSLKEFVPKFFASCPLGQLAL 111
Query: 135 VTVKDGVANCLTDLGGSPESHIKAL----MGKLGCSGDSSLQNALDLVQGLLSQIPSYGH 190
V +++ AN + LGGS +KAL + G S+ N + + +L+ + + +
Sbjct: 112 VILQNKRANIVVPLGGSEARLLKALNDIEVKGFKTGGQCSMVNGIAASKSMLNAVGEHSN 171
Query: 191 REVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALD 250
RE++ + +L+T D TI+ IRCSV+ LSAE+ I K L + T G Y V LD
Sbjct: 172 REIIFVVGSLNTIDVTSPFATIETVANEGIRCSVVSLSAEVNIWKKLAERTDGKYFVPLD 231
Query: 251 ESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRC 310
+ +E PP + L+KMGFPQ+ + Y CP+C
Sbjct: 232 PIDVSDK-LEELSRPPVESSSRQGVLVKMGFPQKEADAR---------------YICPQC 275
Query: 311 KARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTP--------LCLNDPRNRS 362
+ RV +PT C +C L LVS+ HLAR YHHLFP + P L L +
Sbjct: 276 RTRVKAIPTLCDVCKLSLVSAAHLARCYHHLFPPSSVTPSIPEQSGEEIDLELERSQFEK 335
Query: 363 RSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
C GC + +S + +V C KC C ECD +I E LH+CPGC
Sbjct: 336 IRPCVGCNYAPISV-EEGRQFVVCDKCLNSLCGECDGFIDEHLHSCPGC 383
>gi|389586086|dbj|GAB68815.1| transcription factor [Plasmodium cynomolgi strain B]
Length = 401
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 113/385 (29%), Positives = 202/385 (52%), Gaps = 26/385 (6%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYL 89
WE+ +RSW L E+ +G L+ + + +++ + + A ++KG+ R++
Sbjct: 35 TWEQDV--ERSWNLLVEN-NGILQHVSQENL-EEKCKQKYKKNQVCA----LRKGIFRHI 86
Query: 90 YIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
I+ D+S + E DF+P R+ VV + VE+F+ FF +NP+ +G+V +K+ A + L
Sbjct: 87 IILFDMSSSMKERDFKPDRINVVLESVESFLTNFFFKNPVGHVGVVALKNSSAKLIQPLT 146
Query: 150 GSPESHIKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 207
+ + +KAL+ + +G G SLQ L++ LL IP YG +E+LI+Y ++ TCD +
Sbjct: 147 SNMDDIMKALLKERSMGLQGSPSLQQGLEIAHDLLIDIPLYGTKEILIIYGSIRTCDKKN 206
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 267
I+ + ++ + + + ++ EM I KH+C++T G+Y + + ++ M + P
Sbjct: 207 ILNILNLIVKNNMHVNCVSIAPEMHILKHICEETNGAYKICMTKNALLNE-MNNVTETPL 265
Query: 268 IAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQ 327
LI + FP + + +CSCH ++ Y C C + C++P+ C++CG+
Sbjct: 266 WMSGMEPQLIHICFPVKKKISTQIMCSCHNQLNTDT-YICNFCNSYTCKIPSKCKVCGMH 324
Query: 328 LVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSR-STCFGCQQSLLSSGNKPGLYVAC 386
L+S L+ ++L + +PL L + S C C + L ++ C
Sbjct: 325 LISMHDLSHITNNL-------QGSPLFLEIKNEKDGPSVCVSCNKRLYDKVSQ------C 371
Query: 387 PKCKKHFCLECDIYIHESLHNCPGC 411
KCK FCL CD+YIHE L+ CP C
Sbjct: 372 SKCKNIFCLGCDLYIHEDLNQCPFC 396
>gi|68068799|ref|XP_676310.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56495950|emb|CAH97731.1| conserved hypothetical protein [Plasmodium berghei]
Length = 401
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 115/383 (30%), Positives = 199/383 (51%), Gaps = 24/383 (6%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE+ +RSW L E+ +G L+ ++ Y + + + + T ++KG+ R +
Sbjct: 36 WEQDV--ERSWNLLVEN-NGILQHVNQET-----YDEKNKQKYKKSQTCSLRKGIFRNVI 87
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
I+ D+S E DF+P+R+ V+ + VE F++ FF +NP+ +G+V +K+ A + L
Sbjct: 88 ILFDMSSCMKERDFKPNRITVILECVEIFLKNFFFKNPVGHVGVVALKNSSAKLIQQLTS 147
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+ + + +L+ K G G SLQ L++ LL +P YG +E+LI+Y ++ TCD +I
Sbjct: 148 NIDDVLNSLVKEQKEGLQGSPSLQEGLEIAHNLLMDMPLYGTKEILIMYGSIRTCDKKNI 207
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
++ + ++ + + I ++ EM I KH+C+ T G Y + +++ I + A P +
Sbjct: 208 LKYLDLLIKNNMYVNCISIAPEMHILKHICEKTNGIYKICTNKNILINEINQVAETPLWM 267
Query: 269 AEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQL 328
LI + FP + + +CSCH + Y C C + C++P+ C+ICG+ L
Sbjct: 268 HGME-PQLIHICFPVKKKINTQIVCSCHNILNTDT-YICNFCNSYTCKIPSKCKICGIHL 325
Query: 329 VSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPK 388
+S L+ + L F E+ N+ N + C C Q L ++ C K
Sbjct: 326 ISMHDLSHITNSLQASPLFVEIR----NEQNNHTH--CASCNQLLYDKVSQ------CTK 373
Query: 389 CKKHFCLECDIYIHESLHNCPGC 411
CK FCLECD++IHE L+ CP C
Sbjct: 374 CKNIFCLECDVFIHEDLNQCPFC 396
>gi|261190444|ref|XP_002621631.1| RNA polymerase TFIIH complex subunit Ssl1 [Ajellomyces dermatitidis
SLH14081]
gi|239591054|gb|EEQ73635.1| RNA polymerase TFIIH complex subunit Ssl1 [Ajellomyces dermatitidis
SLH14081]
Length = 502
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 121/323 (37%), Positives = 180/323 (55%), Gaps = 34/323 (10%)
Query: 26 GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGL 85
GG E WE S R+WE+L E G + + +R LRD T +Q+G+
Sbjct: 74 GGAE-WEVS----RTWESLVESADGTISATVEGLLEAGKRKRLLRD------TTPLQRGI 122
Query: 86 IRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 145
IR+L +V+DLS A AE D RP+R + + + FV EFF+QNP+SQ+G++ ++DG+A +
Sbjct: 123 IRHLILVLDLSSAMAEKDLRPTRYLLTLRYAQEFVLEFFEQNPISQLGVLGMRDGLAVRI 182
Query: 146 TDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTC 203
+D+ G+P HI A+ + G SLQN L++ +G L + P++G REV I++ AL +
Sbjct: 183 SDMSGNPTDHILAIQSLRPKDPKGMPSLQNTLEMARGALFRTPTHGTREVFIIFGALLSS 242
Query: 204 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGG----SYSVALDESHFKELIM 259
DPGDI +TI KIR S+IGL+A++ IC+ +C T Y VAL+E HF+EL M
Sbjct: 243 DPGDIHKTINTLVADKIRVSIIGLAAQVAICRDICARTNNGDDSGYGVALNEQHFRELFM 302
Query: 260 E--------------HAPPPPAIAEFAIANLIKMGFPQR--AGEGSISICSCHKEVKVGV 303
++ ++L+ MGFP R + + ++C+CH +
Sbjct: 303 NVTTPPATTVAPTPTTTKEETKTSQTTTSSLLMMGFPSRTLSPTTTPTLCACHSKPSR-T 361
Query: 304 GYTCPRCKARVCELPTDCRICGL 326
GY C RC A+VC LPT C GL
Sbjct: 362 GYLCSRCGAKVCTLPTSCPCGGL 384
>gi|82753444|ref|XP_727680.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23483641|gb|EAA19245.1| W43325 comes from this gene., putative [Plasmodium yoelii yoelii]
Length = 401
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 114/384 (29%), Positives = 201/384 (52%), Gaps = 26/384 (6%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE+ +RSW L E+ +G L+ ++ Y + + + T ++KG+ R +
Sbjct: 36 WEQDV--ERSWNLLVEN-NGILQHVNQET-----YEEKNKQKYKKNQTCSLRKGIFRNVI 87
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
I+ D+S + E DF+P+R+ V+ + VE F++ FF +NP+ +G+V +K+ A + L
Sbjct: 88 ILFDMSSSMKERDFKPNRITVILECVEIFLKNFFFKNPVGHVGVVALKNSSAKLIQQLTS 147
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+ + + +L+ K G +G SLQ L++ LL +P YG +E+LI+Y ++ TCD +I
Sbjct: 148 NIDDVLNSLVKEQKEGLNGSPSLQEGLEIAHNLLMDMPLYGTKEILIMYGSIRTCDKKNI 207
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
++ + ++ + + I ++ EM I KH+C+ T G Y + ++ I + A P +
Sbjct: 208 LKYLDLLIKNNMYVNCISIAPEMHILKHICEKTNGIYKICTSKNILINEINQVAETPLWM 267
Query: 269 AEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQL 328
LI + FP + + +CSCH + Y C C + C++P+ C+ICG+ L
Sbjct: 268 HGME-PQLIHICFPVKKKINTQIVCSCHNILNTDT-YICNFCNSYTCKIPSKCKICGIHL 325
Query: 329 VSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRST-CFGCQQSLLSSGNKPGLYVACP 387
+S L+ ++L + +PL + ++ T C C Q L ++ C
Sbjct: 326 ISMHDLSHITNNL-------QASPLFVEIKNEQNYYTHCSSCNQQLYDKVSQ------CT 372
Query: 388 KCKKHFCLECDIYIHESLHNCPGC 411
KCK FCLECD++IHE L+ CP C
Sbjct: 373 KCKNIFCLECDVFIHEDLNQCPFC 396
>gi|323454955|gb|EGB10824.1| hypothetical protein AURANDRAFT_58771 [Aureococcus anophagefferens]
Length = 361
Score = 201 bits (510), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 138/392 (35%), Positives = 187/392 (47%), Gaps = 40/392 (10%)
Query: 28 LEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIR 87
++ WER A + +W AL+ED G R +D +R + + +GLIR
Sbjct: 1 MQRWER--AGEGAWAALEEDAEG--RLVDGGPGSRDGGGKRR---RVGGGAGGLARGLIR 53
Query: 88 YLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTD 147
Y+ +V+D S AA D RPSR+A F+ + F NP S +V +DG A +
Sbjct: 54 YVALVVDGSAAAGSGDLRPSRLAACCAAGAEFLADLFAGNPFSSACVVDARDGAAKLASP 113
Query: 148 LGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDP 205
L G+ +H AL +G+ +G SLQ AL+ L P YG REV++L S+L+T D
Sbjct: 114 LSGAARAHADALAAVGRAAPAGAFSLQRALEAAAAALEAAPDYGFREVVVLSSSLATRDA 173
Query: 206 GDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPP 265
GD+ + +KIRC V+ L+AE ++ + L TGG ++VALD H L+ PP
Sbjct: 174 GDLNAVAARLAAAKIRCHVVNLAAETYVVRKLADATGGEFAVALDAGHLAALLGNRVEPP 233
Query: 266 PAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVG------VGYTCPRCKARVCELPT 319
P A+ A + AGE G + CPRC R ELP
Sbjct: 234 PLAADDA----------RLAGEPPPLPAPALASSAGGAPAWRATTHACPRCATRAAELPA 283
Query: 320 DCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNK 379
C +C L LVS+PHLARSYHHLFP+A F R CF C L
Sbjct: 284 ACAVCDLPLVSAPHLARSYHHLFPVAAFPG---------RVAEDGACFACGGGLAPRAFD 334
Query: 380 PGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
CP C FC +CD +H +LH CPGC
Sbjct: 335 ------CPACGAAFCGDCDEAVHAALHVCPGC 360
>gi|221060951|ref|XP_002262045.1| ssl1-like protein [Plasmodium knowlesi strain H]
gi|193811195|emb|CAQ41923.1| ssl1-like protein, putative [Plasmodium knowlesi strain H]
Length = 401
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/384 (29%), Positives = 194/384 (50%), Gaps = 24/384 (6%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYL 89
WE+ +RSW L E+ +G L+ + F ++ +++ ++KG+ R++
Sbjct: 35 TWEQDV--ERSWNLLVEN-NGVLQHVSQENFEEKSKQKYKKNQ-----VCALRKGIFRHI 86
Query: 90 YIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
I+ D+S + E DF+P R+ VV + VE F+ FF +NP+ +G+V +K+ A + L
Sbjct: 87 IILFDMSSSMKERDFKPDRINVVLECVENFLTNFFFKNPVGHVGVVALKNSSAKLIQPLT 146
Query: 150 GSPESHIKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 207
+ E + AL+ + +G G SL+ L++ LL IP YG +E+LI+Y ++ TCD +
Sbjct: 147 SNMEDIMNALVKERSMGLQGSPSLEQGLEIAHDLLVDIPLYGTKEILIMYGSIRTCDKKN 206
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 267
I+ + ++ + + + +S EM I KH+C++T G Y + + ++ M + P
Sbjct: 207 ILNILNLIVKNNMHVNCVSISPEMHILKHICEETNGVYKICMTKNALMNE-MNNVTETPL 265
Query: 268 IAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQ 327
LI + FP + + +CSCH + Y C C + C++P+ C++CG+
Sbjct: 266 WMIGMEPQLIHICFPIKKKISTQIMCSCHNHLNTDT-YICNFCNSYTCKIPSKCKVCGMH 324
Query: 328 LVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACP 387
L+S L+ ++L F E+ S C C + L ++ C
Sbjct: 325 LISMHDLSHITNNLQGSPLFIEI------KNEKNGPSACVSCNKPLYDKVSQ------CS 372
Query: 388 KCKKHFCLECDIYIHESLHNCPGC 411
KCK FCL CD+YIHE L+ CP C
Sbjct: 373 KCKNIFCLGCDLYIHEDLNQCPFC 396
>gi|66359374|ref|XP_626865.1| transcription factor TFIIH with a vWA domain [Cryptosporidium
parvum Iowa II]
gi|46228124|gb|EAK89023.1| transcription factor TFIIH with a vWA domain [Cryptosporidium
parvum Iowa II]
Length = 423
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 126/426 (29%), Positives = 214/426 (50%), Gaps = 33/426 (7%)
Query: 18 EDEDDNLNGGLEAWERSYADD----RSWEALQEDESGFLRPIDNSAF----YHAQYRRRL 69
E D N L+ E Y+ + ++WE L E ESG + D + F Y L
Sbjct: 5 EKLADTSNNSLDEQEVVYSWEQGLIKNWERLVETESGLVVIDDETRFDSNNADESYNIEL 64
Query: 70 RDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPL 129
R I++GL+R + I++D++ E+D++P R+ + K E F+++ + NPL
Sbjct: 65 LKR---GPNTNIRRGLLRNIVIILDMTSNMLELDYKPDRLQCMVKCNEIFIKQLLEDNPL 121
Query: 130 SQIGLVTVKDGVANCLTDLGGSPESHIKALMGKL--GCSGDSSLQNALDLVQGLLSQIPS 187
+QI ++++ DG+ + + + +++ L GC G S+QN L+ + LL IP
Sbjct: 122 TQISVISIYDGIGEVIISYNSNFLEIMTSILNYLKKGCKGSMSIQNGLEKAKYLLVSIPP 181
Query: 188 YGHREVLILYSALSTCDPGDIM-ETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYS 246
YG +E++ ++ + D + E ++ + I + I E++I K + + TGG
Sbjct: 182 YGTKEIIFFLGSMRSVDNSFLFNEWVEGFSSNNIIINAILFIPELYIIKTITKMTGGVCL 241
Query: 247 VALDESHFKELIMEH--APPPPAIAEFAI-ANLIKMGFPQRAGEGSISI-CSCHKEVKVG 302
A++ H +L +E+ PPP IA + NL+ MGFP+ + CSCH+ +
Sbjct: 242 CAMNNDHLLKLTLENFIKPPPNNIASTPLNINLVTMGFPEYVSNQTHPFGCSCHRSL-TH 300
Query: 303 VGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLND----P 358
GY+CP+CK+ VC LPT C +C + L+S HLA+S+ +LF ++TP+ +
Sbjct: 301 RGYSCPKCKSIVCYLPTKCPVCLIYLISPNHLAKSFAYLF---QHPDITPIKNGEYSKIE 357
Query: 359 RNRSRSTCFGCQQSL-----LSSGNKPGLY--VACPKCKKHFCLECDIYIHESLHNCPGC 411
+ ++ C C+ L+SG++ + C C FC EC +I +LH CP C
Sbjct: 358 SSSIKTKCELCESQFSNNVYLNSGSRSNIINKYLCTNCSTQFCNECCKFIFNTLHQCPIC 417
Query: 412 ESLRHS 417
SLR S
Sbjct: 418 CSLRIS 423
>gi|67595351|ref|XP_665994.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54656889|gb|EAL35767.1| hypothetical protein Chro.30353 [Cryptosporidium hominis]
Length = 423
Score = 198 bits (503), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 130/428 (30%), Positives = 216/428 (50%), Gaps = 37/428 (8%)
Query: 18 EDEDDNLNGGLEAWERSYADD----RSWEALQEDESGFLRPIDNSAFYHAQ-----YRRR 68
E D N L+ E Y+ + ++WE L E ESG L ID+ A + + Y
Sbjct: 5 EKLADTSNNSLDEQEVVYSWEQGLIKNWERLVETESG-LVVIDDEARFDSNNADESYNIE 63
Query: 69 LRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNP 128
L R A I++GL+R + I++D++ E+D++P R+ + K E F+++ + NP
Sbjct: 64 LLKR---APNTNIRRGLLRNIVIILDMTSNMLELDYKPDRLQCMVKCNEIFIKQLLEDNP 120
Query: 129 LSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKL--GCSGDSSLQNALDLVQGLLSQIP 186
L+QI ++++ DG+ + + + +++ L GC G S+QN L+ + LL IP
Sbjct: 121 LTQISVISIYDGIGEVIISYNSNFLEIMTSILNYLKKGCKGSMSIQNGLEKAKYLLVSIP 180
Query: 187 SYGHREVLILYSALSTCDPGDIM-ETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSY 245
YG +E++ ++ + D + E ++ + I + I E++I K + + TGG
Sbjct: 181 PYGTKEIIFFLGSMRSVDNSFLFNEWVEGFSSNNIIINAILFIPELYIIKTITKMTGGVC 240
Query: 246 SVALDESHFKELIMEH--APPPPAIAEFAI-ANLIKMGFPQRAGEGSISI-CSCHKEVKV 301
A++ H +L +E+ PPP IA + NL+ MGFP+ + CSCH +
Sbjct: 241 LCAMNNDHLLKLTLENFIKPPPNNIASTPLNINLVTMGFPEYLNNQTHPFGCSCHGSL-T 299
Query: 302 GVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFP---IAPFD--EVTPLCLN 356
GY+CP+CK+ VC LPT C +C + L+S HLA+S+ +LF I P E + +
Sbjct: 300 HRGYSCPKCKSIVCYLPTKCPVCLIYLISPNHLAKSFAYLFQHPDIIPIKNGEYSKI--- 356
Query: 357 DPRNRSRSTCFGCQQSL-----LSSGNKPGLY--VACPKCKKHFCLECDIYIHESLHNCP 409
+ ++ C C+ L+SG++ + C C FC EC +I +LH CP
Sbjct: 357 -ESSSIKTKCELCESQFSNNVYLNSGSRSNIINKYLCTNCNTQFCNECCKFIFTTLHQCP 415
Query: 410 GCESLRHS 417
C SLR S
Sbjct: 416 ICCSLRIS 423
>gi|156102767|ref|XP_001617076.1| transcription factor [Plasmodium vivax Sal-1]
gi|148805950|gb|EDL47349.1| transcription factor, putative [Plasmodium vivax]
Length = 401
Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 113/386 (29%), Positives = 197/386 (51%), Gaps = 28/386 (7%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYL 89
WE+ +RSW L E+ +G L+ + ++ +++ ++KG+ R++
Sbjct: 35 TWEQDV--ERSWNLLVEN-NGILQHVSQENLEEKGKQKYKKNQ-----VCALRKGIFRHI 86
Query: 90 YIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
I+ D+S + E DF+P R+ VV + VE F+ FF +NP+ +G+V +K+ A + L
Sbjct: 87 IILFDMSSSMKERDFKPDRINVVLECVENFLTHFFFKNPVGHVGVVALKNSSAKLIQPLT 146
Query: 150 GSPESHIKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 207
+ E AL+ + +G G SLQ L++ LL IP YG +E+LI+Y ++ TCD +
Sbjct: 147 SNMEDITNALLKERSMGLQGSPSLQQGLEIAHDLLIDIPLYGTKEILIMYGSIRTCDKKN 206
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 267
I+ + ++ + + + ++ EM I KH+C+ T GSY + + ++ M + P
Sbjct: 207 ILNILNLIVKNNMHVNCVSIAPEMHILKHICEQTNGSYKICMTKNSLMNE-MNNITETPL 265
Query: 268 IAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQ 327
LI + FP + + +CSCH + Y C C + C++P+ C++CG+
Sbjct: 266 WMMGMEPQLIHICFPIKKKISTQIMCSCHNNLNTDT-YICNFCNSYTCKIPSKCKVCGMH 324
Query: 328 LVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSR--STCFGCQQSLLSSGNKPGLYVA 385
L+S L+ ++L + +PL L + +N + S C C + L ++
Sbjct: 325 LISMHDLSHITNNL-------QGSPLFL-EIKNEEKGPSVCVSCNKRLYDKVSQ------ 370
Query: 386 CPKCKKHFCLECDIYIHESLHNCPGC 411
C KC FCL CD+YIHE L+ CP C
Sbjct: 371 CSKCGNLFCLACDLYIHEDLNQCPFC 396
>gi|358371546|dbj|GAA88153.1| RNA polymerase TFIIH complex subunit Ssl1 [Aspergillus kawachii IFO
4308]
Length = 320
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 102/269 (37%), Positives = 160/269 (59%), Gaps = 18/269 (6%)
Query: 26 GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGL 85
GG E WE S R+WE L E G + + +R LRD T +Q+G+
Sbjct: 42 GGAE-WEVS----RTWETLVEGADGTISSTVEGLLEAGKRKRLLRD------TTPLQRGI 90
Query: 86 IRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 145
IR+L ++IDLS++ E D RP+R + + + FVREFF+QNP+SQ+G++ +KDG+A +
Sbjct: 91 IRHLILIIDLSQSMTEKDLRPTRYLLSLRYAQEFVREFFEQNPISQLGVLGLKDGLAVRV 150
Query: 146 TDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTC 203
+D+ G+P HI A+ + G SLQN ++ +G L PS+G RE+ +++ +L +
Sbjct: 151 SDMSGNPTEHISAIQSLRDQDPKGLPSLQNGFEMARGALFHTPSHGTREIFVIFGSLLSS 210
Query: 204 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGG----SYSVALDESHFKELIM 259
DPGDI +TI KIR ++GL+A++ IC+ +C T G +Y VAL+E HF++L+M
Sbjct: 211 DPGDIHQTITTLINDKIRVGIVGLAAQVAICREICGKTNGGDDTTYGVALNEQHFRDLVM 270
Query: 260 EHAPPPPAIAEF-AIANLIKMGFPQRAGE 287
PP ++ + ++L+ MGFP R E
Sbjct: 271 SVTTPPATYSQKQSTSSLLMMGFPSRTVE 299
>gi|90082659|dbj|BAE90511.1| unnamed protein product [Macaca fascicularis]
Length = 237
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 113/238 (47%), Positives = 155/238 (65%), Gaps = 22/238 (9%)
Query: 185 IPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS 244
+P + REVLI++S+L+TCDP +I + I+ K +KIR SVIGLSAE+ +C L ++TGG+
Sbjct: 1 MPGHTSREVLIIFSSLTTCDPSNIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGT 60
Query: 245 YSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRA--------GEGSISICSCH 296
Y V LDESH+KEL+ H PPPA + +LI+MGFPQ + S S+
Sbjct: 61 YHVILDESHYKELLTHHVSPPPASSSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLD 119
Query: 297 KEVKVGV---GYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPL 353
+ G+ GY CP+C+A+ CELP +C+ICGL LVS+PHLARSYHHLFP+ F E+ PL
Sbjct: 120 GNTEPGLTLGGYFCPQCRAKYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-PL 178
Query: 354 CLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
+ N R C+GCQ L +YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 179 ---EEYNGER-FCYGCQGEL----KDQHVYV-CAVCQNVFCVDCDVFVHDSLHCCPGC 227
>gi|344303241|gb|EGW33515.1| hypothetical protein SPAPADRAFT_60859 [Spathaspora passalidarum
NRRL Y-27907]
Length = 346
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 126/351 (35%), Positives = 176/351 (50%), Gaps = 77/351 (21%)
Query: 137 VKDGVANCLTDLGGSPESHIKALM-------GKLGCSGDSSLQNALDLVQGLL------S 183
+++GVAN ++++ GSP+ H+ + K GD SLQN+L++ + LL +
Sbjct: 1 MRNGVANLVSEVSGSPQYHLDKIRQLKARQHNKFEPKGDPSLQNSLEMARSLLKYNFGSN 60
Query: 184 QIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG- 242
+ +E+L+++ AL T DPGDI +TI + I+ VIGLSA++ IC+ L T
Sbjct: 61 ANNTKNSKEILVIFGALFTSDPGDIHKTIGNLVKDDIKVKVIGLSAQVAICQELVNRTNR 120
Query: 243 -------GSYSVALDESHFKELIMEHAPPPPAI---AEFAIAN----LIKMGFP---QRA 285
+Y V ++ESHFKEL+M+ P P EF +N +IKMGFP Q
Sbjct: 121 EEKNTSSKNYGVIMNESHFKELLMDCVTPLPLTEQEKEFEESNHGVPVIKMGFPTKIQPT 180
Query: 286 GEGSISICSCHKE------------------------------VKVGVGYTCPRCKARVC 315
G SI E V VGY CP+CK++VC
Sbjct: 181 GNSSIGNTDFTIEFPQLNASFPTAGSDDSSDVVQINHNMGATTTGVAVGYQCPQCKSKVC 240
Query: 316 ELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL-- 373
LPT C +CGL L+ S HLARSYHHL P+ P+ EV P+ CFGCQ
Sbjct: 241 NLPTICPVCGLMLILSTHLARSYHHLVPLRPYKEV-PIS----STYESQFCFGCQLQFPK 295
Query: 374 ---LSSGNKPGL------YVACPKCKKHFCLECDIYIHESLHNCPGCESLR 415
+S +K L C KC K FC+ CD+++HE LHNCPGCE+ +
Sbjct: 296 GVRTTSKSKGKLESMTSSRYRCMKCSKDFCINCDVFVHEVLHNCPGCENSK 346
>gi|70952334|ref|XP_745342.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56525635|emb|CAH76815.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 400
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 112/385 (29%), Positives = 199/385 (51%), Gaps = 27/385 (7%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYL 89
WE+ +RSW L E+ +G L+ ++ Y + + + T ++KG+ R +
Sbjct: 35 VWEQDV--ERSWNLLVEN-NGILQHVNQET-----YEEKNKQKYKKNQTCSLRKGIFRNV 86
Query: 90 YIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
I+ D+S + E DF+P+R+ V+ + VE F++ FF +NP+ +G+V +K+ A + L
Sbjct: 87 IILFDMSSSMTERDFKPNRITVILECVEIFLKNFFFKNPVGHVGVVALKNSSAKLIQQLT 146
Query: 150 GSPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 207
+ + + +L+ K G G SLQ L++ LL + YG +E+LI+Y ++ TCD +
Sbjct: 147 SNIDDVLNSLVKEQKEGLQGSPSLQEGLEIAHNLLMDML-YGTKEILIMYGSIRTCDKKN 205
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 267
I++ + ++ + + I ++ EM I KH+C+ T G Y + ++ I + A P
Sbjct: 206 ILKYLDLLIKNNMYVNCISIAPEMHILKHICEKTHGIYKICTSKNILINEINQVAETPLW 265
Query: 268 IAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQ 327
+ LI + FP + + +CSCH + Y C C + C++P+ C++CG+
Sbjct: 266 MHGME-PQLIHICFPVKKKINTQIVCSCHNTLNTDT-YICNFCNSYTCKIPSKCKVCGIH 323
Query: 328 LVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRST-CFGCQQSLLSSGNKPGLYVAC 386
L+S L+ ++L + +PL + ++ T C C Q L ++ C
Sbjct: 324 LISMHDLSHITNNL-------QASPLFIEIKNEQNYYTYCSSCNQQLYDKVSQ------C 370
Query: 387 PKCKKHFCLECDIYIHESLHNCPGC 411
KCK FCLECD++IHE L+ CP C
Sbjct: 371 TKCKNIFCLECDVFIHEDLNQCPFC 395
>gi|124513058|ref|XP_001349885.1| TFIIH basal transcription factor subunit [Plasmodium falciparum
3D7]
gi|23615302|emb|CAD52293.1| TFIIH basal transcription factor subunit [Plasmodium falciparum
3D7]
Length = 401
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 118/413 (28%), Positives = 209/413 (50%), Gaps = 26/413 (6%)
Query: 3 NSERKRLNGEAEEEEEDEDDNLN--GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAF 60
NSE K + E + DE++ G WE+ +RSW L E+ +G L+ +
Sbjct: 6 NSENKVIFVEDVVRDFDENEIFEEITGKFTWEQDV--ERSWNLLVEN-NGVLQHVSQENN 62
Query: 61 YHAQYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFV 120
+ + +++ + ++KG+ R++ I+ D+S + E D +P R+ V + VE+F+
Sbjct: 63 ENENKEKYRKNQG-----SSLRKGIFRHIIILFDMSSSMKERDLKPDRINVALECVESFL 117
Query: 121 REFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGK--LGCSGDSSLQNALDLV 178
+ FF +NP+ +G+V +K+ A + + + + +++ + G G SL+ L +
Sbjct: 118 KNFFFKNPVGHVGVVALKNSSAKLIQPFTSNVDDILNSILKERTAGLQGSPSLEEGLQIA 177
Query: 179 QGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLC 238
LL +P YG +EVLI+Y ++ TCD +I+ ++ +S I + I ++ EM I KH+C
Sbjct: 178 HDLLIDMPLYGTKEVLIMYGSIRTCDKKNILNVLELLVKSNIYVNCISIAPEMHILKHIC 237
Query: 239 QDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKE 298
+ + G Y + ++ I +A P + LI + FP + + +CSCH +
Sbjct: 238 EKSNGFYKICSSKNSLMNEINNNAETPLWMQGME-PQLIHICFPTKKKISTQIMCSCHGK 296
Query: 299 VKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDP 358
+ Y C C + C++P+ C++CG+ L+S L+ ++L F E+ N+
Sbjct: 297 LNTDT-YVCNFCNSYTCKIPSKCKVCGIHLISMHDLSHITNNLQGSPLFIEIK----NEQ 351
Query: 359 RNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
N C C Q L + +Y C KC+ FCLECDI+IHE L+ CP C
Sbjct: 352 GN--YKVCSSCNQQLYNK-----IY-QCTKCQHIFCLECDIFIHEELNQCPFC 396
>gi|209880135|ref|XP_002141507.1| suppressor of stem-loop protein 1 [Cryptosporidium muris RN66]
gi|209557113|gb|EEA07158.1| suppressor of stem-loop protein 1, putative [Cryptosporidium muris
RN66]
Length = 424
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 119/412 (28%), Positives = 206/412 (50%), Gaps = 23/412 (5%)
Query: 14 EEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQY---RRRLR 70
+ E ++D L L WE+ +++WE L E SG L +D+S Q+ ++ L
Sbjct: 12 KRNERFDNDTL---LYTWEQGV--NKTWEKLVETSSG-LALLDHS-LQSDQWNITKQELD 64
Query: 71 DRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLS 130
D ++ + ++G +R + I++D+S + E+D++P R+ + + ++ F+ +NPL+
Sbjct: 65 DILKISKSLNTRRGFLRNIVIILDMSSSMLELDYKPDRLQCMVRCIDTFICNLLQENPLT 124
Query: 131 QIGLVTVKDGVANCLTDLGGSPESHIKALM--GKLGCSGDSSLQNALDLVQGLLSQIPSY 188
QI ++++++G+ + +T + + ++ K GCSG S++N L+ + LL+ IP Y
Sbjct: 125 QISVISIRNGLTSIVTTYNSNYREIVSGILSEAKNGCSGVMSIRNGLEKAKQLLASIPPY 184
Query: 189 GHREVLILYSALSTCDPGDIM-ETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSV 247
G +E++ ++ + D ++ E + I + + E+FI K + TGG
Sbjct: 185 GTKEIVFFLGSMRSIDNDSMLNEWLDDFIAHNIVINALLFIPELFIIKTITTKTGGICLC 244
Query: 248 ALDESHFKELIMEHAPPPPAIAEFAI---ANLIKMGFPQRAGEGSISI-CSCHKEVKVGV 303
AL+ H +L++E+ PP+ ++ NL+ MGFP + CSCHK +
Sbjct: 245 ALNSEHMLQLLLENFVKPPSYSQLNTPLHINLVPMGFPMYFNNSGYPLQCSCHKSITSD- 303
Query: 304 GYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSR 363
GY CPRCK+ VC LP C IC L L S+ HL +S+ LF P EV L + ++
Sbjct: 304 GYCCPRCKSLVCYLPIKCPICNLYLASANHLTKSFAFLFK-PPSMEVLQLNPGEYKSDIP 362
Query: 364 STCFGCQQSLLSSGNK----PGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
C CQ S P + C C C++C I +LH CP C
Sbjct: 363 RHCRFCQNLFTSKATYRNGFPFSLIKCTNCCSFLCIDCCKLILLALHQCPEC 414
>gi|242807960|ref|XP_002485064.1| RNA polymerase TFIIH complex subunit Ssl1, putative [Talaromyces
stipitatus ATCC 10500]
gi|218715689|gb|EED15111.1| RNA polymerase TFIIH complex subunit Ssl1, putative [Talaromyces
stipitatus ATCC 10500]
Length = 313
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 97/241 (40%), Positives = 149/241 (61%), Gaps = 16/241 (6%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE S R+WE++ E G + + +R LRD T +Q+G+IR+L
Sbjct: 41 WEVS----RTWESVVEGADGTISSTVEGLLEAGKRKRLLRD------TTPLQRGIIRHLI 90
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+DLS++ AE D RP+R + + + FV EFF+QNP+SQ+G++ ++DG+A ++D+ G
Sbjct: 91 LVLDLSQSMAEKDIRPTRYLLALRYAQEFVIEFFEQNPISQLGVIGMRDGLAVRISDMSG 150
Query: 151 SPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P HI A+ + G SLQNAL++ +G L PS+G REVLI++ +L + DPGDI
Sbjct: 151 NPTDHITAIHALRSDDPKGLPSLQNALEMARGALFHTPSHGTREVLIVFGSLLSSDPGDI 210
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS----YSVALDESHFKELIMEHAPP 264
+T++ KIR ++GL+A++ IC+ LC T G Y VAL+E HF+EL+ME P
Sbjct: 211 HQTLKSLVADKIRVGIVGLAAQVAICRELCAKTNGGDDTVYGVALNEQHFRELMMEVTIP 270
Query: 265 P 265
P
Sbjct: 271 P 271
>gi|239793430|dbj|BAH72833.1| ACYPI003683 [Acyrthosiphon pisum]
Length = 245
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 101/250 (40%), Positives = 154/250 (61%), Gaps = 14/250 (5%)
Query: 170 SLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSA 229
S+QN+L++ ++ +PS+ +E+LI+ S+LS+CDPG+I +I+ K IR S+I L+A
Sbjct: 2 SVQNSLEIALSVMKMLPSHTSKEILIIGSSLSSCDPGEINTSIEMLKTHNIRVSMIHLAA 61
Query: 230 EMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEG- 288
E+ + +HLC +T G ++V +D+ HFK ++ P P + A+ +KMGFPQ +
Sbjct: 62 EVRMFRHLCNETKGKHNVIVDDVHFKHILWSLVEPVP-LPNSVDASCVKMGFPQELEQKP 120
Query: 289 SISICSCH--KEVKVGV-GYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIA 345
+ CSCH + K+ G+ CP+C ++ CELP +C+ CGL LVSS HLARS HHL PI
Sbjct: 121 PFTTCSCHLAEGGKLNAKGFFCPQCNSKYCELPVECKCCGLILVSSLHLARSLHHLVPIK 180
Query: 346 PFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESL 405
PF ++ + S + C+GC++ + +Y C CKKH+C CDIY+H +L
Sbjct: 181 PFIKI------ELEEGSSAYCYGCRKRIKVPAE--NVYF-CESCKKHYCDGCDIYVHNTL 231
Query: 406 HNCPGCESLR 415
H CPGC R
Sbjct: 232 HVCPGCAVKR 241
>gi|300709301|ref|XP_002996816.1| hypothetical protein NCER_100001 [Nosema ceranae BRL01]
gi|239606142|gb|EEQ83145.1| hypothetical protein NCER_100001 [Nosema ceranae BRL01]
Length = 335
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 123/389 (31%), Positives = 199/389 (51%), Gaps = 57/389 (14%)
Query: 26 GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGL 85
GG AWE+ Y R+W L ++ S ++ + F + DR +KG+
Sbjct: 3 GGF-AWEKEYK--RTW--LDDERSDTIKEFKLNKFVY-------NDR---------KKGV 41
Query: 86 IRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 145
+R+L+I+ID+S + + D+ PS V + +E F+ FF +NP+S + TV +
Sbjct: 42 LRHLHILIDISSSIDKNDYLPSIRKNVIRSLEKFIPTFFLENPISGLSFSTVNEKTVK-- 99
Query: 146 TDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGH-REVLILYSALSTCD 204
+ I L+ + G G+ SL N L + QI SY RE+L++ S+L D
Sbjct: 100 ----STNSVEIADLLNQKG-EGNFSLLNGL---YDAIDQIKSYTFCREILVIVSSLVLKD 151
Query: 205 PGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPP 264
P + I ++ I+ ++I L E+ I K++ + TGG + V L+ HF ++
Sbjct: 152 PDSYTDVIDLLRKHNIKVNIISLCGELMIYKNIVESTGGKFFVPLNIDHFNYIL--RCMT 209
Query: 265 PPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRIC 324
P + NLIK+GFP+ E + C+CH +++ VGY CP CK +C LP C IC
Sbjct: 210 VPGELNSSTINLIKLGFPKVIYEEGV--CACHLQLQ-SVGYECPLCKTFICSLPMGCPIC 266
Query: 325 GLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYV 384
LQLVSS ++A+++ H++P+APF + C N CF C N PG +
Sbjct: 267 ELQLVSSLNIAKAFQHMYPLAPFTK----CCN-------GVCFVC--------NSPGNF- 306
Query: 385 ACPKCKKHFCLECDIYIHESLHNCPGCES 413
+C KC +C CD+++H +L+ C GC++
Sbjct: 307 SCEKCNSVYCDSCDLFVHNNLNFCLGCKN 335
>gi|348569006|ref|XP_003470289.1| PREDICTED: hypothetical protein LOC100720431 [Cavia porcellus]
Length = 637
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 119/312 (38%), Positives = 170/312 (54%), Gaps = 49/312 (15%)
Query: 113 AKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGK--LGCSGDSS 170
A+ +E FV E+FDQNP+SQ+ ++ K A LT+L G P+ HI +L + C G+ S
Sbjct: 352 AQLLEYFVEEYFDQNPISQVCIIVTKSKRAEKLTELSGMPQKHITSLKKAIDMTCHGEPS 411
Query: 171 LQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAE 230
L N+L + L+ D+M+T+ K +KIR SVIGL AE
Sbjct: 412 LYNSLSMAMQTLNL----------------------DLMKTL---KTAKIRVSVIGLWAE 446
Query: 231 MFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRA----- 285
+ +C L ++TGG+Y LDESH+KEL+ H PP + + +LI MGFPQ
Sbjct: 447 VRVCAALARETGGTYHEILDESHYKELLTHHVSPP-PASSSSECSLIHMGFPQHTIAALA 505
Query: 286 ---GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYH 339
+ S S+ + G+ GY P+C A+ CELP +C+ICGL LVS+PHL SYH
Sbjct: 506 DQDAKPSFSMAHLDSSSEPGLALGGYFYPQCWAKYCELPVECKICGLTLVSAPHLVWSYH 565
Query: 340 HLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDI 399
HLFP+ F E+ PL + C+GCQ L +YV C + FC++CD+
Sbjct: 566 HLFPLDAFQEI-PL----EEYKGERFCYGCQGQL----KDQHVYV-CTVFQNVFCVDCDV 615
Query: 400 YIHESLHNCPGC 411
++H+S+H C GC
Sbjct: 616 FVHDSVHCCLGC 627
>gi|322801575|gb|EFZ22231.1| hypothetical protein SINV_15041 [Solenopsis invicta]
Length = 202
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/199 (47%), Positives = 124/199 (62%), Gaps = 22/199 (11%)
Query: 224 VIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQ 283
VIGL+AE++ICK + TGG +SVALD+ H+KE + H PPPA A L+KMGFP
Sbjct: 1 VIGLAAELYICKRMANLTGGEHSVALDDKHYKEQLNAHIDPPPAATRLDAA-LVKMGFPH 59
Query: 284 RA-----GEGSISICSCHKE-----VKV-GVGYTCPRCKARVCELPTDCRICGLQLVSSP 332
A + S+++C CH + VK+ GY CP+C ++ CELP +CR CGL LVS+P
Sbjct: 60 HALHSSAPDTSMTVCMCHAQNSDEPVKLMTTGYLCPQCLSKHCELPVECRACGLTLVSAP 119
Query: 333 HLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKH 392
HLARSYH+LFP+ PF E+ S CFGCQ++L K C KC +
Sbjct: 120 HLARSYHYLFPVDPFKEIA-------SESDHSFCFGCQKALAQKDKK---VYTCGKCNQT 169
Query: 393 FCLECDIYIHESLHNCPGC 411
FCL+C+I+IHE LH CPGC
Sbjct: 170 FCLDCEIFIHEILHTCPGC 188
>gi|313239111|emb|CBY14088.1| unnamed protein product [Oikopleura dioica]
Length = 369
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 129/409 (31%), Positives = 193/409 (47%), Gaps = 58/409 (14%)
Query: 19 DEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATT 78
DE + + G WE Y +R+WEAL+ED++G L ++A +RL + +A
Sbjct: 2 DEGGDKHSGYR-WEGGY--ERTWEALREDDTGALISGSSAA-------KRLFAKKRLAQE 51
Query: 79 ARIQKGLIRYLYIVIDLSRAAAEMDFR----PSRMAVVAKQVEAFVREFFDQNPLSQIGL 134
A + ++R+ + +DLSR+ A+ D R P+R + ++ FV +FF PL Q+ L
Sbjct: 52 AGQRIHIVRHCVLALDLSRSMADPDLRIDRYPNRAGCAVRSLKEFVPKFFASCPLGQLAL 111
Query: 135 VTVKDGVANCLTDLGGSPESHIKAL----MGKLGCSGDSSLQNALDLVQGLLSQIPSYGH 190
V +++ AN + LGGS +KAL + G S+ N + + +L+ + + +
Sbjct: 112 VILQNKRANIVVPLGGSEARLLKALNDIEVKGFKTGGQCSMVNGIAASKSMLNAVGEHSN 171
Query: 191 REVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALD 250
RE++ + +L+T D TI+ IRCSV+ LSAE+ I K L + T G Y V LD
Sbjct: 172 REIIFVVGSLNTIDVTSPFATIETVANEGIRCSVVSLSAEVNIWKKLAERTDGKYFVPLD 231
Query: 251 ESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRC 310
+ +E PP + L+KMGFPQ
Sbjct: 232 PIDVSDK-LEELSRPPVESSSRQGVLVKMGFPQ--------------------------- 263
Query: 311 KARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTP--------LCLNDPRNRS 362
V +PT C +C L LVS+ HLAR YHHLFP + P L L +
Sbjct: 264 ---VKAIPTLCDVCKLSLVSAAHLARCYHHLFPPSSVTPSIPEQSGEEIDLELERSQFEK 320
Query: 363 RSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
C GC + +S + +V C KC C ECD +I E LH+CPGC
Sbjct: 321 IGPCVGCNYAPISV-EEGRQFVVCDKCLNSLCGECDGFIDEHLHSCPGC 368
>gi|119182598|ref|XP_001242425.1| hypothetical protein CIMG_06321 [Coccidioides immitis RS]
Length = 364
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 96/233 (41%), Positives = 145/233 (62%), Gaps = 15/233 (6%)
Query: 39 RSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRA 98
R+WE+L E G I ++ + +R RD T +Q+G+IR+L +V+DLS A
Sbjct: 68 RTWESLVEGADG---TISSTVEGLLEAGKRKRD------TTPLQRGIIRHLILVLDLSIA 118
Query: 99 AAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKA 158
+E D RP+R + + + FV E+F+QNP+SQ+G++ ++DG+A ++D+ G+P HI A
Sbjct: 119 MSEKDVRPTRYLLTLRYAQEFVLEYFEQNPISQLGIIGMRDGLAVRISDMSGNPSEHILA 178
Query: 159 L--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCK 216
+ + +G SLQNAL++ +G L PS+G REVLI++ AL + DPGDI +TI
Sbjct: 179 IQALRTRDPTGLPSLQNALEMARGALFHTPSHGTREVLIIFGALLSSDPGDIHKTITSLV 238
Query: 217 ESKIRCSVIGLSAEMFICKHLCQDTGG----SYSVALDESHFKELIMEHAPPP 265
KIR V+GL+AE+ IC+ +C T Y VAL+E HF+EL+ME PP
Sbjct: 239 TDKIRVGVVGLAAEVAICREICSKTNAGDDSGYGVALNEQHFRELMMEITTPP 291
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 386 CPKCKKHFCLECDIYIHESLHNCPGCES 413
C C HFC++CD++ HE +HNCPGC+S
Sbjct: 309 CTVCHNHFCIDCDVFAHEIVHNCPGCQS 336
>gi|348557313|ref|XP_003464464.1| PREDICTED: general transcription factor IIH subunit 2-like [Cavia
porcellus]
Length = 302
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 120/318 (37%), Positives = 171/318 (53%), Gaps = 55/318 (17%)
Query: 116 VEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQN 173
+E FV E+FDQN +SQIG++ K A LT+L G+P HI +L + C G+ SL N
Sbjct: 23 LEYFVEEYFDQNSISQIGIIVTKR--AEKLTELSGNPRKHITSLKKATDMTCHGEPSLYN 80
Query: 174 ALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFI 233
+L + A+ T + D+M+T++ K VIG+SAE+ +
Sbjct: 81 SLSM---------------------AMQTLNFLDLMKTLKTAKMC-----VIGMSAEVRV 114
Query: 234 CKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRA-------- 285
C L ++TG +Y LDESH+KEL+ H PPPA + +LI MGFPQ
Sbjct: 115 CTGLARETGSTYHEILDESHYKELLTHHVSPPPASSSSE-CSLIHMGFPQHTIAALADQD 173
Query: 286 GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLF 342
+ S S+ + G+ GY P+C A+ CELP +C++CGL LVS+PHLA YHHLF
Sbjct: 174 AKPSFSMAHLDSSSEPGLALGGYFYPQCWAKYCELPVECKMCGLTLVSAPHLAWLYHHLF 233
Query: 343 PIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIH 402
P+ F E+ PL + C+GCQ L +YV C + FC++CD+++H
Sbjct: 234 PLDAFQEI-PL----EEYKGERFCYGCQGQL----KDQHVYV-CIVFQNVFCVDCDVFVH 283
Query: 403 ESLHNCPGCESLRHSNPI 420
+S+H CPGC H PI
Sbjct: 284 DSVHCCPGC---IHKIPI 298
>gi|403222976|dbj|BAM41107.1| uncharacterized protein TOT_030000370 [Theileria orientalis strain
Shintoku]
Length = 468
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 121/423 (28%), Positives = 209/423 (49%), Gaps = 40/423 (9%)
Query: 18 EDEDDNLNGGLEAWERSYADDRSWEAL--QEDESGFLRPIDNSAFYHAQYRRRLRDRSLV 75
++E+D+ AWE+ + D+SWE L ++ E F++P + + + SL
Sbjct: 55 KNENDDEAYQQYAWEQDF--DKSWEQLVDKDGELQFIKP-QSRIYSEPEGENEHPSESLD 111
Query: 76 ATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLV 135
+ R G+IR + I+ D+S E DF+P R+ ++ FV++ F + P++Q+G+V
Sbjct: 112 VISKR---GIIRNVVILFDMSETMLEKDFKPDRLYCSFGALKEFVKDLFSKGPITQLGMV 168
Query: 136 TVKDGVANCLTDLGGSPESHIKALMGKL--GCSGDSSLQNALDLVQGLLSQIPSYGHREV 193
+++ VAN + LG +PE ++ L L G G SSLQN L++ +L ++PSY REV
Sbjct: 169 VMRNKVANLICQLGTNPEEQLELLGNSLKEGADGPSSLQNGLEMCLNMLYELPSYSTREV 228
Query: 194 LILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAE----MFICKHLCQDTGGSYSVAL 249
L+++ + T D G+I+ T++K K++ + + I LS E +F K + + +
Sbjct: 229 LVIFGSNRTLDAGNILVTLEKLKQNNLTINSISLSPENRRQLFGGKGCKSPETPTQQLHI 288
Query: 250 DESHFKELIMEHAPPPPAIAEFAIAN---------LIKMGFPQRAGEGSISICSCHKEVK 300
+ + + P +I + + L+K+ FP ++S+C CH +
Sbjct: 289 TSTMVSTMSDQIYMLPVSIVWNKLISLRKKWMEPVLLKVAFPPLKKTATVSLCVCHSSL- 347
Query: 301 VGVGYTCPRCKARVCELPTDCRICGLQLV-----SSPHLARS--YHHLFPIAPFDEVTPL 353
V Y CP+C ++ C +PT C++ L+ ++ H S YHH F +T
Sbjct: 348 VNKAYICPQCHSKSCYIPTKCKVRTFILIGAIDHNNRHAVESTWYHHQIFQGLF--ITSY 405
Query: 354 CLNDPRNRSRSTCFGCQQSLLSSGN-KPGLYVACPKCKKHFCLECDIYIHESLHNCPGCE 412
P+N S+ + Q SS N + + CP C FC C++YI E LH CP C
Sbjct: 406 L---PKNSSK---YENTQVTCSSCNLRNNVGFRCPSCDSWFCEYCNVYIQEELHQCPMCL 459
Query: 413 SLR 415
L+
Sbjct: 460 FLK 462
>gi|365759512|gb|EHN01295.1| Ssl1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 303
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 102/264 (38%), Positives = 158/264 (59%), Gaps = 17/264 (6%)
Query: 2 TNSERKRLNGEAEEEEEDEDDNLNG--GLEAWERSYADDRSWEALQEDESGFLRPIDNSA 59
+ +R R +G+ ++++ + NL G G AWE RSW+ ++ D+ G D ++
Sbjct: 47 SQGDRDR-HGQRKKKKRLSNRNLQGSNGGYAWEDEIK--RSWDLVKVDDEG-----DMAS 98
Query: 60 FYHAQYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAF 119
+ R + R+ Q+G+IR L + +D S A E D RPSR A++ + F
Sbjct: 99 LVASIVEAR-KKRTAKKNITPYQRGIIRSLILTLDCSEAMLEKDLRPSRHAMIIQYAIDF 157
Query: 120 VREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDL 177
V EFFDQNP+SQ+G++ +++G+A ++ + G+P+ HI AL + K G+ SLQNAL++
Sbjct: 158 VHEFFDQNPISQMGIIIMRNGLAQLVSQVSGNPQDHIDALKSIRKQEPKGNPSLQNALEM 217
Query: 178 VQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHL 237
+GLL +P++ REVLI++ +LST DPGDI +TI KIR V+GLSA++ ICK L
Sbjct: 218 ARGLLLPVPAHCTREVLIVFGSLSTTDPGDIHQTIDSLVSEKIRVKVLGLSAQVAICKEL 277
Query: 238 CQDTG----GSYSVALDESHFKEL 257
C+ T Y + LDE+H KEL
Sbjct: 278 CKATNYGDESFYKILLDETHLKEL 301
>gi|323347610|gb|EGA81877.1| Ssl1p [Saccharomyces cerevisiae Lalvin QA23]
Length = 302
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 145/239 (60%), Gaps = 15/239 (6%)
Query: 25 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKG 84
NGG AWE RSW+ ++ D+ G D ++ + R + R+ Q+G
Sbjct: 71 NGGY-AWEDEIK--RSWDLVKVDDEG-----DMASLVASIVEAR-KKRTAKKNITPYQRG 121
Query: 85 LIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 144
+IR L + +D S A E D RP+R A++ + FV EFFDQNP+SQ+G++ +++G+A
Sbjct: 122 IIRSLILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQL 181
Query: 145 LTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALST 202
++ + G+P+ HI AL + K G+ SLQNAL++ +GLL +P++ REVLI++ +LST
Sbjct: 182 VSQVSGNPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVFGSLST 241
Query: 203 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKEL 257
DPGDI +TI KIR V+GLSA++ ICK LC+ T Y + LDE+H KEL
Sbjct: 242 TDPGDIHQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHLKEL 300
>gi|225554656|gb|EEH02952.1| transcription factor TFIIH complex subunit Ssl1 [Ajellomyces
capsulatus G186AR]
Length = 467
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 110/274 (40%), Positives = 149/274 (54%), Gaps = 47/274 (17%)
Query: 183 SQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG 242
S P++G REVLI++ AL + DPGDI +TI KIR S+IGL+A++ IC+ LC T
Sbjct: 178 SHTPTHGTREVLIIFGALLSSDPGDIHQTITALVADKIRISIIGLAAQVAICRDLCARTN 237
Query: 243 GS----YSVALDESHFKELIME-HAPPPPAIAEFAI------------------ANLIKM 279
Y VAL+E HF+EL M+ APP +A + ++L+ M
Sbjct: 238 NGDDTVYGVALNEQHFRELFMDVTAPPVTTVAPTSTPTASSANGPKTTTTNTTASSLLMM 297
Query: 280 GFPQRAGEGSISI--CSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARS 337
GFP + + C+CH + GY C RC A+VC LP+ C CGL L+ S HLARS
Sbjct: 298 GFPSLTLTTTPTPSLCACHSKPSRA-GYLCCRCNAKVCTLPSSCPCCGLTLILSTHLARS 356
Query: 338 YHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC-----QQSLLSSGNKP---------GLY 383
YHHLFP+ + EV+ R RS S CF C + L SG G+
Sbjct: 357 YHHLFPLMNWVEVS--WRRAARKRSAS-CFACGVGFPRMPKLVSGEPEETAKAAVGVGVS 413
Query: 384 VA----CPKCKKHFCLECDIYIHESLHNCPGCES 413
V+ CP C+ HFC++CD++ HE +HNCPGC+S
Sbjct: 414 VSGRYECPVCECHFCIDCDVFAHEVVHNCPGCQS 447
>gi|76157401|gb|AAX28337.2| SJCHGC09266 protein [Schistosoma japonicum]
Length = 234
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 140/223 (62%), Gaps = 9/223 (4%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFY--HAQYRRRLRDRSLVATTARIQKGLIRY 88
WE Y +++W A++EDESG L + H Q R++ R R V +T ++ G++R+
Sbjct: 17 WESGY--EKTWNAIREDESGRLVTTLEQLIHDAHTQIRKK-RKRIGVGSTGFVRLGMMRH 73
Query: 89 LYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL 148
L+++IDLS+A E D +P+R+ K FVRE+FDQNP+SQ+G++ D A LT+L
Sbjct: 74 LFLIIDLSQAMNEQDLKPNRLICTIKAACTFVREYFDQNPISQLGIIVTSDRRAERLTEL 133
Query: 149 GGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPG 206
G+P H+ AL + C+G+ SLQNAL L + L + H E+++L ++L+TCDPG
Sbjct: 134 SGNPRPHLAALQSLYSRTCAGEPSLQNALLLAESRLKY--TIHHNEIVVLIASLTTCDPG 191
Query: 207 DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVAL 249
DI +TI+ ++I CSVI L+ E+F+ + L Q T G++ V +
Sbjct: 192 DIHQTIKSLSSNRIHCSVISLAVEVFVYRALAQFTQGTFHVIM 234
>gi|396081175|gb|AFN82793.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit SSL1 [Encephalitozoon
romaleae SJ-2008]
Length = 340
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 115/365 (31%), Positives = 186/365 (50%), Gaps = 48/365 (13%)
Query: 61 YHAQYRRRLRDRS--------LVATT--ARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMA 110
+ +Y+R DRS + A T + +KG++R+L+++ID+S A + DF P+
Sbjct: 7 WEQEYKRTWEDRSDKKVHEFNMEAETFYSNNRKGIVRHLHVIIDVSEAIDKSDFLPTFRT 66
Query: 111 VVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSS 170
VA+ +E F+ F+++NPLS + ++ +D ++ + + + A +G+ G S S
Sbjct: 67 NVARILEEFIPSFYNENPLSTLSFLSTRDVCVKYISSM----DMDVHAFLGQTG-SKWFS 121
Query: 171 LQNALDLVQGLLSQIPSYGH-REVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSA 229
L N L +G + + + H +E+L++ ++ ST DP E + K K I+ I L
Sbjct: 122 LLNGL---EGSIEIMRNTMHVKEILVIVASTSTRDPHGYTEVLNKLKTYNIKVHFISLCG 178
Query: 230 EMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEF--AIANLIKMGFPQRAGE 287
E+ + K + + TGG + V +D H ++ E + P +F +L+K+GFP E
Sbjct: 179 ELTLYKSISKATGGRFYVPVDVGHLSMIMKELSHP----TDFNGTTLSLVKIGFPLPTIE 234
Query: 288 GSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPF 347
S+ CSCH E+K +GY CP CK VC LPT C ICG QLVS+ +L++S L+P+ PF
Sbjct: 235 SSV--CSCHLEMK-SIGYECPVCKTMVCSLPTSCPICGTQLVSTLNLSKSLRFLYPLKPF 291
Query: 348 DEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHN 407
E ++ C C+ G Y C CK FC C+ H +L
Sbjct: 292 IE-----------KAEGICRICRDK--------GAY-QCELCKSTFCSYCNGLAHNTLSF 331
Query: 408 CPGCE 412
C CE
Sbjct: 332 CIYCE 336
>gi|189240734|ref|XP_967768.2| PREDICTED: similar to btf [Tribolium castaneum]
Length = 236
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/177 (45%), Positives = 122/177 (68%), Gaps = 4/177 (2%)
Query: 116 VEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQN 173
+E F+ EFFDQNP+SQ+G++ + + A ++DL G+ HIKA+ + + G+ SLQN
Sbjct: 52 LENFIEEFFDQNPISQLGIIIMHNKRAEKISDLAGNARKHIKAVQNLKQTSLVGEPSLQN 111
Query: 174 ALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFI 233
++++ L +PS+ RE+L++ +L+TCDPGDI TIQ K +RCSVIGL+AE+++
Sbjct: 112 SIEMALRALKLLPSHASREILVIMGSLTTCDPGDITTTIQMLKTEGVRCSVIGLAAEVYV 171
Query: 234 CKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFP-QRAGEGS 289
C+ L TGG Y+V LD+ HFK+L+ + PPPA A+ +NLIKMGFP Q + EG+
Sbjct: 172 CRQLANQTGGLYNVILDDCHFKDLLYQQVDPPPA-AQTLESNLIKMGFPHQMSVEGT 227
>gi|401825920|ref|XP_003887054.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit SSL1 [Encephalitozoon hellem
ATCC 50504]
gi|392998212|gb|AFM98073.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit SSL1 [Encephalitozoon hellem
ATCC 50504]
Length = 340
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 114/386 (29%), Positives = 189/386 (48%), Gaps = 58/386 (15%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYL 89
+WE+ Y R+WE + + ++ FY +KG++R+L
Sbjct: 6 SWEQEYK--RTWEDRNDRKVNEFN-METETFYSNN-----------------RKGIVRHL 45
Query: 90 YIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
++++D+S A + DF P+ VA+ +E F+ F+++NPLS + ++ +D ++ +
Sbjct: 46 HVIVDVSEAIDKSDFLPTFRTNVARILEDFIPSFYNENPLSTLSFLSTRDVCVKYISSM- 104
Query: 150 GSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGH-REVLILYSALSTCDPGDI 208
+ I A +G+ G S SL N L +G + + + H +E+L++ ++ ST DP
Sbjct: 105 ---DMDIHAFLGQTG-SKWFSLLNGL---EGSIEIMENTMHVKEILVIVASTSTRDPHGY 157
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 268
E + + K I+ I L E+ + K + + TGG + V +D H ++ E + P
Sbjct: 158 TEVLNRLKTHNIKVHFISLCGEVTLYKSISKATGGRFYVPIDVGHLSMIMKELSHP---- 213
Query: 269 AEF--AIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGL 326
+F +L+K+GFP E S+ C+CH EVK VGY CP CK VC LP C IC
Sbjct: 214 TDFNGTTLSLVKIGFPLPTMESSV--CACHLEVK-SVGYECPVCKTMVCSLPISCPICNT 270
Query: 327 QLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVAC 386
QLVS+ +L++S ++P+ PF E R+ C CQ G Y C
Sbjct: 271 QLVSTLNLSKSLRFIYPLKPFIE-----------RAEDACRICQNK--------GAY-QC 310
Query: 387 PKCKKHFCLECDIYIHESLHNCPGCE 412
CK +C C+ ++H +L C CE
Sbjct: 311 DLCKSTYCSYCNGFVHSTLSFCIYCE 336
>gi|270012914|gb|EFA09362.1| hypothetical protein TcasGA2_TC001923 [Tribolium castaneum]
Length = 191
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/177 (45%), Positives = 122/177 (68%), Gaps = 4/177 (2%)
Query: 116 VEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQN 173
+E F+ EFFDQNP+SQ+G++ + + A ++DL G+ HIKA+ + + G+ SLQN
Sbjct: 7 LENFIEEFFDQNPISQLGIIIMHNKRAEKISDLAGNARKHIKAVQNLKQTSLVGEPSLQN 66
Query: 174 ALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFI 233
++++ L +PS+ RE+L++ +L+TCDPGDI TIQ K +RCSVIGL+AE+++
Sbjct: 67 SIEMALRALKLLPSHASREILVIMGSLTTCDPGDITTTIQMLKTEGVRCSVIGLAAEVYV 126
Query: 234 CKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFP-QRAGEGS 289
C+ L TGG Y+V LD+ HFK+L+ + PPPA A+ +NLIKMGFP Q + EG+
Sbjct: 127 CRQLANQTGGLYNVILDDCHFKDLLYQQVDPPPA-AQTLESNLIKMGFPHQMSVEGT 182
>gi|19074105|ref|NP_584711.1| similarity to SUPPRESSOR OF STEM LOOP PROTEIN 1 [Encephalitozoon
cuniculi GB-M1]
gi|19068747|emb|CAD25215.1| similarity to SUPPRESSOR OF STEM LOOP PROTEIN 1 [Encephalitozoon
cuniculi GB-M1]
gi|449328973|gb|AGE95248.1| suppressor of stem loop protein 1 [Encephalitozoon cuniculi]
Length = 340
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 117/365 (32%), Positives = 181/365 (49%), Gaps = 48/365 (13%)
Query: 61 YHAQYRRRLRDRS----------LVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMA 110
+ +Y+R DR+ A + +KG++R+L+I+ID+S A + DF P+ A
Sbjct: 7 WEQEYKRTWEDRNDRKVNEFNLETEAPYSNNRKGIVRHLHIIIDVSEAIDKSDFLPTFRA 66
Query: 111 VVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSS 170
V K +E F+ F+ +NPLS + ++++D S + I A +G+ G S S
Sbjct: 67 NVTKVLEGFIPSFYSENPLSTLSFLSIRD----VCVKYTSSMDIDIHAFLGQTG-SKWFS 121
Query: 171 LQNALDLVQGLLSQIPSYGH-REVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSA 229
L N L +G + + + H +E+L++ ++ ST DP E + K + I+ I L
Sbjct: 122 LLNGL---EGSIEVMKNTMHVKEILVIVASTSTRDPHGYAEVLAKLRAYNIKVHFISLCG 178
Query: 230 EMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEF--AIANLIKMGFPQRAGE 287
E+ + K + + T G + V +D H ++ E + P +F +L+K+GFP E
Sbjct: 179 EITLYKSISKATEGRFYVPVDAGHLSAIMRELSHP----TDFNGTKLSLVKIGFPSPMME 234
Query: 288 GSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPF 347
S+ C+CH EVK G GY CP CK VC LP C IC QLVS+ +L++S L+P+ PF
Sbjct: 235 PSV--CACHLEVK-GAGYECPVCKTMVCSLPISCPICSTQLVSTLNLSKSLRFLYPLRPF 291
Query: 348 DEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHN 407
E ++ TC CQ G Y C CK FC C+ IH +L
Sbjct: 292 VE-----------KAEGTCRVCQGK--------GAY-QCELCKSTFCSYCNRLIHNTLSF 331
Query: 408 CPGCE 412
C CE
Sbjct: 332 CIYCE 336
>gi|428176074|gb|EKX44960.1| SSL1 transcription factor & nucleotide excision repair [Guillardia
theta CCMP2712]
Length = 289
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 105/317 (33%), Positives = 162/317 (51%), Gaps = 42/317 (13%)
Query: 101 EMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALM 160
+ D RP+R+ VV + V +F+ FFDQNP+SQ+ LV ++ G A LT+L G+ H L
Sbjct: 3 QRDMRPTRLGVVQQVVGSFLDNFFDQNPISQVSLVELRGGKAEKLTELSGNSRHHKNKLE 62
Query: 161 GKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKI 220
+L + + + SY R ++ PG + + K + +
Sbjct: 63 ERLAAHRSAGAGMPSMRAGVVWDKRSSYDVRIFELM-------RPGGHLSDY-RLKSAGV 114
Query: 221 RCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA----IAEFAIANL 276
+ +++G++AE+++ + + + TGGSYSVA ++++++H P P + A
Sbjct: 115 KVNIVGMAAELYVARAVSKRTGGSYSVATHAVQVRDMVLKHTSPSPVEEGEGGKEKPAAG 174
Query: 277 IKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLAR 336
+ +GFP+++ G++ G+ CPRC V E+P DC +CGL+L+SS HLAR
Sbjct: 175 MWVGFPRKS-YGALG------------GWQCPRCMDVVKEIPADCGLCGLKLLSSSHLAR 221
Query: 337 SYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKH-FCL 395
SYHHLFP+ F E+ + S STC GC V K KH FC
Sbjct: 222 SYHHLFPVQSFHELED---EEGPATSTSTCGGCG-------------VLLGKESKHVFCG 265
Query: 396 ECDIYIHESLHNCPGCE 412
CD +IHE LH CPGCE
Sbjct: 266 LCDGFIHEMLHVCPGCE 282
>gi|367054704|ref|XP_003657730.1| hypothetical protein THITE_2123698 [Thielavia terrestris NRRL 8126]
gi|347004996|gb|AEO71394.1| hypothetical protein THITE_2123698 [Thielavia terrestris NRRL 8126]
Length = 282
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/212 (43%), Positives = 131/212 (61%), Gaps = 16/212 (7%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRL-RDRSLVATTARIQKGLIRY 88
AWE RSWE + E E G I A A+ RRRL RD T +Q+G+IR+
Sbjct: 59 AWEDI---KRSWENVVEAEDG---SITIEALLEAEKRRRLMRD------TTPLQRGIIRH 106
Query: 89 LYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL 148
L +V+D+S A AE D P+R + FVRE+F+QNP+SQ+G++ ++DGVA ++D+
Sbjct: 107 LMLVLDMSFAMAEKDLLPTRYLLTLNYAVDFVREYFEQNPISQMGIIAMRDGVAVRISDM 166
Query: 149 GGSPESHIKAL---MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDP 205
GG+P HI+ L + G+ SLQNAL++ +G L PS+G REVLI+Y AL + DP
Sbjct: 167 GGNPAEHIEKLRTWAAQGEPQGNPSLQNALEMCRGALFHTPSHGTREVLIIYGALLSSDP 226
Query: 206 GDIMETIQKCKESKIRCSVIGLSAEMFICKHL 237
GDI +TI +IR S++GLSA++ IC L
Sbjct: 227 GDIHDTIANLITDRIRVSIVGLSAQVAICAEL 258
>gi|303388880|ref|XP_003072673.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit SSL1 [Encephalitozoon
intestinalis ATCC 50506]
gi|303301815|gb|ADM11313.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit SSL1 [Encephalitozoon
intestinalis ATCC 50506]
Length = 340
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 115/367 (31%), Positives = 181/367 (49%), Gaps = 52/367 (14%)
Query: 61 YHAQYRRRLRDRS------------LVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSR 108
+ +Y+R DRS + + R KG++R+L+++ID+S A + DF P+
Sbjct: 7 WEQEYKRTWEDRSDRKVNEFNTETGIFYSNNR--KGIVRHLHVIIDVSEAIDKSDFLPTF 64
Query: 109 MAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGD 168
VAK +E F+ F+ +NPLS + ++V+D ++ + + I A +G+ G S
Sbjct: 65 RTNVAKILEGFIPSFYSENPLSTLSFLSVRDVCVKYISSM----DMDIHAFLGQTG-SKW 119
Query: 169 SSLQNALDLVQGLLSQIPSYGH-REVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGL 227
SL N L +G + I + H +E+L++ ++ ST DP E + K K I+ I L
Sbjct: 120 FSLLNGL---EGSVEIIKNTTHVKEILVIVASTSTRDPHGYTEVLTKLKVHNIKVHFISL 176
Query: 228 SAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEF--AIANLIKMGFPQRA 285
E+ + K + + T G + V +D H ++ E + P +F +L+K+GFP
Sbjct: 177 CGEVTLYKSISKATEGRFYVPVDVGHLSIIMKELSHP----TDFNGTTLSLVKIGFPLPV 232
Query: 286 GEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIA 345
E S+ C+CH E+K GY CP CK VC LP C IC QLVS+ +L++S L+P+
Sbjct: 233 IEPSV--CACHLEMK-SAGYECPVCKTMVCSLPVSCPICNTQLVSTLNLSKSLRFLYPLK 289
Query: 346 PFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESL 405
PF E + C CQ G Y C CK FC C+ ++H +L
Sbjct: 290 PFIE-----------KEGKMCRICQSK--------GGY-QCELCKSIFCNSCNGFVHNTL 329
Query: 406 HNCPGCE 412
C CE
Sbjct: 330 SFCIYCE 336
>gi|326935424|ref|XP_003213771.1| PREDICTED: general transcription factor IIH subunit 2-like, partial
[Meleagris gallopavo]
Length = 208
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 83/188 (44%), Positives = 121/188 (64%), Gaps = 7/188 (3%)
Query: 79 ARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQ--IGLVT 136
+++ G++R+LY+V+D SR + D +P+R+ K +E FV E+FDQNP+SQ G V
Sbjct: 6 GQVRLGMMRHLYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQDPPGHVA 65
Query: 137 VKDGVANCLTDLGGSPESHIKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVL 194
+ + G+P+ HI AL + C G+ SL N+L+L L +P + REVL
Sbjct: 66 ATEERR---ARMPGNPKKHIAALKKAVDMNCQGEPSLYNSLNLAMQTLKHMPGHTSREVL 122
Query: 195 ILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHF 254
I++S+L+TCDP +I E I+ K KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+
Sbjct: 123 IVFSSLTTCDPANIYELIKCLKAVKIRVSVIGLSAEVRVCTVLTRETGGTYHVILDESHY 182
Query: 255 KELIMEHA 262
KEL+M H
Sbjct: 183 KELLMHHV 190
>gi|425774738|gb|EKV13039.1| RNA polymerase TFIIH complex subunit Ssl1, putative [Penicillium
digitatum PHI26]
gi|425780731|gb|EKV18732.1| RNA polymerase TFIIH complex subunit Ssl1, putative [Penicillium
digitatum Pd1]
Length = 296
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/239 (36%), Positives = 136/239 (56%), Gaps = 26/239 (10%)
Query: 15 EEEEDEDD-------------NLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFY 61
E EDEDD GG E WE S R+WE L E G +
Sbjct: 11 EVTEDEDDLQVTRGDISRAKRKQRGGAE-WELS----RTWETLVEGADGTINSTVEGLLE 65
Query: 62 HAQYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVR 121
+ +R L+D T +Q+G+IR+L +++DLS++ +E D RP+R + + + FVR
Sbjct: 66 AGKRKRLLKD------TTPLQRGIIRHLILILDLSQSMSEKDLRPTRYLLALRYAQEFVR 119
Query: 122 EFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQ 179
EFF+QNP+SQ+G++ ++DG+A ++D+ G+P H+ A+ + G SLQN L++ +
Sbjct: 120 EFFEQNPISQLGVLGLRDGLALRVSDMSGNPTGHLTAIQALKMQDPKGLPSLQNGLEMAR 179
Query: 180 GLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLC 238
G L PS+G REVL +Y +L + DPGDI +TI KIR ++GL+A++ IC+ L
Sbjct: 180 GALFHTPSHGTREVLFIYGSLLSSDPGDIHQTIDALISDKIRVGIVGLAAQVAICRELS 238
>gi|451994856|gb|EMD87325.1| hypothetical protein COCHEDRAFT_1197444 [Cochliobolus
heterostrophus C5]
Length = 718
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 111/383 (28%), Positives = 163/383 (42%), Gaps = 81/383 (21%)
Query: 78 TARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTV 137
T Q+G+IR++ +V+DLS A E D RP+R + + ++REFF+QNP+SQ+ ++ +
Sbjct: 93 TKPFQRGIIRHVVLVLDLSEAMLEKDMRPNRFITMINYTQDYIREFFEQNPISQMSVLGM 152
Query: 138 KD-----GVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHRE 192
D G +N L H ++ + G L+ + S R
Sbjct: 153 HDECSRVGESNTL--------PHAQSWHTR----GHRRLRQPAE----------SGPWRH 190
Query: 193 VLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDES 252
I D GD E + +R ++ + I + L D
Sbjct: 191 SPICKGVCEGPDTGDESEYTIATDQEMLRELLLATTTPPVIRQPLVTD------------ 238
Query: 253 HFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKA 312
+ AP A + + A L+ MGFP R E +++C+CH + +G GYTC RC A
Sbjct: 239 -------KTAPATTAQSSESAAALMMMGFPSRVVEDQLTMCACHGNLTMG-GYTCSRCSA 290
Query: 313 RVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC--- 369
+VC LP C C L L+ S HLARSYHHLFP+ + V+ + R C GC
Sbjct: 291 KVCSLPITCPSCQLTLLLSTHLARSYHHLFPLRNWATVS---WSRAREMGSKQCVGCLAA 347
Query: 370 --------------QQSLLSSGNKP-------------GLYVACPKCKKHFCLECDIYIH 402
QQ + K G Y C C+ HFC++CD++ H
Sbjct: 348 FSNPPSNAKENGEAQQDTEAKVTKKHDDDSEEQKASESGRY-ECRACESHFCIDCDMFAH 406
Query: 403 ESLHNCPGCESLRHSNPIVANEG 425
LHNCPGC N + G
Sbjct: 407 MVLHNCPGCLGRLDPNTAATSNG 429
>gi|123469529|ref|XP_001317976.1| transcription factor ssl1 family protein [Trichomonas vaginalis G3]
gi|121900723|gb|EAY05753.1| transcription factor ssl1 family protein [Trichomonas vaginalis G3]
Length = 394
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 123/413 (29%), Positives = 196/413 (47%), Gaps = 61/413 (14%)
Query: 28 LEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIR 87
++ W R D W+ L E+ LR + + + ++ ++ ++L+ + +GLIR
Sbjct: 10 VKRWGRR---DNIWDNLGVGENNDLRLVQETEQWDSEVEKK--KKALLNAS----RGLIR 60
Query: 88 YLYIVIDLSRAAAEMD-FRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLT 146
L +++DLS EM F +RM ++ Q F+ +FF QNPLSQ+ ++ + LT
Sbjct: 61 SLVLILDLSTNGLEMRLFNQNRMKLIQDQTIDFINDFFVQNPLSQLSILATYESTCRILT 120
Query: 147 DLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLL---------SQIPSYGHREVLI 195
L + + H+K + + G+ SL+++L + +L +QI + +EVLI
Sbjct: 121 PLSCNVQDHVKKIKSLSLEDHGGEPSLESSLSIATAILGNGEKNPGLAQIST--TKEVLI 178
Query: 196 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFK 255
+Y +L+TCD I +T+ ++SKI+ S+IGL A++F+ + + +T G Y V + H
Sbjct: 179 VYGSLTTCDNSPIYKTLNLVRDSKIKVSIIGLGAKVFVLEKIAAETKGEYFVPVSIEHLH 238
Query: 256 ELIMEHAPPPPAIAEFAIAN---LIKMGFPQRAGEGSISI-----------CSCHKEVKV 301
++ PP EF + I GF A S + E
Sbjct: 239 DIFHSFVIPP----EFMLNQRRYFIPFGFASLASPTVPSFDVFKLMSNPPSKTNKPETPQ 294
Query: 302 GVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPF-DEVTPLCLNDPRN 360
GY CPRC RV +P C +C L+S +L R+ HL P+ F E +P
Sbjct: 295 YGGYQCPRCGTRVFSIPCFCPVCRDFLISPAYLKRTVCHLTPVPLFVSEESP-------- 346
Query: 361 RSRSTCFGCQQSLLSSGNKPGLYVAC--PKCKKHFCLECDIYIHESLHNCPGC 411
CFGC N P + C PKC K FC +CD +IHE L +CPGC
Sbjct: 347 -DTDHCFGC--------NMPFEEIPCRCPKCNKCFCKKCDPFIHEVLQSCPGC 390
>gi|359474618|ref|XP_003631495.1| PREDICTED: uncharacterized protein LOC100853435 [Vitis vinifera]
Length = 235
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/94 (75%), Positives = 83/94 (88%)
Query: 116 VEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNAL 175
++ +EFFDQ+P SQIGLVT+KDG+A CLTDLGGS +SH+KALMGKL CSGDSSLQNAL
Sbjct: 142 LQTMKQEFFDQDPFSQIGLVTIKDGLAPCLTDLGGSIDSHVKALMGKLECSGDSSLQNAL 201
Query: 176 DLVQGLLSQIPSYGHREVLILYSALSTCDPGDIM 209
+LV+G L+ IPSYG+REVLILYSALS CD GDIM
Sbjct: 202 NLVRGYLNLIPSYGYREVLILYSALSACDTGDIM 235
>gi|194383680|dbj|BAG59198.1| unnamed protein product [Homo sapiens]
Length = 203
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 119/199 (59%), Gaps = 12/199 (6%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ +R + +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKR------VFEHHGQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P HI +L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 182
Query: 209 METIQKCKESKIRCSVIGL 227
+ I+ + KI+ VI +
Sbjct: 183 YDLIK--VDQKIKTKVITV 199
>gi|67528154|ref|XP_661887.1| hypothetical protein AN4283.2 [Aspergillus nidulans FGSC A4]
gi|40739631|gb|EAA58821.1| hypothetical protein AN4283.2 [Aspergillus nidulans FGSC A4]
Length = 277
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 120/194 (61%), Gaps = 8/194 (4%)
Query: 39 RSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRA 98
R+WE L E G + ++ +R L+D T +Q+G+IR++ +++DLS++
Sbjct: 48 RTWETLVEGADGTISSTVGGLLEASKRKRLLKD------TTPLQRGIIRHIILILDLSQS 101
Query: 99 AAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKA 158
E D RP+R + + + FVREFF+QNP+SQ+G++ ++DG+A ++D+ G+P HI A
Sbjct: 102 MMEKDLRPTRYLLTLRYAQEFVREFFEQNPISQVGVIGLRDGLALRISDMSGNPTEHISA 161
Query: 159 L--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCK 216
+ + G SLQN L++ +G L PS+G RE+ I++ +L + DPGDI +TI
Sbjct: 162 IQDLRSQDPKGLPSLQNGLEMARGALFHTPSHGTREIFIVFGSLLSSDPGDIHQTITTLI 221
Query: 217 ESKIRCSVIGLSAE 230
+ KIR ++GL+A+
Sbjct: 222 DDKIRVGIVGLAAQ 235
>gi|145473807|ref|XP_001462567.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124430407|emb|CAK95194.1| unnamed protein product [Paramecium tetraurelia]
Length = 361
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 100/335 (29%), Positives = 162/335 (48%), Gaps = 31/335 (9%)
Query: 85 LIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 144
++R L I+ID++R++ DF+PSR+AV + + AF+ +F + NPLSQIG+ ++
Sbjct: 49 IMRNLLIIIDITRSSKISDFKPSRLAVALQFLPAFIEQFLECNPLSQIGIAVAEEYRCKT 108
Query: 145 LTDLGGSPESHIKALMGKL------GCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYS 198
+ D S +IK + + G S + LQ AL + S + +L++ +
Sbjct: 109 ILDFTSS-WVNIKQYLSTIHSINEAGFSMAACLQTALHV----FSTTQLHAQSSILVVTT 163
Query: 199 ALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELI 258
+ + D D+ E ++C+ + I+ +VI + + + Q T G Y L+E F + I
Sbjct: 164 STYSDDKLDLNEWSERCQSAAIQINVISFTGSINQLIKITQATDGQYLCPLNEFQFSQEI 223
Query: 259 MEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELP 318
+ P + I L+K+GFPQ+ ++C CH E+ V Y CP C ++VC P
Sbjct: 224 QKFVSPQESKNHKMITQLVKIGFPQKLIVSQPTLCQCHLEI-VYNFYKCPVCYSKVCSPP 282
Query: 319 TDCRICGLQLVSSPHLARS--YHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSS 376
C IC +V + RS Y+ L E+T ND + C GC +
Sbjct: 283 LLCPICSTWIVLPHQILRSDGYNTLGVF----EIT----NDGLDH---VCSGCLEP---- 327
Query: 377 GNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
++ C +CK FCL+CDI IH CPGC
Sbjct: 328 --TTVIHSTCERCKNFFCLDCDILIHSKFKVCPGC 360
>gi|440493575|gb|ELQ76030.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH, subunit SSL1 [Trachipleistophora
hominis]
Length = 334
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 109/386 (28%), Positives = 181/386 (46%), Gaps = 60/386 (15%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYL 89
+WE+ Y R+WE L EDE + ++ L T A +KG+IR+
Sbjct: 6 SWEKQYK--RTWENLNEDEE----------------KNTSLEKKLHHTYAPYKKGIIRHF 47
Query: 90 YIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
+I+ID S + DF PS V ++ F+++F+D+NP+S + L+ ++ C + +
Sbjct: 48 HIIIDSSASIELNDFLPSFRYHVTTKLNHFIKKFYDENPISVLSLLIYRNN--KCESYIV 105
Query: 150 GSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIM 209
S + G G +G+ SL N+L++ L++ +E+L++ +L T D +
Sbjct: 106 LDRLSETEGFFGVAG-TGEFSLINSLNVSLEFLNRDDYI--KEILVITGSLYTID----I 158
Query: 210 ETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIA 269
E ++ K+ KI I AE++ K + + T G Y V ++ S L +E P +I
Sbjct: 159 EELRSFKDIKIH--FIAFRAEVYFFKDVAEKTHGKYYVPVEMSDI-SLFLESFCMPNSIN 215
Query: 270 EFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLV 329
+ NL+K+GFPQ G + C + K G Y CP C +VC LP C +C QLV
Sbjct: 216 SGSAHNLLKLGFPQ-VLTGDLVCACCFRYSKKG--YECPVCHTKVCNLPIKCPVCKTQLV 272
Query: 330 SSPHLARSYHHLFPIAPFDE---VTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVAC 386
+S LA+S ++ +P+ F++ +C D R+R C
Sbjct: 273 TSNILAQSLYYCYPLEDFEKAGGACRVCGGDGRDR------------------------C 308
Query: 387 PKCKKHFCLECDIYIHESLHNCPGCE 412
KC +C C +IH L+ C C+
Sbjct: 309 KKCGSIYCERCSYFIHNDLYFCIYCD 334
>gi|429965596|gb|ELA47593.1| transcription factor ssl1, partial [Vavraia culicis 'floridensis']
Length = 381
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 111/383 (28%), Positives = 182/383 (47%), Gaps = 54/383 (14%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYL 89
+WE+ Y R+WE L EDE + ++ L T A +KG+IR+
Sbjct: 53 SWEKQYK--RTWENLNEDEE----------------KNVSLEKKLHHTYAPYKKGIIRHF 94
Query: 90 YIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
+I+ID S + DF PS V ++ F+++F+D+NP+S + L+ ++ C +
Sbjct: 95 HIIIDSSASIELNDFLPSFRYHVTTKLNHFIKKFYDENPISILSLLIYRNN--RCENYIV 152
Query: 150 GSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIM 209
S + G G +G+ SL N+L++ LS+ +E+L++ +L T D
Sbjct: 153 LDRMSETENFFGVAG-TGEFSLMNSLNVSLDFLSRDDHI--KEILVVTGSLYTID----F 205
Query: 210 ETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIA 269
E ++ ++ K+ I L AE++ K++ Q T G Y V ++ S L +E P +I
Sbjct: 206 EEMRAFRDIKVH--FIALRAEVYFFKNIAQKTHGKYYVPVEVSDI-SLFLESFCMPNSIN 262
Query: 270 EFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLV 329
+ NL+K+GFPQ A G + C + K G Y CP C +VC LP C IC QLV
Sbjct: 263 SSSALNLLKLGFPQ-ALTGDLVCACCFRCSKKG--YECPVCHTKVCNLPIKCPICKTQLV 319
Query: 330 SSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKC 389
+S L++S ++ +P+ F++ +C C G G+ C KC
Sbjct: 320 TSNILSQSLYYCYPLEDFEKSNGVC---------RVCGG-------DGSD-----QCKKC 358
Query: 390 KKHFCLECDIYIHESLHNCPGCE 412
+C C +IH L+ C C+
Sbjct: 359 MSVYCEGCCYFIHNDLYFCIYCD 381
>gi|449488681|ref|XP_004158141.1| PREDICTED: serine/threonine-protein kinase TIO-like [Cucumis
sativus]
Length = 899
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 74/98 (75%), Positives = 82/98 (83%), Gaps = 3/98 (3%)
Query: 1 MTNSERKRLNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAF 60
M N E +RLNGEA+EE++D+D N GL AWER+YADDRSWEALQEDESG LRPIDN A
Sbjct: 1 MNNGENRRLNGEADEEDDDDDAN---GLAAWERTYADDRSWEALQEDESGLLRPIDNKAI 57
Query: 61 YHAQYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRA 98
YHAQYRRRLR S +ATTARIQKGLIRYLYIVID S+
Sbjct: 58 YHAQYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKV 95
>gi|323353892|gb|EGA85745.1| Ssl1p [Saccharomyces cerevisiae VL3]
Length = 273
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 122/205 (59%), Gaps = 11/205 (5%)
Query: 25 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKG 84
NGG AWE RSW+ ++ D+ G D ++ + R + R+ Q+G
Sbjct: 71 NGGY-AWEDEIK--RSWDLVKVDDEG-----DMASLVASIVEAR-KKRTAKKNITPYQRG 121
Query: 85 LIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 144
+IR L + +D S A E D RP+R A++ + FV EFFDQNP+SQ+G++ +++G+A
Sbjct: 122 IIRSLILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQL 181
Query: 145 LTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALST 202
++ + G+P+ HI AL + K G+ SLQNAL++ +GLL +P++ REVLI++ +LST
Sbjct: 182 VSQVSGNPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVFGSLST 241
Query: 203 CDPGDIMETIQKCKESKIRCSVIGL 227
DPGDI +TI KIR G+
Sbjct: 242 TDPGDIHQTIDSLVSEKIRVKGFGV 266
>gi|402592150|gb|EJW86079.1| hypothetical protein WUBG_03012, partial [Wuchereria bancrofti]
Length = 220
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 124/216 (57%), Gaps = 8/216 (3%)
Query: 30 AWERSYADDRSW-EALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRY 88
WE YAD + + L+EDESG + + ++RL +R A+++ G++RY
Sbjct: 10 TWEVDYADGLNIRDVLREDESGSIEKSVAKLILDTKRKKRLNNRP-----AKVRLGIMRY 64
Query: 89 LYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL 148
+Y+VID S + A+ +PSR+AV K + F+ +F +QNP+SQ+G+V KD A L L
Sbjct: 65 VYLVIDCSFSMADKSMQPSRLAVTIKALNQFLDKFSEQNPISQVGVVVCKDKRAERLIPL 124
Query: 149 GGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPG 206
G+ ++L + +L C G+ SL N+L L P + REV+++ ++LSTCDP
Sbjct: 125 TGNVRLVKESLSTITELLCHGEFSLHNSLMATIRSLHSYPGHASREVILIVASLSTCDPS 184
Query: 207 DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG 242
I T + K IRCSVI LSAE+F+ K LC T
Sbjct: 185 SIFGTFELLKRYHIRCSVISLSAEIFVFKKLCSITS 220
>gi|403267800|ref|XP_003925995.1| PREDICTED: general transcription factor IIH subunit 2 [Saimiri
boliviensis boliviensis]
Length = 233
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 72/180 (40%), Positives = 107/180 (59%), Gaps = 19/180 (10%)
Query: 85 LIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 144
++R+LY+V+D SR + D +P+R+ K IG++ K A
Sbjct: 1 MMRHLYVVVDGSRTMEDQDLKPNRLTCTLK-----------------IGIIVTKSKRAEK 43
Query: 145 LTDLGGSPESHIKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALST 202
LT+L G+P HI +L + C G+ SL N+L + L +P + REVLI++S+L+T
Sbjct: 44 LTELSGNPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTT 103
Query: 203 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHA 262
CDP +I + I+ K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H
Sbjct: 104 CDPSNIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHV 163
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 361 RSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
R C+GCQ L +YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 178 RMAGFCYGCQGEL----KDQHVYV-CAVCQNVFCVDCDVFVHDSLHCCPGC 223
>gi|429962932|gb|ELA42476.1| hypothetical protein VICG_00575 [Vittaforma corneae ATCC 50505]
Length = 335
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 99/360 (27%), Positives = 173/360 (48%), Gaps = 43/360 (11%)
Query: 61 YHAQYRR------RLRDRSLVATTARI---QKGLIRYLYIVIDLSRAAAEMDFRPSRMAV 111
+ ++RR RL R L T +K +IR+L + ID S + + D+ P+ +
Sbjct: 8 WTQEFRRSWEDNARLIRRPLPTYTKPFNTNKKNIIRHLLVCIDTSASIEKSDYVPTVRNI 67
Query: 112 VAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSL 171
++ + FV +F NPLS + +T + S E + K ++ +G SG+ S
Sbjct: 68 LSNTIPRFVSQFKISNPLSILSFLTCRSVFEK------YSREFNPKIMLNTVG-SGNFSF 120
Query: 172 QNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEM 231
N L ++ S ++EVL++ S++ T D G + K+ I+ +VI + E+
Sbjct: 121 LNCLKSAIEMIRT--STYNKEVLVITSSIGTKDTGAYEQVFSDIKKYNIKVNVISICGEV 178
Query: 232 FICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSIS 291
+ K + + + G + V LD HF+ L+ + P + A + L+K+GFPQ +
Sbjct: 179 TLFKKISELSNGVFKVPLDSFHFEILLHQFTEPLECLE--ATSCLVKLGFPQITSNSGL- 235
Query: 292 ICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVT 351
C CH + + + Y CP CKA +C LP +C IC QLVS ++++SY+ ++P+ PF
Sbjct: 236 -CVCHLKFEHSL-YECPVCKAYICCLPCECPICSTQLVSPLNISKSYYFIYPLKPF---- 289
Query: 352 PLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
+++ + R G L C +C+ H C +C+ ++HE L C C
Sbjct: 290 ---ISNENGKCRKC--GRDAKFL-----------CEECQNHLCEKCNKFMHEDLGFCIFC 333
>gi|145532284|ref|XP_001451903.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124419569|emb|CAK84506.1| unnamed protein product [Paramecium tetraurelia]
Length = 373
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 160/347 (46%), Gaps = 45/347 (12%)
Query: 85 LIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQV----------EAFVREFFDQNPLSQIGL 134
++R L I+ID ++++ DF+PSR+AV + + ++F+ +F + NPLSQIG+
Sbjct: 51 IMRNLLIIIDTTKSSKVSDFKPSRLAVALQFLPVKKHTIIHNQSFIEQFLEGNPLSQIGI 110
Query: 135 VTVKDGVANCLTDLGGSPESHIKALMGKL------GCSGDSSLQNALDLVQGLLSQIPSY 188
++ + D S +IK + + G S + LQ AL + S +
Sbjct: 111 AVAEEYKCKTILDFTSSC-VNIKQYLSTIHSINEAGFSMAACLQTALHV----FSSTQLH 165
Query: 189 GHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVA 248
+L + ++ + D D+ E +KC+ + I+ ++I + + + Q T G Y
Sbjct: 166 AQSSILFVTTSTYSDDKLDLNEWSEKCQSAAIQINMISFAGAIHQLIKITQATDGQYLCP 225
Query: 249 LDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCP 308
++E F + I + P + I L+K+GFPQ+ ++C CH E+ Y CP
Sbjct: 226 INEFQFSQEIQKFISPQESKNHKMITQLVKIGFPQKFIVSQPTLCQCHLEIIYNF-YKCP 284
Query: 309 RCKARVCELPTDCRICGLQLVSSPHLARS--YHHL--FPIAPFDEVTPLCLNDPRNRSRS 364
C ++VC P C IC +V + RS Y+ L F I +ND +
Sbjct: 285 VCYSKVCSPPLLCPICSTWIVLPHQILRSDGYNTLGVFEI----------INDGLDH--- 331
Query: 365 TCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
C GC + ++ C +CK FCL+CD+ IH CPGC
Sbjct: 332 ICQGCLEP------TSVIHSTCERCKNFFCLDCDVLIHSKFKVCPGC 372
>gi|301097433|ref|XP_002897811.1| general transcription factor IIH subunit, putative [Phytophthora
infestans T30-4]
gi|262106559|gb|EEY64611.1| general transcription factor IIH subunit, putative [Phytophthora
infestans T30-4]
Length = 164
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 98/174 (56%), Gaps = 27/174 (15%)
Query: 255 KELIMEHAPPPPAIAEFA--IANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKA 312
K L+ P P +A A A L++MGFPQR G++S+C+CH+ VGY CPRCK+
Sbjct: 2 KRLMTAFTFPSPTVATAASRFATLVEMGFPQRR-SGALSLCTCHQAFTT-VGYLCPRCKS 59
Query: 313 RVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDE--------------VTPLCLNDP 358
+ C+LPT C++C L LVSSPHLARSYHHLFP+A F + ++P
Sbjct: 60 KSCDLPTTCQVCNLPLVSSPHLARSYHHLFPVAKFAQHLLRSGATGEKGAKISP------ 113
Query: 359 RNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCE 412
+ CFGC L G C C+ FC ECD Y+H+SLHNCPGC
Sbjct: 114 -ELVQKKCFGCLLLLGLDGEGAAY--ECATCQNVFCSECDTYVHDSLHNCPGCS 164
>gi|321447765|gb|EFX61168.1| hypothetical protein DAPPUDRAFT_340521 [Daphnia pulex]
Length = 167
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 104/182 (57%), Gaps = 23/182 (12%)
Query: 160 MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESK 219
M C+G++SLQN+ + L +P++ REVL L L + I+ KE+
Sbjct: 7 MKDTSCNGETSLQNSFERAMCGLKNMPAHSSREVLTLLVILVIYK-----KKIKSFKENN 61
Query: 220 IRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKM 279
IR S+IGL+AE+ IC+ + + TGG+Y+V LD+ + KE ++ + P A+A A+L+KM
Sbjct: 62 IRVSIIGLAAEVRICQEIAKRTGGTYNVLLDDHYLKETLILNQVQPLAVAGTMEASLVKM 121
Query: 280 GFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYH 339
GF + GY CP+ +R CELP +C+ CGL LVS+PHLARSYH
Sbjct: 122 GFSNNS------------------GYNCPQSGSRYCELPVECKQCGLTLVSAPHLARSYH 163
Query: 340 HL 341
L
Sbjct: 164 LL 165
>gi|402469018|gb|EJW04086.1| hypothetical protein EDEG_01608 [Edhazardia aedis USNM 41457]
Length = 341
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 101/389 (25%), Positives = 174/389 (44%), Gaps = 62/389 (15%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYL 89
+WE+ Y RSW++ G + +R + T + GLIR+
Sbjct: 6 SWEKKYT--RSWQSTDVRNKG-----------NEPLKRHISKDD---ATKFKKLGLIRHF 49
Query: 90 YIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
IV+D S DF PS ++E FV +F + NP+S + + + + + +L
Sbjct: 50 CIVVDHSTNIDSKDFLPSFRISTKNKLEKFVEKFSEDNPISTLTVCVNSNKTSESMQNLN 109
Query: 150 GSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIM 209
+ G SL+ AL+ +L S +E+L++ +LS D +
Sbjct: 110 SPGD-------------GFFSLKKALETGYEVLKD--STNIKEMLLIIFSLSINDRNGLE 154
Query: 210 ETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIA 269
TI+ ++ I+ ++I L AE+ I K +C TGG + V LD++H++ +M P ++
Sbjct: 155 TTIENVVKANIKVNIINLCAELKILKTVCDRTGGKFCVPLDDNHYETSLMSFL-TPTSVP 213
Query: 270 EFAIANLIKMGFP--QRAGEGSISICSCHKEV--KVGVGYTCPRCKARVCELPTDCRICG 325
I+ LI++GFP + + + + C CH ++ Y+C +C A +C LP +C IC
Sbjct: 214 NSTIS-LIQIGFPKVEVSDKNTPFCCVCHLKIIRPPFETYSCVKCSAILCSLPVECPICD 272
Query: 326 LQLVSSPHLARSYHHLFPIAPFDEVTPLCL--NDPRNRSRSTCFGCQQSLLSSGNKPGLY 383
SS L ++ HH + + F C+ ND GC Q
Sbjct: 273 TLNASSIGLCKNIHHFYVLEDFVPSDGFCVVCNDK---------GCMQ------------ 311
Query: 384 VACPKCKKHFCLECDIYIHESLHNCPGCE 412
C KC FC +C+ ++H++++ C CE
Sbjct: 312 --CQKCLNVFCRDCNSFLHDNINFCFYCE 338
>gi|169596905|ref|XP_001791876.1| hypothetical protein SNOG_01225 [Phaeosphaeria nodorum SN15]
gi|160707395|gb|EAT90874.2| hypothetical protein SNOG_01225 [Phaeosphaeria nodorum SN15]
Length = 716
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 105/211 (49%), Gaps = 46/211 (21%)
Query: 243 GSYSVALDESHFKELIMEHAPPPPAIAEFAI----------ANLIKMGFPQRAGEGSISI 292
G Y++A D+ KEL++ PP I + A A L+ MGFP R E ++
Sbjct: 206 GEYTIATDQEMLKELLIATTTPP-VIRQTATTTDAPPPESAAALMMMGFPSRVVEDKPTM 264
Query: 293 CSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTP 352
C+CH + +G GYTC RC A+VC LP C C L L+ S HLARSYHHLFP+ + V+
Sbjct: 265 CACHGNLTMG-GYTCSRCSAKVCSLPITCPSCQLTLLLSTHLARSYHHLFPLRNWATVS- 322
Query: 353 LCLNDPRNRSRSTCFGC-----------------QQSLLSSGNK-------------PGL 382
+ R + C C +Q+L ++G+K G
Sbjct: 323 --WSRAREKGSKECVSCLSSFSKPPASDTERTQTEQNLETNGHKRDADDSEEQKASESGR 380
Query: 383 YVACPKCKKHFCLECDIYIHESLHNCPGCES 413
Y C C+ HFC++CD++ H LHNCPGC S
Sbjct: 381 Y-ECRACESHFCIDCDMFAHMVLHNCPGCLS 410
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 42/62 (67%)
Query: 78 TARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTV 137
T Q+G+IR++ +V+DLS A E D RP+R + + +VREFF+QNP+SQ+ ++ +
Sbjct: 94 TKPFQRGIIRHVVLVLDLSEAMMEKDMRPNRYITMINYAQDYVREFFEQNPISQMSVLGM 153
Query: 138 KD 139
D
Sbjct: 154 HD 155
>gi|387592763|gb|EIJ87787.1| hypothetical protein NEQG_01859 [Nematocida parisii ERTm3]
gi|387595388|gb|EIJ93012.1| hypothetical protein NEPG_01967 [Nematocida parisii ERTm1]
Length = 366
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/344 (28%), Positives = 162/344 (47%), Gaps = 30/344 (8%)
Query: 78 TARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTV 137
T +Q+G++R + +V+D+S + E DF PSR V K V F REF + NPLS +GL V
Sbjct: 34 TENLQRGIVRRILLVLDMSHSIEERDFLPSRKYYVKKGVMKFFREFIESNPLSTVGLAVV 93
Query: 138 KDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILY 197
G++ ++ + E I+ + +G+ SL +A + + +EV+ +
Sbjct: 94 CGGMSYLVSSI-LCEEEEIEMCFSQNEGAGNFSLGSAFETINEFFHGCSFL--KEVVFII 150
Query: 198 SALSTC--DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFK 255
S + P + T+ I I ++ EM I + L +++GG + +
Sbjct: 151 SGFTFVGSSPFILKSTLIN---KGIIMHTIHMAGEMEILRKLSEESGGVFGIVNCPEDLS 207
Query: 256 ELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVC 315
L+ PPP A A +++K+GFP E +IC+CH ++K GY CP C +VC
Sbjct: 208 TLLGLICIPPPHSAS-ARLSMLKIGFPSPIHEN--TICACHLDLKEW-GYECPFCTTKVC 263
Query: 316 ELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLS 375
++P C +C L + HL ++ H + + P+ + + TC GC +
Sbjct: 264 KVPGVCPVCENILSAPVHLLKALH-------WSDSAPIYV----AAIKGTCRGCFE---- 308
Query: 376 SGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLRHSNP 419
N L+ +CP CK CL+C +I + L+ C C S P
Sbjct: 309 --NNIQLH-SCPGCKNSLCLDCTRFIRQELNFCIFCPGAVSSVP 349
>gi|402580964|gb|EJW74913.1| hypothetical protein WUBG_14179, partial [Wuchereria bancrofti]
Length = 144
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 65/138 (47%), Positives = 89/138 (64%), Gaps = 4/138 (2%)
Query: 216 KESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIAN 275
K IRCSVI LSAE+F+ K LC T G + V LD +HF+ ++ EHA PP + A ++
Sbjct: 3 KRYHIRCSVISLSAEIFVFKKLCSITSGRHDVVLDSTHFEVILSEHAIPP-VCSRNAESS 61
Query: 276 LIKMGFPQRAGEGSISICSCHK-EVKV--GVGYTCPRCKARVCELPTDCRICGLQLVSSP 332
+++MGFP S C CH+ EV+ G G+ CP+C AR C LP +CRIC L L+S+P
Sbjct: 62 VVRMGFPAHESIDCPSFCLCHQSEVRPPGGRGFFCPQCGARYCSLPVECRICKLTLISAP 121
Query: 333 HLARSYHHLFPIAPFDEV 350
LARS H+L P+ F+E+
Sbjct: 122 QLARSLHNLLPLPAFEEI 139
>gi|378754973|gb|EHY65001.1| hypothetical protein NERG_02057 [Nematocida sp. 1 ERTm2]
Length = 357
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/346 (28%), Positives = 158/346 (45%), Gaps = 50/346 (14%)
Query: 78 TARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTV 137
T +Q+G++R + +V+D+S + E DF PSR V K V F REF + NPLS +GL V
Sbjct: 34 TENMQRGIVRRVLLVLDMSSSIEERDFLPSRKYYVKKGVIKFFREFTESNPLSTVGLAVV 93
Query: 138 KDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILY 197
G++ ++ + E I+ + G SL +A + V+ Q S+ +EV+ +
Sbjct: 94 CGGMSYLVSSI-LCEEDEIEMCFAQNEGQGGFSLGSAFETVKEFF-QGCSF-LKEVIFIV 150
Query: 198 SAL------------STCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSY 245
S S + G IM TI ++ EM I + + ++ GG +
Sbjct: 151 SGFTFVGRSPFILKNSLINKGIIMHTIH-------------MAGEMEILRKISEECGGIF 197
Query: 246 SVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGY 305
+ L+ PPP A A +++K+GFP E +IC+CH E+K GY
Sbjct: 198 GIVNCPEDLSTLLGLICIPPPHSAS-ARLSMLKIGFPSSIQEN--TICACHLELK-EWGY 253
Query: 306 TCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRST 365
CP C +VC++P C IC L + HL ++ H + + P+ + + R R
Sbjct: 254 ECPFCTTKVCKVPGVCPICENILSAPVHLLKALH-------WSDSAPIYAPEGKGRCR-- 304
Query: 366 CFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
GC + + CP CK C++C +I + L+ C C
Sbjct: 305 --GCSEENIQLN-------GCPGCKSRLCMDCTGFIRQELNFCIFC 341
>gi|56786210|gb|AAW29208.1| Ssl1 [Drosophila yakuba]
gi|56786212|gb|AAW29209.1| Ssl1 [Drosophila yakuba]
gi|56786214|gb|AAW29210.1| Ssl1 [Drosophila yakuba]
gi|56786216|gb|AAW29211.1| Ssl1 [Drosophila yakuba]
gi|56786226|gb|AAW29216.1| Ssl1 [Drosophila yakuba]
gi|56786228|gb|AAW29217.1| Ssl1 [Drosophila yakuba]
gi|56786230|gb|AAW29218.1| Ssl1 [Drosophila yakuba]
gi|56786232|gb|AAW29219.1| Ssl1 [Drosophila yakuba]
Length = 166
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 96/165 (58%), Gaps = 12/165 (7%)
Query: 160 MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESK 219
+ + + + SLQN LDL L +PS+ RE++I+ +L+TCDP DI TI + K+
Sbjct: 2 LANVSLTSEPSLQNGLDLALKSLKVVPSHASREIVIIMGSLTTCDPVDINITIDELKKEG 61
Query: 220 IRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKM 279
IRCSVI LSAE+ + ++L Q T G++ LD++HF++ +M PPPA A+ +LI+M
Sbjct: 62 IRCSVISLSAEIHVARYLTQQTMGTFGAVLDDAHFRDQLMSQVDPPPA-AKTQHNSLIRM 120
Query: 280 GFPQRAGE-----GSISICSCHKE------VKVGVGYTCPRCKAR 313
GFP E +S+C CH E G+ CP+C ++
Sbjct: 121 GFPHTKNEVEGKDAPLSMCMCHIENLEEPSELTTTGHHCPQCNSK 165
>gi|56786218|gb|AAW29212.1| Ssl1 [Drosophila santomea]
gi|56786220|gb|AAW29213.1| Ssl1 [Drosophila santomea]
gi|56786222|gb|AAW29214.1| Ssl1 [Drosophila santomea]
gi|56786224|gb|AAW29215.1| Ssl1 [Drosophila santomea]
gi|56786234|gb|AAW29220.1| Ssl1 [Drosophila santomea]
gi|56786236|gb|AAW29221.1| Ssl1 [Drosophila santomea]
gi|56786238|gb|AAW29222.1| Ssl1 [Drosophila santomea]
gi|56786240|gb|AAW29223.1| Ssl1 [Drosophila santomea]
Length = 166
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 95/165 (57%), Gaps = 12/165 (7%)
Query: 160 MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESK 219
+ + + + SLQN LDL L +PS+ RE++I+ +L+TCDP DI TI K+
Sbjct: 2 LANVSLTSEPSLQNGLDLALKSLKVVPSHASREIVIIMGSLTTCDPVDINITIDDLKKEG 61
Query: 220 IRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKM 279
IRCSVI LSAE+ + ++L Q T G++ LD++HF++ +M PPPA A+ +LI+M
Sbjct: 62 IRCSVISLSAEIHVARYLTQQTMGTFGAVLDDAHFRDQLMSQVDPPPA-AKTQHNSLIRM 120
Query: 280 GFPQRAGE-----GSISICSCHKE------VKVGVGYTCPRCKAR 313
GFP E +S+C CH E G+ CP+C ++
Sbjct: 121 GFPHTKNEVEGKDAPLSMCMCHIENLEEPSELTTTGHHCPQCNSK 165
>gi|95007103|emb|CAJ20323.1| ssl1-like protein [Toxoplasma gondii RH]
Length = 647
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 121/435 (27%), Positives = 172/435 (39%), Gaps = 64/435 (14%)
Query: 7 KRLNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYR 66
+ L G + +ED G AWE +RSW+ L E GF+ +A + R
Sbjct: 203 QELEGNGTDAAAEEDLY---GQYAWE--CEAERSWDQLIESSEGFVLLHGGAAEEGVKTR 257
Query: 67 RRLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQ 126
R R + +I+KG+IR L ++ID+S A E DFRP R+ V + E F+ F Q
Sbjct: 258 RVDRRQQ---HEPQIKKGIIRSLVLLIDMSEAMREKDFRPDRLRCVCQLAEEFIGTFLLQ 314
Query: 127 NPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGC--------------------- 165
NPL+Q+ V + A L G + G
Sbjct: 315 NPLAQLAQVALIGPSAEPLAARGEAARDSAAVSARPSGSASMQLFSSSASESIAALREKR 374
Query: 166 ------SGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESK 219
+G SL N L L + LL+ +P Y REVL+L+ +L TCD G I ETI K+S
Sbjct: 375 KHPGVGTGVPSLNNGLHLAKDLLAGVPPYCTREVLVLFGSLRTCDVGCIEETIAAVKKSN 434
Query: 220 IRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA---IAEFAIANL 276
I C+VI L+AE+ + K G S S HA PA A+++
Sbjct: 435 ICCNVICLAAELHVLKFSESLPGNGRSTRCASSPRASARSSHATHSPASLVCQHAALSHP 494
Query: 277 IKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLAR 336
+ F + G S + P + P + L+S+P LA
Sbjct: 495 HGISFAEVDEHGGPLQLSPTPHFLL---LRLPPVRREALHHPQPLSM----LLSAPRLAG 547
Query: 337 SYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLE 396
+ + P D ++ C C L G + CP C + FC +
Sbjct: 548 RH---LAVVPADA----------PEAKRLCACCTTQLDRGGAQ------CPDCGEIFCHD 588
Query: 397 CDIYIHESLHNCPGC 411
CDIY HE L C C
Sbjct: 589 CDIYSHEQLRQCAFC 603
>gi|85000913|ref|XP_955175.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65303321|emb|CAI75699.1| hypothetical protein, conserved [Theileria annulata]
Length = 319
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/303 (27%), Positives = 148/303 (48%), Gaps = 51/303 (16%)
Query: 30 AWERSYADDRSWEALQEDES--GFLRPIDNSAFYH---AQYRRRLRDRSLVATTARIQKG 84
+WE D+SWE L E + F++P + Y Y L+ ++ R G
Sbjct: 32 SWELDV--DKSWEQLIEKDGILQFIKP--QTKIYQEFDIDYNTNLKQHNVDIIYKR---G 84
Query: 85 LIRY------LYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVK 138
+IR+ + I+ D+S EMDF+P R+ ++ F+ + P++Q+G++ ++
Sbjct: 85 IIRFVTVFWSIMILFDMSEQMHEMDFKPDRLYCAFNSLKEFMNVLYGSGPITQVGIIVMR 144
Query: 139 DGVANCLTDLGGSPESHIKALMGKL--GCSGDSSLQNALDLVQGLLSQIPSYGHREVLIL 196
+ + N +T G +P+ ++ L L G G SSLQN L++ ++ ++P Y RE+LI+
Sbjct: 145 NKICNVITQFGTNPDEQMELLSNILKDGPEGSSSLQNGLEMCLKIMCELPYYMTREILII 204
Query: 197 YSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKE 256
+ + T DPG+I+ T+ K K++ I + I LS E++I K G + V+
Sbjct: 205 FGSNKTLDPGNILITLDKLKQNFITVNCISLSPELYILK-----GCGIFMVS-------- 251
Query: 257 LIMEHAPPPPAIAEFAIANLIKMGFPQRAG---EGSISICSCHKEVKVGVGYTCPRCKAR 313
PP I+ A +LI P ++ E +I+ C+ + + +GY C C+
Sbjct: 252 --------PPDISR-AFHHLI----PPKSFHKIERNINCSGCN--LNIEIGYECQNCQGI 296
Query: 314 VCE 316
CE
Sbjct: 297 FCE 299
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 17/88 (19%)
Query: 324 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 383
CG+ +VS P ++R++HHL P F ++ RN + C GC ++ +
Sbjct: 245 CGIFMVSPPDISRAFHHLIPPKSFHKIE-------RNIN---CSGCNLNI-------EIG 287
Query: 384 VACPKCKKHFCLECDIYIHESLHNCPGC 411
C C+ FC CD YIH+ LH CP C
Sbjct: 288 YECQNCQGIFCEYCDKYIHQDLHQCPIC 315
>gi|269859684|ref|XP_002649566.1| transcription/repair factor TFIIH subunit [Enterocytozoon bieneusi
H348]
gi|220066929|gb|EED44398.1| transcription/repair factor TFIIH subunit [Enterocytozoon bieneusi
H348]
Length = 346
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 162/332 (48%), Gaps = 28/332 (8%)
Query: 82 QKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGV 141
+K +IR L +ID+S A + ++ P+ + + ++ F F NPLS+I T V
Sbjct: 39 RKSIIRNLVFIIDMSEAIEKTEYLPTIRSFILPELSDFSDNFVKLNPLSKITFTTFNYKV 98
Query: 142 ANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLL-SQIPSYGHREVLILYSAL 200
N + K L+ G +G S + L + G+ ++I S +E L++ S++
Sbjct: 99 LN-------TAFKFDKNLLSSYG-TGHFSFTSCLSYINGITDTKITS---KECLLIISSV 147
Query: 201 STCDPG-DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIM 259
+ + + +++ + KI+ ++I + E+ + K +C TGG Y V ++ FK ++
Sbjct: 148 GVINEEINFDKVMKEIIQKKIKINIISICGEVTLLKKVCISTGGKYVVPINSFQFKSILS 207
Query: 260 EHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPT 319
+ PP ++ +LI++GFP+ + C CH + V + CPRCK VC +P+
Sbjct: 208 DFLYPPESLD--LKCSLIEVGFPKNIYTQHL--CVCHLNL-CSVLFECPRCKGLVCTIPS 262
Query: 320 DCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNK 379
C IC L+L+SS + + + + PF ++ + + ++ C+GC++ + S
Sbjct: 263 TCPICKLELISSIDICDLICYNYYLEPFIKIAT--SKELSSLEKNKCYGCEKLEVIS--- 317
Query: 380 PGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
C KC FC CD +H ++ CP C
Sbjct: 318 -----VCNKCLSPFCYNCDAKLHNVINFCPFC 344
>gi|13529149|gb|AAH05345.1| GTF2H2 protein [Homo sapiens]
gi|30582385|gb|AAP35419.1| general transcription factor IIH, polypeptide 2, 44kDa [Homo
sapiens]
Length = 165
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 90/157 (57%), Gaps = 10/157 (6%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ +R + +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKR------VFEHHGQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQI 185
+P HI +L + C G+ SL N+L + L +
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKLV 159
>gi|30584663|gb|AAP36584.1| Homo sapiens general transcription factor IIH, polypeptide 2, 44kDa
[synthetic construct]
Length = 166
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 90/157 (57%), Gaps = 10/157 (6%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ +R + +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKR------VFEHHGQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQI 185
+P HI +L + C G+ SL N+L + L +
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKLV 159
>gi|383141961|gb|AFG52334.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141967|gb|AFG52337.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141975|gb|AFG52341.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141977|gb|AFG52342.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141987|gb|AFG52347.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
Length = 74
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/75 (74%), Positives = 59/75 (78%), Gaps = 3/75 (4%)
Query: 299 VKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDP 358
VKVG GYTCPRCKARVCELPT+C ICGL LVSSPHLARSYHHLFP+ PF+EV ND
Sbjct: 1 VKVGGGYTCPRCKARVCELPTECHICGLTLVSSPHLARSYHHLFPVTPFEEVLRTSSND- 59
Query: 359 RNRSRSTCFGCQQSL 373
R TCFGCQQ L
Sbjct: 60 --RLPRTCFGCQQFL 72
>gi|26347121|dbj|BAC37209.1| unnamed protein product [Mus musculus]
Length = 201
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 88/154 (57%), Gaps = 10/154 (6%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDE+G L+ + A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDETGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 151 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLL 182
+P HI +L + C G+ SL N+L + L
Sbjct: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTL 156
>gi|269860338|ref|XP_002649891.1| transcription/repair factor TFIIH subunit [Enterocytozoon bieneusi
H348]
gi|220066731|gb|EED44204.1| transcription/repair factor TFIIH subunit [Enterocytozoon bieneusi
H348]
Length = 346
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 85/332 (25%), Positives = 162/332 (48%), Gaps = 28/332 (8%)
Query: 82 QKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGV 141
+K +IR L +ID+S A + ++ P+ + + ++ F F NPLS+I V
Sbjct: 39 RKSIIRNLVFIIDMSEAIEKTEYLPTIRSFILPELSDFSDNFVKLNPLSKITFTIFNYKV 98
Query: 142 ANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLL-SQIPSYGHREVLILYSAL 200
N + K L+ G +G S + L + G+ ++I S +E L++ S++
Sbjct: 99 LN-------TAFKFDKNLLSSYG-TGHFSFTSCLSYINGITDTKITS---KECLLIISSV 147
Query: 201 STCDPG-DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIM 259
+ + + +++ + KI+ ++I + E+ + K +C TGG Y V ++ FK ++
Sbjct: 148 GVINKEINFDKVMKEIIQKKIKINIISICGEVTLLKKVCISTGGKYVVPINSFQFKSILS 207
Query: 260 EHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPT 319
+ PP ++ +LI++GFP+ + C+CH + V + CP+CK VC +P+
Sbjct: 208 DFLYPPESLD--LKCSLIEVGFPKNIYTQHL--CACHLNL-CSVLFECPKCKGLVCTIPS 262
Query: 320 DCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNK 379
C IC L+L+SS + + + + PF ++ + + ++ C+GC++ + S
Sbjct: 263 ACPICKLELISSIDICDLICYNYHLEPFIKIAT--SKELSSLEKNKCYGCEKLEVIS--- 317
Query: 380 PGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
C KC FC CD +H ++ CP C
Sbjct: 318 -----VCNKCLSPFCYNCDAKLHNVINFCPFC 344
>gi|1737212|gb|AAC52046.1| basic transcription factor 2 p44, partial [Homo sapiens]
Length = 143
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 57/108 (52%), Positives = 75/108 (69%), Gaps = 10/108 (9%)
Query: 304 GYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSR 363
GY CP+C+A+ CELP +C+ICGL LVS+PHLARSYHHLFP+ F E+ PL + N R
Sbjct: 36 GYFCPQCRAKYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-PL---EEYNGER 91
Query: 364 STCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
C+GCQ L +YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 92 -FCYGCQGEL----KDQHVYV-CAVCQNVFCVDCDVFVHDSLHCCPGC 133
>gi|383141959|gb|AFG52333.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141963|gb|AFG52335.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141965|gb|AFG52336.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141969|gb|AFG52338.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141971|gb|AFG52339.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141973|gb|AFG52340.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141979|gb|AFG52343.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141981|gb|AFG52344.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141983|gb|AFG52345.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141985|gb|AFG52346.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141989|gb|AFG52348.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141991|gb|AFG52349.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
Length = 74
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 55/75 (73%), Positives = 58/75 (77%), Gaps = 3/75 (4%)
Query: 299 VKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDP 358
VKVG GYTCPRCKAR CELPT+C ICGL LVSSPHLARSYHHLFP+ PF+EV ND
Sbjct: 1 VKVGGGYTCPRCKARACELPTECHICGLTLVSSPHLARSYHHLFPVTPFEEVLRTSSND- 59
Query: 359 RNRSRSTCFGCQQSL 373
R TCFGCQQ L
Sbjct: 60 --RLPRTCFGCQQFL 72
>gi|426384438|ref|XP_004058775.1| PREDICTED: general transcription factor IIH subunit 2-like [Gorilla
gorilla gorilla]
Length = 260
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 75/113 (66%), Gaps = 2/113 (1%)
Query: 151 SPESHIKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 208
+P HI +L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 96 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 155
Query: 209 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEH 261
+ I+ K +KIR SVIGLSAE+ +C L ++TGG Y V LDESH+KEL+ H
Sbjct: 156 YDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGIYHVILDESHYKELLTHH 208
>gi|361068769|gb|AEW08696.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
Length = 74
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/75 (72%), Positives = 58/75 (77%), Gaps = 3/75 (4%)
Query: 299 VKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDP 358
VKVG GYTCPRCKA VCELPT+C ICGL LVSSPHLARSYHHLFP+ PF++V ND
Sbjct: 1 VKVGGGYTCPRCKAHVCELPTECHICGLTLVSSPHLARSYHHLFPVTPFEKVLRTSSND- 59
Query: 359 RNRSRSTCFGCQQSL 373
R TCFGCQQ L
Sbjct: 60 --RLPRTCFGCQQFL 72
>gi|147803583|emb|CAN77666.1| hypothetical protein VITISV_035971 [Vitis vinifera]
Length = 328
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/68 (75%), Positives = 60/68 (88%)
Query: 145 LTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCD 204
+ DLGGS +SH+KALMGKL CSGDSSLQNAL+LV+G L+ IPSYG+REVLILYSALS CD
Sbjct: 114 MQDLGGSIDSHVKALMGKLECSGDSSLQNALNLVRGYLNLIPSYGYREVLILYSALSACD 173
Query: 205 PGDIMETI 212
GDI+ T+
Sbjct: 174 TGDIIPTL 181
>gi|294942110|ref|XP_002783381.1| TFIIH basal transcription factor complex p44 subunit, putative
[Perkinsus marinus ATCC 50983]
gi|239895836|gb|EER15177.1| TFIIH basal transcription factor complex p44 subunit, putative
[Perkinsus marinus ATCC 50983]
Length = 188
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 103/195 (52%), Gaps = 20/195 (10%)
Query: 223 SVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFP 282
SVI LS E++ + + + TGG++SVA HFK L+ +H PP ++ + IKMGFP
Sbjct: 8 SVISLSPELYALRKVVEMTGGTFSVATSPIHFKRLMQKHLTPPNWVSS---PSYIKMGFP 64
Query: 283 -QRAGEGSISI-----CSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLAR 336
+RA +G+ + C CH ++ Y CP+C + VCE+P +C +C L LV L +
Sbjct: 65 VRRACDGNHTADPPIKCMCHNRLQKTFVYICPQCHSPVCEIPVNCPVCRLPLVDDDALKK 124
Query: 337 SYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLE 396
+ H++ + P + P ++ P++ TC C G + C +C C E
Sbjct: 125 HHRHIYSM-PTYTLLPT-VDYPKSY---TCQFCGTDFTEGGAR------CDQCLSDVCYE 173
Query: 397 CDIYIHESLHNCPGC 411
CD++ H L +CPGC
Sbjct: 174 CDMFAHNKLRHCPGC 188
>gi|154318002|ref|XP_001558320.1| hypothetical protein BC1G_02984 [Botryotinia fuckeliana B05.10]
Length = 211
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 95/168 (56%), Gaps = 11/168 (6%)
Query: 25 NGGLEAWERSYAD-DRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQK 83
NGG + ++ D RSW+ + E G + + +R LRD T +Q+
Sbjct: 49 NGGGNRRKAAWEDIQRSWDTVVEGADGSINSTVEGLREANKRKRLLRD------TTPLQR 102
Query: 84 GLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVAN 143
G+IR+ +++DLS A E D RP+R + + FV E+F+QNP+SQ+G++ ++DG+A
Sbjct: 103 GIIRHFILILDLSFAMTEKDMRPTRYLLTIRYASEFVTEYFEQNPISQLGIIGMRDGIAV 162
Query: 144 CLTDLGGSPESHI---KALMGKLGCSGDSSLQNALDLVQGLLSQIPSY 188
++D+ G+P HI KAL G G+ SLQNAL++ + L PS+
Sbjct: 163 RISDMSGNPTEHIERLKALRVDQG-QGNPSLQNALEMSRAALFHAPSH 209
>gi|736404|gb|AAA64502.1| BTF2p44 [Homo sapiens]
Length = 130
Score = 100 bits (250), Expect = 1e-18, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Query: 151 SPESHIKA 158
+P I +
Sbjct: 123 NPRKXISS 130
>gi|115432926|ref|XP_001216600.1| hypothetical protein ATEG_07979 [Aspergillus terreus NIH2624]
gi|114189452|gb|EAU31152.1| hypothetical protein ATEG_07979 [Aspergillus terreus NIH2624]
Length = 202
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 98/169 (57%), Gaps = 13/169 (7%)
Query: 26 GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGL 85
GG E WE S R+WE L E G + + +R LRD T +Q+G+
Sbjct: 42 GGAE-WEVS----RTWETLVEGADGTISSTVEGLLEAGKRKRLLRD------TTPLQRGI 90
Query: 86 IRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 145
IR+L +++DLS + AE D RP+R + + + FVREFF+QNP+SQ+G++ ++DG+A +
Sbjct: 91 IRHLILILDLSLSMAEKDLRPTRYLLTLRYAQEFVREFFEQNPISQLGVLGLRDGLAVRI 150
Query: 146 TDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHRE 192
+D+ G+P HI A+ + G SLQN L++ +G L + + HRE
Sbjct: 151 SDMSGNPTEHISAIQALRDQDPKGLPSLQNGLEMARGALLYVLTLNHRE 199
>gi|70917739|ref|XP_732957.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56504309|emb|CAH83594.1| hypothetical protein PC300587.00.0 [Plasmodium chabaudi chabaudi]
Length = 161
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 86/145 (59%), Gaps = 2/145 (1%)
Query: 105 RPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMG--K 162
+P+R+ V+ + VE F++ FF +NP+ +G+V +K+ A + L + + + +L+ K
Sbjct: 1 KPNRITVIFECVEIFLKNFFFKNPVGHVGVVALKNSSAKLIQQLTSNIDDVLNSLVKEQK 60
Query: 163 LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRC 222
G G SLQ L++ LL +P YG +E+LI+Y ++ TCD +I++ + ++ +
Sbjct: 61 EGLQGSPSLQEGLEIAHNLLMDMPLYGTKEILIMYGSIRTCDKKNILKYLDLLIKNNMYV 120
Query: 223 SVIGLSAEMFICKHLCQDTGGSYSV 247
+ I ++ EM I KH+C+ T G Y +
Sbjct: 121 NCISIAPEMHILKHICEKTHGIYKI 145
>gi|407425981|gb|EKF39551.1| DNA repair and transcription factor protein [Trypanosoma cruzi
marinkellei]
Length = 356
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 88/362 (24%), Positives = 148/362 (40%), Gaps = 57/362 (15%)
Query: 91 IVIDLSRAA-AEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
+++D S A + D+ P+R+ + Q+ FV + D NPL+ +G+VT++DGVA+ L
Sbjct: 6 LLLDGSEAMNSSADYLPTRLLALRPQLGRFVHAYLDANPLASLGVVTMRDGVAHRLNSCT 65
Query: 150 GSPESHIKALMGK---LGCSGDSSLQNALDLVQGLLSQI-----------PSYGHRE--- 192
+ I+ L K G SG SL+N L L + P G +E
Sbjct: 66 TNASDIIQTLEVKYFLFGGSGAMSLENGLRFALSELVDMKRIAKRVRRTEPRAGGKEARE 125
Query: 193 -------VLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSY 245
+L++ S+++ DP D+ I+ + +IR V+ + + + TGG+
Sbjct: 126 EPTARLRILLVSSSVTIIDPHDVFGVIKMLAKLRIRVDVVSFCGAVHVFEEAAVSTGGTL 185
Query: 246 SVALDESHFKELIMEHAPPPPA-IAEFAIANLIKMGFP-------QRAGEGSISICSCHK 297
++ H E++ A P I +I++GFP GEG
Sbjct: 186 YTPMNYDHLTEVLGRLASPDKRHICPEERPTMIRIGFPVYIECEDSEGGEGG-------- 237
Query: 298 EVKVGVGYT-CPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLN 356
Y CP+C +P+ C +C L L S+P + ++ + P E L+
Sbjct: 238 ----STSYVACPQCALMQTSIPSTCPLCKLLLCSAPLIHNTFIANNELCPVSENV---LD 290
Query: 357 DPRNRSRST-------CFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCP 409
+ T C CQ ++ K L C C C+ C+ Y+ E + CP
Sbjct: 291 AFEGAEKPTEDYLNERCSLCQYGMMGEDGK-ALVWRCNSCHCLRCVSCEKYVRERIGLCP 349
Query: 410 GC 411
C
Sbjct: 350 TC 351
>gi|426384446|ref|XP_004058778.1| PREDICTED: general transcription factor IIH subunit 2-like, partial
[Gorilla gorilla gorilla]
Length = 119
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 82/129 (63%), Gaps = 15/129 (11%)
Query: 245 YSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVG 304
Y V LDESH+KEL+ H PPPA + +LI+MG + +G+ + +G G
Sbjct: 2 YHVILDESHYKELLTHHVSPPPASSSSE-CSLIRMG---KHLDGNTE-----PGLTLG-G 51
Query: 305 YTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRS 364
Y CP+C+A+ CELP +C+ICGL LVS+PHLARSYHHLFP+ F E+ PL + N R
Sbjct: 52 YFCPQCRAKYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-PL---EEYNGER- 106
Query: 365 TCFGCQQSL 373
C+GCQ L
Sbjct: 107 FCYGCQGEL 115
>gi|222871523|gb|EEF08654.1| predicted protein [Populus trichocarpa]
Length = 104
Score = 94.0 bits (232), Expect = 1e-16, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 59/77 (76%)
Query: 185 IPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS 244
+P + REVLI++S+L+TCDP +I + I+ K +KIR SVIGLSAE+ +C L ++TGG+
Sbjct: 1 MPGHTSREVLIIFSSLTTCDPSNIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGT 60
Query: 245 YSVALDESHFKELIMEH 261
Y V LDESH+KEL+ H
Sbjct: 61 YHVILDESHYKELLTHH 77
>gi|71664710|ref|XP_819333.1| DNA repair and transcription factor protein [Trypanosoma cruzi
strain CL Brener]
gi|70884629|gb|EAN97482.1| DNA repair and transcription factor protein, putative [Trypanosoma
cruzi]
Length = 356
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 88/363 (24%), Positives = 156/363 (42%), Gaps = 59/363 (16%)
Query: 91 IVIDLSRAA-AEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
+++D S A + D+ P+R+ + Q+ FV + D NPL+ +G+VT++DGVA+ L
Sbjct: 6 LLLDGSEAMNSSADYLPTRLLALRPQLGRFVHAYLDANPLASLGVVTMRDGVAHRLNSCT 65
Query: 150 GSPESHIKALMGK---LGCSGDSSLQNALDLVQGLLSQI-----------PSYGHRE--- 192
+ I+ L K G SG SL+N L L + P G +E
Sbjct: 66 TNASDIIQTLEVKYFLFGGSGAMSLENGLRFALSELVDMKRIAKRVRRTEPHAGGKEARE 125
Query: 193 -------VLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSY 245
+L++ S+++ DP D+ I+ + ++R VI + + TGG+
Sbjct: 126 EPTARLRILLVSSSVTVIDPHDVFGVIKMMAKLRVRVDVISFCGAVHVFGEAAVSTGGTL 185
Query: 246 SVALDESHFKELI-MEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVG 304
++ H E++ + +P + + +I++GFP +C KE + G G
Sbjct: 186 YTPMNYDHLTEVLGLLASPDKHHVCQEERPAMIRIGFPVYI--------NC-KEPEGGEG 236
Query: 305 -----YTCPRCKARVCELPTDCRICGLQLVSSPHLARSY---HHLFPIAP--------FD 348
CP+C +P+ C +C L L S+P + ++ + L P++ D
Sbjct: 237 GSTNYVACPQCALVQTSIPSTCPLCKLLLCSAPLIHNTFIAHNELCPVSENVVDAFEGTD 296
Query: 349 EVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNC 408
+ T LN+ C CQ ++ + L C C C+ C+ Y+ E + C
Sbjct: 297 KPTEDYLNE-------RCSLCQYGMMGEDGR-ALVWRCNSCHCLRCVSCEKYVRERIGLC 348
Query: 409 PGC 411
P C
Sbjct: 349 PTC 351
>gi|149059194|gb|EDM10201.1| general transcription factor II H, polypeptide 2 (predicted),
isoform CRA_c [Rattus norvegicus]
Length = 159
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 72/121 (59%), Gaps = 8/121 (6%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ +R + +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKR------VFEHHGQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSD 122
Query: 151 S 151
+
Sbjct: 123 T 123
>gi|407843613|gb|EKG01508.1| DNA repair and transcription factor protein [Trypanosoma cruzi]
Length = 397
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 88/366 (24%), Positives = 151/366 (41%), Gaps = 65/366 (17%)
Query: 91 IVIDLSRAA-AEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
+++D S A + D+ P+R+ + Q+ FV + D NPL+ +G+VT++DGVA+ L
Sbjct: 47 LLLDGSEAMNSSADYLPTRLLALRPQLGRFVHAYLDANPLASLGVVTMRDGVAHRLNSCT 106
Query: 150 GSPESHIKALMGK---LGCSGDSSLQNALDLVQGLLSQI-----------PSYGHRE--- 192
+ I+ L K G SG SL+N L L + P G +E
Sbjct: 107 TNASDIIQTLEVKYFLFGGSGAMSLENGLRFALSELVDMKRIAKRVRRTEPRAGGKEARE 166
Query: 193 -------VLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSY 245
+L++ S+++ DP D+ I+ + +R VI + + TGG+
Sbjct: 167 EPTARLRILLVSSSVTVIDPHDVFGVIKMMAKLHVRVDVISFCGAVHVFGEAAVSTGGTL 226
Query: 246 SVALDESHFKELIMEHAPPPPA-IAEFAIANLIKMGFP-------QRAGEGSISICSCHK 297
++ H E++ A P + + +I++GFP GEG
Sbjct: 227 YTPMNYDHLTEVLGRLASPDKRHVCQEERPAMIRIGFPVYIDCKEPEGGEGG-------- 278
Query: 298 EVKVGVGYT-CPRCKARVCELPTDCRICGLQLVSSPHLARSY---HHLFPIAP------- 346
Y CP+C +P+ C +C L L S+P + ++ + L P++
Sbjct: 279 ----STNYVACPQCALVQTSIPSTCPLCKLLLCSAPLIHNTFIAHNELCPVSENVVDAFE 334
Query: 347 -FDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESL 405
D+ T LN+ C CQ ++ + L C C C+ C+ Y+ E +
Sbjct: 335 GADKPTEDYLNE-------RCSLCQYGMMGEDGR-ALVWRCNSCHCLRCVSCEKYVRERI 386
Query: 406 HNCPGC 411
CP C
Sbjct: 387 GLCPTC 392
>gi|148668488|gb|EDL00807.1| general transcription factor II H, polypeptide 2, isoform CRA_b
[Mus musculus]
Length = 159
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 72/121 (59%), Gaps = 8/121 (6%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDE+G L+ + A+ +R + +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDETGSLKATIEDILFKAKRKR------VFEHHGQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSD 122
Query: 151 S 151
+
Sbjct: 123 T 123
>gi|342182931|emb|CCC92411.1| putative DNA repair and transcription factor protein [Trypanosoma
congolense IL3000]
Length = 354
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 86/357 (24%), Positives = 147/357 (41%), Gaps = 48/357 (13%)
Query: 91 IVIDLSRAA-AEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
+++D S A + D+ P+R+ + Q+ AFV F D NPL+ +G+V ++DGVA+ L
Sbjct: 6 LLLDGSEAVNSSSDYLPTRLLALRPQLNAFVHAFLDDNPLASLGVVVMRDGVAHRLISCT 65
Query: 150 GSPESHIKALMGK---LGCSGDSSLQNALDLVQGLLSQIPSYGHR--------------- 191
+ AL K G SG SL+N L + L + R
Sbjct: 66 ANATDIAHALELKYFLFGGSGAMSLENGLRMALSELVDLKRIAKRVRREAEMPGPNEEGL 125
Query: 192 --------EVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGG 243
V+++ S+++ DP D+ + + ++R V+ + + TGG
Sbjct: 126 RPDHATQLRVILVASSVTLVDPHDVFRVQKVVAQLRVRVDVVSFCGAVHALQEAALTTGG 185
Query: 244 SYSVALDESHFKELIMEHAPPPPAIAEFAIAN--LIKMGFPQRA-GEGSISICSCHKEVK 300
++ H ++ + A P +I++GFP+ EG KE +
Sbjct: 186 QLYTPMNYEHLTGILQKLAAPERGSTHPLTERPAMIQIGFPRYVEAEG--------KEKR 237
Query: 301 VGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSY-HHLFPIAPFDEV-----TPLC 354
CP+C +P+ C +C L L S+P + S+ PIAP +V P
Sbjct: 238 Y---MGCPQCGLIQTSVPSTCPLCKLLLCSAPLIHTSFITKNEPIAPSQKVESKQKAPSG 294
Query: 355 LNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
+D S C++ L G+ ++ C C + C C+ Y+ E + CP C
Sbjct: 295 ESD-EAPSVHCSLCCRRKPLGVGDGGMVFWRCSCCLRERCDVCEAYVKEGIGLCPTC 350
>gi|56753383|gb|AAW24895.1| SJCHGC07056 protein [Schistosoma japonicum]
Length = 150
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 71/134 (52%), Gaps = 28/134 (20%)
Query: 305 YTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVT------PLCLNDP 358
Y CPRC A CELP +C +CGL LV++PHLAR+YHHLFP+ F+ V +N+
Sbjct: 19 YACPRCHAAYCELPVECNVCGLTLVAAPHLARAYHHLFPLDLFEPVVDNNSSEKSLVNED 78
Query: 359 RNRSR------------------STCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIY 400
+++ C GC +++ PG CPKC FC CD
Sbjct: 79 KSKETINSSSDDNNNNNNNNNQLRVCTGC--NVIIPSRIPGY--QCPKCTFIFCHSCDAI 134
Query: 401 IHESLHNCPGCESL 414
+H+S+H+CPGC +L
Sbjct: 135 LHDSIHSCPGCLTL 148
>gi|413921934|gb|AFW61866.1| hypothetical protein ZEAMMB73_690183 [Zea mays]
Length = 266
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 57/86 (66%), Gaps = 5/86 (5%)
Query: 2 TNSERKRLNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFY 61
T + R+R G+ EE+ DE L EAWER+YAD+RSWE+LQEDESG LRP+D
Sbjct: 96 TAASRRRNPGDEEEDVGDEGRVL----EAWERAYADERSWESLQEDESGLLRPVDTKTLV 151
Query: 62 HAQYRRRLRDRSLVATTARIQKGLIR 87
HA+YR L RS A ARIQKGL R
Sbjct: 152 HARYRWCLLLRS-TAAAARIQKGLFR 176
>gi|72393367|ref|XP_847484.1| DNA repair and transcription factor protein [Trypanosoma brucei
TREU927]
gi|62359582|gb|AAX80015.1| DNA repair and transcription factor protein, putative [Trypanosoma
brucei]
gi|70803514|gb|AAZ13418.1| DNA repair and transcription factor protein, putative [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
Length = 351
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 109/263 (41%), Gaps = 36/263 (13%)
Query: 102 MDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMG 161
+D+ P+R+ + Q+ FV + D NPL+ +G+V ++DGVA L + ++ L
Sbjct: 18 LDYLPTRLIALRPQLNKFVHTYLDANPLASLGVVVMRDGVAQRLIPCTTNATDIVQTLEL 77
Query: 162 K---LGCSGDSSLQNALDLVQGLLSQIPSYGHR---------------------EVLILY 197
K G SG SL+N L + L + R +++
Sbjct: 78 KYFRFGGSGAMSLENGLRMALSELVDLRRIAKRLRENNSGSTGSDVQEDVTSRLRIVLAS 137
Query: 198 SALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKEL 257
S+++ DP D+ + + ++R VI + + + TGGS ++ H E+
Sbjct: 138 SSVTIVDPLDVFAVQKIVAQLRVRVDVISFCGAVHVLQEAAVLTGGSLHTPMNYEHLTEI 197
Query: 258 IMEHAPPPPAIAEFAIAN--LIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVC 315
+ A P A LI++GFP G+ E + TCP+C
Sbjct: 198 LRHLASPEGGSARHVDVQPALIQIGFPMYVGD----------EAEGKRYLTCPQCGLIQT 247
Query: 316 ELPTDCRICGLQLVSSPHLARSY 338
+P+ C +C L L S P + ++
Sbjct: 248 SIPSTCSLCKLLLFSVPLIHVTF 270
>gi|312076198|ref|XP_003140754.1| hypothetical protein LOAG_05169 [Loa loa]
Length = 127
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 70/122 (57%), Gaps = 6/122 (4%)
Query: 30 AWERSYADDRSW-EALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRY 88
WE YAD + + L EDESG + + ++RL +R A+++ G++RY
Sbjct: 11 TWEVDYADGLNIRDVLHEDESGSIEKSVAKLILDTKRKKRLNNRP-----AKVRLGIMRY 65
Query: 89 LYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL 148
LY+VID S + A+ PSR+AV K + F+ +F +QNP+SQ+G+V KD A CL L
Sbjct: 66 LYLVIDCSFSMADKSIPPSRLAVTIKALNQFLDKFSEQNPISQVGIVVCKDKRAECLIPL 125
Query: 149 GG 150
G
Sbjct: 126 TG 127
>gi|261330741|emb|CBH13726.1| DNA repair and transcription factor protein,putative [Trypanosoma
brucei gambiense DAL972]
Length = 351
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 115/275 (41%), Gaps = 37/275 (13%)
Query: 91 IVIDLSRAA-AEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
+++D S A +D+ P+R+ + Q+ FV + D NPL+ +G+V ++DGVA L
Sbjct: 6 LLLDGSEAVNCSLDYLPTRLIALRPQLNKFVHTYLDANPLASLGVVVMRDGVAQRLIPCT 65
Query: 150 GSPESHIKALMGK---LGCSGDSSLQNALDLVQGLLSQIPSYGHR--------------- 191
+ ++ L K G SG SL+N L + L + R
Sbjct: 66 TNATDIVQTLELKYFRFGGSGAMSLENGLRMALSELVDLRRIAKRLRENNSGSTGSDVQE 125
Query: 192 ------EVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSY 245
+++ S+++ DP D+ + + ++R VI + + + TGGS
Sbjct: 126 DVTSRLRIVLASSSVTIVDPLDVFAVQKIVAQLRVRVDVISFCGAVHVLQEAAVLTGGSL 185
Query: 246 SVALDESHFKELIMEHAPPPPAIAEFAIAN--LIKMGFPQRAGEGSISICSCHKEVKVGV 303
++ H E++ A P A LI++GFP G+ E +
Sbjct: 186 HTPMNYEHLTEILRHLASPEGGSARHVGVQPALIQIGFPMYVGD----------EAEGKR 235
Query: 304 GYTCPRCKARVCELPTDCRICGLQLVSSPHLARSY 338
TCP+C +P+ C +C L L S P + ++
Sbjct: 236 YLTCPQCGLIQTSIPSTCPLCKLLLFSVPLIHVTF 270
>gi|340055688|emb|CCC50009.1| putative DNA repair and transcription factor protein, fragment
[Trypanosoma vivax Y486]
Length = 355
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 110/262 (41%), Gaps = 39/262 (14%)
Query: 103 DFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGK 162
D+ P+R+ + Q+ AFV +FD+NPL+ +G+V ++DGVA+ + + ++AL K
Sbjct: 19 DYLPTRLLALRPQLHAFVHTYFDENPLAALGVVVMRDGVAHRICSCTTNATDILQALEVK 78
Query: 163 ---LGCSGDSSLQNALDLVQGLLSQIPSYGHR---------------------------E 192
G SG SL+N L L L ++ R
Sbjct: 79 YFLFGGSGAMSLENGLRLALSELVELKRIAKRLRQDGVDTGNGSNGSRGPTLEQPSARLR 138
Query: 193 VLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDES 252
++++ S+++ DP D+ + ++R VI S + + TGG L
Sbjct: 139 IVVISSSVTLVDPHDVFAVQRLVARLRVRVDVISFSGAVHALEEAAAVTGGMLHTPLGYD 198
Query: 253 HFKELIMEHAPPPPAIA--EFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRC 310
H ++ A P A E + +I++GFP + + S EV+ CP+C
Sbjct: 199 HLTTILRRLAAPDKMAARREGEKSPMIRIGFP-------LHMESAEAEVERRRFIACPQC 251
Query: 311 KARVCELPTDCRICGLQLVSSP 332
P+ C +C L + S P
Sbjct: 252 GLVQTATPSTCHLCKLLICSVP 273
>gi|294930956|ref|XP_002779725.1| btf, putative [Perkinsus marinus ATCC 50983]
gi|239889260|gb|EER11520.1| btf, putative [Perkinsus marinus ATCC 50983]
Length = 200
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 93/173 (53%), Gaps = 15/173 (8%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAF---YHAQYRRRL-----RDRSLV-ATTAR 80
AWE Y +SW + +D+ G L D ++ Y Y L D LV +
Sbjct: 28 AWEADYT--KSWINITKDQHGKLVVRDEASIARKYPRNYDGVLPVSAGEDGELVHKQSMA 85
Query: 81 IQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQV-EAFVREFFDQNPLSQIGLVTVKD 139
+++GL+R+LY+V+D+S A MD++ +R+ V + F+ ++FD NP+S + ++ ++D
Sbjct: 86 LKRGLLRFLYLVVDMSSAMQNMDYKQNRLDFVVSHLCRNFIPQYFDLNPISNLSVLALRD 145
Query: 140 GVANCLTDLGGSPESHIKALM--GKLGCSGDSSLQNALDLV-QGLLSQIPSYG 189
A+ +T + G P S ++ ++ G SG +SL NAL+ V Q +P YG
Sbjct: 146 QRAHFVTRMSGQPASQMERVLQFSTGGASGSASLVNALEAVGQAAKGSLPRYG 198
>gi|147832400|emb|CAN64423.1| hypothetical protein VITISV_032275 [Vitis vinifera]
Length = 578
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/41 (78%), Positives = 38/41 (92%)
Query: 121 REFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMG 161
+EFFDQ+P SQIGLVT+KDG+A CLTDLGGSP+SH+KALM
Sbjct: 199 KEFFDQDPFSQIGLVTIKDGLAQCLTDLGGSPDSHVKALMA 239
>gi|324562745|gb|ADY49854.1| General transcription factor IIH subunit 2, partial [Ascaris suum]
Length = 85
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 279 MGFPQRAGEGSISICSCHK---EVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLA 335
MGFP + C CH+ G G+ CP+C AR C LP +CR+C L L+S+P LA
Sbjct: 1 MGFPSHQIIQKPAFCLCHQSENRPPGGRGFLCPQCGARYCSLPVECRVCKLMLISAPQLA 60
Query: 336 RSYHHLFPIAPFDEVTPLCLN 356
RS+HHL P+ F EV C+
Sbjct: 61 RSFHHLLPLPAFKEVIDYCVK 81
>gi|431907809|gb|ELK11416.1| Baculoviral IAP repeat-containing protein 1 [Pteropus alecto]
Length = 1274
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 5/81 (6%)
Query: 85 LIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 144
+R+LY+VID SR + D +P+R+ K +E F+ E+FDQNP+SQIG++ K A
Sbjct: 15 FMRHLYVVIDGSRTMEDQDLKPNRLTCTLKLLEYFIEEYFDQNPISQIGIIVTKSKRAEK 74
Query: 145 LTDLGGS-----PESHIKALM 160
LT+L G+ ESH K L+
Sbjct: 75 LTELSGTYHVILDESHYKELL 95
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 56/97 (57%), Gaps = 12/97 (12%)
Query: 240 DTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRA--------GEGSIS 291
+ G+Y V LDESH+KEL+ H PPPA + +LI+MGFPQ + S S
Sbjct: 77 ELSGTYHVILDESHYKELLTHHVSPPPASSSSE-CSLIRMGFPQHTIASLSDQDAKPSFS 135
Query: 292 ICSCHKEVKVGV---GYTCPRCKARVCELPTDCRICG 325
+ + G+ GY CP+C+A+ CELP +C+ICG
Sbjct: 136 MAHLDSNTEPGLTLGGYFCPQCRAKYCELPVECKICG 172
>gi|432104566|gb|ELK31178.1| Baculoviral IAP repeat-containing protein 1 [Myotis davidii]
Length = 1414
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 51/80 (63%), Gaps = 5/80 (6%)
Query: 86 IRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 145
+R+LY+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A L
Sbjct: 77 MRHLYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKL 136
Query: 146 TDLGGS-----PESHIKALM 160
T+L G+ ESH K L+
Sbjct: 137 TELSGTYHVILDESHYKELL 156
>gi|123446514|ref|XP_001312007.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121893838|gb|EAX99077.1| hypothetical protein TVAG_290240 [Trichomonas vaginalis G3]
Length = 166
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 77/136 (56%), Gaps = 13/136 (9%)
Query: 109 MAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCS 166
M ++ Q F+ +FF QNPLSQ+ ++ + LT L + + H+K + +
Sbjct: 1 MKLIQDQTIDFINDFFVQNPLSQLSILATYESTCRILTPLSCNVQDHVKKIKSLSLEDHG 60
Query: 167 GDSSLQNALDLVQGLL---------SQIPSYGHREVLILYSALSTCDPGDIMETIQKCKE 217
G+ SL+++L + +L +QI + +EVLI+Y +L+TCD I +T+ ++
Sbjct: 61 GEPSLESSLSIATAILGNGEKNPGLAQIST--TKEVLIVYGSLTTCDNSPIYKTLNLVRD 118
Query: 218 SKIRCSVIGLSAEMFI 233
SKI+ S+IGL A++F+
Sbjct: 119 SKIKVSIIGLGAKVFV 134
>gi|156341095|ref|XP_001620650.1| hypothetical protein NEMVEDRAFT_v1g147480 [Nematostella vectensis]
gi|156205835|gb|EDO28550.1| predicted protein [Nematostella vectensis]
Length = 93
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 62/93 (66%), Gaps = 6/93 (6%)
Query: 42 EALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAE 101
EA++ED+ G L+ + + + ++ +R + A ++ G++R+LYI+ID+S+A E
Sbjct: 1 EAIREDDEGSLQTLVDELVHRSKRQR------VAARPGNVRLGMMRHLYIIIDMSKAMEE 54
Query: 102 MDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGL 134
D +P+R++ AK +E F+ E+FDQNP+SQ+ +
Sbjct: 55 ADLKPNRLSCSAKLLENFITEYFDQNPISQVRI 87
>gi|238503359|ref|XP_002382913.1| RNA polymerase TFIIH complex subunit Ssl1, putative [Aspergillus
flavus NRRL3357]
gi|220691723|gb|EED48071.1| RNA polymerase TFIIH complex subunit Ssl1, putative [Aspergillus
flavus NRRL3357]
Length = 87
Score = 71.2 bits (173), Expect = 9e-10, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 54/84 (64%), Gaps = 2/84 (2%)
Query: 101 EMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL- 159
E D RP+R + + + VREFF+QNP+SQ+G++ ++DG+A ++DL G+P HI A+
Sbjct: 3 EKDLRPTRYLLTLRYAQELVREFFEQNPISQLGVLGLRDGLAIRISDLSGNPTEHISAIQ 62
Query: 160 -MGKLGCSGDSSLQNALDLVQGLL 182
+ G SLQN +++ +G L
Sbjct: 63 TLRDQDPKGLPSLQNGIEMARGAL 86
>gi|222838932|gb|EEE77283.1| predicted protein [Populus trichocarpa]
Length = 72
Score = 70.9 bits (172), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 44/65 (67%)
Query: 86 IRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 145
+R+LY+V+D SR + D +P+R+ K +E FV E+FDQNP+SQIG++ K A L
Sbjct: 1 MRHLYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKL 60
Query: 146 TDLGG 150
T+L G
Sbjct: 61 TELSG 65
>gi|241165648|ref|XP_002409694.1| Bcl-2-associated transcription factor (BTF), putative [Ixodes
scapularis]
gi|215494619|gb|EEC04260.1| Bcl-2-associated transcription factor (BTF), putative [Ixodes
scapularis]
Length = 123
Score = 70.5 bits (171), Expect = 1e-09, Method: Composition-based stats.
Identities = 37/83 (44%), Positives = 56/83 (67%), Gaps = 4/83 (4%)
Query: 212 IQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEF 271
+QKC IRCSV+GL+AE+ +C L + TGG+Y+V +DE+HFKE++ +HA PPP
Sbjct: 1 MQKCS---IRCSVVGLAAEVRVCCALTKATGGTYNVIMDENHFKEILFQHAIPPPVTGN- 56
Query: 272 AIANLIKMGFPQRAGEGSISICS 294
+ ++LI+M A S++I S
Sbjct: 57 SESSLIRMVHVSPACPPSLTIMS 79
>gi|321452740|gb|EFX64060.1| hypothetical protein DAPPUDRAFT_267127 [Daphnia pulex]
Length = 135
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 59/100 (59%), Gaps = 11/100 (11%)
Query: 160 MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESK 219
M C+G++SLQN+ + L +P++ RE+L L L I+ KE+
Sbjct: 39 MKDTSCNGETSLQNSFERAMCGLKNMPAHSSREMLTLLVIL-----------IKSFKENN 87
Query: 220 IRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIM 259
IR S+IGL+AE+ IC+ + + TGG+Y+V LD+ + KE ++
Sbjct: 88 IRVSIIGLAAEVRICQEIAKRTGGTYNVLLDDHYLKETLI 127
>gi|253742551|gb|EES99376.1| TFIIH P44 [Giardia intestinalis ATCC 50581]
Length = 393
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 76/356 (21%), Positives = 137/356 (38%), Gaps = 37/356 (10%)
Query: 82 QKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGV 141
Q G+ R++ ++ID S + + ++ + +V+ PL ++ +T+++ +
Sbjct: 46 QVGIFRHVVLIIDSSES-----LPLTYLSEFINSLFLYVQFILSHRPLIRVAFMTLQNSL 100
Query: 142 ANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGH-REVLILYSAL 200
+ + + L SG +L LD LL S R +L + +
Sbjct: 101 CYLELRFSSNLSAFEEVLRDGFRPSGHIALATGLDQAYELLMNSKSAASSRRILYINFSS 160
Query: 201 STCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESH------- 253
+T D DI ++K ++++ + L+ + H+ + TGG + + E+
Sbjct: 161 ATIDSLDIFNVLEKLLSAQVQVDTVSLTNSFGVLDHISRKTGGRHLIIDRETKGGLLNLL 220
Query: 254 -----FKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCP 308
E + + I +GFP + +I C CH G Y CP
Sbjct: 221 KRLELRSEDVRITQATEEGDSNVDEGKFIMVGFPVHICDDAI--CFCHNRHGTGF-YECP 277
Query: 309 RCKARVCELPTDCRICGLQLVSSPHLARS---YHHLFPIAPFDE--VTPLCLNDPRN--- 360
C A VC++ ++C CGLQLV P+L R + D V P N
Sbjct: 278 FCYAVVCDI-SECVCCGLQLVMYPNLYRGALLHKRALSFTKSDSSLVQPEAATSSANQAE 336
Query: 361 -----RSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
+++S C CQ + ++ C C FC C + E+ +CP C
Sbjct: 337 DSKHIKAKSVCSLCQMQYGTDTDRSQYL--CSFCSGPFCKSCSELLAEAKVSCPVC 390
>gi|119498681|ref|XP_001266098.1| transcription factor and DNA repair complex, core TFIIH, putative
[Neosartorya fischeri NRRL 181]
gi|119414262|gb|EAW24201.1| transcription factor and DNA repair complex, core TFIIH, putative
[Neosartorya fischeri NRRL 181]
Length = 157
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 53/80 (66%), Gaps = 2/80 (2%)
Query: 105 RPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGK 162
RP+R + + + FVREFF+QNP+SQ+G++ ++DG+A ++D+ G+P HI A+ +
Sbjct: 77 RPTRYLLSLRYAQEFVREFFEQNPISQLGVLGLRDGLAIRVSDMSGNPTEHISAIQALRD 136
Query: 163 LGCSGDSSLQNALDLVQGLL 182
G SLQN L++ +G L
Sbjct: 137 HDPKGLPSLQNGLEMARGAL 156
>gi|169806142|ref|XP_001827816.1| transcription-repair factor TFIIH subunit [Enterocytozoon bieneusi
H348]
gi|161779264|gb|EDQ31287.1| transcription-repair factor TFIIH subunit [Enterocytozoon bieneusi
H348]
Length = 187
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 86/183 (46%), Gaps = 15/183 (8%)
Query: 229 AEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEG 288
E+ + K +C TGG Y V ++ FK ++ + ++ +LI++ FP+
Sbjct: 18 GEVTLLKKVCISTGGKYVVLINSFQFKSILSDFLYLLESLD--LKCSLIEVEFPKNIYTQ 75
Query: 289 SISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFD 348
+ C+CH + V + CP+CK VC +P C IC L+L+SS + + + + F
Sbjct: 76 HL--CACHLNL-CSVLFECPKCKGFVCTIPFTCPICKLELISSTDIRDLICYNYYLESFV 132
Query: 349 EVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNC 408
++ + + ++ C+GC++ + S C KC FC CD +H ++ C
Sbjct: 133 KIVT--SKELSSLEKNKCYGCEKLEVIS--------VCNKCLSPFCYNCDAKLHNVINFC 182
Query: 409 PGC 411
C
Sbjct: 183 SFC 185
>gi|159115826|ref|XP_001708135.1| TFIIH P44 [Giardia lamblia ATCC 50803]
gi|157436245|gb|EDO80461.1| TFIIH P44 [Giardia lamblia ATCC 50803]
Length = 406
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 65/291 (22%), Positives = 118/291 (40%), Gaps = 41/291 (14%)
Query: 75 VATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGL 134
+A + + Q G+ R++ ++ID S + + ++ + +V+ PL ++
Sbjct: 39 LAPSQQSQVGIFRHVVLIIDSSES-----LPLTYLSEFVNSLFLYVQFILSHRPLIRVAF 93
Query: 135 VTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGH-REV 193
+T+++ + + + + L SG +L LD LL S R +
Sbjct: 94 MTLQNSLCYLELRFSSNLSAFEEVLRDGFRPSGHIALATGLDQAYELLMNNKSAASSRRI 153
Query: 194 LILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVA----- 248
L + + +T D DI ++K ++I+ ++ L+ + H+ + TGG + +
Sbjct: 154 LYVNFSNATLDSLDIFSVLEKLLAAQIQVDIVSLTNRFGVLDHISRVTGGRHLIVDRDVK 213
Query: 249 ------------------LDESHFKELIMEH-----APPPPAIAEFAIANLIKMGFPQRA 285
L S +E EH A + I +GFP
Sbjct: 214 GGLLNLLKRLELRSEDTRLMHSKGRE---EHSLNLQASHNQTATDTEGGKFIMVGFPVHI 270
Query: 286 GEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLAR 336
+ +I C CH G Y CP C A VC++ ++C CGLQLV P+L R
Sbjct: 271 CDDAI--CFCHNRHGTGF-YECPFCYAVVCDI-SECVCCGLQLVMYPNLYR 317
>gi|308162603|gb|EFO64989.1| TFIIH P44 [Giardia lamblia P15]
Length = 416
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 62/291 (21%), Positives = 113/291 (38%), Gaps = 45/291 (15%)
Query: 82 QKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGV 141
Q G+ ++ ++ID S + + ++ + +V+ PL ++ +T+++ +
Sbjct: 46 QVGIFHHVVLIIDSSES-----LPLTYLSEFVNSLFLYVQFILSHRPLIRVAFMTLQNSL 100
Query: 142 ANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGH-REVLILYSAL 200
+ + + L SG +L LD LL S R +L + +
Sbjct: 101 CYLELRFSSNLSAFEEVLRDGFRPSGHIALATGLDQAYDLLMNSGSAASSRRILYINFSN 160
Query: 201 STCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSY--------------- 245
+T D DI ++K ++I+ V+ L+ + H+ + TGG +
Sbjct: 161 ATLDSLDIFSVLEKLFAAQIQVDVVSLTNSFGVLDHISRTTGGRHLIVDREIKGGLLNLL 220
Query: 246 -------------------SVALDESHFKELIMEHAPPPPAIAEFAI-ANLIKMGFPQRA 285
++ L SH + + +A I +GFP
Sbjct: 221 KRLELRSEDAKIMQSKGEGTLNLQMSHNQIITDAKCTKDTVLASNTEEGKFIMVGFPVHI 280
Query: 286 GEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLAR 336
+ +I C CH G Y CP C A VC++ ++C CGLQLV P+L R
Sbjct: 281 CDDAI--CFCHNRHGTGF-YECPFCYAIVCDI-SECVCCGLQLVMYPNLYR 327
>gi|426384460|ref|XP_004058783.1| PREDICTED: general transcription factor IIH subunit 2-like [Gorilla
gorilla gorilla]
Length = 106
Score = 57.4 bits (137), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 8/90 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFV 120
+V+D SR + D +P+R+ K F+
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLKVKFKFI 92
>gi|444513341|gb|ELV10306.1| General transcription factor IIH subunit 2 [Tupaia chinensis]
Length = 87
Score = 57.0 bits (136), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 8/84 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ + A+ +R +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHH------GQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAK 114
+V+D SR + D +P+R+ K
Sbjct: 63 VVVDGSRTMEDQDLKPNRLTCTLK 86
>gi|321454255|gb|EFX65433.1| hypothetical protein DAPPUDRAFT_264704 [Daphnia pulex]
Length = 72
Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 16/85 (18%)
Query: 185 IPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS 244
+P++ RE+L L L E+ IR S+IGL+AE+ IC+ + + TGG+
Sbjct: 1 MPAHSSREMLTLLVIL----------------ENNIRVSIIGLAAEVRICQEIAKRTGGT 44
Query: 245 YSVALDESHFKELIMEHAPPPPAIA 269
Y+V LD+ + KE ++ + P A+A
Sbjct: 45 YNVLLDDHYLKETLILNQVQPLAVA 69
>gi|399949974|gb|AFP65630.1| hypothetical protein CMESO_485 [Chroomonas mesostigmatica CCMP1168]
Length = 334
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 17/175 (9%)
Query: 112 VAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDS 169
+ K V + F NP Q+ ++ VK+ ++ L G+ + H + L + K G++
Sbjct: 28 IFKLVSKLIHYFLYSNPSYQLAIILVKNNSIEQISHLSGNKKHHNQGLYRIKKKQDLGEN 87
Query: 170 SLQNALDLVQGLLSQIPSYGHREVLIL----YSALSTCDPGDIMETIQKCKESKIRCSVI 225
SL+ A L + LLS +E++I Y + G ++KI+ SVI
Sbjct: 88 SLKTAFFLAKKLLSFNKKKSEQEIIIFMGGSYVSSVFHSFGSFFV------KNKIKFSVI 141
Query: 226 GLSAEMFICKHLCQDTGGSYSVALDESHF-----KELIMEHAPPPPAIAEFAIAN 275
+ F+ + L + TGG Y V +S+F L M P FAI N
Sbjct: 142 MFYEKTFLFETLVKITGGFYIVLKKDSNFDLISCMRLNMFRKTQIPKKVYFAIGN 196
>gi|496307|gb|AAA35101.1| stem loop mutation suppressor, partial [Saccharomyces cerevisiae]
Length = 62
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 6/54 (11%)
Query: 366 CFGCQQSL-LSSGNKPGLYVA-----CPKCKKHFCLECDIYIHESLHNCPGCES 413
CF CQ + +K G + C CK+ FC++CD++IHE LHNCPGCES
Sbjct: 4 CFSCQSRFPILKNHKNGKLLTSSRYRCEDCKQEFCVDCDVFIHEILHNCPGCES 57
>gi|337743327|gb|AEI73160.1| GTF2E2 [Kryptolebias marmoratus]
Length = 74
Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKGLIRYLY 90
WE Y +R+WE L+EDESG L+ Y ++ +R + + +++ G++R+LY
Sbjct: 11 WEGGY--ERTWEVLKEDESGSLKATVEEILYQSKRKR------VTESHGQVRLGMMRHLY 62
Query: 91 IVIDLSRAAAE 101
+VID SR+ E
Sbjct: 63 VVIDGSRSMEE 73
>gi|157870269|ref|XP_001683685.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68126751|emb|CAJ05184.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 446
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/188 (20%), Positives = 78/188 (41%), Gaps = 30/188 (15%)
Query: 103 DFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGK 162
D+ P+ + + + FV + D PL+ +G+V ++DG+++ L + + L
Sbjct: 19 DYLPNYLLAMRPPLLRFVERYLDSTPLASLGVVVMRDGISHRLLPCTTNRNEIVDVLERD 78
Query: 163 L---GCSGDSSLQNALDLVQGLL-----------------SQIPSYGHR----------E 192
+ G SG++S++N L + L S + + R
Sbjct: 79 VFLHGGSGNTSMENGLRMAMSELVDMREVAALAAATAKKSSSVAARNPRAAWKGSATQLN 138
Query: 193 VLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDES 252
V++L ++++ DP D+ + IR SV+ L + + +TGG+ L+
Sbjct: 139 VIVLTASVTLIDPTDVFAVVNIMAVLSIRISVVSLVGAVHVFDVCTVETGGTLYCPLNYD 198
Query: 253 HFKELIME 260
H ++ E
Sbjct: 199 HLLHIMDE 206
>gi|66361323|pdb|1Z60|A Chain A, Solution Structure Of The Carboxy-Terminal Domain Of Human
Tfiih P44 Subunit
Length = 59
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 5/46 (10%)
Query: 366 CFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
C+GCQ L +YV C C+ FC++CD+++H+SLH+CPGC
Sbjct: 18 CYGCQGEL----KDQHVYV-CAVCQNVFCVDCDVFVHDSLHSCPGC 58
>gi|307354884|ref|YP_003895935.1| hypothetical protein Mpet_2754 [Methanoplanus petrolearius DSM
11571]
gi|307158117|gb|ADN37497.1| conserved hypothetical protein [Methanoplanus petrolearius DSM
11571]
Length = 316
Score = 45.1 bits (105), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 28/188 (14%)
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+VID S + D+ P+R+ E + D +P +G+V + G A+ + L
Sbjct: 92 LVIDDSGSMQATDYSPNRLEATKSAAEELIN---DLDPKDYVGIVVFESG-ASTASYLSP 147
Query: 151 SPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIM- 209
+S I+ L + G +++ + L L + IP+ ++V+IL S + G I
Sbjct: 148 DKDSVIENLENIMEKDGATAIGDGLSLGINMADSIPN--RKKVVILLSD-GVNNAGVISP 204
Query: 210 -ETIQKCKESKIRCSVIGLSAEMFIC-------------------KHLCQDTGGSYSVAL 249
E IQ K+S I+ IG+ +E + K + +TGG Y ++
Sbjct: 205 DEAIQFAKDSDIQVFTIGMGSEQPVVMGYDWFGNPQYAELDEATLKEIADETGGKYFKSV 264
Query: 250 DESHFKEL 257
D+ E+
Sbjct: 265 DDQTLNEI 272
>gi|392579844|gb|EIW72971.1| hypothetical protein TREMEDRAFT_70875 [Tremella mesenterica DSM
1558]
Length = 343
Score = 45.1 bits (105), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 8/145 (5%)
Query: 90 YIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
+V+D S D+ P+R A+ V D NP S +GL+T+ + L
Sbjct: 7 MLVLDNSEYMRNGDYPPTRFQAQAQAVSTVFTAKTDSNPESAVGLMTMAGKSPSLLV--- 63
Query: 150 GSPESHIKAL---MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPG 206
+P + I L MGK GDS A+ + Q L + R+ +I++ DP
Sbjct: 64 -TPTNDIGKLLSAMGKASIGGDSDFSTAVQIAQLALKHRENKNQRQRVIVFVGSPVSDPQ 122
Query: 207 DIMETI-QKCKESKIRCSVIGLSAE 230
+ + + +K +++ + V+ E
Sbjct: 123 EALVKLGKKLRKNNVLVDVVTFGEE 147
>gi|736405|gb|AAA64503.1| BTF2p44 [Homo sapiens]
Length = 69
Score = 44.7 bits (104), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 10/69 (14%)
Query: 343 PIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIH 402
P+ F E+ PL + N R C+GCQ L +YV C C+ FC++CD+++H
Sbjct: 1 PLDAFQEI-PL---EEYNGER-FCYGCQGELKDQH----VYV-CAXCQNVFCVDCDVFVH 50
Query: 403 ESLHNCPGC 411
+SLH CPGC
Sbjct: 51 DSLHCCPGC 59
>gi|407926572|gb|EKG19539.1| Transcription factor Tfb4 [Macrophomina phaseolina MS6]
Length = 380
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 54/132 (40%), Gaps = 12/132 (9%)
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVAL-DESHFKELIMEHAPPPP 266
+M I + +I ++ L+ + + C TGG Y L E + L+M P
Sbjct: 218 VMNAIFAAQRQRIPIDILKLAGDTVFLQQACDATGGIYLKPLAPEGLLQYLMMAFLPDET 277
Query: 267 AIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTD--CRIC 324
A + + ++ F RA C CH+ V V +GY C C + CE P D C C
Sbjct: 278 ARKHLVLPSAGEVDF--RAA------CFCHRRV-VDIGYVCSVCLSIFCEPPADQTCPTC 328
Query: 325 GLQLVSSPHLAR 336
L S + R
Sbjct: 329 TNPLSVSSSITR 340
>gi|409080333|gb|EKM80693.1| hypothetical protein AGABI1DRAFT_119282 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 361
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 17/122 (13%)
Query: 208 IMETI---QKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALD--ESHFKELIMEHA 262
IM ++ QK K + C V G + + TGGSY + L+ ++ + LIM
Sbjct: 162 IMNSVFSAQKLKVTIDVCQVFG--PDTVFLQQAAHLTGGSY-IHLERRDALLQYLIMAFL 218
Query: 263 PPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCR 322
PPPP A+ K+ F RA C CHK + V +G+ C C + C+ C
Sbjct: 219 PPPPIRKVLAVPTQDKVDF--RAA------CFCHKNI-VDIGFVCSVCLSIFCQPVPVCS 269
Query: 323 IC 324
C
Sbjct: 270 TC 271
>gi|426197233|gb|EKV47160.1| hypothetical protein AGABI2DRAFT_204058 [Agaricus bisporus var.
bisporus H97]
Length = 361
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 17/122 (13%)
Query: 208 IMETI---QKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALD--ESHFKELIMEHA 262
IM ++ QK K + C V G + + TGGSY + L+ ++ + LIM
Sbjct: 162 IMNSVFSAQKLKVTIDVCQVFG--PDTVFLQQAAHLTGGSY-IHLERRDALLQYLIMAFL 218
Query: 263 PPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCR 322
PPPP A+ K+ F RA C CHK + V +G+ C C + C+ C
Sbjct: 219 PPPPIRKVLAVPTQDKVDF--RAA------CFCHKNI-VDIGFVCSVCLSIFCQPVPVCS 269
Query: 323 IC 324
C
Sbjct: 270 TC 271
>gi|89096888|ref|ZP_01169779.1| possible D-amino acid dehydrogenase, large subunit [Bacillus sp.
NRRL B-14911]
gi|89088268|gb|EAR67378.1| possible D-amino acid dehydrogenase, large subunit [Bacillus sp.
NRRL B-14911]
Length = 459
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 91/222 (40%), Gaps = 20/222 (9%)
Query: 59 AFYHAQYRRRLRDRSLVATTARIQKGLIRYLYIVIDLSRAAAEMDFRPSRMAVVAKQVEA 118
+F H L D A+ QK I I++D S + ++M + + ++
Sbjct: 128 SFEHGHEMPELPDGEDEIQQAKNQKSNI---VILMDASGSMKADVSGGNKMMLAKETIKE 184
Query: 119 FVREFFDQNPLS-----QIGLVTVKDGVANC-----LTDLGGSPESHIKALMGKLGCSGD 168
F D +S +G +D +C + LG ++ M SG
Sbjct: 185 FTSSLEDDASVSLMAYGHVGTGNDEDKAESCSRIDEVFPLGAYEKTAFNKSMDSFEASGW 244
Query: 169 SSLQNALDLVQGLLSQIPSYGHREVL-ILYSALSTCDPGDIMETIQKCKESKI--RCSVI 225
+ L A+D + LLS S ++ L I+ + TCD GD +E Q+ + S I + ++I
Sbjct: 245 TPLAGAIDKARELLSAYNSTDYKNTLYIVSDGVETCD-GDPVEAAQQLQGSNIEAKVNII 303
Query: 226 GLSAE---MFICKHLCQDTGGSYSVALDESHFKELIMEHAPP 264
G + K + + GG+Y+ D+ ++ +++ P
Sbjct: 304 GFDVDDEGQKQLKEVAEAGGGTYATVRDKDELEDQVLKKWKP 345
>gi|302496747|ref|XP_003010374.1| hypothetical protein ARB_03075 [Arthroderma benhamiae CBS 112371]
gi|291173917|gb|EFE29734.1| hypothetical protein ARB_03075 [Arthroderma benhamiae CBS 112371]
Length = 414
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 12/124 (9%)
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESH-FKELIMEHAPPPP 266
IM +I C+ I + L+ + + C T G Y ++LD F + +M P
Sbjct: 251 IMNSIFACQRLHIPIDICKLAGDAVFLQQACDATRGIY-MSLDSPRGFLQYLMLAFLPD- 308
Query: 267 AIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELP--TDCRIC 324
+ A NLI P R + C CH++V V VG+ C C + CE P +C C
Sbjct: 309 ---QRARRNLI---LPTRVDVDFRAACFCHRKV-VNVGFVCSICLSIFCEPPEGANCLTC 361
Query: 325 GLQL 328
G L
Sbjct: 362 GTHL 365
>gi|212529242|ref|XP_002144778.1| transcription factor TFIIH subunit Tfb4, putative [Talaromyces
marneffei ATCC 18224]
gi|210074176|gb|EEA28263.1| transcription factor TFIIH subunit Tfb4, putative [Talaromyces
marneffei ATCC 18224]
Length = 380
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 64/157 (40%), Gaps = 16/157 (10%)
Query: 187 SYGHREVLILYSALSTCDPGD----IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG 242
S G + +++ S S+ D IM +I C+ I V LS + + T
Sbjct: 202 SLGLQSRILIVSVSSSTDSAHQYIPIMNSIFACQRLHIPIDVCKLSGDAVFLQQASDATR 261
Query: 243 GSY-SVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKV 301
G Y S++ + L+M P + + + + + F RA C CH+ V V
Sbjct: 262 GVYMSLSEPRGLLQYLMMAFLPDQRSRKHLIVPSRVDVDF--RAA------CFCHRRV-V 312
Query: 302 GVGYTCPRCKARVCELPT--DCRICGLQLVSSPHLAR 336
+G+ C C + CE P DC CG L + AR
Sbjct: 313 NIGFVCSICLSIFCEPPENGDCLTCGTHLEIGDYSAR 349
>gi|449683803|ref|XP_002159513.2| PREDICTED: general transcription factor IIH subunit 3-like [Hydra
magnipapillata]
Length = 291
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 80/215 (37%), Gaps = 27/215 (12%)
Query: 138 KDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGH------- 190
KDG +++ + + K L + S++ N L+ G L++ Y H
Sbjct: 86 KDGKYELFSEMNETLQCEFKRLFAE----SVSNMTNRPSLLAGALTKALCYIHSHDRTAN 141
Query: 191 ------REVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS 244
R ++I S+ S+ +M I + I L + TGG
Sbjct: 142 GRRTNARILIIKGSSDSSSQYMTVMNCIFAASKKNIVIDCCALQNNSGFMQQASDITGGV 201
Query: 245 YSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVG 304
Y D S E ++ P P + E K+ P + + C CHK++ V VG
Sbjct: 202 YFFIDDFSGMLEYLLWIFLPDPGLRE-------KLNLPTSSQIDYRAACFCHKQL-VDVG 253
Query: 305 YTCPRCKARVCELPTDCRICG--LQLVSSPHLARS 337
+ C C + C+ C C +L S P A+S
Sbjct: 254 FVCSVCLSIYCQFMPKCATCQTRFKLPSLPLNAKS 288
>gi|302656245|ref|XP_003019878.1| hypothetical protein TRV_06076 [Trichophyton verrucosum HKI 0517]
gi|291183651|gb|EFE39254.1| hypothetical protein TRV_06076 [Trichophyton verrucosum HKI 0517]
Length = 517
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 54/126 (42%), Gaps = 14/126 (11%)
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESH--FKELIMEHAPPP 265
IM +I C+ I + L+ + + C T G Y ++LD + L++ P
Sbjct: 354 IMNSIFACQRLHIPIDICKLAGDAVFLQQACDATRGIY-MSLDSPRGFLQYLMLAFLP-- 410
Query: 266 PAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELP--TDCRI 323
+ A NLI P R + C CH++V V VG+ C C + CE P +C
Sbjct: 411 ---DQRARRNLI---LPTRVDVDFRAACFCHRKV-VDVGFVCSICLSIFCEPPEGANCLT 463
Query: 324 CGLQLV 329
CG L
Sbjct: 464 CGTHLA 469
>gi|327299656|ref|XP_003234521.1| transcription factor TFIIH subunit Tfb4 [Trichophyton rubrum CBS
118892]
gi|326463415|gb|EGD88868.1| transcription factor TFIIH subunit Tfb4 [Trichophyton rubrum CBS
118892]
Length = 413
Score = 42.0 bits (97), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 12/124 (9%)
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESH-FKELIMEHAPPPP 266
IM +I C+ I + L+ + + C T G Y ++LD F + +M P
Sbjct: 250 IMNSIFACQRLHIPIDICKLAGDAVFLQQACDATRGIY-MSLDSPRGFLQYLMLAFLPD- 307
Query: 267 AIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELP--TDCRIC 324
+ A NLI P R + C CH++V V VG+ C C + CE P +C C
Sbjct: 308 ---QRARRNLI---LPTRVDVDFRAACFCHRKV-VDVGFVCSICLSIFCEPPEGANCLTC 360
Query: 325 GLQL 328
G L
Sbjct: 361 GTHL 364
>gi|326480715|gb|EGE04725.1| TFIIH basal transcription factor complex p34 subunit [Trichophyton
equinum CBS 127.97]
Length = 415
Score = 42.0 bits (97), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 12/124 (9%)
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESH-FKELIMEHAPPPP 266
IM +I C+ I + L+ + + C T G Y ++LD F + +M P
Sbjct: 252 IMNSIFACQRLHIPIDICKLAGDAVFLQQACDATRGIY-MSLDSPRGFLQYLMLAFLPD- 309
Query: 267 AIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELP--TDCRIC 324
+ A NLI P R + C CH++V V VG+ C C + CE P +C C
Sbjct: 310 ---QRARRNLI---LPTRVDVDFRAACFCHRKV-VDVGFVCSICLSIFCEPPEGANCLTC 362
Query: 325 GLQL 328
G L
Sbjct: 363 GTHL 366
>gi|326473589|gb|EGD97598.1| transcription factor TFIIH subunit Tfb4 [Trichophyton tonsurans CBS
112818]
Length = 415
Score = 42.0 bits (97), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 12/124 (9%)
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESH-FKELIMEHAPPPP 266
IM +I C+ I + L+ + + C T G Y ++LD F + +M P
Sbjct: 252 IMNSIFACQRLHIPIDICKLAGDAVFLQQACDATRGIY-MSLDSPRGFLQYLMLAFLPD- 309
Query: 267 AIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELP--TDCRIC 324
+ A NLI P R + C CH++V V VG+ C C + CE P +C C
Sbjct: 310 ---QRARRNLI---LPTRVDVDFRAACFCHRKV-VDVGFVCSICLSIFCEPPEGANCLTC 362
Query: 325 GLQL 328
G L
Sbjct: 363 GTHL 366
>gi|315052780|ref|XP_003175764.1| TFIIH basal transcription factor complex p34 subunit [Arthroderma
gypseum CBS 118893]
gi|311341079|gb|EFR00282.1| TFIIH basal transcription factor complex p34 subunit [Arthroderma
gypseum CBS 118893]
Length = 413
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 14/125 (11%)
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDE--SHFKELIMEHAPPP 265
IM +I C+ I + L+ + + C T G Y ++LD + L++ P
Sbjct: 250 IMNSIFACQRLHIPIDICKLAGDAVFLQQACDATRGIY-MSLDSPRGFLQYLMLAFLP-- 306
Query: 266 PAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELP--TDCRI 323
+ A NLI P R + C CH++V V VG+ C C + CE P +C
Sbjct: 307 ---DQRARRNLI---LPTRVDVDFRAACFCHRKV-VDVGFVCSICLSIFCEPPEGANCLT 359
Query: 324 CGLQL 328
CG L
Sbjct: 360 CGTHL 364
>gi|242764012|ref|XP_002340688.1| transcription factor TFIIH subunit Tfb4, putative [Talaromyces
stipitatus ATCC 10500]
gi|218723884|gb|EED23301.1| transcription factor TFIIH subunit Tfb4, putative [Talaromyces
stipitatus ATCC 10500]
Length = 380
Score = 41.6 bits (96), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 91/238 (38%), Gaps = 30/238 (12%)
Query: 104 FRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI-KALMGK 162
+RP R VV +QV VRE S + + +A LT SHI + M
Sbjct: 121 YRPFR--VVEEQVLENVRELLASTDASDVSATSTM--LAGALT----LALSHINRRTMTW 172
Query: 163 LGCSGDSSLQNALDLVQGLLSQIP-----SYGHREVLILYSALSTCDPGD----IMETIQ 213
G+SS+ A + S G + +++ S S+ D IM +I
Sbjct: 173 TETHGNSSVDTANAATGSSSAAAVSGGNVSLGLQSRILIVSVSSSTDSAHQYIPIMNSIF 232
Query: 214 KCKESKIRCSVIGLSAEMFICKHLCQDTGGSY-SVALDESHFKELIMEHAPPPPAIAEFA 272
C+ I V LS + + T G Y S+ + L+M P +
Sbjct: 233 ACQRLHIPIDVCKLSGDAVFLQQASDATRGVYMSLTEPRGLLQYLMMAFLPDQRSRKHLV 292
Query: 273 IANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPT--DCRICGLQL 328
+ + + + F RA C CH+ V V +G+ C C + CE P DC CG L
Sbjct: 293 LPSRVDVDF--RAA------CFCHRRV-VNIGFVCSICLSIFCEPPENGDCLTCGTHL 341
>gi|390950385|ref|YP_006414144.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH, subunit SSL1 [Thiocystis violascens
DSM 198]
gi|390426954|gb|AFL74019.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH, subunit SSL1 [Thiocystis violascens
DSM 198]
Length = 358
Score = 41.2 bits (95), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 10/143 (6%)
Query: 89 LYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDG--VANCLT 146
L +++D+SR+ D PSR+ ++++ + DQ ++GL+ V + +T
Sbjct: 103 LLVLLDISRSMLAQDVSPSRLGRARQELQDLIAR--DQQ--VRLGLIVFASTPHVLSPIT 158
Query: 147 DLGGSPESHIKALMGKLGCSG--DSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCD 204
+ GS + + AL L SSL ALD + LL+ +P R +L++ +
Sbjct: 159 EDIGSLLNTLPALSADLASPNLQGSSLTRALDRAESLLAGLPEDSARAILLISDG-DFDE 217
Query: 205 PGDIMETIQKCKESKIRCSVIGL 227
PG + E + + E +R +G+
Sbjct: 218 PG-LTERVARLAEKGVRLHALGM 239
>gi|296815720|ref|XP_002848197.1| TFIIH basal transcription factor complex p34 subunit [Arthroderma
otae CBS 113480]
gi|238841222|gb|EEQ30884.1| TFIIH basal transcription factor complex p34 subunit [Arthroderma
otae CBS 113480]
Length = 413
Score = 41.2 bits (95), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 49/123 (39%), Gaps = 10/123 (8%)
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 267
IM +I C+ I + L+ + + C T G Y F + +M P
Sbjct: 250 IMNSIFACQRLHIPIDICKLAGDAVFLQQACDATRGIYMSVDSPRGFLQYLMLAFLPDQR 309
Query: 268 IAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELP--TDCRICG 325
+ NL+ P R + C CH++V V VG+ C C + CE P +C CG
Sbjct: 310 VRR----NLV---LPTRVDVDFRAACFCHRKV-VDVGFVCSICLSIFCEPPEGANCLTCG 361
Query: 326 LQL 328
L
Sbjct: 362 THL 364
>gi|258567552|ref|XP_002584520.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237905966|gb|EEP80367.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 398
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 51/123 (41%), Gaps = 10/123 (8%)
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 267
IM +I C+ I + LS + + C T G Y F + +M P
Sbjct: 235 IMNSIFACQRLHIPIDICKLSGDAVFLQQACDATRGIYVPVDHPLGFLQYLMVAFLP--- 291
Query: 268 IAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELP--TDCRICG 325
+ + ++LI P R + C CH++V V VG+ C C + CE P DC CG
Sbjct: 292 -DQRSRSHLI---LPTRVDVDFRAACFCHRKV-VDVGFVCSICLSIFCEPPEGADCLTCG 346
Query: 326 LQL 328
L
Sbjct: 347 THL 349
>gi|301122235|ref|XP_002908844.1| general transcription factor IIH subunit, putative [Phytophthora
infestans T30-4]
gi|262099606|gb|EEY57658.1| general transcription factor IIH subunit, putative [Phytophthora
infestans T30-4]
Length = 293
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 241 TGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVK 300
TGG Y D S + ++ P P++ + + P + ++C CH+EV
Sbjct: 197 TGGIYYKPNDHSGLLQYLISIYLPDPSMRKL-------LKLPSQDSVDFRAMCFCHREV- 248
Query: 301 VGVGYTCPRCKARVCELPTDCRICGLQ 327
+ Y CP C + CE C CG++
Sbjct: 249 ISTAYVCPVCLSLFCEFRPICSTCGIR 275
>gi|348676264|gb|EGZ16082.1| hypothetical protein PHYSODRAFT_508027 [Phytophthora sojae]
Length = 298
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 241 TGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVK 300
TGG Y D S + ++ P P++ + + P + ++C CH+EV
Sbjct: 202 TGGIYYKPNDHSGLLQYLISIYLPDPSMRKL-------LKLPSQDSVDFRAMCFCHREV- 253
Query: 301 VGVGYTCPRCKARVCELPTDCRICGLQ 327
+ Y CP C + CE C CG++
Sbjct: 254 ISTAYVCPVCLSLFCEFRPICSTCGIR 280
>gi|303314233|ref|XP_003067125.1| Transcription factor Tfb4 family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240106793|gb|EER24980.1| Transcription factor Tfb4 family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|320037386|gb|EFW19323.1| transcription factor TFIIH subunit Tfb4 [Coccidioides posadasii
str. Silveira]
Length = 395
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 50/123 (40%), Gaps = 10/123 (8%)
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 267
IM +I C+ I + LS + + C T G Y F + +M P
Sbjct: 232 IMNSIFACQRLHIPIDICKLSGDAVFLQQACDATRGIYVPVDHPRGFLQYLMVAFLP--- 288
Query: 268 IAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELP--TDCRICG 325
+ + +LI P R + C CH++V V VG+ C C + CE P DC CG
Sbjct: 289 -DQRSRRHLI---LPTRVDVDFRAACFCHRKV-VDVGFVCSICLSIFCEPPEGADCLTCG 343
Query: 326 LQL 328
L
Sbjct: 344 THL 346
>gi|119174356|ref|XP_001239539.1| hypothetical protein CIMG_09160 [Coccidioides immitis RS]
gi|392869735|gb|EAS28255.2| transcription factor tfb4 [Coccidioides immitis RS]
Length = 396
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 50/123 (40%), Gaps = 10/123 (8%)
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 267
IM +I C+ I + LS + + C T G Y F + +M P
Sbjct: 233 IMNSIFACQRLHIPIDICKLSGDAVFLQQACDATRGIYVPVDHPRGFLQYLMVAFLP--- 289
Query: 268 IAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELP--TDCRICG 325
+ + +LI P R + C CH++V V VG+ C C + CE P DC CG
Sbjct: 290 -DQRSRRHLI---LPTRVDVDFRAACFCHRKV-VDVGFVCSICLSIFCEPPEGADCLTCG 344
Query: 326 LQL 328
L
Sbjct: 345 THL 347
>gi|429729565|ref|ZP_19264224.1| von Willebrand factor type A domain protein [Corynebacterium durum
F0235]
gi|429149589|gb|EKX92567.1| von Willebrand factor type A domain protein [Corynebacterium durum
F0235]
Length = 747
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 20/148 (13%)
Query: 131 QIGLVTVKDGVAN-------------CLTDLGGSPESHIKALMGKLGCSGDSSLQNALDL 177
Q+ L+T G N L LGGS I A + L SG + + AL
Sbjct: 58 QLALLTYGTGTGNSDEEKEAGCKDVQTLVPLGGS-RDEIAAQIDSLVASGYTPIGPALLA 116
Query: 178 VQGLL-SQIPSYGHREVLILYSALSTCDPGDIMETIQKC--KESKIRCSVIGLSAEMFI- 233
+ L ++ R ++++ + TC P ++ E + + S + V+GL+A+ +
Sbjct: 117 AEKTLDTKKTEKNKRHIVLVSDGIDTCAPPEMAEVARDIHKRNSNVTIDVVGLNADETVR 176
Query: 234 --CKHLCQDTGGSYSVALDESHFKELIM 259
K L GG+Y+ A DE+ L+
Sbjct: 177 EQLKELAAAGGGTYADATDEASVSTLVT 204
>gi|255953875|ref|XP_002567690.1| Pc21g06450 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589401|emb|CAP95542.1| Pc21g06450 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 374
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 51/125 (40%), Gaps = 14/125 (11%)
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESH--FKELIMEHAPPP 265
+M +I C+ I V LS + + T G Y +AL E + L+M P
Sbjct: 222 VMNSIFACQRLSIPIDVCKLSGDAVFLQQASDATKGVY-MALAEPRGLLQYLMMAFLPDQ 280
Query: 266 PAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPT--DCRI 323
+ + + + F RA C CH+ V V VG+ C C + CE P DC
Sbjct: 281 RSRRHLVLPTRVDVDF--RAA------CFCHRRV-VDVGFVCSICLSIFCEPPPGGDCMT 331
Query: 324 CGLQL 328
CG L
Sbjct: 332 CGSHL 336
>gi|345865533|ref|ZP_08817714.1| von Willebrand factor type A [endosymbiont of Tevnia jerichonana
(vent Tica)]
gi|345123341|gb|EGW53240.1| von Willebrand factor type A [endosymbiont of Tevnia jerichonana
(vent Tica)]
Length = 342
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 68/144 (47%), Gaps = 8/144 (5%)
Query: 89 LYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKD--GVANCLT 146
L +++D+SR+ D +PSR+ ++V+ + + N +IGL+ V + +T
Sbjct: 99 LVVLMDISRSMEVADVQPSRLGRARQEVQ----DLLELNREVRIGLIAFASVAHVISPVT 154
Query: 147 DLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPG 206
+ S + + A+ L S L+ AL + LLS R +L++ +PG
Sbjct: 155 EDSNSILNALPAISTGLARLQGSRLKAALQRAEQLLSGGEEENGRSILLISDG-DLVEPG 213
Query: 207 DIMETIQKCKESKIRCSVIGLSAE 230
++E + K + IR V+G+ +
Sbjct: 214 -LLEAVAKLAQKGIRLHVLGIGTQ 236
>gi|170596989|ref|XP_001902970.1| Zinc finger, C2H2 type family protein [Brugia malayi]
gi|158589013|gb|EDP28181.1| Zinc finger, C2H2 type family protein [Brugia malayi]
Length = 179
Score = 39.7 bits (91), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 18/100 (18%)
Query: 341 LFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLL--------SSGNKPGLYVACPKCKKH 392
L PI EV L + R R + C C++ ++ +G KP +C CKK+
Sbjct: 52 LVPIEKLMEVVKLSKQERRTRKKQRCEICRKEVIYMKSHMTTHTGEKP---YSCSICKKN 108
Query: 393 FCLECDIYIH------ESLHNCPGC-ESLRHSNPIVANEG 425
F D+ H E LH+CP C +S H + ++++ G
Sbjct: 109 FTQFGDMKKHMMIHTGEKLHSCPICRKSFTHKHHLLSHMG 148
>gi|345878724|ref|ZP_08830424.1| protein nirF [endosymbiont of Riftia pachyptila (vent Ph05)]
gi|344224235|gb|EGV50638.1| protein nirF [endosymbiont of Riftia pachyptila (vent Ph05)]
Length = 344
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 12/146 (8%)
Query: 89 LYIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL 148
L +++D+SR+ D +PSR+ ++V+ + + N +IGL+ VA+ ++ +
Sbjct: 101 LVVLMDISRSMEVADVQPSRLGRARQEVQ----DLLELNREVRIGLIAFAS-VAHVISPV 155
Query: 149 GGSPESHIKAL----MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCD 204
S + AL G G S L+ AL + LLS R +L++ +
Sbjct: 156 TEDSNSILNALPAISTGLARLQG-SRLKAALQRAEQLLSGGEEENGRSILLISDG-DLVE 213
Query: 205 PGDIMETIQKCKESKIRCSVIGLSAE 230
PG ++E + K + IR V+G+ +
Sbjct: 214 PG-LLEAVAKLAQKGIRLHVLGIGTQ 238
>gi|73669697|ref|YP_305712.1| BatA [Methanosarcina barkeri str. Fusaro]
gi|72396859|gb|AAZ71132.1| BatA [Methanosarcina barkeri str. Fusaro]
Length = 317
Score = 39.3 bits (90), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 28/188 (14%)
Query: 91 IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
+V+D+S + D+ PSR+ E + ++ G+VT + G A L
Sbjct: 93 LVMDVSGSMQAQDYTPSRLEAAKSSAEILINSLKSKD---YAGIVTFESG-ATTAAYLSP 148
Query: 151 SPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIM- 209
E I+ L G +++ + L L + S IP+ ++V+IL S + G I
Sbjct: 149 YKEKVIEKLRNVAPKEGSTAIGDGLSLGIDMASSIPN--KKKVIILLSD-GVNNAGYISP 205
Query: 210 -ETIQKCKESKIRCSVIGLSA--------EMF-----------ICKHLCQDTGGSYSVAL 249
E IQ K + I+ IG+ + + F + + DTGG Y ++
Sbjct: 206 DEAIQYAKANNIQVYTIGMGSNGNVLLGYDWFGNPQYAELDEATLQAIANDTGGKYFKSI 265
Query: 250 DESHFKEL 257
D+ E+
Sbjct: 266 DDKTLDEI 273
>gi|449295631|gb|EMC91652.1| hypothetical protein BAUCODRAFT_300256 [Baudoinia compniacensis
UAMH 10762]
Length = 386
Score = 38.9 bits (89), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 207 DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPP 266
+IM I C+ + V+ L+ + + TGG Y ++L S + ++++
Sbjct: 226 EIMNCIFACQRMSVPIDVLKLAGDPVFLQQAADTTGGIY-MSLSTSTARAGLLQYLMFAY 284
Query: 267 AIAEFAIANLIKMGFPQRAGEGSI--SICSCHKEVKVGVGYTCPRCKARVCE-LPT-DCR 322
+ + A +LI G GEG + C CHK V V +G+ C C + CE LP C
Sbjct: 285 LMDQTARNHLIAPG----EGEGVDFRAACFCHKRV-VDIGFVCSICLSIFCEPLPDGTCL 339
Query: 323 ICGLQL 328
+CG L
Sbjct: 340 LCGSHL 345
>gi|121713686|ref|XP_001274454.1| transcription factor TFIIH subunit Tfb4, putative [Aspergillus
clavatus NRRL 1]
gi|119402607|gb|EAW13028.1| transcription factor TFIIH subunit Tfb4, putative [Aspergillus
clavatus NRRL 1]
Length = 386
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 53/132 (40%), Gaps = 12/132 (9%)
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSY-SVALDESHFKELIMEHAPPPP 266
IM I C+ + V LS + + T G Y S+A + L+M P
Sbjct: 232 IMNAIFACQRLHVPIDVCKLSGDAVFLQQASDATKGVYMSLAEPRGLLQYLMMAFLPDQR 291
Query: 267 AIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTD--CRIC 324
+ + + + F RA C CH+ V V +G+ C C + CE P + C C
Sbjct: 292 SRRHLVLPTRVDVDF--RAA------CFCHRRV-VDIGFVCSICLSIFCEPPENGGCLTC 342
Query: 325 GLQLVSSPHLAR 336
G L + + AR
Sbjct: 343 GTHLETGDYGAR 354
>gi|402225928|gb|EJU05988.1| hypothetical protein DACRYDRAFT_73212 [Dacryopinax sp. DJM-731 SS1]
Length = 334
Score = 38.5 bits (88), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 7/111 (6%)
Query: 90 YIVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 149
IVID S DF+P+R + V + + D NP + +G++T+ L
Sbjct: 7 MIVIDNSEFMRNGDFQPTRFGAQSDAVSSIFQTKVDSNPENTVGVMTMAGKAPEVLV--- 63
Query: 150 GSPESHIKALMGKLGCS---GDSSLQNALDLVQGLLSQIPSYGHREVLILY 197
+P I ++ L + G++ + + + Q L P+ R+ ++++
Sbjct: 64 -TPTQDIGKILSALHNTRLGGEADIATGIQVAQLALKHRPNKSQRQRIVVF 113
>gi|119479015|ref|XP_001259536.1| transcription factor TFIIH subunit Tfb4, putative [Neosartorya
fischeri NRRL 181]
gi|119407690|gb|EAW17639.1| transcription factor TFIIH subunit Tfb4, putative [Neosartorya
fischeri NRRL 181]
Length = 385
Score = 38.5 bits (88), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 49/124 (39%), Gaps = 12/124 (9%)
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSY-SVALDESHFKELIMEHAPPPP 266
IM I C+ I V LS + + T G Y S++ + L+M P
Sbjct: 231 IMNCIFACQRLHIPIDVCKLSGDAVFLQQASDATKGVYMSLSEPRGLLQYLMMAFLPDQR 290
Query: 267 AIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPT--DCRIC 324
+ I + + F RA C CH+ V V +G+ C C + CE P DC C
Sbjct: 291 SRRHLVIPTRVDVDF--RAA------CFCHRRV-VDIGFVCSICLSIFCEPPENGDCLTC 341
Query: 325 GLQL 328
G L
Sbjct: 342 GTHL 345
>gi|70997489|ref|XP_753492.1| transcription factor TFIIH subunit Tfb4 [Aspergillus fumigatus
Af293]
gi|66851128|gb|EAL91454.1| transcription factor TFIIH subunit Tfb4, putative [Aspergillus
fumigatus Af293]
gi|159126779|gb|EDP51895.1| transcription factor TFIIH subunit Tfb4, putative [Aspergillus
fumigatus A1163]
Length = 387
Score = 38.1 bits (87), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 49/124 (39%), Gaps = 12/124 (9%)
Query: 208 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSY-SVALDESHFKELIMEHAPPPP 266
IM I C+ I V LS + + T G Y S++ + L+M P
Sbjct: 231 IMNCIFACQRLHIPIDVCKLSGDAVFLQQASDATKGVYMSLSEPRGLLQYLMMAFLPDQR 290
Query: 267 AIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPT--DCRIC 324
+ I + + F RA C CH+ V V +G+ C C + CE P DC C
Sbjct: 291 SRRHLVIPTRVDVDF--RAA------CFCHRRV-VDIGFVCSICLSIFCEPPENGDCLTC 341
Query: 325 GLQL 328
G L
Sbjct: 342 GTHL 345
>gi|429730769|ref|ZP_19265415.1| von Willebrand factor type A domain protein [Corynebacterium durum
F0235]
gi|429147207|gb|EKX90237.1| von Willebrand factor type A domain protein [Corynebacterium durum
F0235]
Length = 661
Score = 38.1 bits (87), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 184 QIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRC--SVIGLSAEMFICKHL---C 238
++PS G R+++++ + TC P + E ++ ++ + +VIGL+ + L
Sbjct: 148 ELPSQGARQIVLVSDGIDTCAPPPVCEVAKQIRQRGVDVVINVIGLNVDDQARSELQCVA 207
Query: 239 QDTGGSYSVALDESHFKELIM 259
++ GGSY+ A D + KE ++
Sbjct: 208 KEGGGSYADAKDAASLKEQLV 228
>gi|170585154|ref|XP_001897351.1| Zinc finger, C2H2 type family protein [Brugia malayi]
gi|158595226|gb|EDP33795.1| Zinc finger, C2H2 type family protein [Brugia malayi]
Length = 764
Score = 38.1 bits (87), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 18/100 (18%)
Query: 341 LFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLL--------SSGNKPGLYVACPKCKKH 392
L PI EV L + R R + C C++ ++ +G KP +C CKK+
Sbjct: 310 LVPIEKLMEVVKLSKQERRTRKKQRCEICRKEVIYMKSHMTTHTGEKP---YSCSICKKN 366
Query: 393 FCLECDIYIH------ESLHNCPGC-ESLRHSNPIVANEG 425
F D+ H E LH+CP C +S H + ++++ G
Sbjct: 367 FTQFGDMKKHMMIHTGEKLHSCPICRKSFTHKHHLLSHMG 406
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,812,446,448
Number of Sequences: 23463169
Number of extensions: 282023207
Number of successful extensions: 1033142
Number of sequences better than 100.0: 538
Number of HSP's better than 100.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 115
Number of HSP's that attempted gapping in prelim test: 1030673
Number of HSP's gapped (non-prelim): 884
length of query: 425
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 280
effective length of database: 8,957,035,862
effective search space: 2507970041360
effective search space used: 2507970041360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 78 (34.7 bits)