BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014403
(425 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94F87|CMT2_ARATH DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana
GN=CMT2 PE=2 SV=3
Length = 1295
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 64 HYQSFCRNGVKVSVHDFVYVLAEENKRLIAYLEDMYEDSRGNKMVVVRWFHK-IDEVGIF 122
HY +G S+ DF Y+ EE + + + + ++ + G V+WF++ D +
Sbjct: 569 HYSQAKVDGHTFSLGDFAYIKGEEEETHVGQIVEFFKTTDGESYFRVQWFYRATDTIMER 628
Query: 123 LPHNFNDREIFFSLCLQDLSIECIDGLATVL 153
N + R +F+S + D ++C+ TVL
Sbjct: 629 QATNHDKRRLFYSTVMNDNPVDCLISKVTVL 659
>sp|Q3LHL9|WGE_DROME Protein winged eye OS=Drosophila melanogaster GN=wge PE=1 SV=1
Length = 1658
Score = 37.7 bits (86), Expect = 0.18, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 51 WLGSSWMS-----RKKRKHYQSFCRNGVKVSVHDFVYVLA--EENKRLIAYLEDMYEDSR 103
W G+++ R +++ Y++ R ++V D L+ ++ I +E M+E +
Sbjct: 1483 WYGTAYRKAGVKGRARKQFYKTIKRGKETITVGDSAVFLSTGRPDRPYIGRIESMWETTT 1542
Query: 104 GNKMVVVRWFHKIDE 118
GNK+V V WF+ +E
Sbjct: 1543 GNKVVRVAWFYHPEE 1557
>sp|Q8BSQ9|PB1_MOUSE Protein polybromo-1 OS=Mus musculus GN=Pbrm1 PE=1 SV=4
Length = 1634
Score = 36.6 bits (83), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 3/129 (2%)
Query: 53 GSSWMSRKKRKHYQSFCRNGVKVSVHDFVYV-LAEEN-KRLIAYLEDMYEDSRGNKMVVV 110
G++ +S R + Q V D+VYV AE N + I +E ++EDS G K +
Sbjct: 936 GTTGLSGLHRTYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYG 995
Query: 111 RWFHKIDEVGIFLPHNFNDREIFFSLCLQDLSIECIDGLATVLSPQHFEKFMNEATYPQL 170
WF++ +E F ++E+F S + + I G V+ + + K E +
Sbjct: 996 CWFYRPNETFHLATRKFLEKEVFKSDYYNKVPVSKILGKCVVMFVKEYFKLCPE-NFRDE 1054
Query: 171 QPFICDKQF 179
F+C+ ++
Sbjct: 1055 DVFVCESRY 1063
>sp|Q86U86|PB1_HUMAN Protein polybromo-1 OS=Homo sapiens GN=PBRM1 PE=1 SV=1
Length = 1689
Score = 36.6 bits (83), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 3/129 (2%)
Query: 53 GSSWMSRKKRKHYQSFCRNGVKVSVHDFVYV-LAEEN-KRLIAYLEDMYEDSRGNKMVVV 110
G++ +S R + Q V D+VYV AE N + I +E ++EDS G K +
Sbjct: 936 GAAGLSGLHRTYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYG 995
Query: 111 RWFHKIDEVGIFLPHNFNDREIFFSLCLQDLSIECIDGLATVLSPQHFEKFMNEATYPQL 170
WF++ +E F ++E+F S + + I G V+ + + K E +
Sbjct: 996 CWFYRPNETFHLATRKFLEKEVFKSDYYNKVPVSKILGKCVVMFVKEYFKLCPE-NFRDE 1054
Query: 171 QPFICDKQF 179
F+C+ ++
Sbjct: 1055 DVFVCESRY 1063
>sp|Q90941|PB1_CHICK Protein polybromo-1 OS=Gallus gallus GN=PBRM1 PE=1 SV=1
Length = 1633
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 15/110 (13%)
Query: 77 VHDFVYV-LAEEN-KRLIAYLEDMYEDSRGNKMVVVRWFHKIDEVGIFLPHNFNDREIFF 134
V D+VYV AE N + I +E ++EDS G K + WF++ +E F ++E+F
Sbjct: 958 VGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLATRKFLEKEVFK 1017
Query: 135 SLCLQDLSIECIDGLATVLSPQHFEKFMNEATYPQLQPFICDKQFENDDV 184
S + + I G V+ + + K +C + F ++DV
Sbjct: 1018 SDYYNKVPVSKILGKCVVMFVKEYFK-------------LCPENFRDEDV 1054
>sp|Q9AXT8|CMT1_MAIZE DNA (cytosine-5)-methyltransferase 1 OS=Zea mays GN=MET2A PE=1 SV=1
Length = 912
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 11/119 (9%)
Query: 60 KKRKHYQSFCRNGVKVSVHDFVYVLAEENKR-LIAYLEDMYEDSRGNKMVVVRWFHKIDE 118
K R HY+S + V + D VYV A EN+ I + + +E + RWF + ++
Sbjct: 171 KARCHYRSAKVDNVVYCLGDDVYVKAGENEADYIGRITEFFEGTDQCHYFTCRWFFRAED 230
Query: 119 VGI-------FLPHNFNDREIFFSLCLQDLSIECIDGLATVLSPQHFEKFMNEATYPQL 170
I H + R +F S D ++CI ++ H + M+ QL
Sbjct: 231 TVINSLVSISVDGHKHDPRRVFLSEEKNDNVLDCIISKVKIV---HVDPNMDPKAKAQL 286
>sp|Q8LPU5|CMT3_MAIZE DNA (cytosine-5)-methyltransferase 3 OS=Zea mays GN=DMT105 PE=2
SV=1
Length = 915
Score = 33.1 bits (74), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 11/119 (9%)
Query: 60 KKRKHYQSFCRNGVKVSVHDFVYVLAEENKR-LIAYLEDMYEDSRGNKMVVVRWFHKIDE 118
K R HY+S + + + D VYV A EN+ I + + +E + RWF + ++
Sbjct: 175 KARCHYRSAKVDNIVYCLGDDVYVKAGENEADYIGRITEFFEGTDRCHYFTCRWFFRAED 234
Query: 119 VGI-------FLPHNFNDREIFFSLCLQDLSIECIDGLATVLSPQHFEKFMNEATYPQL 170
I H + R +F S D ++CI ++ H + M+ QL
Sbjct: 235 TVINSLVSINVDGHKHDPRRVFLSEEKNDNVLDCIISKVKIV---HVDPNMDPKAKAQL 290
>sp|Q9ARI6|CMT2_MAIZE DNA (cytosine-5)-methyltransferase 2 OS=Zea mays GN=ZMET5 PE=2 SV=1
Length = 915
Score = 33.1 bits (74), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 11/119 (9%)
Query: 60 KKRKHYQSFCRNGVKVSVHDFVYVLAEENKR-LIAYLEDMYEDSRGNKMVVVRWFHKIDE 118
K R HY+S + + + D VYV A EN+ I + + +E + RWF + ++
Sbjct: 175 KARCHYRSAKVDNIVYCLGDDVYVKAGENEADYIGRITEFFEGTDRCHYFTCRWFFRAED 234
Query: 119 VGI-------FLPHNFNDREIFFSLCLQDLSIECIDGLATVLSPQHFEKFMNEATYPQL 170
I H + R +F S D ++CI ++ H + M+ QL
Sbjct: 235 TVINSLVSINVDGHKHDPRRVFLSEEKNDNVLDCIISKVKIV---HVDPNMDPKAKAQL 290
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 165,278,099
Number of Sequences: 539616
Number of extensions: 7091318
Number of successful extensions: 16088
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 16080
Number of HSP's gapped (non-prelim): 19
length of query: 425
length of database: 191,569,459
effective HSP length: 120
effective length of query: 305
effective length of database: 126,815,539
effective search space: 38678739395
effective search space used: 38678739395
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)