BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014404
(425 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B8K|A Chain A, Structure Of The Truncated Human Dihydrolipoyl
Acetyltransferase (E2)
Length = 239
Score = 253 bits (647), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 125/247 (50%), Positives = 171/247 (69%), Gaps = 9/247 (3%)
Query: 179 PAKAPKGKDVAAPALDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQ 238
P AP P + DIP S IR++ A RL+ SKQTIPHYYL++D+ + ++ +R +
Sbjct: 2 PGMAP------VPTGVFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKE 55
Query: 239 LNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQTENGL 298
LN I E + +ISVND +IKA+ALA KVP NSSW D IRQ V+++VAV T GL
Sbjct: 56 LNKILEGRS--KISVNDFIIKASALACLKVPEANSSWMDTVIRQNHVVDVSVAVSTPAGL 113
Query: 299 YVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAII 358
P++ +A KG+ TIA +V LA KA++ L+P +++GGTFT++NLG FGIK F AII
Sbjct: 114 ITPIVFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGM-FGIKNFSAII 172
Query: 359 NPPQSGILAVGSAEKRVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIE 418
NPPQ+ ILA+G++E ++VP + +S MSVTLSCDHRV+DGA+GA+WL F+ Y+E
Sbjct: 173 NPPQACILAIGASEDKLVPADNEKGFDVASMMSVTLSCDHRVVDGAVGAQWLAEFRKYLE 232
Query: 419 NPESMLL 425
P +MLL
Sbjct: 233 KPITMLL 239
>pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 428
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 134/435 (30%), Positives = 216/435 (49%), Gaps = 25/435 (5%)
Query: 1 MPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSK 60
+P + + EG I +W K GD+V+ +VLCEV+ DKA VE+ +G + +I+ +G+
Sbjct: 7 LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV 66
Query: 61 EIKVGEVIAITVEEEEDIPKFKDYSPSVSDAGXXXXXXXXXXXXXXXXXXXXXISTXXXX 120
VG+ + IT+ D P +++ ++ G +
Sbjct: 67 A-TVGQTL-ITL----DAPGYEN----MTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNA 116
Query: 121 XXXXXXXXXXDRLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLASRGKEVPA 180
R+ A P R A E V + ++GTG NG ++K DI+ +LA K PA
Sbjct: 117 PAAEAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGGAKPAPA 176
Query: 181 KAPKGKDVAAPALDYVD--IPHSQ-----IRKITASRLLFSKQTIPHYYLTVDICVDNLM 233
A + AA + P ++ IR+ A ++ SK T PH L + V L+
Sbjct: 177 AAEEKAAPAAAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLV 236
Query: 234 GLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEY--IRQFKNVNINVA 291
R + +I A G +++ V+KA ALR+ P N+S DE I Q NI +A
Sbjct: 237 AHRKKFKAIA-AEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIA 295
Query: 292 VQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGI 351
T+ GL VPVI+ AD+K + +A+E+ +LA+KA+D L P + +G + T+TN+G G
Sbjct: 296 ADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGG- 354
Query: 352 KQFCAIINPPQSGILAVGS-AEKRVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWL 410
+ F +IN P+ IL +G AEK P + + + ++++LS DHR+IDGA + L
Sbjct: 355 QWFTPVINHPEVAILGIGRIAEK---PIVRDGEIVAAPMLALSLSFDHRMIDGATAQKAL 411
Query: 411 KAFKGYIENPESMLL 425
K + +PE +L+
Sbjct: 412 NHIKRLLSDPELLLM 426
>pdb|3MAE|A Chain A, Crystal Structure Of Probable Dihydrolipamide
Acetyltransferase From Listeria Monocytogenes 4b F2365
pdb|3MAE|B Chain B, Crystal Structure Of Probable Dihydrolipamide
Acetyltransferase From Listeria Monocytogenes 4b F2365
pdb|3MAE|C Chain C, Crystal Structure Of Probable Dihydrolipamide
Acetyltransferase From Listeria Monocytogenes 4b F2365
Length = 256
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/222 (38%), Positives = 130/222 (58%), Gaps = 3/222 (1%)
Query: 197 DIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDL 256
+IP + +RK A + SKQ IPH ++ V++ L+ RN + + G ++
Sbjct: 20 EIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYFAF 79
Query: 257 VIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAE 316
IKA A AL++ P+ NS+WA + I + N+NI++A+ + LYVPVI++AD+K + IA
Sbjct: 80 FIKAVAQALKEFPQLNSTWAGDKIIEHANINISIAIAAGDLLYVPVIKNADEKSIKGIAR 139
Query: 317 EVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVV 376
E+ +LA KA++ L D EGGTFTV N G FG Q IIN PQ+ IL V S KR
Sbjct: 140 EISELAGKARNGKLSQADMEGGTFTV-NSTGSFGSVQSMGIINHPQAAILQVESIVKR-- 196
Query: 377 PGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIE 418
P + D +++ LS DHR++DG + ++L+A K +E
Sbjct: 197 PVIIDDMIAVRDMVNLCLSIDHRILDGLLAGKFLQAIKANVE 238
>pdb|1B5S|A Chain A, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|B Chain B, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|C Chain C, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|D Chain D, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|E Chain E, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
Length = 242
Score = 132 bits (332), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 128/228 (56%), Gaps = 8/228 (3%)
Query: 201 SQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKA 260
S IR+ A ++ SK T PH L + V L+ R + +I A G +++ V+KA
Sbjct: 20 SGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIA-AEKGIKLTFLPYVVKA 78
Query: 261 AALALRKVPRCNSSWADEY--IRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEV 318
ALR+ P N+S DE I Q NI +A T+ GL VPVI+ AD+K + +A+E+
Sbjct: 79 LVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQEI 138
Query: 319 RQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGS-AEKRVVP 377
+LA+KA+D L P + +G + T+TN+G G + F +IN P+ IL +G AEK +V
Sbjct: 139 NELAEKARDGKLTPGEMKGASCTITNIGSAGG-QWFTPVINHPEVAILGIGRIAEKPIVR 197
Query: 378 GLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 425
+ + ++++LS DHR+IDGA + L K + +PE +L+
Sbjct: 198 D---GEIVAAPMLALSLSFDHRMIDGATAQKALNHIKRLLSDPELLLM 242
>pdb|1C4T|A Chain A, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1C4T|B Chain B, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1C4T|C Chain C, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1SCZ|A Chain A, Improved Structural Model For The Catalytic Domain Of
E.Coli Dihydrolipoamide Succinyltransferase
pdb|1E2O|A Chain A, Catalytic Domain From Dihydrolipoamide Succinyltransferase
Length = 233
Score = 132 bits (331), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 119/228 (52%), Gaps = 3/228 (1%)
Query: 198 IPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLV 257
+P +++RK A RLL +K + ++ + +M LR Q E G R+
Sbjct: 7 VPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFY 66
Query: 258 IKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEE 317
+KA AL++ P N+S + + ++++AV T GL PV+RD D G++ I ++
Sbjct: 67 VKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKK 126
Query: 318 VRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVP 377
+++LA K +D L +D GG FT+TN GG FG IINPPQS IL + + + R P
Sbjct: 127 IKELAVKGRDGKLTVEDLTGGNFTITN-GGVFGSLMSTPIINPPQSAILGMHAIKDR--P 183
Query: 378 GLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 425
Q + M + LS DHR+IDG +L K +E+P +LL
Sbjct: 184 MAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLL 231
>pdb|1ZY8|K Chain K, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|L Chain L, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|M Chain M, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|N Chain N, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|O Chain O, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex
Length = 229
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 89/171 (52%), Gaps = 21/171 (12%)
Query: 1 MPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSK 60
MPSLSPTM+EGNI +WLKKEG+ VS G+ LCE+ETDKA V ++ ++G LAKIV +GSK
Sbjct: 8 MPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSK 67
Query: 61 EIKVGEVIAITVEEEED-----IPKFKDYSPSVSDAGXXXXXXXXXXXXXXXXXXXXXIS 115
I++G +I + VEE ED IPK P VS IS
Sbjct: 68 NIRLGSLIGLIVEEGEDWKHVEIPKDVGPPPPVSKP------------SEPRPSPEPQIS 115
Query: 116 TXXXXXXXXXXXXXXDRLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKAD 166
R SP ARN+ E+H++ S TGP G+ K D
Sbjct: 116 IPVKKEHIPGTL----RFRLSPAARNILEKHSLDASQGTATGPRGIFTKED 162
>pdb|3L60|A Chain A, Crystal Structure Of Branched-Chain Alpha-Keto Acid
Dehydrogenase Subunit E2 From Mycobacterium Tuberculosis
Length = 250
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 112/222 (50%), Gaps = 12/222 (5%)
Query: 208 ASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRK 267
A ++ S + IP +V++ L+ LR++ SA I+ L ++ +AL+
Sbjct: 27 AEKMTLSHKEIPTAKASVEVICAELLRLRDRF-----VSAAPEITPFALTLRLLVIALKH 81
Query: 268 VPRCNSSWADE----YIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQ 323
NS+W D + + V++ TE GL VPV+ DA K +A V +L
Sbjct: 82 NVILNSTWVDSGEGPQVHVHRGVHLGFGAATERGLLVPVVTDAQDKNTRELASRVAELIT 141
Query: 324 KAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQ 383
A++ +L P + G TFTV+N G G+ +IN P++ IL +G+ + R P + +
Sbjct: 142 GAREGTLTPAELRGSTFTVSNFGA-LGVDDGVPVINHPEAAILGLGAIKPR--PVVVGGE 198
Query: 384 YKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 425
M++T DHRV+DGA A+++ + IE+PE+ LL
Sbjct: 199 VVARPTMTLTCVFDHRVVDGAQVAQFMCELRDLIESPETALL 240
>pdb|3RQC|A Chain A, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|B Chain B, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|C Chain C, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|D Chain D, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|E Chain E, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|F Chain F, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|G Chain G, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
Length = 224
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 126/225 (56%), Gaps = 20/225 (8%)
Query: 203 IRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAA 262
+R+I ++ +KQ +PH+ + ++ V +++ + L+S + + ++++V + +
Sbjct: 14 LRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSI---LDSAK--ARNRKVTVTGFLARIVP 68
Query: 263 LALRKVPRCNSSWADEYIRQF---KNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVR 319
L++ P N+ + DE R + K NI +AV T +GL V VI+DAD+K + I+ E+
Sbjct: 69 SILKQYPYLNAIY-DETRRVYILKKYYNIGIAVDTPDGLNVFVIKDADRKSMVEISAEIS 127
Query: 320 QLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGL 379
A +A++N L+ + + TFT+TN+G GI IIN P+ IL V R++
Sbjct: 128 DKASRARENKLQLDEVQDSTFTITNVGTIGGIMS-TPIINYPEVAILGV----HRILERE 182
Query: 380 GPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESML 424
G +M ++LSCDHR+IDGA+ ++ K IE+P +++
Sbjct: 183 G------RKYMYLSLSCDHRLIDGAVATRFIVDLKKVIEDPNAII 221
>pdb|2DNE|A Chain A, Solution Structure Of Rsgi Ruh-058, A Lipoyl Domain Of
Human 2-Oxoacid Dehydrogenase
Length = 108
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 67/85 (78%)
Query: 1 MPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSK 60
+PSLSPTMQ G IARW KKEGDK++ G+++ EVETDKATV E +EE Y+AKI+ +G++
Sbjct: 12 LPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTR 71
Query: 61 EIKVGEVIAITVEEEEDIPKFKDYS 85
++ +G +I ITV + EDI FK+Y+
Sbjct: 72 DVPIGAIICITVGKPEDIEAFKNYT 96
>pdb|2DNC|A Chain A, Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain From
Human 2-Oxoacid Dehydrogenase
Length = 98
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 61/77 (79%)
Query: 1 MPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSK 60
MPSLSPTM+EGNI +WLKKEG+ VS G+ LCE+ETDKA V ++ ++G LAKIV +GSK
Sbjct: 12 MPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSK 71
Query: 61 EIKVGEVIAITVEEEED 77
I++G +I + VEE ED
Sbjct: 72 NIRLGSLIGLIVEEGED 88
>pdb|2IHW|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2II3|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II4|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II5|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
Length = 262
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 122/245 (49%), Gaps = 18/245 (7%)
Query: 185 GKDVAAPALDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQE 244
GKD P + H + K ++ L IPH+ ++ + L+ LR +L I
Sbjct: 29 GKDRTEPVKGF----HKAMVKTMSAAL-----KIPHFGYCDEVDLTELVKLREELKPIAF 79
Query: 245 ASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFK---NVNINVAVQTENGLYVP 301
A G ++S +KAA+L L + P N+S DE + + NI +A+ TE GL VP
Sbjct: 80 AR-GIKLSFMPFFLKAASLGLLQFPILNAS-VDENCQNITYKASHNIGIAMDTEQGLIVP 137
Query: 302 VIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPP 361
+++ + + IA E+ +L + L D GGTFT++N+G G +I PP
Sbjct: 138 NVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGS-IGGTYAKPVILPP 196
Query: 362 QSGILAVGSAEKRVVPGLGPD-QYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENP 420
+ I A+G+ + +P + + M+V+ S DHR+IDGA + + +K Y+ENP
Sbjct: 197 EVAIGALGTI--KALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENP 254
Query: 421 ESMLL 425
MLL
Sbjct: 255 AFMLL 259
>pdb|1Y8N|B Chain B, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8O|B Chain B, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8P|B Chain B, Crystal Structure Of The Pdk3-L2 Complex
pdb|2Q8I|B Chain B, Pyruvate Dehydrogenase Kinase Isoform 3 In Complex With
Antitumor Drug Radicicol
pdb|2PNR|C Chain C, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|G Chain G, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
Length = 128
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 63/87 (72%)
Query: 1 MPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSK 60
+P+LSPTM G + RW KK G+K+S G++L E+ETDKAT+ E EEGYLAKI+ +G++
Sbjct: 32 LPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTR 91
Query: 61 EIKVGEVIAITVEEEEDIPKFKDYSPS 87
++ +G + I VE+E DI F DY P+
Sbjct: 92 DVPLGTPLCIIVEKEADISAFADYRPT 118
>pdb|1DPC|A Chain A, Crystallographic And Enzymatic Investigations On The Role
Of Ser558, His610 And Asn614 In The Catalytic Mechanism
Of Azotobacter Vinelandii Dihydrolipoamide
Acetyltransferase (E2p)
Length = 243
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 122/232 (52%), Gaps = 8/232 (3%)
Query: 197 DIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDL 256
++P +++ +I A+ L S +PH + L R ++ E AG +++V L
Sbjct: 17 EVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAE-KAGVKLTVLPL 75
Query: 257 VIKAAALALRKVPRCNSSWA---DEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLST 313
++KA A L+++P NSS A IR+ K V+I AV T +GL VPVIR+ D+K L
Sbjct: 76 LLKACAYLLKELPDFNSSLAPSGQALIRK-KYVHIGFAVDTPDGLLVPVIRNVDQKSLLQ 134
Query: 314 IAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEK 373
+A E +LA+KA+ L +G FT+++LG G F I+N P+ IL V A
Sbjct: 135 LAAEAAELAEKARSKKLGADAMQGACFTISSLGH-IGGTAFTPIVNAPEVAILGVSKASM 193
Query: 374 RVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 425
+ P ++ + ++LS DHRVIDGA A + K + + ++LL
Sbjct: 194 Q--PVWDGKAFQPRLMLPLSLSYDHRVIDGAAAARFTKRLGDLLADIRAILL 243
>pdb|1FYC|A Chain A, Inner Lipoyl Domain From Human Pyruvate Dehydrogenase
(Pdh) Complex, Nmr, 1 Structure
Length = 106
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 63/87 (72%)
Query: 1 MPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSK 60
+P+LSPTM G + RW KK G+K+S G++L E+ETDKAT+ E EEGYLAKI+ +G++
Sbjct: 14 LPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTR 73
Query: 61 EIKVGEVIAITVEEEEDIPKFKDYSPS 87
++ +G + I VE+E DI F DY P+
Sbjct: 74 DVPLGTPLCIIVEKEADISAFADYRPT 100
>pdb|1DPD|A Chain A, Crystallographic And Enzymatic Investigations On The Role
Of Ser558, His610 And Asn614 In The Catalytic Mechanism
Of Azotobacter Vinelandii Dihydrolipoamide
Acetyltransferase (E2p)
Length = 243
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 121/232 (52%), Gaps = 8/232 (3%)
Query: 197 DIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDL 256
++P +++ +I A+ L S +PH + L R ++ E AG +++V L
Sbjct: 17 EVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAE-KAGVKLTVLPL 75
Query: 257 VIKAAALALRKVPRCNSSWA---DEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLST 313
++KA A L+++P NSS A IR+ K V+I AV T +GL VPVIR+ D+K L
Sbjct: 76 LLKACAYLLKELPDFNSSLAPSGQALIRK-KYVHIGFAVDTPDGLLVPVIRNVDQKSLLQ 134
Query: 314 IAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEK 373
+A E +LA+KA+ L +G FT+ +LG G F I+N P+ IL V A
Sbjct: 135 LAAEAAELAEKARSKKLGADAMQGACFTIASLGH-IGGTAFTPIVNAPEVAILGVSKASM 193
Query: 374 RVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 425
+ P ++ + ++LS DHRVI+GA A + K + + ++LL
Sbjct: 194 Q--PVWDGKAFQPRLMLPLSLSYDHRVINGAAAARFTKRLGDLLADIRAILL 243
>pdb|1EAA|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAB|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAC|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAD|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAE|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAF|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
Length = 243
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 122/232 (52%), Gaps = 8/232 (3%)
Query: 197 DIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDL 256
++P +++ +I A+ L S +PH + L R ++ + AG +++V L
Sbjct: 17 EVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAK-KAGVKLTVLPL 75
Query: 257 VIKAAALALRKVPRCNSSWA---DEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLST 313
++KA A L+++P NSS A IR+ K V+I AV T +GL VPVIR+ D+K L
Sbjct: 76 LLKACAYLLKELPDFNSSLAPSGQALIRK-KYVHIGFAVDTPDGLLVPVIRNVDQKSLLQ 134
Query: 314 IAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEK 373
+A E +LA+KA+ L +G FT+++LG G F I+N P+ IL V A
Sbjct: 135 LAAEAAELAEKARSKKLGADAMQGACFTISSLGH-IGGTAFTPIVNAPEVAILGVSKASM 193
Query: 374 RVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 425
+ P ++ + ++LS DHRVI+GA A + K + + ++LL
Sbjct: 194 Q--PVWDGKAFQPRLMLPLSLSYDHRVINGAAAARFTKRLGDLLADIRAILL 243
>pdb|1DPB|A Chain A, Crystallographic And Enzymatic Investigations On The Role
Of Ser558, His610 And Asn614 In The Catalytic Mechanism
Of Azotobacter Vinelandii Dihydrolipoamide
Acetyltransferase (E2p)
Length = 243
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 121/232 (52%), Gaps = 8/232 (3%)
Query: 197 DIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDL 256
++P +++ +I A+ L S +PH + L R ++ E AG +++V L
Sbjct: 17 EVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAE-KAGVKLTVLPL 75
Query: 257 VIKAAALALRKVPRCNSSWA---DEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLST 313
++KA A L+++P NSS A IR+ K V+I AV T +GL VPVIR+ D+K L
Sbjct: 76 LLKACAYLLKELPDFNSSLAPSGQALIRK-KYVHIGFAVDTPDGLLVPVIRNVDQKSLLQ 134
Query: 314 IAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEK 373
+A E +LA+KA+ L +G FT+++LG G F I+N P+ IL V A
Sbjct: 135 LAAEAAELAEKARSKKLGADAMQGACFTISSLGH-IGGTAFTPIVNAPEVAILGVSKASM 193
Query: 374 RVVPGLGPDQYKFSSFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 425
+ P ++ + ++LS D RVI+GA A + K + + ++LL
Sbjct: 194 Q--PVWDGKAFQPRLMLPLSLSYDCRVINGAAAARFTKRLGDLLADIRAILL 243
>pdb|3CRK|C Chain C, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRK|D Chain D, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|C Chain C, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|D Chain D, Crystal Structure Of The Pdhk2-L2 Complex
Length = 87
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 57/78 (73%)
Query: 1 MPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSK 60
+P+LSPTM G + RW KK G+K+S G++L E+ETD AT+ E EEGYLAKI+ +G++
Sbjct: 10 LPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTR 69
Query: 61 EIKVGEVIAITVEEEEDI 78
++ +G + I VE+E DI
Sbjct: 70 DVPLGTPLCIIVEKEADI 87
>pdb|1LAB|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From
Bacillus Stearothermophilus Pyruvate Dehydrogenase
Multienzyme Complex
pdb|1LAC|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From
Bacillus Stearothermophilus Pyruvate Dehydrogenase
Multienzyme Complex
Length = 80
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 1 MPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGS 59
+P + + EG I +W K GD+V+ +VLCEV+ DKA VE+ +G + +I+ +G+
Sbjct: 6 LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGT 64
>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
pdb|2XT6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
Length = 1113
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 85/205 (41%), Gaps = 32/205 (15%)
Query: 227 ICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWA------DEYI 280
+ +DN + + N L + G +IS L+ A A++K P N +A
Sbjct: 21 LMIDNRVVINNHLKRTR----GGKISFTHLLGYAIVQAVKKFPNMNRHFAVVDGKPTAIT 76
Query: 281 RQFKNVNINVAVQTENG---LYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEG 337
N+ + + +Q ++G L V I+ + + ++A+D L +D+ G
Sbjct: 77 PAHTNLGLAIDLQGKDGNRSLVVAAIKRCETMRFGQFIAAYEDIVRRARDGKLTAEDFSG 136
Query: 338 GTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSAEKRVVPGLGPDQYKFSS--------- 388
T ++TN G G + Q I+ G+ E P +++ +S
Sbjct: 137 VTISLTN-PGTLGTVHSVPRLMQGQGAIIGAGAMEY-------PAEFQGASEERIADLGI 188
Query: 389 --FMSVTLSCDHRVIDGAIGAEWLK 411
+++T + DHR+I GA ++L+
Sbjct: 189 GKLITLTSTYDHRIIQGAESGDFLR 213
>pdb|1PMR|A Chain A, Lipoyl Domain From The Dihydrolipoyl Succinyltransferase
Component Of The 2-Oxoglutarate Dehydrogenase
Multienzyme Complex Of Escherichia Coli, Nmr, 25
Structures
Length = 80
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 1 MPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGS 59
+P L ++ + +A W KK GD V EVL E+ETDK +E+ +G L +++ +G+
Sbjct: 7 VPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGT 65
>pdb|1GHJ|A Chain A, Solution Structure Of The Lipoyl Domain Of The 2-
Oxoglutarate Dehydrogenase Complex From Azotobacter
Vineland Ii, Nmr, Minimized Average Structure
pdb|1GHK|A Chain A, Solution Structure Of The Lipoyl Domain Of The 2-
Oxoglutarate Dehydrogenase Complex From Azotobacter
Vineland Ii, Nmr, 25 Structures
Length = 79
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 36/57 (63%)
Query: 2 PSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDG 58
P+ ++ +G +A W KK G+ V E++ ++ETDK +E+ +G +A+IVK +G
Sbjct: 7 PTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEG 63
>pdb|3RNM|E Chain E, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|F Chain F, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
Length = 58
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 132 RLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYL 171
+ A+P RNLA E+N+ LS + G+G +G I+K DI +YL
Sbjct: 7 KTLATPAVRNLAMENNIKLSEVVGSGKDGRILKEDILNYL 46
>pdb|2L5T|A Chain A, Solution Nmr Structure Of E2 Lipoyl Domain From
Thermoplasma Acidophilum
Length = 77
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 1 MPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGS 59
+P + + EG I RW KEGD V + L EV TDK TV++ G + KI+ +G
Sbjct: 6 LPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQ 64
>pdb|1ZWV|A Chain A, Solution Structure Of The Subunit Binding Domain (Hbsbd)
Of The Human Mitochondrial Branched-Chain Alpha-Ketoacid
Dehydrogenase
Length = 58
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 134 FASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYL 171
A+P R LA E+N+ LS + G+G +G I+K DI +YL
Sbjct: 9 LATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYL 46
>pdb|1W4I|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
Length = 62
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 135 ASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDY 170
A P AR LA+E + LS +KGTGP G+I D++ Y
Sbjct: 7 AMPAARRLAKELGIDLSKVKGTGPGGVITVEDVKRY 42
>pdb|2COO|A Chain A, Solution Structure Of The E3_binding Domain Of
Dihydrolipoamide Branched Chaintransacylase
Length = 70
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 132 RLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLASR-GKEVPAKAP 183
+ A+P R LA E+N+ LS + G+G +G I+K DI +YL + G +P P
Sbjct: 15 KTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQTGAILPPSGP 67
>pdb|2CYU|A Chain A, Nmr Structure Of A Downhill Folding Protein
Length = 40
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 136 SPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLA 172
SP R L EHN+ S+IKGTG G + + D+E +LA
Sbjct: 3 SPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLA 39
>pdb|2BTG|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
pdb|2BTH|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
Length = 47
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 136 SPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLA 172
SP R L EHN+ S+IKGTG G + + D+E +LA
Sbjct: 9 SPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKWLA 45
>pdb|1W4H|A Chain A, Peripheral-Subunit From Mesophilic, Thermophilic And
Hyperthermophilic Bacteria Fold By Ultrafast, Apparently
Two-State Transitions
Length = 47
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 136 SPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLA 172
SP R L EHN+ S+IKGTG G + + D+E +LA
Sbjct: 9 SPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLA 45
>pdb|1BAL|A Chain A, Three-Dimensional Solution Structure Of The E3-Binding
Domain Of The Dihydrolipoamide Succinyltransferase Core
From The 2-Oxoglutarate Dehydrogenase Multienzyme
Complex Of (Escherichia Coli)
pdb|1BBL|A Chain A, Three-Dimensional Solution Structure Of The E3-Binding
Domain Of The Dihydrolipoamide Succinyltransferase Core
From The 2-Oxoglutarate Dehydrogenase Multienzyme
Complex Of Escherichia Coli
Length = 51
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 136 SPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLA 172
SP R L EHN+ S+IKGTG G + + D+E +LA
Sbjct: 13 SPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLA 49
>pdb|1K8O|A Chain A, Solution Structure Of The Lipoic Acid-Bearing Domain Of
The E2 Component Of Human, Mitochondrial Branched-Chain
Alpha- Ketoacid Dehydrogenase
pdb|1K8M|A Chain A, Solution Structure Of The Lipoic Acid-Bearing Domain Of
The E2 Component Of Human, Mitochondrial Branched-Chain
Alpha- Ketoacid Dehydrogenase
Length = 93
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 1 MPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKI 53
+ + ++E + W KEGD VS + +CEV++DKA+V + +G + K+
Sbjct: 9 LSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKL 61
>pdb|1W4G|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Folding Transitions
Length = 47
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 132 RLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLAS 173
R+ A P R A E V + ++GTG NG ++K DI+ +LA
Sbjct: 5 RVIAMPSVRKWAREKGVDIRLVQGTGKNGRVLKEDIDAFLAG 46
>pdb|1W4E|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
pdb|1W4F|A Chain A, Peripheral-Subunit From Mesophilic, Thermophilic And
Hyperthermophilic Bacteria Fold By Ultrafast, Apparently
Two-State Transitions
Length = 47
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 132 RLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLAS 173
R+ A P R A E V + ++GTG NG ++K DI+ +LA
Sbjct: 5 RVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAWLAG 46
>pdb|1W85|I Chain I, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|J Chain J, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W88|I Chain I, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|J Chain J, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 49
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 132 RLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLAS 173
R+ A P R A E V + ++GTG NG ++K DI+ +LA
Sbjct: 6 RVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAG 47
>pdb|1W3D|A Chain A, Nmr Structure Of The Peripheral-Subunit Binding Domain Of
Bacillus Stearothermophilus E2p
Length = 55
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 132 RLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLAS 173
R+ A P R A E V + ++GTG NG ++K DI+ +LA
Sbjct: 12 RVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAG 53
>pdb|1W4J|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
pdb|1W4K|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
Length = 51
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 133 LFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDY 170
+ A P AR LA+E + S +KGTGP G+I D++ +
Sbjct: 5 VAAMPAARRLAKELGIDASKVKGTGPGGVITVEDVKRW 42
>pdb|2PDD|A Chain A, The High Resolution Structure Of The Peripheral Subunit-
Binding Domain Of Dihydrolipoamide Acetyltransferase
From The Pyruvate Dehydrogenase Multienzyme Complex Of
Bacillus Stearothermophilus
Length = 43
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 133 LFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLAS 173
+ A P R A E V + ++GTG NG ++K DI+ +LA
Sbjct: 1 VIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAG 41
>pdb|1EBD|C Chain C, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
Length = 41
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 134 FASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLAS 173
A P R A E V + ++GTG NG ++K DI+ +LA
Sbjct: 1 IAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAG 40
>pdb|2PDE|A Chain A, The High Resolution Structure Of The Peripheral
Subunit-Binding Domain Of Dihydrolipoamide
Acetyltransferase From The Pyruvate Dehydrogenase
Multienzyme Complex Of Bacillus Stearothermophilus
Length = 43
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 134 FASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLAS 173
A P R A E V + ++GTG NG ++K DI+ +LA
Sbjct: 2 IAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAG 41
>pdb|2WXC|A Chain A, The Folding Mechanism Of Bbl: Plasticity Of Transition-
State Structure Observed Within An Ultrafast Folding
Protein Family
Length = 47
Score = 35.8 bits (81), Expect = 0.045, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 136 SPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLA 172
SP R L E N+ S+IKGTG G + + D+E +LA
Sbjct: 9 SPAIRRLLAEWNLDASAIKGTGVGGRLTREDVEKHLA 45
>pdb|2F5Z|K Chain K, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|L Chain L, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|M Chain M, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|N Chain N, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|O Chain O, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F60|K Chain K, Crystal Structure Of The Dihydrolipoamide Dehydrogenase
(e3)-binding Domain Of Human E3-binding Protein
Length = 64
Score = 34.3 bits (77), Expect = 0.12, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 132 RLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKAD 166
R SP ARN+ E+H++ S TGP G+ K D
Sbjct: 9 RFRLSPAARNILEKHSLDASQGTATGPRGIFTKED 43
>pdb|1MXS|A Chain A, Crystal Structure Of 2-Keto-3-Deoxy-6-Phosphogluconate
(Kdpg) Aldolase From Pseudomonas Putida
Length = 225
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 310 GLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAI--INP 360
G+ST +E + A + L P + GG + GGPFG +FC +NP
Sbjct: 125 GISTPSEIMMGYALGYRRFKLFPAEISGGVAAIKAFGGPFGDIRFCPTGGVNP 177
>pdb|2EQ9|C Chain C, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|F Chain F, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|I Chain I, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|L Chain L, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
Length = 41
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 133 LFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDY 170
+ A P AR LA E + + + G+GP G + D+ Y
Sbjct: 1 MLAVPAARKLARELGIPIEEVPGSGPLGRVRVEDVRAY 38
>pdb|1FWR|A Chain A, Crystal Structure Of Kdpg Aldolase Double Mutant
K133qT161K
pdb|1FWR|B Chain B, Crystal Structure Of Kdpg Aldolase Double Mutant
K133qT161K
pdb|1FWR|C Chain C, Crystal Structure Of Kdpg Aldolase Double Mutant
K133qT161K
Length = 213
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 297 GLYVPVIRDADK------KGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFG 350
GL P+++ A + G+ST++E + + K+ P + GG + + GPF
Sbjct: 95 GLTEPLLKAATEGTIPLIPGISTVSELMLGMDYGLKEFQFFPAEANGGVKALQAIAGPFS 154
Query: 351 IKQFCAIINPPQSGI 365
+FC P+ GI
Sbjct: 155 QVRFC-----PKGGI 164
>pdb|2EQ7|C Chain C, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
Length = 40
Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 134 FASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYL 171
A P A L +E VS + ++GTG G I+K D+ +L
Sbjct: 1 LAMPAAERLMQEKGVSPAEVQGTGLGGRILKEDVMRHL 38
>pdb|4ANU|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors.
pdb|4ANW|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors
Length = 980
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 14/75 (18%)
Query: 215 KQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSS 274
K+T PH+ DICV + LR+ N L+I + + + +P+ S
Sbjct: 862 KKTSPHFQKFQDICVKAYLALRHH--------------TNLLIILFSMMLMTGMPQLTSK 907
Query: 275 WADEYIRQFKNVNIN 289
EYIR V N
Sbjct: 908 EDIEYIRDALTVGKN 922
>pdb|4ANX|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors
Length = 980
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 14/75 (18%)
Query: 215 KQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSS 274
K+T PH+ DICV + LR+ N L+I + + + +P+ S
Sbjct: 862 KKTSPHFQKFQDICVKAYLALRHH--------------TNLLIILFSMMLMTGMPQLTSK 907
Query: 275 WADEYIRQFKNVNIN 289
EYIR V N
Sbjct: 908 EDIEYIRDALTVGKN 922
>pdb|3APC|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With
Ch5132799
pdb|3APD|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With
Ch5108134
pdb|3APF|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With
Ch5039699
Length = 966
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 14/75 (18%)
Query: 215 KQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSS 274
K+T PH+ DICV + LR+ N L+I + + + +P+ S
Sbjct: 864 KKTSPHFQKFQDICVKAYLALRHH--------------TNLLIILFSMMLMTGMPQLTSK 909
Query: 275 WADEYIRQFKNVNIN 289
EYIR V N
Sbjct: 910 EDIEYIRDALTVGKN 924
>pdb|2C0A|A Chain A, Mechanism Of The Class I Kdpg Aldolase
pdb|2C0A|B Chain B, Mechanism Of The Class I Kdpg Aldolase
pdb|2C0A|C Chain C, Mechanism Of The Class I Kdpg Aldolase
pdb|1WBH|A Chain A, Crystal Structure Of The E45n Mutant From Kdpg Aldolase
From Escherichia Coli
pdb|1WBH|B Chain B, Crystal Structure Of The E45n Mutant From Kdpg Aldolase
From Escherichia Coli
pdb|1WBH|C Chain C, Crystal Structure Of The E45n Mutant From Kdpg Aldolase
From Escherichia Coli
Length = 214
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 11/75 (14%)
Query: 297 GLYVPVIRDADK------KGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFG 350
GL P+++ A + G+ST++E + + K+ P + GG + + GPF
Sbjct: 96 GLTEPLLKAATEGTIPLIPGISTVSELMLGMDYGLKEFKFFPAEANGGVKALQAIAGPFS 155
Query: 351 IKQFCAIINPPQSGI 365
+FC P GI
Sbjct: 156 QVRFC-----PTGGI 165
>pdb|1HE8|A Chain A, Ras G12v-Pi 3-Kinase Gamma Complex
Length = 965
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 14/75 (18%)
Query: 215 KQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSS 274
K+T PH+ DICV + LR+ N L+I + + + +P+ S
Sbjct: 857 KKTSPHFQKFQDICVKAYLALRHH--------------TNLLIILFSMMLMTGMPQLTSK 902
Query: 275 WADEYIRQFKNVNIN 289
EYIR V N
Sbjct: 903 EDIEYIRDALTVGKN 917
>pdb|1FQ0|A Chain A, Kdpg Aldolase From Escherichia Coli
pdb|1FQ0|B Chain B, Kdpg Aldolase From Escherichia Coli
pdb|1FQ0|C Chain C, Kdpg Aldolase From Escherichia Coli
pdb|1EUA|A Chain A, Schiff Base Intermediate In Kdpg Aldolase From Escherichia
Coli
pdb|1EUA|B Chain B, Schiff Base Intermediate In Kdpg Aldolase From Escherichia
Coli
pdb|1EUA|C Chain C, Schiff Base Intermediate In Kdpg Aldolase From Escherichia
Coli
pdb|1EUN|A Chain A, Structure Of 2-keto-3-deoxy-6-phosphogluconate Aldolase
From Escherichia Coli
pdb|1EUN|B Chain B, Structure Of 2-keto-3-deoxy-6-phosphogluconate Aldolase
From Escherichia Coli
pdb|1EUN|C Chain C, Structure Of 2-keto-3-deoxy-6-phosphogluconate Aldolase
From Escherichia Coli
Length = 213
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 11/75 (14%)
Query: 297 GLYVPVIRDADK------KGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFG 350
GL P+++ A + G+ST++E + + K+ P + GG + + GPF
Sbjct: 95 GLTEPLLKAATEGTIPLIPGISTVSELMLGMDYGLKEFKFFPAEANGGVKALQAIAGPFS 154
Query: 351 IKQFCAIINPPQSGI 365
+FC P GI
Sbjct: 155 QVRFC-----PTGGI 164
>pdb|3QAQ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Triazine-Benzimidazole 1
pdb|3QAR|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Triazine-Benzimidazole 32
pdb|3QJZ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Benzothiazole 1
pdb|3QK0|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Benzothiazole 82
pdb|3S2A|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With A
Quinoline Inhibitor
pdb|4FHJ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Imidazopyridine 2
pdb|4F1S|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With A
Pyridyl- Triazine-Sulfonamide Inhibitor
pdb|4FLH|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With
Amg511
pdb|4FJY|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Quinoline-Indoline Inhibitor 24f
pdb|4FJZ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Pyrrolo-Pyridine Inhibitor 63
Length = 960
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 14/75 (18%)
Query: 215 KQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSS 274
K+T PH+ DICV + LR+ N L+I + + + +P+ S
Sbjct: 858 KKTSPHFQKFQDICVKAYLALRHH--------------TNLLIILFSMMLMTGMPQLTSK 903
Query: 275 WADEYIRQFKNVNIN 289
EYIR V N
Sbjct: 904 EDIEYIRDALTVGKN 918
>pdb|4DK5|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With A
Pyridyl- Triazine Inhibitor
Length = 959
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 14/75 (18%)
Query: 215 KQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSS 274
K+T PH+ DICV + LR+ N L+I + + + +P+ S
Sbjct: 857 KKTSPHFQKFQDICVKAYLALRHH--------------TNLLIILFSMMLMTGMPQLTSK 902
Query: 275 WADEYIRQFKNVNIN 289
EYIR V N
Sbjct: 903 EDIEYIRDALTVGKN 917
>pdb|3ENE|A Chain A, Complex Of Pi3k Gamma With An Inhibitor
Length = 959
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 14/75 (18%)
Query: 215 KQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSS 274
K+T PH+ DICV + LR+ N L+I + + + +P+ S
Sbjct: 857 KKTSPHFQKFQDICVKAYLALRHH--------------TNLLIILFSMMLMTGMPQLTSK 902
Query: 275 WADEYIRQFKNVNIN 289
EYIR V N
Sbjct: 903 EDIEYIRDALTVGKN 917
>pdb|3DBS|A Chain A, Structure Of Pi3k Gamma In Complex With Gdc0941
pdb|3L13|A Chain A, Crystal Structures Of Pan-Pi3-Kinase And Dual
Pan-Pi3-KinaseMTOR Inhibitors
pdb|4AOF|A Chain A, Selective Small Molecule Inhibitor Discovered By
Chemoproteomic Assay Platform Reveals Regulation Of Th17
Cell Differentiation By Pi3kgamma
Length = 960
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 14/75 (18%)
Query: 215 KQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSS 274
K+T PH+ DICV + LR+ N L+I + + + +P+ S
Sbjct: 858 KKTSPHFQKFQDICVKAYLALRHH--------------TNLLIILFSMMLMTGMPQLTSK 903
Query: 275 WADEYIRQFKNVNIN 289
EYIR V N
Sbjct: 904 EDIEYIRDALTVGKN 918
>pdb|3CST|A Chain A, Crystal Structure Of Pi3k P110gamma Catalytical Domain In
Complex With Organoruthenium Inhibitor E5e2
pdb|3CSF|A Chain A, Crystal Structure Of Pi3k P110gamma Catalytical Domain In
Complex With Organoruthenium Inhibitor Dw2
pdb|3L16|A Chain A, Discovery Of (Thienopyrimidin-2-Yl)aminopyrimidines As
Potent, Selective, And Orally Available Pan-Pi3-Kinase
And Dual Pan-Pi3- KinaseMTOR INHIBITORS FOR THE
TREATMENT OF CANCER
pdb|3L17|A Chain A, Discovery Of (Thienopyrimidin-2-Yl)aminopyrimidines As
Potent, Selective, And Orally Available Pan-Pi3-Kinase
And Dual Pan-Pi3- KinaseMTOR INHIBITORS FOR THE
TREATMENT OF CANCER
pdb|3L08|A Chain A, Structure Of Pi3k Gamma With A Potent Inhibitor:
Gsk2126458
pdb|3OAW|A Chain A, 4-Methylpteridineones As Orally Active And Selective
Pi3kMTOR DUAL Inhibitors
pdb|3PRE|A Chain A, Quinazolines With Intra-Molecular Hydrogen Bonding
Scaffold (Imhbs) As Pi3kMTOR DUAL INHIBITORS.
pdb|3PRZ|A Chain A, Quinazolines With Intra-Molecular Hydrogen Bonding
Scaffold (Imhbs) As Pi3kMTOR DUAL INHIBITORS.
pdb|3PS6|A Chain A, Quinazolines With Intra-Molecular Hydrogen Bonding
Scaffold (Imhbs) As Pi3kMTOR DUAL INHIBITORS.
pdb|3R7Q|A Chain A, Structure-Based Design Of Thienobenzoxepin Inhibitors Of
Pi3- Kinase
pdb|3R7R|A Chain A, Structure-Based Design Of Thienobenzoxepin Inhibitors Of
Pi3-Kinase
pdb|3ZVV|A Chain A, Fragment Bound To Pi3kinase Gamma
pdb|3ZW3|A Chain A, Fragment Based Discovery Of A Novel And Selective Pi3
Kinase Inhibitor
pdb|3TL5|A Chain A, Discovery Of Gdc-0980: A Potent, Selective, And Orally
Available Class I Phosphatidylinositol 3-Kinase
(Pi3k)MAMMALIAN TARGET OF RAPAMYCIN (Mtor) Kinase
Inhibitor For The Treatment Of Cancer
pdb|3T8M|A Chain A, Rational Design Of Pi3k-Alpha Inhibitors That Exhibit
Selectivity Over The Pi3k-Beta Isoform
pdb|4GB9|A Chain A, Potent And Highly Selective Benzimidazole Inhibitors Of
Pi3k-Delta
pdb|4G11|A Chain A, X-Ray Structure Of Pi3k-Gamma Bound To A
4-(Morpholin-4-Yl)- (6-Oxo-1,
6-Dihydropyrimidin-2-Yl)amide Inhibitor
pdb|4HLE|A Chain A, Compound 21 (1-alkyl-substituted 1,2,4-triazoles)
Length = 966
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 14/75 (18%)
Query: 215 KQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSS 274
K+T PH+ DICV + LR+ N L+I + + + +P+ S
Sbjct: 858 KKTSPHFQKFQDICVKAYLALRHH--------------TNLLIILFSMMLMTGMPQLTSK 903
Query: 275 WADEYIRQFKNVNIN 289
EYIR V N
Sbjct: 904 EDIEYIRDALTVGKN 918
>pdb|1E8Y|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|1E8Z|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|2A4Z|A Chain A, Crystal Structure Of Human Pi3kgamma Complexed With
As604850
pdb|2A5U|A Chain A, Crystal Structure Of Human Pi3kgamma Complexed With
As605240
pdb|2CHW|A Chain A, A Pharmacological Map Of The Pi3-K Family Defines A Role
For P110 Alpha In Signaling: The Structure Of Complex Of
Phosphoinositide 3-Kinase Gamma With Inhibitor Pik-39
pdb|2CHX|A Chain A, A Pharmacological Map Of The Pi3-K Family Defines A Role
For P110alpha In Signaling: The Structure Of Complex Of
Phosphoinositide 3-Kinase Gamma With Inhibitor Pik-90
pdb|2CHZ|A Chain A, A Pharmacological Map Of The Pi3-K Family Defines A Role
For P110alpha In Signaling: The Structure Of Complex Of
Phosphoinositide 3-Kinase Gamma With Inhibitor Pik-93
pdb|3DPD|A Chain A, Achieving Multi-Isoform Pi3k Inhibition In A Series Of
Substituted 3,4-Dihydro-2h-Benzo[1,4]oxazines
pdb|2V4L|A Chain A, Complex Of Human Phosphoinositide 3-kinase Catalytic
Subunit Gamma (p110 Gamma) With Pik-284
pdb|3IBE|A Chain A, Crystal Structure Of A Pyrazolopyrimidine Inhibitor Bound
To Pi3 Kinase Gamma
pdb|3LJ3|A Chain A, Pi3-Kinase-Gamma With A Pyrrolopyridine-Benzofuran
Inhibitor
pdb|3ML8|A Chain A, Discovery Of The Highly Potent Pi3kMTOR DUAL INHIBITOR
PF-0 Through Structure Based Drug Design
pdb|3ML9|A Chain A, Discovery Of The Highly Potent Pi3kMTOR DUAL INHIBITOR
PF-0 Through Structure Based Drug Design
pdb|3MJW|A Chain A, Pi3 Kinase Gamma With A Benzofuranone Inhibitor
pdb|3P2B|A Chain A, Crystal Structure Of Pi3k Gamma With
3-(2-Morpholino-6-(Pyridin-3-
Ylamino)pyrimidin-4-Yl)phenol
pdb|3SD5|A Chain A, Crystal Structure Of Pi3k Gamma With
5-(2,4-Dimorpholinopyrimidin-6-
Yl)-4-(Trifluoromethyl)pyridin-2-Amine
pdb|3TJP|A Chain A, Crystal Structure Of Pi3k Gamma With
N6-(3,4-Dimethoxyphenyl)-2-
Morpholino-[4,5'-Bipyrimidine]-2',6-Diamine
pdb|4FUL|A Chain A, Pi3 Kinase Gamma Bound To A Pyrmidine Inhibitor
Length = 966
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 14/75 (18%)
Query: 215 KQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSS 274
K+T PH+ DICV + LR+ N L+I + + + +P+ S
Sbjct: 858 KKTSPHFQKFQDICVKAYLALRHH--------------TNLLIILFSMMLMTGMPQLTSK 903
Query: 275 WADEYIRQFKNVNIN 289
EYIR V N
Sbjct: 904 EDIEYIRDALTVGKN 918
>pdb|1WAU|A Chain A, Structure Of Kdpg Aldolase E45n Mutant
Length = 213
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 11/75 (14%)
Query: 297 GLYVPVIRDADK------KGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFG 350
GL P+++ A + G+ST++E + + K+ P + GG + + GPF
Sbjct: 95 GLTEPLLKAATEGTIPLIPGISTVSELMLGMDYGLKEFKFFPAEANGGVKALQAIAGPFS 154
Query: 351 IKQFCAIINPPQSGI 365
+FC P GI
Sbjct: 155 QVRFC-----PTGGI 164
>pdb|3NZS|A Chain A, Structure-Based Optimization Of Pyrazolo -Pyrimidine And
-Pyridine Inhibitors Of Pi3-Kinase
pdb|3NZU|A Chain A, Structure-Based Optimization Of Pyrazolo -Pyrimidine And
-Pyridine Inhibitors Of Pi3-Kinase
Length = 954
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 14/75 (18%)
Query: 215 KQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSS 274
K+T PH+ DICV + LR+ N L+I + + + +P+ S
Sbjct: 854 KKTSPHFQKFQDICVKAYLALRHH--------------TNLLIILFSMMLMTGMPQLTSK 899
Query: 275 WADEYIRQFKNVNIN 289
EYIR V N
Sbjct: 900 EDIEYIRDALTVGKN 914
>pdb|2EQ8|C Chain C, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|F Chain F, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
Length = 40
Score = 29.6 bits (65), Expect = 3.2, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 135 ASPVARNLAEEHNVSLSSIKGTGPNGLIVKADI 167
A+P R LA E V L+ ++GTG G I + D+
Sbjct: 2 AAPSIRRLARELGVDLTRLRGTGLAGRITEEDV 34
>pdb|4ANV|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors
Length = 980
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 14/75 (18%)
Query: 215 KQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSS 274
K+T PH+ DICV + LR+ N L+I + + + +P S
Sbjct: 862 KKTSPHFQKFQDICVKAYLALRHH--------------TNLLIILFSMMLMTGMPELTSK 907
Query: 275 WADEYIRQFKNVNIN 289
EYIR V N
Sbjct: 908 EDIEYIRDALTVGKN 922
>pdb|3L54|A Chain A, Structure Of Pi3k Gamma With Inhibitor
Length = 966
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 14/75 (18%)
Query: 215 KQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSS 274
K+T PH+ D+CV + LR+ N L+I + + + +P+ S
Sbjct: 858 KKTSPHFQKFQDVCVKAYLALRHH--------------TNLLIILFSMMLMTGMPQLTSK 903
Query: 275 WADEYIRQFKNVNIN 289
EYIR V N
Sbjct: 904 EDIEYIRDALTVGKN 918
>pdb|3JSL|A Chain A, Crystal Structure Of The Adenylation Domain Of Nad+-
Dependent Dna Ligase From Staphylococcus Aureus
pdb|3JSL|B Chain B, Crystal Structure Of The Adenylation Domain Of Nad+-
Dependent Dna Ligase From Staphylococcus Aureus
pdb|3JSN|A Chain A, Crystal Structure Of The Adenylation Domain Of Nad+-
Dependent Dna Ligase From Staphylococcus Aureus
Length = 318
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/59 (20%), Positives = 33/59 (55%)
Query: 1 MPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGS 59
M SL E ++ ++ ++ +++ E +CE++ D V ++ ++ ++ + +GDG+
Sbjct: 79 MLSLGNAFNEDDLRKFDQRIREQIGNVEYMCELKIDGLAVSLKYVDGYFVQGLTRGDGT 137
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,792,177
Number of Sequences: 62578
Number of extensions: 475487
Number of successful extensions: 1091
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1007
Number of HSP's gapped (non-prelim): 76
length of query: 425
length of database: 14,973,337
effective HSP length: 102
effective length of query: 323
effective length of database: 8,590,381
effective search space: 2774693063
effective search space used: 2774693063
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)