BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014401
         (425 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1Z60|A Chain A, Solution Structure Of The Carboxy-Terminal Domain Of Human
           Tfiih P44 Subunit
          Length = 59

 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 5/46 (10%)

Query: 366 CFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 411
           C+GCQ  L        +YV C  C+  FC++CD+++H+SLH+CPGC
Sbjct: 18  CYGCQGEL----KDQHVYV-CAVCQNVFCVDCDVFVHDSLHSCPGC 58


>pdb|2X5N|A Chain A, Crystal Structure Of The Sprpn10 Vwa Domain
          Length = 192

 Score = 31.2 bits (69), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/136 (19%), Positives = 55/136 (40%), Gaps = 2/136 (1%)

Query: 91  IVIDLSRAAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 150
           I+ID S      D+ P+R       V     +  + NP +  GL+T+ D     L+ L  
Sbjct: 7   ILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLTR 66

Query: 151 SPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTC-DPGDIM 209
                + A M  L   G++   + + + Q  L    +   R+ ++ +       D  +++
Sbjct: 67  DYGKFLSA-MHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLI 125

Query: 210 ETIQKCKESKIRCSVI 225
              ++ K++ +   +I
Sbjct: 126 RLAKRMKKNNVAIDII 141


>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           385- 413) Of Human Zinc Finger Protein 268
          Length = 42

 Score = 28.5 bits (62), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 3/33 (9%)

Query: 375 SSGNKPGLYVACPKCKKHFCLECDIYIHESLHN 407
           SSG KP  YV C +C K F L+  + IHE +H 
Sbjct: 5   SSGQKP--YV-CNECGKAFGLKSQLIIHERIHT 34


>pdb|3KSV|A Chain A, Hypothetical Protein From Leishmania Major
          Length = 149

 Score = 28.1 bits (61), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 9/74 (12%)

Query: 123 FFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLG---CSGDSSLQNALDLVQ 179
           F D NPLS+  ++ +    A+CL +LG    + +  L+ K        D S+Q       
Sbjct: 37  FMDINPLSRGHMLVIPKEHASCLHELGMEDAADVGVLLAKASRAVAGPDGSMQ------Y 90

Query: 180 GLLSQIPSYGHREV 193
            +L    S  H+EV
Sbjct: 91  NVLQNNGSLAHQEV 104


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,567,628
Number of Sequences: 62578
Number of extensions: 432136
Number of successful extensions: 879
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 873
Number of HSP's gapped (non-prelim): 10
length of query: 425
length of database: 14,973,337
effective HSP length: 102
effective length of query: 323
effective length of database: 8,590,381
effective search space: 2774693063
effective search space used: 2774693063
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)